LOCUS       DADMJB010000001       107625 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.001, whole genome shotgun sequence.
ACCESSION   DADMJB010000001 DADMJB010000000
VERSION     DADMJB010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 107625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 107625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..107625
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.001"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..418)
                     /gene="yeeE"
                     /locus_tag="JN078_000001"
     CDS             complement(<1..418)
                     /gene="yeeE"
                     /locus_tag="JN078_000001"
                     /inference="COORDINATES: protein motif:HMM:NF016064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transport protein YeeE"
                     /protein_id="HAY9039337.1"
                     /translation="MTYEAGAFPWPGTVIGGYIFGLGIVLAGGCATGTWYRAGEGLIG
                     SWIALFTYMVMSAVMRSPHASGLNQTLQHYSTEHNSIAETFNLSVWPLVAVLLVITLW
                     VVMKELKKPKLKVATLPPRRTGIAHILFEKRWHPFVT"
     gene            complement(428..610)
                     /locus_tag="JN078_000002"
     CDS             complement(428..610)
                     /locus_tag="JN078_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001467426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE family protein"
                     /protein_id="HAY9039338.1"
                     /translation="MFSMILSGLICGALLGFVMQRGRFCLTGGFRDMYIAKNNRMFYA
                     LLIAISVQSVGVFALI"
     gene            complement(789..2147)
                     /gene="plaP"
                     /locus_tag="JN078_000003"
     CDS             complement(789..2147)
                     /gene="plaP"
                     /locus_tag="JN078_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416518.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine/proton symporter PlaP"
                     /protein_id="HAY9039339.1"
                     /translation="MSHNVTPNTSRVELRKTLTLVPVVMMGLAYMQPMTLFDTFGIVS
                     GLTDGHVPTAYAFALIAILFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGWSS
                     LLDYLFAPMINILLAKIYFEALVPSIPSWMFVVALVAFMTAFNLRSLKSVANFNTVIV
                     VLQVVLIAVILGMVVYGVFEGEGAGTLASTRPFWSGDAHVIPMITGATILCFSFTGFD
                     GISNLSEETKDAERVIPRAIFLTALIGGMIFIFATYFLQLYFPDISRFKDPDASQPEI
                     MLYVAGKAFQVGALIFSTITVLASGMAAHAGVARLMYVMGRDGVFPKSFFGYVHPKWR
                     TPAMNIILVGAIALLAINFDLVMATALINFGALVAFTFVNLSVISQFWIREKRNKTLK
                     DHFQYLFLPMCGALTVGALWVNLEESSMVLGLIWAAIGLIYLACVTKSFRNPVPQYED
                     VA"
     gene            complement(2137..2199)
                     /gene="yoeI"
                     /locus_tag="JN078_000004"
     CDS             complement(2137..2199)
                     /gene="yoeI"
                     /locus_tag="JN078_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein YoeI"
                     /protein_id="HAY9039340.1"
                     /translation="MGQFFAYATVITVKENDHVA"
     gene            complement(2414..3343)
                     /locus_tag="JN078_000005"
     CDS             complement(2414..3343)
                     /locus_tag="JN078_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416519.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY9039341.1"
                     /translation="MKPLLDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLESD
                     LNIQLLDRSGHRAKFTRTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDT
                     FPFSLLAPLIEAFYQHHSVTRLKFINGVLGGSWDALTQGRADIIVGAMHEPPSSSEFG
                     FSRLGDLEQVFAVAPHHPLALEEEPLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQE
                     AITVFDFKTKLELQISGLGCGYLPRYLAQHFLDSGALIEKKVVAQTLFEPVWIGWNEQ
                     TAGLASGWWRDEILANSAIAGVYAKSDDGKSAI"
     gene            complement(3389..4213)
                     /locus_tag="JN078_000006"
     CDS             complement(3389..4213)
                     /locus_tag="JN078_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAY9039342.1"
                     /translation="MKKVAIVGLGWLGMPLAMSLSARGWQVTGSKTTQDGVEAARMSG
                     IDSYLLRMEPELVCDSDDLDALMDADALVITLPARRSGSGDEFYLQAVQELVDSALAH
                     RIPRIIFTSSTSVYGDAQGMVKETTPRNPVTNSGRVLEELEDWLHNLPGTSVDILRLA
                     GLVGPGRHPGRFFAGKTAPDGEHGVNLVHLEDVIGAITLLLQAPKGGHIYNICAPAHP
                     ARNVFYPQMARLLGLEPPQFRNSLDSGKGKIIDGSRICNELGFEYQYPDPLVMPLE"
     gene            complement(4296..4550)
                     /gene="yoeB"
                     /locus_tag="JN078_000007"
                     /pseudo
     CDS             complement(4296..4550)
                     /gene="yoeB"
                     /locus_tag="JN078_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707909.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin YoeB"
     gene            complement(4547..4798)
                     /gene="yefM"
                     /locus_tag="JN078_000008"
     CDS             complement(4547..4798)
                     /gene="yefM"
                     /locus_tag="JN078_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoeB-YefM toxin-antitoxin system antitoxin YefM"
                     /protein_id="HAY9039343.1"
                     /translation="MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEE
                     YNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKDIIE"
     gene            5081..5131
                     /gene="hisL"
                     /locus_tag="JN078_000009"
     CDS             5081..5131
                     /gene="hisL"
                     /locus_tag="JN078_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="his operon leader peptide"
                     /protein_id="HAY9039344.1"
                     /translation="MTRVQFKHHHHHHHPD"
     gene            5277..6176
                     /gene="hisG"
                     /locus_tag="JN078_000010"
     CDS             5277..6176
                     /gene="hisG"
                     /locus_tag="JN078_000010"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HAY9039345.1"
                     /translation="MTDNTRLRIAMQKSGRLSDDSRELLARCGIKINLHTQRLIAMAE
                     NMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFG
                     GCRLSLATPVDEAWDGPLSLNGKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEVAPR
                     AGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMEESKQQLIDKLLTRIQ
                     GVIQARESKYIMMHAPTERLDEVIALLPGAERPTILPLAGDQQRVAMHMVSSETLFWE
                     TMEKLKALGASSILVLPIEKMME"
     gene            6182..7486
                     /gene="hisD"
                     /locus_tag="JN078_000011"
     CDS             6182..7486
                     /gene="hisD"
                     /locus_tag="JN078_000011"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HAY9039346.1"
                     /translation="MSFNTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVK
                     ARGDEALREYSAKFDKTTVTALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQ
                     KLPPVDVETQPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPARIAGCKKVVLC
                     SPPPIADEILYAAQLCGVQDVFNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAK
                     RQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPAAD
                     MARRVAEAVERQLAELPRAETARQALNASRLIVTKDLAQCVEISNQYGPEHLIIQTRN
                     ARDLVDGITSAGSVFLGDWSLESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTV
                     QELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQA"
     gene            7483..8553
                     /gene="hisC"
                     /locus_tag="JN078_000012"
     CDS             7483..8553
                     /gene="hisC"
                     /locus_tag="JN078_000012"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HAY9039347.1"
                     /translation="MSIVTITDLARENVRNLTPYQSARRLGGNGDVWLNANEYPTAVE
                     FQLTQQTLNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDA
                     ILYCPPTYGMYGVSAETIGVECRTVPTLDNWQLDLQGISDKLEGVKVVYVCSPNNPTG
                     QLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFAL
                     AGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAER
                     ECLIAALKEIPCVEQVFDSETNYILARFKASSAVFKSLWDQGIILRDQNKHPSLSGCL
                     RITVGTREESQRVIDALRAEQV"
     gene            8553..9620
                     /gene="hisB"
                     /locus_tag="JN078_000013"
     CDS             8553..9620
                     /gene="hisB"
                     /locus_tag="JN078_000013"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HAY9039348.1"
                     /translation="MSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPELLKLQ
                     KAGYKLVMITNQDGLGTQSFLQADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECD
                     CRKPKVKLVERYLAEQAMDRANSYVIGDRATDIQLAENMGINGLRYDRETLNWPMIGE
                     QLTKRDRYAHVVRNTKETQIDVQVWLDREGGSKINTGVGFFDHMLDQIATHGGFRMEI
                     NVKGDLYIDDHHTVEDTGLALGEALKIALGDKRGICRFGFVLPMDECLARCALDISGR
                     PHLEYKAEFTYQRVGDLSTEMIEHFFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFG
                     RTLRQAIRVEGDTLPSSKGVL"
     gene            9620..10210
                     /gene="hisH"
                     /locus_tag="JN078_000014"
     CDS             9620..10210
                     /gene="hisH"
                     /locus_tag="JN078_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HAY9039349.1"
                     /translation="MNVVILDTGCANLNSVKSAIARHGYEPKVSRDPDVVLLADKLFL
                     PGVGTAQAAMDQVRERELFDLIKACTQPVLGICLGMQLLGRRSEESNGVDLLGIIDED
                     VPKMTDFGLPLPHMGWNRVYPQAGNRLFQGIEDGAYFYFVHSYAMPVNPWTIAQCNYG
                     EPFTAAVQKDNFYGVQFHPERSGAAGAKLLKNFLEM"
     gene            10210..10947
                     /gene="hisA"
                     /locus_tag="JN078_000015"
     CDS             10210..10947
                     /gene="hisA"
                     /locus_tag="JN078_000015"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310852.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HAY9039350.1"
                     /translation="MIIPALDLIDGTVVRLHQGDYGKQRDYGNDPLPRLQDYAAQGAE
                     VLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRSEEDVAALLEAGVARVVVG
                     STAVKSPEMVKGWFERFGADALVLALDVRIDEQGNKQVAVSGWQENSGVSLEQLVETY
                     LPVGLKHVLCTDISRDGTLAGSNVSLYEEVCARYPQVAFQSSGGIGDINDVAALRGTG
                     VRGVIVGRALLEGKFTVKEAIACWQNA"
     gene            10929..11705
                     /gene="hisF"
                     /locus_tag="JN078_000016"
     CDS             10929..11705
                     /gene="hisF"
                     /locus_tag="JN078_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015853929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HAY9039351.1"
                     /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAKRYAEEGA
                     DELVFYDITASSDGRVVDKSWVSRVAEVIDIPFCVAGGIKSLEDAAKILSFGADKISI
                     NSPALADPTLITRLADRFGVQCIVVGIDTWYDGETGKYHVNQYTGDESRTRVTQWETL
                     DWVQEVQKRGAGEIVLNMMNQDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLE
                     AFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRIC"
     gene            11699..12310
                     /locus_tag="JN078_000017"
     CDS             11699..12310
                     /locus_tag="JN078_000017"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HAY9039352.1"
                     /translation="MLTEQQRRELDWEKTDGLMPVIVQHAVSGEVLMLGYMNPEALDK
                     TIESGKVTFFSRTKQRLWTKGETSGNFLNVVNIAPDCDNDTLLVLANPIGPTCHKGTS
                     SCFGDTAHQWLFLYQLEQLLAERKSADPETSYTAKLYASGTKRIAQKVGEEGVETALA
                     ATVHDRFELTNEASDLMYHLLVLLQDQDLDLTTVIENLRKRHQ"
     gene            complement(12407..13384)
                     /gene="wzzB"
                     /locus_tag="JN078_000018"
     CDS             complement(12407..13384)
                     /gene="wzzB"
                     /locus_tag="JN078_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310855.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen chain length determinant protein
                     WzzB"
                     /protein_id="HAY9039353.1"
                     /translation="MRVENNNVSGQNHDPEQIDLIDFLVQLWRGKMTIIISVIVAIAL
                     AIGYLAVAKEKWTSTAIVTQPDVGQIAGYTNAMNVIYGPAVPKVSDIQTSLIGRYSTA
                     FSALAETLDNQEEPEKLTIEPTVKNQSLPLAVSYVGETAEGAQKQLAQYIQQVDDQVN
                     EELEKDLKDNIALRMKNLQDSLKTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQVQ
                     QTEDVTQDTLFLLGSEALESMIKHEATRPLVFSSNYYQTRQNLLDIESLKVDDLDIHA
                     YRYVMKPTLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK"
     gene            complement(13531..13623)
                     /locus_tag="JN078_000019"
                     /pseudo
     CDS             complement(13531..13623)
                     /locus_tag="JN078_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416532.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 6-dehydrogenase"
     gene            13793..14797
                     /locus_tag="JN078_000020"
     CDS             13793..14797
                     /locus_tag="JN078_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015572392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase"
                     /protein_id="HAY9039354.1"
                     /translation="MKFLVTGAAGFIGFYVSKRLLAAGHQVVGIDNLNDYYDVNLKQA
                     RLDLLKHDNFSFYKIDLADREKMAALFADERFDRVINLAAQAGVRYSLENPNAYADAN
                     LIGFLNILEGCRHNNVQHLLYASSSSVYGMNRKMPFSTDDSVDHPVSLYAATKKANEL
                     MAHTYSHLYGLPTTGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNFGKMKRDFT
                     YIDDIAEAIIRLQDVIPEKDPQWTVETGSPATSSAPYRVYNIGNSSPVELMDYINALE
                     EALGIEANKNMMPLQPGDVLETSADTKALYDVIGFKPETSVKEGVKNFVEWYRNFYKV
                     "
     gene            complement(14863..16029)
                     /gene="ugd"
                     /locus_tag="JN078_000021"
     CDS             complement(14863..16029)
                     /gene="ugd"
                     /locus_tag="JN078_000021"
                     /EC_number="1.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005227854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 6-dehydrogenase"
                     /protein_id="HAY9039355.1"
                     /translation="MKITISGTGYVGLSNGILIAQNHEVVALDIVQAKVDMLNKKQSP
                     IVDKEIEEYLATKDLNFRATTDKYDAYKNADYVIIATPTDYDPKTNYFNTSSVEAVIR
                     DVTEINPNAVMIIKSTIPVGFTESIKERFGIENVIFSPEFLREGKALYDNLHPSRIVI
                     GEQSDRAERFAALLQEGAIKQDIPILFTDSTEAEAIKLFANTYLAMRVAYFNELDSYA
                     ESLGLNSRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYQSVPNNLISAI
                     VDANRTRKDFIADSILARKPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKGVPVIV
                     YEPAMKEDDFFRSRVVRDLDAFKQEADVIISNRMSADLADVADKVYTRDLFGND"
     gene            complement(16278..17684)
                     /gene="gndA"
                     /locus_tag="JN078_000022"
     CDS             complement(16278..17684)
                     /gene="gndA"
                     /locus_tag="JN078_000022"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000043504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent phosphogluconate dehydrogenase"
                     /protein_id="HAY9039356.1"
                     /translation="MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIA
                     ENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGN
                     TFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIA
                     AVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLSNEELAQT
                     FTEWNNGELSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEP
                     LSLITESVFARYISSLKDQRVAASKVLSGPQAQPAGNKAEFIEKVRRALYLGKIVSYA
                     QGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPY
                     FKQIADDYQQALRDVVAYAVQNGIPVPTFAAAVAYYDSYRAAVLPANLIQAQRDYFGA
                     HTYKRIDKDGVFHTEWLD"
     gene            complement(17753..18859)
                     /gene="glf"
                     /locus_tag="JN078_000023"
     CDS             complement(17753..18859)
                     /gene="glf"
                     /locus_tag="JN078_000023"
                     /EC_number="5.4.99.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001533031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactopyranose mutase"
                     /protein_id="HAY9039357.1"
                     /translation="MQYEFIIIGSGLFGAVCAYELNKRNKRVLVIEKRDHIGGNIYTE
                     KVDDIHIHKYGAHIFHTNDQYIWNYINKFASFNRFTNSPLAYHKGKLYNLPFNMNTFY
                     QLWGTKTPSEAQDKIDLQRSKYSNITPTNLEEQALSLVGEDVYEKLIKGYTEKQWGRS
                     CSELPPFIIKRIPVRFTFDNNYFTDRFQGVPIGGYTQIIDKMLNGVDLLLNVDYLSEK
                     DKYNSMAERIIYTGPIDAYFDKKLGTLEYRSLKFITKKIEEANYQGNAVINYTEKDIP
                     FTRIIEHKHFDDSYETEYTFITEEYPIEWSEGQEPYYPINDKKNMDIYHKYRELSQME
                     SKVIFGGRLAEYKYYDMHQVIRSALNCVNKILHD"
     gene            complement(18892..19422)
                     /gene="rfbC"
                     /locus_tag="JN078_000024"
     CDS             complement(18892..19422)
                     /gene="rfbC"
                     /locus_tag="JN078_000024"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017490056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HAY9039358.1"
                     /translation="MKVQDTVLDGVKIIEPVVYGDNRGFFLEVYQKQRYQNLLNIEFD
                     FVQDNYSRSSKNVLRGLHFQKTKPQGKLVRVVRGEVFDVAVDIRKESPNYGQWIGVLL
                     SEMNKKQFWVPPGFAHGFVVLSEMADFEYKCTEYYDPEDECCLLWNDPELNIQWPLSN
                     PILSDKDMKGCLLKEL"
     gene            complement(19437..20606)
                     /locus_tag="JN078_000025"
     CDS             complement(19437..20606)
                     /locus_tag="JN078_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000340489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HAY9039359.1"
                     /translation="MDCLDEKDHLRDNHSLKIVLTANSSWYIYNFRRSTIKALINIGF
                     DVLVVVPDYEYKDSILKFGAKFEKVDLKPKSINIFTECTSLISYYKIIKKFNPQVILT
                     FTPKANIYCGLLAYKFDAKVIPNISGLGSAFVNSNTILSQIVKLLYKIALKKAAFVFF
                     QNEDDRQLLINSGCVNYEKTCRIFGSGVDLSKFLPSNKNLKQRSCVKFILVARLLYTK
                     GILHYLKAAEIIKSKYPNCSFSLLGAFEKNEKIITKELIEGFCTRGIVNYYGTSDDVA
                     SIMKHYDAIVLPSFYREGVPKALIEGASSGLAILTTDNVGCRDMVQNEVNGFLCQPND
                     LDSLVDIIEKYILLTDEMKNTMSIKSREFAESHCDENKIIEKYTNTINDVLNRNH"
     gene            complement(20569..21441)
                     /locus_tag="JN078_000026"
     CDS             complement(20569..21441)
                     /locus_tag="JN078_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001533034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HAY9039360.1"
                     /translation="MNRVAVIIVLYYPDVSKINKMIDSLGKKQCEILLVDNTPELHLE
                     SDVLCNNNIHYYHLGDNKGIAFAQNYGFIKAIGLGKSLFFTFDQDSCISKDYISSMLK
                     EYEYACSLRSNIAALGPTIINERNGKKYDREIKLGSQISETIHDVESIISSGALIPLE
                     AIINIGLNKVSWFIDLIDIEWSFRARKEGWNILVTDKVLISHNIGSKDINIMGIKTFT
                     VCSPFRLYYVYRNWLLALREPVFPLRYKLKKLITMPVRIIIYAFCERGGQRLNYIFKG
                     IKDGLLGRKGSFKG"
     gene            complement(22244..22876)
                     /locus_tag="JN078_000027"
     CDS             complement(22244..22876)
                     /locus_tag="JN078_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001533037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="haloacid dehalogenase-like hydrolase"
                     /protein_id="HAY9039361.1"
                     /translation="MLEHIVVFDVCGTLYLSNTTFDYVVFVHRKQKKYTKLIKCLLLR
                     SLFGKLLHKLRICSLRKHFLKTLEGYEKSTLEELANLFYDEFLIFKEKNEVMALLERY
                     KHEKIILMSASVDPVINVIAKNLNVEAVSSKLEFIDNKSTGLLEYNLTGIKHLQVNNP
                     VSLIVTDNFSDINLIKLADTAVIISKAKDKNKWRVLLNRFGVSKDKVRFM"
     gene            complement(22878..24059)
                     /locus_tag="JN078_000028"
     CDS             complement(22878..24059)
                     /locus_tag="JN078_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001564252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide repeat unit polymerase"
                     /protein_id="HAY9039362.1"
                     /translation="MTIFIAIIMLMYSGLLLSINKDIKSPSAILFFIWGGLLFLSGVN
                     GDITNYTLCIILFSCLSFSVGALLAKPYAPIFEHVFSYNINNTKALVLITNIISFVIL
                     IYTLIVFLYYYKGGFTESYINSRTEINYGDKSGLIKIYGYIYYLLYPLVYVWSFLYFK
                     NKYKKIEEGERARLPYNNRTFYFVFFTSLFYALLSTAKIKVLLLIIPIVFLRLFFSKI
                     SLKYLLVTVSGIIFFFYLSMLFLNKIDDSSGAFEALKYGLMNYSLANIFALDSVLQGK
                     AVVIDCNGDATCGLANFISYKEYKTNVFTIFYSLTKYSDFLYSLIFFFVIGFFHSSLY
                     NVAKKNKKTISVVICSILYFPLLFQFFDQLYMLMFYIYAIAMLYVICFCSRLTLTLKG
                     V"
     gene            complement(24062..24826)
                     /locus_tag="JN078_000029"
     CDS             complement(24062..24826)
                     /locus_tag="JN078_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001533039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4422 domain-containing protein"
                     /protein_id="HAY9039363.1"
                     /translation="MALFIACHKQTELPNHECYIPIHAGKKISGKMLDQVLGDDTGNN
                     ISCKNKNYCELTVIYWLWKNKLFNDDYIGLVHYRRYFGNVLSNFKFKEVRIYDRANIS
                     NKMKQYDIIIPVKESLKLSVVEHYRKFHNVEDLMLAKKIVDKLYPDYSVAFRELLEQK
                     KISLYNMFIMKAGIFDCYCDWLFSILDELEKEINLCRYDEYQSRVFGFIAERLLNVWI
                     NKNKEVFKVGEEFVINTDECSGRGAQLISQLRAKLK"
     gene            complement(24839..26086)
                     /locus_tag="JN078_000030"
     CDS             complement(24839..26086)
                     /locus_tag="JN078_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_050009647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flippase"
                     /protein_id="HAY9039364.1"
                     /translation="MKLVTSLNKNIFYLAILQGSYFILPLLTFPYLVRVLGPYSFGLL
                     GFCQATMQYLVMVTDYGFNWSATQDVSKSKNDKEKLTTIFWNVFFSKIILALSAIVIF
                     FGITFFIKELYYAQVVLISFIPMVLGNILYPVWFFQGLEKMKWITLCSLSARLLLIPL
                     TFLLVKNPQDIWLAALIQGGVNFIAGLIGFAIIINNNWIGKLVFDYDGIIYSLKSGWH
                     IFISTAAISLYTTTTVVVLGFICGPVSVGYFNAANTIRNAAQSLMNPIYQAVYPRINS
                     LFEENYAKSMNLLKKSFKGVLFISFSGSLLLCILSPIIIRYGVGDKYTESISILRILA
                     FLPFIISLSNFFGIQTMLTHGYKRQFSKILLICGVMHVIIIAPLIFFAGAYGAAMTVL
                     ITETVVASLMYLFLKRKKINLFK"
     gene            complement(26129..27013)
                     /gene="rfbA"
                     /locus_tag="JN078_000031"
     CDS             complement(26129..27013)
                     /gene="rfbA"
                     /locus_tag="JN078_000031"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000857538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HAY9039365.1"
                     /translation="MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTL
                     MLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPTPDGLAQAFIIGEEFIGG
                     DDCALVLGDNIFYGHDLPKLMDTAVDKESGATVFAYHVNDPERYGVVEFDKNGTAISL
                     EEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMM
                     GRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAYRKGFIDSEQVKILAEPL
                     KKNAYGQYLLNIINNKIS"
     gene            complement(27071..27970)
                     /gene="rfbD"
                     /locus_tag="JN078_000032"
     CDS             complement(27071..27970)
                     /gene="rfbD"
                     /locus_tag="JN078_000032"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HAY9039366.1"
                     /translation="MNILLFGKTGQVGWELQRALAPLGNLIALDVHSTDYCGDFSNPE
                     GVAETVKKIRPDVIVNAAAHTAVDKAESEPEFAQLLNATSVESIAKAANEVGAWVIHY
                     STDYVFPGTGEIPWLETDATAPLNVYGETKLAGEKALQEHCAKHLIFRTSWVYAGKGN
                     NFAKTMLRLAKEREELAVINDQFGAPTGAELLADCTAHAIRVALNKPEVAGMYHLVAS
                     GTTTWHDYAALVFEEARKAGIPLALNKLNAVPATAYPTPARRPHNSRLNTEKFQQNFA
                     LVLPDWQVGVKRMLNELFTTTAI"
     gene            complement(27970..29055)
                     /gene="rfbB"
                     /locus_tag="JN078_000033"
     CDS             complement(27970..29055)
                     /gene="rfbB"
                     /locus_tag="JN078_000033"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HAY9039367.1"
                     /translation="MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLA
                     DVSDSERYVFEHADICDAAAMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIV
                     GTYVLLEAARNYWSALDGDKKNSFRFHHISTDEVYGDLPHPDEVNNKEQLPLFTETTA
                     YAPSSPYSASKASSDHLVRAWKRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEG
                     KALPIYGKGDQIRDWLYVEDHARALYIVVTEGKAGETYNIGGHNEKKNIDVVLTICDL
                     LDEIVPKEKSYREQITYVADRPGHDRRYAIDAEKISRELGWKPQETFESGIRKTVEWY
                     LANAKWVENVKSGAYQSWIEQNYEGRQ"
     gene            complement(29427..30320)
                     /gene="galF"
                     /locus_tag="JN078_000034"
     CDS             complement(29427..30320)
                     /gene="galF"
                     /locus_tag="JN078_000034"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalF"
                     /protein_id="HAY9039368.1"
                     /translation="MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEI
                     VAAGIKEILLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNV
                     RQGEPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRS
                     QVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDIMAVGRYVLS
                     ADIWPELERTQPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY
                     GLRNLKEGAKFRKGIEKLLSE"
     gene            complement(30495..31889)
                     /gene="wcaM"
                     /locus_tag="JN078_000035"
     CDS             complement(30495..31889)
                     /gene="wcaM"
                     /locus_tag="JN078_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis protein WcaM"
                     /protein_id="HAY9039369.1"
                     /translation="MPFKKLSRRTFLTASSALAFLHTPFARALPARQSVNINDYNPHD
                     WIASFKQAFSEGQTVVVPGGLVCDNINTGIFIPAGKTLHILGSLRGNGRGRFVLQDGS
                     QVTGEEGGSMHNITLDVRGSDCTIKGLTMSGFGPVTQIYIGGKNKQVMRNLTIDNLTV
                     SHANYAILRQGFHNQIIGANITNCKFSDLQGDAIEWNVAINDSDILISDHVIERINCT
                     NGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVENGKHFVIRNIK
                     ARNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNF
                     RVNNIQLDNTHLAYKLRGIQISAGNAVSCVALTNIEMKRASLELHNKPQHLFMRNINV
                     MQESSVGPALSMNFDMRKDVRGVFMAKKETLLSLANVHAVNERGQSSVDIDRINHHIV
                     NVEKINFRLPERGE"
     gene            complement(31900..33120)
                     /gene="wcaL"
                     /locus_tag="JN078_000036"
     CDS             complement(31900..33120)
                     /gene="wcaL"
                     /locus_tag="JN078_000036"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaL"
                     /protein_id="HAY9039370.1"
                     /translation="MKVGFFLLKFPLSSETFVLNQITAFIDMGFEVEIVALQKGDTQN
                     THAAWTKYNLAARTRWLQDEPQGKVAKLRYRASQTLRGIHRKNTWQALNLKRYGAESR
                     NLILSAICGQVATPFHADVFIAHFGPAGVTAAKLRELDVIRGKIATIFHGIDISSREV
                     LNHYTPEYQQLFRRGDLMLPISELWAGRLQKMGCPREKIAVSRMGVDMTRFSPRPVKA
                     PATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQ
                     LEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVST
                     LHSGIPELVEADKSGWLVPENDARALAQRLAAFSQLDTDELTTVVKRAREKVEHDFNQ
                     QVINRELASLLQAL"
     gene            complement(33117..34397)
                     /gene="wcaK"
                     /locus_tag="JN078_000037"
     CDS             complement(33117..34397)
                     /gene="wcaK"
                     /locus_tag="JN078_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis pyruvyl transferase
                     WcaK"
                     /protein_id="HAY9039371.1"
                     /translation="MKLLILGNHTCGNRGDSAILRGLLDAINILNQHAEVDVMSRYPV
                     SSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVLRRRYQHQVLLSRVTDTGKLRNI
                     AIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCTFMAKKPLFMIGHSVGP
                     FQDEQFNQLANYVFGHCDALILRESVSLDLMKRSNITTAKVENGVDTAWLVDHHIEDF
                     TASYAVQHWLDVAAQQKAVAITLRELAPFDKRLGTTQEAYEKAFAGVVNRILDEGYQV
                     IALSTCTGIDSYNKDDRMVALNLRQHISDPARYHVVMDELNDLEMGKILGACELTVGT
                     RLHSAIISMNFSTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQ
                     LPALNARLNEAVSRERQTGMRMVQSVLERIGEAK"
     gene            complement(34565..36043)
                     /gene="wzxC"
                     /locus_tag="JN078_000038"
     CDS             complement(34565..36043)
                     /gene="wzxC"
                     /locus_tag="JN078_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M-antigen undecaprenyl disphosphate flippase"
                     /protein_id="HAY9039372.1"
                     /translation="MSLREKTISGAKWSAIATVIIIGLGLVQMTVLARIIDNHQFGLL
                     TVSLVIIALADTLSDFGIANSIIQRKEISHLELTTLYWLNVGLGIVVCVAVFLLSDAI
                     GDVLNNPDLAPLIKTLSLAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTV
                     VSAHFWPLAMTAILGYLVNSAVRTLLFGYFGRKIYRPGLHFSLASVAPNLRFGAWLTA
                     DSIINYLNTNLSTLVLARILGAGVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQ
                     DDTEKLRVNFYKLLSVVGIINFPALLGLMVVSNNFVPLVFGEKWNSIIPVLQLLCIVG
                     LLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIVIGGQMAGAIGVTLGFLLVQI
                     INTILSYFVMIKPVLGSSYRQYILSLWLPFYLSLPTLVVSYALGIVLKGQLALGMLLA
                     VQIIAGVLAFVVMIVLSRHPLVVEVKRQFCRSEKMKMLLRAG"
     gene            complement(36045..37439)
                     /gene="wcaJ"
                     /locus_tag="JN078_000039"
     CDS             complement(36045..37439)
                     /gene="wcaJ"
                     /locus_tag="JN078_000039"
                     /EC_number="2.7.8.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-phosphate glucose
                     phosphotransferase"
                     /protein_id="HAY9039373.1"
                     /translation="MTNLKKRERAKTNASLISMVQRFSDITIMFAGLWLVCEVSGLSF
                     LYMHLLVALITLVVFQMLGGITDFYRSWRGVRAATEFALLLQNWTLSVIFSAGLVAFN
                     NDFDTQLKIWLAWYGLTSIGLVVCRSCIRIGAGWLRNHGYNKRMVAVAGDLAAGQMLM
                     ESFRNQPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMQMCDGA
                     RVKKLVHQLADTTCSVLLIPDVFTFNILHSRLEEMNGVPVVPLYDTPLSGVNRLLKRA
                     EDIVLATLILLLISPVLCCIALAVKLSSPGPVIFRQTRYGMDGKPIKVWKFRSMKVME
                     NDKVVTQATQNDPRVTKVGNFLRRTSLDELPQFINVLTGGMSIVGPRPHAVAHNEQYR
                     QLIEGYMLRHKVKPGITGWAQINGWRGETDTLEKMEKRVEFDLEYIREWSVWFDIKIV
                     FLTVFKGFVNKAAY"
     gene            complement(37494..38864)
                     /gene="cpsG"
                     /locus_tag="JN078_000040"
     CDS             complement(37494..38864)
                     /gene="cpsG"
                     /locus_tag="JN078_000040"
                     /EC_number="5.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase CpsG"
                     /protein_id="HAY9039374.1"
                     /translation="MKKLTCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLKPKTIVLG
                     GDVRLTSETLKLALARGLQDAGVDVLDIGMSGTEEIYFATFHLGVDGGIEVTASHNPM
                     DYNGMKLVREGARPISGDTGLRDVQRLAEANDFPPVDETKRGRYQQINLRDAYVDHLF
                     GYINVKNLTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIP
                     NPLLPECRDDTRNAVIKHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLE
                     KNPGAKIIHDPRLSWNTIDVVTAAGGTPVMSKTGHAFIKERMRKEDAIYGGEMSAHHY
                     FRDFAYCDSGMIPWLLVAELVCLKGKTLGELVRDRMAAFPASGEINSKLAQPVEAINR
                     VEQHFSREALSVDRTDGISMTFADWRFNLRTSNTEPVVRLNVESRGDVPLMEARTRTL
                     LTLLNE"
     gene            complement(39057..40493)
                     /gene="cpsB"
                     /locus_tag="JN078_000041"
     CDS             complement(39057..40493)
                     /gene="cpsB"
                     /locus_tag="JN078_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-1-phosphate guanyltransferase"
                     /protein_id="HAY9039375.1"
                     /translation="MAQSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTT
                     ICRLNGVECESPVVICNEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAALAA
                     KRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGY
                     IRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELK
                     KYRPDILDACEQAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAG
                     WSDVGSWSSLWEISAHTAEGNVCHGDVINHKTENSYVYAESGLVTTVGVKDLVVVQTK
                     DAVLIADRNAVQDVKKVVEQIKADGRHEHRVHREVYRPWGKYDSIDAGDRYQVKRITV
                     KPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENPGKI
                     PLDLIEVRSGSYLEEDDVVRFADRYGRV"
     gene            complement(40496..41719)
                     /gene="wcaI"
                     /locus_tag="JN078_000042"
     CDS             complement(40496..41719)
                     /gene="wcaI"
                     /locus_tag="JN078_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis fucosyltransferase
                     WcaI"
                     /protein_id="HAY9039376.1"
                     /translation="MKILVYGINYSPELTGIGKYTGEMVEWLAAQGHEVRVITAPPYY
                     PQWQVGENYSAWRYKREEGAATVWRCPLYVPKQPSTLKRLLHLGSFAVSSFFPLMAQR
                     RWKPDRIIGVVPTLFCTPGMRLLAKLSGARTVLHIQDYEVDAMLGLGLAGKGKGGKVA
                     QLATAFERSGLHNVDNVSTISRSMMNKAIEKGVAAENVIFFPNWSEIARFQHVADADV
                     DALRNQLDLPDNKKIILYSGNIGEKQGLENVIEAADRLRDEPLIFAIVGQGGGKARLE
                     KMAQQRGLRNMQFFPLQSYDALPALLKMGDCHLVVQKRGAADAVLPSKLTNILAVGGN
                     AVITAEAHTELGQLCETFPGIAVCVEPESVEALVAGIRQALLLPKHNTVAREYAERTL
                     DKENVLRQFINDIRG"
     gene            complement(41716..42195)
                     /locus_tag="JN078_000043"
     CDS             complement(41716..42195)
                     /locus_tag="JN078_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707946.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose mannosyl hydrolase"
                     /protein_id="HAY9039377.1"
                     /translation="MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGY
                     WFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHY
                     VVLGFRFRVAEEELLMPDEQHDDYRWLTPDALLASNDVHANSRAYFLAEKRAGVPGL"
     gene            complement(42195..43163)
                     /gene="fcl"
                     /locus_tag="JN078_000044"
                     /gene_synonym="wcaG"
                     /gene_synonym="yefB"
     CDS             complement(42195..43163)
                     /gene="fcl"
                     /locus_tag="JN078_000044"
                     /gene_synonym="wcaG"
                     /gene_synonym="yefB"
                     /EC_number="1.1.1.271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HAY9039378.1"
                     /translation="MSRQRIFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDS
                     RAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKL
                     LFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRS
                     VMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMA
                     AASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASK
                     PDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLENQDRFRGE"
     gene            complement(43166..44287)
                     /gene="gmd"
                     /locus_tag="JN078_000045"
     CDS             complement(43166..44287)
                     /gene="gmd"
                     /locus_tag="JN078_000045"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HAY9039379.1"
                     /translation="MSKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERV
                     DHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYT
                     ADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVA
                     KLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL
                     GNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRF
                     EGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWK
                     PEITLREMVSEMVANDLEAAKKHSLLKSHGYDVAIALES"
     gene            complement(44314..44862)
                     /gene="wcaF"
                     /locus_tag="JN078_000046"
     CDS             complement(44314..44862)
                     /gene="wcaF"
                     /locus_tag="JN078_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis acetyltransferase
                     WcaF"
                     /protein_id="HAY9039380.1"
                     /translation="MQDLSGFSVPKGFRGGNAIKVQLWWAVQATIFAWSPQVLYRWRA
                     FLLRLFGAKIGKNVVIRPSVKITYPWKLTLGDYAWVGDDVNLYTLGEITIGAHSVISQ
                     KSYLCTGSHDHASQHFTINATPIVIGEKCWLATDVFVAPGVTIGDGTVVGARSSVFKT
                     LPANVVCRGNPAVVIRERVETE"
     gene            complement(44878..45624)
                     /gene="wcaE"
                     /locus_tag="JN078_000047"
     CDS             complement(44878..45624)
                     /gene="wcaE"
                     /locus_tag="JN078_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaE"
                     /protein_id="HAY9039381.1"
                     /translation="MLLSIITVAFRNLEGIVKTHASLAHLAQAEDISFEWIVVDGGSN
                     DGTREYLENLNGIYNLRFVSEPDNGIYDAMNKGITMAQGKFALFLNSGDIFHQDAANF
                     VRKLKMQKDNMMITGDALLDFGDGHKIKRSAKPGWYIYHSLPASHQAIFFPVSGLKKW
                     RYDLEYKVSSDYALAAKMYKAGYAFKKLNGLVSEFSMGGVSTTNNMELCADAKKVQRQ
                     ILHVPGFWAELSWHLRQRTTSKTKALYNKV"
     gene            complement(45635..46852)
                     /gene="wcaD"
                     /locus_tag="JN078_000048"
     CDS             complement(45635..46852)
                     /gene="wcaD"
                     /locus_tag="JN078_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative colanic acid polymerase WcaD"
                     /protein_id="HAY9039382.1"
                     /translation="MSTPIRICSYLLLPLIYLLVNVKIAQLGESFPITIVTFLPVLLL
                     LFLERISVKKLMIALGIGAGLTAFNYLFGQSLDASKYVTSTMLFVYIVIIIGMVWSIR
                     FKTISPHNHRKILRFFYLVVGLVVALAVVEMAQIILTGGSSIMESISKYLIYSNSYVL
                     NFIKFGGKRTTALYFEPAFFALALISIWLSIKQFGIKTPKTDAMILAGIILSGSFSGV
                     MTFILFYLLEWAFQYLNKEAIKKKLPLALISLAVFLVGVVIAFPYISTRLGDLGTEGS
                     SSYYRIVGPLVMVGYSLTHIDGVVRFGSLYEYVASFGIFNGADVGKTIDNGLYLLIIY
                     FSWFAVFLSLWYMGKVIKMMINAFGDNRNFRVQLYLFTPVSLFFTGSIFSPEYAFLIV
                     CPFILRKALNITR"
     gene            complement(46827..48044)
                     /gene="wcaC"
                     /locus_tag="JN078_000049"
     CDS             complement(46827..48044)
                     /gene="wcaC"
                     /locus_tag="JN078_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaC"
                     /protein_id="HAY9039383.1"
                     /translation="MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGK
                     ESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFGNFNELYRTITRTPGPVVLHFHV
                     LHSYWLNLKSVVRFCEKVKNHKPDVTVVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP
                     TLNNYPPVKIDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIIN
                     NGIDMATEAILADLPPVRETQGKPKIAVVAHDLRYDGKTNQQLVREMMALGDKIELHT
                     FGKFSPFTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVI
                     ATHSDAAREVLQKSGGKTVSEEDVLQLVQLSKPEIAQAIFGTTLAEFSQRSRAAYSGQ
                     QMLEEYVNSYQNL"
     gene            complement(48041..48529)
                     /gene="wcaB"
                     /locus_tag="JN078_000050"
     CDS             complement(48041..48529)
                     /gene="wcaB"
                     /locus_tag="JN078_000050"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis acetyltransferase
                     WcaB"
                     /protein_id="HAY9039384.1"
                     /translation="MLEDLRANSWSLRPCCMVLAYRVAHFCSVWRKKNVLNNLWAAPL
                     LVLYRIITECFFGYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRG
                     ADNMACPHIGNGVELGANVIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARVKV
                     IK"
     gene            complement(48532..49371)
                     /gene="wcaA"
                     /locus_tag="JN078_000051"
     CDS             complement(48532..49371)
                     /gene="wcaA"
                     /locus_tag="JN078_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaA"
                     /protein_id="HAY9039385.1"
                     /translation="MKDNPLISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCS
                     TSWEQLQQYVTALNDPRITYIHNDINSGACAVRNQAIMLAQGEYITGIDDDDEWTPNR
                     LSVFLAHKQQLVTHAFLYANDYVCQGEVYSQPASLPLYPKSPYSRRLFYKRNIIGNQV
                     FTWAWRFKECLFDTELKAAQDYDIFLRMVVEYGEPWKVEEATQILHINHGEMQITSSP
                     KKFSGYFHFYRKHKDKFDRASKKYQLFTLYQIRNKRMTWRTLLTLLSVRNGKRLADGI
                     RGR"
     gene            complement(49549..51711)
                     /gene="wzc"
                     /locus_tag="JN078_000052"
     CDS             complement(49549..51711)
                     /gene="wzc"
                     /locus_tag="JN078_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein kinase Wzc"
                     /protein_id="HAY9039386.1"
                     /translation="MTEKVKQHAAPVTGSDEIDIGRLVGTVIEARWWVIGITAVFALC
                     AVVYTFFATPIYSADALVQIEQNSGNSLVQDIGSALANKPPASDAEIQLIRSRLVLGK
                     TVDDLDLDIAVSKNTFPIFGAGWDRLMGRQNETVKVTTFNRPKEMADQVFTLNVLDDK
                     NYTLSSDGGFSARGQAGQMLKKEGVTLMVEAIHARPGSEFTVTKYSTLGMINQLQNSL
                     TVTENGKDAGVLSLTYTGEDREQIRDILNSIARNYQEQNIERKSAEASKSLAFLAQQL
                     PEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLY
                     TKVHPAYRTLLEKRQALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNK
                     EQELKITEASTVGDVRIVDPAITQPGVLKPKKELIILGAIILGLMLSIVGVLLRSLFN
                     RGIESPQVLEEHGISVYASIPLSEWQKARDSVKTIKGIKRYKQSQLLAMGNPTDLAIE
                     AIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMR
                     KGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKFDLIPRGQVPPNPSELLMSER
                     FAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSR
                     FEQNGIPVKGVILNSIFRRASAYQDYGYYEYEYKSDAK"
     gene            complement(51714..52157)
                     /gene="wzb"
                     /locus_tag="JN078_000053"
     CDS             complement(51714..52157)
                     /gene="wzb"
                     /locus_tag="JN078_000053"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase Wzb"
                     /protein_id="HAY9039387.1"
                     /translation="MFNNILVVCVGNICRSPTAERLLQRYHPELKVESAGLGALVGKG
                     ADPTAISIAAEHQLSLEGHCARQISRRLCRNYDLILTMEKRHIERLCEMAPEMRGKVM
                     LFGHWDNECEIPDPYRKSRETFAAVYTLLERSARQWAQALNAEQV"
     gene            complement(52163..53302)
                     /locus_tag="JN078_000054"
     CDS             complement(52163..53302)
                     /locus_tag="JN078_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HAY9039388.1"
                     /translation="MMKSKMKLMPLLVSVTLISGCTVLPGSNMSTMGKDVIKQQDADF
                     DLDKMVNVYPLTPRLIDQLRPRPNVARPNMTLESEIANYQYRVGPGDVLNVTVWDHPE
                     LTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVHVVGKTLAEIRSDITGRLATYIADPQ
                     VDVNIAAFRSQKTYISGQVNKSGQQAITNVPLTILDAINAAGGLTDTADWRNVVLTHN
                     GREERISLQVLMQNGDLNQNRLLYPGDILYVPRNDDLKVFVMGEVKKQSTLKMDFSGM
                     TLTEALGNAEGIDMTTSNASGIFVIRPLKGEGGRNGKIANIYQLDMSDATSLVMATEF
                     RLQPYDVVYVTTAPVSRWNRLINQLLPTISGVRYMTDTASDIHNW"
     gene            53961..55544
                     /locus_tag="JN078_000055"
     CDS             53961..55544
                     /locus_tag="JN078_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310895.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HAY9039389.1"
                     /translation="MEWIADPSIWAGLITLIVIELVLGIDNLVFIAILAEKLPPKQRD
                     RARVTGLLLAMLMRLLLLASISWLVTLTQPLFSFRSFTFSARDLIMLFGGFFLLFKAT
                     MELNERLEGKDSNNPTQRKGAKFWGVVTQIVVLDAIFSLDSVITAVGMVDHLLVMMAA
                     VVIAISLMLMASKPLTQFVNSHPTIVILCLSFLLMIGFSLVAEGFGFVIPKGYLYAAI
                     GFSVMIEALNQLAIFNRRRFLSANQTLRQRTTEAVMRLLSGQKEDAELDAETASMLVD
                     HGNQQIFNPQERRMIERVLNLNQRTVSSIMTSRHDIEHIDLNAPEDEIRQLLERNQHT
                     RLVVTDGDDAEDLLGVVHVIDLLQQSLRGEPLNLRVLIRQPLVFPETLPLLPALEQFR
                     NARTHFAFVVDEFGSVEGIVTLSDVTETIAGNLPNEVEEIDARHDIQKNADGSWTANG
                     HMPLEDLVQYVPLPLDEKREYHTIAGLLMEYLQRIPKPGEEVQVGDYLLKTLQVESHR
                     VQKVQIIPLHKDGELEYEV"
     gene            complement(55818..57671)
                     /gene="asmA"
                     /locus_tag="JN078_000056"
     CDS             complement(55818..57671)
                     /gene="asmA"
                     /locus_tag="JN078_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane assembly protein AsmA"
                     /protein_id="HAY9039390.1"
                     /translation="MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRNYMVKQVAARSG
                     YQLQLDGPLRWHVWPQLSILSGRMSLTAQGASQPLVRADNMRLDVALLPLLSHQLSVK
                     QVMLKGAVIQLTPQTEVVRSEDAPVAPRDNTLPDLSDDRGWSFDISSLKVADSVLVFQ
                     HEDDEQVTIRNIRLQMEQDPQHRGSFEFSGRVNRDQRDLTISLNGTVDASDYPHDLTA
                     AIEQINWQLQGADLPKQGIHGQGSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVTL
                     TEKPEWQLRLQFPQLNLDNLIPLNETANGENGAAQQGQSQSTLPRPVISSRIDEPAYQ
                     GLQGFTADILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNGGQVSLPGTLD
                     ATSINPRINFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQG
                     QAHVEMTDTRMEGMNFQQMIQQAVERNGGDVKAAENFDNVTRLDRFTTDLTLKDGVVT
                     LNDMQGQSPVLALSGAGTLNLAEQTCDTQFDIRVVGGWNGESKLIDFLKETPVPLRVY
                     GNWQQLNYSLQVDQLLRKHLQDEAKRRLNDWAERNKDSRNGKDVKKLLEKM"
     gene            complement(57693..58274)
                     /gene="dcd"
                     /locus_tag="JN078_000057"
     CDS             complement(57693..58274)
                     /gene="dcd"
                     /locus_tag="JN078_000057"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HAY9039391.1"
                     /translation="MRLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTF
                     RGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPAD
                     LVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSF
                     EPLSGPAARPYNRREDAKYRNQQGAVASRIDKD"
     gene            complement(58366..59007)
                     /gene="udk"
                     /locus_tag="JN078_000058"
     CDS             complement(58366..59007)
                     /gene="udk"
                     /locus_tag="JN078_000058"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HAY9039392.1"
                     /translation="MTDQSHQCVIIGIAGASASGKSLIASTLYRELREQVGDEHIGVI
                     PEDCYYKDQSHLSMEERVKTNYDHPSAMDHNLLLEHLQALKRGSAIDLPVYSYVEHTR
                     MKETVTVEPKKVIILEGILLLTDARLRDELNFSIFVDTPLDICLMRRIKRDVNERGRS
                     MDSVMAQYQKTVRPMFLQFIEPSKQYADIIVPRGGKNRIAIDILKAKISQFFE"
     gene            59325..62622
                     /locus_tag="JN078_000059"
                     /pseudo
     CDS             59325..62622
                     /locus_tag="JN078_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416571.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
     gene            complement(62661..63518)
                     /gene="alkA"
                     /locus_tag="JN078_000060"
     CDS             complement(62661..63518)
                     /gene="alkA"
                     /locus_tag="JN078_000060"
                     /EC_number="3.2.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000288352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase 2"
                     /protein_id="HAY9039393.1"
                     /translation="MYTLNWQPPYDWSWMLGFLAARAVSGVETVADDYYARSLAVGEY
                     RGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAAR
                     PGLRLPGCIDAFEQGVRAILGQLVSVAMAAKLTAKVVQLYGERLDDFPEYICFPTPQR
                     LAAADPQALKALGMPLKRAEALIHLANAALEGSLPMTIPGDVEQAMKTLQTFPGIGRW
                     TANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEG
                     WQPDGTDEL"
     gene            63652..65004
                     /gene="yegD"
                     /locus_tag="JN078_000061"
     CDS             63652..65004
                     /gene="yegD"
                     /locus_tag="JN078_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HAY9039394.1"
                     /translation="MFIGFDYGTANCSVAVMRDGKPHLLKMENDSTLLPSMLCAPTRE
                     AVSEWLYRHHDVPADDDETQALLRRAIRYNREEDIDVTAKSVQFGLSSLAQYIDDPEE
                     VWFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIRQQAQAQLPEAITQAVIGRPINF
                     QGLGGDEANAQAQGILERAAKRAGFRDVVFQYEPVAAGLDYEATLQEEKRVLVVDIGG
                     GTTDCSLLLMGPQWRSRLDREASLLGHSGCRIGGNDLDIALAFKNLMPLLGMGGETEK
                     GIALPILPWWNAVAINDVPAQSDFYSSANGRLLNDLVRDAREPEKVALLQKVWRQRLS
                     YRLVRSAEESKIALSNAAETRASLPFISDELATLISQQGLESALSQPLARILEQVQLA
                     LDNAQEKPDVIYLTGGSARSPLIKKALAEQLPGISIAGGDDFGSVTAGLARWAEVVFR
                     "
     gene            complement(65016..66938)
                     /gene="yegI"
                     /locus_tag="JN078_000062"
     CDS             complement(65016..66938)
                     /gene="yegI"
                     /locus_tag="JN078_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310906.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase YegI"
                     /protein_id="HAY9039395.1"
                     /translation="MKPTLYTATGECVTPGRELGKGGEGAVYDIEEFVDSVAKIYHTP
                     PPASKQDKLAFMAATADAQLLNYVAWPQATLHGGRGGKVIGFMMPKVSGKEPIHMIYS
                     PAHRRQSYPHCAWDFLLYVARNIASSFATVHEHGHVVGDVNQNSFMVGRDSKVVLIDS
                     DSFQINVNGTLHLCEVGVSHFTPPELQTLSSFVGFERTENHDNFGLALLIFHVLFGGR
                     HPYSGVPLISDAGNALETDITHFRYAYASDNQRRGLKPPPRSIPLSMLPSDVEAMFQQ
                     AFTESGVATGRPTAKAWVAALDSLRQQLKKCPVSAMHVYPAHLTDCPWCTLDNQGVIY
                     FVDLGEEVITTSGDFVLAKVWAMVMASVAPPALQLPLPDHFQPTGRPLPLGLLRREYI
                     ILIEIALSALSLLLCGLQAEPRYIILVPVLSAIWIIGSLTSKAYKAEIQQRREAFNRA
                     KMDYEHLVSQIQQLGGLEGFIAKRAMLEKMKDEILGLPEEEKRALAALYDTARERQKQ
                     KFLEGFFASIPGVGPARKAALRSFGIETAADVTRRGVKQVKGFGDHLTQAVIDWKASC
                     DRRFVFRPNEAVTPADRQAVMAAKRHRLESALTVGATELQRFRLYAPARTMPLMEPLR
                     QAAEKLAQAQADLSRC"
     gene            complement(66935..67696)
                     /gene="pphC"
                     /locus_tag="JN078_000063"
     CDS             complement(66935..67696)
                     /gene="pphC"
                     /locus_tag="JN078_000063"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-serine/threonine phosphatase PphC"
                     /protein_id="HAY9039396.1"
                     /translation="MSWRLVYASAVGTSHISADLPCQDACQMQVVWLNDQQPLLVMFL
                     ADGAGSVSQGGEGATLAVNEAMAFMVQKVQDGELGLNDVLATNMVLTIRQRLFAEAEA
                     KALAVRDFACTFLGLISSPDGTLIMQIGDGGVVVDLGHGLQLPLTPMVGEYANMTHFI
                     TDEDAVSRLETFTSTGRAHKVAAFTDGIQRLALNMLDNSPHVPFFTPFFNGLASVTQE
                     QLDLLPELLKQFLSSPAVNERTDDDKTLALALWLP"
     gene            complement(67693..68352)
                     /locus_tag="JN078_000064"
     CDS             complement(67693..68352)
                     /locus_tag="JN078_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HAY9039397.1"
                     /translation="MSEQITFATSDFASNPEPRCPCILLLDVSGSMSGRPINELNAGL
                     VTFRDELLADPLALKRVELGIVTFGPVHVEQPFTSAANFFPPILFAQGDTPMGAAITK
                     ALDMVEERKREYRANGISYYRPWIFLITDGAPTDEWQAAANKVFQGEEDKKFAFFSIG
                     VQGADMKTLAQISVRQPLPLQGLQFRELFSWLSSSLRSVSRSTPGTEVVLEAPKGWTS
                     V"
     gene            complement(68573..68632)
                     /gene="ibsA"
                     /locus_tag="JN078_000065"
     CDS             complement(68573..68632)
                     /gene="ibsA"
                     /locus_tag="JN078_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin IbsA"
                     /protein_id="HAY9039398.1"
                     /translation="MMKHVIILVILLVISFQAY"
     gene            complement(68905..68961)
                     /locus_tag="JN078_000066"
     CDS             complement(68905..68961)
                     /locus_tag="JN078_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HAY9039399.1"
                     /translation="MMKLLIIVVLLVISFPAY"
     gene            complement(69233..69289)
                     /locus_tag="JN078_000067"
     CDS             complement(69233..69289)
                     /locus_tag="JN078_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HAY9039400.1"
                     /translation="MMKLLIIVVLLVISWPAY"
     gene            69568..70815
                     /gene="mdtA"
                     /locus_tag="JN078_000068"
     CDS             69568..70815
                     /gene="mdtA"
                     /locus_tag="JN078_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416578.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter subunit MdtA"
                     /protein_id="HAY9039401.1"
                     /translation="MKGSYKSRWVIVIVVVIAAIAAFWFWQGRNDSRSAAPGATKQAQ
                     QSPAGGRRGMRSGPLAPVQAATAVEQAVPRYLTGLGTIIAANTVTVRSRVDGQLMALH
                     FQEGQQVKAGDLLAEIDPSQFKVALAQTQGQLAKDKATLANARRDLARYQQLAKTNLV
                     SRQELDAQQALVSETEGTIKADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQIS
                     SGDTTGIVVITQTHPIDLVFTLPESDIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTL
                     LSLDNQIDATTGMIKVKARFNNQNDVLFPNQFVNARMLVDTEQNAVVIPTAALQMGNE
                     GHFVWVLNSENKVSKHLVTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVVE
                     AQSATTPEEKATSREYAKKGARS"
     gene            70815..73937
                     /gene="mdtB"
                     /locus_tag="JN078_000069"
     CDS             70815..73937
                     /gene="mdtB"
                     /locus_tag="JN078_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit MdtB"
                     /protein_id="HAY9039402.1"
                     /translation="MQVLPPSSTGGPSRLFIMRPVATTLLMVAILLAGIIGYRALPVS
                     ALPEVDYPTIQVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITL
                     QFQLTLPLDVAEQEVQAAINAATNLLPSDLPNPPVYSKVNPADPPIMTLAVTSTAMPM
                     TQVEDMVETRVAQKISQISGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT
                     GANVNSAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAE
                     NSWLGAWANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTT
                     NIRASVDDTQFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFS
                     INNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLIFS
                     LIAVLIPLLFMGDIVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQN
                     RFSRASEKMFDRIIAAYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQD
                     NGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQ
                     INLKPLDERDDRVQKVIARLQTAVDKVPGVDLFLQPTQDLTIDTQVSRTQYQFTLQAT
                     SLDALSTWVPQLMEKLQQLPQLSDVSSDWQDKGLVAYVNVDRDSASRLGISMADVDNA
                     LYSAFGQRLISTIYTQANQYRVVLEHNTEITPGLAALDTIRLTSSDGGVVPLSSIAKV
                     EQRFAPLSINHLDQFPVTTISFNVPDNYSLGDAVQAIMDTEKTLNLPVDITTQFQGST
                     LAFQSALGSTVWLIVAAVVAMYIVLGILYESFIHPITILSTLPTAGVGALLALMIAGS
                     ELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQACLLRFRPILMTT
                     LAALLGALPLMLSTGVGAELRRPLGIGMVGGLIVSQVLTLFTTPVIYLLFDRLALWTK
                     SRFARHEEEA"
     gene            73938..77015
                     /gene="mdtC"
                     /locus_tag="JN078_000070"
     CDS             73938..77015
                     /gene="mdtC"
                     /locus_tag="JN078_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit MdtC"
                     /protein_id="HAY9039403.1"
                     /translation="MKFFALFIYRPVATILLSVAITLCGILGFRMLPVAPLPQVDFPV
                     IMVSASLPGASPETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDIN
                     GAARDVQAAINAAQSLLPSGMPSRPTYRKANPSDAPIMILTLTSDTYSQGKLYDFAST
                     QLAPTISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQG
                     ALEDGTHRWQIQTNDELKTAAEYQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGMTN
                     AKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV
                     EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMAL
                     TIATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLL
                     LMGGLPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRML
                     VALQQGYGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQA
                     DQSISFQAMRGKLQDFMKIIRDDPAVDNVTGFTGGSRVNSGMMFITLKPRDERSETAQ
                     QIIDRLRVKLAKEPGANLFLMAVQDIRVGGRQSNASYQYTLLSDDLAALREWEPKIRK
                     KLATLPELADVNSDQQDNGAEMNLVYDRDTMARLGIDVQAANSLLNNAFGQRQISTIY
                     QPMNQYKVVMEVEPRYTQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGL
                     SAASTISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILI
                     IAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLI
                     GIVKKNAIMMVDFALEAQRHGNLTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSG
                     GDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSRKPKQTVTE"
     gene            77016..78432
                     /locus_tag="JN078_000071"
                     /pseudo
     CDS             77016..78432
                     /locus_tag="JN078_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416581.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            78429..79832
                     /gene="baeS"
                     /locus_tag="JN078_000072"
     CDS             78429..79832
                     /gene="baeS"
                     /locus_tag="JN078_000072"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     BaeS"
                     /protein_id="HAY9039404.1"
                     /translation="MKFWRPGITGKLFLAIFATCIVLLISMHWAVRISFERGFIDYIK
                     HGNEQRLQLLSDALGEQYAQHGNWRFLRNNDRFVFQILRSFEHDNSEDKPGPGMPPHG
                     WRTQFWVVDQNNKVLVGPRAPIPPDGTRRPILVNGAEVGAVIASPVERLTRNTDINFD
                     KQQRQTSWLIVALATLLAALATFLLARGLLAPVKRLVDGTHKLAAGDFTTRVTPTSED
                     ELGKLAQDFNQLASTLEKNQQMRRDFMADISHELRTPLAVLRGELEAIQDGVRKFTPE
                     TVASLQAEVGTLTKLVDDLHQLSMSDEGALAYQKAPVDLIPLLEVAGGAFRERFASRG
                     LKLQFSLPDSITVFGDRDRLMQLFNNLLENSLRYTDSGGSLKISAEQHDKTVRLTFAD
                     SAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGG
                     VSITVELPLERDLQREV"
     gene            79829..80551
                     /gene="baeR"
                     /locus_tag="JN078_000073"
     CDS             79829..80551
                     /gene="baeR"
                     /locus_tag="JN078_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator BaeR"
                     /protein_id="HAY9039405.1"
                     /translation="MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGD
                     QVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEI
                     GADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLD
                     LTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAE
                     QSFIRAVYGVGYRWEADACRIV"
     gene            80742..81074
                     /locus_tag="JN078_000074"
     CDS             80742..81074
                     /locus_tag="JN078_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310915.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YegP family protein"
                     /protein_id="HAY9039406.1"
                     /translation="MAGWFELSKSSDNQFRFVLKAGNGETILTSELYTSKASAEKGIA
                     SVRSNSPQEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGT
                     SQTVKDNT"
     gene            81197..82597
                     /locus_tag="JN078_000075"
     CDS             81197..82597
                     /locus_tag="JN078_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000911981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HAY9039407.1"
                     /translation="MLKGLRTLFSRRVLFNVEMNNSVDCELLLIQQQLQALIAEPGNY
                     LAHDCDLNDTLVLCQLTHHHNGYIREKAVQYLGHKEDVAAIEELLLAANDWVKEVRLA
                     ATIALRHLMKDKNAAAFAVNLPMIRNLLQCQRYDHRAFVDEILRYLLTENNRPQLTYW
                     LTCPDKKLSRAVLQTLIEYGYFNDESSLLSILDKPDEGLRMLATTHWLRQQLPLSEAV
                     LTRLLKDRWPRIRQATLFSLTDRAIEMPPALHSTLLLDNNMLIRLRAKNMLHEVMDVP
                     QFWRHVVTSAEYTPSQRRAALYGLDSIHDPNILKLAEWGLSQNVFPLRLAAMHILAKA
                     NPRCGVKETILTTLANPDAAGLRFMVNICVWCRVPLTFEEIRQLQENAPSVKHACAYC
                     RLYHNLNKWDGLILLLQSQHKLTEEFAGKQLAIWQRNFNLSGIQPNALQRQQLQALFT
                     RNPELHNRLWGYIPFK"
     gene            82918..84279
                     /locus_tag="JN078_000076"
     CDS             82918..84279
                     /locus_tag="JN078_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HAY9039408.1"
                     /translation="MFKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFN
                     HENLQLGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLKPVVEMGPDALIMSDPGLIM
                     LVREYFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEIEEIRNQVPDME
                     IEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYNVQEGKEDDVGNIVHKY
                     EPIPVQNVEPTLGIGAPTDKVFMIEEAQRPGEYMTAFEDEHGTYIMNSKDLRAIAHVE
                     RLTKMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDTSLLETLEGLAHRGY
                     TEGFLRRHTHDDYQNYEYGYSVSDRQQFVGEFTGERKGDLAAVAVKNKFSVGDSLELM
                     TPQGNINFTLEHMENAKGVAMPVAPGDGYTVWLPVPQDLELNYALLMRNFSGETTRNP
                     HGK"
     gene            complement(84609..84926)
                     /locus_tag="JN078_000077"
     CDS             complement(84609..84926)
                     /locus_tag="JN078_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416589.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9039409.1"
                     /translation="MKKIAAISLISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDN
                     QYYTEAEASLARSRISGAENIVKNDATHFCVTQGKKMQIVELKTEGVGLHGVARLTFK
                     CGE"
     gene            85340..86238
                     /gene="yegS"
                     /locus_tag="JN078_000078"
                     /pseudo
     CDS             85340..86238
                     /gene="yegS"
                     /locus_tag="JN078_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310919.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lipid kinase YegS"
     gene            complement(86320..87099)
                     /locus_tag="JN078_000079"
     CDS             complement(86320..87099)
                     /locus_tag="JN078_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HAY9039410.1"
                     /translation="MTMNSFERRNKIIQLVNEQGTVLVQDLAGVFAASEATIRADLRF
                     LEQKGVVTRFHGGAAKIMSGNSETETQEVGFKERFQLASAPKNRIAQAAVKMIHEGMT
                     VILDSGSTTMLIAEGLMTAKNITVITNSLPAAFALSENKDITLVVCGGTVRHKTRSMH
                     GSIAERSLQDINADLMFVGADGIDAVNGITTFNEGYSVSGAMVTAANKVIAVLDSSKF
                     NRRGFNQVLPIEKIDIIITDDAVSEVDKLALQKTRVKLITV"
     gene            complement(87199..88239)
                     /gene="gatD"
                     /locus_tag="JN078_000080"
     CDS             complement(87199..88239)
                     /gene="gatD"
                     /locus_tag="JN078_000080"
                     /EC_number="1.1.1.251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HAY9039411.1"
                     /translation="MKSVVNDTDGIVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPR
                     IFKNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQ
                     CAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCE
                     NKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGSMQTFNSSEMSAP
                     QMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKI
                     LRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFTQAVRDIA
                     RNAMPGKVLLIP"
     gene            complement(88287..89642)
                     /locus_tag="JN078_000081"
     CDS             complement(88287..89642)
                     /locus_tag="JN078_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIC"
                     /protein_id="HAY9039412.1"
                     /translation="MFSEVMRYILDLGPTVMLPIVIIIFSKILGMKAGDCFKAGLHIG
                     IGFVGIGLVIGLMLDSIGPAAKAMAENFDLNLHVVDVGWPGSSPMTWASQIALVAIPI
                     AILVNVAMLLTRMTRVVNVDIWNIWHMTFTGALLHLATGSWMIGMAGVVIHAAFVYKL
                     GDWFARDTRNFFELEGIAIPHGTSAYMGPIAVLVDAIIEKIPGVNRIKFSADDIQRKF
                     GPFGEPVTVGFVMGLIIGILAGYDVKGVLQLAVKTAAVMLLMPRVIKPIMDGLTPIAK
                     QARSRLQAKFGGQEFLIGLDPALLLGHTAVVSVSLIFIPLTILIAVCVPGNQVLPFGD
                     LATIGFFVAMAVAVHRGNLFRTLISGVIIMSITLWIATQTIGLHTQLAANAGALKAGG
                     MVASMDQGGSPITWLLIQVFSPQNIPGFIIIGAIYLTGIFITWRRARGFIKQEKAVLA
                     E"
     gene            complement(89646..89930)
                     /gene="gatB"
                     /locus_tag="JN078_000082"
     CDS             complement(89646..89930)
                     /gene="gatB"
                     /locus_tag="JN078_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIB"
                     /protein_id="HAY9039413.1"
                     /translation="MKRKIIVACGGAVATSTMAAEEIKELCQNHNIPVELIQCRVNEI
                     ETYMDGVHLICTTARVDRSFGDIPLVHGMPFVSGVGIEALQNKILTILQG"
     gene            complement(89961..90413)
                     /gene="gatA"
                     /locus_tag="JN078_000083"
     CDS             complement(89961..90413)
                     /gene="gatA"
                     /locus_tag="JN078_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIA"
                     /protein_id="HAY9039414.1"
                     /translation="MTNLFVRSGISFVDRSEVLTHIGNEMLAKGVVHDTWPQALIARE
                     AEFPTGIMLEQHAIAIPHCEAIHAKSSAIYLLRPTNKVHFQQADDDNDVEVSLVIALI
                     VENPQQQLKLLRCLFGKLQQPDIVETLITLPETQLKEYFTKYVLDSDE"
     gene            complement(90483..91685)
                     /gene="gatZ"
                     /locus_tag="JN078_000084"
     CDS             complement(90483..91685)
                     /gene="gatZ"
                     /locus_tag="JN078_000084"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase subunit GatZ"
                     /protein_id="HAY9039415.1"
                     /translation="MKTLIARHKAGEHIGICSVCSAHPLVIEAALAFDRNSTRKVLIE
                     ATSNQVNQFGGYTGMTPADFREFVFTIADKVGFARERIILGGDHLGPNCWQQENADAA
                     MEKSVELVKEYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAESVATDCQ
                     REQLSYVIGTEVPVPGGEASAIQSVHITHVEDAANTLRTHQKAFIVRGLTEALTRVIA
                     IVVQPGVEFDHSNIIHYQPQEAQPLAQWIENTRMVYEAHSTDYQTRTAYWELVRDHFA
                     ILKVGPALTFALREAIFALAQIEQELIAPENRSGCLAVIEEVMLDEPQYWKKYYRTGF
                     NDSLLDIRYSLSDRIRYYWPHSRIKNSVETMMVNLEGVDIPLGMISQYLPKQFERIQS
                     GELSAIPH"
     gene            complement(91714..92568)
                     /gene="gatY"
                     /locus_tag="JN078_000085"
     CDS             complement(91714..92568)
                     /gene="gatY"
                     /locus_tag="JN078_000085"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416599.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase subunit GatY"
                     /protein_id="HAY9039416.1"
                     /translation="MHVVSTKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAANLHAP
                     VIIAGTPGTFTHAGTENLLALVSAMAKQYHHPLAIHLDHHTKFDDIAQKVRSGVRSVM
                     IDASHLPFAQNISRVKEVVDFCHRFDVSVEAELGQLGGQEDDVQVNEADAFYTNPAQA
                     REFAEATGIDSLAVAIGTAHGMYASAPALDFSRLENIRQWVNLPLVLHGASGLSTKDI
                     QQTIKLGICKINVATELKNAFSQALKNYLTEHPEATEPRDYLQSAKSAMRDVVSKVIA
                     DCGCEGRA"
     gene            complement(92876..93928)
                     /gene="fbaB"
                     /locus_tag="JN078_000086"
     CDS             complement(92876..93928)
                     /gene="fbaB"
                     /locus_tag="JN078_000086"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006820796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I fructose-bisphosphate aldolase"
                     /protein_id="HAY9039417.1"
                     /translation="MTDIAQLLGKDADNLLQHRCMTIPSDQLYLPGHDYVDRVMIDNN
                     RPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAI
                     EAGCNCVVSTYGVLASVSRRYAHRIPFLVKLNHNETLSYPNTYDQTLYASVEQAFNMG
                     AVAVGATIYFGSEESRRQIEEISAAFERAHELGMVTVLWAYLRNSAFKKDGVDYHVSA
                     DLTGQANHLAATIGADIVKQKMAENNGGYKAINYGYTDDRVYSKLTSENPIDLVRYQL
                     ANCYMGRAGLINSGGAAGGETDLSDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKL
                     INAVQDVYLDSKITIA"
     gene            94185..95462
                     /locus_tag="JN078_000087"
     CDS             94185..95462
                     /locus_tag="JN078_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9039418.1"
                     /translation="MKTTAKLSFMMFVEWFIWGAWFVPLWLWLSKSGFSAGEIGWSYA
                     CTAIAAILSPILVGSITDRFFSAQKVLAVLMFAGALLMYFAAQQTTFAGFFPLLLAYS
                     LTYMPTIALTNSIAFANVPDVERDFPRIRVMSTIGWIASGLACGFLPQILGYADISPT
                     NIPLLITAGSSALLGVFAFFLPDTPPKSTGKMDIKVMLGLDALILLRDKNFLVFFFCS
                     FLFAMPLAFYYIFANGYLTEVGMKNATGWMTLGQFSEIFFMLALPFFTKRFGIKKVLL
                     LGLVTAAIRYGFFIYGSADEYFTYALLFLGILLHGVSYDFYYVTAYIYVDKKAPVHMR
                     TAAQGLITLCCQGFGSLLGYRLGGVMMEKMFAYQEPVNGLTFNWSGMWTFGAVMIAII
                     AVLFMIFFRESDNEITAIKVDDRDIALTQGEVK"
     gene            95459..96463
                     /locus_tag="JN078_000088"
     CDS             95459..96463
                     /locus_tag="JN078_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribosylglycohydrolase family protein"
                     /protein_id="HAY9039419.1"
                     /translation="MKTERILGALYGQALGDAMGMPSELWPRSRVKAHFGWIDRFLPG
                     PKENNAACYFNRAEFTDDTSMALCLADALLEREGKIDPDLIGRNILDWALRFDAFNKN
                     VLGPTSKIALNAIRDGKPVAELENNGVTNGAAMRVSPLGCLLPARDVDSFIDDVALAS
                     SPTHKSDLAVAGAVVIAWAISRAIDGESWSAIVDSLPSIARHAQQKRTTTFSASLAAR
                     LEIALKIVRNADGTESASEQLYQVVGAGTSTIESVPCAIALVELAQTDPNRCAVLCAN
                     LGGDTDTIGAMATAICGALHGVNAIDPALKAELDAVNQLDFNRYATALAKYRQQREAV
                     "
     gene            96460..97425
                     /locus_tag="JN078_000089"
     CDS             96460..97425
                     /locus_tag="JN078_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HAY9039420.1"
                     /translation="MSGARLHTLLPELTTRQPVMVVGAAVIDVIADAYALPWRGCDIE
                     LKQQSVNVGGCALNIAVALKRLGIEAGNALPLGQGVWAEIIRNRMAKEGLISLIDNAE
                     GDNGWCLALVEPDGERTFMSFSGVENQWNRQWLARLTVAPGSLLYFSGYQLASPCGEL
                     LVEWLEELQDVTPFIDFGPRIGDIPDALLARIMACRPLVSLNRQEAEIAAERFALSAE
                     ITTLGKQWQEKFAAPLIVRLDKEGAWYFSNDASGCIPAFPTQVVDTIGAGDSHAGGVL
                     AGLASGLPLADAVLLGNAVASWVVGHRGGDCAPTREELLLAHKNV"
     gene            complement(97399..98145)
                     /locus_tag="JN078_000090"
     CDS             complement(97399..98145)
                     /locus_tag="JN078_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAY9039421.1"
                     /translation="MEQAHTQLIAQLNERILAADNTPLYIKFAETVKNAVRSGVLEHG
                     NILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFS
                     QQVVLRGKKPDTLWVNKRVVKCPEEVAQQLAVEAGSDVFLLKRIRYVDEEAVSIEESW
                     VPAHLIHDVDAIGISLYDYFCSQHIYPQRTRSRVSARMPDAEFQSHIQLDSKIPVLVI
                     KQVALDQQQRPIEYSISHCRSDLYVFVCEE"
     gene            complement(98197..99015)
                     /locus_tag="JN078_000091"
     CDS             complement(98197..99015)
                     /locus_tag="JN078_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416605.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase 25 family protein"
                     /protein_id="HAY9039422.1"
                     /translation="MQLRITSRKKLTSLLCALGLISIVAIYPRQTVNFFYSTAVQITD
                     YIHFYGYRPVKSFAIRIPASYTIHGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKAT
                     EGEKLVDPYFSRNWQLSRENGLLRGAYHYFSPSVAAPVQVRLFLQTVDFSQGDFPAVL
                     DVEERGKLSAKELRKRVSQWLKMVEKSTGKKPIIYSGAVFYHTNLAGYFNEYPWWVAH
                     YYQRRPDNDGMAWRFWQHSDRGQVDGINGPVDFNVFNGTVEELQAFVDGIKETP"
     gene            complement(99080..99880)
                     /gene="thiD"
                     /locus_tag="JN078_000092"
     CDS             complement(99080..99880)
                     /gene="thiD"
                     /locus_tag="JN078_000092"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HAY9039423.1"
                     /translation="MKRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQ
                     NTRGVQSVYRIEPDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRYQIQNV
                     VLDTVMLAKSGDPLLSPSAVATLRSRLLPQVSLITPNLPEAAALLDAPHARTEQEMLE
                     QGRSLLAMGCGAVLMKGGHLDDEQSPDWLFTREGEQRFTAPRIMTKNTHGTGCTLSAA
                     LAALRPRHTNWADTVQEAKSWLSSALAQADTLEVGHGIGPVHHFHAWW"
     gene            complement(99877..100665)
                     /gene="thiM"
                     /locus_tag="JN078_000093"
     CDS             complement(99877..100665)
                     /gene="thiM"
                     /locus_tag="JN078_000093"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HAY9039424.1"
                     /translation="MQVDLLGSAQSAHALHLFHQHSPLVHCMTNDVVQTFTANTLLAL
                     GASPAMVIETEEASQFAAIASALLINVGTLTQPRAQAMRAAVEQAKSSQTPWTLDPVA
                     VGALDYRRHFCHELLSFKPAAIRGNASEIMALAGIANGGRGVDTTDAAANAIPAAQTL
                     ARETGAIVVVTGEMDYVTDGHRIIGIHGGDPLMTKVVGTGCALSAVVAACCALPGDTL
                     ENVASACHWMKQAGERAVARSEGPGSFVPHFLDALWQLTQEVQA"
     regulatory      complement(100700..100796)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(100888..101160)
                     /gene="rcnR"
                     /locus_tag="JN078_000094"
     CDS             complement(100888..101160)
                     /gene="rcnR"
                     /locus_tag="JN078_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni(II)/Co(II)-binding transcriptional repressor
                     RcnR"
                     /protein_id="HAY9039425.1"
                     /translation="MSHTIRDKQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAA
                     IRGAVNGLMREVIKGHLTEHIVHQGDELKREEDLDVVLKVLDSYIK"
     gene            101281..102105
                     /locus_tag="JN078_000095"
     CDS             101281..102105
                     /locus_tag="JN078_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel/cobalt efflux protein RcnA"
                     /protein_id="HAY9039426.1"
                     /translation="MTEFTTLLQQGNAWFFIPSAILLGALHGLEPGHSKTMMAAFIIA
                     IKGTIKQAVMLGLAATISHTAVVWLIAFGGMVISKRFTAQSAEPWLQLISAVIIISTA
                     FWMFWRTWRGERNWLENMHGHDYEHHHHDHEHHHDHGHHHHHEHGEYQDAHARAHAND
                     IKRRFDGREVTNWQILLFGLTGGLIPCPAAITVLLICIQLKALTLGATLVVSFSIGLA
                     LTLVTVGVGAAISVQQVAKRWSGFNTLAKRAPYFSSLLIGLVGVYMGVHGFMGIMR"
     gene            102324..102662
                     /gene="rcnB"
                     /locus_tag="JN078_000096"
     CDS             102324..102662
                     /gene="rcnB"
                     /locus_tag="JN078_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni(II)/Co(II) efflux transporter accessory
                     subunit RcnB"
                     /protein_id="HAY9039427.1"
                     /translation="MTIKNKMLLGALLLVTSAAWAAPATAGSTNTSGISKYELSSFIA
                     DFKHFKPGDTVPEMYRTDEYNIKQWQLRNLPAPDAGTHWTYMGGAYVLISDTDGKIIK
                     AYDGEIFYHR"
     gene            complement(102744..103778)
                     /locus_tag="JN078_000097"
     CDS             complement(102744..103778)
                     /locus_tag="JN078_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative fimbrial-like adhesin protein"
                     /protein_id="HAY9039428.1"
                     /translation="MEIRIMLFILMMMVMPVSYAACYSELSVQHNLVVQGDFALTQTQ
                     MATYEHNFNDSSCVSTNTITPMSPSDIIVGLYNDTIKLNLHFEWTNKNNITLSNNQTS
                     FTNGYSVTVTPAASNAKVNVSAGGGGSVMINGVATLSSASSSTRGSAAVQFLLCLLGG
                     KSWDACVNSYRNALAQNAGVYSFNLTLSYNPITTTCKPDDLLITLEGIPVSQLPATGN
                     KATINSKKGDIILRCKNLLGQQNQTSRKMQVYLSSSDLLTNSNTILKGAEDNGVGFIL
                     ESNGSPVTLLNITDNSKGYTNLKEIAAKSKLTDTTVSIPITASYYVYDTNKVKSGALE
                     ATALINVKYD"
     gene            complement(103794..106274)
                     /locus_tag="JN078_000098"
     CDS             complement(103794..106274)
                     /locus_tag="JN078_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
                     /protein_id="HAY9039429.1"
                     /translation="MLRMTPLASAIVALLLGIEAYAAEETFDTHFMIGGMKDQQVANI
                     RLDDNQPLPGQYDIDIYVNKQWRGKYEIIVKDNPQETCLSREVIKRLGINSDNFASGK
                     QCLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENWERGINAFYTSYYL
                     SQYYSDYKASGNNKSTYVRFNSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGF
                     AQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVT
                     IEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQ
                     PGVSKYDFAAGRSHIEGASKQSEFVQVGYQYGFNNLLTLYGGSMVANNYYAFTLGTGW
                     NTRIGAISVDATKSHSKQDNGDVFDGQSYQIAYNKFVSQTSTRFGLAAWRYSSRDYRT
                     FNDHVWANNKDNYRRDENDVYDIADYYQNDFGRKNSFSANMSQSLPEGWGSVSLSTLW
                     RDYWGRSGSSKDYQLSYSNNWRRISYTLAASQAYDENHHEEKRFNIFISIPFDWGDDV
                     TTPRRQIYMSNSTTFDDQGFASNNTGLSGTVGSRDQFNYGVNLSHQHQGNETTAGANL
                     TWNAPVATVNGSYSQSSTYRQAGASVSGGIVAWSGGVNLANRLSETFAVMNAPGIKDA
                     YVNGQKYRTTNRNGVVIYDGMTPYRENHLMLDVSQSDSEAELRGNRKIAAPYRGAVVL
                     VNFDTDQRKPWFIKALRADGQPLMFGYEVNDIHGHNIGVVGQGSQLFIRTNEVPPSVN
                     VAIDKQQGLSCTITFGKEIDESRNYICQ"
     gene            complement(106290..106964)
                     /locus_tag="JN078_000099"
     CDS             complement(106290..106964)
                     /locus_tag="JN078_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
                     /protein_id="HAY9039430.1"
                     /translation="MKGLLSLLIFSMVLPAHAGIVIYGTRIIYPAENKEVMVQLMNQG
                     NRSSLLQAWIDDGDTSLPPEKIQVPFMLTPPVAKIGANSGQQVKIKIMPNKLPTNKES
                     IFYLNVLDIPPNSPEQEGKNALKFAMQNRIKLFYRPAGIAPVNKATFKKLLVNRSGNG
                     LVIKNDSANWVTISDVKANNVKVNYETIMIAPLESQSVNVKSNNANNWHLTIIDDHGN
                     YISDKI"
     gene            complement(107044..107586)
                     /locus_tag="JN078_000100"
     CDS             complement(107044..107586)
                     /locus_tag="JN078_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY9039431.1"
                     /translation="MKRSIIAAAVFSSFFMSAGVFAADVDTGTLTIKGNIAESPCKFE
                     AGGDSVSINMPTVPTSVFEGKAKYSTYDDAVGVTSSMLKISCPKEVAGVKLSLITNDK
                     ITGNDKAIASSNDTVGYYLYLGDNSDVLDVSAPFNIESYKTAEGQYAIPFKAKYLKLT
                     DNSVQSGDVLSSLVMRVAQD"
BASE COUNT        27252 a        27386 c        25448 g        27539 t
ORIGIN      
        1 cagtgacaaa gggatgccag cgtttttcaa acagaatatg agcgatcccg gttcggcgcg
       61 gcggtaaggt cgcgactttg agttttggct tcttcaactc tttcatcacc acccagagcg
      121 ttatcaccag caaaacggca accaacggcc acacagacaa attaaaagtc tcagcaatag
      181 agttatgttc agtactgtag tgctgcaagg tttgatttaa accactggca tgtggagaac
      241 gcatcaccgc actcatcacc atataagtga aaagcgcgat ccaactgccg atcaatccct
      301 cacccgcgcg ataccaggtc ccggtggcac atccacccgc cagaacaatt cccagcccga
      361 agatataccc acctataaca gtaccaggcc acgggaacgc cccggcttcg taagtcagta
      421 ggcccgccta aattaacgca aaaaccccca cactttgtac cgaaattgca atcagcaagg
      481 cgtaaaacat gcgattattt ttcgcgatat acatatcgcg aaaaccacca gtcaggcaaa
      541 aacgcccacg ctgcatgaca aatcccagca gagcaccaca aattagcccg cttaatatca
      601 ttgaaaacat aaattaatta accagatgaa tgttaatgag gaaattattc atgactggtg
      661 gaatgcagac caataaccaa attctctaaa ttagaacaaa tggttcttaa tgaggatttc
      721 gataaaaaag aataaaaaaa ccggagccaa atattcattc gactccggtt gattattaga
      781 aaagatgatt atgctacgtc ttcgtactgc ggaaccgggt tacggaagct cttggtgacg
      841 caagccaggt aaatcagacc gatagcagcc cagatcagac ccagaaccat tgagctttct
      901 tccaggttaa cccacagcgc accaacggtc agcgcaccac acatcggcag gaacagatac
      961 tggaagtgat ctttcagcgt cttattacgc ttctcacgga tccagaactg cgagatgacc
     1021 gacaggttaa cgaaggtgaa cgccaccagc gcaccaaagt taatcagcgc cgttgccatt
     1081 accaggtcga agttgattgc cagcagggca atcgcgccaa ccaggatgat gttcatcgcc
     1141 ggagtacgcc atttcgggtg tacataaccg aagaagcttt tcgggaatac gccgtcacga
     1201 cccattacgt acatcagacg cgctacgcct gcatgcgccg ccataccgga cgccagtacg
     1261 gtaatggtgg agaagatcag cgcgccaacc tggaacgctt tacccgcaac gtacagcatg
     1321 atttcaggct gtgacgcatc cggatcttta aagcgagaga tatccgggaa gtacagctgc
     1381 aggaagtaag ttgcaaagat gaagatcatg ccgccgatca gcgcggtcag gaaaatcgca
     1441 cgcgggatca cgcgctctgc atctttggtt tcttccgaca ggttgctgat gccgtcaaag
     1501 ccggtaaagg agaagcacag gattgtcgcc ccggtaatca tcgggataac atgcgcatcg
     1561 ccagaccaga atggacgagt gctcgccagc gtaccagcgc cttcaccttc aaatacgcca
     1621 taaacaacca tgcccagaat caccgcgatc agcaccacct gcaacacgac gattacagtg
     1681 ttgaagttcg ctacggattt cagactacgc aggttaaagg cggtcatgaa ggccaccaac
     1741 gccaccacaa acatccacga tgggatggaa ggcaccagag cttcaaaata gattttcgcc
     1801 agcagaatgt tgatcatcgg cgcgaacaga tagtcgagca gagaagacca acccaccata
     1861 aagccgacag tcgggctaat ggatttctgg gcgtaagtgt atgcagagcc agcagaagga
     1921 tagcggcgaa ccagcttccc gtagctcaga gccgtaaaca ggatcgcaat caatgcgaac
     1981 gcataggctg tcggcacatg accatccgtg aggcctgaaa cgataccaaa agtatcaaac
     2041 agcgtcatcg gctgcatata ggcaagaccc atcattacaa ccggaactaa cgtaagcgtt
     2101 ttacgcaatt ccacgcgaga ggtgtttgga gtaacgttat gcgacatggt cattctcctt
     2161 tacggtgata accgtcgcgt aagcaaaaaa ttgccccatt tttttggatt cctcagcgac
     2221 aacaactgtc gatttttagt aaatatctat ccggtacgaa gcccggcctc ttggtatgaa
     2281 tgattggttt gaagcaaaaa ataaccgacg ctgatgaaac gtcggttttt agtcattttt
     2341 tgacagcggc gcattgtgcc taaatggggg ggaaatgaca agagaatgag aggcttgtca
     2401 taataatttt tctttaaatg gctgattttc cgtcatcaga ttttgcataa acaccggcga
     2461 tcgcactatt tgctaaaatt tcatcccgcc accagccact ggcaagtcct gcggtctgtt
     2521 cattccagcc aatccagacg ggttcaaaga gagtttgggc gaccactttc ttctcgatta
     2581 acgcgccact atcgagaaaa tgttgcgcca gataacgggg taaatagccg cagccgaggc
     2641 cgctaatttg cagctccagc ttggttttaa aatcgaaaac ggtaatggct tcttgttcgt
     2701 cgagaagttg tgaggccgta gaagcgcctg cctgcgcagt atcccccacc acaatcgccc
     2761 gatatcgctt aataatacga cgatttaacg gctcttcttc cagggctaac ggatgatgag
     2821 gcgcgaccgc aaagacttgt tccagatcgc ccaaccgtga aaaaccaaac tcactggaag
     2881 atggtggctc atgcatcgcg ccaacaataa tatccgctcg cccctgagtc agggcatccc
     2941 atgaaccacc cagtacgcca ttgataaact tcaggcgcgt cacgctatga tgttgataaa
     3001 aagcttcaat cagtggcgct agcagagaaa aaggaaacgt gtcgtccacg ccaatcacca
     3061 gctcgttttc ccagccttca tgcagtttga tcgcctgctt ttccagttcc cgcacggtat
     3121 gcagaacttc ccgccctttc tctaataaca tttttccggt gcgggtgaat ttagcgcggt
     3181 gaccgctacg atcaagcaat tgaatattaa ggtcgctttc cagcttgtga acggtgtaac
     3241 tcagagcgga cggcgtcttg tagagtttgg ccgacgccgc cgcaaaactg ccttcttttt
     3301 ctaaggcatc gaggatcatc aacacatcca gcagtggttt catacacgcc cccttgcagt
     3361 gtatgcggcg tcctgctggc gtgatcgttt actccagcgg cattaccagc ggatcgggat
     3421 actggtattc aaatcccagt tcattacaaa tccgactgcc atcaataatc ttacctttgc
     3481 cgctgtccag actatttctg aactgcggag gttccagccc cagtaaacgg gccatctgcg
     3541 gatagaaaac attacgcgca gggtgagctg gcgcacatat attatagatg tgtccgcctt
     3601 taggtgcctg taacaacaga gtgatagcgc caataacatc ttctaaatgg actaaattaa
     3661 caccatgttc accatcaggc gcggtttttc cggcaaagaa gcgtccggga tgacgccccg
     3721 gtccgaccag gcccgcaaga cgcagaatat cgaccgaagt accgggtaaa ttgtgcagcc
     3781 agtcttcgag ttcttctaat actcgtccac tgttggttac cggattacgc ggggtagttt
     3841 ctttcaccat gccttgcgca tcgccataga cagatgttga gctggtaaaa ataattcggg
     3901 gaatacgatg ggccagcgcg ctatccacta actcttgtac cgcttgtaaa tagaactcat
     3961 cgccggagcc gctacgacgt gccggaagcg taatgaccag tgcatcggca tccatcaggg
     4021 catccagatc gtcagaatcg caaactaact caggctccat gcgaagcaga tagctatcaa
     4081 tgccactcat tcgggccgct tcgacaccat cttgtgtggt tttactcccg gtgacttgcc
     4141 agcctcgcgc tgaaagtgac atcgccagcg gcatgcctaa ccaccctaac ccgacaattg
     4201 cgaccttttt catccgttat ctcctgatac accttagatc tataaggcta cgctagcgta
     4261 tcaaaactga caattcattc tatgaatgaa tctgttcaat aatgataacg acatgctgca
     4321 atgagcagtg aatcgtcggt aaccgcgtat accagacggt gctcctctgt aatgcgtcgg
     4381 gactagaaac ctgacaaatt atgtttcagg ggttctggct tccccttacc ttcaaatggc
     4441 gttctgcggg tatctttgat aagttcattg atctttttaa caattcgctt atctgtttcc
     4501 tgccagtaca gataatcatc ccatgattcc tcagaccaga ttagtttcac tcaataatgt
     4561 ccttttctgt tcctttgcct gatttcaggc tatcgattga gtccatcaat ctccgggcgt
     4621 tagcggggga acgcagtaga taagccgtct cttccagcga gttgtattct tcgagtgaca
     4681 tcagaacaca agcctcccca ttctgacgag taataaggat cggggcatga tcttcaacgg
     4741 ctttcatcat tgttgccgac aaattctgac gcgcttcgct gtagctaatt gtacgcatgt
     4801 caatctcctc ttttgtacag ttcattgtac aatgatgggc gttaattaac tatttattaa
     4861 ttagtttgta gatcaaggta ttgtcagtga gacgaaaatc caggcttcgc tatttttggt
     4921 gccgtcagct tagaggacag tcctcttagc cccctccttt ccccgctcat tcattaaaca
     4981 aatccatcgc catagaatat ataaaaaagc ccttgctttc taacgtgaaa gtggtttagg
     5041 ttaaaagaca tcagttgaat aaacattcac agagactttt atgacacgcg ttcaatttaa
     5101 acaccaccat catcaccatc atcctgacta gtctttcagg cgatgtgtgc tggaagacat
     5161 tcagatcttc cagtggtgca tgaacgcatg agaaagcccc cggaagatca ccttccgggg
     5221 gcttttttat tgcgcggttg ataacggttc agacaggttt aaagaggaat aagaaaatga
     5281 cagacaacac tcgtttacgc atagctatgc agaaatccgg ccgtttaagt gatgactcac
     5341 gcgaattgct ggcgcgctgt ggcattaaaa tcaatcttca cacccagcgc ctgatcgcga
     5401 tggcagaaaa catgccgatt gatattctgc gcgtgcgtga cgacgacatt cccggtctgg
     5461 taatggacgg cgtggttgac ctcgggatta tcggcgaaaa cgtgctggaa gaagagctgc
     5521 ttaaccgccg cgcccagggt gaagatccac gctactttac cctgcgtcgt ctggatttcg
     5581 gcggctgccg actttcactg gcaacgccgg ttgatgaagc ctgggatggc ccgctctcct
     5641 taaacggtaa acgtatcgcc acctcttatc ctcacctgct caagcgttat ctcgaccaga
     5701 aaggtatctc ttttaaatcc tgcttactga acggttctgt tgaagtcgcc ccgcgtgccg
     5761 gactggcgga tgcgatttgc gatctggttt ccaccggtgc cacgctggaa gctaacggcc
     5821 tgcgcgaagt cgaagttatc tatcgctcga aagcctgcct gatacaacgc gatggcgaaa
     5881 tggaagaatc caaacagcaa ctgatcgaca aactgctgac ccgtattcag ggtgttatcc
     5941 aggcgcgtga atcaaaatac atcatgatgc acgcaccgac cgaacgtctg gatgaagtca
     6001 tcgccctgct gccaggtgcc gaacgcccaa ctattctacc gctggcgggt gatcaacagc
     6061 gcgtagcgat gcacatggtc agtagcgaaa ccctgttctg ggaaacgatg gaaaaactga
     6121 aagcgctggg tgccagttca atcctggtcc tgccgattga gaagatgatg gagtgatcgc
     6181 catgagcttt aacacaatca ttgactggaa tagctgtact gcggagcaac aacgccagct
     6241 gttaatgcgc ccggcgatct ccgcttctga aagcattacc cgcactgtta acgatattct
     6301 cgataacgtg aaagcacgcg gcgatgaggc cctgcgggaa tacagcgcga agtttgataa
     6361 aaccacggtt accgcactga aggtgtctgc tgaggaaatt gccgccgcta gcgaacgcct
     6421 gagcgacgag ctaaaacagg cgatggcggt ggcagtgaag aatattgaaa ccttccacac
     6481 tgcgcaaaaa ctgccgccgg tagatgtaga aacgcagcca ggcgtgcgtt gccagcaggt
     6541 cacgcgcccg gtcgcttcag ttgggttgta tattcctggc ggctccgccc cgctcttctc
     6601 aacggtatta atgctggcga ctccggcgcg tattgcgggc tgtaaaaaag tggtgctgtg
     6661 ctcaccgccg ccgattgccg atgagatcct ttatgcggcg cagctgtgcg gtgtgcagga
     6721 cgtgtttaac gtcggcggcg cacaggccat tgccgcactg gcgtttggta cggaatctgt
     6781 gccgaaagtg gacaaaatct tcgggccggg caacgccttt gtcaccgaag cgaaacgtca
     6841 ggtgagccag cgtctggacg gtgcggcgat cgatatgccc gcaggcccgt cggaagtgtt
     6901 ggtcattgcc gacagtggcg caacgccgga tttcgtggct tctgatttgc tttctcaggc
     6961 tgaacacggc ccggactcac aggtgatttt actgacgccc gctgctgata tggcgcgtcg
     7021 cgttgccgag gctgtcgaac gccagctggc agaactgccg cgtgctgaaa ccgcccgtca
     7081 ggcactgaac gccagccgcc tgatcgtgac taaagattta gcgcagtgcg tagagatctc
     7141 caaccagtac ggcccggagc acctgatcat ccagacccgc aacgcccgcg atctggtcga
     7201 tggcattacc agtgccggtt cggtatttct tggtgactgg tcactggaat cggcaggtga
     7261 ttacgcctcc ggcaccaacc acgttctgcc gacttacggt tacaccgcca cctgttccag
     7321 cctcgggctg gcagatttcc agaagcgcat gaccgtgcag gaactgtcga aagaaggttt
     7381 ctccgcgctg gcttcgacca ttgaaacatt ggccgccgcc gagcgcctga ccgcccataa
     7441 aaatgccgtt actttacgtg ttaacgccct taaggagcaa gcatgagcat cgtgactatt
     7501 accgatttag cgcgtgaaaa cgtgcgcaac ctgacgccgt atcagtcggc gcgtcgtctg
     7561 ggcggtaacg gcgatgtctg gctgaacgcc aacgaatatc ccacagccgt ggaatttcag
     7621 cttactcagc aaacgctcaa ccgctacccg gaatgtcagc cgaaagcggt gattgaaaat
     7681 tacgcgcaat atgcaggcgt aaaaccggaa caggtgctgg tcagccgtgg cgcggacgaa
     7741 ggtattgaac tactgattcg cgctttttgc gaaccgggta aagacgccat cctctactgc
     7801 ccgccaacgt acggcatgta cggcgtcagc gccgaaacca ttggcgtcga gtgccgcaca
     7861 gtgccgacgc tggacaactg gcaactggat ttacagggca tttccgacaa gctggaaggc
     7921 gtaaaagtgg tctatgtttg cagccccaac aacccgaccg ggcaactgat caatccgcag
     7981 gattttcgca ctctgctgga gttaacccgc ggtaaagcga ttgtggttgc cgatgaagcc
     8041 tatatcgagt tttgcccgca ggcatcgctg gctggctggc tggcggaata tccgcacctg
     8101 gctattttgc gcacactgtc gaaagctttt gctctggcgg gccttcgttg cggatttacg
     8161 ctggcaaacg aagaagtcat caacctgctg atgaaagtga ttgcccccta cccgctctcg
     8221 acgccggttg ccgacattgc ggcccaggcg ttaagcccgc aggggatcgt cgccatgcgt
     8281 gagcgggtgg cgcaaattat tgcagaacgc gaatgcctga ttgccgcact gaaagagatc
     8341 ccctgcgtgg agcaggtttt cgactctgaa accaactaca ttctggcgcg ctttaaagcc
     8401 tccagtgcag tgtttaaatc tttgtgggat cagggcatta tcttacgtga tcagaataaa
     8461 cacccctctt taagcggctg cctgcgaatt accgtcggaa cccgtgaaga aagccagcgc
     8521 gtcattgacg ccttacgtgc ggagcaagtt tgatgagtca gaagtatctt tttatcgatc
     8581 gcgatggaac cctgattagc gaaccgccga gtgattttca ggtggaccgt tttgataaac
     8641 tcgcctttga accgggcgtg atcccggagc tgctgaagct gcaaaaagcg ggctacaagc
     8701 tggtgatgat cactaatcag gatggtctgg gaacacaaag tttcctgcag gcggattttg
     8761 atggcccgca caacctgatg atgcagatct tcacctcgca aggcgtgcag tttgatgaag
     8821 tgctgatttg tccgcacctg cccgccgatg agtgcgactg ccgtaagccg aaagtaaaac
     8881 tggtggaacg ttatctggct gagcaagcga tggatcgcgc taacagttat gtgattggcg
     8941 atcgcgcgac cgacattcaa ctggcggaaa acatgggtat taatggttta cgctacgacc
     9001 gcgaaaccct gaactggccg atgattggcg agcaactcac taaacgagac cgttacgccc
     9061 atgtagtgcg caacaccaaa gagacgcaaa ttgacgtcca ggtgtggctg gatcgcgaag
     9121 gtggcagcaa gattaacacc ggcgttggct tctttgatca catgctggat cagatcgcca
     9181 cccacggcgg tttccgtatg gaaatcaacg tcaaaggcga cctctatatc gacgatcacc
     9241 acaccgtcga agataccggc ctggcgctgg gtgaagcgtt aaaaattgcc cttggcgaca
     9301 aacgcggtat ttgccgcttt ggttttgtgc taccgatgga cgaatgcctt gcccgctgtg
     9361 cactggatat ctctggtcgc ccgcacctgg aatataaagc cgaatttacc taccagcgcg
     9421 tcggcgatct cagcaccgag atgatcgagc acttcttccg ttcgctgtct tacaccatgg
     9481 gcgtgacgct acacctgaaa accaaaggta aaaacgatca ccaccgtgta gagagcctgt
     9541 tcaaagcctt tggtcgcacc ctgcgccagg ccatccgcgt ggaaggcgac accctgccct
     9601 cgtcgaaagg agtgctgtga tgaacgtggt gatcctggat accggctgcg ccaacctgaa
     9661 ctcggtgaag tctgccattg cgcgccacgg ttatgaaccc aaagtcagcc gtgacccgga
     9721 cgtcgtgttg ctggccgata aactattttt acccggcgta ggcaccgcac aagcagcgat
     9781 ggatcaggtg cgtgagcgcg aactgtttga tctcatcaaa gcctgtaccc aaccggtgct
     9841 gggcatctgc ttagggatgc aactgcttgg gcggcgcagc gaagagagca acggcgtcga
     9901 cttgctgggc atcatcgacg aagacgtgcc gaaaatgacc gactttggtc tgcccctgcc
     9961 gcatatgggc tggaaccgcg tttacccgca ggcaggcaac cgcctgtttc aggggattga
    10021 agatggcgcg tacttttact ttgttcacag ctacgcaatg ccagtcaatc cgtggaccat
    10081 cgcccagtgt aattacggcg aaccgttcac cgcggcggta caaaaagata acttctacgg
    10141 cgtgcagttt cacccggagc gttctggtgc cgctggcgct aagttgctga aaaacttcct
    10201 ggagatgtga tgattattcc ggcattagat ttaatcgacg gcaccgtggt gcgtctccat
    10261 cagggcgatt acggcaaaca gcgcgattac ggtaacgacc cgctgccgcg cttacaggat
    10321 tacgcagcgc agggtgccga agtgctgcat ctggtggatc tgaccggagc aaaagatccg
    10381 gcaaaacgtc aaatcccgct gattaaaacc ctggtcgcgg gcgttaacgt tcctgtgcag
    10441 gttggcggcg gcgtgcgtag cgaagaagac gtggcggcgt tactggaagc gggcgttgcg
    10501 cgcgtggtgg ttggctccac cgcggtgaaa tcaccagaaa tggtgaaagg ctggtttgaa
    10561 cgtttcggtg ccgatgcctt agtactggcg ctggatgtcc gtattgacga gcaaggtaac
    10621 aagcaggtgg cggtgagcgg ctggcaagag aactcgggcg tttcactgga acaactggtg
    10681 gaaacctatc tgcccgtcgg cctgaaacat gtgctttgta ccgatatctc gcgcgacggc
    10741 acgctggcag gttctaacgt ctctttatat gaagaagtgt gcgccagata tccgcaggtg
    10801 gcatttcagt cctccggcgg cattggcgac attaacgatg ttgctgctct acgtggtact
    10861 ggcgtgcgcg gcgtaatagt tggtcgtgca ttactggaag gtaaattcac cgtgaaggag
    10921 gccatcgcat gctggcaaaa cgcataattc cgtgtctcga cgttcgtgat ggtcaggtgg
    10981 tgaaaggcgt acagtttcgc aaccatgaaa tcattggcga tatcgtgcca ctggcaaaac
    11041 gctacgccga agaaggtgca gatgaactgg tgttctacga tatcaccgct tccagcgatg
    11101 gccgtgtggt agataaaagc tgggtatctc gcgtggcgga agtgatcgac attccgtttt
    11161 gtgtggcggg tgggattaag tctctggaag atgccgcgaa aattctttcc tttggcgcgg
    11221 ataaaatttc cataaactcg cctgcgctgg cggacccgac gttaattact cgcctggccg
    11281 atcgctttgg cgtgcagtgt attgtagtcg gtattgatac ctggtacgac ggcgaaaccg
    11341 gtaaatatca tgtgaatcaa tataccggcg atgaaagccg cacccgcgtc actcagtggg
    11401 aaacactcga ctgggtacag gaagtgcaaa aacgcggtgc cggagaaatc gtcctcaaca
    11461 tgatgaatca ggacggcgtg cgtaacggtt acgacctcga acaactgaaa aaagtgcgtg
    11521 aagtttgcca cgtcccgcta attgcctccg gtggcgcggg caccatggaa cacttcctcg
    11581 aagccttccg cgatgccgac gttgacggcg cgctggctgc ttccgtattc cacaaacaaa
    11641 taatcaatat tggtgaatta aaagcgtacc tggcaacaca gggcgtggag atcaggatat
    11701 gttaacagaa caacaacgtc gcgaactgga ctgggaaaaa accgacggac ttatgccggt
    11761 gattgtgcag cacgcggtat ccggtgaagt gttaatgctg ggctatatga acccggaagc
    11821 cttagacaaa accatcgaaa gcggcaaagt caccttcttc tcgcgcacta aacagcgact
    11881 gtggaccaaa ggcgaaacgt cgggcaattt cctcaacgta gtaaatattg cgccggactg
    11941 cgacaacgac acgctactgg tactggcgaa tcctatcgga ccaacctgcc acaaaggcac
    12001 cagcagctgc ttcggcgaca ccgctcacca atggctgttc ctgtatcaac tggaacaact
    12061 gctcgccgaa cgtaaatctg ccgacccgga aacctcttac accgccaaac tgtatgccag
    12121 cggcaccaaa cgcattgcgc agaaagtggg cgaagaaggc gtggaaaccg cactggccgc
    12181 gacggtacat gaccgctttg agctcaccaa cgaggcgtct gatttgatgt atcacctgct
    12241 ggtattgttg caggatcagg atctggattt aacaacggtg attgagaacc tgcgtaaacg
    12301 tcatcagtga gttgcggggt aagcggatgc gatgttgtcg tcgcatccgg caaaaaaaac
    12361 gggcaaggtc tcaccaccct gcccattttc tttaaaaccg aaaagattac ttcgcgttgt
    12421 aattacgcag agcgttacgc cccagcacaa tccccgcgcc aaccatgccg cccagcagca
    12481 ctgccaaaat caaggtaatt gcctttttcg ggctatcgcg acgaataggt aacgtcggtt
    12541 tcattacata gcggtaagca tgaatatcaa gatcatcaac ctttaagctt tcgatatcca
    12601 gcaggttttg acgtgtctga tagtagtttg atgagaacac caacggacgg gtcgcctcat
    12661 gcttaatcat cgactccagc gcttcgctcc ccaaaaggaa caacgtatct tgtgtcacat
    12721 cttcagtctg ctgaacctgt ggctttgtca cctgcgcctg attcgcatac tgcaacgctt
    12781 cctgaatctg acggatacgc agatctttct gctcctgcgc gactacttcc tgagttttca
    12841 gagaatcctg caagtttttc atacgcagcg cgatgttgtc tttcaggtct ttttccagtt
    12901 cttcgtttac ctggtcgtca acttgctgga tatactgcgc cagctgtttc tgcgcacctt
    12961 cagctgtttc accaacataa gaaaccgcta aaggtaagga ctgattttta acggtaggct
    13021 caatggtcag tttttcaggt tcttcctgat tatccagcgt ttccgctaat gctgagaaag
    13081 cagtgctgta acgtccgata agtgaagtct gaatgtcgga gactttcggt acagccggac
    13141 cgtaaatcac attcatcgcg ttggtataac cagcgatttg ccccacatca ggttgagtaa
    13201 cgatagctgt ggaagtccac ttttctttgg caacggccag ataccctata gccagggcaa
    13261 tagccacaat gacagagatg ataattgtca tcttgccgcg ccacaactgc accaggaaat
    13321 caatcaaatc aatctgttcc gggtcatggt tttgcccaga aacattatta ttttctactc
    13381 tcatcattac cctaacggac gaaataattt taagtcgcca tagtttagcg ataatcgcca
    13441 tgaatgctat aggataaatg ataaaaataa tgaattatta caaagggaac ataagagaat
    13501 cagggcgaaa atcgcactga taacaagatg ttagtcgctg ccaaaaagat cgcgggtgta
    13561 gactttgtct gccacatcct taagctcttc tgccatacgg ttggagataa tgacgtcggc
    13621 ttgtatagtc agcttagaac agctttgatt gtaaaatgag cacgttacca gaaaaaacag
    13681 ccaggtttag aactgatacc gattatcttt ttttcttgtc taacggtatg atttaacttt
    13741 cagttatgcc agatgaaaat tggctatatt ctagcctgag cgaggattat aaatgaaatt
    13801 tctggttacg ggagctgctg gctttatcgg tttctatgta agtaaacggc ttcttgcagc
    13861 tggtcatcag gttgtaggga ttgacaactt aaatgattat tacgatgtca acctcaaaca
    13921 agcacgactt gatttactca agcacgacaa tttcagtttt tataaaattg acctggccga
    13981 tcgcgagaaa atggccgcac tgtttgcaga cgagcggttc gatcgcgtaa taaacctcgc
    14041 tgcgcaagcc ggtgtacgtt actcccttga aaatcccaat gcatatgcag atgcaaacct
    14101 gattggattc ctgaacatac tggaaggatg ccgccataat aatgttcagc atctacttta
    14161 cgcttcctcc agttctgttt atggcatgaa ccgcaagatg cctttctcta cagatgactc
    14221 tgtagatcat cctgtttcgc tttatgcagc aactaaaaaa gcgaatgaac tcatggccca
    14281 tacgtattct catttgtatg gcttaccgac cacagggctg cgtttcttta cggtttatgg
    14341 tccatgggga cgtccggata tggcattatt taaatttact aaagccatgc tggaaggtaa
    14401 aagcattgat gtttacaact tcggcaaaat gaagcgtgac tttacttata ttgatgatat
    14461 tgccgaagct attattcgct tacaggatgt tattccagaa aaagatccac agtggactgt
    14521 agaaactgga tcgcctgcaa caagttcagc accgtatcgt gtctataaca ttggtaatag
    14581 ttcgcctgtg gagttgatgg actatatcaa tgccttagaa gaggctctgg gtattgaagc
    14641 caacaagaat atgatgcctc tccaacccgg tgatgtactg gaaaccagtg ctgatacaaa
    14701 agcactgtat gacgtaatag gattcaaacc tgaaacgtca gttaaagagg gggtaaagaa
    14761 ctttgtagaa tggtatcgta acttctataa agtttgattt tacaaaacca taagaaaagg
    14821 ccctaatata ttagggcctt ttcttagaat aaaacaaaat aattaatcat tgccaaacaa
    14881 gtcgcgcgta taaactttat ctgctacatc agccagatcg gcagacatac ggttagaaat
    14941 aataacatca gcttcttgtt tgaacgcatc cagatcacgt accacgcgcg aacggaaaaa
    15001 atcgtcctct ttcatcgctg gttcataaac gattactggc acacctttcg ccttgattcg
    15061 cttcataata ccctgaatcg aggaagcacg gaaattgtct gaaccactct tcataatcag
    15121 acgataaacg ccaacaactt tcggtttacg tgcaaggata gaatcggcaa taaagtcttt
    15181 tcgcgtgcgg ttagcatcaa caattgccga aatcagatta ttcggtacag attgatagtt
    15241 tgccagtaac tgcttggtat ctttcggcag acaataacca ccataaccaa atgagggatt
    15301 gttgtagtga ttaccgatac gcggatcaag gcaaaccccc tcaataattt ggcgggagtt
    15361 aagacccaga ctttcagcgt aactatctag ttcattaaaa taagccacac gcatcgccag
    15421 ataagtattg gcaaaaagtt taatcgcctc agcctcggtt gagtcagtaa acaatattgg
    15481 tatgtcttgc ttaatagcgc cttcctgtaa taacgctgca aaacgttcag cgcgatcgga
    15541 ttgctcacca atcacaatgc gtgatggatg caagttatca taaagagctt tcccttcgcg
    15601 taaaaactcc ggcgaaaaga tcacattttc aataccaaac cgttctttaa tggactctgt
    15661 aaaaccaaca gggatagttg attttataat cattaccgcg ttgggattaa tttctgtcac
    15721 atcgcgaatg accgcttcca cgcttgaggt attaaaataa tttgttttcg ggtcataatc
    15781 ggtaggcgtg gcaataataa cataatcggc atttttatac gcgtcatact tatctgtcgt
    15841 agcgcggaaa ttgagatctt tagtcgccag atactcttca atctccttat caacaatcgg
    15901 tgactgcttc ttgttaagca tgtctacttt ggcctgaacg atatccagtg caaccacttc
    15961 gtgattttgc gcaatcagaa taccatttga aagaccaaca taacctgttc ctgaaattgt
    16021 tattttcatt agctctgact tcttccggtt aaacatttag agtggtcatt aatccaccac
    16081 cacaacttca tctactgcgg gatttttaac gctaatgtag atgaactgtc aaggcagcga
    16141 tcctgctgtg cggcgctgta ttatatcgcg tttttaacta taaattataa aaaaaggccc
    16201 taacctgccg ctttgtataa taaaaaagcc cggagggttt ctccgggcct tgcattgatt
    16261 aattgattta aatcagatta atccagccat tcggtatgga acacaccgtc tttatcaatg
    16321 cgtttataag tatgcgcacc gaaatagtca cgctgtgcct ggatcaggtt cgcaggcaga
    16381 acagcggcac ggtagctatc ataataggca acagcagcgg cgaaggtcgg aaccgggata
    16441 ccgttctgta ctgcgtaagc gacgacatcg cgcagcgcct gctggtagtc atcggcgatt
    16501 tgcttgaagt acggggccag cagcaggtta gcgatctgcg gattttcggc atatgcatcg
    16561 gtgattttct gcaggaactg cgcacggatg atgcagccag cacggaaaat cttcgcgatt
    16621 tcgccgtagt tcagatccca gttgtactct tcagacgccg cacgcagttg agagaacccc
    16681 tgagcgtaag aaacgatttt gcccagatac agtgcacggc gaactttttc gatgaactca
    16741 gccttgttgc cagctggctg cgcttgtggg ccagagagaa ctttagacgc agcaacgcgc
    16801 tgatctttca gagaagagat gtatcgtgca aacacagact cggtaatcag cgacagcggt
    16861 tcgccgagat ccagtgcgct ctggctggtc catttgcccg tacctttgtt tgccgcttca
    16921 tccaggatca catcaaccag gtagttaccg tcttcatctt ttttagtgaa gatgtctttg
    16981 gtgatatcga tcagatagct gctcagttca ccgttattcc actcggtaaa ggtctgcgcc
    17041 aactcttcgt tggaaaggtt caggccgcct ttaagtagag aataggcttc agcaatcagt
    17101 tgcatatcac cgtattcaat accgttgtga accatcttca catagtgacc tgcaccatcg
    17161 gcaccaatat aggtaacgca tggctcaccg tcttcagcca ctgcggcgat tttggtcagg
    17221 atcggtgcaa ccagttcata ggcttctttc tgtccgccag gcataatgga aggacctttc
    17281 agcgcacctt cttcaccgcc ggaaacaccg gtaccaatga agttaaagcc ttctgcagaa
    17341 agctcacgat tacgacgaat ggtgtcctgg aagaaggtat taccaccatc aatgatgatg
    17401 tcacctttat cgaggtatgg cttgagggaa tcaatagcag catccgtgcc tgcacctgct
    17461 ttcaccatta acaggatgcg acgaggcgtt tccagagatt caacaaactc tttcaccgta
    17521 tagtaaggaa ccagtttctt gcctggattt tcggcaatca cttcttccgt cttctcacgg
    17581 gaacggttga aaatagagac ggtataacca cggctttcga tgttgagcgc aaggttgcgc
    17641 cccatcactg ccataccgac gacgccgatc tgttgctttg acattgttta ctcctgttag
    17701 ggggttacta cattaaatat ttaattaata atattaataa cgccaaaaca acttaatcat
    17761 gtaatatttt atttacacaa ttcagtgctg aacggataac ttggtgcata tcataatact
    17821 tatattcagc aaggcgtcct ccgaaaatta ctttactctc catttgcgaa agctctctat
    17881 atttatgata tatatccata ttttttttat cattaatggg ataataaggc tcttgaccct
    17941 cactccactc tattgggtac tcttcagtta taaaggtata ttcagtttca taagagtcat
    18001 caaaatgctt atgctcaatt atcctagtaa aaggaatatc tttttcagta taattaatta
    18061 cggcattgcc ttgataatta gcctcctcaa ttttttttgt tataaacttt aaggatctat
    18121 attctaaagt tcccaacttt ttatcaaaat aagcatctat aggcccagta tatataatcc
    18181 gttccgccat agaattatac ttatcctttt ctgataaata gtcaacatta agcagaagat
    18241 caacaccatt aagcatctta tcaattattt gtgtgtatcc tccgatagga accccctgaa
    18301 atctatcggt gaaataatta ttatcgaaag tgaatcgaac tgggattctt tttataataa
    18361 aaggcggtaa ttcagaacat gaacgtcccc attgtttttc cgtatacccc ttaattagtt
    18421 tttcataaac atcttcccct accagggaaa gagcttgttc ttctaaattt gtgggagtta
    18481 tgttagaata tttacttctt tgtaaatcta ttttatcttg agcttcagaa ggagtttttg
    18541 tcccccataa ctgataaaag gtattcatat tgaaaggtaa gttatataat ttacctttat
    18601 gatatgctaa tggagaatta gtgaatctat taaaagaagc gaatttattt atataattcc
    18661 agatatattg atcgtttgta tgaaatatat gagcaccata cttatgtatg tgaatatcgt
    18721 caactttttc agtatagata ttccctccaa tatgatccct tttctcaatg accaacacac
    18781 gtttatttct tttatttaat tcataagcgc aaaccgcacc aaataaacct gaacctataa
    18841 ttatgaattc atattgcatt gcggttccta tgtcatctaa cttagttaaa attaaagttc
    18901 tttaagtaag caacctttca tatctttatc tgataatata ggattactta aaggccattg
    18961 aatattgagt tctggatcat tccataataa acaacactca tcctcaggat cataatattc
    19021 tgtgcattta tattcaaaat cggccatttc agataataca acaaaaccat gtgcgaaacc
    19081 tggtggtacc caaaattgtt ttttattcat ttcagaaagt aacacaccaa tccattggcc
    19141 ataattaggt gattcttttc taatatcgac ggcaacatca aaaacttcgc cgcgcacaac
    19201 tcttacaagt ttaccttgtg gcttcgtttt ttggaaatgt aatcctctta aaacattttt
    19261 gcttgatcgt gaatagttat cttgtacgaa atcaaattct atatttaata aattttgata
    19321 acgttgtttt tgatatactt ctaaaaaaaa acccctgttg tcaccatata cgaccggttc
    19381 aataatttta actccatcca gaacagtgtc ttgaactttc atatttatta taacctttag
    19441 tgatttctat ttaaaacgtc attaattgta ttagtatact tctctatgat cttattttca
    19501 tcacaatgtg attcagcaaa ttctctcgac ttaatagaca ttgtgttttt catttcgtct
    19561 gtcagtagaa tatacttttc aataatgtca actaagctat caagatcatt aggttgacac
    19621 aaaaaaccat taacttcatt ttgcaccata tccctacagc caacattatc tgttgtcaaa
    19681 atagctaacc cactagaagc accttcaatc aacgctttag gtacaccttc tctataaaat
    19741 gatggtaata ctattgcatc ataatgcttc attatactag caacgtcatc ggaagtccca
    19801 tagtaattaa ctatacccct cgtacaaaaa ccttcaatca attccttcgt gattatcttt
    19861 tcattttttt caaatgcacc taacagtgaa aatgaacaat taggatattt ggattttatt
    19921 atttctgcgg ccttaagata gtgaagtatg cctttggtat atagaagtct agcaacaagt
    19981 atgaatttca cacatgatct ttgctttaaa ttcttatttg agggaagaaa ttttgataaa
    20041 tcaacaccag acccaaatat tcggcatgtt ttctcataat tgacgcagcc agaattaatc
    20101 aataactgac gatcatcctc gttttgaaaa aaaacgaatg ctgctttctt taatgctatc
    20161 ttatataata gcttaacaat ttgacttaat atcgtattac tattaacaaa tgcacttcca
    20221 aggccagaaa tattaggtat cactttcgcg tcaaatttat aagcaagcaa accacaatat
    20281 atattagctt tgggtgtaaa cgttaatata acctgtggat tgaatttttt tataatttta
    20341 taatatgata ttagagatgt acattcagta aaaatattaa tagattttgg tttaagatca
    20401 accttctcaa atttagcgcc gaattttaaa atagaatcct tatattcata atccggtaca
    20461 accactaata catcaaaccc tatattaata agtgccttaa ttgtgcttcg tctaaaatta
    20521 tatatatacc aactactatt agcagttaaa actattttta aggaatgatt atcccttaaa
    20581 tgatcctttt cgtccaagca gtccatcttt tatcccctta aaaatataat ttaatcgttg
    20641 tcctccacgt tcacaaaaag cgtaaataat gattcggaca ggcattgtta tcaatttttt
    20701 taacttatat cttaaaggaa atacaggctc tctcagagct aataaccaat ttctataaac
    20761 ataatacaaa cgaaatggac tgcaaactgt aaatgtttta atccccataa tatttatatc
    20821 tttagatcct atattgtgag aaataaggac tttatctgtc actaggatat tccagccttc
    20881 tttcctagct ctgaaactcc attctatgtc aattaaatcg ataaaccaag atactttatt
    20941 taatccaata ttgataattg cctctagggg tatgagtgca ccagaagata ttatactttc
    21001 aacatcatgt atcgtttcac ttatctggga gcccagcttt atttcacgat catacttttt
    21061 cccattacgt tcatttatta ttgttggacc taatgcagca atattactcc ggagagagca
    21121 agcgtactca tactctttta acattgatga tatataatct tttgatatac atgaatcttg
    21181 atcaaatgta aagaataagg actttcctaa tccgatagct ttaatgaaac catagttctg
    21241 cgcaaacgca atgcctttgt tatctcctaa atgatagtaa tgaatgttgt tattacacaa
    21301 aacatcactt tctaagtgga gctcaggtgt attgtcaaca agtaatattt cgcactgttt
    21361 ttttcccagt gagtcaatca ttttattgat tttactaaca tcaggataat atagtacaat
    21421 tatcaccgct actctattca ttttttattc cacttataag atccatgatg agtccttttt
    21481 acaaaatttt tatcggatac tttaaaggtt atgtatcgat aaaacaaaaa atatcccgac
    21541 aataatacaa tcttccagtc ctgatatata tatgcataca caatagcagc atcaaaaaag
    21601 aaaaagtaat atttaaccct aaataaatca gggtaaataa taaaatcctt taacctttta
    21661 ataccatatt tctccttaca ggcgtgttct aatgttctga ttaaagggaa taataataat
    21721 atgataaaaa caaaaaatac actgcatgtg acagtgggta tcaaaggaat aatgtaacga
    21781 catgacacca aagaaaaata agtgattata tttctcttat cccggattgt attatgcaaa
    21841 taaaaggaga taattaaaaa ccctatacat aatacaaaat agataacagt atagtgatga
    21901 gcaatgatat cactttgata aattaataac gcgaatgata caaaaaaata aacaactcta
    21961 atgaaaatta tacttgataa tttactttta attgtatcac gcagctctcc acctcttatt
    22021 gttggtgctt tttctgtatt tattgttcta tagtcattgt ctaagtagcc tatttcataa
    22081 atggacatgg tcatcataaa tgacagaagc aaagatacaa aactaccatt atacaaaaaa
    22141 caacacagca atagaaaccc tggatatata ataaaccagc taattttttc atgccatgtt
    22201 ttcaatcttg aaatgaataa atatgataat gggaaataca atatcacata aacctcactt
    22261 tatctttgga gacaccaaat ctatttaata gtactctcca tttattttta tctttggctt
    22321 ttgaaataat cactgctgta tctgcaagtt taataagatt aatatcactg aaattatcag
    22381 tgacaatcaa acttacaggg ttattaactt gtaaatgctt tataccagta agattatatt
    22441 ctaataaccc tgttgattta ttgtcgataa attctaattt agatgatact gcctcaacat
    22501 tcaaattttt agcaattaca tttatgacag gatcaacgga agcagacatt aaaatgatct
    22561 tctcatgttt atatcgttct aaaagtgcca taacttcatt cttttcttta aaaatgagaa
    22621 attcatcata aaacaaattc gccaactctt ccaaagtaga cttttcatat ccttctaatg
    22681 tcttcaaaaa atgttttcgt aaggaacata tacgcaattt atgtagcaac tttccaaata
    22741 aggagcgtaa taataagcat ttaattaact tggtatattt tttttgtttc ctatgtacaa
    22801 atacaacata atcaaaagtt gtattcgaca aataaagagt gccacataca tcaaatacaa
    22861 caatatgttc gagcatgtta aactcccttc aaagttagag ttaatcttga gcaaaaacat
    22921 atcacataaa gcattgcaat tgcataaata tagaacatca acatatataa ttggtcaaaa
    22981 aattgaaata acaaggggaa gtacaaaata gagcaaatga caactgatat cgttttctta
    23041 tttttttttg ctacattgta caaagatgaa tgaaagaaac ctatgacaaa aaagaaaatt
    23101 aatgagtaca aaaaatcaga atattttgtt agcgaataaa atattgtaaa aacatttgtc
    23161 ttatactctt tatatgatat aaaattagct aatccacatg tagcatctcc attacaatct
    23221 ataactactg ctttaccttg caaaaccgaa tctaatgcaa aaatgtttgc caagctatag
    23281 ttcatcaatc catattttaa cgcttcgaat gctcctgaag agtcgtcaat tttatttaaa
    23341 aacaacatag ataaatagaa aaaaaatata ataccagaca ctgtgacaag taaatatttt
    23401 aaagatattt ttgaaaaaaa taatcgcaaa aacactattg gtataattag taataaaact
    23461 ttaattttag ctgttgataa taacgcataa aaaagtgaag taaaaaaaac aaaataaaat
    23521 gttcgattat tatatggtaa ccgggcccgc tctccttctt caatcttttt atatttattt
    23581 ttaaaatata aaaagctcca tacatatacc aatgggtata aaagatagta tatataccca
    23641 tatattttta ttaatcccga tttatctccg taattaattt ctgtacgtga atttatatag
    23701 gattcagtga agcccccctt ataataatat aaaaaaacta ttaaagtata gattaaaata
    23761 acaaacgaga taatatttgt aattaatact aacgcttttg tattgtttat attataggaa
    23821 aatacatgtt caaatatagg agcgtaaggt tttgccagta gagcccctac cgaaaaagat
    23881 aaacatgaaa ataaaattat acataatgta tagttagtta tgtctccatt tactcccgac
    23941 aaaaataaca gcccccccca gataaagaat agaatcgccg acggcgattt aatatcttta
    24001 ttaatactca gtaataatcc tgaatacata agcattatta tagctataaa aatggtcatg
    24061 ttcatttaag cttagctcta agttgagaaa ttaattgagc tcctcttcca ctgcattcat
    24121 cagtgttaat tacaaattcc tcaccgactt taaaaacttc tttattttta ttaatccata
    24181 cattcagaag tcgctcagca ataaagccga acacacgtga ttgatattca tcgtatctgc
    24241 ataaatttat ttctttctcc agctcatcta atatggaaaa caaccaatca caataacaat
    24301 caaaaatccc agccttcatt ataaacatat tataaagcga tatttttttt tgttctaaaa
    24361 gttctctgaa tgcaacacta taatcaggat ataatttatc aactattttt tttgccaaca
    24421 ttagatcttc gacattatgg aatttcctgt agtgttcaac aacagatagc ttcaaactct
    24481 ctttcaccgg aataattata tcatattgtt tcattttatt agaaatatta gctctgtcat
    24541 atatcctcac ctctttaaat ttaaaattcg ataaaacatt tccaaaatac ctcctataat
    24601 gaaccaagcc aatataatca tcattaaaaa gtttattttt ccaaagccaa tatataacgg
    24661 tcagctcaca ataattttta tttttacatg atatattatt ccctgtatca tctcccaaca
    24721 cttgatcaag cattttccct gatattttct tacccgcatg aatagggata tagcactcat
    24781 gattaggtaa ttcagtttgt ttatggcaag caatgaataa agccattaat attcctcttt
    24841 atttaaacaa atttattttc tttcttttta agaaaagata catcaatgat gcaactacgg
    24901 tttctgtaat taaaaccgtc atcgcagccc catacgcccc ggcaaaaaag atcaaaggag
    24961 caatgattat cacatgcata acaccacaaa ttagcagtat tttactaaat tgtcttttat
    25021 aaccatgtgt cagcatggtt tgaatgccaa aaaaattact aagagaaata ataaatggca
    25081 aaaaggctaa tattcttaaa atactaattg actcagtata tttatctccg actccatatc
    25141 ttattattat tggagaaagt atgcacagga gtaatgaacc tgaaaacgaa atgaataata
    25201 cgcccttaaa tgattttttc agaagattca tactttttgc ataattttct tcaaacaatg
    25261 aattaattct tggataaaca gcttgataaa taggattcat tagactctgg gctgcatttc
    25321 taattgtatt agcagcgtta aagtagccaa cagagacagg tccacatata aacccaagaa
    25381 caacaacagt tgttgttgta tataagctaa tagcagctgt tgaaatgaaa atatgccatc
    25441 cgctttttaa tgaataaatt ataccatcat aatcaaatac caatttccca atccagttat
    25501 tatttataat aatagcaaat ccaattaaac ctgctataaa attaacgccg ccttgaatca
    25561 aagcggctaa ccagatatct tgtggatttt ttactaacaa aaaagttaat ggtattaata
    25621 ataatcttgc acttaaacta cataatgtaa tccatttcat tttttctaat ccctggaaaa
    25681 accaaacagg gtataatata ttacctaaca ccattggaat aaatgatatt aacaccactt
    25741 gagcataata tagctcctta ataaaaaatg ttattccgaa aaatataaca attgccgaaa
    25801 gtgcaagtat aatcttacta aagaagacat tccaaaatat tgttgttaat ttttccttgt
    25861 cattcttact tttcgaaaca tcttgtgttg ctgaccaatt aaacccataa tcagtcacca
    25921 tcacaagata ttgcattgtt gcttgacaaa accctaatag accaaaagag tatggtccta
    25981 atactctaac aagataagga aatgttaaca atggcagtat aaaataactt ccttgcaata
    26041 tagctaaata gaagatattt ttattaagag aggtaacaag cttcaatgca atctccgagc
    26101 ctatttatat agctgcaact agttaatatt atgatatttt attatttatg atatttagca
    26161 gatactgacc ataagcattt tttttcagtg gttcagctaa tattttcacc tgctcagaat
    26221 caataaaccc tttacggtaa gcaatttctt ccgggcagga aactttcaac ccctgacgtt
    26281 cttcaattgt agcaatgaag ttgcttgcct caatcaggct ttgatgtgtc cccgtgtcca
    26341 gccacgcata accacgcccc atcatggcaa cggataaacg cccctgttcc atataaatac
    26401 ggttaatatc ggtaatttcc agttcaccac gggcagaagg cttaaggttt ttcgccattt
    26461 cgacaacgtc gttatcatag aaataaagcc cggttaccgc ataattactt tttggttgta
    26521 gcggtttttc ttccaggctt attgccgtac cgtttttatc aaactcaacg acaccgtagc
    26581 gttcaggatc attaacgtga taggcaaata ccgttgcacc actttctttg tcaacagcgg
    26641 tatccattaa cttcggcaga tcgtggccgt agaagatatt atcaccaaga accaaagcac
    26701 aatcatcacc accgataaac tcttcaccga taataaacgc ctgcgcaagc ccatctggag
    26761 tcggttgcac tttgtactga agatttagcc cccactggct accgtcaccc agcagttgtt
    26821 gaaaacgagg agtatcctgt ggcgtactaa taatcagaat atcgcgaata cccgccaaca
    26881 tcagtgtaga gagcgggtaa tagatcatcg gcttatcata aataggtaat agctgtttac
    26941 tgacagccat agtcacagga taaagacgtg taccagaacc acccgctaaa ataatacctt
    27001 tacgcgtttt catttcatca ttccttttaa ttcatcttgc tccatcatca cgaacaagat
    27061 gcaaaaacta ttaaattgct gtagtcgtaa ataattcgtt gagcattcgt ttcacgccaa
    27121 cctgccagtc aggcaaaaca agcgcaaagt tctgctgaaa tttttctgta ttaaggcgag
    27181 agttatgtgg acgacgagct ggtgtaggat aggctgttgc tggtactgcg ttgagcttgt
    27241 tgagtgcaag gggaatacct gctttgcgcg cctcttcaaa aaccagcgca gcataatcgt
    27301 gccaggttgt ggtaccactg gctaccagat ggtacatgcc tgcgacttct ggtttattca
    27361 gtgccacacg aatagcatgt gccgtacaat ctgccagcag ctcagcacct gttggcgcac
    27421 caaattgatc attaatcaca gccagttctt cgcgctcttt tgccagacgc aacatcgttt
    27481 tggcgaagtt atttccttta cctgcgtata cccagctggt acggaaaata agatgcttcg
    27541 cgcaatgttc ctgtaacgct ttttctccgg ctaacttggt ttcaccgtaa acatttagcg
    27601 gtgcggttgc atccgtctcc agccatggta tttcaccggt tcccggaaat acgtagtcag
    27661 ttgagtaatg aattacccag gccccaactt cattagccgc tttggcaatt gattcaacgc
    27721 tggtcgcatt gagtaattgt gcaaattcgg gttctgactc agccttatct actgcggtat
    27781 gagccgcagc attaacaatt acatcagggc gaattttttt gacggtttca gccacacctt
    27841 caggattact aaaatcacca caataatcag tggagtgaac atcaagagca atcaaattac
    27901 ccaaaggtgc gagagcacgc tgtagttccc aacctacctg ccctgttttg ccgaaaagga
    27961 gaatattcat tactggcggc cctcatagtt ctgttcaatc cacgattgat aagcaccact
    28021 tttcacattc tcgacccatt ttgcattagc caggtaccat tccactgttt tacgaatccc
    28081 gctctcaaac gtttcctgcg gtttccagcc caattcgcgg ctaatcttct ctgcatcaat
    28141 cgcataacgg cgatcgtgtc ccgggcgatc ggcaacataa gtaatttgct cacggtaaga
    28201 tttctctttc ggtacaatct catccaacaa atcacaaata gtgagcacta catcgatgtt
    28261 tttcttttcg ttgtgtccac caatgttata agtttcaccc gctttacctt cggttacgac
    28321 gatatataac gcacgcgcat gatcttcaac atacagccag tcacgaattt gatccccttt
    28381 gccataaata ggtaatgcct taccttccag agcattaaga attactagtg gaatcaattt
    28441 ttccggaaag tgataaggac cgtagttatt cgaacagtta gtcacaatgg tcggtaaacc
    28501 ataggtacgt ttccacgcac ggactaaatg atcgctggat gcttttgatg cggaataagg
    28561 actactaggc gcgtaagctg tcgtctcagt aaagaggggt aattgttctt tattatttac
    28621 ttcgtcagga tgaggcaaat caccatagac ttcgtcagta gaaatatgat gaaaacggaa
    28681 gctatttttc ttgtcgccat caagagcaga ccagtaattg cgagccgctt ccaaaaggac
    28741 ataagtacca acaatattgg tttcaataaa tgccgcaggg cctgtaattg aacgatccac
    28801 atggctttca gcagccaggt gcatcactgc atccggctga tgctgagcaa aaatccgcgc
    28861 cattgcagca gcatcgcaaa tatcagcatg ttcaaaaaca tagcgttcag agtcagaaac
    28921 atcagcaagt gattccaggt ttccggcgta cgttaattta tcgacattaa caacactatc
    28981 ctgcgtatta tttataatgt gacgaactac agcagaacca ataaatcctg cgccaccagt
    29041 aacaagtatc ttcactttat tattccatat tacttcagag catgctgtga aataagcggc
    29101 tctcagtttg attaatagag gtattaatgc acgctaccgc ccctggcttt acagctacca
    29161 gagcactgca tgcatgtcta cgatgtgacg agcgttaccc actcgcgcta aacccgaaaa
    29221 attcaaacgc taattgtctt accaatccgc tctggaaaca aggaaaatcc tggaaaactt
    29281 tgactaaaat cctattgcta actcgttgtt atcctgattg tttatataaa acaacggcag
    29341 gaatattcgc aacaaattac tttcgccacg aatcttcact gccgttataa ttttcttatc
    29401 aaccgttaca tccggtcaga ttttcattat tcgcttaaca acttctcaat ccctttacgg
    29461 aacttcgccc cttctttcag gttgcgtagt ccatacttca cgaacgcttg catatagccc
    29521 atttttttac cgcagtcgta gctgtcacct gtcatcagca tggcatcaac ggactgtttt
    29581 ttcgccagtt cagcaatggc atcagtcagc tgaatacgtc cccatgcacc aggctgagta
    29641 cgttccagtt ccggccaaat atcggcagaa agcacatagc gaccaacggc catgatgtct
    29701 gagtccagcg tctgcggctg atccggtttt tcgataaatt cgacgatgcg gctgacttta
    29761 ccttcgcgat ccagtggttc tttggtctgg atgaccgagt attcagagag gtcacccggc
    29821 atacgttttg ccagcacctg actgcggccc gtttcattga aacgtgcaat catggcagca
    29881 aggttgtaac gcagcgggtc ggcgctggcg tcgtcgatca caacgtctgg cagcaccacg
    29941 acaaatggat tgtcaccaat ggcaggtcgt gcacataaaa tggagtggcc caaacctaaa
    30001 ggttcgccct gacgcacgtt cataatggtc acgcccggcg gacagatgga ctgcacttcc
    30061 gcaagcagtt gacgctttac gcgctgttca aggagagatt ctaattcata agaggtgtcg
    30121 aagtggtttt cgaccgcgtt cttggacgcg tgagttacca ggaggatttc tttgatccct
    30181 gcagccacaa tctcgtcaac aatgtactga atcattggct tgtcgacgat cggtagcatc
    30241 tctttgggaa tcgccttagt ggcaggcaac atatgcatcc caagacccgc tacaggaata
    30301 actgctttta aattcgtcat tatttcatcc acctgtaaaa tggttgctga attatagctt
    30361 gttcgatttt tttcgccagc atcaattacc ctgaattgat tactgaatta cttgtgatgt
    30421 tacgccgctt cgttgtggat tgcagtagca ttgttcctaa gtatggctcc atttttccag
    30481 gaatggtcgc aaatctactc cccccgttcc ggcaatctaa agttaatctt ttccacatta
    30541 acaatatggt gattaatcct gtcgatatcg acggagcttt gccctctttc attcaccgca
    30601 tgaacatttg caagagatag tagtgtttct tttttcgcca taaagacgcc gcgaacgtct
    30661 ttgcgcatgt cgaagttcat gctcaatgct ggtccaacag aggattcctg catcacatta
    30721 atattacgca taaaaaggtg ttgtggtttg ttgtgtaact ccagcgacgc acgcttcatc
    30781 tcaatgttag tcagcgccac acaggagaca gcattcccgg cggagatttg gatgccgcgc
    30841 aatttataag caagatgggt gttatctagt tgaatattat tcactcggaa attttgcggt
    30901 atcgagagat atttgccttt aattacccca tagccgatta acatcccggc gctattaatc
    30961 atttcaatat tatcaatcac gaaattgtca caaccgtaaa tagcaactgt cgcgttatca
    31021 atacctgctt tcttactgaa atccggcgtg atattgcggg ctttgatatt acgaataaca
    31081 aaatgtttac cattttcaac atggatcagt tgccgacaat ccgatcccgt gatattcgcc
    31141 acgacaaagt ttttcactgc ctggtcttcc ggataattat tatcgtaggt acttcccgca
    31201 agacctatgc cgatgcccca gttgattttg ccgttggtac agttgatgcg ctcaataacg
    31261 tggtcagata tcaaaatatc actgtcgtta atcgccacgt tccattcaat ggcatcgccc
    31321 tgtaagtcgc tgaacttaca attggtgatg ttggcaccga taatctggtt atgaaatccc
    31381 tggcgtaaga tggcgtaatt agcgtggcta acggtcaggt tatcgatggt caggttgcgc
    31441 atgacctgtt tgtttttgcc gccgatataa atctgcgtta ccgggccaaa gccgctcata
    31501 gtcagccctt tgatggtgca gtcggaacca cgcacatcca gggtgatgtt atgcatactg
    31561 ccgccctcct cccctgtcac ctggctgccg tcctgtaaaa caaatcgccc tctgccgttg
    31621 ccgcgcaggc ttccaaggat gtgtaacgtt ttacctgcag gaatgaagat gccggtgttg
    31681 atattgtcgc aaaccaatcc gccaggcacg acgaccgttt gcccttcgct gaaggcttgt
    31741 ttaaatgagg cgatccagtc gtgagggttg tagtcgttaa tgttaacgct ttgtcgggcg
    31801 ggaagtgcgc gagcgaaagg ggtatggagg aaggcaagcg ccgagcttgc cgtcaggaag
    31861 gtgcgtcggg agagtttttt aaatggcatg cgttctcctc tataaagcct gcaacaagct
    31921 ggcgagttct cgattaatca cctgctggtt aaaatcgtgt tcgacttttt cgcgcgcacg
    31981 tttgacaacc gtagtaagtt cgtcggtgtc cagttggcta aacgccgcca gtcgttgcgc
    32041 cagtgcgcga gcatcgttct caggcaccag ccagccggat ttatcggcct ccaccagttc
    32101 cggtattccg ctatgcagag tagaaaccac cggaatgccg accgccatcg cttccatcag
    32161 cgccaccgga atgccttcca tatcgccgtc agcacccgtt accgatggca acagaaagac
    32221 atccgcatcg tcgagcatcg ccttcacttc gtggcttggt ttaaagcccg gcatctctac
    32281 cacatcctcc agttgatatt gttcgatgag cgtgcgcagg cgtcgttccc acgggccaat
    32341 gccgaggatg cgataacgaa atgccacgcc ctgctctttc aactgccggc aggcttcgat
    32401 cgccacatgc aggccttttt tctcggttaa gcgtgcgaca gatatgattt ccagcggcgt
    32461 tgcaggcgct tttaccggac gcgggctaaa gcgcgtcatg tctacaccca tgcgcgatac
    32521 ggcaattttt tccctcgggc agcccatttt ttgcagcctt ccggcccaca gttcgcttat
    32581 cggtagcatc aaatcgccac gacgaaacag ttgttgatat tcgggagtgt aatggttgag
    32641 cacttcccga ctggagatat caataccgtg gaagatagtg gcaattttgc cgcgaatgac
    32701 atccagttcg cgtagttttg ctgcggttac ccccgcaggg ccaaaatgag cgataaaaac
    32761 atcagcatga aacggtgttg cgacctggcc gcaaatggca gacaaaatca ggttccgcga
    32821 ctcagcacca tagcgtttga ggttgagcgc ctgccaggta tttttacgat gaatgccgcg
    32881 taaggtctgg ctggcgcggt agcgcagttt cgccactttg ccttgtggtt cgtcctgtaa
    32941 ccagcgagtt ctggcggcaa ggttatattt cgtccatgcc gcgtgggtgt tttgcgtatc
    33001 gcctttttgc agcgcgacaa tctccacctc aaagcccata tcaataaacg cagtgatttg
    33061 gttgagaacg aaggtttccg acgacagcgg aaatttcaat aagaagaagc cgaccttcat
    33121 ttcgcctccc cgatgcgctc aagcacagac tgcaccatcc gcattcccgt ctgacgctca
    33181 cgactgacgg cttcgttaag tcgcgcgttc agcgccggaa gttggcctaa ggtatccgca
    33241 accatcgctt gcaggctgcc gtccagtaaa tggcgaatat caatcgccat ctctggcagc
    33301 cccagttgtt gcataatccc ggcggatttg tgttcgtagt tgatggcaat tgccggagtg
    33361 gagaaattca tcgagataat ggcagagtgc aggcgcgtac ctacggtgag ttcacaggca
    33421 ccgaggattt tgcccatttc cagatcgttg agctcatcca tcaccacgtg ataacgggca
    33481 ggatcgctga tgtgctgacg caggttgagc gccaccatgc ggtcgtcttt gttatagctg
    33541 tcgatacccg tacaggtgga gagcgcaatc acctgatagc cttcgtcgag aatgcgattg
    33601 accaccccgg caaaggcttt ttcatacgct tcttgagtgg tgccgagacg tttgtcgaac
    33661 ggtgccagtt cgcgcagggt aattgccacc gctttctgtt gtgcggcaac atccagccag
    33721 tgttgaacag catagctggc ggtgaagtct tcaatgtggt gatcgaccag ccacgcggta
    33781 tcgacgccat tttcaacttt tgcggtagtg atattgctgc gtttcattag atccaggctg
    33841 accgattcgc gcaggatcag cgcgtcgcag tgaccgaata cgtagttcgc cagttggtta
    33901 aattgctcat cctggaacgg gccgacgctg tgaccaatca taaacagcgg ctttttcgcc
    33961 ataaacgtgc aaagcgcatg ttcaaactgc ggcacgccgt agagatcgac aaaaaacgat
    34021 ccgccgacct ggataatggc atcgtaacct gacagcaggc gcacaaagtc agtgaatccc
    34081 tgggcaatgg cgatattacg cagcttgccg gtgtcggtga cgcgtgagag caatacctgg
    34141 tgctggtagc ggcgacggag gacttttttt acgcgcccga caacgcccgc cgcgctgttg
    34201 tgttgtttca tttgcaggaa cagcggatcg cccattaccg gacggttgag cagccaggaa
    34261 gaactgaccg gatagcggct cattacgtcc acttcggcgt gttgattgag gatgttgatg
    34321 gcatcaagta agccgcgcaa gatggcgctg tcgccgcgat tgccgcaagt gtggttgccc
    34381 agaatcagta atttcatttt ttcctcataa atttgatgcc aagtgaggct gtgttttttg
    34441 tgttcgttgc cgctttttgc ctggcgcgtc ttatcaggcc tacaagtccc gagcacagag
    34501 ccgtaggccg gataaggcgt tcacgccgca tccggcaact attgccggaa ccgaaaacaa
    34561 ccattcaccc ggcccgcaaa agcattttca ttttttcgct gcgacaaaac tgacgcttca
    34621 cttccaccac cagcggatgg cgcgacaaca cgatcatcac cacaaacgcc agcacgcctg
    34681 cgataatttg caccgccagc agcatcccca gcgccagttg ccctttcagc acaatgccca
    34741 gcgcataact gaccaccagc gtcggcaacg agagataaaa cggcagccac aaactcagga
    34801 tgtactggcg ataactggaa ccaagaaccg gtttaatcat cacgaagtaa ctcagaatgg
    34861 tgttgataat ttgcaccagc aggaagccaa gcgtgacgcc gatcgcgccc gccatctgcc
    34921 caccaataac aatcgccgga ataaacagaa atgttttgaa tacgttgaat ttaaagctga
    34981 tatcgacccg cgctttcgcc atcagcagcg aaccaatcgg gttacccacg gagcgcagca
    35041 gacccacaat acacagcaat tgcagcaccg gaataatgct gttccacttt tcgccgaata
    35101 ccagcggtac gaagttattc gacaccacca tcagcccgag cagcgccgga aagttgataa
    35161 tccccaccac cgacagcagc ttgtagaagt tcacgcgcag cttttcggtg tcgtcctgaa
    35221 ttttggcaaa cgccggaaac aacacacggg tgatgattgg gttcagcttc atcggcggca
    35281 caacggccac gttgtacgcc aggttgtatc cccctgccac gcccgcgcca agaatacgcg
    35341 ccagcaccag cgttgaaagg ttggtgttga gatagttgat gatgctgtcc gccgtcagcc
    35401 aggcaccaaa acgtaagttc ggcgcaactg acgccagcga gaaatgcaga ccggggcgat
    35461 aaatttttcg accaaagtag ccaaacagca gcgttcttac cgcactattg accagataac
    35521 cgaggatcgc ggtcatcgcc agcggccaga aatgggcgct aaccaccgta aaagtgaagc
    35581 ccgccagcac cgcgctggtt tcgatcatgc cgattttgtt gaactccagt tccttttgca
    35641 tcaacgcgcg gaactgttgc ccgtggggga tcaccacaaa cgccagcgac aatgttttaa
    35701 tcaacggtgc caggtccggg ttattcagca cgtcaccaat ggcatcactc aacaaaaaca
    35761 ccgccacaca caccacgatc cccagcccga cgttcagcca gtacagcgtg gtgagttcca
    35821 ggtggctgat ttcttttcgc tgaataatcg agttagcgat accgaagtca gaaagcgtat
    35881 ctgccagcgc gatgatcacc agcgacacgg taagcaaacc gaactggtgg ttgtcgataa
    35941 tccgcgccag cacggtcatc tgcaccagcc cgaggccgat gatgatcacc gtagcaatcg
    36001 ccgaccactt tgcgccgctg atggtctttt cacgtaagct catatcaata tgccgctttg
    36061 ttaacgaagc ccttgaatac cgtcaggaaa acgattttga tatcgaacca gacgctccat
    36121 tcgcggatgt actcaaggtc gaactcgacg cgtttttcca ttttctccag cgtgtcggtt
    36181 tcgccacgcc agccattaat ctgcgcccag ccggtaatgc ccggtttcac cttatggcgc
    36241 agcatgtagc cttcaatgag ctggcgatac tgttcgttat gcgccaccgc gtgtggacgt
    36301 ggaccgacaa tcgacatccc cccggtcagc acattgataa actgcggcaa ttcatccagc
    36361 gaggtgcggc gcagaaagtt ccccactttg gtgacgcgcg gatcgttctg cgtcgcctgg
    36421 gtcaccactt tgtcgttctc catcactttc atggaacgaa acttccacac tttgatcggc
    36481 ttgccatcca tgccatagcg agtctggcgg aaaataaccg gccctggtga actgagtttc
    36541 accgccagcg caatacagca cagcaccggg gagatcagca acagaataag cgtcgccagc
    36601 acaatgtctt ccgcacgttt gagcaggcgg ttaaccccgg aaagcggcgt gtcgtaaagc
    36661 ggcaccaccg gaacgccgtt catctcttcg agacgtgaat ggagaatgtt gaaggtaaag
    36721 acatcgggga tcagcagcac cgaacaggtg gtatccgcca gttgatggac cagttttttc
    36781 actcgcgcgc cgtcgcacat ctgcatcgcg atatagacgt tatgaatttt gcccgctttc
    36841 gcatcctcga ccagctgttg cagattgccc gcccagtcgt tagaaacgcc gcccggtttc
    36901 gggtcgtggt aaacccccac cacttcaaac cctaaccacg gctgattacg gaagctctcc
    36961 atcagcattt gtccggcggc taaatctccc gctacggcga ccatacgctt gttatagcca
    37021 tgattacgca gccagcccgc cccaatgcga atacatgaac ggcaaaccac cagtccgata
    37081 ctggtcagcc cataccacgc cagccagatt ttcagttgcg tgtcgaaatc attgttgaac
    37141 gccaccagtc cggcgctgaa aatcacgctt aaggtccagt tttgtagcaa cagggcaaat
    37201 tctgtcgctg cccgaacacc gcgccatgag cgataaaaat cggtgatgcc gcccagcatc
    37261 tggaacacca ccagcgtaat caacgccacc aacaggtgca tgtagaggaa tgacagtccg
    37321 ctcacttcgc aaaccagcca tagtccggca aacatgatgg tgatatctga aaagcgttgc
    37381 accatagaga ttaacgatgc attggttttc gctcgctcgc gcttttttag atttgtcatc
    37441 gttgttcctg ttattagccc cttacccgca gtggggtaag ggaagatccg acattactca
    37501 ttcagcaacg tcagcagagt tcgcgttcgc gcttccatca gcggcacatc accgcgcgat
    37561 tccacattca accgcaccac cggttcggtg ttggaggtgc gcaggttaaa gcgccagtcg
    37621 gcaaaggtca tgctgatgcc atcggtacga tccaccgaca gcgcctcacg gctaaaatgc
    37681 tgttcgacgc gattaatcgc ctcaacgggt tgcgccagtt tgctgttgat ctcaccgctt
    37741 gccggaaacg ccgccatccg gtcgcgcacc agttcgccca gcgtttttcc tttcaggcac
    37801 accagttcgg ctaccagcag ccacgggatc atgccgctgt cgcagtaagc gaaatcacgg
    37861 aagtaatggt gagcgctcat ttcgccaccg tagatggcgt cttccttgcg catccgttct
    37921 ttaataaagg cgtgtccggt tttcgacatt accggggtgc cgcctgcggc agtcaccaca
    37981 tcaatagtgt tccaggagag acgcggatca tggatgatct tcgcgccggg atttttttcg
    38041 aggaacgctt ctgccagcag gccgacaatg tagtagccct cgataaactg ccctttttcg
    38101 tcaaacagaa aacagcggtc aaaatcgcca tcaaaggcaa tgcccatatc cgcgccgtgt
    38161 ttgatgaccg cattgcgggt gtcgtcgcga cattccggca gcagcgggtt aggaataccg
    38221 ttggggaaat tgccgtccgg tgtgttgtgt actttgatta attccacggg cgcgccgagg
    38281 gctttaaagc gggcttcaat ggcgtctacc accggacccg ctgcgccatt cccggagtta
    38341 atcaccagct tgagcggcgt gaggtttttg acattgatat aaccgaacag gtgatcaacg
    38401 taagcgtcac gcaggttgat ttgctgatag cggccgcgtt tggtttcatc gacgggagga
    38461 aagtcgttgg cttcagccag acgctggacg tcgcgcagtc cggtatcacc gctgatcggg
    38521 cgagcccctt cgcgcaccag tttcatgccg ttataatcca tcgggttatg gctggcggta
    38581 acttcaatgc cgccatccac gccgagatgg aacgtggcga aatagatctc ttcggtgccg
    38641 gacatgccaa tatccagcac atcgacgccc gcatcctgta aacctctcgc cagcgccagt
    38701 tttaaggttt cgctggtgag gcggacatca ccgcctaaca caatggtttt cggtttgaga
    38761 aattcgccat aggcgcgacc aatgcgccag gcgatatctt cattcagttc ttcgcctagt
    38821 tttccgcgaa tatcataggc tttaaagcag gttaattttt tcatatcgtt accctttttc
    38881 aggcaatagt tggccctgac cgaagcggcc aattttattt ttgtcgttat ttacaccgcg
    38941 gtttcgcatt cattgcctga tgcgacgctg ccgcgtctta tcaggactac aaacccgaac
    39001 cgtaggtcgg ataaggcgtt cacgccgcat ccgacaaaca gctcctgatg cgacgtttac
    39061 acccgtccgt agcgatccgc gaagcgcacc acatcatcct cttcgagata agagccggag
    39121 cgcacttcaa ttaaatcgag cggaattttc cccgggtttt ccaggcagtg cgtcgccccc
    39181 agcggaatat aaatggactc gttttcacca agcagtttga tatcaccatc aatggtgact
    39241 tttgccgttc ccgcgaccac tacccagtgt tccgcgcggt gatggtgcat ctgtaccgac
    39301 aagccctcgc ccggtttcac ggtgatgcgt ttcacctggt agcggtcgcc cgcgtcgata
    39361 gagtcatatt tgccccacgg acgatacact tcgcgatgca cccgatgctc atggcgacca
    39421 tcggctttga tctgctcgac cacttttttc acatcctgca ccgcgttacg gtcggcaatc
    39481 agcaccgcat ctttggtctg caccactacc agatctttca ccccgacggt ggtgaccagg
    39541 ccagattcgg cgtacacata gctgttttca gttttgtgat taatcacatc accgtggcaa
    39601 acgttgccct cggcggtgtg ggcgctgatc tcccataatg aagaccagga accgacatcg
    39661 ctccagcccg catccatcgg caccacaacg gcatctgccg tacgttccat gaccgcgtaa
    39721 tccaccgact cttccgggca ggcgagaaac gcttcttcat ccacgcgaat aaaatcgaga
    39781 tccggatcga cggcgctcat cgcttgttca caggcgtcga gaatatccgg gcgatatttt
    39841 ttcagttctt cgagatagcg tccggcgcgg aacaggaaca tgccgctgtt ccagtaatat
    39901 tcgccgcttg ccacataggc ctgggcggtt tccagattcg gtttttcgac aaactgcgcc
    39961 acttcaaagg ccaccgtatc ctgctcaccc gcagatactt caccgcgacg aatatagcca
    40021 tatccggttt caggtagatc cggcacaatg ccgaaggtca ccagcttgcc cgcttcggca
    40081 tacggcatgg cattacgcac ggcggcacgg aacgcgtctt catcggcaat cacatgatcc
    40141 gccgccaata ccagcattaa cgggtcgctc tccgggctat gacgttttgc cgccagcgcc
    40201 gccagtgcaa tggcaggtgc agtgttacgc cctgccggtt cgagaataat gttctcggtg
    40261 agtttgttca gttgacgcag ctgttccgcg acaataaagc ggtgctgctc attgcaaatc
    40321 accaccgggc tttcgcactc cacgccgttc aggcggcaga tggtggtttg cagcatggtg
    40381 agatcgcctt tcaggcataa aaactgcttg gggtaaagta cgcgggaaag cggccataag
    40441 cggctaccgg agccacctgc catcacaact ggatagagtt tcgactgcgc cataattatc
    40501 cccgaatatc atttataaat tgacgtaaca cgttctcttt atcgagtgtg cgttcggcat
    40561 attcacgtgc caccgtgttg tgtttgggca gcaggagcgc ctgacggatc cccgccacca
    40621 gcgcctcgac cgattccggt tctacgcaaa ccgcaatgcc cggaaaggtt tcgcaaagct
    40681 gccccagttc tgtgtgggcc tctgcggtaa tcaccgcgtt accgcctacc gccagaatat
    40741 tggtcagttt cgacggcaat acggcatctg ccgcgccgcg tttttgcacc accagatggc
    40801 aatcgcccat cttcagcagt gcgggtaaag cgtcatacga ttgcagcggg aaaaattgca
    40861 tgttgcgcag tccacgctgc tgcgccattt tttccagccg cgctttgccg ccgccctgcc
    40921 cgacaatggc aaaaatcagc ggttcatcgc gcagacgatc ggcagcttca ataacgtttt
    40981 ccagcccctg cttttcacca atattgccgg agtaaagaat gatttttttg ttatccggca
    41041 ggtcaagctg gttacgaagg gcgtcaacat cggcatctgc aacatgctga aaacgggcaa
    41101 tttccgacca gttggggaag aagatgacgt tttccgccgc cacgcctttt tcgatggctt
    41161 tattcatcat cgaacgcgaa atcgtggaga cgttatcgac gttatgcagt ccgctacgtt
    41221 cgaacgccgt tgccagctgt gccactttgc cgcctttgcc ttttccggca aggcccagcc
    41281 ccagcatggc gtccacttcg taatcctgaa tatgcagcac ggtacgcgca ccagagagct
    41341 tcgccagcag gcgcattccc ggcgtgcaaa acagcgttgg cactacgccg ataatgcgat
    41401 ccggcttcca gcgacgttgc gccatcagtg gaaagaaact gctgacggca aaactgccga
    41461 gatgcaacaa gcgtttcagg gtgctcggct gttttggcac gtacagcggg cagcgccaca
    41521 ccgtggcggc cccctcttct cgtttgtagc gccaggcgga atagttctca cccacctgcc
    41581 attgcgggta gtaaggcggt gcggtaatga cccgcacctc atgaccttgt gccgccagcc
    41641 attccaccat ctcgccggtg tatttgccga tgccggttaa ctccggcgag tagttaatgc
    41701 cgtagaccag tattttcata atccgggtac tccggcacgc ttctcagcga gaaaataggc
    41761 gcggctgtta gcgtgaacat cgttactggc gagcagcgcg tccggcgtca gccagcggta
    41821 atcgtcatgc tgctcatccg gcattaacag ctcttcttcc gctactctga agcgaaaacc
    41881 gagcaccaca tagtgagtgg tgaaatccgt gccggagaag ttatcgtcat aaaagtgctg
    41941 ccagacaccg taaaactggc ctgctgttat cggcagacgc agccccagtt ccgccatcgt
    42001 cagccgctca aatgcggctt ccagcgtttc gtctttctgc acgcgccctc ccggcacaaa
    42061 ccagtaaccc tgcgccgggc ggttggttct tttgccaagc agaaactcgc cgcgactgtt
    42121 ctcgacaata aagtcgagag agacaagcgg tgtggagcgc actacagtgg caaagtcttc
    42181 ctgacgtaaa aacatcattc cccccgaaag cggtcttgat tctcaaggaa ccactggtaa
    42241 gtgctggcaa gccccgcttc cagtgagatt tcgtgatacc agccaagctg atgcaggcgc
    42301 gtcacatcca gcagtttgcg cggcgtacca tccggtttgc tggcatcaaa aaccacccga
    42361 cctttgtaac ccaccacttt ggcgatggtt tgcgccagct cgcggatagt gcagtcaacg
    42421 cccgtaccaa cgttaatgtg cgacagcatc ggctgggtgt tctccagcca gacttcatgc
    42481 gccagctcca tgacatgaat gctcgccgcc gccatgtcat cgacgtgcag gaattcacgc
    42541 atcggtgtac cgctgcccca taccaccacg tccggcgcat tctgtgccgt cgcctcgtgg
    42601 aagcgacgca gcaatgctgg gatcacatgc gagttactcg ggtggaagtt gtcatgcggg
    42661 ccatacaggt tggtcggcat gactgagcgg taatcgcgtc cgtactggcg gttgtatgat
    42721 tcgcacagtt tgatcccggc gattttggca atggcgtaag gctcgttggt cggctccagc
    42781 gtgccctgca ataactcgct ttctgccatc ggctgttttg ccagtttcgg gtagatacag
    42841 gacgatccaa gaaacagcag tttgttcacg tcgttctgat gcgcggcgtg aatgatgttg
    42901 ctctcaatca tcatgttctg gtagatgaaa tccgccggat aggtgttgtt ggcaacaatg
    42961 ccgcccactt tcgccgccgc cagatagacc tggtcaatgc gttcgctggc aaagaaatca
    43021 tgcaccgcgc ggctgtccag caggttcagc tcgtcgcggg tgcgtaatac cagttccaca
    43081 tcaccgcgct gttcgagctg ccgcctgatg gcagaaccga ccattccgcg atggccagcg
    43141 ataaaaatgc gttgtctact catgcttatg actccagcgc gatcgccacg tcgtagccgt
    43201 gagatttcag cagagagtgt tttttcgccg cttcgaggtc attagccacc atttcagaca
    43261 ccatctctct gagggtgatt tccggtttcc agcccagttt ttcgtgcgct ttggtcgggt
    43321 cgccgagcag cgtttcaact tcagccggac ggaagtaacg cggatcaacg gcgataatca
    43381 catcacccgg tttaacgccc ggcgcgtcat gcccggtgac ggaaaccaca atgcccttct
    43441 cttcaacgcc cgtgccttca aagcgcagtt tgatgcccag ctgtgctgcc gccatttcca
    43501 cgaactgacg cacggagtac tgaacgccgg tcgcgataac gaaatcttcc ggctgttcct
    43561 gttgcagcat catccactgc atttttacgt agtctttggc atggccccag tcacgcaggg
    43621 aatccatatt gccgaggtac aggcacgact ccagcccctg ggcgatattg gcgattgcgc
    43681 gggtgatttt gcgggtaacg aaggtttcgc cgcggcgcgg ggattcatgg ttgaagagaa
    43741 taccgttaca ggcgtacatg ccgtaggatt cgcggtagtt aacggtgatc cagtaggcgt
    43801 acagtttggc gacagcatac ggagagcgtg ggtagaacgg cgtggtttct ttctgcggaa
    43861 tttcctgcac cagaccatac agttcagagg tggaagcctg atagaaacgg gttttctttt
    43921 ccagaccgag gaagcggatc gcctcgagca ggcgcagcgt acccatcgca tcgacgtctg
    43981 cggtatattc cggtgactca aaagaaaccg caacgtggct cattgcgccc aggttgtaaa
    44041 cttcatccgg ctgcacttca cgcaaaatgc gtgtcaggtt ggaggtatca ctcaggtcgc
    44101 cataatgcag atggaatttc gggttgcagg tgtgcggatc ctgataaatg tgatccacgc
    44161 gctcggtgtt gaatgacgat gcacgacgct taataccatg cacctcgtaa cctttttcca
    44221 gcagaaactc tgccaggtaa gaaccgtctt gtccggttac accggtgatg agagcgactt
    44281 ttgacatgtc ttattcctct gtattttttg aatttattca gtttcaacgc gttcgcgtat
    44341 caccactgcg ggattccccc ggcaaaccac atttgccgga agcgttttaa aaacactgct
    44401 tcgtgcaccc acgacggtgc cgtcgccaat cgtgacgcca ggggcaacaa aaacatcggt
    44461 tgccagccag catttctcgc caatcacaat aggcgtagca ttaatggtga aatgttgact
    44521 tgcatggtcg tggctaccgg tgcataaata acttttttgc gatatcaccg aatgtgcgcc
    44581 aatggttatt tcaccgaggg tatataaatt gacgtcatcg ccgacccacg cgtaatcacc
    44641 taaggttaat ttccacggat aggtaatttt tactgacgga cgaataacta cgttttttcc
    44701 tatttttgcg ccgaataaac gtaataaaaa tgcccgccag cgatacaata cttgtggcga
    44761 ccaggcaaat attgttgcct gtactgccca ccataattgc actttaatag cgttgccgcc
    44821 ccggaaccct ttcggcaccg agaaaccgct taaatcttgc attggttctc cttatattca
    44881 gactttgtta tataaggctt tcgtctttga ggtagtacgt tggcgtaaat gccaggataa
    44941 ttcagcccaa aagccaggta catgtaatat ttgtcgttgg acttttttcg cgtcagcaca
    45001 caattccata ttattggtgg tagatacccc acccatggaa aattcagaca ccaggccatt
    45061 gagtttttta aatgcataac cggctttata cattttggct gccagcgcgt agtcggaaga
    45121 aactttatat tccaggtcat aacgccattt tttcaagccg gatacaggga aaaatatcgc
    45181 ctgatgactg gcgggcaggc tgtgataaat ataccagccc ggtttggcgc tacgtttaat
    45241 tttatgcccg tcgccaaaat ccagcagcgc atcgccggtg atcatcatgt tatctttttg
    45301 catttttaac ttacggacaa aatttgcggc atcctgatga aaaatatcgc ccgaattgag
    45361 aaacaacgcg aacttgcctt gtgccatcgt aatgcctttg ttcatggcgt cgtagatacc
    45421 gttatctggc tcgctgacaa agcgtaggtt atagatacca ttgagatttt ccagatactc
    45481 acgggtgccg tcattggaac cgccatcgac aacaatccat tcgaagctga tatcttccgc
    45541 ctgcgccaga tgcgccagcg aggcatgtgt tttgactatc ccttcgaggt tacgaaacgc
    45601 gacagtgatt atgctaagca acatgttctt attcttacct cgtaatattt aacgcttttc
    45661 gcaaaataaa cggacagacg attaaaaatg catattccgg gctaaatatc gaaccggtaa
    45721 aaaacagcga taccggagta aaaagatata attgcacgcg aaaattgcgg ttatcaccaa
    45781 aagcgttgat catcattttt atcactttcc ccatgtacca cagcgataaa aacactgcga
    45841 accaggaaaa ataaataatc agcagataca aaccattgtc tatggttttt ccgacatccg
    45901 caccgttaaa tattccgaat gatgcgacgt attcataaag tgagccaaat ctgactacac
    45961 cgtcaatatg ggtcaaagaa taaccgacca tcaccagcgg accgacaata cgataatacg
    46021 atgacgatcc ttccgtacct aaatcgccca gacgggtgga aatataagga aacgcgatta
    46081 ccacaccaac caggaataca gccagagaaa tcaatgccaa cggtaacttt ttcttaatcg
    46141 cctctttatt cagatattga aatgcccact ccagcaaata aaacaggata aaggtcataa
    46201 cccctgaaaa cgatccggat aatattatcc ctgcgagaat catagcatcg gttttaggcg
    46261 ttttgatacc aaactgtttg atgctgagcc aaattgagat taatgccaga gcgaaaaatg
    46321 ccggttcgaa ataaagtgct gtcgtgcgct tgccgccgaa tttaatgaaa ttcagtacat
    46381 agctgttgct gtaaatcaga tatttcgaaa tcgactccat aatactgctg ccaccggtga
    46441 ggataatttg cgccatctcc accaccgcca gcgccaccac cagcccgacc accagataaa
    46501 agaaacgtaa tatcttgcga tggttgtgtg gcgaaatcgt tttaaagcga atactccaca
    46561 ccatgccaat aatgatcaca atatagacaa acagcatggt tgatgtgacg tatttactgg
    46621 catccaacga ctgaccaaac agatagttga acgccgtgag tcccgcacca atccctaagg
    46681 caatcatcaa ttttttaacg ctgatgcgtt ctaaaaacag cagtaacaag acaggtaaaa
    46741 aagtgacgat agtgatgggg aaactttcac caagctgggc gattttgacg ttaaccagca
    46801 ggtagatcag cggcagcagc aggtagctac agattctgat aggagttgac atactcctcc
    46861 agcatctgtt gtccactgta ggcggcgcgg ctgcgttggc tgaactcagc cagcgtggta
    46921 ccaaatatcg cctgcgcgat ttccggtttg cttaactgaa ccagttgcag cacgtcttct
    46981 tcgctgacag tttttcctcc ggatttttgc agcacttccc gcgccgcatc gctatgggtg
    47041 gcgatcaccg gcacaccaat cgatagcgcc tcacacaaaa tcagcgggta gttatcgaca
    47101 cgagaactga acaccagcgc atccatctga ttgagcgcgc tcatcaactt gcgcttgtca
    47161 gtttcaaagc cgtgattaac cacgttgcca gcggtgaacg gcgagaactt accaaaggta
    47221 tgcagttcga ttttgtcgcc cagcgccatc atctcacgca ccagttgctg gttagttttg
    47281 ccgtcgtaac gcaggtcatg cgccaccacc gcgattttcg gcttgccctg ggtttcgcgc
    47341 accggaggca gatccgccag aatcgcttcg gttgccatat caatgccatt attgataatc
    47401 cggcaacgcc ctggaccgta caggctattg aaagcatcag ccacatgctg gctgggggaa
    47461 ataaactgac agcccagcgc cagcatctca cgaaataact ggcgtttgcc cgccaccagc
    47521 tggtgcgcgc gatcaatctt caccggcgga tagttattta aggtcgggca tttctggcaa
    47581 cccgttttcc agccttcgca accgtcggta aaggcgcagc gcccggttac actccagtga
    47641 tcgtgcagtg tccagaccac agtgacgtcc ggtttatggt ttttcacttt ttcgcaaaag
    47701 cgcaccacgc tcttaagatt tagccagtag ctgtgcagca catgaaaatg caggaccacc
    47761 ggacccggtg tgcgagtaat ggtgcgatat aactcattga aattgccaaa cagatcgcga
    47821 ttaaacagac gaaacagtgc aatgttcgcc atcgcggtca tccgcggcgt atgtttgatt
    47881 acctgcggat agttttgatg gctgacgctc tctttgccgc ctttgccgta gccgtagaca
    47941 aaatgtgacg ccagcccctg ttgcagcgca cgctggtgga gatctaacgc cacacctgcc
    48001 gctccgcctt ccgccagtcg cacattaaat tgcagaatat tcatttaatt accttcactc
    48061 gcgctttttc tcccaccacc agcgcgttgt ccgggacaga gtcgagcacc acgctgcccg
    48121 cgcccacggt gacgttgtta ccaagcgtga tatcaccaag aataatgacg ttggcaccga
    48181 gttcgacgcc gttgccaatg tgtggacatg ccatgttatc ggcaccacga ttgccgatag
    48241 tgacgccgtg gcgaatggta aaatcatccc ccgcaaccac gtttttattg atcactacgg
    48301 cgtaaccgtg atggatagta aagcggcggc caatggttgc ggctgcctgg atttcataac
    48361 cgaaaaagca ttcggtgata atgcgataca gcaccagcag cggtgccgcc cacagattgt
    48421 tgaggacgtt ctttttgcgc cacaccgaac aaaaatgagc aacacgatag gcaagaacca
    48481 tgcagcacgg gcgtaaactc cagctgttgg cgcgcagatc ttccagcatt tttagcgccc
    48541 ccgaatacca tcagccagac gtttgccgtt acgcaccgac agcagcgtca acaaggtgcg
    48601 ccaggtcatg cgtttattac ggatctggta gagggtaaac agctgatatt ttttgcttgc
    48661 acggtcaaat ttatctttgt gctttcggta aaagtggaag tacccggaga attttttcgg
    48721 tgacgaggtg atctgcattt caccgtgatt gatatgcagg atctgcgtcg cttcttccac
    48781 tttccacggt tcgccgtact ccaccaccat ccgcaggaag atgtcgtaat cctgtgctgc
    48841 tttcagttcg gtatcgaaca aacactcttt gaaacgccat gcccaagtaa agacctgatt
    48901 gccaatgata ttgcgtttat agaacaggcg gcgtgaatac ggcgatttgg gatatagcgg
    48961 caaacttgct ggttgggaat agacttcgcc ctggcaaacg tagtcgttag cgtacaaaaa
    49021 ggcgtgagtg accagttgct gtttatgggc gaggaagacg ctcagacggt tgggtgtcca
    49081 ttcgtcatcg tcatcaatcc cggtgatgta ttccccttgc gccagcataa tcgcctggtt
    49141 acgtaccgcg cacgccccgc tgttaatgtc gttgtgaatg taggtgatac gcggatcgtt
    49201 gagggcagtg acgtactgtt gcagttgttc ccaggaggtg gagcaatcat ccacgatgat
    49261 catctcccag ttgctgtagt cctggcgcag gaccgatttt atcgcccgaa tcgccagttg
    49321 ttggcggttc caggtcggca tatagattga aatcagcgga ttgtctttca taggttgttc
    49381 tcccggagtg tcgagatgtt ctgccggttt ataagcttgt ttacgggttc tgttgccgga
    49441 tgcggcgtga gcgccttatc cggcctacgg agctggtttg cttgccggat gcggcgtgaa
    49501 ggtaggtcgg ataagatgcg tcagcatcgc atccgacagc ggatgtcgtt atttcgcatc
    49561 cgacttatat tcgtattcgt aatagccata atcctgatac gcgctggcgc ggcggaagat
    49621 ggagttcaga atcacccctt tcaccggaat accattttgc tcaaagcggc tcagactggt
    49681 ttccacttct ttcaatgtgt tgaccgcata acgcgccacc attaacgtgg ttccaacatg
    49741 acgaccaaca attgccgcat cggtcactgc cagaatcggc ggcgtatcaa tcaacaccag
    49801 gtcatagttt ttactcgccc agttcaccag ttcggcaaag cgttcgctca tcaacagttc
    49861 agaaggattt ggcggcacct gaccgcgcgg gatcaggtca aatttggcaa tagaggtcgg
    49921 tttagcagcg gtagtaatat cgccctgacc aatcagaatt tccgacaggc cattaacgtt
    49981 attagtgccc agcagctcgt gggtgtagcc tttgcgcata tcgcagtcga tcaacaacac
    50041 ccgtttattg gtctggctga tcaccgccgc caggttggcg cagacaaagg ttttaccgat
    50101 tgacgggcta accccggtca tcatcaacac attgttctgt gcctgcatca tcgcgaagtg
    50161 caaactggta cgcagactgc ggatggcttc aatcgccaga tcggttggat tccccatcgc
    50221 cagtagctgg ctctgtttat agcgtttaat ccctttgatg gttttgacgc tatcgcgcgc
    50281 tttctgccat tccgaaagcg ggatgctggc atagacgctg ataccgtgtt cttccagcac
    50341 ctgcgggctt tcgatgccgc gattaaacaa cgagcgcagc agcacaccca cgatagaaag
    50401 catcaggccg aggataatcg ccccaaggat aatcagctct ttcttcggtt tcagtacacc
    50461 tggctgggtg attgccgggt caacaatgcg cacatcgccg acggtgctgg cctcggtgat
    50521 tttcagctcc tgctctttat tcagcagttg catatagacc tgctgaccag actcgacatc
    50581 gcgggtcaga cggacaatct cctgctgggt tttcggcatc gccgttacgc gaccgttaag
    50641 tttggctttt tcgtcttcca gcgcctgacg tttctccagc agcgtgcggt acgccgggtg
    50701 aactttggtg tacagcttgg agatttccgc ctctttaaag gtcagttcgt tcaactgggc
    50761 gtcgatgttc accatcgaat cgagcaccgc tttcgcttcc agcggcagat caacagaatc
    50821 tttatcctga cggaaggcat tcagtttgtt ttcggcaaca tcaaggcggc tacgtacttc
    50881 cggtaactgt tgcgcgagga aagcgaggct tttcgacgct tccgccgatt tgcgctcaat
    50941 attttgttcc tgatagttac gggcgatgct gttaagaatg tcgcggatct gttcgcgatc
    51001 ttcaccggta taagtcaggc tcagtacgcc tgcgtctttg ccgttctccg ttaccgtcag
    51061 gctgttttgc agttgattga tcatccccag cgtggagtat ttggtgacgg taaactcact
    51121 gcccgggcgg gcgtgaatgg cttcaaccat cagcgtgacg ccttcttttt tcagcatctg
    51181 gcccgcttgt ccacgggcgc taaagccgcc atcactgctc agggtgtagt ttttatcgtc
    51241 cagcacatta agcgtaaaca cctgatccgc catctctttc gggcggttaa aggtggtcac
    51301 tttcaccgtc tcgttctgac gtcccatcaa acgatcccag cccgcaccga aaatcgggaa
    51361 cgtgtttttg ctcaccgcaa tatcgaggtc gagatcgtcc accgttttac caagcaccag
    51421 acgcgaacga atcaactgga tctcggcgtc cgatgcaggc ggtttgttgg ctaatgccga
    51481 accaatgtcc tgcactaacg aattgccgct gttttgctcg atttgtacca gtgcgtcggc
    51541 actataaatc ggcgtggcga agaaggtgta aaccacggca cagagggcaa atacagcggt
    51601 gatgccaatc acccaccagc gcgcttcaat gacggtgccg accaggcgac caatatcgat
    51661 ttcatcactg cccgttaccg gagcggcatg ttgttttact ttttctgtca ttcttatacc
    51721 tgctctgcgt tcaatgcctg cgcccactgg cgggcagacc gttcaagtaa tgtgtacacc
    51781 gctgcaaacg tttcccggct tttgcgatac ggatcgggga tttcacattc gttatcccag
    51841 tgaccaaaca gcatcacttt gccgcgcatc tcaggtgcca tctcgcataa gcgttcgata
    51901 tggcgctttt ccatggtcaa aatcaggtcg tagttgcgac acagacggcg gctgatttgc
    51961 cgtgcacagt gaccttccag agacagttga tgttctgcgg cgatgctgat agcagtaggg
    52021 tcagcgccct taccgaccag cgcgccgagt ccagcggact ccactttcag ctccgggtga
    52081 taacgttgca gtaagcgttc cgccgtcggg gagcggcaaa tattgccgac acagacaact
    52141 aagatgttgt taaacatgac gattaccagt tatgaatgtc gctggctgta tccgtcatgt
    52201 aacggacacc gctaatagtt ggcagcaact gattgatcag acggttccag cgggaaaccg
    52261 gggcggtggt gacatacacc acgtcataag gttgcaggcg gaattctgtc gccatcacca
    52321 gcgacgtggc atcggacata tccagctggt agatattggc aatcttgccg ttacgcccgc
    52381 cctcgccttt cagcggacga atgacaaaga tgccgctggc gttggaggtg gtcatgtcga
    52441 taccttcagc attacccagg gcttcagtca gggtcatgcc gctaaagtcc attttcaggg
    52501 tgctctgttt cttcacttca cccatcacaa atactttcag atcatcatta cgcggcacgt
    52561 agagaatatc gccgggataa agcagtcggt tctgattgag gtcgccgttt tgcatcagca
    52621 cctgcaaaga aatgcgttct tcacgaccat tgtgtgttag caccacgttg cgccagtcag
    52681 cggtgtcggt caggccacct gcggcgttga tggcgtcgag aatggtcagt ggtacgttgg
    52741 tgatcgcctg ttgaccggat ttattcacct gacctgagat ataggtcttt tgtgagcgga
    52801 aggcggcgat attaacgtcc acctgcgggt cagcgatgta cgtcgctaag cgcccggtaa
    52861 tatcactgcg gatttcagcg agcgttttcc cgactacgtg aaccttgccg atatacgggt
    52921 aaaacatagt gccgtcaggc tgtacccagt tgccggtgtc gctggagctg cggtactgac
    52981 cagctggcgt ggtgagttcc gggtgatccc agacggtgac attaagaacg tcccccggcc
    53041 cgacgcgata ctggtaattc gcgatctcgc tttccagcgt catattgggg cgcgctacat
    53101 tcgggcgtgg gcgtaattgg tcaatcaggc gcggggtcag cggataaaca ttcaccattt
    53161 tgtcgagatc gaaatcagcg tcctgctgtt tgatgacgtc tttgcccatc gtcgacatat
    53221 tgctgcccgg aagtactgtg caaccgctta tcaaggttac tgacaccaat aatggcatca
    53281 atttcatttt ggatttcatc attgtttatt tatcactttg gcagagtaat tatcctgtgc
    53341 actattaata gcaatgtcgc catgcacatt taccttgcag ttaattgaat acaaatttaa
    53401 ctggcatcag tcctaaaaaa attgatttca tccgcaggct attgacagaa taattcagac
    53461 tggtctttca ggcatccaga cacgctaccg cccctggctt tttagccacc aatacactga
    53521 tttagcttaa ttttttaaac cctctctgca tacaatcgtt gatgagaaag ggttattgcg
    53581 gaaattaact tccgaatata aggtgacatt atggtaattg aatattggct ctccaataat
    53641 gcaggaggaa gtgttacagc taacggaata gcaggcaagg taacaattcg gcaattggct
    53701 atttttaaga attatattaa gtgtcattca atatggtttt taggagtttc tttaggttga
    53761 caatatttaa tattgcgcct ccgcatgcga tatttcttaa ataatgtttt attattacca
    53821 cttttaattc agggataatg tgaggttatt accctcaaat aatatgagat aaatagtgct
    53881 gcaacattgc atttttgccc cgatttatcc atgatcgaat tgtgacattt gtcatacaac
    53941 gaataggttt tgtacttact atggaatgga ttgccgatcc gtctatctgg gccgggttaa
    54001 tcacgctgat tgtgatcgaa ctggtcctcg gcattgataa cctggtcttt attgccatcc
    54061 tcgccgaaaa actaccgccg aagcagcgcg accgcgcacg ggttaccggg ctgttgctgg
    54121 cgatgttaat gcgcctgtta ctgctggcgt caatctcctg gctggtcacc ctgacgcaac
    54181 cgctgttcag cttccgctcg tttaccttta gcgcccgcga cttaatcatg ctgtttggtg
    54241 gtttcttcct gttgttcaaa gccacgatgg agctgaacga acggctggaa gggaaagaca
    54301 gcaataatcc cacacaacgc aaaggtgcga agttctgggg ggtggtgaca caaattgtgg
    54361 tactggacgc catcttctca ctcgactcag tgattaccgc cgtcgggatg gtcgaccatt
    54421 tactggtcat gatggccgcc gtggttatcg ctatcagcct gatgttgatg gccagcaagc
    54481 cgttaacgca atttgttaac agtcacccga ccatcgttat tctctgctta agcttcctgt
    54541 tgatgattgg ctttagcctg gtggcagaag gtttcggctt cgtcattccg aaaggctacc
    54601 tgtacgctgc cattggtttc tcggtaatga tcgaggcgct caatcagttg gctatcttta
    54661 accggcgacg ttttctttcc gctaaccaga cgctacgcca gcggactacc gaagcggtaa
    54721 tgcgcctgct tagcgggcaa aaagaagatg cggaactgga cgccgaaacc gcgtccatgc
    54781 tggtggatca tggtaaccag cagatcttta atccgcagga acggcggatg attgagcggg
    54841 tacttaatct taaccagcgt actgtcagca gcattatgac gtcgcgccac gatattgagc
    54901 atatcgatct caacgcgccg gaagacgaga tccgccagtt gctggagcga aatcagcata
    54961 cgcggctggt ggttaccgac ggtgatgacg cagaagattt gctcggtgtt gttcacgtta
    55021 tcgacctgct acaacagtca ctgcgtggcg aaccgctcaa cctgcgggtg ttgattcgcc
    55081 agccgctagt gttcccggaa accttgccgt tgttacctgc cctggagcag ttccgtaatg
    55141 cccgcacaca ctttgctttt gtggtggatg agtttggctc ggtggaaggg attgtgacat
    55201 taagtgacgt cactgaaacc attgccggta acttaccgaa cgaagtggaa gagatcgacg
    55261 cccgccatga tattcagaag aatgcggacg gttcctggac ggcgaatggt catatgccgc
    55321 tggaagatct ggtgcaatat gtgccgctgc cgctggatga aaaacgtgaa tatcacacca
    55381 ttgccgggct gttgatggaa tatttacagc gtattccaaa acctggcgaa gaagttcagg
    55441 tgggggatta tttgcttaaa acgttgcagg tggaaagcca tcgcgtgcag aaggtgcaga
    55501 ttattccgct gcataaggat ggcgagttgg agtacgaggt gtgatggtat cggtcatttt
    55561 acccaatagc cgaaaggaat aagatgaggg aaccgcgcca gcggcgattt accgccggga
    55621 gcccgggttg ccagggtggt ggcgattgag cccccctggc acgttcaccg gcttgagcgt
    55681 tccatagtag cgaggaacat caagtgaacg gaacagcctt cgatcttaca tattcagaat
    55741 ataatgatgc cgccacgaac gcctgatgcg acgctttacg cgtcttatca ggcctacagg
    55801 acaggtcacc aggtaaccta catcttctcc agcaacttct tcacatcttt gccattgcgg
    55861 gaatctttat tccgctcggc ccagtcattc agacgacgtt tcgcttcgtc ctgtagatgt
    55921 ttgcgcagta actgatccac ttgcagactg taattgagtt gctgccagtt gccataaacc
    55981 cgcagcggta ctggcgtttc tttaaggaaa tcaatcagtt tgctttcccc gttccagcca
    56041 cccacgaccc gaatatcaaa ctgggtgtcg caggtttgct ccgccagatt caacgtacca
    56101 gccccggaaa gcgccagcac aggcgattga ccttgcatgt cgtttaacgt cacgacgcca
    56161 tccttcaacg tcaaatcggt ggtaaagcgg tcaagacgcg ttacgttatc gaagttttca
    56221 gcggccttca catcaccacc attacgttct accgcttgct gaatcatctg ctggaagttc
    56281 atcccttcca tgcgcgtgtc ggtcatttcg acatgtgcct gtccttgcca gttgtggcgg
    56341 aatgcgtcgg catctatgtc agcaccggag aaatcaccag ccagtgacat ctttccggtc
    56401 aacgaaatcg gatagttaaa cgccttcaga atggtgccaa tctcaacgtt ttccagccgt
    56461 ggctggaagt ttatccgcgg atttattgat gtcgcgtcca gcgtgcccgg cagtgaaacc
    56521 tgtccaccgt taagcttgcc ctgcagttga gtaatttcca gcaaacccga cttgttggtc
    56581 atttgcgtgg caacatctgt aaaattcatt ccgcgccagc gcacgttact ggcctgcaac
    56641 aaaatatcag ccgtaaagcc ttgcagtccc tgatatgccg gttcatcaat acgcgaagaa
    56701 atgaccgggc gcggcaacgt tgattggctc tgcccctgct gcgcggcacc gttttcacca
    56761 ttcgctgttt cattaagcgg gatgaggttg tcaagattca gttgcgggaa ttgcagtctc
    56821 agctgccatt ccggtttctc tgtcagcgtg acctgtgctt gcccgctcag cgtactgtca
    56881 ttggcggtca aactaatttg gttaaatgaa aggcgtttat gtgactcctg ccactgggcc
    56941 tggaaactcc cctgcccatg aataccttgt tttggtaaat ctgcaccctg caactgccag
    57001 ttaatttgtt caatagccgc cgttaaatca tgcggataat cagaagcatc taccgtaccg
    57061 ttaagggata tcgtgagatc gcgctgatcg cgattaaccc gcccggagaa ctcaaatgaa
    57121 ccacgatgtt ggggatcttg ttccatttgc aggcgaatat tgcggattgt cacctgctcg
    57181 tcatcttcat gctggaacac cagcacgctg tccgccacct taagactgga tatatcaaac
    57241 gaccatccgc gatcgtctga cagatccggc aaggtattgt cgcgcggtgc aaccggagcg
    57301 tcttcactgc gcaccacttc cgtctgcggc gtcagttgga tcactgcccc ttttagcatc
    57361 acctgcttaa cgctcagttg atgactcagt agtggtaaaa gcgccacgtc cagacgcatg
    57421 ttgtcggcgc gaaccagtgg ctggctcgcg ccctgggcgg tgagagacat tcgcccggag
    57481 aggatactaa gctgcggcca gacgtgccaa cgcagtggcc cgtcgagctg caattgataa
    57541 ccgctacgtg cagcaacttg cttgaccata tagttgcgga aatcattcgg attcaccagc
    57601 aacactaacg cagataaccc ggccaccagc acgaccagga gtatcatcag cgtcgtcaga
    57661 aatcgtctca tggtatcctc aatgggcctg aattagtctt tatcgattcg gctggctacc
    57721 gcgccctgct ggttgcgata tttcgcatct tcacggcggt tgtaaggtcg cgccgccggg
    57781 ccggaaagcg gctcaaagct cagcgcacca attaacatgc ccggacgcag cgccagcggc
    57841 agcttaccgg agttgtagaa ctccagcaca atgcaaccag accagcccgg atcgatacgg
    57901 tgcgcggtga cgtgcaccat cagccccaga cgcgccaaag aggaacgccc gtccagccag
    57961 cccaccagat cggctggcag cgtcaccgac tccagcgtca ccgccagcgc cagttctcct
    58021 gggtgaagat agaacgcctc gccctcgtcg agaacgatct catcgctcat cacgcggtca
    58081 agcgcggcgc tcacttcatc tttgggaccg ctcagatcga taaacgctgc cgtgtgacca
    58141 cggaaggtac gaaatttatt gcccaggcgt acatccaccg tcgcgccgtt aatacgctcc
    58201 actggcggac gtgggttgat cgacaaacgg ccttcatcaa gccaggcttc aatatctcgg
    58261 tcacacagac gcatggcatt ttctcctttc gcgcatcact cccttaacgc caattacgtc
    58321 aagggcatac caggttatca ctgaacggta cacaatttat caagcttatt caaagaactg
    58381 acttattttc gctttcaata tatcgatcgc gatgcggttt ttcccgccgc gcggcacgat
    58441 aatgtccgca tattgtttag aaggctcaat gaattgcagg aacatcgggc gcacggtttt
    58501 ttgatattgc gccatcacgg aatccattga acgcccacgc tcgttaacgt cacgcttgat
    58561 gcggcgcatc aggcagatat ccagcggggt atcaacgaaa atggagaagt taagttcgtc
    58621 acgcaaacgc gcatccgtca gcaacaaaat gccttcgaga atgatgacct tcttcggctc
    58681 aaccgtcacc gtttctttca tacgcgtatg ttcaacatag ctgtaaaccg gcaggtcaat
    58741 tgccgagccg cgtttcaacg cttgtaaatg ctcaagcagc aggttgtgat ccatcgcgct
    58801 gggatggtcg tagttggtct taacgcgttc ttccatcgac agatggcttt gatctttgta
    58861 atagcagtct tcgggaatta cgccgatgtg ttcatcaccg acttgctcac gtaattcacg
    58921 ataaagggta ctggcaataa gactcttgcc ggaagccgat gcgccagcga taccgataat
    58981 gacgcactga tgagactgat cagtcatata tttagcgacc tgattaacct ggatgttagg
    59041 aagggggcga cgaagcgcca aacgcggcaa ttatagggat ttcatccgcc tgataccagt
    59101 cgaatagcgt tgccgcgcgc tcagagttaa ttgttgacaa agaattcccg gtggcaaatt
    59161 acgttgatca gttttatgta aggtaaaaaa tgttatacgc agttgcgcaa attatccgcc
    59221 tttacgtcac tttatgagca attcacatat aaaatgtaaa acttttgtac tagcataaac
    59281 acagaaacga atactggcga cctggtcttg cggataaagc ggtaatgagc aaacaatcac
    59341 agcatgtatt aattgccctg ccccacccac tgcttcacct ggtcagttta ggtttagtct
    59401 cgtttatctt tacccttttc tcgcttgagc tttcgcagtt tggcacccaa ctcgccccac
    59461 tgtggttccc gacgtccatc atgatggtgg cgttttatcg ccatgccggg cgcatgtggc
    59521 cgggaattgc gctgagctgc tcgctgggaa atatcgccgc atccatcctg cttttttcca
    59581 ccagctcgct gaacatgacc tggacgacca tcaatattgt tgaagccgtg gtcggggcag
    59641 tgctgctacg taaattgctg ccgtggtata accccttgca aaatctggct gactggctgc
    59701 gtctggcatt cggcagcgcc attgttccgc ctctgttagg gggtgttctg gttgtcctgc
    59761 tgacgcccgg agacgatcct ctcagggcat ttttgatatg ggtactgtca gaatccatcg
    59821 gcgctctggt actggtgccg ctgggattgt tatttaagcc acactatctg ctgcgccatc
    59881 gcaacccacg gttacttttt gagtcactgc tcacattagc catcacgctg acgttaagct
    59941 ggctttctat gttgtacctg ccgtggcctt ttactttcat tattgtgctg ttgatgtgga
    60001 gcgccgtgcg cctgccacga atggaagcct ttttgatctt ccttaccacg gtgatgatgg
    60061 tgtcgctgat gatggccgcg gatccctccc tgcttgctac gccgcgtacg tacctgatga
    60121 gccatatgcc gtggctactg tttttgctga tcctgctgcc cgccaacatc atgaccatgg
    60181 tgatgtatgc ctttcgtgcg gaacgcaaac acatttccga aagcgaaacc cgctttcgga
    60241 acgcgatgga atattccgct atcggtatgg cgttagtggg caccgaggga caatggctgc
    60301 aaaccaacaa agcgctctgc cagtttctcg ggtacagtca ggaagagctg cgcggactca
    60361 cctttcagca actgacctgg ccggaggatc tcaataaaga tctccaacag gttgaaaagc
    60421 tgataagcgg tgaaataaac acctattcaa tggaaaaacg ctactacaac cgtaatggcg
    60481 atgttgtctg ggcgttgctt gccgtctcac tggtgcgcca cacggatggc acgccgctct
    60541 attttatcgc tcagattgaa gacattaacg agctaaaacg caccgaacag gtgaatcagc
    60601 aactgatgga gcgcatcacg ctggctaacg aagcgggcgg gattggcatc tgggagtggg
    60661 agctgaagcc gaatattttt cgagctgtat gaaattcctc cgcatatcaa accgaactgg
    60721 caggtgtggt acgagtgcgt gctgccggaa gatcgccagc atgccgaaaa agtgattcgt
    60781 gattcgttgc aatcacgctc gccctttaag ctggaatttc gcattaccgt aaaagacggt
    60841 attcgccata tccgcgccct cgccaaccgg gtactgaata aagaaggcga agtcgaacgc
    60901 ctgctcggca ttaatatgga tatgaccgag gttaaacagc ttaacgaggc attgtttcag
    60961 gaaaaagagc gcctgcacat tacgctggat tccatcggtg aagccgtggt ctgtattgat
    61021 atggcgatga aaattacctt tatgaatcca gtggcggaga agatgagcgg ctggacgcag
    61081 gaagaagcat taggtgttcc gctcctgacg gtgttgcata ttacttttgg cgacaacgga
    61141 ccattaatgg agaacattta cagtgccgac acctcacgtt ccgcgattga acaagatgtg
    61201 gtgttgcact gccggaacgg cggcagttac gacgtgcatt acagtattac gccgttaagt
    61261 actctggacg gcagcaatat aggctcggta ctggtgattc aggacgtcac cgaatcacgc
    61321 aaaatgctgc gccagctgag ctacagcgcc tcccatgatg cactgacgca tctcgccaat
    61381 cgcgccagtt ttgagaagca actgcgtatc ctgctgcaaa cggtaaacag tacacatcag
    61441 cgacatgccc tggtgtttat cgatcttgat cgctttaaag cggtgaatga cagcgccggg
    61501 catgcggcgg gtgacgcttt actgcgcgaa ctggcgtcgt tgatgctgag tatgctgcgc
    61561 tccagcgacg tgctggcgcg actcggtggt gatgaatttg gtctactgtt gccagactgt
    61621 aatatcgaaa gtgcgcgttt tatcgctaca cgcattatca gtgccgtgaa tgattatcac
    61681 tttatatggg aaggccgtgt gcatcgggta ggtgccagtg ccgggattac cttgattgat
    61741 gacaacaatc atcaggcggc agaagtgatg tcgcaggctg atatcgcctg ttatgcctcc
    61801 aaaaatggtg gacggggccg ggtgacggtt tacgaaccac agcaagctgc cgcacatagc
    61861 gaacgggcgg cgatgtcgct tgatgaacag tggcggatga ttaaagagaa tcagttgatg
    61921 atgatcgccc acggtgtcgc ttcgccgcgg atcccggaag cgcgtaattt gtggctgatt
    61981 tcacttaagc tctggagttg cgaaggcgag attattgatg aacaaaaatt tcgtcgtagc
    62041 ttcagcgatc cggcacttag ccatgctctt gaccgacggg tattccacga atttttccag
    62101 caggccgcaa aagcggttgc cagtaaaggc ataagcatcg ccctccccct ttccgttgcc
    62161 ggtttgagta gcgccacgct ggtgaatgat ctgcttgagc agctgggaaa tagccctcta
    62221 ccaccacggt tattacatct gattattccg gctgaagcga ttttagatca cgcagaaagc
    62281 gtgcaaaaac tgcggctggt gggatgtcgg atagtgctca gccaggtggg ccgcgatctg
    62341 caaatcttca actcgctgaa agcgaatatg gcagattacc tgctacttga tggtgagtta
    62401 tgcgccaacg tgcagggtaa tttgatggat gagatgctga ttacgattat tcaggggcac
    62461 gctcagcgac tcgggatgaa aaccatcgcc gggccagtcg ttttaccctt agtgatggat
    62521 acgctttctg gcatcggcgt cgatctgatt tatggtgatg tgattgccga tgcccaaccg
    62581 ctggatttgc tggtgaatag cagttatttc gcgattaact gagagagcgt ttgcccattg
    62641 cctgatgcga cgtatcaggc ctacaattcg tccgttccgt ctggttgcca gccttccgta
    62701 taccagatat gcaacagcgc ataagaacgc caaggcttcc agcgctcggc ataacggcgg
    62761 atttgtgccg gtgtcatccc cggaaatcgc tgtttaatca gataatcatc cggcagaaaa
    62821 acatctttcg cctgccagcc acgcaaagcg aaataattcg ccgtccagcg cccgataccc
    62881 ggaaaagttt gcagcgtttt catcgcctgc tccacatcgc ccggaattgt cattggtaag
    62941 ctgccctcca gcgccgcatt tgccagatga atcagtgcct ctgcccgttt caacggcatg
    63001 cctaacgctt ttaatgcctg cgggtcggct gctgccagcc gctgaggcgt ggggaagcag
    63061 atatactccg gaaaatcatc cagccgttcg ccataaagct gtacaacttt ggcagtcaat
    63121 tttgccgcca tcgccacgct caccagttgg cctaaaatcg cccgcacacc ctgctcaaaa
    63181 gcatcaatac agccgggtaa acgcaatccg ggccgcgccg cgcctaactt gcccaacgca
    63241 ccgttaacaa tctgcgggtt acattgcaga tcaaacaggc ggctcatttt cgccagacac
    63301 tcagcggcaa cgggttctaa acctgcactt aaatttatgt gcagagtatg gcgggctata
    63361 tccggaatag cagtcaccac gccgcgatat tcgcccaccg ccagactacg ggcataataa
    63421 tcgtcagcga ccgtttccac accactcact gcacgggcgg cgagaaatcc caacatccac
    63481 gaccagtcat acggcggctg ccagttcagg gtatacatcg catctcctta ttcatccgct
    63541 ttcagcataa acgttattca gacgctacgc tttgctttca tattccggtt gtcgcgacgg
    63601 caacatttcg ctaaagtcac gccccttctt caccggcatg gggattattt cgtgtttatt
    63661 ggttttgatt acggtacagc aaactgttca gtggcggtca tgcgtgacgg taaaccgcac
    63721 ttgctaaaaa tggaaaacga cagcacgctg ctgccttcaa tgctttgcgc gccaacgcgt
    63781 gaagcggtaa gcgaatggct gtaccgccat catgacgttc cggcagacga cgatgaaacg
    63841 caggcgttgt tacgacgggc gattcgttat aaccgcgaag aagatatcga tgttacagcg
    63901 aaaagcgtgc agttcggtct ttcctcactg gcacagtaca ttgatgatcc agaagaagtg
    63961 tggtttgtga aatcaccaaa atcgttcctc ggtgccagcg gcttaaaacc gcagcaggta
    64021 gcgctgtttg aggatctggt ctgcgcaatg atgttgcaca ttcgccagca ggcgcaggcg
    64081 cagctgccag aagcgattac tcaggcggtg attggtcgcc cgatcaactt ccaggggctg
    64141 ggcggcgatg aagcaaacgc ccaggcgcaa ggaattctgg aacgcgcggc gaagcgtgcc
    64201 ggattcaggg acgtggtatt ccagtatgag ccggtcgcgg ctgggctgga ttacgaagcc
    64261 accttgcagg aagaaaaacg ggtgctggtg gtggatatcg gtggtggtac gactgactgt
    64321 tcattgctgc tgatgggacc gcagtggcgt tcgcgtctcg atcgtgaagc cagcctgctg
    64381 ggtcacagtg gttgtcgtat tggcggtaac gatctggata tcgccctggc gtttaaaaac
    64441 ctgatgccac tgctgggtat gggtggcgaa accgaaaaag gcatcgccct gccgatcctg
    64501 ccgtggtgga atgcggttgc catcaacgac gtacctgcgc agagtgattt ctacagtagt
    64561 gccaacggtc gtctgcttaa cgatctggta cgcgatgccc gcgaaccgga aaaagtggcc
    64621 ctgttacaga aagtctggcg tcagcgttta agctatcgcc tggtacgcag cgcagaagag
    64681 agcaaaatcg ccctttcaaa cgctgcggaa acccgcgcct cactgccgtt tatcagcgat
    64741 gaactggcta cgctgattag ccagcaaggg ctggaaagcg ccctcagcca gccactggcg
    64801 cggattctgg aacaggtgca actggcgctg gataacgccc aggaaaaacc ggacgttata
    64861 tacctgaccg gcggtagcgc ccgttcgccg ctgattaaaa aggctctggc agaacagttg
    64921 ccgggcattt cgattgcagg cggcgatgac tttggctccg tcaccgccgg gctggcacgc
    64981 tgggcggaag tggtatttcg ttaaaagaaa atggctcagc agcggcttaa atctgcctgc
    65041 gcctgagcca gtttttctgc cgcctgacgt aacggttcca tcaacggcat ggtccgtgct
    65101 ggagcataaa ggcggaatcg ctgcaactct gtcgcgccga cagtcaacgc cgattccagc
    65161 cgatgtcgtt tggcggccat taccgcctgt ctgtctgctg gcgttaccgc ttcgttcggc
    65221 ctgaacacaa aacggcggtc acagctcgct ttccagtcga taaccgcctg ggtcagatgg
    65281 tcgccaaacc ctttaacttg cttaacgcca cgacgggtaa catccgctgc tgtttcaata
    65341 ccaaaagacc gtaacgccgc tttacgcgca gggccaacgc cgggaataga ggcaaaaaat
    65401 ccctccagaa acttctgctt ctgccgttcc cttgcggtgt cataaagtgc tgccagagcg
    65461 cgtttctcct cttccggtaa cccgagaatt tcgtccttca ttttttcgag catcgcccgt
    65521 ttggcgataa aaccttccag cccgcccaac tgttggatct ggctgactaa atgctcatag
    65581 tccattttcg cgcgattaaa tgcctcacgg cgttgctgga tttctgcttt gtacgctttg
    65641 cttgtcagac tgccaataat ccagatagcc gacagcacag gaaccaaaat aatataacgc
    65701 ggttctgcct gaaggccgca aagcaacagc gataacgctg acagtgcgat ctcaatcaga
    65761 atgatgtatt cgcgccgtaa caggcctaaa ggaagcggcc tgccagtcgg ttggaaatga
    65821 tcgggtaatg gcaattgcaa tgctggcggt gctactgacg ccatcaccat cgcccagact
    65881 ttcgccagca caaaatcacc gctggtggta atgacctctt caccgagatc aacaaaatag
    65941 ataacgcctt gattatccag cgtacaccac gggcagtcgg tcaaatgagc gggataaaca
    66001 tgcattgccg aaacgggaca tttctttaac tgttggcgca gagaatcaag tgccgctacc
    66061 cacgctttag ccgtcggacg cccggttgcc acgccacttt ccgtgaatgc ctgctgaaac
    66121 atggcttcaa catcactcgg taacatcgat agcggaatcg atcgtggcgg cggttttaaa
    66181 ccacgtcgct gattatctga cgcgtaggca taacggaaat gggtaatatc cgtctccagc
    66241 gcattacccg catcagagat aagcggcaca ccagaataag gatgccggcc accaaacaag
    66301 acgtgaaaaa tcagcaacgc aaggccaaaa ttatcgtgat tttctgtgcg ttcaaagccg
    66361 acaaatgacg acaaggtttg tagctctggc ggcgtaaaat gcgacacgcc gacttcgcat
    66421 aaatgcagtg tgccattgac gttaatctga aaggagtcgc tatcaatcag taccactttg
    66481 ctgtcgcgac ctaccataaa actgttctgg tttacgtcac ccacgacgtg cccgtgctcg
    66541 tgaaccgtag caaaagatga agcaatattg cgcgcaacat agagtagaaa atcccacgca
    66601 caatgagggt aactctggcg acgatgtgcc gggctataga tcatatgaat cggttcttta
    66661 ccagaaactt ttggcatcat aaaaccgata acttttccgc ctcgtccacc gtgaagcgtt
    66721 gcctgcggcc aggcgacata attcaacaac tgcgcgtcag ctgtcgcagc cataaaggca
    66781 agtttgtcct gttttgaggc gggtggcggc gtgtgataaa tcttggcgac gctatcgaca
    66841 aactcctcga tatcataaac cgcgccttca ccgcctttgc ccagttcacg gcctggcgta
    66901 acgcactcac cagtagcagt atataaagtg ggtttcatgg taaccacagc gccagtgcca
    66961 acgttttatc atcatccgta cgctcgttta ccgccgggct ggacaaaaac tgctttaaca
    67021 attcaggtaa taaatcgagt tgttcctgcg ttactgacgc cagtccattg aaaaacgggg
    67081 taaagaaagg cacatgagga gaattatcca gcatatttaa cgccagccgc tgaataccat
    67141 ccgtaaatgc tgcaacttta tgcgcacgcc cagtgctggt gaaagtttcc agtctggaaa
    67201 cggcatcttc gtcggtaatg aagtgcgtca tgttggcata ttcacccacc atcggcgtga
    67261 gaggcaattg cagaccgtga cccaaatcta ccaccacgcc gccatcgcca atctgcataa
    67321 tcaaggtgcc gtcaggcgat gaaatcaatc ccagaaacgt gcaggcaaaa tcgcgaactg
    67381 ctaatgcttt ggcttctgcc tcggcaaaaa gtcgttgacg aatagtcagt accatatttg
    67441 tggcgaggac atcattaagc cccaattcac cgtcctgtac tttttgcacc ataaacgcca
    67501 tcgcttcatt gacggcgagc gtcgcgcctt ctcctccctg cgaaacgcta cctgcgccat
    67561 cagcaaggaa catcaccagt aatggttgct ggtcgtttaa ccagacaacc tgcatctggc
    67621 aggcatcctg acaaggcaaa tcagcactaa tgtgcgatgt tccaacagcg gatgcataaa
    67681 ccagacgcca gctcacactg acgtccagcc ttttggcgct tccagcacaa cttccgttcc
    67741 cggcgtggag cgggaaaccg aacgcagcga actggataac cagctaaaca gttcacggaa
    67801 ttgtaatccc tgcagtggca aaggctgacg aacgctgatt tgtgccagag tcttcatatc
    67861 cgccccctga acaccgatgg aaaagaaggc aaacttctta tcttcttccc cctgaaacac
    67921 tttgttggcg gcagcctgcc actcatcggt tggagcgcca tcggtgatca ggaaaatcca
    67981 cgggcgataa tacgaaatac catttgcgcg gtactcacgt ttcctctctt caaccatatc
    68041 tagggctttg gtaatggcgg cccccatagg cgtatccccc tgggcaaaca ggatgggcgg
    68101 gaaaaagtta gcggcgctgg taaagggttg ttccacatgc accgggccga acgtcacaat
    68161 gccgagttcc actcttttta aagccagcgg atcagcaagc agttcatcac gaaaggtaac
    68221 caatccggcg ttaagttcat taataggtct gccgctcatc gagccagaaa catccagcag
    68281 caaaatgcag gggcaacgtg gttccgggtt actggcaaaa tcgctggtgg caaacgtgat
    68341 ttgttcgctc ataagaaatc ctttcttaga gaattatcga ggtccggtat cataccgatt
    68401 gcaataatga aataagagca aacgaagaaa ctttcagaat taggcccgtc ggcgcagaaa
    68461 attttgctat tcgcctcgca agaacggaga gccgtcgatt gacactaagg gcggagtgac
    68521 ataatttcag gagtgagggt tagggagagg tttccccctc cccctggtgt tcttagtaag
    68581 cctggaagct aatcactaag agtatcacca gtatgatgac gtgcttcatc ataacccttt
    68641 ccttattaaa agccctcttc tccgggagag gctttcccgt ttcagcgtcc cgctgaaatc
    68701 atcggcttac ctcctttcgc cctgaatgca gtctatcgct aacgcgtgaa taaaatagtt
    68761 tcctctgtga ttattgcgta acgactcgca aagaatattt gctggcagga tcgcagacta
    68821 caaagcctac ggattgacaa tcttatcgtg aaggcatact ttcaggagtg agggtagagc
    68881 ggggtttccc ccgccctggt agtcttagta agcggggaag cttatgacta agagcaccac
    68941 gatgatgagt agcttcatca tgaccctttc cttatttaag gccccttcct cgggaggggc
    69001 tttcccgttt cagcgtcccg ctgaaatcgt cggcttacct cctttcgccc tgtatgcagt
    69061 ctatcgctga cttgcggata aaatagtttc cagtgtgatt attgcgtaac gtctcgcaaa
    69121 gaatatttgc tggcaggatc gcagactgca aagcctgcag attgacaatc ttatcgtgaa
    69181 ggcatacttt caggagtgag ggtagagcgg ggtttccccc gccctggtag tcttagtaag
    69241 ctggccagct aatgactaag agcaccacga tgatgagtag cttcatcatg accctttcct
    69301 tatttatggc cccttcctcg ggaggggctt tcccgtttca gcgtcccgct gaaatcggcg
    69361 gcttacctcc tttcgccatg caagcagtct atccctaacg cgtagataaa atagtttcct
    69421 gtgttattac tggatgcgtg ctcgcaaatg tgcccgtcat tcagacaatt cccgacagtg
    69481 tttcataatt cctccatttt tctcccttat tggctggcta cactagtatc attccgcgaa
    69541 acgtttcagg aagagaaact cttaacgatg aaaggcagtt ataaatcccg ttgggtaatc
    69601 gtaatcgtgg tggttatcgc cgccatcgcc gcattctggt tctggcaagg ccgcaatgac
    69661 tcccggagtg cagccccagg ggcgacgaaa caagcgcagc aatcgccagc gggtggtcgc
    69721 cgtggtatgc gttccggccc attagccccg gttcaggcgg cgaccgccgt agaacaggca
    69781 gttccgcgtt acctcaccgg gcttggcacc attatcgccg ctaatactgt tacggtgcgc
    69841 agccgcgtgg acggtcaact gatggcgtta catttccagg aaggccagca ggtcaaagca
    69901 ggcgatttac tggcagaaat tgaccccagc cagttcaaag ttgcattagc acaaacccag
    69961 ggccaactgg caaaagataa agccacgctt gctaacgccc gccgtgatct ggcgcgttat
    70021 cagcaactgg caaaaaccaa tctcgtctcc cgtcaggagc tggatgccca acaggcgctg
    70081 gtcagtgaaa ccgaaggcac cattaaggct gatgaagcaa gcgtcgccag cgcgcagttg
    70141 caactcgact ggagccgcat caccgcacca gtcgatggtc gcgttggtct caagcaggtt
    70201 gatgttggta accaaatctc cagtggtgat accaccggaa ttgtggtgat cacccagacg
    70261 catcctatcg atttagtctt taccctgccg gaaagcgata tcgctactgt agtgcaggcg
    70321 caaaaagccg gaaaaccgct ggtggtagaa gcctgggatc gcaccaattc gaagaaatta
    70381 agtgaaggca cgctgttaag cctcgataac caaatcgatg ccacaaccgg tatgattaaa
    70441 gtgaaagcac gctttaataa tcagaatgat gtgctgtttc ccaatcagtt tgttaacgcg
    70501 cgcatgttag tcgacaccga acaaaacgcc gtagtgatcc caacagccgc cctgcaaatg
    70561 ggcaatgaag gccattttgt ctgggtgctg aatagcgaaa acaaggtcag caaacatctg
    70621 gtgacgccgg gcattcagga cagtcagaaa gtggtgatcc gtgcaggtat ttctgcgggc
    70681 gatcgcgtgg tgacagacgg cattgatcgc ctgaccgaag gggcgaaagt ggaagtggtg
    70741 gaagcccaga gcgccaccac tccggaagag aaagccacca gccgcgaata cgcgaaaaaa
    70801 ggagcacgct cctgatgcag gtgttacccc cgagcagcac aggcggcccg tcgcgcctgt
    70861 ttattatgcg tcctgtcgcc accacgctgc tgatggtggc gatcttactc gccgggatta
    70921 tcggttatcg cgccctgccc gtttcggcgc tgccggaagt ggactatccg accattcagg
    70981 tggtcacgct ctacccaggt gccagcccgg atgtcatgac ctctgccgtt accgcgccgc
    71041 tcgaacgcca gttcgggcag atgtctggcc tgaaacagat gtcgtcgcaa agttccggcg
    71101 gtgcgtcagt tatcactttg cagttccagc taacattacc gctcgatgtc gccgagcagg
    71161 aagtgcaggc cgcgattaac gctgcgacca acttgttgcc gagcgatctg cctaacccgc
    71221 cggtttacag caaagtgaac ccggcagatc cgccgatcat gacgctcgcc gtcacctcaa
    71281 ccgccatgcc gatgacgcaa gtggaagata tggtggaaac ccgcgtcgcg cagaaaatct
    71341 cgcagatttc cggcgtcggc ctggtgacgc tttccggcgg tcagcgtccg gctgttcgcg
    71401 tcaaacttaa cgctcaggcg attgccgccc tcggcctgac cagcgaaacc gtgcgcaccg
    71461 ccattaccgg cgctaacgtt aactcggcaa aaggtagcct cgacggccct tcccgtgcgg
    71521 tcacgctttc cgcgaacgac cagatgcaat ccgccgaaga gtatcgccag ctaatcatcg
    71581 cctaccagaa cggcgcgcca attcgtctgg gcgatgtcgc aactgtagag caaggtgcag
    71641 aaaacagctg gctcggcgcg tgggcgaaca aagaacaggc cattgtgatg aatgttcagc
    71701 gccagcccgg tgctaacatt atctccaccg ccgacagcat tcggcagatg ctgccacagc
    71761 tcactgagag tctgccgaaa tcggtgaagg tgacagtgct ttccgatcgc accaccaata
    71821 tccgcgcatc cgtcgatgat actcagtttg aattgatgat ggctatcgcg ctggtagtca
    71881 tgattatcta cctgtttttg cgcaatattc cggcgaccat cattcccggt gttgctgtac
    71941 cgctgtcgtt aatcggcact ttcgcggtta tggtgtttct cgatttttca atcaataacc
    72001 tgacactgat ggcgttaact atcgccaccg gattcgtggt cgatgacgcc atcgtggtga
    72061 tcgaaaacat ttcccgctat atcgaaaaag gcgaaaaacc gttggcggcg gcgctcaagg
    72121 gcgcaggtga aatcggcttt accattatct cgctgatctt ctcactgatt gcggtgttga
    72181 tcccactgct gtttatgggc gatatcgtcg ggcgactgtt ccgcgaattt gctattaccc
    72241 tggcggtagc gattttgatc tcagcggtgg tgtcgctgac cctgacaccg atgatgtgcg
    72301 cgcggatgct cagccaggag tcgttgcgta aacagaaccg cttctcccgt gcctcggaaa
    72361 aaatgttcga caggataatc gccgcctatg gtcgtggact ggcgaaagtg ctgaatcatc
    72421 cgtggctgac cttaagcgtg gcactcagca cgctgctgct tagcgtgctg ctgtgggtgt
    72481 tcattccgaa aggtttcttc ccggtacagg acaatggcat tattcagggc actttgcagg
    72541 caccgcaatc cagctccttt gccaatatgg cccagcgaca acgccaggtc gcggacgtga
    72601 ttttgcagga tccggcagtg caaagcctga cctcatttgt tggcgttgat ggcactaacc
    72661 cgtcgctgaa tagtgcacgt ttacaaatca acctcaaacc gttggatgaa cgtgatgatc
    72721 gggtgcaaaa agtcatcgcc cgtctgcaaa cggcggtaga taaagtgccg ggcgtcgatc
    72781 tcttcctgca accaacgcag gatctgacta ttgatactca ggtcagccgc acccagtacc
    72841 agtttacctt gcaggccacc tcactggatg cgctcagtac ctgggtgcca cagttgatgg
    72901 aaaaactcca gcaactgcca cagctttctg atgtctccag cgactggcag gacaaagggc
    72961 tggtggcgta tgtcaatgtt gatcgcgaca gcgccagccg tctggggatc agcatggcgg
    73021 atgtcgataa tgccctgtac agtgcgtttg gtcagcgact gatttccact atttatactc
    73081 aggctaacca gtatcgcgta gtgctggagc acaacaccga aattaccccg ggcctcgcgg
    73141 cgctggatac cattcgcctg accagtagcg acggcggcgt ggtgccgtta agctcaattg
    73201 ccaaagttga acagcgtttt gcgccgcttt ccatcaacca tctggatcag ttcccggtaa
    73261 cgaccatctc ctttaacgtg ccggataact attcgctggg cgatgcggtg caggcgatta
    73321 tggacaccga aaagacgctg aatctgccgg tggatatcac cacgcaattc cagggcagca
    73381 ccctcgcctt ccagtcggcg ctgggcagca ctgtctggct gattgtcgcg gcggtggtgg
    73441 cgatgtatat cgtgctcggc attctgtacg agagctttat tcacccgatc accattctct
    73501 cgacgctacc caccgcaggg gtcggcgcgc tgctggcatt aatgattgcc ggtagcgaac
    73561 tggatgtgat tgcgattatc ggcattattt tgctgatcgg tattgtgaag aagaacgcca
    73621 tcatgatgat cgacttcgcg ctggctgctg agcgcgagca aggcatgtcg ccgcgcgatg
    73681 caatctacca ggcttgtctg ttgcgttttc gtccgatcct gatgaccacc ctggcggctc
    73741 tgcttggcgc gctgccgctg atgttgagta ccggggtcgg cgcggaactg cgtcgtccgt
    73801 taggtatcgg catggtcggc ggtctgattg tcagccaggt gctgacgctg ttcaccacgc
    73861 cggtgattta tctgctgttc gaccgcctgg cattgtggac caaaagtcgc tttgctcgcc
    73921 atgaagagga agcgtaagtg aagttttttg ccctcttcat ttaccgtccg gtggcgacga
    73981 ttttactgtc ggttgccatt accctgtgcg gcatactggg cttccgtatg ctgccggtcg
    74041 ccccgctgcc gcaggtcgat tttccggtga ttatggtcag cgcctcgctg cccggtgcgt
    74101 caccagaaac aatggcgtct tccgttgcca cgccgctgga gcgctcactt gggcgcattg
    74161 ccggagtcag tgaaatgacc tccagcagtt cgctcggcag cacgcgtatt attttgcagt
    74221 ttgattttga ccgggatatc aacggcgcgg cgcgcgatgt gcaggcggcg atcaacgctg
    74281 cacaaagttt gctgcccagc gggatgccca gccgtccgac ctatcgcaaa gctaacccgt
    74341 cggatgcgcc aattatgatc ctcacgctga catccgatac ttattcgcag ggtaaactgt
    74401 acgatttcgc ctcgacgcag ctggctccga cgatttcgca aatcgacggt gttggtgatg
    74461 tcgatgtcgg cggcagctca ctgcccgccg tacgcgtcgg gctgaatccg caggcgctgt
    74521 ttaatcaggg cgtctcgctg gacgacgtac gcactgccat cagcaatgcc aacgtgcgta
    74581 aaccgcaggg ggcgctggaa gatggcactc accgctggca gatccagacc aatgatgagc
    74641 taaaaaccgc cgccgaatat cagccgctga ttattcatta caacaacggc ggcgcggttc
    74701 gtctgggcga tgtggcgaca gtgaccgact ctgtacagga tgtacgtaac gccgggatga
    74761 ccaatgccaa accggctatt ttgctgatga tccgcaagct gccggaagcc aatattatcc
    74821 agacggttga cagcatccgg gcaaaattac cggagttgca ggaaaccatt ccggcggcga
    74881 ttgatctgca aattgctcag gatcgctccc ccaccattcg cgcctcgctg gaagaagtcg
    74941 agcaaacgct gattatctcg gtggcgctgg tgattctggt ggtgttttta ttcctgcgct
    75001 cgggtcgcgc aactattatt cccgccgttg cggtgccggt ttcgctgatt ggtacgtttg
    75061 cggcgatgta cctgtgcggt ttcagtctca ataatctttc gttaatggcg ctcaccatcg
    75121 ctactggttt cgtggtggat gacgccatcg tggtgctgga aaacattgcc cgtcatctgg
    75181 aagcgggaat gaaaccgttg caagccgcac tgcaaggtac tcgcgaagtc ggttttacgg
    75241 tgctgtcgat gagtctgtca ctggtggcgg tgttcctgcc gctgctgttg atgggcggat
    75301 tgccgggccg actgttacgc gaatttgccg tgacgctttc tgtcgccatt ggtatatcgt
    75361 tgctggtttc tctgacatta acgccaatga tgtgtggctg gatgctgaaa gccagcaagc
    75421 cgcgcgagca aaagcgactg cgtggttttg gtcgcatgtt ggtagccctg caacaaggct
    75481 acggcaagtc actgaaatgg gtgctcaatc atacccgtct ggtgggcgtg gtgctgcttg
    75541 gcaccattgc gctgaatatc tggctgtata tctcgatccc gaaaaccttc ttcccggagc
    75601 aggacactgg cgtgttgatg ggcgggattc aggcggatca gagtatttcg tttcaggcga
    75661 tgcgcggtaa gttgcaggat ttcatgaaaa ttatccgtga cgatccggca gtggataatg
    75721 tcaccggctt tacaggcggt tcgcgagtga acagcgggat gatgtttatc accctcaagc
    75781 cacgcgacga acgcagcgaa acggcgcagc aaattatcga ccgtctgcgc gtaaaactgg
    75841 cgaaagaacc gggggcgaat ctgttcctga tggcggtaca ggatattcgc gttggtgggc
    75901 gtcagtcgaa cgccagctac cagtacacgt tgttatccga cgacctggcg gcactgcgag
    75961 aatgggagcc gaaaatccgc aaaaaactgg cgacgttgcc ggaactggcg gacgtgaact
    76021 ccgatcagca ggataacggc gcggagatga atctggttta cgaccgcgac accatggcac
    76081 ggctgggaat cgacgtacaa gccgccaaca gtctgttaaa taacgccttc ggtcagcggc
    76141 aaatctcgac catttaccag ccgatgaacc agtataaagt ggtgatggaa gtggagccgc
    76201 gctataccca ggacatcagt gcgctggaaa aaatgttcgt tatcaataac gaaggcaaag
    76261 cgatcccgct gtcgtatttc gctaaatggc aaccggcgaa tgccccacta tcggtgaatc
    76321 atcagggatt atcggcggcc tcgaccattt cgtttaacct gccgaccgga aaatcgctct
    76381 cggacgccag tgcggcgatc gatcgcgcaa tgacccagct tggggtgcct tcgacggtgc
    76441 gcggcagttt tgccggcacg gcgcaggtgt tccaggagac gatgaactcg caggtgatcc
    76501 tgattatcgc cgccatcgcc acggtgtata tcgtgctggg tatcctttac gagagttacg
    76561 tacatccgct gacgattctc tccaccctgc cctcggcggg cgttggagcg ctgttggcgc
    76621 tggagctgtt caatgccccg ttcagcctaa tcgccctgat agggatcatg ctattaatcg
    76681 gcatcgtgaa gaaaaacgcc attatgatgg tcgattttgc gcttgaagcc caacggcacg
    76741 gtaacctgac gccgcaggaa gctattttcc aggcctgtct gctgcgtttt cgcccgatta
    76801 tgatgaccac cctggcggcg ctgtttggtg cgctgccgct ggtattgtcg ggcggcgacg
    76861 gctcggagct gcggcaaccc ctggggatca ccattgtcgg cggactggta atgagccagc
    76921 tccttacgct gtataccacg ccggtggtgt atctcttttt cgaccgtctg cggctgcgtt
    76981 tttcgcgtaa acctaaacaa acggtaaccg agtaaatgac agatcttccc gacagcaccc
    77041 gttggcaatt gtggattgtg gctttcggct tctttatgca gtcgctggac accaccatcg
    77101 taaacaccgc ccttccctca atggcgcaaa gcctcgggga aagtccgttg catatgcaca
    77161 tggtcattgt ctcttatgtg ctgaccgtgg cggtgatgct gcccgccagc ggctggctgg
    77221 cggacaaagt cggcgtgcgc aatattttct ttaccgccat cgtgctgttt actctcggtt
    77281 cactgttttg cgcgctttcc ggcacgctga acgaactgtt gctggcacgc gcgttacagg
    77341 gcgttggcgg cgcgatgatg gtgccggtcg gcagattgac ggtgatgaaa atcgtaccgc
    77401 gcgagcaata tatggctgcg atgacctttg tcacgttacc cggtcaggtc ggtccgctgc
    77461 tcggtccggc gctcggcggt ctgctggtgg agtacgcgtc gtggcactgg atctttttga
    77521 tcaacattcc ggtggggatt atcggtgcga tcgccacatt gctgttaatg ccgaactaca
    77581 ccatgcagac gtggcgcttt gatctctccg gatttttatt gctggcggtt ggcatggcgg
    77641 tattaacccc tggcgctgga cggcagtaaa ggtacaggtt tatcgccgct ggcgattgct
    77701 ggcctggtcg cagttggcgt ggtggcactg gtgctttatc tgctgcacgc cagaaataac
    77761 aaccgtgccc tgttcagtct gaaactgttc cgtactcgta ccttttcgct gggcctggcg
    77821 gggagctttg ccggacgtat tggcagtggc atgttgccct ttatgacacc ggttttcctg
    77881 caaattggcc tcggtttctc gccgtttcat gccggactga tgatgatccc gatggtgctt
    77941 ggcagcatgg gaatgaagcg aattgtggta caggtggtga atcgctttgg ttatcgtcgg
    78001 gtactggtag cgaccacgct gggtctgtcg ctggtcaccc tgttgtttat gactaccgcc
    78061 ctgctgggct ggtactacgt tttgccgttc gtcctgtttt tacaagggat ggtcaactcg
    78121 acgcgtttct cctccatgaa caccctgacg ctgaaagatc tcccggacaa tctggcgagc
    78181 agcggcaaca gcctgctgtc gatgattatg caattgtcga tgagtatcgg cgtcactatc
    78241 gccgggctgt tgctgggact ttttggttca cagcatgtca gcgtcgacag cggcaccaca
    78301 caaaccgtct ttatgtacac ctggcttagc atggcgttga tcatcgccct tccggcgttc
    78361 atctttgcca gagtgccgaa cgatacgcat caaaatgtag ctatttcgcg gcgaaaaagg
    78421 agcgcgcaat gaagttctgg cgacccggta ttaccggcaa actgtttctg gcgattttcg
    78481 ccacctgcat tgtcttgctg atcagtatgc actgggcggt gcgtatcagt tttgagcgtg
    78541 gctttattga ttacatcaag catggtaatg aacagcgatt acaactgtta agtgatgcgc
    78601 ttggcgagca gtatgcgcag catggcaact ggcgcttcct gcgcaacaat gatcgctttg
    78661 tctttcagat cctgcgttca tttgaacacg ataattcgga agataaaccc ggcccgggta
    78721 tgccaccgca cggctggcgt acccagttct gggtggttga tcaaaacaac aaagtgctgg
    78781 ttggtccgcg agcgccgatt ccacctgacg gtacacggcg acccattctg gtcaacggtg
    78841 cggaagttgg cgcggtgatc gcctcccccg ttgagcggtt aacgcgcaat actgatatca
    78901 atttcgataa acaacagcgg caaaccagct ggttgattgt cgccctggca acgttactcg
    78961 cggcacttgc cacttttctg ctggcgcgcg gtttactggc accggtaaaa cgacttgtcg
    79021 atggcacgca caaactggcg gcgggcgatt tcactacccg cgtaacgccc accagtgaag
    79081 atgaactggg caaactggcg caagacttca accagcttgc cagcacactg gagaaaaacc
    79141 agcaaatgcg gcgcgatttt atggccgata tttctcacga actgcgtacg ccattagcgg
    79201 tgctgcgcgg tgaactggaa gccattcagg atggcgtgcg taaattcacg ccggagacgg
    79261 tggcgtcttt acaggcggag gtcggtacac tgaccaaact ggttgacgat ctccatcagt
    79321 tgtcgatgtc tgatgaaggc gctctcgcct atcaaaaagc accggtagat ttgatcccac
    79381 tgctggaagt ggcgggcggc gcatttcgcg aacgattcgc cagtcgtggc ctgaaactgc
    79441 aattttccct gccagacagt attaccgtat ttggcgatcg cgaccgttta atgcagttat
    79501 tcaataattt acttgaaaac agcctgcgct atactgacag cggcggcagc ctgaaaatct
    79561 ctgccgagca gcacgacaaa acggtgcgcc tgacctttgc cgacagtgcg ccaggtgtca
    79621 gtgacgagca gctacaaaaa ttatttgaac gtttttatcg caccgaaggt tcccgcaacc
    79681 gcgccagcgg tggttccggg ctggggctgg cgatttgcct gaacattgtt gaagcacata
    79741 atggccgcat tattgctgcc cattcgcctt ttggcggggt aagcattaca gtagagttac
    79801 cgctggaacg ggatttacag agagaagtat gaccgagtta ccaatcgacg aaaacacacc
    79861 acgtattttg atcgtggaag atgaaccgaa gctggggcag ttgctcattg attatctgcg
    79921 tgctgcgagc tatgcgccga cgcttatcag ccacggcgat caggtactgc cgtatgtgcg
    79981 ccagacacca ccggatctga tcctgttgga tctgatgctc cctggcaccg atggcttgac
    80041 gctgtgccgg gaaattcgtc gtttttctga cattcctatc gtgatggtga cggcaaaaat
    80101 cgaagagatc gaccgcctgc tcggactgga gattggcgca gatgactaca tctgcaagcc
    80161 gtacagccca cgggaagtgg tagcgcgcgt caaaaccatt ttgcgccgtt gcaaaccgca
    80221 gcgcgaattg cagcaacagg atgccgaaag cccgttgatt atcgacgaag gtcgttttca
    80281 ggcttcatgg cgcggtaaaa tgcttgacct gacacctgcg gaatttcgtc tgttgaaaac
    80341 gctctctcat gaaccaggaa aagtgttctc ccgcgagcaa ttgctcaatc atctttatga
    80401 cgactaccgc gtagtaaccg accgcaccat tgacagccac attaaaaacc tgcgccgcaa
    80461 gctggaatct ctcgacgccg aacagtcatt tatccgcgcc gtttacggcg ttggttaccg
    80521 ctgggaagcc gacgcctgcc gcatcgttta gttttagcga catgactttg ttagccggag
    80581 atggcgttca gaccagatcc ggcaacatta tcccacgcat ggtcagcaaa ctgacattat
    80641 ctctccgccc tggcaggcat cagaaaatcg ctcatacttt aatcggtaaa cagcaccttt
    80701 agatgctgtt ttcgatacgc aatttcaatc aaggagtcat tatggctggt tggtttgaac
    80761 tcagtaagag cagtgataat cagttccggt ttgtgctaaa agcgggcaat ggtgagacta
    80821 tcctcaccag cgagctgtat acatcaaaag cctctgcgga aaagggcatc gcgtcagtgc
    80881 gtagcaacag cccgcaagaa gaacgctatg agaaaaaaac ggcaagtaac ggcaaattct
    80941 atttcaatct gaaagccgcc aatcatcaaa ttatcggctc cagccagatg tacgccaccg
    81001 cgcaatctcg tgaaaccgga attgcctccg ttaaagccaa tggcacaagc cagacggtga
    81061 aagacaatac gtaattacga tgccgggcgt gggttgttgg cgtccggctt tattttctct
    81121 catcacagag ttactatccc tcaagaaatt attaaccatg aaatgagttt tctcctcata
    81181 actgataagg aaaattatgc tcaaaggatt gcgtacatta ttttcacgca gggttttgtt
    81241 taacgtcgaa atgaataatt ctgttgactg tgaattactt ctcatccagc aacaactcca
    81301 ggcattgata gccgaaccag gcaattattt agcacatgat tgtgatctca acgatactct
    81361 ggttctttgc cagcttaccc atcatcacaa tggatatata cgagaaaagg ccgtgcagta
    81421 tctggggcac aaagaggatg ttgcggctat agaagaatta ttacttgcag ctaatgactg
    81481 ggtaaaagag gttcgccttg ctgcaaccat agcattacgt catttaatga aggataagaa
    81541 tgcagcggca tttgccgtta atctacccat gatacgtaac cttctccaat gccagcgtta
    81601 cgatcaccgt gcatttgtag acgagatact tagatattta ttgacagaaa ataaccgccc
    81661 acaattaacg tattggctta cttgccctga taaaaagctc tcccgcgcgg tattacaaac
    81721 gctgattgaa tacggttact ttaatgatga atcttcactg ctttcaatac tcgataaacc
    81781 cgatgagggt ttgcgaatgc tggcgaccac ccactggctg cgtcaacaat taccattaag
    81841 cgaagcggta ttaactcgtc tgttaaaaga ccgctggccg cgtattcgac aagcaacgtt
    81901 atttagcctc actgaccgag caatagaaat gcctccggcg ttgcacagca cattactgct
    81961 ggataacaat atgttgatcc gcctacgcgc taaaaatatg cttcacgaag tcatggatgt
    82021 tccgcaattc tggcgtcatg ttgtcacttc tgcggaatat actccctcac agcgacgggc
    82081 cgctttatac gggctggatt ccattcatga tcccaatatt ttaaaactgg cagaatgggg
    82141 attatcacag aatgtattcc cactgcgttt agccgctatg cacattcttg caaaagctaa
    82201 tcctcgttgt ggcgtcaaag agactattct gaccacgctg gctaacccgg acgccgccgg
    82261 gttgcgattt atggttaaca tctgtgtatg gtgtcgcgtt ccgctcacgt tcgaggaaat
    82321 acgtcagttg caggaaaacg cgccgtcagt taaacatgct tgcgcatatt gtcggctgta
    82381 tcataacttg aacaaatggg acggtttaat tcttcttctt caatcgcaac acaagctaac
    82441 tgaagaattt gcaggtaaac agctcgcgat atggcaacgc aatttcaatc tttcgggcat
    82501 tcaaccgaat gctcttcagc gtcagcaact tcaggcgctt tttacccgca atccggaact
    82561 tcacaacaga ttatggggtt acattccttt taaataactt cgaattatag acttacgatg
    82621 acaaatgtac ctgctgacga gcggaaccaa aacgaaacaa tacgtgaagc tttacgcttg
    82681 ctacgagaaa aacttgccga gggactacgc agtggcgaag cccaaccgtg ggaaaaggat
    82741 ctgtttttac ataaagtgaa ggccggtaac aaataaatcc cccagtcttt tccctcacat
    82801 ttgcactgga gccaaccccg ccgattgcgc tacaatgccc gcccttaaag tgggggcact
    82861 cccctaaccg cttcatcagg tgaagcggat ctgacctgtc atcagaacga gagaattatg
    82921 tttaaaccgg aactcctttc cccggcggga acgctgaaaa atatgcgtta cgctttcgct
    82981 tatggcgcag atgctgttta tgcgggccag ccgcgttact ccctgcgtgt gcgcaacaac
    83041 gaattcaacc acgaaaatct tcagctcggc atcaatgaag cccacgcgct ggggaaaaag
    83101 ttttatgtcg tggtcaacat tgcaccgcac aacgccaagc tgaaaacctt tatccgtgac
    83161 ctgaaaccgg tggtggaaat ggggccggat gcgctgatta tgtccgatcc agggctgatt
    83221 atgctggtgc gtgagtactt ccctgaaatg ccgatccacc tctcggtgca ggctaacgcc
    83281 gtaaactggg cgacggtgaa attctggcag caaatgggcc tgacccgcgt gatcctctct
    83341 cgcgaactgt cgctggaaga gattgaagag atccgcaatc aggtgccgga tatggagatc
    83401 gagatcttcg ttcacggtgc gctgtgcatg gcctactccg gtcgctgcct gctctctggc
    83461 tatatcaaca agcgcgatcc gaaccagggt acctgcacca acgcctgccg ctgggagtac
    83521 aacgtccagg aagggaaaga agatgacgtt ggcaacatcg tacacaagta cgagccgatc
    83581 ccggtgcaaa atgttgagcc gacgctaggt atcggcgcgc caaccgacaa agtgtttatg
    83641 atcgaagaag cccagcgtcc gggcgagtat atgaccgcgt ttgaagatga gcacggcact
    83701 tacatcatga actcgaaaga tctgcgcgcc atcgcccatg tagaacgcct gaccaaaatg
    83761 ggcgtgcatt cgctgaaaat cgaaggccgt actaaatctt tctactattg cgcacgcacc
    83821 gcacaggttt atcgtaaagc tatcgatgat gccgctgcgg gcaaaccgtt cgataccagc
    83881 ctgctggaaa ctctggaagg tctggcgcat cgtggctata ccgaaggttt cctgcgtcgt
    83941 catactcacg acgattatca gaactacgaa tacggttatt cagtttctga ccgccagcag
    84001 tttgttggtg agtttaccgg tgagcgcaag ggggacctcg cagcggtagc ggtgaaaaat
    84061 aaattctccg ttggcgacag ccttgagctg atgacgccgc aaggcaacat taactttacc
    84121 cttgagcaca tggaaaacgc caaaggtgta gcgatgccgg tcgcaccagg cgatggttat
    84181 actgtgtggc tcccggtccc gcaggatctt gaactaaatt acgcgctgct gatgcgtaat
    84241 ttctccgggg aaaccacgcg taacccacac ggtaagtgat taatttcgat tatttttccc
    84301 ggatggaaaa ttcttagaaa ccgatcacat acagctgcat ttattaaggt tatcatccgt
    84361 ttcgctgaaa aacataaccc ataaaatgct agctgtacca ggaaccacct ccttagcctg
    84421 tgtaatctcc cttacacggg cttatttttt atgcataagc cctatccctg gtcaccgtct
    84481 tccattgacc acatcgatag aatctccctt catagcacga tgcctttcac gtaacggcat
    84541 cgtgctcgca caggttccgg ctaagcacaa ccagaacgcg catgtttgat gcttaccaaa
    84601 aaatattctc actctccaca tttgaatgtc agacgagcga caccatgtaa tcctacacct
    84661 tctgtcttca gctcaactat ttgcattttt ttgccctgag taacacagaa atgagttgca
    84721 tcatttttta ctatattttc tgcaccagat attctactcc tggctaaaga agcttcggct
    84781 tcggtgtagt attggttatc gagtttacgc tgaatattac ttttatatgc aagaccaaat
    84841 ttaccgatac ttgtctcatc attatgcaca gcacaaccag acataataaa aatactaatt
    84901 aatgatatag cagctatctt tttcatctca cctttcccca ttaaatacca acgacactct
    84961 ctagtgttta aatataataa tagctgatca ttatatttga ataggattat aataaatgtt
    85021 ctgtacaaca tttcctacat aagtaggact tacagacatg aaggcccttt ccaggtaact
    85081 ccatggggct ttaatatatt tggaatagta tatttaagat gccactgttt ggttgaatat
    85141 taggcatatg ctcttttttg aaatttatcg gtggctaccg ttaatattcg ctgttcccat
    85201 tgcaagctcc tggtggtaac cactgaatcc tccatacttg aactgacttt ttatcctccg
    85261 actttcatcc tgttctgact ccaccttttc ttttctgctc tacactatct acagaccaat
    85321 cataaaggca catacgatca tggcagaatt tcccgccagc ttactgattc ttaatggcaa
    85381 aagtactgac aatctaccct tgcgcgaagc aattatgctg ttgcgtgagg aaggaatgac
    85441 gatccatgtg cgggtcacct gggagaaagg tgatgccgca cgatttgtag aggaggcccg
    85501 gaagttgggc gtcgcaacgg taattgccgg tggtggcgat ggcaccatta atgaagtttc
    85561 tacggcgttg attcagtgtg agggggatgg catacccgcg ctgggaattt tgccattagg
    85621 aaccgccaat gattttgcca ccagtgtagg gattcctgag gcactggata aggcgctgaa
    85681 actggcaatt gccggtaacg ccattgcgat agatatggcg caggtcaaca aacaaacctg
    85741 ttttattaat atggcgacag gcggatttgg gacgcgtatt accacagaaa cgccggaaaa
    85801 attaaaagcc gcgctgggtg gcgtctctta catcattcat ggcttaatgc gcatggatac
    85861 tctgcaaccg gaccgttgtg aaatccgcgg tgaaaacttt cactggcaag gtgacgccct
    85921 ggtattggta ttggtaacgg gcgtcaggcc ggtggcggtc agcaattgtg tccgaacgcg
    85981 ttaattaacg atggcttgct gcaactgcgc atttttaccg gcgatgaaat tcttccggct
    86041 ctcgtatcaa ccttaaaatc tgacgaagat aacccgagta ttatcgaagg cgcttcgtcg
    86101 tggtttgata tacaagcccc acacgaaatc acttttaatc ttgatggcga accgttgagc
    86161 ggacaaaact ttcatattga aatacttccg gcggcgttgc gttgtcgatt accaccagat
    86221 tgtccattat tgcgttaatc aaactattct ctcttgaacc agggagaatc cgaaatgccg
    86281 gatgcggtgt aaatacctta tccggcatac agaacaatac tacaccgtaa ttaattttac
    86341 ccgtgtcttc tgcaatgcca gtttatccac ctctgataca gcatcatcgg taataataat
    86401 gtcaattttt tcgattggca gtacctgatt aaaaccgcga cggttaaatt tcgatgaatc
    86461 gagaacggca atcactttat tagcggctgt gaccatcgca ccgctaacgg aataaccctc
    86521 attaaaggtc gtaataccat taaccgcatc aataccatca gcaccgacaa acattaaatc
    86581 ggcattaata tcctgcaggg aacgttcagc aatagatcca tgcatagatc gcgttttatg
    86641 gcggaccgtg ccaccgcaga cgaccagagt aatgtcttta ttttcggaaa gggcaaacgc
    86701 tgccgggaga ctgttggtaa tcaccgtgat atttttagcg gtcattaatc cttcggcgat
    86761 aagcattgtg gtacttccgc tgtcgagaat aacggtcatc ccttcatgga tcattttgac
    86821 tgccgcctgc gctattctgt tttttggcgc gctggcgagc tgaaatcgct ctttaaaccc
    86881 gacttcctgg gtctcggttt cactattacc ggacattatt ttcgccgcac cgccatgaaa
    86941 gcgcgtaacc acgccttttt gttcgagaaa gcgcaaatcg gcacggattg tcgcttccga
    87001 ggcagcaaat actcccgcca gatcctgaac aagcacggtt ccctgttcat tcactaattg
    87061 gatgatctta ttccttcgct cgaatgaatt catcgtcatt tacccatatt caattgtggc
    87121 tagtgtaaac gaagggggac cattggtgaa tgatctgttt tgcacaatac cgggccagca
    87181 tcacgctggc ccgcggtttc atggaatgag caacactttg cccggcatgg cattacgagc
    87241 gatgtcacgc accgcctggg tgaagctttc aaagcttcca cggtgagcga ttaatggctc
    87301 caggcttaac ttacgttctg tcagcaaccg gctcgccgtt tcccactcct gccccggcca
    87361 agggctggaa tagttcatcc aactgccgat aaccgtcagc tctttacgca atattttgcc
    87421 aaacgttgcc gatgttaaat gcagatcctg atgcaacgtg cccaccagcg ccagttgggc
    87481 atgaggaccg gcaatctcta ccgccagttc gacagtttgc ggtacgccag ccgtctcgag
    87541 gataagctga ttaaaacgca gttcgcgtaa aacgctctgc atttgcggcg cgctcatttc
    87601 gctactgtta aatgtttgca tcgaaccgaa agattttgcc agtgccagtt tttctgagct
    87661 aatgtcgata gccgtcacac tctttgctcc cagcgcgaca gcgcactgaa tagccagcag
    87721 gccaatggtt ccggcaccaa taataataac gtttttattc tcacaacctt gcgctaaatg
    87781 aaaagcatgc agaccaacgg taatcggctc aataaaagcc ccatcctcaa taggcatatc
    87841 cgtgggtaga gcaaagacat tttttcgctt aacgacaata tattcagcaa atccaccatc
    87901 acgccgcgag ccaataaaat catattttgc gcactgggaa taaaaccctt tcagacactc
    87961 tggacaagta aaacagggta ataacggcac acaggcaacc gcatcgccag ggtgtaaatc
    88021 atcaacaccg gatcccaccg catcaatata gccgctaaat tcatggccta acgttattgg
    88081 ataataatgt gcaccatttt taaatatcct gggtaaatcg gaaccacata agcccgagct
    88141 ggcaattttt acccgcacct catcctgatg tttaatttca ggaatgacgc tttctgcaac
    88201 gcgcacgata ccatcagtat cattcaccac tgatttcata aaaactcctg attgttaagg
    88261 gggataaact ccccctcagt taaaaattat tctgcgagaa cggctttctc ttgtttaata
    88321 aaaccacgcg ctctacgcca ggtaatgaaa ataccggtca gataaattgc gccgataata
    88381 atgaaaccgg gaatattttg cggggagaaa acctgaatca gtaaccaggt aatgggagaa
    88441 ccgccctgat ccattgaagc caccataccc ccggctttta acgccccagc attagccgcc
    88501 agttgggtgt gcaaaccaat agtttgcgtc gcgatccaca gagtgatgct catgatgatg
    88561 acacccgaga ttaaggtgcg gaacagattt ccacgatgca cggcgactgc catcgccaca
    88621 aagaagccga tggtggcaag atcgccaaac ggcagtacct gattacccgg aacacaaaca
    88681 gcaattaaaa tggtgagcgg gataaaaatc aggcttaccg ataccaccgc cgtatgcccc
    88741 agcagtaatg cgggatccag gccaatcagg aactcctgac cgccgaactt cgcctgtaaa
    88801 cgactacggg cctgcttagc gatgggcgtt aaaccatcca tgatgggttt aatcacccgt
    88861 ggcattagca gcatcactgc cgccgttttt accgccagct gcaatacacc tttgacatcg
    88921 taacccgcga ggatgccgat aatcagcccc atcacaaaac ccacggtgac aggttcgcca
    88981 aaagggccaa atttgcgctg aatatcatcg gcgctaaatt taattcggtt aacgcctggg
    89041 attttctcga tgatagcatc gaccagcacc gcaatcggcc ccatatacgc cgacgtaccg
    89101 tgcggaatag caataccttc cagctcaaag aaatttcggg tatcgcgggc aaaccagtcg
    89161 ccgagcttat aaacaaacgc cgcgtgaatt accacacccg ccatccctat catccatgaa
    89221 ccggttgcca gatgcagcaa cgcgccggtg aaagtcatat gccagatatt ccagatatca
    89281 acatttacca cccgcgtcat acgggtcagt aacatcgcca cgttaaccag aatagcaatc
    89341 ggaatcgcca ccagcgcaat ttgcgacgcc caggtcattg gtgaagagcc cggccagccg
    89401 acatcgacca catgcagatt caggtcgaaa ttttccgcca tcgctttcgc cgccggacca
    89461 atggaatcca gcattaagcc aatcacaagg ccaatgccaa caaagccaat ccctatatga
    89521 agacccgctt taaagcaatc gcctgccttc atgcctaata ttttagaaaa aataatgatg
    89581 acaatcggca gcatcaccgt agggccgagg tcgagaatat aacgcatgac ttctgaaaac
    89641 ataggtcacc cctgtaagat agtcagaatt ttattttgta atgcttcgat accgacacca
    89701 gaaacaaaag gcatgccgtg aactaacgga atatcgccaa aactacgatc caccctggca
    89761 gtagtgcata tcaaatgcac gccatccata taggtttcta tttcattaac ccgacactgg
    89821 attaattcaa caggaatatt atgattctga cacaattctt taatttcttc cgccgccatc
    89881 gtagaggtcg caaccgcgcc tccgcaagcg acaataatct tgcgtttcat aaatagtcct
    89941 ttttattgtt acagagggat ttattcgtct gaatctaaaa catactttgt gaagtattcc
    90001 tttaactggg tttcaggaag agtgattagt gtctcgacga tatcgggctg ttgtaacttg
    90061 ccaaataaac agcgtaaaag tttcaattgc tgctgcggat tttccacaat caacgcaata
    90121 accaacgata cctccacgtc gttatcatca tccgcttgct gaaaatgaac tttatttgtt
    90181 ggccttaaca gataaatggc tgacgactta gcatgaatcg cctcacaatg cggtattgca
    90241 atggcgtgct gctcaagcat tatcccggta gggaattctg cttctctggc aattaatgcc
    90301 tgtggccagg tatcatgaac cacacctttg gcgagcatct cattaccgat atgggttaaa
    90361 acttcgctac gatcgacaaa agaaattccg ctacgaacaa acaggttagt catataccgt
    90421 ccttattccg cacagccgta gcgataggcg cgcaaaacat cataaatttt atccataatc
    90481 agctaatgcg gtattgctga taattccccg gactgaatgc gttcaaattg tttgggaaga
    90541 tactgactaa tcatgcccag tgggatgtcc acgccttcaa gattcaccat catcgtttcg
    90601 acgctatttt taatccgact atgcggccag taataacgaa tacgatccga caggctgtaa
    90661 cgaatatcca gtaatgaatc gttaaaaccc gtacgataat attttttcca gtattgcggt
    90721 tcgtcgagca tcacttcttc aattaccgcc aggcaaccgc tgcgattttc aggggcgata
    90781 agttcctgct caatttgtgc cagtgcaaat atcgcctcgc gtaaagcaaa ggttaatgcg
    90841 ggaccgactt tcaatattgc aaagtgatcg cggactaatt cccaataagc cgtccgggtc
    90901 tggtaatcgg tagaatgtgc ttcataaacc attcgggtgt tttctatcca ttgcgccagc
    90961 ggctgcgctt cctgcggctg ataatggata atattgctgt gatcaaattc cacgcccggc
    91021 tgcaccacga tggcaatcac gcgtgttaac gcctctgtca gcccacggac aataaaggcc
    91081 ttttgatgcg tacgtaaagt attggcggca tcttcaacat gggtgatgtg tactgactga
    91141 atggcgctgg cctcaccgcc cggaaccgga acttcggtgc caatgacata gctcagttgc
    91201 tcacgctggc aatctgtcgc cacactttcc gcagcaaagc aaagcacagc agctcgttcc
    91261 gcaaccgttt ctggtgctaa cggtatggga tcccccgcgc aggacattga cgcatcaaga
    91321 tgaattttac tgaagccggc acgaacatat tcctttacca gctcgacgga tttttccatc
    91381 gccgcatccg cattttcttg ctgccagcag tttggcccca gatgatcgcc gccgagaata
    91441 atgcgttcgc gtgcaaaccc aactttatcg gcaatcgtaa aaacaaattc gcgaaagtct
    91501 gccggtgtca ttccggtata accgccaaat tgattgacct ggtttgacgt tgcttcaatc
    91561 agcactttgc gcgtgctgtt gcgatcaaat gccagcgccg cttcgataac caacggatgg
    91621 gcagaacaga ctgaacatat gccgatatgt tcaccagctt tatgccgggc aattaacgtt
    91681 ttcatgtttt ttccttatta aatggcaggt gcgttatgcc ctgccctcgc agccacaatc
    91741 ggcaatcact ttgctcacca catcgcgcat tgcggattta gccgactgca aataatcccg
    91801 gggctcggtc gcttcagggt gctcggtcag gtaatttttt aacgcctgcg agaaggcatt
    91861 tttcagctcc gttgcaacgt tgattttgca tatccccagt ttgatggttt gctgaatatc
    91921 cttagtcgat aaccctgacg cgccatgcag caccagcggt aagttcaccc actggcgaat
    91981 gttctccagt ctagaaaaat caagcgccgg tgcgctggca tacatcccat gagccgtgcc
    92041 gatggcgacc gccagggaat caattccggt tgcctcggca aattcacgcg cctgagcggg
    92101 gttggtataa aaagcatcgg cttcattgac ttgcacatca tcttcctggc cgccaagttg
    92161 ccccagctcc gcttcgacgc tgacatcaaa gcgatggcaa aaatccacca cctctttgac
    92221 ccgtgaaata ttttgcgcaa aaggcaaatg cgaggcgtca atcatgactg agcgcacgcc
    92281 agaacgaacc ttctgagcga tatcgtcaaa tttcgtgtga tggtcgagat gaattgccag
    92341 tggatggtga tattgcttcg ccatcgcgct gaccagcgcc aacagatttt ctgtaccagc
    92401 atgagtaaat gtgccaggcg ttccggcgat gatgaccggc gcatgcaggt tggcagcggt
    92461 ttccaccacc acttgcatcg tttcgagatt gtgaatattg aatgccggaa ccgcataacc
    92521 gccgcgctgt gcgttgttca gcatctgctt tgtcgatacc acgtgcattt tcatatcctg
    92581 tcgtttgttt tcgttttcaa aatataatga aattatttgt ttttaaatat cgagataacg
    92641 atcacaaaaa cgacaatatg aaaattattc gaggagtgaa aggcaaaaaa acggcctccc
    92701 gatagggaag ccgtagcaaa gtgcgcgtgt ttttatgccg gatgcggtgt aaacatacgt
    92761 ggcagtgcta tgtaggcatg ataagacgct tccgcgtcgc atcaggcata ggttgccgga
    92821 tgcagtgtaa acgccttatc cgtcctacgg ggtggtgttg ttcgtataag gcgtatcagg
    92881 caatagtaat tttgctatcg agataaacgt cctgcacggc gttaatcagt ttcacgccgt
    92941 cagccatcga tttcttgaac gccttacgtc caagaatcag ccccattccg ccagcgcgtt
    93001 tgttgataac cgcagtacgc actgcatcac tgaggtcagt ttcaccgcct gcagcaccgc
    93061 cggagtttat caacccagcc cggcccatat agcagttagc taactgataa cgcaccagat
    93121 caatcgggtt ttcgctggtt aacttgctgt acacgcgatc gtcggtataa ccgtaattaa
    93181 tcgctttata gccgccgtta ttttccgcca ttttttgttt gacgatatct gcgccgatgg
    93241 ttgccgccag atggtttgcc tgaccggtca ggtcggcgga aacatggtaa tcaacgccat
    93301 ctttcttaaa ggcggagtta cgcaaatagg cccacagcac ggtcaccatg cccagctcat
    93361 gcgcacgttc aaaagccgca gaaatttctt caatctggcg acgtgactct tccgagccaa
    93421 aatagatagt cgcaccaacc gccaccgcgc ccatgttgaa agcctgctcc acgctggcat
    93481 acagcgtttg atcgtaggta ttcgggtaac ttagcgtctc gttgtgatta agtttgacga
    93541 gaaatggaat gcgatgcgca tagcgccgcg ataccgacgc caacacgccg taagttgata
    93601 ccacacagtt acagcccgct tcgatcgcca gttcaacaat gtttttcggg tcaaagtaga
    93661 gcgggttagc agcaaatgaa gctccggcag agtgctcaac gccctggtca accggcagaa
    93721 tagaaagata tcctgtgcca gccagacgcc cggtgttgta caacgtctgc atattacgta
    93781 acaccgctgg cgggcgatta ttgtcaatca ttacgcggtc tacgtagtca tgtccgggga
    93841 gataaagctg gtcagaagga attgtcatac aacggtgctg taaaaggttg tcggcgtctt
    93901 tgccaagcaa ctgcgcaata tctgtcatta ctatgctccc gtaaattccg attggatatc
    93961 ggctatggat tgtcctggcc cgccttttgc gggcaatcat aatcctggtc gttacgggcg
    94021 agtttttcca tcttttggat gttttttcag cgttttctgt tggctcgatt catcagaaaa
    94081 aatgttagcg cggtcaagtt ttcaccgtaa agatatttaa aaggtattat taagtggtat
    94141 tgtcatcgcg taccttacat tacctgtcat gaaggaatta aaagatgaaa acaacagcaa
    94201 agctgtcgtt catgatgttt gttgaatggt ttatctgggg cgcgtggttt gtgccattgt
    94261 ggttgtggtt aagtaaaagc ggttttagtg ccggagaaat tggctggtcg tatgcctgta
    94321 ccgccattgc ggcgatcctg tcgccaattc tggttggctc catcactgac cgctttttct
    94381 cggcgcaaaa agtgctggcg gtattgatgt tcgcaggcgc gctgctgatg tatttcgctg
    94441 cgcaacagac cacttttgcc gggttctttc cgttactgct ggcttactct ctaacctata
    94501 tgccgaccat tgcgctgact aacagcatcg cttttgccaa cgtgccggat gtggagcgtg
    94561 atttcccgcg cattcgtgtg atgagcacta tcggctggat tgcctccggt ctggcatgtg
    94621 gtttcttgcc gcaaatactg gggtatgccg atatctcacc gactaacatc ccgctgctga
    94681 ttaccgccgg aagttctgct ctgctcggtg tgtttgcgtt tttcctgccc gacacgccac
    94741 caaaaagcac cggcaaaatg gatattaaag tcatgctcgg cctggatgcg ctgatcctgc
    94801 tgcgcgataa aaacttcctc gtctttttct tctgttcatt cctgtttgcg atgccactgg
    94861 cgttctatta catctttgcc aacggttatc tgaccgaagt cggcatgaaa aatgccaccg
    94921 gctggatgac gctcggccag ttctctgaaa tattctttat gctggcatta ccgtttttca
    94981 ctaaacgctt tggtatcaaa aaggtattat tgcttggtct ggtcaccgct gcgatccgct
    95041 atggcttctt tatttacggt agtgcggatg aatatttcac ctacgcgtta ctgttcctcg
    95101 gtattttgct tcacggcgta agttacgatt tttactacgt taccgcttac atctatgtcg
    95161 ataaaaaagc ccccgtgcat atgcgtaccg ccgcgcaggg gctgatcacg ctctgctgcc
    95221 agggcttcgg cagtttgctc ggctatcgtc ttggcggtgt gatgatggaa aagatgttcg
    95281 cttatcagga accggtaaac ggactgactt tcaactggtc cgggatgtgg acttttggcg
    95341 cggtgatgat tgccattatc gccgtgctgt tcatgatttt tttccgcgaa tccgacaacg
    95401 aaattacggc tatcaaggtc gatgatcgcg atattgcgtt gacacaaggg gaagttaaat
    95461 gaaaacagaa cgtattctcg gtgctcttta tgggcaggcg ttaggggatg cgatggggat
    95521 gccctccgag ctttggccac gcagccgcgt taaagcacac tttggctgga ttgaccgttt
    95581 tcttcctgga ccaaaggaga ataacgcggc ctgttatttt aaccgcgccg aattcaccga
    95641 cgatacctcg atggcgctgt gtctggcgga tgcgttactg gaacgtgaag gcaagatcga
    95701 tccggatctg attgggcgta atattctcga ctgggcgctg cgtttcgacg cctttaacaa
    95761 aaacgtacta ggtccgacct cgaagattgc gcttaacgcc attcgcgacg gtaaacccgt
    95821 tgctgaactg gaaaacaacg gcgtgaccaa cggcgcagcg atgcgcgtct cgccattagg
    95881 ttgtttgctt ccggcgcgtg atgttgattc ctttattgat gatgtagcgc tggcgtccag
    95941 cccgacccat aaatccgatc tggcggttgc aggcgcggta gtcatcgcat gggcgatttc
    96001 tcgtgccatt gacggagaaa gctggtcagc gattgttgat tcactgcctt caattgcgcg
    96061 acatgcccag caaaaacgca ccaccacgtt cagcgcctca ctggcggcgc ggctggagat
    96121 tgcgctgaaa attgtgcgca atgccgacgg caccgaatcc gccagcgaac agctttacca
    96181 ggtcgttggc gcaggtacca gcactattga gtccgttccg tgcgccattg cgctggttga
    96241 actggcacaa accgacccga atcgctgcgc cgtcctgtgc gctaaccttg gcggcgacac
    96301 agacaccatc ggtgctatgg cgacggcaat ttgcggcgcg ttgcatggcg ttaacgctat
    96361 cgatcctgcg ttaaaggcgg aactggatgc ggtaaatcag cttgatttca accgctatgc
    96421 cacagcgctg gcgaaatatc gtcaacaacg ggaggcggta tgagcggcgc tcgattacac
    96481 acgctgctgc ctgaattaac cacgcgtcag ccggtgatgg tcgtcggcgc ggcggtcatt
    96541 gacgtgatcg ccgacgctta tgccctcccc tggcgtgggt gcgatatcga actgaaacag
    96601 cagagcgtta acgttggcgg ctgcgcactg aatattgccg tggcgttaaa gcgcctcggc
    96661 atcgaagcgg gtaatgcctt gccgctcggt cagggcgtgt gggcggagat tattcgcaac
    96721 cggatggcaa aagagggctt aatcagcctg atcgataacg ccgaaggtga taacggctgg
    96781 tgtctggcgc tggttgagcc ggatggcgaa cgcactttta tgtcattcag cggtgtggaa
    96841 aatcagtgga atcgccagtg gctggcgcga ttaaccgttg cgcctggcag cctgctctat
    96901 ttttccggtt atcaactggc ctcgccctgc ggcgaattgt tagtggaatg gctggaagag
    96961 ctgcaagacg tgacgccgtt tatcgatttt ggcccacgta ttggcgatat cccggatgca
    97021 ttactggcgc ggatcatggc ctgtcgacct ttagtgtcgc tcaatcgtca agaggctgag
    97081 attgccgccg aacgttttgc tttatccgca gagataacaa cacttggcaa gcaatggcag
    97141 gagaaatttg ccgcgccgtt gatcgttcgt ctcgataaag aaggcgcatg gtatttcagc
    97201 aacgacgctt ctggctgcat tccggcattt ccaacgcaag ttgtcgacac cattggggcg
    97261 ggcgacagtc atgccggtgg cgtacttgcc gggctggcct ctggtctgcc actggcggat
    97321 gccgtattac tgggcaatgc agtggcgtcg tgggttgtcg ggcatcgggg cggtgattgt
    97381 gcgccaacgc gcgaggaact actcctcgca cacaaaaacg tatagatcgc tgcgacagtg
    97441 gctaatgctg tactcaatag gccgttgctg ttggtcaagc gccacttgct tgatcaccag
    97501 caccggtatt ttgctatcta actgaatatg tgactgaaac tcggcatccg gcatccgggc
    97561 gctaacgcgg gaacgcgtac gttgtgggta aatgtgctgg ctgcagaaat agtcataaag
    97621 tgaaatcccg atggcatcaa catcatgaat taaatgcgcc ggaacccacg attcctcaat
    97681 cgataccgct tcttcatcga catagcgaat acgcttaagc aaaaagacat cacttcctgc
    97741 ttcgaccgcc agctgctgcg cgacttcttc gggacatttc acgacacgct tgttaaccca
    97801 tagcgtatcg ggctttttcc cgcgcaatac cacctgctga gaaaaacctc gcgcttcttt
    97861 caacgagtat tcgaagatgt tgttgatctg cgtgccgtaa ccgcgcgaac gcgtcaccac
    97921 accctcttct tccagcgcct gcatcgcctt gcgcaccgta atgcgcgaaa cgccggttaa
    97981 ctgacttaaa tcacgctcac cgggcaaaat attgccatgc tccagcaccc cgctgcgcac
    98041 ggcatttttt accgtttcgg caaacttaat ataaagcggc gtgttatccg ccgctaaaat
    98101 acgctcgttc agttgggcaa tcagctgggt atgcgcttgt tccatttgtc tttttcctgc
    98161 cggggagtct ggtgggagta tatcactgct tcttatttaa ggcgtttctt taatcccatc
    98221 aacgaatgcc tgcaactcct ccaccgtgcc attaaataca ttaaaatcca ccggaccatt
    98281 gatgccatct acctgtccac ggtcggaatg ctgccagaag cgccaggcca tgccgtcatt
    98341 gtccggacga cgttgataat agtgagccac ccaccacgga tattcattga aatagcccgc
    98401 cagattcgtg tgataaaaaa cggctcctga gtaaataatc ggctttttcc ccgtactttt
    98461 ttcgaccatt tttagccact gacttaccct cttgcgtaat tcttttgccg ataattttcc
    98521 tcgctcttct acgtccagta ccgcagggaa atcgccttgt gagaaatcta ccgtttgcag
    98581 aaataatcgc acctgaaccg gtgctgctac cgacggggag aaataatgat atgccccgcg
    98641 cagcaggcca ttttcgcggc ttagttgcca gttacgcgaa aaataggggt ccaccagctt
    98701 ttcgccttcc gtcgccttaa taaaagcaaa ctgtaagcgg ataccgttgt cgcgcatttt
    98761 tgccacccgc tgccagtcga tccgctcctg ccagcgcgaa acatctattc cgtgaatggt
    98821 gtaactggca ggaatgcgaa tagcgaaaga tttaaccggg cgataaccgt agaagtggat
    98881 gtagtctgta atctgaactg ctgtcgaata gaaaaaattc accgtctgac gcggataaat
    98941 tgcaacgatg gaaattagcc caagagcgca taatagagag gtgagttttt ttcgactggt
    99001 aattcttagc tgcattggtt tcatccctga atgtcagtgc caaaggctga caataaccaa
    99061 agcagctata gtacggtgct caccaccagg cgtggaagtg gtgaaccgga ccaataccgt
    99121 gaccaacttc cagcgtgtcg gcctgggcta acgccgatga aagccagctt tttgcctcct
    99181 gtacggtgtc agcccagttt gtatggcgcg ggcgtagtgc agccaacgcc gcagagagtg
    99241 tacaaccagt gccgtgggtg tttttggtca taatgcgcgg tgcggtaaac cgttgttcac
    99301 cctcgcgggt aaacagccag tccgggcttt gctcatcatc cagatgacca cctttcatta
    99361 gcactgcgcc acagcccatc gccaacagcg atcgcccttg ttccagcatt tcctgttcgg
    99421 tgcgcgcgtg tggcgcgtcg agcaaggcgg cagcttcggg caagtttggc gttattaatg
    99481 aaacctgtgg caataatcga ctgcgcagcg tagcaaccgc cgaaggtgaa agcagcgggt
    99541 cgccgctttt tgccagcata acggtgtcga gtaccacgtt ttggatctga taacgttgca
    99601 accgttctgc caccgcttca acaatatcgg tttccgccag cataccgatt ttagtggtat
    99661 cgattcgcac atcgctgaac accgaatcga gctgggcggc gacaaaatca ggctcaatgc
    99721 gatacaccga ctgtacgcca cgggtatttt gcgccaccag tgcagtaata actgagcaac
    99781 cataagcgcc aagtgccgag aaggttttaa gatcggcctg aatccccgca ccaccactcg
    99841 gatcagtacc ggcaatcgtc agagcgttaa ttcgtttcat gcctgcacct cctgcgtcaa
    99901 ttgccagagc gcatcaagga aatgtggaac aaaactgcct ggcccctcgc ttctggcgac
    99961 tgcgcgttct ccggcttgtt tcatccagtg acaggcagat gcgacatttt ccagcgtatc
   100021 gcctggtaac gcacagcagg cagcgacaac cgccgataat gcacagccag ttcctaccac
   100081 tttggtcatt aacggatcac caccgtgaat accaatgata cgatgtccat cggtaacata
   100141 atccatctcg ccagtgacca cgacgattgc gccagtttcc cgtgccagtg tttgtgcagc
   100201 gggtatcgcg ttagctgcgg cgtcagtggt atccactccc cgtccgccat tagcaatgcc
   100261 agctaatgcc atgatttccg aagcattacc acgtatcgct gccggtttaa aagataaaag
   100321 ttcatgacaa aaatggcggc gataatcgag cgcacccacc gctactggat caagcgtcca
   100381 gggtgtttga gagctttttg cttgctcaac ggcagcacgc atcgcctgag cgcgtggctg
   100441 cgtcagtgtg ccaacgttaa tcaacaaggc actggcgata gccgcaaact gactggcctc
   100501 ttcggtttcg ataaccatcg ctggcgatgc accgagcgcc agcaaggtat tggcggtaaa
   100561 ggtttgcacc acatcattgg tcatgcagtg cacaagaggg gaatgttggt gaaaaaggtg
   100621 taacgcgtgc gcagattgcg ctgaacccag caggtcgact tgcatagttt gctcctgcca
   100681 taacgtgaag aagcaatgac ctggtggtcc gtgacttccc tacgctggca ttatccagat
   100741 caggtgatac gggtatttct cagccttcac gcagaagggc accccgagtc gtttggttgc
   100801 gatgataaat cgcagaggag gatggtaatg tccagcgcac gcgttgtaaa cgaggaaaaa
   100861 cggcagtttt acaatcgcgt taataaatta tttgatatat gaatccagca ccttcagaac
   100921 gacatccaga tcttcttcac gttttagctc atccccctgg tgaacgatgt gttccgtcag
   100981 atgaccttta atcacttccc gcatcagacc gtttaccgcg ccacggatag cagcaatctg
   101041 ttgtaaaact gcagcgcatt cgtgcggctc gtcgagcatt ttcttgagcg ccacgacctg
   101101 gccctgaatc ttactggcac gcgctttcag tttctgttta tcacggattg tatgagacat
   101161 ggcaacacct ggttaacaag aatatgaaaa atcatagcac tattaatcta ctggggggta
   101221 gtatcaggta ctggggggga gtagaatcag attgccgaat taatactaag aattattatc
   101281 atgaccgaat ttacaactct tcttcagcaa ggaaacgcct ggttcttcat ccccagcgcc
   101341 atcttacttg gtgcgcttca tggcctggaa ccagggcact caaaaacgat gatggcggcg
   101401 tttatcatcg ccatcaaagg caccattaaa caagcggtga tgctcggact ggcagcaact
   101461 atttcgcata ccgcagtggt ctggttaatt gcctttggcg ggatggtgat cagcaagcgc
   101521 tttactgctc aatcagcaga accgtggctc cagctgattt ccgcagtgat cattattagc
   101581 accgcgttct ggatgttctg gcgtacctgg cgcggcgaac gcaactggct ggagaatatg
   101641 cacgggcatg attatgagca tcatcatcac gatcacgaac atcaccacga ccatggacat
   101701 catcaccatc acgaacatgg cgagtatcag gatgcccatg cacgagccca tgccaatgac
   101761 attaaacgac gctttgatgg tagagaggtc accaactggc aaattttgtt atttggctta
   101821 accggtggcc ttatcccctg cccggcagca attaccgtgc tgttgatatg cattcagttg
   101881 aaagccctga cactgggcgc aacactggtc gtcagtttca gcattggcct ggcgttaacg
   101941 cttgtcaccg taggcgttgg cgcagcaatc agcgttcagc aggtcgcaaa acgctggagc
   102001 ggatttaaca ctctcgctaa acgcgccccc tatttttcca gtctgttgat tggcttagtc
   102061 ggtgtgtata tgggcgtaca tggcttcatg ggcataatgc gataactcaa tcctttaggc
   102121 ttgcatgtta tcttcagccc aggatgattc ttaaatcagc tatttccgct gactctctgc
   102181 tcgctaagga tgcttttagg gcatcctttc atttacactt tttacgaaat catgggatca
   102241 ctaacaaaat atcgcttgtc agttatattg tatggcagga aagatatgcg actgatatta
   102301 cagatcccca aagtggagag tttatgacca ttaaaaataa gatgttgctg ggtgcgcttt
   102361 tgctggttac cagtgccgcc tgggccgcac cagccaccgc gggttcgacc aatacctcgg
   102421 gaatttctaa gtatgagtta agtagtttca ttgctgactt taagcatttc aaaccagggg
   102481 acaccgtacc agaaatgtac cgtaccgatg agtacaacat taagcagtgg cagttgcgta
   102541 acctgcccgc gcctgatgcc gggacgcact ggacctatat gggtggcgcg tacgtgttga
   102601 tcagcgacac cgacggtaaa atcattaaag cctacgacgg tgagattttt tatcatcgct
   102661 aaaaaaatcc ccctcatcat gagggggaaa tgcagacacc ttgttatttt ttattattag
   102721 ccacttgctc gtcttgcttg ttattagtcg tatttcacgt tgattaatgc ggttgcctcc
   102781 aatgcgccag atttaacttt gtttgtatcg tagacgtagt aactggctgt tatcggaatt
   102841 gaaaccgttg tatctgtaag ttttgacttt gccgcaattt cttttaaatt tgtgtatcct
   102901 ttgctgttat cagtgatatt taaaagtgtg actggcgaac cattactttc aagaataaat
   102961 cctacgccat tatcttccgc acctttcagt attgtgttgc tgttggttaa caagtcagaa
   103021 cttgataaat acacctgcat tttccgtgat gtttgatttt gttgacctaa taaattttta
   103081 caacgcagaa taatatcccc ttttttacta tttattgttg ctttgttacc tgtggctggt
   103141 aattgtgaaa cgggaatacc ctctaaagta attaataaat cgtccggttt gcaggttgtg
   103201 gttatcgggt tgtatgacaa ggtcagatta aaggaataga cacctgcatt ttgtgccaat
   103261 gcatttctat agctatttac acatgcatcc catgacttgc cacctaataa acacagtaga
   103321 aattgtactg cggcactccc gcgtgtcgat gatgaagcac tggataatgt cgcaacacca
   103381 ttaatcatca ctgaaccgcc gccccccgca gaaacattca cttttgcatt actggccgca
   103441 ggtgtcaccg ttaccgaata accattggtg aaactggtct gattatttga caacgtgatg
   103501 ttatttttat tggtccattc aaaatgtaaa tttaatttaa tggtatcgtt ataaagtcca
   103561 acaataatat ccgacgggct cataggggtg atagtatttg tactcacgca tgacgaatca
   103621 ttaaaattat gctcatatgt cgccatttgt gtttgagtaa gtgcaaaatc cccctgaaca
   103681 accaagttgt gctgaacaga taactcacta taacatgccg catagctcac aggcataacc
   103741 atcatcatta atataaatag cattatgcga atttccatag aaccacctga ctattactgg
   103801 caaatataat ttctactttc atcaatctct ttaccgaagg tgattgtgca tgaaagtcct
   103861 tgttgcttat caattgctac attaaccgat ggcggtactt cattggtgcg aataaataac
   103921 tggcttccct gaccgacaac gccaatatta tgaccatgga tatcattgac ttcataacca
   103981 aacattaatg gttgcccatc cgctcttaac gcttttataa accagggctt gcgctgatcg
   104041 gtatcaaaat taaccagtac aaccgcgccg cgataagggg cggcaatttt ccggttgcca
   104101 cgtaattctg cttcgctatc gctttgcgac acatccagca tcaggtgatt ttcccgataa
   104161 ggtgtcattc cgtcgtatat caccactcca ttacggtttg ttgtgcgata tttttgccca
   104221 ttgacataag catctttaat tcctggcgca ttcatcacag caaacgtttc ggaaagacgg
   104281 ttcgccagat taacgccacc cgaccaggcg acaatgcccc ctgaaacact ggctccagcc
   104341 tgtcgataag tactcgactg actataactg ccattcactg tcgcaaccgg cgcgttccag
   104401 gtcaaattcg ccccagctgt cgtttcattt ccctgatgtt gatgactcag gttgacacca
   104461 taattgaact gatcccgact ccctactgtt cctgataatc ccgtattatt tgaggcaaac
   104521 ccctgatcat caaacgtcgt tgagttagac atatatattt gccgacgagg cgtcgtaacg
   104581 tcatcacccc aatcaaaggg aatcgatata aaaatattaa atcgtttctc ttcatgatga
   104641 ttctcgtcat aagcctggct tgccgcgagg gtatagctta tccgccgcca gttattggaa
   104701 taactcaact gataatcctt actgctgccg ctacgtcccc agtaatctcg ccataacgta
   104761 cttaaggaca cagaacccca gccttctggc aatgactggc tcatattggc agaaaagcta
   104821 tttttacggc caaaatcgtt ctggtaataa tcggcaatgt catagacatc gttttcatca
   104881 cggcgataat tatctttatt gtttgcccaa acgtgatcat taaatgtccg gtaatcacgc
   104941 gatgaataac gccaggccgc aagaccaaaa cgcgtcgacg tttggctcac aaatttgttg
   105001 taggcaattt gataactttg cccgtcaaac acatcgccgt tgtcttgttt actatgcgac
   105061 ttagtggcat cgacggaaat ggcaccaatg cgtgtattcc agccagtccc caaagtaaac
   105121 gcgtaataat tattcgcgac catcgagccg ccatacagcg tcaataaatt attaaaacca
   105181 tactgataac ccacctggac aaattcactt tgtttgctcg ccccttcaat atggctacga
   105241 cccgccgcaa aatcatattt cgacacgccg ggttgcagca tatttggcac cgctgcataa
   105301 ggcaccagat aggtggttac cgaaccgtcc gcctctttca cgctgacatc aagatctgct
   105361 ccaccaccgg ccaactgcaa atctgtaatc gcgaacgggc caggaggaac ctctttctga
   105421 taaacgacaa aaccattctg ttcaatagtt accagcgcgt tactctgagc aatcccctgc
   105481 acccgtggcg taaaattttg tttcgagtta ggcaacatct gcatatcacg aaacaaccgc
   105541 acacctctga agcgaacaga atcaaaaata tcgcttgatg tgtacatatc acccacgcga
   105601 agcgtgccga gaagttgggc aaatccacgt tccagataca gggtattgct tttccacacc
   105661 cctggattgt tatttgtttt actgaaactg gcatcagaat gcagttgcca ccccagtaaa
   105721 tttaacccgc tgttaaaacg tacatatgta ctcttgttat tacccgacgc tttatagtcg
   105781 ctgtaatact gactcagata ataagaggta taaaacgcat taataccccg ctcccagttt
   105841 tccggtggaa catagccact ttccagttct tccacccagg cctgcgggac actgaaatcg
   105901 agacgaaaaa ccccgatatc ccaggtatag ctcccaccct gaacaagttg ctcaaatgtt
   105961 aaacattgct taccgctggc gaagttatcg ctattaatgc ctaaccgctt gataacttct
   106021 cttgataaac atgtttcttg cgggttgtct ttaacaataa tctcatattt cccgcgccat
   106081 tgcttattga cataaatatc gatgtcatac tgccccggta agggttgatt atcatcaaga
   106141 cgaatatttg caacctgctg gtctttcatt ccacctatca taaaatgggt atcaaaggtt
   106201 tcttcagctg cataagcttc aatgccgagc aataacgcta cgattgctga tgcaagtggg
   106261 gtcattctca acataggcag ctcctgcaat taaattttgt cactaatata gttgccatgg
   106321 tcatcgataa tggtcagatg ccagttattt gcattattac ttttgacatt aacactctga
   106381 ctttctaagg gggcaatcat aatagtttca taattgactt tgacattatt agctttgaca
   106441 tccgaaatcg tcacccaatt agctgagtca ttttttatca ccaaaccatt gccactgcga
   106501 tttaccagca attttttaaa tgtcgcttta tttaccggag caatacccgc tggccggtaa
   106561 aacaacttaa ttctgttttg catcgcaaac ttcagtgcat tcttaccttc ttgctctgga
   106621 ctatttggtg gaatatccag aacattcaga taaaaaatgc tttctttatt agtgggcagt
   106681 ttattcggca taattttgat ttttacttgc tgcccggaat ttgcccctat ttttgccact
   106741 ggtggcgtta acatgaaagg aacctgaatt ttttctggtg gtaatgacgt atcgccatca
   106801 tcaatccacg cctgcagcag cgaagaacgg tttccctggt tcatcaactg caccatcact
   106861 tctttatttt ctgccgggta aataatgcgc gtcccgtaga taacaattcc ggcatgtgca
   106921 ggaaggacca tagaaaaaat gagtaaagat aataatcctt tcattttaat gcctcttaaa
   106981 ttaaaaggcc gccatgggat agcggccatg tttattacct ggagaaactt acaattttat
   107041 ttattaatcc tgcgccacac gcataaccag agaagataac acatcacctg attgcactga
   107101 gttatctgtc agtttcaggt attttgcttt aaacggaata gcatattgac cttccgctgt
   107161 tttataactc tcaatgttaa aaggtgcaga aacatccagg acatcgctgt tatcacctaa
   107221 atagagatag taacccacgg tatcgttgct actggctatc gccttatcgt taccggttat
   107281 tttatcgttg gtaatcaacg agagttttac accagcaact tctttcgggc agctaatttt
   107341 taacatgctg ctggttacac cgactgcatc atcataggta gaatatttag ctttaccttc
   107401 aaagacactg gttggtacag tcggcatatt aatacttact gaatcaccac ccgcttcgaa
   107461 tttacacgga gattctgcaa tattcccctt aatagttaat gttccggtat caacgtctgc
   107521 agcaaatact ccagcgctca taaaaaaaga agaaaagaca gcggcagcaa taattgaacg
   107581 tttcataata tgttccttaa taaaatttat ttttggttgt taaga
//
LOCUS       DADMJB010000002        69624 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.002, whole genome shotgun sequence.
ACCESSION   DADMJB010000002 DADMJB010000000
VERSION     DADMJB010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 69624)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 69624)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..69624
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.002"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..790
                     /locus_tag="JN078_000101"
     CDS             <1..790
                     /locus_tag="JN078_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708946.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY9039432.1"
                     /translation="DSLDIKTTLQANDIPGLTTDQVVSVNTRFTQIKSSTVYSAATQT
                     GVCQGDTSRYGPVNIGANTTFTLYVTKPFLGSMTIPKTDIAVIKGAWVDGMGSPSTGD
                     FHDLVKLSIQGNLTAPQSCKINQGDVIKVNFGFINGQKFTTRNAMPDGFTPVDFDITY
                     DCGDTSKIKNSLQMRIDGTTGVVDQYNLVARRRSSDNVPDVGIRIENLGGGVANIPFQ
                     NGILPVDPSGHGTVNMRAWPVNLVGGELETGKFQGTATITVMVR"
     gene            complement(833..1693)
                     /gene="rsmI"
                     /locus_tag="JN078_000102"
     CDS             complement(833..1693)
                     /gene="rsmI"
                     /locus_tag="JN078_000102"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HAY9039433.1"
                     /translation="MKQHQSADNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAE
                     DTRHTGLLLQHFGINARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPG
                     YHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIE
                     AEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVK
                     EDENRRKGEMVLIVEGHKAQEEDLPADALRTLALLQAELPLKKAAALVAEIHGVKKNA
                     LYKYALEQQG"
     gene            1757..3784
                     /locus_tag="JN078_000103"
     CDS             1757..3784
                     /locus_tag="JN078_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator"
                     /protein_id="HAY9039434.1"
                     /translation="MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQ
                     ADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDSQRREKT
                     LLAVEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIA
                     QEPLLGAKEKKQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDP
                     DMMKAGIADWQKRYPNNPGAKMLPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTI
                     QQGFEAAKNIGTQPVAAQVAAADVAEQPQPQTADGVASPAQASVSDLTGDQPAAQPVP
                     VSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEEL
                     LKSNTPLNVLVLNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSS
                     LGDRVANAFAQEWQKLGGGTVLQQKFGSTSELRAGVNGGSGIALTGTPITPRATTDSG
                     MTTNNPTLQTMPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGAMLYAS
                     SRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDA
                     WSLANHFSQMRQVQGFEINGNTGSLTANPDCVINRKLSWLQYQQGQVVPAS"
     gene            3742..4137
                     /locus_tag="JN078_000104"
     CDS             3742..4137
                     /locus_tag="JN078_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HAY9039435.1"
                     /translation="MATVPTRSGSPRQLTTKQTGDAWEVQARRWLEGKGLRFVAANVN
                     ERGGEIDLIMREGWTTVFVEVRYRRSALYGGAAASVTRSKQHKLLQTARLWLARHNGS
                     FDTVDCRFDVVAFTGNEVEWIKDAFNDHS"
     gene            4157..4747
                     /gene="diaA"
                     /locus_tag="JN078_000105"
     CDS             4157..4747
                     /gene="diaA"
                     /locus_tag="JN078_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA initiator-associating protein DiaA"
                     /protein_id="HAY9039436.1"
                     /translation="MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKI
                     LCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQ
                     VRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVE
                     IRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD"
     gene            4757..5332
                     /gene="yraP"
                     /locus_tag="JN078_000106"
     CDS             4757..5332
                     /gene="yraP"
                     /locus_tag="JN078_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divisome-associated lipoprotein YraP"
                     /protein_id="HAY9039437.1"
                     /translation="MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQ
                     VDDGTLEVRVNSALSKDEQIKKETRINVTAYQGKVLLVGQSPNAELSARAKQIAMGVD
                     GANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMG
                     LVTEREAKAAADIASRVSGVKRVTTAFTFIK"
     gene            complement(5446..6486)
                     /locus_tag="JN078_000107"
     CDS             complement(5446..6486)
                     /locus_tag="JN078_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HAY9039438.1"
                     /translation="MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWQHYYGKAFTA
                     AETHSIGKSILAQADANPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLR
                     TLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPVLNPAT
                     LVFMGFVLGWGFAAICLVAGLVMVLLIATLVQKWVRETPQTQAPVEIDIPEARSGFFS
                     RWGRALWTLFWSTIPVYILAVLVLGAARVWLFPHADGAVDNSLMWVVAMAVAGCLFVI
                     PTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAV
                     SGVIVGGLALLF"
     gene            complement(6559..7194)
                     /locus_tag="JN078_000108"
     CDS             complement(6559..7194)
                     /locus_tag="JN078_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417621.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HAY9039439.1"
                     /translation="MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGV
                     FNPHDPQLSDALAQVTEPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLG
                     AQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNE
                     TLFAPLFRLLPGNWKSIDARDVARVMLAEAMRPEHEGVTILSSSELRKRAE"
     gene            7322..7840
                     /gene="yhbO"
                     /locus_tag="JN078_000109"
     CDS             7322..7840
                     /gene="yhbO"
                     /locus_tag="JN078_000109"
                     /EC_number="3.5.1.124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417622.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein/nucleic acid deglycase"
                     /protein_id="HAY9039440.1"
                     /translation="MSKKIAVLISDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVK
                     GKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFA
                     ICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLP
                     AFNREALRLLGA"
     gene            complement(7820..8263)
                     /locus_tag="JN078_000110"
     CDS             complement(7820..8263)
                     /locus_tag="JN078_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhbP family protein"
                     /protein_id="HAY9039441.1"
                     /translation="METLITISRWLAKQHVVTWCVQQEGELWCANAFYLFDAQKVAFY
                     ILTEEKTRHAQMSGPQAAVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDLARKAYN
                     HRFPVARMLSAPVWEIRLDEIKFTDNTLGFGKKMIWLRDSGTEQA"
     gene            8314..8616
                     /gene="yhbQ"
                     /locus_tag="JN078_000111"
     CDS             8314..8616
                     /gene="yhbQ"
                     /locus_tag="JN078_000111"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708956.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage response exodeoxyribonuclease YhbQ"
                     /protein_id="HAY9039442.1"
                     /translation="MTPWFLYLIRTADNKLYTGITTDVERRYQQHQSGKGAKALRGKG
                     ELTLAFSAPVGDRSLALRAEYRVKQLTKRQKERLVAEGAGFAELLSSLQTPEIKSD"
     gene            complement(8603..9106)
                     /locus_tag="JN078_000112"
     CDS             complement(8603..9106)
                     /locus_tag="JN078_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HAY9039443.1"
                     /translation="MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGL
                     VATDDEGQVIGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNE
                     FGYAAVVTLGDPALYSRFGFELAAHHDLRCRWPGTESAFQVHRLADDALNGVTGLVEY
                     HEHFNRF"
     gene            complement(9100..9624)
                     /locus_tag="JN078_000113"
     CDS             complement(9100..9624)
                     /locus_tag="JN078_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 domain-containing protein"
                     /protein_id="HAY9039444.1"
                     /translation="MLDKLRSRIVHLGPSLLSVPVKLTPFALKRQVLEQVLSWQFRQA
                     LDDGELEFLEGRWLSIHVRDIDLQWFTSVVNGKLVVSQNAQADVSFSADVSDLLMIAA
                     RKQDPDTLFFQRRLVIEGDTELGLHVKNLMDAIELEQMPKALRMMLLQLADFVEAGMK
                     TAPETKQTSVGEPC"
     gene            9833..10813
                     /locus_tag="JN078_000114"
     CDS             9833..10813
                     /locus_tag="JN078_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017457364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HAY9039445.1"
                     /translation="MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTE
                     KKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEY
                     AAERYPNIERHVSVQASATNEEAINFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPL
                     EVFAFGSLCIMSEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLID
                     RYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQR
                     SPAYVSQVAKVWRQAIDRCKADPQSAWMETLGSMSEGTQTTLGAYHRKWQ"
     gene            10822..11700
                     /locus_tag="JN078_000115"
     CDS             10822..11700
                     /locus_tag="JN078_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312067.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HAY9039446.1"
                     /translation="MKYSLGPVLWYWPKETLEDFYQQAATSSADVIYLGEAVCSKRRA
                     TKVGDWLEMAKSLAGSGKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNM
                     CAERKLPFVAGHALNCYNAVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRN
                     QFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLN
                     GIQTMSGYVYNLGNELTSMQGLVDVVRLSPQGTDTFAMLDAFRANENGAAPLLLTANS
                     DCNGYWRRLAGLELQA"
     gene            11906..12913
                     /locus_tag="JN078_000116"
     CDS             11906..12913
                     /locus_tag="JN078_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="luciferase-like monooxygenase"
                     /protein_id="HAY9039447.1"
                     /translation="MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRY
                     WLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLY
                     PGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPG
                     YGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKP
                     YAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGV
                     QQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELL
                     G"
     gene            complement(13031..14275)
                     /gene="mtr"
                     /locus_tag="JN078_000117"
     CDS             complement(13031..14275)
                     /gene="mtr"
                     /locus_tag="JN078_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005131807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan permease"
                     /protein_id="HAY9039448.1"
                     /translation="MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWS
                     MAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYIL
                     TYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAK
                     VITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYY
                     GKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGV
                     LNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRLKTALLTFAPPV
                     VGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKRFGSPKFRVWGGKPMITLIL
                     VFGVGNALVHILSSFNLLPVYQ"
     gene            complement(14429..16318)
                     /locus_tag="JN078_000118"
     CDS             complement(14429..16318)
                     /locus_tag="JN078_000118"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417631.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH family ATP-dependent RNA helicase"
                     /protein_id="HAY9039449.1"
                     /translation="MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR
                     DVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR
                     GVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE
                     MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP
                     DISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALN
                     GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIG
                     RTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQ
                     QQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKR
                     EFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAI
                     ANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPH
                     TGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRR
                     FGGDA"
     gene            complement(16311..16391)
                     /gene="yrbN"
                     /locus_tag="JN078_000119"
     CDS             complement(16311..16391)
                     /gene="yrbN"
                     /locus_tag="JN078_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YrbN"
                     /protein_id="HAY9039450.1"
                     /translation="MKIADQFHDELCRLAAINFEAHVLHG"
     gene            complement(16498..17382)
                     /gene="nlpI"
                     /locus_tag="JN078_000120"
     CDS             complement(16498..17382)
                     /gene="nlpI"
                     /locus_tag="JN078_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020802045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpI"
                     /protein_id="HAY9039451.1"
                     /translation="MKPFLRWCFVATALTLAGCSNTSWRKSEVLAVPLQPTLQQEVIL
                     ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL
                     GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD
                     PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER
                     LKADATDNTSLAEHLSETNFYLGKYYLSLGDSDSATALFKLAVANNVHNFVEHRYALL
                     ELSLLGQDQDDLAESDQQ"
     gene            complement(17491..19626)
                     /gene="pnp"
                     /locus_tag="JN078_000121"
     CDS             complement(17491..19626)
                     /gene="pnp"
                     /locus_tag="JN078_000121"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312072.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HAY9039452.1"
                     /translation="MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTV
                     VGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPL
                     FPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ
                     YVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQN
                     INELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSE
                     TIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVL
                     PRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGM
                     VGSPKRREIGHGRLAKRSVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLAL
                     MDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSREGISALQMD
                     IKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIK
                     DVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRV
                     YTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ
                     GRIRLSIKEATEQSQPAAAPEAPAAEQGE"
     gene            complement(19874..20143)
                     /gene="rpsO"
                     /locus_tag="JN078_000122"
     CDS             complement(19874..20143)
                     /gene="rpsO"
                     /locus_tag="JN078_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HAY9039453.1"
                     /translation="MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFA
                     EHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQLIERLGLRR"
     gene            complement(20292..21236)
                     /gene="truB"
                     /locus_tag="JN078_000123"
     CDS             complement(20292..21236)
                     /gene="truB"
                     /locus_tag="JN078_000123"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HAY9039454.1"
                     /translation="MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHT
                     GALDPLATGMLPICFGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT
                     FSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITIYELLF
                     IRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEH
                     LRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP
                     LEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVEYPA"
     gene            complement(21236..21637)
                     /gene="rbfA"
                     /locus_tag="JN078_000124"
     CDS             complement(21236..21637)
                     /gene="rbfA"
                     /locus_tag="JN078_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001712908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HAY9039455.1"
                     /translation="MAKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMS
                     RDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNS
                     LVEGMRMSNLVTSVVKHDEERRVNPDDSKED"
     gene            complement(21801..24449)
                     /gene="infB"
                     /locus_tag="JN078_000125"
     CDS             complement(21801..24449)
                     /gene="infB"
                     /locus_tag="JN078_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HAY9039456.1"
                     /translation="MTDVTIKTLAAERQTSVERLVQQFADAGIRKSADDSVSAQEKQT
                     LIDHLNQKNSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERL
                     AAEEQARREAEESAKREAQQKAEREAAEQAKREAAEQAKREAAEKDKVSNQQDDMTKN
                     AQAEKARREQEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTDNAEPTEDSS
                     DYHVTTSQHARQAEDESDREVEGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRG
                     GKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAM
                     ATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHV
                     DHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARG
                     AQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQ
                     YGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFL
                     DKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLS
                     GVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVN
                     IVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNV
                     RADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKS
                     PKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIG
                     VKNYNDVRTGDVIEVFEIIEIQRTIA"
     gene            complement(24474..25961)
                     /gene="nusA"
                     /locus_tag="JN078_000126"
     CDS             complement(24474..25961)
                     /gene="nusA"
                     /locus_tag="JN078_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005131833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HAY9039457.1"
                     /translation="MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEID
                     VRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTF
                     DRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLELGNNAEA
                     VILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGE
                     EVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLW
                     DDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGW
                     ELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKEL
                     LEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGIDRDLAFKLAA
                     RGVCTLEDLAEQGIDDLADIEGVTDEKAGALIMAARNICWFGDEA"
     gene            complement(25989..26441)
                     /gene="rimP"
                     /locus_tag="JN078_000127"
     CDS             complement(25989..26441)
                     /gene="rimP"
                     /locus_tag="JN078_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004125659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HAY9039458.1"
                     /translation="MSTLEQKLTEMITAPVEALGFELVGIEFIRGHTSTLRIYIDSED
                     GINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLV
                     LRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF"
     gene            complement(26648..26724)
                     /locus_tag="JN078_000128"
     tRNA            complement(26648..26724)
                     /locus_tag="JN078_000128"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(26688..26690),aa:Met,seq:cat)
     gene            27072..28415
                     /gene="argG"
                     /locus_tag="JN078_000129"
     CDS             27072..28415
                     /gene="argG"
                     /locus_tag="JN078_000129"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HAY9039459.1"
                     /translation="MTTILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTAN
                     LGQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNT
                     TPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDT
                     DFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIVN
                     PIMGVKFWDESVKIPAEEVTVRFEQGHPVALNGKTFSNDVEMMLEANRIGGRHGLGMS
                     DQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQG
                     RWFDSQALMLRDSLQRWVASQITGEVTLELRRGNDYSILNTVSENLTYKPERLTMEKG
                     DSVFSPDDRIGQLTMRNLDITDTREKLFGYAKTGLLSSSATSGVPQVENMENKGQ"
     gene            complement(28423..30048)
                     /locus_tag="JN078_000130"
     CDS             complement(28423..30048)
                     /locus_tag="JN078_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HAY9039460.1"
                     /translation="MTVFNKFARSFKSHWLLYLCVIVFGITNLVASSGAHMVQRLLFF
                     VLTILVVKRISSLPLRLLVAAPFVLLTAADMSISLYSWCTFGTTFNDGFAISVLQSDP
                     DEVVKMLGMYIPYLCAFAFLSLLFWAVIIKYDVSLPTKKVTGILLLIVISGSLFSACQ
                     FAYKDAKNKKTFSPYILASRFATYTPFFNLNYFALAAKEHQRLLSIANTVPYFQLSVR
                     DTGIDTYVLIVGESVRVDNMSLYGYTRSTTPQVEAQRKQIKLFNQAISSAPYTALSVP
                     LSLTADSVLSHDIHNYPDNIINMANQAGFQTFWLSSQSAFRQNGTAVTSIAMRAMETV
                     YVRGFDELLLPHLSQALQQNTQQKKLIVLHLNGSHEPACSAYPQSSAVFQPQDDQDAC
                     YDNSIHYTDSLLGQVFELLKDRRASVMYFADHGLERDPTKKNVYFHGGREASQQAYHV
                     PMFIWYSPVLGDGVDRTTENNIFSTAYNNYLINAWMGVTKPEQPQTLEEVIAHYKGDS
                     RVVDANHDVFDYVMFRKEFTEDKQGNPPPEGQG"
     gene            complement(30507..30593)
                     /locus_tag="JN078_000131"
     tRNA            complement(30507..30593)
                     /locus_tag="JN078_000131"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(30557..30559),aa:Leu,seq:gag)
     gene            complement(30608..30940)
                     /gene="secG"
                     /locus_tag="JN078_000132"
     CDS             complement(30608..30940)
                     /gene="secG"
                     /locus_tag="JN078_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HAY9039461.1"
                     /translation="MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFG
                     SSGSGNFMTRMTALLATLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPA
                     KPTSDIPN"
     gene            complement(31168..32505)
                     /gene="glmM"
                     /locus_tag="JN078_000133"
     CDS             complement(31168..32505)
                     /gene="glmM"
                     /locus_tag="JN078_000133"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003905541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HAY9039462.1"
                     /translation="MSNRKYFGTDGIRGRVGDAPITPDFVLKLGWAAGKVLARHGSRK
                     IIISKDTRISGYMLESALEAGLAAAGLSALFTGPMPTPAVAYLTRTFRAEAGIVISAS
                     HNPFYDNGIKFFSIDGTKLPDAVEEAIEAEMEKEISCVDSAELGKASRIVDAAGRYIE
                     FCKATFPNELSLSELKIVVDCANGATYHIAPNVLRELGANVIAIGCEPNGVNINAEVG
                     ATDVRALQARVLAEKADLGIAFDGDGDRVIMVDHEGNKVDGDQIMYIIAREGLRQGQL
                     RGGAVGTLMSNMGLELALKQLGIPFARAKVGDRYVLEKMQEKGWRIGAENSGHVILLD
                     KTTTGDGIVAGLQVLAAMARNHMSLHDLCSGMKMFPQILVNVRYTAGSGDPLEHESVK
                     AVTAEVEAALGNRGRVLLRKSGTEPLIRVMVEGEDEAQVTEFAHRIADAVKAV"
     gene            complement(32498..33346)
                     /gene="folP"
                     /locus_tag="JN078_000134"
     CDS             complement(32498..33346)
                     /gene="folP"
                     /locus_tag="JN078_000134"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312083.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HAY9039463.1"
                     /translation="MKLFAQGTSLDLSHPHVMGILNVTPDSFSDGGTHNSLIDAVKHA
                     NLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWLSVDTSKPEV
                     IRESAKVGAHIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAE
                     VNRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPLLVGM
                     SRKSMIGQLLNVGPSERLSGSLACAVIAAMQGAHIIRVHDVKETVEAMRVVEATLSAK
                     ENKRYE"
     gene            complement(33436..35370)
                     /gene="ftsH"
                     /locus_tag="JN078_000135"
     CDS             complement(33436..35370)
                     /gene="ftsH"
                     /locus_tag="JN078_000135"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HAY9039464.1"
                     /translation="MAKNLILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNND
                     QVREARINGREINVTKKDSNRYTTYIPVQDPKLLDNLLTKNVKVVGEPPEEPSLLASI
                     FISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEA
                     KEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG
                     SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN
                     QMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVH
                     MRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMIEFEKAKDKI
                     MMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLP
                     EGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWG
                     FSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTD
                     NMDILHAMKDALMKYETIDAPQIDDLMARRDVRPPAGWEEPGASNNSGDNGSPKAPRP
                     VDEPRTPNPGNTMSEQLGDK"
     gene            complement(35470..36099)
                     /gene="rlmE"
                     /locus_tag="JN078_000136"
     CDS             complement(35470..36099)
                     /gene="rlmE"
                     /locus_tag="JN078_000136"
                     /EC_number="2.1.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uridine(2552)-2'-O)-methyltransferase
                     RlmE"
                     /protein_id="HAY9039465.1"
                     /translation="MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQ
                     SDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD
                     ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGS
                     FVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKP"
     gene            36225..36518
                     /gene="yhbY"
                     /locus_tag="JN078_000137"
     CDS             36225..36518
                     /gene="yhbY"
                     /locus_tag="JN078_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014833438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HAY9039466.1"
                     /translation="MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHH
                     ELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPTKERKISLPR"
     gene            complement(36675..37151)
                     /gene="greA"
                     /locus_tag="JN078_000138"
     CDS             complement(36675..37151)
                     /gene="greA"
                     /locus_tag="JN078_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006178768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HAY9039467.1"
                     /translation="MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKE
                     NAEYHAAREQQGFCEGRIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEE
                     QTYRIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL"
     gene            37399..38832
                     /gene="dacB"
                     /locus_tag="JN078_000139"
     CDS             37399..38832
                     /gene="dacB"
                     /locus_tag="JN078_000139"
                     /EC_number="3.4.16.4"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001212660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
                     /protein_id="HAY9039468.1"
                     /translation="MRFSRFIIGLTSCIAFSVQAANVDEYVTQLPAGANLALMVQKVG
                     ASAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLV
                     ARFGADPTLKRQDIRNMIATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCF
                     SAPPAAAIVDRNCFSVSLYSAPKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCE
                     LDVIPGDLNRFTLTGCLPQRSEPLPLAFAVQDGASYAGAILKDELKQAGITWSGTLLR
                     QTQVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSD
                     AVRQILRQQAGVDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPL
                     AGYDGSLQYRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAV
                     EPADQRNRRIPLVRFESRLYKDIYQNN"
     gene            complement(38872..40044)
                     /gene="cgtA"
                     /locus_tag="JN078_000140"
     CDS             complement(38872..40044)
                     /gene="cgtA"
                     /locus_tag="JN078_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Obg family GTPase CgtA"
                     /protein_id="HAY9039469.1"
                     /translation="MKFVDEASILVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGD
                     VWMEADENLNTLIDYRFEKSFRAERGQNGASRDCTGKRGKDVTIKVPVGTRVIDQGTG
                     ETMGDMTKHGQRLLVAKGGWHGLGNTRFKSSVNRTPRQKTNGTPGDKRELLLELMLLA
                     DVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNEKSFVVADIPGLI
                     EGAAEGAGLGIRFLKHLERCRVLLHLIDIDPIDGTDPVENARIIISELEKYSQDLAAK
                     PRWLVFNKIDLLDKAEAEEKAKAIAEALGWEDKYYLISAASGLGVKDLCWDVMTFIIE
                     NPVVQAEEAKQPEKVEFMWDDYHRQQLEEIAEEDDEDWDDDWDEDDEEGVEFIYKR"
     gene            complement(40060..41025)
                     /locus_tag="JN078_000141"
     CDS             complement(40060..41025)
                     /locus_tag="JN078_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012135318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HAY9039470.1"
                     /translation="MKQQAGIGILLALTTAICWGALPIAMKQVLEVMEPPTIVFYRFL
                     MASIGLGAILAVKKRLPPLRVFRKPRWLILLAVATAGLFGNFILFSSSLQYLSPTASQ
                     VIGQLSPVGMMVASVFILKEKMRSTQVVGALMLLSGLVMFFNTSLVEIFTKLTDYTWG
                     VIFGVGAATVWVSYGVAQKVLLRRLASPQILFLLYTLCTIALFPLAKPGVIAQLSHWQ
                     LACLIFCGLNTLVGYGALAEAMARWQAAQVSAIITLTPLFTLFFSDLLSLAWPDFFAR
                     PMLNLLGYLGAFVVVAGAMYSAIGHRIWGGLRKHTTVVSQPRAGE"
     gene            complement(41152..41409)
                     /gene="rpmA"
                     /locus_tag="JN078_000142"
     CDS             complement(41152..41409)
                     /gene="rpmA"
                     /locus_tag="JN078_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007369914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HAY9039471.1"
                     /translation="MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK
                     FHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE"
     gene            complement(41430..41741)
                     /gene="rplU"
                     /locus_tag="JN078_000143"
     CDS             complement(41430..41741)
                     /gene="rplU"
                     /locus_tag="JN078_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015960603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HAY9039472.1"
                     /translation="MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANG
                     EEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGIS
                     A"
     gene            42000..42971
                     /gene="ispB"
                     /locus_tag="JN078_000144"
     CDS             42000..42971
                     /gene="ispB"
                     /locus_tag="JN078_000144"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HAY9039473.1"
                     /translation="MNLEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIVSGGG
                     KRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAA
                     FGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITE
                     ENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNA
                     DGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQGNGRHLLEPVLEAMN
                     ACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIGLAHIAVQRDR"
     gene            43200..43478
                     /gene="sfsB"
                     /locus_tag="JN078_000145"
     CDS             43200..43478
                     /gene="sfsB"
                     /locus_tag="JN078_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator SfsB"
                     /protein_id="HAY9039474.1"
                     /translation="MESNFIDWHPPDIIAGLRKKGTSMAAESRRNGLSSSTLANALSR
                     PWPKGEMIIAKALGTDPWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK"
     gene            complement(43526..44785)
                     /gene="murA"
                     /locus_tag="JN078_000146"
     CDS             complement(43526..44785)
                     /gene="murA"
                     /locus_tag="JN078_000146"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HAY9039475.1"
                     /translation="MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNV
                     PKLKDVDTSMKLLSQLGAKVERNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVA
                     RFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVDGRLKGAHIVMDK
                     VSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGV
                     ERLGGGVYRVLPDRIETGTFLVAAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVG
                     EDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMH
                     VPELSRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRI
                     YHIDRGYERIEDKLRALGANIKRVKGE"
     gene            complement(44840..45094)
                     /gene="ibaG"
                     /locus_tag="JN078_000147"
     CDS             complement(44840..45094)
                     /gene="ibaG"
                     /locus_tag="JN078_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015585657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family iron metabolism protein IbaG"
                     /protein_id="HAY9039476.1"
                     /translation="MENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVK
                     KQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGF"
     gene            complement(45254..45547)
                     /gene="mlaB"
                     /locus_tag="JN078_000148"
     CDS             complement(45254..45547)
                     /gene="mlaB"
                     /locus_tag="JN078_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312097.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance protein MlaB"
                     /protein_id="HAY9039477.1"
                     /translation="MSESLSWMQTGDTLALSGELDQDVLLPLWEMREEAVKGITCIDL
                     SRVSRVDTGGLALLLQLIDLAKKQGNNVTLQGVNDKVYTLAKLYNLPADVLPR"
     gene            complement(45547..46182)
                     /gene="mlaC"
                     /locus_tag="JN078_000149"
     CDS             complement(45547..46182)
                     /gene="mlaC"
                     /locus_tag="JN078_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HAY9039478.1"
                     /translation="MFKRLMMVALLVIAPLSAATAADQTNPYKLMDEAAQKTFDRLKN
                     EQPQIRANPDYLRTIVDQELLPYVQVKYAGALVLGQYYKSATPAQREAYFAAFREYLK
                     QAYGQALAMYHGQTYQIAPEQPLGDKTIVPIRVTIIDPNGRPPVRLDFQWRKNSQTGN
                     WQAYDMIAEGVSMITTKQNEWGTLLRTKGIDGLTAQLKSISQQKITLEEKK"
     gene            complement(46201..46752)
                     /gene="mlaD"
                     /locus_tag="JN078_000150"
     CDS             complement(46201..46752)
                     /gene="mlaD"
                     /locus_tag="JN078_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HAY9039479.1"
                     /translation="MQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYA
                     TFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIR
                     TSGLLGEQYLALNVGFEDPELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNK
                     NSGDAPAAAPGNNETTEPVGTTK"
     gene            complement(46757..47539)
                     /gene="mlaE"
                     /locus_tag="JN078_000151"
     CDS             complement(46757..47539)
                     /gene="mlaE"
                     /locus_tag="JN078_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014071945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HAY9039480.1"
                     /translation="MLLNALASLGHKGIKTLRTFGRAGLMLFNALVGKPEFRKHAPLL
                     VRQLYNVGVLSMLIIVVSGVFIGMVLGLQGYLVLTTYSAETSLGMLVALSLLRELGPV
                     VAALLFAGRAGSALTAEIGLMRATEQLSSMEMMAVDPLRRVISPRFWAGVISLPLLTV
                     IFVAVGIWGGSLVGVSWKGIDSGFFWSAMQNAVDWRMDLVNCLIKSVVFAITVTWISL
                     FNGYDAIPTSAGISRATTRTVVHSSLAVLGLDFVLTALMFGN"
     gene            complement(47547..48356)
                     /gene="mlaF"
                     /locus_tag="JN078_000152"
     CDS             complement(47547..48356)
                     /gene="mlaF"
                     /locus_tag="JN078_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid ABC transporter ATP-binding protein
                     MlaF"
                     /protein_id="HAY9039481.1"
                     /translation="MEQSVANLVDMRDVSFTRGNRCIFDNISLTVPRGKITAIMGPSG
                     IGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNV
                     FDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA
                     LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAWIL
                     ADKKIVAHGSAQALQANPDPRVRQFLDGIADGPVPFRYPAGDYHADLLPGS"
     gene            48566..49543
                     /locus_tag="JN078_000153"
     CDS             48566..49543
                     /locus_tag="JN078_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/sodium antiporter"
                     /protein_id="HAY9039482.1"
                     /translation="MLLATALLIVGLLLVVYSADRLVFAASILCRTFGIPPLIIGMTV
                     VSIGTSLPEIIVSLAASLHEQRDLAVGTALGSNIINILLILGLAALVRPFTVHSDVLR
                     RELPLMLLVSVVAGSVLYDGQLSRSDGIFLLFLAVLWLLFIVKLARQAERQGTDSLTR
                     EQLAELPRDGGLPVAFLWLGIALIIMPVATRMVVDNATVLANYFAISELTMGLTAIAI
                     GTSLPELATAIAGVRKGENDIAVGNIIGANIFNIVIVLGLPALITPGEIDPLAYSRDY
                     SVMLLVSIIFALLCWRRSPQPGRGVGVLLTGGFIVWLAMLYWLSPILVE"
     gene            49557..50543
                     /gene="kdsD"
                     /locus_tag="JN078_000154"
     CDS             49557..50543
                     /gene="kdsD"
                     /locus_tag="JN078_000154"
                     /EC_number="5.3.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose-5-phosphate isomerase KdsD"
                     /protein_id="HAY9039483.1"
                     /translation="MSHVELQPGFDFQQAGKEVLAIERECLAELDQYINQNFTLACEK
                     MFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIA
                     ISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAP
                     TSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPH
                     VKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDGDLRRVFDMGVDVRQLSIADV
                     MTPGGIRVRPGILAVEALNLMQSRHITSVMVADGDHLLGVLHMHDLLRAGVV"
     gene            50564..51130
                     /gene="kdsC"
                     /locus_tag="JN078_000155"
     CDS             50564..51130
                     /gene="kdsC"
                     /locus_tag="JN078_000155"
                     /EC_number="3.1.3.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate-8-phosphatase KdsC"
                     /protein_id="HAY9039484.1"
                     /translation="MSKAGASLATCYGPVSADVIAKAENIRLLILDVDGVLSDGLIYM
                     GNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNK
                     LIAFSELLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIA
                     GGRGAVREVCDLLLLAQGKLDEAKGQSI"
     gene            51127..51702
                     /gene="lptC"
                     /locus_tag="JN078_000156"
     CDS             51127..51702
                     /gene="lptC"
                     /locus_tag="JN078_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HAY9039485.1"
                     /translation="MSKARRWVTIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKS
                     EHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAK
                     LTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSG
                     LKMRGNLRSKNAELIEKVRTSYEIQNKQTQP"
     gene            51671..52228
                     /gene="lptA"
                     /locus_tag="JN078_000157"
     CDS             51671..52228
                     /gene="lptA"
                     /locus_tag="JN078_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide ABC transporter
                     substrate-binding protein LptA"
                     /protein_id="HAY9039486.1"
                     /translation="MKFKTNKLSLNLVLASSLLAASIPAFAVTGDTDQPIHIESDQQS
                     LDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNG
                     KPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRV
                     TTVLVPSQLQDKNNKGQTPAQKKGN"
     gene            52235..52960
                     /gene="lptB"
                     /locus_tag="JN078_000158"
     CDS             52235..52960
                     /gene="lptB"
                     /locus_tag="JN078_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004091254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HAY9039487.1"
                     /translation="MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTT
                     TFYMVVGIVPRDAGNIIIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAV
                     LQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL
                     LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH
                     GTPTEILQDEHVKRVYLGEDFRL"
     gene            53008..54441
                     /gene="rpoN"
                     /locus_tag="JN078_000159"
     CDS             53008..54441
                     /gene="rpoN"
                     /locus_tag="JN078_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HAY9039488.1"
                     /translation="MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESN
                     PLLEQIDTHEEIDTSETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSG
                     DYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVPLED
                     ILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARL
                     IISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDV
                     LVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLE
                     SRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHS
                     PRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQG
                     IMVARRTVAKYRESLSIPPSNQRKQLV"
     gene            54464..54751
                     /gene="hpf"
                     /locus_tag="JN078_000160"
     CDS             54464..54751
                     /gene="hpf"
                     /locus_tag="JN078_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007369896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome hibernation promoting factor"
                     /protein_id="HAY9039489.1"
                     /translation="MQLNITGNNVEITEALREFVRAKFAKLEQYFDRINQVYVVLKVE
                     KVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH"
     gene            54869..55360
                     /gene="ptsN"
                     /locus_tag="JN078_000161"
     CDS             54869..55360
                     /gene="ptsN"
                     /locus_tag="JN078_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS IIA-like nitrogen regulatory protein PtsN"
                     /protein_id="HAY9039490.1"
                     /translation="MTNNDTTLQLSSVLNRECTRSRVHCQSKKRALEIISELAAKQLS
                     LPPQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAIDNQ
                     PVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQIITDTEGTP
                     DEA"
     gene            55406..56260
                     /gene="rapZ"
                     /locus_tag="JN078_000162"
     CDS             55406..56260
                     /gene="rapZ"
                     /locus_tag="JN078_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HAY9039491.1"
                     /translation="MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTL
                     ADREISAAVSIDVRNMPESPEIFEQAMSNLPDAFSPQLLFLDADRNTLIRRYSDTRRL
                     HPLSSKNLSLESAIDKESDLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKREREL
                     TMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNF
                     IYQTRSYLELWLPMLETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRH
                     RTLEKRKP"
     gene            56257..56529
                     /gene="npr"
                     /locus_tag="JN078_000163"
     CDS             56257..56529
                     /gene="npr"
                     /locus_tag="JN078_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000216792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS phosphocarrier protein NPr"
                     /protein_id="HAY9039492.1"
                     /translation="MTVKQTVEITNKLGMHARPAMKLFELMQGFDAEVLLRNDEGTEA
                     EANSVIALLMLDSAKGRQIEVEATGPQEEEALAAVIALFNSGFDED"
     gene            56743..57375
                     /gene="yrbL"
                     /locus_tag="JN078_000164"
     CDS             56743..57375
                     /gene="yrbL"
                     /locus_tag="JN078_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoP regulatory network protein YrbL"
                     /protein_id="HAY9039493.1"
                     /translation="MIRLSEQSPLGTGRHRKCYAHPEDAQRCIKIVYHRGDGGDKEIR
                     RELKYYAYLGRRLKDWSGIPRYHGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQCR
                     YEEDIAQLRQLLKQLKRYLQDNRIVTMSLKPQNILCHHISESEVIPVVCDNIGESTLI
                     PLATWSKWCCLRKQERLWKRFIAQPALAIALQKDLQPRESKTLALTSREA"
     gene            complement(57372..58100)
                     /gene="mtgA"
                     /locus_tag="JN078_000165"
     CDS             complement(57372..58100)
                     /gene="mtgA"
                     /locus_tag="JN078_000165"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HAY9039494.1"
                     /translation="MSKSRLTVFSFVRRFLLRLMVVLAVFWGGGIALFSVAPVPFSAV
                     MVERQVSAWLHGNFRYVAHSDWVSMDQISQWMGLAVIAAEDQKFPEHRGFDVASIEKA
                     LAHNERNENRIRGASTISQQTAKNLFLWDGRSWVRKGLEAGLTLGIETVWSKKRILTV
                     YLNIAEFGDGVFGVEAAAQRYFHKPASKLTRSEAALLAAVLPNPLRFKVSSPSGYVRS
                     RQAWILRQMYQLGGEPFMQQHQLD"
     gene            complement(58097..58750)
                     /gene="elbB"
                     /locus_tag="JN078_000166"
     CDS             complement(58097..58750)
                     /gene="elbB"
                     /locus_tag="JN078_000166"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709007.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenoid biosynthesis glyoxalase ElbB"
                     /protein_id="HAY9039495.1"
                     /translation="MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ
                     QVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLS
                     NFATLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTA
                     EVLEEMGAEHVPCPVDDIVVDEDNKIVTTPAYMLAQNIAEAASGIDKLVSRVLVLAE"
     gene            complement(58980..61316)
                     /gene="arcB"
                     /locus_tag="JN078_000167"
     CDS             complement(58980..61316)
                     /gene="arcB"
                     /locus_tag="JN078_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobic respiration two-component sensor
                     histidine kinase ArcB"
                     /protein_id="HAY9039496.1"
                     /translation="MKQIRLLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTM
                     VLHGQVESIDVIRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRERDL
                     SLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKEREETQIQLEQQSSFLRSF
                     LDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLKPADVYSPEAAAKVIETDEK
                     VFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLMGFGRDITERKRYQDAL
                     ERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNI
                     FNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQV
                     ITDGTRLRQILWNLISNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKI
                     FAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPSV
                     AEEVDDAFDEDDMPLPALNVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFK
                     PGEYDLVLLDIQLPDMTGLDISRELTKRYPREDLPPLVALTANVLKDKQEYLNAGMDD
                     VLSKPLSVPALTAMIKKFWDTQDDEESTVTTEENSKSEALLDIPMLEQYLELVGPKLI
                     TDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQS
                     PDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKATKK"
     gene            complement(61412..62341)
                     /locus_tag="JN078_000168"
     CDS             complement(61412..62341)
                     /locus_tag="JN078_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312117.1"
                     /note="This family includes YhcC from E. coli K-12, an
                     uncharacterized radical SAM protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01212 family radical SAM protein"
                     /protein_id="HAY9039497.1"
                     /translation="MQLQKLVNMFGGDLTRRYGQKVHKLTLHGGFSCPNRDGTIGRGG
                     CTFCNVASFADEAQQHRSIAEQLAHQANLVNRAKRYLAYFQAYTSTFAEVQVLRSMYQ
                     QAVSQANIVGLCVGTRPDCVPDAVLDLLCEYKDQGYEVWLELGLQTAHDKTLHRINRG
                     HDFACYQRTTQLARQRGLKVCSHLIVGLPGEGQAECLQTLERVVETGVDGIKLHPLHI
                     VKGSIMAKAWEAGRLNGIELEDYTLTAGEMIRHTPPEVIYHRISASARRPTLLAPLWC
                     ENRWTGMVELDRYLNEHGVQGSALGRPWLPPTE"
     gene            63016..67476
                     /gene="gltB"
                     /locus_tag="JN078_000169"
     CDS             63016..67476
                     /gene="gltB"
                     /locus_tag="JN078_000169"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HAY9039498.1"
                     /translation="MLYDKSLERDNCGFGLIAHIEGEPSHKVVRTAIHALARMQHRGA
                     ILADGKTGDGCGLLLQKPDRFFRIVAQERGWRLAKNYAVGMLFLNKDPELAAAARRIV
                     EEELQRETLSIVGWRDVPTNEGVLGEIALSSLPRIEQIFVNAPAGWRPRDMERRLFIA
                     RRRIEKRLEADKDFYVCSLSNLVNIYKGLCMPADLPRFYLDLADLRLESAICLFHQRF
                     STNTVPRWPLAQPFRYLAHNGEINTITGNRQWARARTYKFQTPLIPDLHDAAPFVNET
                     GSDSSSMDNMLELLLAGGMDIIRAMRLLVPPAWQNNPDMDPELRAFFDFNSMHMEPWD
                     GPAGIVMSDGRFAACNLDRNGLRPARYVITKDKLITCASEVGIWDYQPDEVVEKGRVG
                     PGELMVIDTRSGRILHSAETDDDLKSRHPYKEWMEKNVRRLVPFEDLPDEEVGSRELD
                     DDTLASYQKQFNYSAEELDSVIRVLGENGQEAVGSMGDDTPFAVLSSQPRIIYDYFRQ
                     QFAQVTNPPIDPLREAHVMSLATSIGREMNVFCEAEGQAHRLSFKSPILLYSDFKQLT
                     TMKEEHYRADTLDITFDVTKTTLEATVKELCDKAEKMVRSGTVLLVLSDRNIAKDRLP
                     VPAPMAVGAIQTRLVDQSLRCDANIIVETASARDPHHFAVLLGFGATAIYPYLAYETL
                     GRLVDTHAIAKDYRTVMLNYRNGINKGLYKIMSKMGISTIASYRCSKLFEAVGLHDDV
                     VGLCFQGAVSRIGGASFEDFQQDLLNLSKRAWLARKPISQGGLLKYVHGGEYHAYNPD
                     VVRTLQQAVQSGEYSDYQEYAKLVNERPATTLRDLLAITPGENAVNIADVEPASELFK
                     RFDTAAMSIGALSPEAHEALAEAMNSIGGNSNSGEGGEDPARYGTNKVSRIKQVASGR
                     FGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSVPGVTLISPPPHH
                     DIYSIEDLAQLIFDLKQVNPKAMISVKLVSEPGVGTIATGVAKAYADLITIAGYDGGT
                     GASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKTGVDIIKAAILGAE
                     SFGFGTGPMVALGCKYLRICHLNNCATGVATQDDKLRKNHYHGLPFKVTNYFEFIARE
                     TRELMAQLGVTRLVDLIGRTDLLKELDGFTAKQQKLALSKLLETAEPHPGKALYCTEN
                     NPPFDNGLLNAQLLQQAKPFVDERQSKTFWFDIRNTDRSVGASLSGYIAQTHGDQGLA
                     ADPIKAYFNGTAGQSFGVWNAGGVELYLTGDANDYVGKGMAGGLIAIRPPVGSAFRSH
                     EASIIGNTCLYGATGGRLYAAGRAGERFGVRNSGAITVVEGIGDNGCEYMTGGIVCIL
                     GKTGVNFGAGMTGGFAYVLDESGDFRKRVNPELVEVLNVDDLAIHEEHLRGLITEHVQ
                     HTGSQRGEEILANWSTFATKFALVKPKSSDVKALLGHRSRSAAELRVQAQ"
     gene            67489..68907
                     /locus_tag="JN078_000170"
     CDS             67489..68907
                     /locus_tag="JN078_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001540975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HAY9039499.1"
                     /translation="MSQNVYQFIDLQRVDPPKKPLKIRKIEFVEIYEQFSEGQAKAQA
                     DRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDR
                     LCEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLA
                     CADVLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTE
                     VGRDVQLDDLLSDYDAVFLGVGTYQSMRGGLENKDADGVYAALPFLIANTKQLMGFGE
                     TRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENMPGSRREVKN
                     AREEGVEFKFNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPA
                     DAVIMAFGFRPHNMEWLAKHSVELDSQGRIIAPEGSDNAFQTSNPKIFAGGDIVRGSD
                     LVVTAIAEGRKAADGIMNWLEV"
     gene            69091..69570
                     /locus_tag="JN078_000171"
     CDS             69091..69570
                     /locus_tag="JN078_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001613919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HAY9039500.1"
                     /translation="MESLSERTSTGYQQIHDGIIHLVDSARTETVRSVNALMTATYWE
                     IGRRIVEFEQGGEARAAYGAQLIKRLSKDLSLRYKRGFSAKNLRQMRLFYLFFQHVEI
                     RQTVSGELTPLGIPQTPSAEFPSAKIWQTLSAKLRGCLIFPQLLYCISYFRFVYSCK"
BASE COUNT        17019 a        18896 c        17296 g        16413 t
ORIGIN      
        1 tgacagcctg gatattaaaa ccacattaca ggcaaacgac attccaggac tcacaaccga
       61 ccaggttgtc tctgttaaca cccgattcac acagataaaa agcagcaccg tatattctgc
      121 tgcaacccaa acgggtgttt gccagggtga cacgtctcgt tatggacccg ttaatattgg
      181 tgcaaatacc acctttaccc tgtatgtcac caagccattt ctcggctcga tgaccattcc
      241 gaaaacggat attgccgtca ttaaaggcgc gtgggtcgat ggaatgggaa gcccgtctac
      301 aggtgacttc catgatttag tcaagttatc gattcaggga aatctcaccg ccccacagtc
      361 gtgcaaaatt aatcagggcg atgttattaa ggttaatttt ggattcatca atggtcagaa
      421 gtttaccacc cgcaatgcca tgccagacgg ttttactcca gtagactttg atatcactta
      481 tgactgtggt gatacttcaa agattaaaaa ctcgttgcaa atgcgcatcg acggtacaac
      541 tggggtagta gaccagtaca acctggtcgc caggcgaaga agttcagaca atgtgcccga
      601 tgtcggtatt cgtattgaaa atctcggcgg cggagttgca aatattcctt ttcagaacgg
      661 tatccttccc gttgatcctt ccgggcatgg caccgtcaat atgcgcgcct ggccagttaa
      721 tctggtcggt ggtgagctgg aaacaggaaa atttcagggc acagccacca ttaccgtcat
      781 ggtgcggtaa aagaagacgt tgcgttttga ttaacgcaac gcttcggcac tgttacccct
      841 gctgctccag cgcatactta tacagcgcat ttttcttcac gccatgaatt tctgcgacca
      901 gcgccgccgc ttttttcagc ggcagttctg cctgtagcag cgccagcgtg cgcagggcat
      961 cggcgggtaa gtcttcttcc tgtgctttat gaccttcgac aatcagcacc atttcgcctt
     1021 tgcgacggtt ttcatcttcc tttacccacg ccagcagttc gccaacgggc gcgccgtgaa
     1081 tggtttccca ggttttggtc agctcacgcg ccagaaccac gtagcgggat tcgcctaata
     1141 ccgcaacgat atcttccagg ctatctaaca gacggtgggt ggattcataa aaaatcagcg
     1201 tgcgcggctc cgcttcaatg gcttttagcg catcacggcg gccttttgat ttggcaggta
     1261 aaaagccttc gtaacagaaa cggtcagagg gtaaacccgc ggcgcttaac gcagtgatag
     1321 cagcacacgg cccgggtagc ggcaccacgc gaatccccgc ttcacggcag gtacgcacca
     1381 gatggtagcc aggatcgtta attagcggcg ttccggcatc ggaaaccagc gcaatgtttt
     1441 gcccctcttg cagcttcgcc agcagcgttt cggctttttg ttgttcgtta tggtcgtgca
     1501 gcgcaaacaa ccgggcatta atcccaaaat gttgcagcaa taaaccggtg tgacgagtat
     1561 cctcggcggc aatcagatca acggcctgta atacctctaa cgcacgctgg gtgatatccg
     1621 ccagattgcc gattggcgtc ggtacaatgt aaagctggcc ctgagaatta tccgccgatt
     1681 ggtgttgttt cattgtgtcg tccgtattgc cgatttaata ttgagcattg cgtaaaaaaa
     1741 tatcactgga tacattatgg taccctcaac attttctcgt ttgaaagccg cgcgttgtct
     1801 gcctgttgtt ctggcagccc tgattttcgc cggttgtggc acccatactc ccgatcagtc
     1861 cactgcttat atgcagggca cggcgcaggc tgattctgcc ttttatcttc agcagatgca
     1921 gcaaagctct gatgatacca ggatcaactg gcaattactc gccattcgtg cactggtgaa
     1981 agaaggtaaa accgggcagg cggttgagtt gtttaaccaa ctaccgcaag aactgaacga
     2041 ttctcagcgt cgcgagaaaa cactgctggc ggtagagatt aaactggcgc agaaagattt
     2101 tgctggcgcg caaaacttgc tggcgaaaat cacacctgcc gatttagaac aaaaccagca
     2161 agcgcgttac tggcaggcaa aaatcgatgc cagccagggg cgtccttcca ttgatttact
     2221 gcgcgcgtta attgctcagg aaccgctgct cggcgcgaaa gaaaaaaagc agaatattga
     2281 tgccacctgg caggcgctct cctccatgac tcaggaacag gcgaatacgc tggtgatcaa
     2341 cgccgacgaa aatattctgc aaggctggct ggatctgcag cgcgtctggt ttgataaccg
     2401 taacgatccc gatatgatga aagccgggat cgccgactgg cagaaacgtt atccgaacaa
     2461 tccgggcgcg aaaatgctgc caacgcagtt ggttaacgta aaagcgttta aaccagcctc
     2521 gaccaacaaa atcgccctgc tgttgccgct gaatggccag gcagcggtat ttggtcgcac
     2581 tattcagcaa ggctttgaag cggcgaaaaa tatcggcact cagccagtgg cggctcaggt
     2641 agctgccgca gacgtagcag aacaacctca gccgcaaact gcggatggcg ttgccagccc
     2701 ggcacaagcc tcggttagcg atctgaccgg tgatcagcct gcggcccagc cggtgcctgt
     2761 aagcgccccg gcgacaagca ccgcagcggt aagcgcaccc gcaaatccat ccgcagagct
     2821 gaaaatctac gatacctcat cacaaccact tagccagatc ttaagccagg ttcagcagga
     2881 tggcgcgagt attgtggttg gtccgttgct gaaaaataac gttgaagagt tgcttaagag
     2941 caacaccccg ctgaacgtgc tggtactgaa ccagccggag aatatcgaaa accgcgtcaa
     3001 tatttgttac ttcgcgcttt caccggaaga cgaagcgcgc gatgcagcgc gtcatattcg
     3061 tgaccagggt aaacaagcgc cgctggtgct gatcccacgc agttcattgg gcgatcgcgt
     3121 agccaatgcg tttgcgcagg agtggcagaa actgggcggc ggcaccgttc tgcaacaaaa
     3181 atttggttcc accagcgaat tacgcgcggg tgttaacggc ggttctggta tcgctttaac
     3241 gggtaccccg attactccca gagcgacaac cgactccggc atgacgacca acaatccaac
     3301 gctgcaaacc atgccaaccg atgaccagtt caccaataat ggcggtcgtg tcgatgcggt
     3361 gtacattgtg gcaacgccgg gtgaaatcgc ttttatcaaa ccgatgatcg ccatgcgtaa
     3421 cggtagccag agcggtgcaa tgctgtacgc cagctcccgc agcgcacaag gcaccgcagg
     3481 cccggatttc cgtctggaga tggaaggttt gcagtacagc gaaatcccga tgctggcggg
     3541 cggtaatctg ccgttaatgc agcaggcact cagcgcggtg aataacgatt attcactggc
     3601 tcgcatgtat gcgatgggcg tcgatgcctg gtcgctggca aatcatttct cacaaatgcg
     3661 ccaggttcag ggttttgaaa tcaacggtaa taccggaagc ctgacggcaa acccggattg
     3721 cgtgattaac aggaagttat catggctaca gtaccaacaa ggtcaggtag tccccgccag
     3781 ttaaccacca aacagaccgg cgatgcgtgg gaagtacaag cgcgtcgctg gctggaaggc
     3841 aaaggactgc gatttgtcgc cgctaacgtg aacgagcgtg gcggtgagat cgatctgata
     3901 atgcgtgaag gctggaccac cgtttttgtc gaggtgcgtt accgccgctc tgcgctttat
     3961 ggcggcgcgg cagccagtgt gacccgcagc aaacaacaca aattattaca gactgcccgc
     4021 ttgtggctcg cgcgtcataa tgggagtttt gatactgtgg attgccggtt cgatgtggta
     4081 gccttcaccg ggaatgaggt tgagtggatt aaggatgcct ttaatgacca ctcataatta
     4141 aggtttaagg attagcgtgc aagaaagaat taaagcttgc ttcactgaaa gcattcaaac
     4201 tcaaattgcg gcggcagagg cgcttccgga tgccatctcc cgtgcagcca tgacgctggt
     4261 tcagtctctg ctcaatggca acaaaatcct ctgttgtggt aatggaactt ccgctgccaa
     4321 tgcacagcat tttgctgcca gcatgatcaa ccgtttcgaa acggagcggc ccagcttacc
     4381 tgccattgca ctaaatactg ataatgttgt cttaacggcg attgccaacg atcgcttaca
     4441 tgatgaagtg tatgcaaaac aggtgcgggc gctgggtcat gcgggagatg tattgttagc
     4501 catttccacc cgtggcaaca gccgcgatat tgttaaagca gttgaagccg ccgttacgcg
     4561 tgatatgacc attgtggcat tgaccggcta tgacggcggc gaacttgcag gtttgttagg
     4621 gccacaggat gtggagatcc gcattccttc gcatcgtagt gctcgcattc aggaaatgca
     4681 tatgctgacg gtaaattgcc tgtgcgatct gatcgataac acgcttttcc ctcaccagga
     4741 tgattaagga gaatacatga aggcattatc gccaatcgca gtccttattt ccgcgctgct
     4801 gttgcaaggt tgtgttgccg ctgccgtagt gggtaccgct gctgtgggta ccaaagccgc
     4861 aactgaccca cgcagtgtcg gtacccaggt ggacgatggt accctggaag tgcgcgtgaa
     4921 cagcgcattg tcgaaagacg aacagattaa gaaagaaacc cgtattaatg tcacggcgta
     4981 tcagggcaaa gtgctgctgg ttgggcagtc accaaatgct gaactttcgg ctcgcgccaa
     5041 acagattgct atgggcgtag acggtgccaa cgaagtgtat aacgagattc gtcagggcca
     5101 gccgattggt ctgggcgaag catctaacga tacgtggatc accaccaaag tgcgttcgca
     5161 gctcttaacc agcgacctgg tgaaatcgtc caacgtgaaa gtgaccaccg aaaacggtga
     5221 agtgttcctg atggggctgg tgactgaacg tgaagcgaaa gcggcggcag atattgccag
     5281 ccgggtgagc ggcgtaaagc gggtaaccac agcgtttacg tttattaaat agcagcccct
     5341 tgtaatgcct gatgcgacgc ttgccgcgtc ttatcaggcc tacaacgatg caaaccgtag
     5401 gtcggataag gcgtttacgc cgcatccgac atgttttccc tcaaatcaga acaacagcgc
     5461 cagcccgccg acaatcacac cagacactgc caccatcgcc cctgtcagcc ataaggcttt
     5521 cgccgggaac gctttgcgca gcataatcag tgacggcaaa ctcactgccg ggagcgtcat
     5581 caacaatgcc agcgccggag cggttcccat acctgccagc atcatcgttt gtacaatcgg
     5641 aatttctgct gccgtgggaa tgacaaacaa gcatcctgct accgccatcg ccaccaccca
     5701 catcaggctg ttatcgacag caccatcggc atgggggaat aaccagacgc gtgcggcacc
     5761 caacaccagt actgcaagga tgtaaaccgg gatcgtactc cagaaaagtg tccatagcgc
     5821 cctgccccag cggctaaaaa aaccgctccg tgcttccggt atgtcaattt cgaccggtgc
     5881 ctgcgtttgc ggtgtttcac gcacccattt ttgcaccagc gtcgcaatca gcaacaccat
     5941 caccagcccg gccaccagac aaatcgccgc aaaaccccag ccgaggacaa accccataaa
     6001 caccagcgtc gccgggttta acaccggatt gcccatccag aatgccagcg caccgcccat
     6061 cgatacctgt tggcgacgca tccccgccgc gaccggagcc gcacagcagg tacacatcat
     6121 gcccggcagc gaaaacagcg ttcccagcag cgtgccgcga aagcgcgatt gcccaagcgt
     6181 acgcaacaac cagtcacgcg ggatcagcac ctgaatcaac gaaccgagga tcacccccag
     6241 caccgccgct ttccatactg cgaggaaata gatcatcgcg taatccaacg ccgcttgcca
     6301 cggattagca tccgcctgcg caaggataga tttaccgata ctgtgggttt cggctgcagt
     6361 aaacgctttg ccgtagtaat gttgccattt cacataccag agaccggcaa tgacaacgag
     6421 aaagaaaagc gcgggtttcc accactgaat gggtgttgcc gcctgagatg aagactgacc
     6481 agtcatagca ttccctagga ataagttatg ataattgagc gcgtgaatat tacgctcact
     6541 atcaattctt gggaataatt attcagctct tttgcgtaat tctgaagagc ttaaaatcgt
     6601 cacgccttca tgctcaggcc gcatcgcctc tgccagcatg acccgcgcca cgtctctcgc
     6661 atcaatggat ttccagttac ctggtaacaa acggaacagc ggcgcaaaaa gcgtttcgtt
     6721 catccgctgt ttgctacgat cgcccagtaa catcgacggg cgagcaatgg tcaatttcgg
     6781 ccagttctgg gcaattaatg cttcttccat ctcccctttg acgcggttat agaaaaacgg
     6841 cgagtgggca ttggccccca tagcactgac caccagcata tgctgcgcgc ccagccgccg
     6901 cccggttaat gcggtatcca ctaccagcgt gtaatcggca tgaataaacg cctctttgct
     6961 ccccgcttct cgccgcgtgg tgccgagaca acaaaacaca atgtcgatgg gttcggtgac
     7021 ctgcgccaac gcgtcactca gttgcggatc atggggatta aacaccccgg gcatatcgcc
     7081 caacggacgt cgcgtcggcg cagcaatggc gttaactttc ggttcattaa tcaacatccg
     7141 cagcaggtga ccgcccacca gccccgttgc gcctgtaatc agtacctgac tcatcttcgc
     7201 tcctttacag aattgtctgc cttgcgctcc acggctcatg caccagtctt aatagaccat
     7261 gaggtaatta tccccgattg tgggaaattc gcctcatcca atgcaacaac gcggaggaag
     7321 catgagtaag aaaattgccg ttttaatcag tgatgaattt gaggattcag aatttacttc
     7381 acccgcagac gagttccgta aagccggaca cgaagtaatt accattgaaa agcaagcggg
     7441 taaaacggtg aaaggcaaaa aaggagaagc cagcgtgacc atcgataaat ccatcgatga
     7501 agtgacgcca gcggagtttg atgccctgct gctaccgggc ggccattcac cggattatct
     7561 gcgtggggac aaccgttttg tcacctttac ccgtgatttt gtgaatagcg gcaaacctgt
     7621 tttcgccatc tgtcacggtc cgcagctgct gatcagcgcc gatgtgattc gggggcgcaa
     7681 actgaccgca gttaaaccga tcattattga tgttaaaaat gcgggcgcgg aattttacga
     7741 tcaggaagtc gtggttgata aagatcagct ggttaccagc cggacaccgg acgatctgcc
     7801 agcgtttaac cgcgaggcgt tacgcctgct cggtgcctga gtcgcgtagc caaatcattt
     7861 ttttaccaaa gcccagcgtg ttgtcggtga atttgatttc atcgagccgg atttcccaca
     7921 ccggggccga cagcattctg gcaaccggaa agcgatgatt gtacgccttg cgcgcgaggt
     7981 cgctttcctc accttccagc ctgcggatct cacctttaaa ctgcacaccg cgaattaacg
     8041 ctaccgtttt cggctgaccg tttaccgttc cggcaaccgc agcctgcggc ccactcatct
     8101 gcgcgtggcg cgttttttct tccgtcaaaa tgtagaaggc gactttctgc gcatcaaaca
     8161 gataaaaagc attagcgcac cacagttccc cttcctgctg cacacaccag gtgacaacat
     8221 gttgttttgc caaccaacgg ctgatggtga tgagtgtttc cattgctgtt ctcttttata
     8281 ctgtgggcct gaccttaaca tgcgacgcag acgatgacac cctggtttct ttacttgatc
     8341 cgtaccgccg acaataagct ttataccggg atcaccacgg atgtcgaacg ccgctatcag
     8401 cagcaccaaa gcggcaaagg ggcgaaagca ctgcgcggga aaggagaact gacgctggcg
     8461 ttttctgcgc cagtgggcga ccgttcgctg gcactacggg cggaatatcg cgttaagcaa
     8521 ctgaccaaac ggcaaaaaga gcgtctggta gcggaaggcg cagggtttgc agaactgttg
     8581 agcagcctgc aaaccccgga gattaaaagc gattgaaatg ctcgtgatac tcaaccagac
     8641 cggttacgcc attcagcgcg tcatccgcta aacgatgtac ctggaaggcg ctttcagtgc
     8701 ccggccagcg gcaacgcaga tcgtgatgcg ccgccagttc aaagccgaaa cgactgtaca
     8761 gcgccggatc gcccagcgtc accactgcgg catagccgaa ctcattaagc gaatcgagtc
     8821 cttcatagac cagttggcgt gccagcccct gtccacggta tttttcatca accgccaacg
     8881 gtgccatgcc gacccattgc aggtcttcgc cctgcacatc aaccggacta aatgccacat
     8941 agccaatgac ctgaccttcg tcatctgtcg ccaccagccc cagcgtcaga aagccatctt
     9001 cacgcagatc gtgaaccagc ttcgcttccg catcactttc gaatgagcga cgcagcaggg
     9061 catcaatacc cggcgcatca atgggaattt ctactcgaat tagcatggtt cacctaccga
     9121 tgtctgtttg gtttcaggcg cggttttcat tcccgcctca acaaaatccg ccagttgcag
     9181 cagcatcatg cgtaaggctt tcggcatttg ctccagttca atggcgtcca tcaggttttt
     9241 cacatgcagc cccagctccg tatcgccttc aatcaccagc cgacgctgga agaagagcgt
     9301 atctggatct tgtttacgag ccgcaatcat cagcagatcg ctgacgtcgg cactaaaact
     9361 cacatcagct tgcgcgttct ggctgaccac cagtttgcca ttcaccaccg aggtaaacca
     9421 ttgcaggtca atatcacgca catgaatact taaccagcgg ccttcaagaa actccagctc
     9481 gccatcatcc agcgcctgac ggaattgcca gcttaagacc tgctcaagaa cctggcgttt
     9541 tagcgcaaat ggcgtcagtt ttaccggtac actcaacaga gatggcccca aatgcacaat
     9601 acgggaacga agtttatcca acacgagttt tactccctgt ttcaacaatc atcctatttt
     9661 gccatatcag aaaaataaca tagcggtata aatcaacaat tccatatgaa attgctgcta
     9721 ccaccaatac aactttaact gccttaaatc aaaaattgtc gcagcaaggt taactaaaat
     9781 cccagttcgt taacattttt gcgttttgat agcgcaacct tcaggaaaaa ttatggagct
     9841 gctctgccct gccggaaatc tcccggcgct taaggcggcc atcgaaaacg gcgcagatgc
     9901 tgtttatatc gggctaaaag atgataccaa tgcccgtcac ttcgccggcc ttaactttac
     9961 cgagaaaaaa ttgcaggaag cggtgagttt tgtccatcaa catcgccgca aacttcacat
    10021 cgcgattaac acttttgcgc atccggacgg ttacgcccgt tggcagcgcg ccgtggatat
    10081 ggcggcgcag ctgggtgccg acgcgctgat cctcgccgac ctcgccatgc tggaatacgc
    10141 cgccgagcgt tatccgaata ttgagcgcca cgtatcggtg caggcttcgg cgaccaatga
    10201 agaggcgatt aacttttatc atcgccattt tgacgttgcc cgcgtggtgc tgccgcgcgt
    10261 gttgtcgatt catcaggtga aacagctggc acgggtcaca cctgtaccac tggaagtgtt
    10321 tgctttcggc agcctgtgca ttatgtcgga aggccgttgc tatctgtcgt cgtatctgac
    10381 gggtgagtcg cctaacaccg tgggcgcgtg ttctccggcc cgtttcgtgc gctggcaaca
    10441 aacgccgcag gggctggaat cccgcctgaa cgaagtgctg atcgaccgtt atcaggacgg
    10501 cgaaaacgca ggttatccga cgctgtgtaa agggcgttat ctggtggacg gcgagcgcta
    10561 tcacgcgctg gaagaaccaa ccagtctcaa taccctggaa ctgctgccgg agttaatggc
    10621 ggcgaatatt gcttcggtga aaattgaagg ccgccagcgt agcccggcgt atgtcagcca
    10681 ggtggcgaaa gtctggcgtc aggctatcga ccgttgtaag gccgatccgc aaagcgcgtg
    10741 gatggagacg ctcgggtcga tgtccgaagg cacgcagacc acccttggcg cgtatcaccg
    10801 taaatggcag tgagaagagc aatgaaatat tccttagggc cagtgctgtg gtactggcca
    10861 aaagagacgc tggaagattt ttatcagcag gccgccacca gcagcgccga cgtgatttat
    10921 cttggtgaag cggtatgcag caagcgccgg gcaaccaaag ttggcgactg gctggagatg
    10981 gcaaaatcgc tcgccggaag tggcaagcag attgtgctct ccacgctggc gctggtgcag
    11041 gcatcctctg aactgggcga actgaaacgc tatgttgaga acggtgagtt tctgattgaa
    11101 gccagcgatc tcggcgtggt gaatatgtgc gctgaacgca aactgccgtt cgtcgccggg
    11161 cacgcgctga actgctacaa cgcggtgacg ctgaaaatat tgctcaaaca gggcatgatg
    11221 cgctggtgta tgccggtgga gctttcccgc gactggctgg tgaatctgct taatcagtgc
    11281 gatgagctgg gcattcgcaa ccagtttgaa gtggaagtcc tgagctacgg tcatctaccg
    11341 ctggcctact ccgctcgctg ctttaccgcg cgttcggaag accgcccgaa agatgagtgt
    11401 gaaacctgct gcattaagta tccgaacggg cgcaacgtgc tgtcgcagga aaaccaacaa
    11461 gtgtttgtac tcaatggcat tcagaccatg agcggctacg tttacaacct cggtaacgag
    11521 ctgacatcca tgcagggatt ggttgatgtg gtccgcctgt caccgcaggg tactgacact
    11581 ttcgcgatgc tcgacgcctt ccgcgctaat gaaaatggcg ctgcgccact attgttgacg
    11641 gcaaacagcg actgtaacgg ctactggcgg cggctggcag gactggagct gcaagcctaa
    11701 gtaaatatgc tcgtcatact tcaagttgca tgtgctgcat ctgcattcgt tcaccccagt
    11761 cacttactta tgtaagctcc tggggattca ctctcttgtc gccttcctgc aactcgaatt
    11821 atttagagca cagctcactt tgttaacaac tttaactact ctttaatgca gtattaaaga
    11881 ttaatcggta acaaagtgag ctgttatgac tgataaaacc attgcgtttt cgttactcga
    11941 tctggccccc attcccgaag gttcttcagc gcgagaagca ttctcccact ctctcgatct
    12001 cgcccgtctg gctgaaaagc gcggctatca tcgctactgg ctggcagaac accacaatat
    12061 gactggcatt gccagtgctg ccacgtcggt attgattggc tatctggcgg cgaataccac
    12121 cacgctgcat ctggggtctg gcggcgtgat gttgcctaac cactcaccgt tggtcattgc
    12181 cgaacagttc ggcacgctca atacactcta tccggggcga atcgatttgg ggctgggtcg
    12241 tgcgccaggt agtgaccaac ggacaatgat ggcgctgcgt cgccatatga gcggcgatat
    12301 tgataatttc ccccgcgatg tcgcggagct ggtggactgg tttgacgccc gcgatcccaa
    12361 tccgcatgtg cgcccggtac caggctatgg cgagaaaatc cccgtgtggt tgttaggctc
    12421 cagcctttac agcgcgcaac tggcggcgca gcttggtctg ccgttcgcgt ttgcctcaca
    12481 cttcgcgccg gatatgttgt tccaggcgct gcatctttat cgcagcaact tcaaaccgtc
    12541 ggcacgactg gaaaaaccat acgcgatggt gtgcatcaat attatcgccg ccgacagcaa
    12601 ccgcgatgcc gaattcctgt ttacctcaat gcagcaagcc tttgtgaagc tgcgccgcgg
    12661 cgaaaccggg caactgccgc caccgattca aaatatggat cagttctggt cgccgtccga
    12721 acagtatggt gtgcagcagg cgctgagtat gtcgttggta ggtgataaag cgaaagtgcg
    12781 tcatggcttg cagtcgatcc tgcgcgaaac cgacgccgat gagattatgg tcaacgggca
    12841 gattttcgac caccaggcgc ggctgcattc gtttgagctg gcgatggatg ttaaggaaga
    12901 gttgttggga tagtgtgtct taacgcggga agccttatcc gagctggcaa cgctgtccta
    12961 cgtagacctg ataagcgaag cgcatcaggc attgtgtagg cagcagaaat gtcggataag
    13021 gcaccgctga ttactgatac accggcagta aattaaagct cgataaaata tgtaccaatg
    13081 cgttgccgac gccaaacacc agaatcagcg taatcatcgg cttgccgccc cagacgcgga
    13141 atttcgggct gccaaagcgt ttacgcgatg cgcgggccag cagtgccgga acaattgccg
    13201 cccagatggt agccgctaaa ccagcataac caatggcgta caggaatcca ttcgggaaca
    13261 gcagaccacc cacaacaggc ggtgcaaagg tcaacaatgc tgttttcaag cggcccatag
    13321 ccgagtcatc gaaaccaaac agatctgcca gatagtcaaa caaacccagc gttacgccaa
    13381 ggaacgaact cgctaccgca aagtttgaga acacgaccag cagaaggtcc aggctacggc
    13441 tgttcagcac gccgcttaat gcctgtacca gcacatcaat attaccgccc ttctctgcaa
    13501 taccgataaa ctccggacgc gggatgttac ccatcgtcgc cagcaaccag atggtataca
    13561 gcgccagtgc catcagcgta ccgtacacca ggcatttcac gatggttttc ggatctttgc
    13621 cgtaatactt catcaggctt ggcacgttac cgtgataacc aaacgacgcc aggcagaacg
    13681 gcaatgtcat cagcagatac ggcgcataag atgcattgct ttctgcaacg ttgaacaatg
    13741 tcgcaggctg cacatgcccc aacaggctgc caaaggtgag gaagaaggta atgactttcg
    13801 cccccagcac aatcgccgtc atgcggctga cggccttagt actcaaccac accacaaacg
    13861 ctaccagcag tgcaaaacca aaacccgccg cccgtgccgg gacgtttagc gacatctctg
    13921 cgaaggtgtg atgcagaatt gaaccactgg cagaaatata ggcataggtc aggatataga
    13981 gcacaaaggc aatggaaata ccgttgacca cgttccagcc tttgcccagc aaatctttgg
    14041 tgatggtgtc aaaactcgaa ccgattcggt aattcaggtt agcttccaga atcatcaagc
    14101 cggaatgcag catacagaac caggtaaaga tcagcgccgc cattgaccag aaaaaccacg
    14161 ccccggacat gaccactggc agagaaaaca tccctgcgcc aataatggtg ccgccgataa
    14221 tcaccacgcc gccaagcagc gacggtgacg tttgggtggt ggttagtgtt gccatgaggg
    14281 cttctctcca gtgaaaaata gtgcgactgc gttgttatgc attgcactgt accagtacgc
    14341 gagtacaaaa gacagaaaaa aagccccgat ggtaaaaatc ggggctgtat atattatttt
    14401 acagattgtg ttcgctgttc agcgatgatt acgcatcacc accgaaacga cgacgaccgg
    14461 tagagtcatc acgacgcgga gcgcggcctt cacgacgttc gccgctaaaa cgacgaccat
    14521 caccacggcc accttcacgg cgttcaccgc tgaagttacg accgccttca cgacgttcgc
    14581 caccgaaacc acgaccaccg ccacgacgct caccgccagt atgcggctgt gcatcgccca
    14641 gtaactgcat gttcatcggc ttgttgagaa tgcgagtgcg cgtaaagtgt tgcagcactt
    14701 cacccggcat acctttcggc agttcgatgg tggagtgaga agcaaacagc ttgatgttac
    14761 caatgtaacg gctgctgatg tcgccttcgt tagcaatcgc accaacgata tgacgaactt
    14821 caacaccatc atcacggccc acttcaatgc ggtacagctg catatcgcca acatcacgac
    14881 gttcacgacg cggacgatct tcacggtcac cacgcgggcc acggtcgtta cgatcgcgcg
    14941 gaccacggtc atcacggtca cggaattcac gtttcggacg catcggcgca tctggcggta
    15001 cgatcagagt acgttcaccc tgtgccattt tcagcagtgc cgcagccaga gtttcgagat
    15061 ccagctcttc accttctgca gtcggctgaa ttttgctcag cagtgcgcgg tattgatcca
    15121 gatcgctgct ttccagctgc tgctgtactt tagcggcgaa tttttccaga cggcgtttgc
    15181 ccagcagttc tgcgttcggc agttctactt ccggaatagt cagcttcata gtacgttcaa
    15241 tgttgcgcag cagacgacgc tcgcggttct caacgaacag cagcgcgcgg ccagcacgac
    15301 ccgcacgacc ggtacgaccg atacggtgaa cgtaagactc agaatccatc gggatatcgt
    15361 agttaactac caggctgata cgctcaacgt ccaggccacg ggctgcaacg tcggtcgcaa
    15421 tcaggatgtc cagacgacca tctttcaggc gttccagtgt ctgttcacgc agcgcctggt
    15481 tcatgtcacc gttcagcgcg gcgctgttgt agccgttacg ctcaagagct tcagccactt
    15541 ccagagtcgc gtttttggta cgaacgaaga taatcgccgc atcaaaatct tccgcttcca
    15601 ggaaacgtac cagtgcttcg tttttgcgca taccccagac agtccagtag ctctggctga
    15661 tgtcaggacg ggtagtcacg ctggactgaa tgcgcacttc ctgcggctct ttcataaagc
    15721 ggcgggtaat gcgacgaatc gcttccggca tggttgcaga gaacagagcg gtctgatgac
    15781 cttccgggat ctgcgccata atggtttcaa cgtcttcgat gaagcccatg cgcagcattt
    15841 cgtcagcttc atccagaacc agaccgctca gtttagagag gtccagagtg ccacgtttca
    15901 ggtggtccag cagacggccc ggagtaccga caacgatctg cggcccctga cgcagggcgc
    15961 gtaattgcac gtcataacgc tggccgccgt acagagcaac cacatttacg ccgcgcatgt
    16021 gtttagagaa atccgtcatt gcttcagcaa cctgtaccgc cagttcgcgg gtcggtgcca
    16081 gcaccagaat ctgtggtgct ttcagctcag gatcaagatt ctgcaacaga ggtaaagaga
    16141 atgctgcagt ttttccgctc cccgtctggg ccatacccag aacgtcgcgg ccattcagca
    16201 gatgtggaat acactctgcc tgaattggag atggtttttc gtaacccaga tcgttaaggg
    16261 cttcaaggat aggagccttc aggcccagat ctgcaaaagt ggtttcgaat tcagccatgt
    16321 agtacgtgtg cctcaaaatt aatggcggcc agtctacata actcatcatg aaattgatca
    16381 gcaattttca ttgaaaagtg tgaaccggct caaagtaggt gtattaacga acaacaacgc
    16441 cctcacccct taaggtgatg gcaatcaaaa aagattacgg gctgatgtgt acgtcagcta
    16501 ttgctggtcc gattctgcca ggtcatcttg gtcctggccc aggagcgata attccaacaa
    16561 tgcgtatcgg tgctcaacaa agttatgaac gttgttggca accgccagtt tgaacagtgc
    16621 cgtggcgctg tccgaatccc ccagacttag gtagtactta cctaaataga agttggtttc
    16681 actgagatgc tcagcgagcg aggtgttatc cgttgcgtcc gccttgagcc tttccattaa
    16741 cgtttgttcg ctaatgttgc ccaggtagaa ctcgacaatg ttccatcccc actgttcctt
    16801 atccgatttt tcgaagtgct gtttcaacac ttctttagcc tgcttctcat cgagcttctg
    16861 ctcggcgaga taaagccaca gactacggaa aggatcattg ggatcgtctt gataaaacgc
    16921 cagcagatca tcttgcgcta acttgtcacg accgccgtaa tataatgcga tcccgcgatt
    16981 caagtgcgcg tagttgtaag ttggatcaag ctcaagtaca gaatcaaacg cttcataggc
    17041 agcatcaaaa ttgcctgcct gcgttaaata tatgcctaag taattgaaca cttcaggcat
    17101 atccggtcgg attgccagcg cttgcgaaaa atcgttacgc gctaatgccc tcagaccgag
    17161 actatcatac aacactccgc gctcatataa aagctgtgcg cgttcgtcat cggttaaagc
    17221 ccgactggca aggatttgtt ccatacgtgc cagaatcact tcctgctgta aagtcggttg
    17281 caatggtacc gcgaggactt cacttttacg ccaggaagta ttactgcatc ctgcaagcgt
    17341 aagtgctgtc gcaacgaaac accagcgcaa aaaaggcttc atttcccact cccgaagacc
    17401 acggttgaat gaacgtcctg ttcccggttg ctaacaaggc gtcctgcccg gttaaaagcc
    17461 ccccgccgca gcggagggca aatggcaacc ttactcgccc tgttcagcag ccggagcttc
    17521 cggtgctgca gcaggttgag actgctcagt cgcttcttta atgctcagac ggatacggcc
    17581 ctggcgatca acttccagaa ctttcaccgg tacttcctga cccatctgca ggtaatcggt
    17641 cactttctca acgcgtttgt cagcgatttg agagatgtgg accagacctt ctttaccgcc
    17701 gccgatggca acaaatgcgc caaagtcaac gatacgggtc actttaccag tgtagacgcg
    17761 gcccacttcg atttctgcag tgatctcttc gatacgacga atagcatgtt tcgctttctc
    17821 gccgtcggtc gctgcgatct tcacagtacc gtcatcttcg atttcgatgg tagtgccagt
    17881 ttcttcggtc agggcacgga taacagagcc gcctttaccg ataacgtctt tgatcttgtc
    17941 cgggttgatc ttgatggtat ggatacgcgg tgcgaactca gagatatcgc cacgcggcgc
    18001 gttgatcgcc tgttccatta cgcccaggat atgcagacgc gcacctttag cctggttcag
    18061 cgcaacctgc atgatctctt tggtgatacc ttcaattttg atatccatct gcaatgcaga
    18121 gataccctcg cgggaacccg caactttgaa gtccatatcg cccaggtgat cttcgtcgcc
    18181 caaaatgtca gacagtacaa cgtagttgtc gccttctttc accagaccca ttgcgatacc
    18241 cgcaacggca gctttgatcg gcacacctgc gtccatcagc gccagagacg cgccgcacac
    18301 ggaagccata gaagaggaac cgttggattc agtgatttca gacacaacac gtacggtgta
    18361 cgggaatttg tccatatccg gcatgactgc cagcacgctg cgcttcgcca gacgaccgtg
    18421 accaatttca cgacgcttcg gagaaccgac catgccggtt tcgcctacgg agtacggagg
    18481 gaagttgtag tggaacagga aggtatcggt acgttcgccc atcagttcat caagaacctg
    18541 cgcgtcacga gcagtaccca gcgttgcggt aaccagcgcc tgcgtttcac cacgggtgaa
    18601 cagcgcagaa ccgtgagtac gcggcagcac gccagtacgc acatccagac cacggatcat
    18661 atctttttca cgaccgtcga tacgcggttc gcctgccagt acgcggctac gaacaacgtt
    18721 tttctcgata gcgtgcagaa tttcacccag ttcgttttcg tccagggttt cgtcttcagc
    18781 aagcagcgtc gcgatggttt cagatttgat gacatcaacc tgcgcataac gctcttgttt
    18841 gtcggtgatg cggtaagcat cgctcaggcg agcttcagcc agtgcagcaa cgcgcgcgtt
    18901 cagcgcttcg tttaccggct ccggctgcca gtcccaacgt ggtttaccgg cttctttcac
    18961 cagttcattg atgttctgaa taacaacctg ctgttgttca tgaccgaaca ctactgcgcc
    19021 cagcatctgg tcttcgctca gcagttcagc ttcagattca accatcagaa cagcggcttc
    19081 agtaccggca acaaccagat ccagtttgct ctctttcagc tcgtcctgag tcgggttcag
    19141 tacgtactgg tcattgatgt aacctacgcg agcagcacca atcggaccat tgaacggaat
    19201 accagacaga gacagtgctg cggaagcacc aatcatcgcg acgatatccg ggttaacttg
    19261 cgggttaaca gaaaccacgg tggcgataac ctgaacttcg ttgacgaagc cttccgggaa
    19321 cagcgggcga atcgggcggt caatcagacg cgcgatcagg gtttcgcctt cgcttggacg
    19381 accttcacga cggaagaagc tacccgggat acgaccagca gcgtaggtac gctcctgata
    19441 gttaacggtc agtgggaaga agtcctgacc tggtttggct tttttctggc caacaacggt
    19501 aacaaatacc gcggtgtcat ccatgctaac cataacagcg gcagtagcct gacgagccat
    19561 catgccggtt tccagagtca cggtgtgttg gccgtactgg aatttacgaa cgatcggatt
    19621 aagcaatgta atatcctttc tctttcttag acagtacctt acggcactgg tgttaatacc
    19681 cgatcttctg cgcatcctcg cgactaatga caaccctaac ccagctctat gtgggtaaag
    19741 cctctcatta gccgcgcgaa cctctgcaac ggaagatcat tcatagcaac aatacattag
    19801 tttccagtga attgctgccg tcagcttgaa aaaaggggcc actcaggccc ccttttctga
    19861 aactcggcag gaattagcga cgcagaccca ggcgctcgat gagctgggtg taacgtgcta
    19921 cgtctttacg tttcaggtag tcgagcagtt tacgacgctg agaaaccatg cgcagcagac
    19981 cacgacggct gtggtgatct tttttgtgct ctgcaaagtg gccctgcagg tggttgatct
    20041 gtgcagtcag cagtgctacc tgaacttcgg tagaaccggt gtcgtttgcg tcacgaccaa
    20101 attcagaaac gattttagct gttgcttcag tacttagaga cattttaaaa ctccaaagta
    20161 tatagaatga aaggacgccg atctctaatt cagcgatccc agtgtacgtt acgcaaagtg
    20221 ttaaacaatt tacgcgacgt taagcggcag tattctactc gtagcgactt gttatcgcaa
    20281 gacggttaac attacgccgg gtattcaacc accaggcgac gaggcgcgac gcggccttca
    20341 tcgtcaattt cgcccatacc gataaacttg ccgttctcac cttctgtaac gcgaaccagt
    20401 ccttccagcg gcgcaccgga tgtacgaact gggttaccat ttttgaagta aacagaagac
    20461 gttaacggaa gattcaccac cgggtagtcc gaagctggac tgtccattgg catcagtaat
    20521 ggatcaagta actccgcagc cggaatatcc tgctgttcgg cttgttcgac cagttcacgc
    20581 agatgttcca gggtcaccat ccgttcaacc ggatatttac ttaccgccag acgacgcagg
    20641 taaataacat gcgcgccaca accgagtttt tcacccaggt catcaatgat ggtgcggata
    20701 taagtgcctt ttgagcagtg aatttccagc tccagctcat tgccttcgtg gcgaataaac
    20761 agcaattcat aaatggtaat cgggcgcgct tcacgcggta cttcaatgcc ctgacgcgca
    20821 tattcgtaca gttttttacc ctgatatttc agtgctgaat acatcgaagg gatctgttcg
    20881 atatcgccac ggaaagtatc cagcgccgcc gccagttgct ctgcgctaaa ggttaccgga
    20941 cgttcttcaa cgatttgtcc gtcggcatca gaagtatcgg tacgctgtcc aagacgcgca
    21001 atgacccgat agcgtttgtc ggagtccagc agatactggg aaaacttcgt cgcttccccg
    21061 aagcaaattg gcaacatgcc agttgccagc gggtccagcg caccggtatg cccggcacgg
    21121 ttggcgttat aaatccgttt cactttttgc agcgcatcat tgctggacat accctgcggt
    21181 ttatccagca acaaaacgcc gttaatgtcg cgaccgcgac gacgaggacg actcattagt
    21241 cctccttgct gtcgtccggg ttaacacgac gttcttcgtc atgtttgacc acgctggtca
    21301 ccaggtttga catgcgcatc ccttcaacca gagagttgtc gtagaagaag gtcagttccg
    21361 gcacgatacg caggcgcatc gctttcccca gcaggctgcg gatgaaacca gaagcttctt
    21421 gcaacgcttt gatgcccgct ttaaccgcgt cttcatcttt gtcgttgagg aacgtcacat
    21481 atactttggc atacgccagg tcgcgagaca tttcgacacc ggaaacggtg gtcatcatgc
    21541 ccaggcgagg atctttaatt tcacgctgca ggatgagagc gatctctttt tgcatttcct
    21601 gcgctacgcg ctgcgggcga ccaaattctt tcgccataat aaattctcct gacaaaaaag
    21661 ggactgttag ccccttttta aaattaattt caggtggaag ggctgttcac gttggcctga
    21721 taagacgcgc cagcgtcaca tcaggcaatc catgccggat gcggcgtaaa cgccttatcc
    21781 cgcatggaac cctaaaaacc ttaagcgatg gtacgttgga tctcgatgat ttcgaatact
    21841 tcgatcacat cgccagtgcg gacgtcgttg tagttcttaa cgccgatacc acattccata
    21901 ccgttacgga cttcgttaac gtcatctttg aagcggcgca gggactccag ctcgccttcg
    21961 tagataacca cgttgtcacg cagaacgcgg atcgggttgt gacgtttaac cacaccttcg
    22021 gtaaccatac agcctgcgat ggcaccaaat ttcggcgatt tgaacacgtc acgaacttcc
    22081 gccagaccga taatctgctg tttcagttcc ggagacagca taccgctcat cgccgctttc
    22141 acttcgtcaa tcaggttata gatgacggag tagtaacgca gatctaggct ttccgcttca
    22201 atcactttac gtgcagaggc atcagcacgt acgttgaagc caaccaggat ggcgttggac
    22261 gccgcagcca gggtggcgtc ggtttcggtg ataccaccta cgccagaacc gatgatcttc
    22321 actttaactt cgtcagtaga cagtttcagc aaggagtcgg agatcgcttc cacagaaccc
    22381 tgtacgtctg ccttcaggac gatgttcact tcgtgaactt cgccttcggt catgttggcg
    22441 aacatgttct cgagtttaga tttctgctga cgcgccagtt taacttcgcg gaatttaccc
    22501 tgacgataca gtgcaacttc acgcgctttc ttctcgtcac gtacaacggt aacttcatca
    22561 cccgcagccg gtacgccgga caggccgagg atttccaccg gaatggacgg acccgcttcc
    22621 agcacttcct gacccagttc gttacgcatc gcacgaacac gaccgtattc gaagccacac
    22681 agaacgatat cgcccttgtg cagagtacct tcacgtacca gaacggttgc aaccggacca
    22741 cgacctttat cgaggaagga ttcgataacc gcaccgctcg ccataccttt acgtaccgct
    22801 ttcagctcca gaacttccgc ctgcagcagg atagcgtcca gcagttcatc gatgccggta
    22861 cccgctttcg cagatacgtg tacgaactgg ctttcaccgc cccactcttc tggcaggatg
    22921 ccatactggg agagttcgtt cttaacacga tccggatcgg cttctggttt atcaatcttg
    22981 ttcactgcaa ccaccaccgg tacctgcgcc gctttcgcgt gctggattgc ttcgatggtc
    23041 tgcggcatca cgccgtcgtc ggcagcaaca accaggacta cgatgtccgt tgcctgcgca
    23101 ccacgagcac gcattgaagt aaacgcggcg tgccctgggg tgtccaggaa ggtgatcatg
    23161 ccgttttcag tttcaacgtg gtatgcacca atgtgctggg taatgccgcc cgcttcgcca
    23221 gaggccactt tcgttgaacg aatgtagtcc agcagagagg ttttaccgtg gtcaacgtga
    23281 cccatgatgg tcacaaccgg cgcgcgcggt tcagccgcag cccccgtgtc acggtcgctc
    23341 attaccgcct cttccagctc gttttcacga cgcaggataa ctttgtggcc catctcttca
    23401 gcaaccagct gtgcggtttc ctgatcgata acctggttga tggttgccat tgcgcccagt
    23461 ttcatcatcg ctttgatgac ctgagagcct ttaaccgcca tcttgttcgc cagttcgcca
    23521 acggtgatgg tttcgccgat cacaacgtca cggttaacgg cctgagctgg cttctggaag
    23581 ccttgctgca gggaagaacc tttacgtttt ccgcctttac ctccacgtac tgctgcgcga
    23641 gcttcttcac gatcagcttt tgattcagcg tgtttgttgc ctttcttcgg acgcgctgct
    23701 ttcgcgttac gaccacggcc acggccgcct tcgacttcac gatcgctttc gtcttctgcc
    23761 tggcgagcat gttgagaagt agtgacgtga taatcgctgg aatcttcagt cggttccgcg
    23821 ttatcagtcc atttgttttc ttccgccata cgacgtgctt cttcagcaac gcgacgtgct
    23881 tcttcttcga gtttacgacg cgcttcttct tcagctttac gcttgagctc tgcagcttcc
    23941 tgctcacggc gggctttttc agcctgggcg tttttagtca tatcgtcttg ttgattgctc
    24001 actttgtctt tttccgcagc ttcacgtttc gcttgttcag cagcttcacg cttagcttgt
    24061 tctgcggcct cacgttcagc tttttgttgc gcctcgcgtt tagccgattc ttctgcctca
    24121 cgacgggctt gctcttccgc tgcaaggcgt tcagcctctt gcggatcgcg tttcacaaag
    24181 gtgcgtttct tgcggacttc gatttgtacc gatttgcttt ttccaccggt accaggaatg
    24241 ttaagggtgc tgcgtgtttt acgttgcagc gtcaatttgt ccgggcctga atttttctga
    24301 ttcaggtggt caatcaaagt ctgtttctct tgtgcggaca cagagtcgtc agcagacttc
    24361 cggatacctg catcagcaaa ttgctgtacc aggcgttcca cggaggtctg tcgctctgcg
    24421 gccagcgttt taatcgttac atctgtcatg ctgttccttc ctgctacagt ttattacgct
    24481 tcgtcaccga accagcaaat attacgggca gccataatca gtgctccggc tttttcgtcg
    24541 gtcacccctt cgatatcagc cagatcatca atgccctgtt cggcgagatc ttccagcgta
    24601 caaacgccac gggcggccag tttgaatgcc aaatcacgat ctatcccttc aaggttcagc
    24661 agatcgtcag ccggtttgtt atcaccgagg ctttcttcct gggcctgtgc aatggtggcc
    24721 agtgcatttt tagcacgctc gcgcagtgct tcaacggtcg gctcatcaag gccttcgatt
    24781 tccaacagct ctttcatcgg cacataggcc agttcttcca gcgtcgagaa gccttcttct
    24841 accagaacag tcgcgaagtc ttcgtcgatg tcgagatatt tggtgaaggt gtcgatcgct
    24901 gcgtgcgctt ccgcctgatg cttagcctgc aggtcgtcaa cggtcatcac gttgagttcc
    24961 caaccgctca gctgcgaagc cagacgcacg ttctgaccgt tacggccaat cgcctgcgcc
    25021 aggttaccgg cttcaacggc gatatccatg gtgtgtttat cttcatccac cacgatagaa
    25081 gcaacgtctg ccggtgccat tgcgttaatc acaaactgcg ccgggttatc atcccacagg
    25141 acgatatcga tacgctcgcc gcccagttca gtagaaaccg cctgaacacg cgcgccacgc
    25201 atacctacac aggcacctac cggatcgata cgtttatcgt tggttttcac cgcgattttc
    25261 gcacgagaac ccggatcgcg agccgctgct ttaatttcaa tcacttcttc gccgatttct
    25321 ggcacttcaa tacggaacag ttcgatcagc atttccggct tggaacgagt gacgaacagt
    25381 tgcgcgccac gcgcttccgg gcgaacggaa tagagcacgc cacgaacgcg gtcgccaggg
    25441 cggaagtttt cacgcggcag catatcttcg cgcaggatca cggcttcagc attgttgccc
    25501 agctccagag agatgttgtc gcggtttact tttttcacca cgccggtgat gatttcacct
    25561 tcgtgttcac ggaactgatc aaccaccatc gcacgttcgg cttcacgcac tttctgcacg
    25621 ataacctgtt ttgccgtctg ggtagtgata cggtcaaagg taacagactc aatctgatct
    25681 tcaacgtaat cgcccaggtt caggctttca tcttcataac gtgcggcttc aagggtgatt
    25741 tccttggtcg gctgggtgac ttcatcaaca actaaccagc gacggaaggt gtcaaaatca
    25801 ccgcttttgc gatcgatctg tacgcggacg tcgatctctt gttcatattt tttctttgtt
    25861 gctgtcgcca gcgcgctttc caatgcttcg aaaatcttct cgcgaggtag cgccttttca
    25921 ttggatacgg cttcaactac agccaaaatt tctttgttca tcgcgggctt ttcacctcat
    25981 ccagactatt aaaagtgggg aaccaggttc gccttctgga tattactcag cgcgaacact
    26041 tcatctttac cttcgacggt aactgtgatc atttcaccgt ctaccgcttt gataacgccc
    26101 tgccatttac gacggttttg taccgccata cggagaacca gagtcacctc ttctccgaca
    26161 aaacgggcgt agtgttcagc cgtgaacagt gggcgatcga gacccggtga ggagacttcc
    26221 aggttataag caacggtgat gggatcttca acatccagca cagcacttac ctggtggctc
    26281 acatcagcac aatcatcaac attgatgcca tcttcactat caatatagat gcgcagtgtg
    26341 gatgtgtgac cgcgaataaa ttcgatgcca accagttcaa aacccagggc ctcaactggc
    26401 gcagtaatca tctctgttaa tttttgctct aatgtggaca agcccacccc caagacataa
    26461 aaaaagggcc taaagcccag ttattctgta gtcagataac aaaaaacccc gataaatcgg
    26521 ggctttatat aactgaaccc tataatcgca actgcggtct ggagcacttt ccagaaggat
    26581 tttttcaaat cccactacga aggccgaagt cttcacagta tatttgaaaa aggactctaa
    26641 gggaaagtgg ttgcgggggc cggatttgaa ccgacgacct tcgggttatg agcccgacga
    26701 gctaccaggc tgctccaccc cgcgcctgaa actcggcaaa ttctactcgt tttgggtaaa
    26761 agatgcaaat actgctggga tttggtgtac cgagacggga cgtaaaatct gcaggcatta
    26821 tagtgatcca tgccacattt tgtcaacgtt tattgctaat cacgtgaatg aatatccagt
    26881 tcactttcat ttgttgaata cttttgcctt ctcctgctct cccttaagcg cattatttta
    26941 caaaaaacac actaaactct tcctgtctcc gataaaagat gattaaatga aaactcattt
    27001 attttgcata aaaattcagt gagagcggaa atccaggctc atcatcagtt aattaagcag
    27061 ggtgttattt tatgacgacg attctcaagc atctcccggt aggtcaacgt attggtatcg
    27121 ctttttctgg cggtctggac accagtgccg cactgctgtg gatgcgacaa aagggagcgg
    27181 ttccttatgc atatactgca aacctaggcc agccagacga agaggattat gatgcgatcc
    27241 ctcgtcgtgc catggaatac ggcgcggaga acgcacgtct gatcgactgc cgcaaacaac
    27301 tggtggccga aggtattgcc gctattcagt gtggcgcatt tcataacacc accggcggcc
    27361 tgacctattt caacacgacg ccgctgggcc gcgccgtgac tggtaccatg ctggttgctg
    27421 cgatgaaaga agatggcgtg aatatctggg gtgacggtag cacctataaa ggaaacgata
    27481 tcgaacgttt ctatcgttat ggtctgctga ccaatgctga actgcagatt tacaaaccgt
    27541 ggcttgatac tgactttatt gatgaactgg gcggccgtca tgagatgtct gaatttatga
    27601 ttgcctgcgg tttcgactac aaaatgtctg tcgaaaaagc ctactccaca gactccaaca
    27661 tgcttggtgc aacgcatgaa gcgaaggatc tggaatacct caactccagc gtcaaaatcg
    27721 tcaacccgat tatgggcgtg aaattctggg atgagagcgt gaagatcccg gcagaagaag
    27781 tcacagtacg ctttgagcaa ggtcatccgg tggcgctgaa cggtaaaacc tttagcaacg
    27841 acgtagaaat gatgctggaa gctaaccgca tcggcggtcg tcacggcctg ggcatgagcg
    27901 accagattga gaaccgtatc atcgaagcga aaagccgtgg tatttacgaa gctccgggga
    27961 tggcactgct gcacattgcg tatgaacgtc tgttgaccgg tattcacaac gaagacacca
    28021 ttgagcagta tcacgcgcat ggtcgtcagt tgggccgtct actgtaccag gggcgttggt
    28081 ttgactccca ggcgctgatg ctgcgtgact ctctgcaacg ctgggttgcc agccagatca
    28141 ctggtgaagt taccctggag ctgcgccgtg ggaacgatta ttcaatcctg aataccgtct
    28201 cagagaacct gacctacaag ccagagcgtc tgacgatgga aaaaggcgac tcggtgttct
    28261 cgccagatga tcgtattggt caattgacca tgcgtaatct ggatatcact gatacccgag
    28321 agaaactttt tggttatgcc aaaactggcc tgctctcctc ctctgccact tcaggcgtgc
    28381 cgcaggtgga gaatatggaa aacaaaggcc agtaattcga catcaaccct gcccttcagg
    28441 gggggggtta ccttgcttat cctctgtaaa ctcctttctg aacatcacat aatcgaaaac
    28501 atcatggttt gcatccacaa cccgtgagtc tcctttatag tgtgcaatca cttcctcaag
    28561 cgtttgcggc tgttccggct ttgttacccc catccacgca ttaataaggt aattattgta
    28621 agctgtcgaa aagatgttgt tttccgttgt gcgatccacg ccatccccaa gaacggggct
    28681 ataccagata aacatcggga catgatatgc ctgctggcta gcctccctgc ctccatgaaa
    28741 atagacgttc ttcttcgtag ggtcacgttc caggccgtgg tcggcaaaat acatgaccga
    28801 ggcgcggcga tcttttaata attcaaaaac ctgacctagc aaactatctg tgtaatgaat
    28861 ggagttgtca tagcaggcat cctgatcgtc ctgcggttga aacacggcgc tggattgcgg
    28921 ataggcgcta caagccggtt catggcttcc atttaaatga agaacaatca gtttcttttg
    28981 ctgcgtattt tgctgtaatg cttgcgataa atgcggcaac aacaattcat caaatcctct
    29041 gacataaact gtttccatgg cgcgcatggc gatactggta actgcagtac cattctgccg
    29101 aaaagcggat tgcgagctta gccagaaagt ctgaaatcct gcttgattag ccatattaat
    29161 aatgttgtcg gggtaattat gaatgtcatg actcaaaaca gaatcagcag ttaaagaaag
    29221 gggaaccgac agcgcagtgt aaggtgcgct gcttattgct tgattaaaca gtttgatctg
    29281 ttttctttgt gcttcaactt gcggtgtcgt agagcgtgta tatccataca aagacatatt
    29341 gtcgacacgt acagactccc ccacaatcaa cacgtaggta tcaatacctg tatccctgac
    29401 tgataattga aaatacggca ccgtgtttgc aattgagagt aatctttgat gctctttcgc
    29461 tgctaaagca aaatagttga gattgaaaaa cggcgtatag gtagcaaatc gcgacgctag
    29521 tatatatgga ctgaacgttt ttttattttt tgcatcttta taagcaaatt gacaagcgga
    29581 aaataaactg cccgaaatga caatcagcaa taatattcct gtcacttttt ttgtcggcaa
    29641 ggaaacatca tattttatta ttactgccca aaaaagaagg gataaaaaag caaaggcaca
    29701 tagataaggg atatacatcc ccagcatttt gacaacttca tccggatcac tctggagcac
    29761 actaatcgca aatccatcat tgaaagttgt accaaaggta caccatgaat agaggctaat
    29821 actcatgtct gccgcagtca gtaacacaaa tggtgcggca acaagcaggc gaagcggaag
    29881 ggatgatata cgttttacaa ccaggatggt caggacgaag aacagcaatc gctgaaccat
    29941 atgcgcgccg gaagaggcga ctaagttcgt aataccaaaa acaataacac aaagatacaa
    30001 caaccaatga gatttaaaac ttctagcaaa tttgttgaat actgtcatcc agaaatccaa
    30061 gttcacaacc aatataaaca attatcaaca atgttcaatt ttatatcaga catgtttttc
    30121 aactctgatc catatcagac cgaaacactg ttagtttttt ctttttaaat gatgcggcca
    30181 ttgcgttctc agtaattaaa taacattatc aatgcgtctc taaacattac gcagaacgta
    30241 gccatcagta gttatactga caggagcagg atggtttatc gagaagtaaa catatccgta
    30301 ttcgtaccgg aactggagtt gacacaataa agtgccaatt atgtcagcag aagggaaaag
    30361 tttataacta aggcgtaccg gcaccatcgt ttcaaggtac cagctacgag taaagcaact
    30421 ggacgagata cagatacctg acaaccattc ctcagaccag gaccaaaacg aaaaaagacg
    30481 cttttcagcg tctcttttct ggagtttggt accgaggacg ggacttgaac ccgtaagccc
    30541 tattgggcac taccacctca aggtagcgtg tctaccaatt ccaccacctc ggcacggata
    30601 ctacttttta gttcgggata tcgctggtcg gcttagccgg agcagctggt tgagtttgtt
    30661 cggttttcgc cggtgcactc agattttccc attcgctacc tttattggtt ttgttgctgt
    30721 tgatgttacc cagcaccaga ctgatgatga agaataacgt tgccagcagc gccgtcatgc
    30781 gggtcatgaa gttaccagaa ccacttgaac caaacagcgt agcggaagcg cctgctccga
    30841 aggaggctcc catatcagcg cctttacctt gctgcagcat gatcagacca acaaggccaa
    30901 ttgccacaat aaggaaaact accaaaagag cttcgtacat aatcaacctg ttccttgcgg
    30961 agttgccgcg taccaatgct tcaaccaata aagcgggagt ttttaatctt tcccactgaa
    31021 gcgggtgtga atactaacca aagcgaatga ccttcgcaag ggcaatttta tcgcattgta
    31081 tcaactgcgg aaaaaaacag caaaaccgat gtgttcgctg agaaaaaagg cgacaatcgc
    31141 cgccttttta gccagtcatt tatcgtttta aacggctttt actgcatcgg cgatgcggtg
    31201 tgcaaattca gtcacctgcg cttcgtcttc gccttccacc atcacgcgaa ttaacggttc
    31261 ggtgccggat ttacgcagca acacgcgtcc acggttgccc agcgcagctt caacctctgc
    31321 ggtcacggct ttaactgact catgctcaag cggatcgccg ctacctgcgg tgtaacgcac
    31381 gttaaccaga atctgcggga acattttcat gccgctgcaa aggtcgtgca ggctcatatg
    31441 gttacgtgcc atcgccgcca gcacctgcaa gccagcaacg atgccgtcac cggtagtggt
    31501 tttatccagc aggatcacat gaccggaatt ctctgcaccg atacgccagc ctttctcctg
    31561 cattttttcc agtacgtagc ggtcacccac tttcgcgcgc gcaaatggaa tacctaactg
    31621 tttcagcgcc agctcaagcc ccatgttact catcaatgta cccacagcac caccacgcag
    31681 ctggccctga cgaagacctt cacgcgcgat gatatacatg atctgatcac catcgacttt
    31741 attgccttca tggtcaacca taatcacgcg atcgccgtcg ccgtcgaagg caataccgag
    31801 atccgctttt tcagccagca cacgagcctg gagcgcgcga acgtcggtag cccccacttc
    31861 ggcattgatg tttacaccgt tcggctcaca accgatagcg ataacgttcg cccccagttc
    31921 acgcagcacg ttcggcgcga tgtgataagt cgcaccgttt gcgcaatcca ccacaatctt
    31981 cagttcgctg aggctaagtt cgttcgggaa cgtggctttg caaaactcga tatagcgacc
    32041 cgcagcatca acgatacggc tggctttacc cagttctgcc gaatcaacac agctgatctc
    32101 tttttccatt tccgcttcga tggcctcttc taccgcatcc ggtagtttgg tgccgtcgat
    32161 agagaaaaat ttaatgccat tatcgtagaa cgggttatgc gatgcagata tcacaattcc
    32221 ggcctctgcg cggaaggtac gcgtcagata cgccacggcc ggtgttggca tcgggccagt
    32281 gaagagtgcg gaaaggcccg ctgccgccag acccgcttcc agtgctgact ccagcatata
    32341 gccagaaata cgcgtgtctt tactaataat gatcttacgg gagccgtggc gcgccagcac
    32401 tttacccgcg gcccaaccca gcttaagcac aaaatcaggt gtgatcggcg catcccctac
    32461 acgaccacga atcccatcgg taccgaaata tttacgatta ctcatagcgt ttgttttcct
    32521 ttgcagacag agtggcttcc accacccgca tcgcttctac ggtttctttg acgtcatgaa
    32581 cacgaataat gtgcgcgcct tgcattgcgg caatgaccgc acaggccaga ctaccgctca
    32641 ggcgctcgga cggccccacg ttcagcagct gcccaatcat cgattttcgt gacataccta
    32701 ccaacagcgg caggttgaaa tggtgaaatt cagccaggcg cgccagtaat gaatagttat
    32761 gggagagatt tttaccgaaa ccgaatccgg ggtcgagcaa caatttctct tttgcgatac
    32821 ccgcctgctc gcaacgtgct atttgctcaa taaagtagcg attcacttct gcaaagacat
    32881 cgtcatactt cggagcttcc tgcatggttt ttggatttcc ctgcatatgc atcagacaaa
    32941 ccggtaaacc ggtttctgcc gccgcctcca gagcgccagg ttcggaaagg gagcggatat
    33001 cgttaataat gtgagcgcca actttcgctg actcacggat gacttctggt ttggatgtat
    33061 ctaccgagag ccagacttcg aagcgttgag caattgcctc aaccacagga ataacacgtt
    33121 gcaactcttc ttcaacgcta acttccgccg cccctgggcg cgtggactcg ccaccaacgt
    33181 caatgatcgt cgcgccagcg ttgatcatca gattcgcatg tttcaccgca tctatcagcg
    33241 agttatgcgt gccaccatcc gaaaaggaat caggcgtgac gttgaggatc cccattacgt
    33301 gaggatggct aaggtccagt gaagtgccct gggcaaagag tttcatggtg ttatccctgg
    33361 tatgaattga taagaaaaaa ccccggagca cgccccgggg ttttcggtac aaatacagtc
    33421 atctgatgcg ggaacttact tgtcgcctaa ctgctctgac atggtgttac ccgggttcgg
    33481 cgtacgcggt tcatcaaccg gacgaggagc ctttggacta ccattgtcgc cagaattgtt
    33541 agaagcgcct ggttcttccc agcccgctgg cggacgtaca tcgcgacgtg ccatcaggtc
    33601 atcaatctgc ggtgcgtcga tagtctcata tttcatgaga gcatctttca tcgcatgcag
    33661 aatatccata ttgtcggtca gaagctgacg cgcacgatta tagttacgct caatcagtgc
    33721 tttcacttcc tggtcgatga tacgtgcagt ttcatcggac atatgtttcg ctttcgctac
    33781 gctacggccg aggaacactt caccttcttc ttccgcgtac agcagtggac ccaatttctc
    33841 agagaagccc cactgagtca ccatattacg cgccaggttg gtcgcaactt taatatcgtt
    33901 ggacgcaccg gtagaaacat gttccggccc gtagatgatc tcttctgcca gacgaccacc
    33961 gtacagcgta gaaatctggc tttccagttt ctgacggctg gcgctgattg cgtcgccctc
    34021 aggcaagaag aaagtcacac ccagcgcacg accgcgtggg ataatcgtca ctttgtgcac
    34081 cggatcgtgt tccggcacca agcgaccgat aatcgcatga cccgcttcgt ggtaagccgt
    34141 cgattctttc tgcgcttccg tcatcaccat ggagcgacgt tccgcaccca tcatgatttt
    34201 atctttcgct ttttcgaact caatcatcga cacaacgcgt ttgttgccac gagcagcgaa
    34261 cagtgccgct tcgtttacca ggttcgccag gtcagcaccg gagaaaccag gagtaccacg
    34321 ggcaatgatt gccgcgtcga tatcgggtgc caatggtacg cgacgcatgt gaactttcag
    34381 gatctgctca cgaccgcgaa catctggcaa gccaaccaca acctgacggt cgaaacggcc
    34441 aggacgcagc agggctgggt caagaacgtc cggacggtta gtcgcggcga taacgatgat
    34501 accttcgtta ccttcgaagc catccatctc aaccagcatc tggttcagag tctgttcacg
    34561 ttcatcgtga ccaccgccca gaccagcgcc acgctggcgg cctacggcgt cgatttcatc
    34621 gataaagatg atgcacggtg ccgctttctt cgcctgttcg aacatgtcac gaacacggga
    34681 tgcacccaca ccgacgaaca tttctacgaa gtcagaaccg gagatagtaa agaacggaac
    34741 tttcgcttcg cctgcaatcg ctttcgccag caacgtttta ccggtacccg gaggaccgac
    34801 catcaggacg cctttcggga tcttaccgcc gagtttctgg aagcggctcg gctcgcgcag
    34861 atactctacc agttcagcaa cttcttcttt tgcttcgtcg cagcccgcaa cgtcagcaaa
    34921 ggtcgttttg atctgatctt ccgtcagcat gcgcgctttg ctcttaccaa acgacatggc
    34981 acctttgcca ccgccgccct gcatttgacg catgaagaag atccagacac caatcagcaa
    35041 cagcatcggg aaccaagaga tgaagataga agccagcagg cttggttctt caggcggttc
    35101 accgacaacc ttgacgttct tggtcaacag gttatccagt aatttcggat cctgaaccgg
    35161 aatgtaagtg gtataacggt tactatcttt cttggtaacg ttgatttcac gtccgttgat
    35221 acgcgcttca cgaacctggt cgttattgac ctcttgtagg aaggtagagt aatccacctt
    35281 acggccatta gactcgctgg gcccaaagct ctggaatact gacatcagca caacggcaat
    35341 gaccagccag agtattaggt ttttcgccat gtcactcaag ggattaacct cttattacaa
    35401 ctgtgttaaa aacagcgtca ggatactcta tatccagcat ctttcaaact ttcgtctgaa
    35461 atctcccggt tagggtttac gcccggtcgc tacaatatac acttcccgcg aacgtgcacg
    35521 agaagagtcc ggcttacgaa ctttgacctt cgtaaacagg gagcgaattt cccttagata
    35581 ctcatcgaaa ccttcgccct ggaacacctt cactacaaaa ctgccacctg gcgctaatac
    35641 atcacgacac atttctaacg ccagttccac cagatacatg gcacggggga tatccaccgc
    35701 cggtgttccg ctcatgtttg gtgccatatc ggacatgaca acctggactt tgctgtcgcc
    35761 aacgcgctcc agcagtgctt tcatcaccag ttcatcacga aaatcgccct gaagaaagtc
    35821 cacaccaacg ataggatcca taggtaaaag atcgcaagcg atgatgcggc ctttgccgcc
    35881 aatttgggtg accacatatt gtgaccaacc acccggagca gcaccaaggt cgacaaccgt
    35941 cattcccggt ttaaagagtt tgtcactttg ctgtatttca tcaagtttaa accaggcacg
    36001 ggaacgtaac ccctttttct gtgcctgttg aacatattta tcgctaaagt gttcctgaag
    36061 ccagcggctg gagctggcag aacgcttctt acctgtcatt taactttccc atggggataa
    36121 ctcatcgtaa ccaattgcgt aaatttttac gcgcctattt ggtgatatat gggagatggc
    36181 ggtagaatga cccgttttca atcccaacgt aagcaaaaaa tacgatgaat ctgagtacta
    36241 aacaaaaaca gcacctgaaa ggtctggcac atccgctcaa gccagttgtt ctgcttggca
    36301 gtaatggttt gaccgaaggg gtgctggccg agattgaaca agcgttagag caccatgaac
    36361 tcatcaaggt gaaaatcgcc accgaagatc gcgaaacaaa aaccttgatc gtggaagcta
    36421 tcgtgcgcga aaccggcgcc tgtaatgtac aggtcatcgg taaaacgctg gtgctttatc
    36481 gcccaactaa agaacgtaaa atctcgctgc cacgctaaga ttatcctaaa gttacacaca
    36541 tttgctgtgt aaaacgaggg gttttccgca ggcaggagag caaaatgcca cgctctgttc
    36601 gttgataaaa ggccgcatag cggccttttt cctttcttta caatacatca acatcttgat
    36661 gtattgggta attcttacag gtattccacc ttaattactt caaattctac ttcgccgccc
    36721 ggcgttttga tgaccacaac atcatcttct tctttgccga tcaggccacg agcaataggc
    36781 gagtttacag aaatcaggtt ttgtttaaag tcagcttcgt catcgccaac gatgcgataa
    36841 gtctgttctt cgtcagaatc cagattcagc accgttacgg tagcaccaaa aataacgcgc
    36901 ccattgttgg gcattttggt gacatcaatc acctgcgcgt tcgacagctt ggcttcgatg
    36961 tctttaatac ggccttcgca gaaaccctgc tgttcacgag ctgcgtggta ttcggcgttt
    37021 tctttcaggt cgccatgctc acgcgcttcc gcgatagcag caatgatttc aggacggcgc
    37081 acagatttca gaaaatccag ctcttcgcgt aatttttcag cgccgcgtaa ggtcatcgga
    37141 atagcttgca tttgttatac ctcttgaata ttcctgatgg ggcaagtctt cacccacccc
    37201 ggctgttcgg cctgcccggc ataactcctc accgggacca gaagcaaaaa aataccgacc
    37261 cgggtacaag tcccaggtca gctacaattc acattttgat agtcatttta ccctgaagtt
    37321 cccgaagggt catcgtttac tttatagggc gttgcgccgt agtatgacgg ctcgattcca
    37381 ggttgttagc gcgagattat gcgattttcc agatttatca tcggattgac cagctgtata
    37441 gcgttcagtg ttcaggccgc gaatgttgat gagtacgtta ctcaactccc cgctggtgcc
    37501 aaccttgccc tgatggtgca aaaagtcggc gcgtcggccc ccgctattga ttaccacagt
    37561 cagcagatgg cgctgcccgc cagtacgcag aaagtgatta ctgcgctggc ggcgttgatt
    37621 caactcggcc ccgattttcg tttcaccacg acgcttgaaa ccaaaggcaa tgtggaaaac
    37681 ggcgtactta agggtgactt agtggcgcga tttggtgccg atccgacgtt aaaacgtcag
    37741 gatattcgca atatgatcgc gactttgaaa aaatctggcg tcaaccaaat cgatggcaat
    37801 gtgttgatag atacctccat tttcgccagc cacgataaag cccccggctg gccatggaat
    37861 gacatgacac aatgctttag cgctccgcct gccgctgcca tagttgaccg caactgtttc
    37921 tccgtctcgc tctacagtgc cccaaaacct ggtgatatgg cttttatacg cgtggcatct
    37981 tattaccccg ttacgatgtt cagccaggta cgcaccctcc cccgaggttc tgccgaagcg
    38041 caatactgcg aactggatgt cataccaggc gacctgaacc gctttacgct gacgggatgc
    38101 ctgccacaac gttctgagcc gctcccgttg gcttttgccg tgcaggatgg agccagctat
    38161 gccggggcaa ttctgaaaga tgagttaaaa caggcaggta tcacctggag cggaacactg
    38221 ctgcgccaga ctcaggttaa cgaacctgga acggtagttg ccagtaaaca gtcggccccg
    38281 ttgcacgatc tgcttaagat tatgctgaaa aagtcggaca acatgatcgc cgatacggtt
    38341 ttccgcatga taggccatgc gcgcttcaat gtgcctggaa catggcgggc cgggtcggac
    38401 gccgtgcgtc agatcctgcg ccagcaagcc ggtgtcgata ttggaaacac cattattgcc
    38461 gatggttcag ggctttcgcg gcataacctg attgcccccg ccaccatgat gcaggtgttg
    38521 caatacattg cccaacacga caatgaactt aactttatct ccatgctgcc gctggcgggc
    38581 tatgatggct ctttgcagta ccgtgcaggt ctgcatcagg cgggcgtgga tggaaaagtc
    38641 tcagcgaaaa ccggttcgtt gcagggggta tataacctgg cgggattcat taccacagcg
    38701 agcgggcaac gaatggcgtt tgtacaatat ctttctggct atgcagtaga accggcggat
    38761 cagcgtaatc gccgtattcc gttagtgcgt tttgaaagcc gtttgtataa agatatttat
    38821 cagaacaatt agtcaaaaag aaaccccggc acatggccgg ggttttgctg attaacgctt
    38881 gtaaatgaac tcaacgcctt cttcgtcgtc ttcgtcccag tcatcatccc agtcctcatc
    38941 atcctcttca gcaatctctt caagctgctg gcgatgataa tcatcccaca tgaattcgac
    39001 tttctctggc tgtttcgctt cttcagcctg cacgaccggg ttttcaatga taaaggtcat
    39061 cacatcccag cagagatctt tcacgcccag tccactcgcc gcagagatca gataatattt
    39121 atcttcccag cccagcgctt cagcaatcgc tttcgctttc tcttcagctt ctgccttatc
    39181 cagcagatcg atcttattga acactaacca acgcggtttc gccgccagat cctggctgta
    39241 tttttccagc tcgctgataa taatacgcgc gttttcaacc ggatcggtgc cgtcaatcgg
    39301 atcgatatcg atgaggtgca acaggacgcg gcaacgttcc aggtgcttca ggaagcggat
    39361 acccagacct gcgccttccg cagcgccttc aatcagtcct ggaatatcgg caacaacgaa
    39421 gctcttttcg ttgtccattc gtaccacacc cagacttggc accagagtgg taaacggata
    39481 atccgccact ttcggtttag ccgccgatac cgcgcgaata aaggtcgatt tacccgcgtt
    39541 tggcatcccc aacataccga cgtcagccag cagcatcagc tccagcagca gctcacgctt
    39601 atcacccggc gtaccgttgg ttttctgccg tggtgtacgg ttaacggacg atttgaaacg
    39661 ggtattgccc agaccgtgcc agccgccctt agcaaccagc agacgctgac cgtgtttagt
    39721 catatcgccc atggtttcac cagtaccctg gtcgattaca cgcgtaccta ccggcacttt
    39781 aatcgtcacg tctttaccgc gcttaccggt acaatcgcgg cttgcgccgt tctgaccgcg
    39841 ctctgcacgg aaagattttt caaaacgata atcgataagc gtgttcaggt tttcgtcggc
    39901 ttccatccat acgtcaccac catcaccacc gtcgccgcca tccgggccgc ctttcggaat
    39961 atacttttcg cggcggaagc tcacgcaacc attaccgcca tcacctgcaa cgaccagaat
    40021 cgatgcttca tcaacaaact tcattttatt ctccgtaaat cattcgcctg cgcggggttg
    40081 cgataccacc gttgtatgct tacgtaatcc gccccaaata cgatgaccaa tggcggaata
    40141 catcgcgccc gcaaccacga caaacgcacc gagataacct aaaaggttta acatcggtct
    40201 ggcgaagaaa tcgggccagg ccagtgataa aagatctgaa aaaaacagcg taaacagtgg
    40261 ggtgagcgtg atgatcgcgc tcacctgcgc tgcctgccag cgagccatcg cttccgccag
    40321 ggcgccatat cctaccaatg tattcagtcc gcaaaaaatt aaacatgcga gctgccagtg
    40381 gctaagctgc gctatcactc ctggctttgc cagagggaag agcgcaattg tacataaagt
    40441 gtacagcaaa aacaggatct gcggtgaggc cagccgacgc aataaaacct tttgcgccac
    40501 gccataactc acccaaaccg tcgccgcacc gaccccaaag atgactcccc aggtgtaatc
    40561 agtgagcttt gtaaatatct cgaccagact ggtgttaaaa aacatcacca ggccgctcag
    40621 gagcatcaat gcccctacaa cctgagtgct gcgcattttc tctttcagga taaatacgct
    40681 ggcaaccatc atgccaactg gcgagagttg cccaatcacc tgcgaagcgg tcggactcag
    40741 gtattgcaag gatgagctga acaggatgaa gttcccaaac agcccggcgg tcgccactgc
    40801 caacaaaatc aaccagcgtg gcttacgaaa cacgcgtaat ggcggcaacc tcttcttcac
    40861 cgcaagaatg gcacccaggc caatactcgc catcaagaaa cggtaaaaca cgattgtcgg
    40921 aggttccatc acctccagca cctgcttcat tgcgattggc aacgcccccc agcaaattgc
    40981 tgtggtgagc gccaaaagaa tgccaatgcc tgcctgctgc ttcataccgt attccctgca
    41041 aagcgcattt gcggattaac gtcgcaccat gctcattttt accggttatc gaatgtaaaa
    41101 agccccgcaa cgtgttgcgg ggctttcatc cgttaccggg acgcgaaaaa cttattcagc
    41161 ttcgatgctg ataaatttac ggtttttcgg gcctttaact tcgaatttca ctttaccgtc
    41221 tgctttagca aacagagtgt ggtcacgacc gcaacctacg ttagcgccag cgtggaattt
    41281 ggtaccacgt tgacgaacga tgatgctacc cgccagaacg gattcgccac cgaaacgctt
    41341 aacgcccagg cgtttagctt ctgaatcgcg accgttacgt gtggagccgc cagccttttt
    41401 atgtgccatt tgaaatctct cctcaggtct taggcgctga tgccagtaat tttcacatca
    41461 gtgaaccact gacgatggcc ctgctgctta cgatagtgtt tacgacgacg aaacttaacg
    41521 attttaactt tctcgccacg accgtgagca acaacttcag ctttgattac gccgccatca
    41581 acgaaaggaa cgccgatttt gacttcttca ccgtttgcga tcatcagcac ttcagcgaac
    41641 tcaacagttt cgccagttgc gatgtccagc ttttccaggc gaacggtctg accttcgctt
    41701 actcggtgtt gtttaccacc actttggaaa accgcgtaca tataaaactc cgcttccgcg
    41761 cacacctttt caatgattca gagtgcgcta taaatattca caatagggcg cgaatattac
    41821 gcaaaacgca cgcctttgac aagtgctaca gtcaatacac gaagaaaaaa aacacaactt
    41881 gtacggtaac gtttatctgt gccatttttt cagtacaatc accctatatt cctaaccata
    41941 aaccctaagt tgcctttgtt cacagtaagg taatcggggc gaaaagcccg gcttttgcga
    42001 tgaatttaga aaaaatcaat gagttaaccg cgcaagatat ggcgggtgtt aatgcggcaa
    42061 tccttgagca gcttaattcc gacgtccaac tgatcaatca gttaggctat tacatcgtca
    42121 gcggcggcgg taaacgtatt cgtccgatga ttgctgtact ggctgcacga gctgttggct
    42181 atgagggaaa tgcgcatgtc accattgctg ccctgatcga gtttatccac acggcgactc
    42241 tgctacacga cgacgttgtg gatgaatcag atatgcgcag gggtaaagct accgccaacg
    42301 ctgcatttgg caatgccgcc agcgtgctgg taggcgattt tatttatacc cgcgcgttcc
    42361 agatgatgac cagcctcggt tcactcaaag tgctggaagt catgtcagaa gctgtaaacg
    42421 tcatcgcaga aggtgaagtt ctgcaactga tgaacgttaa cgatccggac atcactgaag
    42481 aaaactacat gcgcgttatc tatagcaaaa ccgcgcgtct gtttgaggct gccgcgcagt
    42541 gttccgggat tctggctggc tgtacgccgg aggaggagaa aggcctgcag gattatgggc
    42601 gctatctcgg cactgctttc cagttgatcg acgatttact cgattacaat gccgatggcg
    42661 aacagttagg taaaaacgtc ggcgacgatc tgaacgaagg taaaccgacg ctgccgctgc
    42721 tgcatgcgat gcatcatggc acaccagaac aggcacagat gatccgtacc gccatcgaac
    42781 agggtaacgg tcgccatctt ctggaaccgg ttctggaagc aatgaacgct tgtggatctc
    42841 ttgaatggac gcgtcagcgc gccgaggaag aagcagacaa agccatcgca gcgttacagg
    42901 tgctcccgga caccccttgg cgagaagcac tcatcggcct cgcgcacatc gctgttcaac
    42961 gcgatcgtta atcccctccc ttcatcccgc gcagtgcgcg ggatgattcc agtaaattcc
    43021 ataaaaacac taattcagcg ctataacacc tgaaaaaaaa gggcgatgaa tctttatata
    43081 ttctgaatat tcacactctt tacaggaact ttttagagca ataggccatc aggagtatag
    43141 tgatgcccga cagaagaagt gttctgaatg aaagcgacta acttaaggag tgaggaaaga
    43201 tggaaagtaa tttcattgac tggcatcccc ctgacatcat tgcaggtttg cgcaagaaag
    43261 gaacgtcaat ggcggcggaa tctcgcagaa atggtttgag ttcctcaacg ctggcaaacg
    43321 cattatcgcg cccatggccg aaaggagaga tgattattgc gaaagccctg ggaactgacc
    43381 cctgggttat ctggccatca cgctaccatg atccgcagac ccatgagttt atcgacagaa
    43441 cgcagttgat gcgtagctac actaaaccga aaaaatgagt ggtctggcgg tagccccgcg
    43501 aacggggctg ccagctctca gacgattact cgcctttcac acgcttaata tttgcaccta
    43561 aagcgcgcag tttgtcttca atgcgttcgt agccacgatc gatgtgataa atacgatcaa
    43621 ccaccgtcgt cccttccgca atacagccag ccagcaccag gcttgctgat gcacgcagat
    43681 cggttgccat aacctgtgca ccagaaagtt tttcaacacc atgacaaata acggtattgc
    43741 tttcgatttc ggcatgcgcg cccatacggc taagctccgg cacatgcata aagcggtttt
    43801 caaagaccgt ttcggtgatg aatccggtcc cttctgccac caggttcaac agcgtgaact
    43861 gggcctgcat atcggtcggg aatgccggat gcggcgcggt acgtacgtta acagccttcg
    43921 gacgtttgcc atgcatatcc aggctaatcc agtcttcgcc gacttcgatg tccgctccag
    43981 cgtcacgcag tttcgccagc acggcgtcga gagtatctgg ctgcgcgtta cggcagataa
    44041 ttttgccgcg agaaatcgcc gccgccacca ggaaagtacc ggtttcgata cgatccggta
    44101 gcacgcgata gacaccgccg cctaaacgtt ccacaccttc gatgacgata cgatcggtgc
    44161 cctgaccgct aattttcgca cccagcgtaa tcaggaagtt cgcggtatcg acgatttccg
    44221 gttcacgcgc tgcgttttca ataatcgtgg taccttccgc cagggttgca gcacacatga
    44281 tggtcaccgt tgcgccaacg ctgactttat ccatcacgat atgtgcgcct ttcagacgac
    44341 catcgacgga agctttaacg taaccttctt ccagtttgat ggtcgcgcct aattgttcga
    44401 ggccagaaat gtgtagatca accggacgcg caccgatcgt acaaccgcca ggcagtgaaa
    44461 cttgcccctg accaaagcgc gctaccagcg gccccagtgc ccagatagaa gcacgcatgg
    44521 ttttaaccag atcgtaaggt gcgcagaata cattaacgtc gcgggcatca atatgcacag
    44581 aaccattacg ttctactttc gcacccagct gacttagcag cttcattgat gtatcgacgt
    44641 ctttcagttt cgggacgttc tggatctcta ccggttcttc cgccagtaga gcggcaaaaa
    44701 ggataggcag agcagcattt ttagcgccgg aaattgtgac ttcgccctgg agcttcgttg
    44761 gcccctgaac acgaaattta tccatttagt ttgttctcag ttaacaattc atatccgcta
    44821 ccggcgaatc gcccatagct caaaagccgt tcagtttgcg atcgcgcgcc cactccgcag
    44881 gggtatacgc tttgatcgac acagcatgaa tgcggttatc cgcaatatat tccatcagcg
    44941 ggccatagac cgtctgctgt tttttaaccc gactcatgcc gtcaaacaac tcacccacgg
    45001 caataacctg aaagtggctg ccatcgccgg aaacgtggac ttcctggagg gagagagcgt
    45061 tcatcaacac gctctgaatt tcattatttt ccatgggatc ttcaatcatc agttaataaa
    45121 ccagcgaaac atcttagagc aaagttgcgc tggcataaat aagcaaaaag cctcgctgat
    45181 aaatcagaca aggctcgact tgcaggcagg tttgccggac aggcggttaa cgccatatcc
    45241 ggcctgaaaa aatttaacga ggcagaacat cagcaggcaa attatacaat ttcgccaggg
    45301 tatacacttt gtcgtttacc ccctgaagcg tcacattgtt gccctgcttt ttcgccagat
    45361 cgataagctg gagcagcagt gccagtcccc ccgtatccac gcgggacaca cggctaagat
    45421 cgatgcaggt aatccccttc accgcttcct cacgcatttc ccaaagcggt agcaaaacgt
    45481 cctgatccag ctctccggat aacgccagcg tgtcacccgt ctgcatccag ctcagtgact
    45541 cgctcattat tttttctctt ccagagtgat tttctgttga gaaatcgatt tcagttgcgc
    45601 agtcaggccg tcgatacctt tggtacgcag cagcgttccc cactcgtttt gtttggtggt
    45661 gatcatactg acgccttcag caatcatgtc gtaagcctgc cagttgcccg tctgggagtt
    45721 tttacgccac tggaagtcca gacgcaccgg cgggcggcca ttcggatcaa taatggtaac
    45781 gcgaatcggc acaatggttt tatcgcccag cggctgttct ggcgcaatct gataggtttg
    45841 accatgatac atcgccagcg cctgaccgta agcctgcttc aggtactcac ggaaagcggc
    45901 aaagtaggct tcacgttgag caggggtcgc actcttgtaa tactggccca gcaccagcgc
    45961 accggcgtat ttcacctgta cgtatggcag cagttcctga tcaacaatgg tacgcagata
    46021 atccgggttg gcccgaattt gcggttgctc attcttcagg cgatcgaacg ttttctgcgc
    46081 cgcctcgtcc atcagcttat aaggattggt ctggtctgcc gcggttgccg cactcagcgg
    46141 tgcaatcacc agcaaagcga ccatcattaa acgtttaaac atgcgtcggt tctcctgaaa
    46201 ttatttcgtt gtacccacag gttcagtggt ttcattatta cctggcgcag cagctggcgc
    46261 atcgccacta ttcttattgt catcgccttt actaccgtaa aggaactgac caatgagatc
    46321 ttccagcacc atcgcagact tagtgtcctg aattgtatcg ccatccttca ggatagcagt
    46381 ccccagttcc gggtcttcaa aaccgacgtt taatgccaga tattgttccc ccagtaggcc
    46441 ggaagtacga atgctcagcg aactggtatc tggaatgtgg ttataacgtt gttcaatttc
    46501 cagcgttacg cgtggcagat aggttttcgg gtccagcgta atatccgcca cccggcccac
    46561 aacaacgcca ccaatactga ccggagagcg cgctttcagg ccgccaatgt tatcgaacgt
    46621 cgcataaagc gtgtaggtcg gttcagtacg tatggacgtc acgttcgccg ccttcaggca
    46681 aacaaacaga gccgccagca gtgctgctaa taaaaagata cccacccaaa tttcattttt
    46741 tttcgtttgc atgtactcaa ttcccaaaca tcaatgcggt cagcacaaaa tccagcccca
    46801 gaacagccag agacgagtgg acaacggtgc gagtggttgc ccggctaatc ccggcagacg
    46861 tcgggatggc gtcgtagccg ttaaacaacg aaatccacgt caccgtgatg gcgaacacca
    46921 cgctcttaat cagacagttg accagatcca tacgccagtc gacggcattt tgcattgccg
    46981 accagaagaa cccgctatca atgcctttcc aactgacgcc gaccagagat ccgccccaga
    47041 tccccacggc gacgaaaata accgtcaaca gtggtaatga aataacccca gcccagaaac
    47101 ggggagaaat aacccgacgc agcggatcca ccgccatcat ctccatactg gagagttgct
    47161 ctgtagcgcg catcaggccg atttctgcgg ttagcgccga accagcacgc ccggcaaaca
    47221 acaacgcggc aaccaccggc cccagttcac gcagtagcga taacgccacc agcataccca
    47281 gactggtttc cgcactataa gtggtcagaa ccagataacc ttgcagcccc aacaccattc
    47341 cgatgaacac gccagaaacc acaataatca gcatcgacag gacgccgaca ttatagagct
    47401 ggcgcaccag cagcggcgca tgtttgcgaa attccggttt gccgaccagc gcattgaata
    47461 acattaaccc ggcccgcccg aacgttctca gggttttaat ccctttatgt ccgagcgacg
    47521 ccagcgcatt taacagcatg agtggcttaa ctccctggta aaagatcagc gtgataatcg
    47581 ccggcaggat agcggaacgg aacaggcccg tcagctatcc cgtccagaaa ctgacgtacg
    47641 cgcggatcag gattcgcctg caacgcctgg gcactgccat gagcgacaat ttttttgtcc
    47701 gccaggatcc aggcgtgatc cgcaatactt aacacttccg gcacatcgtg agaaaccacc
    47761 acacaagtca cgcccagcgc gctgttcagc tcagaaatca gcttcaccag tacgcccatg
    47821 gtgatgggat cttgcccaac aaaaggttca tcaaacatga tgagatccgg ctccagcgca
    47881 atcgcacgcg ccagcgctgc acgccgcgcc atcccaccgg aaagttcaga aggcattagt
    47941 ttagccgctc cacgcagccc cacggcctcc agcttcatca tcaccgtact atgcaacaat
    48001 ggcgcgggaa gttgggtatg ttcgcgcagt ggataggcga cgttgtcaaa tacgttcata
    48061 tcagtgaaca acgccccgga ctgaaataac atgctcatcc gtttgcgcac tgtatacagg
    48121 cgcgaacgag acatcgccgg aatattctca ccatcgaaaa ggatctcacc atgatctggt
    48181 gcgatttgcc cgccaatcag acggagtagc gtcgttttac cgatgcccga tggccccatg
    48241 atcgccgtga tcttccctcg cggcacggtc agggaaatat tatcgaagat gcagcgattg
    48301 ccacgcgtaa aactgacatc gcgcatatcg actaaattcg ccacagactg ctccataatt
    48361 cacccttcgt cttgcgttga ttttctaagc atggcgctca atttaacctt gaacccaaca
    48421 tatttacaga atattacccg ccgtggttag cgaaagctgg catttgtttt actttttagc
    48481 cgcataaagt caaaattaag aatccgttac ggctttctga aaatcttcag cggaccggcg
    48541 agtatacctg aagaaaggac gttagatgct tttagctacg gcactgttaa ttgttggttt
    48601 acttttggtc gtttacagtg ccgaccgcct ggtttttgcc gcgtctattc tttgccgaac
    48661 ctttggcatc ccgccgctga tcatcggcat gacggtggtc agtattggta catcgttacc
    48721 agaaatcatc gtctcgcttg ccgcgtctct gcacgaacaa cgcgatttag ccgttggtac
    48781 agccctcggc tcaaacatta tcaatatttt gctgatcctc ggtctggctg cgctggttcg
    48841 tccttttacc gtccattccg atgttctgcg tcgtgaatta cccttaatgt tgttggtcag
    48901 cgtagtggcc ggttccgtac tctatgacgg acaacttagt cgcagcgatg gtatctttct
    48961 cctctttctg gctgtgctat ggctgctgtt cattgttaaa cttgcacgtc aggctgaacg
    49021 tcaggggact gacagcctga ccagagagca gcttgcagag ctgccgcgtg acggcggatt
    49081 gcccgtcgcg tttttatggc tcggcattgc gcttatcatc atgccagtgg ccacgcggat
    49141 ggtggttgat aacgccacgg tgctggcgaa ttactttgcc atcagcgagt tgacgatggg
    49201 tctgacggca attgctatcg gaaccagcct gccggaactg gcaaccgcaa tagcgggggt
    49261 tcgcaaaggt gaaaacgaca ttgctgtcgg aaatatcatt ggcgcaaaca tttttaatat
    49321 tgtcatcgtg ttgggtttac ccgcgctgat aacaccagga gagattgatc cattggcgta
    49381 cagtcgtgac tacagcgtga tgttgctggt gagcattatt tttgcgttgc tgtgctggcg
    49441 gcgctccccg caaccgggcc gtggtgtagg ggtattatta actggcggat ttatcgtatg
    49501 gctggcgatg ttgtactggt tatcgccaat actcgttgaa taactggaaa cgcattatgt
    49561 cgcacgtaga gttacaaccg ggttttgact ttcagcaagc aggtaaagaa gtcctggcga
    49621 ttgaacgtga atgcctggcg gagcttgatc aatacatcaa tcagaatttc acgcttgcct
    49681 gtgaaaagat gttctggtgt aaagggaaag ttgtcgtcat ggggatgggg aaatcggggc
    49741 acatcgggcg caaaatggcc gcaacgtttg ccagcaccgg tacaccttca tttttcgtcc
    49801 atcctggtga agccgcgcat ggtgatttag gcatggtcac cccacaggat gtggtgattg
    49861 ctatctctaa ctcaggtgaa tccagcgaaa tcacggcctt aattccagtg cttaagcgtc
    49921 ttcacgtacc gttaatctgc atcaccggtc gcccggagag cagcatggcg cgcgccgcag
    49981 atgtgcatct gtgtgttaaa gtagcgaaag aagcctgtcc gttagggctg gcaccgacca
    50041 gcagcaccac cgccacgctg gttatgggcg atgccctcgc tgtcgcgctg ttaaaagcac
    50101 gcggctttac tgctgaagat tttgcgctct cacacccagg cggcgcactg ggtcgtaaac
    50161 ttctgctgcg cgtaaacgat attatgcata cgggcgatga gatcccgcat gttaagaaaa
    50221 cggccagtct gcgtgacgca ttgctggaag ttacccgcaa aaatcttggt atgactgtca
    50281 tttgcgatga caatatgatg attgaaggca tctttaccga cggtgattta cgccgtgtct
    50341 tcgatatggg agtggatgtt cgtcagttaa gtattgccga tgtgatgacg ccggggggaa
    50401 tacgcgtgcg ccctggcatt ctggccgttg aggcactgaa cttaatgcag tcccgccata
    50461 tcacctccgt gatggttgcc gatggcgacc atttactcgg tgtgttacat atgcatgatt
    50521 tactgcgtgc aggcgtagtg taaagattca aggataaaca acaatgagca aagcaggtgc
    50581 gtcgcttgcg acctgttacg gccctgtcag cgccgacgtt atagcaaaag cagagaacat
    50641 tcgtctgctg atcctcgacg ttgatggcgt actgtcagat ggcctgattt atatgggcaa
    50701 taacggcgaa gagctgaaag cgttcaatgt tcgtgacggt tatggcattc gttgtgcgct
    50761 cacctctgat attgaagtcg ctatcattac cgggcgaaag gctaaactgg tagaagatcg
    50821 ttgtgccaca ttggggatca ctcacttgta tcaggggcag tcaaacaaac tgatcgcctt
    50881 tagcgaactg ctggaaaaac tggcgattgc cccggaaaat gtggcttatg tcggcgatga
    50941 tctcatcgac tggccggtaa tggaaaaagt gggtttaagc gtcgccgtgg ccgatgctca
    51001 tccactgttg atcccgcgcg ccgattatgt gacgcgcatt gctggcggtc gtggcgcagt
    51061 gcgagaagtt tgcgacttat tactcctggc gcagggcaaa ctggatgaag ccaaagggca
    51121 atcgatatga gtaaagccag acgttgggtt accattgtgc tatcactggc ggttctggtg
    51181 atgatcggca ttaatatggc cgaaaaagac gataccgccc aggtggtcgt caacaacaat
    51241 gatcccacct ataaaagcga gcatacggac acgctcgtct ataacccaga aggggcacta
    51301 agctatcgat tgattgctca acacgttgaa tattattccg atcaggccgt ttcgtggttt
    51361 acgcagccgg tacttaccac gtttgataag gataaaatcc cgacatggtc cgtaaaagca
    51421 gataaagcca agctgaccaa tgaccggatg ctctatttat atggacacgt tgaagtcaac
    51481 gcacttgtgc cggactctca acttcgcaga atcacgacgg ataacgcgca gatcaatctg
    51541 gtgacgcagg atgttacctc tgaagacctc gtcacgttat acggaacaac atttaactcc
    51601 agcggtctga aaatgcgcgg caacttacgc agcaagaacg ccgagctgat tgaaaaggtt
    51661 agaacatcct atgaaattca aaacaaacaa actcagcctt aatcttgtgc ttgccagctc
    51721 acttctggcc gccagcattc cggcatttgc cgtaaccgga gacactgatc agccgatcca
    51781 cattgaatcg gaccagcaat ctcttgatat gcaaggcaac gtggttacct ttaccggtaa
    51841 tgtcatcgtc acccagggca ccatcaaaat taatgccgac aaagtggtcg ttacccgtcc
    51901 gggcggcgaa caaggtaaag aagtgattga cggctacggt aaaccggcaa cgttctacca
    51961 gatgcaggac aacggtaaac ccgttgaagg tcatgcttcc cagatgcact acgaactggc
    52021 aaaagatttt gtcgttctga cgggtaatgc ttatctgcag caggtcgata gcaacattaa
    52081 gggcgataag atcacttacc tggtgaaaga gcagaaaatg caggctttca gcgacaaagg
    52141 caagcgcgta acaaccgttc tggtgccgtc gcagctgcag gacaaaaaca acaaaggcca
    52201 gaccccggca cagaagaagg gtaattaatt cgttatggca acattaactg caaagaacct
    52261 tgcaaaagcc tataaaggcc gtcgcgtggt agaagacgtc agcctgaccg tcaactccgg
    52321 ggaaattgtc ggtctgctgg ggccaaacgg tgccggtaag accaccactt tctatatggt
    52381 tgttggcatt gtgccgcgcg atgcgggcaa catcattatt gatgatgacg atatcagtct
    52441 gctgcctctg catgcacgcg cgcgccgcgg tatcggctat ctgccacagg aagcctccat
    52501 tttccgtcgc ctcagcgttt acgataacct gatggcggta ctgcaaattc gtgacgactt
    52561 gtctgctgaa caacgtgaag accgcgcgaa cgagctgatg gaagagtttc acattgagca
    52621 cctgcgtgac agcatggggc agtcactctc cgggggtgaa cgtcgccgtg tagaaattgc
    52681 ccgcgcactg gctgcgaatc cgaaatttat tctactcgac gaaccgtttg ccggggttga
    52741 cccgatctcg gttatcgaca ttaaacgcat cattgaacac ctgcgcgaca gcggcctggg
    52801 cgtactgatc actgaccaca acgtgcgtga aacactggcg gtttgtgaac gcgcttatat
    52861 cgtcagtcag gggcatttga ttgcccacgg cacgcctaca gaaatcttac aagacgaaca
    52921 cgttaagcgt gtataccttg gggaagactt cagactctga tagggtagaa gtttgcgacg
    52981 ttttagcagg agagtacgat tctgaacatg aagcaaggtt tgcaactcag gcttagccaa
    53041 caactggcga tgacgccaca gcttcaacag gcgattcgtc tgttgcagtt gtcgacgctg
    53101 gaacttcagc aggagctaca gcaggcgctg gagagtaatc cgctgcttga gcaaatcgac
    53161 actcatgaag aaatcgacac cagcgaaacg caagacagtg aaacgctgga caccgccgac
    53221 gcgctcgaac aaaaagagat gccggaagag ctgccgctcg atgccagttg ggacaccatt
    53281 tacaccgctg gtacaccatc cggcaccagc ggtgactaca ttgacgatga gctgccggtc
    53341 tatcagggcg aaacgacgca gaccttgcag gattacctga tgtggcaggt cgagctgaca
    53401 ccgttttccg acactgaccg cgctattgct acctctatcg tcgatgccgt tgatgacacc
    53461 ggttatctga ctgtcccgct ggaagatatt ctcgaaagta tgggcgatga agagatcgac
    53521 atcgacgagg ttgaagccgt ccttaagcgg atccaacggt ttgatccggt cggtgtagcg
    53581 gcaaaagatc tgcgtgactg cctgctaatc caactctccc aattcgataa aaccacgccg
    53641 tggctggaag aggccagact gatcattagc gatcatctcg atctgttagc caatcacgac
    53701 ttccgcactt taatgcgcgt cacgcgtctg aaagaagatg tgctgaaaga agccgtcaat
    53761 ctgatccagt cgctcgatcc gcgccccggg cagtcgatcc agactggcga acctgagtat
    53821 gtcattccag atgtgctggt gcgtaagcat aacggtcact ggacggtaga actcaacagt
    53881 gacagcattc cgcgtctgca aatcaaccag cactacgcct cgatgtgcaa taacgcgcgc
    53941 aacgatggtg acagccagtt tatccgcagc aatctgcagg atgccaaatg gttgatcaag
    54001 agtctggaaa gccgtaacga tacgctactg cgcgtgagtc gctgtatcgt tgaacagcag
    54061 caagccttct ttgagcaagg tgaagaatat atgaaaccga tggtactggc cgatatcgcc
    54121 caggctgtcg aaatgcatga atcgacgata tctcgcgtga ccacgcaaaa atacctgcat
    54181 agtccacgag gcatttttga actgaagtat ttcttttcca gtcacgtcaa taccgagggc
    54241 ggcggcgaag cttcctccac ggcgattcgt gcgctggtga agaaattaat cgcggcggaa
    54301 aacccagcga aaccgttgag cgacagcaag ttaacctctt tgctgtcgga acaaggtatc
    54361 atggtggcac gccgcactgt tgcgaagtac cgagagtctt tatccattcc gccgtcaaac
    54421 cagcgtaaac agctcgtttg acccaaccga taaggaagac actatgcagc tcaacattac
    54481 cggaaataac gtcgagatca ccgaggcact gcgcgaattt gttagagcca aatttgccaa
    54541 acttgagcaa tattttgacc gaatcaacca ggtctatgtt gttctgaaag tggagaaagt
    54601 cacccacacc tcagatgcaa cactgcatgt aaacggtggt gaaattcatg ccagcgcgga
    54661 aggtcaggac atgtacgctg ccattgatgg cttaattgat aagctggcac gccagttgac
    54721 caaacataaa gataaactga aacaacacta attgtccggg caattagcat gtgcatggcg
    54781 gcctgttgtg cggcacaacg ggccatttgt acggttaatg ctccgagcct gttccactgt
    54841 ttgagtgggc aggttcttag gtgaaattat gacaaataat gatacaactc tacagcttag
    54901 cagtgttctt aacagggaat gtacgcgaag ccgcgttcac tgtcagagca aaaaacgcgc
    54961 cctggaaatc atcagcgagc tggcggcgaa acaacttagc ctgccgcctc aggtggtttt
    55021 tgaagctatc ctgacgcggg aaaaaatggg cagtaccggt atcggcaatg gtattgccat
    55081 tccgcatggc aaactggaag aagatactct gcgcgccgtt ggcgttttcg ttcagctcga
    55141 aacgcctata gctttcgatg ccatcgacaa ccaaccggtg gacttacttt ttgccctgct
    55201 ggtgccggca gaccaaacta aaacgcacct gcatactctg tcgctggtgg cgaaacgtct
    55261 ggcggacaaa accatctgcc gccgtttacg cgcagcccag agcgatgaag agctgtatca
    55321 aatcattacg gataccgaag gtactccgga tgaagcgtag ttattcggta atgtctcttt
    55381 tagacgttgt gaggagaaac agtacatggt actgatgatc gtcagcggac gttcaggttc
    55441 aggtaaatct gtcgccctgc gtgcgctgga agatatgggt ttttactgcg tggataacct
    55501 tcccgtagtg ttgttacccg atctggctcg aaccctggcc gatcgcgaga tttctgccgc
    55561 cgtcagcatt gatgttcgta atatgccgga gtcaccagaa atattcgaac aggcgatgag
    55621 taacctgcct gacgctttct caccgcaact cctgttcctg gatgccgacc gtaatacctt
    55681 aattcgtcgt tacagtgaca cgcgccgact gcatccgctt tccagcaaaa acctgtcgct
    55741 ggaaagtgct atcgacaaag aaagcgattt gctggagcct ctgcgttcgc gagcggatct
    55801 gattgtcgat acctcagaaa tgtccgttca cgagctggct gaaatgctgc gtacccgtct
    55861 gctgggtaaa cgtgaacgcg aactgaccat ggtctttgag tctttcggct tcaaacacgg
    55921 tatccctatc gatgcagatt acgtctttga cgtgcgcttc ttgccgaacc cgcactggga
    55981 tccgaaactg cgtccaatga caggtcttga taaacctgtc gccgcgttcc tcgaccgcca
    56041 cacagaagta cacaatttta tctaccagac gcgaagctat cttgagctat ggttacctat
    56101 gctggaaacc aacaaccgta gctacttgac ggtcgccatt ggttgtaccg gcgggaagca
    56161 ccgttcggtg tatattgcag agcaactggc agactacttc cgctcgcgcg gtaaaaacgt
    56221 ccagtcacgc catcgtacgc tggaaaaacg taaaccatga ccgtcaagca aactgttgaa
    56281 atcacaaaca agctgggcat gcatgcccgg cctgcaatga agctgtttga attaatgcag
    56341 ggttttgacg ctgaagtgct gttacgtaat gacgaaggca ccgaggccga agccaacagc
    56401 gttattgcgc tgctgatgtt ggattctgcc aaaggacggc agattgaagt tgaagcgacc
    56461 ggcccacagg aagaggaagc actggccgcc gttatcgccc tctttaactc tggttttgat
    56521 gaagattaat cttcatcact ttgacataca actcccttca aactcccccc gacaataaga
    56581 aaatcacgta ctgaaatcgt tctcaatcaa cgtcatttgt acattttgtg cgcttttcac
    56641 tttcagaaga accttaagaa aaccttaaga ggcattgttt aggttttgtt taagttaatc
    56701 gaccatactg gagatcgtca gaaaatattt ccaggagatg gcatgattcg cttatctgaa
    56761 caaagtcccc tgggcaccgg aagacatcgg aaatgttatg cgcatccgga agatgcccaa
    56821 cgctgtatca agattgtcta ccatcgtggc gatggtggcg ataaagagat ccgccgtgag
    56881 ttaaagtact acgcgtatct tggtcgccgg ttaaaagact ggagtggaat accgcgctat
    56941 cacggtaccg ttgagacgga ttgcggaacc ggttatgtct acgatgtgat tgcagatttt
    57001 gacggcaaac cctccattac gctgaccgaa tttgctgaac aatgccgtta cgaagaagac
    57061 attgcacaac tgcgccagct actgaaacag ctgaagcgtt atttgcagga taaccgtatc
    57121 gtgacgatgt cgctgaagcc gcagaatatc ctctgtcacc acatcagtga gtcagaggtt
    57181 atcccggtcg tctgcgacaa cattggtgaa agcacattga ttccactggc gacctggtcg
    57241 aagtggtgtt gtctgcgtaa gcaagagcgg ttatggaaac gatttatcgc ccaaccggcg
    57301 ctggctattg ccctgcagaa agatctgcaa cctcgtgaga gcaaaacgct ggccctcact
    57361 tcgcgcgaag cttaatccag ctggtgttgt tgcataaacg gctcaccgcc taactgatac
    57421 atctgccgta aaatccacgc ctgacggcta cgcacgtagc ccgatggcga ggagactttg
    57481 aaacgaagtg gattaggtaa tacagctgcc agtaatgcag cttccgaccg ggtaagtttg
    57541 ctcgcgggtt tgtggaaata acgttgtgcc gcagcttcga cgccaaacac accgtcgcca
    57601 aattcggcga tattcaggta aaccgtcagg atacgctttt tgctccagac tgtttctatc
    57661 cccagcgtta atccagcttc cagccctttt cgtacccagc tacgcccatc ccataaaaag
    57721 agatttttgg ccgtctgctg agaaatcgtt gaagcaccgc gaatacggtt ttcattgcgc
    57781 tcgttgtgcg ccagggcttt ctcaatggaa gcgacatcaa agccccggtg ctcaggaaat
    57841 ttctgatctt ctgcggcaat caccgccagt cccatccact gcgagatttg atccatactg
    57901 acccagtcag aatgtgccac gtaacgaaaa ttgccatgca gccaggcgct gacctgtcgc
    57961 tcgaccatta ccgctgagaa gggaacaggc gcaacactaa acaacgcgat gcccccgccc
    58021 cagaaaacgg cgaggacaac cattaaccgc aaaagaaaac ggcgaacgaa actaaacacc
    58081 gttaagcggc ttttactcat tcagccagaa ccagcacgcg ggaaaccagc ttatcaatgc
    58141 cgctcgccgc ttctgcaatg ttctgcgcca gcatatatgc tggggtggtg acaatcttat
    58201 tgtcttcatc aaccacgata tcatcgacag gacagggcac atgctccgcg cccatctctt
    58261 ccagcacttc tgcggtatcg atatcagtac cgatggtcaa acgcagcggg aaatcgaaaa
    58321 ttttcggcag catcgccggg gcaatacaca taaaaccaag cggttttccg gcctgatgca
    58381 tcgcttgtgc cagcgccttt aattcacggt caacggtgca ttcgctacca agagtggcaa
    58441 aattgcttaa attcttcgcc gcgccaaacc cccccggcac aatcaacgca tccagttcag
    58501 cggcatcggc ctgggccaga ggacggattt caccgcgcgt tattcgtgcc gcttcaatca
    58561 gcacgttgcg cgtttccgtc atcgcttcgc cagttaaatg gttgataaca tcaacctgct
    58621 gcttatcagg tgcaaagcag accgcctgcg caccgctgcg tgaaatagct aacaacgtca
    58681 acaccgcttc atgaatttca gaaccgtcat agacgccgca tccgctcaga attacgccaa
    58741 ttttcttcat tgtgatcatc ctttcgcaat tgactgaaac acattaattt ttttaataaa
    58801 aatggtacgc atcacacatt taactgattc atgtaacaaa tcatttaagt tttgctatct
    58861 taactgcgtg cggcctgaaa aacagtgctg tgcccttgta actcatcata ataatttacg
    58921 gcgcagccaa gatttccctg gtgttggcgc agtattcgcg caccccggtc tagccggggt
    58981 cattttttag tggcttttgc cacccacgct ttcagcactt ctacgtcgtg acgccactct
    59041 tctttcatct cttcaatcca ttcaccgacg ttatcttccc aggcaggaag gtcaggagac
    59101 tgaatttgct gacccagctg ttgcagatgg cgtaacccca ctgaccccgc cgcaccttta
    59161 attttatgtc cttcctcaac aatgcctttt ttatcctgcg ccgtcagatt cgactccagc
    59221 acgctgacat agcccggcat catcttctca aacaccgcta acccgtcggt gatcagcttc
    59281 ggtcctacaa gttcgagata ctgttccagc atgggaatat cgagcaatgc ttctgattta
    59341 ctgttctctt ctgtcgtcac cgtactctcc tcatcatcct gggtatccca gaatttcttg
    59401 atcatcgcgg ttagcgccgg aaccgaaagc ggcttactca gcacatcatc cattccagca
    59461 ttgaggtact cttgtttgtc tttcagcacg ttagcggtta aggccaccag cggcggtaaa
    59521 tcctcgcgcg gataacgctt cgtcagttca cgagagatat ccagcccggt catatctggc
    59581 aactgaatat ccagcaacac caggtcgtat tcgcccggtt taaacatctc cagcgccgcc
    59641 ttgccggtca tggcgacatc aacgctgtta cctaattttt ccagcacaga acgcgcaaca
    59701 atcacgttca gttcaatgtc ttccaccagc agcacattca gcgccggtaa aggcatatcg
    59761 tcttcatcaa acgcatcatc gacctcttct gctaccgacg gtgcgtggat cgtcaacgta
    59821 aaggttgaac ctttgccctg ttcgctggta accgtaatat cgccgcccat atttttcgcc
    59881 agacgacgag aaacggccag accaataccg gtgccggtgg caggtttacc gccatgactg
    59941 tctttcacct ggtaatacat ggcgaaaatt ttatccagct catcctgcgg aatgccgata
    60001 ccagagtctt ccacttcaaa atgcagcata tcgccttcat cgtagcgcac gcgcacggta
    60061 acctggcctt gctgggtgaa tttgacggcg ttactgatga ggttccacag gatctgccgt
    60121 aaacgcgtcc cgtcggtaat gacctgatgc ggtaatggca gcgtcggctc caggttaaag
    60181 cgcaatcctt tttgttgcgc ctgcaatgcg gagagatttt ccagatcggc aaggaagctg
    60241 gtgaaatcaa ccggttgatt atcaagctgg accttgcgcc gttccatctt atccatgtcg
    60301 ataatatcgt taaagatatt ccccagcgtg acggccgaaa catggatggt cttgagatat
    60361 ttttcctgct cggcggtgag ttcggtatcc agcagaatgc ggctcagacc gacgataccg
    60421 ttcagcggtg tacgcaattc gtgactgatg gtggagataa acgtcgtttt gtcgcggctg
    60481 gcccgttcaa gcgcatcctg ataccgctta cgctcggtaa tgtcgcgacc aaagcccatc
    60541 aaaccgtgac gtttacccac gcggtcgtag tacggcactt tacggatttc aaagcaggct
    60601 ttgcgcccgt ccgggtaatc cagccactgt tcataggtca gtgacacatt atgacggaac
    60661 actttttcat cggtttcaat gacttttgcg gcggcttccg gtgagtaaac atcagcaggt
    60721 ttcaggtgaa ccagttgttt ttcgcttttt ccggtcagca gctccatcgc gcggttacag
    60781 ccggaaaact ctttatcttc gttacgataa aaaaccaggt cgggtgaagc atcaaggaag
    60841 gaacgtaaga atgaggattg ctgctcgagc tgaatttgtg tctcttcgcg ctctttgatt
    60901 tcaattttca gttggccgaa ggtttcctgc agttctgctt ccgctttttc acgaacggca
    60961 atttcctgat ttagctgggc aatattatct tttaactgaa cgttgaggct caaatcgcgc
    61021 tcgcgcatct cctccagttt ttgcaccagc cgtgacagac gttgtcgtga ctcctccagt
    61081 tgctcgacga ccaccgatag aaagtagacc gcccacggcg taatcagcaa accaaagaag
    61141 atagaacgaa taacatcaat gctttcgacc tgaccatgca gcaccatggt taccgccatt
    61201 tgtaccacaa tggcaagaac gacgagggcc agcgccagca acattgagaa gcgcaccaga
    61261 cctaacttca tcatcaggtc aacataatac tgcgccagca gacgaatttg cttcattagg
    61321 gaattccttc acgacaacct gccccaataa tacccaattc tgacagttac gttataaatt
    61381 gtgtgagaaa tgcggaattc ccctcaacga cctactccgt tggaggtagc cacggacgtc
    61441 ccagcgccga tccctgtacg ccatgttcat tcagatagcg atccagctcg accattcccg
    61501 tccatcgatt ttcgcaccac agcggagcaa gcagcgtcgg gcgacgggcg ctggcggaaa
    61561 tgcggtggta gatcacttcc ggtggcgtat ggcgaatcat ttctccggca gtgagcgtgt
    61621 aatcctccag ttcaataccg ttcaaacgcc ccgcttccca ggctttcgcc ataatgctgc
    61681 ctttcacaat atgcagcgga tgcagcttta tgccgtccac gccggtttca accactcgct
    61741 ccagcgtttg caaacattca gcctgccctt caccaggcag gccgacaatt aagtgggaac
    61801 acaccttcag cccgcgctga cgtgccagct gggttgtacg ctgataacag gcaaaatcat
    61861 ggccgcggtt gatgcgatgc agtgttttgt cgtgggcggt ttgtagcccc agctccagcc
    61921 acacttcgta accctggtcc ttatattcgc aaagcagatc cagcaccgca tccggcacgc
    61981 agtccgggcg ggtaccaaca cacaaaccga caatattggc ctggctcacc gcctgctgat
    62041 acatagaacg cagcacctga acttccgcaa aggtgctagt atacgcctga aagtaggcca
    62101 gatagcgttt agcgcggtta actaaattcg cctggtgcgc cagttgctcg gcaatggaac
    62161 gatgctgctg cgcttcatcg gcaaacgagg caacattaca gaatgtgcag ccaccacgcc
    62221 cgatggtacc gtcacggtta gggcagctaa aaccgccgtg cagcgtcagc ttatgcacct
    62281 tttgcccata acgacgggtg agatcaccac caaacatatt gactaatttc tgtaactgca
    62341 taatctgata gaccgcgcct tgaaaagagg ccaaagcctg ccatttttag ctcaattcgg
    62401 cgatgacctg gatcaatcgt cccggcctgc ttttatcaac tgcataatca atcaaaatta
    62461 ccgaaatttc atgcataatc acataaatca cttttgctta tcttgtgtca gattttttta
    62521 tctccttatg gattttaggc aaaaacagta gcatgaaacg tcattaccaa ttaaggcagt
    62581 ataaaatgct ggttttctcg tcagttcaag gtaggataag ggttaacacg cctttatgac
    62641 agtcaggaat tgactgtttc tctaacgact tcccttttag ccttaaagat aaaattcatt
    62701 ttaatttcag ttacttaata aagaattttg cgctaaagca catttctgta ccaataagct
    62761 tgccatttga cctgtatcag ctttcccgat aagttggaaa tccgctggaa gctttctgga
    62821 tgagcagcct gctcatcata tttatgcagt aattgagatc ccctcttcac cgtattaacc
    62881 gatgcgaaaa ggacaacaag ggggcgaata cgaggcgcgc gtatgacacg caacccccgt
    62941 cgccacgctc tttctgtgcc cgtgcgcagc ggttcggaag tggggttccc gcagagcctg
    63001 ggggaggttc acgatatgtt gtacgataaa tcccttgaga gggataactg tggtttcggc
    63061 ctgatcgccc acatagaagg cgaacctagc cacaaggtag tgcgtactgc aatacacgca
    63121 ctggcccgca tgcagcaccg tggcgcgatt ctcgccgatg gtaaaaccgg tgacggttgc
    63181 ggcttgctgt tacaaaaacc ggatcgcttt tttcgcatcg ttgcgcagga gcgcggctgg
    63241 cgtttagcaa aaaactacgc tgtcgggatg ctcttcctga ataaagatcc tgaactcgcg
    63301 gctgccgcac gccgcatcgt tgaagaagag ctgcaacgcg aaaccttgtc gattgtgggc
    63361 tggcgtgatg tccccactaa cgaaggcgtg ctgggtgaaa tcgccctctc ctctctgccc
    63421 cgcattgagc aaattttcgt taacgctccg gcaggctggc gtccgcggga tatggagcgc
    63481 cgtctgttta tcgcccgccg ccgcattgaa aagcgtctcg aagccgacaa agacttctac
    63541 gtctgtagcc tgtcgaatct ggtgaacatc tataaaggtc tgtgtatgcc ggcggatctg
    63601 ccgcgctttt atctggatct tgcggacctg cgtctggaat cggccatctg cctgttccac
    63661 cagcgcttct ccactaacac cgtaccgcgc tggccgctgg cgcagccgtt ccgctacctg
    63721 gcgcataacg gtgaaatcaa caccatcacc ggtaaccgcc aatgggcgcg tgcgcgtacc
    63781 tataaattcc agacgccgct tatccctgat ctgcacgacg ccgcaccgtt cgtcaacgaa
    63841 accggctctg actccagttc gatggataac atgctggaac tgctgctggc aggcgggatg
    63901 gatatcatcc gcgccatgcg tctgttagtg ccacccgcct ggcagaacaa cccggatatg
    63961 gacccggaac tgcgtgcctt ctttgacttt aactccatgc atatggagcc gtgggatggc
    64021 ccggcgggca tcgtgatgtc cgacggtcgt tttgccgcct gtaacctcga ccgtaacggt
    64081 ctgcgtccgg cgcgctacgt catcaccaaa gataagctca tcacctgcgc ctctgaagtc
    64141 ggtatctggg attaccagcc tgacgaagtg gtcgaaaaag gccgcgtcgg gccaggcgaa
    64201 ctgatggtta tcgacacccg cagtgggcgt attctgcact cggcagaaac cgatgacgat
    64261 ctgaaaagcc gccatccata taaagagtgg atggagaaaa acgtccgccg actggtaccg
    64321 tttgaagatc tgcccgatga agaagtgggt agccgcgaat tggacgacga cacgcttgcc
    64381 agctaccaga aacagtttaa ctacagtgcg gaagagctgg actccgtaat tcgcgtactg
    64441 ggcgaaaacg gtcaggaagc ggtcggttcg atgggcgatg ataccccatt cgccgtgctc
    64501 tccagtcagc cgcgcattat ttacgactac ttccgccagc agtttgccca ggtgactaac
    64561 ccgccaatcg acccgctgcg tgaagcgcat gttatgtcgc tcgccaccag tatcggtcgt
    64621 gaaatgaacg tcttttgcga agcagagggc caggcgcacc gtttaagctt taaatcgccg
    64681 attctgctct actccgattt caaacagctc acgacgatga aagaggagca ctaccgcgca
    64741 gatacgctgg atatcacctt tgacgtcact aaaaccacgc tcgaagcgac agtcaaagag
    64801 ctgtgcgaca aagccgaaaa aatggtacgt agcggcaccg tgctgctggt gctctccgac
    64861 cggaatatcg ctaaagatcg cctgccggtt ccagccccga tggcggttgg cgcgatccag
    64921 acccgtctgg tcgatcaaag cctgcgttgc gatgccaaca tcatcgtcga aaccgccagc
    64981 gcccgcgatc cgcaccactt cgccgtgttg ctgggcttcg gcgcgacggc tatttatcca
    65041 taccttgcct atgaaacgct gggccgcctg gttgacaccc atgcgattgc caaagattat
    65101 cgtaccgtga tgctcaacta ccgtaacggc atcaacaaag gcttgtacaa aatcatgtcc
    65161 aaaatgggca tctccaccat cgcctcttac cgctgctcga aactgtttga agcggtcggt
    65221 ctgcacgatg atgtagtggg cctgtgcttc cagggggcgg tcagccgcat tggtggggcg
    65281 agctttgaag acttccagca ggatctgctg aacctgtcga aacgtgcctg gctggcgcgt
    65341 aagcccatca gccagggcgg cctgctgaaa tacgtccacg gcggcgaata ccacgcttac
    65401 aacccggacg tggtgcgcac gctgcaacag gcggtacaaa gcggcgagta cagcgactat
    65461 caggaatacg cgaagctggt taatgagcgt ccggcaacca cgctgcgcga tctgctggca
    65521 attacgccgg gtgaaaacgc ggtcaacatt gctgatgttg aaccggcaag cgaactgttt
    65581 aaacgctttg ataccgccgc gatgtctatc ggcgcgttaa gcccggaagc ccacgaggcg
    65641 ctggcggaag cgatgaatag catcggcggt aactcgaact ccggtgaagg cggcgaagac
    65701 ccggcgcgct atggcactaa caaagtgtcg cgcatcaagc aggtggcttc tggtcgcttc
    65761 ggcgttactc cggcgtatct ggtcaatgcc gacgtcattc agattaaagt cgcccagggc
    65821 gcgaagccgg gcgaaggcgg tcagttgccg ggcgacaaag tcactcctta catcgccaaa
    65881 ctgcgctatt cggtgcccgg agtgacgctg atctccccgc cgccgcacca cgatatctac
    65941 tctatcgagg acttagcgca gctcattttc gacctcaagc aggttaaccc gaaagcgatg
    66001 atctccgtga agctggtttc cgaaccgggc gtaggcacca tcgcgactgg cgtggcaaaa
    66061 gcttatgccg atttaatcac catcgcaggc tatgacggtg gcaccggcgc aagcccgctg
    66121 tcgtcagtga aatacgcagg ttgcccgtgg gagctggggc ttgttgaaac ccagcaggcg
    66181 ctggttgcca atggtctgcg tcataagatc cgtttgcagg tcgatggcgg cctgaaaacc
    66241 ggtgttgata tcatcaaagc ggcgattctc ggcgcagaaa gcttcggctt cggcactggc
    66301 ccaatggtcg cgctcggctg taaatatctg cgtatttgcc acctgaacaa ctgcgcaacg
    66361 ggtgtggcaa ctcaggatga caaactgcgt aagaatcact atcacggcct gccgttcaag
    66421 gtgacgaatt actttgagtt tatcgcccgt gaaacccgcg agctgatggc acagctgggg
    66481 gtaacgcggc tggtggatct gattggtcgc accgacctgc tgaaagagct ggacggtttc
    66541 accgccaaac agcagaaact ggcgctgtcg aagctgctgg agaccgccga accgcatcca
    66601 ggtaaggcac tctactgcac cgaaaacaac ccgccgtttg ataacggcct gctgaacgcg
    66661 cagttgctgc aacaggcgaa accgtttgtc gatgaacgcc agagcaaaac cttctggttc
    66721 gatatccgca ataccgatcg ctccgtgggc gcgtcgcttt caggctatat cgcccagacg
    66781 cacggcgatc aggggctggc agccgatcct atcaaagcgt acttcaacgg caccgcaggc
    66841 cagagtttcg gtgtatggaa cgcgggcggc gtggaactgt acctgaccgg ggatgccaac
    66901 gactatgtcg gtaaaggcat ggcgggcggc ttaatcgcca ttcgtcctcc ggttggttcc
    66961 gccttccgca gccatgaagc aagtattatc ggcaacacct gcctgtatgg cgcgaccggt
    67021 ggtcgtctgt atgccgcagg ccgcgcgggt gaacgtttcg gcgtgcggaa ctccggtgct
    67081 atcaccgtgg tagaaggcat tggcgacaac ggctgtgaat atatgacggg cggtattgtc
    67141 tgtattctgg gtaaaaccgg cgttaacttc ggtgcgggca tgaccggcgg cttcgcttac
    67201 gttctcgatg aaagcggtga tttccgcaaa cgcgttaacc cggaactggt cgaggtctta
    67261 aacgttgacg atctggcgat ccatgaagag catctgcgcg gtcttatcac cgagcatgtt
    67321 cagcatactg gctctcagcg cggtgaagag attctggcga actggtcaac cttcgccact
    67381 aaatttgcgc tggttaaacc gaagtccagt gatgtaaaag cactgctggg tcaccgtagt
    67441 cgtagcgcag cagagttgcg cgtgcaggcg cagtaagggg tagcaacaat gagtcagaat
    67501 gtttatcaat ttatcgacct gcagcgcgtt gatccgccta agaaaccgct gaagatccgc
    67561 aaaattgagt ttgttgaaat ttacgagcag ttttccgaag gccaggccaa agcgcaggct
    67621 gaccgctgcc tgtcgtgcgg caacccatac tgcgagtgga aatgtccggt acacaactac
    67681 atcccgaact ggctgaagct cgccaacgag gggcgtattt ttgaagcggc ggaactgtcg
    67741 caccagacca acaccctgcc ggaagtttgc ggacgagtct gcccgcaaga ccgtctgtgc
    67801 gaaggttcct gcactctgaa cgatgagttt ggcgcggtga ccatcggcaa cattgagcgt
    67861 tatatcaatg ataaagcgtt cgaaatgggc tggcgtccgg atatgtccgg cgtgaagcaa
    67921 accggtaaaa aagtggcgat tatcggcgca ggcccggcag gtctggcgtg tgcggatgtc
    67981 ctgacgcgta acggcgtaaa agccgttgtc ttcgaccgtc atccagaaat tggcgggctg
    68041 ctgaccttcg gtattccggc cttcaagctg gaaaaagagg taatgacgcg tcgccgtgaa
    68101 atcttcaccg gcatgggtat tgaattcaaa ctcaataccg aagtgggccg cgacgtgcag
    68161 ctggacgatc tgctgagtga ttacgatgcc gtcttccttg gcgtcgggac ttatcagtca
    68221 atgcgcggcg gtctggaaaa caaagacgcc gatggcgtgt acgcagcgct gccgttcctt
    68281 atcgccaaca ccaaacagtt aatgggcttt ggtgaaaccc gcgacgaacc gttcgtcagc
    68341 atggaaggca aacgcgtggt ggtccttggc ggtggcgaca ctgcgatgga ctgcgtgcgt
    68401 acgtccgtgc gccagggagc gaagcacgtt acctgtgcct atcgtcgtga tgaagagaac
    68461 atgccgggtt cccgccgcga agtgaaaaac gcgcgggaag aaggcgtaga gttcaaattc
    68521 aacgtccagc cactggggat tgaagtgaac ggtaacggca aagtcagcgg cgtaaaaatg
    68581 gtacgtaccg aaatgggcga accggatgcc aaaggccgtc gccgcgcgga gatcgttgca
    68641 ggttccgaac atatcgttcc ggcagatgca gtgatcatgg cgtttggttt ccgtccacac
    68701 aacatggaat ggctggcaaa acacagcgtc gagctggatt cacaaggccg catcatcgcc
    68761 ccggaaggca gcgacaacgc cttccagacc agcaacccga aaatctttgc tggcggcgat
    68821 atcgtccgtg gttccgatct ggtggtaacc gctattgccg aaggtcgtaa ggcggcagac
    68881 ggtattatga actggctgga agtttaagct ctgtcccagc gccgcctcct cagaaaagag
    68941 tcggcgctga aattctcctt tctttctgga aagcgcctcg cataatctga agaaaaccaa
    69001 tgtaatacgc tcatctggat tgttaccggt agatgcccgg cgtatagctg attccattat
    69061 tcaacgcagc gccatataaa gggacagata atggaatcgc tctcagagag aacctcaaca
    69121 ggctaccagc aaatccacga cggtattatt cacctggtcg atagcgcccg gacggaaacg
    69181 gtacgtagcg ttaacgcgct gatgaccgcg acatactggg aaattggccg acgaattgtc
    69241 gaatttgaac aaggtggcga ggcaagggct gcgtatggtg cgcagctaat caagcgacta
    69301 tcaaaggatt taagtctaag gtataagcgt gggttctctg caaaaaactt acgccaaatg
    69361 aggctttttt acctcttttt tcaacatgtt gaaattcgcc agacagtgtc tggcgaatta
    69421 acaccattgg gaattccgca gacaccatct gcagaattcc catcggcaaa gatttggcag
    69481 acgctgtctg ccaaattgag aggctgtttg atatttccac agcttttgta ttgcatctcc
    69541 tattttcggt ttgtatattc atgcaaataa acgaaggaaa gttgccatga tttacattga
    69601 acagcttgaa ttaatccata aaag
//
LOCUS       DADMJB010000003        66639 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.003, whole genome shotgun sequence.
ACCESSION   DADMJB010000003 DADMJB010000000
VERSION     DADMJB010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 66639)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 66639)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..66639
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.003"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(129..608)
                     /gene="folK"
                     /locus_tag="JN078_000172"
     CDS             complement(129..608)
                     /gene="folK"
                     /locus_tag="JN078_000172"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HAY9039501.1"
                     /translation="MTVAYIAIGSNLASPLEQVNAALKALGDIPESHILAVSSFYRTP
                     PLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQDRVRKAERWGPRTLDLDIMLF
                     GNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELAFPDGETLREVLHTRAFDELSKW"
     gene            complement(605..2023)
                     /gene="pcnB"
                     /locus_tag="JN078_000173"
     CDS             complement(605..2023)
                     /gene="pcnB"
                     /locus_tag="JN078_000173"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000174652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HAY9039502.1"
                     /translation="MTLPRCTIFTRVANFCRKVLSREESEAEQAVARPQVTVIPREQH
                     AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKL
                     FRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGS
                     IEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLR
                     AVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEY
                     HLFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLL
                     ETAQKIAQESGLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQG
                     KRAWKLLEHPKFRAAYDLLALRAEVERNAELQRLVKWWGEFQVSAPPDQKGMLNELDE
                     EPSPRRRTRRPRKRAPRREGTA"
     gene            complement(2062..2988)
                     /gene="gluQRS"
                     /locus_tag="JN078_000174"
     CDS             complement(2062..2988)
                     /gene="gluQRS"
                     /locus_tag="JN078_000174"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414686.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HAY9039503.1"
                     /translation="MLPPYFLFKEMTDTQYIGRFAPSPSGELHFGSLIAALGSYLQAR
                     ARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWL
                     HEQGLSYYCTCTRARIQSIVGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGII
                     HADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLF
                     GWKVPDYIHLPLALNPQGAKLSKQNHAPALPKGDPRPVLIAALQFLGQQVEAHWQDFS
                     VEQILQSAVKNWTLTAVPESAIVNSTFSNASC"
     gene            complement(3025..3480)
                     /locus_tag="JN078_000175"
     CDS             complement(3025..3480)
                     /locus_tag="JN078_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding transcription factor
                     DksA"
                     /protein_id="HAY9039504.1"
                     /translation="MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRIL
                     EAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKT
                     LKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG"
     gene            complement(3658..4362)
                     /gene="sfsA"
                     /locus_tag="JN078_000176"
     CDS             complement(3658..4362)
                     /gene="sfsA"
                     /locus_tag="JN078_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA nuclease SfsA"
                     /protein_id="HAY9039505.1"
                     /translation="MEFSPLLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGC
                     ATRGDTVWYSTSDNTKRKYPHTWELTQSQSGAFICVNTLWANRLTKEAILNESISELS
                     GYSSLKSEVKYGAERSRIDFMLQADSRPDCYIEVKSVTLAENEQGYFPDAVTERGQKH
                     LRELMNVAAEGQRAVIFFAVLHSAITRFSPARHIDEKYAQLLSEAQQRGVEILAYKAE
                     ISAEGMALKKSLPVTL"
     gene            complement(4377..4907)
                     /gene="thpR"
                     /locus_tag="JN078_000177"
     CDS             complement(4377..4907)
                     /gene="thpR"
                     /locus_tag="JN078_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414689.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HAY9039506.1"
                     /translation="MSEPQRLFFAIDLPAEIREQIIHWRATHFPPEAGRPVAADNLHL
                     TLAFLGEVSAEKEKALSLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQL
                     ANMLRSQAARSGCFQSNRPFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSFA
                     RGRTRYTPLKRWALMQ"
     gene            4981..7410
                     /gene="hrpB"
                     /locus_tag="JN078_000178"
     CDS             4981..7410
                     /gene="hrpB"
                     /locus_tag="JN078_000178"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase HrpB"
                     /protein_id="HAY9039507.1"
                     /translation="MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH
                     PGINGKIILLEPRRLAARNVAQRLEELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEG
                     VLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD
                     NDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLF
                     LPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAE
                     TSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGICLH
                     LIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPTVNLLAAKRL
                     LQMLGALEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG
                     NSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDG
                     RYQLANGMGAMLDADDALSRHEWLIAPLLLQGSASPDARILLALPVDIDELVQRCPQL
                     VQQSDTVEWDDAQGTLKAWRRLQIGLLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVL
                     NWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLATLETWLLPHMTGVHSLRGLKSLD
                     IYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATN
                     PTIAQGRVPLVLELLSPAQSPLQITRDLSAFWKGAYREVQKEMKGRYPKHVWPDDPAN
                     TAPTRRTKKYS"
     gene            7606..10128
                     /gene="mrcB"
                     /locus_tag="JN078_000179"
     CDS             7606..10128
                     /gene="mrcB"
                     /locus_tag="JN078_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glycosyl
                     transferase/transpeptidase"
                     /protein_id="HAY9039508.1"
                     /translation="MAGNDREPIGRKGKPTRPVKQKVSRRRYEDDDDYDDYDDYEDEE
                     PMPRKGKGKGKGRKPRGKRGWLWLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQL
                     PAAVYGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFD
                     FPDSKEGQVRAHLTFDGDHLATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPR
                     SGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNL
                     FLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYY
                     FGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYD
                     MLSARPLGVQPRGGVISPQPAFMQLVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAA
                     EKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSI
                     GSLAKPATYLTALSQPKIYRLNTWIADAPIALRQPNGLVWSPQNDDRRYSESGRVMLV
                     DALTRSMNVPTVNLGMALGLPAVTDTWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQA
                     FQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGT
                     GRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTITWAGRDNNQPTKLYGASGAM
                     SIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGMRVLPVWTSDPQSLCQQSE
                     MQQQPSGNPFDQSSQPQQQPAQQEQKDSDGVAGWIKDMFGSN"
     gene            10348..12537
                     /gene="fhuA"
                     /locus_tag="JN078_000180"
     CDS             10348..12537
                     /gene="fhuA"
                     /locus_tag="JN078_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrichrome porin FhuA"
                     /protein_id="HAY9039509.1"
                     /translation="MARSKTAQPKHSLRKIAVVVATAVSGMSVYAQAAVEPKEDTITV
                     TAAPAPQESAWGPAATIAAKHSATATKTDTPIEKTPQSISVVTNEEMQMHQFQSVKEA
                     LGYTPGVTVSSRGASNTYDFVIIRGFSSVGLNQNNYLDGLKLQGNFYNDAVIDPYMLE
                     RVELMRGPTSVLYGKSNPGGIISMVSKRPTTEPLKEIQFKMGTDNLFQTGFDFSDALD
                     DNGEFSYRLTGLARSTNEQQKNSESQRYTIAPSFSWRPDDKTNFTFLSYFQNEPETGY
                     YGWLPKEGTVEPLPNGKRLPTDFNEGASNNTYSRNQKMVGYSFEHGFNDTFTVRQNLR
                     FSEMKTSQKSVYGTGIAGDGHTLNRGTVVDNERLQNFSVDTQLESKFATGDVEHTLLT
                     GVDFMRMRNDINASFGSAPSIDLYNKYHPEYFAFGSAEPYQMNESKQTGIYVQDQAEW
                     NKWVFTLGGRYDWSKQATTVRENSYTPTEGYIERNDHQFTWRGGVNYLFDNGISPYFS
                     YSQSFEPSAFDLWSNPRISYKPSKGEQYEAGVKYVPNDMPVVVTGAVYQLTKTNNLTA
                     DPTNPLAQVPAGEIRARGVELEAKAALNANINLTASYTYTDAEYTKDTNLKGKTPEQV
                     PEHMASLWGDYTFNEGPLSGLTLGTGGRFIGSSYGDPANTFKVGSAAVMDAVVKYDLA
                     RFGMAGSSLAVNVNNLLDREYVASCFQTYGCFWGAERQVVATATFRF"
     gene            12588..13385
                     /gene="fhuC"
                     /locus_tag="JN078_000181"
     CDS             12588..13385
                     /gene="fhuC"
                     /locus_tag="JN078_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe3+-hydroxamate ABC transporter ATP-binding
                     protein FhuC"
                     /protein_id="HAY9039510.1"
                     /translation="MQEYTNHSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIG
                     HNGSSKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTV
                     RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM
                     LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYL
                     VALRGGEMIAQGTPAEIMRGDTLEMIYGIPMGILPHPAGAAPVSFVY"
     gene            13385..14275
                     /gene="fhuD"
                     /locus_tag="JN078_000182"
     CDS             13385..14275
                     /gene="fhuD"
                     /locus_tag="JN078_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-hydroxamate ABC transporter
                     substrate-binding protein FhuD"
                     /protein_id="HAY9039511.1"
                     /translation="MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWL
                     PVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVW
                     SAGYGPSAEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYED
                     FIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWG
                     STAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYG
                     ATLSAMHFVRVLDNAIGGKA"
     gene            14272..16254
                     /gene="fhuB"
                     /locus_tag="JN078_000183"
     CDS             14272..16254
                     /gene="fhuB"
                     /locus_tag="JN078_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-hydroxamate ABC transporter permease
                     FhuB"
                     /protein_id="HAY9039512.1"
                     /translation="MSKRIALFPALLLALLVIVATALTWMNFSQALPRSQWAQAAWSP
                     DIDVIEQMIFHYSLLPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLG
                     ITVTTLWAIPGAMASQFAALAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGAI
                     NQLLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLD
                     DGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPR
                     LMLASLIGALILWLSDQIILWLTRVWMEVSTGSVTALIGAPLLLWLLPRLRSISAPDM
                     KVNDRVAAERQHVLAFALAGGVLLLMAVVVALSFGRDAHGWMWASGALLDDLMPWRWP
                     RIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWL
                     LPAGSIGAAVTLLIIMIAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQV
                     LTWISGSTYNATDAQVWRTGIVMVILLAITPLYRRWLTILPLGGDTARAVGMALTPTR
                     IALLLLAACLTATSTMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFA
                     DWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR"
     gene            complement(16289..17569)
                     /gene="hemL"
                     /locus_tag="JN078_000184"
     CDS             complement(16289..17569)
                     /gene="hemL"
                     /locus_tag="JN078_000184"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HAY9039513.1"
                     /translation="MSKSENLYSAARELLPGGVNSPVRAFTGVGGTPLFIEKADGAYL
                     YDVDGKAYIDYVGSWGPMVLGHNHPAIRNAAIEAAERGLSFGAPTEMEVKMAQLVTEL
                     VPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTL
                     GQPNSPGVPADFAKHTLTCTYNDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPQPE
                     FLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAF
                     GGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLDELTTRLAEG
                     LLEAAEEAGTPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVY
                     LAPSAFEAGFMSVAHSMEDINNTIDAARRVFAKL"
     gene            17794..19215
                     /gene="clcA"
                     /locus_tag="JN078_000185"
     CDS             17794..19215
                     /gene="clcA"
                     /locus_tag="JN078_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="H(+)/Cl(-) exchange transporter ClcA"
                     /protein_id="HAY9039514.1"
                     /translation="MKTDTPSLETPQAARLRRRQLIRQLLERDKTPLAILFMAAVVGT
                     LVGLAAVAFDKGVAWLQNQRMEALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAP
                     EAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGR
                     MVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAV
                     FIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGM
                     QDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLV
                     FIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVVVELFPQYHLEAGTFAIA
                     GMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSEILA
                     RTLAKQEAEQLARSKAASASENT"
     gene            19239..19304
                     /locus_tag="JN078_000186"
     CDS             19239..19304
                     /locus_tag="JN078_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9039515.1"
                     /translation="MAIIIGLEFAQLPMSFGAKYE"
     gene            19297..19641
                     /gene="erpA"
                     /locus_tag="JN078_000187"
     CDS             19297..19641
                     /gene="erpA"
                     /locus_tag="JN078_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HAY9039516.1"
                     /translation="MSDDVALPLEFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSG
                     FQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNA
                     KSTCGCGSSFSI"
     gene            complement(19688..20311)
                     /locus_tag="JN078_000188"
     CDS             complement(19688..20311)
                     /locus_tag="JN078_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRIC cation channel family protein"
                     /protein_id="HAY9039517.1"
                     /translation="MLVYWLDIVGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGG
                     TIRDMALDHGPVFWVKDPTDLVVAMVTSMLTIVLVRQPRRLPKWMLPVLDAVGLAVFV
                     GIGVNKAFNAEAGPLIAVCMGVITGVGGGIIRDVLAREIPMILRTEIYATACIIGGIV
                     HATAYYTFSVPLETASMMGMVVTLLIRLAAIRWHLKLPTFALDENGR"
     gene            complement(20354..21148)
                     /gene="btuF"
                     /locus_tag="JN078_000189"
     CDS             complement(20354..21148)
                     /gene="btuF"
                     /locus_tag="JN078_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005024031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter substrate-binding
                     protein BtuF"
                     /protein_id="HAY9039518.1"
                     /translation="MAKSLFRALVALSFLAPLWLNAAPRVITLSPANTELAFAAGITP
                     VGVSSYSDYPPQAQKIEQVSTWQGMNLERIVALKPDLVIAWRGGNAERQVDQLASPGI
                     KVMWVDATSIEQIANALRQLAPWSPQPDKAEQAAQSLLDQYAQLKAQYADKPKKRVFL
                     QFGINPPFTSGKESIQNQVLEVCGGENIFKDSRVPWPQVSREQVLARSPQAIVITGGP
                     DQIPKIKQYWGEQLKIPVIPLTSDWFDVQAHVLSSLHNSSVMRFHR"
     gene            complement(21141..21839)
                     /gene="mtnN"
                     /locus_tag="JN078_000190"
     CDS             complement(21141..21839)
                     /gene="mtnN"
                     /locus_tag="JN078_000190"
                     /EC_number="3.2.2.16"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/S-adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HAY9039519.1"
                     /translation="MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVA
                     LLKSGIGKVAAALGATLLLEHGKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADV
                     TAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAK
                     IRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQS
                     SLMVESLVQKLAHG"
     gene            21923..23440
                     /gene="dgt"
                     /locus_tag="JN078_000191"
     CDS             21923..23440
                     /gene="dgt"
                     /locus_tag="JN078_000191"
                     /EC_number="3.1.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dGTPase"
                     /protein_id="HAY9039520.1"
                     /translation="MAQIDFRKKINWHRRYRSPQGVKTEHEILRIFESDRGRIINSPA
                     IRRLQQKTQVFPLERNAAVRTRLTHSMEVQQVGRYIAKEILSRMKELKLLEAYGLDEL
                     TGPFESIVEMSCLMHDIGNPPFGHFGEAAINDWFRQRLHPEDAESQPLTDDRCSVAAL
                     RLRDGEEPLNELRRKIRQDLCHFEGNAQGIRLVHTLMRMNLTWAQVGGILKYTRPAWW
                     RGETPETHHYLMKKPGYYLSEEAYIARLRKELNLALYSRFPLTWIMEAADDISYCVAD
                     LEDAVEKRIFTVEQLYHHLHEAWGQHEKGSLFSLVVENAWEKSRSNSLSRSTEDQFFM
                     YLRVNTLNKLVPYAAQRFIDNLPAIFAGTFNHALLEDASECSDLLKLYKNVAVKHVFS
                     HPDVEQLELQGYRVISGLLEIYRPLLSLSLSDFTELVEKERVKRFPIESRLFHKLSTR
                     HRLAYVEAVSKLPSDSPEFPLWEYYYRCRLLQDYISGMTDLYAWDEYRRLMAVEQ"
     gene            23570..24994
                     /gene="degP"
                     /locus_tag="JN078_000192"
     CDS             23570..24994
                     /gene="degP"
                     /locus_tag="JN078_000192"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine endoprotease DegP"
                     /protein_id="HAY9039521.1"
                     /translation="MKKTTLALSALALSLGLALSPLSATAAETSSATTAQQMPSLAPM
                     LEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGN
                     GGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRS
                     DIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNA
                     ENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNL
                     TSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGD
                     VITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSS
                     IFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKV
                     LDSKPSVLALNIQRGDSTIYLLMQ"
     gene            25149..26306
                     /locus_tag="JN078_000193"
     CDS             25149..26306
                     /locus_tag="JN078_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CdaR family transcriptional regulator"
                     /protein_id="HAY9039522.1"
                     /translation="MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERI
                     GELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLR
                     KYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDL
                     NQPRVVAIVEVDSGQLGVDSAMAELQQLQNALTTPERNNLVAIVSLTEMVVLKPALNS
                     FGRWDAEDHRKRVEQLITRMKEYGRLRFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQ
                     RMPESRCYFYQDLMLPVLLDSLRGDWQANELARPLARLKAMDNNGLLRRTLAAWFRHN
                     VQPLATSKALFIYRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEER"
     gene            complement(26395..26781)
                     /locus_tag="JN078_000194"
     CDS             complement(26395..26781)
                     /locus_tag="JN078_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000272186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3461 family protein"
                     /protein_id="HAY9039523.1"
                     /translation="MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDKGEFFAK
                     SVKFKYPRQRKTVVADGVGQGYKEVQEISPNLRYIIDELDQICQRDRSEVDLKRKILD
                     DLRHLESVVTNKISEIEADLEKLTRK"
     gene            complement(26943..27755)
                     /gene="yaeI"
                     /locus_tag="JN078_000195"
     CDS             complement(26943..27755)
                     /gene="yaeI"
                     /locus_tag="JN078_000195"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414706.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase YaeI"
                     /protein_id="HAY9039524.1"
                     /translation="MISRRRLLQATAATIATSSGFGYMHYWEPGWFELIRHRLAFFKD
                     NAAPFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFS
                     DVLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSVGITVLFNQATVIATPNRQFE
                     LVGTGDLWAGQCKPPPASEANLPRLMLAHNPDSKEVMRDEPWDLMLCGHTHGGQLRVP
                     LVGEPFAPVEDKRYVAGLNAFGERHIYTTRGVGSLYGLRLNCRPEVTMLELV"
     gene            complement(27810..28634)
                     /gene="dapD"
                     /locus_tag="JN078_000196"
     CDS             complement(27810..28634)
                     /gene="dapD"
                     /locus_tag="JN078_000196"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HAY9039525.1"
                     /translation="MQQLQNIIETAFERRAEITPTNADTVTREAVNQVIALLDSGALR
                     VAEKIDGQWVTHQWLKKAVLLSFRINDNQVIEGAESRYFDKVPMKFADYDEARFQKEG
                     FRVVPPAAVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSG
                     GVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRE
                     TGEIHYGHVPAGSVVVSGNLPSKDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID"
     gene            complement(28665..31337)
                     /gene="glnD"
                     /locus_tag="JN078_000197"
     CDS             complement(28665..31337)
                     /gene="glnD"
                     /locus_tag="JN078_000197"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     uridylyltransferase/uridylyl-removing protein GlnD"
                     /protein_id="HAY9039526.1"
                     /translation="MNTLPEQYANTALPTLPGQPQNPCVWPRDELTVGGIKAHIDTFQ
                     RWLGDAFDNGISAEQLIEARTEFIDQLLQRLWIEAGFSQIADLALVAVGGYGRGELHP
                     LSDIDLLILSRKKLPDDQAQKVGELLTLLWDVKLEVGHSVRTLEECMLEGLSDLTVAT
                     NLIESRLLIGDVALFLELQKHIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPD
                     IKSSPGGLRDIHTLQWVARRHFGATSLDEMVGFGFLTSAERAELNECLHILWRIRFAL
                     HLVVSRYDNRLLFDRQLSVAQRLNYSGEGNEPVERMMKDYFRVTRRVSELNQMLLQLF
                     DEAILALPADEKPRPIDDEFQLRGTLIDLRDETLFMRQPEAILRMFYTMVRNSAITGI
                     YSTTLRQLRHARRHLQQPLCNIPEARKLFLSILRHPGAVRRGLLPMHRHSVLGAYMPQ
                     WSHIVGQMQFDLFHAYTVDEHTIRVMLKLESFASEETRQRHPLCVDVWPRLPSTELIF
                     IAALFHDIAKGRGGDHSILGAQDVVHFAELHGLNSRETQLVAWLVRQHLLMSVTAQRR
                     DIQDPEVIKQFAEEVQTENRLRYLVCLTVADICATNETLWNSWKQSLLRELYFATEKQ
                     LRRGMQNTPDMRERVRHHQLQALALLRMDNIDEEALHQIWSRCRANYFVRHSPNQLAW
                     HARHLLQHDLSKPLVLLSPQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQI
                     FTTRDGMAMDTFIVLEPDGSPLSADRHEVIRFGLEQVLTQSSWQPPQPRRQPAKLRHF
                     TVETEVTFLPTHTDRKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVED
                     LFIIATADRRALNNELQQEVHQRLTEALNPNDKG"
     gene            complement(31399..32193)
                     /gene="map"
                     /locus_tag="JN078_000198"
     CDS             complement(31399..32193)
                     /gene="map"
                     /locus_tag="JN078_000198"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HAY9039527.1"
                     /translation="MAISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRI
                     CNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIK
                     DGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAE
                     GFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMK
                     DGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIISHDE"
     gene            32561..33286
                     /gene="rpsB"
                     /locus_tag="JN078_000199"
     CDS             32561..33286
                     /gene="rpsB"
                     /locus_tag="JN078_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HAY9039528.1"
                     /translation="MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLE
                     KTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLT
                     NWKTVRQSIKRLKDLETQSQDGTFEKLTKKEALMRTRELEKLENSLGGIKDMGGLPDA
                     LFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVA
                     ATVREGRSQDLASQAEESFVEAE"
     gene            33544..34395
                     /gene="tsf"
                     /locus_tag="JN078_000200"
     CDS             33544..34395
                     /gene="tsf"
                     /locus_tag="JN078_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HAY9039529.1"
                     /translation="MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKS
                     GAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVA
                     GKITDVEVLKAQFEEERVALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKG
                     ADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEG
                     RMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEV
                     AAMSKQS"
     gene            34542..35267
                     /gene="pyrH"
                     /locus_tag="JN078_000201"
     CDS             34542..35267
                     /gene="pyrH"
                     /locus_tag="JN078_000201"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000224576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HAY9039530.1"
                     /translation="MATNAKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKEL
                     VELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNA
                     RLMSAIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADV
                     VLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVF
                     NMNKPGALRRVVMGEKEGTLITE"
     gene            35559..36116
                     /gene="frr"
                     /locus_tag="JN078_000202"
     CDS             35559..36116
                     /gene="frr"
                     /locus_tag="JN078_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000622421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HAY9039531.1"
                     /translation="MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEY
                     YGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPL
                     PPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDV
                     QKLTDAAIKKIEAALADKEAELMQF"
     gene            36208..37404
                     /gene="ispC"
                     /locus_tag="JN078_000203"
     CDS             36208..37404
                     /gene="ispC"
                     /locus_tag="JN078_000203"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HAY9039532.1"
                     /translation="MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVE
                     QCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIV
                     GAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSL
                     PQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKI
                     SVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDM
                     RTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTA
                     LNAANEITVAAFLAQQIRFTDIAALNLSVLEKMDMREPQCVDDVLSVDANAREVARKE
                     VMRLAS"
     gene            37592..38368
                     /gene="ispU"
                     /locus_tag="JN078_000204"
                     /gene_synonym="uppS"
     CDS             37592..38368
                     /gene="ispU"
                     /locus_tag="JN078_000204"
                     /gene_synonym="uppS"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl-diphosphate-specific
                     ditrans,polycis-undecaprenyl-diphosphate synthase"
                     /protein_id="HAY9039533.1"
                     /translation="MLSATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKA
                     GAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRH
                     NVRLRIIGDTSRFNSRLQECIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEK
                     VQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFIDV
                     LWPDFDEQDFEGALNAFANRERRFGGTGPVMKQPDGGRFC"
     gene            38362..39219
                     /gene="cdsA"
                     /locus_tag="JN078_000205"
     CDS             38362..39219
                     /gene="cdsA"
                     /locus_tag="JN078_000205"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414717.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HAY9039534.1"
                     /translation="MLKYRLISAFVLIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWG
                     QLSGFTTRSQRVWLAVLCGLLLALMLFLLPEYHRNIHQPLVEISLWASLGWWIVSLLL
                     VLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDENHYSGAIWLLYVMIL
                     VWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLDVAPV
                     TLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFAC
                     LLLLVFRTL"
     gene            39231..40583
                     /gene="rseP"
                     /locus_tag="JN078_000206"
     CDS             39231..40583
                     /gene="rseP"
                     /locus_tag="JN078_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma E protease regulator RseP"
                     /protein_id="HAY9039535.1"
                     /translation="MLSFLWDLASFIVALGVLITVHEFGHFWVARRCGVRVERFSIGF
                     GKALWRRTDKLGTEYVIALIPLGGYVKMLDERAEPVVPELRHHAFNNKSVGQRAAIIA
                     AGPVANFIFAIFAYWLVFIIGVPGVRPVVGEIAANSIAAEAQIAPGTELKAVDGIETP
                     DWDAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLRHWAFEPDKEDPVSSLGIRPR
                     GLQIEPVLENVQPNSAASKAGLQAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEI
                     ERQGSLLSLTLIPESKPGNGKAIGFVGIEPKVIPLPDEYKVVRQYGPFNAIVEATDKT
                     WQLMKLTVSMLGKLITGDVKLNNLSGPISIAKGAGMTAELGVVYYLPFLALISVNLGI
                     INLFPLPVLDGAHLLFLAIEKIKGGPVSERVQDFCYRIGSILLVLLMGLALFNDFSRL
                     "
     gene            40613..43045
                     /gene="bamA"
                     /locus_tag="JN078_000207"
     CDS             40613..43045
                     /gene="bamA"
                     /locus_tag="JN078_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HAY9039536.1"
                     /translation="MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALL
                     SMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGN
                     KSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPR
                     NRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQK
                     LAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGN
                     LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKT
                     VKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRL
                     GFFETVDTDTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWL
                     GTGYAVGINGTKNDYQTYAELSVTNPYFTVDGVSLGGRLFYNDFQADDADLSDYTNKS
                     YGTDVTLGFPINEYNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGEHPSTSDQDNSFK
                     TDDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVTLDTATYVPIDDD
                     HKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYFPHQASNY
                     DPDYDYECATQDGAKDLCKSDDAVGGNAMAVASLEFITPTPFISDKYANSVRTSFFWD
                     MGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDK
                     AEQFQFNIGKTW"
     gene            43167..43652
                     /gene="skp"
                     /locus_tag="JN078_000208"
                     /gene_synonym="hlpA"
                     /gene_synonym="ompH"
     CDS             43167..43652
                     /gene="skp"
                     /locus_tag="JN078_000208"
                     /gene_synonym="hlpA"
                     /gene_synonym="ompH"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone Skp"
                     /protein_id="HAY9039537.1"
                     /translation="MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQQVAQKTGVSN
                     TLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFE
                     QDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQV
                     K"
     gene            43656..44681
                     /gene="lpxD"
                     /locus_tag="JN078_000209"
     CDS             43656..44681
                     /gene="lpxD"
                     /locus_tag="JN078_000209"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HAY9039538.1"
                     /translation="MPSIRLADLAQQLDAELHGDGDIVITGVASMQSAQTGHITFMVN
                     PKYREHLGLCQASAVVMTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAP
                     SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTI
                     YHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRG
                     ALDDTVIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGH
                     MEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDDMSKRLKSLE
                     RKVNQQD"
     gene            44786..45241
                     /gene="fabZ"
                     /locus_tag="JN078_000210"
     CDS             44786..45241
                     /gene="fabZ"
                     /locus_tag="JN078_000210"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000210741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HAY9039539.1"
                     /translation="MTTNTHTLQIEEILELLPHRFPFLLVDRVLDFEEGRFLRAVKNV
                     SVNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFK
                     RPVVPGDQMIMEVTFEKTRRGLTRFKGVALVDGKVVCEATMMCARSREA"
     gene            45245..46033
                     /gene="lpxA"
                     /locus_tag="JN078_000211"
     CDS             45245..46033
                     /gene="lpxA"
                     /locus_tag="JN078_000211"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HAY9039540.1"
                     /translation="MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVGIGEGTVL
                     KSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGT
                     VQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVH
                     QFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNA
                     YKLIYRSGKTLDEVKPEIAELAETYPEVKAFTDFFSRSTRGLIR"
     gene            46033..47181
                     /gene="lpxB"
                     /locus_tag="JN078_000212"
     CDS             46033..47181
                     /gene="lpxB"
                     /locus_tag="JN078_000212"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HAY9039541.1"
                     /translation="MTEQRPLTIALVAGETSGDILGAGLIRALKERVPNARFVGVAGP
                     RMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTKRFGELKPDVFVGIDAPDF
                     NITLEGNLKKQGIKTIHYVSPSVWAWRQKRVFKIGRATDLVLAFLPFEKAFYDKYNVP
                     CRFIGHTMADAMPLDPDKNAARDVLGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQL
                     LRQTYPDLEIVVPLVNAKRREQFERIKAEVAPDFSVHLLDGMGREAMVASDAALLASG
                     TAALECMLVKCPMVVGYRMKPFTFWLAKRLVKTDYVSLPNLLAGRELVKELLQEECEP
                     QKLAAALLPLLANGKISHAMHDTFRELHQQIRCNADEQAAQAVLELAQ"
     gene            47178..47774
                     /gene="rnhB"
                     /locus_tag="JN078_000213"
     CDS             47178..47774
                     /gene="rnhB"
                     /locus_tag="JN078_000213"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HAY9039542.1"
                     /translation="MIEFVYPHTQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLN
                     DSKKLSEKRRLALCEEIKEKALSWSLGRAEPHEIDELNILHATMLAMQRAVAGLHIAP
                     EYVLIDGNRCPKLPMPAMVVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFA
                     QHKGYPTAFHLEKLAEHGATEHHRRSFGPVKRALGLAS"
     gene            47811..51293
                     /gene="dnaE"
                     /locus_tag="JN078_000214"
     CDS             47811..51293
                     /gene="dnaE"
                     /locus_tag="JN078_000214"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HAY9039543.1"
                     /translation="MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDF
                     TNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLIS
                     KAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEE
                     HFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVA
                     IHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEY
                     FLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQ
                     MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFL
                     NPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG
                     HPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNA
                     GKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIN
                     WALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ
                     PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYG
                     IILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGVNAEL
                     AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVV
                     GLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKG
                     GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK
                     AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKE
                     IERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVML
                     FTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYASGLAISL
                     TDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDL
                     RGLIGSEQVELEFD"
     gene            51306..52265
                     /gene="accA"
                     /locus_tag="JN078_000215"
     CDS             51306..52265
                     /gene="accA"
                     /locus_tag="JN078_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HAY9039544.1"
                     /translation="MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLR
                     EKSVELTRKIFADLGAWQIAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIV
                     GGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITF
                     IDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVN
                     MLQYSSYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSIIPEPLGGAH
                     RNPEAMAASLKAQLLADLADLDVLSTEDLKNRRYQRLMSYGYA"
     gene            52364..54473
                     /gene="ldcC"
                     /locus_tag="JN078_000216"
                     /pseudo
     CDS             52364..54473
                     /gene="ldcC"
                     /locus_tag="JN078_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414728.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lysine decarboxylase LdcC"
     gene            54530..54919
                     /locus_tag="JN078_000217"
     CDS             54530..54919
                     /locus_tag="JN078_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308216.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HAY9039545.1"
                     /translation="MLGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSW
                     KGDLALNGQYVIELFSFPFPPERPSRPEACGLRHLAFSVDDIDAAVAHLESHNVKCEA
                     IRVDPYTQKRFTFFNDPDGLPLELYEQ"
     gene            54984..56282
                     /gene="tilS"
                     /locus_tag="JN078_000218"
     CDS             54984..56282
                     /gene="tilS"
                     /locus_tag="JN078_000218"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HAY9039546.1"
                     /translation="MTLTLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVTL
                     RAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFA
                     RTLLPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTR
                     GELAQWALAHGLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAE
                     QESLLDELLADDLAHCQTSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSREALV
                     RIWQEVALAREDASPCLRLGAFEIRRYQSQLWWIKSVTGQSETIVPWQTWLQPLELPA
                     GLGSVQLTAGGDIRPPRADEAVSVRFKSAGLLHIVGRNGGRKLKKIWQELGVPPWLRD
                     TTPLLFYGETLIAAAGVFVTQEGVAEGENGVSFVWQKTLS"
     gene            complement(56331..56591)
                     /gene="rof"
                     /locus_tag="JN078_000219"
     CDS             complement(56331..56591)
                     /gene="rof"
                     /locus_tag="JN078_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rho-binding antiterminator"
                     /protein_id="HAY9039547.1"
                     /translation="MLMNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASD
                     LVSRKNVEYLVVEAAGETRELRLDKITSFSHPEIGTVVVSES"
     gene            complement(56578..56778)
                     /locus_tag="JN078_000220"
     CDS             complement(56578..56778)
                     /locus_tag="JN078_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaeP family protein"
                     /protein_id="HAY9039548.1"
                     /translation="MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALS
                     EAVREKAAYAAANLLVSDYINE"
     gene            56944..57489
                     /locus_tag="JN078_000221"
     CDS             56944..57489
                     /locus_tag="JN078_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaeQ family protein"
                     /protein_id="HAY9039549.1"
                     /translation="MALKATIYKATVNVADLDRNQFLDASLTLARHPSETQERMMLRL
                     LAWLKYADERLQFTRGLCADDEPEAWLRNDHLGIDLWIELGLPDERRIKKACTQAAEV
                     ALFTYNSRAAQIWWQQNQSKCVQFANLSVWYLDDEQLAKVSAFADRTMTLQATIQDGV
                     IWLSDDKNNLEVNLTAWQQPS"
     gene            57486..57908
                     /gene="arfB"
                     /locus_tag="JN078_000222"
     CDS             57486..57908
                     /gene="arfB"
                     /locus_tag="JN078_000222"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HAY9039550.1"
                     /translation="MIVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIR
                     ASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAVIKDLTTEQ
                     KARRPTRPTRASKERRLASKAQKSSAKAMRGKVRSGRE"
     gene            57922..58632
                     /gene="nlpE"
                     /locus_tag="JN078_000223"
                     /gene_synonym="cutF"
     CDS             57922..58632
                     /gene="nlpE"
                     /locus_tag="JN078_000223"
                     /gene_synonym="cutF"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308221.1"
                     /note="NlpE, an outer membrane lipoprotein, interacts
                     directly with CpxA, the sensor histidine kinase of the Cpx
                     system for response to envelope stress; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response activation lipoprotein
                     NlpE"
                     /protein_id="HAY9039551.1"
                     /translation="MVKKAIVTAMAVISLFTLMGCNNRAEVDTLSPAQAAELKPMPQS
                     WRGVLPCADCEGIETSLFLEKDGTWVMNERYLGAREEPSSFASYGTWARTADKLVLTD
                     SKGEKSYYRAKGDALEMLDREGNPIESQFNYTLEPAQSSLPMTPMTLRGMYFYMADAA
                     TFTDCATGKRFMVANNAELERGYLAARGHSEKPVLLSVEGHFTLEANPDTGAPTKVLA
                     PDTAGKFYPNKDCSSLGQ"
     gene            complement(58832..59652)
                     /locus_tag="JN078_000224"
                     /pseudo
     CDS             complement(58832..59652)
                     /locus_tag="JN078_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414735.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YaeF family permuted papain-like enzyme"
     gene            complement(59705..61423)
                     /gene="proS"
                     /locus_tag="JN078_000225"
     CDS             complement(59705..61423)
                     /gene="proS"
                     /locus_tag="JN078_000225"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HAY9039552.1"
                     /translation="MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLP
                     TGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGER
                     PFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDA
                     YSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGE
                     DDVVFSDTSDYAANIELAEAIAPKEPRAAATQEMTLVDTPNAKTIAELVEQFNLPIEK
                     TVKTLLVKAVEGSSFPLVALLVRGDHELNEVKAEKLPQVASPLTFATEEEIRAVVKAG
                     PGSLGPVNMPIPVVIDRTVAAMSDFAAGANIDGKHYFGINWDRDVATPEVADIRNVVA
                     GDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCYGIGVTR
                     VVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQGIEVL
                     LDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVEYL
                     VKQIKG"
     gene            complement(61533..62240)
                     /gene="tsaA"
                     /locus_tag="JN078_000226"
     CDS             complement(61533..62240)
                     /gene="tsaA"
                     /locus_tag="JN078_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HAY9039553.1"
                     /translation="MSSFQFEQIGVIRSPYKEKFAVPRQPGLVKSANGELHLIAPYNQ
                     ADAVRGLEAFSHLWILFVFHQTMEGGWRPTVRPPRLGGNARMGVFATRSTFRPNPIGM
                     SLVELKEVVCHKDSVILKLGSLDLVDGTPVVDIKPYLPFAESLPDASASYAQSAPAAE
                     MAVSFTAEVEKQLLTLEKRYPQLTLFIREVLAQDPRPAYHKGEETGKTYAVWLHDFNV
                     RWRVTDAGFEVFALEPR"
     gene            complement(62237..62641)
                     /gene="rcsF"
                     /locus_tag="JN078_000227"
     CDS             complement(62237..62641)
                     /gene="rcsF"
                     /locus_tag="JN078_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rcs stress response system protein RcsF"
                     /protein_id="HAY9039554.1"
                     /translation="MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAP
                     RATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKAN
                     AVLLHSCEVTSGTPGCYRQAVCIGSALNITAK"
     gene            complement(62759..63574)
                     /gene="metQ"
                     /locus_tag="JN078_000228"
     CDS             complement(62759..63574)
                     /gene="metQ"
                     /locus_tag="JN078_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter substrate-binding
                     lipoprotein MetQ"
                     /protein_id="HAY9039555.1"
                     /translation="MAFKFKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQ
                     VAEVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYK
                     LVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDG
                     VGLLPTVLDVVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGI
                     FVEDKDSPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKVFNGGAVKGW"
     gene            complement(63614..64267)
                     /gene="metI"
                     /locus_tag="JN078_000229"
     CDS             complement(63614..64267)
                     /gene="metI"
                     /locus_tag="JN078_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter permease MetI"
                     /protein_id="HAY9039556.1"
                     /translation="MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPG
                     QIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAP
                     FIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY
                     SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK"
     gene            complement(64260..65291)
                     /gene="metN"
                     /locus_tag="JN078_000230"
     CDS             complement(64260..65291)
                     /gene="metN"
                     /locus_tag="JN078_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014168731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein
                     MetN"
                     /protein_id="HAY9039557.1"
                     /translation="MIKLSNITKVFHQGTRIIQALNNVSLHVPAGQIYGVIGASGAGK
                     STLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGN
                     VALPLELDNTPKDEIKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK
                     VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE
                     LIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQERLQAEPFTDCVPMLRLEFTGQ
                     SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHH
                     VKVEVLGYV"
     gene            65479..66051
                     /gene="gmhB"
                     /locus_tag="JN078_000231"
     CDS             65479..66051
                     /gene="gmhB"
                     /locus_tag="JN078_000231"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HAY9039558.1"
                     /translation="MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKK
                     MGFVLVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEE
                     FRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAAAANVGTKVLVRTGKP
                     ITPEAENAADWVLNSLADLPQAIKKQQKPA"
     gene            66415..>66639
                     /locus_tag="JN078_000232"
     rRNA            66415..>66639
                     /locus_tag="JN078_000232"
                     /product="16S ribosomal RNA"
BASE COUNT        15847 a        16490 c        18284 g        16018 t
ORIGIN      
        1 atgggattga tatttatctg cgggaattta tattatgttt ctgcaaaaat gtttaaacta
       61 aaatttttat taaggaaaga gaggatgtat gattttcaga aaatatttat attcgtaata
      121 taaataaatt accatttgct taattcgtca aatgctcttg tatgtaagac ttcacgcaac
      181 gtctccccat caggaaacgc cagctccggt gcaatctcaa acagcggcca cagcataaat
      241 ccacgattct tcatatcgta gtgcggaacg gtcaggcgtt cggtatttat cacttcatta
      301 ccaaacagca tgatatcgag atccagcgtg cgtggtcccc agcgttcagc tttacgaaca
      361 cgatcctgtt gcagttctat gcgctgtgta tggttgagta actcttccgg ggcgagcgaa
      421 gtttcaagcg ccacggcggc gttgaggtaa tcgggttgat cttgcggccc cagcggtgga
      481 gtgcggtaaa acgaagaaac ggcaagaatg tggctttcag ggatatcgcc taatgctttc
      541 agggcagcat tgacctgctc cagcggagag gccagattgc tgcctatggc aatatacgcc
      601 actgtcatgc ggtaccctca cgacgcggtg cgcgtttgcg tggacgacga gtacggcgac
      661 gcggtgacgg ctcttcatcc aactcgttaa gcatcccttt ttgatctggt ggcgcggaaa
      721 cctggaactc accccaccat ttcaccagac gctgcagttc agcgttacgt tcaacttcag
      781 ctcgcaaggc caacaggtca taagccgcac ggaacttagg atgctccagc agtttccatg
      841 cgcgtttacc ctgacgacgg gacatacgca actgcaactg ccagatatcg cgggttaacg
      901 tcgtcagacg tttcgggatt gccagtgaac ggcaggcttc gtccagcacg tcgttcatcg
      961 ccagcgcgaa agcgtcgtga taggtcaggc cgctttcctg ggcgatcttc tgtgccgtct
     1021 ccagcagtgg gtaccagaac atggcggcaa acaagaacgc cgggttcacg cgcatatcgt
     1081 tatggatacg cgtatcggta ttcttcagca cctgttcaat gatccgctcc atcgggctgt
     1141 cgccattttc cgtgaagtag cgggtaatgg tcgggaacag cggctggaac agatgatatt
     1201 cacacaacag cttataggtt tcgtaaccgt agcccgcttg tagcagttta agcgattctt
     1261 caaacaggcg tgccggtggg atatcgttca gcagggtagc gaggcgaggg atcggttctg
     1321 cggtttccgg gctgatgcgc atacccaatt tggcggcaaa acgtaccgcg cgcagcatac
     1381 gtaccggatc ttcacggtag cgcgtttccg ggttaccaat cagacggata acgccgtcct
     1441 tcagatcctt catgccgcca acgtaatcac ggacggtaaa atccgctacg ctgtaataca
     1501 ggctgttgat agtgaaatcg cggcgctggg cgtcttcttc gatggagccg aaaatgttgt
     1561 cgcgcagcaa catgccgttt tgcccgcgtt gggaggtcgt gcggtcgctg acgttacctt
     1621 cgtggtgtcc acggaaggtt gcaacttcga taatctccgg gccaaacatc acatgagcca
     1681 gacggaaacg gcgacccaca aggcggcagt tacggaacag tttgcgcacc tgctcaggcg
     1741 tggcgttagt ggttacgtca aaatctttcg gctttttgcc aagtaacagg tcgcgcacgc
     1801 cgccgccaac cagccaggct tcgtatcccg ctttattgag cctgtacatt accttcaggg
     1861 cattttcact gatatctttg cgggaaatag catgctgctc acgcgggatc accgtcacct
     1921 gtggacgggc gactgcctgt tcagcctcgc tttcctcgcg gcttagcacc ttgcggcaaa
     1981 aattagcgac tcgggtaaaa atagtacacc tcggtagtgt caaacatcat tcaggacaaa
     2041 aaaatagcgg ctaatcatag ctcagcatga cgcatttgag aatgttgaat ttacaattgc
     2101 cgactcgggc acggcggtca gcgtccagtt tttgacggct gactgaagga tttgctcgac
     2161 gctgaaatcc tgccagtgtg cttctacctg ctgccccaga aattgaagtg ccgcgattag
     2221 taccgggcgt ggatcgcctt tcggcaacgc aggcgcatga ttctgcttgg aaagtttagc
     2281 gccttgtgga ttaagcgcca gcggcagatg aatgtaatct ggcactttcc agccaaaaag
     2341 ctggtacagc gagatttgcc ttactgttgg ttcaatcaga tcagccccac gcactatttc
     2401 tgtaacgccc tggaaatgat catcaaccac aacagccagg ttgtaggcga acaacccatc
     2461 acggcgatga atgataaaat cttcccgtgc cagtttttcg tcggcgtgaa taatgccgcg
     2521 cagctggtca gtaaattgcg tgaccggatg ctgctggcgg atacgcactg cggcgttgtc
     2581 tggtccatga tgcaacaccc ggcaatgacc gtcgtaaata ccgacaatgc tttgaatacg
     2641 cgcacgcgta caggtgcagt aataacttag tccttgttca tgtaaccagg cgagtgcttc
     2701 acgataggcg tcgtgacgtt gcgattgcca gagaacatcg ccgtcccagt gcagaccgta
     2761 atgttccagc tggcgcagga tagtttctgc ggcaccggga acttcacgag gcgggtcgat
     2821 atcttctatg cgtaccagcc agcgaccttg ccgggcgcga gcctgcaaat agctgccgag
     2881 cgcggcgatc agagagccaa aatgaagctc gccggaagga gagggggcga agcggccaat
     2941 atactgtgtg tctgtcatct ctttgaacaa aaaataaggc gggagcattt cccgcctgtg
     3001 gtaaacgtga tggaacggct gtaattagcc agccatctgt ttttcgcgaa tttcagccag
     3061 cgttttgcag tcgatgcaca gatcggctgt cgggcgcgct tccagacggc gaataccaat
     3121 ttcaacaccg caggattcgc agtagccgaa atcttcgtct tccacttttt tcagcgtctt
     3181 ctcgatcttt ttgatcagct tacgctcgcg atcgcggtta cgcagttcga ggctgaactc
     3241 ttcttcctgg gctgcacggt ctaccgggtc cgggaagttg gctgcttcat cctgcatatg
     3301 tgtaacggtg cgatcgactt catccctgag ttgattacgc catgcttcca gaatacgacg
     3361 gaagtgcgcc agctgggctt cattcatata ctcttcgccc ggcttctcct gatatggttc
     3421 caccccagcg atggcgagaa tactcaggga cgatgtttta cggttttgcc cttcttgcat
     3481 gttgcttctc cttaacacgc actatcgatc cccatgttcg ggggaaaaat gaggccgcta
     3541 taaatagcag atgcttttcc ggatagcaat tatctaaacg taacacttga caactgtgtg
     3601 aggaaaagcg tatttgcgca cgcgaccaga atgtaaatta accagttact tactttacta
     3661 caatgtaacc ggcagtgatt ttttaagagc catgccttca gcagaaattt ccgctttgta
     3721 agccagaatt tctacccccc tctgttgagc ttctgacaat agttgcgcgt atttctcatc
     3781 gatgtggcgc gcgggtgaaa accgtgtaat ggctgaatgc agcacggcga aaaagataac
     3841 cgcacgctgg ccttcagccg ctacgttcat caactcccga aggtgtttct gacctcgttc
     3901 agtgaccgca tcgggaaaat atccctgttc gttctccgct aacgtaaccg atttcacttc
     3961 aatatagcag tctggacgcg aatccgcctg caacataaag tcaatacggc tgcgttctgc
     4021 gccatatttt acttcgcttt tcagcgagct atagcctgac agttctgaaa ttgattcatt
     4081 aaggatagcc tctttcgtca acctgttagc ccaaagcgta ttgacgcaaa taaatgcgcc
     4141 gctctggctt tgagttagtt cccaggtgtg tgggtatttc cgtttggtgt tgtctgaagt
     4201 cgaataccag acggtatcgc cacgcgttgc acaaccggtc atcgcacccg tattcgggca
     4261 gtgtagcgtt aattcgcgac catcgggtgt gatcacatcg gctaaaaaac gtttgtaacg
     4321 ctgaattagc gtcgcgcgct gtagaagggg agagaattcc attgcgacaa tccttgttat
     4381 tgcattagcg cccagcgttt tagcggcgtg tagcgtgtgc gtccacgggc aaacgaggag
     4441 gcgtaaaggg tgaactccgt caccgcataa gaccagttaa aacctggcgg cgggattgtc
     4501 accgcctcgc tggcgtcgcg caataaggta atatgtggat gaaacggacg attgctttga
     4561 aaacaaccgc tgcgggcagc ctgtgaacgg agcatattcg ccagctggat taagccgcgt
     4621 ggcggctgac gcatccctaa ccacaccaca cgcgaacgca gccattgtcc ggcgtcatca
     4681 agcgtgagtg tgaaaccagg ttgacgaatc cgtccggcta aaagagaaag cgccttctct
     4741 ttctcggcgc tcacttcgcc taaaaatgcc agagtcagat gcaaattatc ggcggcgacc
     4801 ggacgtcccg cctcaggtgg gaagtgtgtg gcgcgccagt ggataatctg ttcgcggatt
     4861 tctgcaggta agtcgatagc aaagaacaga cgttgcggtt cagacatgtg aggcactcgg
     4921 ttatgaatta ccgcgatgct acaatgtggc gcgaagaatg ttaaccctct ggagcgtttt
     4981 gtgtcgtcgt tgcccgttgc tgccgtttta cctgaattac ttaccgctct cgattgtgcg
     5041 ccgcaggtat tattaagtgc gccgaccggg gccgggaaat caacctggct gccgctgcaa
     5101 ctgctggcgc atcccggcat taacgggaaa attatcctgc tggagccgcg tcgtctggcg
     5161 gcgcgtaacg tcgcgcaacg gctggaggag ctgcttaacg aaaagccagg cgataccgtt
     5221 ggctaccgga tgcgtgcgca aaactgcgtc gggccgaata cccgcctgga agtagttacc
     5281 gaaggcgtgc tgacgcggat gatccagcgt gacccggagt tgagcggtgt tggattggtg
     5341 atccttgatg aatttcatga gcgtagcttg caggcggatt tggcgttggc gctgttactc
     5401 gatgtgcaac aaggtctgcg tgatgacctt aaactgctaa ttatgtcggc tacgctggac
     5461 aacgaccgct tgcagcaaat gctgccagaa gcgcccgtcg tcatctcaga agggcgctcg
     5521 tttccggttg aacgccgtta tttaccgctg cccgcgcatc agcgttttga cgatgccgtt
     5581 gcggtagcca ccgctgaaat gctgcgtcag gaaagcggat cattactgtt atttttacct
     5641 ggcgtcggag aaattcagcg tgtgcaggaa caactggctt cgcgcatcgg cagtgatgta
     5701 ttgctctgcc cgctgtatgg cgcgttgtcg ctgaacgatc agcgaaaagc gatcctcccg
     5761 gcaccgcaag ggatgcgcaa agtggtgctg gcgaccaata ttgctgaaac cagtttaacc
     5821 atcgaaggta ttcgtctggt ggtggattgt gcccaggagc gtgtggcgcg ttttgatccg
     5881 cgcacggggc taacgcgact gattactcaa cgcgttagcc aggcatccat gacgcagcgt
     5941 gccgggcgcg ccgggcgtct ggagccgggt atctgcctgc atctaatcgc caaagaacaa
     6001 gcagaacgcg ctgccgcgca aagtgaaccg gaaatcttac aaagcgatct ttccggtttg
     6061 ctgatggaat tactgcaatg gggatgcagc gatccggcgc agatgagctg gctggatcaa
     6121 ccgccaacgg tgaatctact ggccgcgaaa cgcctgttac aaatgctggg ggcgctggag
     6181 ggtgaacggc ttagtgcgca ggggcaaaaa atggcagcgc tgggtaacga tccgcgttta
     6241 gcggcaatgc tggttagcgc gaagaacgac gacgaagctg ctaccgcggc aaaaattgcc
     6301 gccattctcg aagagccgcc acggatgggc aatagtgacc tgggcgtggc gttttcgcgc
     6361 aatcaaccag cctggcagca acgtagtcag caactgttaa aacgcttaaa cgtacgtggc
     6421 ggtgaggcag acagttcgct tatcgcgccg ctacttgccg gggcgtttgc cgatcgcatt
     6481 gctcgtcgcc gtgggcaaga tggacgctat caactggcaa acggcatggg agcgatgctc
     6541 gatgccgacg acgcgctaag ccgccacgaa tggttgatcg caccgttatt attgcagggc
     6601 agcgcctcgc cggatgcgcg gattttactg gcgctgccgg tcgatattga tgagttagta
     6661 caacgctgcc cgcagctggt acagcagtct gacactgtgg agtgggatga cgcgcaaggt
     6721 acgctgaaag cctggcgtcg gctgcaaatc ggtctgctga cggtgaaagt gcagccgctg
     6781 gcgaaaccct cggaagacga gttgcatcag gcgatgctta atggcatccg tgataaaggt
     6841 ttaagcgtgc tcaactggac ggcggaagcg gaacagctac gcttgcgttt gttatgcgcc
     6901 gcaaagtggt tgccggaata tgactggcca gcggttgatg atgaaagttt attggcgacg
     6961 ctggaaacgt ggctgctgcc acatatgact ggcgtacatt cactacgcgg cctgaaatca
     7021 ctcgacattt atcaggcact acgcggatta cttgattggg gaatgcagca acgtctggat
     7081 agtgaattgc ctgcgcatta cactgtgccg acgggaagcc ggatcgccat tcgttatcat
     7141 gaagataacc cgcccgcgct ggcggtgaga atgcaagaga tgtttggcga ggccaccaat
     7201 ccgacgatcg cccaggggcg cgtgccgctg gtgctggagt tgctttcacc tgcccaaagt
     7261 ccattacaaa tcacacgaga tttgagcgcc ttctggaaag gagcgtaccg tgaggtgcaa
     7321 aaagagatga aagggcgtta tcccaaacat gtctggccgg acgacccggc aaatactgca
     7381 ccgacgcgac ggacgaaaaa gtattcgtaa ggttggtttt ctccctctcc ctgtgggaga
     7441 gggccggggt gagggcatca gcgcgcacgt tcaccctcac cctaaccctc tccctcaagg
     7501 gagaggggac cgatcgaaca caaattttga gagatatctt cttctgtctt gtaacagaag
     7561 aacagaaaat cgggcttttg cgcctgaata ttgcggagaa aaagcatggc cgggaatgac
     7621 cgcgagccaa ttggacgcaa agggaaaccg acgcgtccgg tcaaacaaaa ggtaagccgt
     7681 cgtcgttacg aagatgacga tgattacgac gattatgatg actatgagga tgaagaaccg
     7741 atgccgcgca aaggtaaggg caaaggcaaa gggcgtaagc ctcgtggcaa acgcggctgg
     7801 ctatggctac tgctaaaact ggctatcgtt tttgccgtgc tgatcgccat ttacggcgtt
     7861 tatctcgatc aaaaaattcg tagccgtatt gatggcaagg tctggcaact gcctgcagca
     7921 gtttatggcc gaatggtcaa tcttgagcca gatatgacca tcagcaagaa cgagatggtg
     7981 aagctgctgg aggcgactca gtatcgtcag gtgtcgaaaa tgacccgtcc tggcgaattt
     8041 accgtgcagg ccaacagcat tgagatgatc cgccgtccgt ttgatttccc ggacagtaaa
     8101 gaagggcagg tgcgtgcgca tctgaccttt gatggtgatc atctggcgac catcgtcaat
     8161 atggagaaca accgtcagtt cggctttttc cgtcttgatc cgcgtctgat caccatgatc
     8221 tcctcgccaa acggtgagca acgtctgttt gtgccgcgca gtggtttccc tgatttgctg
     8281 gtggatactt tgctggcgac agaagaccgc catttctacg agcatgatgg gatcagcctc
     8341 tactcaattg ggcgtgcggt gctggcaaac ctgaccgcag gtcgcacggt gcagggtgcg
     8401 agtacgctga cgcaacagct ggtgaaaaac ctgttcctct ccagcgagcg ctcttactgg
     8461 cgtaaagcga acgaagccta catggcgctg atcatggacg cgcgttacag caaagaccgt
     8521 attcttgagc tgtatatgaa cgaggtgtat ctcggtcaga gcggcgacaa cgaaatccgc
     8581 ggcttcccgc tggcaagctt gtattacttt ggtcgcccgg tagaagagct aagcctcgac
     8641 cagcaggcgc tgttagtcgg tatggtgaaa ggggcgtcca tctacaaccc gtggcgtaac
     8701 ccgaaactgg cgctggagcg acgtaatctg gtgctgcgtc tgctgcaaca gcaacagatt
     8761 attgatcaag aactctatga catgttgagt gcccgtccgc tgggggttca gccgcgcggt
     8821 ggggtgatct ctcctcagcc agcctttatg caactggtgc gtcaggagct gcaggcaaaa
     8881 ctgggcgata aggtaaaaga tctctccggc gtgaagatct tcactacctt tgactcggtg
     8941 gcccaggacg cggcagaaaa agccgccgtg gaaggcattc cggcactgaa gaaacagcgt
     9001 aagttgagcg atcttgaaac tgcgattgtg gtcgtcgacc gctttagtgg tgaagttcgt
     9061 gcgatggtgg gaggttctga gccgcagttt gcgggctaca accgtgcgat gcaggcgcgt
     9121 cgttcgattg gttcccttgc aaaaccagcg acttatctga cggctttaag ccagccgaaa
     9181 atctatcgcc tgaacacgtg gattgccgat gcgccaatcg cgctgcgtca gccgaatggc
     9241 ctggtctggt caccgcagaa cgatgaccgt cgttatagcg aaagcggcag agtgatgctg
     9301 gtggatgcgt tgacccgttc gatgaacgtg ccgacggtaa atctggggat ggcgctgggg
     9361 ctgcctgcag ttacggatac ctggatcaaa ctgggcgtac cgaaagatca gctgcatccg
     9421 gttccggcga tgctgctggg ggcgttgaac ttaacgccaa tcgaagtggc gcaggcgttc
     9481 cagaccatcg ccagcggtgg taaccgtgca ccgctttctg cactgcgttc ggtaatcgcg
     9541 gaagatggca aggtgctgta tcagagcttc ccgcaggcag aacgcgctgt tccggcgcag
     9601 gcggcgtatc tgacactatg gaccatgcag caggtggtac aacgtggtac gggtcgtcag
     9661 cttggggcga aatacccgaa cctgcatctg gcagggaaaa cagggactac caacaataac
     9721 gtagatactt ggtttgcagg cattgacggc agcacggtga ccatcacctg ggcaggccgt
     9781 gataacaacc agccgaccaa actgtatgga gccagcgggg caatgtcgat ttatcagcgt
     9841 tatctggcta accagacgcc aacgccgctg aatcttgttc cgccagaaga tattgcagat
     9901 atgggcgtgg actacgacgg caactttgtt tgcagcggtg gcatgcgtgt cttgccggtc
     9961 tggaccagcg atccgcaatc gctgtgccag cagagcgaga tgcagcagca gccgtcaggc
    10021 aatccgtttg atcagtcttc tcagccgcaa cagcaacctg ctcagcaaga gcagaaagac
    10081 agcgacggtg tagccggttg gatcaaggat atgtttggta gtaattaaca tctaagcgtg
    10141 aaataccgga tggcgagttg ccatccggta aaataacatc ccatctaaga tattaaccct
    10201 ttcttttcat ctggttgttt attaaccctt caggaacgct cagattgcgt accgcttgcg
    10261 aacccgccag cgtttcgaat attatcttat ctttataata atcattctcg tttacgttat
    10321 cattcacttt acatcagaga tataccaatg gcgcgttcca aaactgctca gccaaaacac
    10381 tcactgcgta aaatcgcagt tgtagtagcc acagcggtta gcggcatgtc tgtttatgca
    10441 caggcagcgg ttgaaccgaa agaagacact atcaccgtta ccgctgcacc tgcgccgcaa
    10501 gaaagcgcat gggggcctgc tgcaactatt gcggcgaagc actctgctac tgcgactaaa
    10561 acggatacac caattgaaaa aacgccgcag tctatttcgg ttgtgacaaa tgaagagatg
    10621 cagatgcatc aatttcagtc tgtaaaagaa gcattaggtt atacacctgg cgttacggtt
    10681 agcagtcgtg gtgcttctaa tacatatgat tttgttatca ttcgtggttt ctcatctgtt
    10741 ggtctgaatc aaaataatta ccttgatgga ctaaaacttc agggcaactt ttataacgat
    10801 gctgtgattg atccttacat gctcgagagg gttgaactga tgcgtgggcc gacgtctgtt
    10861 ctctatggaa aaagtaatcc tggtgggatt atttctatgg tgagtaagcg tccgaccact
    10921 gaacccctga aagaaattca gtttaaaatg gggacggata atctgtttca gaccggattc
    10981 gatttcagtg atgcactgga tgataacggt gagttctctt accgtttgac gggcctcgct
    11041 cgctcaacaa acgaacagca gaaaaactct gaatctcagc gttataccat tgctccatca
    11101 ttctcatggc gtccagacga caaaaccaat tttactttcc tgtcctattt ccagaatgaa
    11161 ccagaaacgg gttattacgg ttggttgccg aaagagggga ccgttgagcc attgcctaat
    11221 ggtaagcgtc taccgactga cttcaatgaa ggtgcatcga ataatacata ctcccgtaac
    11281 cagaaaatgg tgggatatag ttttgaacat ggttttaatg acaccttcac cgtgcgtcag
    11341 aatctgcgtt tcagtgaaat gaaaacctca cagaaaagtg tttatggcac agggattgct
    11401 ggtgatggtc ataccctaaa ccgcgggaca gtggtggata atgagcgtct acaaaacttt
    11461 agcgttgata cccaacttga aagtaagttt gctacaggtg acgtcgagca tactttgctg
    11521 acaggggtag acttcatgcg gatgcgtaat gatatcaatg ccagctttgg atccgcacca
    11581 tccatcgatc tttataacaa atatcaccct gaatactttg catttggtag cgcagagcca
    11641 taccagatga atgaaagcaa acaaacaggt atttatgttc aggatcaggc ggaatggaat
    11701 aaatgggtat tcactctggg gggacgctac gattggtcta agcaagcgac cactgttcgt
    11761 gaaaactctt atacgccgac tgaaggttat attgagcgca atgatcatca gttcacctgg
    11821 cgcggtggtg taaattactt attcgataat ggtatttcac cttactttag ctatagccag
    11881 tcctttgaac cgagtgcttt cgatctgtgg agcaacccac gcatttccta taagccatcg
    11941 aaaggtgaac agtatgaagc tggcgtaaaa tatgttccga atgatatgcc ggtcgttgtt
    12001 acgggcgcag tctatcaatt gacgaaaaca aataacctga cagcagaccc aacaaaccca
    12061 ttagcgcaag tcccagcagg tgagattcgc gctcgtggtg tggaacttga agcaaaagcg
    12121 gcgttaaatg ccaatattaa cttgacggct tcttatacct acaccgatgc ggaatacacc
    12181 aaagacacca atctcaaagg taaaactcca gaacaagtac cggagcatat ggcatctctc
    12241 tggggggatt ataccttcaa tgaagggccg ctttctggtt taacattggg aacaggtggt
    12301 cgttttattg gttccagcta tggtgatccg gcaaacactt ttaaagtggg tagcgcagct
    12361 gtaatggatg ctgttgtaaa atatgatctg gcacgctttg gtatggcggg atccagcctt
    12421 gctgtgaacg tcaacaattt gctcgatcgt gagtatgttg ccagttgctt ccagacttat
    12481 ggctgcttct ggggcgcaga acgtcaggtc gttgcaaccg caaccttccg tttctaattt
    12541 ctcttttggg gcacggattt ccgtgcccat ttcacaagtt ggctgttatg caggaataca
    12601 cgaatcattc cgataccact tttgcactgc gtaatatctc ctttcgtgtg cccgggcgca
    12661 cgcttttgca tccgctgtcg ttaacctttc ctgccgggaa agtgaccggt ctgattggtc
    12721 acaacggttc tagtaaatcc actctgctca aaatgcttgg ccgtcatcag cctccgtcag
    12781 aaggggagat tcttcttgat gcccagccgc tggaaagctg gagcagcaaa gcgtttgccc
    12841 gcaaagtggc ttatttgccg cagcagcttc ctccggcaga agggatgacc gtgcgtgaac
    12901 tggtggcgat tggtcgttac ccgtggcatg gcgcgctggg gcgctttggg gcggcagatc
    12961 gcgaaaaagt cgaggaagct atctcgctgg ttggcttaaa accgctggcg catcggctgg
    13021 ttgatagtct ctctggcggc gaacgtcagc gggcgtggat cgccatgctg gtggcgcagg
    13081 atagccgttg tctgttgctc gacgaaccga cctcggcgct ggatatcgcc caccaggttg
    13141 atgtgctggc gctggtgcac cgtttaagtc aggagcgtgg cctgacggtc attgccgtgt
    13201 tgcacgatat caatatggcg gcacgctact gtgattatct ggtcgccctg cgcggtggtg
    13261 aaatgattgc tcagggaacg cctgcggaaa ttatgcgcgg cgataccctc gaaatgattt
    13321 atggcatccc gatgggtatt ttgccgcatc cggcgggtgc tgcacctgtg agttttgttt
    13381 attgatgagc ggcttacctc ttatttcgcg ccgtcgactg ttaacggcga tggcgctttc
    13441 tccgttgtta tggcagatga ataccgccca cgcggcggct attgatccca atcgtattgt
    13501 ggcgctggag tggttgccgg tggaattact gctggcgctc ggcatcgtgc cttacggcgt
    13561 agcggatacc atcaactatc gcctgtgggt cagcgaacca ccattgccgg actcagtgat
    13621 cgacgtcggt ttgcgcacag aacctaacct tgaactgctg accgaaatga aaccgtcgtt
    13681 tatggtctgg tcggcaggat atggcccttc agcagaaatg ctggcacgta ttgcgccggg
    13741 gcgtggattt aacttcagcg acggcaaaca gccgctggcg atggcgcgta aatcactgac
    13801 ggaaatggca gatttactta acctgcaaag cgcagcagaa acgcatttag cgcaatatga
    13861 agactttatc cgcagcatga aaccccgctt tgtgaagcgt ggtgcacgcc cgttattgct
    13921 gacgacgctt atcgatccgc gccatatgtt ggtcttcggt ccaaacagct tgttccagga
    13981 aattcttgat gagtacggca tcccaaatgc ctggcaaggg gaaaccaact tctggggcag
    14041 taccgccgtc agtatcgatc gtctggcagc gtataaagac gttgatgtgc tctgttttga
    14101 tcacgacaac agcaaagaca tggatgcgct aatggcaacc ccgctgtggc aggccatgcc
    14161 gtttgtccgc gccggacgct ttcagcgcgt acccgcagtc tggttttatg gtgcgacgct
    14221 ctcggcaatg cactttgtgc gcgttctgga taacgccatc ggaggtaaag cgtgagtaaa
    14281 cgaattgcgc ttttcccggc gttattgctg gcgctgctgg tgattgtcgc tacggcgctg
    14341 acctggatga acttttcgca ggcgctgccg cgtagccagt gggcgcaggc cgcctggtcg
    14401 ccggatattg acgtcatcga gcagatgatt tttcactaca gcttgctgcc gcgtctggcg
    14461 atttcgctgc tggtgggcgc aggcctgggg ctggtgggcg tgctgtttca gcaagtgctg
    14521 cgtaatccgc tggcggaacc gacgacactt ggcgttgcta caggcgcgca actggggatt
    14581 accgtcacta cgctctgggc gatcccaggg gcgatggcga gtcagtttgc tgcgctggcg
    14641 ggcgcttgcg ttgttggctt aatcgtcttt ggcgtcgcgt gggggaaacg gctttcgccg
    14701 gtaacgctga tcctcgcggg gctggtagtg agcctttatt gtggggcaat caatcagtta
    14761 ctggttatct tccaccatga ccaactgcaa agcatgttcc tgtggagcac cggaacgctg
    14821 acgcaaaccg actggggcgg tgttgagcgt ttatggccgc agttgctggg cggtgtgatg
    14881 ctgacgttgc tgctacttcg cccgttaacc ctgatggggc ttgatgatgg cgtggcgcgc
    14941 aatctcgggc tggccttgtc gctcgcgcgt ctggcggcgc tgtcgctggc gattgtcatc
    15001 agtgcgctgc tggtgaacgc ggtggggatt atcggcttta tcgggttgtt tgcgccgttg
    15061 ctggcaaaaa tgctgggggc gcggcgtctg ctgccgcgac tgatgctggc gtcgttgatt
    15121 ggtgcgctga tcctctggct ttccgatcaa atcatcctct ggctgactcg cgtgtggatg
    15181 gaagtgtcca ccggttcggt cactgcgttg atcggtgcgc cgctgctact gtggctgttg
    15241 ccgcgtttac gcagcattag cgcgccggat atgaaggtca acgatcgtgt cgcggctgaa
    15301 cgccaacatg tgctggcgtt tgccctcgcg ggcggcgtgc tgctgttgat ggctgtggtg
    15361 gtggcgctgt cgtttggtcg tgatgcgcac ggctggatgt gggcgagcgg ggcgttgctc
    15421 gatgatttaa tgccctggcg ctggccgcga attatggcgg cgctatttgc gggcgtcatg
    15481 ctggcggtgg cgggctgtat tattcagcga ctgaccggca acccgatggc aagcccggaa
    15541 gtgctgggga ttagctccgg cgcagcgttt ggcgtggtac tgatgctgtt tctggtaccg
    15601 ggtaatgctt ttggctggct gttacccgcg ggaagtatcg gtgccgcggt gacgctgttg
    15661 attattatga tcgccgccgg gcgcggtgga ttttccccac accgcatgtt actggcgggg
    15721 atggcgttaa gtaccgcatt caccatgctt ttaatgatgt tgcaggcgag tggtgacccg
    15781 cgaatggcgc aagtgctcac ctggatctct ggttcgacct acaacgccac cgatgcgcag
    15841 gtctggcgta ccggaattgt gatggtgatt ttgctggcga ttaccccgct gtaccgccgc
    15901 tggctgacca ttttacctct gggcggtgat accgcacgag ctgtgggaat ggcgctgacg
    15961 ccgacgcgaa ttgcgctgct gctgttagcg gcttgcctga cggcgacctc gacgatgact
    16021 attggaccgt tgagttttgt tggtttaatg gcaccgcata ttgcgcggat gatgggtttt
    16081 cgacggacga tgccacacat cgtaatttcg gcgctggtgg gtggtttact gctggtattc
    16141 gctgactggt gtgggcggat ggtgctgttt ccattccaga tcccggcggg gctgctgtcg
    16201 acctttatcg gcgcgccata ttttatctat ttgttgagaa agcagagccg ttaattgagt
    16261 gcctcgcccg gtgggcgagg caaaattatc acaacttcgc aaatacccga cgtgcagcat
    16321 cgatggtgtt attgatatct tccatgctgt gcgccacaga cataaagccc gcttcaaacg
    16381 ctgacggtgc caggtaaaca ccttcgtcca gcatcatatg gaagaaacgc ttaaagcgtt
    16441 ccacgtcaca ggccatcaca tcctgatagc acgtcacgga ctcggcgtcg gtaaagaaaa
    16501 taccgaacat gccgccaacg tggttaacga ccagcggagt tccggcttct tctgccgctt
    16561 ccagcagacc ttctgccaga cgtgttgtca gctcatccag cgtttcgtga acgcccggct
    16621 gcgcgacttc attcagacag gcgaaacccg ctgccatcgc aatcgggtta ccggaaagcg
    16681 tacccgcctg atagaccgga cccgtcgggg ccagcgcatc cattacatca cgacgaccac
    16741 cgaatgcgcc taccggcatt ccaccgccga tgattttgcc gaggcaggtt aaatctggca
    16801 ctacgccgta ataatcctgt gcgccagcca gtgccacgcg gaagccggtc atcacttcat
    16861 cgatgatcag caacgcgcca aattcgtcgc acagcgcacg cagacctggc aggaactctg
    16921 gctgcggcgg aacacagttc atattgcctg ccaccggctc gacgataata caggcaatct
    16981 cttgcgggta ttgctcaaac gcggcgcgta cagaagccag atcgttataa gtacaggtta
    17041 aggtatgttt ggcgaaatct gccggaacac ccggcgagtt tggctggcct aacgtgagtg
    17101 cgccagaacc ggctttcacc agcaggcagt cagcgtgacc gtggtaacaa ccttcaaatt
    17161 taatgatttt gtcgcgaccg gtaaaaccac gggccaggcg gatggcgctc atggtcgctt
    17221 cagtgccgga gttcaccatg cgcaccatat ccatggtcgg gaccagttcg gtcaccagtt
    17281 gcgccatttt cacttccatt tcggtcggtg caccaaagct taaaccacgc tcggcggctt
    17341 caatcgcggc attgcggata gccggatggt tatggcccag caccatcggc ccccaggaac
    17401 cgacataatc gatataggct ttgccatcaa catcgtacag ataagcgccg tccgcttttt
    17461 cgataaacag tggagtgccg cccacgccag taaaggcgcg aacaggggag ttcacaccgc
    17521 cagggagcag ctcgcgcgct gcgctgtaaa gattttcaga cttactcatg gagggttcct
    17581 gattcgtaga aaaagtgaat ggctgctatt ctatgttatt cataacaagt taaatactcg
    17641 tcaaacatca ggctgcttgt actggtgcaa tcctgatttc ttagagtata aaagttttgt
    17701 gcatttgaaa cattacgctt tgcaaaggat tttcatggaa cgtgcgagta aaatgccgtc
    17761 atcttatttg tatgaccaat aagtgatcat tggatgaaaa ctgatactcc ctctttagaa
    17821 acaccgcagg ccgcgcgcct gcgacgcaga caactgattc gccaacttct tgagcgcgat
    17881 aaaaccccgt tagccatttt gtttatggcg gcagtcgtcg gcacgcttgt cgggctggca
    17941 gcggttgctt ttgacaaagg tgtcgcctgg ttgcagaacc aacgtatgga ggcgctggta
    18001 catactgctg ataattatcc gcttctgtta accgtcgctt ttctctgttc ggcggtgctg
    18061 gcgatgttcg gctacttttt ggtgcgcaaa tacgcgccgg aagcaggtgg ttcggggatc
    18121 ccggaaattg aaggggcgct ggaagatcaa cgtcccgttc gctggtggcg tgtgttgccg
    18181 gtgaaattct ttggcgggct ggggacactc ggcggaggca tggtgctggg gcgcgaaggg
    18241 ccaaccgtgc agatcggcgg caatatcggt cgcatggtac tcgatatttt ccgcctgaaa
    18301 ggtgatgaag ctcgccatac gctgctggca accggtgctg ctgcggggct ggctgcggcc
    18361 tttaacgcgc cgctggcggg tattttgttt attatcgaag agatgcgtcc gcagtttcgc
    18421 tatacgttaa tttcgattaa agcggtattt attggcgtca ttatgtcgac cattatgtac
    18481 cggattttta atcatgaagt tgcgttgatt gacgtcggta aactttctga tgcgccgctt
    18541 aatacgctgt ggctttatct gatcctcggt attatttttg gcattttcgg ccctattttt
    18601 aataaatggg tgctggggat gcaggatttg ctgcaccgtg tgcacggcgg caatattacc
    18661 aaatgggtgc taatgggcgg tgcgattggc ggtctgtgtg gattgctggg gtttgtggca
    18721 ccagcaacgt cgggcggcgg ttttaacctg attcctatcg ctaccgcagg gaatttcagc
    18781 atgggaatgc tggtgtttat cttcgtcgcg cgggtcatta ccaccttact gtgcttctct
    18841 tccggcgcgc cgggcggtat ttttgccccg atgctggcgc tgggtactgt gctgggaacc
    18901 gctttcggaa tggttgtcgt tgagctgttt ccgcaatatc accttgaggc ggggactttt
    18961 gctattgccg gaatgggggc gttactggcg gcatctattc gcgcgccgtt aacggggatc
    19021 attttggttc tggagatgac cgataactac cagctcattt tgccaatgat tattaccggt
    19081 cttggcgcaa cactattagc gcaatttacc ggcgggaaac cgctatattc ggagattctt
    19141 gcgcgcacgc tggcaaaaca ggaagctgag caactggcgc gaagcaaggc cgcatcagcc
    19201 agcgagaata cttgaacgaa ataccagggt attagataat ggcgattatt attgggttag
    19261 aatttgccca attgccgatg tcgtttggag caaaatatga gtgatgacgt agcactgccg
    19321 ctggagttta ccgacgcagc agccaacaaa gttaaaagcc tgatcgctga cgaagataac
    19381 ccgaatctga aattacgcgt gtatatcacc ggtggcggtt gcagcggctt ccagtatggt
    19441 ttcacctttg atgatcaggt gaacgaaggc gatatgacca tcgaaaaaca gggcgttggc
    19501 ctggtggttg atccgatgag cctgcaatat ctggtcggtg gttccgttga ctataccgaa
    19561 ggactggaag gttctcgttt catcgtgacc aacccgaacg cgaaaagcac ctgcggttgc
    19621 ggttcttcct ttagcatcta atctgttgtt catatgccgg ataaactatc cggcacatct
    19681 tctctcttca acgcccattc tcatccagcg caaacgtcgg tagcttaaga tgccaacgaa
    19741 tagccgccag ccgaatcaat agcgtcacga ccatgcccat catactggct gtttccagtg
    19801 gtacggaaaa tgtgtaataa gccgtagcgt ggacaatacc gccgataata caggcagttg
    19861 cgtagatttc tgtacgtaaa atcatgggga tttcgcgggc cagtacatca cgaatgatcc
    19921 cgccgccaac gccagtaatg acgcccatac aaaccgcgat taacggaccg gcttccgcat
    19981 taaaggcttt attcacgcca atgccgacaa acaccgccag accaacggcg tccagcaccg
    20041 gcaacatcca ttttggtaag cgtcttggct ggcgcaccag cacgatggtc agcatgctgg
    20101 ttaccattgc aacgaccaga tcggtgggat ctttcaccca aaataccggg ccgtgatcca
    20161 gcgccatgtc gcgaattgtc ccgccgccta cagcggtaac cacgcccagt accagaacac
    20221 caaaagggtc catacgcaat tttccggcta acaaaacgcc ggagatggca aataccgctg
    20281 tgccgactat atccagccaa tagacgagca ttgttcaatc cccactgagc acctaaaaag
    20341 gtcaggcgct aatctacctg tgaaagcgca ttacagagct gttgtgcagc gaggataata
    20401 cgtgggcttg cacgtcaaac cagtcactcg tgagaggaat aacgggaatt ttgagctgtt
    20461 caccccagta ttgtttgatt ttaggaattt ggtccggtcc gcctgtaatg acaatcgcct
    20521 gtggcgagcg tgctaacacc tgttcgcggc taacttgcgg ccaaggaacc cggctgtctt
    20581 taaagatgtt ttctccgcca caaacttcga gtacctggtt ttgaatcgac tcttttccac
    20641 tggtaaatgg cggattaatg ccgaattgca gaaaaacacg ttttttaggt ttatcagcat
    20701 attgcgcttt caattgcgcg tactgatcca gcagggattg cgcggcttgt tcggccttat
    20761 ccggttgcgg actccagggg gccagttgac gtaacgcatt ggcaatttgt tcaatgcttg
    20821 tcgcatcgac ccacatcact tttattcccg gcgaagccag ctggtcaacc tgccgctcgg
    20881 cattacctcc acgccaggca atcaccagat cgggtttcag cgcgacaatg cgttccagat
    20941 tcatcccctg ccaggtggaa acctgctcaa tcttttgcgc ttgtggagga tagtcggaat
    21001 agctgctgac cccaaccggc gtgatcccgg cggcaaaggc aagttcagtg ttggcgggag
    21061 aaagcgtgat gacgcgcggt gccgcgttga gccacagtgg cgcgagaaaa gacagggcga
    21121 ccagcgccct gaacagtgac ttagccatgt gccagtttct gcaccagtga ctcaaccatc
    21181 aggctggact gtttagcggc aacagccagg aactcatcga agctaagatg agactgttga
    21241 tcggccacgt cggagatggc gcgtacgaca acaaacggga cgttgaaatt gtggcagaca
    21301 tgggcgattg ccgtcgcttc catctctaca gcaatggcct gtgggaagtt gtggcggatt
    21361 ttcgccagac caacagaacc gttgatgaaa gcgtcgccgc taacaatcag gccacgtaca
    21421 gcgttaagat tcagttcggc aatgcaggcc tcagcggcag cgatcagttt atcgtcagct
    21481 ttaaagcctg ccggacagcc tggtaactga ccgtattcat aaccaaatgc cgtgacatcc
    21541 gcgtcgtgat aacgtgcttc gtccgagaca acgatatcgc ccactttcaa cgttggtgcc
    21601 aggccaccgg cagaaccggt gttaataatc acatctggct tgccgtgttc caacagcaaa
    21661 gtggcaccca gcgccgcagc gactttaccg atgcccgatt tcagaagcgc aacctcggtt
    21721 ccattcagtt ggccggtata gatttcgcaa ccgccgagac tgatagtttg acgattttcg
    21781 attttgtcac gcagcagcgt aacttcttct tccattgcac caatgatgcc gattttcata
    21841 gatttactcg cgataagccc gatttgaagg catagtttac catgcgctta cggggaagcg
    21901 tatttctcac gcgggagagg acatggcaca gattgatttc cgaaaaaaaa taaactggca
    21961 tcgtcgttac cgttcaccgc agggcgttaa aaccgaacat gagatcctgc ggatcttcga
    22021 gagcgatcgc gggcgtatca tcaactctcc ggcaattcgt cgtctgcaac aaaagaccca
    22081 ggtttttcca ctggagcgca atgccgccgt gcgcacgcgt cttacccact cgatggaagt
    22141 ccagcaggtg gggcgctaca tcgccaaaga aattctaagc cgtatgaaag agcttaaatt
    22201 actggaagca tacggcctgg atgaactgac cggccccttt gaaagcattg ttgagatgtc
    22261 atgcctgatg cacgatatcg gcaatccgcc gtttggtcat tttggcgaag cggcgataaa
    22321 tgattggttt cgccagcgtt tgcacccgga agatgccgaa agccagcctc tgactgacga
    22381 tcgctgcagc gtggcggcac tacgtttacg ggacggggaa gaaccgctta acgagctgcg
    22441 gcgcaagatt cgtcaggact tatgtcattt tgaggggaat gcacaaggca ttcgtctggt
    22501 gcatacattg atgaggatga atctcacctg ggcacaggtt ggcggtattt taaaatatac
    22561 ccgtccggcg tggtggcgtg gcgaaacgcc tgagacacat cactatttaa tgaaaaagcc
    22621 gggttattat ctttctgaag aagcctatat tgcccggttg cgtaaagaac ttaatttggc
    22681 gctttacagt cgttttccat taacgtggat tatggaagca gccgacgaca tctcctattg
    22741 tgtggcagac cttgaagatg cggtagagaa aagaatattt accgttgagc agctttatca
    22801 tcatttgcac gaagcgtggg gccagcatga gaaaggttcg ctcttttcgc tggtggttga
    22861 aaatgcctgg gaaaaatcac gctcaaatag tttaagccgc agtacggaag atcagttttt
    22921 tatgtattta cgggtaaaca ccctaaataa actggtaccc tatgcggcac aacgatttat
    22981 tgataatctg cctgcgattt tcgccggaac gtttaatcat gcattattgg aagatgccag
    23041 cgaatgcagc gatcttctta agctatataa aaatgtcgct gtaaaacatg tgtttagcca
    23101 tccagatgtc gagcagcttg aattgcaggg ctatcgggtc attagcggat tattagagat
    23161 ttatcgtcct ttattaagcc tgtcgttatc cgactttact gaactggtag aaaaagaacg
    23221 ggtgaaacgt ttccctattg aatcgcgctt attccacaaa ctctcgacgc gccatcggct
    23281 ggcctatgtc gaggctgtca gtaaattacc gtcagattct cctgagtttc cgctatggga
    23341 atattattac cgttgccgcc tgctgcagga ttatatcagc ggtatgaccg acctctatgc
    23401 gtgggatgaa taccgacgtc tgatggccgt agaacaataa ccaggctttt gtaaagacga
    23461 acaataaatt tttacctttt gcagaaactt tagttcggaa cttcgcgcta taaaacgaat
    23521 ctgaagaaca cagaaatttt gcgttatctg ttaatcgaga ctgaaataca tgaaaaaaac
    23581 cacattagca ctgagtgcac tggctctgag tttaggtttg gcgttatctc cgctctctgc
    23641 aacggcggct gagacttctt cagcaacgac agcccagcag atgccaagcc ttgcaccgat
    23701 gctcgaaaag gtgatgcctt cagtggtcag cattaacgta gaaggtagca caaccgttaa
    23761 tacgccgcgt atgccgcgta atttccagca gttcttcggt gatgattctc cgttctgcca
    23821 ggaaggttct ccgttccaga gctctccgtt ctgccagggt ggccagggcg gtaatggtgg
    23881 cggccagcaa cagaaattca tggcgctggg ttccggcgtc atcattgatg ccgataaagg
    23941 ctatgtcgtc accaacaacc acgttgttga taacgcgacg gtgattaaag tccagctgag
    24001 cgatggccgt aagttcgacg cgaagatggt cggcaaagat ccgcgctctg atatcgcgct
    24061 gatccaaatc cagaacccga aaaacctgac cgcaattaag atggcggatt ctgatgcact
    24121 gcgcgtgggt gattacaccg tagcgattgg taacccgttt ggtctgggcg agacggtaac
    24181 ttccgggatt gtctctgcgc tggggcgtag cggcctgaat gctgaaaact acgaaaactt
    24241 catccagacc gatgcagcga tcaaccgtgg taactccggt ggtgcgctgg ttaacctgaa
    24301 cggcgaactg atcggtatca acaccgcgat cctcgcaccg gacggcggca acatcggtat
    24361 cggttttgca atcccgagca acatggtgaa aaacctgacc tcgcagatgg tggaatacgg
    24421 ccaggtgaaa cgcggtgagc tgggtattat ggggactgag ctgaactccg aactggcgaa
    24481 agcgatgaaa gttgacgccc agcgcggtgc tttcgtaagc caggttctgc ctaattcctc
    24541 cgctgcaaaa gcgggcatta aagcgggtga tgtgatcacc tcactgaacg gtaagccgat
    24601 cagcagcttt gccgcactgc gtgctcaggt gggtactatg ccggtgggca gcaaactgac
    24661 cctgggctta ctgcgcgacg gtaagcaggt taacgtgaac ctggaactgc agcagagcag
    24721 ccagaatcag gttgattcca gctccatctt caacggcatt gaaggcgctg agatgagcaa
    24781 caaaggcaaa gatcagggcg tggtagtgaa caacgtgaaa acgggcactc cggctgcgca
    24841 gatcggcctg aagaaaggtg atgtgattat tggcgcgaac cagcaggcag tgaaaaacat
    24901 cgctgaactg cgtaaagttc tcgacagcaa accgtctgtg ctggcactga acattcagcg
    24961 cggcgacagc accatctacc tgttaatgca gtaatctcac tcaacccctt cctgaaaacg
    25021 ggaaggggtt ctccttacaa tctgtgaact tcaccacaac tccatacatc ttcatcatcc
    25081 tttaggcatt tgcacaatgc cgtacgttac gtacttcctt atgctaagcc gtgcataacg
    25141 gaggacttat ggctggctgg catcttgata ccaaaatggc gcaggatatc gtggcacgta
    25201 ccatgcgcat catcgatacc aatatcaacg taatggatgc ccgtgggcga attatcggca
    25261 gcggcgatcg tgagcgtatt ggtgaattgc acgaaggtgc attgctggta ctttcacagg
    25321 gacgagtcgt cgatatcgat gacgcggtgg cacgtcatct gcacggtgtg cggcaaggga
    25381 ttaatctacc gttacggctg gaaggtgaaa ttgtcggcgt aattggcctg acaggtgaac
    25441 cagagaatct gcgtaaatat ggcgaactgg tctgcatgac ggctgaaatg atgctggaac
    25501 agtcgcggtt gatgcacttg ttggcgcagg atagccgttt gcgggaggaa ctggtgatga
    25561 acctgattca ggcagaggag aatactcccg cacttactga atgggcgcaa cggctgggga
    25621 tcgatctcaa tcaaccgcga gtggtggcta ttgttgaggt cgacagcggt cagcttggtg
    25681 tggacagcgc aatggcggag ttacaacaac tgcaaaacgc gctgactacg cccgagcgta
    25741 ataatctggt ggcgattgtc tcgctaaccg aaatggtggt gttgaaaccg gcgttgaact
    25801 cttttgggcg ctgggatgca gaagatcatc gtaagcgagt tgaacaactg attacccgca
    25861 tgaaagagta cggccggctg cgttttcgcg tttcactggg caactatttt accggtcctg
    25921 gcagtattgc ccgatcctat cgtacggcga aaacgacgat ggtggtgggt aaacagcgga
    25981 tgccagaaag tcgctgctat ttttatcagg atctgatgtt acctgtgtta ctcgacagtt
    26041 tgcgtggcga ctggcaggcc aacgaactgg cgcgaccgct ggcgcggctg aaagcgatgg
    26101 acaataacgg cttgctgcga cgaacgctgg cggcgtggtt tcgtcacaat gtgcaaccgc
    26161 tggcaacgtc aaaggcgttg tttatttatc gtaataccct ggagtatcgg cttaatcgta
    26221 tatcggaact gaccgggctt gatttgggca attttgatga caggttgctg ctgtatgtgg
    26281 cgttacaact ggatgaagag cggtaggtta tgcgttaagg ttgaggcggc gctgtctcat
    26341 ttccctcagc ccgaagggga gaggggaatg cccgaattaa ccgtcaattc gggattattt
    26401 acgcgttagt ttttccagat cggcttcaat ctcgctgatc ttattggtta cgactgactc
    26461 caggtgacgt aagtcgtcga ggatcttacg cttaagatca acttcgctgc ggtcacgctg
    26521 gcagatttga tcaagctcat caatgatata ccgtagattc gggctgattt cctggacttc
    26581 tttataaccc tgacccacac catcagcgac gaccgtttta cgctgacgcg gatatttaaa
    26641 cttaacgctc ttggcgaaaa actcgccttt gtctttctgg aaatagattt tcagaatatc
    26701 gttgttggct tcctgccgga ggctgtaacg atcaatttct tcaggattgg taatacccag
    26761 acttttcaga ttgtcgtaca tagcgttacc tcaaaatgag tcagtaaatt gtgcttattt
    26821 tagcatttgg cctagcccgc ccggctcgac tgtgatcgca gaaagccttt ttcttccaga
    26881 cttctatcat ggcgtaaaaa tcaaaaaatt acctgcttta ttgtggtgat aaaattcacg
    26941 ttctacacca gttccagcat cgttacttcc gggcggcagt tcagacgcaa accatacaaa
    27001 ctgcccacgc cacgggttgt gtagatgtgt cgttcgccaa aggcatttaa tccggcgacg
    27061 taacgtttat cttcgacagg ggcaaaaggt tctccaacca acggtacgcg cagttgcccg
    27121 ccgtgagtat ggccgcacag catcagatcc cagggttcat cacgcatgac ttctttgctg
    27181 tcgggattat gtgccagcat cagtcttggc agatttgctt cgctggcggg aggtggtttg
    27241 cattgtccgg cccataagtc accggtgcct accagttcga attgcctgtt cggcgtggcg
    27301 atcaccgtag cctggttaaa caacaccgtg atgcccactg atttcaacgt ctcgccaatt
    27361 aagtgatttt tttctgtacc aacagggcga tcgtggttgc cgaagcaggc aaacgtcggc
    27421 gcacattcgg caagggggga gaggacatca ctaaacgccg aaaaattcag cggcatatca
    27481 aataatacgt aatcgccgcc cagtaatatc aaatcgggct tttgttctat gccaagagca
    27541 atcgcgtcag aaatcaggct taaaggaaca aaacgagagt aatggagatc ggccagaaaa
    27601 agaattttga atggtgctgc gttgtcttta aaaaaggcga ggcggtgacg gattaattca
    27661 aaccagcctg gctcccagta atgcatataa ccgaaacctg agctcgtggc tatcgtcgcg
    27721 gcagtagcct gcaacaatcg gcggcgtgaa atcatcgctc atccctgcaa aaaaaatcgg
    27781 gcagcgtcgt gctgcccgtg tgcatacttt tagtcgatgg tacgcagcag ttcgttaatg
    27841 ccgactttgc cgcgagtttt cgcgtcaact ttcttaacga taaccgcaca gtagaggctg
    27901 tatttgccat cttttgacgg cagattacct gaaacaacca cagaccccgc cggaacgtga
    27961 ccgtagtgga tttcgccggt ttcacggtcg taaatacggg tgctctgacc aatgtatacg
    28021 cccatggaaa tgacggaacc ttcttcgaca atcacccctt caactacttc agagcgtgcg
    28081 ccaatgaagc agttatcttc aatgatggtt gggttagcct gcagcggttc cagcacgccg
    28141 ccgatgccca cgccaccgga aaggtggacg tttttaccaa tctgcgcaca agaaccgacg
    28201 gtcgcccagg tatcaaccat ggtgccttca tcaacatatg cgccgatgtt gacgtaagac
    28261 ggcatcagca cggtgttacg ggcaataaac gcaccctgac gtaccgccgc tggtggcaca
    28321 acgcggaagc cttctttctg gaaacgtgct tcgtcgtagt cggcgaattt cattggcact
    28381 ttgtcgaagt agcggctttc tgccccttcg atcacctgat tatcattaat acggaaagag
    28441 agcagcaccg cttttttcaa ccactgatgc gtcacccact gaccgtcaat tttttccgct
    28501 acacgcagtg caccggaatc cagcagggcg atcacctgat ttaccgcttc gcgggtaacg
    28561 gtgtctgcgt tggttggcgt gatctcggca cggcgttcaa aagcggtttc aataatgttc
    28621 tgtaactgct gcattgttaa actcttttca tatcagtaaa cacatcaccc tttatcgttt
    28681 ggattgaggg cctctgtcaa ccgctgatgc acttcctgct gcaactcgtt attaagcgca
    28741 cgccggtcag cggtggcaat tatgaataaa tcttctactc gctcgccaat ggttgtaatt
    28801 cgggcaccat gaagcgaaat tcccagatcg gcaaaaattt tcccgactct cgccagcagt
    28861 cctggctggt cgagcgcgat aagctcaagg aacgatttgc ggtcggtatg ggtcggcaaa
    28921 aacgttactt cggtttcaac agtaaaatgg cgtaatttgg cgggttggcg acggggctgc
    28981 ggtggctgcc agctactttg cgtcagtact tgctccagac caaaccgaat aacctcatga
    29041 cgatctgcgg acagcgggct gccatcgggt tccagcacga taaaggtatc catcgccata
    29101 ccgtcgcgag tggtgaaaat ttgtgcgtcg tgaacactta aattgcggcg gtctaattcg
    29161 gcacagacgg cggcaaacag ataggggcgg tccgggctcc agataaaaat ctcggtgcct
    29221 ccacgcgtag cctgcgggct aagcaatacc agtggtttgc ttaaatcatg ctgtaataaa
    29281 tggcgggcat gccaggccag ttgatttggg ctatggcgga caaaatagtt agcacgacag
    29341 cgtgaccaaa tttggtgcag cgcctcttcg tcgatgttat ccatgcgcag tagtgccagt
    29401 gcctggagtt ggtgatggcg aacccgttcg cgcatatccg gcgtgttttg cattccgcgt
    29461 cgtagctgct tttcggtggc aaaatagagt tcgcgcaaca gactttgctt ccagctattc
    29521 cacagcgttt cgttggtggc gcaaatgtca gccactgtca ggcataccag atagcgcaga
    29581 cgattttccg tttgaacttc ttcggcaaac tgcttgatga cttcagggtc ctgaatatcg
    29641 cggcgttgtg ctgtcaccga catcagcaag tgctggcgaa ccagccaggc aaccagctgt
    29701 gtttcgcgtg agttcagccc gtggagttct gcaaaatgca ctacatcctg agcaccgaga
    29761 atggagtggt cgccgccgcg tcctttggcg atatcgtgaa acagcgcggc gatgaaaatc
    29821 agctcagttg acggcaggcg cggccagacg tccacacaca acggatggcg ctggcgcgtt
    29881 tcttcactgg caaaactctc cagtttcagc atcacgcgga tagtatgttc atccaccgtg
    29941 taggcgtgga acagatcaaa ctgcatctgc ccgacgatat gcgaccattg cggcatatac
    30001 gcgccgagca cgctatggcg atgcattggc aatagcccgc gccgcaccgc tccggggtga
    30061 cgcagaatgc tcaaaaacag ttttcgtgct tccggaatat tacacagcgg ttgttgcaga
    30121 tggcgacggg catggcgtaa ctggcgcagc gtggtggagt aaatgccggt gatcgcactg
    30181 ttgcgcacca tggtgtagaa catacgcaag atggcttccg gctggcgcat aaatagtgtt
    30241 tcatcacgca ggtcgattag cgtaccgcgt agctgaaact catcgtcgat tggacgtggt
    30301 ttttcgtcgg caggaagggc gaggatggct tcatcgaaca gttgcagcag catctggttg
    30361 agttcactga cgcggcgtgt aacgcggaag taatccttca tcatccgctc gaccggttcg
    30421 ttgccttcac cactgtaatt cagacgctga gcgacgctaa gttggcgatc gaataacagg
    30481 cgattatcgt aacggctgac gaccagatgc agggcaaagc gaatacgcca cagtatatgc
    30541 agacattcgt ttaattccgc ccgctccgct gaggttaaga agccaaaccc aaccatttca
    30601 tccagcgatg ttgcgccaaa atgacggcgg gccacccatt gcagagtgtg gatatcgcgc
    30661 aagccgccag ggctactttt gatgtctggt tcaagattgt agctggtgcc gtggtaacgc
    30721 tgatggcgct ggttctgttc ttcaactttc gccgcgtaga acttgtcgga aggccagaat
    30781 ccttcgctaa aaatatgttt ttgcagttcg aggaagagcg caacatcgcc aattaataag
    30841 cgggattcga ttaaattggt ggcgacggtt aaatccgata acccttccag catgcactct
    30901 tcaagcgtgc gcacactatg accgacttcc agctttacat cccagagcag cgttaacagc
    30961 tcgcccactt tttgcgcctg atcgtccggg agctttttac ggcttaaaat cagtaaatcg
    31021 atgtcagaaa gtggatgcag ctcgccacga ccgtagccac cgacggcgac caatgccagg
    31081 tcggcaatct ggctgaatcc cgcttcaatc cataatcgtt gcaggagctg gtcgataaac
    31141 tcggtgcgcg cctcaatcaa ctgttctgca gagatcccat tgtcaaaggc atcacccagc
    31201 caacgctgga aagtatcgat atgggctttt atcccaccga cggttaattc atcacggggc
    31261 cagacgcatg gattttgcgg ttgaccgggc agggtgggga gagcggtgtt tgcgtactgt
    31321 tctggaaggg tattcattgt gcgccactca taagattaaa ttatcgcatt aaaaaagccg
    31381 gcattcgccg gcttcatctt attcgtcgtg cgagattatc gccgggatgg tgtcatcctt
    31441 gcgtagcgtc agaatttcgc agccgttatc agtcaccaca atagtatgct catattgtgc
    31501 agacaagctg cgatctttgg tttttaccgt ccagccatct ttcatggtgc ggatctcttt
    31561 tttacccgcg ttgaccattg gctcgatggt gaacgtcatc ccaggtttca gtacgacgtt
    31621 ggtttcacgg gagtcatagt gcagcacctg cggttcttca tggaagccgc gaccaatacc
    31681 gtgtccgcaa tattcacgaa cgacggagaa gccttctgct tcgacaaact tctgaatcgc
    31741 cgcaccgatt tcgcgcaggt taatgcctgg tttgaccatg cgcagcgcca ggtacaggct
    31801 ttcttgcgtg atgcggcaca gacgttcgcc catgatggtc ggcttaccga cgataaacat
    31861 tttcgaggta tcgccgtgga aaccatcttt gattacggtg acatcaatgt taacgatatc
    31921 gccatctttc agcagcttcg catcgtccgg gataccgtgg cacaccactt cattaataga
    31981 gatgcaaacg gatttcggat agccgtgata gccgaggcag gcagaaaccg cgtgttgttc
    32041 attaacaatg taatcattac agatgcgatc cagctcgccg gtgctgacgc ccggtttaac
    32101 atacggttcg atcatctcca gcacttcggc agccagtcgg ccagcgacgc gcattttttc
    32161 gatatcttct ggggtcttga ttgagatagc cattaattct gtccatcagc gtcggtgata
    32221 ccgacaatat atatgtaagt gccgtcaatg gtatcacacc cgggcaaatt gagaatcatt
    32281 ctgaatttcg ccaaacgtgc cactgaacgt tttctataat agaaaattca acgtctgatg
    32341 ctgtacacag cgccaacaat tattggtgtc catgacgtat ttgtggtata aagcgcgccg
    32401 gacttccgat ccatttcgta tacacagact ggacggaagc gacaatctca ctttgtgtaa
    32461 caacacacac gtatcggcac atattccggg gtgccctttg gggtcggtaa tatgggatac
    32521 gtggaggcat aaccccaact tttatataga ggttttaatc atggcaactg tttccatgcg
    32581 cgacatgctc aaggctggtg ttcacttcgg tcaccagacc cgttactgga acccgaaaat
    32641 gaagccgttc atcttcggtg cgcgtaacaa agttcacatc atcaaccttg agaaaactgt
    32701 accgatgttc aacgaagctc tggctgaact gaacaagatt gcttctcgca aaggtaaaat
    32761 ccttttcgtt ggtactaaac gcgctgcaag cgaagcggtg aaagacgctg ctctgagctg
    32821 cgaccagttc ttcgtgaacc atcgctggct gggcggtatg ctgactaact ggaaaaccgt
    32881 tcgtcagtcc atcaaacgtc tgaaagacct ggaaactcag tctcaggacg gtactttcga
    32941 aaagctgacc aagaaagaag cgctgatgcg cactcgtgag ctggagaaac tggaaaacag
    33001 cctgggcggt atcaaagaca tgggcggtct gccggacgct ctgtttgtaa tcgatgctga
    33061 ccacgaacac attgctatca aagaagcaaa caacctgggt attccggtat ttgctatcgt
    33121 tgataccaac tctgatccgg acggtgttga cttcgttatc ccgggtaacg acgacgcaat
    33181 ccgtgctgtg accctgtacc tgggcgctgt agctgcaacc gtacgtgaag gccgttctca
    33241 ggatctggct tcccaggcgg aagaaagctt cgtagaagct gagtaataag gcttgataac
    33301 tcccccaaaa tagttcgagt tgcagaaagg cggcaagctc gagaattccc gggagcttac
    33361 atcagtaagt gaccgggatg agcgagcgaa gataacgcat ctgcggcgcg aaatatgaag
    33421 ggggagagcc cttatagacc aggtagtaca cgtttggtta gggggcctgc atatggcccc
    33481 ctttttcact tttatatctg tgcggtttaa tgccgggcag atcacatctc cgaggatttt
    33541 agaatggctg aaattaccgc atccctggta aaagagctgc gtgagcgtac tggcgcaggc
    33601 atgatggatt gcaaaaaagc actgactgaa gctaacggcg acatcgagct ggcaatcgaa
    33661 aacatgcgta agtccggtgc tattaaagca gcgaaaaaag caggcaacgt tgctgctgac
    33721 ggcgtgatca aaaccaaaat cgacggcaac tacggcatca ttctggaagt taactgccag
    33781 actgacttcg ttgcaaaaga cgctggtttc caggcgttcg cagacaaagt tctggacgca
    33841 gctgttgctg gcaaaatcac tgacgttgaa gttctgaaag cacagttcga agaagaacgt
    33901 gttgcgctgg tagcgaaaat tggtgaaaac atcaacattc gccgcgttgc tgcgctggaa
    33961 ggcgacgttc tgggttctta tcagcacggt gcgcgtatcg gcgttctggt tgctgctaaa
    34021 ggcgctgacg aagagctggt taaacacatc gctatgcacg ttgctgcaag caagccagaa
    34081 ttcatcaaac cagaagacgt atccgctgaa gtggtagaaa aagaatacca ggtacagctg
    34141 gatatagcga tgcagtctgg taagccgaaa gaaatcgcag agaaaatggt tgaaggccgc
    34201 atgaagaaat tcaccggcga agtttctctg accggtcagc cgttcgttat ggaaccaagc
    34261 aaaactgttg gtcagctgct gaaagagcat aacgctgaag tgactggctt catccgcttc
    34321 gaagtgggtg aaggcatcga gaaagttgag actgactttg cagcagaagt tgctgcgatg
    34381 tccaagcagt cttaattatc aaaaaggagc cgcctgaggg cggcttcttt ttgtgcccat
    34441 cttgtaaatt cagctaaccc ttgtggggct gcgctgaaaa gcgacgtaca atgtcgctag
    34501 tattaattca tttcaatcgt tgacagtctc aggaaagaaa catggctacc aatgcaaaac
    34561 ccgtctataa acgcattctg cttaagttga gtggcgaagc tctgcagggc actgaaggct
    34621 tcggtattga tgcaagcata ctggatcgta tggctcagga aatcaaagaa ctggttgaac
    34681 tgggtattca ggttggtgtg gtgattggtg ggggtaacct gttccgtggc gctggtctgg
    34741 cgaaagcggg tatgaaccgc gttgtgggcg accacatggg gatgctggcg accgtaatga
    34801 acggcctggc aatgcgtgat gcactgcacc gcgcctatgt gaacgctcgt ctgatgtccg
    34861 ctattccatt gaatggcgtg tgcgacagct acagctgggc agaagctatc agcctgttgc
    34921 gcaacaaccg tgtggtgatc ctctccgccg gtacaggtaa cccgttcttt accaccgact
    34981 cagcagcttg cctgcgtggt atcgaaattg aagccgatgt ggtgctgaaa gcaaccaaag
    35041 ttgacggcgt gtttaccgct gatccggcga aagatccaac cgcaaccatg tacgagcaac
    35101 tgacttacag cgaagtgctg gaaaaagagc tgaaagtcat ggacctggcg gccttcacgc
    35161 tggctcgtga ccataaatta ccgattcgtg ttttcaatat gaacaaaccg ggtgcgctgc
    35221 gccgtgtggt aatgggtgaa aaagaaggga ctttaatcac ggaataattc ccgtgatgga
    35281 taaataaggg taagattccg cgtaagtatc gcgggggcgt aagtctggtt ataaggcgtt
    35341 attgttgcag gcagtttggt cacggccagc gcgcagcaac cggagcgtac aaaagtacgt
    35401 gaggatggcg agcactgctc ggggccaaaa tggcaaataa aatagcctaa taatccagac
    35461 gattacccgt aatatgttta atcagggcta tacttagcac acttccactg tgtgtgactg
    35521 tctggtctga ctgagacaag ttttcaagga ttcgtaacgt gattagcgat atcagaaaag
    35581 atgctgaagt acgcatggac aaatgcgtag aagcgttcaa aacccaaatc agcaaaatac
    35641 gcacgggtcg tgcttctccc agcctgctgg atggcattgt cgtagaatat tacggcacgc
    35701 cgacgccgct gcgtcagctg gcaagcgtaa cggtagaaga ttcccgtact ctgaaaatca
    35761 acgtgtttga tcgttcaatg tctccggccg ttgaaaaagc gattatggcg tccgatcttg
    35821 gcctgaaccc gaactctgcg ggtagcgaca tccgtgttcc gctgccgccg ctgacggaag
    35881 aacgtcgtaa agatctgacc aaaatcgttc gtggtgaagc agaacaagcg cgtgttgcag
    35941 tacgtaacgt gcgtcgtgac gcgaacgaca aagtgaaagc actgttgaaa gataaagaga
    36001 tcagcgaaga cgacgatcgc cgttctcagg acgatgtaca gaaactgact gatgctgcaa
    36061 tcaagaaaat tgaagcggcg ctggcagaca aagaagcaga actgatgcag ttctgatttc
    36121 ttgaacgaca aaaacgccgc tcagtagatc cttgcggatc ggctggcggc gttttgcttt
    36181 ttattctgtc tcaactctgg atgtttcatg aagcaactca ccattctggg ctcgaccggc
    36241 tcgattggtt gcagcacgct ggacgtggtg cgccataatc ccgaacactt ccgcgtagtt
    36301 gcgctggtgg caggcaaaaa tgtcactcgc atggtagaac agtgcctgga attctctccc
    36361 cgctatgccg taatggacga tgaagcgagt gcgaaacttc ttaaaacgat gctacagcaa
    36421 cagggtagcc gcaccgaagt cttaagtggg caacaagccg cttgcgatat ggcagcgctt
    36481 gaggatgttg atcaggtgat ggcagccatt gttggcgctg ctgggctgtt acctacgctt
    36541 gctgcgatcc gcgcgggtaa aaccattttg ctggccaata aagaatcact ggttacctgc
    36601 ggacgtctgt ttatggacgc cgtaaagcag agcaaagcgc aattgttacc ggtcgatagc
    36661 gaacataacg ccatttttca gagtttaccg caacctatcc agcataatct gggatacgct
    36721 gaccttgagc aaaatggcgt ggtgtccatt ttacttaccg ggtctggtgg ccctttccgt
    36781 gagacgccat tgcgcgattt ggcaacaatg acgccggatc aagcctgccg tcatccgaac
    36841 tggtcgatgg ggcgtaaaat ttctgtcgat tcggctacca tgatgaacaa aggtctggaa
    36901 tacattgaag cgcgttggct atttaacgcc agcgccagcc agatggaagt gctgattcac
    36961 ccgcagtcag tgattcactc aatggtgcgc tatcaggacg gcagtgttct ggcgcagctg
    37021 ggggaaccgg atatgcgtac gccaattgcc cacaccatgg catggccgaa tcgcgtgaac
    37081 tctggcgtga agccgctcga tttttgcaaa ctaagtgcgt tgacatttgc cgcaccggat
    37141 tatgatcgtt atccatgcct gaaactggcg atggaggcgt tcgaacaagg tcaggcagcg
    37201 acgacagcat tgaatgccgc aaacgaaatc accgttgctg cttttcttgc gcaacaaatc
    37261 cgctttacgg atatcgctgc gttgaattta tcggtactgg aaaaaatgga tatgcgcgaa
    37321 ccacaatgtg tggacgatgt gttatctgtt gatgcgaacg cgcgtgaagt cgccagaaaa
    37381 gaggtgatgc gtctcgcaag ctgaggataa tccggctaca gagagtctcg ctatttgtta
    37441 gcgtagggct tcagtgatat agtctgcgcc atctgatcgt aagtagttgg ctttataagg
    37501 tcaggtatgc cgtggttttg cacggctttt tttgtatagg cttcagtatt cctgagtacc
    37561 gtaaaccctg tcagggaata aaaaacgcgt gatgttgtct gctactcaac cacttagcga
    37621 aaaattgcca gcgcatggct gccgtcatgt tgcgatcatt atggacggca atggtcgctg
    37681 ggcaaaaaag caagggaaga ttcgtgcctt tgggcataaa gccggggcaa aatccgtccg
    37741 ccgggctgtc tcttttgcgg ccaacaacgg tattgaggcg ttaacgctgt atgcctttag
    37801 tagtgaaaac tggaaccgac cagcgcagga agtcagtgcg ttaatggaac tgtttgtgtg
    37861 ggcgctcgat agcgaagtaa aaagtctgca ccgacataac gtgcgtctgc gtattattgg
    37921 cgataccagt cgctttaact cgcgtttgca agaatgtatt cgtaaatctg aagcgctaac
    37981 agccgggaat accggtctga cgctgaatat tgcggcgaac tacggtggac gttgggatat
    38041 agtccaggga gtcaggcaac tggctgaaaa ggtgcagcaa ggaaacctgc aaccagatca
    38101 gatagatgaa gagatgctaa accagcatgt ctgtatgcat gaactggccc ctgtagattt
    38161 agtaattagg actggggggg agcatcgcat tagtaacttt ttgctttggc aaattgccta
    38221 tgccgaactt tactttatag atgttctctg gcccgatttc gatgaacaag actttgaagg
    38281 ggcgttaaat gcctttgcta atcgagagcg tcgtttcggc ggcaccggcc cggtgatgaa
    38341 acagcctgat ggggggcgct tttgctgaag tatcgcctga tatctgcttt tgtgttaata
    38401 cccgtcgtca tcgcggcgtt gtttctgttg ccgccggtgg ggttcgccat tgtaacgctg
    38461 gtggtctgca tgctggcagc gtgggaatgg ggacagctta gcggttttac cactcgttcg
    38521 cagcgagtat ggttggcggt gttatgcggg ttattgttgg cgctgatgct ttttctgttg
    38581 ccggaatatc accgaaatat tcatcaaccg ctggttgaaa tctcactttg ggcttcgctg
    38641 ggttggtgga ttgtctcgct attgctggtg ctgttttacc caggttccgc agcaatctgg
    38701 cgtaactcta aaacattgcg ccttattttt ggcgtgctaa ccattgttcc cttcttctgg
    38761 ggcatgctgg cgttacgggc ctggcactat gacgagaatc attacagtgg cgcaatatgg
    38821 ctgctctatg tcatgatcct ggtatggggc gctgactccg gcgcatatat gtttggcaaa
    38881 ttgtttggta aacataagct ggcaccgaag gtttctccgg gtaaaacctg gcaaggcttt
    38941 ataggtggac tcgctactgc agcggtaatc tcatggggtt atggcatgtg ggcgaatctc
    39001 gacgtcgctc ccgtcacctt actcatttgc tctattgtcg cagcgttagc ctcagtgctc
    39061 ggcgatctga ccgagagtat gtttaagcgt gaagcaggaa ttaaggacag cggtcattta
    39121 attccaggac acggtggtat tttagatcgt attgatagcc tgacggctgc ggtaccggtc
    39181 tttgcttgct tgttgttact ggtattcagg acgctttaac ggaaggtaat atgctgagtt
    39241 ttctctggga tttggcttcg ttcatcgttg cactgggtgt acttatcact gtgcatgaat
    39301 ttggtcattt ctgggttgcc cggcgttgtg gtgttcgcgt tgagcgtttc tcaatagggt
    39361 ttggtaaggc gctctggcgg cgaactgata agctcggcac cgaatatgtt atcgccctga
    39421 tcccgctggg cggttatgtc aaaatgctgg atgagcgcgc agaaccggtc gttccggaac
    39481 tccgccacca tgccttcaat aataaatctg ttggccaacg agcggcgatt attgccgcag
    39541 gtccggttgc aaacttcatt tttgctatct ttgcctactg gctggttttt attattggtg
    39601 tgcctggcgt acgtccggtg gttggtgaaa tagcagccaa ttcgatagct gcggaagcac
    39661 aaattgcacc aggtacggaa ctaaaagccg tagatggtat cgaaacgcct gattgggatg
    39721 ccgtgcgttt gcagttggtc gataaaattg gcgatgaaag caccaccatt acagtagcgc
    39781 catttggcag cgaccaacgg cgggatgtaa agctcgattt acgtcactgg gcgtttgagc
    39841 ctgataaaga agatccggta tcttcgctgg ggattcgtcc tcgtgggctg caaattgaac
    39901 ctgtactgga aaatgtgcag ccaaactcgg cggcaagcaa ggcaggtttg caagcaggcg
    39961 acaggatcgt taaagtcgat ggtcagccct taacgcagtg ggtgaccttt gtgatgcttg
    40021 tccgggataa cccggggaaa tccttagcgt tagaaatcga aaggcaggga agtctcttgt
    40081 ctttgacatt aatcccggag agtaaaccgg gtaatggtaa agcgattggt tttgtcggta
    40141 ttgagccgaa agtcattcct ttgccagatg agtataaagt tgtacgccag tatgggccgt
    40201 tcaacgccat cgtcgaagcc acggacaaaa cgtggcagct gatgaagctg acggtcagta
    40261 tgctgggaaa attgatcacc ggtgatgtga aactgaacaa cctcagtggg ccgatctcta
    40321 tcgccaaggg ggctgggatg acagcggaac tcggggtagt ttattacctg ccgtttcttg
    40381 cgcttattag cgtgaactta gggataatta acctgtttcc gttgcccgta cttgacgggg
    40441 cgcatctgct gttccttgcg atcgaaaaga tcaagggcgg accggtatcc gagcgggttc
    40501 aagacttttg ttatcgcatt ggctcgattc tgctggtgct gttaatgggg cttgcacttt
    40561 tcaatgattt ctctcggtta tgagagttag ttaggaagaa cgcataataa cgatggcgat
    40621 gaaaaagttg ctcatagcgt cgctgctgtt tagcagcgcc accgtatacg gtgctgaagg
    40681 gttcgtagtg aaagatattc atttcgaagg ccttcagcgt gtcgccgttg gtgcggccct
    40741 cctcagtatg ccggtgcgta caggcgacac ggttaatgat gaagatatca gtaataccat
    40801 tcgcgctctg tttgctaccg gcaactttga ggatgttcgc gtccttcgtg atggtgatac
    40861 ccttctggtt caggtaaaag aacgtccgac cattgccagc attactttct ccggtaacaa
    40921 atcggtgaaa gatgacatgc tgaagcaaaa cctcgaggct tctggtgtgc gtgtgggcga
    40981 atccctcgat cgcaccacca ttgccgatat cgagaaaggt ctggaagact tctactacag
    41041 cgtcggtaaa tatagcgcca gcgtaaaagc tgtcgtgacc ccgctgccgc gcaaccgtgt
    41101 tgacctaaaa ctggtgttcc aggaaggtgt gtcagctgaa atccagcaaa ttaacattgt
    41161 tggtaaccat gctttcacca ccgacgaact gatctctcat ttccaactgc gtgacgaagt
    41221 gccgtggtgg aacgtggtag gcgatcgtaa ataccagaaa cagaaactgg cgggcgacct
    41281 tgaaaccctg cgcagctact atctggatcg cggttatgcc cgtttcaaca tcgactctac
    41341 ccaggtcagt ctgacgccag ataaaaaagg tatttacgtc acggtgaaca ttaccgaagg
    41401 cgatcagtac aagctttctg gcgttgaagt gagcggcaac cttgccgggc actccgctga
    41461 aattgagcag ctgactaaga tcgagccggg cgagctgtat aacggcacca aagtgaccaa
    41521 gatggaagat gacatcaaaa agcttctcgg tcgctatggt tatgcctatc cgcgcgtaca
    41581 gtcgatgcct gaaattaacg atgccgacaa aaccgttaaa ttacgcgtga acgttgatgc
    41641 gggtaaccgt ttctacgtgc gtaagatccg ttttgaaggt aacgatacct cgaaagatgc
    41701 cgtcctgcgt cgcgaaatgc gtcagatgga aggtgcatgg ctgggaagcg atctggtcga
    41761 tcagggtaag gagcgtctga atcgtctggg cttctttgaa actgtcgata ccgataccca
    41821 acgtgttccg ggtagcccgg accaagtaga tgtagtctac aaggtgaaag aacgtaacac
    41881 cggtagcttc aacttcggga ttggttacgg tactgaaagt ggcgtgagct tccaggctgg
    41941 cgtgcaacag gataactggt taggtacagg ttatgctgtt ggtatcaacg ggaccaaaaa
    42001 cgattaccag acctatgctg aattgtcggt aaccaacccg tacttcactg tagatggtgt
    42061 aagcctcggt ggtcgtctct tctataatga cttccaggca gatgacgccg acctgtccga
    42121 ctataccaac aagagttatg gtacagacgt gacgttgggc ttcccgatca acgaatataa
    42181 ctcgctgcgt gcaggtctgg gttatgtaca taactccctg tccaacatgc agcctcaggt
    42241 tgcgatgtgg cgttatctgt actctatggg tgaacatccg agcacctctg atcaggataa
    42301 cagcttcaaa acggacgact tcacgttcaa ctatggttgg acctataaca agcttgaccg
    42361 tggttacttc ccgacagatg gttcacgtgt caacctgacc ggtaaagtga ccattcctgg
    42421 atcggataac gaatactaca aagtgacgtt agacacggcg acttatgtgc cgatcgatga
    42481 cgatcacaaa tgggttgttc tggggcgtac ccgctggggt tatggtgatg gtttaggcgg
    42541 caaagagatg ccgttctacg agaacttcta tgccggtggt tccagcaccg tccgtggctt
    42601 ccagtccaat accattggtc cgaaagcagt ttacttcccg catcaggcca gtaattatga
    42661 tccggactat gattacgaat gtgcgactca ggacggcgcg aaagacctgt gtaaatcgga
    42721 tgatgctgta ggcggtaacg ccatggcggt tgccagcctc gagttcatca ccccgacgcc
    42781 gtttattagc gataagtatg ctaactcggt tcgtacttcc ttcttctggg atatgggtac
    42841 cgtttgggat acaaactggg attccagcca atattctgga tatccggact atagtgatcc
    42901 aagcaatatc cgtatgtctg cgggtatcgc attacaatgg atgtccccat tggggccgtt
    42961 ggtgttctcc tacgcccagc cgttcaaaaa gtacgatgga gacaaggcag aacagttcca
    43021 gtttaacatc ggtaaaacct ggtaagtgtt ctccacaaag gaatgtagtg gtagtgtagc
    43081 gatgacttta ggcgatcaat ataagatcgc cgggccacgc aaagaactgc accctccggt
    43141 gcaaatggga tggtaaggag tttattgtga aaaagtggtt attagcggca ggtctcggtt
    43201 tagcactggc aacttctgct caggcggctg acaaaattgc aatcgtcaat atgggcagcc
    43261 tgttccagca ggtagcgcag aaaaccggtg tttctaacac gctggaaaat gagttcaaag
    43321 gccgtgccag cgaactgcag cgtatggaaa ccgatctgca ggctaaaatg aaaaagctgc
    43381 agtccatgaa agcgggcagc gatcgcacta agctggaaaa agacgtgatg gctcagcgcc
    43441 agacttttgc tcagaaagcg caggcttttg agcaggatcg cgcacgtcgt tccaacgaag
    43501 aacgcggcaa actggttact cgtatccaga ctgctgtgaa atccgttgcc aacagccagg
    43561 atatcgatct ggttgttgat gcaaacgccg ttgcttacaa cagcagcgat gtaaaagaca
    43621 tcactgccga cgtactgaaa caggttaaat aagtaatgcc ttcaattcga ctggctgatt
    43681 tagcgcagca gttggatgca gaactacacg gtgatggcga tatcgtcatc accggcgttg
    43741 cgtccatgca atctgcacaa acaggtcaca ttacgttcat ggttaaccca aaataccgtg
    43801 agcatttagg cttgtgccag gcgtccgcgg ttgtcatgac ccaggacgat cttcctttcg
    43861 cgaaaagtgc cgcgctggta gtgaagaatc cctacctgac ttacgcgcgc atggcgcaaa
    43921 ttttagatac cacgccgcag cccgcgcaga acattgcacc cagtgcggtg atcgacgcga
    43981 cggcgaagct ggggaacaat gtatcgattg gcgctaacgc ggtgattgaa tccggcgttg
    44041 aactgggcga taacgtgatt atcggtgccg gttgcttcgt aggtaaaaac agcaaaatcg
    44101 gtgcaggttc gcgtctctgg gcgaacgtaa ccatttacca tgagatccag atcggtcaga
    44161 attgcctgat ccagtccgga acagtggtag gcgcagacgg ctttggttat gccaacgatc
    44221 gtggtaactg ggttaagatc ccacagattg gtcgcgtaat tattggcgat cgcgtggaga
    44281 tcggtgcctg cactaccatc gatcgcggcg cactggatga cactgttatt ggcaatggcg
    44341 tgatcattga taaccagtgc cagattgcac ataacgtcgt gattggcgac aatacggcgg
    44401 ttgccggtgg cgtcattatg gcgggcagcc tgaaaattgg tcgttactgc atgatcggcg
    44461 gagccagcgt aatcaacggg catatggaaa tatgcgacaa agtgacggtt acgggcatgg
    44521 gtatggtgat gcgtcccatc actgaaccag gcgtctattc ctcaggcatt ccgctgcaac
    44581 ccaacaaagt ctggcgcaaa accgctgcac tggtgatgaa cattgatgac atgagcaagc
    44641 gtctgaaatc gcttgagcgc aaggttaatc aacaagacta acgttccatc ttttgttcgc
    44701 caaactttac ggcctgtctc attcttacga ttgcggcagg ccgtgttatt attgtcgttt
    44761 cttatatttt gacaggaaga gtatcttgac tactaacact catactctgc agattgaaga
    44821 gattttagaa cttctgccgc accgtttccc gttcttactg gtggatcgcg tgctggattt
    44881 tgaagaaggt cgttttctgc gcgcagtaaa aaatgtctct gtcaatgagc cattcttcca
    44941 gggccatttc cctggaaaac cgattttccc gggtgtgctg attctggaag caatggcaca
    45001 ggcaacaggt attctggcgt ttaaaagcgt aggaaaactg gaaccgggtg agctgtacta
    45061 cttcgctggt attgacgaag cgcgcttcaa gcgcccggtc gtgcctggcg atcaaatgat
    45121 catggaagtc actttcgaaa aaacgcgccg cggcctgacc cgttttaaag gggttgctct
    45181 ggtcgatggt aaagtagttt gcgaagcaac gatgatgtgt gctcgtagcc gggaggcctg
    45241 atacgtgatt gataaatccg cctttgtgca tccaaccgcc attgtggaag agggcgcgtc
    45301 aattggcgcg aacgcacaca ttggtccttt ttgtatcgtt ggaccccatg tcggaattgg
    45361 tgagggtacc gtactgaaat ctcacgttgt cgtgaatggt catactaaaa ttggccgcga
    45421 taatgagatt tatcagttcg cctccatcgg cgaagttaac caggatctga aatatgctgg
    45481 cgaaccgacc cgtgtggaaa tcggcgatcg taaccgcatt cgcgaaagcg tcaccattca
    45541 tcgtggcaca gtccagggcg gtggattgac gaaggtgggc agcgacaact tactgatgat
    45601 caacgcgcac attgcgcacg attgtacggt aggtaaccgc tgtattctcg ccaacaacgc
    45661 aacgctggcg ggtcacgtat cggttgacga cttcgcgatc atcggcggca tgaccgcagt
    45721 ccatcagttc tgcatcattg gtgcgcacgt gatggttggc ggctgctccg gtgtggcgca
    45781 ggacgtccct ccttatgtca ttgcgcaggg taaccacgca acgccgttcg gtgtcaatat
    45841 cgaagggctg aagcgccgcg gattcagccg tgaggcgatt accgctatcc gcaatgcgta
    45901 taagctgatt tatcgtagcg gtaaaacgct cgatgaagtg aaaccggaaa ttgctgaact
    45961 ggcggaaaca tatccggaag tgaaagcctt taccgatttc ttttcacgct caacgcgcgg
    46021 tctgattcgt taatgactga acagcgtcca ttaacgattg ccctggtcgc cggagaaacc
    46081 tccggcgata tcctaggggc cggtttaatc cgcgctctga aagaacgtgt gcccaacgcc
    46141 cgctttgttg gtgttgccgg gccacgaatg caggctgaag gctgcgaagc ctggtacgaa
    46201 atggaagaac tggcggtgat gggcattgtt gaagtgctcg gtcgtctgcg tcgcttactg
    46261 catattcgtg ccgatctgac aaagcgtttt ggcgaactga agccagatgt ttttgttggt
    46321 attgatgcgc ctgacttcaa tattactctt gaaggtaacc tcaaaaagca gggtatcaaa
    46381 accattcatt acgtcagtcc gtcagtctgg gcgtggcgac agaaacgtgt tttcaaaata
    46441 ggcagagcca ccgatctggt gctcgcattt ctgcctttcg aaaaagcgtt ttatgacaaa
    46501 tacaacgtac cgtgccgctt tatcggtcat accatggctg atgccatgcc attagatcca
    46561 gataaaaatg ccgcccgtga tgtgctgggg atccctcacg atgcccactg cctggcgttg
    46621 ctaccgggga gccgtggtgc agaagttgaa atgcttagtg ccgatttcct gaaaacggcc
    46681 cagcttttgc gccagacata tccggatctc gaaatcgtgg tgccactggt gaatgccaaa
    46741 cgccgcgagc agtttgaacg catcaaagct gaagtcgcgc cagacttttc agttcatttg
    46801 ctggatggga tgggccgtga ggcgatggtc gccagcgatg cggcgctact ggcgtcgggt
    46861 acggcagccc tggagtgtat gctggtgaaa tgcccgatgg tggtgggata tcgcatgaag
    46921 ccttttacct tctggttggc gaagcggctg gtgaaaactg attatgtctc gctgccaaat
    46981 ctgctggcgg gcagagagtt agtcaaagag ttattgcagg aagagtgtga gccgcaaaaa
    47041 ctggctgcgg cgctgttacc gctgttggcg aacgggaaaa tcagccacgc gatgcacgat
    47101 accttccgtg aactgcatca gcagatccgt tgcaatgccg atgagcaggc ggcacaagcc
    47161 gttctggagt tagcacaatg atcgaatttg tttatccgca cacgcagctg gttgcgggtg
    47221 tggatgaagt cggacgcggg ccgttagttg gcgcggtcgt caccgctgcg gtgatccttg
    47281 acccggcgcg cccgattgcc gggctgaatg attccaaaaa gctgagcgaa aaacgccgtc
    47341 tggcgctctg tgaagagatc aaagagaaag cgttgagctg gagtctgggc cgcgcggaac
    47401 cccacgaaat cgacgagctg aacattcttc atgcgaccat gctggcgatg cagcgtgccg
    47461 tcgctgggct gcatattgcg ccggaatatg tgttgattga tggtaaccgc tgcccgaaat
    47521 taccgatgcc tgcgatggtt gtggtgaaag gcgatagccg cgtaccggaa atcagtgccg
    47581 cgtctatcct ggcgaaagtg acgcgtgacg ccgaaatggc ggcgctggat attgttttcc
    47641 cgcaatatgg ttttgcccaa cacaaagggt acccaaccgc ttttcatctg gaaaaactgg
    47701 ctgaacacgg cgcgaccgaa caccatcggc gcagctttgg gcctgtcaaa cgcgcactgg
    47761 gacttgcgtc ctgattcttg tgtcgagatt aagtaaaccg gaatctgaag atgtctgaac
    47821 cacgtttcgt acacctgcgg gtgcacagcg actactcgat gatcgatggc ctggccaaaa
    47881 ctgcaccgtt ggtaaaaaag gcggcggcgt tgggtatgcc agcactggcg atcaccgatt
    47941 tcaccaacct ttgtggtctg gtgaagttct acggagcggg acatggcgca gggattaagc
    48001 ctatcgtcgg ggcagatttt aacgtccagt gcgacctgct gggtgatgag ttaacccacc
    48061 tgacggtact ggcggcgaac aataccggct atcagaatct gacgttgctg atctcaaaag
    48121 cgtatcagcg cgggtacggt gccgctgggc cgatcatcga tcgcgactgg cttatcgaat
    48181 taaatgaagg gttgatcctt ctttccggcg ggcgcatggg cgacgtcgga cgcagtcttt
    48241 tgcgtggtaa cagcgcgctg gtagatgagt gtgtcgcgtt ttatgaagaa cacttcccgg
    48301 atcgctattt tctcgagctg atccgcaccg gcaggccgga tgaagaaagc tatctgcacg
    48361 cggcggtgga actggcggaa gcgcgcggtt tgcccgtcgt ggcgactaac gatgtgcgct
    48421 ttatcgacag cagcgacttt gacgcacacg aaatccgcgt cgcgatccac gacggcttta
    48481 ccctcgacga tcctaaacgc ccgcgtaact attcgccgca gcaatatatg cgtagcgaag
    48541 aggagatgtg tgagctgttt gccgacatcc ccgaagccct tgccaacacc gttgagatcg
    48601 ccaaacgctg taacgtaact gtgcgtcttg gtgaatactt cctgccgcag ttcccgaccg
    48661 gggacatgag caccgaagat tatctggtca agcgtgcaaa agagggcctg gaagagcgtc
    48721 tggccttttt attccctgac gaggaagaac gtgttaagcg ccgcccggaa tatgacgaac
    48781 gtctggagac tgaacttcag gttatcaacc agatgggctt cccgggctac ttcctcatcg
    48841 ttatggaatt tatccagtgg tcgaaagata acggcgtacc ggtagggcca ggccgtggct
    48901 ccggtgcggg ttcactggtg gcctacgcgc tgaaaatcac cgacctcgat ccgctggaat
    48961 ttgacctgct gttcgaacgt ttccttaacc cggaacgtgt ctccatgcct gacttcgacg
    49021 ttgacttctg tatggagaaa cgcgatcagg ttatcgagca cgtagcggac atgtacggtc
    49081 gtgatgcggt atcgcagatc atcaccttcg gtacaatggc ggcgaaagcg gtgatccgcg
    49141 acgtaggccg cgtgctgggg catccgtacg gctttgtcga tcgtatctcg aaactgatcc
    49201 cgcccgatcc ggggatgacg ctggcgaaag cgtttgaagc cgagccgcag ctgccggaaa
    49261 tctacgaagc ggatgaagaa gttaaggcgc tgatcgacat ggcgcgcaaa ctggaagggg
    49321 tcacccgtaa cgccggtaag cacgccggtg gggtggttat cgcgccgacc aaaattaccg
    49381 attttgcgcc gctttactgc gatgaagagg gcaaacatcc ggtcacccag tttgataaaa
    49441 gcgacgttga atacgccgga ctggtgaagt tcgacttcct tggtttgcgt acgctcacca
    49501 tcatcaactg ggcgctggag atgatcaaca agcggcgggc gaagaatggc gagccgccgc
    49561 tggatatcgc cgcgatcccg ctggatgaca agaaaagctt cgacatgctg caacgctcgg
    49621 aaaccacggc ggtattccag cttgaatcgc gcggcatgaa ggatctgatc aagcgtctgc
    49681 aacctgactg cttcgaagat atgatcgcac tggtggcgct gttccgccca ggtccgttgc
    49741 aatcagggat ggtggataac tttatcgacc gtaaacatgg tcgcgaagaa atctcctatc
    49801 cggacgtaca gtggcagcat gaaagcctga aaccggtact ggagccaacc tacggcatca
    49861 tcctgtatca ggaacaggtc atgcagattg cgcaggtgct ttctggttat accctcggtg
    49921 gcgcggatat gctgcgtcgt gcgatgggta agaaaaagcc ggaagagatg gctaagcagc
    49981 gttctgtatt tgctgaaggt gcagaaaaga acggagtcaa cgccgaactg gcgatgaaaa
    50041 tcttcgacct ggtggagaaa ttcgcgggtt acggatttaa caaatcgcac tctgcggcct
    50101 atgctttggt gtcatatcaa acgttatggc tgaaagcgca ctatccggcg gagtttatgg
    50161 cggcggtaat gaccgccgat atggacaaca ccgagaaggt ggtgggcctg gtggatgagt
    50221 gctggcggat ggggctgaaa atcctgccac cagatataaa ctccggtctt taccatttcc
    50281 acgtcaacga cgacggcgaa atcgtgtatg gtattggcgc catcaaaggg gtaggtgaag
    50341 gtccgattga ggccatcatc gaagcccgta ataaaggcgg ctacttccgc gaactgtttg
    50401 atctctgcgc ccgtaccgac accaaaaagt taaaccggcg ggtgctggaa aaactgatca
    50461 tgtccggggc gtttgaccgt cttgggccac accgcgcggc gctgatgaac tcgctgggtg
    50521 atgcgttaaa agcggcagat caacacgcga aagcggaagc tatcggtcag gccgatatgt
    50581 tcggcgtgct ggccgaagag ccggaacaaa ttgaacaatc ctacgccagc tgccaaccgt
    50641 ggccggagca ggtggtgtta gatggggaac gtgaaacgtt aggtctgtac cttacgggac
    50701 accctatcaa ccagtattta aaagagattg agcgttatgt cggaggcgta aggctgaaag
    50761 acatgcaccc gacagaacgt ggtaaagtca tcacggctgc ggggctcgtt gttgccgcgc
    50821 gggttatggt caccaagcgc ggcaatcgta tcggtatctg cacgctggat gaccgttccg
    50881 ggcggctgga agtgatgttg tttactgacg ccctggataa ataccagcaa ttgctggaaa
    50941 aagaccgcat acttatcgtc agcggacagg tcagctttga tgacttcagc ggtgggctta
    51001 aaatgaccgc tcgcgaagtg atggatattg acgaagcccg ggaaaaatat gctagcgggc
    51061 ttgctatctc gctgacggac aggcaaattg atgaccagct tttaaaccga ctccgtcagt
    51121 ctctggaacc ccaccgctct gggacaattc cagtacatct ctactatcag agggcggatg
    51181 cacgcgcgcg gttgcgtttt ggcgcgacgt ggcgtgtctc tccgagcgat cgtttattaa
    51241 acgatctccg tggcctcatt ggttcggagc aggtggaact ggagtttgac taatacagga
    51301 atactatgag tctgaatttc cttgattttg aacagccgat tgcagagctg gaagcgaaaa
    51361 tcgattctct gactgcggtt agccgtcagg atgagaaact ggatattaac atcgatgaag
    51421 aagtgcatcg tctgcgtgaa aaaagcgtag aactgacacg taaaatcttc gccgatctcg
    51481 gtgcatggca gattgcgcaa ctggcacgcc atccacagcg tccttatacc ctggattacg
    51541 ttcgcctggc atttgatgaa tttgacgaac tggctggcga ccgcgcgtat gcagacgata
    51601 aagctatcgt cggtggtatc gcccgtcttg acggtcgtcc ggtgatgatc attggtcatc
    51661 aaaaaggtcg tgaaaccaaa gaaaaaattc gccgtaactt tggtatgcca gcgccagaag
    51721 gttaccgcaa agcactgcgt ctgatgcaaa tggctgaacg ctttaagatg cctatcatca
    51781 cctttatcga caccccgggg gcttatcctg gcgtgggcgc agaagagcgt ggtcagtctg
    51841 aagccattgc acgcaacctg cgtgaaatgt ctcgcctcgg cgtaccggta gtttgtacgg
    51901 ttatcggtga aggtggttct ggcggtgcgc tggcgattgg cgtgggcgat aaagtgaata
    51961 tgctgcaata cagctcctat tccgttatct cgccggaagg ttgtgcgtcc attctgtgga
    52021 agagcgccga caaagcgccg ctggcggctg aagcgatggg tatcatcgct ccgcgtctga
    52081 aagagctgaa actgatcgac tccatcatcc cggaaccgct gggcggcgct caccgtaacc
    52141 cggaagcgat ggcggcatcg ttgaaagcgc aactgctggc ggatctggcc gatctcgatg
    52201 tgttaagcac tgaagattta aaaaatcgtc gttatcagcg cctgatgagc tacggttacg
    52261 cgtaattcgc aaaagttctg aaaaagggtc acttcggtgg ccctttttta tcgccacggt
    52321 ttgagcaggc tatgattaag gaaggatttt ccaggaggaa cacatgaaca tcattgccat
    52381 tatgggaccg catggcgtct tttataaaga tgagcccatc aaagaactgg agtcggcgct
    52441 ggtggcgcaa ggctttcaga ttatctggcc acaaaacagt gttgatttgc tgaaatttat
    52501 cgaacataac cctcgaattt gcggcgtgat ttttgactgg gatgagtaca gtctcgattt
    52561 atgcagcgat atcaatcaac ttaatgaata tctcccgctt tatgccttca tcaacaccca
    52621 ctcgacgatg gatgtcagcg tgcaggatat gcggatggcg ctctggtttt ttgaatatgc
    52681 gctggggcag gcggaagata tcgccattcg tatgcgtcag tacaccaacg aatatcttga
    52741 taacattacg ccgccgttca cgaaagcctt gtttacctac gttaaagagc ggaagtacac
    52801 cttttgtacg ccggggcata tgggcggcac cgcatatcaa aaaagcccgg ttggctgcct
    52861 gttttatgat tttttcggcg ggaataccct caaggctgat gtctctattt cggtcaccga
    52921 gcttggttcg ttgctcgacc acaccgggcc acacctggaa gcggaagagt acatcgcgcg
    52981 gacttttggc gcggaacaga gttatatcgt taccaacgga acatcgacgt cgaacaaaat
    53041 tgtgggtatg tacgccgcgc catccggcag tacgctgttg atcgaccgca attgtcataa
    53101 atcgctggcg catctgttga tgatgaacga tgtagtgcca gtctggctga aaccgacgcg
    53161 taatgcgttg gggattcttg gtgggatccc gcaccgtgaa tttactcgcg acagcatcga
    53221 agagaaagtc gctgccacca cgcaggcaca atggccggtt catgcggtga ttaccaactc
    53281 cacctatgat ggcttgctct acaacaccga ctggatcaaa cagacgctgg atgtcccgtc
    53341 gatccacttc gattccgcct gggtgccgta cacccatttt catccgatct accaggggaa
    53401 aagtgatctt cgaaacgcaa tcgacccaca aaatgctggc ggcgttatcg caggcttcgc
    53461 tgatccacat taaaggcgag tatgacgaag aggcgtttaa cgaagccttt atgatgcata
    53521 ccaccacctc gcccagttat cccattgttg cttcggttga gacggcggcg gcgatgctgc
    53581 gtggtaatcc gggcaaacgg ctgattaacc gttcggtgga gcgggcgctg cattttcgca
    53641 aagaggtcca gcggttgcgg gaagagtctg acggttggtt tttcgatatc tggcaaccgc
    53701 cgcaggtgga tgaagccgaa tgctggcccg ttgcgccagg cgaacagtgg cacggcttta
    53761 acgatgcgga tgccgatcat atgtttctcg atccggttaa agtcactatt ttgataccgg
    53821 ggatggacga acagggcaat atgagcgagg aggggatccc ggcggcgctg gtggcaaaat
    53881 tcctcgacga acgtgggatc gtagtagaga aaaccggccc ttataacctg ctgtttctct
    53941 ttagtattgg tatcgataaa accaaagcaa tgggattatt gcgtgggttg acggaattta
    54001 aacgctctta cgatctcaac ctgcggatca aaaatatgct acccgatctc tatgctgaag
    54061 atcccgattt ctaccgcaat atgcgtattc aggatctggc gcaagggatc cataagctga
    54121 ttcgtaaaca cgatcttccc ggtttgatgt tgtgggcatt cgatactttg ccggaaatta
    54181 tcatgacgcc acatcaggca tggcagagac agattaaagg tgaagtagaa accattgcgc
    54241 tggaacaact ggtcggtaga gtatcggcaa atatgagcct gccttatcca ccgggcgtac
    54301 cgctgttgat gccaggagaa atgctgacca aagagagccg cacggtactc gattttctac
    54361 tgatgctttg ttccgtaggg caacattacc ccggttttga aacggatatt cacggcgcga
    54421 aacaggacga agacggcgtt taccgcgtac gagtcctaaa aatggcggga taacttgcca
    54481 gagcggctta cgggcgagta acgtgctgtt aacaaataaa ggagacgtta tgctgggttt
    54541 aaaacaggtt caccatattg cgattattgc gacggattat gcggtgagca aagctttcta
    54601 ctgcgatatt cttggtttca cgctgcaaag cgaagtctat cgcgaagcgc gcgactcgtg
    54661 gaaaggggat ttggcgctta atgggcaata tgtgattgag cttttctctt ttccgttccc
    54721 gccggagcgc cccagccgac cggaagcttg cggcctgcgt catctggctt ttagcgttga
    54781 tgacatcgat gcggcagtgg cgcaccttga aagccataac gtgaagtgtg aagccatccg
    54841 tgtcgatcca tacacgcaaa aacgcttcac cttctttaac gatccggacg ggctgccgtt
    54901 ggaactgtat gagcagtaag gcttgtcatc gccgcatttg cccggtaacg tgccgggcat
    54961 tgctactgta aaatcgcacc atcatgacac tcacgctcaa tagacaactt ctcacctcac
    55021 gccagatttt ggtcgccttt agcggcgggc ttgactccac cgttctgctg catcagttgg
    55081 tgcagtggcg gacggaaaat ccgggcgtca ctctgcgcgc tattcatgtg catcacggtt
    55141 taagtgccaa tgccgatgcc tgggttacgc attgcgaaaa cgtctgccaa cagtggcagg
    55201 tgccgctggt ggtcgaacgc gtacaacttg cgcaagaggg gctggggatt gaggcccagg
    55261 cgcggcaggc gcgttatcag gcatttgccc gtaccctatt gcccggcgaa gtgctggtca
    55321 ccgcgcaaca tctcgacgat caatgtgaaa cctttctgct ggcgctaaaa cgcggtagcg
    55381 gccctgccgg gctttcggct atggcggaag tttcggagtt tgccggaaca cggcttatcc
    55441 gcccgttgct tgcccgcacg cggggggaac tggcgcagtg ggcattggcg catggtttac
    55501 gctggattga agacgaaagt aatcaggacg actcatacga tcgtaacttt ctgcgcctgc
    55561 gcgtagtgcc gttattgcag cagcgttggc cgcattttgc ggaagcaacg gcccgcagcg
    55621 ccgcactttg tgctgaacaa gagagtctgt tggatgaact gctggcggat gatttagcac
    55681 actgccaaac gtcgcagggg acgctgcaga ttgcgccaat gctggcgatg agtgatgccc
    55741 gccgcgcggc gattatccgt cgctggctgg cagggcagaa tgcaccaatg ccttcccgcg
    55801 aagcgctggt gcggatctgg caggaagtgg cgctggcgcg ggaagatgcc tccccctgtt
    55861 tacgcttggg cgcgtttgaa atccgccgct atcagtcgca actgtggtgg attaaatccg
    55921 tcaccgggca aagtgaaacc attgtgccgt ggcagacgtg gctacaaccg ctggaattac
    55981 cggcggggct gggaagcgta cagcttactg cgggaggcga tattcgccct ccgcgtgcag
    56041 acgaagcggt cagcgtgcgt ttcaaatcgg caggattgct gcatattgtc gggcgcaacg
    56101 gcggacgtaa gctgaagaaa atctggcaag agttaggcgt gccgccgtgg ctacgtgaca
    56161 ccacgccact gctgttttat ggcgaaacgc tgattgcggc ggcaggggta tttgtgacgc
    56221 aagaaggtgt ggctgaaggt gagaatggcg taagttttgt ctggcagaaa acgcttagtt
    56281 aagtgaaagc cggataagac gcatcaaacg tcgcatccgg cgaaagtcaa tcaggactcg
    56341 ctcaccacca ccgtaccgat ttccgggtgg ctaaagctgg taattttatc cagacgtagc
    56401 tcacgggttt cgccagcggc ctcgacgacc agatactcca catttttgcg ggagactaaa
    56461 tcgctggctt ttgcctgcaa tttttcgcca tctttcagct caagtgtcag cattaaatga
    56521 tgctggcagg cgagctcaag attatcgtaa tcatcacaat tgattggttg atacgtatca
    56581 ttcattaata taatcgctca ccagtaagtt tgccgcagcg tatgctgctt tttccctgac
    56641 agcctcagaa agggcgtcgt cggcagccat ttcattcagc actttcaaaa cgcagcccag
    56701 cgcgtccgga acgtatccta agtctccgct ggcgatttcc gcgtaccgct tgcgtattaa
    56761 ctcacaatat ttttccacat gccctcctgt cagcacactg acttaaccgt ggatgcaagt
    56821 ctaagcctac gaagataaac tctgtttcgc aaggtgacta taccacactc atttctgcaa
    56881 tatcagcgcc gcaactgcac gtattccgtt acaatggcct cctgattcga aaggagtttt
    56941 cttatggcgc ttaaagcgac aatttataaa gcgacggtta atgtggccga tctcgaccgc
    57001 aaccagtttc tcgatgcctc tctgacgctg gcgcgccacc cttcagaaac ccaggagcgt
    57061 atgatgctgc gcctgctggc gtggctgaaa tatgctgatg aacgtctgca atttacccgt
    57121 ggtttgtgtg ccgatgatga gccggaagcg tggctgcgta acgatcacct gggcattgat
    57181 ttgtggattg agctggggct gccggatgag cggcggatta agaaagcctg cacccaggcc
    57241 gcagaagtgg cgctgtttac ctataatagt cgggcggcgc aaatctggtg gcagcaaaat
    57301 cagagcaaat gtgtgcagtt tgccaatctt tccgtctggt atctggacga tgaacaactg
    57361 gcgaaagtaa gcgcctttgc cgatcgtacc atgacgctgc aggcaacgat tcaggatggc
    57421 gtgatctggt tatcggacga taagaataat ctggaagtta acttaaccgc ctggcaacaa
    57481 ccttcatgat tgtgatttcc cgacatgttg ctattcccga tggtgagctt gagatcaccg
    57541 ccattcgtgc gcagggcgcg ggcgggcagc atgttaataa gacctcaacg gccattcatc
    57601 tgcgttttga cattcgggcg tccagcctgc cagagtatta caaagagcgt ctgctcgccg
    57661 ccagccatca tttgatcagc agtgatggcg tgattgtcat taaggcacag gaataccgca
    57721 gtcaggaact gaaccgcgaa gccgcgctag cccggctggt ggcagtgatt aaagatttaa
    57781 caacagaaca aaaagcccga cgacccacgc ggcccacccg tgcatcgaaa gagcgcaggc
    57841 tggcatcgaa agcacaaaaa tcaagcgcga aggcgatgcg cggcaaagta cgcagcggtc
    57901 gggaataaaa agaaggaata gatggtgaaa aaagcgatag tgacagcgat ggctgtaatc
    57961 agcctcttta ctctgatggg atgtaataac cgggccgaag tcgatacgct ttctccagca
    58021 caggctgccg aactgaaacc gatgccgcaa agttggcgcg gcgtgctgcc gtgtgctgat
    58081 tgtgaaggaa tcgaaacctc tctgttcctc gaaaaagacg gaacatgggt gatgaatgag
    58141 cgttatctcg gtgctcgtga agaaccttcc tccttcgctt cctacggtac atgggcgcga
    58201 accgctgaca agctggtatt aaccgacagc aaaggtgaaa agtcatatta tcgggcgaaa
    58261 ggcgatgcgc tggagatgct cgatcgtgaa ggcaatccga ttgaatcgca gttcaactat
    58321 acgctggaac cggcacaatc cagtttacct atgacgccga tgaccctgcg aggcatgtat
    58381 ttttatatgg ctgatgcggc gaccttcact gattgcgcga ccggaaaacg tttcatggta
    58441 gcgaataacg cagagctgga gcgtggctac ctggctgcgc gcggtcacag tgaaaaaccg
    58501 gtgttactgt cagtagaagg tcactttacg cttgaggcta atccggatac tggtgcgcca
    58561 accaaagtat tagcgcccga tacggcgggt aaattttacc cgaataagga ttgcagtagt
    58621 ttggggcagt aaacctgctt aaggcagaaa caaacgcaaa acaggccaga aggatatatt
    58681 tcaacatttt gaatttgcac gttttttgta ggccggataa ggcgtttacg ccgcatccgg
    58741 caatggtgct caaagcctga tgcgacgctg gcgcgtctta tcatgcctac aacccccctc
    58801 ataccttaag gcggataagg catttacttt atcaccgggt caaaccaaca aagcgacccg
    58861 ccttgatata aatccctggc ttcaggtgcc caacatactg taactgcgtt tctggcttaa
    58921 acgcagagac atcaccaata cgcatatgca tcagatcggc agggctaatc cagcccgatt
    58981 gcgccagtgt aagtggatgt ccggctttgg caaatgcatc agtgacaaat tccgaacaaa
    59041 accacgactt tttgtctcct tcgcccacac tgcttaactg cgctttcgcc aggccgctga
    59101 cgcactgctg gcgaaaatcc tcggagaact gattcagtga gcacatctgg cgagtcacca
    59161 taaagggaat aaattcgaca atgccgcgat agttataacc gctatctttg attttattgg
    59221 caaacgcggt gatatctgtg gcttgttgcg gggtaagatc cgggactcgt aagacgaaaa
    59281 gcttatcact atgcttcatc gcttttttaa gggaaacaat ctggacgcca gcgcctgtcg
    59341 cttctgcaac gttattatca cccagaaaga ttgcaacgtg actcacagag gaagtgctga
    59401 agacgcggat tccaaatgag gttaccccaa ggcttgagga gaacagcaaa tcgccgggtt
    59461 tgagatcagg tgccgttatt tcttttattg attgttcggt gaaagagctt tgatgctgga
    59521 atttgacagc ccatgttttt gcctcggcat ctactgctgt ggctgatggg gctggctgat
    59581 atcaacggta caagccgaaa gtaaaagaaa gctggggaga agcaggcggc agtacgcctt
    59641 tggtttatcc attttataca atccatgtaa aaaagggccc tgaaattcag gaccctttct
    59701 ggcatcagcc tttaatctgt ttcaccagat attcgacgat gtcaccagtc ttaattaact
    59761 gtttctcgcc gttgcgacga tatttatatt cgatatcgtc gttgtcgagg ttacggtcgc
    59821 ccagcacaat agtgtgcgga ataccgatca gttccatatc agcaaacatc acgcccggac
    59881 gctctttgcg gtcatccagc agcacttcga taccttgtgc acgcagttcg ctgtacagtt
    59941 tctcagcaag ctcttgtacg cggaaggatt tgtgcatgtt catcggcaga atcgccacct
    60001 ggaacggcgc gatagcgtca ggccatacga tgccgcgttc gtcgtagttc tgctcaatcg
    60061 ccgcagctac cacacgcgtt accccgatac cgtagcaacc catcgtcagg atttggttac
    60121 ggccatcttc accctgtacg gaggctttca gtgcttcgga gtacttggta cccagctgga
    60181 agatgtgacc aacttcgata ccacgtttga tcagcagcgt accctggcca tccgggcttg
    60241 gatcgccagc caccacgtta cggatatctg caacttccgg ggtagcgaca tcgcgatccc
    60301 agttgatacc gaagtagtgt ttaccatcga tgttagcacc agcagcgaaa tcactcatcg
    60361 ccgcaacggt acggtcaatc accaccggaa tcggcatgtt taccggaccc agtgaacccg
    60421 gaccggcttt aaccacagca cgaatttctt cttcggtcgc gaaagtcagc gggcttgcaa
    60481 cctgcggcag tttttctgct ttaacttcgt tcagctcgtg atcaccgcgc accagcagcg
    60541 caaccagcgg gaagctgctg ccttcaaccg ctttaaccag cagagtctta accgttttct
    60601 caatcggcag attgaactgt tcaaccagtt ccgcgatggt tttcgcgttc ggcgtatcaa
    60661 ccagcgtcat ttcctgggta gcagcagcgc gcggttcttt cggcgcgata gcttctgcca
    60721 gttcaatgtt cgctgcatag tcagaggtgt cggagaagac cacatcgtct tcaccgctct
    60781 gcgccagcac ctggaattcg tgagaggcgc tgccgccgat agaaccggtg tcggcttgca
    60841 cggcgcggaa atccagcccc atgcggctga agattttgct gtaggccgca tacattgcat
    60901 cgtaggtttc ctgcagggat tcctgagaag tatggaaaga gtaagcatct ttcatcagga
    60961 attcgcggga acgcatgacg ccgaaacgcg gacgcacttc gtcgcggaac ttggtctgga
    61021 tctgatagaa gttcagcggc agctgtttgt aagagctaag ctcgttacga atcaggtcag
    61081 tgataacttc ttcatgagtt gggccgagta cgaacggacg ctcgccacgg tcaacaaaac
    61141 gcagcagttc cggaccgtac tgttcccaac gaccactctc ttgccacaaa tcggctggct
    61201 gaaccaccgg catcgacacc tcgattgcac cggcgttgtt catctcttca cgcacgatgt
    61261 tttcgacttt tttcagaacg cgcacgccgg tcggcagcca ggtatataac ccggaggcca
    61321 gcttgcggat catcccggcg cgcagcatca gctgatggct gatcacctcg gcgtcggcag
    61381 gtgtctcctt gagagtggag agcaggtatt ggctagtacg catgttgtta cggttccagt
    61441 tggaaggtag aacaggctca aggcgagcct gggacaaaaa agtgatttag tttaccagtg
    61501 caaaagaaat gtcaaaagag aagggcgtga atttaacgcg gttccagcgc aaagacttca
    61561 aaacctgcgt cggtgacgcg ccagcgaacg ttaaaatcat gtagccagac ggcataggtt
    61621 ttgcccgttt cctcaccttt atgataggcc gggcgcgggt cctgcgccag tacttcgcgg
    61681 ataaacagcg ttaactgcgg ataacgcttc tccagcgtca aaagctgctt ttcgacctct
    61741 gcggtaaaac tcaccgccat ctctgcagct ggcgcacttt gcgcatagct ggcactggca
    61801 tcgggaagcg attcggcaaa ggggagatac ggtttgatat ccactaccgg cgtaccatcg
    61861 accagatcca gactgccgag cttcagaatc acgctgtctt tatggcaaac aacctctttc
    61921 agctctacca gcgacatacc aattgggtta gggcggaaag tagagcgtgt tgcgaaaacc
    61981 cccattctgg cgttaccgcc gaggcgcggt ggacgcacag tcggacgcca gccgccttcc
    62041 atcgtttgat gaaagacgaa aaggatccat aaatggctga acgcttccag gccgcgaacg
    62101 gcgtcggcct ggttgtaggg agcaatgaga tgcagttcgc cgttggcgct ttttaccaga
    62161 cctggctggc gcggaacggc gaatttttct ttatagggcg agcgaataac gcctatttgc
    62221 tcgaactgga aactgctcat ttcgccgtaa tgttaagcgc agagccgata catacagcct
    62281 gacgatagca gcctggcgta ccgctggtga cttcgcagct atgcagtaat accgcattgg
    62341 ctttcatttt agaggcgttg atttgcatcc gcttacgcgc ggttggaatg ctcggcggag
    62401 agtcctgatt agaggcctgg caagagtcgc cactgacttc accgagatcg cggaacggtt
    62461 tgccgactaa ttcttctgca ttggtataaa ttcggaccgg cgtggcgcgc ggcgctttcg
    62521 gttttgcagg ctccgctttc ggctggggtg cagtgctttg aacgggttcg acaggggatc
    62581 tgcttaacat ggaacagccg cttagcatga gtgctactaa acagatcggt aaagcacgca
    62641 tagtatttcc tcaatgtatg atcaaaacgt caatattgaa tcaggagctt gtaaaaatga
    62701 caagacgggc aagtgcccat cctgaatgat attacaaatt gtggaaacag cctaaaaatt
    62761 accagccttt aacagcgccg ccgttaaaca ctttgtttgc tgcttcgtaa acttcatcag
    62821 actgataagc ctggacgaat ttcttcacgt tctcggcgtc tttgttatct tcacgcgtta
    62881 cgatcaggtt tacgtacggg gagtctttat cttcgacaaa gataccgtct ttcgctggag
    62941 tcaggccaat ctggctggca taggtggtat tgataactgc cagagcgatt tgtgcgtcgt
    63001 ccagagatcg aggcagctgc ggtgcttcca gctcaacaat tttcagattt tttgggttct
    63061 caacaacatc aagtacggtc ggcagcaggc caacgccatc tttcagtttg atcaagccca
    63121 ctttttgcag cagcagcagt gaacgaccaa ggttagttgg atcgtttggc acggcaacct
    63181 gcgaaccatc ctgcagttca tccagtgatt tgattttctt ggagtaacca gcaatcggat
    63241 aaacaaaagt gttgcctact gcgaccagtt tgtagccacg atctttcagt tgctgatcaa
    63301 ggtacggttt atgctggaag gcgttggcgt cgatatcgcc tttgctcaat gcttcgtttg
    63361 gcagaacata gtcgttgaag gttaccagct caacgtccag gccatatttg tctttcgcaa
    63421 ctttctgcgc gacttctgca acctgctgtt cggcaccaac aatcacgccg actttaatgt
    63481 ggtttggatc tttttcatcc tgaccgcagc ctaccagtgc cagtgatcca atcagggctc
    63541 ccactgccgc aaaggttttg aatttgaacg ccatacctta ttccttcttc aattatttat
    63601 gttgtgttga acgttacttg cgagtgacag cccggacgat gcggtcgcct gcgaactgaa
    63661 ttaaataaac cagaatgacc agcaatacca gtaccgtatt catcaccgtc gcgttatagc
    63721 cgatgtagcc atactgatag ccaatctgac ctaaaccacc ggcaccgaca gcaccaccca
    63781 tcgcggaata accgactagg gtaatcaggg tgatagttgc cgcattcacc agacccggca
    63841 atgcttccgg taacagcact ttacggacga tctgcatcgg cgtggcaccc attgcacggg
    63901 aagcttcaat taacccggtt gggatctcca gcagagcgtt ctcgaccata cgggcaataa
    63961 acggtgctgc accaacggtt aacggaacaa tcgctgcctg caaaccaatc gatgtaccaa
    64021 caataacgcg ggtaaacgga atcatccata ccagcaagat aatgaacggg atagaacgga
    64081 aaatgttcac aatcgcagaa acggtacgat acagcttcgc gttagcaata atttgccccg
    64141 gacgcgtgac ataaagcaga acgccaaccg gcagaccaat cacaaagcca aaaaaaccgg
    64201 atacgaaggt cattgccagc gtttcccata cgccacgaac cagcagccac atcatcggct
    64261 cagacataac ccagtacctc tacttttaca tggtgttcct gcagccaggc aatggcggct
    64321 tgcgtatctt gttgtgtgcc gtgcatttca gtcagcatga tgccgaactt aacgccaccg
    64381 gcgtagtcca tctgcgcgct aataatgttg ttgttgacgt tgaaacgacg cgcggtttca
    64441 gaaagcagtg gggcatcgac cgattgaccg gtaaactcca gacgcagcat cggcacgcag
    64501 tcagtaaatg gctccgcttg cagacgttcc tggtaatctt ccgggatatc cagatgcagg
    64561 gtcgactgaa taaacttctg cgccagcggc gttttcggat gcgagaacac ttcacttacc
    64621 gtgtcctgct cgatcagttc gccattgctg atgaccgcca cgcaatcaca aatacgcttc
    64681 acaacgtcca tttcgtgggt gatcaacaga atcgtcaaac ccagacggcg gttaatgtct
    64741 ttcagcagtt cgagaataga acgtgtcgtt gccgggtcca gcgcgctggt ggcttcatca
    64801 cacagcaata ctttgggatt gctggctaat gcacgggcaa tcgccacacg ttgtttctgc
    64861 ccaccggaaa gattcgacgg gtagctatca tgcttatcgc caagaccaac caatgacagc
    64921 aattccgtca cgcgacgttt gatctcgtct ttcggtgtgt tgtccagctc cagcggcaga
    64981 gccacgttgc caaaaacagt acgcgaagag agcaggttaa aatgctggaa aatcatacca
    65041 atctggcggc gagctttggt caactcggat tctgacagcg tggtcagttc ctggccatcg
    65101 accagcacgc taccctcggt tgggcgctcc agcaggttta cacaacgtat aagcgtactc
    65161 ttacccgcgc ctgaggcacc gataacgcca taaatttgtc cagctggcac atgcaggctg
    65221 acgttgttca acgcctggat gatgcgggtg ccctggtgga acactttggt gatattcgaa
    65281 agttttatca ttgattattt attatcgtca ttaagttagt cgtggcatct cgaatgcctg
    65341 aaacgggcaa cgccgtcaat gaaatggatg ttaaggcatc cagacgtcta aatcaatcag
    65401 gtttatgcga agagcacttt cttgcaggtc gaaacatgcg atactagcgt cacatgcctt
    65461 attaaggagc tataaaaggt ggcaaagagc gtacccgcaa tttttcttga ccgtgatggc
    65521 accattaatg tcgatcacgg ctatgtccat gagatcgaca actttgaatt tatcgacggt
    65581 gttattgacg ccatgcgcga gctaaaaaaa atgggctttg tgctggtggt agtaaccaac
    65641 cagtctggca ttgctcgcgg taaatttacc gaagcacagt ttgaaacgct gaccgagtgg
    65701 atggactggt cgctggcgga ccgagatgtc gatctggatg gtatctatta ttgcccgcat
    65761 catccgcagg gtagtgttga agagtttcgc caggtctgcg actgccgtaa accacatccg
    65821 gggatgcttt tgtcagcacg cgattatttg catattgata tggccgcttc ttatatggtg
    65881 ggcgataaat tagaagatat gcaggcagcg gctgcggcga acgtgggaac aaaagtgctg
    65941 gtgcgtacgg gtaaacctat tacgcctgaa gcagaaaacg cggcggattg ggtgttaaat
    66001 agcctggcag acctgccgca agcgataaaa aagcagcaaa aaccggcatg atgattaaaa
    66061 gatgagcgat tgaaataaaa atgcattttt ccacttgtct tcctgagacg actccctata
    66121 atgcgcctcc atcgacacgg cggatgtgaa tcacttcaca caaacagccg gttcggttga
    66181 agagaaaaat cctgaaattc agggttgact ctgaaagagg aaagcgtaat atacgccacc
    66241 tcgcgacagt gcgctaaagt gcgtcgcaac tgctctttaa caatttatca ggcaatctgt
    66301 gtgggcactc gaagatacgg attcttaacg tcgcaaggcg aaaaatggat accaagtctc
    66361 aagagtgaac acgtaattca ttacgaagtt taattctttg agcatcaaac ttttaaattg
    66421 aagagtttga tcatggctca gattgaacgc tggcggcagg cctaacacat gcaagtcgaa
    66481 cggtaacagg aatcagcttg ctgattcgct gacgagtggc ggacgggtga gtaatgtctg
    66541 ggaaactgcc tgatggaggg ggataactac tggaaacggt agctaatacc gcataatgtc
    66601 gcaagaccaa aaagggggac cttcgggcct cttgccatc
//
LOCUS       DADMJB010000004        65746 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.004, whole genome shotgun sequence.
ACCESSION   DADMJB010000004 DADMJB010000000
VERSION     DADMJB010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 65746)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 65746)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..65746
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.004"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            107..1555
                     /gene="cas3"
                     /locus_tag="JN078_000233"
     CDS             107..1555
                     /gene="cas3"
                     /locus_tag="JN078_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000879013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated helicase Cas3'"
                     /protein_id="HAY9039559.1"
                     /translation="MLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACD
                     AYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGAEGQQEAPLLGKDDY
                     PWLTHVTKTDVHSHRVATRKEVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSV
                     DDAIQVYRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRAAQVIV
                     CTQVIEQSVDIDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELL
                     ILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESV
                     YGEDVVMPEGFARSEQEQVGKYYCDRARAKKYVLNFRLGYAANINDYLPEKLSTRLAE
                     ESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGDAFRQWCVE
                     QRQDPEMANVILVTDDESCGYSAREGLIGKVG"
     gene            1653..3215
                     /gene="casA"
                     /locus_tag="JN078_000234"
     CDS             1653..3215
                     /gene="casA"
                     /locus_tag="JN078_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein Cse1/CasA"
                     /protein_id="HAY9039560.1"
                     /translation="MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADL
                     QGAAWQFLLGLLQTSFAPKDQRSWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFM
                     QDFDELKVKATFIASLLPDAPGKQTKERNTDHFIKRDTTQHLCLHCVPLALFSIQLNA
                     PIGGRGYYPGLRGGGPLTTLIELLEYQGNQQTPLWRKLWLNVMPQDEADLPLPKTFDD
                     LVFPWLAPTRTSELDGAVVTDEQVNKLQAYWGMPRRIRIDFKTTSIGNCDICGRQSDA
                     LLGLMSLKNYGVQYVMWRHPLTPYRLPLKEGGDFYSVKPQPGGLIWRDWLGLIEVGNS
                     KNNTELPAQVVKLLNASNLKQTRVGLWGFGFDFEDMKVRCWYEHHFPLLLNKKEDLIP
                     KLRLAAQAASHILSLLHRALKEAWFSEKKTTKLDFGFVDIDFWNKTQHRFLRLVRKIE
                     EGQDPDELLSKWQKEMWLFARQDFDDRVFTNPYEPVDLERVMTARKKYFTTSAEKQNA
                     NAAREKKQEAAE"
     gene            3212..3780
                     /gene="casB"
                     /locus_tag="JN078_000235"
                     /pseudo
     CDS             3212..3780
                     /gene="casB"
                     /locus_tag="JN078_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311640.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein Cse2/CasB"
     gene            3795..4873
                     /gene="cas7e"
                     /locus_tag="JN078_000236"
                     /pseudo
     CDS             3795..4873
                     /gene="cas7e"
                     /locus_tag="JN078_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311639.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein
                     Cas7/Cse4/CasC"
     gene            4884..5630
                     /gene="cas5e"
                     /locus_tag="JN078_000237"
     CDS             4884..5630
                     /gene="cas5e"
                     /locus_tag="JN078_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein Cas5/CasD"
                     /protein_id="HAY9039561.1"
                     /translation="MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSLSALLGLLAAGV
                     GIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSDPE
                     LLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPL
                     APLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGKHDGLVASKILRRRDV
                     PLNRQQWLFGERTVNQGPWLSKEEPCTSQE"
     gene            5612..6262
                     /gene="cas6e"
                     /locus_tag="JN078_000238"
     CDS             5612..6262
                     /gene="cas6e"
                     /locus_tag="JN078_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000281458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein
                     Cas6/Cse3/CasE"
                     /protein_id="HAY9039562.1"
                     /translation="MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPSGKERQ
                     FLYRREELQGAFRFFVLSQERPAESDTFTIECRSFAPELCTGQQLCFNLRANPTICKA
                     GKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDISVDAYRQQQ
                     LRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA"
     gene            6259..7179
                     /gene="cas1e"
                     /locus_tag="JN078_000239"
     CDS             6259..7179
                     /gene="cas1e"
                     /locus_tag="JN078_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated endonuclease Cas1"
                     /protein_id="HAY9039563.1"
                     /translation="MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHI
                     PVGSVACIMLEPGTRVSHAAVHLAATVGTLQVWVGEAGVRVYSSGQPGGARADKLLYQ
                     AKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKW
                     NGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYD
                     IADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGE
                     IEPPQPAPDMLPPAIPEPETLGDSGHRGRG"
     gene            7179..7472
                     /gene="cas2"
                     /locus_tag="JN078_000240"
     CDS             7179..7472
                     /gene="cas2"
                     /locus_tag="JN078_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated endoribonuclease
                     Cas2"
                     /protein_id="HAY9039564.1"
                     /translation="MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIW
                     QQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ"
     gene            complement(7679..8716)
                     /gene="iap"
                     /locus_tag="JN078_000241"
     CDS             complement(7679..8716)
                     /gene="iap"
                     /locus_tag="JN078_000241"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase isozyme conversion
                     aminopeptidase"
                     /protein_id="HAY9039565.1"
                     /translation="MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFF
                     PGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIA
                     AHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKN
                     TPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGV
                     KTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSV
                     EATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIM
                     LPLVKELAKAS"
     gene            8968..9876
                     /gene="cysD"
                     /locus_tag="JN078_000242"
     CDS             8968..9876
                     /gene="cysD"
                     /locus_tag="JN078_000242"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HAY9039566.1"
                     /translation="MAQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVML
                     HLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINP
                     FVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDP
                     KNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLE
                     RDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVST
                     TSERQGRVIDRDQAGSMELKKRQGYF"
     gene            9878..11305
                     /gene="cysN"
                     /locus_tag="JN078_000243"
     CDS             9878..11305
                     /gene="cysN"
                     /locus_tag="JN078_000243"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysN"
                     /protein_id="HAY9039567.1"
                     /translation="MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLI
                     GRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF
                     STEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGI
                     KHLVVAINKMDLVDYSEETFTHIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSE
                     SMSWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQ
                     RVKALPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAV
                     PSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYPVDINNLTQREVENLPLNG
                     IGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPKNEAAVASSEFSA
                     FELELNALVRRHFPHWGARDLLGDK"
     gene            11305..11910
                     /gene="cysC"
                     /locus_tag="JN078_000244"
     CDS             11305..11910
                     /gene="cysC"
                     /locus_tag="JN078_000244"
                     /EC_number="2.7.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyl-sulfate kinase"
                     /protein_id="HAY9039568.1"
                     /translation="MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTV
                     AGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLV
                     VLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFT
                     GIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS"
     gene            11960..12283
                     /locus_tag="JN078_000245"
     CDS             11960..12283
                     /locus_tag="JN078_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3561 family protein"
                     /protein_id="HAY9039569.1"
                     /translation="MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPML
                     IYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALF
                     MWLLG"
     gene            12477..12788
                     /gene="ftsB"
                     /locus_tag="JN078_000246"
     CDS             12477..12788
                     /gene="ftsB"
                     /locus_tag="JN078_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HAY9039570.1"
                     /translation="MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNA
                     KLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNN
                     R"
     gene            12807..13517
                     /gene="ispD"
                     /locus_tag="JN078_000247"
     CDS             12807..13517
                     /gene="ispD"
                     /locus_tag="JN078_000247"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HAY9039571.1"
                     /translation="MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHA
                     LLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWV
                     LVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGL
                     WHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPE
                     DLALAEFYLTRTIHQENT"
     gene            13517..13996
                     /gene="ispF"
                     /locus_tag="JN078_000248"
     CDS             13517..13996
                     /gene="ispF"
                     /locus_tag="JN078_000248"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HAY9039572.1"
                     /translation="MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHAL
                     TDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQA
                     PKMLPHIPQMRVFIAEDLGCHIDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK"
     gene            13993..15042
                     /gene="truD"
                     /locus_tag="JN078_000249"
     CDS             13993..15042
                     /gene="truD"
                     /locus_tag="JN078_000249"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HAY9039573.1"
                     /translation="MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHI
                     LVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLS
                     AFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYF
                     GAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQ
                     VVDGDALQLAGRGSWFVATTEELAELQHRVNDKELMITAALPGSGEWGTQRKALAFEQ
                     AAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVV
                     RELINTTGDYAHIAE"
     gene            15023..15784
                     /gene="surE"
                     /locus_tag="JN078_000250"
     CDS             15023..15784
                     /gene="surE"
                     /locus_tag="JN078_000250"
                     /EC_number="3.1.3.5"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HAY9039574.1"
                     /translation="MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNS
                     LTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVI
                     YSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINV
                     PDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVD
                     EGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW"
     gene            15778..16404
                     /gene="pcm"
                     /locus_tag="JN078_000251"
     CDS             15778..16404
                     /gene="pcm"
                     /locus_tag="JN078_000251"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HAY9039575.1"
                     /translation="MVSRRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKA
                     WDNIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCS
                     VERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMT
                     QLDEGGILVLPVGEEHQYLKRVRRRGGEFIIDTVEAVRFVPLVKGELA"
     gene            16544..17635
                     /gene="nlpD"
                     /locus_tag="JN078_000252"
     CDS             16544..17635
                     /gene="nlpD"
                     /locus_tag="JN078_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein hydrolase activator NlpD"
                     /protein_id="HAY9039576.1"
                     /translation="MSAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAP
                     ANTNSGMLITPPPKMGTTSTAQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSY
                     SGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGG
                     NAITQADAAEQGVVIKTAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPAATTVTA
                     PVTVPTASTTEPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAI
                     IATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMG
                     STGTSSTRLHFEIRYKGKSVNPLRYLPQR"
     gene            17698..18690
                     /gene="rpoS"
                     /locus_tag="JN078_000253"
     CDS             17698..18690
                     /gene="rpoS"
                     /locus_tag="JN078_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoS"
                     /protein_id="HAY9039577.1"
                     /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEE
                     LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV
                     VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
                     QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER
                     ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLAR
                     RFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE"
     gene            complement(18784..20148)
                     /locus_tag="JN078_000254"
     CDS             complement(18784..20148)
                     /locus_tag="JN078_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family transporter"
                     /protein_id="HAY9039578.1"
                     /translation="MSTITLLCIALAGVIMLLLLVIKAKVQPFVALLLVSLLVALAAG
                     IPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTI
                     AALTLAAFFLGIPVFFDVSFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPP
                     HPGPVATAGLLHADIGWLTIIGIAISIPVGIVGYFAAKIINKRQYAMSVEVLEQMQLA
                     PASEEGATKLSDKINPPGVALVTSLIVIPIAIIMTGTVSATLMPPSHPLLGTLQLIGS
                     PMVALMIALVLAFWLLALRRGWSLQHTSDIMGSALPTAAVVILVTGAGGVFGKVLVES
                     GVGKALANMLQMIDLPLLPAAFIISLALRASQGSATVAILTTGGLLSEAVMGLNPIQC
                     VLVTLAACFGGLGASHINDSGFWIVTKYLGLSVADGLKTWTVLTTILGFTGFLITWCV
                     WAVI"
     gene            complement(20237..21013)
                     /locus_tag="JN078_000255"
     CDS             complement(20237..21013)
                     /locus_tag="JN078_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HAY9039579.1"
                     /translation="MPRFAANLSMMFTEVPFIERFAAARKAGFDAMEFLFPYDYSTLQ
                     IQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNCEQV
                     HVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPDVKPHYLFSSQYQ
                     ALAIVEEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQIAGLPDRHEPDDGE
                     INYPWLFRLFDEVGYQGWIGCEYKPRGLTEEGLGWFDAWR"
     gene            complement(21018..21655)
                     /locus_tag="JN078_000256"
                     /pseudo
     CDS             complement(21018..21655)
                     /locus_tag="JN078_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417218.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
     gene            complement(21652..22913)
                     /locus_tag="JN078_000257"
                     /pseudo
     CDS             complement(21652..22913)
                     /locus_tag="JN078_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001649192.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
     gene            complement(22910..23818)
                     /locus_tag="JN078_000258"
     CDS             complement(22910..23818)
                     /locus_tag="JN078_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HAY9039580.1"
                     /translation="MKTGSEFHVGIVGLGSMGMGAALSCVRAGLSTWGADLNSNACAT
                     LKEAGACGVSDNAATFAEKLDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSST
                     IASADAQEIATALAGFDLEMLDAPVSGDAVKAANGEMTVMASGSDIAFERLAPVLEAV
                     AGKVYRIGAEPGLGSTVKIIHQLLAGVHIAAGAEAMALAARAGIPLDVMYDVVTNAAG
                     NSWMFENRMRHVVDGDYTPHSAVDIFVKDLGLVADTAKALHFPLPLASTALNMFTSAS
                     NAGYGKEDDSAVIKIFSGITLPGAKS"
     gene            23984..24781
                     /locus_tag="JN078_000259"
     CDS             23984..24781
                     /locus_tag="JN078_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HAY9039581.1"
                     /translation="MSAGQRKEQKLIPVERRQIILEMVAEKGIVSIAELTDRMNVSHM
                     TIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVQP
                     GSCIYLDAGTTTLAIAQHLIHMESLTVVTNDFVIANYLLDNSNCTIIHTGGAVCRENR
                     SCVGEAAATMLRSLMIDQAFISASSWSVRGLSTPAEDKVTVKRAIASASRQRVLVCDA
                     TKYGQVATWLALPLSEFDQIITDDGLPESASRALAKQDLSLLVAKNE"
     gene            complement(24832..25488)
                     /gene="pphB"
                     /locus_tag="JN078_000260"
     CDS             complement(24832..25488)
                     /gene="pphB"
                     /locus_tag="JN078_000260"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-serine/threonine phosphatase"
                     /protein_id="HAY9039582.1"
                     /translation="MPSTRYQKINAHHYRHIWVVGDIHGEYQLLQSRLHQLSFCPETD
                     LLISVGDNIDRGPESLDVLRLLNQPWFISVKGNHEAMELDAFATGDGNMWLASGGDWF
                     FDLNDSEQQEAIDLLLKFHHLPHIIEITNDIIKYVIAHADYPGDEYLFGKEIAESELL
                     WPVYRVQKSLNGELQQINGADYFIFGHMMFDNIQTFANQIYIDTGSPKSGRLSFYKIR
                     "
     gene            complement(25594..28155)
                     /gene="mutS"
                     /locus_tag="JN078_000261"
     CDS             complement(25594..28155)
                     /gene="mutS"
                     /locus_tag="JN078_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HAY9039583.1"
                     /translation="MSAIENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDA
                     KRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPATS
                     KGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEP
                     ADRETMAAELQRTNPAELLYAEDFAEMSLIEGRRGLRRRPLWEFEIDTARQQLNLQFG
                     TRDLVGFGVENAPRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRN
                     LEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDF
                     TAGLQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLETVDSAPVQA
                     LREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERL
                     EVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKE
                     YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLN
                     YTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYM
                     RQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILH
                     NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKME
                     DVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES
                     ISPNAAATQVDGTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKSLV"
     gene            28231..28365
                     /locus_tag="JN078_000262"
     CDS             28231..28365
                     /locus_tag="JN078_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9039584.1"
                     /translation="MIPELIISGEEANGEFLMLVPGKMLFCSFCVMLMKQVRKIASVE
                     "
     gene            28442..28795
                     /locus_tag="JN078_000263"
     CDS             28442..28795
                     /locus_tag="JN078_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide-stimulated promoter family
                     protein"
                     /protein_id="HAY9039585.1"
                     /translation="MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKR
                     LDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRP
                     VPELPEKYRPKKPRE"
     gene            complement(28832..30910)
                     /gene="flhA"
                     /locus_tag="JN078_000264"
     CDS             complement(28832..30910)
                     /gene="flhA"
                     /locus_tag="JN078_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase transcriptional activator
                     FlhA"
                     /protein_id="HAY9039586.1"
                     /translation="MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALA
                     DNAAIVLWQAQTQRASYYASREKDTPIKYEDETVLAHGPVRRILSRPDTLHCSYEEFC
                     ETWPQLVAGGLYPKFGHYCLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIV
                     SVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYF
                     DIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINL
                     HERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR
                     QIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVL
                     KQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL
                     FGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN
                     KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAF
                     TFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI
                     ALPEPETPPAATVVAQEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMK
                     RLGIDKSALI"
     gene            complement(30984..31994)
                     /gene="hypE"
                     /locus_tag="JN078_000265"
     CDS             complement(30984..31994)
                     /gene="hypE"
                     /locus_tag="JN078_000265"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311613.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation carbamoyl dehydratase
                     HypE"
                     /protein_id="HAY9039587.1"
                     /translation="MNNIQLAHGSGGQAMQQLINSLFMEAFANPWLAEQEDQARLDLA
                     QLVAEGDRLAFSTDSYVIDPLFFPGGNIGKLAICGTANDVAVSGAIPCYLSCGFILEE
                     GLPMETLKAVVTSMAETARTAGIAIVTGDTKVVQRGAADKLFINTAGMGAIPANIHWG
                     AQTLTAGDVLLVSGTLGDHGATILNLREQLGLDGELVSDCAVLTPLIQTLRDIPGVKA
                     LRDATRGGVNAVVHEFAAACGCGIEISESALPVKPAVRGVCELLGLDALNFANEGKLV
                     IAVERNAAEQVLAALHSHPLGKDAALIGEVVERKGVRLAGLYGVKRTLDLPHAEPLPR
                     IC"
     gene            complement(31991..33112)
                     /gene="hypD"
                     /locus_tag="JN078_000266"
     CDS             complement(31991..33112)
                     /gene="hypD"
                     /locus_tag="JN078_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HAY9039588.1"
                     /translation="MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGH
                     THAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRV
                     PGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQ
                     AKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDF
                     HRPLVVAGFEPLDLLQGVVMLVEQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCV
                     NGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPH
                     QCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQESEA"
     gene            complement(33112..33384)
                     /gene="hypC"
                     /locus_tag="JN078_000267"
     CDS             complement(33112..33384)
                     /gene="hypC"
                     /locus_tag="JN078_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 3 maturation protein HypC"
                     /protein_id="HAY9039589.1"
                     /translation="MCIGVPGQIRTIDGNQAKVDVCGIQRDVDLTLVGSCDENGQPRV
                     GQWVLVHVGFAMSVITEAEARDTLDALQNMFDVEPDVGALLYGEEK"
     gene            complement(33375..34247)
                     /gene="hypB"
                     /locus_tag="JN078_000268"
     CDS             complement(33375..34247)
                     /gene="hypB"
                     /locus_tag="JN078_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HAY9039590.1"
                     /translation="MCTTCGCGEGNLYIEGDEHNPHSAFRSAPFAPAARPKMKITGIK
                     APEFTPSQTEEGDLHYGHGEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFAAR
                     KQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQV
                     NTGKGCHLDAQMIADAAPRLPLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEG
                     EDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEG
                     MDQWLNWLETQRCA"
     gene            complement(34251..34601)
                     /gene="hypA"
                     /locus_tag="JN078_000269"
     CDS             complement(34251..34601)
                     /gene="hypA"
                     /locus_tag="JN078_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HAY9039591.1"
                     /translation="MHEITLCQRALELIEQQAAKHGAKRVTGVWLKIGAFSCVETSSL
                     AFCFDLVCRGSVAEGCKLHLEEQEVECWCETCQQYVTLLTQRVRRCPQCHGDMLQIVA
                     DDGLQIRRIEIDQE"
     gene            34813..36444
                     /gene="hycC"
                     /locus_tag="JN078_000270"
     CDS             34813..36444
                     /gene="hycC"
                     /locus_tag="JN078_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001274449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit 3"
                     /protein_id="HAY9039592.1"
                     /translation="MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHH
                     AMSCAPDKELCFVLFEHFRIYVTLADGFNSHTIEYYVETKEGKLWFALGRLGTLLLAI
                     ACWLLWQRYGTLDLRLLDMRMQQLPLGSDIWLLGVIGFGLLAGIIPLHGWVPQAHANA
                     SAPAAALFSTVVMKIGLLGILTLSLLGGNAPLWWGIVLLVLGMITAFVGGLYALMEHN
                     IQRLLAYHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLLNHSLFKSVLFL
                     GAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFF
                     KLSNSGAFVARLLGPLLAVGLAITGALAVMCMAKVYGVTFLGAPRTKEAENATCAPLL
                     MSVSVVALAICCVIGGVAAPWLLPMLSAAVPLPLEPANTTVSQPMITLLLIACPLLPF
                     IIMAICKGDRLPSRSRGAAWVCGYDHEKSMVITAHGFAMPVKQAFAPVLKLRKWLNPV
                     SLVPGWQCEGSALLFRRMALVELAVLVVIIVSRGA"
     gene            36447..37370
                     /gene="hycD"
                     /locus_tag="JN078_000271"
     CDS             36447..37370
                     /gene="hycD"
                     /locus_tag="JN078_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycD"
                     /protein_id="HAY9039593.1"
                     /translation="MSVLYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYR
                     DIIKLLGRQSVGPDASGWVFRLTPYVMVGVMLTIATALPVVTVGSPLPQLGDLITLLY
                     LFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNI
                     TDTVYHWPLSQSIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFG
                     VMKWGISLKQLVVLQMFVGVFIPWGQMETFTAGGLLLALVIAIVKLVVGVLVIALFEN
                     SMARLRLDITPRITWAGFGFAFLAFVSLLAA"
     gene            37388..39097
                     /locus_tag="JN078_000272"
     CDS             37388..39097
                     /locus_tag="JN078_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase large subunit"
                     /protein_id="HAY9039594.1"
                     /translation="MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPE
                     VVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWVTVRVEVDANKPEYP
                     SVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPA
                     PTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHR
                     GMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILL
                     EVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR
                     RDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGP
                     MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLD
                     NLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT
                     LRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNS
                     PLK"
     gene            39107..39649
                     /gene="hycF"
                     /locus_tag="JN078_000273"
     CDS             39107..39649
                     /gene="hycF"
                     /locus_tag="JN078_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycF"
                     /protein_id="HAY9039595.1"
                     /translation="MFTFIKKVIKTGTATSSYPLEPIAVDKNFRGKPEQNPQQCIGCA
                     ACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWK
                     KEDFLQQSRFALCNCRVCNRPFAVQKEIDYAIALLKHNGDSRAENHRESFETCPECKR
                     QKCLVPSDRIELTRHMKEAI"
     gene            39649..40416
                     /gene="hycG"
                     /locus_tag="JN078_000274"
     CDS             39649..40416
                     /gene="hycG"
                     /locus_tag="JN078_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycG"
                     /protein_id="HAY9039596.1"
                     /translation="MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVD
                     CGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQS
                     APDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL
                     GLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDFLTQ
                     LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEVRIR"
     gene            40413..40823
                     /locus_tag="JN078_000275"
     CDS             40413..40823
                     /locus_tag="JN078_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HycH family protein"
                     /protein_id="HAY9039597.1"
                     /translation="MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDC
                     LEAALTCPWDEYLAWIATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAA
                     QTSQQQEWSTMLLSMLHDIHQENAIYLMVRRLRD"
     gene            40816..41286
                     /gene="hycI"
                     /locus_tag="JN078_000276"
     CDS             40816..41286
                     /gene="hycI"
                     /locus_tag="JN078_000276"
                     /EC_number="3.4.23.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation peptidase HycI"
                     /protein_id="HAY9039598.1"
                     /translation="MTDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPE
                     NDIVAIRELRPTRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLK
                     EDIGEVIFLGIQPDIVGFYYPMTQPIKDAVETVYQRLEGWEGNGGFAQLAVEEE"
     gene            complement(41445..42869)
                     /locus_tag="JN078_000277"
     CDS             complement(41445..42869)
                     /locus_tag="JN078_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HAY9039599.1"
                     /translation="MSVFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMA
                     VKLGLEKRFQLRDDEFYPSHEATDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGD
                     EVTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKLVEFFSRY
                     ARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHQLVASA
                     LAAKIAHEVNPQNQVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPA
                     YSARVFREKGVTIDKALGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSL
                     RNPYLQVSDWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGAKDELAANGEINDDYR
                     ISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGT
                     LTRTRKKSFWWYKKVIASNGEDLE"
     gene            complement(42878..44335)
                     /gene="ascF"
                     /locus_tag="JN078_000278"
     CDS             complement(42878..44335)
                     /gene="ascF"
                     /locus_tag="JN078_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose/arbutin/salicin transporter
                     subunit IIBC"
                     /protein_id="HAY9039600.1"
                     /translation="MAKNYAALARSEIAALGGVDNISAVTHCMTRLRFVIKDDQLIDS
                     PTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLPGDMQPAQPVGKPKLTPRRI
                     GAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFF
                     LPLMVAASADIKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFALIPVTAVKYT
                     YTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGS
                     AISALVYSIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAETGKEGMVMPSE
                     IGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIAS
                     LISGFICGAVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFIL
                     TLLLGFEDIPVEEAAAQARKHQSVQPTVAKEVSLN"
     gene            44595..45605
                     /locus_tag="JN078_000279"
     CDS             44595..45605
                     /locus_tag="JN078_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417194.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HAY9039601.1"
                     /translation="MTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESG
                     YRPNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHS
                     AEEERQAIQYLLDLRCNAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVW
                     CDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIA
                     NGKWTPASGAEGVETLLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFD
                     DIAIAPYIVPALSSVKIPVTEMIQEIIGRLIFMLDGGDFSPPKTFSGKLIHRDSLIAL
                     SR"
     gene            45754..46281
                     /gene="hydN"
                     /locus_tag="JN078_000280"
     CDS             45754..46281
                     /gene="hydN"
                     /locus_tag="JN078_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport protein HydN"
                     /protein_id="HAY9039602.1"
                     /translation="MNRFIIADASKCIGCRTCEVACVVSHQENQDCASLTPETFLPRI
                     HVIKGVNISTATVCRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYG
                     AMEVVVRPVIRNSGAGLNVRADKAEANKCDLCNHREDGPACMAACPTHALICVDRNKL
                     EQLSAEKRRRTALMF"
     gene            46434..48686
                     /gene="hypF"
                     /locus_tag="JN078_000281"
     CDS             46434..48686
                     /gene="hypF"
                     /locus_tag="JN078_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HAY9039603.1"
                     /translation="MAKNTSCGVQLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGD
                     GVEVRLREDPETFLVQLHQHCPPLARIDSVEREPYIWSQLPTEFTIRQSAGGAMNTQI
                     VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCP
                     ACDKEYRDPLDRRFHAQPVACPECGPHLEWVSHGEHAEQEAALQAAIAQLKMGNIVAI
                     KGIGGFHLACDARNSNAVATLRARKHRPAKPLAVMLPVADGLPDAARQLLTTPAAPIV
                     LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISN
                     EQALADLQGIADGFLIHNRDIVQRMDDSVVRESGEMLRRSRGYVPDALALPPGFKNVP
                     PVLCLGADLKNTFCLVRGEQAVLSQHLGDLSDDGIQMQWREALRLMQNIYDFTPKYVV
                     HDAHPGYVSSQWAREMNLPTQTVLHHHAHAAACLAEHQWPLDGGDVIALTLDGIGMGE
                     NGALWGGECLRVNYRECEHLGGLPAVALPGGDLAAKQPWRNLLAQCLRFVPEWQNYPE
                     TASVQQQNWSVLARAIERGINAPLASSCGRLFDAVAAALGCAPATLSYEGEAACALEA
                     LAASCHGVTHPVTMPLVDNQLDLAAFWQQWLNWQAQVNQRAWAFHDALAQGFAALMRE
                     QATMRGITTLVFSGGVIHNRLLRARLAHYLADFTLLFPQSLPAGDGGLSLGQGVIAAA
                     RWLAGEVQNG"
     gene            complement(48814..49947)
                     /gene="norW"
                     /locus_tag="JN078_000282"
                     /pseudo
     CDS             complement(48814..49947)
                     /gene="norW"
                     /locus_tag="JN078_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417191.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavorubredoxin reductase NorW"
     gene            complement(49944..51383)
                     /gene="norV"
                     /locus_tag="JN078_000283"
     CDS             complement(49944..51383)
                     /gene="norV"
                     /locus_tag="JN078_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic nitric oxide reductase
                     flavorubredoxin"
                     /protein_id="HAY9039604.1"
                     /translation="MSIVVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEK
                     NVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYC
                     TANAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTGDA
                     VLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNL
                     PVDMIATSHGVVWRDNPTQIVELYLKWAADYQEDRITIFYDTMSNNTRMMADAIAQGI
                     AETDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGLR
                     FRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDQDALELCREHGREI
                     ARQWALAPLPQSTVNKVVKEETSATTTADLGPRMQCSVCQWIYDPAKGEPMQDVAPGT
                     PWSEVPDNFLCPECSLGKDVFEELASEAK"
     gene            51570..53084
                     /gene="norR"
                     /locus_tag="JN078_000284"
     CDS             51570..53084
                     /gene="norR"
                     /locus_tag="JN078_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311592.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide reductase transcriptional regulator
                     NorR"
                     /protein_id="HAY9039605.1"
                     /translation="MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALL
                     RYDSRQFIPLAIDGLAKGVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI
                     PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA
                     LLIEQLESQNMMPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG
                     TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE
                     MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLREE
                     VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRLGLSRVVLSAGAR
                     NLLQHYRFPGNVRELEHAIHRAVVLARATRNGDEVILEAQHFAFPEVTLPPPEAAAVP
                     VVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGMKD"
     gene            complement(53081..54046)
                     /gene="gutQ"
                     /locus_tag="JN078_000285"
     CDS             complement(53081..54046)
                     /gene="gutQ"
                     /locus_tag="JN078_000285"
                     /EC_number="5.3.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311591.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose-5-phosphate isomerase GutQ"
                     /protein_id="HAY9039606.1"
                     /translation="MSEALLNAGRQTLMLELQEASRLPERLGDDFVRAANIILHCEGK
                     VVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGA
                     KELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNT
                     LMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASV
                     MDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTTGGTTL
                     QAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQAGII"
     gene            complement(54039..54812)
                     /gene="srlR"
                     /locus_tag="JN078_000286"
                     /gene_synonym="gutR"
     CDS             complement(54039..54812)
                     /gene="srlR"
                     /locus_tag="JN078_000286"
                     /gene_synonym="gutR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucitol operon DNA-binding transcriptional
                     repressor SrlR"
                     /protein_id="HAY9039607.1"
                     /translation="MKPRQRQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILE
                     HAGTVIRTYGGVVLNKEESDPPIDHKTLINTHKKELIAEAAVSFIHDGDSIILDAGST
                     VLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKLASFHGQLAENA
                     FEHFSFDKLFMGTDGIDLNAGVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNV
                     VCSLESVDKLITDAGIDPAFRQALEEKGIDVIITGESNE"
     gene            complement(54879..55237)
                     /gene="gutM"
                     /locus_tag="JN078_000287"
                     /pseudo
     CDS             complement(54879..55237)
                     /gene="gutM"
                     /locus_tag="JN078_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417186.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GutM"
     gene            complement(55342..56121)
                     /gene="srlD"
                     /locus_tag="JN078_000288"
     CDS             complement(55342..56121)
                     /gene="srlD"
                     /locus_tag="JN078_000288"
                     /EC_number="1.1.1.140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbitol-6-phosphate dehydrogenase"
                     /protein_id="HAY9039608.1"
                     /translation="MNQVAVVIGGGQTLGAFLCHGLVAEGYRVAVVDIQSDKAANVAQ
                     EINAEYGESMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYSAGIAKAAFISDFQL
                     GDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFG
                     GVGLTQSLALDLVEYGITVHSLMLGNLLKSPMFQSLLPQYATKLGIKPDQVEQYYIDK
                     VPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQVMF"
     gene            complement(56125..56496)
                     /gene="srlB"
                     /locus_tag="JN078_000289"
                     /gene_synonym="gutB"
     CDS             complement(56125..56496)
                     /gene="srlB"
                     /locus_tag="JN078_000289"
                     /gene_synonym="gutB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIA"
                     /protein_id="HAY9039609.1"
                     /translation="MTVIYKTTITRIGASATDALSDQMLITFREGAPADLEEYCFIHC
                     HGELKGALHPGLQFTLGQHRYPVTAVGSVAEDNLRELGHVTLRFDGLNEAEFPGTVHV
                     AGPVPDDIAPGSVLKFESVKE"
     gene            complement(56507..57466)
                     /gene="srlE"
                     /locus_tag="JN078_000290"
                     /gene_synonym="gutE"
     CDS             complement(56507..57466)
                     /gene="srlE"
                     /locus_tag="JN078_000290"
                     /gene_synonym="gutE"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIB"
                     /protein_id="HAY9039610.1"
                     /translation="MTRIRIEKGTGGWGGPLELEATPGKKIVYITTGTRPAIVDKLAQ
                     LTGWQAIDGFKEGEPAEAEIGVAVIDCGGTLRCGIYPKRRIPTINIHSTGKSGPLAQY
                     IVEDIYVSGVKEENITVVGDATPQPSSVGRDYDTSKKITEQSDGLLAKVGMGMGSAVA
                     VLFQSGRDTIDTVLKTILPFMAFVSALIGIIMASGLGDWIAHGLAPLASHPLGLVMLA
                     LICSFPLLSPFLGPGAVIAQVIGVLIGVQIGLGNIPPHLALPALFAINAQAACDFIPV
                     GLSLAEARQDTVRVGVPSVLVSRFLTGAPTVLIAWFVSGFIYQ"
     gene            complement(57463..58026)
                     /gene="srlA"
                     /locus_tag="JN078_000291"
                     /gene_synonym="gutA"
     CDS             complement(57463..58026)
                     /gene="srlA"
                     /locus_tag="JN078_000291"
                     /gene_synonym="gutA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIC"
                     /protein_id="HAY9039611.1"
                     /translation="MIETITHGAEWFIGLFQKGGEVFTGMVTGILPLLISLLVIMNAL
                     INFIGQHRIERFAQRCAGNPVSRYLLLPCIGTFVFCNPMTLSQGRFMPEKYKPSYYAA
                     ASYSCHSMNGLFPHINPGELFVYLGIASGLTTLNLPLGPLAVSYLLVGLVTNFFRGWV
                     TDLTTAIFEKKMGIQLEQKVHLAGATS"
     gene            58282..59367
                     /gene="mltB"
                     /locus_tag="JN078_000292"
     CDS             58282..59367
                     /gene="mltB"
                     /locus_tag="JN078_000292"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase B"
                     /protein_id="HAY9039612.1"
                     /translation="MFKRRYVTLLPLFVLLAACSSKPKPTETETTTGTPSGGFLLEPQ
                     HNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTT
                     SVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIG
                     VETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFA
                     GAMGYGQFMPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAVMAN
                     GQAPGLPNGFKTRYSISQLATAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYT
                     ITRYNHSTHYAMAVWQLGQAVALARVQ"
     gene            59512..60009
                     /gene="pncC"
                     /locus_tag="JN078_000293"
     CDS             59512..60009
                     /gene="pncC"
                     /locus_tag="JN078_000293"
                     /EC_number="3.5.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide-nucleotide amidase"
                     /protein_id="HAY9039613.1"
                     /translation="MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAG
                     SSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSEPVVVEMVIGALKAARADYAVSI
                     SGIAGPDGGSEEKPVGTVWFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQ
                     FLQNT"
     gene            60089..61150
                     /gene="recA"
                     /locus_tag="JN078_000294"
     CDS             60089..61150
                     /gene="recA"
                     /locus_tag="JN078_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HAY9039614.1"
                     /translation="MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTG
                     SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP
                     IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
                     GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF
                     YASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELV
                     DLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNS
                     TPDFSVDDSEGVAETNEDF"
     gene            61393..61893
                     /gene="recX"
                     /locus_tag="JN078_000295"
     CDS             61393..61893
                     /gene="recX"
                     /locus_tag="JN078_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HAY9039615.1"
                     /translation="MTESTSRRPAYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKN
                     GPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGIS
                     REATEKAMRECDIDWCALARDQATRKYDEPLPTVFSEKVKIQRFLLYRGYLMEDIQDI
                     WRNFAD"
     gene            62021..64651
                     /gene="alaS"
                     /locus_tag="JN078_000296"
     CDS             62021..64651
                     /gene="alaS"
                     /locus_tag="JN078_000296"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HAY9039616.1"
                     /translation="MSKSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGM
                     NQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDY
                     FKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDN
                     KGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQ
                     FNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDL
                     SNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKL
                     VGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDG
                     ETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREASGFGADYNAMI
                     RVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGD
                     KGELKDANFSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSA
                     THLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNL
                     PIETNIMDLEAAKAKGAMALFGEKYDERVRVLSMGDFSTELCGGTHASRTGDIGLFRI
                     ISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTR
                     QLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLG
                     STIIVLATVAEGKVSLIAGVSKDVTDRVKAGELIGMVAQQVGGKGGGRPDMAQAGGTD
                     AAALPAALASVKGWVSAKLQ"
     gene            64886..65071
                     /gene="csrA"
                     /locus_tag="JN078_000297"
     CDS             64886..65071
                     /gene="csrA"
                     /locus_tag="JN078_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001774971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HAY9039617.1"
                     /translation="MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHR
                     EEIYQRIQAEKSQQSSY"
     gene            65387..65479
                     /locus_tag="JN078_000298"
     tRNA            65387..65479
                     /locus_tag="JN078_000298"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:65421..65423,aa:Ser,seq:gct)
     gene            65483..65559
                     /locus_tag="JN078_000299"
     tRNA            65483..65559
                     /locus_tag="JN078_000299"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:65517..65519,aa:Arg,seq:acg)
BASE COUNT        15426 a        16805 c        17975 g        15540 t
ORIGIN      
        1 taatgaatca ctctggtccg gtgatttaat cgggtcagaa gaaccggatg aacaagcttt
       61 cagccagggt tgtgcggcct agtttgccga cagtaacaag aaggcgttgc tggctgaaat
      121 tggcgtcggc accctggatc aggcgatgat ggcagtgatg ccgtttaaac ataataatct
      181 gcggcttctg gggctgagta acaaaatcct gctggctgat gagatccacg cctgtgacgc
      241 ttatatgtcg tgcattcttg aagggctgat cgagcggcag gcgcgtggcg gaaacagcgt
      301 tattttgctt tctgctacgt tatctcaaca gcagcgcgac aaactcgtcg ccgcctttgc
      361 gcgtggtgca gagggccagc aagaagcccc actcctggga aaagatgatt acccctggct
      421 gacgcatgtc acgaaaaccg atgtacattc gcaccgggta gcgacgcgca aagaagttga
      481 acgtagcgtg agcgtgggtt ggctccatag tgaacaagag tgtattgcgc gtatcgaatc
      541 ggcggtaagt caggggaaat gcatcgcctg gattcggaat tctgttgatg acgctattca
      601 ggtgtatcgt cagctgcttg cccgcggcgt cattcctgct tccagccttt cactttttca
      661 tagccgcttt gcttttagcg atcgccagcg aattgaaacg gaaacgctgg cacgctttgg
      721 taaatattgt agtttacaga gagcggctca agtcattgtt tgtacacaag taattgaaca
      781 aagcgtggat attgacctgg acgaaatgat ctccgacctg gcccccattg atttgctaat
      841 ccagcgagcg gggcgattac agcggcatat ccgcgatatt aatggtcagt taaagcgtga
      901 cggaaaagac gagcgttccc cccctgaatt gctgattctg gcccccgtct gggatgacgc
      961 tcctggtgac gaatggttcg gcagtgccat gcgtaacagt gcatatgtct atcccgatca
     1021 tgggcgaatc tggctgacgc agcgtgtgct gcgtgagcaa ggcgctattc agatgccgca
     1081 cgcagcccgg cttcttattg aatcagttta cggtgaggac gtggtaatgc cggaaggatt
     1141 tgcccgcagc gagcaggagc aagtgggcaa atattactgt gatcgcgcaa gggctaaaaa
     1201 gtatgtgctg aacttcaggc tcggctatgc cgccaatatc aacgattacc ttccggaaaa
     1261 actgtcgaca cgtctggctg aagagtctgt ttccctgtgg ctggctacct gtattgacgg
     1321 tgtggtgaag ccttatgcca ccggtgctca cgcatgggaa atgagcgttg tcagagtgcg
     1381 ccgaagctgg tggaaaaaac atcgggatga gttttcttta ctggaagggg atgcgttcag
     1441 gcagtggtgc gttgaacagc ggcaagatcc ggaaatggca aacgtgattt tagtcaccga
     1501 tgacgaaagt tgcgggtatt cggccaggga gggattgatt ggcaaagttg gttgagatgt
     1561 ctgcgacaag actctctgaa tagttgatat acagaaaagg atggaaggat ggacaaccga
     1621 cctgggatgg tcttttttac gagaggatgc gtatgaactc gttttcactt ctgacaaccc
     1681 cgtggttgcc cgttcgtttt aaagacggaa cgacaggcaa actggcacca gtcgatctgg
     1741 ctgatgaaaa tgttgtcgat atcgctgcgc cgcgggcaga tctccagggg gcggcctggc
     1801 agtttttgct ggggctacta caaaccagct tcgcgccaaa agatcaacgt agttgggatg
     1861 atatctggga agacggactg gaagctgaaa agctaaggga agcattgctg tctttagaac
     1921 atgcttttca gtttgggcca gattcccctt catttatgca ggattttgat gaattaaaag
     1981 ttaaggcaac ttttattgct tcgcttcttc ctgacgcacc aggaaaacaa acaaaagaac
     2041 gaaatacaga ccattttatt aagcgagaca caactcagca tctgtgcctg cattgtgtgc
     2101 ctttagcgct tttttcaatc cagttgaatg cacctatagg tggacgcggt tactatcctg
     2161 ggctacgtgg cggagggcct ctgacgacac ttatagaatt gctggagtat cagggcaatc
     2221 aacaaacccc tttgtggcga aagctgtggc taaacgtaat gccgcaagat gaagccgatt
     2281 tacctttacc aaaaaccttt gatgacctgg tctttccttg gcttgcaccg acgcgtacca
     2341 gcgaactgga cggtgctgtg gtaacggatg aacaagtcaa taaacttcag gcctactggg
     2401 gaatgccacg acgtatacgt attgatttta agacaacctc aataggtaac tgcgacattt
     2461 gcggtaggca gagcgatgct cttttgggct tgatgtcact caaaaactat ggtgttcaat
     2521 acgtcatgtg gcgccatcct ctaacacctt accgtctgcc gcttaaagag ggtggagatt
     2581 tttactcagt taaaccacaa cctggtggtt taatctggcg cgactggtta ggcctcatag
     2641 aggtaggtaa ctcaaaaaac aatactgaac tccccgcaca ggtcgtgaaa cttttgaatg
     2701 ccagcaatct aaagcagaca agggtgggct tatggggatt tggttttgat tttgaagata
     2761 tgaaggttcg ttgttggtat gaacaccatt tcccgctgtt gttaaacaaa aaagaagacc
     2821 taatacctaa gttgcgtctg gcagcgcaag cggcatcaca cattctaagc ttgttacacc
     2881 gagcgttgaa agaagcatgg ttctctgaga agaaaaccac aaagcttgat ttcggttttg
     2941 tggatattga cttctggaac aaaactcagc atcgattcct gagattagtg cgcaaaattg
     3001 aagaaggtca ggatccggac gaattactca gtaaatggca aaaggaaatg tggttattcg
     3061 cgcgtcagga ttttgacgat cgtgtcttta ccaatccata tgagcccgtt gatttggaac
     3121 gcgtcatgac cgcacgcaag aaatatttta caacatcagc ggagaagcaa aatgctaacg
     3181 ccgccaggga gaaaaagcag gaggctgctg aatgagtatt gtaaaagatg agcataaagt
     3241 tgcgctgcgt aaatggcatg aagagttgca ggataaacgc ggcgagcgtg ccagtctgcg
     3301 gcgtagtacg acggttaatg atgtttgtct gacggatgga tttcgcctgt ttcttaagaa
     3361 cagacaaata aagtggcagg atgaacccga gtggcgtatc accgcactag cgctgatagc
     3421 agcagttagc gccaatgtta aagctattga cgaacggcag ccttttgccg cgcaactggc
     3481 ggcggtaatg aaaaaggggc ggtttactcg tttgttggca gtaaaaacgc cggatgattt
     3541 attgcggcag ttacgccgtg cggtcaaatt attaaacggt tccgtcaatc ttgactctct
     3601 agaagagggg gtcttccgct ggtgccagga gagcgatgac ctgctcaatc atcaccgccg
     3661 ccagcagcga ccaacagaat ttatccgtat ccgctgggcg ctgggcgctg ggcgctgggc
     3721 gctgggcgct gggcgctgga atattaccag gctggcgacg ccgataacga acaaaattaa
     3781 taaaggacta tctcatgaca acatttattc agcttcattt gttaaccgct taccctgctg
     3841 ccaatcttaa ccgtgatgat tccggctctc cgaaaactgt gattctgggt ggagcaacgc
     3901 gtctgcgcgt ttcctcgcaa agtctgaagc gtgcttggcg cacttctgaa ctttttgaac
     3961 aggcgctggc gggccatatt ggtgttcgta gcgggcgtat tgcgcgtgag gcggcaacta
     4021 tcctgattga gaaaggaatc gaagataaaa aagccatcga atgggcagta gagatagccg
     4081 attatcttgg gaaagccaaa aaagacaaaa aacaaaaaaa cgacaaaaaa ccaaaagatc
     4141 cgctcactag cgccgaaact gaacagctcg tccatatcag cccggcagaa tttgacgccg
     4201 taaaagcgct ggcccatcaa ctggcagaag aaaagcgcgc gccaaaagag aaagatctcg
     4261 ctttgttacg taaagaccgt atggcggtag atatcgctat gtttggtcgt atgctggcga
     4321 aaaaacccgg gtttaatgta gaagccgcct gccaggtcgc gcatgcgttt ggtgtcagtg
     4381 aaacgattgt cgaaaatgat tttttcaccg ccgtagatga tttacgccag gcttctgaag
     4441 atgccggtgc cggtcatgta gatgaaaccg gattcggttc tgcgctgttc tacacctata
     4501 tcttatctgc attgataaag atctgctggt agaaaacctc ggcggtgacg aagcgttagc
     4561 taatcagacc atacgcgcct ttacggaagc cgcgcttaaa gtctccccaa ccggtaaaca
     4621 aaacagcttt gccagccggg cttatgcctc ctgggcgctg gcagaaaaag gcaccgatca
     4681 accgcgttct ctggcggcag ctttctatga acccattaat ggcacccgtc agttagaggt
     4741 ggcggtgcag cgtattacaa ctcttcgcga aaatatgaat acggtctacg aacagaagac
     4801 cgattacgca agttttgacg tgatgaacaa acagggaagc atgaaggacg tgctggactt
     4861 tatctgcgcg taaggggcgg cttatgagcc aatatctgat ttttcagctt catgggccga
     4921 tggcatcctg gggcgtcgat gcccccggcg aagtgcgtca tacccatgaa ctgccttcgc
     4981 tctcagcatt gctggggctg ctggctgccg gggtagggat ccggcgtgat gataccgaac
     5041 gcttaaacgc gtttaatcgc cactattcac tggtggtttg cgccagccgt aacccgcgct
     5101 gggcacggga ttatcacacg gtccagatgc caaaagaggt gcgtaaagca cgttatttca
     5161 gccgtcgcga agagttgagc gaccctgagc ttttgagcgc gattatctcc cggcgcgact
     5221 actacaccga tgcctggtgg atggtggcgg tggcaacaac agccgatgcg ccttacagcc
     5281 tcgaacagtt gcaggacggt ttacgccatc cagtttttcc gctttatctg gggcgaaaaa
     5341 gtcatccgct ggcattacct cttgcgccgt tactgctcga aggcaacgcg tgtgatgcct
     5401 tatgtaatgc ataccaacag tatcaggatc atttccataa actgaaagtt tcactcccga
     5461 aacttcagga tgaatgctgg tgggaaggga aacacgacgg cctggtcgcg agcaaaatat
     5521 tacgccgccg ggatgttcct ttaaatcgtc agcagtggct gtttggggaa cgcaccgtca
     5581 atcaggggcc gtggctcagc aaggaggaac catgtacctc tcaagaataa ccttacatac
     5641 cggccagctt tcgcctgcgc agttgctgca tctggtggat cgcggtgaat atgtgatgca
     5701 tcagtggctg tgggatctct tccctagcgg caaagaaagg caatttcttt atcgtcggga
     5761 agaactccag ggcgcgtttc gcttttttgt actgtcgcag gaacgcccgg cggaaagtga
     5821 tacgttcacc atagaatgcc ggtcatttgc gcccgagctg tgtaccggac aacaactttg
     5881 tttcaacctg cgggcgaatc caacaatctg taaagcgggc aagcgccacg atctgctgat
     5941 ggaggcgaaa cggcaggtga gggggcaggc ggaaggaagt gatgtctggt tgcatcaaca
     6001 acaggcggcg ctggactggc tggcagcgca gggggagaga agtggtttta cactgctgga
     6061 tatctcggtt gatgcctacc gacaacagca actgcggcgg gaaaactccc ggcaactgat
     6121 ccagttcagt agcgtggatt atacggggat gcttacggtc accgatcccg ggttatttct
     6181 gcaacgtctc agtcaggggt atggcaaaag ccgcgcgttc ggctgtggtc tgatgctgat
     6241 caaacccgga gcagaggcgt gacgtttgta ccgctgagcc cgatcccgtt aaaagatcgc
     6301 acctctatga tcttcctcca gtacgggcaa atcgacgtac tggacggcgc tttcgtgctg
     6361 atcgataaaa ccgggatccg cacgcacatt ccggtgggat cggtcgcctg cattatgctc
     6421 gaaccgggaa cgagagtttc ccacgcggcg gtgcatctgg ccgccacggt ggggacgcta
     6481 caggtctggg tcggtgaagc gggtgttcgc gtctactctt ccggacaacc cggtggggcg
     6541 cgtgctgata agttactcta ccaggcaaag ctggctttaa cggaagatct acgtctgaag
     6601 gtggtgcgca aaatgtatga attacgtttt cgtgagccac cgccagctcg ccgttcagtg
     6661 gagcagctac gtggaattga gggatctcgc gttcgccaga cgtatgcatt actggcgaaa
     6721 caatatggtg tgaaatggaa tggtcgcaaa tacgatccta aagactggga aaaaggcgat
     6781 gttgtgaatc gctgcatcag tgctgctaca tcatgtctgt acggtatatc tgaagcggca
     6841 gtattagccg cgggatatgc gcccgctatt gggtttatcc atagtggcaa accgctttca
     6901 tttgtttatg acatagccga tatcattaaa tttgattcgg ttgtaccaaa ggcatttgaa
     6961 atagcggcga ggcaacccgc agaacctgat aaagaagtca gattagcctg tcgtgatatt
     7021 ttccgtagca ctaagttaac gggcaaatta ataccgttaa ttgaggaagt ccttgccgca
     7081 ggtgaaattg aaccgccaca acctgcgccg gatatgttac cgccagccat ccccgaacct
     7141 gaaacgttgg gcgatagcgg tcatcgagga cgcggctgat gagcatggtc gtggttgtta
     7201 cagaaaatgt cccgccacgc ttacgtggac ggctcgcaat ctggctactg gaagtgcgtg
     7261 ccggtgtgta tgttggtgat acatcaaaac gtattcggga gatgatctgg cagcaaatta
     7321 cccaactggc tggttgcgga aatgtggtga tggcctgggc gaccaatacc gagtcgggtt
     7381 ttgaatttca gacctgggga gaaaacagac gtattccggt ggatttggat gggttacgtt
     7441 tggtttcttt tcttcctgtt gataatcaat aagttatccg ttctttaaaa ataaggaaat
     7501 gttttaattt agttggtaga ttgttgatgc ggaataaatt tgtttaaaaa cagttatgta
     7561 tgcttagtgt gttccccgcg ccagcgggga taaaccgggc gcactggatg cgataatgga
     7621 tatcacttag aattccccgc ccctgcggta gaactcccag ctcccatttt caaacccatc
     7681 aagacgcctt cgccagctcc ttcaccaacg gtagcattat ccgcataacg tcacggcagc
     7741 gacgttctat tcttccagga agtgccttat caatatgctg ttgattatcc agtcttacgt
     7801 catgccagct atttcccgca gggaatgcgg ctgtttttgc gcgttgctga taaccatcct
     7861 tattcccaag attccagtta gtcgcttcca ccgaaagtac agcaatgccc gctttgtcga
     7921 atatttctgc gtcattacaa cacccagtgc ctttcggata atttttattc aaccccggat
     7981 tggtcgttgc ggctattccg tgactgcgcg caattgccag cgccctgtcg cgcgttaatt
     8041 tccttactgc ttcaggggtt tttacaccgc tgttgaaata caatttatcg ccaacaatta
     8101 agttatcgag attaatcacc agcagcgtat ttttcttttc ggtgtcactc atccgcttga
     8161 gtaaattctc agcgcctaat ttcccttcct cttcgccgct ggtcgccaca aatcgaatac
     8221 catactcggt aggcgtattt ttcaggcgtt ctgccaattc cagcatgaca cctaaacctg
     8281 cggcgttatc atccattcct tgtaacgtca gcccgccgag attggcatcg gcgtcagcat
     8341 cgctcagcgg ggcgtaagta tccagatgcg ccataatgat gatctgctgc ggcgctttgc
     8401 cttcatgagc ggcaatcacc gtacttcccg tcacgttatg ccagctctta cgattatcgc
     8461 gggcggtata aatataccga ctattaaatg tccgaatatc actgcgataa cccatttgct
     8521 gaaactgttg gcgaatataa tcggcagata acatttctgc aggagttccg gtcatgcgtc
     8581 ccggaaagaa agtagcaata tgtcgtgcct gagtattagc aaaatcgcca ggtttaggtg
     8641 acgaggcgtg tacggggaga ataaagcata cgccgagcgc cagggcagcg gtacggtggc
     8701 gcaatgcgga aaacatagtg agtccttaaa taccatgcaa atttttttac cgccatagta
     8761 tgaaactgcc gctgcgctaa aacaatttca aatcttccta aacgcccgaa atccggtgcc
     8821 ttaagcactt tttgatatta gctttgccaa atcgttattc cgttaaggaa ctactcattc
     8881 taattggtaa tttcattcgt tctcttacgc tccctatagt cgaaacatct gatggcaaga
     8941 aaatagcggt attgcaaagg aacggttatg gctcaaaaac gacttactca cctgcggcaa
     9001 ctggaggcgg aaagcatcca cattattcgc gaggtggcgg cagaattctc aaatccggtg
     9061 atgctctact ctatcggtaa agattccagc gtcatgctgc atctggcgcg caaggcgttt
     9121 tatccaggta cgctgccttt cccgttgctg catgtcgata ccggctggaa attccgcgag
     9181 atgtatgagt tccgcgatcg tactgctaaa gcctacggct gcgagctgct ggtgcataaa
     9241 aacccggaag gcgtggcgat ggggattaat ccattcgtac acggcagcgc gaaacatacc
     9301 gatattatga aaactgaagg cctgaaacag gcgctgaaca aatacggttt tgatgccgcc
     9361 ttcggtggtg cgcgccgtga tgaagagaaa tcccgcgcta aagagcgaat ctactctttc
     9421 cgtgaccgct tccatcgctg ggatccgaaa aatcagcgcc cggagctgtg gcacaactac
     9481 aacgggcaaa ttaacaaagg tgaaagcatc cgcgtcttcc cgctctctaa ctggaccgag
     9541 caggatatct ggcaatacat ctggctggaa aatatcgaca ttgtgccact gtatctcgct
     9601 gcggaacgtc cggttctgga acgcgacggt atgttgatga tgattgatga caaccgtatc
     9661 gacctgcaac cgggcgaagt gattaaaaaa cggatggtgc gtttccgtac gctgggctgc
     9721 tggccgctga ccggtgcggt ggagtcaaat gcacaaacac tgccggagat catcgaagag
     9781 atgctggttt ctaccaccag tgaacgtcag ggccgcgtga ttgaccgcga ccaggcgggg
     9841 tctatggagc tgaaaaaacg tcaggggtat ttttaagatg aacaccgcac ttgcacaaca
     9901 aatcgccaat gaaggcggcg tcgaagcctg gatgattgcg caacaacata aaagcctgct
     9961 gcgttttctg acctgtggta gcgtcgatga cggcaaaagt accctgattg gtcgcctgct
    10021 gcacgatacc cgccaaatct acgaagatca gctctcatcg ctgcataacg acagtaagcg
    10081 tcacggcacc cagggcgaaa agctggatct ggcactgctg gtggacggcc tgcaagctga
    10141 gcgcgaacag ggcatcacca ttgacgtggc ttaccgttat ttctctaccg agaagcgtaa
    10201 atttattatc gccgacaccc cagggcacga gcagtacact cgcaatatgg caactggcgc
    10261 atcgacatgt gaactggcga tcttactgat cgatgcccgt aaaggcgtgc tcgatcaaac
    10321 ccgtcgtcac agttttatct ccacactgtt ggggatcaaa catctggtcg tggcgatcaa
    10381 caaaatggat ctggtggatt acagtgaaga gacgttcacc catattcgtg aagattattt
    10441 gacctttgcc gggcagctgc cgggtaatct ggatatccgc tttgtgccgc tctctgcact
    10501 ggaaggcgac aacgtggcat cgcaaagtga aagtatgtcg tggtacagcg gtccgacact
    10561 gctcgaagtg ctggaaaccg tggagatcca gcgagtggtg gatgcccagc caatgcgctt
    10621 cccggtgcag tacgttaatc gcccgaatct cgattttcgt ggctacgccg gaacgctggc
    10681 atccggtcgc gtggaagtcg ggcaacgtgt caaagcgctg ccctctggtg tggaatcaaa
    10741 cgtcgcgcgg atcgtgactt ttgatggtga tcgcgaagaa gcctttgccg gagaagcgat
    10801 caccctggtg ctgacggatg agatcgacat cagccgtggc gatctgctgc tggcggcaga
    10861 cgaagcgtta ccggcggtgc cgagcgcgtc ggtggatgtg gtatggatgg cggaacagcc
    10921 gctttccccg ggccagagtt acgacatcaa aattgccggt aagaagacgc gcgcgcgtgt
    10981 tgatggcatt cgctatccgg ttgatattaa taaccttacc cagcgtgaag ttgaaaacct
    11041 gccactgaat gggatcggcc tcgtggatct cacttttgac gagccgctgg tgttagatcg
    11101 ttatcaacaa aatccggtga cgggtgggct gatttttatc gatcgcctga gcaacgtgac
    11161 tgttggtgcc ggtatggtgc atgagccgaa aaacgaggcc gccgttgcgt catctgaatt
    11221 cagtgcattc gaactggaat tgaatgccct ggttcgtcgc cactttccgc actggggcgc
    11281 gcgcgatttg ctgggggata aataatggcg ctgcatgacg aaaacgtcgt ctggcatagc
    11341 catccggtca ctgtgcaaca acgcgagcta caccacggtc atcgtggtgt agtgctgtgg
    11401 tttaccggcc tctctgggtc cggtaaatca acggtcgccg gggcgctgga ggaggcgtta
    11461 cataaactcg gcgtcagtac gtatctgctg gatggcgaca atgttcgcca cggattatgc
    11521 agcgatctcg gttttagcga tgccgatcgt aaagagaata tccgtcgcgt cggtgaagtg
    11581 gcgaatttga tggttgaagc cggactggtg gtgctgaccg catttatctc gccacaccgc
    11641 gccgaacgcc agatggttcg cgaacgcgta ggagaagggc gctttatcga agtgtttgtc
    11701 gatacgccgc tggcgatttg cgaagcccgc gatcccaaag gcttatataa gaaagcgcgt
    11761 gccggtgaac tgcgcaactt tacgggaata gattccgttt acgaagcgcc tgaatcggca
    11821 gaaattcatc tcaatggtga acaattagta acaaatttgg tacagcaatt attagatctg
    11881 ttgagacaga acgatattat cagatcctga gacaccaccg ggtttccatg cccggttcgt
    11941 caaagtaaca ggatcaaata tgcgtaatag ccataacatt acactaacaa ataacgacag
    12001 ccttactgag gatgaagaaa ccacatggtc actacctggt gccgtggtcg gttttatctc
    12061 ctggttattt gcgctggcga tgccgatgtt gatttatggc tctaacacgc tgttcttctt
    12121 tatctacacc tggcctttct ttctggcact gatgcctgtc gcggtagtgg tggggattgc
    12181 gctgcattca ttgatggacg gaaagctacg ctacagtatt gttttcaccc tggtgacagt
    12241 aggcattatg tttggcgcac tgtttatgtg gctactgggc taatttgtac tttcttgtct
    12301 cctctgttca taattcaaac cgtaactaat aatgagatta tgttctgcac gccctaggta
    12361 tacgtaacaa tggacaaatg tggtacattt gcccgcgttg tcgcggtatc cccaacagag
    12421 gatgtagagt cgtcttcgga tgcatgggat gatgatgccg tttttcaggg ggcaggatgg
    12481 gtaaactaac gctgctgttg ctggctattc tggtctggct acagtattcg ctgtggttcg
    12541 gtaagaacgg tatacatgac tatacccgcg tcaatgatga tgtggcggca cagcaagcta
    12601 caaacgcgaa acttaaagcg cgaaacgatc aactttttgc cgaaattgac gatctcaatg
    12661 gcggccagga ggcgctcgaa gagcgtgcgc gtaatgaact cagcatgacc aggccgggcg
    12721 aaacttttta tcgtctggtg cctgacgcgt cgaagcgcgc acagtctgcg gggcaaaaca
    12781 atcgataaat cagcccggga attaacatgg caaccactca tttggatgtt tgcgccgtgg
    12841 ttccggcggc cggatttggc cgtcgaatgc aaacggaatg tcctaagcaa tatctctcaa
    12901 tcggtaatca aaccattctt gaacactcgg tgcatgcgct gctggcgcat ccccgggtga
    12961 aacgtgtcgt cattgccata agtcctggcg atagccgttt tgcacaactt cctctggcga
    13021 atcatccgca aatcaccgtt gtagatggcg gtgatgagcg tgccgattcc gtgctggcag
    13081 gtttgaaagc cgctggcgac gcgcagtggg tattggtgca tgacgccgct cgtccttgtc
    13141 tgcatcagga tgacctcgcg cgattgttgg cgttgagcga aaccagccgc acgggaggga
    13201 tcctagccgc accagtgcgc gatacgatga aacgtgccga accgggcaaa aatgccattg
    13261 ctcataccgt tgatcgcaac ggcttatggc acgcgctgac gccgcaattt ttccctcgtg
    13321 agctgttaca tgactgtctg acgcgcgctc taaatgaagg cgcgactatt accgacgaag
    13381 cctcggcgct ggaatattgc ggattccatc ctcagttggt cgaaggccgt gcggataaca
    13441 ttaaagtcac gcgcccggaa gatttggcac tggccgagtt ttacctcacc cgaaccatcc
    13501 atcaggagaa tacataatgc gaattggaca cggttttgac gtacatgcct ttggcggtga
    13561 aggcccaatt atcattggtg gcgtacgcat tccttacgaa aaaggattgc tggcgcattc
    13621 tgatggcgac gtggcgctcc atgcgttgac cgatgcattg cttggcgcgg cggcgctggg
    13681 ggatatcggc aagctgttcc cggataccga tccggcattt aaaggtgccg acagccgcga
    13741 gctgctacgc gaagcctggc gtcgtattca ggcgaagggt tataccctgg gcaacgtcga
    13801 tgtcactatc atcgctcagg caccgaagat gttgccgcac attccacaaa tgcgcgtgtt
    13861 tattgccgaa gatctcggct gccatattga tgatgttaac gtgaaagcca ctactacgga
    13921 aaaacttgga tttaccggac gtggggaagg gattgcctgt gaagcggtgg cgctactcat
    13981 taaggcaaca aaatgattga gtttgataat ctcacttacc tccacggtaa accgcaaggc
    14041 accgggctgc tgaaagccaa tccggaagac tttgtggtgg tggaagattt gggctttgag
    14101 cctgatggtg aaggtgagca tattctggtt agaatcctca aaaacggctg caatacccgt
    14161 tttgtggcgg atgcactggc gaaattcctg aaaattcatg cccgtgaagt cagcttcgct
    14221 gggcaaaaag acaaacatgc tgttacggaa cagtggttat gcgctcgcgt gccaggcaag
    14281 gaaatgcccg atctgagcgc ctttcaactg gaaggctgcc aggtgctgga gtatgcgcgg
    14341 cacaagcgca agctgcgttt aggcgcgctg aaaggtaacg cctttaccct ggttctgcgc
    14401 gaagtgagca atcgcgatga cgttgaacaa cgtctgatcg atatttgcgt aaaaggtgta
    14461 ccgaactact tcggtgccca acgttttggg attggcggta gcaacttgca gggcgcgctg
    14521 cgctgggcgc aaaccaatac tccggtgcgc gatcgcaata aacggagttt ttggttgtcg
    14581 gcagcccgca gtgcgttgtt taatcagatt gttgctgagc gcctcaaaaa agcagacgtt
    14641 aatcaagttg ttgacggcga tgcgctacaa ttagccggac gtggtagctg gtttgtagca
    14701 accaccgaag aactggcgga attacagcat cgcgtcaacg ataaagagct gatgataacc
    14761 gccgcattgc cgggcagtgg cgaatgggga actcagcgta aagcgctggc attcgaacaa
    14821 gcagctgtcg ccgcagaaac tgaattacaa gctttactgg tgcgcgaaaa agttgaagcc
    14881 gcgcgcagag cgatgctgct gtatccgcaa caattaagct ggaattggtg ggatgacgtc
    14941 accgtagaga tccgtttctg gcttccggcg ggtagttttg caaccagcgt tgtcagggaa
    15001 cttatcaaca caacaggtga ttatgcgcat attgctgagt aatgatgacg gggtacatgc
    15061 acccggtata caaacgctgg cgaaagcctt gcgtgagttt gctgacgttc aggtggtcgc
    15121 ccccgatcgt aaccgcagcg gcgcttcaaa ttctctgaca ctggaatcct ccctgcgcac
    15181 gtttaccttt gaaaatggtg atattgctgt gcaaatggga accccgaccg attgcgtcta
    15241 tcttggcgtg aatgctctga tgcgtccgcg cccggacatt gttgtgtccg gcattaacgc
    15301 cgggccgaat ctgggggatg acgttattta ttccggtacg gtagccgccg cgatggaagg
    15361 ccgtcattta ggttttccgg cgctggccgt ctcgcttgac gggcataaac attacgacac
    15421 tgccgcggcg gtaacctgtt caattttgcg cgcactgtgt aaagagccgc tgcgcaccgg
    15481 acgtattctt aatattaacg ttccggattt acccttggat caaatcaaag gtattcgcgt
    15541 gacgcgctgc ggtacacgac atccggcaga tcaggtgatc ccgcagcaag atccgcgcgg
    15601 caatacgctg tactggattg gcccgccggg cggtaaatgt gatgccggtc cggggaccga
    15661 ttttgctgcg gtagatgagg gctatgtctc catcacgccg ctgcatgtgg atttaactgc
    15721 gcatagcgcg caagatgtgg tttcagactg gttaaacagc gtgggagttg gcacgcaatg
    15781 gtaagcagac gcgtacaagc acttctggat caattacgtg cgcaaggtat tcaggatgag
    15841 caggtgctga atgcacttgc tgccgtgccg cgtgaaaaat tcgttgatga agcgtttgaa
    15901 caaaaagcct gggacaatat cgccttgccg ataggtcagg ggcagacaat ttcgcagccg
    15961 tatatggtgg cgcgaatgac cgaattactc gagctgacgc cgcagtcgcg ggtgctggaa
    16021 attggcaccg gttcgggata tcaaacggca atcctggcgc atcttgtcca gcatgtttgc
    16081 tcggtcgaac ggattaaagg tttgcagtgg caggcgcgtc gccgcctgaa aaatcttgat
    16141 ttacataatg tttcaacccg tcatggcgat ggatggcaag gttggcaggc acgcgcgccg
    16201 tttgacgcta tcattgttac ggcggcaccg ccggaaattc caactgcgct aatgacgcag
    16261 ctggacgaag gcgggattct cgtcttaccc gtaggggagg agcaccagta tttgaaacgg
    16321 gtgcgtcgtc ggggaggcga atttattatc gataccgtgg aggccgtgcg ctttgtccct
    16381 ttagtgaagg gggagctggc ttaaaacgtg aggaaatacc tggatttttc ctggttattt
    16441 tgccgcaggt cagcgtatcg tgaacatctt ttccagtgtt cagtagggtg ccttgcacgg
    16501 taattatgtc actggttatt aaccaatttt tcctggggga taaatgagcg cgggaagccc
    16561 aaaattcacc gttcgccgca ttgcggcttt gtcactggtt tcgctatggc tggcaggctg
    16621 ttctgacact tcaaatccac cggcaccggt cagctccgtt aatggcaatg cgcctgcaaa
    16681 taccaattct ggtatgttga ttacgccgcc gccgaaaatg gggacgacgt ctacagccca
    16741 gcaaccgcaa atccagccag tgcagccagt agctcagcag ccggtacaga tggaaaacgg
    16801 acgcatcgtc tataaccgtc agtatgggaa cattccgaaa ggcagttata gcggcagtac
    16861 ctataccgtg aaaaaaggcg acacactttt ctatatcgcc tggattactg gcaacgattt
    16921 ccgtgacctt gctcagcgca acaatattca ggcaccatac gcgctgaacg ttggtcagac
    16981 cttgcaggtg ggtaatgctt ccggtacgcc aatcactggc ggaaatgcca ttacccaggc
    17041 cgacgcagca gagcaaggag ttgtgatcaa gactgcacaa aattccaccg ttgctgttgc
    17101 gtcgcaaccg acaattacgt attctgaatc ttcgggtgaa cagagtgcta acaaaatgtt
    17161 gccgaacaac aagccagctg cgaccacggt cacagcgcct gtaacggtac caacagcaag
    17221 cacaaccgag ccaactgtca gcagtacatc aaccagtacg cctatctcca cctggcgctg
    17281 gccgactgag ggcaaagtga tcgaaacctt tggcgcttct gaggggggca acaaggggat
    17341 tgatatcgca ggcagcaaag gacaggcaat tatcgcgacc gcagatggcc gcgttgttta
    17401 tgccggtaac gcgctgcgcg gctacggtaa tctgattatc atcaaacata atgatgatta
    17461 cctgagtgcc tacgcccata acgacacaat gctggtccgg gaacaacaag aagtgaaggc
    17521 ggggcaaaaa atagcaacca tgggtagcac cggaaccagt tcaacacgct tgcattttga
    17581 aattcgttac aaggggaaat ccgtaaaccc gctgcgttat ttgccgcagc gataaatcgg
    17641 cggaaccagg cttttgcttg aatgttccgt caagggatca cgggtaggag ccaccttatg
    17701 agtcagaata cgctgaaagt tcatgattta aatgaagatg cggaatttga tgagaacgga
    17761 gttgaggttt ttgacgaaaa ggccttagta gaagaggaac ccagtgataa cgatttggcc
    17821 gaagaggaac tgttatcgca gggagccaca cagcgagtgt tggacgcgac tcagctttac
    17881 cttggtgaga ttggttattc accactgtta acggccgaag aagaagttta ttttgcgcgt
    17941 cgcgcactgc gtggagatgt cgcctctcgc cgccggatga tcgagagtaa cttgcgtctg
    18001 gtggtaaaaa ttgcccgccg ttatggcaat cgtggtctgg cgttgctgga ccttatcgaa
    18061 gagggcaacc tggggctgat ccgcgcggta gagaagtttg acccggaacg tggtttccgc
    18121 ttctcaacat acgcaacctg gtggattcgc cagacgattg aacgggcgat tatgaaccaa
    18181 acccgtacta ttcgtttgcc gattcacatc gtaaaggagc tgaacgttta cctgcgaacc
    18241 gcacgtgagt tgtcccataa gctggaccat gaaccaagtg cggaagagat cgcagagcaa
    18301 ctggataagc cagttgatga cgtcagccgt atgcttcgtc ttaacgagcg cattacctcg
    18361 gtagacaccc cgctgggtgg tgattccgaa aaagcgttgc tggacatcct ggccgatgaa
    18421 aaagagaacg gtccggaaga taccacgcaa gatgacgata tgaagcagag catcgtcaaa
    18481 tggctgttcg agctgaacgc caaacagcgt gaagtgctgg cacgtcgatt cggtttgctg
    18541 gggtacgaag cggcaacact ggaagatgta ggtcgtgaaa ttggcctcac ccgtgaacgt
    18601 gttcgccaga ttcaggttga aggcctgcgc cgtttgcgtg aaatcctgca aacgcagggg
    18661 ctgaatatcg aagcgctgtt ccgcgagtaa gtaagcatct gtcagaaagg ccagtctcaa
    18721 gcgaggctgg ccttttctgt gcacaataaa aggtccgatg cccatcggac ctttttatta
    18781 aggtcaaatt accgcccata cgcaccaggt aattaagaat ccggtaaaac cgagaatggt
    18841 cgttaacact gtccaggttt tcagaccgtc tgctaccgac aaccccagat atttggtcac
    18901 aatccagaac cctgagtcat taatatgtga cgcgccaagc ccaccaaagc aggctgccag
    18961 cgtcaccaat acgcactgaa tcggattcaa tcccatcacc gcttctgaga gtaacccgcc
    19021 ggttgtcagg attgctacgg ttgctgaccc ctgcgatgca cgcagagcca gtgaaataat
    19081 aaatgcggct ggtaacagag gcaggtcaat catttgtagc atattggcaa gggctttgcc
    19141 gacgcccgat tccaccagca ctttgccaaa tacccctcca gcaccagtaa ccaaaatcac
    19201 taccgccgca gtgggaaggg ctgagcccat aatgtcgctg gtgtgttgta agctccagcc
    19261 gcgacgtaaa gccaataacc agaatgccag caccagcgca atcattagag ctaccattgg
    19321 tgagccgatc agctgtagcg taccaagcag gggatgcgaa ggcggcatca gtgttgcgga
    19381 aaccgtaccc gtcatgataa tcgcgatagg aataacaatt agcgaggtga ccagcgcgac
    19441 gcccggtgga tttattttat cgcttaattt tgtcgcgcct tcctcactgg ccggagccag
    19501 ttgcatctgt tccagtactt ctactgacat cgcatattgg cgcttattga ttattttcgc
    19561 tgcaaagtag ccaacaatcc ctacgggaat agaaatcgca ataccgatga tggttagcca
    19621 gccgatgtct gcgtggagta accccgctgt ggcgacaggg cctggatgcg gcggtactgc
    19681 cacatgaaca gttagcatga ttccagcgac aggcaggcca aatttgagtg gcgatatttt
    19741 ggcaaccttg gcaaaaccgt aaatgattgg cgcaagaata ataaagctga catcaaagaa
    19801 gacgggaata ccgaggaaga acgctgccag agtcagcgca gcgatagttc gtttgtcacc
    19861 taacttgcga ctgaaataat tagccagtga ctctgcacca ccagagtgtt cgatcatacg
    19921 ccccagcata gcgcccagac caataataat agtgacggaa ccaagcacac cgcccatccc
    19981 ggcgatcatc actttaccca cttcgcccgc cggtataccc gccgcaagtg cgactaacag
    20041 gctgacgagg agcagagcaa cgaatggttg tacctttgcc ttgatgacca gcagcaacag
    20101 catgattacg ccagctaacg caatgcataa caatgtaatt gtggacatgg gaaaccctgt
    20161 ctgaaagtta tagttaacct accccatccg tagatggggg gatgtatggg tacgttgtaa
    20221 ttagggattt aacgaattag cgccaggcgt caaaccagcc aagcccttct tcggtgaggc
    20281 cacgaggttt atattcacaa ccgatccagc cctgatatcc cacctcatcg aacaggcgga
    20341 acagccacgg atagttgatt tctccatcgt ccggttcatg tcgatcaggt agtccggcaa
    20401 tttgtacgtg cgcatatttc ccagcgtagt cgcggattaa atgcgtcagg ttgccatcta
    20461 ctttttgcgc atgaaaagta tctagttgaa taaacacgtt atctcgcgca acctcttcaa
    20521 caatagccag tgcctgatac tggctggaga agagataatg aggcttaacg tcggggctga
    20581 gtgcttcaac taatattcgc ttgccgtgtg gcgcaaagcg gtcggcagcg tagcggagat
    20641 tatcgataaa tactgcccgg taccgttcag catcttcgcc agcgggcacg acgcctgcca
    20701 tcacatggac ttgttcacaa ttgagcgcca atgcatattc cagtgccagg tcgatgtctg
    20761 cgtgtgcttc gtgctcacgt ccgggaaggg cggataatcc ccattccccc gcattaatat
    20821 ctccgggagc ggtattgaac agcgccagtg tcagatggtt ttgctccagt tgcttttgga
    20881 tttgcagggt ggagtagtca tagggaaaca gaaattccat agcatcgaac ccggcttttc
    20941 gcgctgcggc gaagcgttca ataaaaggca cttcggtgaa catcatggat aaattagctg
    21001 caaaacgagg cattgcatta actccttaat tccgcaattt cacctgcggt cagatacgga
    21061 tcgggcggtc accgagaata aaaatcagct ttgccgtttc ctccagctct tccatattgt
    21121 tggcggcttc ttgcaggctt tcaccgcaaa ccactgggcc atgatttgcc agtaaaaaag
    21181 cctgattgtc tgctgccagt tccgccagat cctgtgcgat gcgtttatcg cccggtcggt
    21241 aatagggcac cagcgggaca tttcccatcc gcatcaccac gtatggtgtg aacggacgaa
    21301 taacgttgct gctgtccagc ccttgcaggc aggaaagcgc cgtcgaccat gtgctgtgca
    21361 aatgcaccac cgctttacag cgcggattgt tgcgatacag cgccagatga aagagcacct
    21421 ctttcgaggg tttgtcacca cttaaccatt cgccatccgc ggcgactttg gaaagccgct
    21481 gcggatcgag attgcccagg catgaacctg tcggtgtcgc cagtaaattc ccgtcaggta
    21541 aaagcagcga cagattgcca gccgaaccgg ttgcatagcc gcgctgaaag aatgaactgg
    21601 caatccgcgt catctcctct cgcaaagact gctctacttt tgcgaaatcg ctcatgataa
    21661 aaactctctt tgggctcgtg aaaaaaggct tcatcaccga agttgccaga tttaagggcg
    21721 agtgagacag gcttatccag tgcgtttacc cacggcacgc cgggggaaat ggttgggcca
    21781 atatgaaacc cttttatgcc caggctctgt gtgactacgc cggaggtctc accgcctgcg
    21841 acaataaagc gtgtcacgcc ttccgctgct aaccgcgccg ctagttgaga aaacagagtt
    21901 tctactgcct gactggcttt ttgtgcaccg tattgctgtt gaattgctgc caatgcgtca
    21961 gtgctggcgg tggcaaaaac cagtggagca agtacacttt cctggcccag aacccactct
    22021 gccagttcgt gtgcataagc ggccagagtt tcggttgaga ggcagcgtgc cacatcaact
    22081 tcacgggctg gtgcaatttg acggtaatgt gccacctggc ggttggtcat ttgagagcat
    22141 gaaccggaga gcactacgcc gcgcccagcg agcggatgcc ctgcttcgcg agcctggtta
    22201 ccgttttctt gcgcccactg ccgggccagg ccaatcgcca gaccagaacc gcccgttacc
    22261 agtggggcat cgcgcaaggc ttctccctga atttccagat ggtgttcggt cagcgcatca
    22321 agcaccgcgt agcggtagcc ctcttgctgt aagcgagcct gctcttgacg aacggcatcc
    22381 acaccttgtt cgaaaacatg tgccgaaacg acgccgcagc gccctgtgga ttgcgcttca
    22441 accagacggg gaagatagct gtcggtcatg ggatttaccg ggtgatggcg catcccggat
    22501 tcggccagca gttgattcat tacgaacaaa tacccctgat aaaccgtacg tccgttgacc
    22561 gacagggccg gagagaagac cgtaaacggc gtgtcgagag catccattaa tgcatcggta
    22621 accgggccga tattaccttt cgccgtactg tcgaaagtag agcagtattt gaaatagatc
    22681 tgtttgcaac cttgctgttg caaccagctc agagccgcca gcgattgctg tgtggcttca
    22741 accaccggac aggagcgcgt tttcaggctg atcaccagtg cgtcgattgc ttccggcatt
    22801 ttacctgttg gaacaccgtt aatttgtacc gttggtagac cgttttccac cagaaaactg
    22861 gcgatatccg tcgcgccggt aaaatcatcg gcgataacgc caatcttgat catgatttcg
    22921 ctcccggtag agtgatgcca gagaaaatct tgataactgc gctatcgtct tctttcccgt
    22981 aacctgcgtt actggcgctg gtgaacatat tcaatgctgt tgaggccaat ggcagcggga
    23041 agtgcagggc tttggctgta tcggcaacca gaccaagatc cttaacaaaa atatcgacgg
    23101 ctgaatgcgg ggtgtaatcg ccatccacca catgacgcat ccggttttcg aacatccagg
    23161 aatttccggc ggcattggtc acgacgtcat acatcacatc cagcgggatc cccgcacggg
    23221 ctgcaagtgc catcgcttcg gctccggcag caatatgtac gcccgctaac aactggtgaa
    23281 taatttttac ggtcgaacct agtcccggtt ctgcacctat gcgataaact tttccggcaa
    23341 cggcttccag cacgggtgcc agtcgttcaa aggcaatatc gctaccggag gccatgacag
    23401 tcatttcacc gttagcggct tttactgcat caccagaaac tggcgcatcc agcatttcca
    23461 gatcgaatcc agccagagcg gtagcaattt cttgcgcatc agcactagcg atagtggaag
    23521 aaaccattac tgccgtaccg ggtttcagat gttgtgcaac gcctgtttca ccaaacagca
    23581 cctgtttaac ctgggccgca ttgaccacca gcaccagcag agcgtccagt ttttcggcaa
    23641 acgtcgcggc gttatcagaa accccgcaag cacctgcctc tttcaacgta gcgcaggcat
    23701 tgctgttcag gtctgcgccc caggtagaaa gacctgcgcg gacacatgac agtgctgctc
    23761 ccattcccat tgaccctaag ccaacgatac cgacatgaaa ctcagatccc gttttcatct
    23821 gctctccttg ttaatttaag tgatattttg tttgatattg tgaatataag cgctggaaga
    23881 taacgatatg gtgagccgat tcacataaat taacattgtg tgttatttta tgtgaactaa
    23941 gcgttagttg cgccgcgcac gtttcgcagg caaatagcgt agaatgtcag caggacaaag
    24001 gaaggagcaa aagttgatcc ccgtagagcg tcgccaaatc atccttgaga tggtagctga
    24061 aaaaggcatt gtcagtattg ctgaactaac ggacagaatg aatgtatcac atatgaccat
    24121 tcgtcgggat ttacaaaaac tggagcagca gggagccgtt gtgctggtgt ccggaggcgt
    24181 ccagtctccg ggacgcgtgg cgcatgaacc ttctcatcag gtaaaaactg cgctagcaat
    24241 gacgcaaaaa gcggctattg gcaagctggc ggcaagtctt gttcagccgg gaagttgtat
    24301 ctatctggat gcaggaacga ccacgttagc gatagcacag catctgattc acatggagtc
    24361 actgactgtg gtcacaaacg atttcgttat tgcgaactac ttgctcgaca acagtaattg
    24421 cacaattatt cacactggcg gtgcagtgtg tcgggaaaac cgttcctgtg tcggggaagc
    24481 cgctgcgacc atgctgcgca gcctgatgat tgatcaggct tttatttctg catcgtcatg
    24541 gagtgtgcgg gggctttcta cgccagcgga agataaagtc acggtgaaac gggcgattgc
    24601 tagtgccagc cgccagcgag ttttggtctg tgatgcgacg aaatatggtc aggtggcgac
    24661 atggctggcg ttaccattaa gcgagtttga tcagattatt acagacgacg gtttgccgga
    24721 gagtgccagt cgcgcgctgg cgaagcagga tctctctttg ctggtagcga aaaatgaata
    24781 atggcctgca ataacatctg gttactcatg cttcacagaa gaagcatgag actaccttat
    24841 tttataaaat gacagccgcc cacttttcgg cgatccggta tcaatataaa tctggttagc
    24901 gaacgtctga atgttatcaa acatcatatg tccaaatata aaataatcag cgccgtttat
    24961 ttgttgtaac tcgccattaa gcgatttctg cacacgataa acaggccaga gtaattcgct
    25021 ctccgctatt tctttgccaa agagatattc atcacccgga taatctgcat gtgcgatgac
    25081 atattttatt atgtcgttag tgatttcaat aatatgtgga aggtgatgga atttcagcaa
    25141 cagatctatt gcctcttgtt gctctgaatc atttaaatcg aaaaaccagt caccaccgct
    25201 ggcaagccac atattgccat cgccggtcgc gaacgcatcc agctccattg cttcgtggtt
    25261 gcctttaacg gagataaacc agggctggtt tagcaggcgc aggacgtcaa gactctccgg
    25321 cccacgatca atattatcgc cgacagaaat aagtaagtcg gtttcagggc aaaaagagag
    25381 ttgatgtaag cgggattgta ataattgata ttcaccatgt atatcaccaa cgacccatat
    25441 atggcgatag tgatgggcat taattttttg atagcgtgta gatggcatgg ttttaccctg
    25501 taaaataagc tttcctatta tacagggggt ttttatttta ttcgtcagtt gtcgttaata
    25561 ttcccgatag caaaagacta tcgggaattg ttattacacc aggctcttca agcgataaat
    25621 ccattccagc gcctgacgcg gagtcagtga atccgggtcc aggttttcca gagcttcgac
    25681 cgctggcgag gtttcttccg gtactgacag caaagacatt tgcgtaccat ccacttgcgt
    25741 agcggcggcg ttcggcgaaa tgctttccag ctcacgcagt ttttgccgtg cgcgcttaat
    25801 cacctctttt ggcacgcctg ccagagctgc aaccgccagg ccgtagcttt tgctcgccgc
    25861 gccatcctgc acgctatgca taaaggcaat ggtgtctccg tgctccagcg catcgagatg
    25921 cacgttggcg acgtcttcca ttttctccgg tagctgggtc agctcgaaat agtgggtggc
    25981 aaacagcgtc aatgccttaa tcttattcgc cagattttct gcgcacgccc acgccagcga
    26041 cagaccatcg taggtggacg ttccacgccc gatctcatcc attaacacca gactgtattc
    26101 ggtggcgtta tgtaaaatat tggcggtttc agtcatctcc accataaagg ttgagcgccc
    26161 ggaagccagg tcatctgccg cgcctacgcg ggtaaagatg cgatcgatag gtccaatctc
    26221 gactttttgt gccggtacat agctgccaat gtaggccatc agcgcaatca gtgcggtctg
    26281 gcgcatatag gtacttttac cgcccatgtt cgggccggta ataatcaaca tacggcgctg
    26341 cggcgacaga ttcagcgggt tagcgataaa tggctcattc agtacttgtt caactaccgg
    26401 atggcgacct tcggtaatgc gaatgcccgg tttatcaatg aaggtcgggc aggtgtagtt
    26461 cagggtatag gcccgttccg ccaggttaac cagcacgtcg agttccgcca gcgcgctcgc
    26521 gctctgttgc aacgcttcca gatgcggcaa cagcaggtcg aacagctctt cataaagctg
    26581 tttttccagt gccagtgctt tgccttttga ggtgagaact ttatcttcgt actcttttag
    26641 ctctggaatg atgtagcgct cggcgttttt cagcgtctgg cgacgcatgt agttgatggg
    26701 tgccagatgg ctttgcccac ggctgatttg aatgtagtag ccgtgcaccg cattaaagcc
    26761 aactttcagc gtgtccaggc cggtacgttc acgctcgcgg acttccagac gctccagata
    26821 atcggtcgcg ccgtcagcca gcgcgcgcca ctcatccagc tcttcgttat agcccgatgc
    26881 gataacacca ccgtcgcgta ccagcaccgg cggtgtgtcg atgattgctc gctccagcag
    26941 atcgcgcagc tcggcaaact cgcccatctt ctcacgtagc gcctgtaccg gtgcactatc
    27001 gacagtttct aactgtgcac gcagctccgg cagttgctgg aaagcgtggc gcatacgggc
    27061 cagatcgcgt gggcgagcag ttcgtaaagc cagacgtgcc agaatacgtt caaggtcgcc
    27121 gacctgacgc agtaccggct gtagcccggc ggtgaaatcc tgcaatgcgc caatagtttg
    27181 ctggcgctca agcaacacgc gggtatcgcg cactggcata tgcagccagc gtttcagcat
    27241 acgactaccc atcggcgtga cggtgcagtc gagcacagaa gccagcgtat tttccgcacc
    27301 gcccgccagg ttctgagtaa tttccaggtt acgacgtgtc gcggcatcca taatgatgct
    27361 gtcctgctca cgttccatgg tgatagaacg aatatgcggc agggtcgtgc gttgggtatc
    27421 tttcgcatac tgcaacagac aaccggcagc acaaagtccg cgcggcgcgt tctcgacgcc
    27481 aaaaccgacc agatcgcggg tgccaaattg cagattcaac tgctggcgcg cggtgtcgat
    27541 ttcaaactcc cacagcgggc gacggcgcag gccgcgacgg ccttcaatca gcgacatctc
    27601 ggcgaaatct tctgcataca gcagttccgc cggattagtg cgttgcagct ctgccgccat
    27661 cgtttcgcgg tcggccggtt cgctcaggcg aaaacgcccg gagctgatat ccagcgtcgc
    27721 gtagccgaaa cctttgctgt cctgccagat agccgccagc aggttgtcct gacgctcctg
    27781 taacagggct tcatcgctga tggtgcctgg cgtaacgata cgcacaactt tgcgctcaac
    27841 cggacctttg ctggtcgccg gatcgccaat ttgttcgcag atggcaacgg actctccctg
    27901 attcaccagt ttggcgagat agttttccac cgcatggtag ggaatccccg ccatcgggat
    27961 cggctctccc gccgaagcac cgcgtttggt cagtgaaata tccagcagtt gcgacgcgcg
    28021 ttttgcgtcg tcataaaaca gttcataaaa atcacccatc cggtaaaaca gcaggatctc
    28081 gggatgctgg gctttcagcc tgagatactg ctgcatcatg ggcgtatggg cgtcgaaatt
    28141 ttctattgca ctcatggggt tatgtccggt tccctgatat taaatggggt gtgatggttt
    28201 ttattttcgt tgtaatcaca taaggcgcac atgataccgg agttaatcat ttcaggggaa
    28261 gaagcgaacg gcgagttctt gatgctggtt ccgggaaaga tgctgttttg cagcttttgc
    28321 gtgatgctta tgaagcaagt acgcaaaatt gcgtcggttg aataaacctc ctccttcaga
    28381 gccatagtcc cctttcaaat taagttgtaa tataaataca ccttaagagt atggaggcag
    28441 catgtccggc aagcgtatct ctcgtgaaaa actgacgatt aaaaaaatga tcgatcttta
    28501 tcaagcgaaa tgcccgcagg cgtcagcgga gccggagcat tacgaggcgt tgtttgttta
    28561 cgcgcaaaag cggctggata aatgtgtgtt cggcgaagag aaaccagcct gtaagcagtg
    28621 tccggtgcac tgttaccagc ctgcaaagcg tgaagagatg aaacagatta tgcgttgggc
    28681 cgggccgaga atgctgtggc gtcatccgat cttaaccgtg cgtcatctca tcgatgacaa
    28741 gcgtccggtg ccagaactgc cggaaaaata tcgtccgaaa aaacctcgtg aatagtatgc
    28801 cggacaggca gatctgtccg gcaatttgca gttaaatcaa tgccgattta tcaattccca
    28861 gccgcttcat ccgtgacagc agggtcgtgc gtttcagccc cagacgttgc gcagcgcctt
    28921 taggcccggc aaccacgccg ttggtttctt tcagcacgcg aacaatcaac tgatattcat
    28981 cttcgccctc ctgagcgaca accgttgcgg caggcggcgt ttcaggctcc ggtaaagcaa
    29041 tatctggcaa tgacagctgc agcacgttgc cgcgtgttag caatactgcg cgctcaatga
    29101 cgttttccag ttcgcgtacg ttacccggcc actccatgtt gctcaaggtg cgcagcgtct
    29161 cggctggaat gctgtcgata ttgcgcccca gacgacgggc aattttgaag gtaaaggctt
    29221 tcgccagcag cggaatatct tccggacgct cgcgtagtgg cggcaggtga atcgggaata
    29281 cgttcaggcg gtaatagaga tcgctacgga actctcggtc ggcgaccatt tttttcagat
    29341 cgcggttagt cgcggcaatt aaacgtacgt ccgtctgaat gattttgttg ctgccgagac
    29401 gttcaaactc ctgttcctgc aatacacgca gcaacttcgg ctgtaactcc agtggcatat
    29461 cgcccacttc gtcgaggaac agggagcttt tatccgccag ttcaaaacga ccaatgcgct
    29521 gggcgctggc accggtaaaa gccccacgct catgaccaaa cagatcgctt tccagcaatc
    29581 cggcaggcat cgccgcgcag ttcattttga ccatgcggcg attattacgc ccactgagat
    29641 tatggatcgc gcgggcaatc agctctttac ccgtgccagt ttcaccgagg atcagcacgg
    29701 tactgtcact ttgcgccacc atttcaactt gtttaagcac gctgtacatg gcttcgctgc
    29761 ggccaataat ctcgccaaat tcactatcaa cattgttgag ctgctcggtc agggcgaggt
    29821 tttcatcaac cagccgttct ttcagacgat ggatttcctg ataggcgagg gcgttatcga
    29881 cagcgattgc cacacgttcg gcaatctggc gcagcaaatt cagattggta gtggtaaaca
    29941 ctttctcttc gcattgcgcc agtttcagca cgcccagcat ggtgtcgcca gacatcagcg
    30001 gtaacaggca caaggtttga atctggttgc cccaggtgtc gaacaacatg cgttcatagg
    30061 gggctaaatc gtcccgctcg tggagattga tcagcagcat ctctttactt ttgaacacgc
    30121 gttcggtgag ggttccggct tcatcgactt cgctctgttc gtgggcggga tgttgtttat
    30181 caagatagtg agtggagtag atgttgagtt tgtttttacg gtggctgcgt aagacgatac
    30241 tgatatcgtc aatgtcgaaa tagtaatgga tttctttggc gacttcgctg accagttcgt
    30301 ccatatccag gcgggaaagc accgcgttgg taatggcaac caggatgcgg aagttatcgc
    30361 gctcccggca taacaactca tagtcgacat tgttgacgac gcggctctgg atttgttcgg
    30421 tgacgacaga aacgatctgc gtaaatgttt gcagacgatt gaactctttt tcgctccagg
    30481 gacgatcgtc ataacgaata aattcacagc caccaaaaat atgcccttcc gccgccagtg
    30541 gcatcaggca atagtgacca aatttggggt atagcccacc agcgaccagc tgcggccagg
    30601 tttcacaaaa ttcttcgtaa ctgcaatgca gcgtatcagg gcgcgacaaa atgcggcgta
    30661 ccggaccgtg tgccagaaca gtttcgtctt catatttaat gggggtgtct ttttcacgcg
    30721 atgcgtaata agacgcacgt tgagtctgcg cttgccacaa cacaatagcc gcgttgtcgg
    30781 cgagcgcaga acgctttacc agttgcgaaa gagcctcaca cagcgaggcc agatcgggct
    30841 gctgcaatag tgtccgagtg atgtcgaaca acccttgctg tccgagatca ctcatcggtg
    30901 tatatgacat tttgttcttc caggaaagca ccgcaaagcg gtgcaaaagg tcattgacta
    30961 actataggag atttagaatt ttattagcat atacgcggaa gcggttcggc gtgtggtaaa
    31021 tcgagggttc gtttcacacc atacagaccg gcaagacgaa cacctttacg ttccaccact
    31081 tcaccaatta gcgccgcgtc tttccccagt ggatgggaat gtaacgctgc cagcacttgc
    31141 tctgctgcgt tgcgttcaac agctattact agtttgcctt cgttggcaaa gttaagggcg
    31201 tccagtccca gcagttcgca aacgccgcgc acagcaggtt taaccggcag tgctgattca
    31261 gaaatttcaa taccacaacc gcaggctgcc gcgaactcat gaaccaccgc gtttacacca
    31321 ccacgggtgg catcacgcag cgctttcacg ccgggaatgt cacgcagcgt ctgaataagc
    31381 ggcgtcagca ccgcgcagtc gctgaccagt tcaccatcca gccccagttg ttcacgcagg
    31441 ttaaggatag tcgccccgtg gtcgccgagt gtaccgctaa ccagcaatac atcgcctgcg
    31501 gttagcgtct gtgcgcccca gtgaatattc gccggaattg cgcccatgcc agcggtgttg
    31561 ataaacagtt tatctgccgc gccgcgctgc accactttag tatcgccagt aacgatggca
    31621 atgcctgccg tgcgggcggt ttctgccatg ctggtcacta cggctttcag tgtctccatc
    31681 ggcaatcctt cttcgaggat aaagccacag gagagatagc acggaatagc gccactgacc
    31741 gcaacgtcat tcgcggtgcc gcaaatcgcc agcttgccga tattaccgcc aggaaagaac
    31801 agcgggtcaa tgacgtaact gtcggtggag aacgccagac gatcgccttc tgctaccagc
    31861 tgcgccagat caagacgtgc ctggtcttcc tgctctgcca gccacgggtt ggcaaaggct
    31921 tccataaaca ggctgttgat taattgctgc atcgcctggc caccgctgcc gtgggcgagt
    31981 tggatattat tcacgcttca ctctcctgct gacgatactg ataccacgcg gcgcacgctc
    32041 cttcggagga gaccatcagt gcaccaaatg cggtttgagg attacaggtg ttaccaaaca
    32101 gcgggcattg atgcggctta catttgcccg ttaatacctc accacaacgc gcgcgcgggt
    32161 catcgcagac ctgctgcggt gccgggcgga aatgtgcttc ggcatcgaat cgttgataat
    32221 ccggcgtcag gtgcacgcca gaagattcaa tcacgcctaa gccgcgccat tcgctgtcgc
    32281 cgttgacaca gaacacatcg gcaatcgcct gttgcgccag caggttaccg gcatccggta
    32341 ccacccgacg atactgattc tctaccttgc tgtgggccgc tattttctgc tccaccagca
    32401 tcaccacgcc ttgcagtaga tcaaggggtt cgaaaccagc gaccaccagc ggacgatgaa
    32461 aatcgctggc gataaaatta taggcatcag tgccgataac catactaacg tggcccggcg
    32521 cgaggaacgc gtcgataccg ttatccggct gttccagcaa actgcgcagc gtcgggataa
    32581 gcgtaatgtg ctggcagaag aagtaaaaat tctgcacatc acgcgctttc gcctgttgca
    32641 gagtgatggc ggtggtcggc atggtggttt caaaacctaa gccgaagaac accactttgc
    32701 gggttggatt ctcctgcgcc agtttcaacg catccatcgg cgagtaaacg atgcgcacat
    32761 cggcaccgcg tgcttttgcc tgcaacagcg atccctgttt ccctggtacg cgcatggcat
    32821 cgccaaaggt acagaagatg acttccggat ggctggcaat ctccacgcag gtgtcgattc
    32881 tacccatcgg cagtacgcac acagggcaac ccggaccgtg gataaactca acgttttcag
    32941 gcagtaactg gtcgaggccg aatttaaaaa tagcgtgggt atgaccaccg cacacttcca
    33001 taatccgcag agggcgttcg gcggtgtaag agagatgtga agcacgttcg cgcagatgct
    33061 caattaactg catcacctgt tccggcgcgc gatattcatc aacaaaacgc attatttttc
    33121 ctcgccatac aacagcgcgc cgacatccgg ctcaacgtca aacatgtttt gtaaggcgtc
    33181 gagagtgtcg cgtgcttcgg cttcagtaat tacgctcatg gcaaagccaa cgtgtaccag
    33241 tacccactgg cccacgcgcg gctgaccgtt ttcatcgcag ctgccgacta acgttaaatc
    33301 gacatcgcgc tgaatgccgc agacgtcgac ttttgcctgg ttgccgtcaa tggtgcggat
    33361 ctggccggga acgcctatgc acatcgctgt gtctccagcc agttcagcca ctggtccatc
    33421 ccttcaccgc tggtggcgga aataaggatg atttcaattt ctggattgac ttcgcgggcg
    33481 caggcgatgc acttctcaac gtcaaagttg agatacggca acaggtcaac tttgttgagc
    33541 agcatcagcg aggcggcggc aaacatatgc ggatatttca gcggtttgtc ttcaccttcg
    33601 gtaacggaaa gcaccgccac tttgtgtttt tcaccgagat cgaagctggc cgggcatacg
    33661 aggttgccaa cgttttcgat aaacagaata ccgttatcgt ccagtggcag acgcggtgcg
    33721 gcgtcggcaa tcatctgtgc gtcaagatgg cagcctttac ctgtgttcac ctgaatcgct
    33781 ggtgtgccgg tagcgcgaat gcgtgcggca tcgttcacgg tttgctggtc accttcaata
    33841 accgcgcacg gaacgctgtc tttcaggcgc attagggttt ccgtcagcag ggtggtttta
    33901 ccggaacctg ggctggaaac caggttgagc accagttgct tgcgggcagc aaagcgcgcg
    33961 cggttgcgtt cagccagacg gttgtttttg tccagcacgt caatttcgac ttccagcatc
    34021 cgacgctggc tcatgcccgg tgcgtgagtg cccgcttcgc catgaccgta atgcaggtcg
    34081 ccttcttcag tctggctggg ggtaaattca ggcgctttaa tgccggtgat tttcatcttc
    34141 gggcgtgccg ccggggcaaa tggcgcgcta cgaaacgcgg aatgagggtt atgttcatca
    34201 ccctcgatat acaggttgcc ttcaccgcaa ccgcatgttg tacacatcgc tcactcctgg
    34261 tctatttcta tccgccgaat ctgtaaaccg tcgtctgcca caatctgtag catgtcacca
    34321 tgacactgtg gacagcggcg gacgcgctgg gtcaatagcg tcacatactg ttggcatgtt
    34381 tcacaccagc attcgacctc ttgttcttcg aggtgcagtt tacaaccttc cgccacgctg
    34441 ccgcggcaaa ccagatcaaa acaaaaggca agagagctgg tttcgacaca agaaaatgcg
    34501 ccaattttga gccagacccc agttacgcgt tttgcgccgt gttttgcggc ctgctgttcg
    34561 atcaattcca gtgcccgttg gcagagggtt atttcgtgca tatcgcctcc cattaactat
    34621 tgccagctac aagcaataat tgtgccagtg ttgattatcc ctgcggtgaa taatgtcgat
    34681 gatgtcgaaa tgacacgtcg acacggcgac gaaattcatc tttagcttaa aaatcgtttt
    34741 aataacaata aattaaaaat tggcacagaa aatgcttaaa gctggcatct ctgttaaacg
    34801 ggtaacctga caatgactat ttgggaaata agcgagaaag ccgattacat cgcacagcgg
    34861 catcgtcgcc tacaggacca gtggcacatc tactgcaatt cgctggttca ggggatcacg
    34921 ttatcgaaag cgcgcctgca tcacgccatg agctgcgcgc cggacaaaga actctgtttc
    34981 gtcctttttg aacattttcg tatttacgtc accctggcgg atggctttaa cagccacacc
    35041 atcgagtatt acgtcgaaac aaaagagggc aaactgtggt ttgcgctggg gcgtcttggc
    35101 actctgctgc tggcgattgc ttgctggctg ctgtggcagc gttatggcac gctggatctg
    35161 cgcctgctgg atatgcgtat gcaacagctg ccgctcggtt ccgatatctg gctgctcggt
    35221 gtgattggct ttggcctgct cgccgggatt attccgctgc acggctgggt gccgcaggca
    35281 catgctaacg cctctgcgcc agctgccgcg ttgttttcta cggtagtcat gaaaattggc
    35341 ctgctgggca ttttaaccct gtcactgctg ggcggtaatg caccgctgtg gtgggggatc
    35401 gtgctgctgg tgctcggcat gatcaccgcg tttgtcggtg gtctgtatgc gctgatggag
    35461 cacaacatcc agcgcctgct ggcttaccac accctggaaa atatcggcat tatcctgctg
    35521 gggctgggcg ctggcgtaac gggtatcgcg ctcgaacaac cggcgctgat tgctcttggc
    35581 ctggtcggtg gtctgtacca tctgcttaac catagcctgt tcaaaagcgt actgttcctc
    35641 ggggcgggga gcgtctggtt ccgtaccggt catcgcgata tcgaaaaact cggtggtatt
    35701 ggcaagaaaa tgccggttat ctccatcgcc atgttagtcg ggttgatggc aatggctgcg
    35761 ctgccgccgc tgaacgggtt tgccggggaa tgggttatct atcaatcctt tttcaaactg
    35821 agcaatagtg gcgcgtttgt tgcccgtctg ctggggccgc tgctcgctgt gggtctggca
    35881 attaccggtg cgctggcggt gatgtgtatg gcgaaagtct atggcgtcac gttcctcggc
    35941 gcgccgcgta ccaaagaagc cgaaaacgcc acctgtgcgc cgctcctgat gagcgtaagc
    36001 gtagtggcac tggcgatttg ctgcgtaatt ggcggtgttg ctgcgccgtg gctgctgccg
    36061 atgctctctg ctgccgtacc tctgcctctg gagcctgcta acaccaccgt ttctcaacca
    36121 atgatcacat tgctgctgat tgcctgcccg ctgctgccat tcatcattat ggcgatttgc
    36181 aaaggcgacc gcctgccgtc acgttcccgc ggtgcggcct gggtgtgcgg ctacgaccat
    36241 gaaaaatcaa tggtgattac cgctcacggt tttgccatgc cggttaaaca ggcgtttgcg
    36301 ccagtgctga aactgcgcaa atggctgaat ccggtgtcgc tggtgccggg ctggcagtgc
    36361 gaaggtagtg cgttgctgtt ccgccggatg gcgctggttg aactggcggt actggtggtg
    36421 attattgttt cacgaggagc ctgagaatga gtgttttata tccgttaatt caggcgctgg
    36481 tgttatttgc cgttgcgccg ctgctctccg gtattacccg cgtggcgcgc gcccgtctgc
    36541 ataaccgtcg cgggccgggc gtgttgcagg agtatcgcga cattatcaaa ctgctgggcc
    36601 gccagagcgt tggcccggat gcctctggct gggtgttccg cctgacgccg tatgtgatgg
    36661 tgggcgtcat gctgactatc gctactgcgc tgccggtggt gaccgtcggt tctccgctgc
    36721 cgcaactggg cgatttgatc accttactgt atctcttcgc catcgcgcgt ttcttctttg
    36781 ccatttccgg tctggatacc ggtagcccgt ttaccgctat cggtgcgagc cgtgaagcga
    36841 tgcttggcgt gctggtcgaa ccgatgttgc tgcttggtct gtgggttgcc gcacaggttg
    36901 ccggttccac caacatcagc aacattaccg acaccgttta tcactggccg ctgagccaaa
    36961 gcatcccgct ggtgctggcg ctctgcgcct gtgcgttcgc cacttttatc gaaatgggca
    37021 aactgccgtt cgacctggcg gaagccgagc aggagttgca ggaaggtccg ctctctgagt
    37081 atagcggcag cggctttggc gtcatgaaat ggggtatcag cctgaaacag ctggtggtgt
    37141 tgcagatgtt cgtcggggtg tttattccgt ggggacaaat ggaaaccttc accgccggtg
    37201 gactgctgct ggcgctggtg attgcgatcg taaaactggt ggtcggcgtc ctggttatcg
    37261 cgctgttcga aaacagcatg gcccgtctgc gtcttgatat tactccgcgc attacctggg
    37321 ctgggtttgg ctttgcattt ttagcgttcg tctccttgct ggcggcgtga ttaaagagag
    37381 tttgagcatg tctgaagaaa aattaggtca acattatctc gccgcgctga atgaggcatt
    37441 tccgggcgtc gtgctggacc acgcctggca gaccaaagat cagctgactg tcaccgtaaa
    37501 ggtgaactat ctgccggaag tggtggagtt tctctactac aagcaggggg gctggctgtc
    37561 ggtgcttttt ggtaacgacg aacgcaaact gaatggtcat tacgccgttt attacgtgct
    37621 gtcgatggag aaggggacta agtgctgggt aacggttcgc gtcgaagttg atgccaacaa
    37681 accggagtat ccgtccgtga cgccgcgcgt tccggcggcg gtgtggggcg agcgcgaagt
    37741 gcgcgatatg tacggtttga ttccggttgg tctgccggat gaacgccgtc tggtgctgcc
    37801 ggatgactgg ccggatgaac tttatccgct gcgtaaagac agcatggatt atcgtcagcg
    37861 tccggcaccg accaccgatg ctgaaaccta cgagttcatc aacgaactgg gcgacaagaa
    37921 aaacaacgtc gtgccgattg gtccgctgca cgtcacttct gacgaaccgg gccacttccg
    37981 tctgttcgtc gatggcgaaa acattatcga cgcagactac cgcttgttct atgtccatcg
    38041 cggtatggaa aaactggcgg aaacccgcat gggttataac gaagtgacct tcctctctga
    38101 ccgtgtgtgc gggatctgcg gcttcgccca cagcaccgcc tacaccacgt cggtggaaaa
    38161 cgcgatgggt attcaggtgc cagaacgtgc gcagatgatc cgcgccattc tgctggaggt
    38221 ggaacgcctg cactcgcatc tgctcaacct cggcctcgcc tgccacttta ccggcttcga
    38281 ctccggcttt atgcaattct tccgcgtgcg tgaaacctcc atgaaaatgg ccgagatcct
    38341 caccggtgcg cgtaaaacct acggcctgaa cctgatcggc gggattcgtc gcgatctgtt
    38401 gaaagatgac atgatccaga cccgccagct ggcgcaacag atgcgtcgtg aagtgcagga
    38461 gctggtggat gtgctgctga gcacaccgaa catggaacag cgcaccgtcg gcattggtcg
    38521 tctggacccg gaaattgccc gcgatttcag taacgttggc ccgatggtcc gcgccagcgg
    38581 acacgctcgc gatacccgcg ctgatcaccc gtttgttggt tatggcctgc tgccaatgga
    38641 agtccacagc gagcagggct gcgacgttat ttcgcgtctg aaagtgcgta tcaacgaagt
    38701 ctataccgcg ctgaacatga tcgactacgg tctggataac ctgccgggtg gcccgctgat
    38761 ggtggaaggc tttacctaca ttccgcaccg tttcgcgctg ggctttgccg aagcgccgcg
    38821 cggtgatgat atccactgga gcatgactgg cgacaaccag aagctgtacc gctggcgctg
    38881 ccgtgccgcg acctacgcga actggccgac cctgcgctac atgctgcgtg gcaacactgt
    38941 ttccgatgcg ccgctgatta tcggtagcct ggacccttgc tactcctgta ccgaccgcat
    39001 gactgtggtc gatgtacgta agaagaagag caaagtggtg ccgtacaaag aactcgagcg
    39061 ctacagcatt gagcgtaaaa actcgccgct gaaataagga atcgccatgt ttacctttat
    39121 caaaaaagtt atcaaaaccg gtacggcgac ctcgtcttat ccgctggagc cgattgcggt
    39181 tgataaaaac ttccgtggta agccagagca gaacccgcag cagtgcatcg gctgcgcggc
    39241 ctgcgtcaat gcctgcccgt caaacgcctt aacggttgaa actgacctcg ccacaggaga
    39301 gctggcctgg gagtttaatc tcgggcgctg catcttctgt ggacgctgcg aagaagtttg
    39361 cccgacggcg gcgattaagc tgtcgcaaga gtacgaactg gcggtgtgga agaaagaaga
    39421 cttcctgcaa cagtctcgct tcgcgctgtg caactgtcgc gtctgcaatc gtcctttcgc
    39481 cgtccagaaa gagatcgact acgccattgc gctgcttaag cacaacggcg acagccgcgc
    39541 ggaaaaccac cgcgaaagct ttgagacttg cccggaatgt aagcgccaga aatgcctggt
    39601 gccgtccgac cgtattgaac tgactcgcca tatgaaagag gccatctgat gagcaattta
    39661 ttaggccccc gtgacgccaa cggcattccg gtcccgatga cggtggatga atccatcgcc
    39721 agcatgaagg cgtcgttact gaaaaaaatc aaacgttctg cctatgttta ccgcgtggac
    39781 tgcggcggct gcaacggctg cgaaatcgaa attttcgcca ctttatcgcc gctgtttgat
    39841 gcagaacgct tcggcattaa agtcgttcct tcaccgcgtc atgcggatat tttactgttt
    39901 accggcgcgg tcacccgtgc aatgcgatcc cctgcgctgc gtgcgtggca gtccgcgccg
    39961 gacccgaaaa tttgtatctc ctacggtgcc tgcggtaaca gcggcgggat cttccacgat
    40021 ctctactgcg tgtggggcgg tacggataaa attgtccctg tggatgttta tatccctggc
    40081 tgcccgccaa cgcctgccgc cacgctgtac ggctttgcaa tggcgctcgg cctgctggag
    40141 cagaaaattc acgcccgtgg gccgggtgaa ctggatgaac aaccggcgga gatcctgcat
    40201 ggcgatatgg tgcagccgct gcgcgtgaaa gtggatcgcg aagcacgccg cctggcgggt
    40261 tatcgttacg gtcgtcagat tgccgatgac ttcctgacac agttagggca gggcgaagaa
    40321 caggttgcac gctggctgga agcggaaaac gatccgcgtc tgaacgagat tgtcagccat
    40381 ctgaatcatg ttgtagaaga ggtgcgtatc cgatgagtga aaaggtggtg ttcagtcaac
    40441 tgagccgtaa atttattgat gagaacgatg ccacgcccgc cgaggcgcag caggtggtct
    40501 attacagcct ggcgattggt caccaccttg gggttatcga ttgcctggaa gcggcgctca
    40561 cctgcccgtg ggatgaatat ctggcatgga ttgccactct ggaggcgggc agtgaagccc
    40621 gccgcaaaat ggaaggcgta ccgaagtacg gtgagatcgt catcgacatt aaccatgtgc
    40681 cgatgctggc caacgcattc gataaagccc gggcagcgca aacttcgcag cagcaggaat
    40741 ggagtacaat gctgttaagt atgctgcatg atattcatca ggaaaacgcc atctatttga
    40801 tggtgaggag attgcgtgac tgacgtttta ctctgtgttg gcaatagcat gatgggcgat
    40861 gatggcgcag gtccgctgct ggcggaaaag tgcgccgccg cgccgaaagg taactgggtg
    40921 gtgattgacg gcggtagtgc accggaaaac gacatcgtcg ccatccgtga actgcgccct
    40981 acgcggttac tgattgtcga cgccacggat atggggctaa accccggcga gatccgcatc
    41041 atcgacccgg atgatatcgc cgagatgttt atgatgacta cccataacat gcctctgaac
    41101 tatcttatcg accagttgaa agaagatatt ggcgaagtga ttttcctcgg catacagccg
    41161 gatatcgtcg gcttttacta cccgatgacc cagccgatta aagatgcggt agaaaccgtt
    41221 tatcaacgac tggaaggctg ggaagggaat ggcggcttcg cgcagttagc ggtggaagaa
    41281 gagtagtttt tcattaagga atcaggacag ggatgttctt gatggggtga accagctctg
    41341 atgccaaatg ctaaattgcc cgatgcgctg cgcttatcgg gccttcctgg ttcgtgcgac
    41401 atgtaggccg gataaggcgt tcacgccgca tccggcactg ttacttactc taaatcttcc
    41461 ccattactgg caatcacttt tttataccac cagaacgatt tcttacgtgt gcgcgtcagc
    41521 gtgccgttgc ctgcgtcgtc acggtctacg tagacaaaac cgtagcgttt gctcatttca
    41581 cccgtagagg cggaaactaa atcaatacag ccccatgtgg tgtagcccat cagcggaatg
    41641 ccatctgcaa tcgcttcgcc cattgcgcgg atatgttcgc gtaaatagct gatgcgatag
    41701 tcatcgttaa tctcgccatt ggcagcaagt tcatcttttg cgccgaggcc gttttccacc
    41761 agaaacagcg gcttctgata acgatcgtac atcatattca tggtgatacg cagaccgagt
    41821 ggatcaattc cccagcccca gtcgctcact tgcagatacg ggttacgcag cgatttcacc
    41881 acgttcgccg cactgctgtt gttggcgttc atctccgccg aggcgcagcg cgaggcgtaa
    41941 tagctgaaag agacaaaatc gacggtgttt ttcaggatct catcatcgcc cagcgcttta
    42001 tctatggtta cccctttttc gcgaaatacg cgggcagagt aagccggata cgcgccgcgc
    42061 gcctgcacat cgataaaaaa caggttttcc cgatctttct ccagcgccgc ccagacatct
    42121 tccggtttgc agctgtaagg gtagaagttg ccgcccgcca gcatacagcc cacctgattt
    42181 tgcgggttaa cctcatgggc gattttggcg gctagcgcac tggcaaccag ctggtgatgc
    42241 gcggcctgat atttcacctg atcctgattt tcaccttctt caaacaccag acccgcgccg
    42301 gagaacgggc tatgcaacat aatgttgatt tcattgaagg ttagccagta tttcaccaga
    42361 ccatcaaatg cttcaaagca ggttctggcg tagcggctga aaaactccac cagcttgcgg
    42421 ttacgccagg agccatattc ggtgaccaga tgcatcggca catcgaagtg gcacaacgtg
    42481 accagcggtt cgataccgta ctttttacac tcttcaaaga cagaacgata aaaagcaatg
    42541 ccctgctgat tgggcgtgac ttcatcgccc tgcggaaaga gacggctcca ggcaattgag
    42601 gtacggaaaa ccttgaatcc catctctgcc atcagggcga tatcttcttt ataacgatga
    42661 taaaaatccg tcgcctcatg gctgggataa aactcgtcat cgcgcaactg aaaacgtttt
    42721 tccagcccca gtttcaccgc cattcgatgc tcgccgtgtg ggatcatatc gacggtggtc
    42781 agcccttttc cgccttcacg gaacgcacct tcagactggt tggcggcaag cgcgccgccc
    42841 cataaaaaac cttctggaaa tactgacatt ttcatcctca attaagactt acttctttgg
    42901 cgacggtcgg ttgtacgctc tgatgctttc gcgcctgggc agccgcttcc tcaacaggaa
    42961 tatcctcaaa gccgagcaac agtgtgagga taaacgacag caccaccgcc agcgccatga
    43021 ccgcgaacac ccagacgatg ctcattggat tcgccggatc gaagaattgc acgctggtaa
    43081 atagccccgg cgctgccatt gagtggctgg caagccccgc cataccggca accgcgccgc
    43141 aaataaaacc gctgataaga ctggcgataa gcggacgttt caggcggatc gccacgccgt
    43201 ataacgccgg ttcggaaatc cccgccataa tggctgatgc cgccgcagcc agcgccgtct
    43261 ggcgcagttc cgggtttttc gttttccacg ccaccgccag tgatgaaccg cccagcgaca
    43321 ggttagcgcc gatctctgac ggcatgacca tcccttcttt gccggtttcg gcaatggtct
    43381 gaatgatggt tggcgtaaag acgcggtgca tcccggtcat taccagcaga ggccacagcg
    43441 cgcccataat ggcgactgaa agccagccca gataaccatg aatgctgtaa accagcgccg
    43501 aaatggcgct accgatccag ataccaatcg ggccaatcag caggattgcc agcggtgcgg
    43561 caatcaacac aatcagcatt ggcttgagga agtttttggt caccgccggt gtaatgcgat
    43621 ccacccagcg ttcgatatat gacaggcacc aggtcatcac cagcgccggg atcactgtgt
    43681 aggtgtattt caccgcggtg accggaatca gggcaaattc gacatgttca ccctgggccg
    43741 ctttcgccat cagttcaata aaactcggat gtaccagcac acccgcgatg gcaatcgcca
    43801 gcgacatatt ggttttaaat ttgatgtcgg cagatgccgc gaccatcagc ggcaggaaga
    43861 agaaagcacc gtcaccaatc acattcagaa tggttaaggt cggcgatcct tttgtcagca
    43921 cgccgctcat ctcgaggatc atcgccagca gtttgaccat cgatccgccg ataatcgccg
    43981 ggatcagcgg tgacatggtg ccgatcagcg catcgaggat ccccgcacca atgcgacgcg
    44041 gcgtgagttt gggtttaccc acgggctgtg cgggctgcat atctcccggc agcaggctga
    44101 cgacttcctg aaaggcttgt gaaacggtat tgccgataat cacctgacac tggttgtcac
    44161 tacgtaccac gccgagcacg ccggggatgg tttttaacgt cgggctgtcg ataagctggt
    44221 catctttgat aacaaagcgc aaacgcgtca tacagtgcgt gaccgccgag atgttatcaa
    44281 cgccgcccag tgccgctatc tccgagcgtg ccagcgccgc ataatttttg gccatcggat
    44341 tttatcctgt tatcagtagg gtagatgtag ttgttatcag tcgacgtaac ggaaaaatgc
    44401 cgatgctgaa acggaattag gaaaccggtt tcacaaaatc atgaatagtt gtcactaaat
    44461 aagcaagaga gttaattatt cattttttat atttgtgaaa ccggtcacct gaatattttt
    44521 cccgccgatt gcgcaaggac aatcggcaaa cggtgcagta cactgcgttg attgcgtgta
    44581 aagggatgaa aatgatgacg acgatgctgg aagtggcgaa gcgcgccggg gtttcaaaag
    44641 cgaccgtttc ccgcgtgctt tcaggtaatg gctacgtcag ccaggagact aaagatcgcg
    44701 tgtttcaggc ggtagaagag agcggttacc gcccaaactt gctggcgcgc aatctgtcgg
    44761 cgaagagtac tcagacgctg gggctggtag tgaccaacac gctttaccac ggcatttatt
    44821 ttagtgaatt actctttcat gccgcgcgaa tggcggaaga gaaagggcgg cagttgctat
    44881 tggcagatgg taaacacagc gccgaagaag agcgccaggc gattcagtat ctgctggatt
    44941 tgcgctgcaa cgccattatg atttacccgc gttttttaag cgtggatgag atcgatgaca
    45001 tcattgacgc gcacagtcag ccgataatgg tgcttaatcg ccgcctgcgc aaaaacagca
    45061 gccatagcgt ctggtgcgat cataaacaga ccagctttaa tgccgtggca gagttgataa
    45121 acgccggaca tcaggagatt gctttcctta ccggctcgat ggattccccc accagcattg
    45181 aacgtcttgc tgggtataaa gacgcgctgg cgcagcatgg tattgcgctc aatgaaaaac
    45241 ttatcgctaa cggtaaatgg acgcccgcca gcggggccga aggggtagaa acgttgctcg
    45301 aacgtggggc taaatttagc gcgttagttg ccagtaacga cgatatggcg ataggtgcga
    45361 tgaaagcgtt gcacgagcgc ggcgtagcgg tgccagagca ggtgtcagtt atcggattcg
    45421 atgatatcgc aattgccccc tatatcgttc cggcgctctc cagcgtaaaa attccggtga
    45481 ctgagatgat tcaggaaatt attggacggc tgatttttat gctcgatggc ggggatttct
    45541 caccgccgaa aaccttcagc ggaaaactga tccaccgcga ctcactcatt gctctttcgc
    45601 gataaacatt gtcatcacat gtcatcgtca ctagtgtcga tgacatcttt tttcctgcat
    45661 tacagaaatt aatttcctta aataacagta aattaaaaac tggcatgatt tgtgaatgta
    45721 tcggcgcatt aactgtcatt gctggagaat ttgatgaacc gtttcatcat tgctgacgcg
    45781 agtaaatgta ttggttgccg tacctgtgaa gtggcgtgcg tggtttctca tcaggaaaat
    45841 caggactgtg catcgctgac cccggaaaca tttttaccgc gtatccatgt cattaaaggt
    45901 gtgaacattt ccacggcgac agtttgccgt cagtgtgaag atgcaccgtg cgctaacgtc
    45961 tgcccgaatg gtgctatcag ccgtgataaa gggtttgttc atgtgatgca ggaacgttgc
    46021 attggttgca aaacctgcgt tgtggcttgc ccgtatggcg cgatggaagt ggtggtacgt
    46081 ccggtgattc gcaacagcgg cgcggggctg aatgtacggg ctgacaaagc cgaagccaat
    46141 aaatgtgacc tgtgcaacca tcgtgaagac ggcccggcgt gtatggcggc ttgcccgact
    46201 catgcgctga tttgtgtcga tcgtaataaa cttgaacaac tgagtgcaga aaaacgccgc
    46261 cgtacggcgc tgatgttcta aaaatcttac agaactgttc tggcatcaaa ggaattcccg
    46321 gaaatattcg tagaatacgg agcaggcggt atcgccgacc tgtgactgcc ggatgcgacg
    46381 ctgtcgtgtc cggctgggcg ggttacgcaa ttcatgatgg cgggaataac tcaatggcaa
    46441 aaaacacatc ttgcggtgtc caactgcgta ttcgtggcaa agtgcagggc gtcggttttc
    46501 gtccgtttgt ctggcagctg gcacagcaat taaatcttca cggcgatgtc tgtaatgacg
    46561 gcgatggcgt agaagtccgg ctgcgggaag acccggaaac gtttcttgtt caattgcatc
    46621 agcactgccc gccgctggcg cgtattgata gcgtcgagcg tgagccgtac atctggtcac
    46681 aactgcccac tgagttcacc atccgccaga gcgcgggagg tgccatgaat acgcaaattg
    46741 tcccggatgc cgctacttgc cctgcttgcc ttgccgaaat gaatacccca ggcgaacggc
    46801 gttatcgtta tccgtttatc aactgtaccc actgcggccc gcgtttcacc attattcgcg
    46861 ccatgcctta cgaccgcccg tttaccgtga tggcggcgtt tccgttgtgt ccggcttgtg
    46921 acaaagagta ccgcgacccg ctcgatcgtc gcttccacgc ccagccggtg gcctgcccgg
    46981 agtgtggccc gcatcttgaa tgggtaagtc atggtgaaca tgcagaacaa gaggcggcat
    47041 tacaggcggc tatcgcacag ttaaaaatgg gcaacattgt cgccatcaaa gggattggcg
    47101 gatttcatct tgcctgcgat gcacgtaaca gtaacgcggt ggcgacactt cgggcgcgca
    47161 aacatcgccc ggcgaaaccg ctggcggtca tgttgccagt ggctgacggt ttaccagacg
    47221 ctgcgcgcca gttgcttacc acgcccgccg cgccgattgt gctggtggat aaaaaatacg
    47281 ttcctgagct ttgtgatgat atcgcccctg accttaacga agtcggggta atgttgcctg
    47341 cgaacccgct ccagcatttg ctgttacagg aactgcaatg cccgctggtg atgacctccg
    47401 gcaacctgag cggtaaacca ccagctatca gcaacgaaca ggcgctggcg gatttgcagg
    47461 gcattgccga cggattcttg atacataacc gcgacatcgt gcagcggatg gatgattcgg
    47521 tggtgcgcga aagcggcgaa atgctgcgcc gttcgcgggg gtatgtgccg gatgcgctgg
    47581 ctttgcctcc gggctttaaa aatgttccgc ctgtgctgtg tctcggagcg gatctgaaaa
    47641 ataccttctg cctggtgcgc ggtgaacaag cggtgttgag tcagcatctg ggcgatttaa
    47701 gtgacgatgg catccagatg cagtggcgcg aagcgttacg cctgatgcaa aacatctacg
    47761 attttacccc gaaatacgtt gtgcatgacg cgcatccggg ctatgtctcc agccagtggg
    47821 cgcgtgaaat gaatctgccg acgcaaacgg tactgcatca tcatgcccat gcagcggcgt
    47881 gtctggcaga gcatcagtgg ccgctggatg gcggtgatgt cattgctttg acgctcgacg
    47941 gtatcggtat gggggagaac ggcgctttgt ggggcggcga gtgcctgcgg gtgaactatc
    48001 gcgaatgtga gcacctgggc ggcttgcctg cagtggcgct tccgggtggc gatttggcag
    48061 cgaagcagcc gtggcgaaac ctgctggcgc agtgcctgcg ctttgtgccg gagtggcaga
    48121 attaccctga aacagcaagt gtgcaacagc aaaactggag cgtgctggcg cgggccattg
    48181 agcgtggaat taacgcgccg ctggcgtcat cgtgtgggcg gttgttcgat gcagtggcgg
    48241 cggcactggg ctgtgcgcca gccacgttaa gttatgaagg tgaagcggct tgtgctctgg
    48301 aggcgctcgc agcctcatgc cacggagtga cgcatccggt gacgatgccg ctggtggaca
    48361 atcaactgga tctcgccgct ttctggcagc agtggctgaa ctggcaggca caggttaatc
    48421 aacgcgcgtg ggcgtttcat gatgcgctgg cgcagggttt tgccgcgttg atgcgtgagc
    48481 aggccacgat gcgtggtatc actacgctgg tatttagcgg cggggttatt cataaccgtt
    48541 tgctgcgtgc acgtctggcg cattatctcg ctgatttcac attgctcttt ccacagagtt
    48601 taccggcggg tgatggcggt ttgtctctgg ggcagggggt tattgctgcg gcgcgttggt
    48661 tagcgggtga agtccagaac ggataaaacg tgttgcattt ggacaccatt gccggatgcg
    48721 gcgtaaacgc cttatccggc ctacacatgc gtccccgtag gtcggataag acgcgctagc
    48781 gtcgcatccg acattttagg cacagtagcc cacctacatc ggcaatgttt tcaacaatcc
    48841 aaatgcctct ttcatccgat cctcactgac cacaaaggcg cgaagctggt cagcatcgtc
    48901 aacaccgcga gccaccattc cctagcgttc ggtattaatt tgccagcgta aatcctgacg
    48961 ctgggtttcg cctgccagat gcagcggtaa ttccggcgtt ttgattttca ccagcatcgt
    49021 cggtagtttc agcggcgtgt tattgccgag aagatttttt gccagcacca tcgcgctaag
    49081 ttgaatcggc tgcaggaatg gcagtacctg accgttgatt tccgcgtaat cgcccagcgc
    49141 ataaatatcg tcattactgg tttgcagata actatcgacg caaacgccgc gattaatcgt
    49201 cagcccggcg cgtcgtgcca gggctgtttc cgggcgcagt ccggtggcgg caattaccgc
    49261 atccacttcg atactacgct ggtggtccag cgttgccaga atgccagaat ccgttttttc
    49321 cagcccctgt aactgagatt tcaacagcag atgaacgccc atctccgtca accgatgctg
    49381 caagcggctg cttacttccg gtggcattaa cgacgccaga atactggcag cgttgtcgat
    49441 tagcgtgacc gctttgcctg cacgacaaaa atccatcgcc agttcgctac caatcaaacc
    49501 accgccaaca atcaacacgc gtcgggcatc ccgcagttgc gtttcacagg cgcgatactc
    49561 ttgctgacta tttaacgtca gcattaactc acgcccaggc acaggcggga caaaggcact
    49621 ggcaccggtt gccagtacta gcttgtcgta ttgccactga ttattctggc ttttcaccac
    49681 acgggcttcg gcatcgatat ccgtcaccca ggtttgtgga aacaggtgca gattaaactg
    49741 ctcggcaaat tcacccgccg tctggcgggt aaggtcatcg gcacgttgcc cctgactgat
    49801 aacatggctg aggtcaggtt tgttgtactc atccatgctg tcggcggcaa tcagggttaa
    49861 tggaatagtg gcgtcctgtt tgcgaatatt tttcaccagt tggcgggcgg cgaagcccga
    49921 accgatgatc acaatgccgt tactcatttt gcctccgatg ccagttcttc aaagacgtct
    49981 ttgccgaggg agcattccgg gcagaggaag ttatccggga cttcactcca cggcgttcct
    50041 ggcgcaacgt cctgcattgg ctcgcctttt gccggatcgt aaatccactg gcagacgctg
    50101 cactgcatcc gtgggccgag gtcagccgtc gtggtggcag aggtttcttc tttgactacc
    50161 ttattcaccg tgctctgcgg cagcggcgcg agcgcccact gacgggcgat ttcgcgaccg
    50221 tgttcacggc ataactccag agcgtcctgg tctggtcgcc atttcgcttt caggctaagc
    50281 gacatttcga aacccgcatc ctgcaggcgc gtggaaagac gatccaccgc accgccgctc
    50341 cagccgtgag agccgaaagc actggcgcgt ttgttacgga agcgtaaacc agtcatctcc
    50401 tccaccagcc cggcgatttt cggcatcatc acgttattca tcgtcgaagt gccgaccagc
    50461 acgccttttg agcggaagac attggtcagg atttcgtttt tatcgcttcg ggcgacgttg
    50521 aaaattttca ccgccacgcg tgggtcggtt tccgcaatcc cctgggcgat agcgtcagcc
    50581 atcatgcggg tgttattcga catggtgtcg tagaaaatgg tgattctgtc ttcctgataa
    50641 tcagccgccc atttcaggta cagctcgaca atttgcgtcg ggttatcgcg ccataccacg
    50701 ccgtgagagg tcgctatcat atcgactggt aagttaaagc ccaggatctc ggtaattttc
    50761 ggtgttacca ggcggctgaa cggcgtcagg atattggcgt agtaacgctg gcactgctcg
    50821 aaaagctccg tctgatccac ttcatcgttg aacagatgct cgtcgcagta gtgctgaccg
    50881 aaagcatcgt tactgaacag caccgcgtcg cctgtcaggt aagtcatcat gctgtccggc
    50941 cagtgcagca ttggcgtttc gacaaaaatg agctgtttgc cgttgccgat atccagcgtg
    51001 tcaccagttt tcaccacatt aaaattccac tccggatgat ggtgatgacc atttatcgag
    51061 tcgatagcgt tggcagtaca gtaaatcggc gtatcgggaa tttgcgccat cagttcggtc
    51121 agcgccccag cgtggtcctc ttctgcatgg ttaatcacga tgtaatcgat atccgccaga
    51181 tcgatttcat tacgcaggtt ctgcacaaat tcgcggctga atttatggtc gacggtgtcg
    51241 atcagcacgt ttttttcttc gcggatgagg tagctgttgt aactgctgcc gcgcagcgtt
    51301 ttatattccg taccgtgaaa atcacgcact tcccagtcac gttgaccaac ccaatgaatg
    51361 ttatttttca ccacaataga catagcaacc tcaatttatt cagcgtgttc taaaaagatg
    51421 tcttgctaat tgcagattac gtgccagttt tttatctgat tgtttttact ctataaataa
    51481 aattatgctc attaatgagt agtcaaaatg actatcaatc aaatggtcga tatgacaata
    51541 tctatagtca aattgacagt gaggcaaaga tgagtttttc cgttgatgtg ctggcgaata
    51601 tcgccatcga attgcagcgt gggattggtc atcaggatcg ttttcagcgc ctgatcacca
    51661 cgctacgtca ggtgctggag tgcgatgcgt ctgcgttgct acgttacgat tcgcggcagt
    51721 ttattccgct tgccatcgac ggtctggcaa agggtgtact cggtagacgc tttgcgctgg
    51781 aagggcatcc acggctggaa gcgattgccc gcgccgggga tgtggtgcgc tttcccgcag
    51841 acagcgaatt gcccgatccc tatgacggtt tgattcctgg gcaggagagt ctgaaggttc
    51901 acgcctgcgt tggtctgcca ttgtttgccg ggcaaaacct gatcggcgca ctgacgctcg
    51961 acgggatgca gcccgatcag ttcgatgttt tcagcgacga agagctacgg ctgattgctg
    52021 cgctggcggc gggagcgtta agcaatgcgt tgctgattga acaactggaa agccagaata
    52081 tgatgccagg cgatgccacg ccgtttgaag cggtgaaaca gacgcagatg attggcttgt
    52141 cccctggcat gacgcaactg aaaaaagaga ttgagattgt ggcggcgtcc gatctcaacg
    52201 tcctgatcag cggtgagacg ggaaccggta aggagctggt ggcgaaagcg attcatgaag
    52261 cctcgccacg ggcggtgaat ccgctggtct atctcaactg tgctgcactg ccggaaagtg
    52321 tggcggaaag tgagttgttc gggcatgtga aaggagcgtt tactggcgct atcagtaacc
    52381 gcagcgggaa gtttgaaatg gcggataacg gcactctgtt tctggatgag atcggcgagt
    52441 tgtcgttggc attgcaggcc aagctgctga gggtgttgca gtatggcgat attcagcgcg
    52501 ttggcgatga ccgtagtttg cgggtcgatg tgcgcgtgct ggcggcgact aaccgcgact
    52561 tacgcgaaga ggtgctggca gggcgatttc gcgctgactt gtttcatcgc ctgagcgtgt
    52621 ttccactttc ggtgccgccg ctgcgtgagc ggggcgatga tgtcattctg ctggcggggt
    52681 atttctgcga acagtgtcgt ttgcggctgg ggctctcccg cgtggtatta agtgccggag
    52741 cgcgaaattt actgcaacac tatcgttttc cggggaacgt gcgcgaactg gaacatgcta
    52801 ttcatcgggc ggtagtgctg gcgagagcca cccgcaacgg cgatgaagtg attcttgagg
    52861 cgcaacattt tgcttttcct gaggtgacgt tgccgccgcc agaagcggcg gcggtgcccg
    52921 ttgttaagca aaacctgcgt gaagcgacag aagcgttcca gcgtgaaact attcgccagg
    52981 cactggcaca aaatcatcat aactgggctg cctgcgcgcg gatgctggaa accgacgtcg
    53041 ccaacctgca tcggctggcg aaacgtctgg gaatgaagga ttaaataatc ccggcctgat
    53101 agaaatcctg caggttaatt gcgccggtga gtttgccgtt ttcatccacc accggtgcgg
    53161 cagtgatttt gcgcttcatc aggatctctt tggcgtcgat ggcgcgactt tgcgcctgta
    53221 acgtggtgcc gcctgtcgtc atcgcttcat taactggcgt ggtgagtgcg ccgccgccta
    53281 ccagccagcg acgtaaatcg ccgtcggtaa agacgccttg tacctgttgt tgagcgtcac
    53341 ataccgccac cagccccaga ccggtgcggc tgagttccag catcgcatcc atcacgctgg
    53401 cggttaacgc cacctgtggg atggcatcgt cacggcgcat cagatgatgc actttattca
    53461 gcaagcgagc gcccagtgcc ccggctgggt gggagcgggc aaaatcttct tcattaaatc
    53521 cgcgcgcctg catgaccgcc atcgccagcg cgtcacccat catcagggta ttgacggtgc
    53581 tggaggtcgg cgcaaggtgc atcgggcagg cttcgcgttc tacggagata tccagcaccg
    53641 cttttgccgc caggcccagc ggtgacgtcg gtttgccggt catcgccagc agcgcgatag
    53701 atttatcttc cagacgcgga ataatcagat ccagttcctt cgcgccaccg gagtaagaga
    53761 taaacagcat cacatcgcgg ctttcaatca tccccagatc gccgtgcagt gcttctgccg
    53821 gatggacaaa aaaagccggt gtgccggtac tggcaagtgt tgcggcgatt ttcttaccaa
    53881 tgtggcccga tttgccaatt cccgaaacca ccactttgcc ttcgcagtgc aggatgatat
    53941 tggcggcgcg aacaaaatca tcgcccagac gttccggtaa acggcttgct tcctgcaact
    54001 ccagcattaa cgtctgacgt cccgcgttca gtagtgcttc actcattgct ctctccggtt
    54061 atgatcacat cgatcccttt ctcttccagc gcctgacgaa acgccggatc gatacctgcg
    54121 tcggtaatca gcttatcgac gctttcaaga ctgcaaacta cgttggggct tttacggcca
    54181 aactttgatg agtccgccat caaaatcact tcgcgcgcgg cattgcacat tgccttactg
    54241 acggtataaa cctcgttgaa ggtggttacg cccgcattga gatcgatgcc gtcggtgccc
    54301 ataaacaatt tatcgaaact gaaatgttcg aaggcattct ctgccagctg tccgtgaaat
    54361 gaggccaatt ttttacgaaa cgttccgcct ggcatcagga tagtttgttc gttatccagt
    54421 tcggatagcg cattgacgat atgcaggctg ttggtcatca ccgtgatgtt attaaagcgc
    54481 gagagcaggg gaaccatctg caaaacggta ctgccagcat caagaatgat cgaatcgcca
    54541 tcatggataa aactaacggc agcttctgca atcagctctt tcttgtgggt gttgatgagt
    54601 gttttatgat cgataggcgg atcggattcc tctttattca acaccactcc gccataagta
    54661 cgaatgacgg ttccggcatg ttccagaatg accagatctt tgcgaatggt tgtgcctgtg
    54721 gtgtcaaagt attgcgccaa ttcttcaacc gagcatttac cctgcttttg cagatactcc
    54781 agaatggcgg cctgacgctg acgaggtttc atgggcgtga ttacctgatt taggtttcaa
    54841 aatgataact tcgcaagcaa gtaacattca caacgaaatt atccacgttt cagtttaagc
    54901 gccaatgata gagcattctg tgatagtgga tcatggggaa agatcacatc gggctgtaaa
    54961 tcacccgcat gcataccggt aattgcggga attttttgcg gtcgggcgaa gacggtcagt
    55021 cctttcataa acaaggtgtc gacgatgcgc tgctgatcgt ccagccgatg gcgaccacga
    55081 cccgcggttt aaagcgcccg ctggaacgac ccacgccaac ccgcccttgc tggcatagtg
    55141 tgtcgaaggc acggttaaaa cgagaaattt gccagccgcc taaggccagt tgcgcacacc
    55201 aggcgataac ggcgacggtg atgagtgcgg ataccataac ttttccttaa tgtagtggcg
    55261 gaagtcctgt atgcctgatg agcgtagcgc atcaggcatt ctatagtctc acggagatcc
    55321 ttaatggatc tccgctgttg atcagaacat cacctgaccg ccggtgacat tgatcgactg
    55381 tccggtgcag tacgacgcct taggactggc gtagaacagc agcatattca gcacatcttg
    55441 ataatcgcag ccgcgtttga gcggtacttt gtcaatgtaa tactgctcga cttgatccgg
    55501 tttgataccc agcttggtcg cgtattgtgg caacagtgac tggaacatcg gcgatttcag
    55561 caggttaccg agcatcagtg aatgcaccgt aatgccgtac tccaccagat ccagcgccag
    55621 tgattgagtc agcccgacgc caccaaattt cgctgcgctg tagccagagt tgtgtttgct
    55681 gcccactttg ccggatttcg agttgatctg aataatgcga ccctgaatcc cgtcgcggat
    55741 catcaaacgc gaaaattcac gggcacacag gaaataaccc accagattca cttgtagcga
    55801 acggtcaaaa tcgccgagct ggaagtcgct gataaaggct gcttttgcta ttccggcgct
    55861 atagaccagc aaatccacgc gaccaaagat ttcatctacc ccacgagaga gcgccagaac
    55921 gctttgctcg ctagtggcgt cagcaccaaa accgtacgcc atactttcac catattcggc
    55981 gttaatttct tgtgccacat ttgcggcttt gtcgctctga atatcgacaa ccgcgacgcg
    56041 atacccctcg gcaaccagac cgtggcacag gaacgcgcct aaggtttgcc caccaccgat
    56101 gacaacggca acctgattca ttttttactc cttaacagat tcaaacttca aaaccgatcc
    56161 cggcgcgata tcgtcgggta cagggcctgc cacatggaca gtgcccggaa attccgcttc
    56221 gtttaaacca tcgaagcgca gggtgacatg acccagttcg cgaaggttgt cttccgccac
    56281 gctgccaaca gcggtcaccg gatagcgatg ctgcccgagc gtaaattgca aaccgggatg
    56341 gagtgcacct ttcaactcgc cgtggcaatg aatgaagcaa tactcttcga ggtccgctgg
    56401 cgcgccttca cgaaaggtga tgagcatctg gtcgctgagg gcgtcagtgg cactcgcgcc
    56461 gatacgggtg atggtggtct tataaataac ggtcatgttt cagcctctat tgatagataa
    56521 aaccggagac aaaccaggcg atcagtacag tcggtgcgcc ggttaaaaag cggctcacca
    56581 gtacagaagg gacaccgacg cgaaccgtgt cctgacgggc ttccgccagc gacaaaccga
    56641 ccgggatgaa gtcgcaggcc gcctgcgcgt tgatggcaaa cagtgccggt aaagccagat
    56701 gcggcggaat attgccgaga ccaatctgca cgccaatcaa tacgccgata acctgtgcga
    56761 taactgcgcc tgggccgagg aaaggtgaaa gcagtgggaa ggagcagatg agcgccagca
    56821 tgaccagacc cagtggatgg ctcgccagcg gagcaagacc gtgggcaatc cagtcaccaa
    56881 ggccagaagc cataatgatg ccaatgagcg ccgagacgaa tgccataaac ggcagaatgg
    56941 tttttaatac agtgtcgatg gtgtcacgac cagattgaaa cagcaccgca acggcggacc
    57001 ccatgcccat tcccaccttc gccagtaaac catcgctttg ttcggtgatt ttcttactgg
    57061 tgtcatagtc acggcccacg gaagagggtt gtggtgtcgc atcacccact acagtgatgt
    57121 tttcttcttt tacgccagag acataaatat cttccacaat gtactgcgcc agcggaccgg
    57181 acttgcccgt cgagtggata ttaatggtgg gaatacgtcg tttcggatag atgccgcagc
    57241 gtaatgtgcc gccacagtcg attaccgcga caccaatttc cgcctccgcg ggttcacctt
    57301 ctttaaatcc gtcaatagcc tgccagccag taagttgtgc cagtttgtca acaatcgcag
    57361 gccgggtacc ggtggtgata tagacgattt ttttgcccgg cgtggcttcc agctcaagcg
    57421 ggccgcccca gccacccgtt cctttttcga tccgaatacg cgtcatgatg ttgctcctgc
    57481 caggtgaact ttttgttcaa gttgaatgcc catctttttc tcaaaaatgg cggtggtcag
    57541 atcggtcacc cagccgcgaa agaagttggt gaccagacca accagcagat agctcaccgc
    57601 cagtgggcca agtggcaggt tcagcgttgt cagaccgctg gcaatgccaa gataaacaaa
    57661 cagttcgcca gggttgatat ggggaaagag gccattcatt gagtggcagc tataagaggc
    57721 cgccgcgtag tagctgggtt tgtacttttc cggcataaag cgaccctggc ttaaggtcat
    57781 cggattgcaa aagacaaacg tgccaatgca cggtagcagc aggtaacggg aaacagggtt
    57841 accggcgcaa cgttgagcaa aacgttcaat acgatgctga ccgataaaat taatcagtgc
    57901 gttcatgata accagcaggc taatcaacag cggaagaatg ccggtcacca tcccggtaaa
    57961 cacctctccg cccttttgga acagcccgat aaaccactct gcaccatgag taatggtttc
    58021 tatcattgtt ctctccttca ggatttattg ttttattacc aaacggcaac ctaatctaat
    58081 cagattgaaa gatttaaaag tgttatttta atctaaaaat gaaagataaa tattttaatt
    58141 tggaagtttg agtaaaagga tagcgagggg aatgagttga gttatgtaaa gtccgtatcg
    58201 ggcagtgact accgcttcct tgtgcggggc gtgatgcttt accatacttg cccctggttg
    58261 aatctgttaa atggacccct catgttcaag cgtcgttatg taacattgct tccccttttt
    58321 gtgttgcttg ccgcctgtag cagcaagcca aaacctactg agactgaaac gaccaccgga
    58381 acgccgtctg gcggcttcct gcttgagccg cagcacaatg tgatgcagat gggcggcgat
    58441 ttcgctaata acccgaatgc ccagcagttc atcgacaaaa tggtgaacaa acacggtttc
    58501 gatcgtcagc agttgcagga aattctctcc caggcgaagc gtctggattc ggtactgcgg
    58561 ctgatggata accaggcacc aaccacatcg gtgaaaccgc catcaggtcc gaacggcgca
    58621 tggctgcgtt atcgcaaaaa atttattacg ccggacaacg tgcagaacgg tgtggttttc
    58681 tggaatcagt atgaagatgc gttgaatcgc gcgtggcagg tgtatggcgt accgccggaa
    58741 attatcgtcg ggattatcgg cgttgaaacc cgctgggggc gcgtgatggg gaaaactcgc
    58801 atcctcgatg cgctggcaac gctgtcattt aactacccac gccgcgcgga gtatttctct
    58861 ggcgagctgg aaaccttcct gctgatggcg cgcgacgagc aggacgatcc gctcaatctg
    58921 aaaggttcct ttgccggggc gatgggctac ggacagttta tgccgtcgtc ttacaaacaa
    58981 tatgcggtag atttcagcgg cgacgggcat atcaacctgt gggatccggt tgatgcgatc
    59041 ggtagcgtgg cgaactattt caaagcgcac ggctgggtga aaggcgatca ggtcgcggta
    59101 atggcaaacg gtcaggctcc aggcttgcca aatggcttca aaaccaggta cagcatttcg
    59161 cagcttgcca cggcaggttt aacgccacag cagccgctgg gcaaccatca acaagccagc
    59221 ctgctgcgtc tggatgtcgg taccggttac cagtactggt acggtctgcc gaacttctac
    59281 accattaccc gttataacca cagcacccat tacgcaatgg cggtctggca gttaggacaa
    59341 gccgtggcgc tggcgcgcgt gcagtaacta tttgcaagag gggggcgtga gcttccctct
    59401 ggctaatcag cttttttctg aatcctcctc gtaaaattgc aacgccaaca ccatcttcct
    59461 gacgaaagtg ctatcttgtc cggcataaat ttttgactga cagaggttgt gatgactgac
    59521 agtgaactga tgcagttaag tgaacaggtt gggcaggcgc tgaaagcccg tggcgcaacc
    59581 gtaacaactg ccgagtcttg taccggtggt tgggtagcga aagtgattac cgatattgcc
    59641 ggtagctccg cctggtttga acgcggattt gtcacctaca gtaacgaagc caaagcgcag
    59701 atgatcggcg tacgcgaaga gacgctggcg cagcatggcg cggtgagtga acccgtcgtg
    59761 gtggaaatgg tgataggcgc actgaaagcg gctcgtgctg attatgccgt gtctattagt
    59821 ggtatcgccg ggccggatgg cggcagtgaa gagaagcctg tcggcaccgt ctggtttgct
    59881 tttgccactg cccgcggtga aggcattacc cggcgggaat gcttcagcgg cgaccgtgat
    59941 gcggtgcgtc gtcaggctac tgcgtatgca ttgcagacct tgtggcaaca atttctacaa
    60001 aacacttgat actgtatgaa catacagtat aattacttca acagaacata ttgactatcc
    60061 ggtattaccc ggcatgacag gagtaaaaat ggctatcgac gaaaacaaac agaaagcgtt
    60121 ggcggcagca ctgggccaga ttgagaaaca atttggtaaa ggctccatca tgcgcctggg
    60181 tgaagaccgt tccatggatg tggaaaccat ctctaccggt tcgctttcac tggatatcgc
    60241 gcttggggca ggtggtctgc cgatgggccg tatcgtcgaa atctacggac cggaatcttc
    60301 cggtaaaacc acgctgacgc tgcaggtgat cgccgcagcg cagcgtgaag gtaaaacctg
    60361 tgcgtttatc gatgctgaac acgcgctgga cccaatctac gcacgtaaac tgggcgtcga
    60421 tatcgacaac ctgctgtgct cccagccgga caccggcgag caggcactgg aaatctgtga
    60481 cgccctggcg cgttctggtg cagtagacgt tatcgtcgtt gactccgtgg cggcactgac
    60541 gccgaaagcg gaaatcgaag gcgaaatcgg cgactctcac atgggccttg cggcacgtat
    60601 gatgagccag gcgatgcgta agctggcggg taacctgaag cagtccaaca cgctgctgat
    60661 cttcatcaac cagatccgta tgaaaattgg tgtgatgttc ggtaacccgg aaaccactac
    60721 cggtggtaac gcgctgaaat tctacgcctc tgttcgtctc gacatccgtc gtatcggcgc
    60781 ggtgaaagag ggcgaaaacg tggtgggtag cgaaacccgc gtgaaagtgg tgaagaacaa
    60841 aatcgctgca ccgtttaaac aggctgaatt tcagatcctc tacggcgaag gtatcaactt
    60901 ctacggcgaa ctggttgacc tgggcgtaaa agagaagctg atcgagaaag caggcgcgtg
    60961 gtacagctac aaaggtgaga agatcggtca gggtaaagcg aatgcaactg cctggctgaa
    61021 agataacccg gaaaccgcga aagagatcga gaagaaagta cgtgagttgc tgctgagcaa
    61081 cccgaactca acgccggatt tctctgtaga tgacagcgaa ggcgtagcag aaactaacga
    61141 agatttttaa tcgttcgtta ttgatgataa tagataatgt gtgcacggac ggtcccctcg
    61201 cccctttggg gagagggtta gggtgagggg aacaggccag cactggcgtg aaaaattact
    61261 ctcacctcga tcctctaacg aattgggcct gcgggaacat tctgcacact cattgactat
    61321 taaatctgtt tatcagcaaa acctgggtcg catctgcggc ccttttgctt ttttaagttg
    61381 taaggatatg ccatgacaga atcaacgtcc cgtcgcccgg catatgctcg cctgttggat
    61441 cgtgcggtac gcattctggc ggtgcgcgat cacagtgagc aagaactgcg acgtaaactc
    61501 gcggcaccga ttatgggcaa aaatggccca gaagagattg atgctacggc agaagattac
    61561 gagcgcgtta ttgcatggtg ccatgaacat ggctatctcg atgacagccg atttgttgcg
    61621 cgctttatcg ccagccgtag ccgcaaaggt tatggacctg cacgtattcg tcaggaactg
    61681 aatcagaaag gtatttcccg cgaagcgaca gaaaaagcga tgcgtgaatg tgacatcgac
    61741 tggtgcgcac tggcgcgcga tcaggcgacg cgaaaatatg atgaaccttt gccaactgtc
    61801 ttttcagaaa aagttaagat ccagcgtttt ctgctctatc gtggctatct gatggaagat
    61861 atccaggata tttggcgaaa ttttgccgac tgaacgcata cggtatttta cttcccagtc
    61921 aagaaaactt atcttattcc cacttttcag ttaccagccc ggcggttaag acacgctgga
    61981 gctggtggcg atatttcgtt agcttgattt caggataatt atgagcaaga gcaccgctga
    62041 gatccgtcag gcgtttctcg actttttcca tagtaaggga catcaggtag ttgccagcag
    62101 ctccctggta ccccataacg acccaacttt gttgtttacc aacgccggga tgaatcagtt
    62161 caaggatgtg ttccttgggc tcgacaagcg taattattcc cgcgctacca cttcccaacg
    62221 ctgcgtgcgt gcgggtggta aacacaacga cctggaaaac gtcggttaca ccgcgcgtca
    62281 ccataccttc ttcgaaatgc tgggcaactt cagcttcggc gactatttca aacacgatgc
    62341 cattcagttt gcatgggaac tgctgaccag cgaaaaatgg tttgccctgc cgaaagagcg
    62401 tctgtgggtt accgtctatg aaagcgacga cgaagcctac gaaatctggg aaaaagaagt
    62461 cgggatcccg cgcgaacgta ttattcgcat cggcgataac aaaggtgcgc catacgcatc
    62521 tgacaacttc tggcagatgg gtgacactgg tccgtgcggc ccgtgcaccg aaatcttcta
    62581 cgatcacggc gaccacattt ggggtggccc tccgggaagt ccggaagaag acggcgaccg
    62641 ctacattgag atctggaaca tcgtcttcat gcagttcaac cgccaggcag atggcacgat
    62701 ggaaccgctg ccgaagccgt ctgtagatac cggtatgggt ctggagcgta ttgctgcggt
    62761 gctgcaacac gttaactcta actatgacat cgacctgttc cgcacgttga tccaggcggt
    62821 agcgaaagtc actggcgcga ccgatctgag caataaatcg ctgcgcgtaa tcgctgacca
    62881 cattcgttct tgtgcgttcc tgatcgcgga tggcgtaatg ccgtccaatg aaaaccgtgg
    62941 ttatgtactg cgtcgtatca ttcgtcgcgc agtgcgtcac ggcaatatgc tcggcgcgaa
    63001 agaaaccttc ttctacaaac tggttggtcc gctgatcgac gttatgggct ctgcgggtga
    63061 agacctgaaa cgccagcagg cgcaggttga gcaggtgctg aagactgaag aagagcagtt
    63121 tgcccgtact ctggagcgcg gtctggcgtt gctggatgaa gagctggcaa aactttctgg
    63181 tgatacgctg gatggtgaaa cggctttccg tctgtacgac acctatggct tcccggttga
    63241 cctgacggct gatgtttgtc gtgagcgcaa catcaaagtt gacgaagctg gttttgaagc
    63301 agcaatggaa gagcagcgtc gtcgcgcgcg cgaagccagc ggctttggtg ccgattacaa
    63361 cgcaatgatc cgtgttgata gtgcatctga atttaaaggc tatgaccatc tggaactgaa
    63421 cggcaaagtg accgcgctgt ttgttgatgg taaagcggtt gatgccatca atgcaggcca
    63481 ggaagctgtg gtcgtgctag atcaaacacc attctatgcg gaatccggcg gtcaggttgg
    63541 tgataaaggc gaactgaaag acgctaactt ctccttcgcg gtggaagata cgcagaaata
    63601 cggccaggcg attggtcaca tcggtaaact tgctgcgggt tctctgaaag tgggcgacgc
    63661 tgtgcaggct gatgttgatg aggctcgtcg cgcccgtatt cgtctgaatc actccgcaac
    63721 gcacctgatg cacgctgcgc tgcgccaggt tctggggact catgtatcgc agaaaggttc
    63781 actggttaac gacaaggtgc tgcgcttcga cttctcacac aacgaagcga tgaaaccgga
    63841 agagattcgt gcggtcgaag acctggtgaa cgcacagatt cgtcgcaatt tgccgatcga
    63901 aaccaacatc atggatctcg aagcggcgaa agcgaaaggt gcgatggcgc tgttcggcga
    63961 gaagtatgat gagcgtgtac gcgtgctgag catgggcgat ttctccaccg agctgtgtgg
    64021 cggtactcac gccagccgca ctggtgatat tggtctgttc cgcatcatct ctgaatcggg
    64081 tactgctgca ggcgttcgtc gtatcgaagc ggtaaccgga gaaggcgcta tcaccaccgt
    64141 tcatgcagac agcgatcgct taagcgaagt cgcgcatctg ctgaaaggcg atagcaataa
    64201 tctggcggat aaagtgcgct cagtactgga acgtacgcgt cagttagaaa aagaactaca
    64261 acagcttaaa gaacaagctg ccgcacagga gagcgcaaat ctttccagta aggcaattga
    64321 tgttaatggt gttaagctgt tggttagcga gcttagcggt gttgagccga aaatgttgcg
    64381 taccatggtt gacgatttaa aaaatcagct ggggtcgaca attatcgtgc tggcaacggt
    64441 agccgaaggt aaggtttctc tgattgcagg cgtatctaag gacgtcacag atcgtgtgaa
    64501 agcaggggaa ctgattggta tggtcgctca gcaggtgggc ggcaagggtg gtggacgtcc
    64561 tgacatggcg caagccggtg gtacggatgc tgcggcctta cctgcagcgt tagccagtgt
    64621 gaaaggctgg gtcagcgcga aattgcaata atataagcgt caggcaatgc cgtggactcg
    64681 cttcacggca ttcgcattaa cgctatcgac aacgataaag tcaggttgaa gttgtgtata
    64741 tcggctaaac ttaggtttaa cagaatgtaa tgccatgact gcttacatgt aatgtgtttg
    64801 tcattgctta ctttttggcg ttatatgatg gataatgccg ggatacagag agacccgact
    64861 cttttaatct ttcaaggagc aaagaatgct gattctgact cgtcgagttg gtgagaccct
    64921 catgattggg gatgaggtca ccgtgacagt tttaggggtg aagggcaacc aggtacgtat
    64981 tggcgtaaat gccccgaagg aagtttctgt tcaccgtgaa gagatctacc agcgtatcca
    65041 ggctgaaaaa tcccagcagt ccagttacta atctttccgc gtctcatctt tatcggtgag
    65101 acgcaccctc aaaatttctc cttcactcta tagtcttttc gctttactcc cgttcattca
    65161 acttaagtct ccattttttt gcattactgc tatctgccag acctccgttt ttctgtagat
    65221 aaaacactct ttttgacgtt tttacagact aattgagcgt gaagtgtgca aacgataaaa
    65281 gtgtgggaaa aattgtttga cttataagtc tcagaaagta atatgtgcgc cacgcagcga
    65341 cgatgagcga taaacaagtt cttcgaagca ctcgtaagag gcgtgtggtg aggtggccga
    65401 gaggctgaag gcgctcccct gctaagggag tatgcggtca aaagctgcat ccggggttcg
    65461 aatccccgcc tcaccgccat ttgcatccgt agctcagctg gatagagtac tcggctacga
    65521 accgagcggt cggaggttcg aatcctcccg gatgcaccat attctacgta ctttcagcga
    65581 tgaaggtatg gaagaggtgg cggtataacc gcaggcacca gggaggataa cgttgcttta
    65641 gcaacggcca gaagggcgag ccgcaaggcg agtaatcctc ccgaatgcac catctcttac
    65701 ttgataccgc tttagtagcg gtatcaaaaa atctgcagta aagtaa
//
LOCUS       DADMJB010000005        64638 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.005, whole genome shotgun sequence.
ACCESSION   DADMJB010000005 DADMJB010000000
VERSION     DADMJB010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 64638)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 64638)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..64638
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.005"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..95
                     /locus_tag="JN078_000300"
     CDS             <1..95
                     /locus_tag="JN078_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HAY9039618.1"
                     /translation="LNAVLDYIDAVAATDTSTAPDVIWPELPEA"
     gene            complement(67..504)
                     /locus_tag="JN078_000301"
     CDS             complement(67..504)
                     /locus_tag="JN078_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001513774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HAY9039619.1"
                     /translation="MFYSPSLNIFVNPALKDDYINANSWPDDALAVSDDVYNEFAINT
                     PPDDKIRVAGKNGLPTWALIPPPSYEELIQQAESERQLLLNQANEYMNSKQWPGKAAI
                     GRLKGEELAQYNLWLDYLDALELIDTSSAPDIEWPTPPAVQAR"
     gene            complement(506..892)
                     /locus_tag="JN078_000302"
     CDS             complement(506..892)
                     /locus_tag="JN078_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001537786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9039620.1"
                     /translation="MPVSHYLCIFLNVGLGELSLAGTASGVIGLNGYVTIPLIISGSR
                     RTLIIQWGQARFGGSGGEDAGYLNDFPFAFPSACYGMIVSHVGHTPSGAGILSASAIT
                     SNQFRGFSSIATAANAVLGRYIAIGV"
     gene            923..1489
                     /locus_tag="JN078_000303"
     CDS             923..1489
                     /locus_tag="JN078_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016529756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HAY9039621.1"
                     /translation="MLIGYVRVSTNDQNTDLQRNALNCAGCERIFEDKISGTKPDRPG
                     LKKLLRTLSAGDTLVVWKLDRLGRSMRHLVTLIEELRQRGVNFRSLTDSIDTSTPMGR
                     FFFHVMGALAEMERELIVERTRAGLAAARAKGRVGGRRPKLTTEQWAQIGRLLEAGES
                     RQRIALIFDVGVSTIYRKFPANESNESP"
     gene            1632..2804
                     /locus_tag="JN078_000304"
     CDS             1632..2804
                     /locus_tag="JN078_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath protein"
                     /protein_id="HAY9039622.1"
                     /translation="MAQDYHHGVRVVEVNEGTRSITTVSTAIVGMVCTGDDADAKMFP
                     LNKPVLITDVLTASGKAGESGTLARSLDAIADQAKPVTVVVRVPQGETEEETTTNIIG
                     AVTAEGKKTGMKALLSAQSQLGVKPRILGVPGHDTKAVATELLSVAQSLRGFAYLSAY
                     GCKTVQEAITYRENFSQREGMLIWPDFTGWDTVLNAEATAYATARALGLRAKIDEQTG
                     WHKSLSNVGVNGVTGISADVFWDLQDPATDAGLLNQNDITTLIRKDGFRFWGSRCLSD
                     DPLFAFENYTRTAQVLMDTMAEAHMWAVDKPLNPSLARDIIEGIRAKMRSLVSQGYLI
                     GGDCWLDESVNDKDTLKAGKLTIDYDYTPVPPLENLMLRQRITDQYLVNFSSQVSA"
     gene            2814..3329
                     /locus_tag="JN078_000305"
     CDS             2814..3329
                     /locus_tag="JN078_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HAY9039623.1"
                     /translation="MALPRKLKHLNLFNDGNNWQGIVESLTLPKFTRKYEKYRGGGMP
                     GAVDVDLGLDDSALDTEFSIGGTELLLFKQMGKATVDGIQLRFTGSIQRDDTGEVQAV
                     ELVVRGRHKEVDSGEWKTGESNTTKVTSTNSYAKLTINGEVLYEVDLINMVEIVDGVD
                     LMEAHRNALGL"
     gene            3384..3686
                     /locus_tag="JN078_000306"
     CDS             3384..3686
                     /locus_tag="JN078_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HAY9039624.1"
                     /translation="MSDKQTEKTIQLDTPIMRGKTEITEIVLRKPQSGALRGTRLQAI
                     MDMDVNAMMTVIPRISSPALTAQEIAEMDPADLTAMSVEVVTFLLKKSVLAGLPTA"
     gene            3701..3820
                     /locus_tag="JN078_000307"
     CDS             3701..3820
                     /locus_tag="JN078_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HAY9039625.1"
                     /translation="MADIATIFHWPPSVTDVMPLTEVLEWRDKAIQRSGASHE"
     gene            3813..6890
                     /locus_tag="JN078_000308"
     CDS             3813..6890
                     /locus_tag="JN078_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001282780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HAY9039626.1"
                     /translation="MSDNNLRLQVILNAVDKLTRPFRSAQASSRELAAAVKKSRDAIK
                     QLDQAGSSLDSFRKLQAENQKLGDRLNYARQRANLLSQELGAMGPPSQRQVVALGRQR
                     LAVQRLEERQKKLQQQTALVRAELYRAGISANDGASATARITRETMRYNRQLSEQEAR
                     LRRVGEQQRKMHAARGAYARRLEVRDRIAGAGATTTAAGLAMGAPVMAAVKSYTSMVD
                     AMKGVAKQVNGLRDDNGNRTARFYEMQGAIKAASEQLPMENGAVDFAALVEGGARMNV
                     ANPDDSWEDQKRDLLAFASTAAKAATAFELPADELSESLGKIAQLYKIPTRNIEQLGD
                     ALNYLDDNAMSKGADIIDVMQRLGGVADRLDYRKAAALGSTFLTLGAAPEVAASAANA
                     MVRELSIATMQSKSFFEGMNLLKLNPEVIEKQMTKDAMGTIQRVLEKVNALPQDKRLS
                     AMTMLFGKEFGDDAAKLANNLPELQRQLKLTAGNDALGSMQKESDINKDSLSAQWLLV
                     KTGAQNTFSSLGETLRQPLMDILYTVKSVTGALRRWVEANPELTGTLMKVAAVVAAVT
                     VGLGTLAVALAAVLGPLAVIRLGFSVLGIKTLPSVTATVTRTSNALSWLAGAPLALLR
                     RGLASSGNAAGLLTAPLSSLRRTASLTGNVLKTVAGAPVALLRSGLSGLRAVAVMFMN
                     PLAVLRGGLAATGTVLRMLASGPLAMLRVALYAVSGLLGALLSLIGLVVTALAGVALV
                     VWKYWQPITAFLGGVVEGFKAAAGPVSAAFEPLKPVFQWIGDKVQALWGWFTDLLTPV
                     KSTSAELQSAAAMGRRFGEALAEGLNMVMHPLDSLKSGVSWLLEKLGIVSKEAAKAKL
                     PESVTRQQPATVNADGKVMMPSGGFPSWGYGFAGMYDSGGYIPRGQFGIVGENGPEIV
                     NGPANVTSRRNTAALAAVVAGMMGVAATPAELPPLHPLALPAKGGEAMVSRAATVPPV
                     QRIEAPMQIIIQTQPGQSAQDIAREVARQLDERERRLKAKARSNYSDQGGYDA"
     gene            6887..7372
                     /locus_tag="JN078_000309"
     CDS             6887..7372
                     /locus_tag="JN078_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9039627.1"
                     /translation="MMMVLGLYVFMLRTVPYQELQYQRSWRHAANSRVNRRPSTQFLG
                     PDNDMLTLSGVLMPEVTGGRLSLLALEQMAEQGKAWPLIEGSGTIYGMYVIEGLNQTK
                     TEFFRDGMPRRIEFTLSLKRVDESLSDMFGDLSAQLNNLQGTATSALSDISKTVGGLL
                     S"
     gene            7369..8469
                     /locus_tag="JN078_000310"
     CDS             7369..8469
                     /locus_tag="JN078_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HAY9039628.1"
                     /translation="MNFSSELLNKGNKTPAFSISIEGRDITTVLDNRLMGLTLTDNRG
                     FEADQLDLELDDADGKIVLPRRGAVITLALGWKGQPLFPKGAFTVDEIEHTGAPDRLT
                     IRARSADFRETLNTRREKSWHKTTVGEVVKEIAARHKLKMALGEDLSDKLVEHIDQTN
                     ESDGSFLMRLARQYGAIASVKNGNLLFIRQGQGKSASGKPLPVITITRKDGDSHRFTL
                     ADRGAYTGVIASWLHTREPAKKESTTVKRKRRTKKQKKEPEAKQGDYLVGTDENVLVL
                     NRTYANRSNAERAAKMQWERLQRGVASFSLQLAEGRADLYTEMPVKVSGFKQPLDDAE
                     WTITTLTHTVSPDNGFTTSLELEVRIDDFEME"
     gene            8562..8780
                     /locus_tag="JN078_000311"
     CDS             8562..8780
                     /locus_tag="JN078_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001504085.1"
                     /note="in E. coli K-12 this is in prophage P2 remnant;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HAY9039629.1"
                     /translation="MMICPLCGSAAHTRSSFQVSSLTKERYNQCQNINCSHTFVTHET
                     FVRSIATPKESNPVQPHPMKSGQVALSL"
     gene            complement(9016..10701)
                     /locus_tag="JN078_000312"
     CDS             complement(9016..10701)
                     /locus_tag="JN078_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate:alanine antiporter"
                     /protein_id="HAY9039630.1"
                     /translation="MNINVAELLNGNYILLLFVVLALGLCLGKLRLGSIQLGNSIGVL
                     VVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGS
                     ALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGMESRQLSLALDNLS
                     LGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAY
                     RVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYP
                     DAHARLDPSFRNGKEVFDRDLLDMRIVTEEVVVKNHNAVGKRLAQLKLTDHGCFLNRV
                     IRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFVI
                     GLMIGMITFQFSTFSFGMGNAAGLLFAGIMLGFMRANHPTFGYIPQGALSMVKEFGLM
                     VFMAGVGLSAGSGINNGLGAIGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRALLFGA
                     MMGARTCAPAMEIISDTAHSNIPALGYAGTYAIANVLLTLAGTIIVMVWPGLG"
     gene            10971..11348
                     /locus_tag="JN078_000313"
     CDS             10971..11348
                     /locus_tag="JN078_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9039631.1"
                     /translation="MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLF
                     FILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFW
                     CALGALCFLFISSLFKPQHRKNQ"
     gene            complement(11378..11635)
                     /gene="grxA"
                     /locus_tag="JN078_000314"
     CDS             complement(11378..11635)
                     /gene="grxA"
                     /locus_tag="JN078_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 1"
                     /protein_id="HAY9039632.1"
                     /translation="MQTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGIT
                     KEDLQQKAGKPVETVPQIFVDQQHIGGYTDFAAWVKENLDA"
     gene            11795..12082
                     /locus_tag="JN078_000315"
     CDS             11795..12082
                     /locus_tag="JN078_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1418 family protein"
                     /protein_id="HAY9039633.1"
                     /translation="MRAIGKLPKGVLILEFIGMMLLAVALLSVSDSLSLPEPFSRPEV
                     QILMIFLGVLLMLPAAVVVILQVAKRLAPQLMNRPPQYSRSEREKDNDANH"
     gene            12066..12788
                     /gene="nfsA"
                     /locus_tag="JN078_000316"
     CDS             12066..12788
                     /gene="nfsA"
                     /locus_tag="JN078_000316"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase NfsA"
                     /protein_id="HAY9039634.1"
                     /translation="MTPTIELICGHRSIRHFTDEPISEAQCEAIINSARATSSSSFLQ
                     CSSIIRITDKALREELVTLTGGQKHVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLL
                     LGVVDTAMMAQNALTAAESLGLGGVYIGGLRNNIEAVTKLLKLPQHVLPLFGLCLGWP
                     ADNPDLKPRLPASILVHENSYQPLDKDALAQYDEQLAEYYLTRGSNNRRDTWSDHIRR
                     TIIKESRPFILDYLHKQGWATR"
     gene            12849..13751
                     /gene="rimK"
                     /locus_tag="JN078_000317"
     CDS             12849..13751
                     /gene="rimK"
                     /locus_tag="JN078_000317"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6--L-glutamate ligase"
                     /protein_id="HAY9039635.1"
                     /translation="MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPA
                     ASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLR
                     SMQLLARQGIDLPVTGIVHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAA
                     ESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSNLHRGG
                     AASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNASPGLEGIEKTTGI
                     DIAGKMIRWIERYATTEYCLKTGG"
     gene            13839..14315
                     /locus_tag="JN078_000318"
     CDS             13839..14315
                     /locus_tag="JN078_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjN domain-containing protein"
                     /protein_id="HAY9039636.1"
                     /translation="MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVF
                     DAKIDLIDNTILFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVC
                     QSLSVMQGVTYEQFAWFVRQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH"
     gene            14666..15778
                     /gene="potF"
                     /locus_tag="JN078_000319"
     CDS             14666..15778
                     /gene="potF"
                     /locus_tag="JN078_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein PotF"
                     /protein_id="HAY9039637.1"
                     /translation="MTALNKKWLSGLVAGALMAVSVGTLAAEQKTLHIYNWSDYIAPD
                     TVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLD
                     KSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSW
                     DLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLR
                     PNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAF
                     FDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPLVSAEVRENPG
                     IYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVKSGK"
     gene            15873..17006
                     /gene="potG"
                     /locus_tag="JN078_000320"
     CDS             15873..17006
                     /gene="potG"
                     /locus_tag="JN078_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000996010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter ATP-binding subunit
                     PotG"
                     /protein_id="HAY9039638.1"
                     /translation="MNDAIPRPQAKTRKALTPLLEIRNLTKSYDGQHAVDDVSLTIYK
                     GEIFALLGASGCGKSTQLRMLAGFEQPSAGQIMLDGVDLSQVPPYLRPINMMFQSYAL
                     FPHMTVEQNIAFGLKQDKLPKAEIASRVHEMLGLVHMQEFAKRKPHQLSGGQRQRVAL
                     ARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAG
                     RIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLKERHEDGLVLYSPGLV
                     HPLKVDADASVVDNVPVHVALRPEKIMLCEEPPANGCNFAVGEVIHIAYLGDLSVYHV
                     RLKSGQMISAQLQNAHRHRKGLPTWGDEVRLCWEVDSCVVLTV"
     gene            17016..17969
                     /gene="potH"
                     /locus_tag="JN078_000321"
     CDS             17016..17969
                     /gene="potH"
                     /locus_tag="JN078_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter permease PotH"
                     /protein_id="HAY9039639.1"
                     /translation="MNTLEPAAQSKPPGGFKLWLSQLQMKHGRKLVIALPYIWLILLF
                     LLPFLIVFKISLAEMARAIPPYTELMEWADGQLSITLNLGNFLQLTDDPLYFDAYLQS
                     LQVAAISTFCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKN
                     NGVLNNFLLWLGVIDQPLTILHTNLAVYIGIVYAYVPFMVLPIYTALIRIDYSLVEAA
                     LDLGARPLKTFFTVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQ
                     EFFNNRDWPVAAAVAIIMLLLLIVPIMWFHKHQQKSVGEHG"
     gene            17966..18811
                     /gene="potI"
                     /locus_tag="JN078_000322"
     CDS             17966..18811
                     /gene="potI"
                     /locus_tag="JN078_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter permease PotI"
                     /protein_id="HAY9039640.1"
                     /translation="MNNLPVVRSPWRIVILLLGFTFLYAPMLMLVIYSFNSSKLVTVW
                     AGWSTRWYGELLRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVLVRFGRFRGSNGF
                     AFMITAPLVMPDVITGLSLLLLFVALAHAIGWPADRGMLTIWLAHVTFCTAYVAVVIS
                     SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFV
                     SGPGATTLPMLVFSSVRMGVNPEINALATLILGAVGIVGFIAWYLMARAEKQRIRDIQ
                     RARHG"
     gene            18871..19359
                     /locus_tag="JN078_000323"
     CDS             18871..19359
                     /locus_tag="JN078_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjO family protein"
                     /protein_id="HAY9039641.1"
                     /translation="MEDETLGFFKKTSSSHARLNVPALVQVAALAIIMIRGLDVLMIF
                     NTLGVRGIGEFIHRSVQTWSLTLVFLSSLVLVFIEIWCAFSLVKGRRWARWLYLLTQI
                     TAASYLWAASLGYGYPELFSIPGESKREIFHSLMLQKLPDMLILMLLFVPSTSRRFFQ
                     LQ"
     gene            19400..20527
                     /gene="rlmC"
                     /locus_tag="JN078_000324"
     CDS             19400..20527
                     /gene="rlmC"
                     /locus_tag="JN078_000324"
                     /EC_number="2.1.1.189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(747)-C(5))-methyltransferase
                     RlmC"
                     /protein_id="HAY9039642.1"
                     /translation="MQCALYDAGRCRSCQWITQPIPEQLSAKTADLKNLLADFPVEEW
                     CAPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALK
                     PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSETKLAQLRKALPWLQE
                     QLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVA
                     SQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAA
                     ELGLTRLQFQALDSTQFATAQGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSC
                     NAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTLLVKQ"
     gene            complement(20702..21433)
                     /gene="artJ"
                     /locus_tag="JN078_000325"
     CDS             complement(20702..21433)
                     /gene="artJ"
                     /locus_tag="JN078_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY9039643.1"
                     /translation="MKKLVLAALLASFTFGASAAEKINFGVSATYPPFESIGANNEIV
                     GFDIDLAKALCKQMQAECTFTNHAFDSLIPSLKFRKYDAVISGMDITPERSKQVSFTT
                     PYYENSAVVIAKKDTYKTFADLKGKRIGMENGTTHQKYIQDQHPEVKTVSYDSYQNAF
                     IDLKNGRIDGVFGDTAVVNEWLKTNPQLGVATEKVTDPQYFGTGLGIAVRPDNKALLE
                     KLNNALAAIKADGTYQKINDQWFPQ"
     gene            complement(21724..22392)
                     /gene="artM"
                     /locus_tag="JN078_000326"
     CDS             complement(21724..22392)
                     /gene="artM"
                     /locus_tag="JN078_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtM"
                     /protein_id="HAY9039644.1"
                     /translation="MFEYLPELMKGLHTSLTLTVASLIVALILALIFTIILTLKTPVL
                     VWLVRGYITLFTGTPLLVQIFLIYYGPGQFPTLQEYPALWHLLSEPWLCALIALSLNS
                     AAYTTQLFYGAIRAIPEGQWQSCSALGMSKKDTLAILLPYAFKRSLSSYSNEVVLVFK
                     STSLAYTITLMEVMGYSQLLYGRTYDVMVFGAAGIIYLVVNGLLTLMMRLIERKALAF
                     ERRN"
     gene            complement(22392..23108)
                     /gene="artQ"
                     /locus_tag="JN078_000327"
     CDS             complement(22392..23108)
                     /gene="artQ"
                     /locus_tag="JN078_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtQ"
                     /protein_id="HAY9039645.1"
                     /translation="MNEFFPLASAAGMTVGLAVCALIVGLALAMFFAVWESEKWRPVA
                     WAGSALVTILRGLPEILVVLFIYFGSSQLLLTLSDGFTINLGFVQIPVQMDIENFDVS
                     PFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRH
                     ALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIVAAAIYLVITLL
                     SQYILKRIDLRATRFERRPS"
     gene            complement(23115..23846)
                     /gene="artJ"
                     /locus_tag="JN078_000328"
     CDS             complement(23115..23846)
                     /gene="artJ"
                     /locus_tag="JN078_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY9039646.1"
                     /translation="MKKVLIAALIAGFSLSATAAETIRFATEASYPPFESIDANNQIV
                     GFDVDLAQALCKEIDATCTFSNQAFDSLIPSLKFRRVEAVMAGMDITPEREKQVLFTT
                     PYYDNSALFVGQQGKYTSVDQLKGKKVGVQNGTTHQKFIMDKHPEITTVPYDSYQNAK
                     LDLQNGRIDGVFGDTAVVTEWLKDNPKLAAVGDKVTDKDYFGTGLGIAVRQGNTELQQ
                     KLNTALEKVKKDGTYETIYNKWFQK"
     gene            complement(23864..24592)
                     /gene="artP"
                     /locus_tag="JN078_000329"
     CDS             complement(23864..24592)
                     /gene="artP"
                     /locus_tag="JN078_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter ATP-binding protein
                     ArtP"
                     /protein_id="HAY9039647.1"
                     /translation="MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSL
                     LRVLNLLEMPRSGTLNIAGNHFDFTKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQQN
                     LIEAPCRVLGLSKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEP
                     QVLLFDEPTAALDPEITAQIVSIIRELAETNITQVIVTHEVEVARKTASRVVYMENGH
                     IVEQGDASCFTEPQTEAFKNYLSH"
     gene            complement(24810..25325)
                     /locus_tag="JN078_000330"
     CDS             complement(24810..25325)
                     /locus_tag="JN078_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HAY9039648.1"
                     /translation="MRYSKLTMLIPCALLLSACTTVTPAYKDNGTRSGPCVEGGPGNV
                     AQQFYDYRILHRSNDITALRPYLSDKLATLLSDASRDNNHRELLTNDPFSSRTTLPES
                     ARVASASTIPNRDARNIPLRVDLKQGDQSWQDEVLMIQEGQCWVIDDVRYLGGSVHAT
                     AGTLRQSIENR"
     gene            25451..25774
                     /locus_tag="JN078_000331"
     CDS             25451..25774
                     /locus_tag="JN078_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-binding domain-containing protein"
                     /protein_id="HAY9039649.1"
                     /translation="MQFSTTPTLEGQTIVEYCGVVTGEAILGANIFRDFFAGIRDIVG
                     GRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSMLMVSVSGTA
                     VKTRR"
     gene            25771..26601
                     /locus_tag="JN078_000332"
     CDS             25771..26601
                     /locus_tag="JN078_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HAY9039650.1"
                     /translation="MRRVFWLVAAALLLAGCAGEKGIVEKEGYQLDTRRQAQAAYPRI
                     KVLVIHYTADDFDSSLATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGI
                     SAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKP
                     ENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASL
                     LELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEALLEKYGQD
                     "
     gene            complement(26598..27608)
                     /locus_tag="JN078_000333"
     CDS             complement(26598..27608)
                     /locus_tag="JN078_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415389.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HAY9039651.1"
                     /translation="MKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMG
                     AEFVPADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAV
                     AWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMFSQANPQ
                     TRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLA
                     SQEACDKLPSGRVYNITNGEHRTLCSIVQKLIDELNIDCRIRSVPYPMLDMIARSMER
                     FRKSAKEPPLTHYGVSKLNFDFTLDITRAQEELGYQPVITLDEGIEKTAAWLRDHGKL
                     PR"
     gene            complement(27707..29137)
                     /locus_tag="JN078_000334"
     CDS             complement(27707..29137)
                     /locus_tag="JN078_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAY9039652.1"
                     /translation="MPQRILVLGASGYIGQHLVRTLSQQGHQILAAARHVDRLAKLQL
                     ANVSCHKVDLSWPDNLPALLQDIDTVYFLVHSMGEGGDFIAQERQVALNVRDALREVP
                     VKQLIFLSSLQAPPHEQSDHLRARQATADILREANVPVTELRAGIIVGAGSAAFEVMR
                     DMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPASEHRIFEAAGPEVLSYQQQ
                     FEHFMAVSGKRRWLIPIPLPTRWISVWFLNVITSVPPTTARALIQGLKHDLLADDTAL
                     RALIPQRLIAFDDAVRSTLKEEEKLVNSSDWGYDAQAFARWRPEYGYFAKQAGFTVKT
                     SASLAALWQVVNQIGGKERYFFGNILWQTRALMDRAIGHKLAKGRPEREYLQTGDAVD
                     SWKVIVVEPEKQLTLLFGMKAPGLGRLCFSLEDKGDYRTIDVRAFWHPHGMPGLFYWL
                     LMIPAHLFIFRGMAKQIARLAEQSTD"
     gene            complement(29148..30149)
                     /gene="ltaE"
                     /locus_tag="JN078_000335"
     CDS             complement(29148..30149)
                     /gene="ltaE"
                     /locus_tag="JN078_000335"
                     /EC_number="4.1.2.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low-specificity L-threonine aldolase"
                     /protein_id="HAY9039653.1"
                     /translation="MIDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAA
                     ELSGKEAAIFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLFEAGGAAVLGSIQPQP
                     IDAAADGTLPLDKVAMKIKPDDIHFARTKLLSLENTHNGKVLPREYLKEAWEFTRERN
                     LALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAI
                     RWRKMAGGGMRQSGILAAAGMYALKNNVARLQEDHDNAAWMAEQLREAGADVMRQDTN
                     MLFVRVGEENAAALGEYMKVRNVLINASPIVRLVTHLDVSREQLAEVAAHWRAFLAR"
     gene            complement(30186..31904)
                     /gene="poxB"
                     /locus_tag="JN078_000336"
     CDS             complement(30186..31904)
                     /gene="poxB"
                     /locus_tag="JN078_000336"
                     /EC_number="1.2.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001532507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone-dependent pyruvate dehydrogenase"
                     /protein_id="HAY9039654.1"
                     /translation="MKQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEW
                     MSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHI
                     PSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLP
                     GDVALKPAPEGATTHWYHAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKE
                     LVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQF
                     PYRAFYPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVEEKADRKFLDK
                     ALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLK
                     MNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMK
                     LPVKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVD
                     EALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELA
                     KTNWLR"
     gene            complement(32037..33005)
                     /gene="hcr"
                     /locus_tag="JN078_000337"
     CDS             complement(32037..33005)
                     /gene="hcr"
                     /locus_tag="JN078_000337"
                     /EC_number="1.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001522746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH oxidoreductase"
                     /protein_id="HAY9039655.1"
                     /translation="MTMPTNQCPWRMQVHHITQETPDVWTISLICHDYYPYRAGQYAL
                     VSVRNSAETLRAYTISSTPGVSEYITLTVRRIDDGVGSQWLTRDVKRGDYLWLSDAMG
                     EFTCDDKAEDKFLLLAAGCGVTPIMSMRRWLAKNRPQADVRVIYNVHTPQDVIFADEW
                     RNYPVTLVAENNVTEGFIAGRLTRELLAGVPDLASRTVMTCGPAPYMDWVEQEVKALG
                     VTRFFKEKFFTPVAKAATSGLKFTKLQPAREFYAPVGTTLLEALESNNVPVVAACRAG
                     VCGCCKTKVVSGEYTVSSTMTLTDAEIAEGYVLACSCHPQGDLVLA"
     gene            complement(33017..34669)
                     /gene="hcp"
                     /locus_tag="JN078_000338"
                     /gene_synonym="priS"
     CDS             complement(33017..34669)
                     /gene="hcp"
                     /locus_tag="JN078_000338"
                     /gene_synonym="priS"
                     /EC_number="1.7.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415394.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxylamine reductase"
                     /protein_id="HAY9039656.1"
                     /translation="MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQG
                     LSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQC
                     LAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLK
                     GAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSIL
                     DAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLP
                     AHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVSAYDDRIWTRS
                     IVGWPGVRHLDGDDFSAVITQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVS
                     REKLRHIFLLGGCDGARGERHYFTDFATIVPDDCLILTLACGKYRFNKLEFGDIEGLP
                     RLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVK
                     NIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA"
     gene            complement(34813..35712)
                     /gene="lysO"
                     /locus_tag="JN078_000339"
     CDS             complement(34813..35712)
                     /gene="lysO"
                     /locus_tag="JN078_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415395.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lysine exporter LysO"
                     /protein_id="HAY9039657.1"
                     /translation="MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFM
                     GISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRI
                     AMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQ
                     IVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFG
                     PVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMV
                     PAAIVHGFILSLLVPILIAFFSA"
     gene            complement(36206..36901)
                     /gene="aqpZ"
                     /locus_tag="JN078_000340"
     CDS             complement(36206..36901)
                     /gene="aqpZ"
                     /locus_tag="JN078_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin Z"
                     /protein_id="HAY9039658.1"
                     /translation="MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFG
                     LTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI
                     ASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATAKFAPAG
                     FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGII
                     GGLIYRTLLEKRD"
     gene            37327..38985
                     /locus_tag="JN078_000341"
     CDS             37327..38985
                     /locus_tag="JN078_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent endonuclease"
                     /protein_id="HAY9039659.1"
                     /translation="MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTL
                     LLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTP
                     CTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLR
                     DARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEH
                     YFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQA
                     KGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVE
                     HVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWV
                     INELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATV
                     RSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAI
                     HRSSKPDLAIEVAIEAGRRGVDSVPTLLKKMFSRVLWLARGRAD"
     gene            complement(38982..39938)
                     /locus_tag="JN078_000342"
     CDS             complement(38982..39938)
                     /locus_tag="JN078_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001322270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF535 domain-containing protein"
                     /protein_id="HAY9039660.1"
                     /translation="MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQ
                     KFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEAL
                     RYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLKLTMMISMDKEGDSTILF
                     RNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVM
                     EAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHY
                     RLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG"
     gene            40089..41204
                     /gene="macA"
                     /locus_tag="JN078_000343"
     CDS             40089..41204
                     /gene="macA"
                     /locus_tag="JN078_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308991.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrolide transporter subunit MacA"
                     /protein_id="HAY9039661.1"
                     /translation="MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPG
                     DLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIK
                     EVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQI
                     GTIDAEIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLA
                     DMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYY
                     ARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETR
                     EREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ"
     gene            41201..43147
                     /gene="macB"
                     /locus_tag="JN078_000344"
     CDS             41201..43147
                     /gene="macB"
                     /locus_tag="JN078_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrolide ABC transporter ATP-binding
                     protein/permease MacB"
                     /protein_id="HAY9039662.1"
                     /translation="MTPLLELKDIRRSYPAGDEQVEVLKGITLDIYAGEMVAIVGASG
                     SGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLT
                     AEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALM
                     NGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHMVIIVTHDPQVAAQAERVIEIRD
                     GEIVRNPPAIEKVNVAGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTM
                     LGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYD
                     DLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQ
                     EQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVL
                     RVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMD
                     GVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARAS
                     DVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTAT
                     GILFGWLPARNAARLDPVDALVRE"
     gene            complement(43220..43444)
                     /gene="cspD"
                     /locus_tag="JN078_000345"
     CDS             complement(43220..43444)
                     /gene="cspD"
                     /locus_tag="JN078_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock-like protein CspD"
                     /protein_id="HAY9039663.1"
                     /translation="MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKA
                     GQSVQFDVHQGPKGNHASVIVPVEVEAAVA"
     gene            43767..44087
                     /gene="clpS"
                     /locus_tag="JN078_000346"
     CDS             43767..44087
                     /gene="clpS"
                     /locus_tag="JN078_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HAY9039664.1"
                     /translation="MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVI
                     DVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCT
                     LEKA"
     gene            44118..46394
                     /gene="clpA"
                     /locus_tag="JN078_000347"
     CDS             44118..46394
                     /gene="clpA"
                     /locus_tag="JN078_000347"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpA"
                     /protein_id="HAY9039665.1"
                     /translation="MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREAL
                     EACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNE
                     VTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSE
                     EQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGV
                     GKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ
                     DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKD
                     RALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR
                     HLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLK
                     NLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL
                     SKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEI
                     EKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDN
                     STDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEV
                     SQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKN
                     ELTYGFQSAQKHKAEAAH"
     gene            complement(46738..46825)
                     /locus_tag="JN078_000348"
     tRNA            complement(46738..46825)
                     /locus_tag="JN078_000348"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(46789..46791),aa:Ser,seq:gga)
     gene            complement(47079..47297)
                     /gene="infA"
                     /locus_tag="JN078_000349"
     CDS             complement(47079..47297)
                     /gene="infA"
                     /locus_tag="JN078_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HAY9039666.1"
                     /translation="MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNY
                     IRILTGDKVTVELTPYDLSKGRIVFRSR"
     gene            complement(47582..48286)
                     /gene="aat"
                     /locus_tag="JN078_000350"
     CDS             complement(47582..48286)
                     /gene="aat"
                     /locus_tag="JN078_000350"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HAY9039667.1"
                     /translation="MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQR
                     GIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGC
                     ASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFS
                     RMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGR
                     LPNNFWVPRCLFSPQE"
     gene            complement(48328..50049)
                     /gene="cydC"
                     /locus_tag="JN078_000351"
     CDS             complement(48328..50049)
                     /gene="cydC"
                     /locus_tag="JN078_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter ATP-binding
                     protein/permease CydC"
                     /protein_id="HAY9039668.1"
                     /translation="MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLS
                     ASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSK
                     LLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMMVTIGLSFLDF
                     TLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGA
                     SDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQP
                     GALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVA
                     DRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDP
                     QQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAESL
                     RRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDAT
                     TESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRY
                     YQFKQGL"
     gene            complement(50050..51816)
                     /gene="cydD"
                     /locus_tag="JN078_000352"
     CDS             complement(50050..51816)
                     /gene="cydD"
                     /locus_tag="JN078_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter
                     permease/ATP-binding protein CydD"
                     /protein_id="HAY9039669.1"
                     /translation="MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWF
                     MARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQV
                     LDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFP
                     SNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIF
                     GRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGEL
                     DFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAH
                     PQCGEVELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSL
                     LNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDA
                     SEHELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLL
                     LDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGR
                     YAELSVAGGPFATLLAHRQEEI"
     gene            complement(51939..52904)
                     /gene="trxB"
                     /locus_tag="JN078_000353"
     CDS             complement(51939..52904)
                     /gene="trxB"
                     /locus_tag="JN078_000353"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HAY9039670.1"
                     /translation="MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL
                     TTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNG
                     EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE
                     EALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGV
                     TGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQ
                     TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK"
     gene            53449..53943
                     /gene="lrp"
                     /locus_tag="JN078_000354"
     CDS             53449..53943
                     /gene="lrp"
                     /locus_tag="JN078_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001591745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-responsive transcriptional regulator
                     Lrp"
                     /protein_id="HAY9039671.1"
                     /translation="MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTP
                     CLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEE
                     IQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLV
                     IKTR"
     gene            54078..58106
                     /locus_tag="JN078_000355"
     CDS             54078..58106
                     /locus_tag="JN078_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HAY9039672.1"
                     /translation="MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSF
                     NPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQS
                     SDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHS
                     SGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYE
                     DDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDEE
                     EIIYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWA
                     APVEPVTQTPPVTSVDVPPSQPTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQ
                     YNEPLQQPVQPQQPYYAPAAEQPVQQPYYAPAAEQPVQQPYYATAPEQPAQQPYYAPA
                     PEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPV
                     VEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSAAAVP
                     PVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKR
                     IRVPTRRELASYGIKLPSQRAAEEKAREARRNQYDSGDQYNDDEIDAMQQDELARQFA
                     QTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDF
                     EFSPMKALLDDGPHEPLFTPIVEPVQQPQQLVAPQQQYQQPQQPVAPQQQYQQPQQPV
                     APQPQYQQPQQQVAPQPQYQQPQQPVAPQQQDTLLHPLLMRNGDSRPLHKPTTPLPSL
                     DLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGV
                     KAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRD
                     NPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDV
                     RFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNL
                     AGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKK
                     VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD
                     QAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSD
                     SESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEA
                     QGIVSEQGHNGNREVLAPPPFD"
     gene            58261..58872
                     /gene="lolA"
                     /locus_tag="JN078_000356"
     CDS             58261..58872
                     /gene="lolA"
                     /locus_tag="JN078_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010354356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HAY9039673.1"
                     /translation="MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQK
                     VTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWL
                     KDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQ
                     FSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK"
     gene            58883..60226
                     /locus_tag="JN078_000357"
     CDS             58883..60226
                     /locus_tag="JN078_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HAY9039674.1"
                     /translation="MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRA
                     IEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNR
                     NAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY
                     LLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMM
                     ADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALY
                     WYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIA
                     QAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYA
                     HDEANAYAAGEVYFPREIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR"
     gene            60317..61609
                     /gene="serS"
                     /locus_tag="JN078_000358"
     CDS             60317..61609
                     /gene="serS"
                     /locus_tag="JN078_000358"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000887397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HAY9039675.1"
                     /translation="MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKT
                     ENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALT
                     IPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGS
                     RFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLF
                     HTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGR
                     DTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMG
                     FGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSG
                     LAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG"
     gene            61848..64292
                     /gene="dmsA"
                     /locus_tag="JN078_000359"
                     /pseudo
     CDS             61848..64292
                     /gene="dmsA"
                     /locus_tag="JN078_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415414.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit A"
     gene            64303..>64638
                     /locus_tag="JN078_000360"
     CDS             64303..>64638
                     /locus_tag="JN078_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213046.1"
                     /note="oxidoreductase, Fe-S subunit; terminal electron
                     transfer protein for the reduction of DMSO; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase subunit B"
                     /protein_id="HAY9039676.1"
                     /translation="MTTQYGFFIDSSRCTGCKTCELACKDYKDLTPEVSFRRIYEYAG
                     GDWQEDNGVWHQNVFAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGC
                     RYCHMACPYG"
BASE COUNT        15887 a        16223 c        17418 g        15110 t
ORIGIN      
        1 gacttaacgc cgtgttggat tacattgacg cggtggcggc aacagatacc agcaccgcgc
       61 cggatgtcat ctggcctgaa ctgccggagg cgtaggccat tcaatatctg gagcactgga
      121 ggtatcaatc agttccagtg cgtccagata atccagccac aaattatatt gcgccagttc
      181 ctcacctttc agacgaccaa tagcggcttt accgggccat tgtttactgt tcatgtattc
      241 gttggcctga ttaagcaata attgcctttc tgattctgcc tgttgaataa gttcttcata
      301 tgatggtgga ggtattagtg cccatgtggg taatccattt tttcctgcaa cacgaatttt
      361 gtcatctggg ggcgtattga ttgcaaattc attataaaca tcatcactga cagccagagc
      421 atcatctggc catgaatttg cattaatgta atcatcctta agcgcaggat tcacaaaaat
      481 gtttaaagat ggactataaa acatattaaa cccctatagc gatataacga cctaatacag
      541 catttgcagc agtcgctatg cttgaaaaac cgcggaactg atttgatgta attgcagaag
      601 ccgacaggat tcctgcgcct gaaggtgtat gccccacatg actaactatc atcccataac
      661 atgctgacgg aaaggcaaaa ggaaaatcat taagatatcc tgcatcttca ccaccagacc
      721 caccaaatct cgcctgcccc cactgaataa tcagtgttct ccgggaacct gaaataatta
      781 acggaatcgt tacataccca ttcaggccaa tgacacccga tgcagtgcca gccagagata
      841 attctcccaa accaacgttt aagaaaatgc agagataatg gctaactggc atcatccccg
      901 gtttttattc aggggattga tcatgcttat tggctatgta cgcgtgtcaa caaatgacca
      961 gaacaccgat ttgcaacgta atgcactgaa ctgcgcggga tgtgagcgga tttttgagga
     1021 taaaatcagt ggcactaagc ccgacagacc ggggcttaaa aaactgctca ggacactatc
     1081 ggcaggagac acgctggttg tctggaagct ggacagactg ggacgcagta tgcggcatct
     1141 tgttacgctg atagaagagt tgcgccagcg tggtgtgaat ttccgaagcc tgactgacag
     1201 tattgatacc agtaccccaa tgggccgttt cttttttcac gtcatggggg ctctggctga
     1261 aatggaacgt gaactgatag ttgaacgtac cagagcaggg ctggctgcag ctcgtgccaa
     1321 aggcagagta ggtggacgcc gtcctaagtt gaccaccgaa cagtgggcac agattggacg
     1381 tttactcgag gccggagaat caagacagcg tattgcactg atttttgatg tgggcgtttc
     1441 taccatttat agaaaatttc cggcgaatga gagcaatgaa tcgccctgag tcagtattat
     1501 tttgattttt cctgtaagcg gacaaatacc gtcattttgt gtgaataacg acacaactgc
     1561 gcttagctgt ttgtcaggca caatcacttc aacatagggc gaagcctaat ccaatcagga
     1621 ggttcgccac tatggctcag gattaccacc acggggtgcg cgttgttgaa gtcaacgaag
     1681 gcacccgatc cattaccacg gtgagcaccg ccatcgtggg tatggtctgc acgggcgatg
     1741 atgccgatgc aaaaatgttt cctcttaata aacctgtgct gatcactgat gtgctgaccg
     1801 ccagcggtaa agcgggtgag tctggcacgc tggcccgttc gctggatgcc atcgctgacc
     1861 aggcaaaacc cgtgaccgtt gttgtgcgtg tgccgcaggg tgaaacggaa gaagaaacca
     1921 caaccaatat cattggcgca gtgaccgccg agggtaaaaa aacaggtatg aaagccctgt
     1981 tatctgccca gtcacagctc ggcgttaaac cgcgcattct cggcgtgcca ggtcacgaca
     2041 cgaaggcggt agctactgag ttgctgagcg tggcgcaaag cctgcgtgga tttgcttacc
     2101 tgtcagcgta tggttgcaag acggtgcagg aagcaatcac ttaccgtgaa aacttcagtc
     2161 agcgtgaagg aatgctgatc tggcccgact ttactggctg ggacacggtg ctgaatgccg
     2221 aagcaacggc ttatgccacc gcccgtgcgc tcggtctgcg cgctaaaatt gatgagcaga
     2281 ccggatggca caaaagcctg tccaacgtgg gcgtgaacgg tgtcaccgga atttctgctg
     2341 atgtgttctg ggatctgcag gacccggcaa ccgatgcagg tctgcttaac cagaacgata
     2401 tcaccacgct tatccgcaaa gacggtttcc gcttctgggg ttcccgctgt ctgagcgatg
     2461 atccgctctt tgccttcgaa aactacaccc gcacggcgca ggtgctgatg gacacgatgg
     2521 cagaagcgca catgtgggcg gtggacaaac cgctgaaccc gtcgctggcc cgcgacatta
     2581 tcgaaggtat ccgcgccaaa atgcgtagcc tggtcagtca gggctatctc attggtggtg
     2641 attgctggct ggacgagtcg gtgaacgata aagacacgct gaaagccggg aaactcacca
     2701 tcgattacga ctacacgcca gtgccgccac ttgaaaacct gatgctgcgt cagcgcatca
     2761 ccgatcagta cctggtgaat ttctccagcc aggtcagcgc gtaaggggac aacatggctt
     2821 taccacgcaa attaaaacac ctgaacctgt ttaacgacgg gaacaactgg caggggatcg
     2881 ttgagtcgct gacgctgccg aaattcaccc gcaaatatga gaagtatcgc ggcggcggta
     2941 tgcccggagc ggtggatgtg gatctgggac tggatgacag tgcactggat acagaatttt
     3001 ccattggtgg tactgaactg ctgctgttta agcagatggg caaagccacg gtggatggca
     3061 tccagctgcg ctttaccggc tctattcagc gtgatgatac cggggaagtg caggccgtgg
     3121 agcttgtggt gcgtggacgt cacaaagaag tagattccgg cgagtggaag acgggcgaaa
     3181 gcaacactac caaagtgacc agtaccaaca gctacgcgaa gctgaccatc aatggtgagg
     3241 tgctctatga agtggacctg atcaacatgg tggaaattgt ggacggtgtg gacctgatgg
     3301 aagcgcaccg caacgccctc ggcctctgat gtatctgaac ggcgcggaat gccgcgccag
     3361 aacctaattt acaggacaac aaaatgagcg ataagcagac tgaaaagacc attcaactgg
     3421 atactcccat catgcgcggt aaaacagaaa ttaccgaaat tgtgttgcgt aaaccgcagt
     3481 ccggtgcgct gcgcggcaca cgcctgcagg ccattatgga tatggatgtg aacgcgatga
     3541 tgaccgtgat cccccgcatc tccagtccgg cactgactgc acaggaaatt gcagagatgg
     3601 acccggcaga tctcactgcc atgtcggttg aggttgtcac ttttttgttg aagaagtcgg
     3661 tgcttgccgg tttaccgaca gcctgacggt tgacgatctg gtggctgata tcgccaccat
     3721 ctttcactgg ccgccatccg ttactgacgt tatgccgctg accgaagtgc tggaatggcg
     3781 ggataaagcg attcagagaa gcggggccag ccatgagtga caataacctg cgtctgcagg
     3841 tgattcttaa tgcggttgac aaactcaccc gcccatttcg atccgcgcag gccagttcaa
     3901 gagaactggc tgctgctgtc aaaaaatccc gcgatgcaat aaagcagctt gatcaggccg
     3961 ggagcagtct ggacagcttc cgaaagctgc aggcagaaaa tcagaaatta ggcgacaggc
     4021 tgaactatgc ccgccagcgt gcaaatttgc tcagtcagga actgggagcg atggggccgc
     4081 cttcgcaacg tcaggttgtt gctctgggcc gtcaacggct ggctgttcag cgcctagaag
     4141 aacgccagaa aaagctgcag cagcagacgg cgcttgtgcg tgcagaactt tatcgtgctg
     4201 gtatttcagc taatgatggc gccagtgcga cggcccgcat tacccgtgaa acgatgcgtt
     4261 ataacaggca gctttctgag caggaagcga ggttacgacg tgtcggggag caacagcgaa
     4321 aaatgcacgc cgcccggggg gcttacgcca ggcgtcttga ggtaagggat cgtattgcag
     4381 gtgccggagc caccaccacg gctgcagggc tggcaatggg cgcaccagtg atggcggcag
     4441 taaaaagcta taccagcatg gtagatgcca tgaaaggtgt ggcaaagcag gtcaatggtc
     4501 tgcgtgacga taatggcaac cgcactgcgc gtttttacga aatgcagggt gccatcaagg
     4561 ctgccagcga acagttgccg atggaaaacg gtgctgtgga cttcgccgca ctggttgaag
     4621 gtggtgcgcg catgaacgtc gcaaaccctg acgacagctg ggaagaccag aaacgtgacc
     4681 tgctggcctt cgccagcacg gcggcaaagg cggcaacagc ctttgaactg ccagcggatg
     4741 aactgtcaga aagtctgggg aaaatcgccc agctctacaa aatccctacc cgcaatattg
     4801 agcagctcgg tgatgcgctg aactatctgg atgataacgc catgtcgaaa ggggcggaca
     4861 tcattgatgt catgcaacgc ctgggcggtg tggctgaccg tctggattat cgtaaagcgg
     4921 cggcgctggg ttccaccttc ctgacactcg gcgctgcgcc tgaggttgca gccagtgcag
     4981 caaacgcgat ggtgcgtgaa ttgtccattg ccaccatgca aagcaagagt ttctttgaag
     5041 ggatgaatct gctgaaactc aatccagaag tgattgaaaa gcagatgacg aaggatgcga
     5101 tgggaactat ccagcgggtg ctggagaagg tgaatgcgct gccacaggat aagcgcctgt
     5161 ctgccatgac catgttgttt ggtaaagagt ttggcgatga cgcagcgaaa ctggcaaaca
     5221 acctgccgga acttcagcgc cagttaaaac tgactgcggg caatgatgcg ctcggttcca
     5281 tgcagaaaga atccgacatc aacaaggatt cactttctgc tcagtggttg ctggtcaaaa
     5341 ccggagcaca gaacaccttc agcagcctgg gggaaacgct gcgccagccg ctgatggata
     5401 ttctgtacac ggtgaaaagc gtcacggggg cgttgcgtcg ctgggtggaa gctaacccgg
     5461 aactgacggg cactctgatg aaagtagccg ctgtggtagc tgccgttacc gtgggcctcg
     5521 gcaccttagc ggtggcgctg gctgcagtgc tggggccgct ggcagtcatc cgtctgggat
     5581 tctctgtgct gggtatcaaa acgttacctt ccgttacggc aacagtaacc cgaaccagca
     5641 acgcgttgtc ctggctggct ggcgcaccac tggcactgct gcgacgcggg cttgcttcat
     5701 cgggcaacgc tgcaggttta cttactgcgc cgttgtcgtc tttgcgccgc acggcatcac
     5761 tgacgggaaa tgtcctgaaa actgtagcag gtgcgccggt tgcacttttg cggtctggat
     5821 tatccggttt acgtgcggtt gctgtgatgt ttatgaatcc actggcggta ctacgcggcg
     5881 gactggctgc cacaggcacg gtgctgcgta tgctcgcatc cggtccactg gcgatgctgc
     5941 gcgttgccct gtatgccgtc tctggtctgt taggtgctct gctcagtctg ataggtcttg
     6001 tggttactgc actggcgggt gtggcgctgg ttgtctggaa atactggcag cccatcaccg
     6061 catttctcgg tggcgtggtg gaaggattca aagcggcggc aggtcctgtc agtgccgcgt
     6121 tcgaaccgct taagcctgtg ttccagtgga ttggcgacaa agtacaggcg ctgtggggct
     6181 ggtttactga tctgctgacg cccgttaagt cgacctctgc cgaactgcag agtgcagcgg
     6241 caatggggcg acgattcggg gaggctctgg cggaagggct gaatatggtc atgcatccgc
     6301 tggactccct gaaatccggc gtttcctggt tgctggagaa acttggcatt gtcagtaaag
     6361 aggccgcaaa ggcgaaactg ccggaaagcg tgacgcgtca gcaacctgcg acggtgaatg
     6421 cagacggtaa agtgatgatg ccatcgggtg gttttccgtc atggggatat ggctttgcgg
     6481 ggatgtatga cagcggcggg tatatcccgc gcgggcagtt tggcatcgtc ggtgaaaacg
     6541 ggccggaaat tgttaacggc ccggcaaatg tgaccagccg gagaaataca gctgcactgg
     6601 ctgccgttgt tgccggaatg atgggtgttg ctgctacgcc agcagagctt ccaccgttgc
     6661 accctttggc acttcccgcg aaaggcggtg aagcgatggt gagtcgtgca gccactgtgc
     6721 cgcccgttca acggattgag gcaccgatgc agatcatcat tcaaacgcag ccaggacaaa
     6781 gtgcgcagga tattgcgcgg gaggtggccc gccagcttga tgaacgtgaa cgcaggctga
     6841 aggcaaaagc caggagtaac tacagcgatc aggggggata cgacgcatga tgatggtgct
     6901 gggattgtac gtgtttatgc tgcgcaccgt gccgtatcag gagctgcagt atcaacgcag
     6961 ctggcgacat gcggcaaaca gccgggtaaa ccgacgcccg tcaacgcagt ttctgggacc
     7021 ggacaacgac atgctgacgc tttctggtgt tcttatgccg gaggtaacgg gcggcaggct
     7081 gtcgttgctg gctctggagc agatggcaga acagggaaaa gcatggcccc tgattgaagg
     7141 cagcggcacg atttacggca tgtatgtgat tgagggactg aatcagacta aaacggagtt
     7201 tttccgcgac ggtatgccgc gccggattga gttcaccctg tcgctaaaac gcgtggatga
     7261 atccctgtcc gatatgttcg gtgatctcag tgcgcaactg aataatctgc agggaacggc
     7321 aacatctgcc ttaagcgata tcagtaaaac ggtgggaggg ctgctgtcgt gaatttcagc
     7381 tctgaactgc ttaacaaagg caacaaaact ccggcattca gcatcagtat tgaaggcagg
     7441 gatatcacca ctgtgctgga caaccgcctg atggggctga cgctgacgga taaccggggc
     7501 tttgaagcgg accagcttga tctggagctg gacgacgccg atggaaaaat cgtgctgccg
     7561 cgccgtgggg ctgtcattac gctggcgctg ggctggaagg gacagccgct tttcccgaaa
     7621 ggggcattca cggtggacga gattgaacac actggcgcac cggatcgcct gactatccgg
     7681 gcgcgaagtg ctgattttcg tgaaacgctg aatacccgcc gtgaaaagtc gtggcacaag
     7741 accaccgttg gggaagtggt gaaggaaata gctgcgcggc acaaactgaa gatggcattg
     7801 ggtgaagact tgtcggataa actcgtggag catatagacc agactaatga gagtgacggc
     7861 agttttttga tgcggctggc gcgccagtac ggtgctattg cgtcggtgaa aaatggcaat
     7921 ctgttattca tccggcaggg gcagggtaaa agcgccagcg gtaaaccact accggtgatc
     7981 actatcacac gcaaggacgg cgacagtcac cgctttaccc tggcagatcg cggagcttac
     8041 acgggcgtca ttgccagctg gttgcatacc cgcgaacccg cgaagaaaga aagcaccacg
     8101 gtgaagcgta agcgcaggac taagaagcag aagaaagagc cggaagcgaa gcagggcgat
     8161 tacctggtgg gtacggatga aaacgtgctg gtacttaatc gcacttatgc caaccggagc
     8221 aacgccgaac gggcagcgaa aatgcagtgg gaacgcctgc aacgcggcgt tgcatcattc
     8281 tcgctacaac tggcggaagg gcgggcagat ctctacacag aaatgcctgt gaaggtcagt
     8341 ggctttaaac agccgctaga tgatgcggaa tggaccatta cgactctgac gcatactgtc
     8401 agcccggata acggttttac gaccagtctg gagcttgaag tgaggattga tgatttcgaa
     8461 atggaatgat tcttcgcaat ggagaacttt taagtttgca aaatggaata atgcggtatc
     8521 attattgtga atttagcaaa aatggggggg gaactcgaaa aatgatgatt tgcccactgt
     8581 gtggaagtgc cgcccatact cgcagcagtt ttcaggtatc ttcattgacc aaagagcgtt
     8641 acaaccagtg ccagaacatt aactgcagcc atacttttgt tacccatgaa acttttgttc
     8701 gttcgattgc aacgccaaaa gagtcaaatc cggttcagcc gcatccaatg aaatcaggac
     8761 aggtggcgct ctctctttga cgctgccgcc attttgtcgc catcgttaaa aaacagtgct
     8821 tctaacatca tgattttaaa aggcataaat ttcagacaac aaaaaaccca tcaaccttga
     8881 accgaaatgg cggggttgat gggctccaca aaatggggac atcaaagaaa agcagtggca
     8941 ctaattaaga ctgatgccct gcggaaaagt tctgcggttg tgcaaaaaaa tttcattttc
     9001 agggcaactt cagttttatc ctaatcctgg ccataccatg acgatgattg tccctgccag
     9061 cgtcagcagg acgttggcga ttgcgtaggt gcccgcatag cccagcgcag ggatgttact
     9121 gtgagctgta tcactgatga tctccattgc cggcgcgcag gtgcgtgcgc ccatcattgc
     9181 gccgaacaac agtgcgcggt tcattcgcaa tacataagca ccgaacaaga aacagataac
     9241 cacgggcaca agactgacaa ttaatccggc aatcaacatc tgaccgccaa tcgcgcccag
     9301 gccgttatta ataccgctac cggcgctcag accaacgcct gccataaaca ccatcaagcc
     9361 gaactctttc accatgctta atgcaccttg cggaatgtaa ccgaaggtcg ggtggttagc
     9421 acgcataaag cccagcataa ttccggcgaa taacaacccg gcagcgttcc ccatgccgaa
     9481 actgaatgtg ctgaactgga aggtgatcat cccgatcatc agcccaataa caaagaaggc
     9541 gcaaaatgcc agcaggtcag tgacctggct gtgaatcgag ataaagccga tgcgatcggc
     9601 gatggttttt acgcgacggg catcaccgct gacttgtaaa acgtcacctt tgttaagcac
     9661 gacgttgtca tctatcggca tctcaatctg gctacgaatg acgcggttaa ggaagcaacc
     9721 gtgatcggtc aacttcagtt gtgcgagacg tttacctaca gcgttatggt ttttaacgac
     9781 cacttcttca gtgacgatac gcatgtcgag aaggtcacga tcgaaaactt ctttaccgtt
     9841 acggaagctg ggatcgagtc gggcatgggc gtcgggatag cctaccaacg ctatttcatc
     9901 gcccatttgt agcacggcat caccgtctgg atttgccaga atcccgttac gtcgaatacg
     9961 ttcaatgtag cagccggttt gtcgataaat acccagttca cgcagatttt tgccgtcggt
    10021 ccaggccacc agctccgggc cgacgcgata ggcgcggatc accggtaaat aaaccttacg
    10081 gttggcatca gtgtccaggc cacgttcgcg ggcgatttgc tgggcgctgg tctgtaagtc
    10141 ctgatgctgc aatttcggca agtaacgcgc accaacaatc aaactcacca gaccgattaa
    10201 ataggttaag gcatacccga ggctcagatt atccagtgcc agtgagagct gcctgctttc
    10261 catgccggaa tgacgcagtg tatcgccagc accgaccaga accggtgtcg acgtcataga
    10321 gcctgctaac ataccggccg tcaggccaat atcccagcca aacagcttac ctaaccctaa
    10381 ggcgatcacc agcgcactgc caaccatcac cagtgctaac attaggtaat ttttcccatc
    10441 gcgaaaaaaa atggaaaaaa agttcggtcc ggcttcgacc ccgacgcaga aaataaacag
    10501 cataaagcca agattaagcg catcggtgtt aatgctgaaa tgttgttggc ctaataacag
    10561 cgatacgact aaaacgccaa tggaattacc cagttggatc gaaccaagtc gtaactttcc
    10621 gagacatagc ccaagcgcga ggaccacaaa taataacaga atgtaattcc catttaacaa
    10681 ttcggcgacg tttatattca cggaggctaa cttcttgttt actagtaagc tgttgaaaga
    10741 aatggtaatt tacgataatg ttttttacca gaattcaggg cgcagattca ttcagcgcac
    10801 ctaaacgata gtaaagtaac aatatatttt actagtgtaa tcacattagg tatcaacggc
    10861 tatatgaatt gcgttggcct atattagcat ggaatgcgaa gcggctttat cttactgaac
    10921 gccacactgg cgaaaaatgt gttcgataga cgcagtgtca ggaggaacga gtgaaacata
    10981 aacaacgttg ggcgggggca atctgctgtt ttgtcctctt cattgtggtg tgcctttttc
    11041 tggcgacgca catgaaaggc gcttttcggg ctgccgggca tcctgaaatc ggcttgctgt
    11101 ttttcattct tcctggagca gttgccagtt tcttttcaca gcgtagagaa gtcctgaaac
    11161 ctctatttgg cgcaatgctg gcggcaccct gttcaatgct cattatgcgg ctgttttttt
    11221 caccgacgcg ctcattctgg caagagctgg catggttact aagcgcggtg ttctggtgtg
    11281 cgctgggggc actgtgtttc ttatttatca gtagtttgtt taaaccacag cacagaaaaa
    11341 atcagtaaag ccctcaacgc gagggcttgt cagacgatca ggcgtccaga ttttctttca
    11401 cccatgcagc aaaatcggta tagccgccga tatgttgctg atcgacaaaa atctgcggca
    11461 cggtttctac gggtttacct gccttttgtt gtagatcttc tttagtgatc ccttccgcac
    11521 gaatatctac atactgatac tgaaaatcat cgcgttcatt gctcaatttc tcagccagat
    11581 cttttgcacg cacacagtaa gggcaacccg aacgaccaaa aataacggtt tgcattattt
    11641 ctctcctcat agatttatgc ctgtaatgat cacgctaaaa tgtattcgct gaaagtaggt
    11701 ttaacctgtt gcattaattg ctaaaagcta taactgttaa acacaataca gtgaaaagtt
    11761 ttagactgaa ggctcacttt gcagagggaa gcgtatgcgc gcgatcggta aattgcctaa
    11821 aggcgtgttg atactggaat ttatcggaat gatgctactg gcggtggcgc tgctgtcggt
    11881 aagcgactcc ctgtcgctgc ctgagccatt ttctcggcca gaagtgcaga ttctgatgat
    11941 ttttctcggt gttttgctca tgcttcccgc tgcggtggtg gttattcttc aggtggcaaa
    12001 acgtcttgcc ccacagctga tgaaccgtcc accgcaatat tcacgttcag aaagagaaaa
    12061 agataatgac gccaaccatt gaacttattt gtggccatcg ctccattcgc catttcactg
    12121 atgaacccat ttccgaagcg cagtgtgagg cgattattaa cagcgcccgt gcgacgtcca
    12181 gttccagttt tttgcagtgt agtagcatta ttcgcattac cgacaaagca ttacgtgaag
    12241 aactggtgac gctgaccggc gggcaaaaac acgtagcgca agcggcggag ttctgggtgt
    12301 tctgtgccga ctttaaccgc catttacaga tctgtccgga tgctcagctc ggcctggcgg
    12361 aacaactgtt gctcggtgtc gttgatacgg caatgatggc gcagaatgca ttaaccgcag
    12421 cggaatcgct gggattgggc ggggtatata tcggcggcct gcgcaataat attgaagcgg
    12481 tgacgaaact gctgaaatta ccgcagcatg ttctgccgct gtttgggctg tgccttggct
    12541 ggcctgcgga taatccggat ctcaagccgc gtttaccggc ctccattttg gtgcatgaaa
    12601 acagctatca accgctggat aaagacgcac tggcgcagta tgacgagcaa ctggcggaat
    12661 attacctcac ccgtggcagc aataatcgcc gggatacctg gagcgatcat atccgccgaa
    12721 caatcattaa agaaagccgc ccatttattc tggattattt gcacaaacag ggttgggcga
    12781 cgcgctaaaa ccgccacgtc gatgtatgat acgcgggctt ttgaccaggt ctgacagaga
    12841 ggtgcagggt gaaaattgcc atattgtccc gggatggaac gctctattcg tgtaagcggc
    12901 tgcgtgaagc cgctatacag cgcggtcacc tggttgaaat tcttgatccg ctttcttgct
    12961 acatgaacat aaatcctgcg gcgtcttcta ttcactacaa aggccgcaag ttaccccatt
    13021 ttgacgcagt gatcccgcgt attggcaccg ccattacctt ttatgggacg gcggcactgc
    13081 gccagttcga gatgctgggg agctatccgc tcaatgagtc ggtcgccatt gcccgggcgc
    13141 gtgacaaatt gcgttccatg caactgctgg cgcgtcaggg catcgacctg cctgtcacgg
    13201 gcattgtgca ttcgccggat gataccagcg atttaatcga catggtcggt ggtgcgccgc
    13261 tggtggtcaa gttggttgaa ggcacgcagg gaattggcgt cgtgctggcg gagacgcgtc
    13321 aggcggcgga aagcgtgatt gacgctttcc gcggtctgaa cgcgcatatt ctggtgcagg
    13381 aatatatcaa agaggcgcaa gggtgcgata tccgctgtct ggttgttggc gatgaagtgg
    13441 tcgctgcgat tgaacggcgg gcgaaagagg gcgattttcg ttccaatttg catcgtggcg
    13501 gcgcggcaag cgtcgccagt atcacaccac aggagcgtga aatcgcgata aaagccgcgc
    13561 gaacgatggc gctggacgtt gctggtgtgg atattctgcg tgctaatcgc gggccgttgg
    13621 tgatggaagt gaatgcgtcg ccggggctgg aaggaataga aaaaaccact ggtatcgaca
    13681 tcgcgggtaa aatgatccgc tggatcgaac gctacgctac gacagaatat tgcctgaaaa
    13741 cgggtggtta gtcgcaatca cattactgat catggttttg cctgcgcttt ttgcgtaagc
    13801 tgtgccggtc tttttatcga aagaggttgt acaaaattat gacatcgctg gtcgttcctg
    13861 gtctggatac gctgcgtcaa tggctcgatg acctggggat gagttttttt gaatgtgata
    13921 actgtcaggc tctgcatctg ccccatatgc agaatttcga cggtgtcttt gatgccaaaa
    13981 tcgatctgat cgataacacg atcctgtttt ctgccatggc ggaagtccga ccttcagccg
    14041 tattgccgct ggcggcggat ttatctgcca tcaatgccag ttcgctgacc gtgaaagcat
    14101 ttcttgatat gcaggatgat aatctgccaa agctggtggt ttgccagtct ttatccgtta
    14161 tgcagggcgt aacctacgag cagtttgcat ggttcgtgcg tcagagcgaa gagcagattt
    14221 cgatggtcat tcttgaagct aatgcccatc aactgctgtt accgactgac gatgaagggc
    14281 aaaacaacgt taccgaaaac tatttcctcc actgataact cctttcgagc acgcagtcgc
    14341 tggtgcagtg actgcgcact gcaaaattat ctgctgtttt taaccttttc ttaaagatta
    14401 tttcacttct cttgtgccga tttggcttta tcacatagag caaatacgca taacaatttg
    14461 ttaaataccg ttttttaatc cgagctatag tctcaaaccc tggctaaagt tattcttgcg
    14521 atgcttttat atagcgagca gtgctggccg ggagagagtt atcttttctt acaccgcgcc
    14581 gataaaaaat atgcacgttt attgcatatc ttttagtatg acaacttttg ttcgtttgtt
    14641 aacgaacttt cagaaggaaa gagatatgac cgccttaaat aaaaaatggc tttcgggtct
    14701 ggttgcgggt gctctgatgg ccgtctctgt cggcacgctc gcggctgaac aaaaaacact
    14761 ccacatttat aactggtctg attatatcgc ccctgacacg gtggccaatt ttgaaaaaga
    14821 aaccggtatt aaagtcgtct acgatgtttt cgactctaac gaagtactgg aaggcaaatt
    14881 aatggcgggt agcaccggct ttgacttggt ggttccatct gccagctttc ttgaacgcca
    14941 gttgactgcg ggagttttcc agccgctgga caaaagcaaa ttgccggagt ggaagaatct
    15001 cgacccggag ctgctgaagc tggtcgccaa acacgatccc gacaataaat ttgctatgcc
    15061 ctatatgtgg gcgacgaccg ggattggcta taacgttgat aaagttaaag ctgtgctggg
    15121 cgaaaacgcg cccgtcgata gctgggactt gatcctcaaa cctgaaaatc tggaaaaact
    15181 gaaaagctgc ggtgtctctt tcctggatgc gccagaagaa gtttttgcta ccgtgttgaa
    15241 ttatctcggc aaagatccca acagcactaa agcggatgat tacaccggac cggcaaccga
    15301 tctgctgtta aagctgcgcc cgaacattcg ttatttccat tcatctcaat acattaacga
    15361 cctggcaaac ggcgatattt gcgtcgctat cggctgggca ggtgatgtct ggcaggcgtc
    15421 aaaccgcgcg aaggaagcga agaatggagt gaatgtctcg ttctcgattc caaaagaagg
    15481 ggcgatggcg ttctttgatg tattcgccat gcctgcggat gccaaaaaca aagacgaagc
    15541 ctatcagttc ctgaattacc tgctgcgccc ggatgtagta gcgcatattt ccgaccatgt
    15601 gttctatgcc aacgccaata aagcagccac gccgctggtg agtgcggaag tccgtgagaa
    15661 cccgggtatt tatcctccgg cggacgttcg tgcgaagcta ttcactctga aagtacagga
    15721 tccgaaaatc gaccgtgtgc gcacccgcgc gtggaccaaa gtgaagagcg gaaaataatc
    15781 cgcagcctta gatgccgggc gggcgcacca cacccgccgg caattcgcac catcatggtg
    15841 cgcttgcaca cattcaatgc cggagagcag ccgtgaatga cgctatccct cgcccgcagg
    15901 cgaaaacccg taaggcgctg acgccgctat tagaaatccg caacctcacc aaatcctacg
    15961 atggtcagca tgcggtcgat gatgtcagcc tgaccatcta caaaggtgaa atcttcgcgc
    16021 tgctgggcgc ttccggctgt ggcaagtcca cgcagctgcg tatgctggca ggttttgaac
    16081 aaccttctgc cgggcagata atgctcgatg gcgtcgattt gtcacaggtg ccgccttacc
    16141 tgcgccccat caatatgatg tttcagtctt acgcgctgtt tccgcatatg accgtggaac
    16201 agaacatcgc ttttggcctg aaacaggaca aactaccgaa agcggaaatt gccagtcggg
    16261 tccatgagat gctcggcctg gtgcacatgc aggagttcgc caaacgcaaa ccgcatcagc
    16321 tttccggtgg tcagcgacag cgtgtggcgc tggcccgaag ccttgccaag cgcccgaaac
    16381 tattactgct cgacgagccg atgggcgcgc tggataaaaa gctgcgtgac cggatgcagc
    16441 ttgaagtggt ggatattctg gagcgtgtcg gcgtgacctg tgtgatggtc actcacgatc
    16501 aggaagaggc gatgacgatg gcgggacgta tcgccattat gaatcgcggg aaatttgtcc
    16561 agattggcga gccagaagag atctacgaac atccaaccac ccgctacagt gctgaattta
    16621 tcggttcggt taatgtcttt gaaggtgtac tcaaagagcg tcatgaggat gggcttgtgc
    16681 tttattcgcc tgggctggtg catccactga aagtcgacgc ggatgcctcg gtggtcgata
    16741 acgtgccggt acatgtggcg ctgcgcccgg aaaaaatcat gctttgcgaa gagccgcccg
    16801 ccaatggttg taacttcgcg gtgggggagg tgatacacat tgcctatctc ggcgatcttt
    16861 cggtgtatca cgttcgtctg aaaagtgggc agatgattag cgcccagcta caaaacgccc
    16921 atcgtcatcg taaagggtta ccgacctggg gcgacgaagt gcgtttgtgc tgggaagtgg
    16981 acagctgtgt ggtgctgacg gtttaaggag caaagatgaa tacacttgaa cctgctgccc
    17041 agtcgaaacc gccgggcgga tttaagctgt ggttgtcgca gctgcaaatg aagcatgggc
    17101 gcaaactggt cattgcgttg ccatatatct ggttgatctt gctgtttctg ctgccatttc
    17161 tgattgtctt taaaataagc ctggcggaga tggcgcgcgc tattccacct tataccgaac
    17221 tgatggagtg ggctgacggg caactgtcca tcactcttaa tctcggtaat tttctgcaac
    17281 tgaccgacga tccgctctat ttcgatgctt atctccagtc gctacaggtg gctgcgattt
    17341 cgacattttg ctgtttactg atcggctatc cgctggcgtg ggcggtggcg cacagtaagc
    17401 cttcgacccg taatatttta ttactactgg tgatcctgcc gtcgtggacc tcgtttctga
    17461 tccgcgttta tgcctggatg ggaatattaa aaaacaacgg tgtgctgaat aattttctgc
    17521 tgtggctggg ggttatcgat caaccgctga ccattcttca taccaatctg gcagtttata
    17581 ttggcattgt ttacgcctac gtgccgttta tggtgctgcc gatttatacc gcgttgattc
    17641 gtattgatta ttcgctagtg gaagcagcgc tggatctcgg tgcacgaccg ctgaaaacgt
    17701 tctttactgt gatcgtgccg ctgactaaag gtgggattat tgccggatcg atgctggtgt
    17761 ttatcccggc tgtgggcgag tttgtgatcc cggaactgct cggtggcccg gacagcatca
    17821 tgatcgggcg cgtgctatgg caagagtttt tcaataaccg cgactggccg gtggccgcgg
    17881 cggtagcgat catcatgttg ctgctgctaa ttgtgccgat aatgtggttc cacaaacacc
    17941 agcaaaaaag cgtgggagaa cacggatgaa taatttaccg gtagttcgtt cgccctggcg
    18001 gattgtgatt ttgctgctgg gctttacctt tctctacgcg ccaatgctga tgctggttat
    18061 ctattcgttt aacagctcga agctggtgac ggtgtgggcc ggctggtcaa cgcgctggta
    18121 tggtgagtta ttgcgcgatg acgcgatgat gagtgcggtt ggtttaagcc tgacaattgc
    18181 tgcctgtgcg gcaacggcgg cggcgatcct cgggactatt gcggcggtgg tgctggtgcg
    18241 ctttggcagg tttcgcggat caaatggctt tgcctttatg atcacagcgc cgctggtaat
    18301 gccagatgtc atcacgggct tgtcgctgtt gttattattc gtcgcgcttg ctcatgccat
    18361 tggctggcct gcggaccgcg gtatgcttac catctggctg gcgcatgtca ctttctgtac
    18421 ggcttatgtg gcggtcgtta tttcgtcgcg tctgcgggaa ctggatcgct cgatagaaga
    18481 agcagcgatg gatctcggtg cgacgccgct gaaagtgttt ttcgtcatta cgctaccgat
    18541 gatcatgcct gcgatcattt ctggctggtt actggctttt actttgtcgc ttgatgatct
    18601 ggtgatcgcc agctttgttt ccgggccggg agccaccacg ttaccgatgc tggtcttttc
    18661 cagcgtgcgg atgggggtga atccggaaat caacgccctt gcaacgttaa ttctcggtgc
    18721 ggtcggaatt gtcggattta tcgcctggta tctgatggct cgcgcagaaa aacagcggat
    18781 acgcgatatc cagcgtgcaa gacatggctg aagacactaa aatttgccaa cctggctaca
    18841 taatgccgcg catgccgcgg cattgttttc atggaagacg aaacgttggg attttttaag
    18901 aaaacatctt catctcatgc tcgcctgaat gtgcctgcgc tggtgcaggt agcggcgctc
    18961 gccattatta tgatccgtgg cctcgacgtg ctgatgattt tcaatacgct gggcgtgcgc
    19021 ggtattggcg agttcattca tcgcagcgta caaacctgga gcttaacgct ggtattttta
    19081 agcagtctgg tgctggtttt tatcgagatc tggtgtgcgt tttcactggt gaaagggcgt
    19141 cgctgggcgc gctggctata tctgctgaca caaatcaccg ccgcaagtta cttgtgggcg
    19201 gcttcgctgg ggtatggtta tccggagctg ttcagcattc ccggtgaatc aaaacgtgaa
    19261 atcttccata gcctgatgct gcagaagctg ccggatatgc tcatcctgat gctgctgttc
    19321 gttccctcga ccagtcggcg gttcttccag ttgcaataat gtgtataatc gtcgcccctg
    19381 atgatgtgaa ggtcaatgta tgcagtgcgc actttacgac gcgggtcgct gtcgttcctg
    19441 tcagtggata acgcagccga ttccagagca actctccgct aaaaccgccg atcttaaaaa
    19501 tctgctcgcc gattttccgg ttgaggaatg gtgcgcgccg gtgtcaggcc cggaacaagg
    19561 gtttcgtaat aaagccaaaa tggtggtgag tggtagcgtt gaaaaaccac tgctcggtat
    19621 gctgcatcgc gatggcacgc cggaagacct ttgtgactgc ccgctttatc ctgcctcttt
    19681 tgcgcccgtt tttgcggcgc taaaaccgtt tatcgcccgt gcggggttaa cgccctacaa
    19741 cgtggcgcgt aagcgtggcg aactgaaata cattctgctg actgaaagcc agagcgatgg
    19801 cggcatgatg ctgcgctttg tactgcgttc tgaaaccaaa ctggcacaac tgcgtaaggc
    19861 gctgccgtgg ttacaggaac aactaccgca actgaaagtt attaccgtca atattcagcc
    19921 ggtacatatg gcgattatgg aaggggagac ggagatctac ctgactgaac aacaggcgct
    19981 ggcagagcgt tttaatgacg taccgctgtg gatccgtccg caaagtttct tccagactaa
    20041 tccggcggtc gccagccagc tgtacgctac cgcgcgcgac tgggtacggc agctgccagt
    20101 taaacatatg tgggatctgt tctgcggtgt ggggggcttt ggtttacact gcgcgacgcc
    20161 tgacatgcag ttaaccggga tcgaaattgc gccagaggcc attgcctgtg caaagcagtc
    20221 agccgctgaa ctgggcttaa ctcgtttaca atttcaggcg ctggactcca ctcagtttgc
    20281 cactgctcag ggggaggtgc cggagctggt gctggttaac ccgccgcgcc gcggcattgg
    20341 taaaccgctg tgtgattatc tctcaacgat ggcaccgcgt tttatcatct actccagctg
    20401 taacgcccaa actatggcga aagatatccg cgaactgcct gggtttcgca tcgaacgggt
    20461 acagcttttt gatatgttcc cgcacaccgc gcactatgaa gtgctgacgc tgctggtgaa
    20521 gcaataaaaa agccgcaggt gcggcttcag attgctgatc aggtgcgctt tgttcatgcc
    20581 ggatgcggcg tgtacgcctt atccggccta caaaatcatg ctaaatcaat acattgcaga
    20641 gttgatgtgg gccagataag cgcagcgcat caggcaatct tacttttgtc atcagtctca
    20701 attactgcgg gaaccactgg tcattgattt tctgatatgt accgtcagct ttaattgctg
    20761 ccagcgcgtt attcagtttt tccagcagag ctttgttatc cggacgtaca gcgatgccca
    20821 gaccggtgcc gaagtattgc ggatcggtca ctttttcagt agcaacgccc agttgcggat
    20881 tggttttcag ccattcgttt accaccgctg tgtcaccaaa taccccatca atacgaccat
    20941 ttttcagatc gataaaggca ttctgataac tgtcatagga gacagttttc acttcggggt
    21001 gctgatcctg aatatatttc tggtgcgtgg tgccgttttc catcccaata cgtttgcctt
    21061 tcagatcggc aaacgttttg taggtatctt ttttggcaat cacgacggct gagttttcat
    21121 agtagggcgt ggtaaacgat acctgcttgc tacgctcggg cgtgatatcc ataccggaga
    21181 ttacggcgtc atattttctg aatttcagtg acgggatcag gctgtcgaac gcgtgattag
    21241 taaaagtaca ttctgcctgc atttgtttgc acaaggcttt tgccagatcg atatcaaagc
    21301 cgacaatctc attattagca cctatagatt caaagggtgg ataggtggct gaaacgccaa
    21361 aattgatttt ctctgcggca gaagcaccga aagtaaagga agcaagtaaa gcggcaagaa
    21421 ctaacttttt catgatggaa ctcccgtctg tcaatcttat gatttttggc cgtgtctgcg
    21481 gcatgggata acaatgccat caagtgaatt tatatgcaat aaatatgatt aaataattta
    21541 aatgaaataa aaaacgacgg ataacttagt gagttgtccg tcttcattat aagaatttat
    21601 gcactatgta ggccggataa ggcgtccacg ccgcatccgg cacaggcacc gtgctgatgt
    21661 ctgatgcgac gctggcgcgt cttatcagac ctacaaaccc cccggcgaat gtacgcagct
    21721 acattaattc cgccgttcga atgccagtgc tttgcgctcg atcagacgca tcatcagcgt
    21781 cagcaggccg ttgacgacca ggtaaataat ccctgccgca ccgaacacca ttacatcgta
    21841 ggtgcgtccg tacaacaact ggctgtatcc catcacttcc atcagcgtaa tggtgtaagc
    21901 cagagaggta cttttgaaca ccagcaccac ttcgttggaa taagaagaga gcgagcgttt
    21961 aaaggcatac ggcagcagga tcgccagcgt atcttttttg ctcattccca gggcgctaca
    22021 ggactgccac tgaccttctg ggatcgcacg aattgcaccg taaaacagct gcgtggtata
    22081 cgccgcactg ttcagcgata acgcaatcag cgcacataac cacggttctg acaacaaatg
    22141 ccacagtgcc ggatactcct gcaaagtcgg aaactggccc ggcccgtaat aaatcaggaa
    22201 gatctgcacc agcagcggcg taccggtaaa cagcgtgata taaccccgca ccagccacac
    22261 cagcaccggc gttttcagcg tcaggatgat ggtaaaaatc aatgccagaa tcagtgccac
    22321 aatcagcgag gcaacggtta gcgtcaggct ggtgtgtagc cctttcatca gttcgggtaa
    22381 atactcaaac attagctggg cctccgctca aaacgtgtcg cgcgcaggtc aatgcgtttg
    22441 agaatgtact gactgagcag ggtgatcacc aggtaaatcg ccgccgccac aatataccag
    22501 gtaaatggtt cctgggtacg agtagcgatg ctttttgttt gcagcattaa atcattcaca
    22561 ctaatcaaac tgaccagcgc ggtatctttc agcagcacca gccactggtt accgaggcca
    22621 ggcagcgcat gacgccacat ctgcggcatc accagacgga aaaagatagc cgatttcgac
    22681 agccccagcg cctgaccaga ctcccactga cccaccggca ccgctttcaa cgcgccccga
    22741 agcgtttgcg aggcataggc ggcatacagc agtgacagag cgatgacacc acaaaggaac
    22801 gggctaacgt cgaagttctc aatgtccatc tgcactggga tctgcacgaa cccaagattg
    22861 atagtgaagc catccgaaag cgtcagcagc agctgcgagg agccaaaata gataaacagc
    22921 accaccagaa tttctggcag gccacgcaga atggttacca gcgctgaacc tgcccacgcg
    22981 acaggacgcc atttttccga ctcccatacc gcaaagaaca tcgccagcgc cagcccgaca
    23041 atcaatgcac aaacggcaag gccgacggtc atcccggcgg cgcttgctaa aggaaaaaat
    23101 tcattcatca ggaattactt ctggaaccat ttgttgtaga tggtttcgta agtgccatct
    23161 ttcttcactt tttccagcgc agtgttgagt ttctgctgca gctcagtgtt gccctgacgt
    23221 accgcgatgc cgaggccagt gccgaagtaa tctttatcgg tcactttgtc gcccaccgcc
    23281 gccagtttcg ggttatcttt cagccactca gtgaccactg cggtgtcacc gaagacgccg
    23341 tcgatacgcc cgttttgcag atccagtttt gcgttctggt agctgtcata cggaacggta
    23401 gtgatttccg ggtgcttatc cataatgaat ttctggtgtg tcgtcccgtt ctgtacgccg
    23461 acttttttgc ctttcagctg atcaacactg gtgtatttgc cttgctgacc cacaaacagg
    23521 gcagagttgt catagtacgg ggtggtaaac agcacctgct tttcacgctc cggagtgata
    23581 tccatgcccg ccatcacggc ttctacgcga cggaatttca ggcttgggat caggctgtca
    23641 aacgcctggt tagagaaagt gcaggttgca tcaatctctt tacacagcgc ttgtgccagg
    23701 tcgacgtcaa aaccaacgat ctggttgttt gcatcaatcg attcaaacgg aggataggat
    23761 gcttcggtag caaaacgaat ggtttcggca gctgtggcgg aaagactaaa acctgcaatt
    23821 aacgcggcaa tcagaacttt tttcattgtt gttatcccga atcttagtga gagagatagt
    23881 ttttaaatgc ttcggtttgc ggctcggtaa agcagctcgc gtcgccttgt tctacgatat
    23941 gaccattttc catatacacc actcggctgg cggttttacg cgccacttca acttcgtggg
    24001 tgacgatcac ctgggtaata ttcgtttctg ccagctcacg aatgatgctg acgatttgtg
    24061 ccgtaatttc cgggtccagt gcggcggtcg gttcatcgaa cagcagtacc tgcggttcca
    24121 tcatcaacgc acgggcaata gcaacacgct gctgctgacc accagaaaga tgcagcgggt
    24181 aacgatcgct ataaggtttg agacgcagac gttccagcag tttttctgca cgggccagcg
    24241 cctgatcttt actcaacccc agtacacggc agggcgcttc aatcaggttt tgctgcacgg
    24301 tcagatgcgg ccacaggttg tattgctgaa acaccatgcc aacgttacga cgcaaatcgc
    24361 gaatcgcttt gtcagagggg gttttggtga aatcgaaatg gttgcctgca atgttgagcg
    24421 taccggagcg cggcatctca agcagattga gtacacgcag cagcgagctt ttacccgcgc
    24481 cgctggggcc aagtaacacc agcgtttcgc cctgtgggca atccagcgtg atatcgaaca
    24541 gcgcctgatg cgcgccgtag aagcaattaa tgccgtttaa ttgaatactc attgacactc
    24601 gtatactggc agtctgatag ctattgaggt cgaagatagt acctttgaca gaataattat
    24661 gcaatatttc tgctttaaaa gttaaaagca aagcgcatta ttcaataaac atagcacaaa
    24721 ataacggggg cggtggtcgg cgagcataaa tgtcggcatt cctcacgaaa tgccggacaa
    24781 tttacggggt ttattggttg atcaaggcgt tagcgattct cgatggactg acggagcgta
    24841 cccgccgtgg catgaacgct gccgcctaag tagcgtacat cgtcgatcac ccaacactgg
    24901 ccttcctgaa tcattaacac ttcatcctgc cagctctgat caccctgttt tagatccaca
    24961 cgcagaggaa tatttcgcgc atcacgattc gggattgttg aggcactggc aacacgggcg
    25021 ctctctggca aggttgtgcg actggagaat ggatcgttgg tcagtagttc ccgatggtta
    25081 ttatcccggg aggcatcgct aagcagtgtc gccagtttgt cgctcagata agggcgcaag
    25141 gcggtgatgt cgttgctgcg gtgcaaaatg cggtagtcat aaaattgctg ggccacgtta
    25201 cccgggcctc cttcaacgca aggaccactg cgtgtgccgt tatctttata agctggagtg
    25261 actgtggtgc aggcactgag gagcagtgcg caggggataa gcattgtcaa tttgctgtag
    25321 cgcataatga tttccttata agcgatcgct ctgaaagcgt tctacgataa taatgatatc
    25381 ctttcaataa tagcgtatca gtctgataat gcttttgaga tcgaaggctt agcaaacaag
    25441 gagatcgatc atgcaatttt ctacaacccc aactctggaa ggccagacca tcgttgaata
    25501 ttgcggtgtg gtgaccggcg aagcgatttt aggtgccaat attttccgtg atttctttgc
    25561 cggtatccgc gatatcgttg gcggacgttc cggtgcgtat gaaaaagaac tgcgtaaagc
    25621 acgggagatc gcctttgagg aattaggctc ccaggcgcgg gcgctggggg ccgatgccgt
    25681 cgtcggtatt gatatcgact acgaaacggt cgggcaaaac ggcagtatgc tgatggttag
    25741 cgtcagcggt acggcggtga aaacgcgtcg atgagaagag tcttctggct ggtcgctgcc
    25801 gctctgttat tggcagggtg tgcaggcgaa aaaggcattg tcgagaaaga gggatatcag
    25861 cttgataccc gacgccaggc gcaggcggcg tatccgcgca ttaaagtgct ggtgatccac
    25921 tacaccgcag atgattttga tagctcgctg gcgacactga ccgataagca ggtcagctcg
    25981 cattatctgg tccctgcggt accaccgcga tacaacggta aaccgcgcat ctggcaactg
    26041 gtgccggaac aagaactggc ctggcatgcg gggattagcg cctggcgcgg ggcaacgcgc
    26101 cttaacgaca cctctattgg cattgagctg gaaaaccgtg gctggcaaaa atcggccgga
    26161 gtgaaatatt ttgccccgtt tgaaccggca cagattcagg cgcttattcc actggcgaaa
    26221 gatattattg cccgttatca catcaagccg gaaaacgtag tggcacatgc ggatatcgca
    26281 ccgcagcgca aagacgatcc ggggccatta tttccctggc agcaactggc gcagcagggg
    26341 attggtgcct ggccggatgc gcagcgggtt aacttttacc ttgccgggcg cgcgccgcac
    26401 acaccggtag ataccgcgtc attgctggag cttttggcgc gctacggtta tgacgttaaa
    26461 cctgatatga caccgcgcga gcagcggcgc gtgattatgg cattccagat gcatttccgc
    26521 ccgacgttat ataacggcga agcggatgca gaaactcagg cgattgccga agcattgctg
    26581 gagaaatacg ggcaggatta gcgcggcagt tttccgtggt cgcgtagcca ggcggcagtt
    26641 ttctcgatac cttcatccag ggtgatgacc ggctgataac ctaactcttc ctgcgcacgc
    26701 gtaatatcca gcgtaaagtc aaaattcaac ttggagacgc cgtagtgggt cagcggcggc
    26761 tcttttgctg acttgcggaa acgctccatg ctgcgggcga tcatatccag catcgggtag
    26821 gggacggaac gaatacgaca gtcaatattc aactcgtcga tcagcttctg cacgatgctg
    26881 cacagtgtgc gatgctcgcc gttggtgatg ttgtacacac gcccggaagg tagcttatcg
    26941 caggcttcct ggcttgccag ccacattgcg tgcacggcat tttcatagta ggtcatatcg
    27001 accagcgcac tgccgccatg cggtaacaga atactgccgt agtggtgcat catatgcgcc
    27061 agacggggaa taaagacttt atcgtgcggt ccgaacagac tttgtgggcg cagaatagta
    27121 aagcgcgttt gtggattcgc ctgcgaaaac atattgatca cttcttcgct ggctgctttg
    27181 ctgcgggcaa actcgttggc gaagcggtga gggcgaaaat cttctttaat atcgcgatgg
    27241 tggtgataat cgaagtacag ggagggggaa gagatatgaa taaagttacg cacaccccag
    27301 gcgacagccc attcacccag gcggcgagtg gcgcgaacgt tagccagatc gaaagcctgt
    27361 tgtgtccccc agggtgaggt aaagctggag cagtgccaca gcgtatcaat gcccgcgagc
    27421 atcactttag cttgtgatga aaccagctcg gtcagatccg ccggaacaaa ctctgcgccc
    27481 attttttcca gcaatttgcc cattgcctcg ttgcgaccgg tcgctcgcac gctgatgcct
    27541 ttctggcata aaaactctac cgcgtttcga cctaagccgc tggtggcgcc ggtaaccagt
    27601 accttcatat caatccactg ttgttgagaa aataacgtgc gcattcttcc gtgatttccc
    27661 ccatgatgca atgggaaaca tgaaagaata acgcaggttt tgtcgattaa tctgtgcttt
    27721 gttctgccag tctggcgatt tgttttgcca ttccgcgaaa aataaacaga tgcgcgggga
    27781 tcatcaataa ccagtaaaac agccccggca taccgtgcgg atgccagaaa gcgcggacat
    27841 cgatagtacg atagtcgcct ttatcttcca ggctaaaaca cagtcgtccc agccccggcg
    27901 ctttcatgcc aaataacaac gtaagttgtt tttccggttc aacgacaatc actttccagc
    27961 tatctaccgc atcgccagtc tgtaaatatt cgcgctccgg gcggcctttc gccagcttat
    28021 gaccgatcgc gcggtccatc aacgcccgtg tctgccacaa aatattgcca aagaaataac
    28081 gctctttacc gccgatttgg ttcactacct gccataaagc agcaaggctg gcggacgttt
    28141 taacggtaaa ccccgcctgt ttggcaaaat aaccgtactc cggtcgccag cgggcaaagg
    28201 cctgagcgtc gtagccccag tcgctggagt tgaccagttt ttcctcctct ttcaacgtgc
    28261 tacgtactgc gtcatcgaaa gcgatcagcc gttgtgggat gagtgcacgt agcgcggtat
    28321 catccgccag cagatcgtgt ttcagcccct gaatcaacgc cctggcggtg gtgggcggta
    28381 cggaagtaat cacattgaga aaccacaccg aaatccagcg ggtggggagg gggatgggga
    28441 tcaaccagcg gcgcttgccg ctcaccgcca taaaatgttc aaactgttgc tgataactga
    28501 gcacctctgg tccggcggct tcgaagatgc ggtgttcgct ggccggatga tctaacaacg
    28561 ccaccagata gtgcagcaag ttttccagcg cgatgggcgt ggtgcgtgaa cgtacccagc
    28621 gtggcggcgt taacactggc aggttgtaga ccatatcgcg catgacttcg aacgccgctg
    28681 aacctgcgcc aacgataatt ccggctcgaa gttcggtcac aggtacattc gcttcacgaa
    28741 gaatgtccgc cgtagcctga cgagcacgca gatgatccga ctgctcatgt ggcggggcct
    28801 gcaacgaact gagaaagatt aattgcttaa ctggtacttc acgtagcgca tcgcggacgt
    28861 tgagagccac ctggcgctcc tgagcgataa aatcgccgcc ttcgcccatg ctgtgcacca
    28921 gaaaatagac ggtatcgata tcctgcaaca gggccggaag gttatccggc cagctgagat
    28981 cgactttatg gcaactgacg tttgccagtt gcagctttgc aagcctgtcg acatgacgtg
    29041 ccgccgccag gatctgatgc ccttgctggc tgagtgtgcg caccagatgc tgaccaatgt
    29101 agccactggc accgagaact aaaatgcgtt gcggcacgtc tctctcctta acgcgccagg
    29161 aatgcgcgcc agtgggcggc gacttccgcc agttgttcgc gcgagacgtc aagatgcgtc
    29221 accaggcgga caatcggcga ggcgttaatc agcacgtttc tcactttcat gtattcgcct
    29281 aacgcggcag cattttcttc cccgacgcga acaaacagca tattagtgtc ctgacgcatc
    29341 acatccgcgc ctgcttcacg cagttgctcc gccatccagg cggcgttgtc gtgatcttcc
    29401 tgcaaccgtg cgacgttatt tttcagggca tacatcccgg cggcagccag aatcccggac
    29461 tgacgcatcc cgccaccggc cattttccgc cagcggatgg cacgtttaat gtaatcacga
    29521 ttaccgacga gtaatgaacc gacaggcgtc ccaagacctt tcgacaggca aatggtgaac
    29581 gaatcacaat attgcgtgat ctctttcagt tcgcagccgt aagccaccac ggcattaaag
    29641 atgcgcgcac cgtcaacatg cagcgccaga ttgcgctcgc gggtaaattc ccatgcttct
    29701 ttcaggtatt cacgcggcag cactttgccg ttgtgggtgt tttccagact gagtaatttg
    29761 gtgcgggcga aatggatatc gtcgggtttg attttcatcg ccactttatc cagcggtagc
    29821 gtgccgtcgg cagccgcgtc gatgggttgc ggctgaatac tgcccagcac cgctgcgcca
    29881 ccggcttcaa acagatagtt atgcgcggcc tgaccgacaa tatactcttc gccacgttcg
    29941 cagtgactga gcagagcgac caggttggcc tgagtgccgg taggcagaaa aatggcggct
    30001 tctttaccgg aaagctctgc tgcatagtcc tgcagagcat taacggtagg gtcgtctccg
    30061 taaacgtcgt ccccaaccgg ggcggccatc atcgcttcga gcatggcgcg gctcggtcgg
    30121 gtaacggtat cactgcgtaa atcaatcatg gcatgtcctt attatgacgg gaaatgccac
    30181 cctttttacc ttagccagtt cgttttcgcc agttcgatca cttcatcgcc gcgtccgctg
    30241 atgattgcgc gcaacatata caagctaaat cctttggcct gttcgagttt gatctgcggt
    30301 ggaatggcta actcttcttt ggcgaccacc acatccacca gcaccggacc gtcgatggag
    30361 aaggcgcgtt gcagggcttc atcaacttca gacgcttttt ctacacggat acccgtaatg
    30421 ccgcacgctt cggcaatgcg ggcaaagttt gtgtcgtgta gttcggtgcc gtcagtcaaa
    30481 tagccaccag ctttcatctc catcgccaca aagcccagca cgctgttgtt aaagacgaca
    30541 attttcactg gcagtttcat ctgcactact gagaggaaat cgcccatcaa catgctaaaa
    30601 ccgccatcgc cgcacatggc gaccacctga cgttctggct ctgtcgcctg cgcacccagc
    30661 gcctgcggca tggcgttagc catcgaaccg tggttaaacg aacctaacag gcgacgcttg
    30721 ccgttcattt ttagataacg tgccgcccac accgttggcg taccaacgtc acaggtgaaa
    30781 atagcgtcat cggcggcaaa atgactaatt tgctgcgcca gatattgcgg gtgaatggct
    30841 ttctcgctcg gtttagctaa atcgtccagc cctttgcggg cgtcgcggta atcttccagc
    30901 gctttatcca gaaacttgcg atcggctttt tcttccacca atggaagcaa tgcacgcaga
    30961 gtcgacttga tatcgccgac cagtgccata tccaccttgc tgtgagcgcc gatgctggct
    31021 gggttgatat caatctgaat gattttggca tcggtcgggt agaaggcgcg gtagggaaat
    31081 tgcgtgccga gtagcactaa cgtgtcggcg ttcatcatgg tatggaaacc tgacgagaag
    31141 ccgattaacc cggtcattcc aacatcatac ggattatcgt attcgacatg ttctttaccg
    31201 cgcagggcat gaacaatagg cgctttaatt ttcccggcaa actcaactaa ctctttatgc
    31261 gcccccgcgc agccgctgcc acacatcagg gcgatattgc tggaataacg cagcagttgc
    31321 gccagtttgc gtaactcttc ttcttccggc gtcacgactg gttgtggcgc atgataccag
    31381 tgcgtggttg ccccttctgg cgcaggtttt aacgccacgt cgcctggtaa cacgacaacc
    31441 gaaacgccac ggttaagcac cgctttgcgc atggcaatcg ccagtacttg tgggatctgc
    31501 tccgggctgg aaaccagctc gcaatagtga ctacattcgc ggaatagctc ttgtgggtgg
    31561 gtttcctgga aatagccgct gccaatttcg ctggagggaa tatgagcggc aatcgccagt
    31621 accggaacgt gattgcggtg gcaatcaaac aggccgttga ttaagtgcag gttgccgggg
    31681 ccgcacgatc cggcgcagac cgccagttct ccgctaagtt gtgcttcagc gccagcggca
    31741 aaggccgcca cttcttcgtg gcgggtggac atccactcga tggtgcccat gcgattaaga
    31801 ctgtcactaa gaccattcag agagtcgcct gtgactcccc agatgcgttt cacccctgcc
    31861 gattcgagtg ttttggcgat ataagctgca accgtttgtt tcatggttct ccatctcctg
    31921 aatgtgataa cggtaacaag tttagttcat ctgacggagg gggaagggat gggagagaaa
    31981 ggaggcacta acggttaaat agcccgatga aaggaatatc atcgggcata aggcgattat
    32041 gcgagaacca aatccccctg cggatggcag gagcaggcca gtacgtaacc ttcagcgatt
    32101 tcggcgtcgg tcagcgtcat tgtactgctc accgtatatt caccggaaac cacttttgtc
    32161 ttacagcagc cgcaaacacc cgcacggcag gcagcgacaa ccggaacgtt attgctttcc
    32221 agcgcctcca gtagtgtggt gccaaccggg gcgtaaaatt ctcgtgccgg ttgcagtttg
    32281 gtgaatttca gaccgctggt cgccgctttt gctactgggg tgaagaattt ctctttaaag
    32341 aaacgcgtca cgccgagcgc tttcacttcc tgctctaccc aatccatata cggagccggg
    32401 ccgcaggtca tcacggtacg tgaagctaag tcaggtacac ctgccagcag ttctcgagtg
    32461 agacgaccag cgataaagcc ttcggtaacg ttattttctg ccaccagcgt taccggatag
    32521 ttacgccact catcggcgaa aataacatcc tgcggcgtat gcacgttgta gatcacccgc
    32581 acatcggcct gtggacggtt cttcgcaagc cagcgacgca tcgacataat cggcgtgacg
    32641 ccgcagcctg ccgccagcaa caggaattta tcttctgctt tatcgtcgca ggtaaattcc
    32701 cccatcgcgt ccgaaagcca gagataatca ccgcgtttta catcgcgcgt cagccactgg
    32761 gagccgacac cgtcatcaat ccgccgcacg gtcagggtga tatattcact cacgcctggc
    32821 gtggaggaaa tggtgtaagc acgcagcgtt tccgctgagt ttcgcacgct gaccagtgca
    32881 tattgcccgg cgcgatatgg gtagtaatcg tggcaaatca gggaaatcgt ccacacatcc
    32941 ggcgtttctt gcgtaatgtg atgaacctgc atccgccacg ggcattgatt cgttggcatc
    33001 gtcatcgaca aactccttac gcgctcaaca gttgcttcat gtcttcttca acagtggtga
    33061 tagaacgcag gccgaatttc tcgttcagca ccgccagcag gtctggtgtc aggaaaccag
    33121 gtgcagtcgg gccggtgacg atatttttca cgcccagaga aagcagcgtc agcagaatga
    33181 cgatcgcttt ctgttcaaac caggagagca ccagcgacag cggcagatcg ttcacaccac
    33241 agcccagttt ctctgccaga gtgacagcca gaataatcgc tgagtaagca tcgttacatt
    33301 gacctgcatc taccagacgc ggcagacctt cgatatcgcc aaactcaagt ttgttaaagc
    33361 gatatttacc acaggcgagg gtcaggatca ggcagtcatc cggcacgatg gtggcgaaat
    33421 cggtgaagta gtggcgctcg ccgcgtgcgc cgtcacagcc accaagcagg aagatatgac
    33481 gcagtttttc acggctcacc agatcaatca gcgtatcagc agcgccaagc agcgtctggc
    33541 gaccaaaacc cacggtgata aggtgcggaa tttcgctgta cgggaagcct gccatctgtt
    33601 gcgcctgggt gataaccgca gagaaatcat caccgtccag atgacgcacg ccaggccagc
    33661 caacaatgct gcgggtccag atacgatcgt cataagcgct tacggttggg tcgatgatgc
    33721 agttcgaggt catcacgatg gggccaggga aacgagcgaa ctccacttgc tgattctgcc
    33781 agccgctgcc gtagttaccg accagatgct tgaatttacg cagctccggg tagccatgcg
    33841 caggcagcat ttcgccgtgg gtgtagacat taacgcccgt gccttcggtc tgttccagca
    33901 ggttgtagag atctttgaga tcgtgaccgg aaatcagaat gcatttaccc gccgtcgctt
    33961 tgacgttgac ctgggttggc gtcgggtgac cgtatttacc ggtttcgcct gcatccagaa
    34021 tgctcatcac tttgaagttc atctggccga tttccattga acactcaaga agcgcgttca
    34081 tatcggcagg ccaggtcccc agccacgcca tgattttatg gtactgggca taaatatcgt
    34141 tgtcgtattg accgagaaca tgcgcgtgtt ccatataggc cgccgcacct ttcaggccat
    34201 acaggcacag cagacgcagg ccgagaatgt tttcgccaat cgccgcttta tctttgttag
    34261 gggtaaattc tgctgcctga cgttgcagct cgccgagatc atcgctcacc agttgcaggt
    34321 cagccatcgg gttatcgacg cgcgcgttgg catctacagc caggcattgt gctttcagcg
    34381 cctcgcgcaa ggcaatcgct tcacgagcgt agccgacaat acgcggagaa tcgaagttaa
    34441 cgttggtcag ggttgagaaa aaggcacgtg gcgcgaagct gtcaacatcg tggttgatga
    34501 tgccgtattc acgcgctttt accgcccagg cagaaagccc ttgcagcgcc gcgatgagta
    34561 aatcctgaag gtcagaagtt tccgccgttt taccacacat cccctgcgcg tatgagcagc
    34621 cgtttcctgc cggagtacgg atagtttgtt cacattgcac acaaaacatg atcacacctt
    34681 ttaaagttat atttaatata catgtttaag gttaagacgc ttaacgcggg gataaaaggg
    34741 atttttcatg caactttaag ggagattgat ttagcgcaat tttggcggca gggatctacc
    34801 gccagagagg tattacgcag agaaaaaggc gatgaggatc ggcactaaca ggctaagaat
    34861 aaaaccgtga acaattgccg ccgggaccat atccagcccg ccagtacgtt gaagaacggg
    34921 cagggtgaaa tccattgatg tggcaccgca taagcccagt gcagtagagc ggctgcggcg
    34981 aatcagccca gggatcaaca taatagcaat cagttcacgg gccagatcat taaaaaacgc
    35041 cgcgctcccg attaccggac caaaagattc ggtcaataaa ataccggaaa gagaatacca
    35101 gccgaaaccg gaggccattg ccagcgcggt attgatgggg agatcaagaa taaaggcgtt
    35161 aattaaacca ccaattaatg aactgacaac caccaccacg gcgacaatca ttccccggcg
    35221 attaaggaca atctgcttta aggtcatgcc attattgcgc aactgaatac caacgaggaa
    35281 aagtagcaaa attaacgtgt attcactggc ttcggtcgcg tgttgtaaga aagccagtcc
    35341 actcagacca atggcaaaac caatcactac tacgccgcac agttttagcg actccagcgc
    35401 catcgcaata cgcgacggga gtttttcttg ctgatggtgg ttgcgccacg gcaggcctcg
    35461 ctccagccac atcagggcgg caatattaca cagtaaaata acggtaatac tgacggcaga
    35521 ataatgcaga atcgccaaca ggttactggc gaggttatcg agaaacgcca gactgatacc
    35581 cataaaaaag agaataaggt aaaccatcca gcttaatagc tgattaataa cttttaacgc
    35641 agcttgttgg cgaagcggaa tgaggtaacc cacaatcagg ggaaccagaa tgattaacag
    35701 cccagaaaac atgaaaaccc agtccttgca aagatgaagt cgaaatgcgc gatgacacac
    35761 tactgaaagc ggaaggacga gtaaagttgc aattaaaagg aaatgttatg cataaggagc
    35821 agtagagtat tcgttttcat ttaaagatat tcttgcgctt taattacaaa ctgcaccgat
    35881 gttggtggcg tcaaaatcgc cgaggcgttc cctgaaggcc ggggcagccc acatggatgt
    35941 gggctgaggg cgcgttttac agggatgtta cctcgcgccc gacccggtag ccgtaaggga
    36001 taagtcgagg gcaccgcgca gcggcgattt tgttcgccag agcccggggg ggcagggggc
    36061 ggcggcgatt ggccgccccc tgcgcgctcc ttgcgccagt ggcaatatgt ggcttagctc
    36121 atgaaaggag cgcaacaaga tgatgaatca acatataaca acatcttaaa aaaagcctga
    36181 cattacgcca ggccttctgc gttaattaat cacgcttttc cagcagggtc cggtaaatca
    36241 gaccaccgat aatgccgccg acaattggca ccacccagaa gaaccacagt tgttctaatg
    36301 cccagccgcc ctggaagata gcaaccgcgg tgctgcgcgc cgggttaaca gaagtgttag
    36361 tcaccggaat actaattaag tgaatcaggg ttaaggccag accaatagcg atcggcgcaa
    36421 aacctgccgg cgcgaatttg gcggttgcgc cgtggatcac caacaggaaa cctgcactca
    36481 ataccagttc aactaccagc gcggaaagca tggaataacc gcctggtgaa tgctcgccat
    36541 aaccgttaga agcaaaaccg ctggctgccg cgtcaaaacc cgttttacca ctggcaatta
    36601 aatacagcag cgccgctgca acaataccgc cgacaacctg ggcaattacg tagccaacga
    36661 cttcttttgc cggaaaacgt ccgccagccc ataaaccaat agtgaccgcc gggttaaaat
    36721 gaccaccaga aatatgacca acagcaaagg ccatcgtcag aacggtcaga ccgaacgcca
    36781 acgccacgcc ggcaaaacca atgcctaatt ccgggaagcc tgcggccagt acagcactac
    36841 cacagccacc aaaaacaagc cagaaagtac caaaacattc agctgctaat tttctgaaca
    36901 tatccacctc aattaaaaat tgaccctgtg aaaaatatgg tcgttttata gggtcgtcgt
    36961 aaaaaaatga cgacggaaat aatgcgcggc tattttaaaa acgaaggcga gtcattcacc
    37021 agataaataa atccagtaaa tttgatttag ggcaacagcg ggttgcccca tatagtcatt
    37081 tgtctgattg acagtgtagt gcacgcaaaa gatttaatcc tttaggcgta ataaaaaata
    37141 atatatcatg ctaattattt gattttgttg tttttgcaga cttatcagca agagggagta
    37201 taacgcgatt attcgctcat ttttcagaca tttgccatgc ttaaatgtga tgtcatcacg
    37261 tattagcaag gcctttcccg ttatactgcc agcgtaaagg ataagtcaca tatttctgga
    37321 ggggatatga ttcttgagcg cgttgaaatt gtgggttttc gcggtatcaa ccgtttgtcg
    37381 ttgatgctgg aacaaaacaa cgtcctgatt ggggagaacg cgtggggtaa atccagcttg
    37441 ctggacgcct taaccctgct gctatcgcca gaatcagatc tctaccattt tgagcgcgac
    37501 gatttctggt tcccgccggg agatatcaac gggcgagaac atcatctgca tattattttg
    37561 accttccgcg aatcgctgcc aggccgacat cgggttcgcc gttatcggcc gctggaagcg
    37621 tgctggacgc catgcaccga tggctatcac cgtatttttt atcgtctgga aggggagagt
    37681 gcggaagacg gcagcgtgat gacactgcgc agttttctcg ataaagacgg acatccgatt
    37741 gatgtcgagg atattaacga tcaggcacgc catctggtgc gtttaatgcc ggtgctgcgc
    37801 ttgcgtgatg cccgttttat gcgccgtatt cgtaacggca cggtgccaaa tgtccctaat
    37861 gtggaagtca ccgcgcgcca gctcgatttc ctcgcccgtg agttatcctc acatccgcaa
    37921 aatctctctg atgggcagat tcgtcaggga ctttccgcaa tggtacagct gcttgagcat
    37981 tatttctctg agcagggggc cggacaggcg cgatatcgtt taatgcggcg gcgggccagc
    38041 aatgagcaac gaagctggcg ctatctggac atcatcaacc ggatgattga ccgacctgga
    38101 gggcgctcgt atcgggttat tttgctcggc ctgtttgcta ctttattgca ggcaaaaggc
    38161 acattgagac tggataaaga cgcgcgtcca ttgttgctga tcgaagatcc agaaacccgt
    38221 ttacacccca ttatgctttc agttgcctgg catctgttga atcttctgcc attgcagcgc
    38281 attgccacca ccaactcggg tgagttgctt tcgttaacgc cggtagagca tgtttgccga
    38341 ctggtacgtg agtcctcgcg cgttgccgcc tggcgtctgg ggccgagtgg cttgagtacc
    38401 gaagatagcc gacgcatatc ctttcacatt cgttttaacc gtccgtcatc gctgtttgca
    38461 cgctgctggt tgctggtgga aggggaaacg gaaacctggg ttatcaatga actggcgcgt
    38521 cagtgcggac atcattttga tgccgaaggg atcaaggtca ttgagtttgc ccagtccggg
    38581 ctaaagccac tggttaaatt tgcccgccga atggggattg aatggcatgt actggtcgat
    38641 ggcgatgaag cagggaagaa atatgccgct acggtacgca gcctgttgaa taacgatcgg
    38701 gaagccgaac gagaacattt aacggcgtta ccggcgctgg atatggaaca ttttatgtat
    38761 cgccagggat tttccgatgt gttccaccgc gtggcgcaaa tcccggaaaa tgtaccgatg
    38821 aatctacgca aaattatctc gaaagcgatc catcgctctt ccaaacccga tcttgccatt
    38881 gaagtggcaa tagaggcagg acgtcgtggt gtggactccg taccgacgct gctgaaaaaa
    38941 atgttctcac gcgtgctgtg gctggcgcgc ggtcgcgcgg attaaccgcg aaacatcgtg
    39001 gccatttgtg gctgaatagc gtcgagcatc tcatagcgcc gacggtattc agcccgtttt
    39061 ttactggcga tttcggcaat ctcttttcgt gctatctgtg ctggaaggcg gtaatggcgt
    39121 tcagcatcac atacgccgcc aaccgattcc cagaaagcgt tgtaatcagc gtggatcttg
    39181 ccttctttat cgcgataacg caggctgcgg taaatatgcg tttcattgct gacggcaata
    39241 atctgctcta cctgcaaacg ttgggcaaac agacaggccg cttccatcac gaggcgtttg
    39301 ggaaatagcc cgtggcaggc tttcgtcgca ttctggattt cctgatgtgg aatttcccat
    39361 tttgcgcctt gcagtccgcc aataaacatc gttcttttcc cctgatattc acacagggta
    39421 aacgtgatct ctgccagagg aataccttcg ctgttgcgaa acaggattgt gctgtcacct
    39481 tctttatcca ttgagatcat catggtcagc ttaagcgtga actgctcgcc gtttttgcct
    39541 tccagcttcg ccagttgcag cccgggggta ttcaaatata agctgaattc ttccgccgac
    39601 atacatccgc ggagtaacgc ataatggtaa cgtaacgcct ccagcaattg cttacggcta
    39661 agattcgccg caaggtaagg gcgatgcaga cgcacaggca gtcgcggctg gcgcgttaac
    39721 aacacattga gattaggcca gtgggaaagt tcgttcatcc actcaacgct taaacgcggc
    39781 ataatcaacg agcgcagcaa aaatttctgg cgaaaactac ggcgatgcca gaatttaccc
    39841 ggccgacact gtccacgtgc cagactaaga aaaagtgaca ggctgctgag agattcagat
    39901 ggcgtaaagg tccgttcagt tagctgcgac atattcatga aatcattggt tatacatgac
    39961 gtcgatttca ccattgcgta tcttaaccaa acatcaatag tgtgattact aacgtaaatt
    40021 ttagggtttt gttgatattt cgttgaagtt aatgacccgg attggcatat ggagtattca
    40081 gaatatttat gaaaaagcgg aaaaccgtga agaagcgtta cgttattgcg ctggtgatag
    40141 tcatcgccgg actgattacg ttatggagaa ttcttaacgc acccgtgccg acttatcaga
    40201 cactgattgt gcgccccggt gatttacagc aaagcgtgct ggcgaccgga aagctggacg
    40261 cgctgcgtaa ggttgatgtg ggcgcgcagg tcagcggtca gttgaaaact ctgtcggtgg
    40321 cgattggcga taaagtaaaa aaagaccagc ttttaggggt tattgatcct gaacaggctg
    40381 aaaaccagat taaggaggtc gaagcaacgc tgatggagct acgtgcgcag cggcagcagg
    40441 cggaagcgga gctgaaactg gcgcgggtga cgtattcccg tcagcaacgt ctggcacaaa
    40501 cgcaggcggt ttcacagcag gatctcgaca ccgccgcgac ggagatggct gtgaaacagg
    40561 cgcaaattgg caccattgac gcggaaatca agcgcaatca ggcttctctc gatacggcta
    40621 aaaccaatct cgattacact cgcatcgttg ccccgatggc cggggaagtc acgcaaatca
    40681 ccactctgca aggccagacg gtgattgccg cacaacaagc accgaacatt ctgacgctgg
    40741 cagatatgag caccatgctg gtaaaagcgc aggtttctga agcggatgta atccacctga
    40801 agccggggca aaaagcttgg tttacggtgc ttggcgatcc actgacgcgc tacgaggggc
    40861 aaatcaagga tgtactaccg acgccggaaa aggttaacga cgctattttc tattacgccc
    40921 gttttgaagt ccccaacccc aatggtttgc tgcggctgga tatgactgcg caagtgcata
    40981 ttcagctcac cgatgtgaaa aatgtgctga cgatccctct gtcggcgtta ggcgatccgg
    41041 ttggcgataa tcgttataaa gtcaaattgt tgcgtaatgg tgaaacacgc gagcgtgaag
    41101 tgacgattgg cgcacgtaac gataccgatg ttgagattgt caaagggctg gaagcgggcg
    41161 atgaagtggt gattggtgag gccaaaccag gagctgcaca atgacgcctt tgctcgaatt
    41221 aaaggatatt cgtcgcagct atcctgccgg tgatgagcag gttgaggtgc tgaagggcat
    41281 caccctcgat atttatgccg gtgagatggt agcgattgtt ggcgcttcag gttccggtaa
    41341 atcgaccctg atgaatattc tcggctgtct ggataaggcc accagcggca cctatcgcgt
    41401 cgccggtcag gatgttgcca cactggacgc cgatgcgctg gcgcaactgc gccgcgagca
    41461 tttcggcttt attttccagc gttaccattt actttcgcat ttaaccgccg agcagaacgt
    41521 tgaagtaccc gccgtctatg ccggtcttga gcggaaacag cggctgcttc gcgcccagga
    41581 gttactgcaa cgactggggc tggaagaccg tacagagtat tatccggcac agctttcggg
    41641 tggtcagcaa cagcgcgtca gcatcgcgcg ggcattgatg aacggcggtc aggtaattct
    41701 tgccgatgaa ccaaccggcg cactggacag ccattctggc gaagaggtga tggcgatcct
    41761 gcatcagctg cgcgatcgcg ggcatatggt gattatcgtc acccacgatc cgcaggtcgc
    41821 tgctcaggcc gagcgggtga tcgaaattcg cgacggcgaa attgtgcgca atcctcccgc
    41881 cattgaaaaa gtgaatgttg ctggcgggac ggagcctgtt gtcaacacgg tgtctggctg
    41941 gcggcagttt gtcagcggtt ttaacgaggc gctgacgatg gcatggcggg cgctggcagc
    42001 gaataaaatg cgtactttac tgaccatgct ggggattatt atcggtattg cgtcggtggt
    42061 ttccattgtc gtggtgggtg acgccgccaa acaaatggtg ctggcggata ttcgttctat
    42121 tggtacgaat actattgatg tctatcccgg gaaagatttt ggcgatgacg atccgcaata
    42181 tcagcaggcg ctgaagtacg acgacttaat cgccatccaa aaacaaccgt gggtcgcctc
    42241 agccacacct gccgtctcgc aaaacctgcg cctgcgttat aacaatgttg atgttgctgc
    42301 cagtgccaat ggcgtgagcg gcgattattt taatgtctat ggcatgacct tcagtgaagg
    42361 aaacaccttt aatcaggagc agctgaacgg tcgtgcgcag gtcgtggttc tcgacagtaa
    42421 tactcgccgc cagcttttcc cccataaagc agatgtggtt ggcgaggtga ttctggtcgg
    42481 caatatgccc gccagagtca ttggtgtggc ggaagaaaaa cagtcgatgt ttggtagcag
    42541 taaagtgctg cgtgtctggc taccttacag cacgatgtcc gggcgagtta tgggccagtc
    42601 gtggctgaac tccattactg tcagggtaaa agaaggattt gacagcgccg aggcggaaca
    42661 gcaactcacg cgtttacttt cactgcgcca cggaaagaag gatttcttta cctggaacat
    42721 ggacggcgtc ttgaaaactg ttgaaaagac cacacgtact ttacaactgt ttctgacgct
    42781 ggtggcggtg atttcgctgg tggtgggcgg tattggtgta atgaatatta tgctggtgtc
    42841 agtgaccgag cggacgcggg aaattggcat tcgcatggct gtaggtgcgc gagcaagcga
    42901 tgttttgcaa cagttcctga tcgaagccgt actggtttgc ttggtcggtg gcgcgttggg
    42961 aataacgctg tcactgttaa ttgctttcac cttgcagctt ttcttacccg gctgggagat
    43021 tggtttttca ccgttggcac tgctgctggc gtttctctgc tcgacggcca ccgggatttt
    43081 atttggatgg ttacccgcac gaaatgcggc acgactggat ccagtagatg ctctggtacg
    43141 agagtaattt ttgagataaa aatgccagcc gatcgggctg gcattttgcc tttaggatgt
    43201 acacaatgag acagaagagc tatgcgactg ccgcttctac ttcgacgggc acaataacac
    43261 tggcgtgatt gccttttggc ccctggtgga catcaaactg aacggattgt ccagctttta
    43321 gcgttctgta accatccatc tgaatggtgg aataatgagc gaaaatatct tcgccgccgc
    43381 cttcagggca gatgaaacca aaccctttgg cattgttgaa ccacttaaca gtaccctttt
    43441 ccatgcttcg acatccttcg caaatcttat acaagtaaga tggaataaac cggggtcaga
    43501 gagggggctg ttcaaaacct cgccaactct agaaatacaa tttagagaat tagggcgagc
    43561 cgtcaagcgt ttgacagggg ccagggggca ggtatgaatc aaaaatttga agcagttaac
    43621 gctattgaca ggaatgtgac agatgtcgct gatgccaacg atagatgata gttatctatc
    43681 atgtggagta gattggtcag gcaaataagc tcttgtcagc ggcagggcgt tctgccgata
    43741 accgtaaccg aagatgataa ctgacaatgg gtaaaacgaa cgactggctg gactttgatc
    43801 aactggcgga agaaaaagtt cgcgacgcgc taaaaccgcc atctatgtat aaagtgatat
    43861 tagtcaatga tgattacact ccgatggagt ttgttattga cgtgttacaa aaattctttt
    43921 cttatgatgt agaacgtgca acgcaattga tgctcgctgt tcactaccag gggaaggcca
    43981 tttgcggagt ctttaccgcc gaggttgcag aaaccaaagt ggcgatggtg aacaagtacg
    44041 cgagggagaa tgagcatcca ttgctgtgta cgctagaaaa agcctgaatg caggcataaa
    44101 aattggggga ggtgcctatg ctcaatcaag aactggaact cagtttaaat atggctttcg
    44161 ccagagcgcg cgagcaccgt catgagttta tgaccgtcga gcacttgtta ctggcgctgc
    44221 tcagtaaccc atctgcccgg gaggcgctgg aagcgtgttc tgtggatttg gttgcgctcc
    44281 gtcaggaact ggaagccttt attgaacaaa ccacacccgt tctgcctgcc agtgaagagg
    44341 agcgcgacac acagccgacg ctgagttttc agcgtgtact gcaacgtgcg gtcttccatg
    44401 tccagtcctc cggtcgcaat gaggtaaccg gtgcaaacgt tctggtcgct atctttagcg
    44461 aacaggagtc gcaggcggca tatctgttgc gtaaacatga agtcagccgt ctcgatgtgg
    44521 tgaactttat ctctcatggc acgcgtaaag acgagccgac acagtcttct gatcctggca
    44581 gccagccaaa cagcgaagaa caagctggtg gggaggaacg tatggagaat ttcacgacga
    44641 acctgaatca gcttgcgcgc gtgggcggaa tcgacccact gattggtcgt gagaaggagc
    44701 tggagcgtgc tattcaggtt ctctgccgtc gccgtaaaaa caacccgctg ctggtggggg
    44761 aatctggtgt cggtaaaacc gcgattgcgg aaggtcttgc ctggcgaatt gttcagggcg
    44821 atgtgccgga agtgatggct gactgtacga tttactctct cgatatcggt tctctgttag
    44881 cgggcactaa atatcgcggc gactttgaaa aacgttttaa agcgttgctc aagcagctgg
    44941 agcaggacac taacagcatc ctgtttattg atgagatcca caccattatc ggtgcgggtg
    45001 cagcgtctgg tggccaggtc gatgcggcta acctgatcaa accgttgctc tccagcggta
    45061 aaattcgcgt aattggttcg acaacctatc aggagttcag caacattttc gagaaagacc
    45121 gtgctctggc gcgtcgcttc cagaaaattg atattactga accgtcgatc gaagaaactg
    45181 ttcaaatcat caatggcctg aaaccgaagt atgaagcgca ccacgacgtg cgttataccg
    45241 caaaagcggt gcgtgcagcg gtagagctgg cggtgaaata cattaacgat cgtcatctgc
    45301 cggataaagc cattgacgtt atcgacgaag cgggcgctcg cgcacgcctg atgccggtaa
    45361 gcaaacgcaa gaaaaccgtt aatgtggcgg atattgagtc cgtggtggcc cgtattgcgc
    45421 gcattccaga gaagagtgtt tctcagagtg accgcgatac cctgaaaaac ctcggcgatc
    45481 gcctgaaaat gctggtcttc ggtcaggata aagccattga ggcgctgact gaagccatta
    45541 agatggcgcg tgcaggttta ggtcacgaac ataaaccggt tggttcgttc ctgtttgccg
    45601 gccctaccgg ggtcgggaaa acagaggtga cggtacagct ttcgaaagcg ttgggcattg
    45661 agctgctgcg ctttgatatg tccgagtata tggaacgcca taccgtcagc cgtctgattg
    45721 gtgcgcctcc gggatacgtt ggttttgatc agggaggttt gctgactgat gcggtcatca
    45781 agcatccaca tgcggtgctg ttgctggacg aaatcgagaa agcgcatccg gacgtgttca
    45841 atattctgtt gcaggtgatg gacaacggta cgctgaccga taacaacgga cgcaaagcgg
    45901 acttccgtaa cgtggtgctg gtgatgacca ccaacgccgg ggtacgtgaa actgagcgta
    45961 aatccattgg tcttatccac caggataaca gcaccgatgc gatggaagag atcaagaaga
    46021 tctttacacc ggaattccgt aaccgtctcg acaacattat ctggttcgat catctgtcaa
    46081 ctgacgtgat ccatcaggtg gtggataaat tcatcgtcga gttgcaggtt cagctggatc
    46141 agaaaggtgt ttctctggaa gtgagccagg aagcgcgtaa ctggctggcc gagaaaggtt
    46201 acgaccgggc aatgggcgca cgtccgatgg cgcgtgtcat ccaggacaac ctgaaaaaac
    46261 cgctcgccaa cgaactgctg tttggttcgc tggtggacgg cggtcaggtc accgtcgcgc
    46321 tggataaaga gaaaaatgag ctgacttacg gattccagag tgcacaaaag cacaaggcgg
    46381 aagcagcgca ttaatctgat tgttaggtag gttggtcaag tccgtaatct cgaaagaggt
    46441 tacggacttt ttgtttatgg ggtggaggag gttcagaccc tttttttaat gatgatggta
    46501 agttgttgat aattagtgct gcgggaaggt aaggacaaaa aagggtgctg caggagaatg
    46561 ggatggtttt gctttattta caacgggcta aacgtgtagt atttgagttc actgccgtac
    46621 aggcagctta gaaattcaca ggtaacatac tccacccgcc caccatgttc actgccgtac
    46681 agacagataa aatgcgaaaa aaaagctcgc actttcgtac gagctcttct ttaaatatgg
    46741 cggtgagggg gggattcgaa cccccgatac gttgccgtat acacactttc caggcgtgct
    46801 ccttcagcca ctcggacacc tcaccaaatt gttttgctac caaacctcat gggtggcaac
    46861 ggggcgctac tatagggagt tggagtaaaa cggtcaagaa gaattttaat gataattatt
    46921 gtttgctcat actgtaaaca agttgtgcag tatatctaca tcgagacaag ttacggactt
    46981 atacttccaa agtacttcat acatatcaca aaataaaaag gccggttaaa ccgacctttt
    47041 actcgttctt tctcttcgcc catcaggcgg taaaacaatc agcgactacg gaagacaatg
    47101 cggcctttgc tcaggtcgta cggggtcagt tcaacagtca ctttgtcgcc cgtcaggatg
    47161 cggatgtagt ttttgcgcat tttaccggag atgtgtgcag taaccacgtg accgttttct
    47221 aactctacgc ggaacatggt attaggcaac gtttcaagaa cggtaccttg catttcaata
    47281 ttgtcttctt tggccatcta atcctctggg gtatcactac cgtaatttga accggcaaga
    47341 taatgccgaa gttctgtaaa taagtaaaga tttgcgcgct aaatcgcaac aaacaggttc
    47401 ggcacattac tccgaaaaca cacggctaag ccgcaccaaa agcgcaacgt ataagggagc
    47461 ggtgagataa acgatgggcg ttacctgacg cgaaaaattc cttatcggca gcggggtaat
    47521 gagcgtaacc aactctgcga ccgcaattat aacactctgg ggagaaatgt gccgaaaaca
    47581 ttcattcttg tggtgaaaac aagcatcgtg gtacccagaa attattcggc aatcgtccga
    47641 ggcgcatttg attgagataa ttaaggtaat cccggcgggg aatttcgcag gcaccaagcg
    47701 atgctgtgtg atcgttaagg acctggcagt cgataagctt accgccatga ccgataaact
    47761 cctcacagaa taccagaagc gccgttttag acgcattttc catccggctg aacatggact
    47821 cgccacaaaa tagcgttccc tgggccacgc cgtacatacc gccgacaagc tcatcttcac
    47881 gccagacttc aatggagtgg gcatggccga gttcgtgaag gcgatggtag gcttcgacca
    47941 cgccacgcgt gatccaggtt ccttcttcgc gatcgctggc acagccttca atgacctgac
    48001 caaaagcgta attcatcgtg acacgatagg gcgagcgttt atgaaatcgc ttcatactac
    48061 ggctgatatg cagtgattct ggccatagca ccgcgcgggg atcgggcgac caccagagga
    48121 tggggtcgcc tggagaaaac cacggaaaaa taccacgctg gtaagccatt aacaggcgcg
    48181 cagggctaag atcgccccca agtgccagca ggccgttagg ctcacgtaat gcgccttccg
    48241 gggaagggaa ggctattgaa tggcgagaaa gctgaaccag gcgcatgacc gcaaaactcc
    48301 acgcaagtcg gatcgttcaa taatagctta caaaccctgc ttgaactggt aataacgccc
    48361 ctgtctggca agcagctctg cgtgagtacc ttgctcaata atttgcccgt tgtccatcac
    48421 tattatttgt tggaaacgag agagtccgcg aagtcgatgg gtgaccatta acaccgtttt
    48481 ctcacgcatc atttctgcaa gcaattcaag gatctggctt tcggttgtgg catctaagcc
    48541 ttcggtaggt tcatccagca acaccagtgg cgcatcatgt aacagcgcac gggcgatagc
    48601 cagacggcgc agttcaccac cggagagctg gcgtccgcct tcacctaacc aactgttgag
    48661 acctgcatcc tcgagcagct tctccagacc aacgcgacgc aagctctccg ccagagcctc
    48721 atcactactg ccaggcgagg cgagtaacag attatcacgc agcgtggcgc taaacagatg
    48781 cactcgctga ggaacaacgc tgatggtctg tcgtagagcc gcttcattca ggctggctat
    48841 ggggctatcg ttaagcaaaa tctcgccctg ttgcgggtcc caagcgcggg tcagcagttg
    48901 taacagtgtt gatttgccgc atccggttcg cccgagaatc gcaatatgtt ccccggcgtt
    48961 tacctgaaga gaaatccctt taagtgcctg ttgggattgc tccggataag tgaactgaac
    49021 atcccgtaat gtcagcgaaa cgcgatcggc aacacgagtt tgggtatcag ggaaggtgac
    49081 ttccggtttt tgatccgtta aatcagtgat ccgaacggca gaggcaatga cttgccccag
    49141 atgctgaaat gcacccgtta ctggtgccag tgcttcaaac gcggctaacg cgcagaagac
    49201 aaacagggca attaacgcgc cgggttgagc attgccgcca acgccgccag acgccatcca
    49261 cagcatcagg atcaccgcta acgcgccaat gagcagcatt atcgcttgcg acaatgcggt
    49321 cagttcagat tgacggcgtt gcgcttccag ccattgaatt tctgtattct ctagttgcgt
    49381 gcgataacga tcgctggcac caaaaatggt cagctcagct tgcccttgca gccaggccgt
    49441 cagttgttgg cgatactgtc cgcgaagatg agtcagattt tgcccggtgc tttttcccgc
    49501 acgataaaac agcggtggca tcaggaaaag cgtcagtaac ataatgccgc ccagcgtaaa
    49561 ggcgagggtg aaatcaagga aacttaaccc gattgtcacc atcataatca ccacaaaagc
    49621 gcccaccagc ggcgagataa cgcgcaggta aagatgatcg agcgtatcaa catccgccac
    49681 cacgcgattg agcaattcgc cctgacgata gcgcgccagt ccggcagggg agaggggcaa
    49741 caatttgctg aaggtgtaaa tgcgcagatg ctgcaacacg cggaaagtcg cgtcgtgact
    49801 taccagacgt tcaaaataac gcccggcagt acgggtgatt gcggcaccac gcacgcccgc
    49861 agcgggtagc atatagttga agctgtacag tccggcaacc cccgcaaccg ctgaggccga
    49921 gaggaaccag ccggaaagtg tcaacagtcc gatactggcg agcagcgtca caattgccag
    49981 cacaatacca agacttaaca tccatttatg acgtttatac agtgctagat agggtagcaa
    50041 agcgcgcatt taaatctcct cctgacgatg ggccagtaat gtggcgaatg ggccaccagc
    50101 cacacttaat tccgcgtaac gtccttgctc aataatccgg ccatcctgca taacccaaat
    50161 gacatcccag tcagcaagat cttctaactg gtgggtgacc attaacgttg tctggcgcag
    50221 agaggcggca ttcagcgcct ccattacgcg ctgttcactg tgagcatcaa ggctggcagc
    50281 gggttcatcc aacagtaata gcgaacaggg atttagtaac gcacgggcca ccgccacgcg
    50341 ctgcgcctgc cccacggaaa ggcgggcagc ctggtcgcca acaggcgtat caacgccttg
    50401 tggcaggagc ggtagaaact cgctgaccca ggcgttatcc agcgctgctt gtaattcatg
    50461 ttcgctggca tcaggtcgcg ccagtagtac gttatcccgt aatgttgctg ccggtaattg
    50521 tggattttgc ccaacccagg agagatgttt acgccatgat tctggtgata aatcgcgtaa
    50581 ttctatcccg ttgattcgta gcgatccctg atatgagaga aaaccagaaa gcgcgttcaa
    50641 cagtgaactt ttacctgaac cgctgcgacc aaccaacacg gcacgttggc ctgctggcaa
    50701 agtaaagttc agcggtccgg ccagcgtttt accttccggc gacgtgataa acagatcctc
    50761 ggcctcaatg gtcaccggat cggtcgatgc taattccacc tcgccacact gcggatgggc
    50821 gagcggggtt tccataaacg ttttcagact gtcagctgca ccaacagcct gggctttagc
    50881 atgataaaac gtaccgagat cgcgtaatgg ctggaaaaac tctggcgcaa ggatcagggc
    50941 cagaaaaccc gcagccagcg tcacgccagt atcgtagtga ccaaaatcca gctcgccaag
    51001 ataggaaaaa ccaaagtaga ccgccaccag agcaattgac agcgaggtaa aaaattcgag
    51061 aatgccggag gataaaaatg ccagccgtag cacttccatt gtccgttggc ggaaatcttc
    51121 cgaagcagaa cgaatacttt caatttcagc ttcaccacga ccaaaaatac gcaatgtttc
    51181 catgccgcgc aggcgatcga ggaaatgccc acttaagcga gcaagagcga gaaagttacg
    51241 tcggttagca tcggcagccc ccattccaac cagcgccata aacaacggaa ttaacggtgc
    51301 agtgcccagc agaatgagcg ccgcagccca gtttgagggg aagattgcca ccacaatcag
    51361 caacggcacc gacactgcca gcgccatttg cggcaggtag cgtgcatagt aatcatgcat
    51421 atcgtcaatt tgctcgagta ccagcgtcgc ccagctcccc gcaggtttac cctgaatcca
    51481 cgctggccct gcttgttgca gacggtcgag aacctgccgg cggatggcaa agcggatatg
    51541 ctgcccggcg tgataaccca cccgttcgcg taaccagacc acccatgcgc gcagtacaaa
    51601 ggtcagaacc agtaacgtaa agggaagcag cagggcttca cggggaatat tctccataat
    51661 catatgttgc agaattcgcg ccatgaacca ggcctgggca atgatcaata tgccgctcac
    51721 aaagcccagc agacgagaaa tattcagcca acgttgggag atgacgcttt gctgttttaa
    51781 ccagcgggtt aactcttttt gacgagattt attcattgca cgcttagcag gtgagttatc
    51841 agaattattt gcagagcaat gttacaacgg ggaaaaaata aaggcgaccc atagtcgcaa
    51901 ggtgtcgcct tctttacttt tgttactgat ttgtaaaatt attttgcgtc agctaaacca
    51961 tcgaggtagc gttccgcatc aagtgctgcc atgcagcctg taccggccga agtaatggcc
    52021 tgacgataaa tatgatccat cacgtcaccc gcggcaaaga cgccaggaat gctggtctgg
    52081 gtggcattac catgaatacc cgactgtact ttgatgtagc cgttttccag ttccagctgc
    52141 ccttcgaaaa tggcagtatt cgggctgtga ccgatagcaa caaacagacc ggcaacgtcg
    52201 agtgattcga tgttatcgct gttttgcgta tcgcgcagac gaacgccagt gacacccatt
    52261 tgatcgccgg tcacttcttc cagcgtccgg ttggtgtgca gaatgatgtt gccgttctcc
    52321 actttatcca tcagacgctt aatgaggatt ttttccgcgc ggaaaccgtc acggcggtga
    52381 atcagatgta cttccgaagc gatgttagac agatacaacg cctcttcaac cgcggtattg
    52441 ccgccgccga tgaccgcaac tttctggttg cgatagaaga aaccgtcgca ggttgcacaa
    52501 gcagaaaccc cacggccttt aaaggcttct tcagagggca ggccgagata gcgtgcagaa
    52561 gctccggtgg caataatcag cgcgtcgcaa gtgtattcgc cgttatcgcc attcagacgg
    52621 aacggacggt tttgcagatc caccttgttg atatgatcaa aaatgatttc agtttcaaat
    52681 ttggtggcat gttcgtgcat gcgctccatt aataacggac cggtcagatc gtttggatcg
    52741 ccaggccagt tttccacttc tgtggtggtg gtcagttggc cgcctttttc catgccggta
    52801 atcagcacag gttgcaggtt ggcgcgcgcc gcatagacag cagcggtgta tcccgccggg
    52861 cctgaaccca ggataagcag tttactgtgt ttggtcgtgc ccatgagatc cccatagttg
    52921 ttggcagaca atgggcagga ttgtagggaa tttactgacg taaaaaaaga gtatgacgat
    52981 tttgttaaca atttgtgcaa tcggcagcat cgataagcag gtcaaattct cccgtcatta
    53041 tcacctctgc tacttaaatt tcccgcttta taagctgatt aaatgatgaa taaacgcccc
    53101 tgttaatgaa tatctggcat gttgtactaa aaatcgatgt tttgctttga caatcccctg
    53161 gtgttttgcg aaaacattcg aggaagaaaa aaaacagtat tcttatatgc gcataaccat
    53221 gcatgtaaat accatgttta ccgtgctagt gaaatctacg tatggcgtgg acagacgcca
    53281 ttcgtgatgt cgatagctgc cacaaggcaa cggtcttctc accgtagacc caggcattgc
    53341 gcgccgtgaa tcttcatgat ttcggtctat cgtgacgggt agcgactctg aacagtgatg
    53401 tttcagggtc agacaggagt agggaaggaa tacagagaga caataataat ggtagatagc
    53461 aagaagcgcc ctggcaaaga tctcgaccgt atcgatcgta acattcttaa tgagttgcaa
    53521 aaggatgggc gtatttctaa cgtcgagctt tctaaacgtg tgggactttc cccaacgccg
    53581 tgccttgagc gtgtgcgtcg gctggaaaga caagggttta ttcagggcta tacggcgctg
    53641 cttaaccccc attatctgga tgcatcactt ctggtattcg ttgagattac tctgaatcgt
    53701 ggcgcaccgg atgtgtttga acaattcaat accgctgtac aaaaacttga agaaattcag
    53761 gagtgtcatt tagtatctgg tgatttcgac tacctgttga aaacacgcgt gccggatatg
    53821 tcagcttacc gtaagttgct gggggaaacc ctgctgcgtc tgcctggcgt caatgacaca
    53881 cggacatacg ttgttatgga agaagtcaag cagagtaatc gtctggttat taagacgcgc
    53941 taacacggaa caggtgcaaa atcggcgtat tttgattaca ctcctgttaa tccatacagc
    54001 aacagtactg gggtaacctg gtactgttgt ccgttttagc atcgggcagg aaaagcctgt
    54061 aacctggaga gcctttcttg agccaggaat acactgaaga caaagaagtc acattgacaa
    54121 agttaagtag cggccgtcgc cttctggaag cgttgctgat ccttattgtc ctgtttgccg
    54181 tctggttgat ggctgcctta ctaagcttta acccttcgga ccccagctgg tcgcaaacgg
    54241 cctggcatga acctatccat aatttaggtg ggatgcccgg tgcgtggctg gcagatacgc
    54301 tgttctttat ttttggcgtg atggcttaca ccattcccgt cattattgtc ggcggttgtt
    54361 ggtttgcctg gcgtcatcag tccagtgacg aatacattga ttattttgcc gtttcgttac
    54421 gcatcattgg cgttttggcg ctcatcctta cctcctgtgg tctggcggca atcaacgctg
    54481 acgatatctg gtattttgcc tccggtggcg tcattggcag cttactaagc actacgttac
    54541 aaccactgct acacagtagc gggggaacta ttgcgctgct ctgcgtttgg gctgcgggcc
    54601 tgacgctgtt caccggttgg tcatgggtga ccattgctga aaaactcggc ggctggattt
    54661 taaacattct caccttcgcc agtaatcgta cccgtcgcga tgatacctgg gtcgatgaag
    54721 atgaatatga agatgacgaa gagtatgaag atgaaaacca cggcaaacag catgaatcac
    54781 gccgtgcccg tattcttcgc ggcgcgctag cgcgtcgtaa acggttggcg gaaaaattca
    54841 ttaatccgat ggggcggcaa acagacgctg cgttgttctc cggtaagcgg atggatgatg
    54901 aagaagagat tatctacact gcacgcggtg tggctgccga cccggacgac gtcctatttt
    54961 cgggcaatcg tgcaacgcag ccagaatatg acgaatacga tccattatta aacggtgcgc
    55021 caattaccga acctgttgct gtagcagctg ctgctaccac ggcgacacaa agctgggctg
    55081 cgccggttga acctgtgacc cagacgccgc ctgttacttc tgttgatgtt ccaccttcgc
    55141 aacctacagt agcctggcag cctgtaccgg gtccacaaac gggagagccg gttattgctc
    55201 ctgcaccgga aggttaccca cagcagccac aatatgcgca gcctgcagtg caatataatg
    55261 agccgctgca acaacctgta cagccacagc agccgtatta tgcgcctgca gctgaacaac
    55321 ctgtgcaaca accttactac gctcctgcgg cggaacaacc tgttcagcaa ccgtattacg
    55381 caactgcgcc ggaacagcct gcgcaacagc cgtattatgc ccctgcgcca gaacaaccgg
    55441 tggcaggtaa cgcctggcaa gccgaagagc agcaatccac ttttgctcca cagtctacat
    55501 accagactga gcaaacttat cagcagccag ccgctcagga gccgttgtac caacagccgc
    55561 aacccgttga acagcagcct gttgtggagc ctgaacccgt tgtagaagag acaaaacccg
    55621 cgcgtccgcc gctttactat tttgaagaag tggaagagaa gcgagcccgt gaacgtgaac
    55681 aacttgcggc ctggtatcaa ccgattccag aaccggttaa agaaccagaa ccgatcaaat
    55741 cttcgttgaa agcgccttct gctgcagcag tacctccagt agaagccgct gccgctgttt
    55801 ctccgctggc atctggcgtg aaaaaagcga cactggcgac gggggctgcc gcaaccgttg
    55861 ccgcgccagt cttcagtctg gcaaatagcg gtggaccgcg tccgcaagtc aaagagggaa
    55921 ttggcccgca gttgccacga ccgaaacgta ttcgcgtgcc aactcgtcgt gaactggcgt
    55981 cttacggtat taagctgccc tcacagcgtg cggcggaaga gaaagcccgt gaagcccggc
    56041 gcaatcagta tgattctggc gatcagtata acgatgatga aatcgatgcg atgcagcagg
    56101 atgaactggc acgtcagttc gcccagacac agcagcaacg ctatggcgaa cagtatcaac
    56161 atgatgtgcc cgtaaacgca gaagatgcag atgctgcggc agaggctgaa ctggctcgtc
    56221 agtttgcgca aactcaacaa caacgttatt ccggcgaaca accggctggg gcgaatccgt
    56281 tctcgctgga tgattttgaa ttttcgccaa tgaaagcgtt gctggatgat ggtccacacg
    56341 aaccgttgtt tacgccaatt gttgaacctg tacagcagcc gcaacaactg gttgcaccgc
    56401 agcagcagta tcagcagcca caacagccgg ttgcgccaca gcagcaatat cagcagccgc
    56461 aacagccggt tgcgccgcag ccgcagtatc agcagccaca acagcaggtt gcgccgcagc
    56521 cacaatatca gcagccgcaa caaccggttg caccgcagca gcaggatacc ctgcttcatc
    56581 cgctgttgat gcgtaatggc gacagccgtc cgttgcataa accgacgacg ccgctgcctt
    56641 ctctggattt gctgacaccg ccgccgagcg aagtggagcc ggtagatacc tttgcgcttg
    56701 aacaaatggc tcgcctggtg gaagcgcgtc tggctgattt ccgtattaaa gccgatgtcg
    56761 tcaattactc tccggggccg gttatcactc gctttgaact taacctggct cctggcgtaa
    56821 aagcggcgcg catttctaac ttgtcacggg accttgcccg ttcactttcg acggtggcgg
    56881 tgcgtgtcgt tgaagttatt cctggcaaac cctatgtagg tctggagtta ccaaataaaa
    56941 aacgacaaac cgtttatctg cgcgaagttt tggataacgc caaattccgc gataatccgt
    57001 cgccattaac cgtggtgctg ggtaaagata tcgccggtga gccggtggtt gccgatctgg
    57061 cgaaaatgcc gcacttgttg gttgcgggga ctaccggttc cggtaaatct gtcggtgtga
    57121 acgcgatgat cctgagcatg ctttataaag cacagccaga agatgtgcgt ttcatcatga
    57181 tcgacccgaa aatgctggag ctttcggttt atgaaggcat tccgcatctg ttaacggaag
    57241 tcgttactga tatgaaagat gccgccaacg cgctgcgctg gtgtgttaac gagatggagc
    57301 gtcgttataa actgatgtct gcgctgggtg tgcgtaatct ggcgggttat aacgaaaaaa
    57361 ttgctgaagc cgatcgcatg atgcgtccga ttccagaccc gtactggaag ccgggtgaca
    57421 gtatggatgc ccagcatccg gtgctgaaaa aagaaccata cattgtggtg ttggttgacg
    57481 aatttgccga cctgatgatg acggtaggta aaaaagtgga agagctgata gcacgtctgg
    57541 cgcaaaaagc ccgtgccgcg ggtatccacc tcgtactggc aactcagcgt ccatcggttg
    57601 atgttattac tggtctgatt aaagcgaata ttccgacccg tatcgccttt accgtatcca
    57661 gtaagattga ctcacgtacc attcttgatc aggctggcgc ggaatcactg ctggggatgg
    57721 gggatatgct ctactctggg ccgaactcca cgttgccggt acgtgtccat ggtgcttttg
    57781 ttcgcgatca ggaagttcat gccgtggtgc aggactggaa agcgcgtggt cgcccacagt
    57841 atgttgatgg catcacttcc gacagtgaaa gcgaaggtgg cgcgggcggt ttcgatggcg
    57901 ctgaagaact ggatccgttg ttcgatcagg cggtgcagtt tgtcactgaa aaacgcaaag
    57961 cgtcaatttc tggcgtacag cgtcagttcc gcattggtta taaccgtgca gcgcgtatta
    58021 tcgaacagat ggaagcgcag gggattgtca gcgaacaggg gcacaacggt aatcgtgaag
    58081 tgctggcccc accgccgttt gactaattaa tgcattgccg gataaggcgc ggtagcgtcg
    58141 catccggcac tctatcaact gaaaattcag tattttcttt tttcctcaag ctgattatta
    58201 gcctggaata gagagtagag ggaactcccg atcgggagtg acgtaatttg aggaataatg
    58261 atgaaaaaaa ttgccatcac ctgtgcatta ctctcaagct tagtagcaag cagcgtttgg
    58321 gctgatgccg caagcgatct gaaaagccgc ctggataaag tcagcagctt ccacgccagc
    58381 ttcacacaaa aagtgactga cggtagcggt gcggcggtgc aggaaggtca gggcgatctg
    58441 tgggtgaaac gtccaaactt attcaactgg catatgacac aacctgatga aagcattctg
    58501 gtttctgacg gtaaaacact gtggttctat aacccgttcg ttgagcaagc tacggcaact
    58561 tggctgaaag atgccaccgg taatacgccg tttatgctga ttgcccgcaa ccagtccagc
    58621 gactggcagc agtacaatat caaacagaat ggcgatgact ttgtcctgac gccgaaagcc
    58681 agcaatggca atctgaagca gttcaccatt aacgtgggac gtgatggcac aatccatcag
    58741 tttagcgcgg tggagcagga cgatcagcgc agcagttatc aactgaaatc ccagcaaaat
    58801 ggggctgtgg atgcagcgaa atttaccttc accccgccgc aaggcgtcac ggtagatgat
    58861 caacgtaagt agaggcacct gagtgagcaa tctgtcgctc gatttttcgg ataatacttt
    58921 tcaacctctg gccgcgcgta tgcggccaga aaatttagca cagtatatcg gccagcaaca
    58981 tttgctggct gcggggaagc cgttgccgcg cgctatcgaa gccgggcatc tgcattctat
    59041 gatcctctgg gggccaccgg gtaccggcaa aacaactctc gctgaagtga ttgcccgcta
    59101 tgcgaacgct gatgtggaac gtatttctgc cgtcacctct ggcgtgaaag agattcgcga
    59161 ggcgatcgag cgcgcccggc aaaaccgcaa tgcaggtcgc cgcactattc tttttgttga
    59221 cgaagttcac cgtttcaaca aaagccagca ggatgcattt ctgccacata ttgaagacgg
    59281 caccatcact tttattggcg caaccactga aaacccgtcg tttgagctta attcggcact
    59341 gctttcccgt gcccgtgtct atctgttgaa atccctgagt acagaggata ttgagcaagt
    59401 actaactcag gcgatggaag acaaaacccg tggctatggt ggtcaggata ttgttctgcc
    59461 agatgaaaca cgacgcgcca ttgctgaact ggtgaatggc gacgcgcgcc gggcgttaaa
    59521 tacgctggaa atgatggcgg atatggccga agtcgatgat agcggtaagc gggtcctgaa
    59581 gcctgaatta ctgaccgaaa tcgcaggtga acgtagtgcc cgctttgata acaaaggtga
    59641 tcgcttttac gatctcattt ccgcactgca taaatcggta cgtggtagcg cacccgatgc
    59701 ggcgctgtac tggtatgcgc gaattattac tgccggtggc gatccgttat atgttgcgcg
    59761 tcgctgtctg gcgattgcgt ctgaagatgt gggtaatgct gatccacgag cgatgcaggt
    59821 ggcaattgca gcctgggatt gctttactcg cgttggcccg gcggaaggtg aacgcgccat
    59881 tgctcaggcg attgtttacc tggcctgcgc gccaaaaagc aacgctgtct acactgcgtt
    59941 taaagctgcg ctggcggatg ctcgcgaacg tccggattat gacgtgccgg ttcatttgcg
    60001 taatgcgccg acgaaattaa tgaaggaaat gggctacggg caggaatatc gttacgctca
    60061 tgatgaagca aacgcttatg ctgccggtga ggtttacttc ccgcgggaaa tagcacaaac
    60121 acgctattat ttcccgacaa acaggggcct tgaaggcaag attggcgaaa agctcgcctg
    60181 gctggctgaa caggatcaaa atagccccat aaaacgctac cgttaatgtt atcgttgcgg
    60241 taatgttgtt actgtatccc tgtggtcgca ggctgtggcc acatctccca tttaattcga
    60301 taagcacagg ataagcatgc tcgatcccaa tctgctgcgt aatgagccag acgcagtcgc
    60361 tgaaaaactg gcacgccggg gctttaagct ggatgtagat aagctgggcg ctctcgaaga
    60421 gcgtcgtaaa gtattgcagg tcaaaacgga aaacctgcaa gcggagcgta actcccgatc
    60481 gaaatccatt ggccaggcga aagcgcgcgg ggaagatatc gagcctttac gtctggaagt
    60541 gaacaaactg ggcgaagagc tggatgcagc aaaagccgag ctggatgctt tacaggctga
    60601 aattcgcgat atcgcgctga ccatccctaa cctgcctgca gatgaagtgc cggtaggtaa
    60661 agacgaaaat gacaacgttg aagtcagccg ctggggtacc ccgcgtgagt ttgactttga
    60721 agttcgtgac cacgtgacgc tgggtgaaat gcactctggc ctcgactttg cagctgcagt
    60781 taagctgact ggttcccgct ttgtggtaat gaaagggcag attgctcgca tgcaccgcgc
    60841 actgtcgcag tttatgctgg atctgcatac cgaacagcat ggctacagtg agaactatgt
    60901 tccgtacctg gttaaccagg acacgctgta cggtacgggt cagctgccga aatttgctgg
    60961 cgatctgttc catactcgtc cgctggaaga agaagcagac accagtaact atgcgctgat
    61021 cccaacggca gaagttccgc tgactaacct ggtgcgcggt gaaatcatcg atgaagatga
    61081 tctgccaatt aagatgaccg cccacacccc atgcttccgt tctgaagccg gttcatatgg
    61141 tcgtgacacc cgtggtctga tccgtatgca ccagttcgac aaagttgaaa tggtgcagat
    61201 cgtgcgcccg gaagactcaa tggcggcgct ggaagagatg actggtcatg cagaaaaagt
    61261 cctgcagctg ctgggcctgc cgtaccgtaa aatcatcctt tgtaccggcg acatgggctt
    61321 tggcgcttgc aaaacctatg acctggaagt atggatcccg gcacagaaca cctaccgtga
    61381 gatctcttcc tgctccaacg tttgggattt ccaggcacgt cgtatgcagg cacgttgccg
    61441 cagcaagtcg gacaagaaaa cccgtctggt tcataccctg aacggttctg gtctggctgt
    61501 tggtcgtacg ctggttgcag taatggaaaa ctatcagcag gctgatggtc gtattgaagt
    61561 accagaagtt ctgcgtccgt atatgaacgg actggaatat attggctaat acccaatttt
    61621 tctgaatcta aaaagcgcct gcgggcgctt tttttgtctc cctttgatac cgaacaataa
    61681 ttactcctca cttacacgta atactacttt cgagtgaaaa tctacctatc tctttgattt
    61741 tcaaattatt ctatgtatac aagcctatat agcgagctgc tatagaaata attacacaat
    61801 acggtttgtt actggaatca atcgtgagca agcttgagtg agccattatg aaaacgaaaa
    61861 tccctgatgc ggtattggct gctgaggtga gtcgccgtgg tttggtaaaa acgacagcga
    61921 tcggcggcct ggcaatggcc agcagcgcat taacattacc ttttagtcgg attgcgcacg
    61981 ctgtcgatag cgccattcca acaaaatcag acgaaaaggt tatctggagc gcctgtacag
    62041 ttaactgtgg tagtcgctgc ccgctacgta tgcacgtcgt ggacggtgaa atcaaatatg
    62101 tcgaaacgga caataccggc gatgacaatt acgacggcct gcactaggtt cgcgcctgcc
    62161 tgcgtgggcg ttccatgcgt cgccgtgtct acaatccgga ccgcctgaaa tatccgatga
    62221 aacgagtcgg ggcgcgcggt gaaggcaaat tcgagcgcat tagctgggaa gaagcctacg
    62281 acatcatcgc gaccaatatg cagcgcctga tcaaagagta cggcaacgag tctatctatc
    62341 tgaactatgg caccggtacg ctgggcggca ccatgacccg ctcctggccg ccgggaaata
    62401 ccctggtcgc gcggctgatg aactgctgcg gcggctatct gaaccattac ggcgactact
    62461 cctccgcgca aattgcggaa ggtttgaact atacctacgg cggctgggca gatggcaaca
    62521 gcccgtcgga tatcgaaaac agtaagctgg tagtgctgtt tggtaataac cctggcgaaa
    62581 cgcgaatgag tggcagtggg gtgacttact atcttgaaca ggcacgccag aaatctaatg
    62641 cccgcatgat catcatcgat ccgcgctata ccgacaccgg tgccgggcgc gaagatgagt
    62701 ggatccctat tcgtccggga acagatgccg cactggttaa cggtctggcg tacgtcatga
    62761 tcactgaaaa cctggtggat caggcattcc tcgataaata ttgcgttggc tacgatgaga
    62821 aaaccctgcc agccagtgcg ccgaaaaatg gccactataa agcttatatt ctgggtgaag
    62881 ggccagatgg cgtggctaaa acaccggaat gggcctcaca aatcaccggt gttccggcag
    62941 acaaaatcat caaactggct cgtgaaatcg gcagtaccaa accggcgttt atcagccagg
    63001 gatggggccc gcagcgtcac gctaacggtg aaatcgcaac ccgtgctatc tcgatgctgg
    63061 cgattctgac cggtaacgtt ggtattaacg gaggcaacag cggcgcgcgt gaaggttcat
    63121 acagcttacc gtttgtccgt atgccgacct tggaaaaccc gatccagacc agcatttcga
    63181 tgtttatgtg gaccgatgcc attgaacgtg gcccggaaat gacggcgctg cgtgatggtg
    63241 tacgcgggaa agataagctg gatgtgccga tcaaaatgat ctggaactat gccggtaact
    63301 gcctgattaa ccagcattct gaaatcaacc gtacccatga aatccttcag gatgataaga
    63361 agtgcgagct gattgtggtt atcgactgcc acatgacctc atcggcgaaa tatgctgaca
    63421 tcctgctgcc tgactgcacc gcttccgaac agatggactt tgcgctggat gcatcctgcg
    63481 ggaatatgtc ttacgtgatt ttcaacgatc aggtgattaa accgcgcttt gaatgtaaga
    63541 ccatctatga aatgaccagc gaactggcaa aacgtcttgg cgttgagcaa cagtttactg
    63601 aaggccgtac acaggaagag tggatgcggc atctgtatgc ccagtcgcgg gaagcgattc
    63661 ctgaactacc aacgtttgaa gagttccgca agcaggggat ctttaaaaag cgcgacccac
    63721 aagggcacca cgttgcttat aaagctttcc gtgaagatcc tcaggcaaat tcactgacca
    63781 cgccatcggg caaaattgag atttattcgc aggcgctggc tgacattgcc gctacctggg
    63841 aattgccaga aggagatgtg atcgatccac tgccgatcta cacgccgggc tttgaaagtt
    63901 atcaggatcc gttgaacaaa cagtatccgc tgcagcttac gggtttccac tataaatctc
    63961 gcgttcactc aacttacggc gacgttgatg tgctgaaagc agcttgccgt caggaaatgt
    64021 ggatcaaccc gcttgatgcg caaaaacgcg gtatcaacaa cggcgataaa gtcaggatct
    64081 ttaacgatct tggtgaggtt catattgagg cgaaagtgac gccacgaatg atgccgggtg
    64141 tggtcgcact gggtgaaggt gcctggtatg acccggatac aaaacgtgtc gataagggcg
    64201 gttgtatcaa cgtactgacc actcaacgtc cgtctcctct cgctaagggg aatccgtcac
    64261 atacaaacct tgttcaggtt gaaaaggtgt aaggagtaac cgatgacaac ccagtatgga
    64321 ttttttattg attccagccg ttgcaccggt tgcaaaacct gcgagctggc ctgtaaagac
    64381 tacaaagatt tgacgccaga agtcagcttc cgccgcattt atgaatatgc tggcggcgac
    64441 tggcaggaag ataacggtgt ctggcaccag aacgtgtttg cctactatct gtcgatttca
    64501 tgtaaccact gcgaagatcc ggcttgtact aaagtctgcc cgagcggtgc gatgcataaa
    64561 cgtgaagatg gttttgttgt ggtcgatgaa gatgtgtgca ttggctgccg ctactgccat
    64621 atggcttgcc cgtatggc
//
LOCUS       DADMJB010000006        58360 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.006, whole genome shotgun sequence.
ACCESSION   DADMJB010000006 DADMJB010000000
VERSION     DADMJB010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 58360)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 58360)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..58360
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.006"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..566)
                     /locus_tag="JN078_000361"
     CDS             complement(<1..566)
                     /locus_tag="JN078_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414930.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9039677.1"
                     /translation="MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMI
                     SYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSG
                     FPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTF
                     LLIAVFNIAVMASVYFWVPDIRDEAKGKL"
     gene            complement(692..3829)
                     /gene="sbcC"
                     /locus_tag="JN078_000362"
     CDS             complement(692..3829)
                     /gene="sbcC"
                     /locus_tag="JN078_000362"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308474.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease subunit SbcC"
                     /protein_id="HAY9039678.1"
                     /translation="MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKT
                     TLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRAR
                     NQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAA
                     FLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQV
                     QSLTASLQVLTDEEKQLLTAQQQEQQSLNWLTRLDELQQEASRRQQALQQALAEEEKA
                     QPQLAALSLAQPARNLRPHWERIAEHSAALAHTRQQIEEVNTRLQSTMALRASIRHHA
                     AKQSAELQQQQQSLNTWLQEHDRFRQWNNELAGWRAQFSQQTSDREHLRQWQQQLTHA
                     EQKLNALAAITLTLTADEVATALAQHAEQRPLRQRLVALHGQIVPQQKRLAQLMVTIQ
                     NGSLEQTQRNVALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPL
                     CGSTSHPAVKAYQALEPGVNQSRLLALENEVKKLGEEGAALRGQLDALTKQLQRDENE
                     AQSLRQDEQALTQQWQAVTASLNITLQPQDDIQPWLDAQDEHKRQLRLLSQRHELQGQ
                     IAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEESWLATRQQEAQSWQQRQN
                     ELTTLQNRIQQLTPILETLPQSDDLPHSEETVALDNWRQVHEQCLALHSQQQTLQQQD
                     VLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQT
                     LVTQTAETLAQHQQHRPDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDA
                     DNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQL
                     TRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALSDLVSHKT
                     RIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKI
                     NGLGYSKLESTFAVK"
     gene            complement(3826..5028)
                     /gene="sbcD"
                     /locus_tag="JN078_000363"
     CDS             complement(3826..5028)
                     /gene="sbcD"
                     /locus_tag="JN078_000363"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease subunit SbcD"
                     /protein_id="HAY9039679.1"
                     /translation="MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAII
                     VAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNT
                     TVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIISSQAGLNGIEKQQHLLAAITDY
                     YQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYI
                     ALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVT
                     QPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALAESLPVE
                     VLLVRRSREQRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLH
                     TLAGEHEA"
     gene            5218..5907
                     /gene="phoB"
                     /locus_tag="JN078_000364"
     CDS             5218..5907
                     /gene="phoB"
                     /locus_tag="JN078_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000113934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate response regulator transcription
                     factor PhoB"
                     /protein_id="HAY9039680.1"
                     /translation="MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE
                     PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDY
                     ITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEF
                     KLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTV
                     RGTGYRFSTRF"
     gene            5965..7260
                     /gene="phoR"
                     /locus_tag="JN078_000365"
     CDS             5965..7260
                     /gene="phoR"
                     /locus_tag="JN078_000365"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon sensor histidine kinase PhoR"
                     /protein_id="HAY9039681.1"
                     /translation="MLERLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLI
                     WHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRS
                     GAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRD
                     FSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTP
                     LTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNE
                     KVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTP
                     EGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLA
                     IVKHAVNHHESRLNIESTVGKGTRFSFVIPERLIAKNSD"
     gene            7667..8986
                     /gene="brnQ"
                     /locus_tag="JN078_000366"
     CDS             7667..8986
                     /gene="brnQ"
                     /locus_tag="JN078_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transporter carrier
                     protein BrnQ"
                     /protein_id="HAY9039682.1"
                     /translation="MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTA
                     AFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRT
                     ATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALV
                     ILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGV
                     TEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFG
                     GGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLS
                     QLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAF
                     SDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH"
     gene            9062..10435
                     /gene="proY"
                     /locus_tag="JN078_000367"
     CDS             9062..10435
                     /gene="proY"
                     /locus_tag="JN078_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline-specific permease ProY"
                     /protein_id="HAY9039683.1"
                     /translation="MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSV
                     LLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIV
                     AIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATI
                     IIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEII
                     GITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQH
                     MGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVT
                     VLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVK
                     ALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHD
                     RQLAENQ"
     gene            10591..12313
                     /gene="malZ"
                     /locus_tag="JN078_000368"
                     /pseudo
     CDS             10591..12313
                     /gene="malZ"
                     /locus_tag="JN078_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706291.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin glucosidase"
     gene            complement(12318..12899)
                     /gene="acpH"
                     /locus_tag="JN078_000369"
     CDS             complement(12318..12899)
                     /gene="acpH"
                     /locus_tag="JN078_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP phosphodiesterase"
                     /protein_id="HAY9039684.1"
                     /translation="MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHM
                     YRRIDVLTDNLPEVREAREWFRRETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFI
                     CYARKQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALR
                     DSWYDLNAHYTALGTRFWQFYPRMMAQASHKAL"
     gene            12992..14062
                     /gene="queA"
                     /locus_tag="JN078_000370"
     CDS             12992..14062
                     /gene="queA"
                     /locus_tag="JN078_000370"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HAY9039685.1"
                     /translation="MRVTDFFFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFT
                     DLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPK
                     PGAELLLGDDESINATMTARHGALFEVEFNDDRSVLDILNSIGHMPLPPYIDRPDEDA
                     DRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVD
                     TIEDHIMHSEYAEVPQDVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPF
                     FDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRF
                     FSYGDAMFITYNPQAINERVGE"
     gene            14118..15245
                     /gene="tgt"
                     /locus_tag="JN078_000371"
     CDS             14118..15245
                     /gene="tgt"
                     /locus_tag="JN078_000371"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HAY9039686.1"
                     /translation="MKFELDTTDGRARRGRLVFDRGVVETPCFMPVGTYGTVKGMTPE
                     EVEATGAQIILGNTFHLWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIR
                     KITEQGVHFRNPINGDPIFLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSME
                     MSLRWAKRSRERFDSLGNKNALFGIIQGSVYEDLRDISVKGLVDIGFDGYAVGGLAVG
                     EPKADMHRILEHVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGH
                     LFVTDGVVKIRNAKYKSDTGPLDPECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHN
                     LRYYQRLMAGLRKAIEEGKLESFVTDFYQRQGREVPPLNVD"
     gene            15268..15600
                     /gene="yajC"
                     /locus_tag="JN078_000372"
     CDS             15268..15600
                     /gene="yajC"
                     /locus_tag="JN078_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000007628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HAY9039687.1"
                     /translation="MSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQK
                     RTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAENGYIAIALNDTTEVVIKRDFVAAVL
                     PKGTMKAL"
     gene            15628..17475
                     /gene="secD"
                     /locus_tag="JN078_000373"
     CDS             15628..17475
                     /gene="secD"
                     /locus_tag="JN078_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HAY9039688.1"
                     /translation="MLNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVA
                     ASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDSTDTQLRAREALMGVMGDKYVVA
                     LNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLRE
                     KGIPYTTVRKENNYGLSITFRDAKARDEAIAYLSKRHPDLVISSQGSNQLRAVMSDAR
                     LSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGAT
                     ATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQD
                     EYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEV
                     INIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNI
                     EQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIA
                     GIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVII
                     LYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI"
     gene            17486..18457
                     /gene="secF"
                     /locus_tag="JN078_000374"
     CDS             17486..18457
                     /gene="secF"
                     /locus_tag="JN078_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HAY9039689.1"
                     /translation="MAQEYTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVR
                     GFNWGLDFTGGTVIEITLEKPAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAE
                     GETGGQVLGSQVLKVINESTNQNAAVKRIEFVGPSVGADLTQTGAMALMAALLSILVY
                     VGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVS
                     DRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLMVILMLYLFGGPVLEGFSLT
                     MLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPSILP"
     gene            18586..18933
                     /locus_tag="JN078_000375"
     CDS             18586..18933
                     /locus_tag="JN078_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH nuclease family protein"
                     /protein_id="HAY9039690.1"
                     /translation="MAIIPKNYARLESGYREKALKIYPWVCGRCSREFVYSNLRELTV
                     HHIDHDHTNNPEDGSNWELLCLYCHDHEHSKYTEADQYGTTVIAGEDAQKDVGEAKYN
                     PFADLKAMMNKKK"
     gene            complement(19110..19994)
                     /locus_tag="JN078_000376"
     CDS             complement(19110..19994)
                     /locus_tag="JN078_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-specific channel-forming protein Tsx"
                     /protein_id="HAY9039691.1"
                     /translation="MKKTLLAAGAVLALSSSFTVNAAENDKPQYLSDWWHQSVNVVGS
                     YHTRFGPQIRNDTYLEYEAFAKKDWFDFYGYADAPVFFGGNSDAKGIWNHGSPLFMEI
                     EPRFSIDKLTNTDLNFGPFKEWYFANNYIYDMGRNKNGRQSTWYMGLGTDIDTGLPMS
                     LSMNVYAKYQWQNYGAANENEWDGYRFKIKYFVPITDLWGGQLSYIGFTNFDWGSDLG
                     DDSGNAINGIKTRTNNSIASSHILALNYDHWHYSVVARYWHDGGQWNDDAELNFGNGN
                     FNVRSTGWGGYLVVGYNF"
     gene            complement(20293..20832)
                     /locus_tag="JN078_000377"
     CDS             complement(20293..20832)
                     /locus_tag="JN078_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3251 domain-containing protein"
                     /protein_id="HAY9039692.1"
                     /translation="MNTNVFRLLLLGSLFSLSACVQQSEVRQMKHSVSTLNQEMTQLN
                     QETVKITQQNRLNAKSSSGGYLLPGAKTPARLESQIGTLRMSLVNITPDTDGTPLTLR
                     IQGESNDPLPAFSGTVEYGQIQGTIDNFQEINVQNQLINAPASVLAPSDVDIPLQLKG
                     ISVDQLGFVRIHDIQPVMQ"
     gene            20983..21432
                     /gene="nrdR"
                     /locus_tag="JN078_000378"
     CDS             20983..21432
                     /gene="nrdR"
                     /locus_tag="JN078_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017458860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HAY9039693.1"
                     /translation="MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVA
                     ELVMPRVVKSNDVREPFNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGERE
                     VPSKMIGNLVMEQLKKLDKVAYIRFASVYRSFEDIKEFGEEIARLED"
     gene            21436..22539
                     /gene="ribD"
                     /locus_tag="JN078_000379"
     CDS             21436..22539
                     /gene="ribD"
                     /locus_tag="JN078_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HAY9039694.1"
                     /translation="MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQ
                     RAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQD
                     PNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGR
                     TAMASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWSELDEQTQAL
                     YPQQNLRQPVRIVIDSQNRVTPEHHIVQQPGETWFARTQEDSREWPETVRTLLIPEHK
                     GHLDLVVLMMQLGKQQINSIWGEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLC
                     TLPGLEKLADAPQFKFKEIRHVGPDVCLHLVGA"
     gene            22628..23098
                     /gene="ribE"
                     /locus_tag="JN078_000380"
     CDS             22628..23098
                     /gene="ribE"
                     /locus_tag="JN078_000380"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006818760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HAY9039695.1"
                     /translation="MNIIEANVATPDARVAITIARFNNFINDSLLEGAIDALKRIGQV
                     KDENITVVWVPGAYELPLAAGALAKTGKYDAVIALGTVIRGGTAHFEYVAGGASNGLA
                     HVAQDSEIPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA"
     gene            23118..23537
                     /gene="nusB"
                     /locus_tag="JN078_000381"
     CDS             23118..23537
                     /gene="nusB"
                     /locus_tag="JN078_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HAY9039696.1"
                     /translation="MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD
                     VLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKV
                     AINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK"
     gene            23615..24592
                     /gene="thiL"
                     /locus_tag="JN078_000382"
     CDS             23615..24592
                     /gene="thiL"
                     /locus_tag="JN078_000382"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HAY9039697.1"
                     /translation="MACGEFSLIARYFDRVRSSRLDVELGIGDDCALLNIPEKQTLAI
                     STDTLVAGNHFLPDIDPADLAYKALAVNLSDLAAMGADPAWLTLALTLPDVDEAWLES
                     FSDSLFDLLNYYDMQLIGGDTTRGPLSMTLGIHGFVPMGRALTRSGAKPGDWIYVTGT
                     PGDSAAGLAILQNRLQVADAKDADYLIKRHLRPSPRILQGQALRDLANSAIDLSDGLI
                     SDLGHIVKASDCGVRIDLALLPFSDALSRHVEPEQALRWALSGGEDYELCFTVPELNR
                     GALDVALGHLGVPFTCIGQMTADIEGLCFIRDGEPVTLDWKGYDHFATP"
     gene            24570..25088
                     /gene="pgpA"
                     /locus_tag="JN078_000383"
     CDS             24570..25088
                     /gene="pgpA"
                     /locus_tag="JN078_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HAY9039698.1"
                     /translation="MTILPRHKDVAKSRLKMSNPWHLLAVGFGSGLSPIVPGTMGSLA
                     AIPFWYLMTFLPWQLYSLVVMLGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITL
                     MALPTNDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILY
                     FIGHHWPLGILS"
     gene            complement(25142..26116)
                     /gene="yajO"
                     /locus_tag="JN078_000384"
     CDS             complement(25142..26116)
                     /gene="yajO"
                     /locus_tag="JN078_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414953.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxyxylulose-5-phosphate synthase YajO"
                     /protein_id="HAY9039699.1"
                     /translation="MQYNPLGKTDLRVSRLCLGCMTFGEPDRGNHAWTLPEESSRPII
                     KRALEGGINFFDTANSYSDGSSEEIVGRALRDFARREDVVVATKVFHRVGDLPEGLSR
                     AQILRSIDDSLRRLGMDYVDILQIHRWDYNTPIEETLEALNDVVKAGKARYIGASSMH
                     ASQFAQALELQKQHGWAQFVSMQDHYNLIYREEEREMLPLFYQEGVAVIPWSPLARGR
                     LTRPWGETTARLVSDEVGKNLYKESDENDAQIAERLTGVSEELGATRAQVALAWLLSK
                     PGIAAPIIGTSREEQLDELLNAVDITLKPEQIAELETPYKPHPVVGFK"
     gene            complement(26171..28033)
                     /gene="dxs"
                     /locus_tag="JN078_000385"
     CDS             complement(26171..28033)
                     /gene="dxs"
                     /locus_tag="JN078_000385"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HAY9039700.1"
                     /translation="MSFDIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVS
                     RSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKG
                     GLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMA
                     FEAMNHAGDIRPDMLVVLNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSG
                     VPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDLKGPQ
                     FLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPSYSKIFGDWLCETAA
                     KDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIY
                     STFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMT
                     PSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEKLPIGKGIVKRRGEKLAI
                     LNFGTLMPEAAKVAESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAG
                     SGVNEVLMAHRKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWLA"
     gene            complement(28058..28957)
                     /gene="ispA"
                     /locus_tag="JN078_000386"
     CDS             complement(28058..28957)
                     /gene="ispA"
                     /locus_tag="JN078_000386"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl diphosphate synthase"
                     /protein_id="HAY9039701.1"
                     /translation="MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGG
                     KRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCH
                     VKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQAL
                     DLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLA
                     FQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQ
                     LAEQSPDTSALEALADYIIQRNK"
     gene            complement(28957..29199)
                     /gene="xseB"
                     /locus_tag="JN078_000387"
     CDS             complement(28957..29199)
                     /gene="xseB"
                     /locus_tag="JN078_000387"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015571292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HAY9039702.1"
                     /translation="MPKKNEAPASFEKALSELEQIVTRLESGDLPLEEALNEFERGVQ
                     LARQGQAKLQQAEQRVQILLSDNEDASLTPFTPDNE"
     gene            29405..30853
                     /gene="thiI"
                     /locus_tag="JN078_000388"
     CDS             29405..30853
                     /gene="thiI"
                     /locus_tag="JN078_000388"
                     /EC_number="2.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014168857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HAY9039703.1"
                     /translation="MKFIIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVV
                     RHWDNIEVRAKDENQRLAIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALVQYRDQL
                     EGKTFCVRVKRRGKHDFSSIDVERYVGGGLNQHIESARVKLTNPEVTVHLEVEDDRLL
                     LIKGRYEGIGGFPIGTQEDVLSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEI
                     GVRQVAHYLWNRFGSSHRVRFVAINFEPVVGEILEKIDDGQMGVILKRMMVRAASKVA
                     ERYGVQALVTGEALGQVSSQTLTNLRLIDNVSDTLILRPLISYDKEHIINLARQIGTE
                     DFARTMPEYCGVISKSPTVKAVKSKIEAEEEKFDFSILDKVVEEANNVDIREIALQTE
                     QEVVEVETVNGFGPNDVILDIRSIDEQEDKPLKVEGIDVVSLPFYKLSTKFGDLDQNR
                     TWLLWCERGVMSRLQALYLREQGFNNVKVYRP"
     gene            complement(30907..31497)
                     /gene="yajL"
                     /locus_tag="JN078_000389"
     CDS             complement(30907..31497)
                     /gene="yajL"
                     /locus_tag="JN078_000389"
                     /EC_number="3.5.1.124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308505.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein deglycase YajL"
                     /protein_id="HAY9039704.1"
                     /translation="MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLA
                     ITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIV
                     AAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVKLLTSQGPGT
                     AIDFGLKIIDLQVGREKAHEVASQLVMAAGIYNYYE"
     gene            complement(31460..32371)
                     /gene="panE"
                     /locus_tag="JN078_000390"
     CDS             complement(31460..32371)
                     /gene="panE"
                     /locus_tag="JN078_000390"
                     /EC_number="1.1.1.169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HAY9039705.1"
                     /translation="MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSANLVET
                     DGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGT
                     IEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVL
                     PDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIERE
                     GHHTSAEDLRDYVMQVIDATAENISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVP
                     ENTRLFEMVKRKESEYERIGTGLPRPW"
     gene            32539..33030
                     /gene="yajQ"
                     /locus_tag="JN078_000391"
     CDS             32539..33030
                     /gene="yajQ"
                     /locus_tag="JN078_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414960.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide binding protein YajQ"
                     /protein_id="HAY9039706.1"
                     /translation="MPSFDIVSEVDLQEARNAVDNASREVESRFDFRNVEASFELNDA
                     SKTIKVLSESDFQVNQLLDILRAKLLKRGIEGSSLDVPENIVHSGKTWFVEAKLKQGI
                     ESATQKKIVKMIKDSKLKVQAQIQGDEIRVTGKSRDDLQAVMAMVRGGDLGQPFQFKN
                     FRD"
     gene            complement(33158..34522)
                     /locus_tag="JN078_000392"
     CDS             complement(33158..34522)
                     /locus_tag="JN078_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308508.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9039707.1"
                     /translation="MNDYKMTPGERRATWGLGTVFSLRMLGMFMVLPVLTTYGMALQG
                     ASEALIGIAIGIYGLTQAVFQIPFGLLSDRIGRKPLIVGGLAVFAAGSVIAALSDSIW
                     GIILGRALQGSGAIAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITH
                     KLGLHALFWMIAILATTGIALTIWVVPNSSTHVLNRESGMVKGSFSKVLAEPRLLKLN
                     FGIMCLHILLMSTFVALPGQLADAGFPAAEHWKVYLATMLIAFGSVVPFIIYAEVKRK
                     MKQVFVFCVGLIVVAEIVLWNAQTQFWQLVVGVQLFFVAFNLMEALLPSLISKESPAG
                     YKGTAMGVYSTSQFLGVAIGGSLGGWIDGMFDGQGVFLAGAMLAAVWLAVASTMKEPA
                     YVSSLRIEIPANIAANEALKVRLLETEGIKEVLIAEEEHSAYVKIDSKVTNRFDVEQA
                     IRQA"
     gene            complement(34671..35561)
                     /gene="cyoE"
                     /locus_tag="JN078_000393"
     CDS             complement(34671..35561)
                     /gene="cyoE"
                     /locus_tag="JN078_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX farnesyltransferase"
                     /protein_id="HAY9039708.1"
                     /translation="MMFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLV
                     GVSLVVASGCVFNNYIDRDIDRKMERTKNRVLVKGLISPAVSLVYATLLGIAGFMLLW
                     FGANPLACWLGVMGFVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGEFDS
                     GAAILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKNHITLYIIAFAV
                     ATLMLSLGGYAGYKYLVVAAAVSVWWLGMALRGYKVADDRIWARKLFGFSIIAITALS
                     VMMSVDFMVPDSHTLLAAVW"
     gene            complement(35573..35902)
                     /locus_tag="JN078_000394"
     CDS             complement(35573..35902)
                     /locus_tag="JN078_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit IV"
                     /protein_id="HAY9039709.1"
                     /translation="MSHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPA
                     VILGTILAMAVVQVLVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNL
                     NYNMMMH"
     gene            complement(35902..36516)
                     /locus_tag="JN078_000395"
     CDS             complement(35902..36516)
                     /locus_tag="JN078_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit III"
                     /protein_id="HAY9039710.1"
                     /translation="MATDTLTHATAHAHEHGHHDAGGTKIFGFWIYLMSDCILFSILF
                     ATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWL
                     ALTCLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVL
                     MVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM"
     gene            complement(36506..38497)
                     /gene="cyoB"
                     /locus_tag="JN078_000396"
     CDS             complement(36506..38497)
                     /gene="cyoB"
                     /locus_tag="JN078_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002444673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit I"
                     /protein_id="HAY9039711.1"
                     /translation="MFGKLSLDAVPFHEPIVMVTIAGIILGGLALVGLITYFGKWTYL
                     WKEWLTSVDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQI
                     FTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSL
                     GVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAP
                     GMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYI
                     NLIWAWGHPEVYILILPVFGVFSEIAATFSRKRLFGYTSLVWATVCITVLSFIVWLHH
                     FFTMGAGANVNAFFGITTMIIAIPTGVKIFNWLFTMYQGRIVFHSAMLWTIGFIVTFS
                     VGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAFGFKLNE
                     TWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQIDPQFHTMLMIAASGAVLIALG
                     ILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWANSSPPPFYNFAVVPHVHERDAFWE
                     MKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMIWHIWWLAIVGFAGMIIT
                     WIVKSFDEDVDYYVPVAEIEKLENQHFDEITKAGLKNGN"
     gene            complement(38519..39466)
                     /gene="cyoA"
                     /locus_tag="JN078_000397"
     CDS             complement(38519..39466)
                     /gene="cyoA"
                     /locus_tag="JN078_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit II"
                     /protein_id="HAY9039712.1"
                     /translation="MRLRKYNKSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLI
                     LTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIF
                     LAVLTWKTTHALEPSKPLAHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTP
                     VYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGM
                     KFKAIATPDRAEFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFAD
                     VINKFMAHGKSMDMTQPEGEHSAHEGMEGMDMSHAESAH"
     gene            complement(39927..41402)
                     /gene="ampG"
                     /locus_tag="JN078_000398"
     CDS             complement(39927..41402)
                     /gene="ampG"
                     /locus_tag="JN078_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="muropeptide MFS transporter AmpG"
                     /protein_id="HAY9039713.1"
                     /translation="MSSQYLRIFQQPRSAILLILGFASGLPLALTSGTLQAWMTVENI
                     DLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFFGRRRGWLLATQILLLVAIAAMGFLE
                     PGTQLRWMAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSG
                     GLALWLADKWLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDF
                     FGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGA
                     LYGGILMQRLSLFRALLIFGILQGASNAGYWLLSITDKHLYSMGAAVFFENLCGGMGT
                     SAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWSTFYLFSVAAA
                     VPGLILLLVCRQTLEYTRVNDNFISRTEYPAGYAFAMWTLAAGVSLLAVWLLLLTMDA
                     LDLTHFSFLPALLEVGVLVALSGVVLGGLLDYLALRKTHLT"
     gene            complement(41446..42024)
                     /locus_tag="JN078_000399"
     CDS             complement(41446..42024)
                     /locus_tag="JN078_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HAY9039714.1"
                     /translation="MFKKILFPLVALFMLAGCAKPPTTIEVSPTITLPQQDPSLMGVT
                     VSINGADQRTDQALAKVTRDNQIVTLAASRDLRFLLQEVLEKQMTARGYMVGPNGPVN
                     LQIIVSQLYADVSQGNVRYNIATKADIAIIATAQNGNKITKNYRASYNVEGAFQASNK
                     NIADAVNSVLTDTIADMSQDTSIHEFIKQNAR"
     gene            42329..42646
                     /gene="bolA"
                     /locus_tag="JN078_000400"
     CDS             42329..42646
                     /gene="bolA"
                     /locus_tag="JN078_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414969.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator BolA"
                     /protein_id="HAY9039715.1"
                     /translation="MMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLV
                     SDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTYTIKEWEGLQDTVFASPPCRGAG
                     SIA"
     gene            42990..44288
                     /gene="tig"
                     /locus_tag="JN078_000401"
     CDS             42990..44288
                     /gene="tig"
                     /locus_tag="JN078_000401"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001716227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HAY9039716.1"
                     /translation="MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGF
                     RKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLGED
                     FTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDADVDGMLDTLRKQQATWKEKDSAVEA
                     EDRVTIDFTGSVDSEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFP
                     EEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMER
                     ELKSAIRNRVKSQAIEGLVKANDIDVPAALIDSEIDVLRRQAAQRFGGNEKQALELPR
                     ELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKGLIEEMASAYEDPKEVIEFYSKNK
                     ELMDNMRNVALEEQAVEAVLAKAKVTEKETTFNELMNQQA"
     gene            44533..45156
                     /gene="clpP"
                     /locus_tag="JN078_000402"
     CDS             44533..45156
                     /gene="clpP"
                     /locus_tag="JN078_000402"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HAY9039717.1"
                     /translation="MSYSGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIF
                     LTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVS
                     TICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVK
                     GRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN"
     gene            45282..46556
                     /gene="clpX"
                     /locus_tag="JN078_000403"
     CDS             45282..46556
                     /gene="clpX"
                     /locus_tag="JN078_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001396736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATP-binding subunit ClpX"
                     /protein_id="HAY9039718.1"
                     /translation="MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLC
                     NDIIREEIKEVAPHRERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG
                     DTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN
                     IIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT
                     VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKA
                     KSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALT
                     KQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMED
                     VEKVVIDESVIDGQSKPLLIYGKPEAQQASGE"
     gene            46744..49098
                     /gene="lon"
                     /locus_tag="JN078_000404"
     CDS             46744..49098
                     /gene="lon"
                     /locus_tag="JN078_000404"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001469947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HAY9039719.1"
                     /translation="MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAM
                     DHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISA
                     LSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSID
                     DPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVK
                     KQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQ
                     KLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRI
                     LEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR
                     GHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNV
                     AFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLP
                     KQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLK
                     HIEINGDNLHDYLGVQRFDYGRADNENCVGQVTGLAWTEVGGDLLTIETACVPGKGKL
                     TYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGI
                     AMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFEN
                     KRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGMQVVTAK"
     gene            49307..49579
                     /gene="hupB"
                     /locus_tag="JN078_000405"
     CDS             49307..49579
                     /gene="hupB"
                     /locus_tag="JN078_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016535194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein HU-beta"
                     /protein_id="HAY9039720.1"
                     /translation="MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVAL
                     VGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN"
     gene            49771..51642
                     /gene="ppiD"
                     /locus_tag="JN078_000406"
     CDS             49771..51642
                     /gene="ppiD"
                     /locus_tag="JN078_000406"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HAY9039721.1"
                     /translation="MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNYAAK
                     VNDQEISRGQFENAFNSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLD
                     QYARELKLGISDEQVKQAIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQL
                     TTQQLINGVAGTDFMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYY
                     EQNKNNFMTPEQFRVSYIKLDAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQT
                     KTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKE
                     KGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVS
                     DAASNDTESLAGAEQAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPG
                     INSDIITVDGDRAFVLRISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLV
                     DLKAGKGAEAMQAAGLKFGEPKTLSRSGRDPISQAAFALPLPAKDKPSYGMATDMQGN
                     VVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ"
     gene            51793..52164
                     /locus_tag="JN078_000407"
     CDS             51793..52164
                     /locus_tag="JN078_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9039722.1"
                     /translation="MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAA
                     QSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVED
                     LKQVPGMGNSLVERNLAVLTL"
     gene            52258..52656
                     /locus_tag="JN078_000408"
     CDS             52258..52656
                     /locus_tag="JN078_000408"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbgC/FadM family acyl-CoA thioesterase"
                     /protein_id="HAY9039723.1"
                     /translation="MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWM
                     TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITLEPEGQVVADA
                     LITFVCIDLKTQKALALEGELREKLEQMVK"
     gene            complement(52708..53403)
                     /gene="queC"
                     /locus_tag="JN078_000409"
     CDS             complement(52708..53403)
                     /gene="queC"
                     /locus_tag="JN078_000409"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HAY9039724.1"
                     /translation="MKRAVVVFSGGQDSTTCLVQALQQYDEVHCVTFDYGQRHRAEID
                     VARELALKLGARAHKVLDVTLLNELAVSSLTRDSIPVPDYEPEADGIPNTFVPGRNIL
                     FLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVSLGMAKDIRFETPL
                     MWIDKAETWALADYYGKLDLVRNETLTCYNGIKGDGCGHCAACNLRANGLNHYLADKP
                     TVMAAMKQKTGLR"
     gene            complement(53468..55168)
                     /locus_tag="JN078_000410"
     CDS             complement(53468..55168)
                     /locus_tag="JN078_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgrR family transcriptional regulator"
                     /protein_id="HAY9039725.1"
                     /translation="MRLLNRLNQYQRLWQPSAGKPQTVTVSELAERCFCSERHVRTLL
                     RQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQALETGKQQDVLELAQLAPG
                     ELRTLLQPFMGGQWQNDTPTLRIPYYRPLEPLQPGFLPGRAEQHLAGQIFSGLTRFDN
                     NTQRPIGDLAHHWETSTDGLRWDFYLRSTLHWHNGDAVKASHLHQRLLMLLQLPALDQ
                     LFISVKRIEVTHPQCLTFFLHRPDYWLAHRLASYCSHLAHPQFPLIGTGPFRLTQFTA
                     ELVRLESHDYYHLRHPLLKAVEYWITPPLFEKDLGTSCRHPVQITIGKPEELQRVSQV
                     SSGISLGFCYLTLRKSPRLSLWQARKVISIIHQSGLLQTLEVGENLITASHALLPGWT
                     IPHWQVPDEVKLPKTLTLVYHLPIELHTMAERLQATLAAEGCELTIIFHNAKNWDDTT
                     LLAHADLMMGDRLIGEAPEYTLEQWLRCDPLWPHVFDAPAYAHLQSTLDAVQVMPDEE
                     NRFNALKAVFSQLMADATLTPLFNYHYRISAPPGVNGVRLTPRGWFEFTEAWLPAPSQ
                     "
     gene            55268..56050
                     /gene="cof"
                     /locus_tag="JN078_000411"
     CDS             55268..56050
                     /gene="cof"
                     /locus_tag="JN078_000411"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414980.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HMP-PP phosphatase"
                     /protein_id="HAY9039726.1"
                     /translation="MARLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGR
                     HALEMQHILGALSLDAYLITGNGTRVHSLEGELLHRDDLPADVAELVLYQQWDTRASM
                     HIFNDDGWFTGKEIPALLQAFVYSGFRYQIIDVKKMPLGSVTKICFCGDHDDLTRLQI
                     QLYEALGERAHLCFSATDCLEVLPVGCNKGAALTVLTQHLGLSLRDCMAFGDAMNDRE
                     MLGSVGSGFIMGNAMPQLRAELPHLPVIGHCRNQAVSHYLTH"
     gene            56152..56697
                     /locus_tag="JN078_000412"
     CDS             56152..56697
                     /locus_tag="JN078_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706341.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HAY9039727.1"
                     /translation="MVFKPHRINCRDFTFKIELKEKKILCGRAMLDKIDRKLLALLQQ
                     DCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKIGLGLTAFVLIKTQ
                     HHSSEWYCRFVTVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEFYKRLVNSVPGL
                     SDVTSSFAMEQIKYTTSLPIE"
     gene            56727..>58360
                     /locus_tag="JN078_000413"
     CDS             56727..>58360
                     /locus_tag="JN078_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SmdA family multidrug ABC transporter
                     permease/ATP-binding protein"
                     /protein_id="HAY9039728.1"
                     /translation="MRLFAQLSWYFRREWRRYLGAVALLVIIAMLQLVPPKVVGIVVD
                     GVTEQHFTTGQILMWIATMVLIAVVVYFLRYVWRVLLFGASYQLAVELREDYYRQLSR
                     QHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIMMSTQISWQL
                     TLFALLPMPVMAIMIKRNGDALHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR
                     QSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVQGSLTLGQ
                     LTSFMMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVNDGSEPVPEGRGE
                     LDVNIHQFTYPQTDHPALENVNFALKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGD
                     IRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGCPNATQQEIEHVARLAS
                     VHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLVNAEILILDDALSAVDGRTE
                     HQNLHNLRQWGQGRTVIISAHRLSALTEASENVMNAS"
BASE COUNT        14069 a        14605 c        15669 g        14017 t
ORIGIN      
        1 agctttcctt tcgcctcgtc gcgaatatcc ggcacccaaa aatagaccga tgccatcacc
       61 gcaatattaa aaacagcgat caataaaaag gtgtaacgcc agctaaattc ctgacttaaa
      121 tacgttccca gcggaatgcc cagcaaattg gcgactgtca tcccggaaac catccccgcc
      181 acggcggcgg tgacttttcc gggtttgata atttttgata acacgatcgc gccgacgcca
      241 aaaaatgcgc catgcggaaa gccggatacc agccgaccaa tggcgagcat caggtaagac
      301 gaagagagcg tgaacatggc gttgccaatg acgcacaacg ccaccagaaa caacaagata
      361 tgtttgagtg agtagcggct ggaaaagagt gcgatgattg gcgcaccgac caccactccc
      421 agtgcataat acgagatcat atgcccggca gcaggaatcg aaattcctac gttatgcgcc
      481 agctccgtga gcacgcccat aatgccaaat tcggccatcc ccaaaccaaa cgtgcccaga
      541 gccaaagata aaatgacttt tttcatacca ccatcacaac caccagaacg gctaccaatc
      601 accgtagcca ataaagtgat agcttgcagg ataacgacca gcaaggccaa gagataattc
      661 gcccctctgt attcattatc ctgctgaata gttatttcac tgcaaacgta ctttccagtt
      721 tgctgtagcc caggccgttg atctttttca ctttgatctg caccggaata cgctctttca
      781 tcgcttctac gtggctaatc acaccgatgg ttttgccact ggcgttcagg gcatccagcg
      841 catcaagggc ggtatccagc gtttcgctat ccagcgtgcc aaaaccttca tcaaggaaca
      901 gcgagtcaat acgtgtttta tggctgacca gatccgaaag cgccagcgcc agactaacga
      961 ggaaactttc gccgccggaa agggtacggg tatcgcgtac cgcatctgcc tgccaggtat
     1021 caacaacctc gacttccagc gcctcgctgg ctttgcgctg taacagatag cgcccgtgca
     1081 gccgggtaag ttgctgatta gcgagatgga ctaaattatc cagcgtcagc ccctgggcaa
     1141 acttgcggaa tttatcgccc tctttggaac ctattagcga attcagatat ccccagtcct
     1201 caacctgctg cgtcatttga gcaatttgct gcattaaggt ttgttgttgc tgacggttat
     1261 ctgcatcctg cttcagctgc tggcgaatct cgccttgact cgtggtgttt tcacgcaact
     1321 tttggtgagt ttgcgctaac tcttgctgaa tctgctccac cgtcacagtg agagccaacc
     1381 cgtcaggtcg gtgttgttga tgctgtgcca gcgtttctgc tgtctgagtg accagcgttt
     1441 gcgcctgacg gcgctggttt tccagattct gcttgagctg ttccagctgc gttagtgttt
     1501 gttcatccat tagcgccgca aggaacgcct gctgatcgtc aaagacgctg gcctgtagcg
     1561 cggtgtcaaa ctgcgcctgg gctttttgca gactttgcgc cgccagaaca tcctgttgct
     1621 gtaacgtctg ctgctggctg tgtaatgcga gacattgttc atgaacctgc cgccagttat
     1681 ccagcgccac agtttcttcg ctgtgcggga gatcatcact ttgcggcaac gtttccagaa
     1741 tcggcgtcag ctgctgaata cggttttgca gcgtggttaa ttcgttctgg cgttgctgcc
     1801 agctctgcgc ttcttgctga cgtgtcgcca accagctctc ttcttcatct tcctgtggca
     1861 atgtcagtgc ataacccgcc aatgccgtta agagctgctg ctggcgttgt tcaatttgct
     1921 gttgatactg gataatttgc tgattatgcg cggcaatctg cccttgtaat tcatgtcgtt
     1981 ggctgagtaa ccgcagctgg cgtttgtgct catcttgtgc atccagccac ggttgaatat
     2041 cgtcctgtgg ctgcaaggtg atattgaggc tggccgtgac ggcttgccat tgttgagtaa
     2101 gtgcttgctc atcttgtcgg aggctttgcg cttcgttttc atcgcgctga agctgcttcg
     2161 ttaatgcatc cagttgcccg cgcagcgccg caccttcttc gccgagcttt ttaacttcgt
     2221 tttccagcgc cagtaatcga gactgattaa caccaggctc cagcgcctga tacgccttga
     2281 ccgccgggtg gctggtggaa ccacaaagtg gacaaggctg acccgcctgt aactgtgcac
     2341 gctgggcttc cagcgttttg atgcgcgctt cctgctcgca aatggttttc acatcggcaa
     2401 gttgctgcgt cttttcttta taacgctggc gcatttcgtt aagtgcgaca ttacgttgcg
     2461 tctgttccag agatccattc tggatagtga ccattaactg cgccagacgt ttttgttggg
     2521 gaacaatctg cccatgcagc gcgaccaggc gctgacgcag tgggcgttgc tcagcatgtt
     2581 gcgccagggc ggtagcaact tcatcggcgg ttaacgtcaa cgtgatcgcc gcaagcgcat
     2641 taagtttttg ctcagcatgg gttaactgtt gctgccattg ccgcagatgc tcgcgatcgc
     2701 tggtttgttg ggagaactgc gcacgccaac ccgccagttc gttgttccac tgacggaagc
     2761 ggtcgtgttc ctgtaaccag gtattcaggc tttgttgctg ctgctgtaat tctgctgact
     2821 gcttcgccgc gtggtggcga atgctcgcgc gaagcgccat tgtgctctgt aagcgagtat
     2881 ttacttcttc aatctgctgg cgagtatgcg ccagcgccgc gctgtgttct gcgatgcgtt
     2941 cccagtgcgg acgaagattt cgtgccggtt gtgccagact gagcgccgcc agttgaggtt
     3001 gcgctttttc ttcttcggct aacgcctgtt gcaaggcctg ctgacggcgg ctggcttctt
     3061 gctgcaattc gtccagacgc gttaaccagt ttagtgattg ttgttcttgc tgctgcgcgg
     3121 taagtaactg tttttcttcg tcagtaagta cctgcaaact cgctgtcagc gattgcactt
     3181 gttccggcgt gagcaacgcg acgccgctgg cctgcgcttg cagcttctcc agctctgtgc
     3241 gggccgattt gtgctgctca aaaaccatcg ccgagatttg cccgtagatt tcagtgccgg
     3301 ttaactcctc gagcaattcc gcgcgttctt tgggtttggc attcaggaag gcagcaaatt
     3361 gcccctgcga aagcagcatc gaacgggtga agcgcccgta atccagcccg gttaacgtcg
     3421 ctgtcagttc cagcttatct ttcactttgt cggcgagaat tttgccgtcg gcgcagcgcg
     3481 ccagctctac gcgtggcacc tgcaaattac cgtcgggttg gttacgcgcc cgattctggc
     3541 tccagaatgc acggtacgct tcacctttca cttcaaactc cacctccgcc agacattcgg
     3601 cggtatcgcg ggtcatgaga tcattttgcg attgtgaaac gttagagaga cgcggagttt
     3661 cgtgatacag cgccagacaa atggcgtcca gcagggtggt tttccccgca ccggttgggc
     3721 cggtaatggc aaacagcccg ttgctggcga acggctcgcg ggtgaaatca atcttccatt
     3781 cgccttttaa tgagttcagg tttttcaggc gcaggctgag aattttcatg cttcgtgttc
     3841 tccggcgagg gtatgcaacg tcgtggtgaa aagatgctgc agacgttgct gctgcgattc
     3901 atccagttct tccagtgcca gacggcgatt gaacacctct tcgacgctga gttcgctgag
     3961 ggtttcacgc tgttggctgg ctaacacacg ctcgcgctgt tcacgactcc gacgtaccag
     4021 caatacttcg acaggcaatg attcggctaa tgcctggatt ttgcgctgaa tatcatgcag
     4081 atactcatca gtagtgattt cgatatccag ccagacaggt ggctcctgcg atacatcgcg
     4141 ccactgttcc agctgtgcgg taatcgacgc cagatcgcct ttcagcaccg ccatgggttg
     4201 agttaccggt acgttcaggt tttccacgct ctctaatttg ccgtttgaaa atgtcaccag
     4261 atggacatat ttactcttac cgcattcatc aaaactcagt ggaatggggg aaccgcaata
     4321 gcgaacatgt tccatgccgc caataatctg tgcgcggtga atatgcccga gcgcgatgta
     4381 gtcggctggt ggaaagtttt gtgccggaaa cgcgtccagc gtgccaatat aaatgtcacg
     4441 cacggcgtca cttttactgg cacccacggt cgttaaatgt cccgtggcga tgatgggcag
     4501 aggctgatcg ccgcgcagtt tgcaggcatc ggcatagtgt tgttggtaat aatcggtaat
     4561 cgctgccagt aaatgctgct gtttttcaat accgttaagc cccgcctggc tggaaataat
     4621 gtcacgcggg cgtaaaaacg gaatggggca cagcactgcg cctggcgtcc cgtcgcgacg
     4681 aggcaagatt tgcggcgcat gtccggcgct ggcgaccacg gttgtattga ggaacgccat
     4741 gatatcgcgc gattcattca gcgtggcgac cgagtcatgg tttcctgcca gtaccaccag
     4801 atgacagcca gtttgctgta aattgacaac aaaacggttg tataacgtgc gggcgtaact
     4861 gggcggcgag ccggtatcga aaacatcacc agcaacaata atcgcatcca cctgatgggt
     4921 ttgtgctgtc tccagcagcc agtcaagaaa agcctgatgt tcagcttcgc ggcttttact
     4981 gtagaagttc tggccgagat gccagtctga ggtgtgaagg atgcgcataa cggttccctg
     5041 gcgaaaaagc atggtcgcga ttatacccaa acagatgtgc catttgcttt tttctgcgcc
     5101 acggaaatca ataacctgaa gatatgtgcg acgagctttt cataaatctg tcataaatct
     5161 gacgcataat gacgtcgcat taatgatcgc aacctattta ttacaacagg gcaaatcatg
     5221 gcgagacgta ttctggtcgt agaagatgaa gctccaattc gcgaaatggt ctgcttcgtg
     5281 ctcgaacaaa atggctttca gccggtcgaa gcggaagatt atgacagtgc tgtgaatcaa
     5341 ctgaatgaac cctggccgga tttaattctc cttgactgga tgttacctgg cggctccggt
     5401 atccagttca tcaaacacct caagcgcgag tcgatgaccc gggatattcc agtggtgatg
     5461 ttgaccgcca gaggggaaga agaagatcgc gtgcgcggcc ttgaaaccgg cgcggatgac
     5521 tatatcacca agccgttttc gccgaaggag ctggtggcgc gaatcaaagc ggtaatgcgc
     5581 cgtatttcgc caatggcggt ggaagaggtg attgagatgc agggattaag tctcgacccg
     5641 acatctcacc gagtgatggc gggcgaagag ccgctggaga tggggccgac agaatttaaa
     5701 ctgctgcact tttttatgac gcatcctgag cgcgtgtaca gccgcgagca gctgttaaac
     5761 cacgtctggg gaactaacgt gtatgtggaa gaccgcacgg tcgatgtcca cattcgtcgc
     5821 ctgcgtaaag cactggagcc cggcgggcat gaccgcatgg tgcagaccgt gcgcggtaca
     5881 ggatatcgtt tttcaacccg cttttaacgc cttgctcatc ggacgcagag cagggcttat
     5941 gatttcttaa ctggagtatc ttacgtgctg gaacggctgt cgtggaaaag gctggtgctg
     6001 gagctgctac tttgttgcct cccggctttc atcctgggtg cattttttgg ttacctgccc
     6061 tggtttttgc tggcatcggt aacaggactg cttatctggc atttctggaa tttattgcgc
     6121 ctttcatggt ggttgtgggt ggatcgcagt atgaccccgc caccggggcg tggtagctgg
     6181 gaaccgctac tatacggctt acaccagatg cagctgcgaa ataaaaaacg ccgccgtgaa
     6241 ctgggcaatc tgattaaacg ctttcgtagc ggcgcggagt cgctgcctga cgcggtggtg
     6301 ctgaccacgg aagagggcgg tattttctgg tgtaacggtc tggcgcaaca aattcttggt
     6361 ttgcgctggc cggaagataa cgggcagaac atccttaacc tactgcgtta cccggagttt
     6421 acgcaatatc tgaaaacgcg tgatttttct cgcccgctca atctggtgct caacaccggg
     6481 cggcatctgg aaattcgcgt catgccttat acccacaaac agttgctgat ggtggcgcgt
     6541 gatgtcacgc aaatgcatca actggaaggg gcgcggcgta acttttttgc caacgtgagc
     6601 catgagttac gtacgccatt gaccgtgtta cagggttacc tggagatgat ggatgagcag
     6661 ccgctggaag gcgcggtacg cgaaaaagcg ttgcacacca tgcgcgagca gacccagcgg
     6721 atggaagggc tggtgaagca gttgctaacg ctgtcgaaaa ttgaagccgc gccgacgcaa
     6781 ttgctcaatg aaaaggttga tgtgccgatg atgctgcgcg ttgttgagcg cgaggctcag
     6841 actctgagtc agaaaaaaca gacatttacc tttgagatag ataacggcct caaagtgtct
     6901 ggcaacgaag atcagctacg cagtgcgatt tcgaacctgg tctataacgc cgtgaatcat
     6961 actccagaag gcacgcatat caccgtacgc tggcagcgag tgccgcacgg tgccgaattt
     7021 agcgttgaag ataacggacc gggcattgca ccggagcata ttccgcgcct gaccgagcgt
     7081 ttttatcgcg ttgataaagc gcgttcccgg caaaccggcg gtagcggatt agggttagcg
     7141 atcgtgaaac atgctgtgaa tcatcacgaa agtcgcctga atattgagag tacagtagga
     7201 aaaggaacac gtttcagttt tgttatcccg gaacgtttaa ttgccaaaaa cagcgattaa
     7261 tccgcctttg tcatctttta ttgccataag ccagtcgatg ctggcttatt ttctttgcag
     7321 tcaaaatacg ggcgttagat tttacaacgg ttggtgattt tttgttcgca tgattagcca
     7381 tgtctttttc acggaaatag tgttttatac tggttggtga tttcttatcg ctatatacct
     7441 ctggttttta gatccctcct tgctttaaaa cgttataagc gtttaaattg cgcttcaggt
     7501 gctgtcatac tgactgcatt aacgcggtaa atcgaaaaac tattcttcgc cgcgccaggt
     7561 tgggagtatt tcccgctaaa attgtttaaa tataccgctg tatcatcccc agggattggc
     7621 acaaaaattt aacgttacaa caccacatcc acaggcagta tgatttatga cccatcaatt
     7681 aagatcgcgc gatatcatcg ctctgggctt tatgacattt gcgttgttcg tcggcgcagg
     7741 taacattatt ttccctccaa tggtcggctt gcaggcaggc gaacacgtct ggactgcggc
     7801 attcggcttc ctcattactg ccgttggcct gccggtatta acggtagtgg cgctggcaaa
     7861 agttggcggc ggtgttgaca gcctcagcac gccaatcggt aaagtcgctg gcgtgctgct
     7921 ggcaacggtt tgttacttgg cggtggggcc gcttttcgct acgccgcgta cagctaccgt
     7981 ttcctttgaa gtggggattg cgccgctgac gggtgattcc gcgctgccgc tgtttatcta
     8041 cagcctggtc tatttcgcta tcgttattct ggtttcgctc tatccgggca agctgctgga
     8101 taccgtgggc aacttccttg cgccgctgaa aattatcgcg ctggtcatcc tgtctgttgc
     8161 cgctattgtc tggccggcgg gttctatcag cacggcgact gaggcttatc aaaacgctgc
     8221 gttttctaac ggcttcgtta acggctatct gaccatggat acgctgggcg caatggtgtt
     8281 tggtatcgtt attgttaacg cggcgcgttc tcgtggcgtt accgaagcgc gtctgctgac
     8341 ccgttatacc gtctgggctg gcctgatggc gggtgttggt ctgactctgc tgtacctggc
     8401 gctgttccgt ctgggttcag acagcgcgtc gctggtcgat cagtctgcaa acggcgctgc
     8461 tattctgcat gcttacgttc agcacacatt tggcggcggc ggtagcttcc tgctggcggc
     8521 gttaatcttc atcgcctgcc tggtaacggc agttggcctg acctgtgctt gtgcagaatt
     8581 ctttgcccag tacgtaccgc tctcttatcg tacgctggtg tttatcctcg gcggcttctc
     8641 gatggtggtg tctaacctcg gcttaagcca gctgatccag atctccgtac cggtgctgac
     8701 cgctatttat ccgccgtgta tcgcactggt tgtattaagt tttacacgct catggtggca
     8761 taattcgtcc cgcgtgattg ccccgccgat gtttatcagc ctgctttttg gtattctcga
     8821 cgggatcaaa gcatctgcat tcagcgatat cttaccgtcc tgggcgcagc gtttaccgct
     8881 ggccgaacaa ggcctggcgt ggttaatgcc aacagtggtg atggtggttc tggccattat
     8941 ctgggatcgc gcggcaggtc gtcaggtgac ctccagcgct cactaaatca ctgaacattt
     9001 gttttaacca cggggctgcg atgccccgtg gttttttatt gtgttgatgg gttaggaatt
     9061 gatggaaagt aagaacaagc taaagcgtgg gctaagtacc cgccacatac gctttatggc
     9121 actgggttca gcaattggca ccgggctgtt ttacggttcg gcagacgcca tcaaaatggc
     9181 cggtccgagc gtgttgttgg cctatattat cggtggtatc gcggcgtata tcattatgcg
     9241 tgcgctgggg gaaatgtcgg tacataaccc ggccgccagc tctttctcgc gttatgcgca
     9301 ggaaaacctc ggcccgctgg caggttacat taccggctgg acctactgct ttgaaatcct
     9361 aattgtcgcc atcgccgatg tgaccgcttt tggtatctat atgggtgtct ggttcccgac
     9421 ggtgccgcac tggatttggg tactgagcgt ggtgctgatc atttgcgccg taaacctgat
     9481 gagcgtgaag gtattcggtg agctggaatt ctggttctcg ttctttaaag tcgccaccat
     9541 catcatcatg attgtcgccg gtttcggcat catcatctgg gggattggca acggcgggca
     9601 accgaccggt attcataacc tgtggagcaa cggcggcttc ttcagtaacg gctggcttgg
     9661 catggtaatg tcgttgcaaa tggtgatgtt tgcttacggt gggatcgaaa ttatcgggat
     9721 taccgccggt gaagcgaaag atcctgagaa atcgattccg cgtgcgatta actccgtgcc
     9781 gatgcgtatt ctggtgttct acgtcggtac gctgttcgtc attatgtcta tctacccgtg
     9841 gaatcaggtt ggcactgccg gtagcccgtt cgtgctgacg ttccagcata tgggcattac
     9901 ctttgccgcc agcattctta actttgttgt gctgaccgct tcgctgtcgg caattaacag
     9961 tgacgtattt ggcgtaggcc gtatgctcca cggtatggca gagcagggca gcgcaccgaa
    10021 aattttcagc aaaacgtcgc gtcgcggtat tccgtgggtt acggtgctgg tgatgactac
    10081 cgcgctgctg tttgcggtgt atctgaacta catcatgccg gaaaacgtct tcctggtgat
    10141 cgcttcgctg gcaaccttcg ccacggtatg ggtgtggatt atgatcctgc tgtcgcaaat
    10201 cgccttccgt cgccgtttgc cgccagaaga agttaaggcg ctgaaattta aagtgccggg
    10261 tggggtagca acgaccatcg gcgggctgat tttcctgctc tttattatcg ggttgattgg
    10321 ttatcacccg gatacgcgta tctcgctgta tgtcggtttc gcgtggattg ttgtgctgtt
    10381 gattggctgg atgtttaagc gtcgccacga tcgtcagctg gctgaaaacc agtaatcctt
    10441 gcgttctgta agccggttca ggaggaaatc ctgatccggc tattccgaaa gttatccgcc
    10501 cccgtcctcc tcccccaaat atccttcaga tgatgagtga tcctgcatta ggctatggca
    10561 aggtgatcag attttcatca caggggaatt atgatgttaa atgcatggca cctgccggtg
    10621 cccccatttg ttaaacaaag caaagatcaa ctgctcatta cactgtggct gacgggcgaa
    10681 gacccaccgc agcgcattat gctgcgtaca gaacacgata acgaagaaat gtcagtacca
    10741 atgcataagc agcgcagtca gccgcagcca ggcgtcaccg cagggcttca gccgaatgcc
    10801 gccggcacga ctggagcagt ttgccgtcga tgtaccggat atcggcccac aatgggctgc
    10861 ggatcagatt ttttatcaga tcttccctga tcgttttgcg cgtagtcttc ctcgtgaagc
    10921 tgaacaggat catgtctatt accatcatgc agccggacaa gagatcatct tgcgtgactg
    10981 ggatgaaccg gtcacggcgc aggcgggcgg atcaacgttc tatggcggcg atctggacgg
    11041 gataagcgaa aaactgccgt atctgaaaaa gcttggcgtg acagcgctgt atctcaatcc
    11101 ggtgtttaaa gctcccagcg tacatcaata cgataccgag gattatcgcc atgtcgatcc
    11161 gcagtttggc ggtgatgggg cgttgctgcg tttgcgacac aatacgcagc agctgggaat
    11221 gcggctggtg ctggacggcg tgtttaacca cagtggcgat tcccatgcct ggtttgacag
    11281 gcacaatcgt ggcacggggg gagcttgtta caaccctgaa tcgccctggc gcgactggta
    11341 ctcgtttagt gatgatggca cggcgctcga ctggcttggc tatgccagct tgccgaagct
    11401 ggattatcag tcggaaagtc tggtgaatga aatttatcgc ggggaagaca gtattgtccg
    11461 ccattggctg acagcgccgt ggagtatgga cggctggcgg ctggatgtgg tgcatatgct
    11521 gggggaggcg ggtggggcgc gcaataatat gcagcacgtt gctgggatca ccgaagcggc
    11581 gaaagaaacc cagccggaag cgtatattgt cggcgaacat tttggcgatg cacggcaatg
    11641 gttacaggcc gatgtggaag atgccgccat gaactatcgt ggcttcacat tcccgttgtg
    11701 gggatttctt gccaataccg atatctctta cgatccgcag caaattgatg cccaaacctg
    11761 tatggcctgg atggataatt accgcgcagg gctttctcat caacaacaat tacgtatgtt
    11821 taatcagctc gacagccacg atactgcgcg atttaaaacg ctgctcggtc gggatattgc
    11881 gcgcctgccg ctggcggtgg tctggctgtt cacctggcct ggtgtaccgt gcatttatta
    11941 cggtgatgaa gtgggactgg atggtaaaaa cgatccgttt tgccgtaaac cgttcccctg
    12001 gcaggtggaa aagcaggata cggcgttatt cgcgctgtac cggcgaatga ttgtgctgcg
    12061 taagaaaagt caggcgctgc gtcgtggcgg ctgtcaggtg ctgtatgcgg aagataacgt
    12121 agtggtattt gtccgcgtgc tgaatcagca acgtgtactg gtggcaatca accgtggcga
    12181 ggcctgtgaa gtggtgctac ccgcgtcacc gtttctcaat gccgtgcaat ggcaatgcaa
    12241 agaagggcat gggcaactga ctgacgggat tctggctttg cctgccattt cggctacggt
    12301 atggatgaac taacgtttta taacgccttg tgtgacgcct gcgccatcat ccgcggataa
    12361 aactgccaga agcgggttcc gagggcggta taatgggcgt ttaaatcgta ccaggagtca
    12421 cgcagggcat ccagacgtgg gcgacggctt gccatgccgt ttaacacgtt ctggatgaaa
    12481 tccatatcgc gatagcgcac cagccactgc tctgaccaca agtaattgtt tagattgata
    12541 aaacgtggcg gtgagtccgg caaaatcgtc atcacttgct tgcgggcata acagataaat
    12601 tcctgtagcg gaaagtccgg cgacagctgc gaccagtggc gggaaagaaa gtgatcccac
    12661 atgacatcca gcgtaatagg cgcaacgcgg cgcgtttcac gacgaaacca ctcccgtgct
    12721 tcgcggactt ccggcagatt gtcagtcaat acgtcgatac gtcgatacat atgaatgcca
    12781 gccacgacgt cgggcggaaa actttcttca ggatttccgc gtacgaaatc agccagtaaa
    12841 ttgccggaaa gcgagctttc cgcgagatgg gctaaatgca ggtgagctaa aaaattcatc
    12901 gattatattc tatccaaagg ggggtaaagg ttgcagggag agcgccccgg cactagacta
    12961 cccgcctctt attttagtct gagtcagtgt catgcgcgtt accgatttct tctttgaatt
    13021 gcccgaatcc ctgattgccc actaccccat gcctgaacgc agtagctgtc gtttactgtc
    13081 gctggacggg cctacgggcg cgctgacgca cggtactttc accgatttac tcgataagct
    13141 caaccccggc gatcttctgg tttttaataa tactcgcgtg atcccggcgc gcctgtttgg
    13201 gcgtaaagcc agcggcggca agattgaagt gctggttgag cggatgctcg acgacaaacg
    13261 cattcttgcg catattcgcg cctcgaaagc gccaaaacct ggcgcagaac tgctgctggg
    13321 cgatgacgaa agtattaacg caacaatgac cgcgcgccac ggcgcactgt ttgaagtcga
    13381 attcaatgat gatcgttcgg tactggatat cctcaacagt atcgggcata tgccgctgcc
    13441 gccgtatatc gaccgtccgg acgaagacgc tgaccgcgaa ctttatcaaa ccgtttatag
    13501 cgaaaaaccg ggcgcggttg cagccccgac cgctggtctg cattttgacg agcctttgct
    13561 ggaaaaattg cgcgccaaag gcgtggagat ggcgtttgtg acgttgcacg ttggtgcggg
    13621 caccttccag ccggtgcgcg tcgacaccat tgaagatcac atcatgcact cggaatacgc
    13681 tgaagtaccg caggatgtgg tagacgcggt actggcggcg aaagcgcgcg gtaaccgggt
    13741 gattgcggtt ggcaccactt cagtacgttc gctggaaagc gcggctcagg cagcgaaaaa
    13801 cgatctcatt gaaccgttct tcgacgatac ccaaatcttt atctatccgg gcttccagta
    13861 caaagtggtc gatgcgctgg tgacgaactt ccacttgcca gagtcgacgc tgattatgct
    13921 ggtttcggcc tttgccggtt atcaacacac catgaacgcc tataaagcag cggtagaaga
    13981 gaaatatcgc ttttttagtt acggtgatgc gatgtttatt acgtacaatc cgcaggcaat
    14041 taatgagcgc gtcggggagt aattccgcgg cgctggttta aaacgttgga ctgtttttct
    14101 gacgtagtgg agaaaaaatg aaatttgaac tggacaccac cgacggtcgc gcacgccgtg
    14161 gccgcctggt ctttgatcgt ggcgtagtgg aaacgccttg ttttatgcct gttggcacct
    14221 acggcaccgt aaaagggatg acgccggaag aagttgaagc cactggcgcg caaattatcc
    14281 tcggcaacac cttccacctg tggctgcgcc cgggccagga aatcatgaaa ctgcacggcg
    14341 atctgcacga ttttatgcag tggaaggggc cgatcctcac cgactccggg ggcttccagg
    14401 tcttcagcct tggcgatatt cgtaaaatca ccgaacaggg cgtgcacttc cgtaacccga
    14461 tcaacggcga tccaattttc ctcgatcctg aaaaatcaat ggagattcag tacgatcttg
    14521 gttcggatat cgtcatgatc tttgatgagt gtacgccgta tcctgctgac tgggattacg
    14581 caaaacgctc catggagatg tctctgcgtt gggcgaagcg tagccgtgag cgttttgaca
    14641 gtctcggaaa caaaaatgcg ctgtttggta tcattcaggg cagcgtttac gaagatttac
    14701 gtgatatttc tgttaaaggt ctggtagata tcggttttga tggctacgct gtcggcggtc
    14761 tggctgtggg tgagccgaaa gcagatatgc accgcattct ggagcatgta tgcccgcaaa
    14821 ttccggcaga caaaccgcgt tacctgatgg gcgttggtaa accagaagac ctggttgaag
    14881 gcgtacgtcg tggtatcgat atgtttgact gcgtaatgcc aacccgcaac gcccgaaatg
    14941 gtcatttgtt cgtgaccgat ggcgtggtga aaatccgcaa tgcgaagtat aagagcgata
    15001 ctggcccact cgatcctgag tgtgattgct acacctgtcg caattattca cgcgcttact
    15061 tgcatcatct tgaccgttgc aacgaaatat taggcgcgcg actcaacacc attcataacc
    15121 ttcgttacta ccagcgtttg atggcgggtt tacgcaaggc tattgaagag ggtaaattag
    15181 agagcttcgt aactgatttt taccagcgtc aggggcgaga agtaccacct ttgaacgttg
    15241 attaatatta ataatgaggg aaatttaatg agctttttta tttctgatgc ggtagcggca
    15301 acgggtgcac cggcgcaagg tagcccgatg tctttgattt tgatgctggt ggtattcggt
    15361 ctgattttct atttcatgat cctgcgtcca cagcagaagc gcaccaaaga acacaaaaag
    15421 ctgatggact ccattgccaa aggtgatgaa gttctgacga acggtggcct ggttggtcgc
    15481 gtaaccaaag tagcggaaaa cggctacatt gctatcgcgc tgaatgacac cactgaagta
    15541 gttattaaac gtgacttcgt agctgccgtc ctgccgaaag gcaccatgaa ggcgctgtaa
    15601 ttaaaatttt tccctaaggg aattgccgtg ttaaaccgtt atcctttgtg gaagtacgtc
    15661 atgctgatcg tggtgattgt catcggtctg ctgtatgcgc ttcccaacct gtttggtgag
    15721 gatccggctg ttcagatcac tggtgcgcgc ggagtcgccg ccagtgagca aacgctgatc
    15781 caggtccaga aaacgttaca agaagaaaaa ataactgcta agtctgtggc actggaagag
    15841 ggcgctattc ttgcgcgctt cgactccact gacacccagc tgcgcgctcg tgaagcatta
    15901 atgggcgtta tgggtgacaa atacgtcgtg gcgcttaacc ttgccccggc aacgccgcgc
    15961 tggctggcag ctattcacgc tgagccgatg aagctcggcc ttgacctgcg tggcggcgtt
    16021 cacttcctga tggaagtgga tatggacacc gcgcttggca aactccagga acaaaatatc
    16081 gatagcctgc gcagcgatct gcgtgaaaag ggcatcccgt ataccaccgt tcgtaaagaa
    16141 aacaactacg gcctgagcat tactttccgc gatgctaaag ctcgtgatga agccattgcg
    16201 tatctgagca agcgccatcc ggacctggtg attagtagcc agggcagcaa ccagctgcgt
    16261 gcggtaatga gcgatgctcg tctgagtgaa gcgcgtgaat atgcggtgca gcagaacatc
    16321 aatatcctgc gtaaccgtgt aaaccaactt ggcgtagcgg agccggtggt tcagcgtcag
    16381 ggtgctgacc gtatcgttgt tgaactgcca ggtattcagg acactgcgcg tgcgaaagag
    16441 attctgggtg cgacggcaac gctggaattc cgtctggtaa acaccaacgt tgaccaggcc
    16501 gctgcggcat ccggtcgcgt accgggcgac tctgaagtga aacagacccg cgaaggtcag
    16561 ccagttgtgc tgtacaaacg cgtaattctg accggtgacc atatcaccga ctccacttcc
    16621 agccaggacg aatacaacca accgcaggtt aacatctcgc tcgatagcgc tggtggtaac
    16681 atcatgtcta acttcactaa ggacaacatc ggcaaaccga tggcaaccct gtttgtggag
    16741 tacaaagaca gcggtaagaa agatgcaaat ggtcgtgcgg ttctggtgaa acaggaagag
    16801 gtgattaaca tcgccaacat ccagtctcgt ctgggtaaca gcttccgtat caccggcatc
    16861 aacaacccga acgaagcccg tcagctgtca ctgctgctgc gtgccggtgc gttgatcgcg
    16921 ccgattcaga ttgttgaaga acgtaccatt ggcccaaccc tgggtatgca gaacattgaa
    16981 caggggctgg aggcttgcct tgccggtctg ctggtttcta ttctgttcat gatcatcttc
    17041 tataagaagt ttggtctgat tgcgaccagt gctctgattg ccaacttgat cttaatcgtc
    17101 ggcattatgt cgctgttgcc aggcgcaacg ctgagtatgc caggtatcgc gggtatcgtc
    17161 ttaacccttg cggtggcggt cgatgcgaac gtactgatca acgaacgtat taaagaagag
    17221 ttgagcaacg gacgtactgt tcaacaggca attgatgaag gttatcgtgg cgcattcagt
    17281 tctatcttcg atgcgaacat caccacgctg attaaagtca tcatcctgta cgcagtgggt
    17341 accggggcaa ttaaagggtt cgcgattact accggtatcg gtgtggcgac gtcgatgttt
    17401 accgcgattg tcggtacgcg tgccatcgta aacctgctat atggcggcaa gcgcgtcaag
    17461 aagctgtcaa tctgaggagt gcgatgtggc acaggaatat actgttgaac aactaaacca
    17521 cggccgtaaa gtctatgact ttatgcgctg ggactactgg gctttcggca tctctggtct
    17581 gctgttaatc gccgctatcg ttattatggg cgtgcgcggc tttaactggg ggctggattt
    17641 caccggtggt acggttatcg aaattacgct cgaaaaaccg gctgaaattg acgtaatgcg
    17701 tgatgcattg caaaaagccg gttttgaaga gccaatgctg caaaactttg gtagcagcca
    17761 cgacatcatg gtccgtatgc cgcctgctga aggcgaaacc ggcggtcagg tgctgggcag
    17821 ccaggttctg aaggtgatta acgaatccac caatcagaat gcagcagtga agcgtattga
    17881 gttcgtcggt ccgagcgtgg gggcagacct tacgcaaacc ggtgcgatgg cgttgatggc
    17941 ggcgctgctg tctatccttg tgtacgtagg ttttcgcttt gagtggcgac tggcggcagg
    18001 ggttgttatt gcgctggcgc acgacgttat cattacgctg ggtattttgt cgttattcca
    18061 tatcgagatt gacctgacca ttgtggcatc gttgatgtcg gttatcggtt actcgcttaa
    18121 cgacagtatc gtggtatcgg accgtattcg tgaaaacttc cgcaagatcc gtcgcggtac
    18181 gccttacgaa atctttaacg tgtccttgac ccagacgctg caccgtacct tgatcacatc
    18241 cggtactacc ttgatggtta tcctgatgct gtacctcttc ggtggtccgg tactggaagg
    18301 cttctcgctg accatgctta tcggtgtttc tatcggtact gcatcttcca tctatgtggc
    18361 atctgcgttg gctctgaaac tgggtatgaa gcgcgaacac atgttgcagc agaaagtgga
    18421 aaaagaaggg gcggatcagc cgtcaattct gccgtaatca agttcccgtt gatgttgaaa
    18481 atcccggtca gaagatcggg attttttttg atgtatggag attgcgaaaa tccccgcatc
    18541 ttgggaaact gcgcgtaacc ctacatttca tccaggtaac tcttcatggc tatcatccca
    18601 aaaaactatg cgcggttaga aagcggctat cgcgaaaaag cattaaaaat atatccgtgg
    18661 gtctgcggtc gctgttcccg cgagtttgtt tattccaacc tgcgtgaact taccgttcac
    18721 cacattgatc acgaccatac caataacccg gaagatggca gtaactggga attgctttgt
    18781 ctctattgcc acgatcatga gcattcgaaa tataccgaag cggatcagta tggtacgacc
    18841 gttatcgcag gggaagatgc gcagaaagat gtcggtgaag cgaagtacaa cccattcgct
    18901 gacctgaaag cgatgatgaa caagaagaag tgattaaaac gtaaaattgc ctgatgcgct
    18961 acgcttatca ggcctacgtt atttcagcaa tatattgaat ttacgtgctt ttgtgggccg
    19021 gacaaagcgt ttacgccgca tccggcatga acaaagctca cgttgttaac aatcagaaat
    19081 gccgggaata aatcccggca ttttcataat cagaagttgt aacctactac caggtaacca
    19141 ccccagccgg tagagcgaac gttgaagttg ccgttgccga agttcagttc tgcatcgtcg
    19201 ttccactgac caccgtcgtg ccagtaacga gctacgacag agtagtgcca gtgatcgtag
    19261 ttcagagcca gaatatggct ggaagcgata gagttattag tacgggtctt aataccgttg
    19321 attgcgttac cgctgtcatc ccctaaatcg gaaccccagt cgaagttggt gaagccgatg
    19381 tagctcagct gaccgcccca cagatcggta atcggcacaa agtatttaat tttgaaacgg
    19441 taaccgtccc actcgttttc gttcgctgcg ccatagttct gccactggta tttcgcatag
    19501 acgttcatgg acaggctcat cggcagacca gtatcgatgt cggtacccag acccatgtac
    19561 caggtgctct ggcgaccatt tttattacga cccatgtcgt aaatgtagtt gttcgcgaag
    19621 taccactctt tgaacggacc gaagttaagg tcagtattgg tcagcttgtc gatggagaaa
    19681 cgtggttcga tttccataaa cagcggagaa ccgtggttcc agataccttt agcatcggag
    19741 ttaccgccga agaataccgg cgcatccgca taaccataga agtcgaacca gtctttttta
    19801 gcgaatgctt cgtactcaag gtaggtatcg ttgcggatct gcggtccgaa acgggtgtga
    19861 tagcttccga caacgttaac gctctggtgc caccagtcgg aaagatactg cggtttgtcg
    19921 ttttcagctg cgttgacagt aaaagacgaa gagagcgcca gtaccgcacc ggctgccagt
    19981 aatgtttttt tcatatgtat gccactgttt gaaaatccct tgcgggagtg aaaaaggcgc
    20041 aaattgcgtt tctaaatatt tcgtatacag aggagcctat tataaaaatc attgctcaca
    20101 aaaatatgtt tcgtttcaca gttctatcat ttacgtaatc gattgcgttc acgtttacac
    20161 acattcgggc ggggattgta ctgactttcg cccttgttgc aaacttttac tatcaatcca
    20221 ggtgatgtaa gcagagtaac aaaatgacgg ggaaagatgt tgcgggacgc acaaaatcgt
    20281 cccgaaatac gtttactgca taacaggttg aatgtcgtgg atacgtacaa agcctaactg
    20341 atccacagaa atccccttta attgtaacgg aatatcaaca tcgctggggg cgaggacgct
    20401 ggcaggggca ttaatcaatt gattctgcac attgatttcc tgaaagttgt ctattgttcc
    20461 ctgaatttgc ccatattcaa cagttccgct gaatgcgggc aagggatcat tcgactcacc
    20521 ctgaatacgt agtgtaaggg gggtgccatc tgtatcaggc gtaatattca ccagcgacat
    20581 acgtaaagta ccgatctggc tttccagtct tgccggtgtt ttcgctccag gcagaaggta
    20641 acccccactg ctggattttg cattcagcct gttttgctga gtgattttga ctgtttcttg
    20701 attgagttgc gtcatctcct ggttcagcgt gctgacgctg tgtttcatct gtcgcacttc
    20761 actttgctgc acacaggcgc taaggctgaa caggcttccc agcaggagca gtcgaaaaac
    20821 gttagtattc ataggtcgtc cctttctcgt cgcaattagc ctaatggtag agggtaaaag
    20881 cagcgaaagc atcgatcctt tatctcaaaa gcgttgcgcc tttgttgtat cgtcagttca
    20941 gggtaaaata gatttccgtt aaccacctgg tcaggacgcc gtatgcattg cccattctgt
    21001 ttcgccgtgg acactaaggt aattgactct cgtctcgtgg gcgagggttc atccgtacgc
    21061 cgccgtcggc agtgtctggt gtgtaatgaa cgtttcacca cctttgaagt ggcggagctg
    21121 gttatgccgc gtgttgtaaa aagcaacgac gtgcgtgaac cgtttaatga agagaaattg
    21181 cgtagcggaa tgctgcgggc gctggaaaaa cgtccggtga gttccgatga cgttgaaatg
    21241 gcaatcaatc atattaaatc gcagctgcgc gccaccggtg agcgcgaagt accgagcaag
    21301 atgattggca atctggtgat ggagcaattg aaaaagctcg ataaagtcgc ctatatccgt
    21361 tttgcctctg tctaccgcag tttcgaagat atcaaagaat ttggcgaaga gatcgcgcgc
    21421 ctggaggact aagccgtgca ggacgagtat tacatggcgc gggcgctaaa gctggcgcaa
    21481 cgaggacgtt ttaccaccca ccccaaccca aatgtcgggt gcgtcattgt caaagatggc
    21541 gaaattgtcg gtgaaggtta ccatcaacga gcgggtgaac cacatgccga agtacacgcg
    21601 ttgcgtatgg cgggtgaaaa agccaaaggt gcaacggcgt atgtgacact cgaaccttgc
    21661 agccatcacg gccgtacgcc gccttgctgt gatgctttaa ttgccgcagg tgtggcgcgc
    21721 gtggttgcct cgatgcaaga tcctaacccg caggtcgctg ggcgtggact ttaccgtctg
    21781 caacaggctg gcattgacgt cagccacggc ctgatgatga gtgaagccga gcaattgaat
    21841 aaaggctttc tcaagcggat gcgcaccggc tttccttata ttcagttaaa acttggcgca
    21901 tcgcttgatg gtcgcacggc gatggcgagc ggcgaaagcc agtggatcac ttcgccccag
    21961 gcgcggcgtg atgtacaacg actgcgcgcg caaagtcatg ccattttaac cagcagcgcc
    22021 acggtgctgg cggatgatcc tgccttaacg gtgcgttggt ccgaactgga tgaacaaact
    22081 caggcgctct acccgcaaca aaatctccgc cagccggtac gtattgtgat tgatagccaa
    22141 aatcgcgtga cgccggaaca tcacattgtg cagcagcccg gcgaaacctg gttcgcgcgt
    22201 acgcaggaag attctcgtga gtggccggaa acggtgcgta ccttgctgat tccagagcat
    22261 aaaggtcatc tggatctggt tgtactgatg atgcaactgg gtaaacagca gattaacagc
    22321 atctgggggg aagcggggcc aacgctcgct ggcgcattgc tgcaggcggg tttagtcgat
    22381 gagctgattg tctatatcgc acctaaacta ttaggcagcg acgcccgtgg attatgcacc
    22441 ctgccagggc ttgagaaatt agccgacgcc ccccaattta aattcaaaga gatacgtcat
    22501 gtaggcccgg atgtttgcct gcatttagtg ggtgcatgat ctcccggctc gaaagggaag
    22561 cagcgcacga aatattatgc taaaatccgc ccccctgcgg ggccatactc gaacccgaag
    22621 gaagaaaatg aacattattg aagctaacgt tgctaccccg gacgctcgcg tcgccatcac
    22681 catcgcgcgt ttcaacaact ttatcaatga cagcctgctg gaaggtgcaa ttgacgcact
    22741 gaaacgtatc ggtcaggtaa aagatgaaaa cattaccgtt gtttgggtgc ctggtgccta
    22801 tgagctgccg ctggcggcgg gtgcactggc taaaaccggt aaatacgacg cggtgattgc
    22861 gctgggtacg gttattcgtg gtggcactgc ccattttgaa tatgtcgctg gtggtgcaag
    22921 caacggcctg gcgcatgttg cccaggacag cgaaattccg gttgcttttg gggttctgac
    22981 cactgaaagc attgaacaag cgatcgaacg tgctggcacc aaagctggca acaaaggtgc
    23041 agaagctgca ctgaccgcgc ttgaaatgat taatgtattg aaagccatca aggcctgaaa
    23101 ttagtaaggg gaaatccgtg aaacctgctg ctcgtcgccg cgctcgtgag tgtgccgtcc
    23161 aggcgctcta ctcctggcag ttgtcccaga acgacatcgc tgatgttgaa taccagttcc
    23221 tggctgaaca ggatgtaaaa gacgttgacg tcctgtactt ccgtgagctg ctggccgggg
    23281 tggcgactaa taccgcatac ctcgacggac tgatgaagcc atacctgtcc cgtctgctgg
    23341 aagaactggg acaggtagaa aaagcagtac tgcgcattgc gctgtacgaa ctgtctaaac
    23401 gtagcgatgt gccatacaaa gtggccatta acgaagcgat cgaactggcg aaatcgttcg
    23461 gcgcagaaga cagccataag ttcgtcaacg gtgtactcga taaagcagca cctgtgattc
    23521 gccctaacaa aaagtaatat ccaggccggt agattcacgg aagaccgttc catgatcgcc
    23581 ggccttttct tttttacctg ctgaggcata acgtatggca tgtggcgagt tctccctgat
    23641 tgcccgttat tttgaccgtg taagaagttc tcgtcttgat gtcgaactgg gcatcggcga
    23701 cgattgcgca cttctcaata tccccgagaa acagaccctg gcgatcagca ctgatacgct
    23761 ggtggcgggc aaccacttcc tccctgatat cgatcctgct gatctggcgt ataaagcact
    23821 ggcggtgaac ctaagcgatc tggcagcgat gggggccgat ccggcctggc tgacgctggc
    23881 attaaccttg ccggacgtag acgaagcgtg gcttgagtcc ttcagcgaca gtttgtttga
    23941 tcttctcaat tattacgata tgcaactcat tggcggcgat accacgcgtg ggccattatc
    24001 aatgacgttg ggtatccacg gctttgttcc gatgggacga gccttaacgc gctctggggc
    24061 gaaaccgggt gactggatct atgtgaccgg tacaccgggc gatagcgccg ccgggctggc
    24121 gattttgcaa aaccgtttgc aggttgccga tgctaaagat gcggactact tgatcaaacg
    24181 tcatctccgt ccatcgccgc gtattttaca ggggcaggca ctgcgcgatc tggcaaattc
    24241 agctatcgat ctctctgacg gtctgatttc cgatctcggg catatcgtga aagccagcga
    24301 ctgcggcgta cgtattgacc tggcattgct gccgttttct gatgcgcttt ctcgccatgt
    24361 tgaaccggaa caggcgctgc gctgggcgct ctctggcggt gaagattacg agttgtgttt
    24421 cacggtgccg gaactgaacc gtggagcgct ggatgtggct ctcggacacc tgggcgtacc
    24481 gtttacctgt atcgggcaaa tgaccgccga tatcgaaggg ctttgtttta ttcgtgacgg
    24541 tgaacctgtt acgttagact ggaaaggata tgaccatttt gccacgccat aaagatgtcg
    24601 cgaaaagtcg cctgaagatg agtaatccgt ggcatctact tgctgtcgga ttcggaagtg
    24661 gattaagccc gatcgttcct gggacgatgg gctcgctggc agcgattccg ttctggtatc
    24721 tgatgacctt tttgccctgg cagctctact cgctggtggt gatgctgggg atctgtatcg
    24781 gcgtctatct ttgtcatcag accgcaaaag atatgggcgt gcacgatcac ggcagcattg
    24841 tctgggacga atttattggt atgtggatca cgctcatggc gctgccgacc aatgactggc
    24901 agtgggttgc cgccgggttt gtgattttcc gtattctgga tatgtggaaa ccgtggccga
    24961 tccgctggtt tgatcgcaat gtgcatggcg gcatggggat catgatagat gatattgtcg
    25021 ccggggtgat ctccgctggc atcctgtact ttattggtca tcactggccg ctgggcattc
    25081 tgtcgtagtt gtgcaccgat gcctgatgtg acgcttgttg cgtctcatca ggcctggact
    25141 cttatttaaa tcctactacc ggatgcggtt tatacggcgt ttccagttcg gcaatctgtt
    25201 ccggcttcaa agtgatatcc accgcgttca atagctcatc aagctgttct tcccgcgatg
    25261 taccgataat cggtgcggca atgcccggtt tactcaacaa ccaagccagc gcaacttgtg
    25321 ctcgtgttgc accgagttct tcactgacgc ccgttaaccg ctctgcgatc tgcgcgtcat
    25381 tttcatcgct ttctttatag agatttttcc ccacctcatc agacaccagt cgtgcggtag
    25441 tttctcccca cggacgcgtc agtcgccccc gcgccagcgg gctccacgga atcaccgcca
    25501 cgccctcctg ataaaacagt ggcagcatct cgcgctcttc ttcgcgataa atcagattgt
    25561 agtgatcctg catactgaca aactgcgccc agccgtgctg tttttggagt tccagtgcct
    25621 gagcaaactg cgaagcgtgc attgatgacg cgccgatata acgcgctttc ccggctttta
    25681 ccacgtcgtt cagggcttcc agcgtctctt cgatcggcgt gttgtaatcc cagcgatgaa
    25741 tttgcaggat atcgacataa tccatgccga gacgtcgcag gctgtcgtcg atagagcgca
    25801 aaatttgtgc acgggataat ccttccggta aatcaccaac gcgatggaac actttggtgg
    25861 caacgaccac gtcttcacga cgggcgaaat cccgcagtgc gcgaccaacg atctcttcgc
    25921 tgctaccatc ggaatagcta ttggcggtat caaagaaatt tatgccgcct tccagtgcgc
    25981 gtttaattat gggacggctg ctctcttccg gcagtgtcca tgcgtgatta ccacgatctg
    26041 gctcgccaaa ggtcatacag ccgaggcaaa gtcgggaaac gcgaaggtcg gtttttccta
    26101 aggggttgta ttgcatgctg ccactcctgc catgaataat ttcttaagca tagcaggagt
    26161 ggagtaggga ttatgccagc caggccttga ttttggcttc cataccggcg gcatcgaggc
    26221 cgagttcggc gcgcatttct tcctgcgttc cttgcggaat aaagaagtca ggcaggccaa
    26281 tgttcagcac ggggactggt ttacgatggg ccattagcac ttcgttcact ccgctgcctg
    26341 caccgcccat aatggcgttt tcttctacgg taaccagtgc ttcatgactg gcggccattt
    26401 ccagaattaa cgcttcatca agcggtttca caaaacgcat atcgaccagc gtggcgttca
    26461 gcgattcggc gactttcgcc gcttctggca tcagcgtacc aaagttaagg atcgccagtt
    26521 tctcgccacg acgcttcaca atgcctttgc caattggtag tttttccagc ggcgtcagtt
    26581 ccacgccgac cgcgttgcca cgcgggtagc gcaccgctga cgggccatcg ttatagtgat
    26641 agccggtata gagcatctgg cgacattcgt tttcatcgct cggggtcata atgaccattt
    26701 ccggtatgca gcgcaggtaa gagagatcaa aagcaccctg atgggtttga ccgtcagcac
    26761 caacaatgcc cgcgcggtcg atggcgaaca ggaccggaag cttttgaatt gccacgtcat
    26821 gcagcacctg atcataggcg cgttgcagga aagtggagta gatcgcgaca atgggtttgt
    26881 acccaccaat cgccagaccg gcggcaaagg tcactgcgtg ttgctcggca attgccacgt
    26941 cgaagtagcg atccgggaat ttacgagaaa actcgaccat gccggaacct tcacgcatcg
    27001 ccggagtaat cgccatcagc ttgttatctt tcgccgccgt ttcgcacaac cagtcgccaa
    27061 agatttttga atagctcggt aaaccgccgc tacttttcgg caaacaaccg ctggagggat
    27121 caaatttagg cacggcgtgg aaagtgattg ggtctttttc tgccggttca taaccacgac
    27181 cttttttggt catgatatgc aggaactgcg ggcctttcag gtcacgcatg ttcttcagcg
    27241 tggtgataag ccccagcaca tcgtgaccgt caaccgggcc gatgtagtta aagcccagct
    27301 cttcaaacaa cgtgccaggg actaccatgc ctttaatatg ttcttcggta cgtttgagca
    27361 gctctttaat gggtggcacg ccagagaaaa cttttttccc gccttcgcgc agtgaagagt
    27421 aaagcttacc ggaaagcagc tgcgccagat ggttgttgag cgcgccgaca ttttcggaaa
    27481 tcgacatttc gttgtcgttg aggaccacca gcatatcagg acggatatcg cccgcgtgat
    27541 tcatcgcttc aaacgccatg cctgcggtaa tcgcgccatc gccgattaca cagacggtac
    27601 ggcgattttt gccttctttc tcggcagcaa ccgcaatacc aattccggca ctgatggagg
    27661 ttgatgaatg cccgacgctt aatacgtcat attcgctttc gccgcgccac gggaacgggt
    27721 gcaggccgcc tttctgacgg atggtgccga ttttgtcgcg gcgtccggtc aaaattttat
    27781 gcggataagc ctgatgcccc acatcccaaa tcaattggtc aaacggggtg ttgtagacat
    27841 agtgcagcgc cacggtcagt tcgaccgtgc ccagcccgga ggcgaagtgc ccgctggaac
    27901 ggctcacgct gtcgagtaaa tagcggcgca gttcgtcgca gagtttcggt aaactctctt
    27961 tcggcaacag tcgtaactcc tgggtggagt cgaccagtgc cagggtcggg tatttggcaa
    28021 tatcaaaact catcaggggc ctattaatac ttattgttta tttattacgc tggatgatgt
    28081 agtccgctag cgcttccagt gccgaggtat cgggtgactg ttcagccagt tgtttcagcg
    28141 actgacgggc atcgtcgatc agatcccggg ctttcttccg ggcttgctca agacccagaa
    28201 gtgcagggta ggtactttta ccaagttgct ggtcggcacc ctggcgtttt cccaacgttg
    28261 cagtatctcc taccacatcc aggatgtcat cctgaacctg gaaggcaagg ccgatgctct
    28321 ctgcgtactt gtcgagtact ggcagagcac gacgcccttt atctccggcg cttaatgcac
    28381 caagacgaac ggcggcgcga atcaatgcgc cggttttatg acgatgaata cgctcaagcg
    28441 cgtccagagg tacgtgtttg ccttccgcgt ctaaatctaa tgcctgacca ccgcacattc
    28501 cggcaatacc gctggcgctc gccagttcag aaatcatcga aattctgtcg cgatccgaca
    28561 cttccggcat atcagcatcg cttaaaatcg agaacgccag cgtttgtaaa gcgtcgccag
    28621 cgagaatcgc gtttgcttcg ccaaacttca catggcaggt cggcaaaccg cgacgcagat
    28681 cgtcatcatc catcgccggt aaatcatcat gaattaatga gtaagcgtgg atacactcta
    28741 cggcggcagc gggtgcgtcc agcgtgtttg tgctaacgcc aaacatatga ccggtggcat
    28801 aaaccaggaa gggtcgcaga cgcttaccac ctaataatgc accatactgc atggtttcga
    28861 ccacgggagt gttctgaaag ggcagtgggg cgataaaacg gctcagcgcc tggttggcct
    28921 gcttaacgca ggcttcgagt tgctgcggaa agtccattac tcattgtccg gtgtaaaagg
    28981 ggttagagag gcgtcttcat tgtcagacag cagaatttgt acgcgctgtt cggcttgttg
    29041 taatttggcc tgcccctgac gtgccagctg cacgccgcgt tcgaactcgt tcagcgcctc
    29101 ttccagcggc aggtcgccac tttccagacg ggttacaatc tgttccagct cgctcagcgc
    29161 cttttcaaag ctggcgggag cctcattttt cttcggcata atgaatgtct gactctcaat
    29221 atttttcgcc ccgtcatggt aacggactca gggcaaatag caaataacgc gcaatggtaa
    29281 ggtgatgtgc gcagcaaagc gatgttagtg gtatacttcc gcgcctggat gcagccgcag
    29341 gtgtgggctg ctgtattttt ccctatacaa gtcgcttaag gcttgccaac gaaccattgc
    29401 cgccatgaag tttatcatta aattgttccc ggaaatcacc atcaaaagcc aatctgtgcg
    29461 cttgcgcttt ataaaaatcc ttaccgggaa cattcgtaac gttttaaagc actatgatga
    29521 gacgctcgct gtcgtccgcc actgggataa catcgaagtt cgtgcaaaag atgaaaacca
    29581 gcgtctggct attcgcgacg ccctgacccg tattccgggt atccaccata ttctcgaagt
    29641 cgaagacgtg ccgtttaccg acatgcacga tatttttgag aaagcgttgg ttcagtatcg
    29701 cgatcagctg gaaggcaaaa ccttctgcgt acgcgtgaag cgccgtggca aacatgattt
    29761 tagctcgatt gatgtggaac gttacgtcgg cggcggttta aatcagcata ttgagtccgc
    29821 gcgcgtgaag ctgaccaatc cggaagtgac tgtccatctg gaagtggaag acgatcgtct
    29881 cctgctgatt aaaggccgct acgaaggtat tggcggtttc ccgatcggca cccaggaaga
    29941 tgtgctgtcg ctcatttccg gtggtttcga ctccggtgtt tccagttata tgttgatgcg
    30001 tcgcggctgc cgcgtgcatt actgtttctt taaccttggc ggcgcggcgc atgaaattgg
    30061 cgtgcgtcag gtggcgcatt atctgtggaa ccgttttggc agctcccacc gcgtgcgttt
    30121 tgtcgctatt aatttcgaac cggtcgtcgg ggaaattctc gagaaaatcg acgacggtca
    30181 gatgggcgtt atcctcaaac gtatgatggt gcgtgccgcg tctaaagtgg ctgaacgtta
    30241 cggcgtacag gcgctggtca ccggcgaagc gctcggccag gtgtccagtc agacgctgac
    30301 caacctgcgc ctgattgata acgtctccga tacgctgatc ctgcgtccgc tgatttctta
    30361 cgacaaagag cacatcatca acctggctcg ccagattggc accgaagact ttgctcgcac
    30421 gatgccggaa tattgcggtg ttatctccaa aagcccgacg gtgaaagcgg ttaagtcgaa
    30481 gattgaagcg gaagaagaga aattcgactt cagcattctc gataaagtgg ttgaagaagc
    30541 gaataacgtt gatatccgcg aaatcgccct gcagaccgag caggaagtgg tggaagtgga
    30601 aaccgtcaat ggcttcggcc cgaacgacgt gatcctcgat atccgttcta tcgatgaaca
    30661 ggaagataag ccactgaaag tcgaagggat tgatgtagtt tctctgccgt tctataaact
    30721 gagcaccaag tttggcgatc tcgaccagaa cagaacctgg ctactgtggt gtgagcgcgg
    30781 ggtgatgagc cgtctgcagg cgctctatct gcgcgagcag ggctttaaca atgtgaaggt
    30841 atatcgcccg taatttgtgg ttgtaacgtc gcatctggtc agatgcgacg cttaccgcat
    30901 ccgacactac tcgtaataat tataaatccc tgccgccatc accagttgtg atgccacttc
    30961 atgggctttc tcgcgcccaa cctgcaggtc gataattttc agaccaaagt cgatagctgt
    31021 ccccggcccc tggctggtca gcaattttac ccgtgcatcc cagacgacgc gcttgtcctg
    31081 ccattgttca gcgggaattt tgtctttcag cgtcgggaag ccggtcatat taccaatcgg
    31141 gaagatatcg tgcggcacca gcacggtggc tggcgcggcg caaatagccg cgacgatacg
    31201 cccggaacgg tggaactgtt taacggtttc aaccagcaga gtgctatcgc gaaaacactc
    31261 tgcgccttta atgccaccag gcagtacgat cacgtcatat tcgccatcag ccacctcgac
    31321 cagcggcgca tccgccagca gcttcacgcc gcgcgagcag gtaattgcca ggttgccatc
    31381 gctggctacg ctggcagtgg tgactttgat accgccgcga accaagaggt cgatcgtggt
    31441 gacggcttca gtctcttcac taccaggggc gaggcaaacc agtgccgatg cgctcatatt
    31501 cactctcctt tctttttacc atttcaaaca ggcgggtgtt ttccggtacg gcaatcccat
    31561 gcgcgcgggc gcggcgtaag agaaaaccat tgatatagtc gatttcggtg tggcgcagcg
    31621 cgcggatatc ctgcaacatc gacgagatat tttccgctgt ggcatcaatc acctgcatca
    31681 cgtaatcacg caaatcttcc gctgaagtat gatgcccttc gcgttcgatc actgccgcga
    31741 cttcttcgca tatttgcata atttcttgcg gatgatgacg taattcaccg ttcgggcaat
    31801 tccagatggc ggtcagtgga ttaatcacgc agttgactgc cagcttgcgc cacagctcgg
    31861 cgcgaatatt gttatgccag gcaacgtcag gcaacacggt ttgtaaaata tccgccagat
    31921 aactgtaatc gccatcctgt tgccgtgccg gaccaatatg cgtgataccg tttgccacat
    31981 gaataatgac attgccgtcg cggcgggcgg catgggtggt ggtgcccatc agtaatggct
    32041 gctgaatatt ttgcaactct tcgatggtgc ccatgccgtt gtgaattaac agtattggcg
    32101 tggttacagg cagtgtggac gcgaggcttt tgacggcatc ggaaacctgc catgctttca
    32161 gcgtcaccag gagcagatcg ctggtggcga gaaaatcggg atcgttggcg gtcagcgatt
    32221 cgttaaatat cgaaccatct gtctcaacca gattcgcact acaataaggt tgcggtacgc
    32281 gcagccagcc ctgaacttca tgaccctgtt tgcaaagtgc tgtaagccat aattgcccta
    32341 aggcaccgca tcccaatacg gtaattttca ttgttcctcc tcacccgcaa ccactccggg
    32401 tgttcaataa ggctatccct taattgtgca tgctgttgcg actatgcaca attaagggat
    32461 acgtcctggt gcaggactgt cggttattta actttgcggg tattatgctt cgcatcaaaa
    32521 atgaagggag aggaaaagat gccatctttc gatattgtct ctgaagttga tcttcaggaa
    32581 gcacgtaacg cggtcgataa cgcgagccgc gaagtggagt cccgttttga cttccgtaac
    32641 gttgaagcct catttgagct gaacgacgcc agcaaaacca tcaaagtgtt gagcgagtcc
    32701 gatttccagg tcaatcagtt gctggatatt ctgcgtgcca agctgctgaa gcgcggcatt
    32761 gaaggcagtt cactggatgt accggaaaat atcgttcata gcggtaaaac ctggtttgtg
    32821 gaagcgaaac tgaagcaggg cattgagagc gcgacccaga aaaaaatcgt caagatgatc
    32881 aaagacagca aactgaaagt gcaggcgcaa attcagggcg atgagatccg cgtgactggc
    32941 aaatctcgtg atgatttgca ggctgtcatg gcgatggtgc gcggtggcga tctgggtcag
    33001 ccgttccagt tcaaaaactt ccgcgattaa tcgcgacaac ctgcgctttg ttcatgtcag
    33061 atgcggcatg aacgcctggt tcggcctaca aaggcttgta aatcaggggc ttagtaggcc
    33121 tgatgagcgt agcgcagcag gcaatttcgc ctcgctttta tgcctggcga attgcctgtt
    33181 caacatcaaa gcgattcgtc actttgctgt cgattttcac ataagctgaa tgttcttctt
    33241 ctgcaatcaa cacttctttg atgccttcag tttctagcaa acgcactttt aacgcctcgt
    33301 ttgcggcaat gttcgccggg atttcaatgc gcaaactgct gacatacgcc ggttctttca
    33361 tggtactggc gactgccagc cacactgcgg ccagcattgc gccagcgaga aatacgccct
    33421 gaccgtcaaa catgccgtca atccagccgc ccagtgaacc gccaatcgcc acgccaagaa
    33481 actggctggt ggagtaaaca cccatcgctg tacctttgta acctgctggc gactctttac
    33541 tgataagtga aggcagaagg gcttccatca aattaaacgc tacaaagaaa agctgcacgc
    33601 cgaccaccag ttgccagaac tgcgtttgcg cgttccacaa cacaatttcc gcaaccacga
    33661 tcaatccgac gcagaagaca aagacttgct tcattttgcg cttaacttca gcgtagataa
    33721 tgaaaggcac gaccgagcca aaggcgatta gcattgtcgc cagatagacc ttccagtgtt
    33781 cagccgccgg gaaccctgca tcagccagtt gtccgggcag ggcaacaaac gtcgacatca
    33841 gcaaaatatg cagacacata atgccaaagt tgagtttcag cagccgcggt tccgccagca
    33901 ctttactgaa actgcctttc accattccgg actcacgatt aagtacgtga gtgctactgt
    33961 tgggcacaac ccaaatggtc aacgcaatgc cggtcgttgc cagaatagcg atcatccaga
    34021 acagcgcgtg cagcccaagt ttgtgagtga tgatcgggcc aagcaccatc gcaatggcaa
    34081 aggtaatgcc aaagctcacg ccgataaacg ccattgcttt ggtgcggttt tgttcgcgcg
    34141 tgagatcgga aagcagcgcc ataacggcag cggcaatcgc accggagcct tgtagcgccc
    34201 ggcctagaat aattccccag atggagtcag agagcgcagc gataacgcta ccggcggcaa
    34261 acaccgccag cccaccgaca attaatggtt tgcgaccaat acggtcggaa agcaggccaa
    34321 acggaatctg aaaaacggcc tgagtcagac cataaatacc aatggcaata ccgattaatg
    34381 cttcgctggc accttgcaga gccatgccat acgtggtcag aaccggcaga accataaaca
    34441 tgcccagcat gcgcaacgag aatacggtcc ctaaacccca ggtcgcgcgc ctctcacctg
    34501 gcgtcatttt ataatcgttc attaccacct ctgttttaaa ttcgcgacta gtgtaaagcg
    34561 gcaaacgaat ggggtaaaca tgcggatttt ttagtaaata tttcgagagg gatatgtttc
    34621 taatgctaag aaaaaaggtg ccgtagcacc tttttaatag agaggttttg ttaccacaca
    34681 gcagccagca gcgtatgcga gtccggtacc ataaaatcaa cggacatcat caccgagagg
    34741 gcagtgatgg cgatgataga gaagccgaac agcttgcgcg cccagattct gtcatcagca
    34801 actttataac cgcgcagagc catacctaac caccagacgc taaccgccgc ggcgaccacc
    34861 agatatttat atccagcgta accgccaaga gagagcatca gcgtggcaac ggcaaaggcg
    34921 atgatataca gcgtgatgtg attcttcgcc accgaaatgc cttttaccac tggcaatacc
    34981 ggaatgtttg ccgcctggta atccttaaag cggaaaatgg cgatggcata ggagtgaggc
    35041 atctgccaca ggctgaagat agccagcagg atcgctgcgc cgctatcgaa ctcgccggtt
    35101 actgcacagt agccaatcac cggcggcgca gcgccggaga gcgaaccaat caatgtgccg
    35161 tagactgagt ggcgtttcat gtacaggcta tagacgccga cataaaccac aaagcccatc
    35221 acccccagcc agcaggccag cggattcgcg ccaaaccaca gcagcataaa gccagcaata
    35281 cccagcaagg tggcgtacac cagcgagaca gcaggagaga tcaggccttt aaccagcacc
    35341 cgattcttcg tcctttccat ctttctgtcg atatccctgt cgatgtagtt gttaaacaca
    35401 caacccgacg ccacaaccag tgacacccca accagcgtgt agataaacag gggataatca
    35461 atgctgccct ttgaggccag caggaatccc ccaatcaccg agatcaggtt gccaaagatg
    35521 atgcctggtt tcgttacttg caggtattgc ttaaacatca taaccgccgc tcttagtgca
    35581 tcatcatgtt gtagttgagg ttccacataa tccagatgga gcctacaacc aggatagcga
    35641 tgattagcac ggtgaagaca aacgccgtca tgttccagcc ttcatctgat ttggtattca
    35701 tgtgcaggaa gcacaccaga tgcaccagaa cctgtaccac tgccattgcc aggattgttc
    35761 ccagaattac ggccggagag gcagcccctg tcatcaccat ccagaacgga atcaccgtca
    35821 gaatgatcga caggataaag cctgtcatgt aggtttttac gctgccatgg gacgcgccgc
    35881 tgtgatcggt agaatgactc attacatcgc ccccatcaga taaacaacag tgaacacaca
    35941 gatccaaacc acatccagga agtgccagaa caggctcagg cacatgatgc gggtacggtt
    36001 agtgctggtc aggccgcgac gagcgatttg taccatcagc accgccatcc agataagacc
    36061 ggaagtgacg tgcagaccgt gcgtgccgac cagcgcaaag aacgctgaca ggaagccgct
    36121 gcgatccgga cccatgccgt taacaatcag gtgatggaat tcgtagattt ccatcccgat
    36181 aaatccggca ccaaacaaac aggtcaacgc cagccaggag ataacctggc ttttgttgtt
    36241 tttgtacatg gcgatagccg ccatgccgta ggtgatggag ctgaacaaca gcaagaaagt
    36301 ttcaaccaga acgaacggca gttcgaaaat gtccttacct gtcgggccgc ctgcggtgcc
    36361 gttcaccaga acggcatagg tagcaaacaa gattgagaac agaatgcagt cgctcatcag
    36421 gtagatccaa aatccgaaga ttttggttcc gcctgcatcg tggtgcccgt gttcgtgcgc
    36481 gtgggcagtc gcgtgcgtca aagtatcagt tgccattttt cagccctgcc ttagtaatct
    36541 catcgaaatg ctggttttcc agtttttcga tttctgccac cggcacgtag taatccacgt
    36601 cctcgtcgaa gcttttcacg atccaggtga tgatcatgcc tgcgaagcca acaatcgcca
    36661 gccaccagat atgccagatc atggcgaaac cgaagatggt ggagaaagct gcaatgacga
    36721 tacctgcacc gctgtttttc ggcatatgaa tttcttcata gtggtcaggc tttttatacg
    36781 cttcgccttt ctctttcatt tcccagaatg catcacgctc gtgaacgtgc ggcacaacgg
    36841 caaagttata gaacggaggc ggggaagagt ttgcccactc cagcgtacgg ccaccccacg
    36901 ggtcgccagt caggtcacgg ttctggtcgc ggtcgcgaat agaaacgtac atctgaataa
    36961 cgaggcagag aatacccagc gcaatcagta ctgcaccgct agctgcaatc atcagcatgg
    37021 tgtggaactg cgggtcaatc tgctggctca aacgacgggt catgcccatg aagcccagtg
    37081 catacagcgg cataaaggca acgaagaagc cgatgatcca gaaccagaac gcgcgtttac
    37141 cccaggtttc attcagtttg aaaccgaacg ctttaggcca ccagtaggtc atccctgcga
    37201 agcagccgaa gaccacgccg ccgatgataa cgttatggaa gtgcgcaatc aggaacaggc
    37261 tgttatgcag aacgaagtcc gcgcccggta ctgccagcag cacgccagtc atcccgccca
    37321 ccgagaaagt gacgataaaa ccgatggtcc acagcatcgc agaatggaac acgatacggc
    37381 cctgatacat ggtgaacagc cagttgaaga tcttcacccc ggtcgggatg gcgataatca
    37441 ttgtggtgat accaaagaag gcgtttacgt tcgcgcccgc acccatcgta aagaagtggt
    37501 gcagccaaac gatgaacgac agcacggtga tacagacggt tgcccatacc agcgaggtat
    37561 aaccaaacag acgtttacgc gagaaggttg ccgcaatttc ggagaacaca ccgaaaacag
    37621 gcaggatcag gatgtaaact tccgggtggc cccaggccca aatcaggttg atgtacatca
    37681 tcatgttgcc acccatatcg ttggtaaaga aatgggtgcc cagatagcga tccagggtca
    37741 acaacgcgac ggtaaccgtc agaattggga aggaagcaat aatcagtacg ttcgcgcaca
    37801 gtgatgccca ggtaaatact ggcatcttga acatggtcat gcccggtgcg cgcatcttca
    37861 gaatggtaac gaagaagttg ataccggtaa gcgtcgtacc tataccggat agctggagac
    37921 tccatatcca gtaatcaaca ccgactcccg gactgtactc tattcccgat agcggtggat
    37981 aggccagcca gccggtctgc gcaaattcgc ccacgccgag agaaacgtta accagaatca
    38041 caccaacaac agtaaaccag aagcttaagt tgttgaggaa cgggaacgca acgtcacgcg
    38101 cgccgatctg cagcggaacc accaggttca tcagaccgat aacgaaaggc atcgccacga
    38161 agaagatcat aatcacgccg tgcgcggtga agatctgatc gtagtggtga ggtggcagga
    38221 agcccgcttc gcccgccgag gcaagagcct gctggctacg catcataatg gcgtcagcaa
    38281 aaccacgcag caacatcaca atcgccacga tgatatacat gataccgagg cgtttatggt
    38341 cgacggaggt cagccactct ttccacaggt aggtccactt accgaagtaa gtgatcaggc
    38401 caacgagcgc cagacctccc aaaataatgc cagcgatcgt aaccatgacg ataggttcat
    38461 ggaacgggac tgcatcaagt gataattttc cgaacatctt tattcttcct caaccccttt
    38521 aatgggcgga ttccgcgtgg ctcatgtcca tgccttccat accttcgtgt gcgctgtgct
    38581 caccttctgg ctgggtcatg tccatgctct taccgtgagc cataaacttg ttaatcacat
    38641 cagcaaacaa gtctggtttc acgttggaga aatattccac ctggttgtat tcgctaggcg
    38701 cggccagttt ttcgaacgca gccatgtcag acatggtgtt cggcgactgc ttcgcttttg
    38761 cgacccactg gtcgaattcg gcgcgatccg gtgttgcaat agctttgaac ttcatgcctg
    38821 agaagcccgg gccgctgtag ctggcggaga taccgtcata agtaccgggt tcgttggcga
    38881 tcagatgcag gcgagtctgc ataccagcca tggcataaat ctggctaccc agacgcggaa
    38941 tgaagaagga gttcatcacg gagttggagg tcactttgaa gtacaccgga gtgttcgccg
    39001 ggaaagcgat ttcattcacg gtagcaatgc cctgttccgg gtagatgaag aaccatttcc
    39061 agtccatgga aaccacttcg atggtaatgg gcttctcgtc gtgtgccagc ggcttgctag
    39121 gctcaagagc gtgagtggtt ttccaggtca gtaccgcaag gaagatgatg attaagatag
    39181 gtaccgtcca gaccacagct tccactttat tggagtgtga ccagttcggg ctgtacttag
    39241 catctttatt gctcgcacga tacttccagg cgaaaccaac agccatcaag attgcgggaa
    39301 taacgacaat caacatcagg ccaaatgccg tcagtatcag tgaacgttgc tccagaccaa
    39361 tctgtccttt gggatctaac agcgcagaat tacagccact gagcaataca gtgcctgcaa
    39421 ataatgacaa ccatcccaaa cttttattgt atttcctgag tctcatttaa cgacctcaat
    39481 tccacgggat ctggtggcgt ttaaagtgtg tgggcatttt atgggaaggt tacattactg
    39541 taaacatgat taaattcctg ttacttggat ttgactgtca ggtcacatat gttgcaaaac
    39601 atatcaagtt gattttaaga agctgttgca aaagggcgtt ataacgaaag gggagtgcag
    39661 aaggagtttg gatgggcaat tggtataacc aatctggaat aaaataattg tttaacaaat
    39721 aattatcatt atggtgacaa ttgggtgggg ggaaaataaa gactcgttag ctgaatcgtg
    39781 taagaaaaaa tagaattcat aaattgcgtc aataatttcc aaacgctaag ccgcacaaaa
    39841 gaacaaatat tattaagcga tactgatgtt tatttagccg taataattac ggcgagtgat
    39901 tactacagct aaataatatt tacagattac gtcagatgcg tttttcgtag agccagataa
    39961 tccagcaaac caccaagcac gacgccagaa agggcgacta aaaccccgac ttccagcaga
    40021 gcaggcagga aagagaagtg cgtcaaatcc agcgcgtcca tcgtcaacag cagtaaccac
    40081 acggccaaca ggctgacgcc cgccgccagt gtccacatgg caaaggcata acctgccgga
    40141 tattcggtac gggagataaa gttgtcattt actcgtgtat attcaagcgt ctggcggcaa
    40201 accagcagca aaataagccc cggtacggca gcggcgacgg agaatagata gaatgtcgac
    40261 cagccgtgtg cttcaacaaa ccaacccgcc acggggccga cataaactcg tcctacagcg
    40321 gaaagcgctg agagcagggc aaattgagta gcggaaaatg acttattaca cagcgtcatt
    40381 aacagcgcga caaaggctga tgtgcccatc ccgccacaga ggttttcgaa aaagacggct
    40441 gcgcccatgc tgtagagatg cttatcagta atcgacagca gccagtaacc agcgttagac
    40501 gcaccttgta aaatgccgaa aatcagcagc gcccggaaca gcgacaggcg ctgcatcaaa
    40561 atcccaccgt acaatgcgcc cacaatggtc gccagtaagc caagcgtttt gttaaccacg
    40621 cctacttcac ccgcatcaaa cccgacgccg cgaatcaaaa acgtggttgt caggctcatg
    40681 gcgaatgcgt cgcccagctt atacagcacg ataagaagca aaataagcca ggcattattg
    40741 cgaccaaaga aatctcgcag aggtgcaaca accgcttgtt ccagcgtttt tggcacagga
    40801 atggtgtcgg tcggttctgg tgcaagcaac gtcgcgataa tacaagggat caacagcgcc
    40861 gccatcaacc agtacatgcc ctgccagccc agccatttat ctgccagcca cagggctaag
    40921 ccgccggaaa ccagcatccc taaacggtaa cccagcacgc tgattgccgc gcccgcacca
    40981 cgttcttctg ccgggagcac atcggttttc cacgcatcga agacaatatc ctgggaggcc
    41041 gagcaaaaag cgatcaccac cgccagtgcc gccatccagc ggagttgggt gccaggttcg
    41101 agaaaaccca tcgccgcaat ggcgactaat aacaggattt gcgtggcgag cagccaaccg
    41161 cgccgccgcc caaaaaatgg gggcgtgtag cggtccatca gcggtgacca gaggaattta
    41221 aaaacgtaag cctggcctac cagagagaag aaaccaatgg ttttgagatc aatattctcg
    41281 accgtcatcc aggcctgtaa ggtaccggat gtcagggcga gcggtagccc ggaagcaaaa
    41341 cccaggatca gcaatatggc tgaacgcggc tgttgaaaaa tacgtaaata ttgactggac
    41401 atgggcgtct acaggcccgg tttgcaccgg gccagagggc agaaattaac gcgcgttctg
    41461 cttgatgaat tcgtgaatgc tggtgtcctg agacatatca gcgatggtat cggtcagcac
    41521 actgttaacc gcatcggcga tatttttgtt ggaggcctgg aacgcacctt caacgttgta
    41581 gctggcacga tagtttttgg ttattttgtt gccattctgc gcggtagcga tgatggcgat
    41641 atccgctttg gtagcgatgt tgtagcgcac gttgccctgg gacacgtcag catacagttg
    41701 gctaacgatg atttgcagat taaccgggcc attcggacca accatgtaac cacgcgcggt
    41761 catctgtttt tccagcactt cttgcagcag gaaacgcaga tcgcgggagg cggccagggt
    41821 aacgatttga ttatcgcggg tgacttttgc cagcgcctga tcggtacgct gatcggcacc
    41881 attaatgctt acggtgacgc ccatcaggct tggatcctgc tgtggcagtg taatcgtcgg
    41941 ggaaacttca atagttgttg gcggttttgc gcatcctgca agcataaaca gagcaactaa
    42001 cgggaagagg atttttttga acatgttcgg gctctcagag actcttaagc gtgtttggta
    42061 aaaattcccg ccatcataac attgccaacg gcgaggggaa gtgggtaagg catgtaaatt
    42121 catcatgttg acgaaataat cacccctggt aaaagaaacg ctgatgcgag gcctgtgttt
    42181 caatctttaa atcagtaaac ttcatacgct tgacggaaaa accaggacga aacctaaata
    42241 tttgttgtta agctgcaatg gaaacggtaa aagcggctag tatttaaagg gatggatgac
    42301 atctcagcgt tgtcggagga gatatttcat gatgatacgt gagcggatag aagaaaaatt
    42361 aagggcggcg ttccaacccg tattcctcga agtagtggat gaaagctatc gtcacaatgt
    42421 cccagccggc tctgaaagcc attttaaagt tgtgctggtc agcgatcgtt ttacgggtga
    42481 acgttttctg aatcgtcatc gaatgattta cagtacttta gcggaggaac tctctactac
    42541 cgttcatgcg ctggctctgc atacttacac tattaaggag tgggaagggt tgcaggacac
    42601 cgtctttgcc tctcctccct gtcgtggagc aggaagcatc gcgtaaaaac gcatttgcaa
    42661 ctgtcggcgc tttttcagta tgttgctaaa gattttatga aaaacggcct gcgggccgtt
    42721 ttgttttgtc tggattttgc gctttttgcc cagcattcag acgaaaattg cccgggaatt
    42781 gtgaaaaaat acgcgacagc gcgcaataac cgttctcgac tcataaaagt gatgccgcta
    42841 taatgccgcg tcctatttga atgctttcgg gatgattctg gtaacaggga atgtgattga
    42901 ttataagaac atcccggttc cgcgaagcca acaacctgtg cttgcggggt aagagttgac
    42961 cgagcactgt gattttttga ggtaacaaga tgcaagtttc agttgaaacc actcaaggcc
    43021 ttggccgccg tgtaacgatt actatcgctg ctgacagcat cgagaccgct gttaaaagcg
    43081 agctggtcaa cgttgcgaaa aaagtacgta ttgacggctt ccgcaaaggc aaagtgccaa
    43141 tgaatatcgt tgctcagcgt tatggcgcgt ctgtacgcca ggacgttctg ggtgacctga
    43201 tgagccgtaa cttcattgac gccatcatta aagaaaaaat caatccggct ggcgcaccga
    43261 cttatgttcc gggcgaatac aagctgggtg aagacttcac ttactctgta gagtttgaag
    43321 tttatccgga agttgaactg cagggtctgg aagcgatcga agttgaaaaa ccgatcgttg
    43381 aagtgaccga cgctgacgtt gacggcatgc tggatactct gcgtaaacag caggcgacct
    43441 ggaaagaaaa agacagcgct gttgaagcag aagaccgcgt aaccatcgac ttcaccggtt
    43501 ctgtagacag cgaagagttc gaaggcggta aagcgtctga tttcgtactg gcgatgggcc
    43561 agggtcgtat gatcccgggc tttgaagacg gtatcaaagg ccacaaagct ggcgaagagt
    43621 tcaccatcga cgtgaccttc ccggaagaat accacgcaga aaacctgaaa ggtaaagcag
    43681 cgaaattcgc tatcaacctg aagaaagttg aagagcgtga actgccggaa ctgactgcag
    43741 aattcatcaa acgtttcggc gttgaagatg gttccgtaga aggtctgcgc gctgaagtgc
    43801 gtaaaaacat ggagcgcgag ctgaagagcg ccatccgtaa ccgcgttaag tctcaggcga
    43861 tcgaaggtct ggtaaaagct aacgacatcg acgtaccggc tgcgctgatc gacagcgaaa
    43921 tcgacgttct gcgtcgccag gctgcacagc gtttcggtgg caacgaaaaa caagctctgg
    43981 aactgccgcg cgaactgttc gaagaacagg ctaaacgccg cgtagttgtt ggcctgctgc
    44041 tgggcgaagt tatccgcacc aacgagctga aagctgacga agagcgcgtg aaaggcctga
    44101 tcgaagagat ggcttctgcg tacgaagatc cgaaagaagt tatcgagttc tacagcaaaa
    44161 acaaagaact gatggacaac atgcgcaatg ttgctctgga agaacaggct gttgaagctg
    44221 tactggcgaa agcgaaagtg actgaaaaag aaaccacttt caacgagctg atgaaccagc
    44281 aggcgtaatt tacgcagcat aacgcgctaa attcgcacaa aggcccgtca ccgccaggtg
    44341 gtgggctttt tttgtcatga attttgcatg gaaccgtgcg aaaagcctct ttcggtgtta
    44401 gcgtaacaac aaaagattgt tatgcttgaa atatggtgat gccgtaccca taacacaggg
    44461 actagctgat aatccgtcca taaggttaca atcggtacag caggtttttt caattttatc
    44521 caggagacgg aaatgtcata cagcggcgaa cgagataact ttgcacccca tatggcgctg
    44581 gtgccgatgg tcattgaaca gacctcacgc ggtgagcgct cttttgatat ctattctcgt
    44641 ctacttaagg aacgcgtcat ttttctgact ggccaggttg aagaccacat ggctaacctg
    44701 attgtggcgc agatgctgtt cctggaagcg gaaaacccag aaaaagatat ctatctgtac
    44761 attaactccc caggcggggt gatcactgcc gggatgtcta tctatgacac catgcagttt
    44821 atcaagcctg atgtcagcac catctgtatg ggccaggcgg cctcgatggg cgctttcttg
    44881 ctgaccgcag gggcaaaagg taaacgtttt tgcctgccga attcgcgcgt gatgattcac
    44941 caaccgttgg gcggctacca gggccaggcg accgatatcg aaattcatgc ccgtgaaatt
    45001 ctgaaagtta aagggcgcat gaatgaactt atggcgcttc atacgggtca atcattagaa
    45061 cagattgaac gtgataccga gcgcgatcgc ttcctttccg cccctgaagc ggtggaatac
    45121 ggtctggtcg attcgattct gacccatcgt aattgatgcc agaggcgcaa ctgtgccgct
    45181 atacttatcc agggcggcac aacgctgtaa gcggcttgcg cctgagaatg gcatttgcgt
    45241 cgtcgtgtgc ggcacaaaga acaaagaaga ggttttgacc catgacagat aaacgcaaag
    45301 atggctcagg caaattgctg tattgctctt tttgcggcaa aagccagcat gaagtgcgca
    45361 agctgattgc cggtccatcc gtgtatatct gcgacgaatg tgttgattta tgtaacgaca
    45421 tcattcgcga agagattaaa gaagttgcac cgcatcgtga acgcagtgcg ctaccgacgc
    45481 cgcatgaaat tcgcaaccac ctggacgatt acgttatcgg ccaggaacag gcgaaaaaag
    45541 tgctggcggt cgcggtatac aaccattaca aacgtctgcg caacggcgat accagcaatg
    45601 gtgtcgagtt gggcaaaagt aacattctgc tgatcggtcc gaccggttcc ggtaaaacgc
    45661 tgctggctga aacgctggcg cgcctgctgg atgttccgtt caccatggcc gacgcgacta
    45721 cactgaccga agccggttat gtgggtgaag acgttgaaaa catcattcag aagctgttgc
    45781 agaaatgcga ctacgatgtc cagaaagcac agcgtggtat tgtctacatc gatgaaatcg
    45841 acaagatttc tcgtaagtcg gacaacccgt ctattacccg tgacgtttcc ggtgaaggcg
    45901 tacagcaggc actgttgaaa ctgatcgaag gtactgttgc tgccgttcca ccgcagggcg
    45961 ggcgtaagca tccgcagcag gaatttttgc aggttgatac ctccaagatc ctgtttattt
    46021 gtggcggtgc gtttgccggt ctggataaag tgatttccca ccgtgtagaa accggctccg
    46081 gcattggttt tggcgcgacg gtaaaagcga agtccgacaa agcaagcgaa ggcgagctgc
    46141 tggcgcaggt tgaaccggaa gatctgatca agtttggtct tatccctgag tttattggtc
    46201 gtctgccggt tgtcgcaacg ttgaatgaac tgagcgaaga agctctgatt cagatcctca
    46261 aagagccgaa aaacgccctg accaagcagt atcaggcgct gtttaatctg gaaggcgtgg
    46321 atctggaatt ccgtgacgag gcgctggatg ctatcgctaa gaaagcgatg gcgcgtaaaa
    46381 ccggtgcccg tggcctgcgt tccatcgtag aagccgcact gctcgatacc atgtacgatc
    46441 tgccgtccat ggaagatgtc gaaaaagtgg ttatcgacga gtcggtaatt gatggtcaaa
    46501 gcaaaccgtt gctgatttat ggtaagccgg aagcgcaaca ggcatctggt gaataattaa
    46561 ccattcccat acaattagtt aaccaaaaag gggggatttt atctcccctt taatttttcc
    46621 tctattctcg gcgttgaatg tgggggaaac atccccatat actgacgtac atgttaatag
    46681 atggcgtgaa gcacagtcgt gtcatctgat tacctggcgg aaattaaact aagagagagc
    46741 tctatgaatc ctgagcgttc tgaacgcatt gaaatccccg tattgccgct gcgcgatgtg
    46801 gtggtttatc cgcacatggt cattccctta tttgtcgggc gggaaaaatc tatccgttgt
    46861 ctggaagcgg cgatggacca tgataaaaaa attatgctgg tcgcgcagaa agaagcttca
    46921 acggatgagc cgggtgtaaa cgatcttttc accgtcggga ccgtggcctc tatattgcag
    46981 atgctgaaac tgcctgacgg caccgtcaaa gtgctggtcg aggggttaca gcgcgcgcgt
    47041 atttctgcgc tctctgacaa tggcgaacac ttttctgcga aggcggagta tctggagtcg
    47101 ccgaccattg atgagcggga acaggaagtg ctggtgcgta ctgcaatcag ccagttcgaa
    47161 ggctacatca agctgaacaa aaaaatccca ccagaagtgc tgacgtcgct gaatagcatc
    47221 gacgatccgg cgcgtctggc ggataccatt gctgcacata tgccactgaa actggctgac
    47281 aaacagtccg ttctggagat gtccgacgtt aacgaacgtc tggaatatct gatggcaatg
    47341 atggaatcgg aaatcgatct gctgcaggtt gagaaacgca ttcgcaaccg cgttaaaaag
    47401 cagatggaga aatcccagcg tgagtactat ctgaacgagc aaatgaaagc tattcagaaa
    47461 gaactcggtg aaatggacga cgcgccggac gaaaacgaag ccctgaagcg caaaatcgac
    47521 gcggcgaaga tgccgaaaga ggcaaaagag aaagcggaag cagagttgca gaagctgaaa
    47581 atgatgtctc cgatgtcggc agaagcgacc gtagtgcgtg gttatatcga ctggatggta
    47641 caggtaccgt ggaatgcgcg cagcaaggtc aaaaaagacc tgcgtcaggc gcaggaaatc
    47701 cttgataccg accattatgg tctggagcgc gtgaaagatc gcatccttga gtaccttgcg
    47761 gttcaaagcc gtgtcaacaa aatcaaggga ccgatcctct gcctggtagg gccgccgggg
    47821 gtaggtaaaa cctctcttgg tcagtccatt gccaaagcca ccgggcgtaa atatgtccgt
    47881 atggcgctgg gcggcgtgcg tgatgaagcg gaaatccgtg gtcaccgccg tacttacatc
    47941 ggttctatgc cgggtaaact gatccagaaa atggcgaaag tgggcgtgaa aaacccgctg
    48001 ttcctgctcg atgagatcga caaaatgtct tctgacatgc gaggcgatcc ggcctctgca
    48061 ctgcttgaag tgctggatcc agagcagaac gtagcgttca gcgaccacta cctggaagtg
    48121 gattacgatc tcagcgacgt gatgtttgtc gcgacgtcga actccatgaa cattccggca
    48181 ccgctgctgg atcgtatgga agtgattcgc ctctccggtt ataccgaaga tgaaaaactg
    48241 aacatcgcca aacgtcacct gctgccgaag cagattgaac gtaatgcact gaaaaaaggt
    48301 gagctgaccg tcgacgatag cgccattatc ggcattattc gttactacac ccgtgaggcg
    48361 ggcgtgcgtg gtctggagcg tgaaatctcc aaactgtgcc gcaaagcggt taagcagtta
    48421 ctgctcgata agtcattaaa acatatcgaa attaacggcg ataacctgca tgactacctc
    48481 ggtgttcagc gtttcgacta tggtcgcgct gataacgaaa actgtgtcgg tcaggtaacc
    48541 ggtctggcgt ggacggaagt gggcggtgac ttgctgacca ttgaaaccgc atgtgttccg
    48601 ggtaaaggca aactgaccta taccggttcg ctcggcgaag tgatgcagga gtctattcag
    48661 gcggcgttaa cggtggttcg tgcgcgtgcg gaaaaactgg ggatcaaccc tgatttttac
    48721 gaaaaacgtg acatccacgt ccacgtaccg gaaggtgcga cgccgaaaga tggtccgagt
    48781 gccggtattg ctatgtgcac cgcgctggtt tcttgcctga ccggtaaccc ggttcgtgcc
    48841 gatgtggcaa tgaccggtga gatcactctg cgtggtcagg tactgccgat cggtggtttg
    48901 aaagaaaaac tcctggcagc gcatcgcggc gggattaaaa cagtgctaat tccgttcgaa
    48961 aataaacgcg atctggaaga gattcctgac aacgtaattg ccgatctgga cattcatcct
    49021 gtgaagcgca ttgaggaagt tctgactctg gcgctgcaaa atgaaccgtc tggcatgcag
    49081 gttgtgactg caaaatagtg acctcgcgca aaatgcacta ataaaaacag ggctggcagg
    49141 ctaattcggg cttgccagcc tttttttgtc tcgctaagtt agatggcgga tcgggcttgc
    49201 ccttattaag gggtgttgta aggggatggc tggcctgata taactgctgc gcgttcgtac
    49261 cttgaaggat tcaagtgcga tataaattat aaagaggaag agaagagtga ataaatctca
    49321 attgatcgac aagattgctg caggggctga tatctctaaa gctgcggctg gccgtgcgtt
    49381 agatgctatt attgcttccg taactgaatc tctgaaagaa ggggatgatg tagcactggt
    49441 aggttttggt acttttgccg ttaaagagcg tgctgcccgt actggccgca acccgcagac
    49501 cggtaaagag atcaccatcg ctgctgctaa agtaccgagc ttccgtgcag gtaaagcact
    49561 gaaagacgcg gtaaactaag cgttgtcccc ggtggggatg tgacgaagtt caagggcgca
    49621 tctactgatg tgcctttttt atttgtattc ggtgactttc tgcgtcttgt gggctgacaa
    49681 ttgcccccgt ttcttgtcac aataggcctt tgcgcgcatc gatacgttgc gtgaggtaca
    49741 cagtcatcta cagcggagtg ttgttacacc atgatggaca gcttacgcac ggctgcaaac
    49801 agtctcgtgc tcaagattat tttcggtatc attatcgtgt cgttcatatt gacaggcgtg
    49861 agtggttacc tgattggcgg aggcaataac tacgccgcaa aagtgaatga ccaggaaatc
    49921 agccgtgggc agttcgagaa cgcctttaac agcgagcgta atcgcatgca gcaacagctg
    49981 ggcgatcaat actccgagct ggcagcgaat gaaggctata tgaaaaccct gcgtcaacag
    50041 gtgctgaatc gtctgatcga cgaggcgctg ttggatcagt acgctcgtga gctgaaactg
    50101 ggtatcagtg atgagcaggt taaacaggcg attttcgcga ccccagcctt ccaggttgac
    50161 ggcaaatttg ataacagccg ctataacggt atcctcaacc agatggggat gaccgccgat
    50221 cagtacgccc aggcgctgcg taaccagctc actacccaac agctgattaa cggtgttgcc
    50281 ggtaccgatt ttatgctgaa aggtgaaacc gacgagctgg cggcactggt cgcgcaacaa
    50341 cgcgtggtgc gtgaggcgac tatcgatgtt aacgcgctgg cggcgaagca gcctgtgacc
    50401 gaacaggaga ttgccagcta ctacgaacaa aacaaaaaca atttcatgac gccggaacaa
    50461 ttccgcgtga gttacatcaa gctggatgcc gcaacgatgc agcaaccggt tagcgatgcg
    50521 gatatccaga gctactacga tcagcatcag gatcaattca cccagccgca gcgtacccgc
    50581 tacagcatca tccagaccaa aactgaagat gaagcgaaag cggtacttga tgagctgaat
    50641 aaaggcggtg attttgctgc attagccaaa gaaaaatctg ccgatattat ctctgcccgt
    50701 aacggcggcg atatgggttg gttagaagat gccactatcc ccgacgaact gaaaaatgct
    50761 ggtctgaaag aaaaaggcca actgtctggt gtcatcaaat cttcggtcgg tttcctgatt
    50821 gtacgtctgg acgacattca gccagcgaaa gtgaaatcgt tagacgaagt acgtgacgac
    50881 attgcggcga aagtgaaaca cgaaaaagcc ctcgatgcgt actatgcgct gcagcagaaa
    50941 gtgagcgatg cggcaagcaa cgacaccgag tctctggccg gtgcagagca agctgccggc
    51001 gttaaagcca ctcagacggg ttggttcagc aaagataacc tgccggaaga gttgaacttc
    51061 aagccggttg ccgacgctat ctttaacggc ggtctggtag gtgaaaacgg cgcgccgggc
    51121 atcaactctg acatcatcac cgtagacggc gaccgtgcat tcgtgctgcg catcagcgag
    51181 cacaaaccgg aagcggtgaa accgttggca gatgttcagg aacaagttaa ggcactggtt
    51241 cagcacaaca aagctgaaca acaggcgaaa gtggatgctg agaaactgct ggttgatttg
    51301 aaagccggca aaggtgcgga agctatgcag gctgccggtc tgaaatttgg cgagccgaaa
    51361 accttaagcc gttccggtcg tgacccgatt agccaggcgg cgtttgcact gccactgcca
    51421 gcgaaagaca aaccgagcta cggtatggcg accgatatgc aaggtaatgt ggttctgctg
    51481 gcgctggatg aagtgaaaca aggttcaatg ccggaagatc agaaaaaagc gatggtgcag
    51541 ggtatcaccc agaacaacgc acaaatcgtc tttgaagctc tgatgagtaa cctgcgtaaa
    51601 gaggcgaaaa tcaaaattgg cgatgcgctg gaacagcaat aatcctgaag ccgcctcgca
    51661 aaaaaatgcg ttgcagctgt aacaagaaaa ggtcgctttc gcggcctttt ccatttctga
    51721 acattgccat ttgtttactg ttttcactgc cgttaaggtg attccactgt taacaaacaa
    51781 ggagaaaaca gtatgaaaca cggaattaaa gcactgctca ttaccctgtc cctggcctgt
    51841 gccggaatgt ctcatagcgc gctggcggca gcttctgtgg cgaaaccgac ggcggtagaa
    51901 accaaagcgg aagctcctgc agcacaaagt aaagcagcag taccggcgaa agccagtgac
    51961 gaagaaggca cccgggtcag cattaataat gccagcgcgg aagagctagc ccgcgcgatg
    52021 aatggcgttg gcctgaagaa agcgcaggcg attgtcagtt atcgcgaaga gtacggtccg
    52081 tttaaaacag tggaggatct aaagcaggtg ccggggatgg gcaattcgct ggtggaacgt
    52141 aatctggcgg tattaaccct gtaattaatt tgcatagtgg caattttttg ccagactgaa
    52201 gaggtcatac cagttatgac ctctgtactt ataacaacaa cgtaaggtta ttgcgctatg
    52261 caaacacaaa taaaagttcg tggatatcat ctcgacgttt accagcacgt caacaacgcc
    52321 cgctaccttg aatttctcga agaagcccgc tgggatgggt tggaaaatag cgacagtttt
    52381 cagtggatga cggcccataa catcgccttc gtcgtggtca atatcaatat taactatcgt
    52441 cgcccagcgg tattaagtga cctgttaact attaccagtc agttgcagca attaaacggt
    52501 aaaagcggca tcttaagcca ggtcattaca ctggagccgg aagggcaggt ggtagcggat
    52561 gcgcttatta cgtttgtttg tattgatctt aaaacgcaga aagcattagc tctggaaggg
    52621 gaattgcgcg aaaagctgga gcagatggtt aagtaaacgt tttgtggtgc cggatgctca
    52681 agccgcatcc ggcgacaccc ggaataatta cctcaacccg gttttctgct tcatcgctgc
    52741 catcaccgtc ggtttatcgg ccagataatg attcaaaccg ttggcgcgta aattacatgc
    52801 cgcacaatga ccgcaaccgt cgcctttaat gccgttatag caggtcaacg tttcgttacg
    52861 gactaaatcc agtttgccgt aataatctgc cagcgcccag gtttccgctt tatcaatcca
    52921 catcagcggc gtttcaaaac gaatatcttt cgccatgccc aaactgacgg catggtttag
    52981 tgctttcaca aactcatcgc ggcaatccgg gtagccggag aaatccgttt cacagacgcc
    53041 ggtaattacg gcttctgctt ttacctgata cgcatatatt gccgccagcg tcaggaacaa
    53101 aatattacgc cctgggacaa acgtattcgg gatgccatcg gcttcaggtt cataatcagg
    53161 caccggaatg ctgtcacgtg tcaggctgct gaccgccagc tcgttgagca gcgttacatc
    53221 aagaacctta tgcgcgcgtg ctcccagttt cagcgccagt tcgcgtgcca cgtcgatttc
    53281 tgcgcgatgt cgctgaccgt aatcgaacgt cacgcaatgg acttcatcat attgttgtaa
    53341 tgcctgcacc agacaggtgg tggaatcctg gcctccactg aacacaacga cagcacgttt
    53401 catagataat cctgcttgaa caataaaagc gttatggtaa cgcctgcgat taacccggac
    53461 cagctattca ttgcgacggc gcgggaagcc aggcttcggt aaattcaaac cagccgcgcg
    53521 gtgtcagtcg cacaccgttc acgccgggag gggcactaat gcgatagtga tagttgaaca
    53581 gcggcgtcag cgtcgcgtct gccattaact ggctaaaaac cgctttcagg gcattaaatc
    53641 ggttttcctc atcaggcatt acttgcaccg cgtccagcgt cgattgcaga tgtgcatatg
    53701 ctggagcgtc gaaaacatgt ggccatagtg gatcgcaacg tagccattgc tccagagtat
    53761 attccggtgc ttcgccaatt aatctgtcgc ccatcatgag gtctgcgtgt gccagtaggg
    53821 tcgtgtcgtc ccagtttttt gcgttatgaa aaataattgt gagttcacag ccttccgctg
    53881 ccagtgtcgc ctgtaggcgt tctgccatgg tatgaagttc tatcggtagg tgataaacca
    53941 gcgtcaaggt tttcggtagt ttgacttcat ccggtacttg ccagtgcgga atagtccagc
    54001 ctggcagtaa tgcatgactg gcggtgatca ggttttctcc gacttctaac gtttgtaata
    54061 aaccggattg atgaataatg gagatcactt ttcgcgcctg ccagagggag agtcggggac
    54121 ttttgcgcaa cgttaaatag caaaaaccta aactgatgcc actactgacc tggctgaccc
    54181 gttgcagctc ctccggtttg ccgatggtga tttgcacggg atgccgacaa ctggttccca
    54241 aatctttttc gaaaagcggc ggagttatcc agtactcaac cgctttaagc agcggatgac
    54301 gcaaatggta ataatcatgg ctctccaggc gcaccagctc cgctgtgaat tgtgttaagc
    54361 gaaaaggacc agtgccgatc agtgggaatt gcggatgcgc cagatggctg caatagctcg
    54421 ccagccggtg cgcaagccag taatcggggc gatgtaaaaa gaaggtcaga cactgcggat
    54481 gggtgacttc aatacgcttc acgctaataa ataattgatc cagtgctggc agttgtaaca
    54541 gcatcaataa tcgctggtgt aagtgtgagg cttttactgc atcgccgtta tgccagtgta
    54601 gggttgaacg aagataaaag tcccagcgta acccgtcagt agaggtttcc cagtgatgcg
    54661 ctaaatcgcc aatcgggcgc tgagtattat tatcgaagcg ggtcaggccg gaaaatatct
    54721 gcccggcgag atgctgctcg gcacggccgg gcaaaaagcc tggttgtagc ggttcgagcg
    54781 ggcgatagta gggaatacgc aacgtgggtg tatcgttttg ccattgtccg cccataaacg
    54841 gctgtaacag agtgcgtagc tcacctgggg ccagttgcgc cagctccagc acatcttgct
    54901 gctttccggt ttccagtgcc tgttccatca tcgcattgcg tagcgattcc ggcgtgacca
    54961 gaaagcgtaa ttgtccgcgc tttccgcgtc ctgactgcgc ctgccactcc agccatcccg
    55021 cctcctgtgc ctgacgcaac agcgtacgaa catggcgttc gctgcaaaaa cagcgttcgg
    55081 ccagttcgct gacggtgacg gtttgcggct ttccggctga aggttgccac agacgttgat
    55141 actggttaag acggttgagc aatcgcatat aaacccggaa caatattatt taactattca
    55201 ctattacttc cgtatatatc aggtgatact caatctccat taaccgtgtc acagagtgga
    55261 gaaagaaatg gctcgtctgg cagcatttga tatggatggc actttattga tgcctgacca
    55321 tcatttaggt gagaaaaccc tctctacttt ggcgcgactg cgtgaacgcg acattaccct
    55381 cacttttgcc acggggcgtc atgcgctgga gatgcagcat attctcgggg cgctatcgct
    55441 ggatgcatat ttgattaccg gcaacggaac gcgcgtgcat tctctggaag gtgaactttt
    55501 acatcgtgat gatttacctg cggatgtcgc ggagctggtg ctgtatcagc aatgggatac
    55561 ccgagccagc atgcatatct tcaatgacga cggttggttt accgggaaag agatccctgc
    55621 gttgttgcag gcatttgtct atagcggttt tcgttatcag ataatcgatg tcaaaaaaat
    55681 gccactcggc agcgtcacca agatctgctt ctgtggcgat cacgacgatc ttacacgctt
    55741 gcagatccag ctatacgaag cattaggcga gcgtgcacat ttgtgttttt ccgccacgga
    55801 ttgcctcgaa gtgctgccgg tgggctgcaa taaaggcgct gcattgacgg tgctgaccca
    55861 acatctaggt ttatcgttgc gcgattgcat ggcctttggt gatgcgatga acgatcgcga
    55921 aatgttaggc agcgtcggta gcgggtttat tatgggcaat gcgatgccgc aactgcgcgc
    55981 ggagctcccg catttaccgg tgattggaca ttgccgaaat caggctgtct ctcactattt
    56041 gacgcactga ctggactatc cacatctacc ttattccccc gaataatgag atcccttcca
    56101 gcaccgggca attgcccggt tttttttgcg ttgaatttgt cattttgtgc cgtggtgttt
    56161 aaaccgcaca gaataaattg tcgtgatttc acctttaaaa tagaattaaa agagaaaaaa
    56221 attctctgtg gaagggctat gttagataaa attgaccgta agctgctggc cttactgcag
    56281 caggattgca ccctctcttt gcaggcactg gctgaagccg ttaatctgac aaccacccct
    56341 tgctggaagc gcctgaaacg gctggaggac gacggtatcc ttatcggcaa agtcgccctg
    56401 ctggatccgg aaaaaatagg cctcggcctg accgcctttg tgctgataaa aacgcaacat
    56461 cacagtagcg aatggtattg ccgctttgtc acggtggtta ccgaaatgcc agaagtgctg
    56521 gggttctggc gcatggctgg tgaatacgat tatctgatgc gcgtccaggt tgccgacatg
    56581 aaacgctacg acgagtttta taagcgtctg gtaaacagcg tgccggggct gtcggacgtc
    56641 acttccagct tcgcgatgga acagattaaa tacaccactt ctttacccat cgaataaata
    56701 tccagaatca ggtcaggaca caacgcgtgc gattatttgc tcaattaagc tggtatttcc
    56761 gtcgggaatg gcgtcgctat ctcggggctg tcgccttgct tgtcattatc gcgatgctgc
    56821 aactggttcc gccaaaagtg gttggtattg ttgtcgatgg cgtgacagaa caacacttta
    56881 ctaccgggca gatcctgatg tggatcgcca ccatggtgct gattgccgtt gtggtttatt
    56941 tcctgcgtta cgtctggcgg gtattgctgt ttggtgcgtc ttatcaactg gctgttgaac
    57001 tgcgtgaaga ttattaccgt cagctaagcc ggcagcatcc tgagttttac ctgcgtcatc
    57061 gcacgggtga cctcatggct cgtgcgacca atgacgtcga tcgcgtcgtg tttgcagccg
    57121 gagaaggggt gctgacgctg gtggattcac tggtgatggg ctgcgctgtg ttgattatga
    57181 tgtctacgca aattagctgg cagttgacct tatttgccct gttgccgatg ccagtgatgg
    57241 cgatcatgat caagcgcaac ggcgatgcct tgcatgaacg ctttaagctg gcacaggcgg
    57301 cgttttctag tcttaatgac cgcacccagg aaagcctcac cagtatccgc atgatcaaag
    57361 cctttggtct ggaagatcgc cagtcggcgt tatttgccgc ggatgccgaa gataccggca
    57421 aaaaaaacat gcgggtggcg cgtattgatg ctcgtttcga cccgaccatc tatatcgcga
    57481 ttggtatggc gaacttgctg gcgattggcg gcggtagttg gatggtggtg cagggcagtt
    57541 taacgctggg ccagctcacc agttttatga tgtatttagg tctgatgatt tggccaatgc
    57601 tggcgctggc atggatgttt aacattgtgg aacgtggtag tgctgcatac agccgtattc
    57661 gcgcgatgct ggcggaagcg ccggtggtga acgatggtag cgaacccgtg ccggaagggc
    57721 gtggcgaact ggatgtaaat attcaccagt tcacgtatcc gcagactgac catcctgcgc
    57781 tggaaaacgt caatttcgcc ctgaaacccg gtcagatgct gggtatctgc gggccgactg
    57841 gttccggcaa aagtaccctg ttgtcgctca ttcagcgtca tttcgacgtc agcgaggggg
    57901 atattcgctt tcatgatatt cctctgacga agttacaact cgatagctgg cgtagccgcc
    57961 tggcggtagt tagccagaca ccgttccttt tttccgacac cgtagcgaac aacatcgcgt
    58021 tgggttgccc gaatgccacc cagcaagaga ttgagcatgt cgcgcggtta gccagcgtac
    58081 atgacgatat tttgcgtcta ccgcaaggtt acgatacaga agtgggcgag cgcggcgtga
    58141 tgctttccgg tgggcaaaaa cagcgtatct ccattgctcg agcgttatta gtcaacgcgg
    58201 aaatcctcat ccttgatgat gcgctttcgg cggtggacgg acgcacagag caccagaacc
    58261 tgcataacct gcgtcagtgg ggacagggaa gaacggtaat catcagtgcc catcgccttt
    58321 cggcactgac ggaagccagt gaaaatgtaa tgaacgcatc
//
LOCUS       DADMJB010000007        47217 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.007, whole genome shotgun sequence.
ACCESSION   DADMJB010000007 DADMJB010000000
VERSION     DADMJB010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 47217)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 47217)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..47217
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.007"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            27..764
                     /locus_tag="JN078_000414"
     CDS             27..764
                     /locus_tag="JN078_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone"
                     /protein_id="HAY9039729.1"
                     /translation="MPARHLYFIMTNTWNRLALLIFAVLSLLVAGELRAGVVVGGTRF
                     IFPADRESISILLANTSQESWLINSKINRPTRWAGGKASTVPAPLLAAPPLILLKPGT
                     TGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPG
                     DPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNAGVVPPKSQRQTSWCQ
                     AIAPCHVAWRAINDYDGLSAKKEQNLP"
     gene            875..1885
                     /gene="pyrD"
                     /locus_tag="JN078_000415"
     CDS             875..1885
                     /gene="pyrD"
                     /locus_tag="JN078_000415"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HAY9039730.1"
                     /translation="MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPA
                     KPVNCMGLTFKNPLGLAAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFR
                     LVDAEGLINRMGFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICME
                     KIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKI
                     APDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKST
                     EIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVT
                     HI"
     gene            2059..2601
                     /gene="zapC"
                     /locus_tag="JN078_000416"
     CDS             2059..2601
                     /gene="zapC"
                     /locus_tag="JN078_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415466.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapC"
                     /protein_id="HAY9039731.1"
                     /translation="MRIKPDDNWRWYYDEEHDRMMLDLANGMLFRSRFARKMLTPDAF
                     SPAGFCVDDAALYFSFEEKCRDFNLSKEQKAELVLNVLVAIRYLKPQMPKSWHFVSHG
                     EMWVPMPGDAACVWLSDTHEQVNLLVVESGENAALCLLAQPCVVIAGRAMQLGDAIKI
                     MNDRLKPQVNVDSFSLEQAV"
     gene            complement(2598..3707)
                     /gene="ycbX"
                     /locus_tag="JN078_000417"
     CDS             complement(2598..3707)
                     /gene="ycbX"
                     /locus_tag="JN078_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-N-hydroxylaminopurine resistance protein YcbX"
                     /protein_id="HAY9039732.1"
                     /translation="MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGT
                     FITARQFPQMVRFTPSPVHDGLHLTAPDGSSAYVRFADFATQDAPTEVWGTHFTARIA
                     PDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQ
                     RCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQ
                     KHPAGEPLKTLQSFRTAQDNGDVDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAAA
                     ADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQ
                     ILEGEVSPLKKSAMGDDGTILCCSCVPKTALKLAR"
     gene            3951..6059
                     /gene="rlmKL"
                     /locus_tag="JN078_000418"
     CDS             3951..6059
                     /gene="rlmKL"
                     /locus_tag="JN078_000418"
                     /EC_number="2.1.1.173"
                     /EC_number="2.1.1.264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 23S rRNA
                     (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA
                     (guanine(2445)-N(2))-methyltransferase RlmL"
                     /protein_id="HAY9039733.1"
                     /translation="MNSLFASTARGLEELLKTELENLGAVECQVVQGGVHFKGDTRLV
                     YQSLMWSRLASRIMLPLGECKVYSDLDLYLGVQAINWTEMFNPGATFAVHFSGLNDTI
                     RNSQYGAMKVKDAIVDAFTRKNLPRPNVDRDAPDIRVNVWLHKETASIALDLSGDGLH
                     LRGYRDRAGIAPLKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGL
                     HRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNAR
                     LAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK
                     NQFGGWNLSLFSASPDLLSCLQLRADKQYKAKNGPLDCVQKNYHVAESTPDSKPAMVA
                     EDYANRLRKNLKKFEKWARQEGIECYRLYDADLPEYNVAVDRYSDWVVVQEYAPPKTI
                     DAHKARQRLFDIIAATISVLGIAPNKLVLKTRERQKGKNQYQKLGEKGEFLEVTEYNA
                     HLWVNLTDYLDTGLFLDHRIARRMLGQMSKGKDFLNLFSYTGSATVHAGLGGALSTTT
                     VDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKR
                     MEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEITQKT
                     LSQDFARNRQIHNCWLITAA"
     gene            6071..7978
                     /locus_tag="JN078_000419"
     CDS             6071..7978
                     /locus_tag="JN078_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAY9039734.1"
                     /translation="MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKST
                     LMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYH
                     DISRLVMNDPSEKNLNELAKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGG
                     WLRKAALGRALVSNPRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRN
                     MATRIVDLDRGKLVTYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKA
                     RRTRNEGRVRALKAMRRERGERREVMGTAKMQVEEASRSGKIVFEMEDVCYQVDGKQL
                     VKDFSAQVLRGDKIVLIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRA
                     ELDPDKTVMDNIAEGKQEVMVNGKPRHVLSYLQDFLFHPKRAMTPVRALSGGERNRLL
                     LARLFLKPSNLLILDEPTNDLDVETLELLEELIDSYQGTVLLVSHDRQFVDNTVTECW
                     IFEGGGKIGRYVGGYHDARGQQEQYVALKQPAVKKTEEAAAAKAETVKRSSSKLSYKL
                     QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER
                     WEYLEALKNGG"
     gene            8108..9361
                     /gene="pqiA"
                     /locus_tag="JN078_000420"
     CDS             8108..9361
                     /gene="pqiA"
                     /locus_tag="JN078_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiA"
                     /protein_id="HAY9039735.1"
                     /translation="MCEHHHAAKHILCSQCDMLVALPRLEHGQKAACPRCGTTLTVAW
                     DAPRQRPTAYALAALFMLLLSNLFPFVNMNVAGVTSEITLLEIPGVLFSEDYASLGTF
                     FLLFVQLVPAFCLITILLLVNRAELPVRLKEQLARVLFQLKTWGMAEIFLAGVLVSFV
                     KLMAYGSIGVGSSFLPWCLFCVLQLRAFQCVDRRWLWDDIAPMPELRQPLKPGVTGIR
                     QGLRSCSCCTAILPADEPVCPRCSTKGYVRRRNSLQWTLALLVTSIMLYLPANILPIM
                     VTDLLGSKMPSTILAGVILLWSEGSYPVAAVIFLASIMVPTLKMIAIAWLCWDAKGHG
                     KRDSERMHLIYEVVEFVGRWSMIDVFVIAVLSALVRMGGLMSIYPAMGALMFALVVIM
                     TMFSAMTFDPRLSWDRQPESEHEES"
     gene            9366..11006
                     /gene="pqiB"
                     /locus_tag="JN078_000421"
     CDS             9366..11006
                     /gene="pqiB"
                     /locus_tag="JN078_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706874.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intermembrane transport protein PqiB"
                     /protein_id="HAY9039736.1"
                     /translation="MESNNGEAKIQKVKNWSPVWIFPIVTALIGAWVLFYHYSHQGPE
                     VTLITANAEGIEGGKTTIKSRSVDVGVVESATLADDLTHVEIKARLNSGMEKLLHKDT
                     VFWVVKPQIGREGISGLGTLLSGVYIELQPGAKGSKMDKYDLLDSPPLAPPDAKGIRV
                     ILDSKKAGQLSPGDPVLFRGYRVGSVETSTFDTQKRNISYQLFINAPYDRLVTSNVRF
                     WKDSGIAVDLTSAGMRVEMGSLTTLLSGGVSFDVPEGLDLGQPVAPKTAFVLYDDQKS
                     IQDSLYTDHIDYLMFFKDSVRGLQPGAPVEFRGIRLGTVSKVPFFAPNMRQTFNDDYR
                     IPVLIRIEPERLKMQLGENTDVVEHLGELLKRGLRGSLKTGNLVTGALYVDLDFYPNT
                     PAITGIREFNGYQIIPTVSGGLAQIQQRLMEALDKINKLPLNPMIEQATSTLSESQRT
                     MKNLQTTLDSMNKILASQSMQQLPTDMQSTLRELNRSMQGFQPGSAAYNKMVADMQRL
                     DQVLRELQPVLKTLNEKSNALVFEAKDKKDPEPKRAKQ"
     gene            11003..11566
                     /gene="pqiC"
                     /locus_tag="JN078_000422"
     CDS             11003..11566
                     /gene="pqiC"
                     /locus_tag="JN078_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HAY9039737.1"
                     /translation="MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNR
                     LLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGW
                     VVASQPLGSVQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDG
                     YDEMVKVLAGVWSQEAASIAQEIKRLP"
     gene            11822..11989
                     /gene="rmf"
                     /locus_tag="JN078_000423"
     CDS             11822..11989
                     /gene="rmf"
                     /locus_tag="JN078_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome modulation factor"
                     /protein_id="HAY9039738.1"
                     /translation="MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGW
                     REAMADRVVMA"
     gene            complement(12059..12577)
                     /gene="fabA"
                     /locus_tag="JN078_000424"
     CDS             complement(12059..12577)
                     /gene="fabA"
                     /locus_tag="JN078_000424"
                     /EC_number="4.2.1.59"
                     /EC_number="5.3.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014915875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-hydroxydecanoyl-ACP
                     dehydratase/trans-2-decenoyl-ACP isomerase"
                     /protein_id="HAY9039739.1"
                     /translation="MVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMT
                     ETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEG
                     KGRALGVGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASD
                     LKVGLFQDTSAF"
     gene            complement(12646..14406)
                     /locus_tag="JN078_000425"
     CDS             complement(12646..14406)
                     /locus_tag="JN078_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lon protease family protein"
                     /protein_id="HAY9039740.1"
                     /translation="MTITKLAWRDLVPDTDSYQEIFAQPHLIDENDPLFSDTQPRLQF
                     ALEQLLHTRASSSFMLAKAPEESEYLNLIADAARTLQSDAGQLVGDHYEVSGHSIRLR
                     HAVSADDNFATLTQVVAADWVEAEQLFGCLRQFNGDITLQPGLVHQANGGILIISLRT
                     LLAQPLLWMRLKNIVNRERFDWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQE
                     MEPELSEQAIYSEFEDTLQIVDAESVSQWCRWVTFTARHNHLPAPGADAWPVLIREAA
                     RYTGEQETLPLSPQWILRQCKEVASLCDGDTFSGEQLNLMLQQREWREGFLAERMQDE
                     ILQEQILIETEGERIGQINALSVIEFPGHPRAFGEPSRISCVVHIGDGEFTDIERKAE
                     LGGNIHAKGMMIMQAFLMSELQLEQQIPFSASLTFEQSYSEVDGDSASMAELCALISA
                     LADVPVNQSIAITGSVDQFGRAQPVGGLNEKIEGFFAICQQRELTGKQGVIIPTANVR
                     HLSLHSELVKAVEEGKFTIWAVDDVTDALPLLLNLVWDGEGQTTLMQTIQERIAQASQ
                     QEGRHRFPWPLRWLNWFIPN"
     gene            14592..15044
                     /gene="matP"
                     /locus_tag="JN078_000426"
     CDS             14592..15044
                     /gene="matP"
                     /locus_tag="JN078_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ter protein MatP"
                     /protein_id="HAY9039741.1"
                     /translation="MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVL
                     LSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQ
                     RLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKLDLQALLGKE"
     gene            complement(15120..16160)
                     /gene="ompA"
                     /locus_tag="JN078_000427"
     CDS             complement(15120..16160)
                     /gene="ompA"
                     /locus_tag="JN078_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpA"
                     /protein_id="HAY9039742.1"
                     /translation="MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGF
                     INNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTA
                     KLGYPITDDLDIYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRL
                     EYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKHFTLK
                     SDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSER
                     RAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV
                     KGIKDVVTQPQA"
     gene            complement(16517..17026)
                     /gene="sulA"
                     /locus_tag="JN078_000428"
     CDS             complement(16517..17026)
                     /gene="sulA"
                     /locus_tag="JN078_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division inhibitor SulA"
                     /protein_id="HAY9039743.1"
                     /translation="MYTSGYAHRSSSFSSAASKIARVSTENTTAGLISEVVYREDQPM
                     MTQLLLLPLLQQLGQQSRWQLWLTPQQKLSREWVQASGLPLTKVMQISQLSPCHTVES
                     MVRALRTGNYSVVIGWLADDLTEEEHAELVDAANEGNAMGFIMRPVSASSHATRQLSG
                     LKIHSNLYH"
     gene            17245..17874
                     /gene="sxy"
                     /locus_tag="JN078_000429"
     CDS             17245..17874
                     /gene="sxy"
                     /locus_tag="JN078_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRP-S regulon transcriptional coactivator Sxy"
                     /protein_id="HAY9039744.1"
                     /translation="MKSLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVDDTVFAMVS
                     DGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKLVRLSKYS
                     LDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
                     SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE"
     gene            complement(17837..19999)
                     /gene="yccS"
                     /locus_tag="JN078_000430"
     CDS             complement(17837..19999)
                     /gene="yccS"
                     /locus_tag="JN078_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309071.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01666 family membrane protein"
                     /protein_id="HAY9039745.1"
                     /translation="MAFMLSPLLKRYTWNSAWLYYARIFIALCGTTAFPWWLGDVKLT
                     IPLTLGMVAAALTDLDDRLAGRLRNLIITLFCFFIASASVELLFPWPWLFAIGLTLST
                     SGFILLGGLGQRYATIAFGALLIAIYTMLGTSLYEHWYQQPMYLLAGAVWYNVLTLIG
                     HLLFPVRPLQDNLARCYEQLARYLELKSRMFDPDIEDESQAPLYDLALANGLLMATLN
                     QTKLSLLTRLRGDRGQRGTRRTLHYYFVAQDIHERASSSHIQYQTLREHFRHSDVLFR
                     FQRLMSMQGQACQQLSRCILLRQPYQHDPHFERAFTHIDAALERMRDNGAPADLLKTL
                     GFLLNNLRAIDAQLATIESEQAQALPHNNDENELADDSPHGLSDIWLRLSRHFTPESA
                     LFRHAVRMSLVLCFGYAIIQITGMHHGFWILLTSLFVCQPNYNATRHRLKLRIIGTLV
                     GIAIGIPVLWFVPSLEGQLVLLVITGVLFFAFRNVQYAHATMFITLLVLLCFNLLGEG
                     FEVALPRVIDTLIGCAIAWAAVSYIWPDWQFRNLPRMLERATEANCRYLDAILEQYHQ
                     GRDNRLAYRIARRDAHNRDAELASVVSNMSSEPNVTPQIREAAFRLLCLNHTFTSYIS
                     ALGAHREQLTNPEILAFLDDAVCYVDDALHHQPADEERVNEALASLKQRMQQLEPRAD
                     SKEPLVVQQVGLLIALLPEIGRLQRQITQVPQETPVSA"
     gene            complement(20009..20455)
                     /locus_tag="JN078_000431"
     CDS             complement(20009..20455)
                     /locus_tag="JN078_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YccF domain-containing protein"
                     /protein_id="HAY9039746.1"
                     /translation="MRTVLNILNFVLGGFATTLGWLLATLVSIVLIFTLPLTRSCWEI
                     TKLSLVPYGNEAIHVDELNPAGKNVLLNTGGTVLNIFWLIFFGWWLCLMHIATGIAQC
                     ISIIGIPVGIANFKIAAIALWPVGRRVVSVETAQAAREANARRRFE"
     gene            20578..22632
                     /gene="helD"
                     /locus_tag="JN078_000432"
     CDS             20578..22632
                     /gene="helD"
                     /locus_tag="JN078_000432"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase IV"
                     /protein_id="HAY9039747.1"
                     /translation="MELKATTLGKRLAQHPYDRAVILNAGIKVSGDRHEYLIPFNQLL
                     AIHCKRGLVWGELEFVLPDEKVVRLHGTEWGETQRFYHHLDAHWRRWSGEMSEIASGV
                     LRQQLDLIATRTGENKWLTREQTSGVQQQIRQALSALPLPVNRLEEFDNCREAWRKCQ
                     AWLKDIESARLQHNQAYTEAMLTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGA
                     GSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRERLHTEDITARTFH
                     ALALHIIQQGSKKVPIVSKLENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQ
                     WSVPEGNFWDDEKLQRRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLM
                     APLLKAWKGALKAENAVDFSGLIHQAIVILEKGRFISPWKHILVDEFQDISPQRAALL
                     AALRKQNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENFGEGERCDLDTTYRFNSRI
                     GKVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDESQLDALLDKLSGYAKPEERILIL
                     ARYHHMRPASLEKAATRWPKLQIDFMTIHASKGQQADYVIIVGLQEGSDGFPAAARES
                     IMEEALLPPVEDFPDAEERRLMYVALTRARHRVWALFNKENPSPFVEILKNLDVPVAR
                     KP"
     gene            complement(22664..23122)
                     /gene="mgsA"
                     /locus_tag="JN078_000433"
     CDS             complement(22664..23122)
                     /gene="mgsA"
                     /locus_tag="JN078_000433"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415483.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HAY9039748.1"
                     /translation="MELTTRTLPARKHIALVAHDHCKQMLMSWVERHQPLLEQHVLYA
                     TGTTGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDV
                     KALLRLATVWNIPVATNVATADFIIQSPHFNDAVDILIPDYQRYLADRLK"
     gene            complement(23218..23880)
                     /locus_tag="JN078_000434"
     CDS             complement(23218..23880)
                     /locus_tag="JN078_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2057 family protein"
                     /protein_id="HAY9039749.1"
                     /translation="MKTGIVTTLIALCLPVSVFATTLRLSTDVDLLVLDGKKVSSSLL
                     RGADSIELDNGPHQLVFRVEKTIHLSNSEERLYISPPLVVSFNTQLINQVNFRLPRLE
                     NEREANHFDAAPRLELLDGDATPIPVKLDILAITSTAKTIDYEVEVERYNKSAKRASL
                     PQFATMMADDSTLLSGVSELDAIPPQSQVLTEQRLKYWFKLADPQTRNTFLQWAEKQP
                     SS"
     gene            24053..24466
                     /locus_tag="JN078_000435"
     CDS             24053..24466
                     /locus_tag="JN078_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HAY9039750.1"
                     /translation="MKETDIAGILTSTHTIALVGASDKPDRPSYRVMKYLLDQGYHVI
                     PVSPKVAGKTLLGQQGYGTLADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWMQL
                     GVINEQAAVLARDAGLNVVMDRCPAIEIPRLGLAK"
     gene            complement(24511..24828)
                     /gene="hspQ"
                     /locus_tag="JN078_000436"
     CDS             complement(24511..24828)
                     /gene="hspQ"
                     /locus_tag="JN078_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock protein HspQ"
                     /protein_id="HAY9039751.1"
                     /translation="MIASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVND
                     ELRAAPWYHVVMEDDNGLPVHTYLAEAQLSSELQDEHPEQPSMDELAQTIRKQLQAPR
                     LRN"
     gene            complement(24886..26076)
                     /gene="rlmI"
                     /locus_tag="JN078_000437"
     CDS             complement(24886..26076)
                     /gene="rlmI"
                     /locus_tag="JN078_000437"
                     /EC_number="2.1.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415487.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytosine(1962)-C(5))-methyltransferase
                     RlmI"
                     /protein_id="HAY9039752.1"
                     /translation="MSVRLVLAKGREKSLLRRHPWVFSGAVARMEGKASLGETIDIVD
                     HQGKWLARGAYSPASQIRARVWTFDPSESIDIAFFSRRLQQAQKWRDWLAQKDGLDSY
                     RLIAGESDGLPGITIDRFGNFLVLQLLSAGAEYQRAALVSALQTLYPECAIYDRSDVA
                     VRKKEGMELTLGLVTGELPPALLPIEEHGMKLLVDIQHGHKTGYYLDQRDSRLATRRY
                     VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV
                     RDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGI
                     LLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEGLYLKGFA
                     CRVM"
     gene            26171..26449
                     /gene="yccX"
                     /locus_tag="JN078_000438"
     CDS             26171..26449
                     /gene="yccX"
                     /locus_tag="JN078_000438"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HAY9039753.1"
                     /translation="MSKVCIIAWVYGRVQGVGFRYTTQYEAKRLGLTGYAKNLDDGSV
                     EVVACGEEGQVEKLMQWLKSGGPRSARVERVLSEPHHPSGELTDFRIR"
     gene            complement(26446..26775)
                     /gene="tusE"
                     /locus_tag="JN078_000439"
     CDS             complement(26446..26775)
                     /gene="tusE"
                     /locus_tag="JN078_000439"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309080.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusE"
                     /protein_id="HAY9039754.1"
                     /translation="MLIFEGKEIETDTEGYLKESSQWSEPLAVVIAENEGISLSPEHW
                     EVVRFVRDFYLEFNTSPAIRMLVKAMANKFGEEKGNSRYLYRLFPKGPAKQATKIAGL
                     PKPVKCI"
     gene            complement(26866..27525)
                     /gene="yccA"
                     /locus_tag="JN078_000440"
     CDS             complement(26866..27525)
                     /gene="yccA"
                     /locus_tag="JN078_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000375124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease modulator YccA"
                     /protein_id="HAY9039755.1"
                     /translation="MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTV
                     LMLPSPGLILTLVGMYGLMFLTYKTANKPTGIISAFAFTGFLGYILGPILNTYLSAGM
                     GDVIAMALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPAL
                     HLAISAVFILISSGAILFETSNIVHGGETNYIRATVSLYVSLYNIFVSLLSILGFASR
                     D"
     gene            complement(27732..27819)
                     /locus_tag="JN078_000441"
     tRNA            complement(27732..27819)
                     /locus_tag="JN078_000441"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(27783..27785),aa:Ser,seq:tga)
     gene            28246..29364
                     /gene="hyaA"
                     /locus_tag="JN078_000442"
     CDS             28246..29364
                     /gene="hyaA"
                     /locus_tag="JN078_000442"
                     /EC_number="1.12.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 1 small subunit"
                     /protein_id="HAY9039756.1"
                     /translation="MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAW
                     ALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAE
                     EVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTC
                     ASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVD
                     RMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS
                     STRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGV
                     VAAAVGVHAVASAVDQRRRHNQQPTETEHQPGNEDKQA"
     gene            29361..31154
                     /gene="hyaB"
                     /locus_tag="JN078_000443"
                     /pseudo
     CDS             29361..31154
                     /gene="hyaB"
                     /locus_tag="JN078_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415492.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase large subunit"
     gene            31173..31880
                     /gene="hyaC"
                     /locus_tag="JN078_000444"
     CDS             31173..31880
                     /gene="hyaC"
                     /locus_tag="JN078_000444"
                     /EC_number="1.12.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase b-type cytochrome subunit"
                     /protein_id="HAY9039757.1"
                     /translation="MQQKSDNVVSHYVFEAPVRIWHWLTVLCMAVLMVTGYFIGKPLP
                     SVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFVGNRYSRELFIVPVWRKSWW
                     QGVWYEIRWYLFLAKRPSADIGHNPIAQAAMFGYFLMSVFMIITGFALYSEHSQYAIF
                     APFRYVVEFFYWTGGNSMDIHSWHRLGMWLIGAFVIGHVYMALREDIMSDGTVISTMV
                     NGYRSHKFGKISNKECS"
     gene            31877..32464
                     /locus_tag="JN078_000445"
     CDS             31877..32464
                     /locus_tag="JN078_000445"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 1 maturation protease"
                     /protein_id="HAY9039758.1"
                     /translation="MSEQRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDG
                     GTQGLNLLGYVESASHLLILDAIDYGLEPGTLRTYAGERIPAYLSAKKMSLHQNSFSE
                     VLALADIRGHLPAHIALVGLQPAMLDDYGGSLSELAREQLLAAEQSALAQLAAWGSVP
                     QLANESRCLNYDCLSMENYEGVRLRQYRMTQEEQG"
     gene            32461..32859
                     /gene="hyaE"
                     /locus_tag="JN078_000446"
     CDS             32461..32859
                     /gene="hyaE"
                     /locus_tag="JN078_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase-1 operon protein HyaE"
                     /protein_id="HAY9039759.1"
                     /translation="MSNDTPFDALWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSD
                     PKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGVFRFPTTLVFTGGN
                     YRGVLNGIHPWAELINLMRGLVEPQQERAS"
     gene            32856..33713
                     /locus_tag="JN078_000447"
     CDS             32856..33713
                     /locus_tag="JN078_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein"
                     /protein_id="HAY9039760.1"
                     /translation="MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCA
                     HSPQVIALLNELQHQLSERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQA
                     DDSKSEIQEAIFCGLWRVRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPP
                     IDGLMNGLPLAHELLAHVRNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIG
                     YGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVC
                     QWLAEAAPT"
     gene            33847..35391
                     /gene="appC"
                     /locus_tag="JN078_000448"
     CDS             33847..35391
                     /gene="appC"
                     /locus_tag="JN078_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706901.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-II oxidase subunit 1"
                     /protein_id="HAY9039761.1"
                     /translation="MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTG
                     KTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWAFYSNYVGDIFGAPLAMEALM
                     AFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFD
                     IDTLRMEMTSFSELVFNPVSQVKFVHTVMAGYVTGAMFIMAISAWYLLRGRERDVALR
                     SFAIGSVFGTLAIIGTLQLGDSSAYEVAQVQPVKLAAMEGEWQTEPAPAPFHVVAWPE
                     QDQERNAFAIKIPALLGILATHSLDKPVPGLKNLMAETYPRLQRGRMAWLLMQEISQG
                     NREPHVLQAFRELEGDLGYGMLLSRYAPDMNHVTAAQYQAAMRGAIPQVAPVFWSFRI
                     MVGCGSLLLLVMLIALVQTLRGKIDQHRWVLKMALWSLPLPWIAIEAGWFMTEFGRQP
                     WAIQDILPTYSAHSALTTGQLAFSLIMIVGLYTLFLIAEVYLMQKYARLGPSAMQSEQ
                     PTQQQG"
     gene            35403..36539
                     /gene="appB"
                     /locus_tag="JN078_000449"
     CDS             35403..36539
                     /gene="appB"
                     /locus_tag="JN078_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HAY9039762.1"
                     /translation="MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDD
                     ERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPL
                     AFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGS
                     FWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLSSQLATKRAALLVMLCFLLA
                     GYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPL
                     LTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQL
                     TLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY"
     gene            36552..36644
                     /gene="cbdX"
                     /locus_tag="JN078_000450"
     CDS             36552..36644
                     /gene="cbdX"
                     /locus_tag="JN078_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-II oxidase subunit CbdX"
                     /protein_id="HAY9039763.1"
                     /translation="MWYLLWFVGILLMCSLSTLVLVWLDPRLKS"
     gene            36724..38022
                     /locus_tag="JN078_000451"
     CDS             36724..38022
                     /locus_tag="JN078_000451"
                     /EC_number="3.1.3.2"
                     /EC_number="3.1.3.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AppA family phytase/histidine-type acid
                     phosphatase"
                     /protein_id="HAY9039764.1"
                     /translation="MKAILIPFLSLLIPLTSQSAFAQSEPELKLESVVIVSRHGVRAP
                     TKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYFGHYQRQRLVADGLLAKKGCPQP
                     GQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNA
                     NVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQDESCSLTQALPS
                     ELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNTLLSLHNAQF
                     YLLQRTPEVARSRATPLLDLIMAALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGG
                     ALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNT
                     PPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIPACSL"
     gene            complement(38137..40317)
                     /gene="etk"
                     /locus_tag="JN078_000452"
     CDS             complement(38137..40317)
                     /gene="etk"
                     /locus_tag="JN078_000452"
                     /EC_number="2.7.10.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein kinase"
                     /protein_id="HAY9039765.1"
                     /translation="MTTKNMNTPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLI
                     AVAYSLLSTPIYQADTLVQVEQKQGNAILSGLSDMIPNSSPESAPEIQLLQSRMILGK
                     TIAELNLRDIVEQKYFPIVGRGWARLTKEKPGELAISWMHIPQLNGQDQQLTLTVGEN
                     GHYTLEGEEFTVNGMVGQRLEKDGVALTIADIKAKPGTQFVLSQRTELEAINALQETF
                     TVSERSKESGMLELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQL
                     PEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLY
                     KKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNR
                     QQELSISKSSAIGNVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLR
                     RGVEAPEQLEEHGISVYATIPMSEWLDKRTRLRKKNLFSNQQRHRTKNIPFLAVDNPA
                     DSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI
                     DADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSEL
                     LMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVS
                     LSMQRLEQAGVNIKGAILNGVIKRASTAYSYGYNYYGYSYSEKE"
     gene            complement(40337..40783)
                     /gene="etp"
                     /locus_tag="JN078_000453"
                     /gene_synonym="yccY"
     CDS             complement(40337..40783)
                     /gene="etp"
                     /locus_tag="JN078_000453"
                     /gene_synonym="yccY"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309165.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-tyrosine-phosphatase Etp"
                     /protein_id="HAY9039766.1"
                     /translation="MAQLKFNSILVVCTGNICRSPIGERLLRKRLPGVKVKSAGVHGL
                     VKHPADATAADVAANHGVSLEGHAGRKLTAEMARNYDLILAMESEHIAQVTAIAPEVR
                     GKTMLFGQWLEQKEIPDPYRKSQDAFEHVYGMLERASQEWAKRLSR"
     gene            complement(40771..41910)
                     /locus_tag="JN078_000454"
     CDS             complement(40771..41910)
                     /locus_tag="JN078_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HAY9039767.1"
                     /translation="MKKNIFKFSVLTLAVLSLTACTLVPGQNLSTRNKDVIELPDNQY
                     DLDKMVNIYPVTPGLIDQLRAKPIMSQANPELEQQIANYEYRIGIGDVLMVTVWDHPE
                     LTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGKTLTQVRNEITARLDSVIESPQ
                     VDVSVAAFRSQKAYVTGEVSKSGQQPITNIPLTIMDAINAAGGLTADADWRNVVLTQN
                     GVKTKVNLYALMQRGDLRQNKLLHPGDILFIPRNDDLKVFVMGEVGKQSTLKMDRSGM
                     TLAEALGNAEGMNQDVADATGIFVIRATQNKQNGKIANIYQLNAKDASAMILGTEFQL
                     EPYDIVYVTTAPLARWNRVISLLVPTISGVHDLTETSRWIQTWPN"
     gene            complement(41956..44052)
                     /locus_tag="JN078_000455"
     CDS             complement(41956..44052)
                     /locus_tag="JN078_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbH domain-containing protein"
                     /protein_id="HAY9039768.1"
                     /translation="MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQ
                     MPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGD
                     QSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMA
                     WGYAGNAGNITNPFCRVNDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPL
                     RLKLEYDGNNYQNDFAGKLPQASHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTN
                     FNDLRPALRDTPKPAYQPAPESEGLQYTTVANQLTALKYNAGFEAPEIQLRDKTLYMS
                     GQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAG
                     TAPGQSEQLQQQRVEAEDLSAFGRGYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGL
                     MSSARYWFTDHLLLDGGIFTNIYNNYDKFKSSLLPADSTLPRVRTHIRDYVRNDVYLN
                     NLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDASWALGVDVNYVKQRDWD
                     NMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKRFDSGVAVG
                     VWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRK
                     YQLYPMTAEREVPVGQ"
     gene            complement(44052..44798)
                     /locus_tag="JN078_000456"
     CDS             complement(44052..44798)
                     /locus_tag="JN078_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis GfcC family protein"
                     /protein_id="HAY9039769.1"
                     /translation="MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPMEN
                     VVQLVTQPQLRDRLWWPGALLTDSAAKAKALKDYQHVMAQLASWEAEADDDVAATIKS
                     VRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAG
                     QLPWQAGRSVTDYLQDHPRLAGADKNNVMVITPEGETVVAPVALWNKRHVDPPPGSQL
                     WLGFSAHVLPEKYADLNDQIVSVLTQRVPD"
     gene            complement(44795..45439)
                     /gene="gfcB"
                     /locus_tag="JN078_000457"
     CDS             complement(44795..45439)
                     /gene="gfcB"
                     /locus_tag="JN078_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein GfcB"
                     /protein_id="HAY9039770.1"
                     /translation="MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVADQQI
                     QALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQDNAMLVTHNGRLLKTVKLNNNLL
                     EVTNSGQDPLRNALAIKDGSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGRNV
                     LCNVWQEEVTSTRPEKQWQNTFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP"
     gene            complement(45546..45851)
                     /locus_tag="JN078_000458"
     CDS             complement(45546..45851)
                     /locus_tag="JN078_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415507.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine-rich inner membrane protein GfcA"
                     /protein_id="HAY9039771.1"
                     /translation="MKHKLSAILMAFMLTTPAAFAAPEATNGTEATTGTTGTTTTTTG
                     ATTTATTTGGVAAGAVGTATVVGVATAVGVATLAVVAANDSGDGGSHNTSTTTSTTR"
     gene            complement(46293..46505)
                     /gene="cspH"
                     /locus_tag="JN078_000459"
     CDS             complement(46293..46505)
                     /gene="cspH"
                     /locus_tag="JN078_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock-like protein CspH"
                     /protein_id="HAY9039772.1"
                     /translation="MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEV
                     LIPGLRVEFCRVNGLRGPTAANVYLS"
     gene            46791..47003
                     /gene="cspG"
                     /locus_tag="JN078_000460"
     CDS             46791..47003
                     /gene="cspG"
                     /locus_tag="JN078_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock protein CspG"
                     /protein_id="HAY9039773.1"
                     /translation="MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRT
                     LNENQKVEFSIEQGQRGPAAANVVTL"
     gene            47014..47202
                     /locus_tag="JN078_000461"
     CDS             47014..47202
                     /locus_tag="JN078_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HAY9039774.1"
                     /translation="MTQHLHFRCPCCHGSQYRTSAFDVTERNPLGAKCIFCKSTMITF
                     DNVTLQIRTDHAPLDFTK"
BASE COUNT        11625 a        11731 c        12413 g        11448 t
ORIGIN      
        1 tagcgatgtg cagtcgggta aagtgaatgc cagcgcgaca tttgtacttc attatgacta
       61 atacgtggaa cagattggcg ctcttgattt tcgccgtttt atcgctgctg gtggcgggtg
      121 aattgcgggc aggagtggtg gtcggcggaa cgcgatttat ctttccggca gacagagaat
      181 cgatatctat tttactggct aataccagtc aggaatcctg gctgattaac agtaaaatca
      241 accgcccaac gcgttgggcc ggggggaaag cgtcgacagt gccagcacca ttactggccg
      301 ctccgccact tattctcctg aagcccggta ctacaggcac gttgcgcttg ctgagaacgg
      361 aaagcgacat cttgcctgtg gatcgcgaaa cgctatttga gttaagcatt gccagcgtgc
      421 catccggcaa agttgaaaat cagagcgtaa aagtggcgat gcgctcggta tttaaactgt
      481 tctggcgacc cgaaggtttg ccgggcgacc cgctggaagc ttatcaacaa ttacgctgga
      541 cacggaattc gcagggtgta caactcacta acccaacgcc ttactacatt aacctgattc
      601 aggtgagcgt aaatggtaaa gcgttaagta atgcgggagt tgtgccgcct aaaagccagc
      661 gtcagacaag ctggtgtcag gcaatcgcac cgtgtcatgt cgcctggcgg gcgataaatg
      721 attacgacgg gttgagtgca aagaaggagc aaaatctgcc ctgaaacagg ttcggaaaac
      781 gtttgcgttt tttttgccgc aggtcaattc ccttttggtc cgaactcgca cataatacgt
      841 ccccggtttg cacaccggga atccaggaga gttcatgtac taccccttcg ttcgtaaagc
      901 ccttttccag ctcgatccag agcgcgctca tgagtttact tttcagcaat tacgccgtat
      961 tacaggaacg ccgtttgaag cactggtgcg gcagaaagtg cctgcgaaac ctgttaactg
     1021 catgggcctg acgtttaaaa atccgcttgg tctggcagcc ggtcttgata aagacgggga
     1081 gtgcattgac gcgttaggcg cgatgggatt tggatcgatc gagatcggta ccgtcacgcc
     1141 acgtccacag ccaggtaatg acaagccgcg tctctttcgt ctggtagatg ccgaaggttt
     1201 gatcaaccgt atgggcttta ataatcttgg cgttgataac ctcgtagaga acgtaaaaaa
     1261 ggcccattat gacggcgtcc tgggtattaa catcggcaaa aataaagata cgccagtgga
     1321 gcagggcaaa gatgactatc tgatttgtat ggaaaaaatc tatgcctatg cgggatatat
     1381 cgccatcaat atttcatcgc cgaatacccc aggattacgc acgctgcaat atggtgaagc
     1441 gctggatgat ctcttaaccg cgattaaaaa taagcaaaat gatttgcaag cgatgcacca
     1501 taaatatgtg ccgatcgcag tgaagatcgc gccggatctt tctgaagaag aattgatcca
     1561 ggttgccgat agtttagttc gccataatat tgatggcgtt attgcaacca ataccacact
     1621 cgatcgttct cttgttcagg gaatgaaaaa ttgcgatcaa accggtggct taagtggtcg
     1681 tccgcttcag ttaaaaagca ccgaaattat tcgccgcttg tcactggaat taaacggtcg
     1741 cttaccgatc atcggtgttg gcggcatcga ctcggttatc gctgcgcgtg aaaagattgc
     1801 tgcgggtgcc tcactggtgc aaatttattc tggttttatt tttaaaggtc cgccgctgat
     1861 taaagaaatc gttacccata tctaattatt tcttcgaatt cctctttata agataatcag
     1921 ggctttattt tcagccctgg ttgttttata ttcatcgctg ttgcttattt agacattttg
     1981 tacttttatt gttgaggtta ttaagcgaag cgacaatgga ttgtgttgct gcggttttat
     2041 agggtagggg agaggcagat gcgaattaaa ccagacgata actggcgttg gtattacgat
     2101 gaagagcacg atcgaatgat gctcgattta gccaatggta tgctatttcg ctcacgtttt
     2161 gcgcgcaaga tgttgactcc agatgccttt tctcccgcag gcttttgcgt tgacgacgcc
     2221 gcgctctatt tctcttttga agaaaagtgc cgcgatttta atttatctaa agaacaaaaa
     2281 gccgaactgg tgctgaatgt actggtagca attcgctatc tcaaaccgca aatgccgaaa
     2341 agctggcatt ttgtttccca tggtgaaatg tgggtgccca tgccgggcga tgcggcctgc
     2401 gtttggttga gcgatactca cgagcaggtc aatttgctgg tcgttgaatc tggcgaaaat
     2461 gccgcactat gcctgctggc acaaccctgc gttgttattg cgggtcgcgc gatgcagttg
     2521 ggcgacgcca ttaaaatcat gaacgacagg ctgaaaccgc aggttaatgt tgacagcttc
     2581 agcctcgaac aggcagtcta acgcgccaac ttaagtgcag tcttcggtac acagctacag
     2641 caaagaatgg tgccatcatc gcccattgct gattttttca gcggcgagac ttcgccttct
     2701 aaaatctgaa cacggcaact tccacaaatg cccgcgcggc aagaataagg gatacgaatt
     2761 ccctgatttt ctaattgctc cagcaacacc tgttggttat ttccacgaaa tgcctgtccc
     2821 tgccagtcaa tatctacatt tgcgtccggt tgttgcgtga tgttggcggt atcatcagcg
     2881 gcagctgcgc cgtaaatttt tgccggagcc gttgccagaa tttccacctc atcgccaacg
     2941 cgaatcacgc cgctattacg ggcaattaaa ttctgaccaa aatcgacatc gccgttatcc
     3001 tgggcagtgc ggaaagattg caatgttttt aatggttcgc ctgccggatg tttttgccct
     3061 ttttctgggc tgacggtggt gaaaatacag cggctacaag gtttaaccac atcaaacacc
     3121 acatcaccaa tgcgaatcac tttccagcga tcttcttccc aggctgacgc gccggaaacc
     3181 accagattgg ggcggaattg ctccattttt acactggccg gacaacgttg ttggagatca
     3241 cgtaacgagg cttcgttagc aagaaggtaa ggatagccat cagcaaatga cagaggtaca
     3301 gtgttgtggc gtttcacgcg ccgggtcatt tgtggcccca cccagcgtaa ttgcacttcg
     3361 cgggagaaaa atccacttag ccatttgttg atcgcgtctg gcgcaattcg cgcggtaaaa
     3421 tgtgtgcccc aaacttcggt tggtgcgtct tgtgtggcga aatcagcaaa acgaacatat
     3481 gcgctactgc catctggtgc ggtgagatgc aagccatcat gcacaggtga aggagtaaac
     3541 cgtaccatct ggggaaactg gcgagcggta ataaacgtac cgtcaggttc cgtgatcata
     3601 aagatgcgat cgaaggccag accactgaca tcagccagag catgtgtaag accaatgccg
     3661 cgcatcgatt taacaggatg aataaaaagc cgggttaatg tcgccacggt gcggtcctca
     3721 aatgaaaata agccctcaac tttatgacat gacgcgctta ttagctataa tgcgcaacaa
     3781 ttttcttagc gcctgtccca ttaggctatt ttatttgtca gtttggccct gggttgtgct
     3841 cgaaatcctc acgtacttgt gtacgctccg gtttctccgc gctgtccatg tccagactga
     3901 ctgcaacaat tacgcctact gcggtaggct cttagagtaa aagtgacgat atgaattctc
     3961 tgtttgccag tacggcccgt gggctggaag agctgttaaa aactgaactg gaaaacctgg
     4021 gggccgttga atgccaggtg gttcagggtg gggtccattt caagggcgac acacggcttg
     4081 tttaccagag cctgatgtgg agccgcctgg cctcgcgtat tatgttgccg ctgggcgagt
     4141 gtaaggttta cagcgattta gacctctatc tcggtgttca ggcgatcaac tggacagaga
     4201 tgtttaatcc tggcgcgacc ttcgctgtcc acttcagtgg tttgaatgac accatccgca
     4261 acagtcagta cggcgcgatg aaagtgaaag acgcgatcgt cgatgctttc acgcggaaaa
     4321 atctgccgcg tccaaatgtt gatcgcgatg cgccggatat ccgcgttaac gtctggctgc
     4381 ataaagaaac cgccagtatc gctcttgatc tgagtggtga tggtttacat ctgcgtggct
     4441 atcgcgatcg tgctggtatt gcgccgctca aagaaaccct ggcagccgct attgtgatgc
     4501 gatccggctg gcagcctgga acaccgctgc tcgatccgat gtgtggttcc ggtacgttgc
     4561 tgattgaagc ggcgatgctg gcgaccgatc gcgcacccgg cttgcaccgt gggcgttggg
     4621 gctttagcgg ctgggcgcag catgatgaag ctatctggca ggaagtgaaa gcggaagcgc
     4681 aaactcgcgc ccgtaaaggc ctggctgagt atagctctca tttttacggt tcggacagcg
     4741 acgcacgggt gattcaacgt gcacgcacta acgcccgtct tgcggggatt ggtgaactga
     4801 tcacctttga ggtgaaagat gtcgcgcaac tgaccaatcc gctgccgaaa gggccgtacg
     4861 gcacagtgtt gagcaacccg ccatacgggg aacgtctgga cagcgaaccg gcgctgattg
     4921 cgctgcatag cctgctgggt cggatcatga aaaaccagtt tggtggctgg aatctctctt
     4981 tgtttagtgc ctcgccggat ctgctaagct gcttgcagct gcgtgcagac aaacagtaca
     5041 aggcgaaaaa cggcccgctg gactgcgtac agaaaaatta ccacgttgcc gaaagcactc
     5101 cagacagcaa accggcgatg gtagcggaag actacgccaa ccgcctgcgt aagaacctca
     5161 aaaaattcga gaagtgggct cgccaggaag gaattgaatg ttaccgcctg tatgacgccg
     5221 atctgccgga atataacgtt gccgttgacc gttattccga ctgggtggtg gtgcaggagt
     5281 atgcaccgcc aaaaactatt gatgctcaca aagcgcgtca gcgtctgttc gatattatcg
     5341 ctgcaaccat ttcggtactg gggattgcgc caaacaaact ggtgctgaaa acccgtgaac
     5401 gccagaaggg caaaaaccag taccagaaac tgggcgagaa gggcgagttt cttgaagtta
     5461 ccgaatataa cgctcacttg tgggtgaacc tgacggatta tctcgatact ggtctgttcc
     5521 tcgatcaccg tatcgcccgc cgtatgctcg gtcagatgag caaaggcaaa gatttcctca
     5581 acctgttctc ttataccggt agcgccaccg tgcatgcggg attaggcggc gcgctcagca
     5641 ccaccaccgt ggatatgtcg cgtacttatc tggagtgggc agaacgcaac ctgcgtctga
     5701 atggcctaac cgggcgtgcg catcgcctga ttcaggccga ttgcctggcg tggctgcgtg
     5761 aggcaaatga acagtttgat ctgatcttta tcgatccgcc aaccttctct aactcaaaac
     5821 gaatggaaga tgcgtttgat gttcagcgcg atcatctggc gctgatgaaa gatttgaaac
     5881 gtctgctgcg tgcaggtggg acgatcatgt tctcgaacaa caaacgtggc ttccgtatgg
     5941 atctcgacgg cctggcaaaa ctgggactga aagcacaaga aattacgcaa aaaacgctct
     6001 cccaggattt cgcccgtaac cgccagatcc acaactgctg gctgattacc gcagcctgaa
     6061 aggaatagta atgtcattaa tcagtatgca tggcgcatgg ctgtcgttca gcgacgcgcc
     6121 gcttctcgat aacgcagaac tgcatatcga agataacgaa cgtgtttgtc tggtgggccg
     6181 caacggcgcg ggcaaatcga cgttaatgaa aatcctcaac cgtgaacaag ggctggatga
     6241 cggtcgcatt atttacgagc aagatttgat tgtagctcgt ctgcaacagg atccgccgcg
     6301 taacgttgag ggtagcgttt atgatttcgt tgccgaaggc attgaagaac aagcggaata
     6361 tctgaaacgc tatcacgata tttcgcgcct ggtgatgaac gacccgagcg agaaaaatct
     6421 caacgaactg gcgaaggttc aggaacagtt ggatcaccac aacctgtggc agctggaaaa
     6481 ccgcatcaac gaagtgctgg cgcaactggg gttagatcct aatgttgcgc tgtcgtcgct
     6541 ttccggcggc tggttgcgta aagcggcatt aggacgcgcg ctggtgagta atccgcgcgt
     6601 gctgttgctt gatgaaccga caaaccacct ggatattgaa accatcgact ggctggaagg
     6661 gttccttaaa accttcaatg ggacgattat tttcatctcc cacgaccgtt cgtttatccg
     6721 caatatggcg acgcgcattg ttgatctcga tcgcggcaag ctggtgacct atccagggaa
     6781 ttacgaccag tacctgcttg aaaaagaaga agccctgcgc gtggaagaac tacaaaatgc
     6841 cgagttcgat cgcaaactgg cgcaggaaga ggtgtggatc cgccagggga tcaaagcacg
     6901 ccgtacccgt aatgaaggcc gcgtacgcgc cctgaaagca atgcgtcgcg agcgtggtga
     6961 acgtcgcgaa gtgatgggta ccgcaaagat gcaggtggaa gaggccagcc gctccggtaa
     7021 gatcgttttc gaaatggaag acgtttgcta ccaggttgac ggtaagcaac tggtgaaaga
     7081 tttttcggcc caggttctac gtggcgacaa aattgtcctg attggtccga atgggtgcgg
     7141 caaaaccacg ctgctgaaac tgatgctcgg tcagcttcaa gcggacagcg ggcgtattca
     7201 cgttggcacc aaactggaag tggcttattt cgatcagcac cgcgcggaac tggatcccga
     7261 taaaacggtg atggataaca ttgccgaagg taagcaagag gtgatggtta acggcaagcc
     7321 acgccacgta ttgagctatt tgcaggactt tctgttccat ccgaaacggg cgatgacgcc
     7381 ggtacgtgcg ctttctggcg gtgagcggaa ccgcttgctg ctggcgcgtt tgttcctcaa
     7441 accaagcaac ttattgattc ttgacgaacc gaccaacgat cttgatgtcg aaacgctgga
     7501 actgctggaa gaactgatcg acagctatca gggcacggta ttgctggtta gccacgatcg
     7561 tcagtttgtc gataacaccg ttacagaatg ttggatcttc gaaggcggcg gtaaaattgg
     7621 tcgttatgtc ggcggttatc atgatgcccg tggtcagcaa gagcagtatg tggcgctcaa
     7681 acagcctgcg gtgaaaaaaa ccgaagaagc cgccgcggca aaagcagaaa ctgtaaaacg
     7741 cagcagtagc aaactaagct ataaattgca gcgcgaactg gagcagctac cgcaattgct
     7801 cgaagatctg gaggcgaagc tggaagccct acagacgcag gtggcggatg cttccttctt
     7861 cagtcagcca catgagcaga cacaaaaagt gctcgccgat atggctgctg cagagcagga
     7921 gctggagcaa gcctttgaac gctgggagta tcttgaagcg ttaaaaaatg gtggctgatc
     7981 gcaaaatagt cgatttaaac agagacagct gacaacggta aaattgcctg atgaactggg
     8041 tttatcaggc atgaaaacca acactttgtt agtcatctgt aaaatagcgc atcattaagg
     8101 agtaccaatg tgcgaacatc atcatgccgc gaagcacatc ctgtgctcgc agtgtgacat
     8161 gctggtggcg ttaccgcgcc ttgagcatgg tcagaaagcg gcatgtcccc ggtgtggcac
     8221 aacgttaacc gtggcgtggg atgcccctcg gcagcgtccg accgcctatg cgttggctgc
     8281 actgttcatg ctgttgctgt ccaacttgtt tccttttgtg aatatgaacg ttgcaggagt
     8341 taccagtgaa attacattac tggaaattcc cggcgtgctt ttttctgagg actacgccag
     8401 cctcggcacc tttttcctgt tgtttgtgca actggttccc gcgttttgtc tgataaccat
     8461 tctgttactg gtgaatcgcg cggaattacc ggtccgttta aaagagcaac tggcacgggt
     8521 gctttttcaa ctcaaaacct ggggaatggc ggagattttc ctcgcgggtg tgctggtcag
     8581 tttcgttaaa ctgatggctt acggcagcat tggggtaggc agcagctttc tcccctggtg
     8641 tttattttgt gtcctgcaac tgcgcgcttt tcagtgcgtt gatcgtcgct ggttatggga
     8701 cgacatcgcc ccgatgccag aactgcgcca gccgctaaaa ccaggcgtca cggggatacg
     8761 tcaggggctg cgttcgtgct cctgttgtac ggcaatcctt cctgctgatg aacccgtgtg
     8821 cccgcgttgt agtaccaaag ggtacgttcg gcgtagaaac agcctgcagt ggacactcgc
     8881 gctgcttgta acgtccatca tgctgtatct tccggctaat attttgccca tcatggtgac
     8941 ggatttatta ggctcgaaga tgccgtcgac gattctcgct ggggtcattc tgttatggag
     9001 cgaaggctct tatcccgtcg ctgcggtgat ctttctggcc agtattatgg tgccaacgtt
     9061 aaagatgatc gccatcgcgt ggctgtgttg ggatgccaaa gggcatggca agcgcgacag
     9121 tgaaagaatg catttgattt atgaagttgt tgagtttgta ggccgctggt cgatgattga
     9181 cgttttcgtt atcgcggtgc tctcggcgct ggtgcgtatg ggaggtttaa tgagtattta
     9241 tccggcaatg ggtgcattaa tgtttgcttt agtcgtcata atgacaatgt tttctgctat
     9301 gacgtttgac ccgcgtttgt cgtgggatcg tcaacctgaa tcagagcatg aggagtcctg
     9361 acagtatgga atctaataat ggggaagcca aaatccagaa agtgaagaac tggtctcccg
     9421 tgtggatatt tcctatcgtc acggcgctca ttggggcctg ggttctattt tatcattaca
     9481 gccatcaggg accggaagtg accctgatca ccgcgaatgc ggaaggaatt gaaggtggca
     9541 aaaccaccat taaaagccgt agcgttgacg tcggcgtggt tgaaagcgcc acactggctg
     9601 atgatttgac gcacgttgaa atcaaagcgc ggctgaattc cggtatggaa aaattgctgc
     9661 ataaagacac cgtcttttgg gtggtgaaac cgcagattgg tcgcgaaggg attagcggcc
     9721 tgggaacgct gctgtctgga gtttatatcg aactgcagcc aggcgcgaaa ggcagcaaaa
     9781 tggataaata cgatttgctg gactcgccac cgttggcccc gcctgatgcg aaaggtatcc
     9841 gtgtgattct cgatagcaaa aaagccgggc agctctcgcc aggagatccg gtgctgttcc
     9901 gtggctatcg ggtaggttcg gttgaaacca gcaccttcga tacgcaaaaa cgcaatatca
     9961 gttatcaact gttcatcaat gcaccttatg accgactggt gaccagcaat gttcgcttct
    10021 ggaaagatag tggcattgcg gttgatctga cgtcagcggg gatgcgtgtg gagatgggct
    10081 cattgacaac gctgcttagt ggcggtgtta gctttgatgt gccggaaggt ctggatttag
    10141 ggcagccagt ggcaccgaaa acagctttcg ttttgtatga tgatcagaag agcattcagg
    10201 attcgttgta caccgatcac attgattatc tgatgttctt taaagattcg gtacgcggtc
    10261 tgcaaccggg agctccggta gaattccggg gtattcgcct gggtaccgta agcaaagtgc
    10321 cattctttgc gccgaatatg cgtcagacat ttaacgatga ttaccgtatt ccggtactga
    10381 ttcgtatcga gccagagcgg ctgaaaatgc agcttggcga aaatacggat gttgttgagc
    10441 accttggcga attgttgaaa cgtggtttac gcggatcgct gaaaaccgga aacctggtca
    10501 ctggtgcact gtatgttgat ctcgatttct atccaaatac gcctgcaata accggtattc
    10561 gtgaatttaa tggttatcag attatcccga ctgttagcgg cggcctggcg caaatccagc
    10621 aacgactgat ggaagcgttg gataagatca acaaactgcc attgaatccg atgattgaac
    10681 aggcaaccag tacgctttct gaaagtcagc gcacaatgaa aaacctgcaa acgacgctgg
    10741 atagcatgaa caagatcctc gctagccagt cgatgcagca gttgccgacg gatatgcagt
    10801 caacgttgcg tgaattgaat cgcagcatgc agggcttcca gcctggctcc gcagcctaca
    10861 acaagatggt ggcggatatg cagcgccttg atcaggtgtt gcgagaactg caaccggtgc
    10921 tgaaaacgct caatgagaag agtaacgcgc tggtatttga agcgaaggac aaaaaagatc
    10981 cagagccgaa gagggcgaaa caatgaaaaa gtggctagtg acgattgcag cactgtggct
    11041 ggccggatgc agctccggcg aaattaataa aaactattac cagttacctg tggtgcagag
    11101 cggtacacaa agtaccgcca gccagggcaa tcgtctgtta tgggtagagc aggtcactgt
    11161 tcctgactat ctggcgggga atggtgtggt ttatcaaacc agtgatgtga agtatgtgat
    11221 tgccaacaac aacttgtggg ccagcccgtt ggatcaacag ttgcgcaaca ccctggttgc
    11281 caacctgagt acgcaactgc ccggctgggt ggttgcctcc cagcctctgg gaagcgtcca
    11341 ggacacgctc aatgttaccg taacggagtt taacggtcgc tatgatggca aggtcattgt
    11401 cagtggtgag tggctgttga accaccaggg acaactgatc aaacgtccgt tccgtctgga
    11461 aggagtgcaa actcaggatg gttacgatga gatggttaaa gtgctggccg gtgtctggag
    11521 tcaggaagcc gcttctattg cacaagagat aaagcgtcta ccttaattat aaagatttgt
    11581 aagtataacc gtctccggta tgttgcctga ggcggttttt ttgtttctaa cgtgcggaaa
    11641 aatttgttcc tcttcacatt ttttgtacaa ccgacatgcc cgtgtagctc acaaatatga
    11701 cagtggcgtg aattttgcgc attgacggca gttatgattc gcggtattgc ttaactgtga
    11761 ttgcacattt agtaatcact gttttctttt ccaccagaaa ccagtatgag ggaaacgagg
    11821 catgaagaga caaaaacgag atcgcctgga acgggcacat caacgtggtt atcaggccgg
    11881 catcgccgga cgctcaaaag aaatgtgtcc ctatcagacg ctgaatcaaa ggtcacaatg
    11941 gctgggaggc tggcgagaag ccatggcgga cagggtagta atggcctgat tctgtctctt
    12001 taaaaagaaa cctccgcatt gcggaggttt cgccttttga tactctgtct gatgataatc
    12061 agaaggcaga cgtatcctgg aacagaccga ctttcaggtc gctggcggta tagatcagac
    12121 gaccatcaac cagcacttcg ccatctgcca gacccataat cagacgacga ttaacaatgc
    12181 gtttaaagtg aatacggtag gtcacttttt tcgctgtcgg cagtacctga ccagtgaatt
    12241 tcacttcgcc aacgcccagc gcgcggcctt taccttcgcc gcccagccag ccgaggtaga
    12301 accctactag ctgccacatt gcgtccaggc ccaggcatcc cggcataacc ggatcgccaa
    12361 tgaagtggca tccgaagaac cacagatccg gattgatatc cagttctgct tcaacatacc
    12421 ctttgtcgaa gttaccaccc gtttcggtca ttttgaccac acggtccatc atcagcatgt
    12481 tcggtgctgg caattgcggg cctttagcgc caaacagttc accgcgacca gaggcaagaa
    12541 ggtcttcttt tgtataggat tcgcgtttat ctaccatgtt ctctgtaagc cttattttat
    12601 tgaagcacgc aggatagcta acacgtgtac gctgaacaag tccgatcagt tcggaataaa
    12661 ccagttcagc caacgtaatg gccatggaaa acggtgacgt ccttcctgtt gcgatgcttg
    12721 cgcgatacgt tcctggatgg tttgcatcag cgtcgtttgg ccttcgccat cccacaccag
    12781 atttaataat aacggcagtg cgtcagtcac atcgtctact gcccagatgg tgaatttgcc
    12841 ttcttctacc gctttcacca gttcactgtg aagacttaaa tggcgaacgt tagctgtggg
    12901 gataatgaca ccttgtttcc cggttaactc acgttgctgg caaatagcaa agaagccttc
    12961 gattttctca tttaaaccac cgaccggctg ggcgcgaccg aactgatcga ctgaacctgt
    13021 gatagcgata ctctgattca ccggcacatc ggcgagggcg cttatcaggg cgcagagttc
    13081 agccatcgag gcactatctc catcaacttc actgtatgac tgctcaaatg tcagcgatgc
    13141 tgagaagggg atctgttgct caagctgtag ttccgacatc aggaacgctt gcatgatcat
    13201 catccctttc gcatggatat tgccgccaag ttccgctttg cgttcgatgt cggtgaattc
    13261 accatcgcca atatgcacaa cgcagctaat gcgagaaggt tcgccaaaag cgcgtggatg
    13321 acccggaaat tcaatgaccg aaagggcgtt aatttgcccg atgcgttcgc cttcggtttc
    13381 aatcaggatt tgctcctgaa ggatctcatc ctgcatacgt tcagcgagga aaccttcgcg
    13441 ccattcacgc tgctgcagca ttaagtttag ctgctcgccg gagaaggtgt cgccatcaca
    13501 cagggaggcg acctctttac actggcggag gatccactgc gggctaagcg gaagtgtttc
    13561 ttgttcaccg gtgtagcgtg ctgcttcgcg gataagtacc ggccaggcat ccgctcccgg
    13621 ggcaggtaag tgattatgtc tggcggtaaa tgtcacccag cgacaccact ggcttactga
    13681 ctccgcatcg acaatctgca gagtatcttc aaattcgcta taaatagcct gctctgaaag
    13741 ctctggctcc atctcctgga aatcagccaa tgattcgcgt tcgcctacca gaatgacttt
    13801 cagcttcaat ggcatcgaag gcacagagac ggggagaggg cgcgactcat caaacgcaac
    13861 ccagtcaaaa cgctcgcggt taacgatatt tttcagccgc atccacagca gaggttgcgc
    13921 cagcagtgta cgcaaagaga tgatgagaat accgccattt gcctgatgca ccagaccagg
    13981 ctgcagggta atgtcgccat taaactggcg caggcagcca aagagttgct ccgcttctac
    14041 ccagtcggca gcgacaactt gcgttaaagt cgcaaaatta tcatctgcac tcactgcgtg
    14101 acgtaagcgg atggagtggc cggaaacctc atagtgatcg cccaccagtt ggcctgcatc
    14161 gctttgtagc gtacgcgcgg catcggcaat aagattcaga tactcagact cttccggggc
    14221 cttagccagc ataaaagagg aggatgctcg cgtatgcagc aactgctcca gcgcaaattg
    14281 cagccgcggt tgagtatcac tgaataaagg atcgttttcg tcaatcaaat gtggctgagc
    14341 aaatatttcc tgatagctat cggtatcagg aaccaggtca cgccatgcaa gtttcgtaat
    14401 ggtcaaagtt gatgtttttt agtctgttgt caaagccgcg attataccgt aaccggcact
    14461 acagcacacg tagaaagcac cgacaatact cctggcatgg gcgttaaagc tcacaggatg
    14521 gagattcttt tcttcactgg cctaaaaagc tgatattctg taaagagtta cacggtaaca
    14581 ttgagatcgc tatgaaatat caacaacttg aaaatcttga aagcggttgg aaatggaagt
    14641 atctggtgaa gaagcatcgc gaaggggagt taattacccg ttacatagaa gccagtgccg
    14701 cccaggaagc cgtcgatgtg ttgctctcgc tggaaaatga acccgtgctg gtaaatggct
    14761 ggattgacaa gcatatgaat ccggaactgg tcaatcgcat gaagcaaacc attcgggcca
    14821 gacggaagcg ccattttaat gcggaacacc agcatacgcg caaaaagtcg atcgatctgg
    14881 aatttattgt ctggcaacgt ctggctggtc ttgcgcagcg tcgcggtaaa acgctttctg
    14941 aaacgattgt tcagctgatt gaagatgcgg aaaacaaaga gaaatacgcg aataaaatgt
    15001 cttctctgaa gctggatctg caggcattgc tgggtaagga ataactgacg aaagtcagtt
    15061 caatttacta aaggcaaaaa aaaccccgca gcagcggggt ttttctacca gacgataact
    15121 taagcctgcg gctgagttac aacgtctttg atacctttaa cttcgatctc tacgcgacga
    15181 tccggagcca ggcagtcgat cagtgcagca cgctgtttca cgttgtcaca ggtgttgcca
    15241 gtaaccgggt tggattcgcc cataccacgt gcggagatct tgtctgccgg gatacctttg
    15301 gagatcaggt aatcaacaac agactgagca cggcgctcgg acagaccctg gttgtaagcg
    15361 tcagaaccga tgcggtcggt gtaacccaga acaactacgg aaccgtcttt cggatccagg
    15421 ttgctcagct ggctgtacag ctgatccaga gcagcctgac cttccggttt cagggttgct
    15481 ttgttgaagt tgaacagaac gtcagacttc agagtgaagt gcttggtctg tacttccggt
    15541 gccggagctg gagccggagc aactactgga gctgcttcgc cctgaccgaa acggtaggaa
    15601 acacccaagc tcagcatgcc gttgtccgga cgagtgccga tggtgtgtgc gtcaccgatg
    15661 ttgttggtcc actggtattc cagacgggta gcgatttcag gagtgatcgc gtactcaaca
    15721 ccgccagcga agaccggaga aacgccggtg tcgtggtttt taccataaac gttggattta
    15781 gtgtctgcac gccataccat accacccaga cgagtgtaga tgtccaggtc gtcagtgatt
    15841 gggtaaccca gtttagcggt cagttgaacg ccctgagctt tgtatgcacc gttttcaacg
    15901 ctgcctttgt acggcatacg acctaaccag tcgtaaccca tttcaaagcc aacatacggg
    15961 ttaacctggt aaccaccaaa agcaccagcg cccagttggt tttcatgggt cgggccattg
    16021 ttgttgatga aaccagtgtc atggtactgg gaccagccca gtttagcacc agtgtaccag
    16081 gtgttatctt tcggagcggc ctgcgctacg gtagcgaaac cagccagtgc cactgcaatc
    16141 gcgatagctg tctttttcat tttttgcgcc tcgttatcat ccaaaatacg ccatgaatat
    16201 ctccaacgag ataacacggt taaatccttc accgggggat ctgctcaata ttaactctac
    16261 cgatatcttc ggcttatgcc gagcacccct ggcgatgtaa agtctacaac gtagttgaaa
    16321 acttacaagt gtgaactccg tcaggcatat gaaaaaaaag tcttgtataa ggtatgttta
    16381 atcttttttg tcagcgacaa tttacagaag aaaatcgcgg aaaccgcttc agacaagcct
    16441 ccgcaaggaa aattagtcac gactgaaagc attggctggg cgacaaaaaa agttccagga
    16501 ttaatcctaa atttacttaa tgatacaaat tagagtgaat ttttagcccg gaaagttgtc
    16561 tcgtggcgtg agaggatgcg cttaccggac gcataataaa ccccatagcg ttaccttcat
    16621 ttgccgcatc aacaagttca gcatgctctt cttcagtcaa atcatctgcc aaccaaccga
    16681 tcaccacact gtaattgccc gtgcgtaaag cgcgaaccat tgactccaca gtgtggcaag
    16741 gggagagctg gctaatctgc attactttcg ttaagggtag cccagatgcc tgaacccatt
    16801 cccgactcag tttttgttgc ggtgttaacc agagttgcca gcgcgattgc tgaccgagtt
    16861 gctgtaacaa tggcaacagt agaagttgcg tcatcatggg ctgatcttcg cgatagacaa
    16921 cttcactgat aagcccggct gtagtgtttt ccgtagagac acgcgcaatt ttacttgctg
    16981 cggatgagaa cgacgaagaa cgatgtgcat agcctgaagt gtacataatc aatccagccc
    17041 ctgtgagtta ctgtatgaat gtacagtaca tccagtgaca acaaagatca accctatttt
    17101 cggaaagagc ctcgcaaatt ttttcgttgg tgacgggaaa acataaatta atcttgcccc
    17161 ttaagaataa gttgcctatt ttcgtagtta acggatccgt taatgtgaat cattctttta
    17221 tgttatgatt ttaaaaggaa ttttatgaaa agcctctcct ataagcggat ctataaatca
    17281 caagaatacc tggcaatgtt gggcacaatt gaataccgat cattgtttgg cagttacagc
    17341 ctgaccgttg acgacacggt gtttgcgatg gtttctgatg gtgagttgta tcttcgggct
    17401 tgtgagcaaa gtgcacagta ctgtgtaaaa catccgcctg tctggctgac atataaaaag
    17461 tgtggccgat ccgttaccct taattactat cgggttgatg aaagtctatg gcgaaatcaa
    17521 ctgaagctgg tgcgtctgtc gaaatattct ctcgatgcag cgctgaaaga gaaaagcacg
    17581 cgcaataccc gggaaagact gaaagatttg cccaatatgt cttttcatct ggaagcgatt
    17641 ctcggggagg tggggattaa ggatgtacgg gcgttacgta tacttggggc aaaaatgtgt
    17701 tggttgcgac tgcggcagca aaacagtctg gtgacagaaa agattctgtt tatgcttgaa
    17761 ggtgccatta tcggcattca tgaagctgcg ctcccggtgg cacgccgcca ggagcttgca
    17821 gaatgggctg actcacttac gccgaaacag gagtttcctg cggaacttga gtaatctggc
    17881 gttgcagacg accaatctca ggcagtaatg caatcaataa tccaacttgt tgtacgacca
    17941 gaggttcttt gctgtctgcc cgtggttcaa gttgctgcat ccgctgtttc aggctagcta
    18001 atgcctcatt gacgcgttct tcatcagcag gttgatgatg taacgcgtca tcaacatagc
    18061 aaactgcgtc atcaagaaac gccagaattt caggattagt taactgctcc cggtgagcac
    18121 cgagggctga gatatagctg gtaaacgtat ggttaaggca cagcaaccga aacgcggctt
    18181 cgcgaatttg cggggtaacg ttcggctcgc tggacatatt tgataccacc gacgccagct
    18241 cagcatcacg gttgtgtgca tcgcggcggg caatacgata cgccagacgg ttatcacgcc
    18301 cctgatggta ttgctccagt atggcatcga gataccgaca gttggcctct gtggcgcgtt
    18361 cgagcatgcg cggcaaattg cgaaactgcc agtcaggcca gatgtagctc actgccgccc
    18421 acgcaatggc acaaccaatc agcgtatcga ttacgcgagg taacgctact tcaaaacctt
    18481 cacccagtaa gttaaaacac agtagcacca aaagtgtgat gaacatcgtt gcatgagcgt
    18541 attgcacgtt acggaaggca aaaaagagca cgccggtaat aaccagcagc accagctgcc
    18601 cttccagtga tggcacaaac cacagcacag gaatgccaat ggcgatacct accagcgtac
    18661 caataatcct taacttcagg cggtggcgcg tggcgttata gtttggctgg cagacaaaca
    18721 aacttgtcag caagatccaa aacccgtgat gcattccggt tatttgaatg atggcgtagc
    18781 cgaagcacaa caccagcgac attcttaccg catgacggaa gagggcggat tccggcgtga
    18841 agtgacggct aagacgcagc cagatatcac tcaacccgtg cgggctgtca tcagcgagct
    18901 cattttcgtc attattatgg ggtagtgcct gggcctgttc tgattcaatt gttgccagtt
    18961 gggcatcaat ggcgcgtaaa ttgttcagca aaaatcccag tgttttgagt aaatcggcgg
    19021 gtgcgccgtt atcgcgcatc cgctccagcg cagcatcaat atgcgtaaaa gcgcgctcaa
    19081 aatgcggatc atgttgataa ggctgacgca acaaaataca gcgtgacagt tgctggcacg
    19141 cctggccctg catcgacatc agccgctgaa aacggaacag cacgtcgctg tggcgaaaat
    19201 gttcacgcaa tgtttgatac tgaatatgag aagagctggc acgctcgtga atatcctgtg
    19261 cgacaaagta ataatgcagc gtgcgacgcg ttccccgttg accacgatcg ccacgtaagc
    19321 gggtcagcag cgagagtttc gtctgattca atgtcgccat cagcagaccg ttggcgagag
    19381 ccaaatcgta cagcggtgcc tggctttcat cttcaatatc aggatcaaac atgcgcgact
    19441 tgagctcaag ataacgcgcc agttgttcat agcaacgcgc caggttgtcc tgcagcgggc
    19501 ggaccgggaa cagcagatga ccaataagtg tcaggacgtt gtaccagacg gcaccggcca
    19561 gcagatacat cggctgctga taccagtgct catacagtga tgttcccaac atagtgtaaa
    19621 tggcgatcag caatgcaccg aaggcaattg ttgcatagcg ttgacccaga ccgccgagca
    19681 aaatgaagcc gctggtagag agcgttaagc caatcgcaaa tagccagggc cagggaaaca
    19741 gcaattctac tgaggccgag gcgataaaaa agcagaacag cgtaatgatg aggttacgca
    19801 aacgtcccgc cagtcggtca tcgagatcgg tcagcgccgc tgccaccatc cccagcgtta
    19861 gcggaatcgt cagttttaca tcacccagcc accacggaaa cgctgtggtt ccacaaagcg
    19921 caataaaaat acgcgcgtaa tacagccagg cgctgttcca ggtatagcgt ttgagcaaag
    19981 gacttagcat aaaggccata ttagtggatt attcaaaacg acgacgtgca ttggcttcac
    20041 gcgcagcttg cgctgtttct accgatacca cgcgacgacc aaccggccat agtgcaatag
    20101 cggcaatttt aaagttcgca atgccgacag gaatgccaat gattgaaata cattgtgcga
    20161 tgcccgttgc aatgtgcatc aggcataacc accagccaaa gaaaatcagc cagaaaatat
    20221 tcaataccgt accgccagta ttcagcagca catttttgcc agccgggttc agttcatcga
    20281 catgaatagc ttcattgcca taaggcacca gagacagttt agtgatctcc cagcaggatc
    20341 gtgtcagcgg taaggtaaaa atcagcacaa tactgaccag agtcgccaac agccagccca
    20401 gagtggtggc aaatccgcca agcacaaagt tcagaatgtt caaaacggta cgcataaaac
    20461 ctcgctttac tgtggttttc agtaatgggc ggcaattgta acgttttttt gggctggagc
    20521 acgttttctc tgacggttac actgataaga aataatttcg tgtggatcta cagagtcatg
    20581 gaactgaaag cgacaacgct tggaaaacgt ctggcacagc acccttacga tcgggcggtg
    20641 atcctcaatg ccgggattaa agtctccggc gatcgccacg aataccttat tcctttcaat
    20701 caattactgg cgattcactg taagcgtggt ctggtatggg gcgagctgga atttgtactg
    20761 ccggacgaaa aagtggtgcg tctgcacggc accgaatggg gcgagacgca gcgtttttac
    20821 catcatcttg atgctcactg gcggcggtgg agtggcgaga tgagcgaaat tgcgtctggt
    20881 gttttacgcc agcaactgga tttgattgcc acgcgcactg gagaaaataa atggctgacg
    20941 cgtgagcaaa cctctggcgt tcagcaacaa atccgccagg ctttgtcggc gttgccgttg
    21001 ccggttaacc gactggaaga attcgataac tgccgtgagg cgtggcgtaa atgtcaggcc
    21061 tggttgaaag atattgaaag cgctcggttg cagcataacc aggcgtatac cgaagccatg
    21121 cttaccgagt atgcggattt tttccgccag gtcgagtctt caccgctgaa tccggcgcag
    21181 gcccgggcag tcgttaatgg cgagcattct ctgttagtgc tggcaggtgc aggaagcgga
    21241 aaaacgtcgg tgctggtggc ccgtgcaggc tggttgctgg cacgtggtga agcgtcccct
    21301 gagcaaattt tattgctggc gtttggtcgc aaagccgctg aagagatgga cgagcggatt
    21361 cgcgaacggc tacataccga agacattacc gcacgcacgt ttcatgcgct ggcgctgcat
    21421 attattcagc agggcagcaa aaaagttccg atagtcagca aactggaaaa tgataccgct
    21481 gcccgtcatg aactctttat tgctgagtgg cgcaagcaat gcagcgaaaa gaaagcgcag
    21541 gcgaagggct ggcggcaatg gctgacggaa gaaatgcagt ggtcagtgcc agaaggtaac
    21601 ttctgggatg atgaaaaatt acagcgtcgc cttgcctctc gcctcgatcg ctgggtaagt
    21661 ctgatgcgga tgcacggtgg tgcacaggca gaaatgattg ccagtgcacc cgaagagatt
    21721 cgcgatctgt tcagtaaacg tatcaagttg atggccccgt tattaaaagc ctggaaaggt
    21781 gcgctgaagg cagaaaacgc tgtcgatttt tcgggcctta ttcatcaggc gattgtgatt
    21841 ctggagaaag gtcgctttat cagcccgtgg aagcatattc tggttgatga atttcaggat
    21901 atctcgccgc agcgggcagc gttgttagcg gcattacgca agcaaaacag tcagacgacg
    21961 ttgttcgctg ttggtgatga ctggcaggcg atttaccgat tcagcggtgc gcaaatgtcg
    22021 ctcaccaccg ctttccatga aaactttggt gaaggcgaac gttgtgattt agacacgact
    22081 taccgtttta acagtcgtat cggtaaggtg gcaaaccgtt ttattcagca gaacccaggc
    22141 cagctgaaaa agccgctaaa cagcttaacc aatggagaca aaaaagccgt cacgttattg
    22201 gatgagagtc aacttgacgc tttgctggat aagctctctg gttatgccaa accggaagag
    22261 cgcattctga tcctggcgcg ttaccatcac atgaggcctg ccagcctgga aaaagcggca
    22321 acacgctggc cgaagttgca aatcgacttt atgaccattc atgccagcaa agggcaacag
    22381 gcggattacg tcatcatcgt tggcttgcag gagggaagtg atggttttcc ggctgcggcg
    22441 cgggagtcga ttatggaaga ggcgctactg ccaccggttg aggatttccc ggacgctgaa
    22501 gaacggcggt taatgtacgt ggcgctgacc cgggcacgcc atcgggtatg ggcactgttt
    22561 aacaaagaga atccctctcc ctttgttgaa atactgaaaa atctggatgt gccggtggcg
    22621 agaaaaccgt aagaaacagg tggcgtttgc cacctgtgca atattacttc agacggtccg
    22681 cgagataacg ctgataatcg gggatcagaa tatcgaccgc gtcgttgaaa tgcggcgact
    22741 ggattatgaa gtctgccgtt gccacgttgg tggcgaccgg aatgttccat accgtcgcca
    22801 gacgcagcaa ggctttcacg tcaggatcgt gcggcacggc atttagtgga tcccagaaga
    22861 aaatcaatac atcaattttc ccttctgaga tcaatgcgcc aacctgctgg tcacccccca
    22921 ttgggccact caacatcgcg ttgacgttca tgccggtcgc gcgggaaatt aagttaccgg
    22981 tagtgcctgt tgcatacagt acgtgttgtt ccagtaacgg ttgatgccgt tccacccagc
    23041 tcatcagcat ttgtttgcag tgatcgtgtg ccaccagcgc aatatgtttc cgcgcaggta
    23101 aagtgcgagt cgtcagttcc ataatgtaca tccgtagtca actttcctac agattactgt
    23161 aagcacttat cgctgcaaga taaagaccga aaaagcctgc gcacaggcac aaaaatctca
    23221 ggaagatggt tgtttttccg cccactgcag gaaagtattt cgcgtttgtg ggtcagccag
    23281 tttaaaccaa tacttcagcc gttgttctgt gagcacctga gactgcggtg gaatagcatc
    23341 cagctcggaa acacccgaaa gcagcgtact gtcatctgcc atcatcgtgg caaattgcgg
    23401 tagtgaagcg cgtttcgcgg atttgttata gcgttcaacc tcgacctcat aatcaatcgt
    23461 ttttgccgtt gaggtaatgg cgagaatatc cagctttacc ggaatcggcg tcgcatcgcc
    23521 atccaacaat tcaaggcgcg gcgcggcatc aaaatggtta gcttcccgct cattctccag
    23581 gcgaggcagg cgaaaattga cctggttgat gagctgggta ttaaaactga ccactagcgg
    23641 tggggagata tacagccgtt cttcactatt ggaaagatga atcgtcttct caacgcgaaa
    23701 cactaactga tgcggtccat tatccagttc aatgctgtcc gcaccgcgca gcagagagct
    23761 ggaaaccttc ttgccgtcga gtaccagaag atcgacatcg gttgaaagcc gcagcgtggt
    23821 ggcaaaaacg gataccggca aacataatgc aatcaaggtg gtcacgatgc cggttttcat
    23881 aggtagctcc tgtcaaaaga ccgcccgaat aataatgtgt caaaattttt ctttaatcat
    23941 acttactaac atatagacat atttcccgct tttgctctca ttcattcgta ttagctgcat
    24001 ggttggcatg tcggctttgt cgtacacttt gttaaacagt ctggaggaaa taatgaaaga
    24061 aaccgatatt gcaggcattt taacgtccac tcacaccatt gcgctggtgg gggcaagcga
    24121 caaacccgat cgtcccagct atcgcgtgat gaaatatcta ctcgaccagg ggtatcatgt
    24181 cattccggtt tcgccaaaag ttgccggcaa aacgctgctg ggccagcagg ggtatggcac
    24241 gctggcagac gttccggaaa aggtcgatat ggtcgatgtt ttccgtaatt cagaagcggc
    24301 gtggggcgtg gcacaggaag ctattgccat tggcgcgaaa accctctgga tgcaactggg
    24361 ggtgattaat gagcaagcgg cagtactggc acgggatgcc gggttgaatg tggtgatgga
    24421 tcgctgcccg gctattgaga tccctcgcct gggcctggcc aaataaaaaa tccccggaag
    24481 gcaaaaacct tccggggatt cgttcaggga tcagttacgc agacgcgggg cctggagttg
    24541 tttgcggatg gtctgcgcca gctcatccat ggatggctgt tcaggatgtt catcctgcaa
    24601 ttcgctactt agctgggctt cagccaggta ggtatgaacc ggtaggccgt tatcgtcctc
    24661 catcactacg tgataccacg gagcggcgcg aagctcgtca tttaccgcca gctcatcagg
    24721 cgacggttca gagagcgaat aaaccgggtc gatatccacg accactccga gataacctaa
    24781 cagggaatgg cggacctgct ggccgatacc gaatttgctg gcaatcatag tcacctcccg
    24841 ggaaatcttt acctttgata taagggtaaa attccacatt tcaagttaca tgacgcgaca
    24901 ggcaaaccct ttcagatata gcccttccgg ataggtagcg atcaccggat gatcggctgc
    24961 ctgacggaac tgctctataa attgtacatc acggccggca tcaattgcgg catccgcgat
    25021 gattttctga aataaatcgc tggtcatcag accggaacag gagaaagtca ggagaatacc
    25081 gccttcattc agcaactgaa tcgccagcat gttgatatct ttatagccac gacacgcgcc
    25141 catcaactgg cttttattct caacaaactt cggcgggtcc atcacgataa cgtcaaattt
    25201 ttcaccgcga tcgcgataag tacgcagcaa tttaaagaca tcatcacgga caaactcagc
    25261 cttgctcaga tccagtttgt tcagctcaac gttctgccgt gcaatatcca gcgcttcctg
    25321 ggaggtatca acgctgacaa cctggctgca accgcccatc agtgccgata cggcgaaacc
    25381 accggtatag gagaaacagt tcagcacacg tttattttca acgtagcggc gggtagccag
    25441 gcggctgtct cgctggtcca ggtagtagcc cgttttgtgt ccgtgctgaa tatccaccag
    25501 cagcttcatg ccgtgttctt caatcggcag cagggcaggc ggcaactcgc cggtgacgag
    25561 gcccagggtc agctccatcc cttctttttt acgtaccgca acatcgctgc gatcgtaaat
    25621 cgcacattcc gggtacagcg tttgcagggc actaactaat gccgcgcgct gatattctgc
    25681 cccagcactc agcagttgca gcaccagaaa attaccgaaa cgatcgatag taatacccgg
    25741 caggccatca gattctccgg cgattaaacg atagctgtcg aggccatctt tttgcgccag
    25801 ccagtcacgc catttttgtg cttgttgcaa acggcgggaa aaaaaagcaa tgtcgataga
    25861 ctcagacggg tcaaacgtcc agacgcgcgc ccggatttgc gaagctggcg aataagcgcc
    25921 gcgtgctaac cattttccct gatgatcaac aatatcgatg gtttcaccga ggctggcttt
    25981 accttccatg cgggcaacgg ccccggaaaa gacccacgga tggcgacgaa gtaatgattt
    26041 ttcgcgccct ttggctaaca ctaaacgtac actcataatt tacttttctg tcgatgcaaa
    26101 gaaatgggcg tcattgtccg gagttttcca tggatttgca acgcgtccat taaggataag
    26161 gagagcagca atgtcgaaag tctgcataat tgcctgggtt tacgggcgag ttcagggcgt
    26221 aggatttcgc tacaccacac agtacgaagc gaaaagactg ggtttaaccg ggtacgccaa
    26281 aaatcttgac gatggcagcg tggaagtggt tgcctgcggt gaagaagggc aggtggaaaa
    26341 attaatgcag tggttaaaga gtggcggccc gcgttctgcg cgtgtagaac gggtgctcag
    26401 cgagccgcat catccctcgg gggaattaac cgattttcgt atccgttaaa tacattttac
    26461 cggttttggc aggccagcaa ttttggtggc ttgcttagcc ggacctttcg gaaacagtcg
    26521 gtataaatag cggctgttac ctttttcttc gccaaattta ttcgccatcg cttttaccag
    26581 catacgaatc gccggagaag tattgaattc cagatagaaa tcacgcacaa aacgcaccac
    26641 ttcccagtgt tccggtgaca gcgaaatccc ttcgttctct gcaatcacca ctgccagcgg
    26701 ctcactccac tggctgcttt ctttgagata gccttcggta tccgtttcta tctctttacc
    26761 ttcgaagatc agcataatta ttactacctt aatcagactg gcggcagtgt aacaaaaaac
    26821 aaagccccgc ataaagcgag gctatgaaag tgttagcggg tgagattaat cgcggctggc
    26881 gaagcccaga atgctcagca ggctgacgaa gatgttgtac agcgaaacat acaggctaac
    26941 cgtggcacga atatagttcg tttcaccgcc atgaacgatg ttgctggttt caaacaaaat
    27001 agcgccagag gagatcaaaa tgaagaccgc actgatcgcc agatgcagag caggcagctg
    27061 caggaagata ttagcaacca taccaatcag caccaccaca atacccgcca tcagcatacc
    27121 gccgaggaac gacatatctt tgcgggtggt cagcacatat gcagagcagc agaagaacac
    27181 taacgccgtt ccgcccagag ccatagcgat tacgtccccc attccggcag acagataggt
    27241 gttcagaata ggtccgagga tataacccag aaaaccggta aaggcgaatg cggagataat
    27301 cccggtcggc ttattcgccg ttttataggt caggaacatc aaaccataca tacccaccag
    27361 cgtcagaatc agacccggag atggcagcat cagcaccgta ctggcagttg cggtaatcgc
    27421 cgaaaaggcc agcgtcaggc tcagcagaaa ataggtatta cgcagcacct tatgggtgct
    27481 aagcagtgat gtacggtcat gtgaagaact aacaatacga tccattgagt cactctctat
    27541 gacagatgta attaattaag cagcataatg ataatgcgta agggcaccca gaagttttac
    27601 ccatctttac gcatttgatc tggaacaggt ttaacagcgg attatcaggt cattaagcaa
    27661 atataacgcc ctgagaattt cgacaggcaa aagaaaaagg ggttagcatt tagctaaccc
    27721 cttatcttat ttggcggaag cgcagagatt cgaactctgg aaccctttcg ggtcgccggt
    27781 tttcaagacc ggtgccttca accgctcggc cacacttccg gaatgacgcg cactataaac
    27841 atcccgatgc ggcgtgtaaa cccctaattt gtttgtttgc ctgaaaaaca gccaaaagtg
    27901 cattgatagc gtgaaataac agcagattga tcatttcatc accatgaatt ccttctcttt
    27961 tactcgttta gcaaccggct aaacatcccc accgcccggc aaaaagaaaa ataggtccat
    28021 ttttatcgct aaaagataaa tccacacagt ttgtattgtt ttgtgcaaaa gtttcactac
    28081 gctttattaa caatactttc tggcgacgtg cgccagtgca gaaggatgag ctttcgtttt
    28141 cagcatctca cgtgaagcga tggtttgcct tgctacaggg acgtcgcttg ccgaccataa
    28201 gcgcccggtg tcctgccggt gtcgcaagga gaagagacgt gcgatatgaa taacgaggaa
    28261 acattttacc aggccatgcg gcgtcagggc gttacccggc gcagctttct caaatattgt
    28321 agtctggctg ccacgtcgct gggattaggc gcgggaatgg caccaaagat tgcctgggcg
    28381 ctggagaaca aaccccgcat tccggtggta tggatccacg gtctggaatg cacctgctgt
    28441 accgaatctt ttatccgctc cgctcaccca ctggcgaagg acgtcatcct ttccctgatt
    28501 tccctcgatt atgacgatac tttgatggct gccgccggaa cccaggcgga agaagtcttc
    28561 gaagacatca tcacgcaata caatggcaaa tatatcctcg cagtagaagg taatccgccg
    28621 ctgggcgagc aggggatgtt ctgtatcagc agcggtcgac cgtttattga gaaactcaaa
    28681 cgtgccgctg ccggagccag cgcgattatc gcctggggaa cctgcgcgtc ctggggctgc
    28741 gtgcaggccg cgcggcccaa tccgacgcag gcaacgccta tcgacaaagt catcaccgac
    28801 aaacccatta tcaaagtacc tggctgcccg ccgatcccgg atgtgatgag cgccatcatt
    28861 acttacatgg tgacctttga tcgcttgcca gatgtcgaca gaatgggccg tccgctgatg
    28921 ttctatggtc agcgaatcca cgataaatgc tatcgccgcg cccacttcga cgccggagag
    28981 ttcgtccaga gttgggatga tgacgctgcc cgcaaaggtt actgcctgta caaaatgggc
    29041 tgcaaagggc ctaccaccta taacgcctgt tcctccacac gctggaatga tggcgtttct
    29101 ttcccaatcc agtctggtca cggctgcctg ggctgtgcgg aaaatggttt ctgggatcgc
    29161 ggttcgttct acagccgcgt ggtcgatatt ccgcaaatgg gtactcattc caccgccgat
    29221 accgtcggtt taaccgcgct tggcgtggtg gcagcggctg ttggtgtgca cgcagtcgcc
    29281 agcgccgttg accagcgcag acgtcataac cagcaaccta cagaaaccga acatcagcca
    29341 ggcaatgagg ataaacaggc atgagcactc agtacgaaac tcagggatac accatcaata
    29401 atgccggacg ccgcctggtg gtcgacccga ttacgcgcat cgaaggccac atgcgctgcg
    29461 aagtgaatat taacgatcag aatgtgatca ccaatgccgt ctcctgcggc accatgtttc
    29521 gcgggctgga gatcatccta caagggcgcg acccgcgcga tgcgtgggcg ttcgttgaac
    29581 gtatctgcgg cgtctgtact ggcgtacacg ccctggcttc ggtttacgcc atcgaagatg
    29641 ctatcggtat taaagtgccg gacaacgcca atatcatccg caacattatg ctggcaacgc
    29701 tctggtgcca cgatcatctg gtgcacttct atcagcttgc cgggatggac tggatcgatg
    29761 tgttagatgc gctgaaagcc gacccgcgga aaacctccga actggcgcaa agtctctcct
    29821 cttggccgaa atcatcccct ggctatttct tcgacgtaca aaaccgcctg aaaaaatttg
    29881 ttgaaggcgg gcagttgggg atcttccgca atggctactg ggggcacccg cagtacaaac
    29941 tgccgccaga agctaacctg atgggctttg cccactatct cgaagctctc gatttccagc
    30001 gtgaaattgt caaaatccac gcggtctttg gcggtaaaaa cccgcatcca aactggattg
    30061 tcggcgggat gccttgcgcc atcaacattg acgaaagcgg cgcggtcggg gcagtcaata
    30121 tggaacgcct gaacctggtg cagtcaatta tcacccgcac ggcggacttc attaacaacg
    30181 tgatgatccc cgacgcctta gccatcggtc agttcaacaa accgtggagc gaaatcggca
    30241 ctggtctttc tgataaatgc gttctcagct acggcgcatt cccggatatt gccaacgact
    30301 ttggcgagaa aagtctgctg atgcctggcg gcgcggtgat taacggcgac ttcaacaatg
    30361 tgctgccagt ggatttggtt gatccgcagc aggtgcagga gtttgtcgac cacgcctggt
    30421 atcgatatcc caacgatcag gtcgggcgtc atccgttcga tggcatcacc gacccgtggt
    30481 acaaccccgg cgatgtcaaa ggcagcgata ccaacattca gcagctgaat gaacaggaac
    30541 gctactcgtg gatcaaagcg ccacgctggc gcggtaacgc gatggaagtg gggccgctgg
    30601 cgcgcacgtt aatcgcttat cacaaaggcg atgctgcgac cgttgagtcg gtcgatcgca
    30661 tgatgtcggc gttgaacctg ccgctttccg gtatccagtc aacgttaggc cgcattttgt
    30721 gccgcgcgca cgaagcgcag tgggccgcag gtaagttgca gtatttcttc gacaagctga
    30781 tgaccaacct gaaaaacggc aatctcgcca ctgcttccac ggaaaaatgg gaacctgcaa
    30841 cctagccgac agagtgccgt ggtgtcggtt ttaccgaagc gccgcgcggg gcgttaggcc
    30901 actgggccgc cattcgcgat ggcaagattg atctctacca gtgcgtggtg ccgaccacct
    30961 ggaacgccag cccgcgcgat cccaaagggc agattggcgc ttatgaagcg gcgctgatga
    31021 acaccaaaat ggcgatcccc gagcaaccgc tggagatcct gcgtactctg cacagctttg
    31081 acccgtgcct cgcctgttca acacacgtgc tgggcgacga cggtagcgag ctgatctccg
    31141 tgcaggtgcg ttaacagcga aggagaatca tcatgcaaca gaaaagcgac aacgttgtca
    31201 gccactatgt ctttgaagcg ccagtccgca tctggcactg gttgacggtg ttatgcatgg
    31261 cggtgttgat ggtcaccgga tactttatcg gcaagccgct accttccgtc agcggcgagg
    31321 cgacgtatct gttctatatg ggctacatca ggttaattca cttcagcgcc gggatggttt
    31381 ttaccgtggt tttgctgatg cggatctact gggcttttgt tggcaatcga tactcccgcg
    31441 agctgtttat cgtgccggta tggcgtaaaa gctggtggca gggcgtgtgg tatgaaatcc
    31501 gctggtatct gtttctggca aaacgtccga gtgccgatat aggccataat cccatcgccc
    31561 aggcggcgat gttcggctat ttcctgatgt cggtctttat gatcatcact ggttttgcgc
    31621 tgtacagcga acacagccag tacgctattt ttgcgccgtt ccgttatgtg gtggaatttt
    31681 tctactggac gggtggcaac tcaatggaca ttcacagctg gcatcggctg gggatgtggc
    31741 tgattggcgc gtttgtgatc ggtcatgtct acatggcgct gcgtgaagac atcatgtccg
    31801 acggcacggt gatctccacc atggtcaacg gctaccgtag ccacaaattt ggcaaaataa
    31861 gtaacaagga gtgttcatga gcgagcaacg cgtggtggtc atggggctgg gcaacctgct
    31921 gtgggccgat gaaggcttcg gcgtgcgggt ggcggaacgg ctgtatgccc attaccactg
    31981 gcccgagtat gtggagattg tcgatggcgg tactcaggga ctgaacttgc tggggtatgt
    32041 cgaaagcgcc agccatctgt tgattctcga tgccattgac tacgggctgg aacctggaac
    32101 gctgcgaacc tatgccggag aacgcattcc ggcttatctc agcgcgaaga aaatgagcct
    32161 gcatcagaac agtttctccg aagtgctggc gctggcagat atccgcggac atctgccagc
    32221 acatattgcc ctcgtcgggc tgcaacccgc gatgctcgac gactacggcg gcagcctgag
    32281 cgaactggca cgggagcaac tgctcgctgc ggaacaatcg gcgctggcgc agttggctgc
    32341 gtggggaagt gtgccgcaac tggctaatga atcgcgttgt ctcaattatg actgtctgtc
    32401 gatggaaaat tacgaaggcg ttcgcttgcg ccagtaccgg atgacacagg aggagcaggg
    32461 atgagcaacg acacgccatt tgatgcgttg tggcaacgaa tgctggcgcg cggctggacg
    32521 ccggtcagtg aatcccgtct tgacgactgg cttacgcaag cgccagacgg cgtggtgtta
    32581 ttaagcagtg acccgaaacg cacgccagag gtcagcgata atccggtaat gattggcgaa
    32641 ttactgcacg agtttcccga ctatacatgg caggtggcga ttgctgacct tgagcagagc
    32701 gaagccatcg gcgatcgctt tggcgtcttt cgctttccta ccactttagt gtttaccggc
    32761 ggaaactatc gcggcgtgct gaatggtatt cacccgtggg cggaactgat aaacctgatg
    32821 cgcgggcttg tcgaaccgca gcaggagcgt gcctcatgag cgaaactttt ttccatctgc
    32881 tggggccagg aacgcaaccg aacgatgaca gtttcagcat gaatccactg ccgatcacct
    32941 gtcaggtgaa tgatgaaccg agtatggcgg ccctggagca atgtgctcac agcccgcagg
    33001 tgattgcgct gttaaacgag ttacaacatc aactaagcga acgccagccg ccgttgggcg
    33061 aggtgctggc agtcgatctg ttaaatctca acgccgacga tcgtcacttt atcaatacgc
    33121 ttctcgggga aggggaagtg tcagtgcgca ttcagcaggc tgacgacagt aaaagtgaaa
    33181 tacaggaggc gatcttctgc ggattatggc gggtgcgcag acgtcgcggc gaaaagttgc
    33241 tggaggacaa actggaggct ggctgcgcgc cgctggcgtt gtggcaggcg gcaacgcaaa
    33301 atctcttgcc gacagattcg ctgttaccgc cgcccattga tggcctgatg aatggcctac
    33361 cgttggcgca tgagttactg gcacatgtac gtaaccccga cgcgcagccg cacagcatta
    33421 atctgacgca attacccatc agcgaggctg atcggctttt tctctcacgt ctctgtgggc
    33481 cgggaaatat tcagattcgt accattggct atggcgagag ctatatcaac gccacggggt
    33541 tacgccatgt ctggcattta cgctgtacgg acaccttaaa aggcccgtta ctggaaagtt
    33601 atgaaatctg cccaataccg gaagtggtgc tggcagcgcc agaagatttg gtcgactctg
    33661 cgcagcggct tagcgaggta tgtcagtggc tggcggaagc tgcaccgacg taaaaagacg
    33721 gtaagtatcg ctttcagtct tatgaatatc gcaatcggcg aatacctctg gtcgtagagt
    33781 ttcaggataa agagggagat ctaacattat cgggttattt ttctctcttc gcctacagga
    33841 gtgcgcatgt gggatgtcat tgatttatcg cgctggcagt ttgctctgac cgcgctgtat
    33901 cactttttat ttgtacccct taccctgggg ctgatttttt tgctggctat catggaaacc
    33961 atttacgtgg tcaccggcaa aacaatctac cgcgatatga cgcgcttctg gggtaagctc
    34021 ttcggtatca attttgctct tggcgtggct accggcctga ccatggagtt tcagtttggt
    34081 actaactggg cattctattc caactatgtg ggcgatattt ttggcgcacc gctggcgatg
    34141 gaagcattaa tggccttctt cctcgaatcc acctttgtcg ggcttttctt cttcggctgg
    34201 cagcggctga ataaatacca gcacctgctg gtgacgtggc tggtggcgtt cggttcaaat
    34261 ctctctgcat tgtggatatt gaatgccaac ggttggatgc aatacccgac cggtgcgcat
    34321 tttgatatcg acaccctacg tatggagatg accagcttca gcgagctggt ctttaacccg
    34381 gtcagccagg tgaaatttgt gcacaccgta atggcgggct acgtgaccgg ggccatgttt
    34441 attatggcga tcagcgcctg gtatttactg cgcggacggg agcgcgatgt tgcattacgc
    34501 tcgtttgcca tcggttccgt cttcggtact ctggcgatta tcggcacgct acaactcggg
    34561 gacagttctg cgtatgaagt cgcgcaagta caaccggtaa aactggcggc gatggaaggg
    34621 gagtggcaaa cggaacctgc tcctgcaccg ttccatgtgg ttgcctggcc ggaacaggat
    34681 caagagcgta acgcctttgc catcaaaatt cccgcgctgt tagggatcct cgccactcac
    34741 tcattagata aacccgtgcc gggtctgaag aatttgatgg ctgaaaccta cccacgcttg
    34801 caacgcggac gtatggcctg gctgttaatg caggaaatat cgcaaggcaa tcgtgagccg
    34861 catgtgttgc aggcattccg ggaactggaa ggtgacctgg gctacggcat gttgctctcc
    34921 cgctatgcgc cggatatgaa tcatgtcaca gccgcacagt accaggcggc gatgcgtggc
    34981 gcgatacctc aggttgcgcc ggtattctgg agtttccgca tcatggtggg ctgtggttcc
    35041 ctgctgctac tggtgatgct gattgcgctt gtccagacgc tgcgtggcaa aatcgaccag
    35101 catcgctggg tgctgaaaat ggcgctctgg agtttgccgt tgccgtggat tgcgattgaa
    35161 gccgggtggt ttatgaccga gtttggtcgt cagccgtggg cgatacagga catcttaccg
    35221 acatactccg cgcactccgc tttaaccaca ggacaactgg ctttctcact gatcatgatc
    35281 gtagggcttt acaccctgtt cttaatcgcc gaagtctacc tgatgcagaa atatgcccgt
    35341 ctggggccga gcgcgatgca gagtgaacaa ccgacgcagc aacaggggta aagaagaaaa
    35401 tcatgtttga ttatgaaaca ttgcgcttca tctggtggct gctgattggc gtgatcctgg
    35461 tggtctttat gatctccgac ggatttgaca tggggatcgg ctgtctgctg ccgctggtgg
    35521 cgcgtaatga tgatgaacgc cggatagtga taaacagcgt tggtgcacac tgggaaggca
    35581 accaggtctg gttgatcctc gctggtgggg cattatttgc cgcctggccc agagtgtatg
    35641 cagcggcgtt ttccggcttt tatgtggcga tgatcctggt gctgtgctca ctgttcttcc
    35701 gcccgctggc ctttgattat cgcggaaaaa tcgccgatgc acgctggcgt aaaatgtggg
    35761 acgccggtct ggtcatcggc agtctggtgc cgccggtagt cttcggtatc gccttcggca
    35821 acttgttgct cggcgtgccg tttgccttca caccgcaatt acgcgtggag tatctcggca
    35881 gcttctggca actgctgacg ccattccctt tattgtgcgg attgctcagc cttgggatgg
    35941 taattttgca aggtggcgtc tggttacaac tgaaaactgt tggtgtgatt catctgagtt
    36001 cacagctggc caccaaacgc gctgcactgt tggtgatgct gtgctttttg ctggcgggtt
    36061 actggctgtg ggtcggtatt gatggctttg tactgctcgc ccaggatgct aacggtcctt
    36121 ccaatccgtt aatgaaactg gtggcagtgc tacctggtgc ctggatgaat aatttcgtcg
    36181 aatcgcccgt tttgtggatc ttcccgctgc tggggttctt ctgcccattg ctgacggtga
    36241 tggcgattta tcgtggtcgc ccaggttggg gatttttaat ggcgtcattg atgcaatttg
    36301 gcgtgatttt cacggcaggc atcacgctgt tccccttcgt catgccgtca agcgtgagtc
    36361 cgatctccag cctgacgttg tgggacagca cttccagcca gctgacgctg agcattatgt
    36421 tggtaatcgt gctgatattt ttgcccattg tgttgctcta cactctctgg agctactaca
    36481 aaatgtgggg gcgcatgaca acagaaactc tccgccgtaa cgaaaacgag ttgtactaag
    36541 gagcaggaac aatgtggtat ttactttggt tcgtcggcat tttgttgatg tgttcgctct
    36601 ccacccttgt gttggtatgg ctggacccgc gtctgaaaag ttaacgaacg taggcctgat
    36661 gcggcgcatt agcatcgcat caggcaatca ataatgtcag atatgaaaag cggaaacata
    36721 tcgatgaaag cgatcttaat cccattttta tctcttctga ttccgttaac ctcgcaatct
    36781 gcattcgctc agagtgagcc ggagctgaag ctggaaagtg tggtgattgt cagtcgtcat
    36841 ggtgtgcgtg ctccaaccaa ggccacgcaa ctgatgcagg atgtcacccc agacgcatgg
    36901 ccaacctggc cggtaaaact gggttggctg acaccgcgcg gtggtgagct aatcgcctat
    36961 ttcggacatt accaacgcca gcgtctggtg gccgacggat tgctggcaaa aaagggctgt
    37021 ccgcagcctg gtcaggtcgc gattattgct gatgtcgacg agcgtacccg taaaacaggc
    37081 gaagccttcg ccgccgggct ggcacctgac tgtgcaataa ccgtacatac ccaggcagat
    37141 acgtccagtc ccgatccgtt atttaatcct ctaaaaactg gcgtttgcca actggataat
    37201 gcgaacgtga ctgacgcgat cctcagcagg gcaggagggt caattgctga ctttaccggg
    37261 catcggcaaa cggcgtttcg cgaactggaa cgggtgctta attttccgca atcaaacttg
    37321 tgccttaaac gtgagaaaca ggacgaaagc tgttcattaa cgcaggcatt accatcggaa
    37381 ctcaaggtga gcgccgacaa tgtctcatta accggtgcgg taagcctcgc atcaatgctg
    37441 acggagatat ttctcctgca acaagcacag ggaatgccag agccggggtg gggaaggatc
    37501 accgattcac accagtggaa caccttgcta agtttgcata acgcgcaatt ttatttgcta
    37561 caacgcacgc cagaggttgc ccgcagccgc gccaccccgt tattggattt gatcatggca
    37621 gcgttgacgc cccatccacc gcaaaaacag gcgtatggtg tgacattacc cacttcagta
    37681 ctgtttattg ccggacacga tactaatctg gcaaatctcg gcggcgcact ggagctcaac
    37741 tggacgcttc ccggtcagcc ggataacacg ccgccaggtg gtgaactggt gtttgaacgc
    37801 tggcgtcggc taagcgataa cagccagtgg attcaggttt cgctggtctt ccagacttta
    37861 cagcagatgc gtgataaaac gccgctgtca ttaaatacgc cgcccggaga ggtgaaactg
    37921 accctggcag gatgtgaaga gcgaaatgcg cagggcatgt gttcgttggc aggttttacg
    37981 caaatcgtga atgaagcacg cataccggcg tgcagtttgt aatgcataaa aaagagcatt
    38041 cagttacctg aatgctctga ggctgatgac aaacgaagaa ctgtctaatg cgtagaccgg
    38101 aaaaggcgtt cacgccgcat ccggccactt tcagttttac tctttctcgg agtaactata
    38161 accgtaatag ttatagccgt aactgtaagc ggtgctggcg cgtttaatca caccattgag
    38221 gatagcgcct ttaatattga cgcctgcctg ttccagacgc tgcattgaca aactcacctc
    38281 tttggcggtg ttcaagccaa aacgcgcaac cagcaggctg gtgccaacag aacgccccac
    38341 gaccgcggca tcactcaccg ccagcatcgg cggcgtatcg acaatcacca gatcgtaatg
    38401 gtcgttcgcc cattccagta attgacgcat ccgatcgcgc atcagcagtt cagacgggtt
    38461 aggtggcacc tgaccgcgag taatcacatc aaagcctcct ttgccaaaat gctggatcac
    38521 tttgttgagc tcatctttac ctgccagata ttccgacaag ccatgttcat tactcacggt
    38581 aaacaggtta tgcgaataac cacggcgtaa gtcggcatca ataaataaca ctttttgatc
    38641 ggactgggcg atcaccgctg ccagagttga actgacaaac gttttaccac tgtctggcgt
    38701 cgcaccggtg atcatcagaa tgttattctc cgtctccatc atagcgaagt gcagactggt
    38761 tcgtagcgca cgtacggctt ccacagcaga atccgccggg ttatccaccg ccaggaaggg
    38821 gatattttta gtacgatggc gctgctgatt agaaaataaa tttttcttac gcagacgggt
    38881 acgtttatcc agccactcgg acattgggat agtggcataa acgctgatgc cgtgctcttc
    38941 cagttgttcc ggggcttcta caccacgacg caacatcgca cgcgccagca cggcacccac
    39001 cgaaataaac aggccaagaa taaaaccaag caccacgttc aacgcttttt tcggtttcac
    39061 tggctgcggc tgagtgactg ctgggtcgat aatccgcacg ttaccaatgg cactggattt
    39121 cgaaatactc aactcctgct ggcggttaag taattgcaga tataccgcac ggcccgcttc
    39181 tacgtcacgg cttaaacgta acacttcctg ttgagtggaa ggcattgccg atacccgctt
    39241 attcaggcgt ttgcgttctt gctccagcgt ctggcgtttt tccagcagcg cacgataagt
    39301 tgggtgatct ttcttataca gctgggagat ctctgcctcg cggaaagtca gctcattgag
    39361 ttgattatca acgttcacaa tctgctcaag aacggctttg gcttctaggt taaggtcaac
    39421 cgaatcgcgc tgctggcgat aaacgttgag tttttcttcc gcctggtcca gctcgctgcg
    39481 cacttcaggc aactggcgct gtaagaattc aaggctttgt gaatcctgcg ccgcctggcg
    39541 agcgatattc tgttgcaaat agttgttagc gatgctgttc agaatacgag taatcaactg
    39601 gggatcatca ccagtcatgg taagttccag catcccgctt tctttactgc gttcgctaac
    39661 ggtaaaggtt tcctgcaatg cgttaatcgc ttccagttcg gtacgctggc tcaggacaaa
    39721 ctgtgttcct ggtttggcct taatgtccgc gatagtcagc gcaacgccat ctttttccag
    39781 acgctggccg accataccat tgacggtgaa ctcttcacct tccagtgtat agtggccgtt
    39841 ttccccaacc gtgagtgtca gttgctgatc ctgaccattc agttgtggaa tatgcatcca
    39901 gctgatcgcc agctcacctg gtttttcttt ggttaatctc gcccagccgc gacccacaat
    39961 cggaaaatac ttctgctcaa ctatgtcgcg cagattcagt tcagcaatgg ttttaccgag
    40021 aatcatgcgc gattgcagca gttggatctc cggtgcagac tcgggcgatg agttagggat
    40081 catatcgctc aggccgctga gaatggcgtt gccctgtttt tgctcaacct ggaccagagt
    40141 atctgcctga taaattggtg tgcttaacag cgagtaagcg acagcgatca gcgtgaataa
    40201 cgcggttacg ctgataataa acttacggtg atcccataac tcgccgacca gacgaagcag
    40261 atcgatctca ttttcctgag tgctgcctgg tggcgtattc atatttttag ttgtcatcgt
    40321 attttataaa ctcaaattac cggctgaggc gcttcgccca ttcctgactg gcgcgctcca
    40381 acataccgta gacatgttca aatgcgtcct gacttttacg atagggatcc gggatctctt
    40441 tctgttccag ccattgccca aacagcattg tcttcccgcg gacctcggga gcgattgcgg
    40501 taacctgagc aatatgctct gactccattg ccagaatcag atcgtaattt cgtgccatct
    40561 cagcagtgag cttacgtccg gcatgtcctt caagagatac gccatgatta gcggcaacat
    40621 ctgctgctgt cgcatctgca gggtgtttta ccagaccatg aacacctgcc gatttgactt
    40681 ttacgcctgg cagacgttta cgcagcaagc gctcgccaat gggcgaacgg caaatgttgc
    40741 cggtacaaac caccaggatg gagttaaatt ttagttgggc catgtttgaa tccaccgtga
    40801 agtctctgtc aggtcatgca ccccggaaat cgtcggtacc agcagagaaa tcacacggtt
    40861 ccaacgagcc agcggcgcgg tagtgacata aacaatgtcg taaggttcaa gctggaattc
    40921 cgttccgagt atcattgccg atgcgtcctt cgcattcagc tgataaatat tggcgatttt
    40981 gccattctgc ttgttttgcg ttgcacgaat aacaaaaatc cccgtcgcat cagcgacatc
    41041 ctgattcata ccctcagcgt tacccagcgc ttccgccagg gtcataccgc tgcggtccat
    41101 tttcagcgtg ctctgtttac ccacttcacc catcacgaag actttcagat catcgttgcg
    41161 cggaataaat aaaatatcgc ccgggtgcag cagtttgttc tggcgcaagt cgccacgctg
    41221 catcagcgca tagaggttca ctttggtctt tacgccattc tgggtgagca ccacgttgcg
    41281 ccagtctgca tctgcggtca gaccgcccgc ggcgttaatc gcatccatga tggtcagagg
    41341 aatattggta atcggctgct gacccgattt gctgacttcg ccggtgacgt acgctttttg
    41401 cgatcggaac gccgcgacgc tgacatcgac ttgcgggctt tcaatgactg aatcgagacg
    41461 cgctgtaatc tcgttgcgta cttgggtaag tgttttcccg gccactttca ggcgaccaat
    41521 ataggggtag aaaatcgcac catcggcgtt aacccagttg ccggtatcac tggcgctacg
    41581 gtattgccct gcgggggtgg ttagttccgg gtgatcccag accgtaacca tcaacacatc
    41641 accaatcccg atacgatatt catagtttgc gatttgctgc tccagctccg ggttagcctg
    41701 cgacataatc ggtttggcgc gcaactgatc aatcaatcct ggcgtgacgg gatagatatt
    41761 gaccattttg tccaggtcat actgattgtc aggtagttca atgacatcct tgttcctggt
    41821 cgataaattc tgaccaggaa caagggtaca tgctgtcaaa gacagaacag ccaatgtcag
    41881 taccgaaaac ttaaaaatgt tctttttcat tggtttatat ttatcagtca atgtaatgtt
    41941 atgaattacg tcaggttatt gtccaaccgg tacttctcgc tctgccgtca ttggatagag
    42001 ctggtatttg cgtgacagca tttgtccacc atcacgcgtc aatggtgtcc acgaaaccac
    42061 cgcgcggttg cggttaggtc caatggtcat caagtcgaat ggaatcgaga tataaaaacc
    42121 tttactaaag ccgccttcgc cgtagtcatc tttagatacg ttactgattg ccgcccatac
    42181 ccctaccgcc acgccgctgt caaagcgttt ggcgacgtcg atcgttgctc ctttatcttt
    42241 tgccagatat tgcccaacgc taagtttcat cagtacgcca ttgagcgtcg gcgggttcca
    42301 gtaagccgtc acgaaaccag ttggcgtgga ataatcggtg aagcgcatca tgttgtccca
    42361 gtcacgttgc ttcacgtagt taacgtccac acccagcgcc cagctggcat ctagcgggcg
    42421 ataaagcagc tcggaaccga caccggcgta catcgtttcc agataaccgc catacacctg
    42481 gccatagaaa ccattgccta agtcggcaaa gtagttcgcc tgcaagttgt tgagataaac
    42541 gtcattgcga acgtaatcac ggatatgcgt gcgcacgcgg ggcagggtag agtccgcggg
    42601 caacagcgaa gacttaaact tgtcgtagtt gttgtaaata ttggtgaaaa taccgccatc
    42661 aagcagcagg tggtcggtaa accagtagcg ggcactggac atcagcccca gctggaacat
    42721 atagaaatct tccgggccgc ccagcgactg tgaaagtgtt gggttgaaag agtagctaaa
    42781 gcgatcttca cgaatacggt agccccgacc aaaggcagaa agatcttctg cttcaacacg
    42841 ttgttgttga agttgctctg attgaccagg cgctgtacca gccagctgtt tgcgcaggct
    42901 ggctacgtcg gtttcggtag tcaccatcgc catatgctcg cgcttttgcg tcacgctaat
    42961 cttctcaacg ccttgcggca ggttattcac cagaatccgg ttggcacgat cgaccgcttc
    43021 gcgagaatca cggtatttgt attgttgacc agacatatac agcgtcttat cgcgcagctg
    43081 aatttccggt gcttcaaaac ctgcgttgta cttcagcgcg gtaagttggt tcgctactgt
    43141 ggtgtactgc aatccttcag attcaggcgc aggttgatat gccggttttg gcgtatcgcg
    43201 cagggcaggg cgcagatcgt tgaaattggt ccgtaacgtg aagccaaaca tcaacgtgtt
    43261 accgcgttca taactcaggt tgagatctgc ccagctggca gcgcgataaa ctgcgccgac
    43321 gttgaaatgg cttgcctgag gcagtttgcc agcgaaatca ttctggtaat tgttgccatc
    43381 gtattcgagt ttcagacgca ggggattcca cggcgtttga tactcaatgc cgccaaagat
    43441 ggaagccggg ccacgaaaga tatcgctaaa gctgatatcg cccgcatcgt gagactctgc
    43501 gcgatgacaa tatttatcgt tcacccggca aaacgggttg gtaatattgc ccgcattacc
    43561 ggcgtagccc catgccatcc cgagggtgaa atcaaatggc cccgcttgct tgctggccac
    43621 cagatactca ccgtcaaaca gacccgtacc agcaatatca cgtttaccaa acgccacttg
    43681 cggtagccag taaccttctt cccacaggcg aagtttaaaa tcgaatgatt tgtctttgta
    43741 tgactgatcg ccgctgaaat cttcccactg gctatatttg cgtgtgcgca catccgtata
    43801 acgaatggtg ccttccagcc atgggaacag cgccacggag gtggagtaga accggtattg
    43861 atcgttatcc cggtagttga cgctgaattc accttccggt gcgatgcgcg catttggcat
    43921 ctgcaacaat cctgtgccgc caaagtctga ttgcgacgaa cccagcggat ccgggtaggt
    43981 taatacttca gcatgacagg cactggagac ggcaatggcc aggcagctta aaagataaga
    44041 attcttcttc atcagtcagg aacacgttgc gttaaaacag acacaatctg gtcatttaaa
    44101 tcagcatatt tttcgggcag tacatgcgca gaaaagccca accaaagctg gctgccaggc
    44161 ggtgggtcca catgtctttt attccacagg gcaacagggg cgacgacagt ctcaccctca
    44221 ggcgtaatca ccataacgtt attcttgtcc gcgcctgcaa ggcgggggtg atcttgcaga
    44281 taatcggtaa cgctacggcc tgcctgccag ggcaattgcc cggccccaga aaccgcaccc
    44341 agcagagtaa tagtcaccgg acgctgtacg gtatagagcg tatagtcccc gaccaacggg
    44401 ggattgctgt tctcatccac tcgaacaaaa tcagggtcca gtttgaccgg taagcgacca
    44461 gtgatattga gattgagtaa ctgctggcgc acagatttaa tcgttgccgc cacatcgtcg
    44521 tcagcttctg cttcccagga agcaagctgt gccatgacat gttggtagtc tttaagcgct
    44581 ttagctttcg ccgcagagtc ggtcagcaag gcaccaggcc accagaggcg atcgcgcagt
    44641 tgcggttgtg tcaccaactg gacaacattt tccatggggc caacggaaag tgtctgttgt
    44701 tcgccaggca gataaatagt caccgttcct tgcgcaaagg catggggtgt cattacgtaa
    44761 agtacgctgg caatgaaata cgactgtaat ttattcatgg tgcgggttta agaaacgtca
    44821 tttctacggg aataacccct gcgcctaaca tttgccgact ttgacgaacc tggccagtag
    44881 ccgaatcgac ccagaatgtg ttttgccact gtttttctgg ccgcgtggaa gtcacctctt
    44941 cctgccagac attacacagc acattgcgac ccgcaatatt cagcgtctct aatccagcaa
    45001 aggaaaaagt agaactcagg gtcgcagagc gaaaatggtt gtcttcactc cagagaatat
    45061 cgcgcgtcca gcggctgcca tcttttattg ccagcgcgtt acgcagaggg tcctgcccgg
    45121 aatttgtcac ttccagcaga ttattattaa gtttgacggt ttttaaaaga cgtccattgt
    45181 gggtaaccag catggcgtta tcctgggata accatttgct ttgttcttgt tctatatatc
    45241 ccagtaccac aaagattcgt tgcccttcat taaggcgtaa atacatcgtg gaataaggca
    45301 acgcctggat ctgctgatcc gctacggtga tatcctgatt atcgaaaagg ctggcgcgaa
    45361 atgtatcgac catactttgc tggctgtgcg tacatcccgc aagaaatagt gcgaaaatcg
    45421 ataaaataag agggcgcacc tttaatcctt gaaaggttaa ttaaaaaaat gcaaatcttt
    45481 aaagcccggt acgaatatcg caaccgggta tcatttaact ttaatttcga cgcgttaaag
    45541 cagtattagc gtgtagtgga cgtggtggtt gaggtgttat gagaaccgcc atcgccactg
    45601 tcatttgctg caacaactgc caacgtcgcc acaccaacag ccgttgccac accgacaact
    45661 gtcgccgtgc cgacagcgcc agcagccacg ccaccagtgg tagtagcagt cgtggttgcg
    45721 ccggtagtgg tcgttgtggt gccagtagta cccgtcgttg cctcggtccc gtttgttgct
    45781 tcaggggcag caaacgcagc tggcgtcgtc aacatgaagg ccataaggat tgcagaaagc
    45841 ttgtgtttca taacttttcc tttattcatc gcatggacaa tacgtacgct tgagatcagg
    45901 attgtctact ttgagtataa catccttgtg aaatctccct ttcctcatac cgcttgcact
    45961 atatactgcg ggtaggaaag gcgcgcagag ggaaatataa gattgttaac tatccccctc
    46021 tggaaatacg acttgtgagc ataagataaa tcttagcaaa atacaaatta aagataagga
    46081 aattgttacg aaagctatta attattgctg gtaatatagt ttcaagtggt actataactg
    46141 gctgttaaat ggcatttata actattaggt gcagagatat tcgcttaaat ggattagttt
    46201 ctttgtggaa aagtaactga tgttataata tatgatgttg actattgcac tattccaata
    46261 aaaccagtca gctttaaaca agcagcgtca tattaagaga gataaacatt tgccgctgtt
    46321 ggtcctcgca ggccatttac gcggcaaaat tccacacgta atcctggtat aagcacttct
    46381 gcgtcgcggg gagtgaatgc ggaaatatgg acctgaactt ctttacgacc gtcggagggg
    46441 ataatgaatc ctttgccgct tttgcgatca aaggttttga caattcctgt cattttacgg
    46501 gacaaacaaa ttccttactg aaaatactgc gctgcactat acggggttaa taaaataaag
    46561 ccagcgatat ttaagaccgc cggacggcta aaataaaatt tgcttaatct caattatcat
    46621 gcgttaatag ctgcgtcggt ttgaaagaca gacagcatac aaagtagttt actaaagcag
    46681 ttctcattat caggcattat ccccttcttt tgagtctctc tcctgaacac taagtagttt
    46741 ctgtattaaa gccctgtttg ccgaaaggcc caaaatgaag gaagtaaaat atgtctaata
    46801 aaatgactgg tttagtaaaa tggtttaacg cagataaagg ttttggcttt atcactcctg
    46861 atgatggcag caaagacgtt ttcgtccatt tcactgccat ccagagcaat gaattccgca
    46921 cgctgaacga aaatcagaaa gttgaatttt ctattgagca ggggcaacgt ggccccgcgg
    46981 cagcgaacgt tgttacgctc taaggttgcc gttattactc aacatctcca tttccgctgt
    47041 ccatgttgtc atggttcaca gtaccgcaca tcggcattcg atgtgacgga gcgaaatcct
    47101 ttgggcgcta agtgtatttt ttgtaaatcg acgatgatca cctttgataa cgtcacgctg
    47161 caaatacgca ctgaccatgc gccgctggat ttcacaaaat aatatcaggc tccctcg
//
LOCUS       DADMJB010000008        43879 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.008, whole genome shotgun sequence.
ACCESSION   DADMJB010000008 DADMJB010000000
VERSION     DADMJB010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 43879)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 43879)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..43879
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.008"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            83..625
                     /gene="lpfE"
                     /locus_tag="JN078_000462"
     CDS             83..625
                     /gene="lpfE"
                     /locus_tag="JN078_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000831423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long polar fimbrial protein LpfE"
                     /protein_id="HAY9039775.1"
                     /translation="MKRTILALCLLPLSFSSFAATTDLGPKGTLKFTLKISQGACELV
                     KDSVEVDMGTAVLKKPVRIGTEINPTPFSIGLKNCSEVVRAYVTMDGTPNADDSNLFA
                     LDAGGATGVGLKIKTAAGVQQFPENTTPIPVEFAINGDGAHQLNYIASYVPIRADATI
                     GRADATVDFTVQYSTNNFTS"
     gene            865..2556
                     /gene="eptB"
                     /locus_tag="JN078_000463"
     CDS             865..2556
                     /gene="eptB"
                     /locus_tag="JN078_000463"
                     /EC_number="2.7.8.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418002.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kdo(2)-lipid A phosphoethanolamine
                     7''-transferase"
                     /protein_id="HAY9039776.1"
                     /translation="MRYIKSITQQKLSFLLAIYIGLFMNGAVFYRRFGSYAHDFTVWK
                     GVSAVVELAATVLVTFFLLRLLSLFGRRSWRILASLVVLFSAGASYYMTFLNVVIGYG
                     IIASVMTTDIDLSKEVVGLNFILWLIAVSALPLILIWNNRCRYTLLRQLRTPGQRIRS
                     LAVVVLAGIMVWAPIRLLDIQQKKVERATGVDLPSYGGVVANSYLPSNWLSALGLYAW
                     ARVDESSDNNSLLNPAKKFTYQAPQNVDDTYVVFIIGETTRWDHMGIFGYERNTTPKL
                     AQEKNLAAFRGYSCDTATKLSLRCMFVRQGGAEDNPQRTLKEQNIFAVLKQLGFSSDL
                     YAMQSEMWFYSNTMADNIAYREQIGAEPRNRGKPVDDMLLVDEMQQSLGRNPDGKHLI
                     ILHTKGSHFNYTQRYPRSFAQWKPECIGVDSGCTKAQMINSYDNSVTYVDHFISSVID
                     QVRDKKAIVFYAADHGESINEREHLHGTPRELAPPEQFRVPMMVWMSDKYLENPANAQ
                     AFAQLKKEADMKVPRRHVELYDTIMGCLGYTSPDGGINENNNWCHIPQAKEAAAN"
     gene            2648..2724
                     /locus_tag="JN078_000464"
     tRNA            2648..2724
                     /locus_tag="JN078_000464"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2682..2684,aa:Pro,seq:cgg)
     gene            3495..3725
                     /locus_tag="JN078_000465"
     CDS             3495..3725
                     /locus_tag="JN078_000465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9039777.1"
                     /translation="MLKLGLSLVAMTVAASVQAKTLVYCSEGSPEGFNPQLFTSGTTY
                     DASSVPLYNRLVEFKIGTTEVIPGLAEKWEVS"
     gene            3735..5075
                     /locus_tag="JN078_000466"
     CDS             3735..5075
                     /locus_tag="JN078_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001488423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HAY9039778.1"
                     /translation="MYTFHLRKGVKWHDNKEFKPTRELNADDVVFSFDRQKNAQNPYH
                     KVSGGSYEYFEGMGLPELISEVKKVDDNTVQFVLTRPEAPFLADLAMDFASILSKEYA
                     DAMMKAGTPEKLDLNPIGTGPFQLQQYQKDSRIRYKAFDGYWGTKPQIDTLVFSITPD
                     ASVRYAKLQKNECQVMQYPNPADIARMKQDKSINLMEMPGLNVGYLSYNVQKKPLDDV
                     KVRQALTYAVNKDAIIKAVYQGAGVSAKNLIPPTMWGYNDDVQDYTYDPEKAKALLKE
                     AGLEKGFSIDLWAMPVQRPYNPNARCMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKD
                     GEHQTVMMGWTGDNGDPDNFFATLFSCAASEQGSNYSKWCYKPFEDLIQPARATDDHN
                     KRVELYKQSQVVMHDQAPALIIAHSTVFEPVRKEVKGYVVDPLGKHHFENVSIE"
     gene            5383..6402
                     /gene="dppB"
                     /locus_tag="JN078_000467"
     CDS             5383..6402
                     /gene="dppB"
                     /locus_tag="JN078_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter permease DppB"
                     /protein_id="HAY9039779.1"
                     /translation="MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGI
                     SPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLEL
                     GVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW
                     NLTPASGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLA
                     VIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLA
                     GAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPR
                     IRHKK"
     gene            6412..7314
                     /gene="dppC"
                     /locus_tag="JN078_000468"
     CDS             6412..7314
                     /gene="dppC"
                     /locus_tag="JN078_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010426221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter permease DppC"
                     /protein_id="HAY9039780.1"
                     /translation="MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIVLF
                     IAIFANWIAPYNPAEQFRDALLAPPAWQEGGSMAHLLGTDDVGRDMLSRLMYGARLSL
                     LVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS
                     IGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAP
                     LIVQASLGFSNAILDIAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAI
                     LLTVLAFNLMGDGLRDALDPKLKQ"
     gene            7325..8308
                     /gene="dppD"
                     /locus_tag="JN078_000469"
     CDS             7325..8308
                     /gene="dppD"
                     /locus_tag="JN078_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HAY9039781.1"
                     /translation="MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGS
                     GKSVSSLAIMGLIDYPGRVMAEKLVFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSL
                     NPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
                     RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVA
                     EAAHKIIVMYAGQVVETGDAHAIFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPG
                     KYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLDDAGRPTL"
     gene            8305..9309
                     /gene="dppF"
                     /locus_tag="JN078_000470"
     CDS             8305..9309
                     /gene="dppF"
                     /locus_tag="JN078_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP binding subunit
                     DppF"
                     /protein_id="HAY9039782.1"
                     /translation="MSTQEATLQQPLLQAIDLKKHYPVKKGMFAPERLVKALDGVSFN
                     LERGKTLAVVGESGCGKSTLGRLLTMIETPTGGELYYQGQDLLKHDPQAQKLRRQKIQ
                     IVFQNPYGSLNPRKKVGQILEEPLLINTSLSKEQRREKALSMMAKVGLKTEHYDRYPH
                     MFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFI
                     SHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNPRHPYTQALLSATPRLNPDDRRER
                     IKLSGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQLKDYGGQLVACFAVDQDENPQR
                     "
     gene            complement(9339..10610)
                     /locus_tag="JN078_000471"
     CDS             complement(9339..10610)
                     /locus_tag="JN078_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HAY9039783.1"
                     /translation="MQHNTLSKHNQKLPFTRYDFGWVLLCIGMAIGAGTVLMPVQIGL
                     KGIWVFITAAIIAYPATWVVQDIYLKTLSESDSCNDYTDIISHYLGKNWGIFLGVIYF
                     LMIIHGIFIYSLSVVFDSASYLKTFGLTDADLSQSLLYKVAIFAVLVAIASGGERLLF
                     KISGPMVVVKVGIIVVFGFAMIPHWNFANITAFPQASVFFRDVLLTIPFCFFSAVFIQ
                     VLNPMNIAYRKREADKVLATRLALRTHRISYITLIAVILFFAFSFTFSISHEEAVSAF
                     EQNISALALAAQVIPGHIIHITSTVLNIFAVLTAFFGIYLGFHEAIKGIILNLLSRII
                     DTKKINSRMLTLAICAFIVITLTIWVSFRVSVLVFFQLGSPLYGIVSCLIPFFLIYKV
                     AQLEKLRGFKAWLILLYGILLCLSPLLKLIE"
     gene            11086..11193
                     /locus_tag="JN078_000472"
     CDS             11086..11193
                     /locus_tag="JN078_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin Ldr family
                     protein"
                     /protein_id="HAY9039784.1"
                     /translation="MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK"
     gene            complement(11280..12959)
                     /gene="bcsG"
                     /locus_tag="JN078_000473"
     CDS             complement(11280..12959)
                     /gene="bcsG"
                     /locus_tag="JN078_000473"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsG"
                     /protein_id="HAY9039785.1"
                     /translation="MTQFTQNTAMPSSLWQYWRGLSGWNFYFLVKFGLLWAGYLNFHP
                     LLNLVFAAFLLMPIPRYSLHRLRHWIALPIGFALFWHDTWLPGPESIMSQGSQVAGFS
                     TDYLIDLVTRFINWQMIGAIFVLLVAWLFLSQWIRITVFVVAILLWLNVLTLAGPSFS
                     LWPAGQPTTTVTTTGGNAAATVETTGGAPVVGDMPAQTTPPTTANLNAWLNNFYNAEA
                     KRKSTFPSSLPADAQPFELLVINICSLSWSDIEAAGLMSHPLWSHFDIEFKNFNSATS
                     YSGPAAIRLLRASCGQTSHTNLYQPANNDCYLFDNLSKLGFTQHLMMGHNGQFGGFLK
                     EVRENGGMQTELMDQTNLPVILLGFDGSPVYDDTTVLNRWLDVTEKDKNSRSATFYNT
                     LPLHDGNHYPGVSKTADYKARAQKFFDELDAFFTELEKSGRKVMVVVVPEHGGALKGD
                     RMQVSGLRDIPSPSITDVPVGVKFFGMKAPHQGAPIVIDQPSSFLAISDLVVRVLDGK
                     IFTEDNVDWKKLTSGLPQTAPVSENSNAVVIQYQDKPYVRLNGGDWVPYPQ"
     gene            complement(12956..13147)
                     /gene="bcsF"
                     /locus_tag="JN078_000474"
     CDS             complement(12956..13147)
                     /gene="bcsF"
                     /locus_tag="JN078_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417994.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsF"
                     /protein_id="HAY9039786.1"
                     /translation="MMTISDIIEIIVVCALIFFPLGYLARHSLRRIRDTLRLFFAKPR
                     YVKPAGTLRRTEKARATKK"
     gene            complement(13144..14715)
                     /gene="bcsE"
                     /locus_tag="JN078_000475"
     CDS             complement(13144..14715)
                     /gene="bcsE"
                     /locus_tag="JN078_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsE"
                     /protein_id="HAY9039787.1"
                     /translation="MRDIVGPVFSIGISSLWDELRHMPAGGVWWFNVDRHEDAISLAN
                     QTIASQAETAHVAVISMDSDPAKIFQLDDYQGPEKIKLFSMLNHEKGLYYLTRDLQCS
                     IDPHNYLFILVCANNAWQNIPAERLRSWLDKMNKWSRLTHCSLLVINPGNNNDKQFSL
                     LLEEYRSLFGLASLRFQGDQHLLDIAFWCNEKGVSARQQLSVQQQNGIWTLVQSEEAE
                     IQPRSDEKRILSNVAVLEGAPPLSEHWQLFNNNEVLFNEARTAQAATVVFSLQQNAQI
                     EPLARSIHTLRRQRGSAMKILVRENTASLRATDERLLLACGANMVIPWNAPLSRCLTM
                     IESVQGQKFSRYVPEDITTLLSMTQPLKLRGFQKWDVFCNAVNNMMNNPLLPAHGKGV
                     LVALRPVPGIRVEQALTLCRPNRTGDIMTIGGNRLVLFLSFCRINDLDTALNHIFPLP
                     TGDIFSNRMVWFEDDQISAELVQMRLLAPEQWGMPLPLTQSSKPVINAEHDGRHWRRI
                     PEPMRLLDDAVERSS"
     gene            14988..15176
                     /locus_tag="JN078_000476"
     CDS             14988..15176
                     /locus_tag="JN078_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9039788.1"
                     /translation="MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQ
                     LAAALKRWPLLAEFAQQK"
     gene            15188..15940
                     /gene="bcsQ"
                     /locus_tag="JN078_000477"
     CDS             15188..15940
                     /gene="bcsQ"
                     /locus_tag="JN078_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsQ"
                     /protein_id="HAY9039789.1"
                     /translation="MAVLGLQGVRGGVGTTTITAALAWSLQMLGENVLVVDACPDNLL
                     RLSFNVDFTHRQGWARAMLDGQDWRDAGLRYTSQLDLLPFGQLSIEEQENPQHRQTRL
                     SDICSGLQQLKASGRYQWILIDLPRDASQITHQLLSLCDHSLAIVNVDANCHIRLHQQ
                     ALPDGAHILINDFRIGSQVQDDIYQLWLQSQRRLLPMLIHRDEAIAECLAAKQPVGEY
                     RSDALAAEEILTLANWCLLNYSGLKTPVGSAS"
     gene            15937..18549
                     /gene="bcsA"
                     /locus_tag="JN078_000478"
     CDS             15937..18549
                     /gene="bcsA"
                     /locus_tag="JN078_000478"
                     /EC_number="2.4.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417990.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-forming cellulose synthase catalytic
                     subunit"
                     /protein_id="HAY9039790.1"
                     /translation="MSILTRWLLIPPVNARLIGRYRDYRRHGASAFSATLGCFWMILA
                     WIFIPLEHPRWQRIRAEHKNLYPHINASRPLDPVRYLIQTCWLLIGTSRKETPKPRRR
                     AFSGLQNIRGRYHQWMNELPERVSHKTQHLDEKKELGHLSAGARRLILGIIVTFSLIL
                     ALICVTQPFNPLAQFIFLMLLWGVALIVRRMPGRFSALMLIVLSLTVSCRYIWWRYTS
                     TLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVPLPKDMSLWPSVDIF
                     VPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQNVGVKYIARTTH
                     EHAKAGNINNALKYAKGEFVSIFDCDHVPTRSFLQMTMGWFLKEKQLAMMQTPHHFFS
                     PDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIAVE
                     TVTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHIGQRIRWARGMVQIFRLDNP
                     LTGKGLKFAQRLCYVNAMFHFLSGIPRLIFLTAPLAFLLLHAYIIYAPALMIALFVLP
                     HMIHASLTNSKIQGKYRHSFWSEIYETVLAWYIAPPTLVALINPHKGKFNVTAKGGLV
                     EEEYVDWVISRPYIFLVLLNLVGVAVGIWRYFYGPPTEMLTVVVSMVWVFYNLIVLGG
                     AVAVSVESKQVRRSHRVEMTMPAAIAREDGHLFSCTVQDFSDGGLGIKINGQAQILEG
                     QKVNLLLKRGQQEYVFPTQVARVMGNEVGLKLMPLTTQQHIDFVQCTFARADTWALWQ
                     DSYPEDKPLESLLDILKLGFRGYRHLAEFAPSSVKGIFRVLTSLVSWVVSFILRRPER
                     SETAQPSDQALAQQ"
     gene            18560..20899
                     /gene="bcsB"
                     /locus_tag="JN078_000479"
     CDS             18560..20899
                     /gene="bcsB"
                     /locus_tag="JN078_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis cyclic di-GMP-binding
                     regulatory protein BcsB"
                     /protein_id="HAY9039791.1"
                     /translation="MKRKLFWICAVAMGMSAFPSFMTQATPATQPLINAEPAVAAQTE
                     QNPQVGQVMPGVQGADAPVVAQNGPSRDVKLTFAQIAPPPGSMVLRGINPNGSIEFGM
                     RSDEVVTKAMLNLEYMPSPSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQMPIN
                     PLFITDFNRVRLEFVGHYQDVCENPASTTLWLDVGRSSGLDLTYQTLNVKNDLSHFPV
                     PFFDPRDNRTNTLPMVFAGAPDVGLQQASAIVASWFGSRSGWRGQNFPVLYNQLPDRN
                     AIVFATNDKRPDFLRDHPAVKAPVIEMINHPQNPYVKLLVVFGRDDKDLLQAAKGIAQ
                     GNILFRGESVVVNEVKPLLPRKPYDAPNWVRTDRPVTFGELKTYEEQLQSSGLEPAAI
                     NVSLNLPPDLYLMRSTGIDMDINYRYTMPPVKDSSRMDISLNNQFLQSFNLSSKQEAN
                     RLLLRIPVLQGLLDGKTDVSIPALKLGATNQLRFDFEYMNPMPGGSVDNCITFQPVQN
                     HVVIGDDSTIDFSKYYHFIPMPDLRAFANAGFPFSRMADLSQTITVMPKAPNEAQMET
                     LLNTVGFIGAQTGFPAINLTVTDDGSTIQGKDADIMIIGGIPDKLKDDKQIDLLVQAT
                     ESWVKTPMRQTPFPGIVPDESDRAAETRSTLTSSGAMAAVIGFQSPYNDQRSVIALLA
                     DSPRGYEMLNDAVNDSGKRATMFGSVAVIRESGINSLRVGDVYYVGHLPWFERVWYAL
                     ANHPILLAVLAAISVILLAWVLWRLLRIISRRRLNPDNE"
     gene            20906..22012
                     /gene="bcsZ"
                     /locus_tag="JN078_000480"
     CDS             20906..22012
                     /gene="bcsZ"
                     /locus_tag="JN078_000480"
                     /EC_number="3.2.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase"
                     /protein_id="HAY9039792.1"
                     /translation="MNVLRSGIVTMLLLAAFSVQAACTWPAWEQFKKDYISQEGRVID
                     PSDARKITTSEGQSYGMFFALAANDRAAFDNILDWTQNNLAQGSLKERLPAWLWGKKE
                     NSKWEVLDSNSASDGDVWMAWSLLEAGRLWKEQRYTDIGSALLKRIAREEVVTVPGLG
                     SMLLPGKVGFAEDNSWRFNPSYLPPTLAQYFTRFGAPWTTLRETNQRLLLETAPKGFS
                     PDWVRYEKDKGWQLKAEKTLISSYDAIRVYMWVGMMPDSDPQKARMLNRFKPMATFTE
                     KNGYPPEKVDVATGKAQGKGPVGFSAAMLPFLQNRDAQAVQRQRVADNFPGSDAYYNY
                     VLTLFGQGWDQHRFRFSTKGELLPDWGQECANSH"
     gene            21994..25467
                     /gene="bcsC"
                     /locus_tag="JN078_000481"
                     /pseudo
     CDS             21994..25467
                     /gene="bcsC"
                     /locus_tag="JN078_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026226.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsC"
     gene            25549..27537
                     /gene="hmsP"
                     /locus_tag="JN078_000482"
     CDS             25549..27537
                     /gene="hmsP"
                     /locus_tag="JN078_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator HmsP"
                     /protein_id="HAY9039793.1"
                     /translation="MRVSRSLTIKQMAMVAAVVLVFVFIFCTVLLFHLVQQNRYNTAT
                     QLESIARSVREPLSSAILKGDIPEAEAILASIKPAGVVSRADVVLPNQFQALRKSFIP
                     ERPVPVMVTRLFELPVQISLGVYSLERPANPQPIAYLVLQADSFRMYKFVMSTLSTLV
                     TIYLLLSLILTVAISWCINRLILHPLRNIARELNAIPAQELVGHQLALPRLHQDDEIG
                     MLVRSYNLNQQLLQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTTALMIIT
                     CETLRDTAGVLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHA
                     ITLGQQVLTIMSERLPIERIQLRPHCSIGVAMFYGDLTAEQLYSRAISAAFTARHKGK
                     NQIQFFDPQQMEAAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQ
                     QPDGSWDLPDGLIDRIECCGLMVTVGHWVLEESCRLLAAWQERGIMLPLSVNLSALQL
                     MHPNMVADMLELLTRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDF
                     GMGYAGLRQLQHMKSLPIDVLKIDKMFVEGLPEDSSMIAAIIMLAQSLNLQMIAEGVE
                     TEAQRDWLAKAGVGIAQGFLFARPLPIEIFEESYLEEK"
     gene            27720..29006
                     /locus_tag="JN078_000483"
     CDS             27720..29006
                     /locus_tag="JN078_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate/amino acid:cation symporter"
                     /protein_id="HAY9039794.1"
                     /translation="MKTSLFKSLYFQVLTAIAIGILLGHFYPEIGEQMKPLGDGFVKL
                     IKMIIAPVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLIIVNVVQPG
                     AGMNVDPATLDAKAVAVYADQAKDQGIVAFIMDVIPASVIGAFASGNILQVLLFAVLF
                     GFALHRLGSKGQLIFNVIESFSQVIFGIINMIMRLAPIGAFGAMAFTIGKYGVGTLVQ
                     LGQLIICFYITCILFVVLVLGSIAKATGFSIFKFIRYIREELLIVLGTSSSESALPRM
                     LDKMEKLGCRKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATNSQMDIVHQITLLI
                     VLLLSSKGAAGVTGSGFIVLAATLSAVGHLPVAGLALILGIDRFMSEARALTNLVGNG
                     VATIVVAKWVKELDHKKLDDVLNNRAPDGKTHELSS"
     gene            29226..30722
                     /locus_tag="JN078_000484"
     CDS             29226..30722
                     /locus_tag="JN078_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HAY9039795.1"
                     /translation="MQGTKIRLLAGGLLMMATAGYVQADALQPDPAWQQGTLSNGLQW
                     QVLTTPQRPSDRVEIRLLVNTGSLAESTQQSGYSHAIPRIALTQSGGLDAAQARSLWQ
                     QGIDPKRPMPPVIVSYDTTLFNLSLPNNRNDLLKEALSYLANATGKLTITPETINHAL
                     QSQDMVATWPADTKEGWWRYRLKGSTLLGHDPADPLKQPVEAEKIKDFYQKWYTPDAM
                     TLLVVGNVDARSVVDQINKTFGELKGKRETPAPVPTLSPLRAEAVSIMTDAVRQDRLS
                     IMWDTPWQPIRESAALLRYWRADLAREALFWHVQQALSASNSKDIGLGFDCRVLYLRA
                     QCAINIESPNDKLNSNLNLVARELAKVRDKGLPEEEFNALVAQKKLELQKLFAAYARA
                     DTDILMGQRMRSLQNQVVDIAPEQYQKLRQDFLNSLTVEMLNQDLRQQLSNDMALILL
                     QPKGEPEFNMKALQAAWDQIMAPSTAAAATSVATDDVHPEVTDIPPAQ"
     gene            complement(30818..31966)
                     /locus_tag="JN078_000485"
     CDS             complement(30818..31966)
                     /locus_tag="JN078_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709304.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HAY9039796.1"
                     /translation="MFKSDAARTRQRLSARKGRTLPPGRGKFPHSTTESFRNTFWLKK
                     IMEHCFNIVDQQTTTAQTNANFLQIRFTTMSKKIAVIGECMIELSEKGADVKRGFGGD
                     TLNTSVYIARQVDPAALTVHYVTALGTDSFSQQMLDAWHGENVDISLTQRMENRLPGL
                     YYIETDSTGERTFYYWRNEAAAKFWLESEQSTAICEELANFDYLYLSGISLAILSPTS
                     REKLLSLLRECRANGGKVIFDNNYRPRLWASKEETQQVYQQMLECTDIAFLTLDDEDA
                     LWGQQPVEDVIARTHNAGVKEVVVKRGADSCLVSIAGEGLVDVPAVKLPKEKVIDTTA
                     AGDSFSAGYLAVRLTGGSAENAAKRGHLTASTVIQYRGAIIPREAMPA"
     gene            31979..32746
                     /gene="pdeH"
                     /locus_tag="JN078_000486"
     CDS             31979..32746
                     /gene="pdeH"
                     /locus_tag="JN078_000486"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417982.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase"
                     /protein_id="HAY9039797.1"
                     /translation="MIRQVIQRISNPEASIESLQERRFWLQCERAYTWQPIYQTCGRL
                     MAVELLTVVTHPLNPSQRLPPDRYFTEITVSHRMEVVKEQIDLLAQKADFFIEHGLLA
                     SVNIDGPTLIALRQQPKILRQIERLPWLRFELVEHIRLPKDSTFASMCEFGPLWLGDF
                     GTGMANFSALSEVRYDYIKIARELFVMLRQSPEGRTLFSQLLHLMNRYCRGVIVEGVE
                     TPEEWRDVQNSPAFAAQGWFLSRPAPIETLNTAVLAL"
     gene            32816..34876
                     /locus_tag="JN078_000487"
     CDS             32816..34876
                     /locus_tag="JN078_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417981.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HAY9039798.1"
                     /translation="MSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSA
                     ELNRPFAIRGDLGVVWERQKQETGWRSWVPWPHVHAEDIILGNPPDIPEVTMVHLPRV
                     EATLAPLALLTKTVWLPWIKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAKPSAWS
                     FRLDNILFDQGRIAIDDKVSKADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYVFG
                     LKAQGRYNGEPLTGTGKIGGMLALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGG
                     VDLRLKFSGDSLGDLYELTGVLLPDTPPFETDGRLVAKIDTEKSSVFDYRGFNGRIGD
                     SDIHGSLVYTTGKPRPKLEGDVESRQLRLADLGPLIGVDSGKGAEKSKRSEQKKGEKS
                     VQPAGKVLPYDRFETDKWDVMDADVRFKGRRIEHGSSLPISDLSTHIILKNADLRLQP
                     LKFGMAGGSIAANIHLEGDKKPMQGRADIQARRLKLKELMPDVELMQKTLGEMNGDAE
                     LRGSGNSVAALLGNSNGNLKLLMNDGLVSRNLMEIVGLNVGNYIVGAIFGDDEVRVNC
                     AAANLNIANGVARPQIFAFDTENALINVTGTASFASEQLDLTIDPESKGIRIITLRSP
                     LYVRGTFKNPQAGVKAGPLIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILS
                     QMKK"
     gene            complement(35110..36432)
                     /locus_tag="JN078_000488"
     CDS             complement(35110..36432)
                     /locus_tag="JN078_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HAY9039799.1"
                     /translation="MQATATTLDHEQEYTPINSRNKVLVASLIGTAIEFFDFYIYATA
                     AVIVFPHIFFPQGDPTAATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKATLVASLL
                     TMGISTVVIGLLPGYATIGIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRA
                     LYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVS
                     LHESPVFEKVAKAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFST
                     AAAPVGLGLPRNEVLWMLMMAVIGFGVMVPVAGLLADAFGRRKSMVIITTLLILFALF
                     AFNPLLGSGNPILVFAFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVSSI
                     LGASVAPYIAAWLQTNYGLGAVGLYLAAMAGLTLIALLLTHETQHQSL"
     gene            complement(36843..37856)
                     /gene="yhjD"
                     /locus_tag="JN078_000489"
     CDS             complement(36843..37856)
                     /gene="yhjD"
                     /locus_tag="JN078_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YhjD"
                     /protein_id="HAY9039800.1"
                     /translation="MTQENEIKRPTQDLEHEPIKQLDNSEKGGKVSQALETVTTTAEK
                     VQRQPVIAHLIRATERFNDRLGNQFGAAITYFSFLSMIPILMVSFAAGGFVLASHPML
                     LQDIFDKILQNISDPTLAATLKNTINTAVQQRTTVGLVGLAVALYSGINWMGNLREAI
                     RAQSRDVWERSPQDQEKFWVKYLRDFISLIGLLIALIVTLSITSVAGSAQQMIISALH
                     LNSIEWLKPTWRLIGLAISIFANYLLFFWIFWRLPRHRPRKKALIRGTFLAAIGFEVI
                     KIVMTYTLPSLMKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGK
                     TQP"
     gene            complement(37905..38876)
                     /locus_tag="JN078_000490"
     CDS             complement(37905..38876)
                     /locus_tag="JN078_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY9039801.1"
                     /translation="MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFS
                     RAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNLNE
                     LDGLFQQDATSISGKLRIDIPPGIAKNLLLPRLSEFLYLHPGIELELSSHDRPVDILH
                     DGFDCVIRTGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTP
                     HLGVHPLGFEVASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRA
                     GRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEHLD"
     gene            39324..39926
                     /locus_tag="JN078_000491"
     CDS             39324..39926
                     /locus_tag="JN078_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAY9039802.1"
                     /translation="MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLES
                     YPEALVMLDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVP
                     RDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNK
                     EIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLNISS"
     gene            complement(39977..41626)
                     /gene="treF"
                     /locus_tag="JN078_000492"
     CDS             complement(39977..41626)
                     /gene="treF"
                     /locus_tag="JN078_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-trehalase TreF"
                     /protein_id="HAY9039803.1"
                     /translation="MLNQKIQNPNPDELMIEVDLCYELDPYELKLDEMIEAEPEPEMI
                     EGLPASDALTPADRYLELFEHVQSAKIFPDSKTFPDCAPKMDPLDILIRYRKVRRHRD
                     FDLRKFVENHFWLPEVYSSEYVSDPQNSLKEHIDQLWPVLTREPQDHIPWSSLLALPQ
                     SYIVPGGRFSETYYWDSYFTMLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYY
                     LSRSQPPVFALMVELFEEDGVRGARRYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMP
                     DGSLLNRYWDDRDTPRDESWLEDVETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRD
                     TGRLASIRTTQFIPIDLNAFLFKLESAIANISALKGEKETEALFRQKASARRDAVKRY
                     LWDDENGIYRDYDWRREQLALFSAAAIVPLYVGMANHEQADRLANAVRSRLLTPGGIL
                     ASEYETGEQWDKPNGWAPLQWMAIQGFKMYGDDLLGDEIARSWLKTVNQFYLEQHKLI
                     EKYHIADGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP"
     gene            42030..43427
                     /gene="ccp"
                     /locus_tag="JN078_000493"
     CDS             42030..43427
                     /gene="ccp"
                     /locus_tag="JN078_000493"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c peroxidase"
                     /protein_id="HAY9039804.1"
                     /translation="MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAV
                     SENNKVLGFLREKGCDYCHTPSAELPAYYYIPGAKQLMDYDIKLGYKSFNLEAVRAAL
                     LADKPVSQSDLNKIEWVMQYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYA
                     SNDTAPEHRNEPVQPIPQKLPTDAQKVALGFALYHDPRLSADSTISCAHCHALNAGGV
                     DGRKTSIGVGGAVGPINAPTVFNSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSW
                     DEIIAKLEKDPQLKAQFLEVYPQGFSGENITDAIAEFEKTLITPDSPFDKWLRGDENA
                     LTAQQKKGYQLFKDNKCATCHGGIILGGRSFEPLGLKKDFNFGEITAADIGRMNVTKE
                     ERDKLRQKVPGLRNVALTAPYFHRGDVPTLDGAVKLMLRYQVGKELPQEDVDDIVAFL
                     HSLNGVYTPYMQDKQ"
     gene            43638..>43879
                     /locus_tag="JN078_000494"
     CDS             43638..>43879
                     /locus_tag="JN078_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HAY9039805.1"
                     /translation="MDQKLLTDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQ
                     IINDELYLDGNARQNLATFCQTWDDENVHKLMDLSI"
BASE COUNT        10543 a        11002 c        11920 g        10414 t
ORIGIN      
        1 ccgttagcac taccggaaaa ttacccgctg ccggggatta tagcggtatt gctaccatac
       61 atgtcgaact ggagtaacag tcatgaagcg aacaatactt gcgttatgcc tgctgcctct
      121 ttccttttcg tcattcgcgg caaccacgga tttagggccg aaaggaacat tgaaattcac
      181 ccttaaaatc agccagggtg cttgcgaact ggtgaaagac agcgttgagg ttgacatggg
      241 caccgcggtt ctcaaaaagc cggtaagaat cggaacggaa attaatccca ctcctttttc
      301 catcggcctg aaaaactgta gcgaagtggt cagagcctac gtgactatgg acggtacacc
      361 caatgcagac gactcaaatc tttttgcgct ggatgcgggt ggcgctacag gcgttgggct
      421 gaaaatcaaa accgctgctg gagtacaaca gttcccggaa aatacaacgc cgataccggt
      481 tgagtttgca attaacggtg atggcgcaca tcaactgaac tatatcgcca gctacgtgcc
      541 tattcgcgcc gatgcaacta ttggtcgcgc agatgcaacg gtcgacttta ctgtacagta
      601 cagtacgaat aatttcacat cttaagggcc agttaactgg ccctttttac tgctttttgt
      661 aacgctaaag tctcttttca aacttgcatt tttgtaaatt tgtgcttcat gcacactctt
      721 tccccacact ttttcgcttt gctgtggtct acttattcgc gcgtgtagat tttacttatc
      781 tgactacctc cgcacttttc ccctgccggg cctgaaaagc cgctaagcag ggtgttatca
      841 cctgtttgtc cagggtttgt ttgcatgaga tacatcaaat cgattacaca gcagaagctg
      901 agctttttgc ttgcaatcta tattggcctt tttatgaatg gcgcggtttt ttatcgccgc
      961 ttcggcagct atgcgcacga ttttaccgtc tggaaaggcg tttctgctgt tgttgaactg
     1021 gccgccaccg tactggtgac cttcttttta ctacgtcttc tatcgctgtt tggccgccgc
     1081 agctggcgta ttctggcgtc gctggtggtg ctcttttccg caggtgccag ctattacatg
     1141 accttcctta atgtggtcat tggttatggc atcatcgctt ccgtcatgac caccgatatc
     1201 gacctgtcaa aagaagttgt tggtctgaac tttattctct ggttaatcgc cgttagtgca
     1261 ttgcctctta tccttatctg gaataaccgc tgtcgctaca ccttgctccg acaactgcga
     1321 accccagggc agcgtattcg cagcctggcg gtcgtcgtac tggcgggtat tatggtttgg
     1381 gcaccgattc gtttgctgga tatccagcag aagaaagtgg agagggcgac cggcgttgat
     1441 ttgccgagtt atggcggtgt cgtagcgaac tcttatctgc catcaaactg gctttctgcg
     1501 ttggggctgt atgcctgggc gcgggtcgat gaatcttccg ataataattc attgcttaat
     1561 ccggcgaaga agtttacata ccaggctcca caaaacgttg atgatactta tgtcgtgttt
     1621 atcatcggtg aaaccacgcg ttgggaccat atgggtattt tcggctatga gcgtaatacc
     1681 acgccgaaac tggcccagga gaaaaatctg gcggcgttcc gtggttactc ctgtgatacc
     1741 gcaaccaaac tctcactgcg ttgcatgttt gtacgtcagg ggggcgcgga agataatccg
     1801 cagcgcacat taaaagaaca gaacattttc gcggttctga agcagttagg attcagttct
     1861 gacctctacg ctatgcagag cgaaatgtgg ttctacagca acacgatggc ggacaacatt
     1921 gcttatcgtg agcagattgg tgcggagcca cgtaatcgtg gcaagccggt agatgatatg
     1981 ttgctggtag acgaaatgca gcaatcgcta gggcgcaacc cggatggtaa gcatctgatc
     2041 attctgcata ccaaaggttc gcattttaac tacacccagc gttatccgcg tagcttcgcg
     2101 cagtggaagc cggaatgtat tggtgttgat agcggctgta ccaaagcgca gatgatcaac
     2161 tcctatgaca actcggtgac ctatgtggat cactttatct ccagcgtgat tgatcaggtt
     2221 cgcgataaga aagcgattgt gttctacgca gctgaccacg gtgagtcaat taatgaacgc
     2281 gagcacctgc acggcacgcc gcgtgaattg gcaccgccgg agcagttccg cgtaccgatg
     2341 atggtctgga tgtcagataa atatctggaa aatccggcca atgcgcaggc atttgcgcag
     2401 ctgaaaaaag aagccgacat gaaagtgcca cgccgtcacg tagagctgta cgataccatc
     2461 atgggttgtc ttggctatac ttcaccggat ggtggaatta acgaaaacaa caactggtgt
     2521 cacatcccgc aggcaaaaga ggcagcggct aactaagcgg cctgctgact ttctcgccga
     2581 tcaaaaggca ttttgctatt aagggattga cgagggcgta tctgcgcagt aagatgcgcc
     2641 ccgcattcgg tgattggcgc agcctggtag cgcacttcgt tcgggacgaa ggggtcggag
     2701 gttcgaatcc tctatcaccg accaaattcg aaaagcctgc tcagcgagca ggcttttttg
     2761 catttgaagc ccatgaggat gagaacctcc gggggctggg aggttcgact cgacgtaggc
     2821 ctgataagac gcgccagcgt cgcatcaggc aacggcaccg cacttattgt cggatgcggc
     2881 gcgaccgcct tattcgacca acacaccaca cattttcctg ccaactttgc gccccatatc
     2941 tcactatcca ttaacggatt tgtgacagaa accattgtct ttttttatat ttgcttaaat
     3001 ctttttttgc gttacttatg gctggcgctg gcattttccg ctgtgcgttt tagcgttcat
     3061 ggtattaatc gctcagatat ccaccttttc ctcagatttt tttcattaaa tgcataaaac
     3121 ttaatcacca aatgttgcta aatattaagc tgattgttct ggttatgttg gagtagcaca
     3181 aatttctctg ctgcaaatag ctgtttgaag ttttttaatc tttgtttgtg ggttctcacc
     3241 gttggtgtaa atcccggttg gctgtattga cgttttcaca ttctgttgac agattgtagg
     3301 tcacgagggg cattttatgg aggatccgca ctgttacact gatgttaatt agtacggcat
     3361 ccccacctca taacgttgac ccgaccgggc aaaaaacaaa aaaggtcagg tagcgacaac
     3421 ccactgcaaa gggttaaaac aacaaacatc acaattggag cagaataatg cgtatttcct
     3481 tgaaaaagtc agggatgctg aagcttggtc tcagcctggt ggctatgacc gtcgcagcaa
     3541 gtgttcaggc taaaactctg gtttattgct cagaaggctc tccggaaggg tttaacccgc
     3601 agctgtttac ctccggcacc acctatgacg cctcttccgt accgctttat aaccgcctgg
     3661 ttgaatttaa aatcggcacc actgaagtga taccgggcct cgctgaaaag tgggaagtca
     3721 gctaagacgg taaaatctat accttccatc tgcgtaaagg tgtgaagtgg cacgacaata
     3781 aagaattcaa accgacgcgt gaactgaacg ccgatgacgt ggtgttctcg ttcgaccgtc
     3841 agaaaaacgc gcaaaacccg taccataaag tctctggcgg cagctacgaa tacttcgaag
     3901 gcatgggctt gccggagctg atcagtgaag tgaaaaaggt ggacgacaac acagttcagt
     3961 tcgtactgac tcgcccggaa gcgccgttcc tcgctgatct ggcaatggac ttcgcctcta
     4021 ttctgtcaaa agaatatgct gatgcgatga tgaaagccgg tacaccggaa aaactggacc
     4081 tcaacccaat cggaaccggt ccgttccagt tacagcagta ccaaaaagat tcccgtatcc
     4141 gctacaaagc gtttgatggc tactggggca ccaaaccgca gatcgatacg ctggtcttct
     4201 ctattacccc tgatgcttcc gtgcgttacg cgaaattgca gaagaatgaa tgccaggtga
     4261 tgcagtaccc gaacccggca gatatcgctc gcatgaagca ggataaatcc atcaacctga
     4321 tggaaatgcc ggggctgaac gtcggctacc tctcgtataa cgtgcagaaa aaaccgctgg
     4381 atgacgtgaa agttcgccag gcactgacct acgcggtgaa caaagacgcg atcatcaaag
     4441 cggtttatca gggcgcgggt gtatcagcga aaaacctgat cccgccaacc atgtggggct
     4501 ataacgacga cgttcaggat tacacctacg atcctgaaaa agcgaaagcc ttgctgaaag
     4561 aagcgggtct ggaaaaaggt ttctccatcg acctgtgggc gatgccggta caacgtccgt
     4621 ataacccgaa cgctcgctgc atggcggaga tgattcaggc agactgggcg aaagtgggcg
     4681 tgcaggccaa aatcgtcacc tacgaatggg gtgagtacct caagcgtgcg aaagatggcg
     4741 aacatcagac ggtaatgatg ggctggactg gcgataacgg ggacccggat aacttcttcg
     4801 ccaccctgtt cagctgcgcc gcctctgaac aaggttctaa ctactcaaaa tggtgctaca
     4861 aaccgtttga agatctgatt caaccggcgc gtgctaccga cgaccataac aaacgcgttg
     4921 aactgtacaa gcaatcgcag gtggtgatgc acgatcaggc tccggcactg atcatcgctc
     4981 actccaccgt gtttgaaccg gtacgcaaag aagtcaaagg ctatgtggtt gatccattag
     5041 gcaaacatca cttcgaaaat gtctctatcg aataattaaa agccatacaa gactgatggt
     5101 aaaggcaaaa ctgcctgatg tgctccgctt atcaggccta cgaaaattct gcaatgtatt
     5161 gaatttacac gattttgtag gccggataag gcgttaacgc cgcatccggc ataaacaaag
     5221 cgcactttgt caacaatctg tatacccggt ggcgctgtgc ctctgcgtgc agcgccatcc
     5281 ggcagcaata cttcattctc tgtccgacaa gggcgggaat tgatttgtga gcaatacaga
     5341 cacgcagttc caggctgcgg gtcactatag agaatccggg ttatgttgca gtttattctc
     5401 cgacgtttgg gactcgtcat ccccacgttt atcggtatta cccttctcac atttgccttt
     5461 gtccacatga tcccgggcga tccggtgatg atcatggcag gcgaacgtgg gatctcccct
     5521 gagcgtcacg cgcagctgct ggctgaactc ggcttagata aaccgatgtg gcagcagtat
     5581 ctccattaca tttggggcgt aatgcacggc gatctaggca tttcaatgaa aagccgaatt
     5641 ccagtatggg aagagttcgt gccgcgcttt caggccacgc tggaacttgg cgtctgcgcg
     5701 atgatttttg ctacggcagt cggtattccg gttggtgtgc tggctgcggt taaacgcggt
     5761 tccattttcg atcacactgc agttggcctg gcgctgaccg gctactcgat gccgatcttc
     5821 tggtggggca tgatgctgat catgctggtt tcggtgcact ggaacctgac gcccgcctcc
     5881 ggtcgcgtga gcgatatggt gttcctcgat gactccaatc cgttaaccgg ttttatgcta
     5941 atcgacaccg ccatctgggg tgaagacggc aactttatcg atgccgtcgc ccatatgatc
     6001 ttgcctgcca ttgtgctggg tactattccg ctggcggtca ttgtgcgtat gacacgctcc
     6061 tcgatgctgg aagtgctggg cgaggattac atccgcaccg cgcgcgccaa agggctaacc
     6121 cgcatgcggg tgattatcgt ccatgcgctg cgtaacgcga tgctgccggt ggtgaccgtt
     6181 atcggcctgc aggtgggaac attgctggcg ggggcgattc tgaccgaaac catcttctcg
     6241 tggcccggtc tgggacgctg gttgattgac gcactgcaac gccgcgacta tccggtagtg
     6301 cagggcggcg tattgctggt ggcgacgatg attatcctcg tcaacttgct ggtcgatctg
     6361 ctgtacggcg tggtgaaccc gcgtattcgt cataagaagt aaggggacat catgtcacag
     6421 gttactgaaa ataaagtgat tagcgcaccg gtgccgatga ccccgttaca ggagttctgg
     6481 cactatttta aacgcaacaa aggcgcggtc gtcgggctgg tttacgtcgt catcgtgctg
     6541 ttcatcgcga tctttgccaa ctggattgca ccctataacc cggcggaaca gttccgcgat
     6601 gcactgctcg ccccgccagc ctggcaggaa ggcggcagca tggcgcactt gctgggcacc
     6661 gatgacgtag gccgtgatat gctgtcgcgc ctgatgtacg gtgcgcgcct gtcgctgctg
     6721 gttggctgtc tggtagttgt gttatcgctg attatgggcg ttattctcgg cctgatcgcc
     6781 ggttactttg gcggcctagt cgataacatc attatgcgcg tggtcgatat catgctggcg
     6841 ctgccaagtc tgctgctggc gctggtgctg gtggcaattt tcggcccgtc gattggtaac
     6901 gccgcgctgg cactgacctt cgttgccttg ccgcactatg tgcgcttaac ccgcgccgcc
     6961 gtgctggtgg aagttaaccg cgattacgtc accgcgtctc gcgtggcggg tgccggggcg
     7021 atgcgtcaga tgtttattaa catcttcccg aactgccttg cgccgctgat tgttcaggcg
     7081 tcgctcggtt tctctaacgc cattctcgat atagctgctc ttggtttcct cggcatgggg
     7141 gcacagccgc caacgccgga gtggggcacc atgctctccg acgtgttgca gttcgcgcaa
     7201 agcgcctggt gggtcgtgac cttcccgggt ctggcgatcc tgctgacggt gctggcattt
     7261 aacctgatgg gtgacggtct gcgtgacgcg ctcgatccca aactgaagca gtaagaggtt
     7321 cgagatggcg ttattaaatg tagataaatt atcggtgcat ttcggcgacg aaagcgcacc
     7381 gttccgcgcc gtagaccgca tcagctacag cgtaaaacag ggcgaagtgg ttgggattgt
     7441 gggtgagtcc ggctccggta agtcggtcag ttccctggcg attatggggc tgattgatta
     7501 tccgggccgc gtaatggcgg aaaaactggt gtttaacggt caggatttgc agcgtatatc
     7561 agaaaaagag cgccgcaacc tggtgggtgc cgaagtggcg atgatcttcc aggacccgat
     7621 gaccagcctt aacccgtgct acaccgtggg tttccagatc atggaagcga ttaaggtgca
     7681 tcagggcggc aacaaaagta cccgccgtca gcgggcgatt gacctgctga atcaggtcgg
     7741 tattcccgat ccggcttcgc gtctggatgt ttacccgcat cagctttccg gcggcatgag
     7801 ccagcgcgtg atgatcgcca tggcgattgc ctgtcgacca aaactgctga ttgccgatga
     7861 gccgaccacc gcgctggacg tgaccattca ggcgcaaatc atcgaactac tgctggagct
     7921 acagcagaaa gagaacatgg cgctggtgtt gattacccat gacctggcgc tggtggcgga
     7981 agctgcgcat aaaatcattg tgatgtatgc aggccaggtg gtggaaacgg gcgatgcgca
     8041 cgccatcttc catgcgccgc gtcacccgta tactcaggca ttgctgcgtg cgctgccaga
     8101 atttgctcag gacaaagaac gtctggcgtc gttgccaggt gtcgttcccg gcaagtacga
     8161 ccgcccgaac ggctgcctgc ttaacccgcg ctgcccctat gccactgaca gatgtcgcgc
     8221 tgaagaaccg gcgctgaata tgctcgctga cgggcgtcag tccaaatgcc attacccact
     8281 tgatgatgcc gggaggccga cactatgagt acgcaagagg ccaccctgca acaaccgctg
     8341 ttgcaggcta tcgacctgaa aaaacattat ccggtgaaga aaggcatgtt cgcgccggaa
     8401 cgtctggtta aagcgctgga tggcgtttcg tttaaccttg aacgtggcaa aacgctggca
     8461 gtagtgggcg aatctggctg cggtaaatcg accctcggtc ggttgctgac gatgattgaa
     8521 acgcccaccg gtggcgagct gtattaccag gggcaggatc tgcttaagca cgatccgcag
     8581 gcgcagaagc tgcgtcggca gaaaatccag atcgtcttcc agaaccctta cggttcgctg
     8641 aatccgcgta aaaaagtcgg gcaaattctt gaagagccgc tgctgatcaa caccagctta
     8701 agcaaagaac agcgtcggga aaaagccctg tcgatgatgg cgaaagtcgg cctgaaaacc
     8761 gagcactatg accgctatcc gcatatgttc tccggcggtc agcgtcagcg tatcgccatc
     8821 gcccgtggtc tgatgctcga cccggatgtg gtgattgccg atgaaccggt ttccgcgctg
     8881 gatgtttcag tgcgcgcgca ggtgctgaat ctgatgatgg atttgcagca ggagttgggg
     8941 ctgtcttatg tctttatctc ccacgacctg tcggtggtgg agcacattgc tgatgaagtg
     9001 atggtgatgt acctgggccg ctgcgtggag aagggaacga aagaccaaat cttcaataac
     9061 ccgcgccatc cgtacactca ggcgctactt tccgcgacgc cgcgcctgaa cccggacgat
     9121 cgccgcgagc gcatcaagct cagcggtgaa ctaccaagcc cactgaatcc accgccgggt
     9181 tgcgccttca acgcccgctg tcgtcggcgc ttcggcccct gcacccagtt gcagccgcag
     9241 ctaaaagact acggcggtca actggtagct tgttttgctg ttgatcagga tgaaaatccg
     9301 cagcgttaac tcacaaaacc ggggccatgc gctccggttt actcaatcag cttcaacagt
     9361 ggcgacaagc atagcaaaat gccgtaaagc agaattagcc aggctttaaa tccgcgaagt
     9421 ttttccagtt gtgcgacttt atagatcagg aaaaacggaa tgaggcacga cacaatgcca
     9481 tataacgggc ttcccaactg aaagaacacc agcaccgata cacgaaacga aacccaaatc
     9541 gtcaacgtaa tgacgataaa agcgcagatc gccagagtca gcatgcgtga gttaattttc
     9601 ttggtatcaa taattcggct taacagattg agaataatgc ctttaatagc ctcgtggaaa
     9661 ccgagataaa tgccaaagaa tgcggtcagt acggcaaaga tattcagcac cgtagaggtg
     9721 atatgaatga tatgtccagg gatcacctgc gcggccagtg ccagtgccga gatattttgt
     9781 tcaaaggcag aaacggcttc ttcgtggcta attgagaagg taaacgaaaa ggcaaaaaac
     9841 aggatcaccg cgatgagcgt gatataacta attcggtggg tacgcagcgc gagccgggtt
     9901 gccagtactt tatctgcttc ccgtttacga taggcaatat tcattgggtt aagtacctga
     9961 ataaataccg cagaaaagaa gcaaaatgga attgtaagca ggacatcgcg gaaaaagacg
    10021 gaggcttgcg ggaaggcggt tatattggcg aaattccagt gcgggatcat cgcaaaaccg
    10081 aacacgacaa taatccctac tttgaccacc accattggcc cggaaatctt aaacagtaat
    10141 cgttcaccac cagacgcaat cgctaccagt acggcgaaaa tagcgacttt ataaagtaga
    10201 gattgtgaaa gatcggcatc ggttaaaccg aaggttttca ggtacgaggc gctgtcgaaa
    10261 accacggaga gagagtagat aaaaatcccg tggataatca tcaaaaagta gataaccccg
    10321 aggaaaattc cccagttctt ccccaggtaa tgactgataa tatcggtgta gtcattacag
    10381 gaatcgcttt cagaaagggt ttttaaataa atgtcctgca ctacccaggt ggcaggataa
    10441 gcaatgatcg ctgcggtaat aaatacccaa attcccttca agccaatttg tactggcatc
    10501 agcacggttc cggcaccaat cgccatgcct atgcataata aaacccagcc gaagtcgtag
    10561 cgtgtaaacg gcaatttctg attgtgtttc gatagtgtgt tgtgctgcat aaagtcctgt
    10621 ccagaaagaa gtcggcctcg caaaaatgaa taaacccagt ttctcttgcg caacaggtgg
    10681 agaagtcgaa tacgcagtat gtaaaaaatg aggcaacaga ttcactgggg aggtcgcgag
    10741 gaggcgcaat tctacaaaat tgcgcatttc actaccagtc tggagtcagc ccggatatga
    10801 actgcaacta ttgcaaataa agaaattaag ctggaaggca tcgcgcaatg aggaagattg
    10861 ccgggtgctg acagtaaaaa gcaatcgtaa aatcagcggc aagccgaaag ggttccggtg
    10921 aggcgcaatg ttgcgggggc tttatccctg gtggcattgg ttgctggaga gagaaaaccc
    10981 ccgcacgttg caggtatgca cctgacaaca tcacgggggc taatcttgaa cccaaacaac
    11041 tcaagaatag ccgcgaaacg ttggcattac aacacaggcg gctatatgac gctcgcagaa
    11101 ctgggcatgg ccttctggca tgatttagcg gctccggtca ttgctggcat tcttgccagt
    11161 atgatcgtga actggctgaa taagcggaag taacgtgtca tgcgggcgtc aggctgccgt
    11221 aatggcaatt tgcgcccgga tcaggccgca gaggttaaac tctgcggcct ttttcgtgct
    11281 tactgcgggt aaggcaccca gtcgccgccg ttcaggcgaa cgtacggttt atcctggtat
    11341 tgaataacta ctgcatttga gttctcggag accggtgctg tttgtggcaa cccactggtg
    11401 agttttttcc agtcaacatt gtcttcggtg aaaatcttgc catcaagaac gcgaaccacc
    11461 agatcggaga tagccaggaa gctgctcggt tggtcgatga caatcggtgc cccctgatgt
    11521 ggtgccttca tgccgaagaa tttcacccca acggggacgt ctgtgataga cgggctaggg
    11581 atatcacgta ggccagatac ctgcattctg tcgcccttca gcgcgccgcc gtgttccggc
    11641 accacgacca ccatcacttt acgacccgat ttctccagtt cagtaaagaa ggcgtccagt
    11701 tcatcaaaga atttctgcgc ccgcgctttg taatccgctg ttttgctgac ccccggataa
    11761 tggttgccgt catgcagtgg aagcgtgttg tagaacgtgg cactacggct gtttttatct
    11821 ttttcggtaa cgtccagcca gcggttaagc acggtggtat cgtcataaac cggcgaacca
    11881 tcaaagccca gcaaaataac cggcagattt gtttgatcca tcaattcagt ctgcatgccg
    11941 ccattttcgc gaacttcttt caaaaaaccg ccgaactggc cgttatgtcc catcatcagg
    12001 tgctgggtaa agcccagttt cgaaaggtta tcaaacagat agcagtcgtt atttgccggt
    12061 tgatacagat tagtgtgcga agtctgcccg cagctggcgc gcagtaaacg gatcgccgcc
    12121 gggccactgt aggaggtggc ggagttaaag ttcttgaact caatatcgaa atgcgaccac
    12181 agtggatgcg acatcaaccc ggcggcttct atatccgacc aggaaagcga acagatgtta
    12241 atcaccagta gttcaaatgg ctgagcatca gcgggcagcg aagacgggaa ggtcgattta
    12301 cgtttcgcct ccgcgttata gaaattattc agccaggcgt taaggttcgc cgttgttggc
    12361 ggtgtagttt gtgcgggcat atcacccact accggtgcgc cacccgtcgt ctcaacggtt
    12421 gccgctgcgt taccacccgt cgttgttaca gtggtcgtcg gttgtccggc tggccacaag
    12481 gagaaacttg gtcccgccag ggtaagtacg ttcagccata gcagtatggc aaccacaaaa
    12541 acggtaatgc gaatccattg tgacaggaat aaccaggcca ctaataaaac aaaaatggcc
    12601 ccaatcatct gccagttaat aaagcgtgtg acaaggtcga ttaaataatc ggtactgaac
    12661 cccgccacct gcgaaccctg gctcattatg ctttccgggc caggcaacca ggtgtcatgc
    12721 cagaacaaag caaagccgat cggcagggca atccagtggc gcaagcgatg caggctgtag
    12781 cgcggaatgg gcatcagcag aaacgcggca aacaccaaat tgaggagcgg atggaagtta
    12841 agatatcccg cccacaacag gccgaactta accagaaaat agaagttcca gccggaaagg
    12901 ccgcgccagt attgccagag ggaagaaggc atggcggtat tttgcgtaaa ttgagtcatt
    12961 ttttggttgc cctggctttt tccgtgcggc gtaatgtccc ggccggttta acataacgag
    13021 gtttagcaaa gaacaaacgt aaggtgtcgc gaatgcgtcg caaagagtgc cgcgccagat
    13081 agcccagcgg gaaaaatatc agtgcgcaaa cgacaataat ttcaatgata tcgctgatgg
    13141 tcatcatgat gagcgctcca cagcatcatc taacagtcgc atgggttctg gtattcgtcg
    13201 ccagtggcga ccatcgtgct cggcattgat gaccggttta gaactttgcg ttaaaggcag
    13261 cggcatgccc cattgttctg gggcaagcag gcgcatctgc accagctcgg cactgatttg
    13321 atcatcttca aaccagacca tacggtttga gaaaatgtcg ccagtaggca atgggaaaat
    13381 atgattcaac gcggtatcca gatcgttaat ccgacagaat gagagaaaca gcaccagccg
    13441 attaccgcca atggtcatga tatcgccggt acggttaggg cgacacagcg tcagggcttg
    13501 ttcaacgcgg atacccggta ccggacgtag ggcaaccaga acgcctttac cgtgggcagg
    13561 taatagaggg ttattcatca tgttgttgac ggcattacag aacacatccc acttctggaa
    13621 accacgcagt ttgagcggct gggtcattga cagcaaggta gtgatatctt ccggcacata
    13681 gcgactaaac ttctgccctt gcacgctttc gatcatcgtc agacaacggg agagtggcgc
    13741 attccacgga ataaccatat ttgcaccgca ggccaataac aaacgttcat cggtggcgcg
    13801 caggctagcg gtattttccc gcacgaggat tttcatcgca ctaccgcgct ggcgacgcag
    13861 ggtatgaatg ctgcgggcca gtggctcgat ttgcgcattt tgctgtaaag aaaagaccac
    13921 cgtcgccgcc tgagcggtac gggcttcatt gaacaggact tcgttattgt tgaacagttg
    13981 ccagtgttcc gatagcggcg gcgcaccttc cagtacagca acattactca gaatgcgttt
    14041 ttcgtcgctg cgtggttgga tctccgcctc ttcgctttga actaatgtcc agataccatt
    14101 ttgttgctga acgctaagct gctgacgggc gctgacccct ttttcgttgc accagaaggc
    14161 aatatccagc aaatgttggt caccctgaaa acgcaaactg gcaagaccaa aaagtgaacg
    14221 gtattcctca agcaacaatg aaaattgttt atcgttatta tttccgggat taattaccaa
    14281 aagcgaacaa tgggttaacc tgctccattt attcatttta tccaaccatg agcgaagccg
    14341 ctcggcagga atgttttgcc atgcgttatt tgcgcaaaca agaataaaaa ggtaattatg
    14401 gggatcaata gaacactgca aatcacgggt caaatagtat agaccttttt catgatttag
    14461 cattgaaaat aattttattt tttccggccc ttgataatca tctaattgaa agattttcgc
    14521 cggatcgctg tccatgctaa tgaccgcgac gtgtgcggtt tcagcctggg atgcaattgt
    14581 ttgattcgcc agactgatag catcttcatg gcgatcgacg ttaaaccacc agacgccgcc
    14641 tgctggcata tgtcgcagct catcccataa tgatgagata ccgatagaga atacagggcc
    14701 cacaatgtcc ctcatgtcac cattttgtct gattatcagt ttactagcga aagctaagaa
    14761 ataaacctac cattgaaatt aaaacttatc agatttagca tgtgaatcaa tttagaaggt
    14821 cacaagacgt gtgattttag tcttttcgtt tttaactttt tctgttgcgt aacggaaagt
    14881 caaaaagtga gcaaattccc gtctcgccgt aaacaataaa ccggcgaaat gctcacggtt
    14941 agaattgtct catgaacggt acggttattt catagggatc aagcaaaatg aataacaatg
    15001 aaccagatac tctgcctgat cccgcgatag gctatatctt ccagaatgat attgtggcgt
    15061 taaagcaggc attttcactg cctgatattg attatgccga tatttcccaa cgcgaacagt
    15121 tggccgcggc attaaaacgc tggccgttgc tggcagagtt tgcgcaacaa aagtagggga
    15181 ttggtgaatg gccgtactgg gattgcaggg ggtgcgggga ggcgtgggga caacaaccat
    15241 caccgccgca ttagcctggt cattacaaat gttgggagaa aatgtcctgg tggtcgatgc
    15301 ctgcccggac aacttgttgc gcctgtcatt taatgttgat tttacccacc gtcagggctg
    15361 ggccagagcg atgctggatg gccaggactg gcgtgacgct gggttgcgct acacctcgca
    15421 gctcgatttg ctgccttttg gtcagttatc cattgaagaa caagaaaatc cacagcacag
    15481 gcaaacccgg ctgagcgata tttgctccgg cttacagcaa ctaaaagcca gcgggcgtta
    15541 ccagtggatt ttaatcgact taccgcgtga tgcctcgcag ataacccacc agctgctgag
    15601 tttgtgcgat cactcgctgg caatcgtcaa tgtggatgcc aactgccata tccgactgca
    15661 tcagcaagcg ctgccggatg gcgcacatat tttgattaat gacttccgta ttggcagtca
    15721 ggttcaggac gatatttacc agctttggtt gcaaagccag cgccgattac tgccgatgct
    15781 cattcatcgt gatgaagcga tagctgaatg cctggcggct aagcaaccag taggtgaata
    15841 tcgcagtgat gcgctggcgg ctgaagagat actgacgctg gcgaactggt gcctgttgaa
    15901 ctactccggg ctgaaaacgc cagtcgggag tgcatcatga gtatcctgac ccggtggttg
    15961 cttatcccgc cggtcaacgc gcggcttatc gggcgttatc gcgattatcg tcgtcacggt
    16021 gcgtcggctt tcagcgcgac gctcggctgt ttctggatga tcctggcctg gatttttatt
    16081 ccgctggagc acccgcgctg gcagcgtatt cgcgcagaac ataaaaacct gtatccgcat
    16141 atcaacgcct cgcgtccgct ggacccggtc cgttatctca ttcaaacatg ctggttactg
    16201 atcggtacat cgcgcaaaga aacgccgaaa ccgcgcaggc gggcattttc aggtctgcag
    16261 aatattcgtg gacgttacca tcaatggatg aacgagctgc ctgagcgcgt tagccataaa
    16321 acacagcatc ttgatgagaa aaaagagctc ggtcatttga gtgccggggc gcggcggttg
    16381 atcctcggta tcatcgtcac cttctcgctg attctggcgt taatctgcgt tactcaaccg
    16441 tttaacccgc tggcgcagtt tatcttcctg atgctgctgt ggggtgtagc gctgatcgta
    16501 cggcggatgc cggggcgctt ctcggcgcta atgttgattg tgctgtcgct gaccgtttct
    16561 tgccgttata tctggtggcg ttacacctct acgctgaact gggacgatcc ggtcagcctg
    16621 gtgtgcgggc ttattctgct cttcgctgaa acgtacgcgt ggattgtgct ggtgctcggc
    16681 tacttccagg tcgtatggcc gctgaatcgt cagccggtgc cattgccgaa agatatgtcg
    16741 ctgtggccgt cggtggatat ctttgtcccg acttacaacg aagatctcaa cgtggtgaaa
    16801 aataccattt acgcctcgct gggtatcgac tggccgaaag acaaactgaa catctggatc
    16861 ctcgatgacg gcggcaggga agagtttcgc cagtttgcgc aaaacgtggg ggtgaaatat
    16921 atcgcccgca ccactcatga acatgcgaaa gcgggcaaca tcaacaatgc gctgaaatat
    16981 gccaaaggcg agttcgtatc gattttcgac tgcgaccacg taccaacgcg atcgttcctg
    17041 caaatgacca tgggctggtt cctgaaagag aaacagctgg cgatgatgca gacgccgcac
    17101 cacttcttct cgccggaccc gtttgaacgc aacctggggc gttttcgtaa aacgccgaac
    17161 gaaggcacgc tgttctatgg tctggtgcag gatggcaacg atatgtggga cgccactttc
    17221 ttctgcggtt cctgtgcagt aattcgtcgc aaaccattgg atgaaattgg cggtattgct
    17281 gtcgaaacgg taaccgaaga tgcgcacacg tctctgcgcc tgcaccgtcg tggctacacc
    17341 tctgcatata tgcgtattcc gcaggcggcg gggctggcga ccgaaagtct gtcggcgcat
    17401 atcggtcagc gtattcgctg ggcacgcggg atggtgcaaa tcttccgtct cgataacccg
    17461 cttaccggta aagggctgaa attcgcccag cggctgtgct acgtcaacgc catgttccac
    17521 ttcttgtcgg gcattccacg actgatcttc ctgactgcgc cgctggcgtt cctgctgctt
    17581 catgcctaca tcatctatgc gccagcgttg atgatcgccc tgttcgtgct gccgcatatg
    17641 atccatgcca gcctgaccaa ctcgaagatc cagggcaaat atcgccactc tttctggagt
    17701 gaaatctacg aaacggtgct ggcgtggtat atcgcaccac cgacgctggt ggcgctgatt
    17761 aacccgcaca aaggcaaatt taacgtcacc gccaaaggtg gactggtgga agaagagtac
    17821 gtcgactggg tgatctcgcg gccctacatc ttccttgttc tgctcaacct ggtgggtgtt
    17881 gcggtcggca tctggcgcta cttctatggc ccgccaaccg agatgctcac cgtggtcgtc
    17941 agtatggtgt gggtgttcta caacctgatt gttcttggcg gcgcagttgc ggtatcggta
    18001 gaaagcaaac aggtacgccg atcgcaccgc gtggagatga cgatgcccgc ggcaattgcc
    18061 cgcgaagatg gtcacctctt ttcgtgtacc gttcaggatt tctccgacgg tggtttgggg
    18121 atcaagatca acggtcaggc gcagattctg gaagggcaga aagtgaatct gttgcttaaa
    18181 cgcggtcagc aggaatacgt cttcccgacc caggtggcgc gcgtgatggg taatgaagtt
    18241 gggctgaaat taatgccgct caccacccag caacatatcg attttgtgca gtgtacgttt
    18301 gcccgtgcgg atacatgggc gctctggcag gacagctacc cggaagataa gccgctggaa
    18361 agtctgctgg atattctgaa gctcggcttc cgtggctacc gccatctggc ggagtttgcg
    18421 ccttcttcgg tgaagggcat attccgtgtg ctgacttctc tggtttcctg ggttgtatcg
    18481 tttattctgc gccgcccgga gcggagcgaa acggcacaac catcggatca ggctttggct
    18541 caacaatgat gataacgcga tgaaaagaaa actattctgg atttgtgcag tggctatggg
    18601 gatgagtgcg ttcccctctt tcatgacgca ggcgacgcca gcaacgcaac cactgatcaa
    18661 tgctgagcca gctgtagccg cccagacgga acaaaatccg caggtggggc aagtgatgcc
    18721 gggcgtgcag ggcgctgatg cgccagtcgt ggcgcagaac ggtccttcgc gtgatgtgaa
    18781 gctgaccttt gcgcaaattg cgcctccgcc gggcagcatg gtgctacgtg gcattaaccc
    18841 gaacggcagc attgagtttg gtatgcgcag cgatgaagtg gtgacgaagg cgatgctcaa
    18901 cctcgaatac atgccatcgc catcgttact gcctgtccag tcgcagttaa aggtttatct
    18961 caatgatgag ctgatgggcg tactgccagt gaccaaagaa cagttgggta aaaaaacgct
    19021 ggcgcaaatg cccattaacc cactgtttat taccgacttc aaccgtgtgc ggctggagtt
    19081 tgtcggccat tatcaggacg tgtgcgaaaa cccggccagc accacgcttt ggctggatgt
    19141 tgggcggagc agtggactgg atctgaccta tcagaccctg aatgtgaaga atgacctgtc
    19201 acacttcccg gtgccattct ttgacccgcg cgataaccgt actaacacct tgccgatggt
    19261 ctttgcgggt gcgccggatg ttgggctgca acaagcatct gccattgtcg cctcgtggtt
    19321 tggttcgcgt tctggctggc gtgggcagaa cttcccggtg ctctataacc aactgccgga
    19381 tcgtaatgcc attgtctttg caaccaacga caaacggccg gacttcctgc gcgatcatcc
    19441 ggcggtaaaa gccccggtga ttgagatgat caaccatccg cagaatcctt acgtcaaact
    19501 gctggtggtg tttggtcgtg acgacaaaga cctgttgcag gcagcgaaag gtatcgctca
    19561 gggtaacatt ctgttccgtg gtgaaagcgt ggtagtgaat gaagtgaaac cgctgctacc
    19621 gcgtaagccg tacgatgcgc cgaactgggt acgtaccgat cgtccggtca catttggcga
    19681 actgaaaacc tatgaagaac agttacaatc cagcggtctt gagccagcag cgattaacgt
    19741 ttcgctaaac ctgccgccgg atctctacct gatgcgcagt accggcattg atatggatat
    19801 taattaccgc tacaccatgc cgccggtgaa agacagttcg cggatggata tcagcctgaa
    19861 taaccagttc ctgcaatcct tcaacctgag cagcaaacag gaggcgaacc gcctgctgct
    19921 gcggattccg gtattacaag gtttgctgga tggcaaaaca gatgtctcta ttccggcgct
    19981 gaaactgggc gcgaccaacc agctgcgctt cgactttgag tatatgaacc cgatgccggg
    20041 cggttcggtg gataactgta ttaccttcca gccggtgcag aatcatgtgg tgattggtga
    20101 cgactccacc atcgacttct cgaagtatta ccacttcatc ccgatgccgg atctacgcgc
    20161 ctttgctaac gcgggcttcc cattcagccg gatggcggat ctgtcgcaaa ccatcaccgt
    20221 gatgccgaaa gcgcctaacg aagcacagat ggaaacgttg ctgaatactg ttggttttat
    20281 cggcgcacag acgggcttcc cggcgattaa tctgacggtg accgatgatg gcagcaccat
    20341 tcagggcaaa gatgccgaca tcatgatcat cggtggtatc ccggacaaac tgaaagacga
    20401 taagcagatc gacctattgg tgcaggcgac cgaaagctgg gtgaaaacac cgatgcgcca
    20461 gaccccgttc cccggcattg tgccggacga gagcgatcgc gcggcagaaa cccggtcaac
    20521 gctgacctct tccggtgcga tggcggcggt gattggcttc cagtcgccgt ataacgacca
    20581 gcgcagcgtg attgcgctgt tggcagatag cccacgcggt tatgaaatgc ttaacgatgc
    20641 ggtgaacgat agcggcaaac gcgccaccat gttcggttcg gtcgcggtga tccgcgagtc
    20701 cggtatcaac agcctacgtg ttggcgacgt ttattacgta ggtcatctgc cgtggttcga
    20761 gcgcgtgtgg tatgcgctgg caaaccatcc gattctgctg gcggtgctgg cggctatcag
    20821 tgtgatattg ctggcatggg tactgtggcg tctgctgcga attattagtc gtcgtcgtct
    20881 taacccggat aacgagtaat tgaagatgaa tgtgttgcgt agtggaatcg tgacgatgct
    20941 gttgttggct gcctttagtg ttcaggcagc ctgtacctgg cctgcctggg agcagtttaa
    21001 aaaggattac atcagtcagg aagggcgcgt catcgacccc agcgacgcgc gcaaaatcac
    21061 cacctccgaa gggcaaagtt acggtatgtt ctttgccctg gcggctaacg accgtgcagc
    21121 tttcgataat attctcgact ggacgcagaa caatctcgct cagggttctt taaaagaacg
    21181 tttgcccgcc tggctgtggg gcaagaaaga gaacagtaag tgggaagtgc tggacagcaa
    21241 ttcggcctcc gatggtgatg tctggatggc ctggtcgttg ctggaggcgg ggcgtttgtg
    21301 gaaagagcag cgttataccg acatcggcag cgcgttgcta aaacgtatcg cgcgggagga
    21361 agtggtgacg gtgcctgggc tgggttccat gttgttaccg ggcaaagtgg gttttgctga
    21421 ggataacagc tggcgtttta accccagcta cctgccgccg acgctggcgc agtatttcac
    21481 ccgctttggc gcgccgtgga ctacgctgcg cgaaaccaat caacgtttat tgctggaaac
    21541 cgccccgaaa ggcttttcgc cagactgggt gcgttatgag aaagacaaag gctggcagct
    21601 aaaagccgaa aaaacattga tcagcagcta cgacgccatc cgcgtttaca tgtgggtagg
    21661 catgatgcct gacagcgatc cgcagaaagc gcggatgctc aaccggttta aaccgatggc
    21721 gacattcact gagaaaaacg gttatccgcc ggaaaaagtg gatgtggcta cggggaaagc
    21781 gcagggtaaa ggaccagttg gtttttctgc cgccatgctg ccctttttac aaaaccgcga
    21841 tgcgcaggcc gttcagcgtc agcgcgtggc cgataacttt cccggcagcg atgcctatta
    21901 caactatgtg ctgaccctgt ttggacaagg ctgggatcaa caccgtttcc gcttctcgac
    21961 aaaaggtgag ttattacctg actggggcca ggaatgcgca aattcacact aaacatattc
    22021 acgctttccc tcggtctggc cgtcatgccg atggtcgagg cagcaccaac cgctcagcaa
    22081 cagttgctgg agcaagttcg gttaggcgaa gcgacccatc gtgaagatct ggtgcaacag
    22141 tcgttatatc ggctggaact tattgatccg aataacccgg acgtcgttgc cgcccgtttc
    22201 cgttctttgt tacgttaggg cgatattgat ggcgcgcaaa aacagctcga tcggctgtcg
    22261 cagttagcgc cgagttcaaa tgcgtataaa tcgtcgcgga ctacgatgct actttccacg
    22321 ccggatggtc gtcaggcact gcaacaggca cgattgcagg cgacgaccgg tcatgcagaa
    22381 gaagctgtgg cgagttacaa caaactgttc aacggtgcgc cgccggaagg tgacattgct
    22441 gtcgagtact ggagtacggt ggcgaaaatt ccggctcgcc gtggcgaagc gattaatcag
    22501 ttaaaacgca tcaatgcgga tgcaccgggc aatacgggcc tgcaaaacaa tctggcgcta
    22561 ttgctgttta gtagcgatcg ccgtgacgaa ggttttgccg tcctggaaca gatggcaaaa
    22621 tcgaacgccg ggcgcgaagg ggcctctaaa atctggtacg ggcagattaa agacatgccc
    22681 gtcagtgatg ccagtgtgtc ggcgctgaaa aaatatctct cgatctttag tgatggcgat
    22741 agcgtggcgg ctgcgcaatc gcaactggca gaacagcaaa aacagctggc cgatcctgct
    22801 ttccgcgctc gtgcgcaagg tttagcggcg gtggactctg gtatggcggg taaagccatt
    22861 cccgaactac aacaggcggt gcgggcgaac ccgaaagaca gtgaagctct gggggcgctg
    22921 ggccaggcgt attctcagaa aggcgatcgc gccaatgcag tggcgaatct ggaaaaagcc
    22981 ctcgcactgg acccgcacag cagcaacaac gacaaatgga acagtctgct gaaagtaaac
    23041 cgctactggc tggcgatcca gcagggcgat gctgcgctga aagccaataa tcctgaccgg
    23101 gcagaacgcc tgttccagca ggcgcgtaat gtcgataaca ccgacagtta tgcagtgctg
    23161 gggctgggcg atgtggcgat ggcgcgaaaa gattatcccg ccgccgaacg ttattatcag
    23221 cagaccttgc gtatggacag cggcaacact aacgccgtgc gcgggctggc aaatatttac
    23281 cgccagcaat cgccagaaaa agctgaagcg tttatcgcct cgctctctgc cagtcagcgg
    23341 cgtagcattg atgatatcga acgtagcctg caaaacgacc gtctggcaca gcaggcagag
    23401 gcactggaaa accagggcaa atgggcgccg gcggcagcac ttcagcggca acgactggcg
    23461 ctggaccccg gcagcgtatg gattacttac cgactttcgc aggatctctg gcaggccgga
    23521 caacgcagcc aggccgatac gttaatgcgc aatctggcgc agcagaagtc gaacgacccg
    23581 gagcaggttt acgcttacgg gctgtacctc tctggtcatg accaggacag agcggcgctg
    23641 gcgcatatca acagcctgcc gcgcgcgcag tggaacagca atattcagga gctggttaat
    23701 cgactgcaaa gcgatcaggt gctggaaacc gctaatcgcc tgcgagaaag cggcaaagaa
    23761 gctgaagcgg aagcgatgct gcgtcagcaa ccaccttcca cgcgtattga cctcacgctg
    23821 gctgactggg cgcagcagcg acgtgattac accgccgccc gcgctgcata tcagaatgtc
    23881 ctgacgctgg agccaactaa cgccgatgcc attctggggc tgacggaagt ggatattgct
    23941 gccggtgaca cagcggcggc acgtagccag ctggcgaaac tgcccgctac cgataacgcc
    24001 tcgctgaaca cacagcggcg cgtggcgctg gcgcaggcgc agcttggaga taccgcagcg
    24061 gcgcagcaga cgtttaataa gttgatcccg caggcaaaat ctcagccacc gtcgatggaa
    24121 agcgcgatgg tgctgcgcga cggtgcgaag tttgaagcgc aggcgggcga tccaaagcag
    24181 gcgctggaaa cctacaaaga cgccatggtc gcatccggtg tgactacgac gcgtccgcag
    24241 gataacgaca cattcacccg actgacccgt aacgacgaga aagatgactg gctgaaacgc
    24301 ggcgtgcgca gcgatgcggc gggcctctat cgccagcagg atcttaacgt caccctcgag
    24361 cacgattact ggggttcgag cggcaccggt ggttactccg atctgaaagc gcacactacc
    24421 atgttgcagg tggatgcgcc gtattctgac gggcggatgt tctttcgcag tgatttcgtc
    24481 aatatgaacg tcggcagttt ctccactaat gccgatggca aatgggatga caactggggc
    24541 acctgtacat tacaggactg tagtggcaac cgcagccagt cggactccgg tgccagcgtg
    24601 gaggtcggct ggcgaaatga cgtctggagc tgggatatcg gtaccacgcc gatgggcttc
    24661 aacgtggtgg atgtggtcgg cggcatcagt tacagcgatg atatcgggcc gctgggttac
    24721 accgttaacg cccaccgtcg gcccatctcc agttctttgc tggcctttgg tgggcaaaaa
    24781 gactccccga gcaataccgg gaaaaaatgg ggtggcgtac gtgccgacgg tgtggggcta
    24841 agtctgagct acgataaagg tgaagcaaac ggcgtctggg catcgcttag tggcgaccag
    24901 ttaaccggta aaaatgtcga agataactgg cgcgtgcgct ggatgacggg ctattactat
    24961 aaggtcatta accagaacaa tcgccgcgtc acaatcggcc tgaacaacat gatctggcat
    25021 tacgacaaag atctgagtgg ctactcactc ggtcagggcg gttactacag tccgcaggaa
    25081 tacctgtcgt ttgctatacc ggtgatgtgg cgggagcgca cggaaaactg gtcgtgggag
    25141 ctgggggcgt ctggctcgtg gtcgcattca cgcaccaaaa ccatgccgcg ttatccgctg
    25201 atgaatctga tcccgaccga ctggcaggaa gaagctgcgc ggcaatccaa cgatggcggc
    25261 agcagtcagg gcttcggcta cacggcgcgg gcattacttg aacgacgtgt tacttccaac
    25321 tggtttgttg gcacggcaat tgatatccag caggcgaaag attacgcacc cagccatttc
    25381 ctgctctacg tacgttattc cgccgccgga tggcagggtg acatggattt accgccgcag
    25441 ccgctgatac cttacgccga ctggtaagtt ttcagatagc gcctctctta atgccgctgc
    25501 gatcgggtat actcgggcgg caatctggga tttccggggg gagacaattt gcgcgtaagt
    25561 cgctcgttaa caatcaagca gatggcaatg gtggcagccg ttgtcctggt gttcgttttt
    25621 attttttgca ccgttttgct gttccatctg gtccagcaga atcgctataa cacggctacg
    25681 caactggaaa gcattgctcg ctctgtacgc gaacccttat cttcagctat tttgaaaggc
    25741 gatattcccg aagcggaagc tattcttgcc agcattaaac cggcaggcgt ggtcagccgt
    25801 gccgatgtag tgctgcctaa ccagttccag gcgctgcgta aaagttttat tccagagcgc
    25861 ccggtgccgg taatggttac tcgcctgttt gagctaccgg ttcaaatctc gctgggcgtt
    25921 tactcgctcg aacgtccggc aaacccgcag ccaattgcct atctggtact acaggcggat
    25981 tccttccgta tgtataagtt cgtgatgagc accctctcaa cgttagtgac catttactta
    26041 cttttgtcgc ttatcctgac cgtcgccatc agctggtgca ttaaccgcct gattttgcat
    26101 ccgttacgca atattgctcg cgaacttaac gccatcccag cccaggagct tgttggtcac
    26161 caactggcat taccgcgtct gcatcaggac gatgaaatcg gtatgttggt gcgcagttac
    26221 aacctcaacc agcaattgct gcagcgccat tatgaagaac agaacgaaaa tgcgatgcgc
    26281 ttcccggtgt cggatttgcc gaacaaagcc ttgctgatgg agatgctgga gcaggttgtc
    26341 gcgcgtaaac aaaccaccgc gctgatgatc atcacctgtg aaaccctgcg tgatactgcg
    26401 ggcgtgctga aagaggcgca acgagaaatt ctgctgctga cgctggtgga aaaactcaaa
    26461 tcggtactgt cgccacgtat gatcctcgcg cagattagcg gttatgactt tgctgtcatt
    26521 gccaacggtg tacaggaacc gtggcacgca atcaccttag gtcagcaagt gctcactatc
    26581 atgagcgagc gcctgccgat tgaacgtatt caactccgtc cgcactgtag cattggcgtg
    26641 gcgatgttct acggcgatct caccgccgaa cagctttaca gtcgcgctat ttctgcggca
    26701 tttaccgctc gccataaagg caagaatcag attcagttct ttgatccgca gcagatggaa
    26761 gccgcccaga agcggttgac ggaagagagc gatatcctta atgcactgga aaatcatcag
    26821 tttgctattt ggttacagcc acaggtcgag atgaccagcg gtaaactggt cagtgcggaa
    26881 gtgttactgc gtatccagca accggatggc agttgggacc tgccggatgg cttaatcgat
    26941 cgcattgagt gctgtgggct gatggttacc gtcggtcact gggtgctgga agagtcctgt
    27001 cgattgcttg cagcctggca agagcgcggc attatgctgc ccttgtcggt aaacctctct
    27061 gcgctgcaac tgatgcaccc aaatatggtg gcggatatgc tggaactgtt aacccgctat
    27121 cgcattcaac cgggaacact gattctggaa gtgacagaaa gccgacgtat tgacgaccct
    27181 catgctgcgg tggcaatcct ccgtccgctg cgcaatgccg gagttcgggt ggcgctggat
    27241 gatttcggca tgggctacgc agggctgcgt cagctgcagc atatgaaatc gttgccaatc
    27301 gacgtactga aaatcgacaa aatgtttgtt gaaggcttgc cggaagatag cagcatgatt
    27361 gctgcaatta tcatgctggc gcagagcctg aacttacaaa tgattgccga aggcgtggag
    27421 actgaagcac aacgcgactg gctggcaaaa gcgggcgttg gtattgccca gggcttcctt
    27481 tttgctcgcc cactccctat tgaaatcttc gaagagagtt acctggaaga aaagtagcta
    27541 ccccaaactg attacaaaac tttaaaaagt gctggtttgt gcgagccagc tcaaactttt
    27601 taaccttttt gtttcaatta tgatccaggt acatttctgt gatgttgtct gggtgttatt
    27661 ttaaggccgc aggtacctca taaccttaca agacctgtag ttttactaaa ggacacccta
    27721 tgaaaacctc tctgtttaaa agcctttact ttcaggtcct gacagcgata gccattggta
    27781 ttctccttgg ccatttctat cctgaaatag gcgagcaaat gaaaccgctt ggcgacggct
    27841 tcgttaagct cattaagatg atcatcgctc ctgtcatctt ttgtaccgtc gtaacgggca
    27901 ttgcgggcat ggaaagcatg aaggcggtcg gtcgtaccgg cgcagtcgca ctgctttact
    27961 ttgaaattgt cagtaccatc gcgctgatta ttggtcttat catcgttaac gtcgtgcagc
    28021 ctggtgccgg aatgaacgtc gatccggcaa cgcttgatgc gaaagcggta gcggtttacg
    28081 ccgatcaggc gaaagaccag ggcattgtcg ccttcattat ggatgtcatc ccggcgagcg
    28141 tcattggcgc atttgccagc ggtaacattc tgcaggtgct gctgtttgcc gtactgtttg
    28201 gttttgcgct ccaccgtctg ggcagcaaag gccaactgat ttttaacgtg atcgaaagtt
    28261 tctcgcaggt catcttcggc atcatcaata tgatcatgcg tctggcacct attggtgcgt
    28321 tcggggcaat ggcgtttacc atcggtaaat acggcgtcgg cacactggtg caactggggc
    28381 agctgattat ctgtttctat attacctgta tcctgtttgt ggtgctggta ttgggttcaa
    28441 tcgctaaagc gactggtttc agtatcttca aatttatccg ctacatccgt gaagaactgc
    28501 tgattgtact ggggacttca tcttccgagt cggcgctgcc gcgtatgctc gacaagatgg
    28561 agaaactcgg ctgccgcaaa tcggtggtgg ggctggtcat cccgacaggc tactcgttta
    28621 accttgatgg cacatcgata tacctgacaa tggcggcggt gtttatcgcc caggccacta
    28681 acagtcagat ggatatcgtc caccaaatca cgctgttaat cgtgttgctg ctttcttcta
    28741 aaggggcggc aggggtaacg ggtagtggct ttatcgtgct ggcggcgacg ctctctgcgg
    28801 tgggccattt gccggtagcg ggtctggcgc tgatcctcgg tatcgaccgc tttatgtcag
    28861 aagctcgtgc gctgactaac ctggtcggta acggcgtagc gaccattgtc gttgctaagt
    28921 gggtgaaaga actggaccac aaaaaactgg acgatgtgct gaataatcgt gcgccggatg
    28981 gcaaaacgca cgaattatcc tcttaatctc accacttatg cccgcactcc cttccccgag
    29041 tgcgggtgtt tgcgcataat tgacccctgt gcctgaactt accacctggg tgagttcagg
    29101 tttatttcac ttcttccgtg acattttcat gttcttgcgg tctaacacga agtgttttta
    29161 acgtcattta gactgactga caacgggcag ttttttatta ccaggatagt tgatcagggg
    29221 ttcacatgca gggcacaaaa attcgacttt tagcgggcgg tttgctgatg atggccactg
    29281 ctggctatgt gcaggcagat gcgctccagc ctgatccagc atggcaacag gggacgcttt
    29341 ccaacggttt acagtggcaa gtgctgacca ccccccagcg tcccagcgat cgtgttgaaa
    29401 ttcgcctgct ggttaatacc ggttcgctcg ccgaaagtac acaacagagc ggttacagtc
    29461 acgccatccc tcgtattgcg ctaacgcaaa gcggtggcct tgacgcagca caggcgcgtt
    29521 cattgtggca gcaggggatc gaccctaaac gcccgatgcc gccggtaatt gtctcttatg
    29581 acaccacgct gtttaatctg agtttgccca ataaccgtaa cgatttgctg aaagaagcgc
    29641 tctcttatct ggcaaatgcc actggcaaat tgaccatcac accagaaacc atcaaccacg
    29701 cgctgcaaag tcaggacatg gtggcaacct ggcctgccga tactaaagag ggctggtggc
    29761 gctatcgtct gaaagggtca accttgttag gtcacgatcc tgccgatccg ctgaaacaac
    29821 ccgttgaagc ggaaaaaatt aaagatttct atcagaaatg gtacaccccg gatgcaatga
    29881 cgctactggt ggtgggaaac gtggatgcgc gctcggttgt cgaccaaatc aacaaaacgt
    29941 ttggcgaact gaaaggcaaa cgtgaaacgc cagctccggt gccgacgctt tctccgctgc
    30001 gtgcggaagc ggtgagtatt atgactgacg cggtgcgtca ggaccggtta tctatcatgt
    30061 gggatacgcc gtggcagccg attcgtgaat cagccgcact gctgcgctac tggcgtgcgg
    30121 acctggcccg cgaggcgctg ttctggcatg ttcagcaagc gttaagcgcc agtaacagca
    30181 aagacatcgg tcttggattt gactgccgtg tgctgtatct gcgtgcgcag tgtgccatca
    30241 acatcgaatc accaaacgac aagctgaaca gcaaccttaa tctggtggcg cgtgaactgg
    30301 cgaaggttcg cgataaaggt ctgccggaag aagagttcaa tgcgttagtg gcgcaaaaga
    30361 aactggagct gcagaaactg tttgccgcct atgcgcgggc tgataccgat attctgatgg
    30421 gtcagcggat gcgttcgttg caaaatcagg tcgtcgatat cgcgccggag cagtatcaga
    30481 aactgcggca ggatttcctt aacagcctga cggtggagat gttaaatcag gatctgcgtc
    30541 agcagttgtc gaatgatatg gcgttaatac tgctgcagcc gaaaggcgag ccggaattta
    30601 acatgaaagc gttgcaggcg gcctgggatc aaatcatggc cccatcgact gctgctgccg
    30661 ccacctctgt cgccacggat gacgtacatc ctgaagtgac ggatattcca cctgcacagt
    30721 aatgcctgat ggtgatgagt tagcacaacc atcaggtatt tatggatgag ctggatagag
    30781 gggtaacact ttatccagcc ttttgcatat gctgcgttta cgctggcatc gcctcacgcg
    30841 ggataatcgc gccgcgatac tgaataacgg tacttgcggt caggtgcccg cgtttcgccg
    30901 cgttttccgc actgccgccc gtcaaacgta ccgccagata accggcgctg aaagagtcgc
    30961 cagctgcggt ggtatcgatc actttttctt tcggcagttt caccgccgga acatccacta
    31021 acccttcgcc agcaatggac accaggcaag aatccgcccc gcgtttcacc accacttctt
    31081 tcacgcccgc gttatgggtg cgcgcaatga cgtcttccac cggctgttga ccccacagcg
    31141 cgtcttcatc gtccagcgtc aggaaggcga tatccgtgca ttccagcatt tgttggtaca
    31201 cctgctgtgt ctcttctttg ctggcccaca ggcgcggacg atagttattg tcgaaaatca
    31261 cttttccgcc gttggcgcgg cattcgcgca gcagggaaag cagcttttcg cggctggtcg
    31321 ggcttaagat cgccaggcta atcccgctca ggtagagata atcgaaattc gccagctctt
    31381 cgcaaatcgc cgtagactgc tcactctcca gccagaattt ggcggcggct tcgttccgcc
    31441 agtagtagaa cgtacgctcg ccggtgctgt cggtttcaat gtagtaaagg cccggcagac
    31501 ggttttccat ccgttgggtc agggaaatat caacgttctc gccgtgccag gcgtccagca
    31561 tctgctggct aaaactgtcc gttcccagcg ccgttacgta atgaacggtt aatgccgcag
    31621 gatcgacctg acgggcgata tagacggaag tgttcagggt atcgccgccg aaaccgcgct
    31681 taacgtccgc gcctttctcg gaaagctcaa tcatgcattc gccaatcacg gcaatctttt
    31741 tggacatagt cgtgaacctg atctgtaaaa aattagcgtt agtttgcgct gtggtggttt
    31801 gctggtcaac aatattaaaa cagtgttcca ttattttttt gagccagaac gtattcctga
    31861 aagattccgt tgtggagtga ggaaatttac cccggccagg cggtaaagtt ctgcccttac
    31921 gcgccgataa tctttgtcga gtccgggcag catcactttt aaacacagga catctttgat
    31981 gataaggcag gttatccagc gaataagcaa ccctgaagca agcatcgaga gcttgcagga
    32041 acggcgtttt tggttgcagt gtgagcgtgc ttacacctgg cagccgatct atcaaacatg
    32101 cgggcggtta atggccgtgg agctattaac ggtggtcacg catcccttga acccttcgca
    32161 acgcctgccg ccggatcgct attttactga aatcaccgtc agccatcgga tggaggttgt
    32221 gaaagagcag attgatttgc tggcgcaaaa agccgacttc tttatagagc acggcctgct
    32281 ggcatcggtc aatattgatg gccctacgct catcgccctg cgtcagcaac caaaaatcct
    32341 gcgccaaatt gagcgtcttc cctggctgcg tttcgaactg gtggagcata tccgtctgcc
    32401 gaaagattca acctttgcct cgatgtgtga atttggcccg ctgtggctgg gtgattttgg
    32461 taccgggatg gcaaatttct ctgcactaag tgaagtgcgt tatgactaca tcaaaatcgc
    32521 gcgagaactg tttgtgatgc tgcgtcagtc gccggaagga cgcacactct tttctcagct
    32581 tttacatcta atgaatcgct attgtcgcgg ggtgattgtt gagggcgtag aaacgccgga
    32641 agagtggcgt gatgtacaga actcgcccgc attcgccgca caaggctggt ttctttcacg
    32701 cccggcaccg atagaaacgc tgaatacggc ggttctggcg ctataagctg cctcattttc
    32761 cgcctggctg gactatcttt aggactggca caggaagaat atgaggaagc gaacgatgag
    32821 caaggcaggc aaaataactg ctgcgatttc aggggctttc ttgttgttga ttgtcgtggc
    32881 gatcattttg attgcaactt ttgactggaa tcgactcaaa ccgaccatca accagaaagt
    32941 ctctgcggag ttgaatcgtc cgttcgctat ccgtggcgat ctgggcgtgg tgtgggagcg
    33001 gcaaaaacaa gaaactggct ggcgcagctg ggtgccgtgg cctcatgtac atgcagaaga
    33061 catcattctt ggcaatccac cggatattcc cgaagtcacg atggtgcatt tgccgcgagt
    33121 agaggcaacg ctggcaccgc tggcgctgct gaccaaaacg gtctggctgc cgtggatcaa
    33181 gctcgaaaag cccgacgcgc gcctgattcg cctctccgaa aagaacaata actggacgtt
    33241 taatctcgcc aacgatgata acaaagacgc gaatgcaaag ccgtcggcat ggtcgtttcg
    33301 gctggataat attcttttcg atcaagggcg gatcgccatt gatgacaaag taagcaaagc
    33361 ggatctggaa atttttgttg atccgttagg caagccgctg ccgttcagcg aagttactgg
    33421 atcgaaaggt aaagcggata aagaaaaggt gggcgattac gtttttggcc tgaaggcgca
    33481 gggacgttat aacggtgaac cgctcacggg tacgggaaaa ataggcggta tgctggcgct
    33541 gcgtggcgaa gggacgccgt ttccggtaca ggctgatttc cgttcaggta atacccgtgt
    33601 tgcttttgat ggcgtcgtga atgacccaat gaagatgggc ggtgtcgatt tacggcttaa
    33661 attttctggc gattcactgg gtgatctcta tgaactgacg ggcgttctgc tgcccgatac
    33721 cccgccgttt gaaacggatg gtcggctggt agcgaaaatc gacactgaaa aatcgtcggt
    33781 ctttgattat cgcggtttta atgggcgaat tggcgatagc gatatccacg gttctctggt
    33841 ctacaccacc ggaaagccgc gaccaaaact ggaaggtgat gtcgagtcgc ggcaattgcg
    33901 gctggcggac ctgggaccgt tgattggcgt tgattcgggg aaaggggcag aaaagtcgaa
    33961 acggtctgaa cagaagaagg gcgaaaaaag cgttcagcct gcgggcaaag tgctgcctta
    34021 tgaccgcttc gaaaccgata aatgggacgt tatggatgcc gatgttcgct tcaaaggccg
    34081 acgtatcgag catggcagta gcctgccgat tagcgatctt tctactcata tcatcctcaa
    34141 aaatgctgac ctgcgcctgc aaccgctgaa atttggcatg gcgggcggca gcattgcggc
    34201 gaatatccat ctggaaggcg ataaaaagcc gatgcagggg cgggcagata ttcaggctcg
    34261 tcgactgaaa ctgaaagaac tgatgcccga tgtggaactg atgcagaaga cgctggggga
    34321 aatgaacggt gacgcggaac tacgcggtag cggtaactcg gtggcggcgc ttttaggcaa
    34381 cagtaacggc aacctgaaac tgttgatgaa tgacgggctg gtgagccgca acctgatgga
    34441 gattgttggg ctgaatgtcg gcaactacat tgtcggtgcg atatttggtg acgatgaggt
    34501 gcgggtgaac tgcgcggcgg cgaatctgaa tattgccaac ggcgtagcgc gcccgcagat
    34561 ttttgctttc gatactgaga acgcgttgat taatgttacc ggcacggcaa gttttgcttc
    34621 ggaacagctg gatttgacta ttgatccgga gagtaaaggg attcggatta tcacactgcg
    34681 ttcgccgctg tatgtgcgtg ggacgtttaa aaatccgcag gctggggtga aagccggacc
    34741 gctgattgcc cgtggtgccg ttgcggcggc actggcaacg ctggtaacac cggcggcggc
    34801 gttattggca ctgatctcac cttccgaagg ggaggctaat cagtgtcgga cgatattgtc
    34861 gcagatgaag aagtgatgag gttggattgt gtttgctggt gagttcggga gcagcgtgtt
    34921 cccctcaccc taatcctctc cccaaagggg cgaggagact gttttgtgcg tgttgaaaca
    34981 acgagtaccg cttttccgtt cactttctgg gggagggctg ttatgttcgc gatataacat
    35041 ctcgctccgc ttttctccct ctccctttca gggagagggc tggggtgagg gtggctgccc
    35101 acacgatact tacaacgact gatgttgcgt ctcatgggtc agcagcaggg cgattaacgt
    35161 caagccagcc atcgccgcca gatataaccc caccgcacct aacccgtagt tagtctgcaa
    35221 ccaggctgcg atatacggcg caacggaagc cccgagaatc gacgatacgt tgtaagagaa
    35281 cgatgctccg gtgtaacgca cttctgtcgg gaacagctct ggtaacagcg cgcccatcgg
    35341 accgaaggtc agccccatca gacttaaccc cagcagcagg aaggcaaaaa ccagaatcgg
    35401 gttgccagaa ccgagcaaag ggttaaaggc gaatagcgcg aacaggatga gcagcgtggt
    35461 gatgattacc atgcttttac ggcgaccaaa ggcatcagcc agtaatccag cgactggcac
    35521 catcacgcca aaaccaataa ctgccatcat caacatccac aacacttcgt tacgcggcag
    35581 gccaagccca actggcgcgg cggcggtact aaaggtcatg gagtagaccg tcatgatgta
    35641 aaacagcgta taggttgcca gcataatgaa cgtacccagt acggttacgc gaacatgttt
    35701 ggtcagcagc gtacccagcg ggatcttcac ctgttttttc gctttagcga ctttctcaaa
    35761 caccggcgac tcatgcagcg acacgcgaac atacaggccg ataatgacca gcaccgccga
    35821 gaagataaat ggcacacgcc agccccagct cataaactgc tcgtcggtca gtagccagga
    35881 aagcagcaag aaagtgccgt tggcaaagaa gaagccaatc ggtgcgccca gctgcgggaa
    35941 ggagccgtac aatgcacgtt tgcgcggtgg ggcgttttca gtcgccagca gcgccgcgcc
    36001 gccccattca ccacctaagc ccagaccctg accaaatcga gccagcgcca gcagcagcgg
    36061 ggcgaaaata ccaatcgtgg catagcctgg cagcagacca atcaccacgg tcgaaatccc
    36121 catcgttagc aacgaggcga ccagcgtcgc tttacgccca acgcgatcgc caaaatgacc
    36181 aaaaacggca gagccaatag ggcgcgcgac gaaggcgatg gcgaaggtgg cgagcgactg
    36241 tagcgttgct gccgtaggat cgccctgcgg gaagaagata tgcggaaaca caataacggc
    36301 cgcagtggcg taaatgtaaa agtcgaagaa ctcaatggct gtgccaatga gagaggcgac
    36361 aaggacttta ttacgcgagt tgatcggcgt gtattcttgc tcgtggtcga gtgttgtggc
    36421 tgttgcttgc ataatctttt cttatttttt ggctaacgaa tagccatatt acgcacagca
    36481 aaagcgatat ttcaatgtgt aacaaatcgc ggaaatggtc aaaaaccagg caaaaagggg
    36541 ataatgttta ggccagtgat ttttcttcta tgaaatgctt cacataattt tataaatagt
    36601 ggataaaact ggtttcaggt taaataaaag ttaccaactg gatttatatg ctggggttat
    36661 gagttagaat gaaattgttt gctcccaaat agatggctga agaggctctg gggacgagtt
    36721 tcaagaggtt atgtgcgcat tatagccgga tgcgatgctg gcgcatctta tccggcctac
    36781 ggggagccag gccgaataaa atcgtatgcc ggataaggcg tttacgccgc atccggccta
    36841 ttttaaggct gcgttttccc tggcattcgc gggtcgtctt tatattcggc ggtggcaatc
    36901 cacgccgcgc aaaacagcgt caaacgggcg aagaagtaga aaaatgccat cagccccagc
    36961 acggaaccaa atgctgcgcc agagggggat ttcatcagcg atggcagggt gtaggtcatc
    37021 acgattttaa tcacttcaaa accaatagca gccagaaatg ttccgcgaat cagggctttt
    37081 ttgcgcggac ggtggcgcgg caaccgccag aagatccaga agaaaagcag atagttggcg
    37141 aagatggaaa tcgccaggcc aatcaatcgc cacgtcggtt tcagccactc aatgctgttc
    37201 aggtgcaggg cgctaataat catttgctgc gccgaaccgg caaccgaggt gatcgaaagc
    37261 gtcacaatca gcgcaatcaa caaaccaatc agtgaaataa aatcacgcag atattttacc
    37321 cagaacttct cctgatcttg cggcgagcgt tcccagacat cacgcgactg ggcacgaatc
    37381 gcttcacgca ggttacccat ccagttgatg ccggaataaa gtgccaccgc caggccgaca
    37441 agccctacag tcgtacgctg ctgaacggcg gtgttgatgg tgtttttcaa cgtggcggct
    37501 agtgtcggat cgctgatgtt ttgcagaatt ttgtcgaaga tatcctgtag caacatcgga
    37561 tgggaggcca gcacaaagcc ccctgcggca aacgacacca tcaaaatcgg gatcatcgac
    37621 aaaaatgaga aataggtgat agccgcacca aactggttac ccagccgatc gttaaagcgt
    37681 tctgtcgcgc gaatcaggtg cgcaataacc ggttggcgtt ggactttttc ggcagtggtg
    37741 gtgacggttt ccagcgcctg gctaactttg ccgcctttct cgctattatc caactgctta
    37801 atcggctcgt gctccagatc ctgggtggga cgtttgatct cgttttcctg cgtcatccgc
    37861 tcttttgtcc ttctgtcgtg gtcattctta aaaagtatag tcggtcagtc caggtgctct
    37921 ttcattacgc cagccagcca ctgcataaac aggtttacac gccgggaaag ctcccgacgc
    37981 tgcgggtaaa ccagcgaaag ggagagcggc tcggcacggt agccaggtaa tacttcaata
    38041 agccgcccgg cacgcagggc ttcgcgcacg gcaatgcgcg ggatctgaat aatccccaga
    38101 ccggcaagac cggcggcgag atagttttcg ctactattta ccgtcaacat gccgccagac
    38161 ttaaaccact ggacgccatt aacgctggca acctcaaaac ctaacggatg tacacccagg
    38221 tgcggtgtat aacgcactat tgcgtgtgaa gtcagatcat cggggctttg cggataacca
    38281 aagcgcgtca gatagtgcgg actggcacag ttgaccatgg tcagtttgcc gaggggacgg
    38341 gcgataacgc catcttccgg taacgcgcca gtgcgtatca cgcaatcaaa accatcatga
    38401 agaatatcta ccggacggtc atggctactc agttccagct caattcccgg atgcagatag
    38461 agaaattccg acaggcgcgg cagtaacagg tttttcgcga ttcctggcgg gatgtcgatg
    38521 cgtaatttac cgctgatact ggtggcatcc tgttgaaaca gaccgtccag ttcgttgaga
    38581 ttactcaaca catcttttgc ccgttgataa taggtcatgc cttctggcgt gagtttgacc
    38641 cgtcgcgtgg tgcgctggag aagctgggtg ccaagttgat gttccagtgc ctgtatctgg
    38701 cgcgaaacac ttccctttgg caaagcaaag aaatccgctg cgcgggaaaa actttccagc
    38761 tccgcgactt tgatgaacaa ctgcattgcg tgaattttat ccatttcttt gaccgattgt
    38821 tgttcacagc gaaacagtaa cgcgcatatc gcattgttta ttgttttttc taacatctaa
    38881 tgccgggttt cacaatgttg tcatgacgaa tgtggcgatt tctcagcagg aaaagggcgg
    38941 aatagcttta tgagaaaggt gaatcccctt aaacagagcg tatttttcag tgattccctt
    39001 taaagtgaat agaggacgta ttggctattt gtgcttattt ttgtctcatt gccatttgtt
    39061 attttggctt gtagtcgcgg aatttcattt ttaattgcat gcgtactaac caccaatata
    39121 aggaaatcct caaaattgtt ttaaatagtg ccctcgacat gtaatttcag gcgtttagct
    39181 gtaactattt atatcggtaa ctattttcta cgcgtcatct ctgtagaatg gccaccgcca
    39241 aatggcgaat tcttattttt tctcgcgggt aatacccttc cactacttaa gtctttttaa
    39301 catattcagg tggagattca gttatgcaaa tagtcatgtt tgacaggcag tcaatattta
    39361 ttcatggaat gaaaatcagt ttacagcagc gtattccagg ggtgagtatt cagggggcca
    39421 gtcaggcaga cgagttatgg caaaagctgg aaagttaccc tgaagcctta gttatgctcg
    39481 atggcgatca ggatggtgag ttttgctact ggttgctgca aaaaaccgtg gtgcagtttc
    39541 ctgaggttaa ggtgttaatc acggcgacgg attgcaataa acggtggtta caggaagtta
    39601 tccattttaa tgtgctggcc attgtgcctc gtgattcaac cgtcgagaca tttgcgttgg
    39661 cggtaaatag tgcggcgatg gggatgatgt ttctgcctgg agactggcgg acgacgccgg
    39721 aaaaggacat taaagatctc aaatcgttaa gcgcccgcca gcgggagatt ttaaccatgt
    39781 tagcggcggg cgagtcaaat aaggagatcg gcagagcgct gaatatcagt accggaacgg
    39841 taaaagcgca tctggaatcc ctgtatcgcc gtctggaagt gaaaaatcgc acccaggcgg
    39901 caatgatgtt aaatatctcc tcctgaagag gataatttta cagccagcag gaagttagcg
    39961 gctggctgta aaaatattat ggttcgccgt acaaaccaat taaacggcgt accacaccgt
    40021 tagtccagcc aaacccatcc tgcaacggat actcgccacc gccgccttcg cgtggaacac
    40081 catcggcaat atggtatttt tcgatcagtt tgtgctgttc cagatagaac tgattcaccg
    40141 tcttcagcca gcttcgcgcg atttcatcac ccagaaggtc atcgccgtac attttaaatc
    40201 cctgaatcgc catccattgt aacggtgccc agccgttggg tttatcccac tgttcaccgg
    40261 tttcgtactc gcttgccaga atcccgccag gtgtcagtaa ccgactgcgc acggcatttg
    40321 ccagacgatc ggcctgttca tggttcgcca taccgacata gagtggcaca atggcggcag
    40381 cggaaaacag cgccagttgt tcgcgtcgcc agtcgtaatc gcggtagatg ccgttttcat
    40441 catcccagag gtaacgcttt accgcatcgc gacgggcact ggccttctgg cggaacagtg
    40501 cttctgtctc tttctcgcct ttcagcgccg agatgttggc gatggcgctc tccagtttaa
    40561 acaggaaggc attcagatcg atggggatga actgggtggt acgaatactc gccagacgac
    40621 cagtatcacg cagccaacgg gaagagtaat cccaaccgga ggccgccccc gctcgtaaat
    40681 cgcggtacac ctcgttgggc gggcgaccag aatgtttcgc ggtttcaacg tcctcaagcc
    40741 aggattcgtc acgcggcgtg tcgcgatcgt cccagtaacg gttgagcagc gatccgtccg
    40801 gcatccgcac aacatggcga taggcctgat tagggatcaa cgattctgca ccgtccatcc
    40861 agaaggcata ttccattttc aggtggtcga gatagcggcg cgcaccgcgt acaccatctt
    40921 cttcaaacaa ctccaccatc agcgcaaaaa ccggtggttg cgagcggctc aaataatagg
    40981 tgcggttgcc gttggggatg tgaccgtagt tttcgatcat ccaggcgaag ttatcggcca
    41041 tgcatttcag caaatcttcc cgaccacttt ccgccagccc cagcatggtg aaataggaat
    41101 cccaatagta ggtttcgcta aaacggccgc ccgggacaat atatgactgc ggtagcgcca
    41161 gcagagaaga ccacggaatg tgatcctgtg gttcgcgggt tagcaccggc cacagctggt
    41221 cgatatgctc tttcagggaa ttttgcgggt ccgatacata ctcgctggag tagacctccg
    41281 gcagccagaa gtgattttca acaaacttgc gcaagtcaaa atcacgatga cggcgcactt
    41341 tacggtagcg gattaaaata tccagcgggt ccattttggg tgcgcagtcg ggaaaggttt
    41401 tactgtcggg gaaaattttc gccgactgaa catgctcgaa cagttcgaga tagcgatcgg
    41461 caggcgtcag cgcatcagag gcgggcagcc cttcaatcat ctcgggttcc ggttctgcct
    41521 cgatcatctc atccagtttt aattcatacg ggtccagttc atagcagaga tcgacttcga
    41581 tcatcagttc gtctggatta gggttttgaa ttttctgatt gagcataagg atccaacctc
    41641 cgaaattcgt cgctaattat cggcttttct ttaagggtag tcattcgctc cgcctggtgg
    41701 gcgacaaagc gtgcggtgga tcacgtttat taacttgtca aaaaatataa cgcactaata
    41761 tcaatggaat ttataaaaat acggatttgg tgttgttttt cattttcaaa acattcaatc
    41821 ctgctctcgc cgcaatcatg atatgccatt cctgatctgg gtaataggca caggctatct
    41881 tattgatagt ttatattcat gtaattgatt gattcctatc aaaaagcgta tctccctgtt
    41941 ttttatgatg gctttgtctc gcagagacgt ttgcagcatt ctggaaaatt ttctgggtca
    42001 caataactca ccaccgtgag ggaagaataa tgaaaatggt ctcacgtatt accgcgatcg
    42061 gcctggctgg cgtcgcgatt tgctatttag ggttatctgg ttatgtgtgg taccacgata
    42121 ataaacgcag taaacaggcc gatgttcagg catctgctgt cagtgaaaat aataaggttt
    42181 taggctttct ccgcgaaaaa ggatgcgact attgccacac gccttcggca gaattacccg
    42241 cctattatta tattcctggc gcgaaacagt tgatggatta cgacattaag cttggatata
    42301 aatcttttaa cctcgaggcc gtgcgtgcgg cactgctggc tgataaaccc gtttcgcaaa
    42361 gcgatctgaa taagattgaa tgggtgatgc agtatgaaac tatgccacca acgcgttata
    42421 ccgcgctaca ctgggcgggt aaggtgagtg atgaagagcg ggcggaaata ctggcctgga
    42481 ttgcaaaaca gcgcgcggaa tattacgcca gcaatgatac tgctccggag catcgcaatg
    42541 aaccggtgca gcccatcccg caaaaactgc ctaccgatgc gcaaaaagtg gcgttgggct
    42601 ttgcgctgta tcacgatccc cgtttatcgg ctgatagcac catttcatgc gctcattgcc
    42661 atgcgttgaa tgcggggggc gtcgatggca gaaaaacatc gattggtgtt ggtggcgcag
    42721 ttgggccgat taacgcgccg acggtattta actcagtatt taacgttgag cagttctggg
    42781 atggtcgtgc ggcaacattg caggatcagg caggtggacc gccgttgaac ccgattgaaa
    42841 tggcgtcgaa atcctgggac gaaattattg ctaagctgga aaaagatccg cagcttaaag
    42901 cgcagttcct cgaagtttat ccgcaaggtt tcagtggcga aaatattact gatgccattg
    42961 ctgaatttga gaaaacatta attacgccgg attccccatt tgataaatgg ttgcgtggag
    43021 atgaaaatgc gctgacggcg caacagaaaa aaggctatca attatttaaa gataataaat
    43081 gtgcaacttg tcatggtggt attattctcg gcggacgttc ctttgaaccg ttggggctga
    43141 aaaaagactt taactttggg gaaattacgg cggcggatat tggtcgtatg aatgtgacta
    43201 aagaagagcg tgataaattg cgccagaaag tacccggttt acgtaacgtt gctttaacgg
    43261 caccgtactt ccatcgcggt gacgtgccga cgctggacgg ggcggtgaaa ctgatgctgc
    43321 gctatcaggt aggcaaagag ctgccgcagg aggatgtgga tgatatcgta gctttcctgc
    43381 acagtctgaa cggggtgtac acgccgtata tgcaggataa acaataacta atttgatcgc
    43441 ccgaacagga atgtttgggc gatttttatt acgataataa agtctgtttt taatattatc
    43501 atgttaaatg tttatattat aaaaagtcgt ttttctgctt aggattttgt tatttaaatt
    43561 aagcctgtaa tgccttgctt ccattgcgga taaatcctac ttttttattg ccttcaaata
    43621 aatttaagga gttcgaaatg gaccagaagc tgttaacgga tttccgctca gaactactcg
    43681 attcacgttt tggcgcaaag gccatttcta ctatcgcgga gtcaaaacga tttccgctgc
    43741 acgaaatgcg cgatgatgtc gcatttcaga ttatcaatga tgaattatat cttgatggca
    43801 acgctcgtca gaacctggcc actttctgcc agacctggga cgacgaaaac gtccataaat
    43861 tgatggattt gtcgatcaa
//
LOCUS       DADMJB010000009        43390 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.009, whole genome shotgun sequence.
ACCESSION   DADMJB010000009 DADMJB010000000
VERSION     DADMJB010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 43390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 43390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..43390
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.009"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            164..421
                     /locus_tag="JN078_000495"
                     /pseudo
     CDS             164..421
                     /locus_tag="JN078_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708736.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine decarboxylase"
     gene            complement(471..1727)
                     /locus_tag="JN078_000496"
     CDS             complement(471..1727)
                     /locus_tag="JN078_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311867.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside permease"
                     /protein_id="HAY9039806.1"
                     /translation="MNLKLQLKILSFLQFCLWGSWLTTLGSYMFVTLKFDGASIGAVY
                     SSLGIAAVFMPALLGIVADKWLSAKWVYAICHTIGAITLFMAAQVTTPEAMFLVILIN
                     SFAYMPTLGLINTISYYRLQNAGMDIVTDFPPIRIWGTIGFIMAMWVVSLSGFELSHM
                     QLYIGAALSAILVLFTLTLPHIPVAKQQANQSWTTLLGLDAFALFKNKRMAIFFIFSM
                     LLGAELQITNMFGNTFLHSFDKDPMFASSFIVQHASIIMSISQISETLFILTIPFFLS
                     RYGIKNVMMISIVAWILRFALFAYGDPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVE
                     KEVSPAIRASAQGMFLMMTNGFGCILGGIVSGKVVEMYTQNGITDWQTVWLIFAGYSV
                     VLAFAFMAMFKYKHVRVPTGTQTVSH"
     gene            complement(1929..3008)
                     /gene="mltC"
                     /locus_tag="JN078_000497"
     CDS             complement(1929..3008)
                     /gene="mltC"
                     /locus_tag="JN078_000497"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417438.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltC"
                     /protein_id="HAY9039807.1"
                     /translation="MKKYLALALIAPLLISCSTTKKGDTYNEAWVKDTNGFDILMGQF
                     AHNIENIWGFKEVVIAGPKDYVKYTDQYQTRSHINFDDGTITIETIAGTEPAAHLRRA
                     IIKTLLMGDDPSSVDLYSDVDDITISKEPFLYGQVVDNTGQPIRWEGRASNFADYLLK
                     NRLQSRSNGLRIIYSVTINMVPNHLDKRAHKYLGMVRQASRKYGVDESLILAIMQTES
                     SFNPYAVSRSDALGLMQVVQHTAGKDVFRSQGKSGTPSRSFLFDPASNIDTGTAYLAM
                     LNNVYLGGIDNPTSRRYAVITAYNGGAGSVLRVFSNDKIQAANIINTMTPGDVYQTLT
                     TRHPSAESRRYLYKVNTAQKSYRRR"
     gene            complement(3073..3348)
                     /locus_tag="JN078_000498"
     CDS             complement(3073..3348)
                     /locus_tag="JN078_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HAY9039808.1"
                     /translation="MSRTIFCTFLQREAEGQDFQLYPGELGKRIYNEISKEAWAQWQH
                     KQTMLINEKKLNMMNAEHRKLLEQEMVNFLFEGKEVHIEGYTPEDKK"
     gene            complement(3376..4428)
                     /gene="mutY"
                     /locus_tag="JN078_000499"
     CDS             complement(3376..4428)
                     /gene="mutY"
                     /locus_tag="JN078_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HAY9039809.1"
                     /translation="MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQ
                     VATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGG
                     KFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEV
                     ENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWSL
                     YPGKKPKQTLPERTGYFLLLQHEDEVLLAQRPPSGLWGGLYCFPQFADEESLRQWLAQ
                     RQIAADNLTQLTAFRHTFSHFHLDIVPMWLPVSSFTGCMDEGNALWYNLAQPPSVGLA
                     APVERLLQQLRTGAPV"
     gene            4589..5308
                     /gene="trmB"
                     /locus_tag="JN078_000500"
     CDS             4589..5308
                     /gene="trmB"
                     /locus_tag="JN078_000500"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HAY9039810.1"
                     /translation="MKNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPV
                     MGVEFSEDMLDFPALFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGA
                     CLASAHEEGLNNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVP
                     FAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKNLSESNDYVPRPASRPVTK
                     FEQRGHRLGHGVWDLMFERVK"
     gene            5308..5634
                     /locus_tag="JN078_000501"
     CDS             5308..5634
                     /locus_tag="JN078_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF469 domain-containing protein"
                     /protein_id="HAY9039811.1"
                     /translation="MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKTVDD
                     FINEVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEEHQAIVRKWLEERKLDEVRTSEL
                     FDVWWD"
     gene            5818..6537
                     /locus_tag="JN078_000502"
     CDS             5818..6537
                     /locus_tag="JN078_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2884 domain-containing protein"
                     /protein_id="HAY9039812.1"
                     /translation="MMRKMLLAAALSVTAMTAHADYQCSVTPRDDVIVSPQTVQVKGE
                     NGNLVITPDGNVMYNGKQYSLNAAQREQAKDYQAELRSTLPWIDEGAKSRVEKARIAL
                     DKIIVQEMGESSKMRSRLTKLDAQLKEQMNRIIETRSDGLTFHYKAIDQVRAEGQQLV
                     NQAMGGILQDSINEMGAKAVLKSGGNPLQNVLGSLGGLQSSIQTEWKKQEKDFQQFGK
                     DVCSRVVTLEDSRKALVGNLK"
     gene            6713..7759
                     /gene="ansB"
                     /locus_tag="JN078_000503"
     CDS             6713..7759
                     /gene="ansB"
                     /locus_tag="JN078_000503"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparaginase 2"
                     /protein_id="HAY9039813.1"
                     /translation="MEFFKKTALAALVMGFSGAALALPNITILATGGTIAGGGDSATK
                     SNYTAGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKT
                     DGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAAD
                     KASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARK
                     HTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVF
                     DTLATAAKNGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQ
                     TKDPQQIQQIFNQY"
     gene            7876..8883
                     /locus_tag="JN078_000504"
     CDS             7876..8883
                     /locus_tag="JN078_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1202 family protein"
                     /protein_id="HAY9039814.1"
                     /translation="MKKQWIVGTALLMLMTGNAWADGEPPTENILKDQFKKQYHGILK
                     LDAITLKNLDAKGNQATWSAEGDVSSSDDLYTWVGQLADYELLEQTWTKDKPVKFSAM
                     LTSKGTPASGWSVNFYSFQSAASDRGRVVDDIKTNNKYLIVNSEDFNYRFSQLESALN
                     TQKNSIPALEKEVKALDKQMVAAQKAADAYWGKDANGKQMTREEAFKKIHQQRDEFNK
                     QNDSEAFAVKYDKEVYQPAIAACHKQSEECYEVPIQQKRDFDINEQRRQTFLQSQKLS
                     RKLQDDWVTLEKGQYPLTMKVSEINSKKVAILMKIDDINQANERWKKDTEQLRRNGVI
                     K"
     gene            complement(9038..10174)
                     /gene="hemW"
                     /locus_tag="JN078_000505"
     CDS             complement(9038..10174)
                     /gene="hemW"
                     /locus_tag="JN078_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HAY9039815.1"
                     /translation="MVKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLL
                     CDLDNDVAYAQGREVKTIFIGGGTPSLLSGPAMQTLLDGVRARLPLAADAEITMEANP
                     GTVEADRFVDYQRAGVNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSF
                     NLDLMHGLPDQSLEEALGDLRQAIELNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALW
                     DIFEQGHQLLTAAGYQQYETSAYAKPGYQCQHNLNYWRFGDYIGIGCGAHGKVTFPDG
                     RILRTTKTRHPRGFMQGRYLESQRDVEAADKPFEFFMNRFRLLEAAPRAEFSAYTGLC
                     EDVIRPQLDEAIAQGYLTECADYWQITEHGKLFLNSLLELFLAE"
     gene            complement(10167..10760)
                     /locus_tag="JN078_000506"
     CDS             complement(10167..10760)
                     /locus_tag="JN078_000506"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XTP/dITP diphosphatase"
                     /protein_id="HAY9039816.1"
                     /translation="MQKVVLATGNAGKVRELASLLSDFGLDIVAQTDLGVDSAEETGL
                     TFIENAILKARHAAKVTGLPAIADDSGLAVDALGGAPGIYSARYSGEDATDQKNLQKL
                     LETLKDVPDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIF
                     FVPSEGKTAAELTREEKSAISHRGQALKLLLDALRNG"
     gene            complement(10768..11058)
                     /locus_tag="JN078_000507"
     CDS             complement(10768..11058)
                     /locus_tag="JN078_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417428.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggU family protein"
                     /protein_id="HAY9039817.1"
                     /translation="MNAVTVNDDGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVD
                     GQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQIKIINPQQIPPEIAALIN"
     gene            complement(11055..11621)
                     /gene="yggT"
                     /locus_tag="JN078_000508"
     CDS             complement(11055..11621)
                     /gene="yggT"
                     /locus_tag="JN078_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotic shock tolerance protein YggT"
                     /protein_id="HAY9039818.1"
                     /translation="MNTLTFLLSTVIELYTMVLLLRIWMQWAHCDFYNPFSQFVVKVT
                     QPIIGPLRRVIPAMGPIDSASLLVAYILSFIKAIVLFKVVTFLPIIWIAGLLILLKTI
                     GLLIFWVLLVMAIMSWVSQGRSPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVL
                     LLYVINMGVAEVLQATGNILLPGMWMAL"
     gene            complement(11639..12343)
                     /gene="yggS"
                     /locus_tag="JN078_000509"
     CDS             complement(11639..12343)
                     /gene="yggS"
                     /locus_tag="JN078_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate homeostasis protein"
                     /protein_id="HAY9039819.1"
                     /translation="MNDIAHNLAQVRDKILAAATRCGRSPEEITLLAVSKTKPASAIA
                     EAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHT
                     IDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRL
                     RGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTM
                     VRIGTAIFGARDYSKK"
     gene            12361..13341
                     /locus_tag="JN078_000510"
     CDS             12361..13341
                     /locus_tag="JN078_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417425.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HAY9039820.1"
                     /translation="MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGLMEAAPFDALDV
                     EELLREWLDDDQRAILLENGQLDFAVSLAENQRLRGSAFAQRHGISLALRLLPSHCPQ
                     LEQLGAPTVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
                     YIYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETG
                     HLVLATLHTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVAL
                     FELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQRVGEGRL"
     gene            complement(13517..13933)
                     /gene="ruvX"
                     /locus_tag="JN078_000511"
     CDS             complement(13517..13933)
                     /gene="ruvX"
                     /locus_tag="JN078_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HAY9039821.1"
                     /translation="MSGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNL
                     IERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTVE
                     ARSGLFEQGGYRALNKGKVDSASAVIILESYFEQGY"
     gene            complement(13933..14568)
                     /locus_tag="JN078_000512"
     CDS             complement(13933..14568)
                     /locus_tag="JN078_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708713.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HAY9039822.1"
                     /translation="MTAPFFPRILGAVAFLNQETEPLTMNLQHHFLIAMPALQDPIFR
                     RSVVYICEHNTNGAMGIIVNKPLENLKIEGILEKLKITPEPRDESIRLDKPVMLGGPL
                     AEDRGFILHTPPSNFASSIRISDNTVMTTSRDVLETLGTDKQPSDVLVALGYASWEKG
                     QLEQEILDNAWLTASADLNILFKTPIADRWREAAKLIGVDILTMPGVAGHA"
     gene            complement(14605..15555)
                     /gene="gshB"
                     /locus_tag="JN078_000513"
     CDS             complement(14605..15555)
                     /gene="gshB"
                     /locus_tag="JN078_000513"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HAY9039823.1"
                     /translation="MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLY
                     LINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVLLMRKDPPFDTEFIYATYIL
                     ERAEEKGTLIVNKPQSLRDCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILK
                     PLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEP
                     VPYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIG
                     DRLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQQQ"
     gene            complement(15568..16299)
                     /gene="rsmE"
                     /locus_tag="JN078_000514"
     CDS             complement(15568..16299)
                     /gene="rsmE"
                     /locus_tag="JN078_000514"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311849.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HAY9039824.1"
                     /translation="MRIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFD
                     GSNQVFDAEITSASKKSVEVKVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIEL
                     GVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWC
                     AEQDEGLKLNLHPRASNSINTLPLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLG
                     PRVLRTETTALTAITALQVRFGDLG"
     gene            complement(16379..17086)
                     /gene="endA"
                     /locus_tag="JN078_000515"
     CDS             complement(16379..17086)
                     /gene="endA"
                     /locus_tag="JN078_000515"
                     /EC_number="3.1.21.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease I"
                     /protein_id="HAY9039825.1"
                     /translation="MYRYLSIAAVVLSAAFSGPALAEGINSFSQAKAAAVKVHADAPG
                     TFYCGCKINWQGKKGVVDLQSCGYQVRKNENRASRVEWEHVVPAWQFGHQRQCWQDGG
                     RKNCAKDPVYRKMESDMHNLQPSVGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKEK
                     AAEPPARARGAIARTYFYMRDQYNLTLSRQQTQLFNAWNKMYPVTDWECERDERIAKV
                     QGNHNPYVQRACQARKS"
     gene            complement(17181..17678)
                     /locus_tag="JN078_000516"
     CDS             complement(17181..17678)
                     /locus_tag="JN078_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HAY9039826.1"
                     /translation="MKTSRLPIAIQQAVMRRLREKLAQANLKLGRNYPEPKLSYTQRG
                     TSAGTAWLESYEIRLNPVLLLENSEAFIEEVVPHELAHLLVWKHFGRVAPHGKEWKWM
                     MENVLGVPARRTHQFELQSVRRNTFPYRCKCQEHQLTVRRHNRVVRGEAVYRCVHCGE
                     QLVAK"
     gene            complement(17755..19149)
                     /locus_tag="JN078_000517"
     CDS             complement(17755..19149)
                     /locus_tag="JN078_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar porter family MFS transporter"
                     /protein_id="HAY9039827.1"
                     /translation="MPDAKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIA
                     DEFQITSHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAA
                     PNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLS
                     DTAFSYTGAWRWMLGVIIIPAILLLIGVFFLPDSPRWFAAKRRFVDAERVLLRLRDTS
                     AEAKRELDEIRESLQVKQSGWALFKENSNFRRAVFLGVLLQVMQQFTGMNVIMYYAPK
                     IFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVL
                     GTMMHIGIHSPSAQYFAIAMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTA
                     TNWIANMIVGATFLTMLNTLGNANTFWVYAALNVLFILLTLWLVPETKHVSLEHIERN
                     LMKGRKLREIGAHD"
     gene            complement(19585..20739)
                     /gene="metK"
                     /locus_tag="JN078_000518"
     CDS             complement(19585..20739)
                     /gene="metK"
                     /locus_tag="JN078_000518"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HAY9039828.1"
                     /translation="MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACET
                     YVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPD
                     INQGVDRADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPW
                     LRPDAKSQVTFQYDDGKIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLT
                     SATTFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAA
                     YAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFF
                     DLRPYGLIQMLDLLHPIYKETAAYGHFGREHFPWEKTDKAQLLRDAAGLK"
     gene            complement(21043..21258)
                     /locus_tag="JN078_000519"
     CDS             complement(21043..21258)
                     /locus_tag="JN078_000519"
                     /inference="COORDINATES: protein motif:HMM:NF037550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9039829.1"
                     /translation="MGITSAGMQSRDAECGERIFTRTVRQVKQQTTVHYFVSPPRPPV
                     KTNPQAKTLISTRLEVATRKKRRVLFI"
     gene            21394..21525
                     /gene="yqgB"
                     /locus_tag="JN078_000520"
     CDS             21394..21525
                     /gene="yqgB"
                     /locus_tag="JN078_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417414.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid stress response protein YqgB"
                     /protein_id="HAY9039830.1"
                     /translation="MKKKPVAQLERQHSLLENPCAYGLLSQFQAAIVVNCFTLNKII"
     gene            21534..23510
                     /gene="speA"
                     /locus_tag="JN078_000521"
     CDS             21534..23510
                     /gene="speA"
                     /locus_tag="JN078_000521"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HAY9039831.1"
                     /translation="MSDDMSMGLPSSAGEHGVLRSMQEVAMSSQEASKMLRTYNIAWW
                     GNNYYDVNELGHISVCPDPDVPEARVDLAQLVKTREAQGQRLPALFCFPQILQHRLRS
                     INAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLA
                     HAGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPR
                     LGVRARLASQGSGKWQSSGGEKSKFGLAATQVLQLVETLREAGRLDSLQLLHFHLGSQ
                     MANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNE
                     YANNIIWAIGDACEENGLPHPTVITESGRAVTAHHTVLVSNIIGVERNEYTVPTAPAE
                     DAPRALQSMWETWQEMHEPGTRRSLREWLHDSQMDLHDIHIGYSSGTFSLQERAWAEQ
                     LYLSMCHEVQKQLDPQNRAHRPIIDELQERMADKMYVNFSLFQSMPDAWGIDQLFPVL
                     PLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEYDPENPPMLGFFMVG
                     AYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELSDEGDTVADMLQYVQLDPKTLLTQF
                     RDQVKKTDLDAELQQQFLEEFEAGLYGYTYLEDE"
     gene            23647..24567
                     /gene="speB"
                     /locus_tag="JN078_000522"
     CDS             23647..24567
                     /gene="speB"
                     /locus_tag="JN078_000522"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HAY9039832.1"
                     /translation="MSTLGHQYDNSLVSNAFGFLRLPMNFQPYDSDADWVITGVPFDM
                     ATSGRAGGRHGPAAIRQVSTNLAWEHNRFPWNFDMRERLNVVDCGDLVYAFGDAREMS
                     EKLQAHAEKLLAAGKRMLSFGGDHFVTLPLLRAHAKHFGKMALVHFDAHTDTYANGCE
                     FDHGTMFYTAPKEGLIDPNHSVQIGIRTEFDKDNGFTVLDACQVNDRSVDDVIAQVKQ
                     IVGDMPVYLTFDIDCLDPAFAPGTGTPVIGGLTSDRAIKLVRGLKDLNIVGMDVVEVA
                     PAYDQSEITALAAATLALEMLYIQAAKKGE"
     gene            complement(24773..25531)
                     /locus_tag="JN078_000523"
     CDS             complement(24773..25531)
                     /locus_tag="JN078_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311838.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HAY9039833.1"
                     /translation="MKIRALLVAMSVATVLTGCQNMDSNGLLSSGAEAFQAYSLSDAQ
                     VKTLSDQACQEMDSKATIAPANSEYAKRLTTIANALGNNINGQPVNYKVYMAKDVNAF
                     AMANGCIRVYSGLMDMMTDNEVEAVIGHEMGHVALGHVKKGMQVALGTNAVRVAAASA
                     GGIVGSLSQSQLGDLGEKLVNSQFSQRQEAEADDYSYDLLRQRGISPAGLATSFEKLA
                     KLEEGRQSSMFDDHPASAERAQHIRDRMSADGIK"
     gene            25801..27792
                     /gene="tkt"
                     /locus_tag="JN078_000524"
     CDS             25801..27792
                     /gene="tkt"
                     /locus_tag="JN078_000524"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HAY9039834.1"
                     /translation="MSSRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDF
                     LKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPE
                     VGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMME
                     GISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDG
                     HDAASIKRAVEEARAVTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQ
                     LGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMP
                     SDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSG
                     SKAINEDAAGNYIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAAL
                     MKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVE
                     RQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCAGQPELIFIATGSEVELAVA
                     AYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVG
                     LNGAIIGMTTFGESAPAELLFEEFGFTVDNVVAKAKELL"
     gene            28106..28549
                     /gene="cmtB"
                     /locus_tag="JN078_000525"
     CDS             28106..28549
                     /gene="cmtB"
                     /locus_tag="JN078_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001239649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IIA"
                     /protein_id="HAY9039835.1"
                     /translation="MRLSDYFPESSISVIHSAKDWQEAIDFSMVSLLDKNYISENYIQ
                     AIKDSTINNGPYYILAPGVAMPHARPECGALKTGMSLTLLEQGVYFPGNDEPIKLLIG
                     LSAADADSHIGAIQALSELLCEEEILEQLLTASSEKQLADIISHR"
     gene            28577..29965
                     /locus_tag="JN078_000526"
     CDS             28577..29965
                     /locus_tag="JN078_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICB"
                     /protein_id="HAY9039836.1"
                     /translation="MENKSARAKVQAFGGFLTAMVIPNIGAFIAWGFITALFIPTGWL
                     PNEHFAKIVGPMITYLLPVMIGSTGGHLVGGKRGAVMGGIGTIGVIVGAEIPMFLGSM
                     IMGPLGGLVIKYVDKALEKRIPAGFEMVINNFSLGIAGMLLCLLGFEVIGPAVLIANT
                     FVKECIEALVHAGYLPLLSVINEPAKVLFLNNAIDQGVYYPLGMQQASVNGKSIFFMV
                     ASNPGPGLGLLLAFTLFGKGMSKRSAPGAMIIHFLGGIHELYFPYVLMKPLTIIAMIA
                     GGMSGTWMFNLLDGGLVAGPSLGSIFAYLALTPKGSFLATIAGVTVGTLVSFAITSLI
                     LKMEKTVETESEDEFAQSTNAVKAMKQEGAFSLSRVKRIAFVCDTGMGSSAMGATTFR
                     KRLEKAGLAIEVKHYAIENVPADADIVVTHASLEGRVKRVTDKPLILINNYIGDPKLD
                     TLFNQLTAEHKH"
     gene            29980..31257
                     /locus_tag="JN078_000527"
     CDS             29980..31257
                     /locus_tag="JN078_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HAY9039837.1"
                     /translation="MKTKVAAIYGKRDVRLREFELPEITDNELLVSVISDSVCLSTWK
                     AALLGSEHKRVPDDLENHPVITGHECAGVIVEVGKNLTGKYKKGQRFVLQPAMGLPSG
                     YSAGYSYEYFGGNATYMIIPEIAINLGCVLPYHGSYFAAASLVEPMCCIIGAYHANYH
                     TTQYVYEHRMGVKPGGNIALLACAGPMGIGAIDYAINGGIQPSRVVVVDIDDKRLAQV
                     QKLLPVDLAASKGIELVYVNTKGMSDPVQTLRALTGDVGFDDIFVYAAVPAVVEMADE
                     LLAEDGCLNFFAGPTDKNFKVPFNFYNVHYNSTHVVGTSGGSTDDMKEAIALSATGQL
                     QPSFMVTHIGGLDAVPDTVLNLPDIPGGKKLIYNGVTMPLTAIADFAEKGKTDPLFKE
                     LARLVEETHGIWNEQAEKYLLAQFGIDIGEAAQ"
     gene            31254..32219
                     /gene="yggF"
                     /locus_tag="JN078_000528"
     CDS             31254..32219
                     /gene="yggF"
                     /locus_tag="JN078_000528"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HAY9039838.1"
                     /translation="MMSLAWPLFRVTEQAALAAWPQTGCGDKNKIDGLAVTAMRQALN
                     DVAFRGRVVIGEGEIDHAPMLWIGEEVGKGDGPEVDIAVDPIEGTRMVAMGQSNALAV
                     MAFAPRDSLLHAPDMYMKKLVVNRLAAGVIDLSLPLADNLRNVARALGKPLDKLRMVT
                     LDKPRLSAAIEEATQLGVKVFALPDGDVAASVLTCWQDNPYDVMYTIGGAPEGVISAC
                     AVKALGGDMQAELIDFCQAKGDYTENRQIAEQESKRCKAMGVDVNRVYSLDELVRGND
                     ILFSATGVTGGELVNGIQQTANGVRTQTLLIGGADQTCNIIDSLH"
     gene            32241..32750
                     /gene="fumE"
                     /locus_tag="JN078_000529"
     CDS             32241..32750
                     /gene="fumE"
                     /locus_tag="JN078_000529"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarase E"
                     /protein_id="HAY9039839.1"
                     /translation="MAKLTEDDVLEQLDAQDNLFSFMKTAHSILLQGIRQFLPSLFVD
                     NDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQD
                     ETPGFADDMTWDFISNVNSITRNAMLYDALKAMKFADFAVWSEARFSGMVKTALTLAV
                     TTILKELTP"
     gene            32747..33460
                     /locus_tag="JN078_000530"
     CDS             32747..33460
                     /locus_tag="JN078_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside/nucleotide kinase family protein"
                     /protein_id="HAY9039840.1"
                     /translation="MKIELTVNGLKIQAQYQNEEIENVHKPLLRMLAALQTVNPQRRT
                     VVFLCAPPGTGKSTLTTFWEYLAQQDPELPAIQTLPMDGFHHYNSWLDAHQLRPFKGA
                     PETFDVAKLAENLRQVVEGDCTWPQYDRQKHDPVEDALHVTAPLVIVEGNWLLLDDEK
                     WCQLAQFCDFSIFINAPATALRERLVGRKLAGGVSLADAEAFYDRTDGPNVRRVLEES
                     LPANLTLMMTATGEYRLVD"
     gene            complement(33432..34109)
                     /locus_tag="JN078_000531"
     CDS             complement(33432..34109)
                     /locus_tag="JN078_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708691.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HAY9039841.1"
                     /translation="MLTLNQISYRWPGAATDCLCDISLQLKQGEWLALTGDNGAGKST
                     LLRVMAGLLTPTAGTVMLQQQAMKNLKNRQRAAKVGVLFQEAENQLFHSTVADEIAFG
                     LKLQKCPADEITQRTHAALQCCQLADTANSHPLDLHSAQRRMVAVACLEALSPPLLLL
                     DEPSRDFDENWLSVFESWLEKCRQRGTSVVAISHDAAFTRRHFSRVVRLEDGVIRNVN
                     PPDDIHP"
     gene            complement(34103..34780)
                     /locus_tag="JN078_000532"
     CDS             complement(34103..34780)
                     /locus_tag="JN078_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     ATP-binding protein"
                     /protein_id="HAY9039842.1"
                     /translation="MVTLEQFRYCPTHSTHPPFCYDFHYVKPGMVAIFGDNGSGKSTL
                     AQLMAGWYPDFLPGEITGTGTLLGTPIGHLPLNEQSATIQLVQQSPYLQLSGCTFSVE
                     EEVAFGPENLCLAEAEIMARIDAALTLTECQPLRHRHPATLSGGETQRVVIACAIAMQ
                     PKLLILDEAFSRLTPQASEMLLQRLQHWAFERGSLIILFERHRTPFLNYCQQAWQLQN
                     GALQPLC"
     gene            complement(34768..35475)
                     /locus_tag="JN078_000533"
     CDS             complement(34768..35475)
                     /locus_tag="JN078_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HAY9039843.1"
                     /translation="MHPFTSLTLWALAACTTLILPAQTILPIYSAATFFCLIALKATR
                     RRAKYVVWLMFSLGAGLWLVHGGWLPEWLSGTPRSPERWSHAITLWLRILVIVSTSQL
                     WMQYVPVQCFIRALFASRLPPGVAYLFAGPLLVVEQLKRQLAIIHEAQRARGVPLDEG
                     WYQRLRAMPALIIPLTHNALNDLAVRGAALDMRAFRIHNRRTTLWAPADSTLQRVARY
                     TMILLMLTEFGAWIWLR"
     gene            complement(35476..36054)
                     /locus_tag="JN078_000534"
     CDS             complement(35476..36054)
                     /locus_tag="JN078_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HAY9039844.1"
                     /translation="MARSHFSSQALVLIVISIAINMIGGQLASMVKLPIFLDSIGTLI
                     SAVLLGPVIGMLTGLLTNLLWGLLTDPIAAAFAPVAMVIGLVAGWLARAGWFRTLPKV
                     VVSGVIITLAVTVVAVPLRTALFGGVTGSGADLFVAWMHSMGQNLVESVAITVIGANL
                     VDKILTAVIVWLLLRQLPIRTTRHFPAMAAVR"
     gene            complement(36077..36508)
                     /locus_tag="JN078_000535"
     CDS             complement(36077..36508)
                     /locus_tag="JN078_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HAY9039845.1"
                     /translation="MMTLPYPYSSSARFYALRLLPGQEVFSQLHAFAQQHQLHAAWIA
                     GCTGSLTDVALRYARQEGTTLLNGTFEVISLNGTLEQSGEHLHLCVSDPHGTMLGGHM
                     MPGCTVRTTLELVIGSLEELAFSRQPCALSGYDELHISPVK"
     gene            36880..37899
                     /gene="epd"
                     /locus_tag="JN078_000536"
     CDS             36880..37899
                     /gene="epd"
                     /locus_tag="JN078_000536"
                     /EC_number="1.2.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="erythrose-4-phosphate dehydrogenase"
                     /protein_id="HAY9039846.1"
                     /translation="MTVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGM
                     AHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGV
                     YGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCI
                     IPVIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAG
                     ITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIV
                     DYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA
                     TVAFR"
     gene            37949..39112
                     /gene="pgk"
                     /locus_tag="JN078_000537"
     CDS             37949..39112
                     /gene="pgk"
                     /locus_tag="JN078_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HAY9039847.1"
                     /translation="MSVIKMTDLDLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTI
                     ELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDGVDVA
                     EGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADV
                     ACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIA
                     NTFIAAQGHDVGKSLYEADLVDEAKRLLTTCNIPVPSDVRVATEFSETAPATLKSVND
                     VKADEQILDIGDASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA
                     FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEERAKK"
     gene            39327..40406
                     /gene="fbaA"
                     /locus_tag="JN078_000538"
     CDS             39327..40406
                     /gene="fbaA"
                     /locus_tag="JN078_000538"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016505616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HAY9039848.1"
                     /translation="MSKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSIN
                     AVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYG
                     VPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSK
                     YLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFT
                     IAASFGNVHGVYKPGNVVLTPTILRDSQEYVSKKHNLPHNSLSFVFHGGSGSTAQEIK
                     DSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVW
                     LRAGQTSMIARLEKAFQELNAIDVL"
     gene            40764..41624
                     /locus_tag="JN078_000539"
     CDS             40764..41624
                     /locus_tag="JN078_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small-conductance mechanosensitive channel MscS"
                     /protein_id="HAY9039849.1"
                     /translation="MEDLNVVDSINGAGSWLVANQALLLSYAVNIVAALAIIIVGLII
                     ARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA
                     AGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADG
                     KIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKD
                     REMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVN
                     FKRVKEDKAA"
     gene            41763..42398
                     /gene="argO"
                     /locus_tag="JN078_000540"
     CDS             41763..42398
                     /gene="argO"
                     /locus_tag="JN078_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine exporter ArgO"
                     /protein_id="HAY9039850.1"
                     /translation="MFSYYFQGLDLGAAMILPLGPQNAFVMNQGIRRQYHIMIALLCA
                     ISDLVLICAGIFGGSALLMQSPWLLALVTWGGVVFLLWYGFGAFKTAMSSNIELASAE
                     VLKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQLDVEPKRWFALGTISASFLWF
                     FGLAILAAWLAPRLRTAKSQRIINLVVGCVMWFIALQLARDGIAHAQALFS"
     gene            42491..43231
                     /locus_tag="JN078_000541"
     CDS             42491..43231
                     /locus_tag="JN078_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative stress defense protein"
                     /protein_id="HAY9039851.1"
                     /translation="MKFKVIALAALMGISGMAAQANELPDGPHIVTSGTASVDAVPDI
                     ATLAIEVNVAAKDAATAKKQADERVAQYISFLELNQIAKKDISSANLRTQPDYDYQDG
                     KSILKGYRAVRTVEVTLRQLDKLNSLLDGALKAGLNEIRSVSLGVAQPDAYKDKARKA
                     AIDNAIHQAQELANGFHRKLGPVYSVRYHVSNYQPSPMVRMMKADAAPVSAQETYEQA
                     AIQFDDQVDVVFQLEPVDQQPAKTPAAQ"
BASE COUNT        10607 a        10828 c        11560 g        10395 t
ORIGIN      
        1 atctaacccg acgtacaatg tgttattgtt gttcatgctg gcctccgtgg tggaaatacc
       61 ggggtgtagc aacagctcac ccatgcggct ctgacaacga tgttaacccg cgttaaatat
      121 cccacgttgg ccagcatctg tctcacggaa agtcatactg ccttatattc gcggtgaagt
      181 ggagttggtg cggattcgtg atgccgaagg gcgaattgcg gcagaagggg cgttgcctta
      241 tccacctggc gtgctttgcg tggtacccgg ggaagtctgg ggtggggcgg ttcaacgtta
      301 tttccttgca ctggaagaag gggtaaattt gttgccggga ttttcgccgg agctgcaagg
      361 tgtttatagc gaaaccgatg cggatggcat gaaacggttg tacggttatg tgttgaagta
      421 agaataaaaa aaacgggtca ccttctggcg acccgttttt ctttgcgtaa ttagtggcta
      481 accgtctgtg tgcctgtcgg gacacgaacg tgtttatatt tgaacatcgc catgaacgcg
      541 aaggccagaa ccacggagta accagcgaaa atcaaccata cggtctgcca gtcggtaatg
      601 ccgttttggg tgtacatctc aacaacttta ccgctcacga tgccgccgag gatacagccg
      661 aagccgttag tcatcatcag gaacatccct tgtgcactgg cgcgaattgc cgggctaact
      721 tctttttcga caaacaccga accagagatg ttgaagaagt cgaatgcgca accgtaaacg
      781 atcatcgaca gtaccagcag tacagtaccg aacggagtcg ggtcgccgta agcaaacagc
      841 gcaaaacgca ggatccacgc cacaatactg atcatcatta cgttcttaat accgtagcgg
      901 cttaagaaga acgggatggt cagaatgaac agggtttcag agatctgcga aatcgacatg
      961 atgattgacg catgctgcac aataaagctg ctggcaaaca tcggatcttt gtcgaagctg
     1021 tgcaggaagg tattaccgaa catgttggta atctgcagtt ccgcgcccag cagcattgag
     1081 aagataaaga agattgccat acgcttgttt ttaaacagcg cgaatgcatc gaggcccagc
     1141 agggttgtcc agctctgatt cgcttgctgt ttagcaaccg gaatatgcgg cagagtcagg
     1201 gtaaacagaa ccagaatggc ggaaagtgct gcgccaatat acagctgcat gtggcttaat
     1261 tcgaagccag acaggctcac cacccacatt gccatgataa agccgatggt gccccagata
     1321 cggattggcg ggaagtcagt aacgatatcc atcccggcat tttgcaggcg atagtaagag
     1381 atggtgttga ttaacccaag cgttggcata taagcaaacg agttaatcaa tatcacaagg
     1441 aacatcgcct ccggtgtcgt gacctgtgcc gccatgaaca gcgtgatagc gccaatggtg
     1501 tggcaaatgg catataccca tttcgcactt aaccatttgt cggccacaat ccccagcagc
     1561 gcaggcataa agaccgctgc gatacccagt gagctataaa ctgcgccaat agaagcaccg
     1621 tcaaacttca gggtaacaaa catataggag ccgagggtcg tcagccaact tccccacaga
     1681 cagaactgca gaaaagagag gattttcagc tgcagcttaa gattcatgtt aatttcctca
     1741 catcgtgatg cggatgagtg tttgaaaaag cacatttgac cgtgcgagat gatgggattc
     1801 tatcaacttc gcggactggt tttttgttac ctgtggcaaa taattgcaaa cattcccaat
     1861 ttgcaaaacg aaattgtgat gtggataaca tttttgcccc tgagcatcgt caggggcggt
     1921 taatggaatt atcggcggcg gtaggatttt tgcgcggtat tcactttata aagataacgg
     1981 cgagattccg cagagggatg gcgggtcgtc agcgtctgat aaacatcgcc cggcgtcatg
     2041 gtgttaataa tattggcagc ctgaatctta tcattcgaaa agactcgcag cacgctgcct
     2101 gcgccgccgt tataggcggt gatgacggca taacgccgcg atgttgggtt atcaattccg
     2161 ccgagataaa cattgttcag catcgccaga tacgcggtgc cggtatcaat attgctggca
     2221 ggatcaaaca agaaactgcg gctcggcgtg ccggatttcc cctgcgagcg gaacacatct
     2281 ttcccggcag tatgttgtac cacctgcatt aatcccagcg catcggaacg gctgaccgca
     2341 tacgggttaa aggaagattc ggtctgcata attgccagaa tcagcgactc atcaacgcca
     2401 tatttccgtg acgcctggcg gaccatgccg agatatttgt gcgcacgttt atcaaggtgg
     2461 ttcggtacca tgttaatggt gacgctgtag atgatacgca gcccgttact gcggctttgc
     2521 agacggtttt tcagcagata atccgcgaag ttgcttgcgc gaccttccca gcgaatcggc
     2581 tgcccggtgt tgtccaccac ctgaccgtaa aggaaaggtt ctttcgaaat cgtaatatca
     2641 tcaacgtcgg aatagagatc gaccgaactc ggatcgtcac ccatcagcaa cgttttgata
     2701 attgcccggc gcaaatgcgc ggcaggttct gtcccggcga tagtttcgat agtaatcgta
     2761 ccgtcatcga agttgatgtg gctgcgggtc tgatattgat cggtgtattt cacgtagtcc
     2821 ttaggaccgg cgatcaccac ctctttgaat ccccagatgt tctcaatatt gtgggcaaat
     2881 tgccccatca gaatatcaaa accgttggta tctttgaccc aggcttcgtt ataggtatcg
     2941 ccttttttgg tcgtcgaaca ggagatgagc aacggcgcaa tcaaagccag cgcgagatat
     3001 tttttcatca ttccgggtgc gtgttgtgtt tgtttttatg caagttgccg gaggcgtgct
     3061 ccggcactgt ttttattttt tatcttccgg cgtatagccc tcgatatgca cctctttacc
     3121 ctcgaacagg aagttgacca tctcctgctc aagcagcttg cggtgctcgg cattcatcat
     3181 gttgagtttc ttttcattaa tcagcatggt ttgcttgtgc tgccactgcg cccaggcttc
     3241 tttggagatc tcgttataga tgcgttttcc cagctcgccg gggtacagct gaaaatcctg
     3301 accttctgct tcacgttgca ggaaagtaca aaaaatcgtt ctgctcataa atcatcctct
     3361 ttatcgactc acgcgctaaa ccggcgcgcc agtgcgtaac tgctgtaaca aacgctccac
     3421 gggagccgcc aggccaactg acggcggttg cgctaagtta taccagagcg cattgccttc
     3481 atccatgcag ccggtgaatg acgacacggg aagccacata ggcacaatat ctaagtggaa
     3541 atggctgaag gtatgccgaa acgcggtcag ttgcgtcagg ttatcggcag caatctgccg
     3601 ttgcgccagc cactgccgca aactttcttc gtcggcaaac tgcgggaaac agtataaacc
     3661 gccccacaat ccgctcggcg gacgctgcgc cagcaatact tcatcttcgt gctgtaacag
     3721 caaaaagtag ccggtgcgct ccggcagcgt ctgtttcggt tttttgcccg gataaagcga
     3781 ccagctatta ttggcggcgg caatacatcc gttttgtagc ggacagagcg aacatttcgg
     3841 cttcgagcgc gtacaaatca tcgcgcccaa atccatcatc gcctgattaa accgttccac
     3901 gccgaccgcg ggcgtcacct gctcgctcaa actccataat ttattctcga cctctttttt
     3961 cccaggccag ccgcttacag catagcagcg cgccagcacg cgtttgacgt taccgtcgag
     4021 aatcggaaag tgcttaccca gagaaagcga gagaatcgcg cctgcggtgg aacgcccgac
     4081 gcccggtaac gccgcgactt cttcaaaggt ttccgggaat ttaccgccgt gtaaggtcgc
     4141 cacttgttgt gccgctttat gcagattgcg cgcgcgggcg taatagccaa gcccggtcca
     4201 caagtggaga acttcgtcga gcggcgcatt ggcgagatcg gtcaccgtcg ggaagcgcgc
     4261 cataaagcgt tcaaaatagg ggataacggt cgcaacctga gtttgttgca acatcacttc
     4321 tgagagccat actttgtagg gcgtcttgtc aatttgccag ggcagcgttt ttcgcccgta
     4381 tttatcgtac cagtccagaa cctgggctga aaattgcgac gcttgcatgg tcaccgaatt
     4441 cactgttgtt gggggcaaga ttgcagcaca gcgacggcag ggtgtaaacc ggaactttcc
     4501 gcagccacgg ccttatcatg cttgcatccg gcaactaact ttggataatg cccgttttca
     4561 gaacactttc acaagcgact aaatctttat gaaaaacgac gtcatttcac cggaatttga
     4621 tgaaaacggc cgcccactgc gccgtatccg tagttttgtg cgccgccagg ggcgactgac
     4681 caaaggccag gaacatgcgc tggaaaacta ctggccggtg atgggcgttg agttcagcga
     4741 agatatgctg gatttccccg cgctttttgg ccgtgaagcg ccggtgacgc ttgagattgg
     4801 ttttggcatg ggggcgtcgc tggtggcaat ggctaaagat cgccctgagc aggacttcct
     4861 cggcattgaa gtgcattcac cgggcgttgg tgcgtgcctg gcttctgcgc atgaagaagg
     4921 tttaaacaac ctgcgagtga tgtgtcacga tgcggttgaa gtgctgcata aaatgattcc
     4981 tgacaattca ttgcgcatgg tgcagctctt tttccctgac ccgtggcaca aagcgcgcca
     5041 taataaacgc cgtatcgtac aggtgccgtt tgccgaactg gtaaaaagca aactgcagct
     5101 ggggggcgta ttccatatgg cgaccgactg ggaaccttat gcggaacata tgcttgaagt
     5161 gatgtcttct attgacggtt ataaaaacct gtcagagagc aatgattacg taccgcgtcc
     5221 ggcatcacgt ccggtgacga aatttgaaca acgtggtcat cgtcttggtc acggagtatg
     5281 ggacttaatg ttcgagaggg tgaaataatg gcaaagaacc gtagccgtcg tctgcgtaaa
     5341 aaaatgcaca tcgacgaatt ccaggaatta ggattttcgg tggcatggcg attcccggaa
     5401 ggtacatcgg aagaacagat tgataaaacc gttgatgatt ttattaacga ggttatcgaa
     5461 ccgaacaaac tggcctttga cggcagcggt tatctggcct gggaaggtct gatctgcatg
     5521 caggaaatcg gcaaatgcac cgaagaacat caggcgattg tgcgtaagtg gctggaagag
     5581 cgcaaactgg atgaggtacg caccagcgaa cttttcgacg tttggtggga ctaagaaagc
     5641 atacgggcga tgacaaatgc aaaactgcct gatgcgctac gcttatcagg cctggaaaga
     5701 tgcacgatcg agtaggcggg ataaggtgtt tacgccgcat ccggcatgga aaacgcgtac
     5761 tttgttatca atctggggcc agcaaatgct ggcctgattt tttcttgagg gaagactatg
     5821 atgcgcaaaa tgctgctggc ggcagcactt tcagtgacgg caatgaccgc tcacgccgac
     5881 taccagtgca gcgtcacgcc gcgtgacgat gtgattgtca gcccgcaaac cgtgcaggtg
     5941 aagggcgaaa acggcaatct ggtgatcacg ccagacggca acgtgatgta taacggtaag
     6001 caatattccc tgaatgccgc ccagcgcgag caggcgaagg attatcaggc tgaactacgc
     6061 agcacgctgc cgtggattga tgaaggcgcg aaaagccgcg tcgaaaaagc ccgtattgcg
     6121 ctggataaaa ttatcgttca ggagatgggc gaaagcagca aaatgcgcag ccgtctgacc
     6181 aaacttgatg cgcaactgaa agagcagatg aaccgcatta tcgaaacgcg cagcgatggc
     6241 ctgacgtttc actataaagc cattgatcag gttcgcgccg aaggccagca attagtgaat
     6301 caggcaatgg gtggaatttt acaggacagc attaatgaaa tgggcgcgaa agcggtgctg
     6361 aaaagcggcg gtaacccatt acagaatgtg ctgggaagcc tgggggggct gcaatcctca
     6421 atccaaaccg agtggaaaaa gcaggaaaaa gatttccagc agtttggcaa agatgtttgt
     6481 agccgcgttg tgactctgga agatagccgc aaagccctgg tcgggaattt aaaataatcc
     6541 tctattttaa gacggcataa tactttttta tgccgtttaa ttcttcgttt tgttacctgc
     6601 ctctaacttt gtagagctcc aaaatatatt cacgttgtaa attgtttaac gtcaaatttc
     6661 ccatacagag ctaagggata atgcgtagcg ttcacgtaac tggaggaatg aaatggagtt
     6721 tttcaaaaag acggcacttg ccgcactggt tatgggtttt agtggtgcag cattggcatt
     6781 acccaatatc accattttag caaccggcgg gaccattgcc ggtggtggtg actccgcaac
     6841 caaatctaac tacacagcgg gtaaagttgg cgtagaaaat ctggttaatg cggtgccgca
     6901 actaaaagac attgcgaacg ttaaaggcga gcaggtagtg aatatcggct cccaggacat
     6961 gaacgataat gtctggctga cactggcgaa aaaaattaac accgactgcg ataaaaccga
     7021 cggcttcgtc attacccacg gtaccgacac gatggaagaa accgcttact tcctcgacct
     7081 gacggtgaaa tgcgacaaac cggtggtgat ggtcggcgca atgcgcccgt ccacgtccat
     7141 gagcgcagac ggtccattca acctgtataa cgcggtagtg accgcagctg ataaagcatc
     7201 cgctaatcgt ggcgtgctgg tggtgatgaa cgacaccgta ctggacggtc gcgatgtaac
     7261 caaaaccaac accaccgacg tagcgacctt caagtctgtt aactacggtc ctctgggata
     7321 cattcacaac ggtaagattg actaccaacg taccccggca cgtaagcaca ccagcgatac
     7381 gccattcgat gtctctaagc tgaatgagct gccgaaagtc ggcatcgttt ataactacgc
     7441 taacgcatcc gatcttccgg ctaaagcact ggtagatgcg ggctatgatg gcatcgttag
     7501 cgctggtgtg ggtaatggta acctgtataa atccgtgttc gacaccctgg caaccgccgc
     7561 gaaaaacggc actgcagtag tgcgttcttc ccgcgtaccg acgggtgcta ccactcagga
     7621 tgctgaagtg gatgatgcga aatacggctt cgtcgcctct ggcacgctga acccgcaaaa
     7681 agcgcgcgtc ctgctgcagc tggctctgac gcaaaccaaa gatccgcagc agatccagca
     7741 gatcttcaat cagtactaat cacctcgctc cggtatcgtg ccggggcttt ttcacttcag
     7801 acttacgtcc attgccaatt ttcattaccc taatgataat caccggaata aattatttcg
     7861 cgtgaggttt ttcgggtgaa aaagcaatgg attgttggca cggcactgct tatgttgatg
     7921 actggtaatg cctgggcaga tggcgaaccg ccaactgaaa atatcttaaa agatcaattc
     7981 aaaaagcagt atcacggcat tctcaagctt gatgctatca ccttaaaaaa tcttgatgct
     8041 aagggtaatc aggccacctg gtcagcggaa ggcgatgtct cttccagtga cgatctctat
     8101 acctgggtcg gtcagttggc agattacgaa ctgctcgaac agacctggac gaaagataaa
     8161 ccggtaaaat tctcggcgat gttaaccagt aaaggaacgc ccgcgtctgg ctggtcggtg
     8221 aacttttact cttttcagtc ggcagccagc gatcgtgggc gggtggtcga cgatatcaaa
     8281 acgaataata aatatctgat cgtgaatagc gaagatttca attatcgctt tagtcagctt
     8341 gaatctgcgt tgaataccca gaagaactcg attcctgcgc tggaaaagga agtgaaagcg
     8401 cttgataagc aaatggtggc ggcgcagaaa gcagcggatg catattgggg aaaagatgca
     8461 aacggtaagc aaatgacccg cgaagaagcc tttaaaaaaa ttcaccaaca gcgtgatgag
     8521 tttaataaac agaacgatag cgaggcgttc gcggttaaat atgacaaaga ggtttatcaa
     8581 ccggcgattg cggcatgtca taaacagagt gaagagtgtt atgaagtgcc gattcagcag
     8641 aaacgagatt tcgatatcaa cgaacaacgg cgacagactt ttctgcaatc acaaaaactc
     8701 agccgtaaat tgcaggatga ctgggtaacg ctcgaaaaag ggcaatatcc gttaacgatg
     8761 aaagtttcag aaataaacag taaaaaagtc gcgattttga tgaaaattga cgatatcaac
     8821 caagctaatg aacgctggaa aaaagatacc gaacaactgc ggcgcaatgg ggtgattaag
     8881 taagtttgat atagtgcacg atttgtagca ggatgcggcg ttgaccccgc atccggcaat
     8941 caacgtctga tgcgacgctt gcgcgtctta tcagacctac aaccgttgcc acatgtaggc
     9001 tggataaggc gttcacgccg catccggcaa tacaagttta ctcagccaga aaaagctcca
     9061 gcagcgaatt taaaaacagc ttcccatgtt ccgttatctg ccagtaatcc gcacattctg
     9121 tgagataacc ctgggcaatc gcctcgtcta actgtgggcg aatcacatct tcgcaaagcc
     9181 cggtatacgc actaaactct gcgcgtggcg cggcctccag caagcgaaag cggttcataa
     9241 agaactcaaa cggcttatct gcggcttcga catcacgctg gctttccaga taccttcctt
     9301 gcataaaacc acgaggatga cgcgttttag tggtacgcag aatgcgccca tccgggaagg
     9361 tgactttgcc gtgcgcgccg cagccaatac cgatgtagtc accaaatcgc cagtagttga
     9421 gattgtgctg gcactgataa ccgggtttgg cgtaagcgga agtttcatat tgctgataac
     9481 ccgctgcggt taataactga tgcccctgtt cgaaaatatc ccacagcgcg tcatcgtccg
     9541 gcagcaccgg tggtcgcgaa ccaaacagcg tattgggttc gatggtcagt tgataccagg
     9601 aaagatgcgg cggattcagt tcaatggcct ggcgtagatc gccaagcgcc tcttccagtg
     9661 attgatccgg tagtccatgc atcaaatcaa ggttaaagct acgtaaccct aaaccgctcg
     9721 ccagctttgc cgctcgtttc gcttcttgcg ggccatgaat gcgcccaagt cgtttcagct
     9781 tttcttcgct aaaactctgc acaccaatag agatgcggtt cacaccagca cgctgataat
     9841 cgacaaagcg atcggcttct accgtaccag ggttcgcttc catagtaatt tctgcatccg
     9901 ctgccagcgg caaacgcgca cgcacgccgt ccagcagcgt ttgcatcgcc gggccggaaa
     9961 gcaggctcgg cgtaccaccg ccaataaaga ttgtctttac ttcacggccc tgagcgtaag
    10021 ccacatcatt gtccagatcg caaagcagat gctgaacata atcgtcgtgc ggcacttctc
    10081 ctttcaacgc gtgagagttg aaatcgcagt acgggcattt ctgcacgcac cacgggatgt
    10141 gaatgtagag actcagcggc ggtaatttaa ccattacgta aagcgtccag cagcagtttc
    10201 aacgcctgac cacggtggga aatggcgctc ttttcttcgc gggtcagttc ggcggcggtt
    10261 ttcccttcgg aaggtacgaa gaagattgga tcataaccaa agccaccagt gcccgctggt
    10321 tcgcgagtaa tcacgcccgg ccagctgccg tggcatacca gcggagtcgg atcttccgcg
    10381 tgacgcagat ataccagcac gcagtggaaa cgtgcctgac gttggtcgtc cggtacgtct
    10441 ttcagtgttt ccaacagttt ttgcagattc ttttgatcgg tcgcgtcttc accggaataa
    10501 cgcgcggagt aaatacccgg cgcgccaccc agcgcatcta ccgccagacc agagtcgtcg
    10561 gcaattgccg gtaaaccggt cacttttgcc gcatggcgcg ctttcagaat cgcgttttcg
    10621 ataaaggtta ggccggtttc ttcagcggaa tcaacgccga ggtctgtttg tgccacgata
    10681 tcaagaccaa agtcgctaag cagcgacgcc agctcacgca ctttaccggc attgccggtt
    10741 gcgaggacaa ctttttgcat aggataccta attaattaac gccgcgattt ctggcgggat
    10801 ttgttgcgga ttaatgattt taatttgttt gtggcggcca agttcgcctt tttcaatcac
    10861 cacctggctt ttggcaaccc ggaattgctt accgagaaac ttcaccagat gactgttggc
    10921 ctggccgtca actggcggcg cggtaatggc gactttaact tcgtcgccat gtaaaccgac
    10981 aatagaatca cggctggctt tcggctgaat atagagccgt aaaaccagac cgtcatcatt
    11041 aactgttacg gcattcataa cgccatccac atccccggca gcaggatgtt tccggttgcc
    11101 tgtaatactt ctgcgacacc catattgatg acatacagca gcagaacgag gatcatcggc
    11161 gagaaatcaa tcccacccat tgccggtagc aagcggcgaa tcgggcgcag cagcggatcg
    11221 gccagctgaa tcagcacgta ttcaatcggg ctacgaccct ggcttaccca gctcataatc
    11281 gccatcacca gcaggaccca gaaaatcagc aagccgatgg ttttcagcag aatcagtaaa
    11341 ccggcaatcc agatgattgg caggaaggtc accactttaa acagcacaat ggctttgata
    11401 aaactgagaa tataggcaac cagcagcgag gcgctgtcaa tgggacccat tgccggaata
    11461 acgcggcgca gtggcccgat aattggctgc gttaccttca ctacaaactg tgagaagggg
    11521 ttgtaaaaat cacaatgagc ccactgcatc cagatgcgta ataacagcac catggtatac
    11581 agctcaatga ccgttgaaag caggaaagtc aacgtattca tggcgttcct ttaattcctt
    11641 attttttaga gtaatcacgc gcaccaaaaa ttgcagtgcc gatacgaacc atcgtgctac
    11701 ctgccgcaat ggcggcttcc atatcgtccg acattcccag agagagcgtg tcgatatgcg
    11761 ggtagcgcgt tttcagtccg gcaaatgcta cagccatttg gcgtgcaact tcaaactgcc
    11821 ttacatattc tgactcaggc gcagggattg ccatcagccc gcgcagacgt aaacgcggta
    11881 gttcagcgac cgccgctgcc agctcgtcca gttctgccag ttgaatcccg gacttactgt
    11941 tttcatcact aatattaatt tgaatcagta cgttaagagg gggaagttct gccgggcgct
    12001 gatcgttgag gcgggtagca atgcgcaaac ggtcgatggt atgacaccag tcgaaatgct
    12061 ctgccaccag gcggctttta ttagactgca acgggccaat aaaatgccat tctaatcctg
    12121 ttacgcccag ttcctgaaag tggcgaattt tatctacccc ttcctgaacg tagttttcac
    12181 caaattgacg ctgcccggca tcaatggctt ctgcgatggc gctcgcaggt tttgttttac
    12241 tgactgcaag cagcgtaatt tcttctggag aacggccgca acgcgttgca gccgctaaga
    12301 ttttgtcccg gacctgtgcc aggttatgcg caatatcgtt cattttccga ggatcttagt
    12361 atgaatatgg aagaaattgt ggcccttagt gtaaagcata acgtctcgga tctacacctg
    12421 tgcagcgcct ggcccgcacg atggcgcatt cgcgggctaa tggaagctgc gccgtttgat
    12481 gcgctggacg tcgaagagct actgcgggag tggctggatg acgatcagcg ggcaatattg
    12541 ctggaaaatg gccagctgga ttttgccgtg tcgctggcgg aaaaccagcg attgcgtggc
    12601 agcgcattcg cgcaacggca tggcatttcg ctggcgttac ggctgttacc ttcgcactgc
    12661 ccgcagctcg aacagcttgg cgcaccaacg gtattgccgg aattactcaa gagcgagaat
    12721 ggcctgattc tggtgacggg ggcgacgggg agcggcaaat ctaccacgct ggcggcgatg
    12781 gttggctatc tcaatcaaca tgccgatgcg catattctga cgctggaaga tcctgttgaa
    12841 tatatctatg ccagccagcg atgtttgatc cagcagcggg aaattggttt gcactgtatg
    12901 acgttcgcat cgggattgcg ggccgcattg cgggaagatc ctgatgtgat tttgctcgga
    12961 gagctgcgtg acagcgagac aatccgtctg gcactgacgg cggcagaaac cgggcatttg
    13021 gtgctagcaa cattacatac gcgtggtgcc gcgcaggcag ttgagcgact ggtggattca
    13081 tttccggcgc aggaaaaaga tcccgtacgt aatcaactgg caggtagttt acgggccgtg
    13141 ttgtcacaaa agctggaagt ggataaacag gaaggacgcg tggcgctgtt tgaattattg
    13201 attaacactc ccgcggtggg gaatttgatt cgcgaaggga aaacccacca gttaccgcat
    13261 gttattcaaa ccgggcagca ggtggggatg ataacgtttc agcagagtta tcagcagcgg
    13321 gtgggggaag ggcgtttgtg acgttgccat gcccgatgcg caagtttata gggcctataa
    13381 aggcaataaa tgtctgatgc gacgctaacg cgtcttatca gacctacagc cgctgccaga
    13441 tgtgtgctgg ataaggcgtt cacgccgcat ccggcaagat ggcggtaacg actatccgcc
    13501 aggcttttag atcgccttaa tatccctgct cgaaatagct ttcgagaata ataaccgcag
    13561 aggcagagtc gactttgcct ttgttgagcg cccgatagcc gccctgttca aacagaccgg
    13621 aacgggcttc cacggtgcta agacgttcgt catggagctt tacttcaaca ccgaaacgac
    13681 catgaatacg gttggcaaat ttacgcgctc tggcagtcaa tggttgctcg gtgccgtcca
    13741 tattcagcgg caaaccgacg atgatttcgt ccggctgcca ctctttcagt aaacgttcga
    13801 tgaggttcca gtccggcgta ccgtcctgtg ctttaattgc aggcaaaggg cgagcagtgc
    13861 cggtaatgcg ttggccgacc gctacgccaa tgcttttggt gccgaagtcg aaggcgagta
    13921 aggttccact catcaggcgt gccctgccac accaggcatg gtgagaatat ccacaccaat
    13981 cagttttgcc gcctcgcgcc agcggtcggc aatcggcgtt ttgaacagaa tattcagatc
    14041 cgccgaggcc gttagccacg cgttatcgag aatttcttgt tccagttgac ctttttccca
    14101 ggaggcatag cccagagcca ccaatacgtc agacggttgt ttatcggtgc cgagcgtttc
    14161 cagcacatcg cgggaagtgg tcatcaccgt gttgtctgaa atgcgaatgc tggaagcaaa
    14221 attggagggc ggagtatgca aaataaaccc gcgatcttca gccagtgggc cgccgagcat
    14281 aaccggttta tccagacgga ttgattcatc acgcggctcc ggcgtgatct tcagcttttc
    14341 cagaatccct tcaattttga gattttccag cggcttgttg acgatgatcc ccattgcacc
    14401 attggtatta tgttcgcaaa tgtagaccac ggaacgacgg aaaatcggat cctggagagc
    14461 aggcatggca ataagaaagt gatgctgtaa attcattgtc agaggttctg tttcctggtt
    14521 caaaaaagca acagcgccca gtatgcgtgg aaagaagggc gctgtcactc agagtctcaa
    14581 cgagatcctt ctcgctaagg tgggttactg ctgctgtaaa cgtgcttcga tggcatccat
    14641 taacattccg gtgatcgaca ccggaaactc tgcttcaatc tcacgaatac aggttgggct
    14701 ggtgacgtta atttcagtca gacggtcgcc gatgatatcc agaccaacaa aaatcagccc
    14761 tttttctttc agcgtcggcc cgatctgacg ggcgattttc cagtcacttt ccgtcagcgg
    14821 ccgaggttca ccgcgaccac cggcagccag attgccacgg gtttcgcccc cctgcggaat
    14881 acgcgccagg cagtacggta ccggctcgcc atccaccacc agcacgcgtt tgtcgccatc
    14941 tttaatggct ggcaggtaat tttgcgccat gcagtagcga gtgccatgct cagtcagggt
    15001 ttcggcaatc acgccgaggt ttggatcgcc ttctttcacg cggaaaatcg acgcgccgcc
    15061 cataccgtcc agcggcttaa gaatgatgtc gctgtgtttc tcccagaacg cttttagctg
    15121 cgctttattg cgcgtaacca gcgtttctgg cgttaagtca gagaaccagg cggtaaacag
    15181 tttctcgtta cagtcgcgca ggctctgcgg cttgttaacg atcagcgtcc ctttctcttc
    15241 ggcacgttcc agaatatagg tcgcgtagat aaactcggta tcaaacggcg ggtctttacg
    15301 catcaggagc acatcgagat cggccagcgg cagatcctgt tcaccgacga acgaaaacca
    15361 ctcttcgtag ttctgcttca cgttcagcgt gcgggtatgg gcgcgagctt cgccattgat
    15421 cagatacaga tcgcccatct ccatatagtg aagttcgtaa ccacgacgct gtgcttccag
    15481 caacatagcg aaactggaat ctttcttgat gttgatgttt gcgatggggt ccatcacgat
    15541 gccgagcttg atcattattc ttctccgtta gcccaaatcg ccaaatcgta cttgtagcgc
    15601 ggtaatggcg gtgagcgcag ttgtctctgt acgcaaaacg cgaggtccca acaggatatc
    15661 agtaaattga tagcgggcag tcatggcaat ttcatctgcc gataaaccgc cttccgggcc
    15721 aatcagcagg cggacgcgtt caaccggtaa cggcaacgta ttgatgctgt tactggcgcg
    15781 cgggtgaaga ttcagtttca gtccttcatc ctgctctgca caccaggctt ccagatccat
    15841 cgctggacgg atttccggca cccggttacg accacactgc tcacaggcag caattgcaat
    15901 cttctgccac tgctggagct tcttgttcag acgttcacta tccagtttaa cgccgcagcg
    15961 ctcagaaaaa agtggcgtaa tgaggcttac accgagttcg atcgatttct ggatcgtaaa
    16021 ttccattttt tcaccacgcg acatcacctg accgaggtga atatgcagcg gagattcgcg
    16081 atcgtcgatc ttgccttcca gcaccttcac ttccacgctt tttttgctgg cgctggtaat
    16141 ttcggcgtca aagacctggt tgctaccgtc aaacaattgc aacgcctgcc ccggccccat
    16201 gcgcagtacg cgcccgatat ggttggcggc atcttcgcaa agcgcgatgt gagaatggct
    16261 ggtcagtggt tcaggatgat aaatgcgggg gatacgcata gttaaaaatc cgcgtcgtct
    16321 ccccacgcgg ttgtacgcgt ggggtagggg ttaacaaaaa gagtcccgct agtgtaggtt
    16381 agctctttcg cgcctggcaa gcgcgttgca catacgggtt atgattgcct tgcaccttcg
    16441 cgatgcgttc atcgcgctcg cactcccagt cggtaaccgg atacatcttg ttccatgcgt
    16501 tgaacagctg cgtttgctgg cgagagagtg tcaggttgta ttggtcgcgc atatagaagt
    16561 aggtgcgcgc aatggcaccg cgtgcacgcg ctggtggttc ggcagctttt tctttgaaat
    16621 cgaccttcat ggcgcattga ccgtactggc cttcgccgcc attccactgg ctgtacataa
    16681 agttgccgcg atcgccattc acctcaccga ctgacggctg caggttatgc atatcgcttt
    16741 ccatcttgcg atagaccgga tctttagcgc agtttttacg tccaccgtcc tgccagcact
    16801 ggcgctggtg accgaactgc caggcgggaa cgacgtgttc ccactctacg cggctggctc
    16861 ggttttcatt tttgcgcacc tgatagccgc acgattgcag atcaacaacg ccttttttgc
    16921 cctgccagtt aattttacat ccgcaataaa acgtaccggg cgcgtcagcg tggactttta
    16981 ccgccgcggc tttcgcctga gaaaaactat tgataccttc ggccaacgcc gggccggaaa
    17041 atgctgcgct cagtaccacc gcagcaatag acaaataacg gtacatcact tactccgtgt
    17101 taaaacgagc cagcaacgta gcgaaagttg ttttggtatg caatcagcca gatcaggaaa
    17161 gttcctgata gttcagatgg ttattttgcg accagttgtt cgccgcagtg aacacagcga
    17221 tagacggctt cgccacgaac tacgcgatta tggcggcgta cggtaagctg atgctcctgg
    17281 cacttgcagc ggtaggggaa ggtgttgcga cgcacggatt gcagttcgaa ctgatgcgta
    17341 cgacgggcgg gaacacccag cacgttttcc atcatccact tccactcttt gccatgtggt
    17401 gctacgcgcc cgaaatgttt ccataccagc aaatgtgcca gttcgtgcgg caccacttct
    17461 tcaataaagg cttcactgtt ttccaacagc aaaacgggat tgaggcggat ttcatagctt
    17521 tccagccagg ctgttccggc ggaggtgccg cgctgggtat aagagagttt tggctccggg
    17581 tagttacgcc ccaatttcag gttagcctgg gcgagttttt cccgcaggcg acgcataacg
    17641 gcctgttgga tggcgatagg gagacgggat gttttcatag cggcagagga tagagcgaag
    17701 aaaagatgac tgcaagaggt ggcttcctcc gcgatgggag gaagcttggg gagattaatc
    17761 gtgagcgcct atttcgcgca gtttacgacc tttcatcaga ttacgttcaa tatgttccag
    17821 cgaaacgtgt ttggtttccg gtaccagcca caatgtcagc aggataaaca gtacgttcag
    17881 agccgcatac acccagaagg tgttggcgtt acccagtgtg ttgagcatgg tcaggaacgt
    17941 tgcgccaacg atcatgttgg caatccagtt ggtggcggta gagcaggtga tgccaaaatc
    18001 gcggcctttc agcggctgaa tttcggagca cagtacccaa atcagcggac cggcactcat
    18061 ggcaaaaccg acaataaaca tcagcagcat ggcgatggcg aaatactgcg ctgacggaga
    18121 gtgaataccg atatgcatca ttgtaccgag tacgcccatg ccagcagcca tcaccaggaa
    18181 gcccagcgtt agcgttggtt tacgtcccca gcggtcaaca aggccgattg cgataaaggt
    18241 ggcaagtacg ttggtcaggc cgacaatcac tgtcccccac atttgctcgg tagtgttggt
    18301 ataacccgcc agttcgaaga ttttcggcgc gtaatacatg atgacgttca tcccggtgaa
    18361 ttgctgcatt acctgtaaca gtacgccaag gaacaccgcg cggcggaagt tgctattctc
    18421 tttaaacagc gcccagccac tctgtttaac ctgcaaactt tcacggattt catccagttc
    18481 gcgtttcgct tccgcgctgg tgtcacgcag gcgtagcagc acgcgttcgg catcaacaaa
    18541 acggcgtttg gcggcaaacc aacgtgggct gtctggcagg aagaagacac caatcagcag
    18601 caaaattgcc gggatgataa tcacacccag catccagcgc catgcaccgg tgtagctgaa
    18661 ggcggtatca gaaagataag caccgaggat cccgatagtg atcatcaact gatacatcga
    18721 gatcatactg ccacgaattt tttccggcgc aatttcagag aggtacagcg gtgcggtata
    18781 agaggccaca cccaccgcca gccccagtag aacgcgggaa agaatcagta cttcaacgtt
    18841 tggcgcagcc gcagagaaca gcgaaccggc aacaaacaaa attgcgccga tcatcaggct
    18901 ctttttgcgc ccgagtttaa aggagagcca gccgctgccc accgcaccga ctgccgcacc
    18961 gaacatcatg gagcttacga cccattcttg cgtgtgcgaa gtaatctgga attcatctgc
    19021 aataaacggc agtgcgccag caattacacc gatatccagg ccaaagagta atcccgccag
    19081 agcggcaagg aagcagacga aaaacgtcat tgccttgttt gaccgcccct gttttttagc
    19141 gtcaggcatg atgccctcca atatggttat tttttattgt gaattaagat aggtgagtac
    19201 gacgtaaaaa gatgtgaagc aaatcacatc agtgtaatcg cttacactaa catttatctt
    19261 agttatggtt taagtgcatg aaaataattg agttatatca tcatagatta aacgctgtta
    19321 tctgcaatta agactttact gaaaagaaat gtaacaactg tgaaaactga ataataatat
    19381 gaaaatatta caaatatttg gctggtgtta ttggtgtaat cggtttcagt agtgatgata
    19441 atttgcgata aaacgtgttg aggaagaatg atgttattgt gcgggcagct ttttgccgga
    19501 tgcggcgtga atgcctatcc accgcggtga ggtaaaagaa aaaggccagc gcgaggctgg
    19561 cctttgaaag caggtgaaga aagattactt cagaccggca gcatcgcgca gcagctgcgc
    19621 tttgtcggtt ttttcccacg ggaaatgttc acgaccaaag tgaccgtatg ctgcggtttc
    19681 tttgtagatc gggtgcagca gatccagcat ctgaatcaga ccgtatgggc gcaggtcgaa
    19741 gaactcacgt accagcagag tcagttgttc agaaggcact ttctcagtac cgaaagtttc
    19801 taccatgatg gaggtcggtt cagccacgcc gattgcgtag gaaacctgaa tttcacaacg
    19861 atcggccagg ccagcagcaa cgatgttttt cgcgacataa cgtgctgcgt aggctgcgga
    19921 acggtccact tttgatggat ctttaccaga gaatgctccg ccaccgtgac gtgccatgcc
    19981 gccgtaggta tcaacgataa ttttacgacc agtcagaccg cagtcaccca tcgggccacc
    20041 gataacaaaa cgaccggtcg ggttgatgaa gaatgtggtg gcagaagtca gccattcagc
    20101 gggcagaatt ggcttgatga tctcttccat taccgcttct tgcagcgatt tctggtcgat
    20161 ctcttcagag tgctgagtgg aaagcacgac agcatcaata ccaacgattt tgccgtcgtc
    20221 atactggaaa gtcacctggc ttttcgcgtc cgggcgcagc cacggcagag tgccgttttt
    20281 acgcacttca gcctgacgct gtaccagacg gtgtgcatag gtgataggtg ctggcatcag
    20341 cacgtcggtt tcattagttg cgtagccaaa catcagaccc tggtcacccg cgccctgttc
    20401 cagcggatcg gcacggtcaa cgccctggtt gatgtcagga gactgtttgc cgatagcgct
    20461 cagaaccgca caggagttag cgtcaaagcc catgtcggaa tgcacatagc caatttcgcg
    20521 aacggtgtta cgagtgatct cttcgatgtc tacccaggcg ctggtggtga tttcgccgcc
    20581 aactaaaacc atgccggttt ttacgtaggt ttcgcaagca acgcgtgctt tcggatcctg
    20641 ttcgaggatc gcgtctaaaa cggcatcaga gatttggtca gcaattttgt caggatgccc
    20701 ttcagagacg gactcggacg taaaaaggtg ttttgccata tttaatatca cctaaagaga
    20761 atttggttag ctcaaactgt tgtgtggatt ttctgtggta gcggatccta ccacgactct
    20821 gcaggttaaa aacactggca gtctgagtgt taatcggtat ggatggatta acatctagat
    20881 ggctatttta ggtcaattct tcacccgatt tccacttttt tttgaatcgt gtctcattct
    20941 gttaaaaacg tggctggaaa ttttttctga caatgccggc attctgcgta tttatatttt
    21001 gcaattttct gccattgtgg ggtataaaac gcggcgcgcg gcttaaataa aaagcacacg
    21061 acgtttcttt cgtgttgcca cttccagccg ggttgaaatc agagttttgg cttgtgggtt
    21121 cgtcttaaca ggcggccgtg gaggtgatac gaaataatga accgtagtct gctgcttaac
    21181 ctgtctcacc gttctggtga agattcgttc cccgcactct gcatctctgc tttgcatacc
    21241 tgccgatgtt atacccatct cggcgcttct caggattcaa gagctggtta cagttactga
    21301 ggactgaaca agggcgctct tgtaaaaaca agagttttct cgtggtttcg ccgaactgtc
    21361 acacttacgt tcggttatgt gcttaataat gttatgaaaa agaaaccggt tgcgcagttg
    21421 gagcgtcagc attcactgct ggaaaatcca tgtgcttatg ggttgttatc gcagttccag
    21481 gctgcgatag tcgttaactg ttttacactt aataaaataa tttgaggttc gctatgtctg
    21541 acgacatgtc tatgggtttg ccttcgtcag cgggcgaaca cggtgtacta cgctccatgc
    21601 aggaggttgc aatgagctcc caggaagcca gcaagatgct gcgtacttac aatattgcct
    21661 ggtggggcaa taactactat gacgttaacg agctgggcca catcagcgtg tgcccggacc
    21721 cggacgtccc ggaagctcgc gtcgatctcg cgcagttagt gaaaactcgt gaagcacagg
    21781 gtcagcgtct gcctgcactg ttctgtttcc cacagatcct gcagcaccgt ttgcgttcca
    21841 ttaacgccgc gttcaaacgt gcgagggaat cctacggcta taacggcgat tacttccttg
    21901 tttatccgat caaagttaac cagcaccgcc gcgtgattga gtccctgatt cattcgggcg
    21961 aaccgctggg tctggaagcc ggttccaaag ccgagttgat ggcagtgctg gcacatgctg
    22021 gcatgacccg tagcgtcatc gtctgcaacg gttataaaga ccgcgaatat atccgcctgg
    22081 cattaattgg cgagaagatg gggcacaagg tctatctggt cattgagaag atgtcagaaa
    22141 tcgccattgt gctggatgaa gcagaacgtc tgaatgtcgt tcctcgtctg ggcgtgcgtg
    22201 cacgtctggc ttcgcagggc tcgggtaaat ggcagtcttc cggcggggaa aaatcgaagt
    22261 tcggcctggc tgcgactcag gtactgcaac tggttgaaac gctgcgtgaa gctgggcgtc
    22321 tcgacagcct gcaactactg cacttccacc tcggttcgca gatggcgaat attcgcgata
    22381 tcgccacggg cgttcgtgaa tccgcgcgtt tctatgtgga actgcacaag ctgggcgtca
    22441 atattcagtg cttcgacgtc ggcggcggtc tgggcgtgga ctatgaaggc acccgttcgc
    22501 agtctgactg ctccgtaaac tacggcctca atgaatatgc caacaacatc atctgggcga
    22561 ttggtgatgc gtgtgaagaa aacggtctgc cgcatccgac ggtaatcacc gaatcgggtc
    22621 gtgcggtgac tgcgcatcac accgtgctgg tgtctaatat catcggcgtg gaacgtaacg
    22681 aatacacggt gccgaccgcg cctgcagaag atgcgccgcg cgcgctgcaa agcatgtggg
    22741 aaacctggca ggagatgcac gaaccgggaa ctcgccgttc tctgcgtgaa tggttacacg
    22801 acagtcagat ggatctgcac gacattcata tcggctactc ttccggcacc tttagcctgc
    22861 aagaacgtgc atgggcagaa caactctatc tgagcatgtg ccatgaagtg cagaagcaac
    22921 tggatccgca aaaccgtgcg catcgtccga taatcgacga actgcaggaa cgtatggcgg
    22981 acaaaatgta cgtcaatttc tcgctgttcc agtcaatgcc ggacgcatgg gggatcgacc
    23041 agttgttccc ggttctgccg ctggaagggc tggatcaagt gccggaacgt cgcgctgtgc
    23101 tgctggatat tacctgtgac tctgacggtg ctatcgacca ctatattgat ggtgatggta
    23161 ttgccacgac aatgccaatg ccggagtacg atccagagaa tccgccgatg ctcggtttct
    23221 ttatggtcgg cgcatatcag gagatcctcg gcaacatgca caacctgttc ggtgataccg
    23281 aagcggttga cgtgttcgtc ttccctgacg gtagtgtaga agtggaactg tctgacgaag
    23341 gcgataccgt tgcggatatg ctgcaatatg tgcagctcga tccgaaaacg ctgttaactc
    23401 agttccgcga tcaagtgaag aaaaccgatc ttgatgctga actgcaacaa cagttccttg
    23461 aagagttcga ggcaggtttg tacggttata cttatctgga agatgagtaa gtccgtatta
    23521 cttgaatccg cttaatttag cggtgataat ccgccacaat ttattgtgac aaatccaacc
    23581 cttcctcgtc gggcctaacg acgcggaagg gtttttttat atcgactttg taataggagt
    23641 ccatccatga gcaccttagg tcatcaatac gataactcac tggtttccaa cgcctttggt
    23701 tttttacgcc tgccgatgaa cttccagccg tatgacagcg atgctgactg ggtgattact
    23761 ggtgtgccgt tcgatatggc cacttctggt cgtgcggggg gacgccacgg tccggcagcg
    23821 atccgtcagg tttcgacgaa tcttgcctgg gaacacaatc gcttcccgtg gaatttcgac
    23881 atgcgtgagc gcctgaacgt cgtggactgc ggcgatctgg tatatgcctt tggcgatgcc
    23941 cgtgagatga gcgaaaaact gcaggcacac gccgagaagc tgctggctgc cggtaagcgt
    24001 atgctctctt tcggtggtga tcactttgtt acgctgccgc tgctgcgtgc tcatgcgaag
    24061 catttcggca aaatggcgct ggtacacttt gacgcccaca ccgataccta cgcgaacggt
    24121 tgtgaatttg accacggcac catgttctat accgcgccga aagaaggtct gatcgacccg
    24181 aatcattccg tgcagattgg tattcgtacc gagtttgata aagacaacgg ttttaccgtg
    24241 ctggacgcct gccaggtgaa cgatcgcagc gtggatgacg ttatcgccca agtgaaacag
    24301 attgtgggtg atatgccggt ttacctgacc tttgatatcg actgcctaga tcctgctttc
    24361 gcgccgggaa ccggtacgcc agtgattggc ggcctgacct ccgatcgcgc cattaaactg
    24421 gtacgcggcc tgaaagatct caacattgtt gggatggacg tagtggaagt ggctccggca
    24481 tacgatcagt cggaaatcac cgctctggct gcggcgacgc tggcgctgga gatgctgtat
    24541 attcaggcgg cgaaaaaggg cgagtaagca ccagatgcga tgcgcacggg taaaacgtgc
    24601 cattaatgtc ggatgcggcg tgaacgcctt atccgaccta cgttcggcac ccgtaggccg
    24661 gataagatgc gccagcatcg catccggcaa tgcgcacaag gtaacaaatg tgccattaat
    24721 gtcagatgcg gcgtgaacgc cttatctgac ctacgttcga caccaccagg ctttacttaa
    24781 tcccatccgc gctcatgcga tcgcgaatat gctgggcgcg ttcggcggat gccggatggt
    24841 cgtcaaacat tgagctttgg cggccttctt ccagtttcgc cagtttttca aagctggtgg
    24901 caagacctgc cgggctgatg ccgcgttggc gcagaagatc gtaagaataa tcatcggctt
    24961 ctgcttcctg gcgctgggag aattgcgaat tgactaattt ctcgcccaga tcaccaagtt
    25021 gtgattgaga taaactgccg acaatcccgc ccgcagaggc cgcagctact cgcacggcat
    25081 ttgtaccaag cgccacctgc atccctttct tcacatggcc taacgccacg tgccccatct
    25141 cgtgaccgat caccgcttcg acttcgttat ccgtcatcat atccatcagc ccgctataga
    25201 cgcggataca gccgttagcc attgcaaagg cgttcacatc cttcgccata tacactttgt
    25261 aattcaccgg ctgaccgttg atattgttgc ctagcgcatt ggcaatagtt gtcagacgtt
    25321 tagcgtattc gctattggct ggcgcaatcg tcgccttgct gtccatctcc tgacatgcct
    25381 gatcgctcag ggttttcacc tgcgcatcac tcaaactgta agcctgaaaa gcttccgctc
    25441 ctgatgagag cagtccgttg gagtccatat tctggcaacc agtcagtacc gttgccacgc
    25501 tcattgctac caataaggcg cgaattttca tgttttctct tccgcacaag gtcaggatta
    25561 ttctaaaaat gcgccgtttg caggtgaatc gacgctcagt ctcagtataa ggaaaagcgc
    25621 agcggacggg cgagtagatt gcgcaacatg cgagcatgat ccagagattt ctgaagcggc
    25681 aaaaggatgt tccatgtaca tgacgcgcgg cttgcggtaa attgttggca aattttccgg
    25741 cgtagcccaa aacgcgctgt cgttaagggc gtgcccttca tcatccgatc tggagtcaaa
    25801 atgtcctcac gtaaagagct tgccaatgct attcgtgcgc tgagcatgga cgcagtacag
    25861 aaagccaaat ccggtcaccc gggtgcccct atgggtatgg ctgacattgc cgaagtcctg
    25921 tggcgtgatt tcctgaaaca caacccgcag aatccgtcct gggctgaccg tgaccgcttc
    25981 gtgctgtcca acggccacgg ctccatgctg atctacagcc tgctgcacct caccggttac
    26041 gatctgccga tggaagaact gaaaaacttc cgtcagctgc actctaaaac tccgggccac
    26101 ccggaagtgg gttacaccgc tggtgtggaa accaccaccg gtccgctggg tcagggtatt
    26161 gccaacgcag tcggtatggc gattgcagaa aaaacgctgg cggcgcagtt taaccgtccg
    26221 ggccacgaca ttgtcgacca ctacacctac gccttcatgg gcgacggctg catgatggaa
    26281 ggcatctccc acgaagtttg ctctctggcg ggtacgctga agctgggtaa actgattgcg
    26341 ttctacgatg acaacggtat ctctattgat ggtcacgttg aaggctggtt caccgacgac
    26401 accgcaatgc gtttcgaagc ttacggctgg cacgttattc gcgacatcga cggtcatgac
    26461 gcggcatcca tcaaacgcgc agtagaagaa gcgcgcgcag tgactgacaa accgtccctg
    26521 ctgatgtgca aaaccatcat cggtttcggt tccccgaaca aagccggtac tcacgactcc
    26581 cacggtgcgc ctctgggcga cgctgaaatt gccctgaccc gcgaacagct gggctggaaa
    26641 tatgcaccgt tcgaaatccc gtctgaaatc tatgctcagt gggatgcgaa agaagcaggc
    26701 caggcgaaag aatccgcatg gaacgagaaa ttcgctgctt acgcgaaagc ttatccgcag
    26761 gaagccgctg aatttacccg ccgtatgaaa ggcgaaatgc cgtctgactt cgacgcgaaa
    26821 gcaaaagagt tcattgctaa actgcaggct aacccggcga aaatcgccag ccgtaaagcg
    26881 tctcagaatg ctatcgaagc tttcggtccg ctgttgccgg aattcctcgg cggttctgct
    26941 gacctggcac cgtctaacct gaccctgtgg tctggttcta aagcaatcaa cgaagatgct
    27001 gcgggtaact acatccacta cggtgttcgc gagttcggta tgaccgcgat tgctaacggt
    27061 atctccctgc acggtggttt cctgccgtac acctccacct tcctgatgtt cgtggaatac
    27121 gcacgtaacg ccgtacgtat ggctgcgctg atgaaacagc gtcaggtgat ggtttacacc
    27181 cacgactcca tcggtctggg cgaagatggc ccgactcacc agccggtaga gcaggtcgct
    27241 tctctgcgcg taaccccgaa catgtctaca tggcgtccgt gtgaccaggt tgaatccgcg
    27301 gtcgcgtgga aatacggtgt tgagcgtcag gacggcccga ccgcactgat cctctcccgt
    27361 cagaacctgg cgcagcagga acgaactgaa gagcaactgg caaacatcgc gcgcggtggt
    27421 tatgtgctga aagactgcgc cggtcagccg gaactgattt tcatcgctac cggttcagaa
    27481 gttgaactgg ctgttgctgc ctacgaaaaa ctgactgccg aaggcgtgaa agcgcgcgtg
    27541 gtgtccatgc cgtctaccga cgcatttgac aagcaggatg ctgcttaccg tgaatccgta
    27601 ctgccgaaag cggttactgc acgcgttgcg gtagaagcgg gtattgctga ctactggtac
    27661 aagtatgttg gcctgaatgg cgctatcatc ggtatgacca ccttcggtga gtcagctccg
    27721 gcagagttgc tgttcgaaga gttcggcttc accgtcgaca acgtcgttgc gaaagcaaaa
    27781 gaactgctgt aattagcatt tcgggtaaaa aggtcgcttc ggcgaccttt tttattacct
    27841 tgatatgtcc gtttgcggac aagcaataga taaagcgtgt tgcagatcac aaatatttat
    27901 atgcaataaa tatcaattat gtaatatgca tcacgatatg cgtattgaca tttgttgtta
    27961 tatctataac tcaatgttat ataagaaatt aataattcac tgttttcaaa acaccggttt
    28021 ccctgctcaa ttgctttcat taaaccgcac gagtatttta tttttaccgc cggacggtac
    28081 cctaaaaata aaataaggat aatttatgcg gcttagtgac tattttccag aatcatcaat
    28141 ctcagttata cattcagcaa aagattggca ggaagctatc gatttctcga tggtatcatt
    28201 gctggataaa aactatatca gcgagaatta cattcaggca attaaagatt ccaccattaa
    28261 caatggccct tattatattc tcgcaccagg cgtggcaatg cctcatgcgc gaccggaatg
    28321 tggggcgctt aaaaccggga tgtctttgac attacttgaa caaggtgttt attttccggg
    28381 gaatgacgaa ccaattaaat tactcatcgg actctctgct gccgatgccg attcgcacat
    28441 tggcgctatt caggcgttaa gtgaattact gtgcgaagaa gaaatactcg aacaactctt
    28501 aacagcatca tcagaaaaac aattagcgga cattatcagc cacagataat tactctctcc
    28561 tctacaggat aatattatgg aaaacaagtc tgctcgtgca aaggtccagg cttttggggg
    28621 ctttttgact gcaatggtca tccccaatat tggtgctttt attgcctggg gttttattac
    28681 tgcgttattt attcccaccg gttggctgcc taacgaacat ttcgccaaaa ttgtcggccc
    28741 gatgattacc tatttattgc ccgtgatgat tggttctaca ggtggtcatc tggtcggcgg
    28801 taaacgcggg gcggtcatgg gcggaatagg tactattggt gtgatcgttg gcgcagagat
    28861 cccgatgttc cttggctcaa tgatcatggg gccgctcggt gggttggtca taaaatatgt
    28921 cgataaggca ctggaaaaac gcatacctgc cggttttgag atggttatca ataacttctc
    28981 attaggtatc gcggggatgc tcctttgtct gctgggtttt gaagtgatcg gcccggcggt
    29041 gttaattgcc aatactttcg tcaaagagtg tatcgaggcg ctggtacatg cgggttatct
    29101 gcctctgctg tcagtcatca atgaaccggc gaaagtgctt ttccttaata atgcgatcga
    29161 tcagggcgtc tattatccgc tgggaatgca acaggcttcg gttaacggta aatccatctt
    29221 ctttatggtg gcctctaacc caggtccggg cctggggctg ctgctggcgt ttaccttgtt
    29281 tggtaaaggg atgagtaaac gttctgcgcc cggggcgatg attattcact tcctcggtgg
    29341 gatccacgaa ctgtatttcc catatgtgct gatgaagccg ctgactatta ttgccatgat
    29401 tgcgggcggt atgtctggta cctggatgtt taacttactg gacggtggtc tggtggctgg
    29461 cccaagtctg gggtctatct ttgcttacct ggcactgacg ccgaaaggct cgttcctggc
    29521 gacaattgcc ggtgttacgg taggtaccct ggtgtccttt gctattactt cgctgatact
    29581 gaagatggaa aaaacagtgg aaacggagag cgaagatgag tttgctcagt caaccaatgc
    29641 ggttaaggcg atgaaacaag agggtgcatt ctcgttaagc agggttaagc gtatcgcctt
    29701 tgtttgcgat acggggatgg gctccagtgc gatgggcgcg accaccttcc gtaaacgcct
    29761 ggaaaaagcg gggctggcaa tagaagtaaa acattacgcg atagaaaacg tgcctgcgga
    29821 tgccgatatc gtcgtcactc acgccagtct ggaagggcgc gtgaaacgtg tgacggataa
    29881 accgctgata ttgattaata actatattgg cgatccaaaa ctcgacactt tatttaatca
    29941 attaaccgcc gaacataaac actgattaca gaggtaaaaa tgaaaaccaa agttgctgct
    30001 atttatggca agcgggatgt ccgtctgcgc gaatttgaac tgccagaaat taccgataat
    30061 gaactgttag tgagtgtaat ttctgacagc gtctgtttat cgacctggaa agcggcgtta
    30121 ctcggtagtg aacataaacg cgtacccgac gatttagaaa atcatccggt cattaccggg
    30181 catgaatgtg ccggggttat tgtcgaagtg ggtaaaaatc tcactggcaa atataaaaaa
    30241 ggccagcgtt ttgtattgca accggcgatg gggttaccaa gcggatattc agcaggctac
    30301 agctacgaat attttggcgg taacgccacc tatatgatta ttcccgaaat cgccattaat
    30361 ttgggctgcg tattaccgta tcacggctct tattttgctg cggcgtcgct ggtagagcct
    30421 atgtgctgca ttattggtgc ttatcatgcc aattatcaca ccacgcaata tgtttatgag
    30481 catcgcatgg gcgtcaaacc tggcggcaat attgcactgc tggcgtgtgc gggtccgatg
    30541 ggcattggcg ctatcgatta cgccattaac ggtggcatac aaccgtcacg ggtggtggtg
    30601 gtcgatatcg acgacaaacg cctggcgcag gtgcagaagc tgctgccggt ggatctggcg
    30661 gccagtaaag gcattgagct ggtgtatgtg aataccaaag ggatgagcga tccggtccag
    30721 acgctgcggg cgctgacagg agatgtcggg ttcgatgaca tttttgttta tgcggcggtg
    30781 cctgctgtcg ttgagatggc tgacgaatta ctggcggaag atggctgtct gaacttcttt
    30841 gccgggccga cggataaaaa cttcaaagtg ccgtttaatt tctacaacgt ccattacaac
    30901 agcacgcacg tagtcggtac atccggcggt tcaacggacg acatgaaaga ggcgattgcg
    30961 ttaagcgcca cggggcagtt gcagccgtcc tttatggtca cgcatatcgg tgggctggat
    31021 gcggtgccag ataccgtgct caatctgccg gatatccctg gcggtaaaaa actcatttat
    31081 aacggcgtga ccatgccgct cactgccatt gccgattttg ccgaaaaagg caaaaccgat
    31141 ccgctattta aagagttggc gcggctggtt gaggaaacgc acggcatctg gaatgaacag
    31201 gccgagaaat atctgctggc acaatttggc attgatatcg gggaggccgc gcaatgatgt
    31261 ccctggcgtg gccattattt cgcgttacgg aacaggcagc gttggctgcc tggccgcaaa
    31321 ccggatgtgg cgacaaaaat aaaattgatg gcctggcggt caccgcgatg cgccaggcat
    31381 taaacgacgt cgcttttcgt ggacgagtgg ttatcggcga aggagaaatt gaccatgcgc
    31441 cgatgctgtg gattggcgaa gaggtgggca aaggcgatgg gccagaagtc gatatcgcgg
    31501 ttgatcccat tgaaggcacg cggatggtgg cgatggggca gagcaatgcg ctggcggtca
    31561 tggctttcgc ccctcgggat agcctgttac atgcgcccga tatgtatatg aaaaagctgg
    31621 ttgttaatcg actggctgcc ggggtgattg atctgtcttt gcctctggcg gacaacttgc
    31681 gtaacgtggc gcgggcgtta ggtaaaccgc tggacaagct gcgcatggtt acgctggata
    31741 aaccgcgcct gagtgccgcg attgaggaag caacacagct gggcgtgaag gtttttgccc
    31801 tgccggatgg cgatgtcgcc gccagcgtgc tgacctgctg gcaggataat ccttacgatg
    31861 tgatgtacac catcggcggt gcgccagaag gcgtgatttc tgcctgtgcc gttaaagcat
    31921 taggcgggga tatgcaggcc gagctgattg acttttgtca ggctaaaggg gattacacgg
    31981 aaaatcggca gattgcagag caggagagca agcgttgcaa ggcaatgggc gttgacgtta
    32041 accgtgtgta ctcgctcgat gaactggtga gggggaacga tatcctcttt agcgctacgg
    32101 gcgtgacggg cggcgagttg gtgaacggta tccaacagac ggcgaatggg gtgcggacgc
    32161 agacattact gatcggcggc gcggaccaaa cgtgtaatat aatagactcc ctgcattgat
    32221 ggtgatctat cggaagacca atggcgaagc tgacagaaga tgatgtgctt gagcaactgg
    32281 atgcacagga caatttattt tcatttatga aaactgcgca ttctattttg ctccagggga
    32341 tacgccagtt tctgccgtcg ctgtttgtcg ataacgatga agagatcgtg gaatatgcag
    32401 tgaagccgtt actcgcccaa agcggcccgc ttgacgatat tgatgttgcg ctgcgtttga
    32461 tttatgcgct ggggaaaatg gataaatggc tgtacgccga tatcacgcat ttttcccagt
    32521 tctggcatta cctgaacgaa caggatgaaa cgcccggatt tgccgatgac atgacctggg
    32581 attttatcag caacgtcaat agcataaccc gcaatgcgat gctctatgac gcgttgaaag
    32641 cgatgaagtt cgccgatttc gccgtctggt cagaggcgcg ttttagcggg atggtcaaaa
    32701 cggcgctgac gctggcagta acgacaatct taaaggaatt aacgccgtga aaattgaatt
    32761 aacggtgaat gggctgaaga tacaggcaca gtaccagaac gaagagattg aaaatgtaca
    32821 taaaccgttg ctgcgtatgc tggcggcctt acagacggta aatccgcagc ggcgtacggt
    32881 ggtttttctt tgcgctccgc cggggacggg taaatctacc ctaaccacct tctgggaata
    32941 tctcgcgcaa caagacccgg agctgcccgc tattcagacg ctcccgatgg atggttttca
    33001 ccattacaat agctggctgg acgcgcatca attgcgcccc ttcaaaggcg caccagagac
    33061 atttgacgtt gcgaaactgg cggaaaatct gcgccaggtg gtggaagggg attgtacgtg
    33121 gccgcagtac gatcgacaaa agcatgatcc tgttgaagat gcgttgcacg ttaccgcacc
    33181 actcgtcatc gtcgaaggaa actggttgtt gctggacgac gagaagtggt gccagcttgc
    33241 gcaattttgt gatttctcga tctttatcaa cgcgccagct actgcgttgc gggagcgtct
    33301 ggtggggcgc aagctggcgg gaggggtatc gctggcagat gcagaagcct tttatgaccg
    33361 taccgacggg ccgaatgttc gccgggtgct ggaagagagt ctgcctgcaa atttgacctt
    33421 aatgatgacc gctacgggtg aatatcgtct ggtggattaa cgttcctgat tacaccatct
    33481 tccagtcgca ccacacgaga gaaatgacgc cgggtaaatg cggcgtcatg actgattgct
    33541 accacgctcg tgcctcgctg gcggcacttc tccagccagc tttcaaacac gctcaaccaa
    33601 ttttcgtcaa aatcccgact cggctcgtcc agcagtaata gtggcggaga gagtgcttcc
    33661 aggcaggcga cggcgaccat ccgtcgctgc gcactatgca gatccaacgg gtgcgagttg
    33721 gcagtgtctg ctaactgaca acattgcagg gcagcatggg tacgttgagt gatttcatcc
    33781 gccgggcatt tttgcagttt caaaccaaat gcgatctcgt cagcgacggt gctgtgaaaa
    33841 agttggtttt ccgcttcctg aaacagtacg ccaacctttg ccgcgcgctg gcggtttttc
    33901 aggtttttca tcgcctgttg ttgcagcata accgtaccgg ctgtgggcgt aagaagacct
    33961 gccattactc gtaacagcgt cgatttccct gcgccattgt caccggtcag cgccaaccat
    34021 tcaccttgtt tgagttgcag agaaatgtcg caaagacaat ccgttgccgc gccaggccag
    34081 cgataagata tctgatttaa cgttaacata gtggctggag cgctccgttt tgcaattgcc
    34141 acgcttgctg gcagtagttc aggaaaggtg tgcgatgacg ttcaaaaaga ataatcagcg
    34201 aaccacgttc aaacgcccag tgttgtaagc gctgcaacag catttcgctg gcctgcggcg
    34261 tcaggcggct aaaggcttca tcaagaatta agagctttgg ctgcatcgcg atggcgcagg
    34321 cgatgaccac gcgctgtgtc tctccaccgg agagtgttgc cgggtgacga tggcgcaacg
    34381 gctggcactc ggtcagagtc agggcggcat caatccgcgc cataatctct gcttcagcaa
    34441 gacacagatt ttctggccca aaggcaactt cttcttccac gctaaaggta cagccggaga
    34501 gctgcaaata gggcgattgc tggacgagct ggatggtggc ggattgttca ttaagcggga
    34561 gatgcccaat gggcgtaccg aggagcgtcc ccgtgcctgt tatctctcct ggcagaaagt
    34621 ccggatacca gcccgccatc agctgtgcca gcgtactttt gccactgccg ttgtcaccaa
    34681 agatggcgac catccccggt ttgacatagt gaaagtcata acagaacgga ggatgcgttg
    34741 agtgtgtcgg gcaataacgg aactgttcta acgtaaccat atccacgctc cgaattctgt
    34801 cagcatcagc aagatcatgg tgtaacgcgc tacgcgttgt agggtgctat cggctggtgc
    34861 ccacaacgtt gttcgtcggt tgtggatccg aaatgcccgc atatccagcg ccgcaccacg
    34921 gacagccaga tcgttaagcg cattgtgtgt tagcggaata attaacgcgg gcatcgcacg
    34981 taaacgctga taccagccct catccagcgg cacgccgcgg gcacgctgcg cttcatgaat
    35041 aatcgctaat tgccgtttta actgctcaac gaccaataac ggcccggcaa acagataagc
    35101 gacgcctggc ggcaggcgag aagcaaacag agcgcgaata aaacattgca cggggacgta
    35161 ctgcatccac aactgtgagg ttgaaacaat caccagaatc cgcaaccaga gcgtaatagc
    35221 atgcgaccac cgttctggcg agcgtggcgt gccgcttagc cattctggta gccagccacc
    35281 gtgtaccagc cacagcccgg ctcccagcga gaacatcagc cagacgacat attttgcccg
    35341 ccgccgcgtg gcctttagcg caataaggca gaaaaaggtc gccgcgctat agatcggcaa
    35401 aatggtctgc gcgggcagga taagcgtggt gcaggccgcc aatgcccaca gtgttaatga
    35461 ggtaaatgga tgcatttagc gcacggcagc cattgccgga aaatggcgcg tggtgcgaat
    35521 cggcagctgg cgcagtaaaa gccagacaat caccgctgta agaattttat cgaccaggtt
    35581 cgcgcctatc accgtaatcg ccaccgactc caccaggttt tgccccatcg agtgcatcca
    35641 ggcaacgaac aaatcggctc cgctaccggt gacaccgccg aacagcgcag tacgcagcgg
    35701 tacagcgacg accgttaccg caagcgtaat aatcacgccg ctgacaacga cttttggcag
    35761 ggtgcgaaac caacccgctc gcgccagcca accggcgacc aggccgatga ccatcgcgac
    35821 gggtgcaaat gcggcggcga tcgggtcggt cagcaatccc cagagtaaat tggtcagtaa
    35881 gccggtcagc attccgatca ccggaccaag cagtaccgcg ctaataagtg tgccgatgga
    35941 gtcgagaaat ataggtaatt tgaccatgct ggccagttgc ccgccgatca tattgatggc
    36001 gatagatata acgatcaaca ccagtgcctg actggaaaag tggctacgcg ccataagaaa
    36061 acctctttga aagtagttat ttaacggggg aaatatgcaa ctcgtcgtaa ccagaaagcg
    36121 cgcaaggttg gcggctaaac gccagttcct caaggctacc gatcaccagt tcaagcgtgg
    36181 tccgcacggt acagccgggc atcatatgac cgccaagcat cgtgccgtgt ggatcggaaa
    36241 cgcagagatg aagatgctca ccactctgtt ccagcgtgcc gtttagtgag atcacttcga
    36301 atgtaccgtt caggagcgtg gtgccttctt gcctggcata gcgcaaggcg acgtcagtca
    36361 ggctaccggt acagcctgca atccaggcgg catgaagttg atgctgctgt gcaaaagcgt
    36421 gtagctggga aaaaacttcc tgcccgggga ggaggcgcag tgcgtaaaag cgtgcggagg
    36481 aagaatatgg gtagggcaat gtcatcattg gagtactccg aaactcggac gtattgcgga
    36541 taatatcgac gctgcatcag tcatattctg atataagtca gggtttgtga cggcacaacg
    36601 aaaagatttt gctacgctta ttcgtgattc tgcaaagtgg aataaattct acaggggcgg
    36661 ggctgaaaac gtgacgtaag tcagataatt gctttctttg actggacaat cattcctttt
    36721 attccacgtt tcgcttatcc tagctgaagc gtttcagtcg attaaatgtt cgacaattaa
    36781 ccaatcagtc gcagtttgcg acaggtaagg tttccccgga cgatttgctg gattactctg
    36841 tctggcaaat ttgctcaggg aaaaccttgc aggagatcta tgaccgtacg cgtagcgata
    36901 aatggcttcg gtcgcatcgg gcgtaatgtg gttcgtgctt tgtatgaatc cggacgccgg
    36961 gcggaaatta ccgtggtggc aatcaacgaa ctggcggatg ctgcgggcat ggcgcatttg
    37021 ttgaaatatg acaccagcca tggccgtttt gcatgggaag tacgacagga acgcgatcaa
    37081 ctttttgttg gtgatgacgc catccgcgta ttgcatgaac gttcactgca atcgctcccc
    37141 tggcgtgaac ttggcgttga tgtagtcctc gactgcaccg gcgtatatgg ctcccgcgag
    37201 catggcgaag cgcatattgc cgccggggcc aaaaaagtgc tcttttcaca tcctggcagt
    37261 aacgatctcg acgcgaccgt tgtttacggc gtcaatcagg atcaacttcg tgcggaacac
    37321 cgcatcgttt ctaacgcttc ctgtaccacg aattgcataa ttcccgtcat caaattgtta
    37381 gatgatgcgt acggtattga gtccggcact gtgaccacaa ttcactccgc catgcacgat
    37441 caacaggtta ttgatgcata ccatcctgac ctgcgtcgca cccgggcagc cagccagtcg
    37501 atcattccgg tcgatactaa actggccgcc ggtatcacac gattttttcc gcaatttaac
    37561 gatcgctttg aagcgattgc ggtacgtgtg ccaaccataa atgtgacggc aatcgattta
    37621 agcgtgacgg tgaagaaacc tgtaaaagcc aatgaagtca acctgttgct gcaaaaagca
    37681 gcacaaggtg catttcatgg tatagttgac tatacggaat tgccgttggt ctctgtagat
    37741 tttaaccacg atccgcacag tgccattgtc gatggcaccc aaacccgggt cagtggcgca
    37801 cacctgatca aaacgttggt ctggtgcgat aacgaatggg gctttgctaa ccgaatgctc
    37861 gacacgacgt tagctatggc tactgttgct ttcaggtaag acgcaagcag cgtctgcaaa
    37921 acttttagaa tcaacgagag gattcaccat gtctgtaatt aagatgaccg atctggatct
    37981 tgctgggaaa cgtgtattta tccgtgcgga tctgaacgta ccagtaaaag acgggaaagt
    38041 aaccagcgac gcgcgtatcc gtgcttctct gccgaccatc gaactggccc tgaaacaagg
    38101 cgcaaaagtg atggtaactt cccacctggg tcgtcctacc gaaggcgagt acaacgaaga
    38161 attctctctg ctgccggttg ttaactacct gaaagacaaa ctgtctaacc cggttcgtct
    38221 ggttaaagat tacctcgacg gcgttgacgt tgctgaaggt gaactggttg ttctggaaaa
    38281 cgttcgcttc aacaaaggcg agaagaaaga cgacgaaacc ctgtccaaaa aatacgctgc
    38341 actgtgtgac gtgttcgtaa tggacgcatt cggtactgct caccgcgcgc aggcttctac
    38401 tcacggtatc ggtaaattcg ctgacgttgc gtgcgcaggc ccgctgctgg cagctgaact
    38461 ggacgcgctg ggtaaagcac tgaaagaacc tgctcgcccg atggtggcta tcgttggtgg
    38521 ttctaaagta tctaccaaac tgaccgtttt ggactccctg tctaaaatcg ctgaccagct
    38581 gattgttggt ggtggtatcg ctaacacctt tatcgcggca caaggccacg atgtgggtaa
    38641 atccctgtac gaagctgacc tggttgacga agctaaacgt ctgctgacca cctgcaacat
    38701 cccggttccg tctgatgttc gcgtagcaac cgagttctct gaaactgcac cggctaccct
    38761 gaaatctgtt aacgatgtga aagctgacga gcagatcctg gatatcggtg atgcttccgc
    38821 tcaggaactg gctgaaatcc tgaagaatgc gaaaaccatt ctgtggaacg gtccggttgg
    38881 cgtgttcgaa ttcccgaact tccgcaaagg tactgaaatc gtggctaacg ctatcgcaga
    38941 cagcgaagcg ttctccatcg ctggcggcgg cgacactctg gcagcaatcg acctgttcgg
    39001 cattgctgac aaaatctcct acatctccac tggcggcggc gcattcctcg aattcgtgga
    39061 aggtaaagta ctgcctgcag tagcgatgct cgaagagcgc gctaagaagt aaaaaatcac
    39121 agggcaggga aacctgccct tgtttcagcg cgcttttaga gcacgcattt tttcatactc
    39181 taaataattc gagttgcagg aaggcgacaa gagagtgaat ccccaggagc ttacataagt
    39241 aagtgactgg ggtgagcgaa cgcagacgca gcacatgcaa cttgaagtat gatgagtata
    39301 aggcccgacg atacaggaca agagacatgt ctaagatttt tgatttcgta aaacctggcg
    39361 taatcactgg tgatgacgta cagaaagttt tccaggtagc aaaagaaaac aacttcgcac
    39421 tgccagcagt aaactgcgtc ggtactgact ccatcaacgc cgtactggaa actgctgcta
    39481 aagttaaagc gccggttatc gttcagttct ccaacggtgg tgcttccttt atcgctggta
    39541 aaggcgtgaa atctgacgtt ccgcagggtg ctgctatcct gggcgcgatc tctggtgcgc
    39601 atcacgttca ccagatggct gaacattatg gtgttccggt tatcctgcac actgaccact
    39661 gcgcgaagaa actgctgccg tggatcgacg gtctgctgga cgcgggtgaa aaacacttcg
    39721 cagctaccgg taagccgctg ttctcttctc acatgatcga cctgtctgaa gaatctctgc
    39781 aagagaacat cgaaatctgc tctaaatacc tggagcgtat gtccaaaatc ggcatgactc
    39841 tggaaatcga actgggttgc accggtggtg aagaagacgg cgtggacaac agccacatgg
    39901 acgcttctgc actgtacacc cagccggaag acgttgatta cgcatacacc gagctgagca
    39961 aaatcagccc gcgtttcacc atcgctgcgt ccttcggtaa cgtacacggt gtttacaagc
    40021 cgggtaacgt ggttctgact ccgaccatcc tgcgtgattc tcaggaatat gtttctaaga
    40081 aacacaacct gccgcacaac agcctgagct tcgtattcca cggtggttcc ggttctactg
    40141 ctcaggaaat caaagactcc gtaagctacg gcgtagtgaa aatgaacatc gataccgata
    40201 cccaatgggc aacctgggaa ggcgttctga actactacaa agcgaacgaa gcttatctgc
    40261 agggtcagct gggtaacccg aaaggcgaag atcagccgaa caagaaatac tacgatccgc
    40321 gcgtatggct gcgtgccggt cagacttcga tgatcgctcg tctggaaaaa gcattccagg
    40381 aactgaacgc gatcgacgtt ctgtaagata ttcctttctg cttatctcaa ggcccgctct
    40441 gcgggtcttt ttttcgccaa aagcaaaatt gcctgatgcg ctacgcttat caggcctaca
    40501 cgtatcctgc aatatattga atttgcaggt ttttgtaggc cggataaggc gttcacgccg
    40561 catccggcat gacaaagcgc acattgatat ctgtctgagc cccgctctgc ggggattttt
    40621 tcgccaaaag caaggtgatt cagatgagaa atctgtgacc tatttggcaa aattatgctt
    40681 tattgtttac ccttgtcaga ctgcccgtca taaggcggcg gagtgtattt ctccattttg
    40741 agtcagttga aaaggaatat tgaatggaag atttgaatgt tgtcgatagc ataaacggcg
    40801 cgggaagctg gctggtagct aaccaggcgc tgctgctaag ttatgcagta aacatcgtgg
    40861 cggcactcgc gatcatcatc gttggtttga ttatcgcgcg gatgatttcc aacgcggtga
    40921 atcgcctgat gatctcccgt aaaatcgatg ccactgttgc tgattttctt tctgcattag
    40981 tccgttacgg tattatcgcc tttacgctaa tcgctgccct gggacgcgtg ggtgtacaaa
    41041 cagcgtcagt cattgctgta ctcggtgccg caggcttagc tgttggtctg gctttgcagg
    41101 ggtcactttc taacctggcc gctggcgtgt tacttgtcat gttccgaccg ttccgtgccg
    41161 gagaatatgt tgacctcggc ggcgtagccg gtactgtgct gagtgtgcag attttctcca
    41221 ccaccatgcg tactgcagac ggtaaaatta tcgttattcc gaacggtaaa attattgccg
    41281 gaaatattat taacttctcc cgcgagccag ttcgccgtaa cgaatttatt attggcgtgg
    41341 cgtatgattc cgatatcgat caggttaagc agatcctgac caatattatc cagtctgaag
    41401 atcgcatttt gaaagatcgc gaaatgactg tgcgcctgaa cgaacttggt gcatcgtcga
    41461 ttaatttcgt ggtccgcgtc tggagcaaca gcggcgatct gcaaaacgtg tactgggatg
    41521 tgctggagcg tattaaacgt gaatttgatg ccgccggtat cagcttcccg tacccgcaaa
    41581 tggatgtgaa ctttaagcgg gtgaaagaag acaaagctgc gtaatcaacg ctgaggccag
    41641 ataatactct ctggcctctc tcttattagt tattctgatt gccaattaat attatcaatt
    41701 tccgctaata acaatcccgc gatatagtct ctgcatcaga tacttaattc ggaatatcca
    41761 acgtgttttc ttattacttt caaggtcttg atcttggggc agctatgatt ctgccgctcg
    41821 gcccacaaaa tgcttttgtg atgaatcagg gcattcgtcg tcagtaccac attatgattg
    41881 ccttactttg cgctatcagc gatttggtcc tgatttgcgc ggggattttt ggtggtagcg
    41941 cgttattgat gcagtcgccg tggttgctgg cgctggtcac ctggggcggc gtagtcttct
    42001 tgctctggta tggttttggc gcttttaaaa cagcgatgag tagtaatatt gagttagcta
    42061 gtgccgaagt cctgaagcaa ggcagatgga aaattatcgc caccatgttg gcagtgacct
    42121 ggctgaatcc gcatgtttac ctggatactt ttgttgtact gggcagcctt ggcgggcagc
    42181 ttgacgtcga accaaaacgt tggtttgcgc tcgggacaat tagcgcctct ttcctgtggt
    42241 tctttggtct ggctattctc gcagcctggc tggcaccgcg cctgcgcacg gcaaaatcac
    42301 agcgcattat caatctggta gtgggatgtg tcatgtggtt tatagccttg cagctggcga
    42361 gagacggtat tgctcatgca caagccttgt tcagttaggc gctatctgat ggaaaaataa
    42421 aacagaggcg ctaagcttgc ctccagaggt cctgaatttt gggcaagtca attaacacgg
    42481 agagactaac gtgaagttca aagttatcgc cctagcggca ttaatgggta ttagcgggat
    42541 ggcagcgcag gctaacgaat tgccggatgg accgcatatt gtcacctccg gtacggcaag
    42601 tgtggatgcg gtgccagaca ttgccactct tgcgattgaa gttaacgtgg ccgcgaagga
    42661 tgccgctaca gccaagaaac aggcagatga gcgcgtcgca caatacattt ccttccttga
    42721 actcaatcag atcgcgaaaa aagatatcag ctcagcgaat ttacgcaccc agccagatta
    42781 tgattatcag gatggtaaaa gtatcctgaa aggctaccgc gctgtgagaa cggtggaagt
    42841 cacgctccgt cagttagaca aactgaattc cttgctggat ggcgcgctga aggcgggtct
    42901 taacgaaatt cgttcagtgt cgctgggcgt ggcgcagccg gatgcctata aagacaaagc
    42961 gcgtaaggca gcgattgata acgcgattca tcaggcgcag gaactggcga acggctttca
    43021 tcgtaaactg gggccggtat atagcgtgcg ctaccatgtt tccaactatc agcccagccc
    43081 aatggtgcgg atgatgaaag ccgatgccgc gccggtgtct gcccaggaaa cttacgagca
    43141 ggccgctatt cagtttgatg atcaggtcga tgtggtcttc cagttagaac ctgtggatca
    43201 acaacccgct aaaacacctg cagcacaata atacttgtag cccgacgtat tcgtcgggct
    43261 aatgccttta cccgatattg cctccttttt ctgtaatttt ctgtaaaacc atgacgtaat
    43321 cacctatctt tgctcgcggt ttcatcaagg ataggctgac tgaaacggtt aagcggacaa
    43381 ggatgcgggg
//
LOCUS       DADMJB010000010        42381 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.010, whole genome shotgun sequence.
ACCESSION   DADMJB010000010 DADMJB010000000
VERSION     DADMJB010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 42381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42381
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.010"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            100..639
                     /locus_tag="JN078_000542"
     CDS             100..639
                     /locus_tag="JN078_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9039852.1"
                     /translation="MKKVFLCAILASLSYPAIASSLQDQLSAVAEAEQQGKNEEQRQH
                     DEWVAERNREIQQEKQRRANAQVAANKRAATAAANKKARQDKLDAEASADKKRDQSYE
                     DELRSLEIQKQKLALAKEEARVKRENEFIDQELKHKAAQTDVVQSEADANRNMTEGGR
                     DLMKSVGKAEENKSDSWFN"
     gene            complement(734..2311)
                     /gene="guaA"
                     /locus_tag="JN078_000543"
     CDS             complement(734..2311)
                     /gene="guaA"
                     /locus_tag="JN078_000543"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HAY9039853.1"
                     /translation="MTENIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEA
                     QIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEA
                     SNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFVTVAST
                     ESCPFAIMANEEKRFYGVQFHPEVTHTRQGMHMLERFVRDICQCEALWTPAKIIDDAV
                     ARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDM
                     FGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQ
                     GTIYPDVIESAASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLELG
                     LPYDMLYRHPFPGPGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYNKVSQAFTV
                     FLPVRSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGIS
                     RVVYDISGKPPATIEWE"
     gene            complement(2380..3846)
                     /gene="guaB"
                     /locus_tag="JN078_000544"
     CDS             complement(2380..3846)
                     /gene="guaB"
                     /locus_tag="JN078_000544"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004159092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HAY9039854.1"
                     /translation="MLRIAKEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPM
                     LSAAMDTVTEARLAIALAQEGGIGFIHKNMSIERQAEEVRRVKKHESGVVTDPQTVLP
                     TTTLREVKELTERNGFAGYPVVTEENELVGIITGRDVRFVTDLNQPVSVYMTPKERLV
                     TVREGEAREVVLAKMHEKRVEKALVVDDEFHLIGMITVKDFQKAERKPNACKDEQGRL
                     RVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGG
                     NVATAAGARALAEAGCSAVKVGIGPGSICTTRIVTGVGVPQITAVADAVEALEGTGIP
                     VIADGGIRFSGDIAKAIAAGASAVMVGSMLAGTEESPGEIELYQGRSYKSYRGMGSLG
                     AMSKGSSDRYFQSDNAADKLVPEGIEGRVAYKGRLKEIIHQQMGGLRSCMGLTGCGTI
                     DELRTKAEFVRISGAGIQESHVHDVTITKESPNYRLGS"
     gene            4008..5378
                     /gene="xseA"
                     /locus_tag="JN078_000545"
     CDS             4008..5378
                     /gene="xseA"
                     /locus_tag="JN078_000545"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HAY9039855.1"
                     /translation="MLPSQSPAIFTVSRLNQTVRLLLEHEMGQVWISGEISNFTQPAS
                     GHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIVESM
                     QPAGEGLLQQKYEQLKAKLQAEGLFDQQYKKPLPSPAHCVGVITSKTGAALHDILHVL
                     KRRDPSLPVIIYPTAVQGDDAPGQIVRAIELANQRNECDVLIVGRGGGSLEDLWSFND
                     ERVARAIFASRIPVVSAVGHETDVTIADFVADLRAPTPSAAAEVVSRNQQELLRQVQS
                     TRQRLEMAMDYYLANRTRRFTQIHHRLQQQHPQLRLARQQTMLERLQKRMSFALENQL
                     KRTGQQQQRLTQRLNQQNPQPKIHRAQTRIQQLEYRLAETLRVQLSATRERFGNAVTH
                     LEAVSPLSTLARGYSVTTATDGNVLKKVKQVKAGEMLTTRLEDGWIESEVKNIQPVKK
                     SRKKVH"
     gene            complement(5375..5590)
                     /locus_tag="JN078_000546"
     CDS             complement(5375..5590)
                     /locus_tag="JN078_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417005.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9039856.1"
                     /translation="MELHCPQCQHVLDQDNGHARCPSCGEIIEMKALCPDCHQPLQVL
                     KACGAVDYFCQHGHGLISKKRVEFVLA"
     gene            complement(5659..7131)
                     /gene="der"
                     /locus_tag="JN078_000547"
     CDS             complement(5659..7131)
                     /gene="der"
                     /locus_tag="JN078_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417006.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HAY9039857.1"
                     /translation="MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGR
                     AEIEGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAI
                     AKHLRSREKPTFLVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLL
                     PWMEDLAPQEEVDEDAEYWAQFEVEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTL
                     TNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVI
                     KTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQV
                     KETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAV
                     EDHQPPLVRGRRVKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMG
                     SPIRIQFKEGENPYANKRNTLTPTQMRKRKRLMKHIKKNK"
     gene            complement(7249..8427)
                     /gene="bamB"
                     /locus_tag="JN078_000548"
     CDS             complement(7249..8427)
                     /gene="bamB"
                     /locus_tag="JN078_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamB"
                     /protein_id="HAY9039858.1"
                     /translation="MQLRKLLLPGLLSVTLLSGCSLFNSEEDVVKMSPLPTVENQFTP
                     TTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDG
                     WFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDG
                     LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPATAFGAAVVGGDNGRVSA
                     VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ
                     IMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYD
                     GNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR
                     "
     gene            complement(8438..9058)
                     /locus_tag="JN078_000549"
     CDS             complement(8438..9058)
                     /locus_tag="JN078_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfgM family protein"
                     /protein_id="HAY9039859.1"
                     /translation="MEIYENENDQVEAVKRFFAENGKALAVGVILGVGALIGWRYWNS
                     HQVDSARSASLAYQNAVTAVSEGKPDSIPAAEKFAAENKNTYGALASLELAQQFVDKN
                     ELEKAAAQLQQGLADTSDENLKAVINLRLARVQVQLKQADAALKTLDTIKGEGWAAIV
                     ADLRGEALLSKGDKQGARSAWEAGVKSDVTPALSEMMQMKINNLSI"
     gene            complement(9076..10350)
                     /gene="hisS"
                     /locus_tag="JN078_000550"
     CDS             complement(9076..10350)
                     /gene="hisS"
                     /locus_tag="JN078_000550"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HAY9039860.1"
                     /translation="MAKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLP
                     IVEQTPLFKRAIGEVTDVVEKEMYTFEDLNGDSLTLRPEGTAGCVRAGIEHGLLYNQE
                     QRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEH
                     VTLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQAL
                     LNDAPALGDYLDEESREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSL
                     GSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPIVDIYLV
                     ASGADTQSAAMALAERLRDELQGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEV
                     TNGTAVVKDLRSGEQTAVAQDSVAAHLRTLLG"
     gene            complement(10461..11579)
                     /gene="ispG"
                     /locus_tag="JN078_000551"
                     /gene_synonym="gcpE"
     CDS             complement(10461..11579)
                     /gene="ispG"
                     /locus_tag="JN078_000551"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HAY9039861.1"
                     /translation="MHNQAPIQRRKSTRIYVGNVPIGDGAPIAVQSMTNTRTTDVEAT
                     VNQIKALERVGADIVRVSVPTMDAAEAFKLIKQRVNVPLVADIHFDYRIALKVAEYGV
                     DCLRINPGNIGNEERIRMVVDCARDKNIPIRIGVNAGSLEKDLQEKYGEPTPQALLES
                     AMRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARSGAV
                     KSAIGLGLLLSEGIGDTLRVSLAADPVEEIKVGFDILKSLRIRSRGINFIACPTCSRQ
                     EFDVIGTVNALEQRLEDIITPMDVSIIGCVVNGPGEALVSTLGVTGGNKKSGLYEDGV
                     RKDRLDNNDMIDQLEARIRAKASQLDEARRIDVQQVEK"
     gene            complement(11606..12619)
                     /gene="rodZ"
                     /locus_tag="JN078_000552"
     CDS             complement(11606..12619)
                     /gene="rodZ"
                     /locus_tag="JN078_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytoskeleton protein RodZ"
                     /protein_id="HAY9039862.1"
                     /translation="MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTV
                     RDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELLLGLEKQAPLRAAKVAPMQSFSL
                     GKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDHKAQQEEITTMADQSSAELSSNSEQ
                     GQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANV
                     DTAATPAPTAATTPDGAAPLPTDQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLF
                     SGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQS
                     PAQ"
     gene            complement(12904..14058)
                     /gene="trmG/rlmN"
                     /locus_tag="JN078_000553"
     CDS             complement(12904..14058)
                     /gene="trmG/rlmN"
                     /locus_tag="JN078_000553"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA
                     large subunit methyltransferase RlmN"
                     /protein_id="HAY9039863.1"
                     /translation="MSEQLVTPENVTTKDGKINLLDLNRQQMREFFKDLGEKPFRADQ
                     VMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQ
                     RVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG
                     AAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPA
                     LDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVT
                     IEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVL
                     MSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEAIDIKAV"
     gene            complement(14208..14639)
                     /gene="ndk"
                     /locus_tag="JN078_000554"
     CDS             complement(14208..14639)
                     /gene="ndk"
                     /locus_tag="JN078_000554"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HAY9039864.1"
                     /translation="MAIERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTV
                     EQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGT
                     LRADYADSLTENGTHGSDSVESAAREIAYFFGEGEVCPRTR"
     gene            complement(14788..17100)
                     /gene="pbpC"
                     /locus_tag="JN078_000555"
     CDS             complement(14788..17100)
                     /gene="pbpC"
                     /locus_tag="JN078_000555"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417014.1"
                     /note="penicillin-binding protein 1C; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase PbpC"
                     /protein_id="HAY9039865.1"
                     /translation="MLRLLTKRGCWITLAAVPFLLFLAAWGADKLWPLPLHEVNPARV
                     VVAQDGTPLWRFADADGIWRYPVTIEDVSPRYLEALINYEDRWFWKHPGVNPFSVARA
                     AWQDLTSGRVISGGSTLTMQVARLLDPHPKTFGGKILQLWRALQLEWHLSKREILILY
                     LNRAPFGGTLQGIGAASWAYLGKSPANLSYSEAAMLAVLPQAPSRLRPDRWPERAEAA
                     RNKVLERMAVQGVWSREQVKESREEPIWLAPRQMPQLAPLFSRMMLGKSKSDKIVTTL
                     DAGLQRRLEELAQNWKGRLPPRSSLAMIVVDHTDMRVRGWVGSVDLNDDSRFGHVDMV
                     NAIRSPGSVLKPFVYGLALDEGLIHPASLLQDVPRRTGDYRPGNFDSGFHGPISMSEA
                     LVRSLNLPAVQVLEAYGPKRFAAKLRNVGLPLYLPNGAAPNLSLILGGAGAKLEDMAA
                     AYTAFARHGKAGKLRLQPDDPLLEWPLMSSGAAWIIRRIMADEAQPLPDSALPRVAPL
                     AWKTGTSYGYRDAWAIGVNARYVIGIWTGRPDCTPVVGQFGFASAVPLLNQVNNILLS
                     RSANLPEDPRPNSVTRGVICWPGGQSLPEGDGNCRRRLATWLLDGSQPPTLLLPEQEG
                     INGIRFPIWLDENGKRVAADCPQARQEMINVWPLPLEPWLPASERRAVRLPPASTSCP
                     PYGHYAQLPLQLTGVRDGAIIKRLPGAAEATLPLQSSGGAGERWWFLNGEPLTERGRN
                     VTLHLTDKGDYQLLVMDDVGQIATVKFVMQ"
     gene            complement(17101..22062)
                     /gene="yfhM"
                     /locus_tag="JN078_000556"
     CDS             complement(17101..22062)
                     /gene="yfhM"
                     /locus_tag="JN078_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha2-macroglobulin"
                     /protein_id="HAY9039866.1"
                     /translation="MKKLRVAACMLMLALAGCDNNDNAPTAVKKDAPSEVTKAASSEN
                     ASSAKLSVPERQKLAQQSAGKVLTLLDLSEVQLDGAATLVLTFSIPLDPDQDFSRVIH
                     VVDKKSGKVDGAWELSDNLKELRLRHLEPKRDLIVTIGKEVKALNNATFSKDYEKTIT
                     TRDIQPSVGFASRGSLLPGKVVEGLPVMALNVNNVDVNFFRVKPESLPAFISQWEYRN
                     SLANWQSDKLLQMADLVYTGRFDLNPARNTREKLLLPLGDIKPLQQAGVYLAVMNQAG
                     RYDYSNPATLFTLSDIGVSAHRYHNRLDIFTQSLENGAAQQGIEVSLLNEKGQTLTQA
                     TSDAQGHVQLENDKNAALLLARKDGQTTLLDLKLPALDLAEFNIAGAPGYSKQFFMFG
                     PRDLYRPGETVILNGLLRDADGKALPDQPIKLDVIKPDGQVLRSVVSQPENGLYHFTW
                     PLDSNAATGMWHIRANTGDNQYRMWDFHVEDFMPERMALNLTGEKTPLTPNDEVKFSV
                     VGYYLYGAPANGNTLQGQLFLRPLREAVSALPGFEFGDIAAENLSRTLDEVQLTLDDK
                     GRGEVSTESQWKETHSPLQVIFQGSLLESGGRPVTRRAEQAIWPANALPGLRPQFALK
                     SVYDYRTDSTVKQPIVDEGSNAAFDIVYSDAQGVKKAVSGLQVRLIRERRDYYWNWSE
                     DEGWQSQFDQKDLIENEQTLDLKADETGKVSFPVEWGAYRLEVKAPNEAVSSVRFWAG
                     YSWQDNSDGSGAVRPDRVTLKLDKASYRPGDTIKLHIAAPTAGKGYAMVESSEGPLWW
                     QEIDVPAQGLDLTIPVDKTWNRHDLYLSTLVVRPSDKSRSATPKRAVGVLHLPLGDEN
                     RRLDLALETPAKMRPNQPLTVKIKASTKNGEKPKQVNVLVSAVDSGVLNITDYVTPDP
                     WQAFFGQKRYGADIYDIYGQVIEGQGRLAALRFGGDGDELKRGGKPLVNHVNIVAQQA
                     LPVTLNEQGEGSVTLPIGDFNGELRVMAQAWTADDFGSNESKVIVAAPVIAELNMPRF
                     MASGDTSRLTLDITNLTDKPQKLNVALTASGLLELVSDSPAAVELAPGVRTTLFIPVR
                     ALPGYGDGEIQATISGLALPGETVADQHKQWKIGVRPAFPAQTVNYGTALQPGETWAI
                     PADGLQNFSPVTLEGQLLLSGKPPLNIARYIKELKAYPYGCLEQTASGLFPSLYTNAA
                     QLQALGIKGDSDEKRRASVDIGISRLLQMQRDNGGFALWDKNGDEEYWLTAYVMDFLV
                     RAGEQGYSVPTDAINRGNERLLRYLQDPGMMSIPYADNLKASKFAVQSYAALVLARQQ
                     KAPLGALREIWEHRADAASGLPLLQLGIALKTMGDATRGEEAIVLALKTPRNSDERIW
                     LGDYGSPLRDNALMLSLLEENKLLPDEQYTLLNTLSQQAFGERWLSTQESNALFLAAP
                     TIQDLPGKWQAQTSFSAEPLTGEKTLNSNLNSDQLATLQVRNSGDQPLWLRMDASGYP
                     QSAPLPANNVLQIERHILGTDGKSKSLDSLRSGDLVLVWLQVKASNSVPDALVVDLLP
                     AGLELENQNLANGSASLEQSGDEVQNLLNQMQQASIKHIEFRDDRFVAAVAVDEYQPV
                     TLVYLARAVTPGTYQVPQPMVESMYVPQWRATGAAEDLLIVRP"
     gene            22262..23107
                     /gene="sseA"
                     /locus_tag="JN078_000557"
     CDS             22262..23107
                     /gene="sseA"
                     /locus_tag="JN078_000557"
                     /EC_number="2.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-mercaptopyruvate sulfurtransferase"
                     /protein_id="HAY9039867.1"
                     /translation="MSTTWFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLN
                     GHIPGAVFFDIEALSDHTSPLPHMLPRPKTFAVAMRELGVNQDKHLIVYDEGNLFSAP
                     RAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVKVTDV
                     LLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDE
                     LDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARADLP
                     VEPVK"
     gene            complement(23600..24376)
                     /gene="sseB"
                     /locus_tag="JN078_000558"
     CDS             complement(23600..24376)
                     /gene="sseB"
                     /locus_tag="JN078_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708361.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enhanced serine sensitivity protein SseB"
                     /protein_id="HAY9039868.1"
                     /translation="MSETKNELEDLLEKAATEPAHRPAFFRTLLESTVWVPGTAAQGE
                     AVVEDSALDLQHWEKEDGTSVIPFFTSLEALQQAVEDEQAFVVMPVRTLFEMTLGETL
                     FLNAKLPTGKEFMPREISLLIGEEGNPLSSQEILEGGESLILSEVAEPPAQMIDSLTT
                     LFKTIKPVKRAFICSIKENEEAQPNLFIGIEADGDIEEIIQATGSVATDTLPGDEPID
                     ICQVKKGEKGISHFITEHIVPFYERRWGGFLRDFKQNRII"
     gene            complement(24518..25801)
                     /gene="pepB"
                     /locus_tag="JN078_000559"
     CDS             complement(24518..25801)
                     /gene="pepB"
                     /locus_tag="JN078_000559"
                     /EC_number="3.4.11.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311416.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase PepB"
                     /protein_id="HAY9039869.1"
                     /translation="MTEAMKITLSTQPADARWGEKATYSINNDGITLHLNGADDLGLI
                     QRAARKIDGLGIKHVQLSGEGWDADRCWAFWQGYKAPKGTRKVEWPDLDDAQRQELDN
                     RLMIIDWVRDTINAPAEELGPSQLAQRAVDLISNVAGDRVTYRITKGEDLREQGYMGL
                     HTVGRASERSPVLLALDYNPTGDKEAPVYACLVGKGITFDSGGYSIKQTAFMDSMKSD
                     MGGAATVTGALAFAITRGLNKRVKLFLCCADNLISGNAFKLGDIITYRNGKKVEVMNT
                     DAEGRLVLADGLIDASAQKPEMIIDAATLTGAAKTALGNDYHALFSFDDALAGRLLAS
                     ASQENEPFWRLPLAEFHRSQLPSNFAELNNTGSAAYPAGASTAAGFLSHFVENYQQGW
                     LHIDCSATYRKAPVEQWSAGATGLGVRTIANLLTA"
     gene            complement(25979..26179)
                     /gene="iscX"
                     /locus_tag="JN078_000560"
     CDS             complement(25979..26179)
                     /gene="iscX"
                     /locus_tag="JN078_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004104502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HAY9039870.1"
                     /translation="MGLKWTDSREIGEALYDAYPDLDPKTVRFTDMHQWICDLEDFDD
                     DPQASNEKILEAILLVWLDEAE"
     gene            complement(26191..26526)
                     /gene="fdx"
                     /locus_tag="JN078_000561"
     CDS             complement(26191..26526)
                     /gene="fdx"
                     /locus_tag="JN078_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015683702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HAY9039871.1"
                     /translation="MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEK
                     SCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLSCQARVTDEDLVVEIPR
                     YTINHAREH"
     gene            complement(26528..28378)
                     /gene="hscA"
                     /locus_tag="JN078_000562"
     CDS             complement(26528..28378)
                     /gene="hscA"
                     /locus_tag="JN078_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001559634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HAY9039872.1"
                     /translation="MALLQISEPGLSAAPHQRRLAAGIDLGTTNSLVATVRSGQAETL
                     ADHEGRHLLPSVVHYQQQGHSVGYDARTNAALDTANTISSVKRLMGRSLADIQQRYPH
                     LPYQFQASENGLPMIETAAGLLNPVRVSADILKALAARATEALAGELDGVVITVPAYF
                     DDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISIL
                     RLSRGVFEVLATGGDSALGGDDFDHLLADYIREQADIPDRSDNRVQRELLDAAIAAKI
                     ALSDADSVTVNVAGWQGEISREQFNELIAPLVKRTLLACRRALKDAGVEADEVLEVVM
                     VGGSTRVPLVRERVGEFFGRPPLTSIDPDKVVAIGAAIQADILVGNKPDSEMLLLDVI
                     PLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRS
                     LARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE
                     IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDNAA
                     AHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKGHSVDEV"
     gene            complement(28395..28910)
                     /gene="hscB"
                     /locus_tag="JN078_000563"
     CDS             complement(28395..28910)
                     /gene="hscB"
                     /locus_tag="JN078_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012131249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone HscB"
                     /protein_id="HAY9039873.1"
                     /translation="MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQ
                     LAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREEL
                     DEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTVRKLRFLDKLRSS
                     AEQLEEKLLDF"
     gene            complement(29006..29329)
                     /gene="iscA"
                     /locus_tag="JN078_000564"
     CDS             complement(29006..29329)
                     /gene="iscA"
                     /locus_tag="JN078_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017373466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HAY9039874.1"
                     /translation="MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEF
                     VDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCG
                     ESFHV"
     gene            complement(29346..29732)
                     /gene="iscU"
                     /locus_tag="JN078_000565"
     CDS             complement(29346..29732)
                     /gene="iscU"
                     /locus_tag="JN078_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000331707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HAY9039875.1"
                     /translation="MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQ
                     IKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLVEAQAIKNTDIAEELELPPV
                     KIHCSILAEDAIKAAIADYKSKREAK"
     gene            complement(29760..30974)
                     /gene="iscS"
                     /locus_tag="JN078_000566"
     CDS             complement(29760..30974)
                     /gene="iscS"
                     /locus_tag="JN078_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311423.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HAY9039876.1"
                     /translation="MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFG
                     WQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKT
                     EHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVV
                     QDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYV
                     RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNR
                     LWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSASLE
                     PSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQ
                     GVDLNSIEWAHH"
     gene            complement(31086..31574)
                     /gene="iscR"
                     /locus_tag="JN078_000567"
     CDS             complement(31086..31574)
                     /gene="iscR"
                     /locus_tag="JN078_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002913993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HAY9039877.1"
                     /translation="MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQ
                     LFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQGGD
                     KCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRTRTQDAIDVKL
                     RA"
     gene            complement(31844..32584)
                     /gene="trmJ"
                     /locus_tag="JN078_000568"
     CDS             complement(31844..32584)
                     /gene="trmJ"
                     /locus_tag="JN078_000568"
                     /EC_number="2.1.1.200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ"
                     /protein_id="HAY9039878.1"
                     /translation="MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDS
                     QAIALAAGASDVIGNAHIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA
                     EAANTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAW
                     LATQENGEQVEHEETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTR
                     ARPESQELNILRGILASIEQQNKGNKAE"
     gene            32703..33506
                     /gene="suhB"
                     /locus_tag="JN078_000569"
     CDS             32703..33506
                     /gene="suhB"
                     /locus_tag="JN078_000569"
                     /EC_number="3.1.3.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000553460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-1-monophosphatase"
                     /protein_id="HAY9039879.1"
                     /translation="MHPMLNIAVRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVD
                     KAAEAVIIDTIRKSYPQHTIITEESGELEGTDQDVQWVIDPLDGTTNFIKRLPHFAVS
                     IAVRIKGRTEVAVVYDPMRNELFTATRGQGAQLNGYRLRGSTARDLDGTILATGFPFK
                     AKQYATTYINIVGKLFNECADFRRTGSAALDLAYVAAGRVDGFFEIGLRPWDFAAGEL
                     LVREAGGIVSDFTGGHNYMLTGNIVAGNPRVVKAMLANMRDELSDALKR"
     gene            33651..34505
                     /locus_tag="JN078_000570"
     CDS             33651..34505
                     /locus_tag="JN078_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311427.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAY9039880.1"
                     /translation="MALPVNKRVLKILFILFVVAFCVYLVPRVAINFFYYPDDKIYGP
                     DPWSAESVEFTAKDGTRLQGWFIPSSTGPADNAIATIIHAHGNAGNMSAHWPLVSWLP
                     ERNFNVFMFDYRGFGKSKGTPSQAGLLDDTQSAINVVRHRSDVNPQRLVLFGQSIGGA
                     NILAVIGQDDREGIRAVILDSTFASYATIANQMIPGSGYLLDESYSGENYIASVSPIP
                     LLLIHGKADHVIPWQHSEKLYSLAKETKRLILIPDGEHIDAFSDRHGDVYREQMVDFI
                     LSALNPQN"
     gene            34696..35976
                     /gene="csiE"
                     /locus_tag="JN078_000571"
     CDS             34696..35976
                     /gene="csiE"
                     /locus_tag="JN078_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417030.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stationary phase inducible protein CsiE"
                     /protein_id="HAY9039881.1"
                     /translation="MMPTLAPPSVLSAPQRRCQILLTLFQPGLTATMATFSELNGVDD
                     DIASLDISETGREILRYHQLTLTTGYDGSYRVEGTVLNQRLCLFHWLRRGFRLCPSFI
                     TSQFTPALKSELKRRGIARNFYDDTNLQALVNLCSRRLQKRFETRDIHFLCLYLQYCL
                     LQHHAGITPQFNPLQRRWAESCLEFQVAQEIGRHWQRRALQPVPPDEPLFMALLFSML
                     RVPDPLRDAHQRDRQLRQSIKRLVNHFRELGNVRFYDEQGLCDQLYTHLAQALNRSLF
                     AIGIDNTLPEEFARLYPRLVRTTRAALAGFESEYGVHLSDEESGLVAVIFGAWLMQEN
                     DLHEKQIILLTGNDSEREAQIEQQLRELTLLPLNIKHMSVKAFLQTGAPRGAALIIAP
                     YTMPLPLFSPPLIYTDLTLTTHQQEQIRKMLESA"
     gene            complement(35968..37107)
                     /locus_tag="JN078_000572"
     CDS             complement(35968..37107)
                     /locus_tag="JN078_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate MFS transporter"
                     /protein_id="HAY9039882.1"
                     /translation="MVLQSTRWLALGYFTYFFSYGIFLPFWSVWLKGIGLTPETIGLL
                     LGAGLVARFLGSLLIAPRVSDPSRLISALRVLAMMTLLFAVAFWAGAHVAWLMLVMIG
                     FNLFFSPLVPLTDALANTWQKQFPLDYGKVRLWGSVAFVIGSALTGKLVTMFDYQVIL
                     ALLTLGVASMLLGFLIRPTIQPQGASRQQESTGWSAWLALVLQNWRFLACVCLLQGAH
                     AAYYGFSAIYWQAAGYSASAVGYLWSLGVVAEVIIFALSNKLFRRCSARDMLLISAIC
                     GVVRWGIMGATTALPWLIVVQILHCGAFTVCHLAAMRYIAARQGSEVIRLQAVYSAVA
                     MGGSIAIMTVFAGFLYQYLGHGVFWVMALVALPAMFLRPKVVPSC"
     gene            complement(37267..38157)
                     /gene="hcaR"
                     /locus_tag="JN078_000573"
     CDS             complement(37267..38157)
                     /gene="hcaR"
                     /locus_tag="JN078_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator HcaR"
                     /protein_id="HAY9039883.1"
                     /translation="MELRHLRYFVAVAQALNFTRAAEKLHTSQPSLSSQIRDLENCVG
                     VPLLVRDKRKVALTAAGECFLQDALAILEQAENAKLRARKTVQEDRQLTIGFVPSAEV
                     NLLPKVLPMFRLRQPDTLIELVSLITTQQEEKIRRGELDVGLMRHPVYSPEIDYLELF
                     DEPLVVVLPVDHPLAHEKEITAAQLDGVNFVSTDPAYSGSLAPIVKAWFAQENSQPNI
                     VQVATNILVTMNLVGMGLGVTLIPGYMNNFNTGQVVFRPIAGNVPSIALLMAWKKGEM
                     KPALRDFIAIVQERLASVTA"
     gene            38293..39654
                     /locus_tag="JN078_000574"
     CDS             38293..39654
                     /locus_tag="JN078_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate/cinnamic acid dioxygenase
                     subunit alpha"
                     /protein_id="HAY9039884.1"
                     /translation="MTTPSDLNIYQLIDTQNGRVTPRIYTDPDIYQLELERIFGRCWL
                     FLAHESQIPKPGDFFNTYMGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRA
                     FTCPYHGWSYGINGELIDVPLEPRAYPQGLCKSHWGLNEVPCVESYKGLIFGNWDTSA
                     PGLRDYLGDIAWYLDGMLDRREGGTEIVGGVQKWVINCNWKSPAEQFASDQYHALFSH
                     ASAVQVLGAKDDGSDKRLGDGQTARPVWETAKDALQFGQDGHGSGFFFTEKPDANVWV
                     DGAVSSYYRETYAEAEQRLGEVRALRLAGHNNIFPTLSWLNGTATLRVWHPRGPDQVE
                     VWAFCITDKAASDEVKAAFENSATRAFGPAGFLEQDDSENWCEIQKLLKGHRARNSKL
                     CLEMGLGQEKRRDDGIPGITNYIFSETAARGMYQRWADLLSSESWQEVLDKTAAYQQE
                     VMK"
     gene            39651..40169
                     /locus_tag="JN078_000575"
     CDS             39651..40169
                     /locus_tag="JN078_000575"
                     /EC_number="1.14.12.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate/cinnamic acid dioxygenase
                     subunit beta"
                     /protein_id="HAY9039885.1"
                     /translation="MSAQVSLELHLRISQFLFHEASLLDDWKFRDWLAQLDEEIRYTM
                     RTTVNAQTRDRRKGVQPPTTWIFNDTKDQLERRIARLETGMAWAEEPPSRTRHLISNC
                     QISETDIPNVFAVRVNYLLYQAQKERDETFYVGTRFDKVRRLEDDNWRLLERDIVLDQ
                     AVITSHNLSVLF"
     gene            40169..40489
                     /locus_tag="JN078_000576"
     CDS             40169..40489
                     /locus_tag="JN078_000576"
                     /EC_number="1.14.12.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-phenylpropionate/cinnamic acid
                     dioxygenase ferredoxin subunit"
                     /protein_id="HAY9039886.1"
                     /translation="MNRIYACPVADVPEGEALRIDTSPVIALFNVGGEFYAINDRCSH
                     GNASMSEGYLEDDATVECPLHAASFCLKTGKALCLPATDPLTTYPVHVEGSDIFIDLP
                     EAQP"
     gene            40486..41298
                     /locus_tag="JN078_000577"
     CDS             40486..41298
                     /locus_tag="JN078_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate-dihydrodiol/cinnamic
                     acid-dihydrodiol dehydrogenase"
                     /protein_id="HAY9039887.1"
                     /translation="MSDLHNESIFITGGGSGLGLALVERFIEEGAQVATLELSAAKVA
                     SLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNASLVNTPA
                     ETLETGFHELFNVNVLGYLLGAKACAPALIASEGSMIFTLSNAAWYPGGGGPLYTASK
                     HAATGLIRQLAYELAPKVRVNGVGPCGMASDLRGPQALGQSETSIMQSLTPEKIAAIL
                     PLQFFPQPADFTGPYVMLASRRNNRALSGVMINADAGLAIRGIRHVAAGLDL"
     gene            41308..42330
                     /locus_tag="JN078_000578"
                     /pseudo
     CDS             41308..42330
                     /locus_tag="JN078_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417037.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phenylpropionate dioxygenase ferredoxin
                     reductase subunit"
BASE COUNT        10020 a        11717 c        10642 g        10002 t
ORIGIN      
        1 acgacaggtt tagccgttgt tattaccaca acgtataacg aaacgcgtat tcagccaaat
       61 actaaatgtc ctgaaaagag ctaataatca ggaggagtca tgaagaaagt ttttctttgc
      121 gccatcttgg cctccttaag ctatccggct atcgcctcat cattgcagga tcaactctct
      181 gctgtagcag aagcggaaca gcaaggtaaa aatgaagagc aaaggcagca tgacgaatgg
      241 gtcgcggagc gcaacaggga aatccagcaa gagaagcaac gtcgcgcaaa tgcccaggtc
      301 gccgctaaca aaagagcggc aacggcagca gcaaataaga aagctcgtca ggataaactg
      361 gacgccgaag cctctgcgga caaaaaacgc gatcaaagtt atgaagatga gctacgcagc
      421 ttagagattc agaaacaaaa actggcgctg gcaaaagaag aagcccgcgt taagcgagaa
      481 aacgaattta tcgatcagga actgaagcac aaagctgcgc aaaccgatgt ggtgcaatct
      541 gaagctgacg ccaacagaaa tatgactgaa ggcggtcgcg atctgatgaa aagcgtgggc
      601 aaagcagaag agaacaaatc ggacagctgg tttaattaat cgatgttagt aacttcaagc
      661 ctatgattct tgaagataaa aaaccctctg tagtaacaga gggttttgtt cattcatagt
      721 gcagggatta aaatcattcc cactcaatgg tagctggcgg cttgccgctg atgtcataca
      781 ccacgcggga aataccgttc acttcattga taatgcggtt ggaaacgcga ccgaggaaat
      841 cgtacggcag atgcgcccag tgtgcggtca taaagtcgat ggtttcgaca gcacgcagag
      901 agacaaccca gtcatactta cgaccatcgc ccattacgcc aacggaacgt accggcagga
      961 acacagtgaa cgcctggctg actttgttgt acaggtccgc tttacgcagt tcttcaatga
     1021 agatggcgtc agcacggcgc agcaggtcac agtactcttt cttcacttca cccagcacac
     1081 gaacgccaag gcctggtccc gggaacgggt gacggtacag catgtcgtac ggcaggccca
     1141 gctccagacc aatcttacgc acttcgtctt tgaacagctc tttcagcggt tcaaccaggc
     1201 ccatcttcat ctctttcggc aggccgccca cgttgtggtg agatttgatg acgtgtgctt
     1261 taccggttgc agaagccgca gattcgataa cgtcagggta gatggtgccc tgcgccagcc
     1321 acttcacgtc ttccagtttc agcgcttctt catcgaacac ttcaacgaaa acgcgcccga
     1381 tgattttacg ttttgcttcc ggatcgtttt cgccagccag cgctgacagg aagcgatctt
     1441 ctgccggtac gtgaacaatg ttcagaccaa agtgatcgcc aaacatatcc agaacctgct
     1501 ctgcttcgtt gagacgcagc aggccgttgt cgacgaatac gcaagtcaga tttttaccga
     1561 tagcgcggtg cagcagcatt gcggttacgg aggaatccac accaccagag aggccgagga
     1621 tgactttatc gtcgcctacc tgctcgcgga tgcgagctac agcatcgtcg ataattttcg
     1681 ctggcgtcca cagggcttca cactggcaga tatcacgcac aaaacgctcc agcatgtgca
     1741 taccctggcg ggtgtgagtc acttccgggt ggaactgtac gccatagaag cgtttttctt
     1801 cgttagccat aatggcaaac gggcagcttt cggtgctggc tacggtgacg aagtcggacg
     1861 ggatagcggt aactttatcg ccgtggctca tccagacatc gagcagcggt ttaccgtctg
     1921 cggtcagcgc atcttcgata ccgcgaacca gtgcgctgtc gtttacgact tcaacctgcg
     1981 cgtagccaaa ttcacgttcg ttagaggctt caacgtgacc gcccaactgc attgccatgg
     2041 tctgcatgcc atagcaaacg ccgaataccg gtacgcctgc ttcaaagaca tactgcggcg
     2101 cacgcggact gttttcttca gtagtacttt ccgggccgcc ggaaagaata atgccgcttg
     2161 gattgaagtc acgaatttgt gcttctgtca catcccacgc ccacagttcg cagtaaacac
     2221 ccagctcacg cacgcggcgc gcaaccagtt gagtgtactg agaaccgaag tccagaatga
     2281 ggatgcgatg cttatgaatg ttttccgtca ttgacgctta ttccgaggca agtgaaacag
     2341 ataatataaa tcgcccgaca tgaagtcggg cgaagagaat caggagccca gacggtagtt
     2401 cggggactct ttagtaatgg tcacgtcgtg aacgtggctt tcctgaatgc ccgcaccgct
     2461 gatacgtaca aactccgctt tagtacgcag ttcgtcgata gtaccacagc cggtcaggcc
     2521 catacaggag cgcaggccgc ccatctgctg gtgaatgatc tctttcaggc gacctttata
     2581 ggctacgcga ccttcgatac cttccggcac tagtttgtcg gcagcgttgt cactctggaa
     2641 gtaacggtca gaagaacctt tggacatcgc acccagagag cccataccac ggtaagattt
     2701 gtaagaacgg ccctggtaga gttcaatttc acccggagat tcttcagtac ccgccagcat
     2761 ggaacccacc attaccgcgc ttgcgccagc ggcgatagct ttggcgatgt cgccggagaa
     2821 gcgaatacca ccatctgcga taaccggaat acctgtgcct tccagcgctt caactgcgtc
     2881 agcaacggca gtgatctgcg gaacacctac gccagtaacg atacgagtcg tacagataga
     2941 accagggccg ataccgactt taaccgcgct gcaaccagct tctgccaaag cgcgtgcacc
     3001 tgcagctgtt gccacgttgc cgccgatgat ttgcagatcc ggatatttag cacgggtttc
     3061 acggatacgc tgcaaaacgc cttctgagtg gccgtgggag gagtcgatca gcagaacgtc
     3121 aacgccagcg gcaaccagcg cgtcaacacg ctcttcgtta cccgcacctg cgccaactgc
     3181 agcaccaaca cgcagacggc cttgctcgtc tttacaggcg ttcggtttac gttccgcttt
     3241 ctggaagtct ttcacggtga tcatgccgat caggtggaat tcgtcatcaa ccaccagcgc
     3301 tttttcaacg cgtttttcgt gcatttttgc cagcaccact tcacgggctt caccttcacg
     3361 cacggtgacc agacgctctt tcggcgtcat gtaaacgcta accggctggt tcaggtcggt
     3421 aacaaaacgc acgtcacgac cggtgataat acccaccagt tcgttttctt cggtaacaac
     3481 cggatagccc gcaaaaccgt tacgctcggt cagttctttc acttcgcgca gcgtcgtggt
     3541 tggcagaaca gtctgcggat cagtcaccac accagattcg tgttttttca cacggcgaac
     3601 ttcttctgcc tggcgttcaa tggacatgtt tttgtggata aagccgatac cgccttcctg
     3661 agccagagca atagccaggc gcgcttccgt tacggtatcc attgctgcgg aaagcatagg
     3721 gatattcaga cgaatagttt tcgtcagctg ggtgctgagg tcagcagtat tcggcagaac
     3781 ggtagaatga gcaggaacga ggagaacgtc gtcaaacgtc agagcttctt tagcgatacg
     3841 tagcatgggc aatatctcga ccagagtggt taataaatat tgccgcggca ttatacagag
     3901 cgtaaccgat tgcatctacc cctttttgca aaaaatgctt gctatccccg aagggcgggt
     3961 tactatcgac tgaataacct gctgatttag aatttgatct cgctcacatg ttaccttctc
     4021 aatcccctgc aatttttacc gttagtcgcc tgaatcaaac ggttcgtctg ctgcttgagc
     4081 atgagatggg acaggtttgg atcagcggcg aaatctctaa tttcacacaa ccggcttccg
     4141 gtcactggta ctttacactc aaagacgaca ccgcccaggt acgctgcgcg atgttccgca
     4201 acagcaaccg ccgggtgacc ttccgtccac agcatggaca acaagtttta gttcgcgcca
     4261 atattacgct ctacgagccg cgcggtgact accagataat cgttgagagt atgcagccgg
     4321 ccggtgaagg gctgctgcaa cagaagtacg aacagctcaa agcgaagttg caggctgaag
     4381 gtttgttcga tcagcaatac aaaaaaccac ttccctcccc tgcgcattgc gttggtgtga
     4441 tcacctcaaa aaccggtgct gcgctacatg atattttgca tgtgttaaaa cgtcgcgatc
     4501 cttctctacc ggtgatcatc taccccaccg ccgttcaggg cgatgacgca ccggggcaaa
     4561 ttgttcgcgc cattgaactg gcgaatcagc gcaatgagtg cgacgtgttg atcgttgggc
     4621 gcggcggcgg ttcgctggaa gatttatgga gttttaacga cgaacgcgta gcgcgggcga
     4681 tttttgccag ccgcattccg gtcgtcagcg ccgtcgggca tgagacggat gtgaccattg
     4741 ccgattttgt tgccgatctg cgtgcgccaa cgccgtctgc cgccgctgaa gtagtgagcc
     4801 gtaatcagca agagttactg cgccaggtgc aatcgacccg tcaacggctg gagatggcga
     4861 tggattatta tctcgccaac cgcacgcgtc gctttacgca gatccatcac cgattacagc
     4921 aacagcatcc gcagctccgg ctggcacgcc agcaaaccat gcttgagcgc ctgcaaaagc
     4981 ggatgagctt tgcgctggaa aatcaactta agcgtaccgg gcaacagcag cagcggttaa
     5041 cacagcggct gaatcagcaa aatccacagc cgaagattca tcgcgcgcaa acgcgcattc
     5101 agcaactgga atatcgttta gcagaaaccc tgcgcgtaca gcttagcgcc acgcgtgaac
     5161 gtttcggtaa tgcagtaacg cacctcgaag ccgtaagccc actgtcaacg ctggcgcgtg
     5221 gatacagcgt tactactgct actgacggca atgtactgaa aaaagtgaag caagttaaag
     5281 cgggtgaaat gctaaccaca cgtctggaag acggctggat agaaagtgaa gttaaaaaca
     5341 tccagccagt aaaaaaatcg cgtaaaaagg tgcattaagc cagcacgaat tcaacgcgtt
     5401 ttttcgatat caagccatgc ccgtgctgac agaagtaatc tactgcaccg caggctttta
     5461 acacctgcaa cggttgatgg cagtctggac aaagagcttt catttcaata atttccccgc
     5521 aggatgggca acgcgcatgg ccgttatcct gatcaagcac atgctgacat tgtggacaat
     5581 gcagttccat atgaattcct ccggtagcca tccctctaca ttcatagagg gaatggcaga
     5641 taaaatactt acggataatt atttattttt cttgatgtgc ttcatcagac gcttacgttt
     5701 acgcatctgg gttggcgtca gggtgttacg cttgttcgca tacgggtttt ccccttcttt
     5761 gaactgaata cgaatcggcg atcccattac gtccagcgat ttgcggaagt agttcatcaa
     5821 gtagcgcttg taggaatcag gcaggtcttt cacctgatta ccgtgaatca ccacaatcgg
     5881 cgggttataa ccaccagcgt gggcatattt cagcttcaca cgacgaccgc gtaccagcgg
     5941 cggttggtga tcttcaacag ccatcgtcat gatgcgcgtc agcatagagg tccccacacg
     6001 acgggtggag ctgtcatacg cttcacgtac tgattcaaac aagttaccaa caccactgcc
     6061 gtgcaaggca gagataaagt gcacacgagc aaaatcgata aagcccagac ggaagtccag
     6121 cgtttctttc acctgctctt tcacttcctg gctcaggcca tcccacttat tcaccacaat
     6181 gacaagtgag cgcccactat tgagaataaa gcccagcagc gagagatcct gatcggaaat
     6241 accttcgcgc gcatcaatca ctaacatcac cacgttggca tcttcaatgg cctgcaacgt
     6301 tttgattacg gagaatttct ctacagcatc ggtgattttg ccgcgtttac gtacgccagc
     6361 ggtgtcaatg agcacatact cacgtccatc gcgttccatt ggaatgtaga tactgtcacg
     6421 cgtcgtgcca ggcatgtcat aaacaacaac gcgctcttca ccaagaatac ggttagtgag
     6481 tgtagactta cctacgttcg gacgacccac aatcgccagt ttgatcggca gactttgcgg
     6541 gtcgaagtcg tcttcctctt cttcttcgcc gttctcttcc acttcaaatt gcgcccagta
     6601 ttcagcgtct tcgtcgactt cctcttgcgg tgcgagatct tccatccacg gcagcagcac
     6661 atgctccagc agacttaata cgccacgacc gtgagacgcg gcgatcgggt agatttcacc
     6721 taagccaagc gagtagaaat caaccactgc ctgatcggga tccagaccgt cagttttgtt
     6781 tgccaccagg aaggtcggtt tttcacggga gcgcagatgt ttggcaatcg cttcatctgc
     6841 cggcatcagg cccgcgcgcg catccaccat aaacagtacg acgtccgctt cttcaatcgc
     6901 cagcagcgac tgttccgcca tgcgggtttc tacaccgtct tctgtgccat caatcccgcc
     6961 ggtatcaata cagataaact cacggccttc aatttccgca cgaccgtact tacggtcacg
     7021 agtcagaccc gggaaatccg caaccagcgc atctcgggtg cgagttagac ggttaaataa
     7081 cgtggatttt cctacgttag ggcgcccgac aagcgcgacc acaggtacca tgtttaaagc
     7141 ctcattttta taaatcatca gacaacgcac gctatattcg cgtcgttgtt aaaaacagga
     7201 aaacggcccc tgtccaggag ccgttttcaa agtgaacgac agagacgatt aacgtgtaat
     7261 agagtacacg gttccgtctt ttgcctggat cagcagtttg ccgtcagcgg caaccggttc
     7321 agtctggaaa ccggaactat caactttttg ctgggcaacg aaacgaccat cttcgacatt
     7381 aatccagtgc agataacctt cactgtcacc gaccaccagg ttgccatcat acagcaccgg
     7441 agaagtcagc aggcgatgca acagatcgct ttgtgtccac agcgtaacgc cgccatcaat
     7501 ggtcaacgcc atcacccggt cattttgatc gaccagatag atgcgattgc cgtcgacgat
     7561 gaaatcattc accgaaccca gttcgcgttt ccacataatc tgaccactgc gcagatcaag
     7621 cgccgtcagg ttaccattat aggccagcgc gaaaacaacg ccgttaacaa cgacgggagt
     7681 cgtgtcaaca tcgctcagac ggtcaatttc ggtagaaccg gtcgcctggg aaatacgctg
     7741 ctgccaaatc atctggccct gttccatcag cactgcgctg acgcgaccat tatcgccccc
     7801 cacgacggcc gcaccaaaag ccgttgccgg cgcagactcg ccacgcaaag agagcgaagg
     7861 catatcgagg ttaactgtcc atttgacagc gccgtcagct tcgttcagcg cttgtaactg
     7921 accgttactg gtgtggatta acaccagacc gtcgctgacc accgggcgcg aaagtgcttc
     7981 acccgcgact ttagtttgcc atgccacagt accatcgctg gtattcagcg cgtaaacctg
     8041 cgccttttcg ctgccaatgt agacatgccc accagacacg gtcacaccgc cagaaagtaa
     8101 tgcaggctct ttagagaacc agccatcttt ctcggccagg ctgacagacc agatttcttt
     8161 gccatcatcc gcattcagcg cttttaccaa accagcgcgg tccgctgcat agacaacgtt
     8221 gtccgccagt gccggatgaa gattggaata gaagttgcca atgccgctac caacggaagt
     8281 actccacgcc gtggtcggcg taaactggtt ttcaacggtt ggcaatgggg acatctttac
     8341 cacatcttct tcgctgttaa acagcgaaca gccgcttaaa agggtaacgg aaagcagtcc
     8401 tggcagcagt aatttacgca attgcatcgg gtccctctca gatggacaaa ttattaattt
     8461 tcatctgcat catttcgctc agtgccggag taacatcgct tttcacgcct gcttcccatg
     8521 cactacgcgc accttgctta tcacctttgc tcagcaatgc ttcaccacgc aggtcggcaa
     8581 caatggcagc ccacccttca cctttgatgg tatcaagggt tttcagcgcg gcatcagcct
     8641 gcttgagctg tacctgaacg cgagcaagac gcagatttat cacggctttg agattttcat
     8701 cgctcgtgtc tgccagcccc tgttgtaact gggcggcagc tttctctagt tcatttttgt
     8761 caacaaattg ctgcgcaagt tccaaagaag ccagcgcacc ataagtattt ttattttcag
     8821 cagcaaattt ttccgccgcc gggatgctat ccggtttgcc ttcgctcact gcggtaaccg
     8881 cattttgata ggcaagagaa gcggagcgtg cagaatcaac ctgatggctg ttccagtagc
     8941 gccagccaat cagtgcgcca acgcccaaaa tcaccccaac agccagtgct ttgccatttt
     9001 cagcaaaaaa gcgtttaacc gcttctacct ggtcgttttc gttctcgtaa atttccacgc
     9061 tgtccttctc cttccttaac ccagtaacgt gcgcaaatgc gcggctacgc tatcctgcgc
     9121 aactgccgtt tgctcaccag agcgcaaatc cttcactact gctgtgccgt tagtcacttc
     9181 agactcaccc agcaccacag caacgcgggc accccattta tcagcacggg caaactgttt
     9241 cttaaagttg ccgccgccgt ggttggtcat caatttcacg ccctgtaatt catcacgcag
     9301 acgctcagct aatgccatag ccgcagattg tgtatcagca cctgaagcca ccaggtatat
     9361 atcgacaata ggatcggctt taaattccgg attaacggcc tgtactaaca atacaagacg
     9421 ttcgaggccc atcgcaaaac cgacagccgg tgttgcacga ccgcccagtt gttccacaag
     9481 accgtcataa cgaccgcctg cacacacggt gccctgggag ccgagactgt tagtcaccca
     9541 ctcgaaaacg gtacggttat agtaatccag accacgcacc agacgctggt ttacggtgta
     9601 agcgatcccc gcgctctcaa gcagtttgca cagaccggca aaatgctcac gagattcctc
     9661 gtccagataa tcacctaatg ccggagcgtc gttgagaagc gcctgcactt ccggattttt
     9721 tgaatccagc acgcgcagcg ggttagtgta catgcggcgt ttgcagtctt cgtccagctt
     9781 ttctttatgc tgctcaagga atgccaccag cgcatcgcgg taattggcgc gtgcttccag
     9841 cgaaccgata gaattcagct caagagttac gtgttcggaa atacccagcg cgcgccacca
     9901 gcgggcggtg agcataatca gttcagcgtc gatatccgga ccttgcagac cgaaaacttc
     9961 gcagcccaac tgatggaact gacgataacg ccctttctgc ggacgctcgt gacggaacat
    10021 cggcccgata taccacagac gctgttcctg attgtacaga agaccatgct cgatgccggc
    10081 gcgtacacag cccgccgtcc cttcagggcg cagagtcagg ctgtcgccat tgagatcctc
    10141 aaaggtgtac atctcttttt caaccacgtc ggtgacttca ccaatcgcac gtttgaatag
    10201 cggggtctgc tctacaatcg gcaagcggat ttcactgtaa ccgtagctgc cgagcacgtt
    10261 tttcagtgtg ccttcaatgc gctgccagat ggccgtttcg ccaggcaggt aatcgttcat
    10321 gccgcgaatg gcttgaatgt tttttgccac gtttattctc tttctgaata taaaaatgaa
    10381 ccctcaacgc ttccctcaat gtttggggag ccatgcgggt tcaatcatac acgggaagcg
    10441 aggcgcttcc catcacgtta ttatttttca acctgctgaa cgtcaattcg acgcgcttca
    10501 tccagctgac tggctttcgc acgaatgcgt gcttccagct ggtcgatcat atcgttgttg
    10561 tccagacggt ctttgcgcac gccatcttca tagaggccgc ttttcttgtt gccgccggtg
    10621 acgccgagtg tagaaaccag cgcctcacct gggccattca ccacgcagcc gataatagaa
    10681 acgtccatcg gagtgatgat atcttccagg cgttgctcca gcgcgttaac cgtaccgata
    10741 acatcaaatt cctgacgcga acaggtcggg caggcgatga agttgatccc tcgcgaacgg
    10801 atacgcagcg atttcaaaat atcgaaaccg actttgatct cttcgaccgg atcggccgcc
    10861 agcgatacgc gcagcgtgtc gccgatgcct tcagacagca gcagacctaa accaatggcg
    10921 gattttactg ccccgctgcg tgcaccaccg gcttcggtga tccccagatg cagcggctga
    10981 tcgatctgtt ttgccagcaa acgataagac tcaacagcga ggaagacgtc agacgctttc
    11041 acgctgactt tgaactgatc gaagttcagg cgatcgagat gatcaacatg acgcatggcg
    11101 gattccagca acgcctgcgg cgtcggttcg ccatactttt cttgcagatc tttttccagc
    11161 gatccggcgt taacgccaat acggatcgga atgtttttat cgcgcgcaca gtcaaccacc
    11221 atgcgaatac gctcttcatt accgatattg ccagggttaa tacgcagaca atcgacgccg
    11281 tattccgcta ctttcagcgc aatgcgatag tcgaagtgga tgtcagccac cagcggcacg
    11341 ttaacccgct gtttgatgag tttgaacgct tctgccgcgt ccatcgtcgg tacggagaca
    11401 cggacgatat cagcgccaac gcgttccagc gccttgattt gattgaccgt tgcttcgaca
    11461 tctgtcgtac gcgtattggt catggactgt acggcgatgg gagcaccatc gccaatcggc
    11521 acattcccaa cgtaaatacg tgttgatttt ctacgttgaa ttggagcctg gttatgcatg
    11581 aaaaatctcc cgcgttaccc gtctgttact gcgccggtga ttgttcggca ttgagggtca
    11641 gacgcgcaac ctggttagtt ctgataaaac gactcagatc gacaggtttc ccttgatact
    11701 ggatctgtac tgcggctggc gcaccaattt tcagtttgta cggtgcctgg ccggttaagt
    11761 tcaaattacc gtctttacgc tgcataccgc taaacaattt tttaccggta gcatcagtga
    11821 cctccagcca gcaatcggca gtaaagttca tcaccagcgc attcggatca gccaccggcg
    11881 tggtcacgcc agcctgatcg gttggcaacg gcgcagcacc atctggcgtt gttgctgccg
    11941 ttggtgccgg ggtcgcggcg gtatcaacat ttgcctgcga aggcgaaaca accgcattct
    12001 gttgcggatc aacagctggt gctggcgcag ttacggcagg tgtttgcgtg ttggttgcgg
    12061 tagtatccac agacgctggc ggcgtggacg ttgtagccgg gtctgtagtt gtcgacgtat
    12121 ttaacggaac actctgcccc tgctcgctat tactgctcag ttccgccgaa gattgatcgg
    12181 ccatagtggt gatctcttcc tgctgagctt tgtggtcttg ccaccaccag gcaccgctca
    12241 ggccgataac cacaaacaac accagccagg tgaaggtcat cagccagccg tcacgttttt
    12301 tgcggcgttt accgagggaa aaactctgca tcggcgcaac tttcgcagcc cgtagtggag
    12361 cctgcttttc cagccctagc agcagttctt cttctggaat atgtaccaga cgcgcataag
    12421 agcggatata tccgcgcagg aatgttgaag caagatcggc gggtgcctta tcttcttcaa
    12481 tgtcgcgtac cgtggaaacc ttcaggcaaa gtcgctcggc aacggcctgc tgactaagtc
    12541 ctagttgttc gcgagcatta cgcaggcgag cgccggtagt aagtgcttca ttttggtcgt
    12601 gcgtggcttc agtattcatt cgctgcaggt acgtttaaat gagaattgag atgccggtga
    12661 accatcatgc tcacccacac cgcgaaacat ccgttaagtt aaccgttatc atacagtata
    12721 agaccgtctg tgtgctcgtg acaaagccca cattcactaa ggctaactta ctgttgcatc
    12781 gttacatact gccttaaagt cagcaaaaac gcaccgttaa tattgaccag acaattgcaa
    12841 cttaatactt cattcataaa agattacgcc acggtacata aagtaaccgt ggcgtaatgg
    12901 ctatcagacc gctttaatgt cgatggcttc accctgcatc cgtttacgca gggtacgttt
    12961 cgtacggtcg ataacatcgc ccgccaactg accacaggca gcatcgatat catcaccacg
    13021 agttttacgc acaatagtgg tgaaaccgta gctcatcagc acttttgaga aacggtcgat
    13081 acggctgttc gaactgcgtc catacggcgc gcccgggaac gggttccacg ggatcaggtt
    13141 gatcttacac ggcgtatctt tcagcagctc cgccagttgg tgcgcgtgtt cagtgccgtc
    13201 gttaacgtgg tcaagcatca cgtattcaat agtgactcgg ccctgattgg cgttggattt
    13261 ctccagataa cggcgcaccg cagcaaggaa cgtttcgata ttgtactttt tgttgatcgg
    13321 cacaatttcg tcacgaattt cgtcgttcgg cgcgtgcagg gaaattgcca gtgcaacgtc
    13381 gatcatatcg cccagtttat ccagcgccgg aactacaccg gaagtagaaa gcgtgacgcg
    13441 acgtttagac aggccaaaac cgaaatcatc cagcatgatt tccatcgccg gaacgacgtt
    13501 gttcaggttg agcagcggct cgcccatgcc catcatcact acgttagtga ttgggcgctg
    13561 accggtgact tttgctgcgc cgacgatttt cgccgcacgc cacacctggc cgataatttc
    13621 cgacacccgc aggttgcgat taaagccctg ctgggcggtg gaacagaatt tacactccag
    13681 cgcacacccc acctgcgaag agacgcagag cgtggcacgg tcgtcttccg ggatatacac
    13741 cgtttcgacg cgctgatcgc caacggcgat cgcccattta atggtgccgt cggatgaacg
    13801 ctgttcttca accacttccg gtgcgcggat ttccgccacc tctttcagtt tgccgcgcaa
    13861 cactttgttg atgtcggtca tctcatcaaa gttgtcgcag caatagtgat acatccactt
    13921 catcacctga tcggcgcgga agggtttttc acctaaatct ttaaaaaact cccgcatctg
    13981 ctgacggttg agatccagca ggttgatttt tccatctttc gtggtgacgt tttcaggtgt
    14041 gactaattgt tcagacatat gctattccgg cctcgttatt acacgttatg gcccctggag
    14101 ggttgaaaaa agaaacgccc cggtgagcgg ctgctcgtcc gggggcgctg cattgtacaa
    14161 attctggcgc acggatgcca cgtttgcacg cggcatttac gaaattatta acgggtgcgc
    14221 gggcacactt cgccttcgcc aaagaaataa gcgatttcgc gagcggcaga ttcgacggaa
    14281 tcagaaccgt gggtaccgtt ttcggtcagg ctgtcagcgt aatcagcgcg cagagtacca
    14341 gccagtgcgt ttgccggatt ggtcgcgccc agcagatcgc ggtgacgctg aacggcgttt
    14401 tcaccttcca gcacggaaac cacgatcggg ccagaggtca tgaattcaac cagaccatca
    14461 aagaacggtt ttccatcgtg ttcagcataa aagccacgtg cctgttcaac ggtcaggtgc
    14521 agcattttgg tgccgacaat tttgaaccct gcagcttcaa agcgcgcaaa gatattacca
    14581 atgacgtttt ttgctaccgc gttcggtttg atgatggaaa aagtacgttc aatagccatt
    14641 tttacctctg taaattgttc tgttgttgtc tgtaccagcg tacgagatgg cgcggattat
    14701 aatgagcaac agggccgttg actattgatg aaggtaacat ttttttaaaa taaaatgagt
    14761 tttagcaaca atcagggaca aaacagacta ttgcatgaca aatttcactg tcgcgatttg
    14821 ccccacgtca tccatcacca gcaattgata atcaccttta tccgtcaaat gcagggtcac
    14881 gttgcgcccg cgttcagtta acggttcgcc attcagaaac caccagcgtt cacctgcccc
    14941 tccacttgat tgcaacggca aagtcgcttc cgctgcgccc ggtaaacgtt taataatcgc
    15001 gccatcgcga acgcctgtca gctgcagcgg gagctgggca tagtgaccgt atggcgggca
    15061 acttgtcgag gccggtggta agcgcacagc gcgacgttct gatgcgggca gccagggttc
    15121 cagcggtagc ggccagacat ttatcatttc ttgtcgcgct tgcgggcaat cagcggcaac
    15181 acgtttgcca ttttcatcca gccagatggg gaaacgaatg ccattaatgc cttcctgctc
    15241 cggcagtaat agagttggcg gctgactccc gtccagcagc caggttgcca ggcggcggcg
    15301 acagttaccg tcaccttccg gcaaagactg tccgcccggc cagcagataa cgccacgagt
    15361 gactgagttc gggcgcgggt cttccggcag attcgcactg cgcgacagta agatattatt
    15421 gacctgattc aacaatggta cggcactggc aaagccaaac tgaccaacaa cgggcgtgca
    15481 gtccggtctg ccagtccaga tcccaatgac atagcgagcg ttaaccccaa tcgcccaggc
    15541 gtcacgataa ccatagctgg tgcccgtttt ccatgccagt ggggcgacgc gcggcaaggc
    15601 actatccggc aagggttgcg cttcatcagc cataatccgg cgaatgatcc acgccgcccc
    15661 cgacgacatt aaaggccatt caagcagcgg atcgtcaggc tgtaagcgca atttgcctgc
    15721 cttgccgtgg cgagcaaacg cggtatacgc tgccgccata tcttccagtt ttgcaccagc
    15781 gccgccgaga atgagtgaaa gattcggcgc agcaccgttg ggcaaatata acggcaatcc
    15841 aacattgcgt aactttgccg caaaccgttt cggtccatag gcttccagca cctgcacagc
    15901 aggtaagttc agcgagcgca ccagcgcctc gctcatgctg atcgggccat gaaaaccgct
    15961 atcaaagtta cctggtcgat aatcaccggt gcgccggggg acgtcttgca gcagtgatgc
    16021 cgggtggatc aagccttcat ccagcgccag accataaaca aacggtttga gcaccgatcc
    16081 tggcgatcgg atcgcattga ccatatcaac atgaccaaag cgtgaatcat cgttgagatc
    16141 aaccgatccc acccagccgc gaacacgcat atcggtatga tcaaccacga tcatcgccag
    16201 tgagctgcgc ggtggcaacc gccctttcca gttttgcgcc agttcttcca gacgtcgttg
    16261 aagaccggca tccagcgtag taacgatttt gtcgcttttg cttttaccga gcatcatgcg
    16321 cgaaaacagc ggtgccagtt gcggcatttg tcggggtgcc agccagatgg gttcttccct
    16381 tgactctttt acctgctcac gggaccacac accttgcacg gccatccgtt cgagcacttt
    16441 attacgcgcg gcttcggcac gctccggcca acgatccggg cgcagtcggc tgggcgcttg
    16501 cggtaacacc gccagcattg ccgcctcgga atagcttaaa ttcgcaggcg attttccgag
    16561 ataagcccaa cttgccgcac cgatcccctg caacgtaccg ccaaacggag cgcggttaag
    16621 atacaagatc agaatttcac gcttagacaa atgccactcc agttgcaacg cgcgccagag
    16681 ctggagaatt ttgccaccaa atgttttggg gtgaggatca agcagacgag caacctgcat
    16741 agtgagcgtg ctgccaccag aaataacccg tcccgaagtg agatcttgcc atgctgcgcg
    16801 cgccaccgag aatggattca cccccggatg cttccagaac cagcgatctt cataattgat
    16861 cagcgcttca aggtaacgtg gagacacatc ttcgattgtt accggataac gccagatgcc
    16921 atcagcatcg gcgaagcgcc agagcggcgt accatcctgc gccacgacca ctcgtgcggg
    16981 attgacttca tgcagcggta gaggccagag tttatctgct ccccacgctg caagaaaaag
    17041 gagaaatggc acagctgcca gcgttatcca gcagccgcgt ttggttaaca agcgaagcat
    17101 ttacggtcgg acaatcagca gatcttcagc cgcgccggtc gcccgccatt ggggaacata
    17161 cattgattcc accatcggtt gcggtacctg atacgttccc ggcgtcaccg cccgcgccag
    17221 atacaccagc gttaccggtt ggtattcatc aacggcaacc gccgccacaa agcgatcgtc
    17281 acggaactca atgtgcttaa tgctcgcctg ctgcatctgg ttcagtaagt tttgcacttc
    17341 gtcaccactt tgctccaggc tggcgctacc gttcgccaga ttctgatttt ccagttccag
    17401 acccgcaggc agcagatcca cgactaacgc atccggcacg ctgttactgg cttttacctg
    17461 caaccagacc agcaccagat cgccgctacg taacgagtcc agcgatttgc tcttaccatc
    17521 agtaccaaga atatgacgct cgatttgcag cacattgttc gccggtaaag gtgcggattg
    17581 cggataaccg ctggcatcca tacgcaacca taacggctga tcgccactgt ttctcacctg
    17641 caaggtggca agttgatcgc tattcagatt gctgtttagc gttttctcgc ctgtcagcgg
    17701 ctcagctgag aaagaggttt gcgcctgcca tttacccggt aaatcctgaa tcgtaggggc
    17761 agccaggaac aacgcgttac tttcctgcgt cgatagccag cgttcaccaa acgcctgctg
    17821 cgaaagtgtg ttcagcaaag tgtactgctc atcgggtagc agtttatttt cttccagcaa
    17881 ggagagcatt aacgcgttgt cgcgcagtgg actaccgtaa tcacccagcc atatccgctc
    17941 atcactattt ctcggcgttt tcagcgccag cacaatcgct tcttcaccac gcgttgcatc
    18001 acccatggtt ttcagcgcaa tgccaagttg cagcagcggt aaaccagaag cggcatctgc
    18061 acgatgctcc cagatttcac gcagcgcacc cagtggtgct ttttgctgac gggccagcac
    18121 cagcgcagcg taagactgaa cggcgaattt actggctttg agattatccg cgtacgggat
    18181 cgacatcatg cccggatctt gtaaatagcg cagcagacgc tcattacccc ggttaatggc
    18241 gtctgtcggc acgctgtaac cctgttcgcc tgcgcggacc aggaaatcca tcacgtaagc
    18301 cgtcagccag tactcttcgt caccgttttt atcccacagc gcaaagccgc cgttatcacg
    18361 ttgcatttgc agcaaacggg aaatgccgat atcgaccgat gcacggcgtt tctcatcact
    18421 gtcgcctttg atgcccaacg cctgcagttg ggctgcgttg gtataaagtg acgggaacag
    18481 gccgctggcg gtttgctcaa gacagccgta cggatacgct tttaactctt tgatataacg
    18541 tgcaatgttc agcggtggtt tgccgctcaa caacaattgc ccttccagcg taacaggcga
    18601 gaagttttgc aatccatccg ccggaatcgc ccatgtctca ccaggctgta acgccgtacc
    18661 gtaattaacc gtttgtgccg ggaacgccgg acggacgccg attttccact gcttatgctg
    18721 atcggcaacg gtttcacccg gtaacgctaa cccgctaatg gtggcctgaa tttctccatc
    18781 gccataaccc ggcaatgctc gcaccgggat aaacagcgta gtacgcacac ctggcgctaa
    18841 ttcaacggct gcgggtgaat cgctgaccag ttcaagcaaa ccactggcgg tcagggcaac
    18901 gttcagtttt tgcggtttat cggtaagatt agtgatatcc agcgtcagac gcgaggtatc
    18961 gccactcgcc ataaagcgcg gcatgttcag ttcagcaatc accggtgcgg caactatcac
    19021 tttgctttcg ttgctaccga aatcatctgc cgtccaggct tgcgccatga cgcgcaattc
    19081 accgttaaaa tcgccaatcg gcagtgtaac cgagccttcg ccctgttcgt tgagcgttac
    19141 cggcagcgcc tgctgcgcga caatattgac gtgattgacc agcggtttac caccacgttt
    19201 cagctcatca ccatcgccac cgaaacgcag agctgccaga cgcccctgac cttcaataac
    19261 ctgaccgtaa atatcgtaaa tgtctgcgcc atagcgtttc tgaccaaaga acgcctgcca
    19321 cggatctggc gtgacgtagt cagtaatatt cagcacacca ctatcaacgg cagacaccag
    19381 cacattcacc tgtttaggct tctcgccatt tttagtgctg gctttaattt tcacggttaa
    19441 tggttgattg ggacgcattt ttgctggtgt ttccagcgcc agatcgaggc gacggttttc
    19501 atcgccaagc ggcagatgca acacaccaac cgcgcgtttt ggcgtcgcgg agcgagattt
    19561 atcgctagga cgtaccacca gcgtacttaa atacagatca tgacgattcc aggttttatc
    19621 gaccggaatc gtcagatcca gcccttgagc cggaacatca atctcttgcc accacagcgg
    19681 cccttcactg gactcgacca tcgcataacc tttacccgcc gttggcgcgg cgatatgcaa
    19741 cttaatggtg tcgccagggc gataactggc tttatccagt ttcagcgtga cacggtcggg
    19801 tcgcactgcg ccgctaccgt cgctgttgtc ctgccagcta tagccagccc agaaacgaac
    19861 actactgacc gcttcattcg gcgctttgac ttccagacga taagcgcccc actctaccgg
    19921 aaaactgacc ttgccggttt cgtccgcttt cagatccaga gtttgttcat tttcgatcag
    19981 atctttttga tcaaactgtg actgccagcc ttcatcttct gaccagttcc agtagtaatc
    20041 gcggcgttcg cgaatcaggc gcacctgcaa gcccgacacg gcttttttca cgccttgtgc
    20101 atcgctataa acgatgtcaa aagcggcgtt actgccttca tcaacaatgg gctgtttcac
    20161 cgtgctgtca gtgcgataat cgtaaaccga tttcaaggcg aactgcggac ggagccccgg
    20221 caatgcattg gcaggccaga tagcctgctc agcgcggcgc gtcaccgggc gaccgcccga
    20281 ttccagcaaa ctgccctgga aaataacctg caatggggaa tgcgtttcct tccactggct
    20341 ttctgtagaa acttcgccgc gccctttatc atccagcgtc aactgaactt catccagcgt
    20401 gcgggaaagg ttttcggcag ctatatcgcc gaattcaaaa ccaggtaagg ctgacacagc
    20461 ctcacgcagt gggcgcagga aaagttgccc ttgcaaagta ttaccattag caggcgcacc
    20521 gtacaggtag tatcccacca cggagaattt cacttcatca ttcggcgtaa gcggggtttt
    20581 ctcaccggtc agattcagcg ccatacgctc tggcataaaa tcttcgacgt ggaaatccca
    20641 catccggtac tggttatcgc ccgtgttggc gcgaatatgc cacataccgg ttgccgcatt
    20701 gctatcgagt ggccaggtaa agtggtagag gccattctcc ggctgactaa cgacgctcct
    20761 gagtacctgc ccgtcaggtt taatcacgtc taacttgatg ggttgatcgg gcaatgcttt
    20821 accgtctgca tcgcgcagta aaccattgag gattaccgtt tcacctgggc gataaagatc
    20881 gcgtgggcca aacatgaaaa actgtttgct atagcctggc gcgccagcaa tgttaaattc
    20941 tgctaagtcc agcgccggaa gttttaaatc gagtagcgtt gtctgaccgt ctttacgtgc
    21001 cagcagtaat gccgcatttt tatcattttc cagctgcaca tgcccctgag cgtcactggt
    21061 tgcctgagtc agagtctgcc ctttctcatt taataaagag acttcaattc cttgctgggc
    21121 cgcgccgttt tccagacttt gggtaaagat atccagacga ttgtgataac ggtgagctga
    21181 aacgccgata tcacttaacg taaacagcgt cgcgggatta ctgtaatcgt aacgtccagc
    21241 ctgattcatc acagccagat acacgcccgc ctgctgaagc ggtttgatat cgcccagcgg
    21301 cagcaataat ttttcacggg tgttacgcgc aggattgaga tcaaaccgtc cggtgtagac
    21361 cagatccgcc atctgcagca gtttgtctga ctgccagttc gccagcgaat tgcggtattc
    21421 ccattggcta atgaatgctg gcagagattc tggcttaacg cggaagaagt taacatcgac
    21481 attattaacg ttgagcgcca ttaccggcag cccttcaacg actttgccag gcagcagcga
    21541 accacggctg gcaaaaccga cgctgggttg gatgtcgcgg gtagttatag ttttttcgta
    21601 atctttactg aaggttgcgt tgttgagtgc tttgacctcc ttgccaatag taacgatcaa
    21661 atcacgtttc ggttcgaggt ggcgtaaacg tagctcttta agattatctg acagctccca
    21721 ggcaccatcc actttgccgc tttttttatc gacgacatga ataacgcgtg agaaatcctg
    21781 atccgggtcg agagggatgg agaacgtcag caccagcgtg gctgcaccat caagttggac
    21841 ttcagagaga tccagcaatg tcagcacctt accggcactc tgttgggcca gtttttgtct
    21901 ctccggcacg gagagttttg ctgaactcgc gttttctgaa gaggccgctt tagtaacttc
    21961 agaaggcgca tcttttttca ccgctgttgg cgcgttatcg ttgttgtcgc accctgccag
    22021 cgccagcatt agcatgcagg cggctacgcg taactttttc atccctgcca caatggcccg
    22081 ttagcaacgt cgaataatta ttatgcgtga gaatttacgt tatgtaattc agtatcacgc
    22141 ccatacaatc cgaattttag tgagaattgt ggctcagaca gccaaatcag cctctttcgc
    22201 ttgtcgcttt tcactaaaca tccgacaatt tagcctaacc ccggcaaaaa tggagatgcc
    22261 tatgtccacg acatggtttg taggagccga ctggctcgcc gaacatattg atgacccgga
    22321 aattcagatt atcgatgccc gcatggcgtc gcctggacag gaagatcgta acgttgctca
    22381 ggagtatctg aatggacata ttcccggcgc agtgtttttt gatatcgaag cgctttctga
    22441 tcacacttcc ccgcttccgc acatgctgcc gcgcccgaaa acgttcgccg tggcgatgcg
    22501 tgaattaggc gttaaccagg ataagcacct gattgtctat gacgaaggta atcttttctc
    22561 agccccacga gcatggtgga tgctgcgcac ctttggtgta gagaaagtgt cgattctggg
    22621 gggtggactt gcaggctggc agcgcgatga tctgctgtta gaagaaggtg cagtagagct
    22681 gccggaagga gagtttaacg ccgcgtttaa tcctgaagcc gtggtgaaag taaccgatgt
    22741 attattggca agccatgaaa atacggcgca aattattgat gcccgcccgg ctgcacgttt
    22801 taacgcagaa gttgatgaac ctcgcccagg tttacgtcgc ggacatattc ccggagcact
    22861 gaatgttccg tggacggaac tggtgcgcga aggcgaacta aaaacgaccg atgaactgga
    22921 tgcgatattt tttggtcgcg gcgtcagcta cgacaaacca attatcgtca gctgcggctc
    22981 tggtgtaacg gcagccgtgg ttttgttagc actcgcgacg ctggatgtgc caaacgtgaa
    23041 actgtacgac ggcgcatgga gtgaatgggg cgcgcgggca gatttaccgg ttgagccagt
    23101 gaaataagta ttttacaggc aataaaaaac cgccgaattt ggcggttttt tattgctggt
    23161 ctggttcgcg gcctttccag caggttgtat taccgtagta atgcaagcgc gtctcagcgg
    23221 agacaatact cgccagtaac tctctttttg tcaagcaaaa gagagttatt attgttctgt
    23281 tagtatatta tccactgcgg ccctttccgc cgtctcgcaa gcgggcggtg gcttaaggaa
    23341 aggatgttcc gcgaccgtta gagcaagcgc gtctcagcgc ttgctatcgc ggcaatatcg
    23401 ccagtggtgc tgtcgtgatg cggtcttcgc atggaccgca caatgaagat acggtgcttc
    23461 tgtatcgtac ttattgtttc tggtgcgctg ttttcccaag taaataataa ccggagtctc
    23521 tccggcgaca atttactggt ggttaacaac cttcagagca gcaagtaagc ccgaatgccg
    23581 ccctttaggg cggcatattt tagattatcc ggttttgttt aaagtcacgc aaaaaacctc
    23641 cccagcgacg ttcatagaat ggcacaatat gttcggtaat aaagtggcta attccttttt
    23701 cccctttttt cacctgacaa atatcgattg gttcatcgcc aggtaatgta tcggtcgcta
    23761 cacttcccgt cgcctgaata atttcttcga tatcaccatc ggcttcaatg ccaataaata
    23821 aattaggctg tgcctcttcg ttctctttaa ttgaacaaat aaaagcacgc ttcaccggct
    23881 taatggtttt aaataaggtg gtgagtgaat caatcatttg tgctggcggc tctgcaactt
    23941 ccgataatat cagcgattca ccgccttcca ggatttcctg gctgctcagc ggatttccct
    24001 cttcaccaat caacaaactg atttcacgcg gcataaattc tttaccggtc ggcagtttgg
    24061 cattaaggaa gagcgtttcg ccaagggtca tctcaaacaa tgtgcgaacg ggcattacga
    24121 caaatgcctg ttcgtcttca accgcctgtt gaagcgcttc taacgaggtg aaaaaaggaa
    24181 tgacgctggt gccgtcttct ttttcccagt gctgtaaatc aagcgcacta tcttcaacca
    24241 cagcctcgcc ctgcgccgcc gtaccaggca cccagacggt ggattccagt agagtacgga
    24301 aaaaggccgg gcggtgtgcc ggttcggttg ctgctttttc cagcaggtct tcaagttcgt
    24361 tttttgtttc ggacataaga accacaattc attcaacgtt cggggcgcaa atgcctgatg
    24421 cgctacgctt atcaggccta caagggattc gcaatttgtt gaatttgcag aatttgtagg
    24481 ccggataagg cgtttacgcc gcatccggca tattagttta cgccgttaac agattagcta
    24541 tcgtgcgcac accaagtccc gtagcgcccg cagaccactg ttcaaccggc gctttacggt
    24601 aagtcgccga gcagtcgata tgcagccagc cttgctgata gttctcaaca aagtgcgaca
    24661 ggaagcccgc cgccgtgctc gcgcctgccg gatacgccgc gcttccggta ttgttcagtt
    24721 cggcaaagtt agacggcagc tggctgcggt ggaattccgc cagcggcaga cgccagaatg
    24781 gttcgttctc ttgtgaggca ctcgccagca aacgaccggc aagcgcatcg tcaaaactga
    24841 acagcgcgtg ataatcatta cccagcgcag ttttcgccgc cccggtgagg gtcgccgcat
    24901 caatgatcat ttccggtttc tgcgcactgg catcaatcag accatcggca agcaccagac
    24961 gcccttcggc atcagtgttc atcacttcaa cttttttacc gttgcgatag gtgatgatat
    25021 cgcccagctt gaacgcattg ccgctaatca ggttatccgc acagcagagg aacagcttca
    25081 cgcgcttgtt cagtccgcgc gtaatggcaa atgccagcgc cccggtaacc gttgccgcgc
    25141 cgcccatgtc cgacttcatc gagtccataa acgcagtctg tttgatgctg tagccgccgg
    25201 agtcaaaagt gataccttta cctaccaggc acgcgtacac tggcgcttct ttatcgccag
    25261 ttgggttgta atccagcgcc agcaataccg gagaacgttc tgaagcgcgt ccgacggtgt
    25321 gcagccccat ataaccttgc tcacgcagat cttcgccttt ggtgatccga taagtcacac
    25381 gatcgcccgc gacgttgctg atcagatcaa cagcacgctg tgccagttgc gatggtccca
    25441 attcttctgc cggtgcgttg atggtgtcac gcacccagtc gatgatcatc aggcggttat
    25501 ccagttcctg gcgctgggca tcgtccagat ccggccactc cactttacgc gtgcctttcg
    25561 gggctttgta accttgccag aatgcccagc agcgatccgc atcccagcct tcaccgctta
    25621 actgaacatg cttgatgccc agaccgtcaa tcttgcgcgc cgcacgctgg atcagcccca
    25681 gatcgtctgc cccgttcaaa tgcagggtaa tgccgtcatt attaatgctg taagttgctt
    25741 tttctcccca gcgcgcgtcg gcaggttggg tagagagggt aatcttcatc gcttctgtca
    25801 ttttagttat ccttctttgt aaaagggccg ccagttggca gccccaggat ttttccgcta
    25861 aatgattcgc gttgcaggaa ggcggcaagt gagtgaagcc ccaggagcat agataactat
    25921 gtgactgggg tgaacgagcg cagccaacgc atctgcggcg tgaagcatga cgcggaaatt
    25981 attcggcctc gtccagccag actaacaaaa tcgcttcgag gattttctcg ttggatgcct
    26041 gcgggtcgtc gtcgaaatct tccagatcgc aaatccactg atgcatatcg gtgaatcgaa
    26101 ccgttttcgg atccagatca ggatacgcat cgtacagtgc ttcgccaatt tcgcggctat
    26161 cggtccactt aagtcccata ctaacctctg ttaatgctca cgcgcatggt tgatagtgta
    26221 acgcgggatt tcgactacta aatcttcgtc ggtaacgcgt gcctggcagc ttaaacggct
    26281 ttcgggctcc agtccccagg ctttgtccag catgtcgtct tcctgctctg agctttctgg
    26341 cagcgagtca aaaccttcac gaacgatgca gtggcaggtg gtgcaagcac aggatttttc
    26401 acaggcgtgt tcaatctcga taccgttacg cagcgctgcg tcgagaatgg tttcaccgct
    26461 attagcttcc agaacagcgc catcagggca gaggtcctga tgaggcaaaa taacaatctt
    26521 tggcatatta aacctcgtcc acggaatggc ctttcagcgc acgacgaacc gactggtcca
    26581 tgcggcgagc ggcgaaatcc tgggtttgtt tgtctacgtt tttaatcgct tgttcgatgg
    26641 cgtcaacatc atcgccctga gccacttcac tcaggtgagc ggcagcattg tcaatgacct
    26701 gacgctctgc ggcgcttaac agcgcggcat cagcagccag cgcgccgtgc agactttcca
    26761 gcacacgcgc cgcttctact ttttgttctg ccagcatacg ggcttttacg tcctgctcgg
    26821 catagctcat tgaatctttg atcatcgaag cgatttcgct atcggtcaga ccgtaagaag
    26881 gtttgacctg aatagacgcc tcaacgccgg tggatttctc catcgccgtc acgctcaaaa
    26941 gaccgtcggc atcgacctgg aacgtcacgc gaatatgcgc accgccagcc ggtagcgccg
    27001 gaataccacg cagcgcaaaa cgcgccagtg agcggcagtc ctgcaccagt tcgcgctcac
    27061 cctgcattac atggatagac atcgccgtct gaccatcttt aaaggtggtg aaatcctgag
    27121 cgcgggccac cggaatagtg gtattacgcg gaatcacttt ctccaccagg ccgcccatcg
    27181 tttcgaggcc cagcgacagt gggatcacat caagcagcag catttcgctg tccggcttgt
    27241 tacccaccag aatatccgcc tgaatcgccg cgccaatagc gacgacttta tccgggtcga
    27301 tggaagtcag cggtggacga ccgaaaaatt cgcctacccg ttcacgcacc agcggcacgc
    27361 gagtagaacc gccaaccatc accacttcca gcacttcatc agcttctacg cccgcgtctt
    27421 tcagcgcacg acgacaagcc agtaaggttc gttttaccag tggcgcgatc agttcattga
    27481 attgttcacg gctgatttcg ccctgccagc ccgcaacgtt aacggtcacg gagtccgcat
    27541 cgctcagcgc gattttggct gcaatggcgg catccagcag ttcacgctga acgcggttat
    27601 cgctacgatc aggaatgtcc gcctgctcgc gaatgtaatc cgccagcaga tggtcgaaat
    27661 catcgccgcc gagcgcggaa tcaccgccgg ttgccagcac ttcaaacacg ccgcgactta
    27721 agcgcagaat ggaaatatca aacgtcccgc caccgaggtc ataaacggcg atcacgcctt
    27781 cctgaccgga atccagcccg taggcgatag ccgcagcggt cggttcgtta agtaagcgca
    27841 gaacatgcaa ccccgccaga cgcgccgcgt ctttggtgcc ctgacgctgg gcatcgtcaa
    27901 agtacgccgg aacggtgata acgacaccat ccagctcgcc tgccagggct tcagttgccc
    27961 gcgccgccag tgctttgagg atgtccgcag aaacgcgcac cgggttcagc agccccgccg
    28021 ccgtttcaat cattggcagg ccgttttcgc tggcctggaa ttgataaggc aaatgcggat
    28081 agcgttgctg gatatcagcc agcgagcgtc ccatcaggcg tttaacagaa ctaatggtgt
    28141 tggcggtatc gagcgctgcg ttagtacgcg cgtcataacc caccgaatgc ccttgctgtt
    28201 gatagtgaac aacagatggc agcaggtgac ggccttcatg gtcggctaac gtttcggcct
    28261 gaccgctgcg cactgtcgct accagcgagt tggttgtgcc caggtcaata ccggccgcca
    28321 gacgacgctg atgcggcgca gcactcaaac caggttcact aatttgtaat aaggccatgt
    28381 ttagcttcca gaaattaaaa atcgagcagt ttttcttcga gttgttcggc actgcttcgc
    28441 agtttatcga gaaaacgcag cttacgcacg gtatccgccg ccgcgtccca cgtctcgttg
    28501 tctaactgtt caaccatcaa ctgatggcgg gtatcaaaca tctttttcac acgtttgata
    28561 aagctttcca gccgcgcttc atctttcgcc tgttcgatct cgtccagttc ttcgcgcagc
    28621 tccagctgtt ccatcaggaa cgcggtgtcg cgcacagtat gctgctcgct ggcgagatca
    28681 aaaccgtgca aagaaagcaa atattccgcg cgcattaacg gatgacgcag cgtttgccag
    28741 gcctggttaa tggttgcaga ttgctgtacg gcggcgagtt gttccgcctg gcttccgctg
    28801 gcgaatttat caggatgata ctgacgttgt agatcctgaa aacgcaggct cagtgcctgg
    28861 gtatcgagtt gataacgggc aggcaagcca aagagggtga agtaatccat aacattctca
    28921 gggctgcgat ccgccgcgat aacggcgaat caggtaaaac aaaccccacg cgcaggcgac
    28981 cacggtgggg ttatcggtat gcgcatcaaa cgtggaagct ttcgccgcaa ccacactcat
    29041 ctttaacgtt cgggttggtg aatttaaacc cttcattcag gccttctttt acgaagtcca
    29101 gctgcgtacc gtccagaaat tgcaggcttt tgccatcgac cacgactttc acgcctttgt
    29161 cttcaaacac gatgtcttcc ggcgtcggtt cgtcaacaaa ttccagtaca taagccatac
    29221 ctgaacatcc ggaggttctc acgcccagac gcaggccaaa ccctttgccg cggttagcca
    29281 gaaaggtatt tactcgcgct gctgcactgt cgctcagtgt aatcgacata accaaacctc
    29341 aactcttatt ttgcttcacg tttgctttta tagtccgcaa tggcggcttt gatcgcgtct
    29401 tctgccagaa tagaacagtg aattttcacc ggcggcagtt caagttcttc agcaatatcg
    29461 gtgtttttga tcgcctgcgc ttcgacgaga gacttccctt tcacccattc ggtgaccagg
    29521 gagctggaag cgatagcaga accgcagccg taagttttaa aacgcgcgtc ttcaatgata
    29581 ccttcatcgt tgactttaat ctgcaacttc atcacgtcgc cacaggccgg tgcacccacc
    29641 atgccgctgc cgacgttctc gtcgttgttg tcaaaggaac ccacgttacg cggattctcg
    29701 taatggtcga taactttttc gctgtaagcc attataaatt ctcctgattc cgataccgat
    29761 taatgatgag cccattcgat gctgttcaga tccacgccct gcttgtacat ttcccacagc
    29821 ggagaaaggt cacgcagacg accgatggat ttacgaacta actcgatggt gtagtcgatc
    29881 tcttcttcag tagtaaaacg acctaaagag aaacggatag agctatgtgc cagctcgtcg
    29941 ttcagcccca gcgcgcgcag cacgtaggac ggttcgaggc ttgctgacgt acaggcggaa
    30001 cctgaagaaa ctgcgaggtc tttcagcgcc ataatcagcg actcaccttc aacgtagttg
    30061 aagctgacgt tgagaatgtt cggcgcaccg tgttccaggt caccgttcag gtaaacttct
    30121 tcgatatctt tgatgccgtt ccacagacgg ttacgcaggc cgcgcagacg ttccatctcg
    30181 gtcgccatct cttcttttgc gatgcgatag gcctcgccca ttccgacgat ctggtgaaca
    30241 ggcagagtgc cggaacgcat accgcgctcg tgaccgccgc cgtgcatttg cgcttcgatg
    30301 cgtacgcgcg gtttacgacg tacatacagc gcaccgatac ctttcgggcc atagattttg
    30361 tgaccggaga aagacatcag gtcaactttc aactggctca ggtcgatagg cagtttgccc
    30421 acgctctggg ttgcatcaac gtgatagata atgccacgag cacggcacat ttcgccgata
    30481 gccgcgatat cctgcaccac gccgatttcg ttatttacgt gcatgatgga aacaaggatg
    30541 gtgtcgtcac gcatcgctgc ttcaagttct ttcaggtcga taatgccgtt acgctgcggt
    30601 gccaggtagg tgacttcaaa accttcgcgc tccagctgac ggcaggtatc cagtaccgct
    30661 ttgtgttcgg ttttgctagt gatgatgtgc ttgccttttt tctgataaaa gttggctgca
    30721 cctttgatcg ccaggttgtc agattcggtt gcaccagagg taaagacgat ttcacgcgga
    30781 tcagcgccga ccagatcggc tatctgatta cgggcgatat ctaccgcttc ttcagcctgc
    30841 cagccgaaac ggtgagaacg agaggccggg ttaccaaagg ttccgtccat cgtcatgaac
    30901 tgcatcattt tctcggcaac acgcgggtcc accggcgtgg ttgcggagta gtcgagataa
    30961 atcggtaatt tcattgctct ataaactccg tacatcactc aatgcaagga atcaggctac
    31021 cggctggatg tacgaccgtg tttacggagt atttagcact ccggcctgat tctgaattct
    31081 ttttattaag cgcgtaactt aacgtcgatc gcgtcttgtg tgcgggtgcg tggcgcgtcg
    31141 tgagtatgct gacgaccaga cacatccagc acttcctggt tattaaccag ttcgcctaaa
    31201 gtaatgttgt tgagaaaacc ggtgagacgg tcgctcaaat cacgccacag cgcgtgggtc
    31261 aggcatttat cgccgccctg gcagccgcct ttaccctgac aacgggtggc atctacagat
    31321 tcgtcaacgg cgctaatcac ttcgccaacg gcgatgctgc tggcatcttt gcctaacaga
    31381 taaccaccgc ctggtccacg tacgctggaa accagaccat ttttacgcag acgggaaaac
    31441 agttgttcca gataagaaag ggaaatgccc tgacgttcgg aaatatcagc caacggtacc
    31501 gggcccgctt cagagttgag cgcaacgtca agcattgcgg tcacggcata gcgcccttta
    31561 gatgtcagtc tcatgtctta cttcacctca aactcgcccc tgcccggggt tttttattgt
    31621 aaaagtgggg gtattgaata gcagggtcaa gtctgacatt cccgagtaaa ttggtcaact
    31681 atttacttga ctgatttagt cgggtattta accttcagtg ccattttttt atcgtggcgt
    31741 ttgtacctgt tgtcggatgc ggtgtgaaca ccttatccga cctacggttc tgtacattgt
    31801 aggcctgata agacgcgtta agcgtcgcat caggcaacta ctgttattcg gccttgttac
    31861 ctttattctg ctgctcaata gaagccagaa tcccgcgcag gatattcaat tcctggcttt
    31921 ccgggcgcgc acgggtaaac agacggcgca atttattcat cacctgcccc ggatggtttt
    31981 cacggataaa accggttgcc agcagcgttt gttccagatg accataaaaa cgctccagat
    32041 catcgaccag cggatacggc gtctcttcat gctcgacctg ctcgccgttt tcctgagttg
    32101 ccagccaggc catgcgcact tcataggcaa taacctgaac cgccatcgcc aggttcagcg
    32161 agctgtattc cgggttagcc gcaatcgcga catgataatg gcatttctgc aactcttcat
    32221 tggtcaagcc gacgcgctcg cgaccaaaca ccagcgccac cggggtattt gccgcttcag
    32281 cgacgctttt caggccgcat tcgcgcgggt cgagcatcgg ccatggcagc gtgcgggaac
    32341 gtgcgctggt gcccaccacc aagctacaac cggctaacgc ttcgtcgagc gtatcgacga
    32401 tgtgagcatt accaatcaca tcgctggccc ctgctgccag ggcaatcgcc tgggagtcgg
    32461 gtttcaccag tggattaacc agccacagat tggttaatcc cattgttttc atggcacggg
    32521 caacagaacc catattgccg gtgtgtgacg tctccaccag cacaattcga atattttgca
    32581 gcattgtctt tcttcatcta aagattattc acgcatctta tcataaaacg aagacagatg
    32641 ccgatctcgc tgctatactc tgcgccgttt tcccgttctt taacatccag tgagagagac
    32701 cgatgcatcc gatgctgaac atcgccgtgc gcgcagcgcg caaggcgggt aatttaattg
    32761 ccaaaaacta tgaaaccccg gacgctgtag aagcgagcca gaaaggcagt aacgatttcg
    32821 tgaccaacgt agataaagct gccgaagcgg tgattatcga cacgattcgt aaatcttacc
    32881 cacagcacac catcatcacc gaagaaagcg gtgaacttga aggtactgat caggatgttc
    32941 aatgggttat cgatccactg gatggtacta ccaactttat caaacgtctg ccgcacttcg
    33001 cggtatctat cgccgttcgt atcaaaggcc gcaccgaagt tgctgtggta tacgatccta
    33061 tgcgtaacga actgttcacc gccactcgcg gtcagggcgc acagctgaac ggctaccgtc
    33121 tgcgcggtag caccgctcgc gatctcgacg gtaccattct ggcgaccggc ttcccgttca
    33181 aagcaaaaca gtacgccact acctacatca acatcgtcgg caaactgttc aacgaatgtg
    33241 cagacttccg tcgtaccggt tctgcggcgc tggatctggc ttacgtcgct gcgggtcgtg
    33301 ttgacggttt ctttgaaatc ggtctgcgtc cgtgggattt cgcggcaggc gagctgctgg
    33361 ttcgtgaagc gggcggcatc gtcagcgact tcaccggtgg tcataactat atgctgaccg
    33421 gtaacatcgt tgctggtaac ccgcgtgttg tgaaagccat gctggcgaac atgcgtgatg
    33481 agttaagcga cgctctgaag cgttaatgac tcaggcgggt gatgtcactc acccgccctc
    33541 gcctttcagg cgctattccg aaatacttcc tcaccgcttt actttctttc gtcactctcc
    33601 caccatcttt ccccgattaa tggatgataa agaagtcaca aggaaaggtt atggcgctgc
    33661 cagtgaacaa acgcgttctc aaaattctgt ttattctctt tgttgttgcc ttctgcgttt
    33721 atttagtgcc gcgcgttgcc atcaacttct tctattatcc tgacgataaa atttacggtc
    33781 ccgacccctg gtcggcggaa tccgtcgaat ttacggctaa ggacggtact cgtctgcaag
    33841 gctggtttat tccttcttcg acgggccctg ctgacaatgc catcgcaacc atcattcatg
    33901 ctcacggcaa tgccggaaat atgtccgccc actggccgct ggtcagttgg ttacccgagc
    33961 gtaatttcaa cgtttttatg tttgattatc gcgggtttgg taaatcaaaa ggcacgccgt
    34021 cccaggccgg attgctggac gatacgcaaa gtgccatcaa tgtggtgcgc catcgcagtg
    34081 atgtaaaccc acaacggctg gtgctgttcg ggcagagtat tggcggggcg aatattcttg
    34141 ctgttattgg tcaggatgat cgtgaaggca tacgtgcggt gatcctcgac tccacatttg
    34201 cctcttatgc aaccatcgcc aatcagatga tccccggcag tggctactta cttgatgaga
    34261 gttacagcgg cgaaaattat atcgccagcg tcagcccgat cccgctttta ctcattcacg
    34321 gtaaagctga tcacgttatc ccatggcagc acagcgaaaa gttgtatagc ctggcaaaag
    34381 agacaaaacg gttgatccta atcccggatg gcgaacacat tgatgctttt tccgatcgtc
    34441 acggcgatgt ttatcgcgaa cagatggtgg actttatcct tagcgcgttg aatccgcaga
    34501 actaacccat gatcgctagc acgataatca ttcacaaaac caccttaaga catgctaatc
    34561 cactggtcag aacagtttaa gatgagaaaa attctgtgac gcttgccaac atttctgatg
    34621 attagcattc ccttcgccat ttacctgagc aaactttagc tattcttatc aattatgctt
    34681 atgggagatc tacagatgat gcctacgctt gctccaccat ctgtcctttc ggctccccag
    34741 cgccgctgcc agatcttgct gacgctcttt cagccggggt tgaccgccac catggcaacc
    34801 ttcagcgagc ttaatggtgt ggatgatgat attgccagtc ttgatatcag cgaaacagga
    34861 cgggagatcc tgcgctatca tcaactcaca ctgacgactg gttatgacgg tagctaccgg
    34921 gttgaaggta cagtgcttaa ccaacgtttg tgtttatttc actggctacg acgtggtttc
    34981 cgtctgtgtc cgtcatttat taccagccaa ttcacccccg ccctgaagag tgaactgaag
    35041 cggcgcggaa ttgcgcgtaa cttttacgac gataccaatc tacaagcgtt agtgaatctc
    35101 tgctcccgac ggctgcaaaa acgctttgaa acgcgcgata ttcatttcct gtgtctgtat
    35161 ctgcaatatt gtttgctgca acaccacgct ggaattacgc ctcagtttaa tccgctccaa
    35221 cgtcgctggg cggaatcctg ccttgaattt caggtagcgc aggaaattgg acgccactgg
    35281 cagcgtcggg cgctccagcc tgtaccgcct gatgagccac tgtttatggc attacttttt
    35341 tccatgttgc gggttcccga tccattgcgt gatgcgcatc agcgagacag acaattgcgt
    35401 cagtctatca aacgtctggt aaaccatttt cgtgagctgg gaaatgttcg tttttatgat
    35461 gaacaggggt tatgcgatca gctttatacc cacctcgccc aggcgttaaa tcgcagtttg
    35521 tttgccatcg gtattgataa taccctgcca gaagagttcg ccagactgta cccacgcctg
    35581 gtgcgcacca cccgcgcggc gctggccgga tttgaaagtg aatacggcgt ccatctttct
    35641 gatgaggaaa gtggtctggt cgcggtgatt ttcggtgcct ggctaatgca ggaaaacgat
    35701 ctgcatgaaa aacagattat tcttcttacc gggaatgata gcgagcgaga agcgcagatt
    35761 gagcagcagt tacgcgaact aacgttactg ccgctcaaca ttaaacatat gtcggtaaag
    35821 gcatttttgc agacaggcgc tccgcgcggc gcggcactga ttattgcgcc ttataccatg
    35881 ccgttaccgc tcttttcacc accgctgatc tatacggacc tgacactgac aacacatcaa
    35941 caggagcaga tccgcaaaat gctcgaatca gcatgaggga acaactttcg ggcgcaaaaa
    36001 cattgccgga agcgccacca gcgccattac ccagaacacg ccgtggccca gatattgata
    36061 caggaaaccg gcgaaaacgg tcatgatagc tatactgccg cccatcgcga cggcagagta
    36121 aaccgcctgt aaacggatga cttcgctacc ctggcgagcg gcaatatagc gcatggcggc
    36181 caggtggcag accgtgaagg cgccgcaatg cagaatttgc accactatca accacggcaa
    36241 cgccgtagtt gctcccataa tgccccagcg cactacgccg caaatcgccg agatcaacag
    36301 catatcgcgt gcactacaac ggcggaaaag tttattactc agcgcaaaga taatgacttc
    36361 cgccaccacg cccagcgacc acaaataccc caccgccgag gccgagtagc cagctgcctg
    36421 ccagtaaatg gcgctaaaac cgtaataggc cgcatgtgcc ccctgcaata aacaaacgca
    36481 ggccagaaag cgccagttct gaagaaccag cgccaaccac gctgaccaac cggtgctctc
    36541 ctgctggcgg cttgcccctt gtggctgaat cgtcggacgg atgagaaagc cgagcagcat
    36601 agatgccacg cccaatgtta acagcgcgag gatcacctga taatcaaaca tagtgaccag
    36661 tttgcccgtc agcgccgagc caatgacaaa cgccaccgag ccccacagtc gcactttgcc
    36721 gtaatcaagc gggaactgct tttgccacgt attcgccagt gcatcggtca acggtaccag
    36781 cggtgagaaa aagaggttaa agccaatcat caccagcatc agccacgcta cgtgcgcccc
    36841 cgcccagaag gcgacagcaa agagaagtgt catcattgcc agcacgcgca aggcggaaat
    36901 caggcgagaa ggatcgctga cgcggggcgc gatgagcaaa ctcccgagaa aacgggcaac
    36961 cagacctgcc cccaataaca ggccgatggt ttctggcgtt aaaccaatcc ctttaagcca
    37021 gacgctccag aaaggtagaa aaatgccgta actaaaaaag tatgtgaaat agccgagcgc
    37081 caaccagcgc gtggattgca aaaccatgag tccctcccgt caggaggcgt tagtctgggg
    37141 ttaatcgaat gttggtgcaa gttgaaaaat aagaatattc gagcctgctt cccgatgtct
    37201 gtaacgccag ttcacaagca ctaaaaaact gcgatccgcg acgcatgttg caaaaataat
    37261 gcgtaattat gccgttacgc ttgccaaacg ttcctgcaca atggcgatga aatcgcgtaa
    37321 tgccggcttc atctcccctt tcttccacgc catcagtaaa gcaatggaag gcacatttcc
    37381 ggcaatggga cgaaaaacaa cctgtccggt attaaaatta ttcatataac cgggtatcaa
    37441 agtgacgccc agccccatgc ccaccagatt catggtcacc agaatattcg ttgccacctg
    37501 gacgatattt ggctggctgt tttcttgcgc aaaccacgct ttaacgatcg gcgcaagcga
    37561 accggaatac gccggatcgg tactgacgaa attcacgcca tccagttgcg cggcggtgat
    37621 ctctttttca tgtgctaaag ggtgatcaac cggtaacaca accactaatg gttcgtcaaa
    37681 aagctccaga taatcaatct ccgggctata aacaggatgg cgcattaagc cgacgtcgag
    37741 ttcaccacgg cgaatttttt cctcctgttg cgtggtgatt aaactcacca gctcaatcaa
    37801 ggtgtctggc tgtctgagac gaaacatcgg taatactttt ggcagtaaat tcacttccgc
    37861 cgatggcaca aagccaatgg ttaattgtct gtcttcctga acagttttcc gcgcccgtaa
    37921 tttggcattt tccgcttgtt cgaggattgc cagcgcgtcc tggagaaaac attctcccgc
    37981 cgccgtcaac gcgactttgc gcttatccct caccagtaac ggaacaccga cacagttttc
    38041 aagatcgcgg atctggctgc ttaacgaagg ctgtgaggta tgcagttttt ccgccgcacg
    38101 ggtaaagttc agtgcctgcg ccactgcgac gaaatagcgt aaatgccgta gttccatcac
    38161 cttccccttg ttatcgaaaa aacgtctcag ctggtagaaa ttaactattt cacatattag
    38221 caaccaacca gcaacatcct tatggcacaa aaatagaagg tcaatacatc ttatctttca
    38281 ggattaaaaa atatgaccac accctcagat ttgaacattt accaactgat tgacacccaa
    38341 aatggtcggg tcactccgcg tatttatacc gacccggata tttaccaact ggagcttgag
    38401 cgtattttcg gtcgttgctg gctatttctc gcccacgaaa gccagatccc aaaacccggt
    38461 gatttcttta acacctacat gggagaagat gcggttgtcg tagtgcgtca gaaagacggc
    38521 agcatcaagg cgtttctcaa ccaatgccgc caccgggcca tgcgtgtgag ttatgcagat
    38581 tgcggcaaca ctcgcgcctt tacctgcccg tatcacggct ggtcttatgg cattaacggc
    38641 gagttgatcg atgtaccgct ggaacctcgc gcctacccac aagggttgtg taaatcccac
    38701 tgggggctaa acgaagttcc ttgtgtggag agttataaag ggctgatttt tggcaactgg
    38761 gataccagcg caccgggcct gcgtgattac cttggtgaca ttgcctggta tctggatggc
    38821 atgctggatc gtcgcgaagg cggcaccgaa attgtcggcg gcgtacaaaa gtgggtgatc
    38881 aactgtaact ggaaatcccc ggcagagcag ttcgccagtg accaatatca tgctctgttc
    38941 agccatgctt ctgccgttca ggtattaggg gcgaaagatg atggcagcga taagcgtctc
    39001 ggtgatggac aaaccgcccg cccggtgtgg gaaaccgcca aagatgcgct gcaatttggt
    39061 caggacggtc acggtagcgg tttcttcttt actgaaaaac cggatgctaa tgtctgggtc
    39121 gatggcgcgg tttccagcta ttaccgcgaa acctatgccg aagcagaaca acgtttaggt
    39181 gaagttcgcg ccctgcgcct ggcgggtcat aacaatatat tccccacgct ttcatggcta
    39241 aacggcactg ccacactccg cgtctggcat ccgcgcggcc ctgatcaagt tgaagtgtgg
    39301 gcgttctgta ttactgacaa agccgcctcc gatgaagtta aagccgcttt tgaaaacagc
    39361 gccactcgtg cttttggtcc tgctggtttt ctcgagcagg atgactcgga gaactggtgt
    39421 gaaatccaga aattgcttaa aggccaccgc gcccgcaaca gcaaactgtg tctggaaatg
    39481 gggcttggtc aggaaaagcg ccgcgacgac ggcattcctg gcattactaa ctatatcttt
    39541 tcagaaactg ccgctcgtgg aatgtaccaa cgctgggccg atcttctgag tagcgaaagc
    39601 tggcaggaag tgctcgataa aaccgccgct taccagcagg aggtgatgaa atgagtgcgc
    39661 aagtttcact agagttacat ctccgcatta gccagtttct ctttcacgaa gccagcttac
    39721 tggacgactg gaaatttcgt gactggctgg cgcagctcga cgaagagatt cgttacacca
    39781 tgcgcaccac agttaacgcg caaacacgcg accgccgcaa aggcgtccag ccaccgacaa
    39841 cctggatttt taatgacacc aaagaccagc tggagcggcg aatcgcccgt ctggaaacgg
    39901 gcatggcctg ggcagaagag ccgccgtcac gcacccgtca cttaatcagc aactgccaga
    39961 taagcgaaac cgacatccca aacgtatttg ctgtgcgggt aaattatctg ctttatcagg
    40021 cacaaaaaga gcgcgatgaa acattctatg ttggaacgcg tttcgacaaa gttcgccgtc
    40081 tggaagatga caactggcgc ttgctggaac gggatatcgt cctggatcaa gcggtaatca
    40141 cttcccataa cctgagtgta ctgttctgat gaatcgaatt tatgcgtgtc ccgttgcgga
    40201 tgtgccggag ggtgaggctc tccggatcga tacctcgccc gtcatcgccc tgttcaacgt
    40261 tggcggcgag ttttatgcca ttaacgatcg ttgcagccat ggtaatgcgt cgatgtcaga
    40321 agggtatctg gaagatgacg ccacggtgga gtgcccgcta cacgccgcca gtttttgcct
    40381 gaaaacgggg aaagcgttat gcctgcccgc caccgatccg ctcaccactt atccagtaca
    40441 cgttgaaggt agtgacattt tcatcgactt accggaggcg cagccatgag cgatctgcat
    40501 aacgagtcca tttttattac cggcggcgga tcgggattag ggctggcgct ggtcgagcga
    40561 tttatcgaag aaggcgcgca ggttgccacg ctggaactgt cggcggcaaa agtcgccagt
    40621 ctgcgtcagc gatttggcga acatattctg gcggtggaag gtaacgtgac ctgttatgcc
    40681 gattatcaac gcgcggtcga tcagatcctg actcgttccg gcaagctgga ttgttttatc
    40741 ggcaatgcag gcatctggga tcacaatgcc tcactggtta atactcccgc agagacgctc
    40801 gaaaccggct tccacgagct gtttaacgtc aacgtactcg gttacctgct gggcgcaaaa
    40861 gcctgcgctc cggcgttaat cgccagtgaa ggcagcatga ttttcacact gtcaaatgcc
    40921 gcctggtatc ctggcggcgg tggcccgctg tacaccgcca gtaaacatgc cgcaaccgga
    40981 cttattcgcc aactggctta tgaactggca ccgaaagtgc gggtgaatgg cgtcggcccg
    41041 tgtggtatgg ccagcgacct gcgcggccca caggcgctcg ggcaaagtga aacctcgata
    41101 atgcagtctc tgacgccgga gaaaattgcc gccattttac cgctgcaatt tttcccgcaa
    41161 ccggcggatt ttacggggcc gtatgtgatg ttggcatcgc ggcgcaataa tcgcgcatta
    41221 agcggtgtga tgatcaacgc tgatgcgggt ttagcgattc gcggcattcg ccacgtagcg
    41281 gctgggctgg atctttaagg aagcacgatg aaagaaaaaa cgatcattat tgtcggtggc
    41341 gtgcaagcgg cggcaatggc tgcggcctcg ctacgccagc aagggttcac cggtgagctg
    41401 catctgtttt ccgatgagcg acatcttcct tatgaacgac ctccactctc gaaatccatg
    41461 ttgctggaag attccccgca gttacagcag gtgttacccg ctaactggtg gcaggaaaac
    41521 aatgttcatc tgcattccgg tgtaaccatc aaaacgctgg gtcgcgacac acgagagtta
    41581 gtgttaacca acggcgaaag ctggcactgg gatcagcttt ttatagcaac cggcgcggca
    41641 gctcgaccgc tgccgttgct tgatgcactg ggagaacgct gctttaccct acgccatgcc
    41701 ggtgatgccg ccagactgcg agaagttctg cagcccgaac ggtcagtcgt gattgtcggt
    41761 gccggaacta ttggtctgga actggctgcc agcgccacgc agcgcagcgc agcgcagcgc
    41821 agatgtaagg tgacagtgat tgaactggcg gcaaccgtca tgggccgtaa tgcaccaccg
    41881 cccgtgcaac gctatctttt acagcgccac cagcaggctg gtgtgcgcat tctgctcaat
    41941 aatgccattg aacatgtagt cgatggtgaa aaagtagaac tgacgctgca aagtggggaa
    42001 acgcttcagg ctgatgtggt gatttacggt attggtatca gcgccaacga gcaactggct
    42061 cgcgaggcca accttgatac tgccaatggc attgtcattg atgaggcttg ccgcacctgc
    42121 gatcccgcga tctttgccgg tggcgatgtg gcaatcactc gtcttgataa tggtgcacta
    42181 caccgctgtg aaagctggga aaacgccaat aaccaggcgc aaattgccgc tgccgcaatg
    42241 ttagggctac cgctaccgct actgccgtgg ttctggagcg atcagtacag tgataactta
    42301 cagtttattg gcgatatgcg tggcgatgac tgaggtagcc tgagtttaac ggacactcct
    42361 tcctgaaata gaatggcatc a
//
LOCUS       DADMJB010000011        40982 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.011, whole genome shotgun sequence.
ACCESSION   DADMJB010000011 DADMJB010000000
VERSION     DADMJB010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 40982)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40982)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40982
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.011"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..334)
                     /locus_tag="JN078_000579"
     CDS             complement(<1..334)
                     /locus_tag="JN078_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1266 domain-containing protein"
                     /protein_id="HAY9039888.1"
                     /translation="MNKEEQYLLFALSAPMEILNQGCKPAHDSPKMYTGIKEFDLSSS
                     WGINNRDDLIQTIYQMTDDGHANDLAGLYLTWHRSSPEEWKALIAGGSERGLIYTQFV
                     AQTAMCCGE"
     gene            complement(415..1842)
                     /locus_tag="JN078_000580"
     CDS             complement(415..1842)
                     /locus_tag="JN078_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HAY9039889.1"
                     /translation="MKNCWKILDIEETTDVDIIRRAYLALLPSFHPETEPQGFKQLRQ
                     AYEEALRIAQSPAKSVWQPEEYEVAEHEILLAFRALLASDSERFLPSAWQRFIQQLNY
                     CSMEEIDELRWSLCTIAMNTAHLSFECVVLLAERLRWLQEENVGEIDEEELESFLYAI
                     AKGNVFNFQTILHLPVAVQNDTIDFYQMFARIWSSHPEWLTLYLAQHRAVIIPDDAKL
                     HRNLLRWYSAGRLDIPELLDYARSWREAEPDNEDARYYEYAQRVYCGEGESLLAELCD
                     YWREYPSTQADALILQWCRQHRVDYYPLVVMMIEARELVNDQGKQLLYVPGDSARTRF
                     HLYEILSDEKLSALGRSLVEMVLHKGRKPRISLTRDTEHLLWPLYLVAKQLVQASQPT
                     EESLMPIVSRLDAEDRCPLEALIIRRLLIQAANFTEKQTVEPEPQPQPMPVDDGGPGC
                     LGVIKIIFYIFIFAGLIGKILHLFG"
     gene            complement(1839..2546)
                     /locus_tag="JN078_000581"
     CDS             complement(1839..2546)
                     /locus_tag="JN078_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1266 domain-containing protein"
                     /protein_id="HAY9039890.1"
                     /translation="MDMGSQKILFALSTPMEIRNECCLPSHSSPKMYLGTCFFDLSSS
                     WGIDDRDDLLRTIHRMIENGHAARLAGFYHRWFRYSPCEWRDYLAELNEQGQAYAQFV
                     ASTAECCGEGGIKAWDYVRMGFLSRMGVLNNWLSEEESLWIQSRIHLRALRYYSNWRQ
                     YFAGYTFGRQYWQSPEDDHLPLLREFLARKEYDDSGNDMFYQLFASDDAYYPTLSWQP
                     LADYPTCPETLKDMSDL"
     gene            2709..3686
                     /locus_tag="JN078_000582"
     CDS             2709..3686
                     /locus_tag="JN078_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415177.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEL1-like repeat protein"
                     /protein_id="HAY9039891.1"
                     /translation="MIFTSSCCDNLSIDEIIERAEKGDCEAQYIVGFYYNRDSAIDSP
                     DDEKAFYWLKLAAEQGHCEAQYSLGQKYTEDKSRHKDNEHAIFWLKKTALQGHTFASN
                     ALGWILDRGEDPNYKEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYK
                     QAALQGHSDAQNNLADLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGE
                     GVDQDYKQAMYWYLKAAAQESVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECNDA
                     TAWYNLAIMYHYGEGRPVDLRQALDLYRKVQSSGTRDVSQEIRETEDLL"
     gene            complement(3756..4238)
                     /locus_tag="JN078_000583"
     CDS             complement(3756..4238)
                     /locus_tag="JN078_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon-containing protein"
                     /protein_id="HAY9039892.1"
                     /translation="MNKVAQYYRELVASLSERLRNGERDIDALVEQARERVIKTGELT
                     RTEVDELTRAVRRDLEEFAMSYEESLKEESDSVFMRVIKESLWQELADITDKTQLEWR
                     EVFQDLNHHGVYHSGEVVGLGNLVCEKCHFHLPIYTPEVLTLCPKCGHDQFQRRPFEP
                     "
     gene            4473..7055
                     /gene="leuS"
                     /locus_tag="JN078_000584"
     CDS             4473..7055
                     /gene="leuS"
                     /locus_tag="JN078_000584"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008456064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HAY9039893.1"
                     /translation="MQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYP
                     SGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTY
                     DNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCP
                     NDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKS
                     MQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNP
                     ELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGA
                     VMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDH
                     EAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQL
                     PVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYARYTCPEY
                     KEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQ
                     GMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSK
                     NNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTA
                     KGDVAALNVDALTEDQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP
                     TDGEQDRALMQEALLAVVRMLNPFTPHICFTLWQELKGEGDIDNAPWPVADEKAMVED
                     STLVVVQVNGKVRAKITVPVDATEEQVRERAGQEHLVAKYLDGVTVRKVIYVPGKLLN
                     LVVG"
     gene            7070..7651
                     /gene="lptE"
                     /locus_tag="JN078_000585"
     CDS             7070..7651
                     /gene="lptE"
                     /locus_tag="JN078_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HAY9039894.1"
                     /translation="MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPN
                     GPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSIAKDTASVFRNGQTAEYQMIM
                     TVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLP
                     SIRAADIRSDEEQTSTTTDTPATPARVSTTLGN"
     gene            7651..8682
                     /gene="holA"
                     /locus_tag="JN078_000586"
     CDS             7651..8682
                     /gene="holA"
                     /locus_tag="JN078_000586"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HAY9039895.1"
                     /translation="MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAA
                     QGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTG
                     LLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNL
                     ELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWV
                     DALLMGKSKRTLHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKH
                     RVWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHK
                     PLADVFIDG"
     gene            8684..9325
                     /gene="nadD"
                     /locus_tag="JN078_000587"
     CDS             8684..9325
                     /gene="nadD"
                     /locus_tag="JN078_000587"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HAY9039896.1"
                     /translation="MKSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP
                     HRPQPEANSVQRKHMLELAIANKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPL
                     AFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNQED
                     LHLQPAGKIYLAETPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLYR"
     gene            9349..9959
                     /locus_tag="JN078_000588"
                     /pseudo
     CDS             9349..9959
                     /locus_tag="JN078_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415171.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin/alpha-ribazole phosphatase"
     gene            10219..10536
                     /gene="rsfS"
                     /locus_tag="JN078_000589"
                     /gene_synonym="rsfA"
     CDS             10219..10536
                     /gene="rsfS"
                     /locus_tag="JN078_000589"
                     /gene_synonym="rsfA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308702.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HAY9039897.1"
                     /translation="MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTS
                     SRHVMSIADHVVQESRAAGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEK
                     LWS"
     gene            10540..11007
                     /gene="rlmH"
                     /locus_tag="JN078_000590"
     CDS             10540..11007
                     /gene="rlmH"
                     /locus_tag="JN078_000590"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010618862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HAY9039898.1"
                     /translation="MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRG
                     KNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLI
                     GGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE"
     gene            11038..12939
                     /gene="mrdA"
                     /locus_tag="JN078_000591"
     CDS             11038..12939
                     /gene="mrdA"
                     /locus_tag="JN078_000591"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-transpeptidase MrdA"
                     /protein_id="HAY9039899.1"
                     /translation="MKLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQI
                     VRFTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTL
                     DALRSVVDLTDDDIAAFRKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG
                     YKRRYYPYGSALTHVIGYVSKINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVL
                     HGQTGYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVT
                     DPRTGGVLALVSTPSYDPNLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKP
                     YVAVSALSAGVITRNTTLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTRSLEESADTFF
                     YQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIP
                     VGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIH
                     SGYWELAKDGMYGVANRPNGTTHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAE
                     RLRDHKLMTAFAPYNNPQVAVAMILENGGAGPAVGTLMRQILDHIMLGDNNTDLPAEN
                     PAVAAAEDH"
     gene            12942..14054
                     /gene="mrdB"
                     /locus_tag="JN078_000592"
                     /gene_synonym="rodA"
     CDS             12942..14054
                     /gene="mrdB"
                     /locus_tag="JN078_000592"
                     /gene_synonym="rodA"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004885876.1"
                     /note="rod shape-determining protein RodA; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase MrdB"
                     /protein_id="HAY9039900.1"
                     /translation="MTDNPNKKTFWDKVHLDPTMLLILLALLVYSALVIWSASGQDIG
                     MMERKIGQIAMGLVIMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRW
                     LDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTGIALVLIFMPTLLVAAQPDL
                     GTSILVALSGLFVLFLSGLSWRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPE
                     SDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVG
                     ILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGV
                     PLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV"
     gene            14065..15153
                     /gene="rlpA"
                     /locus_tag="JN078_000593"
     CDS             14065..15153
                     /gene="rlpA"
                     /locus_tag="JN078_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic peptidoglycan transglycosylase RlpA"
                     /protein_id="HAY9039901.1"
                     /translation="MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEIS
                     GADPRFEPLNATANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFD
                     PTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSN
                     NTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILP
                     VSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPA
                     MVTPQAASQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGP
                     FASKAEASTLQQRLQTEAQLQSFITTAQ"
     gene            15293..16504
                     /gene="dacA"
                     /locus_tag="JN078_000594"
     CDS             15293..16504
                     /gene="dacA"
                     /locus_tag="JN078_000594"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase DacA"
                     /protein_id="HAY9039902.1"
                     /translation="MNTIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQI
                     DAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGN
                     DAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVG
                     LMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFT
                     FNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKG
                     REAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDMYLTIPRGRM
                     KDLKASYVLNSSELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFFGKIID
                     YIKLMFHHWFG"
     gene            16615..16878
                     /locus_tag="JN078_000595"
     CDS             16615..16878
                     /locus_tag="JN078_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HAY9039903.1"
                     /translation="MKTKLNELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYT
                     PTVKPSSKGNYHSVSITINATHIEQVEILYEELGKIDIVRMVL"
     gene            16979..17620
                     /gene="lipB"
                     /locus_tag="JN078_000596"
     CDS             16979..17620
                     /gene="lipB"
                     /locus_tag="JN078_000596"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415163.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HAY9039904.1"
                     /translation="MYQDKILVRQLGLQPYEPISQAMHEFTDTRDDSTLDEIWLVEHY
                     PVFTQGQAGKAEHILMPGDIPVIQSDRGGQVTYHGPGQQVMYVLLNLKRRKLGVRELV
                     TLLEQTVVNTLAELGIEAHPRADAPGVYVGEKKICSLGLRIRRGCSFHGLALNVNMDL
                     SPFLRINPCGYAGMEMAKISQWKPEATTNNIAPRLLENILALLNNPDFEYITA"
     gene            17879..18832
                     /locus_tag="JN078_000597"
     CDS             17879..18832
                     /locus_tag="JN078_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415162.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator"
                     /protein_id="HAY9039905.1"
                     /translation="MDSNNQIEPCLSRKSSEGKPQIFTTLRNIALNLLTIFEAVYVHK
                     GIVNAAKVLNLPPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLES
                     ILGALDIEGSYDKQRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQL
                     SQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLLSLEDDRETIDNAAHVLLL
                     PEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPSRFYNLFSRCWP
                     LEKLPFPSLNKEQIDFSIHYNKFSLRDPILHGVIDVIRNAF"
     gene            19041..20006
                     /gene="lipA"
                     /locus_tag="JN078_000598"
     CDS             19041..20006
                     /gene="lipA"
                     /locus_tag="JN078_000598"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HAY9039906.1"
                     /translation="MSKPIVMERGVKYRDADKMALIPVKNVAIEREALLRKPEWMKIK
                     LPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCD
                     VAHGRPVAPDANEPVKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKS
                     PQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLL
                     ERFKEAHPEIPTKSGLMVGLGETNEEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQ
                     RYVSPDEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK"
     gene            complement(20107..20310)
                     /gene="tatE"
                     /locus_tag="JN078_000599"
     CDS             complement(20107..20310)
                     /gene="tatE"
                     /locus_tag="JN078_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatE"
                     /protein_id="HAY9039907.1"
                     /translation="MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMN
                     DDDAAAKKGADVDLQAEKLSHKE"
     gene            complement(20439..21227)
                     /locus_tag="JN078_000600"
     CDS             complement(20439..21227)
                     /locus_tag="JN078_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deaminated glutathione amidase"
                     /protein_id="HAY9039908.1"
                     /translation="MLVAAGQFAVTSVWEKNAEICASLMAQAAENDVSLFVLPEALLA
                     RDDHDADLSVKSAQLLEGEFLGRLRRESKRNMMTTILTIHVPSTPGRAWNMLVALQAG
                     NIVARYAKLHLYDAFAIQESRRVDAGNEIAPLLEVEGMKVGLMTCYDLRFPELALAQA
                     LQGAEILVLPAAWVRGPLKEHHWSTLLAARALDTTCYMVAAGECGNKNIGQSRIIDPF
                     GVTIAAASEMPALIMAEVTPERVRQVRAQLPVLNNRRFAPPQLL"
     gene            21320..21703
                     /gene="crcB"
                     /locus_tag="JN078_000601"
     CDS             21320..21703
                     /gene="crcB"
                     /locus_tag="JN078_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HAY9039909.1"
                     /translation="MLQLLLAVFIGGGTGSVARWLLSMRFNPLHQAIPLGTLTANLIG
                     AFIIGMGFAWFSRMTNIDPVWKVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLN
                     VFVNLLGSFAMTALAFWLFSASTAH"
     gene            complement(21758..21967)
                     /gene="cspE"
                     /locus_tag="JN078_000602"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
     CDS             complement(21758..21967)
                     /gene="cspE"
                     /locus_tag="JN078_000602"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002436076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator/RNA stability
                     regulator CspE"
                     /protein_id="HAY9039910.1"
                     /translation="MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTL
                     AEGQRVEFEITNGAKGPSAANVIAL"
     gene            complement(22142..22702)
                     /locus_tag="JN078_000603"
     CDS             complement(22142..22702)
                     /locus_tag="JN078_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid:lipid A palmitoyltransferase"
                     /protein_id="HAY9039911.1"
                     /translation="MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAPTWQQ
                     PEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDS
                     WNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGP
                     VTFQMTYIPGTYNNGNVYFAWMRFQF"
     gene            23291..24676
                     /gene="dcuC"
                     /locus_tag="JN078_000604"
     CDS             23291..24676
                     /gene="dcuC"
                     /locus_tag="JN078_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuC"
                     /protein_id="HAY9039912.1"
                     /translation="MLTFIELLIGVVVIVGVARYIIKGYSATGVLFVGGLLLLIISAI
                     MGHKVLPSSQASTGYSATDIVEYVKILLMSRGGDLGMMIMMLCGFAAYMTHIGANDMV
                     VKLASKPLQYINSPYLLMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGISRG
                     AAAAICASPAAIILAPTSGDVVLAAQASEMSLIDFAFKTTLPISIAAIIGMAIAHFFW
                     QRYLDKKEHISHEMLDVSEITTTAPAFYAILPFTPIIGVLIFDGKWGPQLHIITILVI
                     CMLIASILEFLRSFNTQKVFSGLEVAYRGMADAFANVVMLLVAAGVFAQGLSTIGFIQ
                     SLISIATSFGSASIILMLVLVILTMLAAVTTGSGNAPFYAFVEMIPKLAHSSGINPAY
                     LTIPMLQASNLGRTLSPVSGVVVAVAGMAKISPFEVVKRTSVPVLVGLVIVIVATELM
                     VPGTAAAVTGK"
     gene            complement(24717..25397)
                     /gene="dpiA"
                     /locus_tag="JN078_000605"
                     /gene_synonym="citB"
     CDS             complement(24717..25397)
                     /gene="dpiA"
                     /locus_tag="JN078_000605"
                     /gene_synonym="citB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator DpiA"
                     /protein_id="HAY9039913.1"
                     /translation="MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARM
                     MIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVF
                     DYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGID
                     PLTLNAVRKLFKEPGVQHTAETVAQALTISRTSARRYLEYCASRHLIIAEIVHGKVGR
                     PQRIYHSG"
     gene            complement(25366..27023)
                     /gene="dpiB"
                     /locus_tag="JN078_000606"
                     /pseudo
     CDS             complement(25366..27023)
                     /gene="dpiB"
                     /locus_tag="JN078_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308685.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase DpiB"
     gene            27372..28430
                     /gene="citC"
                     /locus_tag="JN078_000607"
     CDS             27372..28430
                     /gene="citC"
                     /locus_tag="JN078_000607"
                     /EC_number="6.2.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415151.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[citrate (pro-3S)-lyase] ligase"
                     /protein_id="HAY9039914.1"
                     /translation="MFGNDIFTRVKRSENKKMAEIAQFLHENDLSVDTTVEVFITVTR
                     DEKLIACGGIAGNIIKCVAISESVRGEGLALTLATELINLAYERHSTHLFIYTKTEYE
                     ALFRQCGFSTLTSVPGVMVLMENSATRLKRYAESLKKFRHPGNKIGCIVMNANPFTNG
                     HRYLIQQAAAQCDWLHLFLVKEDSSRFPYEDRLDLVLKGTADIPRLTVHRGSEYIISR
                     ATFPCYFIKEQSVINHCYTEIDLKIFRQYLAPALGVTHRFVGTEPFCRVTAQYNQDMR
                     YWLKTPTISAPPIELVEIERLRYQEMPISASRVRQLLAKNDLTAIAPLVPAVTLHYLQ
                     NLLEHSRQDAAARQKTPA"
     gene            28445..28741
                     /gene="citD"
                     /locus_tag="JN078_000608"
     CDS             28445..28741
                     /gene="citD"
                     /locus_tag="JN078_000608"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase acyl carrier protein"
                     /protein_id="HAY9039915.1"
                     /translation="MKINQPAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGDA
                     IRTTILDVLARYNVRGVQLNVDDKGTLDCILRARLEALLARASGIPTLPWEDCQ"
     gene            28738..29646
                     /gene="citE"
                     /locus_tag="JN078_000609"
     CDS             28738..29646
                     /gene="citE"
                     /locus_tag="JN078_000609"
                     /EC_number="4.1.3.34"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415149.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (pro-3S)-lyase subunit beta"
                     /protein_id="HAY9039916.1"
                     /translation="MISASLQQRKTRTRRSMLFVPGANAAMVSNSFIYPADALMFDLE
                     DSVALREKDTARRMVYHALQHPLYRDIETIVRVNALDSEWGVNDLEAVVRGGADVVRL
                     PKTDTAQDVLDIEKEILRIEKACGREPGSTGLLAAIESPLGITRAVEIAHASERLIGI
                     ALGAEDYVRNLRTERSPEGTELLFARCSILQAARSAGIQAFDTVYSDANNEAGFLQEA
                     AHIKQLGFDGKSLINPRQIDLLHNLYAPTQKEVDHARRVVEAAEAAAREGLGVVSLNG
                     KMVDGPVIDRARLVLSRAELSGIREE"
     gene            29657..31189
                     /gene="citF"
                     /locus_tag="JN078_000610"
     CDS             29657..31189
                     /gene="citF"
                     /locus_tag="JN078_000610"
                     /EC_number="2.8.3.10"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase subunit alpha"
                     /protein_id="HAY9039917.1"
                     /translation="MTQKIEQSQRQERVAAWNRRAECDLAAFQNSPKQTYQAEKARDR
                     KLCANLEEAIHRSGLQDGMTVSFHHAFRGGDLTVNMVMDVIAKMGFKNLTLASSSLSD
                     CHAPLVEHIRQGVVTRIYTSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSGELNI
                     DVAFLGVPSCDEFGNANGYTGKACCGSLGYAMVDADNAKQVVMLTEELLPYPHNPASI
                     EQEQVDLIVKVDRVGDAAKIGAGATRMTTNPRELLIARSAADVIVNSGYFKEGFSMQT
                     GTGGASLAVTRFLEDKMRSRDIRADFALGGITATMVDLHEKGLIRKLLDVQSFDSHAA
                     QSLARNPNHIEISANQYANWGSKGASVDRLDVVVLSALEIDTQFNVNVLTGSDGVLRG
                     ASGGHCDTAIASALSIIVAPLVRGRIPTLVDNVLTCITPGSSVDILVTDHGIAVNPAR
                     PELAERLQEAGIKVVSIEWLRERARLLTGEPQPIEFTDRVVAVVRYRDGSVIDVVHQV
                     KE"
     gene            31193..31743
                     /gene="citX"
                     /locus_tag="JN078_000611"
                     /pseudo
     CDS             31193..31743
                     /gene="citX"
                     /locus_tag="JN078_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308680.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase holo-[acyl-carrier protein]
                     synthase"
     gene            31718..32566
                     /gene="citG"
                     /locus_tag="JN078_000612"
     CDS             31718..32566
                     /gene="citG"
                     /locus_tag="JN078_000612"
                     /EC_number="2.4.2.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004981262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triphosphoribosyl-dephospho-CoA synthase CitG"
                     /protein_id="HAY9039918.1"
                     /translation="MSMPATSTKTTKLATSLIDEYALLGWRAMLTEVNLSPKPGLVDR
                     INCGAHKDMALEDFHRSALAIQGWLPRFIEFGACSAEMAPEAVLHGLRPIGMACKGDM
                     FRATAGVNTHKGSIFSLGLLCAAIGRLLQLNQSLTPTTVCSTAASFCRGLTDRELRTN
                     NSQLTAGQRLYQQLALTGARGEAEAGYPLVINHALPHYLTLLDQGLDPELALLDTLLL
                     LMAINGDTNVASRGGEGACAGYSARRKHYCKKGAFEPPPISIISGSSTGSVSNEISVQ
                     AAVPTS"
     gene            32646..34109
                     /gene="citT"
                     /locus_tag="JN078_000613"
     CDS             32646..34109
                     /gene="citT"
                     /locus_tag="JN078_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/succinate antiporter CitT"
                     /protein_id="HAY9039919.1"
                     /translation="MSLAKDNIWKLLAPLVVMGVMFLIPVPNGMPPQAWHYFAVFVAM
                     IVGMILEPIPATAISFIAVTICVIGSNYLLFDAKELADPAFNAQKQALKWGLAGFSST
                     TVWLVFGAFIFALGYEVSGLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNT
                     ARTGGTVFPVIKNLPPLFKSFPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVL
                     GLEFVSKIAGIQISWLQWFLCFLPVGVILLIIAPWLSYVLYKPEITHSEEVATWAGDE
                     LKTMGALTRREWTLIGLVLLSLGLWVFGSEVINATAVGLLAVSLMLALHVVPWKDITR
                     YNSAWNTLVNLATLVVMANGLTRSGFIDWFAGTMSTHLEGFSPNATVIVLVLVFYFAH
                     YLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYATGPGVIIY
                     GCGYVKSKDYWRLGAIFGVIYISMLLLVGWPILAMWN"
     gene            34220..35026
                     /gene="rna"
                     /locus_tag="JN078_000614"
     CDS             34220..35026
                     /gene="rna"
                     /locus_tag="JN078_000614"
                     /EC_number="4.6.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease I"
                     /protein_id="HAY9039920.1"
                     /translation="MKEFWRNAALLAVSLLPFSSANAVALQAKQYGDFDRYVLALSWQ
                     TGFCQSQHDRNRNERDECRLQTETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFG
                     CATRPIPNLPEAHASRMCSSPETGLSLETAAKLSEVMPGAGGRSCLERYEYAKHGACF
                     GFDPDAYFGTMVRLNQEIKESEAGKFLADNYGKTVSRRDFDAAFAKSRGKENVKAVKL
                     TCQGNPAYLTEIQISIKADAINAPLSANSFLPQPHPSNCGKTFVIDKVGY"
     gene            35256..35666
                     /gene="rnk"
                     /locus_tag="JN078_000615"
     CDS             35256..35666
                     /gene="rnk"
                     /locus_tag="JN078_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside diphosphate kinase regulator"
                     /protein_id="HAY9039921.1"
                     /translation="MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMC
                     SPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLR
                     VGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL"
     gene            complement(35897..37135)
                     /locus_tag="JN078_000616"
     CDS             complement(35897..37135)
                     /locus_tag="JN078_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent formaldehyde
                     dehydrogenase"
                     /protein_id="HAY9039922.1"
                     /translation="MKALTYHGPHHVQVENVPDPGIEQADDIILRITATAICGSDLHL
                     YRGKIPQVKHGDIFGHEFMGEVVETGKDVKNLQKGDRVVIPFVIACGDCFFCRMQQYA
                     ACENTNAGKGAALNKKQIPAPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPLL
                     SDDKALFLSDILPTAWQAAKNAQIQQGSSVAVYGAGPVGLLTIACARLLGAEQIFVVD
                     HHPYRLSFAADRYGAIPINFDEDSDPAQSIIEQTAGHRGVDAVIDAVGFEAKGSTTET
                     VLTNLKLEGSSGKALRQCIAAVRRGGIVSVPGVYAGFIHGFLFGDAFDKGLTFKMGQT
                     HVHAWLGELLPLIEKGLLKPEEIVTHYMPFEEAARGYEIFEKREEECRKVILVPGAQS
                     AEEAQKAVSGLVNAMPGGTI"
     gene            37356..37784
                     /gene="uspG"
                     /locus_tag="JN078_000617"
     CDS             37356..37784
                     /gene="uspG"
                     /locus_tag="JN078_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspG"
                     /protein_id="HAY9039923.1"
                     /translation="MYKTIIMPVDVFEMELSDKAVRHAEFLTQDDGVIHLLHVLPGSA
                     SLSLDRFAADVRRFEEHLQHEAEERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAE
                     ELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVVR"
     gene            complement(37905..39470)
                     /gene="ahpF"
                     /locus_tag="JN078_000618"
     CDS             complement(37905..39470)
                     /gene="ahpF"
                     /locus_tag="JN078_000618"
                     /EC_number="1.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415139.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase subunit F"
                     /protein_id="HAY9039924.1"
                     /translation="MLDTNMKTQLKAYLEKLTKPVELIATLDDSAKSAEIKELLAEIA
                     ELSDKVTFKEDNSLPVRKPSFLITNLGSNQGPRFAGSPLGHEFTSLVLALLWTGGHPS
                     KEAQSLLEQIRHIDGDFEFETYYSLSCHNCPDVVQALNLMSVLNPRIKHTAIDGGTFQ
                     NEITDRNVMGVPAVFVNGKEFGQGRMTLTEIVAKIDTGAEKRAAEELNKRDAYDVLIV
                     GSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVH
                     VDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGE
                     DQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA
                     DQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG
                     LLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKAS
                     LSAFDYLIRTKTA"
     gene            complement(39641..40204)
                     /gene="ahpC"
                     /locus_tag="JN078_000619"
     CDS             complement(39641..40204)
                     /gene="ahpC"
                     /locus_tag="JN078_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003858764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase subunit C"
                     /protein_id="HAY9039925.1"
                     /translation="MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFT
                     FVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTG
                     ALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAS
                     HPGEVCPAKWKEGEATLAPSLDLVGKI"
     gene            40516..>40982
                     /gene="dsbG"
                     /locus_tag="JN078_000620"
     CDS             40516..>40982
                     /gene="dsbG"
                     /locus_tag="JN078_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706462.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbG"
                     /protein_id="HAY9039926.1"
                     /translation="MTVIGYAFYSTFALTEKDKLMLKKILLLALLPAIAFAEELPAPV
                     KAIEKQGITIIKTFDAPGGMKGYLGKYQDMGVTIYLTPDGKHAISGYMYNEKGENLSN
                     TLIEKEIYAPAGREMWQRMEQSHWLLDGKKDAPVIVYVFADPFCPYCKQFWQQA"
BASE COUNT        10183 a        10480 c        10070 g        10249 t
ORIGIN      
        1 cttccccaca gcacatagcg gtttgggcaa cgaattgggt ataaatcaac cctctctccg
       61 agccaccagc aattaatgct ttccactctt caggggaaga gcgatgccat gtcagatata
      121 agccagctaa atcattggca tgaccatcat cagtcatctg ataaatagtc tgaattaaat
      181 catcacgatt atttattccc caggatgatg agagatcgaa ttcttttata ccggtataca
      241 tttttggcga gtcatgcgcg ggtttgcaac cctgattaag tatttccatg ggcgcagaaa
      301 gcgcaaaaag aagatattgt tcttccttat tcatttgtta ataatccctt aagtgcatta
      361 actgactact tttttatatt acttgccggg ctttccgcac attaacgtcg actgtcaccc
      421 gaacagatgg agtattttcc ctatcaaacc ggcaaagata aaaatgtaga aaataatttt
      481 gatgacgccc agacagcccg gcccaccatc gtcaacgggc attggctgcg gttgcggctc
      541 cggttcaaca gtttgcttct cggtaaaatt cgccgcctga attaataatc gacgaataat
      601 taatgcttcc agtggacaac gatcttctgc atcaagacgg cttacgatcg gcattaatga
      661 ttcttctgtc ggttggctgg cctgcactaa ttgtttggca actaaatata atggccataa
      721 gagatgttct gtatcacgcg tgagtgagat ccgcggctta cgtcctttgt gcaaaaccat
      781 ctcgaccagt gaacgcccca gcgcagagag tttttcatcg ctgagtattt cgtataaatg
      841 aaaacgcgta cgggcgctgt cgccggggac ataaagtagc tgtttaccct gatcgttaac
      901 cagttcacga gcttcaatca tcatcaccac taacgggtaa taatcgaccc gatgctgacg
      961 gcaccattgc aatattaaag catccgcctg ggtggaggga tactcgcgcc agtagtcaca
     1021 aagttctgcc agcaagcttt cgccttctcc acaatagacg cgttgcgcgt attcataata
     1081 acgcgcatct tcattatcag gttcagcttc ccgccacgac cgggcgtaat ccagaagttc
     1141 ggggatatcc aggcgacctg cgctatacca gcggagtaaa tttctgtgca gttttgcatc
     1201 atcggggatg atcactgcgc gatgttgcgc taaatacaat gtcagccatt ctggatgcga
     1261 tgaccaaatc cgagcgaaca tttggtaaaa atcgatggtg tcattttgca cggcaacggg
     1321 cagatgcaga atggtctgga agttaaaaac attccccttc gcaatggcat ataaaaagga
     1381 ttccagttct tcttcgtcta tttccccgac gttttcctcc tgcaaccacc gcaatctttc
     1441 tgctaataac accacgcact cgaaggataa atgggcagtg ttcatggcga ttgtgcacag
     1501 cgaccagcgt aattcatcaa tctcttccat cgagcaataa tttaattgct gaatgaatcg
     1561 ctgccaggcg gagggcagaa aacgttcgct atcagaggca agtaacgcgc gaaaggcgag
     1621 cagaatttca tgttctgcta cctcatattc ttctggttgc caaacagatt tagcaggcga
     1681 ctgcgcaatc cgtagcgcct cctcatacgc ctgacgaagt tgtttaaaac cctgcggttc
     1741 ggtttctgga tgaaaggacg gtaacagcgc cagataagcg cggcggataa tatcgacgtc
     1801 agtcgtttcc tctatatcga ggatcttcca gcaatttttc ataagtcgct catatcctta
     1861 agcgtttccg ggcatgtggg gtagtcagcc agtggttgcc aggacaaggt agggtaatac
     1921 gcatcatcac tggcaaataa ttgataaaac atatcattgc cggaatcgtc gtattcttta
     1981 cgcgctaaga attcgcgtaa taaaggcaga tgatcatctt cgggagactg ccaatattgc
     2041 cgaccaaagg tataaccggc aaagtattgc cgccagttac tataataacg tagagcccgt
     2101 agatgaatac gcgactggat ccatagactt tcttcttcac tcaaccagtt attaagtacg
     2161 cccattcgac ttaaaaaacc catccggaca taatcccatg ctttaattcc tccctcacca
     2221 cagcattcgg ctgtgctggc gacaaattgc gcataagcct gaccttgctc atttaattca
     2281 gcaagatagt cacgccattc acatggagaa taacgaaacc agcggtgata aaaccctgcc
     2341 aaccgagcgg catgaccgtt ctcgatcatt cggtgaattg tgcgcagcag gtcatcacgg
     2401 tcatcaattc cccatgagga agaaaggtca aaaaagcatg tacctaaata cattttgggg
     2461 gatgaatgcg aaggtaaaca gcattcattg cgtatttcca tcggagtgga aagtgcaaac
     2521 aatatttttt gcgaccccat gtccatataa tttatcctta aacattcatt taatgaatgt
     2581 aaactacatt tcgagactca gttatttata cttttctgac gcgacataat acgcataaaa
     2641 taaggcttac gcaaaaatgg aacacataaa atataatatg ttttatctac aaccataagg
     2701 aaatgataat gatttttacg tcaagttgct gcgataattt atcaatagat gagattatcg
     2761 aacgtgctga aaaaggcgat tgcgaggctc aatatattgt tgggttttat tataatcgcg
     2821 atagcgcaat tgactctccg gacgacgaaa aggcctttta ctggctgaag ctggccgccg
     2881 agcaaggtca ttgtgaagca caatattcct taggacaaaa gtatactgag gataaaagcc
     2941 gtcataaaga taatgagcat gccatctttt ggctgaaaaa aactgcccta caaggccata
     3001 ctttcgcttc caacgccctt ggctggatac tggatcgtgg agaagacccc aattataaag
     3061 aagcggttgt ctggtatcag atagccgcgg agagcggaat gtcttatgcg caaaataatc
     3121 ttgggtggat gtacagaaat ggcaacggag tcgcaaaaga ctatgcgctg gcatttttct
     3181 ggtacaaaca agctgcatta caaggccata gtgacgcgca aaacaatctg gccgatcttt
     3241 atgaagacgg aaaaggcgtt gctcaaaaca agacactcgc cgcattctgg tatttgaaaa
     3301 gcgcacagca gggtaatcgg cacgcccagt ttcaaattgc atgggattat aacgctggcg
     3361 aaggggtgga ccaggactat aagcaagcga tgtactggta tctgaaggct gccgctcagg
     3421 aaagcgtcgg cgcttacgtc aacatcggtt atatgtataa acacggacaa ggcgttgaga
     3481 aagattatca ggctgccttt gaatggttta cgaaagccgc tgaatgcaat gacgccactg
     3541 cctggtataa cctggccatt atgtatcact acggagaagg aagacctgtc gatctccgac
     3601 aggctctcga cctgtatcgt aaagttcagt catccggaac cagagatgtc agtcaggaaa
     3661 ttcgtgagac tgaagattta ctgtagagat aaaaacaagg gccggggaat ttcattcggc
     3721 ccatattctc tttattgctg tgcgaaatca gactattacg gctcaaacgg gcgtctctgg
     3781 aactggtcat gaccacattt cgggcatagc gtcagcactt ccggtgtgta gatcgggaga
     3841 tggaagtgac atttctcgca gaccagattt cccagcccga ccacttctcc gctgtgataa
     3901 accccatgat gattgaggtc ctggaaaact tcgcgccatt caagctgcgt tttatcggtg
     3961 atatctgcca gctcctgcca taagctttct ttaatcaccc gcataaagac gctgtcagat
     4021 tcttctttca ggctctcttc atagctcatg gcgaactctt ccaggtcacg tcttacagct
     4081 cgcgtcagct catcgacctc ggttcgcgtt aactcccctg tttttattac gcgctcgcgc
     4141 gcctgttcca ccagtgcgtc gatatcacgt tcgccattgc gcaggcgttc gctcagtgac
     4201 gcgaccagtt cacggtaata ttgagcaacc ttgttcatcg tttcatctcc cgggtcgtta
     4261 actgactata ataatagacg ttctttgttc cttgctttgc taatacgccc acaaactctg
     4321 taaattaatg tatgaataat ccgggcatca tttcaacgtc gagtgcgcga aaggctgttt
     4381 tgacgcggac gtttgggcta tgctatgcgg atctgaaaaa ccacctcaac gctacatttg
     4441 tagccgtatt gaaaacagga ccactggctg ccatgcaaga gcaataccgc ccggaagaga
     4501 tagaatccaa agtacagctt cattgggatg agaagcgcac atttgaagta accgaagacg
     4561 agagcaaaga gaagtattac tgcctgtcta tgcttcccta tccttctggt cgactacaca
     4621 tgggccacgt acgtaactac accatcggtg acgtgatcgc ccgctaccag cgtatgctgg
     4681 gcaaaaacgt cctgcagccg atcggctggg acgcgtttgg tctgcctgcg gaaggcgcgg
     4741 cggtgaaaaa caacaccgct ccggcaccgt ggacgtacga caacatcgcg tatatgaaaa
     4801 accagctcaa aatgctgggc tttggttatg actggagccg cgagctggca acctgtacgc
     4861 cggaatacta ccgttgggaa cagaaattct tcaccgagct gtataaaaaa ggcctggtat
     4921 ataagaagac ttctgcggtc aactggtgcc cgaacgacca gaccgtactg gcgaacgaac
     4981 aagttatcga cggctgctgc tggcgctgcg ataccaaagt tgaacgtaaa gagatcccgc
     5041 agtggtttat caaaatcact gcttacgctg acgagctgct caacgatctg gataaactgg
     5101 atcactggcc agacaccgtt aaaagcatgc agcgtaactg gatcggtcgt tccgaaggcg
     5161 tggagatcac cttcaacgtt aacgactatg acaacacgct gaccgtttac actacccgcc
     5221 cggacacctt tatgggttgt acctacctgg cggtagctgc gggtcatccg ctggcgcaga
     5281 aagcggcgga aaataatcct gaactggcgg cctttattga cgaatgccgt aacaccaaag
     5341 ttgccgaagc tgaaatggcg acgatggaga aaaaaggcgt cgatactggc tttaaagctg
     5401 ttcacccatt aacgggcgaa gaaattcccg tttgggcagc aaacttcgta ttgatggagt
     5461 acggcacggg cgcagttatg gcggttccgg gtcacgacca gcgcgactac gagtttgcct
     5521 ctaaatacgg cctgaacatc aaaccagtta tcctggctgc tgacggctct gagccagatc
     5581 tttctcagca agccctgact gaaaaaggcg tgctgttcaa ctctggcgaa ttcaacggtc
     5641 ttgaccatga agcggccttc aacgccatcg ccgataaact gactgcgatg ggcgttggcg
     5701 agcgtaaagt gaactaccgc ctgcgcgact ggggtgtttc tcgtcagcgt tactggggcg
     5761 cgccgattcc gatggtgacg ctggaagacg gtaccgtaat gccgaccccg gacgaccagc
     5821 tgccggtgat cctgccggaa gatgtggtga tggacggcat taccagcccg attaaagcag
     5881 atccggagtg ggcaaaaact accgttaacg gtatgccagc gctgcgtgaa accgacactt
     5941 tcgacacctt tatggagtcc tcctggtact atgcgcgcta cacttgccca gagtacaaag
     6001 aaggtatgct ggattccgaa gcggctaact actggctgcc ggtggatatc tacattggtg
     6061 gtatcgaaca cgccattatg cacctgctct acttccgctt cttccacaaa ctgatgcgtg
     6121 atgcaggcat ggtgaactct gacgaaccag cgaaacagtt gctgtgtcag ggtatggtgc
     6181 tggcagatgc cttctactat gttggcgaaa acggcgaacg taactgggtt tccccggttg
     6241 atgctatcgt tgaacgtgac gagaaaggcc gtatcgtgaa agcgaaagat gcggcaggcc
     6301 atgaactggt ttataccggc atgagcaaaa tgtccaagtc gaagaacaac ggtatcgacc
     6361 cacaggtgat ggttgaacgt tacggcgcgg acaccgttcg tctgtttatg atgtttgctt
     6421 ctccggctga tatgactcta gaatggcagg aatccggtgt ggaaggggct aaccgcttcc
     6481 tgaaacgtgt ctggaaactg gtttacgagc acacagcaaa aggtgatgtt gcggcactga
     6541 acgttgatgc gctgactgaa gatcagaaag cgctgcgtcg cgatgtgcat aaaacgatcg
     6601 ctaaagtgac cgatgatatc ggccgtcgtc agaccttcaa caccgcaatt gcggcgatta
     6661 tggagctgat gaacaaactg gcgaaagcac caaccgatgg cgagcaggat cgcgctctga
     6721 tgcaggaagc gctgctggcc gttgtccgta tgcttaaccc gttcaccccg cacatctgct
     6781 tcacgctgtg gcaggaactg aaaggcgaag gcgatatcga caacgcgccg tggccggttg
     6841 ctgacgaaaa agcgatggtg gaagactcca cgctggtcgt ggtgcaggtt aacggtaaag
     6901 tccgtgccaa aatcaccgtt ccggtggacg caacggaaga acaggttcgc gaacgtgctg
     6961 gccaagaaca tctggtagca aaatatcttg atggcgttac cgtgcgtaaa gtgatttacg
     7021 taccaggtaa actcctcaat ctggtcgttg gctaagcgcg ggaggaagcg tgcgatatct
     7081 ggcaacattg ttgttatctc tggcggtgtt aatcaccgcc gggtgtggct ggcatctgcg
     7141 tgataccacg caggttcctt ccactatgaa ggtcatgatc ctggactcag gcgatccgaa
     7201 cgggccatta agccgtgcgg tgcgtaacca gttacgtctg aatggtgtcg agttgcttga
     7261 taaagaaacc acgcgtaagg acgttccatc cctgcgtttg ggtaaagtga gcatcgcgaa
     7321 agataccgca tcggtattcc gtaacggtca aacagcagag tatcagatga tcatgacggt
     7381 gaatgcgacc gtgttgatcc ccggccgtga tatctacccg attagcgcca aagtcttccg
     7441 ttcgttcttt gataacccgc aaatggcgtt agcgaaagat aacgaacaag acatgatcgt
     7501 aaaagagatg tacgaccgtg ctgccgaaca gctgattcgt aagctgccaa gcatccgtgc
     7561 tgcggatatt cgttccgacg aagaacagac gtcgaccaca acggatactc cggcaacgcc
     7621 tgcacgcgtc tccaccacgc tgggtaactg atgattcggt tgtacccgga acaactccgc
     7681 gcgcagctca atgaagggct gcgcgcggcg tatcttttac ttggtaacga tcctctgtta
     7741 ttgcaggaaa gccaggacgc tgttcgtcag gtagctgcgg cacaaggatt cgaagaacac
     7801 cacacttttt ccattgatcc caacactgac tggaatgcga tcttttcgtt atgccaggct
     7861 atgagtctgt ttgccagtcg acaaacgcta ttgctgttgt taccagaaaa cggaccgaat
     7921 gcggcgatca atgaacaact tctcacactc accggacttc tgcatgacga cctgctgttg
     7981 atcgtccgcg gtaataaatt aagcaaagcg caagaaaatg ccgcctggtt tactgcgctt
     8041 gcgaatcgca gcgtgcaggt gacctgtcag acaccggagc aggctcagct tccccgctgg
     8101 gttgctgcgc gcgcaaaaca gctcaactta gaactggatg acgcggcaaa tcaggtgctc
     8161 tgctactgtt atgaaggtaa cctgctggcg ctggctcagg cactggagcg tttatcgctg
     8221 ctctggccag acggcaaatt gacattaccg cgcgttgaac aggcggtgaa tgatgccgcg
     8281 catttcaccc cttttcattg ggttgatgct ttgttgatgg gaaaaagtaa gcgcacattg
     8341 catattcttc agcaactgcg tctggaaggc agcgaaccgg ttattttgtt gcgcacatta
     8401 caacgtgaac tgttgttact ggttaacctg aaacgccagt ctgcccatac gccactgcgt
     8461 gcgttgtttg ataagcatcg ggtatggcag aaccgccggg gcatgatggg cgaggcgtta
     8521 aatcgcttaa gtcagacgca gttacgtcag gccgtgcaac tcctgacacg aacggaactc
     8581 accctcaaac aagattacgg tcagtcagtg tgggcagagc tggaagggtt atctcttctg
     8641 ttgtgccata aacccctggc ggacgtattt atcgacggtt gatatgaaat ctttacaggc
     8701 tctgtttggc ggcacctttg atccggtgca ctatggtcat ctaaaacccg tggaaacgct
     8761 ggcgaatttg attggtctga cgcgggtcac aatcatccct aataatgttc ctccgcatcg
     8821 tccccagccg gaagcgaaca gcgtgcagcg taaacacatg cttgaactgg cgattgccaa
     8881 caagccatta tttactcttg atgaacgcga gctaaagcgc aatgccccct cttacactgc
     8941 gcaaacactg aaagagtggc ggcaggaaca aggaccggac gtgccgctgg cgtttattat
     9001 tggtcaggat tcactgctga cctttccgac ctggtacgaa tacgaaacga tactcgacaa
     9061 tgcacatttg atcgtctgtc ggcgtccagg ttacccactt gaaatggcgc aaccgcaata
     9121 ccagcaatgg ctggaagatc atttgacaca taaccaggaa gatcttcacc ttcagcctgc
     9181 cggtaaaatt tatctggctg aaacgccgtg gtttaacatc tcggcgacca tcatccgcga
     9241 acgtttgcaa aacggtgaat cgtgtgagga tttattgccg gaaccggtac tgacttacat
     9301 taaccaacaa ggcttgtatc gctgatacct gtcgttacgg agggcatgat gcgactgtgg
     9361 ttaattcgtc atggtgaaac gcaagcgaat atcgatggtc tttacagcgg tcatgcgccc
     9421 cccccctgac cgcgcgcggt attgagcaag cgcaaaatct gcatacgctg ctacatggtg
     9481 tttcctttga tctggtttta tgcagtgaac tggaacgggc acagcatacc gcgcgactgg
     9541 ttctcagtga ccgccagctc cccgtgcaaa tcatccctga actcaacgaa atgttttttg
     9601 gcgactggga gatgcgacat catcgcgacc tcatgcaaga agatgccgaa aactatagcg
     9661 cgtggtgcaa tgactggcag catgcaatcc ccacgaacgg tgaaggattt caggcatttt
     9721 cgcaacgtgt ggaacgcttt atcgcaaggc ttagtgaatt tcagcactat cagaatattt
     9781 tagtcgtcag ccatcagggt gtactgagtc tgttaatcgc ccgtttaatt ggcatgcctg
     9841 ccgaggctat gtggcatttt cgcgttgacc aggggtgttg gagcgccatt gatatcaacc
     9901 aaaaattcgc gacgctacgc gtcctcaata gccgtgccat cggggtcgat aatgcatgac
     9961 ttttctgttt ttttacgggt aagccgcaac gaccattgac agacccgggc aggctgatat
    10021 tctccgcagc cagacttttt tcgccagaca cgactttgta gaaattgttt tacaaaaatg
    10081 gcgatgcaat ctgcggcgcg gggtgggatg atagcccact ttcgaaagcc gattcggcga
    10141 caattgtccc gaaatcgcct ctggttcagg tatactgaca gaccattttt atctatttga
    10201 ttcacccagg gggaaaactt gcagggtaaa gcactccagg attttgttat cgacaaaatt
    10261 gatgacctca aaggtcagga catcatcgcc ttagacgttc aaggcaaatc cagcatcacc
    10321 gactgcatga tcatctgtac gggtacgtcc agccgtcatg ttatgtccat tgctgaccac
    10381 gttgtgcagg agtctcgcgc agcgggcctg ttaccgctcg gcgtagaagg tgaaaacagc
    10441 gccgactgga ttgtcgtgga tttgggcgat gtgattgtcc atgtcatgca ggaagagagc
    10501 cgtcgcctgt atgaactgga aaaactctgg agttaatgcg tgaagctgca acttgtcgcc
    10561 gtgggaacga aaatgccgga ctgggtacaa accggtttta ccgagtacct gcgtcgtttt
    10621 ccgaaagata tgcccttcga gctgattgaa attccggccg gaaaacgcgg caagaatgcg
    10681 gacatcaagc gcatactcga caaagagggt gagcagatgt tggcggccgc aggcaaaaac
    10741 cgcattgtca ccctcgatat tccaggcaag ccctgggata cgccgcagtt agccgctgag
    10801 ctggaacgct ggaagctgga tggtcgcgac gtcagtctac tgattggcgg gcctgaaggg
    10861 ttgtcgcctg cctgtaaagc ggcggcggag cagagctggt cgctgtcggc gcttaccctc
    10921 ccccatccgc tggttcgcgt gctggtcgca gagagtctgt accgggcgtg gagcatcacc
    10981 accaaccatc cttatcaccg tgagtgataa gggagctttg agtagaaaac gcagcggatg
    11041 aaactacaga actcttttcg cgactatacg gcagagtccg cgctgtttgt gcgccgggcg
    11101 ctggtcgcct ttttggggat tttgctgctg accggcgtgc ttatcgccaa cctgtataat
    11161 ctgcaaattg ttcgctttac cgactaccag acccgctcta atgaaaaccg cattaagctg
    11221 gtgcctatcg cgcccagccg cggcattatt tacgaccgta atggtatccc tctggccctc
    11281 aaccgcacta tctaccagat agaaatgatg ccagagaaag tcgataacgt gcagcaaacg
    11341 ctggacgctt tgcgcagcgt ggttgatctg accgatgacg atattgctgc attccgaaaa
    11401 gagcgcgcac gttcacaccg tttcacctct attcccgtga aaactaacct gaccgaagta
    11461 caagtagctc gctttgccgt caatcagtac cgttttccgg gggttgaagt taaaggctat
    11521 aaacgtcgtt actatcctta cggttcggcg ttgacccacg tcatcggcta tgtgtcgaaa
    11581 atcaacgata aagacgtcga acgcctgaat aatgacggca aactggccaa ctatgcggca
    11641 acgcatgata tcggtaagct gggcattgag cgttactatg aagacgtgct gcacggtcag
    11701 accggttatg aagaggttga agttaacaac cgtgggcgtg ttatccgcca gttaaaagaa
    11761 gtaccaccgc aagccggaca cgatatttac ctgacgctgg atctcaaact ccagcaatat
    11821 attgaaacgc tgctggcggg tagccgcgca gctgtggtag tcaccgatcc gcgtacaggt
    11881 ggggtgctgg cgctggtttc cacgcctagt tatgacccaa acttgtttgt tgacggtatc
    11941 tccagcaaag attattccgc cttgttgaac gacccgaata caccgctggt gaaccgcgcc
    12001 acacaggggg tttatcctcc cgcgtctaca gttaaaccct atgtggcggt ttcggcattg
    12061 agcgccgggg tgatcacgcg caatacgacg ctgtttgacc caggctggtg gcaactgcca
    12121 ggttcggaaa aacgttatcg tgactggaaa aaatggggcc acgggcgtct gaatgtcaca
    12181 agatcgctgg aagaatctgc ggataccttc ttctatcagg tggcctacga tatggggatc
    12241 gatcgcctct ccgaatggat gggtaaattc ggttatggtc attacaccgg tatcgacctg
    12301 gcggaagaac gttccggcaa catgcctacc cgcgaatgga aacagaaacg ctttaaaaaa
    12361 ccgtggtatc agggtgacac cattccggtt ggtatcggtc agggttactg gacagcgacc
    12421 ccaatccaga tgagtaaggc actgatgatc ctgattaatg acggtatcgt gaaggttccg
    12481 catttgctga tgagcaccgc cgaagacggc aaacaggtgc catgggtaca accgcatgaa
    12541 ccgcccgtcg gcgatattca ttccggttac tgggagctgg cgaaagacgg tatgtacggt
    12601 gttgctaacc gccctaacgg tacgacgcat aaatactttg ccagcgcacc gtacaaaatt
    12661 gcggcgaaat ctggtaccgc tcaggtcttc ggtctgaaag cgaacgaaac ctataatgcg
    12721 cacaaaattg ccgagcgttt acgtgaccac aaactgatga ccgcctttgc gccatacaac
    12781 aatccgcaag tggctgtcgc catgattctg gagaacggcg gcgcgggtcc ggcggttggt
    12841 acgctgatgc gtcagatcct cgaccacatt atgctgggtg ataacaacac cgatctgcct
    12901 gcggaaaatc cagcggttgc cgcagcggag gaccattaat catgacggat aatccgaata
    12961 aaaaaacatt ctgggataaa gtccatctcg atcccacaat gctgctgatc ttactggcat
    13021 tgctggttta cagcgcccta gttatctgga gcgccagcgg tcaggatatt ggcatgatgg
    13081 agcgtaaaat cggccaaatc gcgatgggtc tggtcatcat ggtggtgatg gcgcaaattc
    13141 ctccacgcgt ttatgaaggc tgggccccct atctctatat catctgtatt attttgctgg
    13201 tggcggtaga tgctttcggt gccatctcta aaggtgctca acgctggctg gacctcggta
    13261 ttgttcgttt tcagccgtcg gaaattgcca aaatagccgt accactgatg gttgcgcgct
    13321 ttatcaaccg cgacgtttgc ccaccgtcgt tgaagaacac aggcatcgcg ctggtgctga
    13381 tatttatgcc cacgctgctg gtggctgcac agcctgacct gggaacatca atcctcgttg
    13441 cgctttccgg tctgtttgta ctgttcctct ctggccttag ctggcgtctg attggcgtcg
    13501 cagtagtgct ggtggcggcg ttcattccta ttctgtggtt cttcctgatg catgattacc
    13561 agcgccagcg cgtaatgatg ctcctagacc cggaatcaga cccactcggc gcgggctatc
    13621 acattattca gtctaaaatt gctattggct ccggcggatt acgcggcaaa ggctggctgc
    13681 atggcactca gtcacaactt gaatttctac ccgaacgcca taccgacttt atcttcgcgg
    13741 tactggcgga agagctggga ttagtgggca ttttgattct gctcgctctc tacattctgc
    13801 tgatcatgcg cgggctgtgg atagccgcca gagcgcaaac cacctttggt cgcgtcatgg
    13861 ctggcggctt aatgctgata ttattcgttt atgtcttcgt aaatattggt atggtaagcg
    13921 gtattctgcc ggttgtaggg gttccgctcc cactggtcag ttatggagga tcagcgctaa
    13981 ttgtgctgat ggctgggttc gggattgtaa tgtcaatcca cacccacagg aaaatgttgt
    14041 cgaaaagcgt gtaagaggtg cgcaatgcgt aagcagtggc tcgggatctg catcgcggca
    14101 ggaatgctcg cggcatgtac aagcgatgat ggtcagcaac agacggtaag tgtaccgcag
    14161 cctgcggtat gtaacggccc catagttgaa attagcgggg cggacccgcg tttcgaacca
    14221 ctgaacgcga cggcaaatca ggattaccag cgcgacggta aaagctacaa aatcgtgcag
    14281 gatccgtctc gatttagcca ggcgggactg gcggcaatct atgatgccga accaggcagt
    14341 aacctgacgg cctctggcga agctttcgat ccgacacagc tgacggcggc ccatccaacg
    14401 cttccgatcc ccagctacgc cagaatcact aacctggcta acgggcgaat gatcgtggtg
    14461 cgcattaatg atcgcggccc ttacggcaac gaccgcgtta tttcgctttc tcgcgcggca
    14521 gctgaccgtc ttaacacgtc aaacaacacc aaagttcgta tcgatccgat tattgtcgcc
    14581 caggatggtt cgctttctgg tcctggtatg gcttgtacca cagtcgccaa acagacttac
    14641 gccctgcctg cacctcccga tttaagcggt ggcgcgggaa caagttcagt gtctggcccg
    14701 cagggtgaca ttcttccggt cagtaattcg acgctaaaaa gcgaagatcc gaccggcgcg
    14761 ccggtaacca gtagcggttt cctcggcgca ccaacgacct tagcgcctgg tgtactggaa
    14821 ggcagcgaac cgacgcctgc gccacagccc gttgttacag ctccgtcgac aacgcctgca
    14881 acctcgcctg caatggtgac accgcaagcc gcctcgcaaa gcgccagcgg caactttatg
    14941 gtgcaagtcg gggccgttag cgatcaggct cgtgcgcaac agtaccaaca gcaactggga
    15001 cagaagttcg gcgtccccgg tcgcgtaact caaaatggcg cggtctggcg gatccagctt
    15061 ggccccttcg ccagcaaagc cgaagccagt accttgcagc aacgtttgca aaccgaagcc
    15121 caattacagt catttattac caccgcgcag tagcgtaaag caggcatctg atgtgtcaat
    15181 ttctgtaaat gacgttaaca aagtcacgcg gaaagtcaga tgcctgccgg tagtgcattt
    15241 gctatagtag ggcacttttt ttaattccat cacggatgtc gtagttcaga ccatgaatac
    15301 cattttttcc gctcgtatca tgaagcgcct ggcgctcacc acggctcttt gcacagcctt
    15361 tatctctgct gcacatgccg atgacctgaa tatcaaaact atgatcccgg gtgtaccgca
    15421 gatcgatgcg gagtcctaca tcctgattga ctataactcc ggcaaagtgc tcgccgaaca
    15481 gaacgcagat gtccgccgcg atcctgccag cctgaccaaa atgatgacca gttacgttat
    15541 cggccaagca atgaaagccg gtaaatttaa agaaactgat ttagtcacta tcggcaacga
    15601 cgcatgggcc accggtaacc cggtgtttaa aggttcttcg ctgatgttcc tcaaaccggg
    15661 catgcaggtt ccggtttctc agctgatccg cggtattaac ctgcaatcgg gtaacgatgc
    15721 ttgtgtcgcc atggctgatt ttgccgctgg tagccaggac gcttttgttg gcttgatgaa
    15781 cagctacgtt aacgccctgg gcctgaaaaa cacccacttc cagacggtac atggtctgga
    15841 tgctgatggt cagtacagct ccgcgcgcga tatggcgctg atcggccagg cgttgatccg
    15901 tgacgtaccg aatgaatact cgatctataa agaaaaagaa tttacgttta acggtattcg
    15961 ccagctgaac cgtaacggcc tgttatggga taacagcctg aatgtcgacg gcatcaaaac
    16021 cggacacact gacaaagcag gttacaacct tgttgcttct gcgactgaag gccagatgcg
    16081 cttgatctct gcggtgatgg gcggacgtac ttttaaaggc cgtgaagccg aaagtaaaaa
    16141 actgctgacc tggggcttcc gtttcttcga aaccgttaac ccactgaaag taggtaaaga
    16201 gttcgcctct gaaccggttt ggtttggtga ttctgatcgc gcttcgttag gggttgataa
    16261 agacatgtac ctgaccattc cgcgtggtcg catgaaagat ctgaaagcca gctatgtgct
    16321 gaacagcagt gaattgcatg cgccgctgca aaagaatcag gtcgtcggaa ctatcaactt
    16381 ccagcttgat ggcaaaacga tcgagcaacg cccgctggtt gtgttgcaag aaatcccgga
    16441 aggtaacttc ttcggcaaaa tcattgatta cattaaatta atgttccatc actggtttgg
    16501 ttaaaaatta aacacttgaa agtgtaattt ccgtccccat atactaagca tcagtaaaaa
    16561 aactcccgcc ttctggcggg agttgctatt taattacgtt acgccggagc tgacatgaaa
    16621 accaaactta acgaactgct tgaattccct actcctttta cttacaaagt tatggggcag
    16681 gcgttacctg agctggttga tcaggtggtt gaagtggtac agcgccatgc gccaggtgac
    16741 tacaccccaa cggtaaaacc aagcagcaaa ggcaactacc actcggtatc tatcactatc
    16801 aacgccactc atatcgagca ggttgaaata ctgtatgaag aactgggcaa aatcgatatt
    16861 gtccgcatgg ttctgtaact cgcttctccg ttacccggct cctggtcggg taactcccct
    16921 ctcctcgctg tgatatactt ttcccccact tttactcatt ctccacggag atgccgtttt
    16981 gtatcaggat aaaattcttg tccgccagct cggtcttcag ccttacgagc caatctccca
    17041 ggctatgcat gaattcaccg atacccgcga tgatagtacc cttgatgaaa tctggctggt
    17101 cgagcactat ccggtattca cccaaggtca ggcaggaaaa gcggagcaca ttttaatgcc
    17161 gggtgatatt ccggtgatcc agagcgatcg cggtgggcag gtgacttatc acgggccggg
    17221 acaacaggtg atgtatgtgt tgcttaacct gaaacgccgt aaactcggtg tgcgtgaact
    17281 ggtgaccttg cttgagcaaa cagtggtgaa taccctggct gaactgggta tagaagcgca
    17341 tcctcgggct gacgcgcctg gtgtctatgt cggggaaaag aaaatttgct cactgggttt
    17401 acgaattcga cgcggttgtt cattccacgg tctggcatta aacgtcaata tggatctttc
    17461 accattttta cgtattaatc cttgtgggta tgccggaatg gaaatggcta aaatatcaca
    17521 atggaaaccc gaagcgacga ctaataatat tgctccacgt ttactggaaa atattttagc
    17581 gctactaaac aatccggact tcgaatatat taccgcttaa ttccatacat caatggccca
    17641 atttacactg ggtcattact cataatacct gctaatgctt tacatctcct tcgcgtttgt
    17701 atattttctt tatcacttgc agaaatgcgg tgccacgcct tgctccgtaa ctcaccccat
    17761 tgattaacct attgaaatag ttgattatgg tgagcaaaag cgttccgttc caattagaca
    17821 taagattatt gtaatttttt aaatattatt tttccatgaa taaaattgga gtaagtgcgt
    17881 ggatagtaat aatcaaattg aaccctgttt aagcagaaag tcgtcagaag gtaaaccaca
    17941 aatatttaca accttacgaa atattgctct taaccttctg actatttttg aagctgtata
    18001 tgtacataaa gggatcgtta atgcagcgaa agtgcttaat ctgcccccct cggcaatcag
    18061 tcagtctatt cagaaactgc gcgttatatt ccctgaccca ttgtttattc gcaaaggcca
    18121 aggtgtcact cctaccgcat ttgcgatgca tctacatgag tatatcagtc agggccttga
    18181 gtccattctt ggcgcgctgg atatcgaagg aagctatgat aagcaacgaa cgataactat
    18241 tgcgaccact ccctcggtcg gagccctggt ccttcctgtc atctatcggg cgattaaaac
    18301 tcactatccg cagcttttac tgcgcaaccc gcccatcagc gacgcggaaa accaactcag
    18361 tcagtttcaa accgatctca tcatcgataa catgttttgc accaatcgta cggtgcaaca
    18421 tcatgttctg ttcaccgaca atatggtgtt aatttgccgc gagggaaatc cactactctc
    18481 tttagaagat gacagagaga ctatcgacaa cgctgcgcat gtacttctgt taccggaaga
    18541 gcaaaatttc agcggtctgc ggcagagagt tcaagaaatg tttccggacc ggcaaatcaa
    18601 tttcaccagc tacaacattt tgacaatcgc tgcactggtt gccaacagtg acatgttagc
    18661 gattattccc agccgttttt ataacctgtt tagccgctgc tggccgctgg aaaaactgcc
    18721 ttttccgtcc ttaaataagg agcaaataga tttctctatc cactacaaca aattcagcct
    18781 gcgtgatccc atcctgcacg gagtaataga tgttatccgt aatgcatttt gaaaaagtat
    18841 tgttacagcc agatcacagc gcagaacgat aaaatggcac aatccaacaa caattttaca
    18901 ttttcgcgac cgctttggct gctttcaggt ccgtttcaat gatatactgc cagtcgttaa
    18961 ttcaaaaata gttgataatt acaacaatct attgaattga aacgctttcc ttcgtaattc
    19021 gcaactggaa cacgcacgct atgagtaaac ccattgtgat ggaacgcggt gttaaatacc
    19081 gcgatgccga taagatggcc cttatcccgg ttaaaaacgt ggcaatagag cgcgaagccc
    19141 tgctgcgcaa gccggaatgg atgaaaatca agcttccagc ggactctaca cgtatccagg
    19201 gcatcaaagc cgcaatgcgc aaaaatggcc tgcattctgt ctgcgaggaa gcctcctgcc
    19261 ctaacctggc ggaatgcttc aaccacggca cagcaacgtt tatgatcctc ggcgctattt
    19321 gtacccgccg ttgtccgttc tgtgatgttg cccacggtcg cccggtagct cctgatgcca
    19381 atgaaccagt gaaactggcg cagaccattg ccgatatggc gctgcgttat gtggttatca
    19441 cctccgttga ccgtgatgac ctgcgcgatg gcggtgccca gcactttgcg gattgcatta
    19501 ctgccattcg ggaaaaaagc ccgcaaatca aaattgaaac tctggtgccg gatttccgtg
    19561 gtcgtatgga tcgtgctctg gatattctga ctgcaacgcc accagatgtg ttcaaccata
    19621 acctggaaaa cgtaccgcgt atttaccgtc aggtacggcc tggggcagat tacaactggt
    19681 cgctgaagct gctggaacgc tttaaagaag cgcatccgga aatcccgacc aagtctggtc
    19741 taatggtggg actgggtgaa accaatgaag aaattattga ggtaatgcgc gacctgcgcc
    19801 gtcatggtgt gacgatgtta acgctggggc aatatttgca gccaagccgc catcacctgc
    19861 cggttcaacg ttacgttagc ccggatgagt tcgacgaaat gaaagccgaa gcgctggcga
    19921 tgggctttac ccatgctgca tgcggtccgt ttgtccgttc ttcttaccac gccgatttgc
    19981 aggcgaaagg gatggaagtt aagtaatcct gtaataatta cttacatctg tctgataaaa
    20041 aacccgcttt ttgaagcggt ttttttgtat cgaacaagat attgagggag cgtcctgctc
    20101 gccacgtcac tctttatgag agagcttttc agcctgaaga tcaacgtctg cgcctttttt
    20161 cgccgcagca tcatcatcat tcatcgcctt cttgaaccct ttaatggccg ctccaaggtc
    20221 tccgcccagc gtacgtaact tcttagtccc aaacagcaga acgaccagcg ccgcaactac
    20281 tagcagtttg gtaatactaa tctcacccat agataccttc ttgacatata accggcaaca
    20341 gaacgcgcct taaaaaccag agaatattaa cggtcattcg acgcgcgcac acaatagcaa
    20401 tctgtaacaa ggtgaatcaa gcgccgagta aaaaaacatc ataataattg cggcggcgca
    20461 aagcgacggt tgtttaagac gggcagttgc gcgcgcacct gacgcacacg ttcgggcgtc
    20521 acttccgcca taatgagtgc aggcatttct gacgctgccg caatggtgac gccaaaggga
    20581 tctataatcc ggctttgccc gatatttttg ttcccgcact cgcccgccgc caccatataa
    20641 caggtggtat ccagcgcacg agcggcaagc aacgttgacc agtgatgctc tttgagcggc
    20701 ccgcgaaccc aggcggcagg aagtaccagg atttcagctc cctgtaatgc ctgtgccagc
    20761 gccagctctg gaaagcgtaa gtcataacag gtcatcagac cgaccttcat cccttccacc
    20821 tccagtaacg gagcgatttc attaccagca tcaacacggc gtgattcctg aatggcaaat
    20881 gcatcataga gatgcagttt ggcataacgg gcgacgatgt ttcctgcctg aagtgccacc
    20941 agcatattcc atgcgcgccc cggcgttgaa ggaacatgaa tcgtcagaat tgtcgtcatc
    21001 atgttacgtt tactttctcg ccgtaaacgt ccgaggaatt cgccttccag cagctgtgct
    21061 gatttaaccg atagatctgc atcatgatca tcgcgtgcca gcaatgcttc cggcaggaca
    21121 aacagcgata cgtcgttttc cgccgcctgc gccatcaacg aggcacaaat ctcagcgttc
    21181 ttttcccaca cagatgtaac agcaaactgt cctgcagcaa ccagcattgc cacctcctgt
    21241 cagagtcgta aaattcgcca acgacgatta ttcggcgtta cacttatcac tcatacaaat
    21301 caaatagcag gattttgcag tgttacaact tcttttagca gtttttattg gcggtggtac
    21361 gggaagcgtg gcgagatggc tgttaagtat gcgatttaac ccactgcatc aggcgattcc
    21421 gttggggacg ctgacagcaa acctgattgg ggcattcatc ataggaatgg gattcgcatg
    21481 gttcagcagg atgacgaaca ttgatccagt gtggaaagta ttaatcacca ccggattttg
    21541 tggcggtcta acaaccttct caacattttc ggcagaagtg gtgtttttgt tacaagaggg
    21601 tcgctttggc tgggcattac tgaacgtttt cgtcaacctt ctggggtctt ttgccatgac
    21661 agcactggct ttctggctgt tttcggcctc aaccgcacac taaagaccca aaaaaaaccc
    21721 gctgattaag cgggttttga attcttgctg acgtatctta cagagcgatt acgtttgcag
    21781 cagaagggcc tttggcaccg ttagtgattt cgaactctac gcgctgacct tcagcaagag
    21841 ttttaaaacc attagtctgg attgcagaga agtgtacgaa cacgtctttg ctgccgtctt
    21901 ccggagtaat gaaaccgaat cctttggact cattaaacca cttaacgtta cctttaatct
    21961 tagacatcaa aattaccttt acatgaaaaa tagacacaaa tgctgcgtcg gttaccagta
    22021 caccaattgt ggtacgcttt gtccagtgca actttactaa aaagtgataa aagtcgcgtt
    22081 atttttgatg ttacttattt tagctattga ttttaaagaa gttactaaaa cttcatttgt
    22141 ctcaaaactg aaagcgcatc caggcaaagt acacattgcc attgttgtag gtacccggaa
    22201 tgtaggtcat ctgaaaagtc actgggccat aacccacgga ggccaatggc agtagaaccg
    22261 ggagagggat gtaattccag ttatcgcgtg ccgttacgcc agcggtgaat cccagaccta
    22321 aatgaaaatt ttcatccgcc agcggtcgcc aggtactttc ccatccgtat ccggcaatcg
    22381 gttcccattt gttccacgag tccttaaatg ccatggcata caggccatgc cagtttcctt
    22441 tttcatccca acgcgacagg ccaaaaccgc caccccacgg tcgctcgtta tagcgatcgg
    22501 ttttttcttt gtcgtaagcg aaacgtgcat gccaggtgat ggcaggaata tataaatcat
    22561 aatgttcagg ctgttgccag gttggtgcaa tattttctct aaacgttgtc atccactcat
    22621 ctgcgttagc aaaaacttta ccaacgctga ttaactgaat aaaaacaaag gaaaagatag
    22681 cgacatattt actcacgttc atttgtgacc ataaaacatt tatcaaaaat ctactactag
    22741 catagcaaag ctacaattaa cataacctta atagacccaa cataaagaat aatctgaata
    22801 gctgctctat ttatttccgc ttgttcaagt taaatatttc cgcgcatcga ttaaagatga
    22861 tgcgtcgttt tctgcgatgg gaatagtcaa aaaagaaaaa ccaagtcttt tttgatgaca
    22921 aaatgcaatc aaggaaaaat tattttattt tttaacgaga tacaacaatc accttaacaa
    22981 agtatataat atatatcgtc aacctatgct catattagat tattttttga gcgcacagcc
    23041 gcagctaaca ccattgcaat taacaaattt gcatcaatcc accatcaatt tgcacacatt
    23101 attatgtgat aattgccaac cgctaaatat gcgttttgtt atctatgtat aaaaacagta
    23161 acttcaatgt cttaatggca gtttttcttg attttaatca gcattcatcg ccaatttatt
    23221 gggcatattt tttccttaag ctttaggaat tttttattat ttactttggg gcctggagac
    23281 aggaaaaatt atgctgacat tcattgaact ccttattggg gttgtggtta ttgtgggtgt
    23341 agctcgctac atcattaaag ggtattccgc cactggtgtg ttatttgtcg gtggcctgtt
    23401 attgctgatt atcagtgcca ttatggggca caaagtgtta ccgtccagcc aggcttcaac
    23461 aggctacagc gccacggata tcgttgaata cgttaaaata ttactaatga gccgcggcgg
    23521 cgacctcggc atgatgatta tgatgctgtg tggatttgcc gcttacatga cccatatcgg
    23581 cgcgaatgat atggtggtca agctggcgtc aaaaccattg cagtatatta actcccctta
    23641 cctgctgatg attgccgcct attttgtcgc ctgtctgatg tctctggccg tctcttccgc
    23701 aaccggtctg ggtgttttgc tgatggcaac cctatttccg gtgatggtaa acgttggtat
    23761 cagtcgtggc gcagctgctg ccatttgtgc ctccccggcg gcgattattc tcgcaccgac
    23821 ttcaggggat gtggtgctgg cggcgcaagc ttccgaaatg tcgctgattg acttcgcctt
    23881 caaaacgacg ctgcctatct caattgctgc aattatcggc atggcgatcg cccacttctt
    23941 ctggcaacgt tatctggata aaaaagagca catctctcat gaaatgttag atgtcagtga
    24001 aatcaccacc actgctcctg cgttttatgc cattttgccg ttcacgccga tcatcggtgt
    24061 actgattttt gacggtaaat ggggtccgca attacacatc atcactattc tggtgatttg
    24121 tatgctgatt gcctccattc tggagttcct ccgcagcttt aatacccaga aagttttctc
    24181 tggtctggaa gtggcttatc gcgggatggc agatgcgttt gctaacgtgg tgatgctgct
    24241 ggttgccgct ggggtattcg ctcaggggct tagcaccatc ggctttattc aaagtctgat
    24301 ttctatcgct acctcgtttg gttcggcgag tatcatcctg atgctggtat tggtgattct
    24361 gacaatgctg gcggcagtca cgaccggttc aggcaatgcg ccgttttatg cgtttgttga
    24421 gatgatcccg aaactagcgc actcttccgg cattaacccg gcgtatttga ctatcccgat
    24481 gctgcaggcg tcaaaccttg gccgtaccct ttcgcccgtt tctggcgtag tcgttgcggt
    24541 tgccgggatg gcgaagatct cgccgtttga agtcgtaaaa cgcacctcgg taccggtgct
    24601 tgttggtttg gtgattgtta tcgttgctac agagctgatg gtgccaggaa cagcagcagc
    24661 ggtcacaggc aagtaaatag taatgccgga ggcaagtttc ctccggcttt atcatgtcac
    24721 ccactgtggt atatgcgttg tggtctgcca actttgccgt gaacaatttc agcaataatc
    24781 agatggcggc tggcgcaata ttcaagataa cgtctggcag acgtgcggct gatggtcagt
    24841 gcctgcgcca ccgtttctgc cgtatgttgc acaccaggct ctttaaacag ttttcgcacc
    24901 gcgtttagcg tcaagggatc aatgccggtc ggcagttcgt ctttaggttc accgcgagca
    24961 taggcattaa acatctcatc aatttgcttc tggctggcgc tatcaatact ttccagcata
    25021 tgtttacgct ggcggaaacg ggttagcgtt tgccccagcc gttcataggc aatgggctta
    25081 atgagataat caaatacacc acaacgtacg gcttcagaca ccgtttccat atcgctggct
    25141 gcagtggtaa acaccacgtc gccgggataa tgcgcctgca ccagttcatg caataaatta
    25201 atccctctgc cgtcaggaag atagttatcg agcaagatta gccccggctt aaaacgctcg
    25261 atcatcattc gggcctgcgc caggtttccc gccagtaata tctgactgaa tccgggaatg
    25321 tgacgaatat attccgcatg catctctgcc agcggcgttt cgtcctcaac gatcaatagg
    25381 gttaatggag ctgtcattag gtttcacttt cggaatatag attgaaaata aggtaccgca
    25441 gggatcatta tcttcgagag tgataacacc accgcagcgc gttacgtagc tggcaatcaa
    25501 gtacaaccca atgccatgtt caccgggctc gtcagcacgc gtactgaccc cctgctcaaa
    25561 tattttgtct cgtagagact ctggaacgcc gcagccctga tcggcgactt caatcaccac
    25621 atcatcgcct tcatcgctga ggaataattc aacgatcttg tttccttcat cgctacgcag
    25681 gctggcttcg aaggcgttat caagtaaatt gcccacaatg gctgcaaact cggtgctatc
    25741 cagtcctggc ggcagttgcg aaagctggct accggggaca atgatcattt ttagccccag
    25801 ttcccgggcg cgctgcactt taccaaaaag cagccccgcc acctagcgat cggcaaacgc
    25861 ctcgcgcagg ctgtcaataa gctgttgctg ggcctgagac tccccctgca ccatcgccag
    25921 cacgcgatca tactctttca tctgcaacag accattgagc gtcgacatcc aattgagatg
    25981 ctcgtgtcgc aatgtacgaa ggctctcaac gtattgtttt atttgcgtca gttgcgcatt
    26041 gagggtggaa atttcgtctt tactgcgaaa gctgataatg gcccccagca aatcatcacc
    26101 tgaacgaata gcttcccgat tggcaataac gctcagaccg ttaaagttag ccaccatatc
    26161 ctgacgtttt tcatcaatct gttcggtaaa gaaatcggcg ggcctgacca cttcagcaat
    26221 gggtttaccc aaccattgcc gtccggggga actcagcccc agcatctttc ttgcgttacg
    26281 attgatggcg gtaatgtaac cgtgcggatc caccgcaatc agcccttcat aaaccgaact
    26341 aaacagcgcc tcttgctgac ggaccacgcg tgcgatttgc tttggctcca tgcccatcat
    26401 ctgccgacgg atatgcgcgg ccaggaacca cgacagcaac atcagaatcc ctaacagcac
    26461 gacaaacaca cctgccatcg gtaataaaaa ctcagcccgc cagctatcga ttttactcac
    26521 caggtagcca atcgacacca cgccgatgac ttttccatcg tcatcaaaga ttggcgtttt
    26581 ggcgcgcatc gccatcccca ttgacccttt cccggtaatg aagtagctct cccctttctc
    26641 cagcgcgccc tgtttggtga actgcatagg ataaccaatt ttctccggat taggatggta
    26701 aaggcggatc gagtgccggt cgccatcacc acataatcaa aatcggtatc tctttgtaat
    26761 ttgttagcga tggtcgccag ccgtttgtag tcacgcgttt tcaccgcaga gatgacactg
    26821 tcattggagg caataatttt cgcctgattc attgccatgt cgcgtacatg aagcgttaaa
    26881 tagtcctcaa aactggccgt aaaatattgc gccaaggctg caatgacaaa tattgagaac
    26941 accagaatca gcaaaaagat acgcagcgga aatgccagtc tttggaaaaa tgcaaactgt
    27001 ttattctcgt taagctgcaa cattgttttc cttgcgggtt atcccgagcc tctttgacag
    27061 atgtaattaa aatgttgaat caaaatacat agatattaat tatgatcgtg gcaaatttta
    27121 ttcattaaat caattaaatc acttaaacct gcaggtcatt tcgtaattac attaattaaa
    27181 aaacttaaac cattaaataa ataaaaattt cacgccgaaa tactccttag gatgtatagc
    27241 gaaaggagaa aaagatatac ctcgatcacc cccctttctc ccaagtgaaa ataaaaggtt
    27301 atcagtttgc aacattgaac aacattcgtt gcaaatcgat aacaacatgc accttcagga
    27361 tactatttat tatgttcggc aatgatattt tcacccgcgt aaaacgttca gaaaataaaa
    27421 aaatggcgga aatcgcccaa ttcctgcatg aaaatgattt gagcgttgac accacagtcg
    27481 aagtatttat taccgtaacc cgcgatgaaa agcttatcgc gtgcggtgga attgccggaa
    27541 atattattaa atgcgttgct atcagtgaat ccgttcgcgg tgaaggactg gcgctgacat
    27601 tagccactga actgataaac ctcgcctatg agcggcacag cacgcatctg tttatttata
    27661 ccaaaaccga atacgaggcg ctgttccgcc agtgcggttt ttccacgctg accagcgtac
    27721 ccggcgtgat ggtgctgatg gaaaacagcg ccacgcgact gaaacgctat gccgaatcgc
    27781 tgaaaaaatt tcgtcatcca gggaacaaga ttggctgcat tgtgatgaac gccaatccct
    27841 ttacgaatgg tcaccgttat ctgattcaac aagctgcggc acagtgcgac tggttgcatc
    27901 tgtttttagt caaagaagat tcttcacgct tcccctatga agaccggctg gatctggtgt
    27961 taaaaggcac cgccgatatt ccacgcctga ctgtgcatcg cggctccgaa tacatcatct
    28021 cccgcgctac gttcccttgc tacttcatta aagaacagag cgtcattaac cattgttaca
    28081 ccgaaattga tctgaagatt ttccgtcagt acctcgctcc cgcactgggt gtaactcacc
    28141 gctttgtcgg tactgaaccc ttttgtcgcg ttaccgccca gtacaaccag gatatgcgct
    28201 actggctgaa aacgccgact atctccgcac cgcccatcga actggttgaa attgagcggc
    28261 tgcgttacca ggagatgccg atatccgctt cccgggtacg tcaactgctg gcgaaaaacg
    28321 atctcacggc tatcgcgccg ctggtccctg cagtcacgct gcattatttg cagaacctgc
    28381 ttgagcactc ccgccaggac gcggcagctc gtcaaaagac ccccgcatga gaaacaggtg
    28441 aaaaatgaaa ataaaccagc ccgccgttgc aggcaccctt gagtctgggg atgtgatgat
    28501 acgcatcgcc ccactcgata cgcaggatat cgacctgcaa atcaacagca gcgttgagaa
    28561 acagtttggc gatgcaattc gcaccaccat tctggacgtt ctcgcccgct acaacgtgcg
    28621 cggcgtacag ctgaatgtcg atgacaaagg cacactggac tgcattttac gtgcacgact
    28681 ggaagccctg ctggcacgcg ccagcggtat cccgactctg ccatgggagg attgccaatg
    28741 atttccgctt cgctgcaaca acgtaaaact cgcacccgcc gcagcatgtt gtttgtgcct
    28801 ggtgccaatg ccgcgatggt cagcaactcc ttcatctacc cggctgatgc cctgatgttt
    28861 gacctcgaag actccgtggc attacgtgaa aaagacaccg cccgccgcat ggtttatcac
    28921 gcgctgcaac atccgctgta tcgcgatatt gaaaccattg tgcgtgtcaa cgcgctggat
    28981 tccgaatggg gtgttaacga cctggaagcc gtcgttcgcg gtggtgcgga cgttgtgcgt
    29041 ctgccgaaaa ccgataccgc tcaggatgtt ctggatattg aaaaagagat cctgcgtatc
    29101 gaaaaagcct gtggtcgtga acccggcagc accggcctgc tggcggcgat tgaatctccg
    29161 ctgggcatta cccgcgcagt ggaaatcgct cacgcttccg agcgtttgat cggtatcgcc
    29221 ctcggtgcag aagactatgt gcgcaacctg cgtacagaac gctccccgga aggaactgaa
    29281 ctgctgttcg cacgctgttc cattttgcag gccgcgcgct ctgcgggtat tcaggcgttc
    29341 gataccgtct attccgacgc taacaacgaa gccggattcc tgcaagaagc cgcccacatc
    29401 aaacagctgg gctttgacgg caaatcgctg atcaacccgc gtcagattga tctgctgcac
    29461 aacctctacg caccgaccca gaaagaagtg gatcacgccc gccgcgtcgt agaagccgct
    29521 gaagccgccg ctcgcgaagg cctcggcgtg gtttccctga acggcaagat ggtggacggt
    29581 ccggttatcg atcgcgcccg tctggtgctc tcccgtgcag aactttccgg catccgcgaa
    29641 gaataaggca atcaaaatga cgcagaaaat tgaacaatct caacgacaag aacgggtagc
    29701 ggcctggaat cgtcgcgctg aatgcgatct tgccgctttc cagaactcac caaagcaaac
    29761 ctaccaggct gaaaaagcgc gcgatcgcaa actgtgtgcc aacctggaag aagcgattca
    29821 tcgctctggt ttacaggacg gcatgacggt ttccttccat cacgctttcc gtggcggtga
    29881 cctgaccgtc aatatggtga tggacgtcat cgcgaagatg ggctttaaaa acctgactct
    29941 ggcctccagc tccctgagtg attgccatgc gccgctggta gaacacattc gccagggcgt
    30001 ggttacccgc atttatacct ctggcctgcg cggtccactg gcggaagaaa tctcccgtgg
    30061 tctgctggcg gaaccggtgc aaatccactc tcacggcgga cgtgtgcatc tggtacagag
    30121 cggcgaactg aatatcgacg tggctttcct cggcgtccca tcctgtgatg aattcggtaa
    30181 tgccaacggt tacaccggta aagcctgctg tggctccctc ggctatgcaa tggttgatgc
    30241 cgacaacgca aaacaggtcg tgatgcttac cgaagaactg ctgccttatc cgcataatcc
    30301 ggcaagcatt gagcaagagc aggttgattt gatcgtcaaa gttgatcgcg ttggcgatgc
    30361 tgcaaaaatc ggcgctggtg cgacccgtat gaccactaac ccgcgcgaac tgcttattgc
    30421 ccgtagcgct gcggatgtga ttgtcaactc tggctacttc aaagaaggtt tctccatgca
    30481 aaccggcacc ggcggcgctt cgctggcggt aacccgtttc ctggaagaca aaatgcgtag
    30541 ccgcgatatt cgcgccgact tcgccctcgg cggtattact gcaacgatgg ttgatctgca
    30601 cgaaaaaggt ctgatccgca aactgctgga tgtgcagagc tttgacagcc atgctgcgca
    30661 atcgctggcc cgtaacccca atcacatcga aatcagcgcc aaccagtacg ctaactgggg
    30721 ttcgaaaggc gcatcggttg atcgtctcga cgtggtggta ctgagcgcgc tggaaattga
    30781 cacccagttc aacgttaacg tgctgaccgg ctctgacggc gtactgcgtg gtgcttccgg
    30841 tggtcactgc gataccgcga ttgcctctgc gctttccatc atcgtcgcgc cgctggtacg
    30901 cggtcgtatt ccgactctgg tggataacgt gctgacctgc atcaccccgg gctccagtgt
    30961 cgatattctg gtcacagacc acggtatcgc agttaacccg gcacgtccgg agctggcaga
    31021 acgtctgcag gaagcgggca ttaaagtggt ttccattgag tggctgcgtg aacgtgcgcg
    31081 tctgctgacc ggtgaaccac agccgattga attcaccgac cgcgtcgttg ccgttgtgcg
    31141 ttaccgcgat ggctcggtga tcgatgttgt acatcaggtg aaggaataag ccatgcacct
    31201 gcttcctgaa ctcgccagcc accatgcggt gtcaattccc gagctgctcg tcagccggga
    31261 tgaaaggcaa gcacggcaac acgtctggct caagcgccat cctgttccac tggtctcctt
    31321 taccgtggtt gcgcctaggc cgattaaaga cagtgaggtc acacgccgaa tttttaatca
    31381 tggcgtgaca gccttgcgtg ccttagccgc aaaacagggc tggcaaattc aggagcaggc
    31441 tgcactggtt tccgccagcg ggccggaggg tatgttgagc attgccgccc ctgctcgcga
    31501 cctcaagctc gccaccattg agcttgaaca tagtcatcct ctcgggcggt tatgggatat
    31561 cgatgtcctg acgcccgaag gcgaaattct ctcccgccgc gactattcac tgccgcctcg
    31621 ccgctgcctg ttgtgcgagc aaagcgcagc cgtctgcgcg cgtggaaaac ccatcaactg
    31681 accgatttac tcaaccgcat ggaggcactg ctgaacgatg tcgatgcctg caacgtcaac
    31741 taaaaccaca aagcttgcga cgtcattaat cgatgagtac gccctgctgg gctggcgcgc
    31801 catgctgact gaagtcaatc tgtcaccgaa accaggtctc gtggatcgca ttaactgcgg
    31861 tgcgcataaa gatatggcgc tggaagattt ccaccgcagc gcgctggcga ttcagggctg
    31921 gctaccccgt ttcattgaat ttggtgcctg tagtgcggaa atggcaccag aagcggtact
    31981 ccacggatta cgcccaattg gtatggcttg caaaggtgat atgttccgcg ccaccgcggg
    32041 cgtaaacacg cataagggca gcattttttc tttagggcta ctgtgtgcgg caattggccg
    32101 tttgcttcag ctcaaccagt cgctaacgcc aacaaccgtt tgttctacgg cggcaagttt
    32161 ctgccgtggc ctgaccgatc gcgaactgcg taccaataat tcacaactga cggcaggtca
    32221 acggttgtac cagcagcttg cccttaccgg cgcacgcggt gaagccgaag cgggttatcc
    32281 actggtgatc aaccacgcct tgccgcatta cctcactctg ctggatcagg ggttagatcc
    32341 tgaactggca ttgctcgata ccttgctcct actgatggcg atcaacggcg ataccaacgt
    32401 tgcttcgcgc ggtggcgagg gggcctgcgc tggctacagc gcgaggcgca aacattattg
    32461 caaaaagggg gcattcgaac ccccgccgat ctcgattatc tccggcagtt cgacagggag
    32521 tgtatcgaac gaaatctcag tccaggcggc agtgccgacc agctgatcct tacctggttt
    32581 ttagcacaga tttaattatt taagcacttg ataaatttgg aaatattaat tttcggagaa
    32641 cccgtatgtc tttagcaaaa gataatatat ggaaactatt ggccccactg gtggtgatgg
    32701 gtgtcatgtt tcttatccct gtccccaacg gtatgccacc acaggcatgg cattacttcg
    32761 ctgtgtttgt ggcaatgatt gtcggcatga tcctcgagcc aattccggca acagcgatca
    32821 gttttattgc ggttactatt tgcgttattg gcagtaatta cctgctcttt gatgccaaag
    32881 aattagctga cccagcgttt aatgcgcaaa aacaggcgct gaaatggggt ctggctggtt
    32941 tttccagcac cacggtatgg ctggtatttg gcgcatttat ttttgcatta gggtatgaag
    33001 tttccgggtt aggtcgtcgc attgcccttt tcctggtgaa attcatgggc aaacgcacgc
    33061 tgacgttggg ttatgcgatt gtcattatcg acattctgct ggcgccgttt acaccgtcca
    33121 acaccgcgcg taccgggggt acggtttttc cggtcattaa aaacctgccg ccgttgttta
    33181 aatcattccc caacgatccg tccgcgcgtc gtattggcgg ctatttgatg tggatgatgg
    33241 tcattagtac cagtctgagt tcgtccatgt ttgtcaccgg tgcggcacca aacgtgctgg
    33301 gtctggagtt cgtcagcaaa attgccggta tccagattag ctggttgcag tggttcctct
    33361 gcttcctgcc ggttggggtt atcttgctta tcattgcgcc gtggctttcc tacgtgctgt
    33421 acaaaccgga aatcacacac agtgaagaag tggcaacctg ggcgggtgat gaactgaaaa
    33481 ccatgggtgc gctgacacgc agagagtgga cactgattgg ccttgtattg ctcagcttag
    33541 gtttgtgggt ttttggcagt gaagtcatta atgctactgc agttggtctg ctggcagttt
    33601 cgctaatgct ggccctgcac gttgtgcctt ggaaagatat tacccgctat aacagcgcat
    33661 ggaacacgct ggtcaacctg gcaactctgg ttgtgatggc taacggcctg actcgttctg
    33721 gctttattga ctggttcgcc ggtaccatga gtacgcacct ggaaggattc tcaccaaacg
    33781 caacggtgat tgtactggtt ctggtgttct actttgcaca ctacctgttt gccagcctgt
    33841 ctgcgcacac cgcaaccatg ctgccggtta ttctggccgt cggtaaaggt attccgggcg
    33901 taccaatgga acaactgtgt atcctgctgg tgctgtctat cggtatcatg ggctgtctga
    33961 cgccctatgc aaccggtcct ggggtgatta tttacggctg tggctatgtg aaatcaaaag
    34021 attactggcg tcttggcgca atcttcgggg tgatttatat ctctatgttg ctgttggttg
    34081 gctggccgat tctcgccatg tggaactaat acgttcgcca aacgctgaat aaatcatcac
    34141 gcccgccagg taagcccacc tggcgggcgt gatgatttaa tagatagtat tcagtgtatg
    34201 tatgagttcc acacccatta tgaaagaatt ctggcgtaac gccgcgttgc tcgcggtttc
    34261 tctgcttccc ttctcttctg ccaacgccgt agcgttgcag gcaaaacagt atggcgattt
    34321 tgatcgctat gtcctggccc tctcctggca aaccggattt tgccagagtc aacacgatcg
    34381 aaatcgtaac gaacgagatg aatgtcgcct gcaaaccgaa acgaccaaca aagctgattt
    34441 tctgaccgta catggtctgt ggccaggatt gcctaaatcg gttgctgccc gtggtgttga
    34501 tgaacgccgc tggatgcgct tcggttgcgc tactcgccca atcccgaatc taccagaagc
    34561 gcacgccagc cggatgtgtt catcgccgga aaccgggtta tcactggaaa cggccgctaa
    34621 actaagtgaa gtcatgccag gagctggcgg acgttcctgc ctggaacgct acgaatatgc
    34681 caaacacggt gcctgctttg gttttgatcc ggacgcatac ttcggtacga tggtacgcct
    34741 gaatcaagaa attaaagaga gcgaagccgg aaaattcctt gcggataatt acggtaaaac
    34801 agtgagccgc cgtgactttg acgccgcctt tgccaaaagc aggggaaaag agaacgtgaa
    34861 agcagttaag ctaacgtgcc agggtaaccc tgcgtatttg actgaaattc agatctcgat
    34921 caaagctgac gccatcaacg ctccgctttc tgcaaactca ttcttgccac aaccacaccc
    34981 aagcaactgt ggcaaaacct ttgtgattga taaagtgggt tattaatcat ctgatttaca
    35041 aaacacgcta attcgtcttc cataaaccgt gacgattaag aattatacat aatgcgctgc
    35101 attgaggaat tccctgaatg tgacgcaaat cacttcaaag agtgagcaac agtcagtatc
    35161 atcatgtgag ttaaaccctc gccgcctgac ggtgagggtt ttcttttggg tatgtttatc
    35221 tgcgacactc gcagtaccga cgacatggag taaaaatgtc cagaccaact atcatcatta
    35281 acgacctgga tgccgaacgc atcgatattc tgctggagca acccgcctat gctggtttgc
    35341 caatcgccga cgcgttaaac gcagagttgg atcgcgccca aatgtgttcg ccagaagaga
    35401 tgccacacga cgtggtgaca atgaacagcc gggttaaatt ccgcaatctt agcgatggcg
    35461 aagtgcgtgt gcgcacgctg gtgtatccgg caaaaatgac cgatagcaat actcagcttt
    35521 ccgttatggc tccggtaggt gccgcactgc tggggctgcg cgttggcgat tccattcact
    35581 gggaacttcc gggcggcgtt gcaacccacc ttgaagtgct ggaactcgaa taccagccag
    35641 aagctgctgg cgactacctg ctttaatccc atctgcacaa gcgataactc gctttgccca
    35701 gaggatgcac tcgcatcctc tttacgcaaa atcagcaatt tttcctggtt ctcactgttc
    35761 acttttgctg caaaattatt ccgtttcgtt tgtgggaata accatggcag aagcatttta
    35821 catcctgata ggatttctga ttatggcggc gattatcgtc atggctgtcc tttacctcga
    35881 aaaccactcc tgacgatcat attgttcccc ccggcatcgc attcaccaga cctgaaactg
    35941 ccttctgcgc ctcctctgcg ctttgtgcac cgggtaccag aatcacctta cggcactcct
    36001 cttcacgttt ttcgaaaatc tcatatcccc gggcggcctc ttcaaacggc atatagtggg
    36061 taacaatttc ttctggtttc agtaatcctt tctcaattaa cggtaataat tctcccagcc
    36121 atgcgtgaac gtgggtctgt cccattttaa acgtcaaccc tttatcaaag gcgtcaccaa
    36181 acaggaaacc gtgaataaat ccagcgtaga cgcccggtac gctaacaatg ccgccacgcc
    36241 tgaccgccgc aatacactgg cgcaacgctt taccgctgct gccctccagt ttcaggttag
    36301 tcagcaccgt ttccgtggtg ctgcctttcg cttcaaaacc gacggcgtct attactgcat
    36361 ccacgccccg gtgacctgcc gtttgttcaa taattgactg tgccggatcg ctatcttcat
    36421 cgaaattaat cgggatcgcg ccgtagcggt cagcggcgaa actcaagcgg tagggatgat
    36481 gatcaacaac aaaaatctgt tccgcaccga gcaaccgtgc acaggcgatt gtcaacaatc
    36541 ccactggacc ggcaccatag actgcaacgc ttgaaccttg ttggatctgc gcattttttg
    36601 ctgcctgcca tgccgttggc agaatatcag aaaggaaaag ggctttatca tctgaaagca
    36661 aaggcggtac tttaaacggc cccacattcc ctttagggac gcggacatat tccgcctgtc
    36721 caccaggaac gccaccatac aggtgactat aaccaaacaa tgccgcggga gctggtatct
    36781 gttttttatt gagcgcagcg cctttacccg cattggtatt ttcgcaggcg gcatattgct
    36841 gcattcgaca gaaaaaacag tcgccacaag caatgacaaa cggaattacc acccggtcgc
    36901 ctttttgcaa attttttacg tcctttccgg tttcaacgac ttcccccata aattcatgac
    36961 caaaaatatc gccatgttta acctggggta ttttgcctcg ataaagatgg agatcagagc
    37021 cacagatcgc cgttgccgta atacgcagaa taatatcatc tgcctgttca atgcccggat
    37081 cgggaacatt ttctacctga acgtgatgtg ggccgtgata agtcaatgct ttcatgcaac
    37141 ctccagagac agttcaaaaa agagtcagtc tttaagggta gctatcacag cgggaaaacg
    37201 ggcggtaccg caggttttgg gagaattcct ggtgttcagt gagaatatat taatcacaga
    37261 aaccgttcgt aaggaaaaag aaccagacaa atatcaggga taaatattat aatcatggcg
    37321 aatgatttgt tcatgattaa cagggagaaa gggttatgta taagacaatc attatgccag
    37381 ttgatgtatt tgaaatggaa ttgagcgaca aagctgttcg ccacgctgaa ttcctcaccc
    37441 aggatgacgg agttattcat ctacttcacg tactacccgg gtcagccagc ctgagcctgg
    37501 accgttttgc cgctgatgtg cgtcgttttg aagagcatct gcaacatgaa gcagaagaac
    37561 gtctgcaaac gatggtcagc cacttcacca tcgatccttc ccgcattaaa caacatgtcc
    37621 gttttggtag cgtgcgggat gaagtcaatg agttggcaga agaactgggg gctgatgttg
    37681 tagttatcgg ttctcgcaac ccatcgattt cgacccatct gttaggttct aacgcctcga
    37741 gcgtgatccg ccacgccaat ctgcctgtac tggtcgttcg ctaacagata aaagtattta
    37801 tgccgccctg cctggaacat cccggcaggg ctttttaatg ccataaaaaa gccgctaggt
    37861 ttgaccccgg cggctaagca attgcaggtg aatcttactt cttcttatgc agttttggtg
    37921 cgaatcaggt agtcaaaagc actcagagag gctttggcac cttcgccagt ggcgatgatg
    37981 atctgcttgt acggaaccgt cgtacagtca cccgctgcga atacgccttt gacgttggtt
    38041 tcgcatttcg catcaatgat aatctcaccc atgcggttac gttcgactgc gccttcgagc
    38101 cagttggtgt tcggcagcag accaatctgc acgaaaatac cggccagttc gatgttgtga
    38161 atatcgccgc tgacacgatc tcgatattcc agaccaacga ctttgctgcc gtcgcctttc
    38221 acttccgtgg tttgcgcatt cagaataatg tcgacgtttt tcaggctgcg cagtttgtcc
    38281 tgcagaacct ggtcggcttt catttctggc gcaaattcca gcagcgttac gtgctcaacg
    38341 atacccgcca ggtcaattgc cgcttccacg ccggagttac cgccgccgat aaccgctacg
    38401 cgtttacctt taaacagcgg gccgtcgcag tgcgggcagt aggtcacgcc tttggtgcga
    38461 tactgatctt cgcccggaac gttcatgttg cgccattttg caccggtcgc cacgataatg
    38521 ctgcgtgctt tcagtaccgc gccagaagct gtttcaatct gatgcagacc accttcaact
    38581 gctgctggga tcagtttgct ggcgctctgg ctgtcgatca catcaacgtc gtattcatca
    38641 acgtgaactt tcagtgcgcc tgccagcttc tgcccttcag tcttcggtac agaaatgtag
    38701 ttttcgatat caacggtatc gaggatctga ccaccaaaac gttcgcccat cagaccggta
    38761 cggatgcctt tacgtgcgga gtaaattgct gccgctgcac ccgccgggcc ggaaccgacg
    38821 attaatacgt cataagcatc acgcttgttc agctcttctg ccgcacgttt ttccgcgccc
    38881 gtatcaattt tggcaacgat ttcagtcaac gtcatgcggc cctgaccaaa ctctttcccg
    38941 tttacgaaca ctgccggaac gcccatcacg ttgcgatcgg tgatttcgtt ctggaaggtg
    39001 ccgccgtcaa ttgcagtgtg cttgatgcgc gggttcagta cgctcatcag gttcagcgcc
    39061 tgcaccacgt ccgggcagtt atggcaagag agcgagtaat aggtttcgaa ttcaaaatca
    39121 ccgtcaatat ggcgaatctg ctccagcaga gactgcgctt ctttcgacgg atgaccaccg
    39181 gtccacagca acgccagtac cagcgaggtg aactcgtggc ccagcgggga gcctgcaaaa
    39241 cgtggcccct ggttggaacc taggttggtg atcaggaaag acggcttacg caccggcaag
    39301 ctgttatctt ctttaaaggt gactttgtct gacagttctg cgatttcagc caacagttcc
    39361 ttgatttctg ccgatttagc gctgtcatcc agcgtggcaa ttaactcaac aggcttggtc
    39421 aatttctcaa ggtaagcctt gagttgagtt ttcatatttg tgtcgagcat gtttatctcc
    39481 tgggctttaa acatcatcat gcaagcggcc tctacggcta cctggatgca gcttgcatca
    39541 tagtgcgggg aagaaaatcg ggtgccgcag cacccgaaga attaggtgaa tttccgaagt
    39601 atttcgcgcc ggagttggta gcgcgaaaga cgaaggaaat ttagatttta ccaaccaggt
    39661 ccagagacgg agccagagtt gcttcacctt ctttccattt agccgggcaa acttcacctg
    39721 ggtgagaagc tacgtactgt gctgctttga ttttacgcag caggtcagac gcgtcacggc
    39781 caatgccttc agcggtaact tcgattgcct ggatgatacc ctgcgggtca acaacgaagg
    39841 tcgcacggtc agccagacct tcatcttcac gcatgttgtc gaagttacgg gtcagggcgc
    39901 cagtcgggtc gccgatcatc gcatatttga ttttagcgat ggtttcagag ctgctgtgcc
    39961 atgctttgtg ggtgaagtga gtatcggtag atactgcgta tacgtctacg cccagtttct
    40021 gcagttcttc gtagtggtca gcaacgtcac ccagttcggt cgggcatacg aaagtaaagt
    40081 cagccgggta gaagaagaag acgctccagc ggccttcggt atctttttcg gtgatttcga
    40141 tgaattcgcc gtttttgaat gcctggtttt taaaaggttt aattttggtg ttaatcaagg
    40201 acatctatac ttcctccgtg ttttcgatga gatgtaaggt aaccaatttt tgccgattcg
    40261 gctaatgcgt ttccattatc aaatcgataa gttttacctt acaaccttcg taagacaact
    40321 ttgtgaactt tgcaccgcca gcggcgataa aaagtaaaat ggcccccttt ccaggtgacc
    40381 gtgtaatctg aactaccctt tggtatcttc agcgcctgcc tgcaggctga ggcgttgccc
    40441 ttacaaatgc aacaacgaca tggattacaa caccctcata aacaaagggc aatcacctga
    40501 tctaagctct tacctatgac agtgataggt tatgcctttt actcgacttt tgcactgact
    40561 gaaaaggaca aattaatgtt aaaaaagata cttttactgg ctctgcttcc tgcaatcgcc
    40621 ttcgcagagg aacttcctgc tccagtaaaa gcgattgaaa aacagggcat tacaatcatc
    40681 aaaacgttcg atgcccccgg aggaatgaaa ggttatctcg gaaagtatca ggatatgggc
    40741 gtcaccatct acctgactcc agatggtaag cacgctatct ctggttacat gtacaacgag
    40801 aaaggtgaaa acctgagtaa cacacttatc gaaaaagaaa tttacgcacc agccggacgc
    40861 gaaatgtggc aacggatgga acaatcccac tggctcctcg acggtaaaaa agatgcgccg
    40921 gtcattgtct acgtcttcgc cgatccgttc tgcccatatt gtaaacagtt ctggcagcag
    40981 gc
//
LOCUS       DADMJB010000012        40425 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.012, whole genome shotgun sequence.
ACCESSION   DADMJB010000012 DADMJB010000000
VERSION     DADMJB010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 40425)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40425)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40425
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.012"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(115..2436)
                     /locus_tag="JN078_000621"
     CDS             complement(115..2436)
                     /locus_tag="JN078_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HAY9039927.1"
                     /translation="MMNDSFCRIIAGEIQARPEQVDAAVRLLDEGNTVPFITRYRKEI
                     TGGLDDTQLRNLETRLSYLRELEERRQAILKSISEQGKLTDDLAKAINATLSKTELED
                     LYLPYKPKRRTRGQIAIEAGLEPLADLLWSDPSHTPEVAAAQYVDADKGVADTKAALD
                     GARYILMERFAEDAALLAKVRDYLWKNAHLVSTVVSGKEEEGAKFRDYFDHHEPLSTV
                     PSHRALAMFRGRNEGVLQLSLNADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRK
                     GVVSWTWRIKVLMHLETELMGTVRERAEDEAINVFARNLHDLLMAAPAGLRATMGLDP
                     GLRTGVKVAVVDATGKLVATDTIYPHTGQAAKAAMTVAALCEKHNVELVAIGNGTASR
                     ETERFYLDVQKQFPKVTAQKVIVSEAGASVYSASELAAQEFPDLDVSLRGAVSIARRL
                     QDPLAELVKIDPKSIGVGQYQHDVSQTQLARKLDAVVEDCVNAVGVDLNTASVPLLTR
                     VAGLTRMMAQNIVAWRDENGQFQNRQQLLKVSRLGPKAFEQCAGFLRINHGDNPLDAS
                     TVHPEAYPVVERILAATQQALKDLMGNSSELRNLKASDFTDEKFGVPTVTDIIKELEK
                     PGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISS
                     LSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPGETNARRGGGNERPQ
                     NNRPAAKPRGREAQPAGNSAMMDALAAAMGKKR"
     gene            complement(2533..3045)
                     /gene="greB"
                     /locus_tag="JN078_000622"
     CDS             complement(2533..3045)
                     /gene="greB"
                     /locus_tag="JN078_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709179.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HAY9039928.1"
                     /translation="MRIIKQTKGINEMKTPLVTREGYEKLKQELNYLWREERPEVTKK
                     VTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAW
                     VEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASW
                     YVNAIEYVKP"
     gene            3237..3956
                     /gene="ompR"
                     /locus_tag="JN078_000623"
     CDS             3237..3956
                     /gene="ompR"
                     /locus_tag="JN078_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018150685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator OmpR"
                     /protein_id="HAY9039929.1"
                     /translation="MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL
                     TRESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDY
                     IPKPFNPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMP
                     LTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAH
                     PRYIQTVWGLGYVFVPDGSKA"
     gene            3953..5305
                     /gene="envZ"
                     /locus_tag="JN078_000624"
     CDS             3953..5305
                     /gene="envZ"
                     /locus_tag="JN078_000624"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     EnvZ"
                     /protein_id="HAY9039930.1"
                     /translation="MRRLRFSPRSSFARTLLLIVTLLFASLVTTYLVVLNFAILPSLQ
                     QFNKVLAYEVRMLMTDKLQLEDGTQLVVPPAFRREIYRELGISLYSNEAAEEAGLRWA
                     QHYEFLSHQMAQQLGGPTEVRVEVNKSSPVVWLKTWLSPNIWVRVPLTEIHQGDFSPL
                     FRYTLAIMLLAIGGAWLFIRIQNRPLVDLEHAALQVGKGIIPPPLREYGASEVRSVTR
                     AFNHMAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEE
                     CNAIIEQFIDYLRTGQEMPMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHP
                     LSIKRAVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVR
                     GDSARTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVTRAQGTTKEG
                     "
     gene            complement(5381..7003)
                     /gene="pckA"
                     /locus_tag="JN078_000625"
     CDS             complement(5381..7003)
                     /gene="pckA"
                     /locus_tag="JN078_000625"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HAY9039931.1"
                     /translation="MRVNNGLTPQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGY
                     ERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETW
                     QHLKGLVTRQLSGKRLFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEEL
                     AGFKPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSM
                     MNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDD
                     GVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVREDGTIDFDDGSKTENTRV
                     SYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHFLSGFTAKLA
                     GTERGITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRI
                     SIKDTRAIIDAILNGSLDNAETFTLPMFNLAIPTELPGVDTKILDPRNTYASPEQWQE
                     KAETLAKLFIDNFDKYTDTPAGAALVAAGPKL"
     gene            7382..9106
                     /locus_tag="JN078_000626"
     CDS             7382..9106
                     /locus_tag="JN078_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4153 domain-containing protein"
                     /protein_id="HAY9039932.1"
                     /translation="MDNVELSPATRWGMIATGLLQGLVCYLLIAWLAGKNHSWIVYGV
                     PATVAFSSVLLFSVISFKQKRLWGWLALVFIATTGMSGWLKWQTDGMNPWRAEKAIWD
                     FGCYLLLMAMLLLPWIQQSLRIRNCSSRYSYFYQSVWHNVLILLVIFLANGLTWLVLL
                     LWGELFKLVGIKFFNTLFFATDWFMYLTLGLVTALAVILARTQSRLIDSIQKLFTLIA
                     TGLLPLVSLLTLMFIITLPFTGLSAISRHISAAGLLLTLAFLQLILMAIVRDPQKASL
                     PWTGPLRCLIKIALLVAPLYVFVAAWALWLRVAQYGWTVDRLQGALAVLVLLVWSLGY
                     FVSIVWRNGQNPLVLQGKVNLAVSLLVLVILVLLNSPVLDSMRISVNSHMARYQSGKN
                     TPDQVTIYMLEQSGRYGRAALESLKSDAGFMKDPKRARDLLMALDGEQHLQEQVSEKV
                     LAENVLIAPGSVKPDVTFWSALIQDRYNVMTCIEKDACVLVEQDLNSDGQAERILFAF
                     NDDRVIVYGFDSDRKEWDALDMSLLPNEITKEKLLTAAKDGKLGTRPKAWRDLTVDGE
                     TLEINLSK"
     gene            complement(9241..10119)
                     /gene="hslO"
                     /locus_tag="JN078_000627"
     CDS             complement(9241..10119)
                     /gene="hslO"
                     /locus_tag="JN078_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417860.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HAY9039933.1"
                     /translation="MPQHDQLHRYLFENFAVRGELVTVSETLQQILENHDYPQPVKNV
                     LAELLVATSLLTATLKFDGDITVQLQGDGPMNLAVINGNNNQQMRGVARVQGEIPENA
                     DLKTLVGNGYVVITITPSEGERYQGVVGLEGDTLAACLEDYFMRSEQLPTRLFIRTGD
                     VDGKPAAGGMLLQVMPAQNAQQDDFDHLATLTETIKTEELLTLPANEVLWRLYHEEEV
                     TVYDPQDVEFKCTCSREHCADALKTLPDEEVDSILAEDGEIDMHCDYCGNHYLFNAMD
                     IAEIRNNASPADPQVH"
     gene            complement(10144..10545)
                     /gene="hslR"
                     /locus_tag="JN078_000628"
     CDS             complement(10144..10545)
                     /gene="hslR"
                     /locus_tag="JN078_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated heat shock protein Hsp15"
                     /protein_id="HAY9039934.1"
                     /translation="MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK
                     PSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMAMAR
                     KLNALTMPHPDRRPDKKERRDLLRFKHGDSE"
     gene            complement(10556..11224)
                     /gene="yrfG"
                     /locus_tag="JN078_000629"
     CDS             complement(10556..11224)
                     /gene="yrfG"
                     /locus_tag="JN078_000629"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP/IMP nucleotidase"
                     /protein_id="HAY9039935.1"
                     /translation="MHINIAWQDVDTVLLDMDGTLLDLAFDNYFWQKLVPETWGAKNG
                     VTPQEAMEYMRQQYHDVQHTLNWYCLDYWSEQLGLDICAMTTEMGPRAVLREDTIPFL
                     EALKASGKQRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWHAVAE
                     ATGLKAERTLFIDDSEAILDAAAQFGIRYCLGVTNPDSGIAEKQYQRHPSLNDYRRLI
                     PSLM"
     gene            complement(11289..13424)
                     /gene="igaA"
                     /locus_tag="JN078_000630"
     CDS             complement(11289..13424)
                     /gene="igaA"
                     /locus_tag="JN078_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular growth attenuator protein IgaA"
                     /protein_id="HAY9039936.1"
                     /translation="MSTIVIFLAALLACSLLAGWLIKVRSRRSQLPWTNAFADAQTRK
                     LTPEERSAVENYLESLTQVLQVPGPTGASAAPISLALNAESNNVMMLTHAITRYGIST
                     DDPNKWRYYLDSVEVHLPPFWEQYINDENTVELIHTDSLPLVISLNGHTLQEYMQETR
                     GYALQPVPSTQASIRGEESEQIELLNIRKETHEEYALSRPRGLREALLIVASFLMFFF
                     CLITPDVFVPWLAGGALLLLGAGLWGLFAPPAKSSLREIHCLRGTPRRWGLFGENDQE
                     QINNISLGIIDLVYPAHWQPYIAQDLDQQTDIDIYLDCHVVRQGRYLSLHDEVKNFPL
                     QHWLRSTIIAAGSLLVLFMLLFWIPLDMPLKFTLSWMKGAQTIEATSVKQLADAGVRV
                     GDTLRISGTGMCNIRTSGTWSAKTNSPFLPFDCSQIIWNDARSLPLPESELVNKATAL
                     TEAVNRQLHPKPEDESRVSASLRSAIQKSGMVLLDDFGDIVLKTADLCSAKDDCVRLK
                     NALVNLGNSKDWDALVKRANAGKLDGVNVLLRPVSAESLDNLVATSTAPFITHETARA
                     AQSLNSPAPGGFLIVSDEGSDFVDQPWPSASLYDYPPQEQWNAFQKLAQMLMHTPFNA
                     EGIVTKIFTDANGTQHIGLHPIPDRSGLWRYLSTTLLLLTMLGSAIYNGVQAWRRYQR
                     HRTRMMEIQAYYESCLNPQLITPSESLIE"
     gene            13744..14304
                     /gene="nudE"
                     /locus_tag="JN078_000631"
     CDS             13744..14304
                     /gene="nudE"
                     /locus_tag="JN078_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP compounds hydrolase NudE"
                     /protein_id="HAY9039937.1"
                     /translation="MSKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERMRP
                     TNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGF
                     GANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLE
                     DPDFNEARNVSALFLVREWLKGQGRV"
     gene            complement(14469..17021)
                     /gene="mrcA"
                     /locus_tag="JN078_000632"
     CDS             complement(14469..17021)
                     /gene="mrcA"
                     /locus_tag="JN078_000632"
                     /EC_number="2.4.1.129"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312265.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase/peptidoglycan
                     DD-transpeptidase MrcA"
                     /protein_id="HAY9039938.1"
                     /translation="MKFVKYFLILAVCCILLGAGSIYGLYRYIEPQLPDVATLKDVRL
                     QIPMQIYSADGELIAQYGEKRRIPVTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIF
                     RAASVALFSGHASQGASTITQQLARNFFLSPERTLMRKIKEVFLAIRIEQLLTKDEIL
                     ELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLNEMAVIAGLPKAPSTFNPLYSMDRA
                     VARRNVVLSRMLDEGYITQQQFDQTRTEAINANYHAPEIAFSAPYLSEMVRQEMYNRY
                     GESAYEDGYRIYTTITRKVQQAAQQAVRNNVLDYDMRHGYRGPANVLWKVGESAWDNN
                     KITDTLKALPTYGPLLPAAVTSANPQGATAMLADGSTVALSMEGVRWARPYRSDTQQG
                     PTPRKVTDVLQTGQQIWVRQVGDAWWLAQVPEVNSALVSINPQNGAVMALVGGFDFNQ
                     SKFNRATQALRQVGSNIKPFLYTAAMDKGLTLASMLNDVPISRWDAGAGSDWQPKNSP
                     PQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHTESLALGSA
                     SFTPMQVARGYAVMANGGFLVDPWFISKIENDQGGVIFEAKPKVACPECDIPVIYGDT
                     QKSNVLENNDVEDVAISREQQNVSVPMPQLEQANQALVAKTGAQEYAPHVINTPLAFL
                     IKSALNTNIFGEPGWQGTGWRAGRDLQRRDIGGKTGTTNSSKDAWFSGYGPGVVTSVW
                     IGFDDHRRNLGHTTASGAIKDQISGYEGGAKSAQPAWDAYMKAVLEGVPEQPLTPPPG
                     IVTVNIDRSTGQLANGGNSREEYFIEGTQPTQQAVHEVGTTIIDNGEAQELF"
     gene            17141..17920
                     /gene="hofM"
                     /locus_tag="JN078_000633"
     CDS             17141..17920
                     /gene="hofM"
                     /locus_tag="JN078_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofM"
                     /protein_id="HAY9039939.1"
                     /translation="MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDII
                     KDGRIVDAQQLAKTLLPWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWL
                     SGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPD
                     ASALQRFLPFLPSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALFVDPDS
                     VAICGEGGFDPWEAVSVRQPLLPPPGGDFAIALGLALGKAY"
     gene            17920..18459
                     /locus_tag="JN078_000634"
     CDS             17920..18459
                     /locus_tag="JN078_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilN domain-containing protein"
                     /protein_id="HAY9039940.1"
                     /translation="MNPPINFLPWRQQRRTAFLRFWLLMFVAPLLLAVGITLILRLTG
                     SAEARIDAVLLQAEQQLARSLQITKPRLLEQQQLRKQRSQRQRQRQFTRDWQSALEAL
                     AALLPEHAWLTTISWQQGTLEIKGLTTSITALNALETSLRQDASFHLNQRGATQQDAQ
                     GRWQFEYQLTRKVSDEHVL"
     gene            18443..18883
                     /gene="hofO"
                     /locus_tag="JN078_000635"
     CDS             18443..18883
                     /gene="hofO"
                     /locus_tag="JN078_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofO"
                     /protein_id="HAY9039941.1"
                     /translation="MNMFFDWWFATSPRLRQFCWAFWLLMLVTLIFLSSTHHEERDAL
                     IRLRASHHQQWATLYRLVDTTPFSEEKTLPFSPLDFQLPGAQLVSWHPSAQGGELALK
                     TLWEAVPSAFTRLAERNVSVSRFSLSVEGDDLLFTLQLETPHEG"
     gene            18873..19277
                     /gene="hofP"
                     /locus_tag="JN078_000636"
     CDS             18873..19277
                     /gene="hofP"
                     /locus_tag="JN078_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofP"
                     /protein_id="HAY9039942.1"
                     /translation="MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMV
                     GRGERIIGVIKDGQKKWRRVQQNDVLENGWTILQLTPDVLTLGTGTNCEPPQWLWQRQ
                     GDTNEAMDSRTTVDADTRRTGGKAAKSDADGG"
     gene            19189..20427
                     /gene="hofQ"
                     /locus_tag="JN078_000637"
     CDS             19189..20427
                     /gene="hofQ"
                     /locus_tag="JN078_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA uptake porin HofQ"
                     /protein_id="HAY9039943.1"
                     /translation="MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQE
                     KLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITRQEGNILSVHSIAWQNNNIA
                     RQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDN
                     KTALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT
                     LGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIK
                     QGSEIPYQVSSGESGATSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQVLQQA
                     DGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDG
                     KEYERRELVVFITPRLVSSE"
     gene            20828..21349
                     /gene="aroK"
                     /locus_tag="JN078_000638"
     CDS             20828..21349
                     /gene="aroK"
                     /locus_tag="JN078_000638"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004709337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroK"
                     /protein_id="HAY9039944.1"
                     /translation="MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG
                     ADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVY
                     LETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAK
                     VVANQIIHMLESN"
     gene            21406..22494
                     /gene="aroB"
                     /locus_tag="JN078_000639"
     CDS             21406..22494
                     /gene="aroB"
                     /locus_tag="JN078_000639"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HAY9039945.1"
                     /translation="MERIVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNET
                     LAPLYLDKVRGVLEQAGVNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVAL
                     GGGVVGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQP
                     ASVVVDLDCLKTLPPRELASGLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYC
                     IRRCCELKAEVVAADERETGLRALLNLGHTFGHAIEAEMGYGNWLHGEAVAAGMVMAA
                     RTSERLGQFSSAETQRIITLLKRAGLPVNGPREMSAQAYLPHMLRDKKVLAGEIRLIL
                     PLAIGKSEVRSGVSHELVLNAIADCQSA"
     gene            22586..23872
                     /gene="damX"
                     /locus_tag="JN078_000640"
     CDS             22586..23872
                     /gene="damX"
                     /locus_tag="JN078_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein DamX"
                     /protein_id="HAY9039946.1"
                     /translation="MDEFKPEDELKPDPSDRRTGRSRQSSERSERTERGEPQINFDDI
                     ELDDTDDRRPTRAQKERNEEPEIEEEIDESEDETVDEERVERRPRKRKKAASKPASRQ
                     YMMMGVGILVLLLLIIGIGSALKAPSTSSSDQTASGDKSIDLAGNATDQANGVQPAPG
                     TTSAENTQQDVSLPPISSTPTQGQTPAATDGQQRVEVQGDLNNALTQPQNQQQLNNVA
                     VNSTLPTEPATVAPVRNGNASRDTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEP
                     KPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTA
                     GNVGSLKSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGV
                     YASKEEAKKAVSTLPADVQAKNPWAKPLRQVQADLK"
     gene            23979..24815
                     /gene="dam"
                     /locus_tag="JN078_000641"
     CDS             23979..24815
                     /gene="dam"
                     /locus_tag="JN078_000641"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine-specific DNA-methyltransferase"
                     /protein_id="HAY9039947.1"
                     /translation="MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLN
                     TDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQ
                     DPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFF
                     YCESYADSMARADDASVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVE
                     RHIPVLISNHDTMLTREWYQRAKLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPA
                     KK"
     gene            24833..25510
                     /gene="rpe"
                     /locus_tag="JN078_000642"
     CDS             24833..25510
                     /gene="rpe"
                     /locus_tag="JN078_000642"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HAY9039948.1"
                     /translation="MKQYLIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVP
                     NLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASEHVDRT
                     LQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLRE
                     VRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSE
                     LAKVSHE"
     gene            25503..26261
                     /gene="gph"
                     /locus_tag="JN078_000643"
     CDS             25503..26261
                     /gene="gph"
                     /locus_tag="JN078_000643"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HAY9039949.1"
                     /translation="MNKFEDIRGVAFDLDGTLVDSAPGLAAAVDMALYALELPVAGEE
                     RVITWIGNGADVLMERALAWARQERATLRKTMGKPPVDDDIPAEEQVRILRKLFDRYY
                     SEVAEEGTFLFPHVADTLGALQAKGLPLGLVTNKPTPFVAPLLEALDIAKYFSVVIGG
                     DDVQNKKPHPDPLLLVAERMGIAPQQMLFVGDSRNDIQAAKAAGCPSVGLTYGYNYGE
                     AIDLSQPDVIYQSINDLLPALGLPHSENQESKND"
     gene            26254..27258
                     /gene="trpS"
                     /locus_tag="JN078_000644"
     CDS             26254..27258
                     /gene="trpS"
                     /locus_tag="JN078_000644"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HAY9039950.1"
                     /translation="MTKPIVFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQ
                     HAITVRQDAQKLRKATLDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFG
                     ELSRMTQFKDKSARYAENINAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDI
                     AQRFNALYGEIFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVK
                     KIKRAVTDSDEPPVVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGE
                     VADAVSGMLTELQERYHRFRNDEAFLQQVMKDGAEKASVHASRTLKAVYEAIGFVAKP
                     "
     gene            27527..28432
                     /locus_tag="JN078_000645"
     CDS             27527..28432
                     /locus_tag="JN078_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709156.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9039951.1"
                     /translation="MRRTFIKKEGVVITTLARYLLGEKCGNRLKTIDELATECRSSVG
                     LTQAALKTLESSGAIRIERRGRNGSYLVEMDNKALLSHVDINNVVCAMPLPYTRLYEG
                     LASGLKAQFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALE
                     LGPHTYVGEHQLICRKGESGNVKRVGLDSRSADQKIMTDVFFGDSDVERVDLSYHESL
                     QRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLL
                     RAVVDKHALLAHQQRVVSGEQEPSY"
     gene            28449..28811
                     /locus_tag="JN078_000646"
     CDS             28449..28811
                     /locus_tag="JN078_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417841.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HAY9039952.1"
                     /translation="METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTM
                     AMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEE
                     GYLLANLYGLWMAANEEV"
     gene            28895..30058
                     /locus_tag="JN078_000647"
     CDS             28895..30058
                     /locus_tag="JN078_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfX family PLP-dependent enzyme"
                     /protein_id="HAY9039953.1"
                     /translation="MFVEALKRQNPALISAALSLWQQGKIAPDSWVIDVDQVLENGKR
                     LIETARLYGIELYLMTKQFGRNPWLAEKLLALGYSGIVAVDYKEARVMRRAGLSVAHQ
                     GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRVQFVLLKVYSDDDFLY
                     PGQESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQAR
                     DQLAKSGIALEQLNAPSATSCTSLPLLAQYGVTHAEPGHALTGTIPANQQGDQSERIA
                     MLWLSEISHHFRGDSYCYGGGYYRRGHAQHALVFTPENQKITETNLKTVDDSSIDYTL
                     SLAGEFPVSSAVVLCFRTQIFVTRSDVVLVSGIHRGEPKIVGRYDSLGNSLGA"
     gene            30058..31284
                     /locus_tag="JN078_000648"
     CDS             30058..31284
                     /locus_tag="JN078_000648"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HAY9039954.1"
                     /translation="MARFVVLVIDSFGVGAMKDVTLVRPQDAGANTCGHILSQLPHLQ
                     LPTLEKLGLINALGYAPGDMQPSDSATWGVAELQHEGGDTFMGHQEILGTRPLPPLRM
                     PFCDVIDRVEQALVSAGWQVERRGDELQFLWVNQAVAIGDNLEADLGQVYNITANLSV
                     ISFDDAIKIGRIVREQVQVGRVITFGGLLTDSQRILDAAESKEGRFIGINAPRSGAYD
                     NGFQVVHMGYGVDKKVQVPQKLYEAGVPTVLVGKVADIVSNPYGVSWQNLVDSQRIMD
                     ITLDEFNTHPTAFICTNIQETDLAGHAEDVARYAERLQVVDRNLARLVDAMQPDDCLV
                     VMADHGNDPTIGHSHHTREVVPLLVYQQGLAATQLGVRTTLSDVGATVCEFFRAPPPQ
                     NGRSFLSSLRFAGDTL"
     gene            31281..32159
                     /locus_tag="JN078_000649"
     CDS             31281..32159
                     /locus_tag="JN078_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotriesterase-related protein"
                     /protein_id="HAY9039955.1"
                     /translation="MSFDPTGYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLM
                     TRGVRNVIEMTNRYMGRNAQFMLGVMRETGINVVACTGYYQDAFFPEHVVTRSVQELA
                     QEMVDEIEQGIDGTELKAGLIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTHTS
                     FSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYP
                     DEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGYDYLLTTFIPQLRQSGFSQ
                     ADVDVMLRETPSQFFQ"
     gene            32170..32523
                     /locus_tag="JN078_000650"
     CDS             32170..32523
                     /locus_tag="JN078_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417837.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2620 domain-containing protein"
                     /protein_id="HAY9039956.1"
                     /translation="MKKIGVAGLQREQIKKTIEATAPGSFEVFIHNDMEAAMKVKSGQ
                     LDYYIGACNTGAGAALSIAIAVIGYNKSCTIAKPGIKAKDEHIAKMIAEGKVAFGLSV
                     EHVEHAIPMLINHLK"
     gene            32535..33839
                     /locus_tag="JN078_000651"
     CDS             32535..33839
                     /locus_tag="JN078_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9039957.1"
                     /translation="MDLYIQIIVVACLTGMTSLLAHRSAAVFHDGIRPILPQLIEGYM
                     NRREAGSIAFGLSIGFVASVGISFTLKTGLLNAWLLFLPTDILGVLAINSLMAFGLGA
                     IWGVLILTCLLPVNQLLTALPVDVLGSLGELSSPVVSAFALFPLVAIFYQFGWKQSLV
                     AAVVVLMTRVVVVRYFPHLNPESIEIFIGMVMLLGIAITHDLRHRDENDIDASGLSVF
                     EERTSRIIKNLPYIAIVGALIAAVASMKIFAGSEVSIFTLEKAYSAGVTPEQSQTLIN
                     QAALAEFMRGLGFVPLIATTALATGVYAVAGFTFVYAVGYLSPNPMVAAVLGAVVISA
                     EVLLLRSIGKWLGRYPSVRNASDNIRNAMNMLMEVALLVGSIFAAIKMAGYTGFSIAV
                     AIYFLNESLGRPVQKMAAPVVAVMITGILLNVLYWLGLFVPA"
     gene            33851..34936
                     /locus_tag="JN078_000652"
     CDS             33851..34936
                     /locus_tag="JN078_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HAY9039958.1"
                     /translation="MKTFPLQSLTLIEAQQKQFALVDTICRHFPGAEFLTSGDLGLTP
                     GLNQPRITQRVEQVLADAFHAQAAALVQGAGTGAIRAGLAALLKPGQRLLVHDAPVYP
                     TTRVIIEQMGLTLITVDFNDLSALKQVVDEQQPDAALVQHTRQQPQDSYVLADVLATL
                     RAAGVPALTDDNYAVMKVARIGCECGANVSTFSCFKLFGPEGVGAVVGDADVINRIRA
                     TLYSGGSQIQGAQALEVLRCLVFAPVMHAVQAGVSERLLALLNGGEVPEVKSAVIANA
                     QSKVLIVEFHQPIAARVLEEAQKRGALPYPVGAESKYEIPPLFYRLSGTFRQANPQSE
                     HCAIRINPNRSGEETVLRILRESIASI"
     gene            complement(35088..35819)
                     /gene="phoB"
                     /locus_tag="JN078_000653"
     CDS             complement(35088..35819)
                     /gene="phoB"
                     /locus_tag="JN078_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417834.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator PhoB"
                     /protein_id="HAY9039959.1"
                     /translation="MSATDRYSHQLLYATVRQRLLDDIAQGVYQAGQQIPTENELCTQ
                     YNVSRITIRKAISDLVADGVLIRWQGKGTFVQSQKVENALLTVSGFTDFGVSQGKATK
                     EKVIEQERVSAAPFCKKLNIPGNSEVFHLCRVMYLDKEPLFIDSSWIPLSRYPDFDEI
                     YVEGSSTYQLFQERFDTRVVSDKKTIDIFAATRPQAKWLKCELGEPLFRISKIAFDQN
                     DKPVHVSELFCRANRITLTIDNKRH"
     gene            complement(35919..36704)
                     /gene="frlD"
                     /locus_tag="JN078_000654"
     CDS             complement(35919..36704)
                     /gene="frlD"
                     /locus_tag="JN078_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine 6-kinase"
                     /protein_id="HAY9039960.1"
                     /translation="MKTLATIGDNCVDIYPQLNKAFSGGNAVNVAVYCTRYGIQPGCI
                     TWVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELHDNDRVFGDYTEGVMADF
                     ALSEEDYAWLAQYDIVHAAIWGHAEDAFPQLHAAGKLTAFDFSDKWDSPLWQTLVPHL
                     DFAFASAPQEDETLRLKMKAIVARGAGTVIVTLGENGSIAWDGAQFWRQAPEPVTVID
                     TMGAGDSFIAGFLCGWSAGMTLPQAMAQGTACAAKTIQYHGAW"
     gene            complement(36701..37531)
                     /gene="frlC"
                     /locus_tag="JN078_000655"
     CDS             complement(36701..37531)
                     /gene="frlC"
                     /locus_tag="JN078_000655"
                     /EC_number="5.1.3.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine 3-epimerase"
                     /protein_id="HAY9039961.1"
                     /translation="MKTGMFTCGHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDL
                     KAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEM
                     NAGYTLISAAHAGYLTPPNVIWGRLAENLSELYEYAENIGMDLILEPLTPYESNIVCN
                     ANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGDKLRHLHIVDSDGASDTH
                     YIPGEGKMPLRELMRDIIERGYEGYCTVELVTMYMNEPRLYARQALERFRALLPEDER
                     "
     gene            complement(37581..38603)
                     /gene="frlB"
                     /locus_tag="JN078_000656"
     CDS             complement(37581..38603)
                     /gene="frlB"
                     /locus_tag="JN078_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417830.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine 6-phosphate deglycase"
                     /protein_id="HAY9039962.1"
                     /translation="MLDIDKSTVDFLVTENMVQEVEKVLSHDVPLVHAIVEEMVKRDI
                     DRIYFVACGSPLNAAQAAKHLADRFSDLQVYAISGWEFCDNTPYRLDDRCAVIGVSDY
                     GKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQADCIWEIHLLLCYSVV
                     LEMITRLAPNAEIGKIKNDLKQLPNALGHLVRTWEEKGRQLGELASQWPMIYTVAAGP
                     LRPLGYKEGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTTER
                     AINFVKQRTDNVIVIDYAEISQGLHPWLAPFLMFVPMEWLCYYLSIYKDHNPDERRYY
                     GGLVEY"
     gene            complement(38624..40012)
                     /gene="frlA"
                     /locus_tag="JN078_000657"
     CDS             complement(38624..40012)
                     /gene="frlA"
                     /locus_tag="JN078_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001324580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine/psicoselysine transporter"
                     /protein_id="HAY9039963.1"
                     /translation="MTANSPLQRVGQEKGIAMGSQELQRKLGFWAVLAIAVGTTVGSG
                     IFVSVGEVAKAAGTPWLTVLTFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGS
                     RPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDPLPGKFIAAGLIIAFMLLHL
                     RSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGI
                     SATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISDLMPFDKL
                     ANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFF
                     KCFGHVHPKYNTPDVSIILQGALGLFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWC
                     RKRDDYKPLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAF
                     WAKRSRQLNALS"
     gene            complement(40257..40424)
                     /locus_tag="JN078_000658"
     CDS             complement(40257..40424)
                     /locus_tag="JN078_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfL family protein"
                     /protein_id="HAY9039964.1"
                     /translation="MNKFIKVALVGAVLATLTACTGHIENRDKNCSYDYLLHPAISIS
                     KIIGGCGPTAQ"
BASE COUNT         9346 a        10256 c        11119 g         9704 t
ORIGIN      
        1 tgtggaataa aaaggccgga gatattctcc ggcactttta tgtcaggcaa ggcgttcgtt
       61 gccagatgcg gcgtgaacgc cttatcgcgc aggtttaggg gccagtccgg gcgtttaacg
      121 ttttttgccc attgccgccg ccagcgcatc catcatcgcg ctattaccgg caggctgcgc
      181 ttcacgaccg cgtggtttgg ctgccgggcg gttgttttgc gggcgttcat taccgccgcc
      241 gcgacgggcg ttggtttcgc caggctgctc gtccagacgc atagtcaggg cgatacgttt
      301 acgctgaaga tccacttcca gcactttcac cttcacaatg tcgcccgctt tcaccacggt
      361 atgcggatct tccacaaact tgttcgacaa tgaagagatg tgaaccaggc cgtcctgatg
      421 cacgccgata tcgacaaacg cgccaaagtt ggtgacgttg gtcaccgcac cttcgaggat
      481 catacccggt tgcaggtcgt tcattgtctc gacgccatcg gcaaactgag cggttttaaa
      541 ttccggacgc ggatcgcgac ccggtttttc cagctctttg atgatgtcag ttactgtcgg
      601 cacaccgaat ttttcatcag taaagtcaga cgctttcagg ttacgcagtt cgctgctgtt
      661 acccatcaga tctttcagtg cctgctgtgt tgctgccaga atgcgttcca ccaccggata
      721 ggcttccggg tggacggtag aagcatccag cgggttatca ccgtggttaa tgcgcaagaa
      781 gcccgcgcac tgctcgaagg ctttcggccc cagacggctg actttcagca gttgctgacg
      841 gttctggaac tggccgttct catcgcgcca ggccacgatg ttttgcgcca tcatgcgcgt
      901 caggcccgcc acgcgggtta acagcggaac agaagcagtg ttgagatcga cgccaacggc
      961 gtttacgcag tcttctacta ctgcgtccag tttgcgggcc agttgcgtct ggctgacgtc
     1021 atgctgatac tgacctacgc cgatagattt cggatcgatt ttcaccagct ccgccagcgg
     1081 atcctgcaaa cggcgggcga tagacaccgc gccacgcagc gaaacgtcga gatccgggaa
     1141 ctcctgcgct gccagctcgg aagctgagta aaccgacgcg ccagcttcgc tgacgatcac
     1201 tttctgtgcg gtcactttcg ggaactgctt ctgcacgtcg agatagaaac gttcagtttc
     1261 gcgggaagct gtaccgttgc cgatcgccac cagttcaacg ttatgttttt cacacaaggc
     1321 agcaacggtc atcgctgctt ttgcggcttg tccggtgtgc gggtaaatgg tatcggtcgc
     1381 taccagtttg ccagtggcat cgaccaccgc cacttttacc ccagtacgca gacccggatc
     1441 gaggcccatc gttgcacgca gtccggcagg ggccgccatc agcagatcgt gcaggttacg
     1501 ggcaaagacg ttgattgctt catcttccgc gcgttcgcgc acggtaccca tcagttcggt
     1561 ttccagatgc atcagcacct tgatgcgcca ggtccagctc actacgcctt tgcgccagct
     1621 atccgccggg gcattgttca ggcgcaggcc aaggtgatcc atgatgattt gctcgcaata
     1681 gctctctttg ggcggctcat cgaactgcgg atcggcattc agcgaaagct ggagtacgcc
     1741 ttcgttacgc ccacggaaca tcgccagagc gcggtgagaa ggcaccgtgg acaacggttc
     1801 gtgatgatcg aaatagtcgc ggaatttcgc cccttcctct tctttaccgc tcaccaccgt
     1861 agaaaccaaa tgcgcgttct tccacagata atcacgcact ttcgccagca gcgcggcatc
     1921 ttcggcaaac cgttccatca ggatatagcg cgcgccatcc agcgcggctt tggtatctgc
     1981 cacgccttta tcggcatcaa catattgtgc agcggcgact tctggcgtgt gtgacggatc
     2041 gctccacagc aggtcagcca acggctcaag ccctgcttca atggcgattt gcccgcgggt
     2101 gcggcgttta ggtttgtagg gcaggtagag gtcttcgagt tcggttttgc ttagggtggc
     2161 gttgatggcc ttcgccagat catcggtgag tttgccttgc tcggaaatgg acttgaggat
     2221 cgcctgacgt ctctcttcca gctcgcgcag atagctcaga cgcgtttcca gattacgcag
     2281 ctgcgtgtca tccagaccgc cggtgatttc cttacgataa cgtgtgataa acggcacggt
     2341 attcccttcg tcaagcaggc gaacggcagc gtcaacctgt tccgggcgcg cctgaatttc
     2401 acccgcaata atgcggcaga acgaatcatt catcatggtt tgagttcatc ttttcggatc
     2461 aaaaatcagg ggatagttat acggactggc tggcaaaaat gccagccatc ggcaggaggt
     2521 taagactctt ccttacggtt tcacgtactc gatagcatta acataccagc tcgcttcccc
     2581 ggcaggggta ttcaccaccg ccagatcgcc gacttctttt ttcagcaatg cgcgggccat
     2641 cggggaatcg atagagatgt aatctttacg gccaaaaatt tcatcgtagc cgacaatacg
     2701 gaaacggtga gtcacgccat cgtcgttttc aatctccacc cacgcgccaa aaaagacttt
     2761 gccttcctgc tgaggggagt aatcgacgat tttgagattt tccatgcatt tagtgagata
     2821 gcgcacgcga cggtcgattt cacgcagacg ctttttatta tactgatagt cagcattttc
     2881 gctgcggtcg cccagacttg cggcccaggt cacctttttt gtgacctccg ggcgttcttc
     2941 acgccagaga taattaagct cttgtttgag tttttcatac ccttcccggg taaccagggg
     3001 cgttttcatc tcgttgattc cctttgtctg tttgataatg cgcacattgg gtataacgtg
     3061 atcatatcaa cagaatcaat aatgtttcgc cgaataaatt gtatacttaa gctgctgttt
     3121 aatatgcttt gtaacaattt aggctgaaat tcataccaga tttagctggt gacgaacgtg
     3181 agctttttta agaatacacg cttacaaatt gttgcgaacc tttgggagta caaacaatgc
     3241 aagagaacta caagattctg gtggtcgatg acgacatgcg cctgcgtgcg ctgctggaac
     3301 gttatctcac cgaacaaggc ttccaggttc gaagcgtcgc taatgcagaa cagatggatc
     3361 gcctgctgac tcgtgaatct ttccatctta tggtactgga tttaatgtta cctggtgaag
     3421 atggcttgtc gatttgccga cgtcttcgta gtcagagcaa cccgatgccg atcattatgg
     3481 tgacggcgaa aggggaagaa gtggaccgta tcgtaggcct ggagattggc gctgacgact
     3541 acattccaaa accgtttaac ccgcgtgaac tgctggcccg tattcgtgcg gtgctgcgtc
     3601 gtcaggcgaa cgaactgcca ggcgcaccgt cacaggaaga ggcggtaatt gctttcggta
     3661 agttcaaact taacctcggt acgcgcgaaa tgttccgcga agatgagccg atgccgctca
     3721 ccagcggtga gtttgcggta ctgaaggcac tggtcagcca tccgcgtgag ccgctctccc
     3781 gcgataagct gatgaacctt gcccgtggtc gtgaatattc cgcaatggaa cgctccatcg
     3841 acgtgcagat ttcgcgtctg cgccgcatgg tagaagaaga tccagcgcat ccgcgttaca
     3901 ttcagaccgt ttggggcctg ggctacgtct ttgtaccgga cggctctaaa gcatgaggcg
     3961 attgcgcttc tcgccacgaa gttcatttgc ccgtacgtta ttgctcatcg tcaccttgct
     4021 gttcgccagc ctggtgacga cttatctggt ggtgctgaac ttcgcgattt tgccgagcct
     4081 ccagcagttt aataaagtcc tcgcgtacga agtgcgtatg ttgatgaccg acaaactgca
     4141 actggaggac ggcacgcagt tggttgtgcc tcccgctttc cgtcgggaga tctaccgtga
     4201 gctggggatc tctctctact ccaacgaggc tgccgaagag gcaggtctgc gttgggcgca
     4261 acactatgaa ttcttaagcc atcagatggc acagcaactg ggcggcccga cggaagtgcg
     4321 cgttgaggtc aacaaaagtt cgcctgtcgt ctggctgaaa acctggctgt cgcccaatat
     4381 ctgggtacgc gtgccgctga ccgaaattca tcagggcgat ttctctccgc tgttccgcta
     4441 tacgctggcg attatgctat tggcgatagg cggggcgtgg ctgtttattc gtatccagaa
     4501 ccgaccgttg gtcgatctcg aacatgctgc tttgcaggtc ggtaaaggga ttattccacc
     4561 gccgctgcgt gaatatggcg cgtccgaggt acgttcggtt acccgcgcct ttaaccatat
     4621 ggcggctggt gttaagcaac tggcggatga ccgcacgctg ctgatggcgg gggtaagtca
     4681 tgacttacgc acgccgctga cgcgtattcg cctggcgacc gagatgatga gcgaacagga
     4741 tggctacctg gccgaatcga tcaataaaga tatcgaagag tgcaacgcca tcattgagca
     4801 gtttatcgac tacctgcgca ccgggcagga gatgccgatg gaaatggcgg atctcaacgc
     4861 agtactcggt gaggttattg ctgccgaaag tggctatgag cgggaaattg aaaccgcgct
     4921 ttaccccggc agcattgaag tgaaaatgca cccgctgtcg atcaaacgcg cggtggcgaa
     4981 tatggtggtc aacgccgccc gttacggcaa tggctggatc aaagtcagca gcgggacgga
     5041 gccgaatcgc gcctggttcc aggtggaaga tgacggtccg ggaattgcgc cggaacaacg
     5101 taagcacctg ttccagccgt ttgtccgcgg cgacagtgca cgcaccatta gcggcacggg
     5161 attagggctg gcaattgtgc agcgtatcgt ggataaccat aacgggatgc tggagcttgg
     5221 caccagcgag cggggcgggc tttccattcg cgcctggctg ccagtgccgg taacgcgggc
     5281 gcagggcacg acaaaagaag ggtaaataaa cgggaggcga aggtgcctcc cgttttgctt
     5341 tctataagat actggataga tattctccag cttcaaatca ttacagtttc ggaccagccg
     5401 ctaccagcgc ggcacccgca ggggtgtcgg tgtatttatc gaagttgtcg ataaacagtt
     5461 tcgccagggt ttcggctttt tcctgccact gttccggaga agcgtaggtg ttacgcggat
     5521 cgagaatctt cgtgtctacg cccggcagtt cggttgggat cgccaggtta aacatcggca
     5581 gagtgaaggt ttctgcatta tccagcgaac cgttgaggat ggcgtcgata atggcgcggg
     5641 tatctttaat cgagatacgt ttgcctgtgc cgttccagcc agtgttaacc agataagcct
     5701 gcgcgcccgc cgcctgcata cgtttcacca gcacttctgc gtactgagtc gggtgcagcg
     5761 acaggaatgc cgcgccgaag caagcggaga aggttggcgt cggttcggtg atgccacgct
     5821 cagtaccggc cagtttggcg gtgaagccag agaggaagtg atactgggtt tgatcggcag
     5881 tcaggcgaga aaccggcggc aacacgccga aagcatcagc agtcaggaag ataaccttag
     5941 tcgcgtggcc cgctttggaa accggcttaa cgatgttatc gatgtgatag attggataag
     6001 aaacgcgggt gttctcggtt tttgaaccat catcaaagtc gatagtgcca tcttcacgca
     6061 cggtgacgtt ttccagcagc gcatcacgac ggatagcgtt gtagatttca ggttccgctt
     6121 ctttcgacag cttgatagtt tttgcgtagc agccgccttc gaaattaaac acgccgtcat
     6181 cgtcccagcc gtgttcgtca tcgccaatca ggcggcgttt cgggtcggtg gaaagggtgg
     6241 ttttaccggt gccggaaagg ccgaagaaca ccgcaacatc gcctttctcg ccaacgttgg
     6301 cggagcagtg catagaagcg atacctttca gcggcagcag gtagttcatc atcgagaaca
     6361 tccctttctt catttcgccg ccgtaccagg tgccgccaat cagctgcatg cgctcggtca
     6421 ggttaaacgc cacgaagttt tcggagttca gaccctgttc tttccactgc gggttagtgc
     6481 acttcgcgcc gttcataacg ataaagtctg gtttgaaacc tgccagctct tcatcgctcg
     6541 ggcgaataaa catgtttttg acaaaatgcg cctgccaggc cacttcggtg atgaaacgga
     6601 cggaaagacg agtatccggg ttcgcaccac agaaagcgtc gacaacgaac agacgtttgc
     6661 cggaaagctg cctggtcacc aggcctttca gatgctgcca ggtttccgga gagagaggtt
     6721 tgttgtcgtt cttacctttg cctttgtctg cccaccagaa agtatcgcga gtggtatcgt
     6781 cacggacgat atacttatct tttggtgaac gaccggtgaa gatcccggta tcgacggcaa
     6841 cggcacccag attagttaac accccgcgct cataacctgt caggctcgga tcgagctctt
     6901 cctgatacag caggtcgtag cttgggttgt aaacgatatc atgtacgtca ctgataccat
     6961 aagcctcgag ttcttgcggg gtcaaaccat tgttaacgcg catttcactg ctccttagcc
     7021 aatatgtatt gcctgaatag taaagtcttt ttgggggtgt taaccgcgac aaggctcata
     7081 gatttacgta tctggagaaa ttcatatttg acaaaaaacc ccgtgattcc tgttacgaaa
     7141 cggttgctat tatcgcagaa atagcatttt aggtgtggaa aatgttctca aaaggttaaa
     7201 tcttggttta tatggcggga atattgtgag tggaatcgca ttccttaatg aaattgatgc
     7261 aaattcaatc ggtaaagtat cgattcacca cgctaacttt ttttgattat tttctgaaaa
     7321 aagcaaaata ctactgcccg gatgcgataa ttaacccacc ttttgattct ggataaccaa
     7381 catggataac gttgaacttt caccggcaac acgctggggg atgattgcta ccggattact
     7441 tcaggggctg gtttgctacc tgttgatcgc ctggcttgcc ggaaaaaatc acagttggat
     7501 tgtttatggc gtgcctgcga ccgttgcgtt ttcatccgtt ttactcttct ccgtgatctc
     7561 ttttaaacag aagcgccttt ggggatggct ggcgctggtg tttattgcca cgacagggat
     7621 gagcggttgg ctgaagtggc aaactgatgg catgaacccc tggagagctg aaaaggcgat
     7681 ttgggatttt ggctgctatc tgctgttgat ggcaatgttg ttgctaccgt ggatacaaca
     7741 aagccttcgt atccgcaatt gcagtagccg ctatagctac ttttaccagt cagtatggca
     7801 taacgtactt atattactgg tgatttttct cgccaatggc ctgacgtggc tggtgctttt
     7861 actgtggggt gagttgttta aacttgttgg catcaagttt ttcaatacgc tcttttttgc
     7921 aaccgactgg tttatgtatc ttacattagg tctggttacc gcactggcgg tgattctcgc
     7981 gcgcacacag tcacgtttaa tcgactctat tcaaaagttg ttcacgttaa tcgccacggg
     8041 gttgctgccg ttagtatcat tgctaaccct gatgtttatc atcactctgc cgtttacggg
     8101 cctgagcgcg atttctcgcc acatctccgc cgccgggttg ctgttaacgc tggccttttt
     8161 gcaattgatc ttaatggcta ttgtccgcga tccgcaaaaa gcgtcacttc cctggacggg
     8221 gccgttgcgt tgcctgatta aaatcgcttt gctggttgct ccgctgtatg tgttcgtcgc
     8281 cgcctgggcg ttatggctgc gggtcgctca gtacggctgg actgtcgacc gcttgcaggg
     8341 cgcgctggcg gtgctggtgt tactggtgtg gtcgctgggg tattttgtca gtatcgtctg
     8401 gcgtaatggg caaaatcccc ttgtccttca gggcaaagtg aaccttgcgg tttcgttatt
     8461 ggtgttggtg atactggtgc ttcttaattc gccggtgctg gacagtatgc gtattagcgt
     8521 gaacagtcat atggcgcgtt atcagagcgg caaaaacacg ccagaccagg taactatcta
     8581 catgctcgaa cagagcggtc gctatggacg tgcggcgctt gagtcgctga aaagcgatgc
     8641 cgggtttatg aaagacccga aacgcgcgcg ggatctgctg atggcgttag atggagagca
     8701 acatcttcag gaacaggtat cggaaaaagt attagccgaa aatgtgttaa ttgcccctgg
     8761 ttctgttaaa ccggatgtga cattctggtc ggccttaatc caggatcgct ataacgtgat
     8821 gacctgtatt gaaaaagacg cctgcgtcct ggtcgagcaa gatctgaata gtgatggtca
     8881 ggcggagcgg atcctgtttg cttttaatga tgacagagtc attgtctatg gctttgactc
     8941 agacagaaaa gaatgggacg cgcttgatat gagtttactt ccgaacgaaa taacgaaaga
     9001 aaaattactc acagctgcga aggatggaaa actggggacg aggccgaaag cgtggcgcga
     9061 tctgacggta gatggtgaaa cgctggaaat aaacttaagt aagtgacaac gcttttatcg
     9121 gatacgacgc tgtatctgac caaaataatt tgcgatttat ttcataggcg ctggtaagcg
     9181 cagcacatca ggccattaag ttgtaaaatc cggcagagcc ctctctgccg gacatactca
     9241 ttaatgaact tgcggatctg ccggagacgc gttgttgcgg atttcagcaa tatccatcgc
     9301 attgaacaga tagtggttac cgcagtaatc acaatgcatg tcaatttcgc catcttccgc
     9361 caggatgcta tcaacttctt catcaggcag cgttttcagc gcatcggcgc aatgttcacg
     9421 cgagcaggtg catttgaact ccacatcctg cggatcgtaa accgtcacct cttcttcgtg
     9481 atacaaacgc cacaacactt cgtttgccgg taaggtcagc agttcttcgg ttttgatggt
     9541 ttcggttagc gtcgccaggt ggtcaaagtc gtcctgctgg gcattttgcg caggcattac
     9601 ctgcaacaac ataccgcctg cagccggttt gccgtctacg tcgccggtgc gaataaacag
     9661 gcgcgtcggc agctgttcag aacgcataaa gtaatcttcc aggcaggccg ccagggtatc
     9721 accttccaga ccaactacgc cctgatagcg ttcgccttcg ctcggggtaa tggtgatcac
     9781 cacgtaacca ttgccgacca gcgttttcag gtcggcattt tctggaattt cgccctgcac
     9841 gcgcgccaca ccgcgcattt gctggttatt gttaccgtta ataaccgcca gattcatcgg
     9901 accgtcgccc tgcagctgta cggtgatatc accatcaaac ttcagcgtag cggttaacag
     9961 gctggtcgca accagcagtt ctgccagcac gtttttaacg ggctgcggat aatcgtggtt
    10021 ctcaaggatc tgttgcaggg tttccgaaac ggttaccagt tcgccgcgaa cggcaaaatt
    10081 ttcaaacaga tagcgatgta attggtcatg ttgcggcata atcatctctc ttgcaggtga
    10141 cagttattca ctgtcgccgt gtttaaatcg taacaggtcg cggcgctctt ttttgtccgg
    10201 gcgtcggtcc gggtgcggca tggttaaggc attaagttta cgtgccatcg ccattttttc
    10261 gcgtttctct acactttccg cagtctcttc atacagcaag gctgcctcgc tggcggggcg
    10321 acgctgttca gtaatcgcct ttacaatcac cgtgcgttcg tcatttccct ggcgcagagt
    10381 gagcgtggca ttcagctcga cgattttgct cggcttgctg cgctgcccgt tgtaatgcac
    10441 cttaccgcct tcaatcattt cacgggccag cgcgcgggtt ttataaaaac gggcagccca
    10501 tagccattta tccagtcgaa cctcaacagc aggtttctct ttcatggcgt ctccttcaca
    10561 ttagcgaggg gatcaggcgg cggtagtcat tcagtgacgg atggcgttga tactgtttct
    10621 cggcaatccc ggaatcagga ttagtcacgc cgaggcagta acgaatacca aattgcgcgg
    10681 cagcatcgag aatcgcttcg ctgtcatcaa taaacagcgt tctttcagct ttcagacccg
    10741 tagcttcggc caccgcatgc cataaccgct gatcctcttt cggataacca aatgtgtggg
    10801 tggaaagtaa taaatcaagg tgtgcgtcca gacccgtatg ctcaagtttt accgccaggt
    10861 tgtgcggatg agcattggtg agcaaaattc gctgcttacc gctggctttc agtgcctcaa
    10921 gaaacggaat ggtatcttca cgcagtacgg cgcgcggtcc catctcggtg gtcattgcac
    10981 agatatccag acccagttgc tcactccagt aatcaagaca gtaccagttt agcgtatgct
    11041 gtacgtcgtg atattgctgg cgcatatatt ccatcgcttc ctgtggcgta accccgtttt
    11101 tcgcgcccca tgtttcaggc accagctttt gccagaaata gttatcgaag gcgaggtcga
    11161 gcaacgtgcc gtccatatcc agcagaacgg tatctacgtc ctgccaggca atgttgatat
    11221 gcatgaggga aatctccaga gtgaagcaat ttgcgcgaca gggtagcata acctgtcgcg
    11281 caaacgtgtt attcgataag gctttctgaa ggggtgatca gttgcgggtt caggcagctt
    11341 tcataatagg cctgaatctc catcatgcga gtgcgatgac gctggtaacg acgccaggcc
    11401 tgtacgccat tgtaaatggc gctacccagc atcgtcagta gcagcaatgt ggtgctgaga
    11461 tagcgccaca ggccggaacg atccgggatc ggatgaaggc caatatgctg cgtaccattg
    11521 gcgtcagtga agatttttgt gacgatacct tcggcgttaa acggcgtatg catcagcatt
    11581 tgtgccagtt tctggaaagc gttccactgt tcttgcggcg ggtagtcgta aagtgatgcc
    11641 gaaggccagg gctgatcaac aaaatcgctg ccttcgtcgc tgacaatcag gaatccgccg
    11701 ggggccggac tgtttagtga ttgtgccgct cgcgccgttt catgcgtgat aaacggcgcg
    11761 gtggaggttg ccaccaggtt atccagcgat tccgcactca ccgggcgtaa taacacattc
    11821 acgccatcga gcttcccggc gttggcgcgt tttaccagcg cgtcccagtc tttactgttg
    11881 ccgagattga ccagcgcatt tttcagtcgc acacagtcat ctttggcaga acataaatcc
    11941 gctgtcttca gtacaatgtc gccaaaatca tcaagcaata ccatgccgga tttttgaatc
    12001 gctgaacgta atgaggcact gacgcgagat tcatcttccg gtttagggtg cagctggcga
    12061 ttaactgctt cagtcaatgc cgtcgctttg ttgaccagtt cagattctgg taatggtaat
    12121 gagcgggcgt cattccagat gatctgcgag cagtcaaacg gtaaaaaagg tgaattggtt
    12181 ttcgcgctcc aggttccgga agtgcgaata ttacacattc ccgtaccgct aatacgcaat
    12241 gtatcgccta cccgcacgcc agcgtcagcc agttgtttta cgctggtggc ttcaatggtc
    12301 tgcgcgcctt tcatccatga gagagtgaat ttcagcggca tatccagcgg gatccagaat
    12361 aacagcataa acagcaccag cagcgagccc gcagcgataa tcgtactgcg cagccagtgc
    12421 tgtaacggaa agttttttac ttcatcatgc agcgaaagat atcgcccctg acgcactacg
    12481 tggcagtcga gatagatatc aatatcggtt tgttgatcga gatcctgagc aatgtatggc
    12541 tgccagtgtg cgggatagac caggtcgata ataccgagtg aaatattgtt gatctgttcc
    12601 tgatcgtttt cgccaaacaa tccccaacga cggggtgtac cgcgcagaca atgaatttcc
    12661 cgcagggagg attttgccgg gggcgcgaat agcccccaca gacctgcgcc cagcagcagt
    12721 aatgcgccgc ctgccagcca cggaacaaat acatccgggg taatcaggca gaaaaagaac
    12781 atcaggaagg aggcgacgat cagcaacgct tcacgcagcc cgcgcggacg actcagcgca
    12841 tattcttcat gcgtttcttt gcgaatattg agtagctcga tttgctcact ctcttccccg
    12901 cgaatcgacg cctgcgtgga cggaacaggt tgcaaggcat agccgcgcgt ttcctgcatg
    12961 tactcctgta gcgtatgacc gttgagtgaa ataaccaacg gcagcgaatc ggtatgaatc
    13021 agttcaacgg tattctcatc gttgatgtac tgttcccaga aggggggcag gtggacttct
    13081 accgaatcga ggtagtaacg ccatttattc ggatcgtcgg tagagatgcc gtaacgtgtg
    13141 atagcgtgtg tcagcatcat gacgttgttg ctttcggcat tcagcgccag agagatcggt
    13201 gccgcgctag ctcccgttgg gccaggcacc tgtaatacct gcgtcaggct ctcaagataa
    13261 ttttcaacgg cgctacgttc ttcaggtgtg agtttacgcg tttgcgcatc cgcgaaggcg
    13321 ttggtccagg gcagctgact ccgtctggat cgcactttta tcagccatcc cgcaagtagt
    13381 gagcaggcca gcaaagcagc taaaaaaatc acaatggtgc tcatgctttc cccatcttac
    13441 ttagtctgtc aggcgtggtc agtcgcacca gacacaatac atgattctgc ggttggctat
    13501 cggcaagcgt ggagtttaac ttgagcatca ttaagcacat cacagtaacc gctgatcata
    13561 gcaaaccctc tgaaggcgga atatcagcaa attcctagag ttatttcaac ctattgactt
    13621 ttaatttgat ttgaggacga ttatttatta agttacataa atgtaaataa catgcaattc
    13681 acattgccga aagcgtgtcc gatatcgcac aataaccgct gatttcacag catagatccc
    13741 acgatgagca aatcattaca aaaacccacc attctgaatg ttgaaactgt agcccgttcc
    13801 cgactgttta ccgtcgagag cgtggatctg gagttcagca atggcgtgcg gcgtgtttat
    13861 gaacgaatgc gtccaaccaa ccgggaagca gtgatgattg tgccgattgt ggacgatcac
    13921 ctgatcctga tccgcgaata cgcagtggga actgaatcct acgaattagg tttttcgaaa
    13981 ggattaattg atccgggtga aagcgtctac gaagccgcta accgcgagct aaaagaagag
    14041 gttggatttg gtgcgaacga tctgactttt ttgaagaagc tcagcatggc accgtcttac
    14101 ttttccagca aaatgaatat cgtggtcgcg caagatctct acccggaatc gctggaaggc
    14161 gatgagccag agccgctacc acaggtgcgc tggccgctgg cgcatatgat ggatttgctg
    14221 gaagaccctg acttcaacga agcgcgtaat gtcagcgcgc tgttcctcgt gcgcgaatgg
    14281 ttgaaagggc aggggcgagt gtaaatgcgt gaagtttgcc tgatgcacaa cgcttatcag
    14341 gcttatgggg ttcctgcaat atattgattt ttcacgattt tgttagccgg gtaacgcggt
    14401 cacccgcatc cagcataaac aaatgcactt tgtcagccaa ctgaaaaggc gccgaagcgc
    14461 ctttttaatc agaacaattc ctgtgcctca ccattatcga taatggtcgt tcccacctcg
    14521 tgcaccgcct gttgtgtcgg ctgcgtacct tcgatgaaat actcttcgcg gctgttgcca
    14581 ccattagcta actgcccggt gctgcgatcg atattcaccg tcacaatacc cggtggcggc
    14641 gtcagcggct gctccggcac accttcaaga acggctttca tataagcgtc ccatgcaggc
    14701 tgggcactct tggctccgcc ttcgtaacct gagatctgat ctttaatcgc tccggaagcc
    14761 gttgtatgac cgagattacg acggtgatca tcaaagccaa tccagaccga ggtcacaacg
    14821 cccggaccgt aacccgagaa ccacgcatct ttcgaactgt tagtggtacc ggttttcccg
    14881 ccgatatcgc gacgctgcaa atcacgacct gcacgccagc cagtaccctg ccagcctggc
    14941 tcaccaaaga tattggtgtt caaagcactc ttaatcagga atgccagcgg agtgttgatg
    15001 acgtgcggtg cgtactcctg cgcgccagtc ttcgccacta acgcctgatt tgcctgctcc
    15061 agctgcggca ttggtacaga aacattctgc tgctcgcggg agatagcgac atcttcaaca
    15121 tcgttatttt ccagcacgtt cgatttctgc gtatcaccgt aaatcaccgg aatatcgcat
    15181 tccgggcagg ctactttcgg tttcgcttcg aaaatcacgc cgccctgatc gttttcaatt
    15241 ttgctgataa accacgggtc caccaggaag ccgccgttcg ccatgaccgc gtagccgcgc
    15301 gccacctgca ttggggtgaa ggacgctgaa cccagcgcca gcgattcggt gtggacaatg
    15361 ttttgcgccg ggaagccgaa gcgttgcaga tattctgcag cgtagtcgac gcccatagcc
    15421 cgcattgcac gtaccatcac cacgtttttc gactgaccca gcccctgacg taagcgaatt
    15481 ggaccagcat attgtggcgg cgagtttttc ggctgccagt cagaaccggc acctgcgtcc
    15541 cagcgagaaa ttggcacatc gttcaacata cttgccagcg tcagaccttt atccatcgcc
    15601 gcggtgtaga ggaacggttt gatgttggaa cccacctgac gcagtgcctg ggtggcgcgg
    15661 ttaaacttgc tctgattgaa atcaaagcca ccgaccagcg ccataacggc accgttttgc
    15721 ggattgatcg acaccagcgc cgagttcact tccggcactt gtgccagcca ccatgcatcg
    15781 ccaacctgac gaacccagat ttgctgaccc gtttgcagaa catcggtcac tttacgcggc
    15841 gtcggtccct gctgagtatc cgaacggtaa ggacgcgccc agcgaacgcc ttccatactc
    15901 aatgcgacgg tcgacccgtc cgccagcatc gccgtcgctc cctgaggatt ggcgctggtg
    15961 actgcggcag gcagcagcgg accataggtc ggcagcgcct tcagcgtatc ggtaatcttg
    16021 ttgttatccc acgccgactc gcccactttc cacagcacat ttgccgggcc gcgatagccg
    16081 tggcgcatgt cgtagtccag cacgttatta cgtaccgcct gctgtgcggc ctgctgcact
    16141 ttgcgggtga tggtggtgta aatgcgataa ccgtcttcat aggcactttc gccataacgg
    16201 ttatacatct cctggcgcac catttcgctc aggtacggcg cagagaaagc aatctccggc
    16261 gcgtgatagt tagcgttaat cgcctcagtg cgtgtctgat cgaactgttg ttgggtgata
    16321 tacccttcat ccagcatccg cgacagtacg acgttacgcc gcgcgacggc acgatccatt
    16381 gagtagagcg gattaaaggt ggaaggcgct ttcggcagcc cggctatcac agccatttcg
    16441 ttcagcgtca gttggtcgac cgttttaccg aaatagactt gtgccgcagc accgacacca
    16501 taggcgcggt aaccgaggta aatcttattc agataaagct cgaggatctc gtctttcgtc
    16561 agcaactgtt caatgcgaat cgcgaggaag acttccttaa tcttacgcat cagcgtgcgt
    16621 tctggactga ggaagaagtt tctcgccagc tgctgggtaa tggtactcgc cccttgtgac
    16681 gcgtggccgg agaacagcgc cacacttgcc gcacggaaga tccccaccgg gtcaacgccg
    16741 tgatgctcgt agaagcggct gtcttccgtc gcgataaagg ctttcaccat ctccggcggg
    16801 atttgatcca acgtaaccgg aatacgacgt ttctcaccgt attgagcaat cagctcgcca
    16861 tcggcgctgt aaatctgcat cggaatttgc aggcgaacat cttttaatgt cgccacatcc
    16921 ggcagttgtg gctcgatgta gcggtatagg ccataaatcg agcctgctcc cagcagaatg
    16981 caacagactg caaggatcaa aaaatacttt acgaacttca ctggaaattt cccatttagt
    17041 ttcatttggg cagtttataa acaaacgcgc ggtagtataa aggcaagcca gacgcattga
    17101 tatacccgtc agagtgacgg gtgataagga gatcatcaca atggcattta agatctggca
    17161 aattggtttg catttacaac agcaagaagc ggtagcggtt gcgatcgtgc ggggcgcaaa
    17221 agaatgcttt ttgcaacgct ggtggcggtt gccgctggag aacgacatta tcaaagatgg
    17281 gcggattgtt gatgcgcagc agctggctaa aacgttgtta ccttggagtc gcgaactgcc
    17341 gcagcgtcat cacattatgt tggcgtttcc cgccagtcgc acattacagc ggtcatttcc
    17401 gcgcccgtcg atgtcccttg gtgagcggga gcaaacggcc tggctgtcag ggacgatggc
    17461 ccgcgagctg gatatggatc cggactccct gcgcttcgat tacagcgaag actcactcag
    17521 tcccgcctat aacgtgactg ccgcgcaaag caaagagctg gcaacgctgc ttactctggc
    17581 agaaaggttg cgtgttcatg ttagtgcgat caccccggat gccagtgcat tacagcgatt
    17641 cctgcctttt ttaccttctc atcagcaatg tctggcctgg cgtgataacg aacagtggct
    17701 gtgggcgacg cgctatagct gggggcgcaa actggcggtg gggatgacta gcgcgaagga
    17761 gctggcggca gcgttattcg ttgatcccga cagcgtcgcg atatgtggcg aaggcggatt
    17821 tgacccctgg gaggccgttt ctgttcgtca gccgctgcta ccgccgcctg gtggagactt
    17881 tgccatcgcg ctggggctgg cgcttgggaa ggcgtactga tgaacccgcc aattaatttt
    17941 ttgccctggc gacagcaacg ccggaccgct tttctgcgtt tctggttgct gatgttcgtt
    18001 gcgcctctgc tgctggccgt cgggataacg ctaatactgc gtctgacagg cagcgccgaa
    18061 gcgcgcatag acgcagtttt gcttcaggcg gaacaacaac tcgcccgcag cttacagata
    18121 acgaagccac gtttgctgga gcaacagcag ttacgcaaac agcgttcgca acggcagcgc
    18181 cagcgacaat ttacccgcga ctggcaatct gcgctggaag cactggcggc gcttttaccc
    18241 gagcacgcct ggctgacaac gataagctgg cagcagggaa cgctggagat caaggggctg
    18301 acaacaagca ttaccgcgtt aaacgcacta gaaacgtcac tccgccagga tgcgtctttt
    18361 catctcaatc agcggggagc cacgcagcag gatgcgcagg gacgctggca atttgagtat
    18421 cagttaacaa ggaaggttag cgatgaacat gttctttgac tggtggttcg ccacatcacc
    18481 ccgcctccgc cagttttgct gggcattctg gttgctgatg ttagttacgc tcatttttct
    18541 gtcatcgaca caccatgaag agcgcgacgc attaattcga ttacgggcaa gtcatcacca
    18601 gcagtgggcc acactgtatc gcctggttga caccactccc ttcagcgaag aaaaaacgct
    18661 gcccttttcg ccactggatt ttcagttgcc cggcgcgcaa ctggtttcct ggcatccatc
    18721 cgcgcaggga ggtgagttgg cgttgaaaac gctgtgggaa gcagtgccgt cggcattcac
    18781 acggctggca gagcgcaacg tcagcgtgag ccgtttttcg ttaagcgtgg aaggtgatga
    18841 tcttttgttc acgctacaac tggagacgcc gcatgagggt taaacgctgg ttgttggcag
    18901 gtattgcatt gtgcctttta accggtatgc gtgacccttt taaaccgccg gaagatctat
    18961 gccggattag cgaacttagc cagtggcgct atcaggggat ggtagggcga ggcgagcgca
    19021 tcatcggtgt aataaaagac gggcaaaaga aatggcgacg ggtgcagcaa aacgatgtgc
    19081 tggaaaacgg ctggacaatt ttacagctga cgccagacgt actaacgctg ggtaccggga
    19141 caaactgcga accgccacaa tggttgtggc aacggcaagg agatacaaat gaagcaatgg
    19201 atagccgcac tactgttgat gctgataccc ggcgtacagg cggcaaagcc gcaaaaagtg
    19261 acgctgatgg tggatgacgt tccggtagct caggtgttgc aggcgctggc tgaacaggag
    19321 aagttgaacc tggtcgtgtc gccagacgtc agcggtacgg tgtcgttaca tctaacagat
    19381 gttccctgga agcaggcact acaaactgta gtgaaaagcg ccggactgat aacgcggcag
    19441 gaaggcaaca ttctctcagt gcattccatt gcctggcaga ataacaatat cgcccgccag
    19501 gaggcggagc aggcgcgggc gcaggcaaat ctgccgctgg aaaatcgcag tataaccctg
    19561 caatacgccg acgcgggaga actggcgaaa gcgggggaga agctactgag tgccaaaggg
    19621 agtatgaccg tcgataaacg caccaatcgc cttttgctac gagataacaa aacggcgtta
    19681 agcgcgcttg aacagtgggt agcgcaaatg gatctgccgg tcgggcaggt tgagctgtcg
    19741 gcgcatattg tcaccattaa tgaaaaaagt ttgcgtgagt taggcgtgaa atggacgctg
    19801 gccgatgcgc aacacgctgg tggcgttggg caagtcacca cgcttggtag cgacctctcc
    19861 gtagcgacgg cgacaacgca tgtcggtttt aacattgggc gcatcaacgg acgcttgctg
    19921 gatcttgagc tttccgcgct cgaacaaaaa cagcagctgg atattatcgc cagtccgcgt
    19981 ctgctggcct cacatcttca gcctgccagc attaaacagg ggagcgaaat tccatatcag
    20041 gtttccagcg gggaaagtgg cgcgacgtcg gtggaattta aagaggccgt cctggggata
    20101 gaggtcacgc ccacggtgtt acaaaaaggt cgcatccggc tgaaattaca catcagccag
    20161 aacgttccgg ggcaggtgct acagcaggcc gatggcgaag tgctggcgat tgataagcag
    20221 gagatcgaaa cgcaggtcga ggtcaaaagc ggagaaacgt tggcgctggg cggcattttt
    20281 acccgtaaaa ataaatcggg tcaggatagc gtaccgttgc ttggcgacat tccctggttc
    20341 gggcaattat ttcgtcatga cggaaaagaa tatgaacgac gcgagttagt ggtgtttatc
    20401 acgccacgac tggtttccag tgagtaaaca gccgtaaaag cggtaatgtt tttatgctga
    20461 acgtgtttca tctatttgac gcgcgcaggt atttagcata caaggagtac cgatttgaga
    20521 gttggcgctc ttcgctgcct gcgttccatg atgatgattt atcattcagg cggcattttg
    20581 ctgtcttttt tacgctaatc ttacccggtg atttatcgcc agagcggtgg tagcaaggca
    20641 gcgcgcttgc agcgaccaga tatgcagagg gatgggtgat ttattcagtt gccaaacccg
    20701 ctggagtatt gagataattt tcagtctgac tctcgcaata tcttatgagg tttcagttca
    20761 tgtcctgcgg cgctctctga gcgaagcggg tttatcatta acgaatagtc ttagtagtac
    20821 cgaaaaaatg gcagagaaac gcaatatctt tctggttggg cctatgggtg ccggaaaaag
    20881 cactattggg cgccagttag ctcaacaact caatatggaa ttttacgatt ccgatcaaga
    20941 gattgagaaa cgaaccggag ctgatgtggg ctgggttttc gatttagaag gcgaagaagg
    21001 cttccgcgat cgcgaagaaa aggtcatcaa tgagttgacc gagaaacagg gtattgtgct
    21061 ggctactggc ggcggctctg tgaaatcccg tgaaacgcgt aaccgtcttt ccgctcgtgg
    21121 cgttgtcgtt tatcttgaaa cgaccatcga aaagcaactt gcacgcacgc agcgtgataa
    21181 aaaacgcccg ttgctgcacg ttgaaacacc gccgcgtgaa gttctggaag cgttggccaa
    21241 tgaacgcaat ccgctgtatg aagagattgc cgacgtgacc attcgtactg atgatcaaag
    21301 cgctaaagtg gttgcaaacc agattattca catgctggaa agcaactaat tctggcttta
    21361 tatacactcg tctgcgggta cagtaattaa ggtggatgtc gcgttatgga gaggattgtc
    21421 gttactctcg gggaacgtag ttacccaatt accatcgcat ctggtttgtt taatgaacca
    21481 gcttcattct taccgctgaa atcgggcgag caggtcatgt tggtcaccaa cgaaaccctg
    21541 gctcctctgt atctcgataa ggtccgcggc gtacttgaac aggcgggtgt taacgtcgat
    21601 agcgttatcc tccctgacgg cgagcagtat aaaagcctgg ctgtactcga taccgtcttt
    21661 acggcgttgt tacaaaagcc gcatggtcgc gatactacgc tggtggcgct tggcggcggc
    21721 gtagtgggcg atctgaccgg cttcgcggcg gcgagttatc agcgcggtgt tcgtttcatt
    21781 caagtcccga cgacgttact gtcgcaggtc gattcctccg ttggcggcaa aactgcggtc
    21841 aaccatcccc tcggtaaaaa catgattggc gcgttctacc agcctgcttc agtggtggtg
    21901 gatctcgact gtctgaaaac gcttcccccg cgtgagttag cgtcggggct ggcagaagtc
    21961 atcaaatacg gcattattct tgacggtgcg ttttttaact ggctggaaga gaatctggat
    22021 gcgttgttgc gtctggacgg tccggcaatg gcgtactgta ttcgccgttg ttgtgaactg
    22081 aaggcagaag ttgtcgccgc cgacgagcgc gaaaccgggt tacgtgcttt actgaatctg
    22141 ggacacacct ttggtcatgc cattgaagct gaaatggggt atggcaattg gttacatggt
    22201 gaagcggtcg ctgcgggtat ggtgatggcg gcgcggacgt cggaacgtct cgggcagttt
    22261 agttctgccg aaacgcagcg tattataacc ctgctcaagc gggctgggtt accggtcaat
    22321 gggccgcgcg aaatgtccgc gcaggcgtat ttaccgcata tgctgcgtga caagaaagtc
    22381 cttgcgggag agatacgctt aattcttccg ttggcaattg gtaagagtga agttcgcagc
    22441 ggcgtttcgc acgagcttgt tcttaacgcc attgccgatt gtcaatcagc gtaacaacaa
    22501 gaaaggtcag gccgcttatc aagcggtcta ttagcttcag gttaattgca acgtggtaag
    22561 cattaacctt ttagtggggt gttaaatgga tgaattcaaa ccagaagacg agctgaaacc
    22621 cgatcccagc gatcgtcgta ctggtcgttc tcgtcaatct tctgaacgtt ctgagcgtac
    22681 tgaacgtggc gaaccgcaga tcaattttga tgatattgaa cttgatgaca ctgacgatcg
    22741 ccgtccgact cgtgcgcaaa aagagcgcaa tgaggaaccg gaaatcgaag aagaaattga
    22801 cgaatccgaa gatgaaaccg tggatgaaga gcgcgtagag cgtcgtccgc gtaagcgcaa
    22861 aaaagcagcc agtaaacccg cttctcgtca gtatatgatg atgggcgtcg gcattctggt
    22921 tctactgctg ttgatcatcg gtatcggttc tgcgctaaaa gccccctcga cctcttccag
    22981 cgatcaaacc gcgtctggcg ataagagtat tgatcttgca ggcaatgcga ccgatcaggc
    23041 gaatggggtg cagccagcgc cgggaaccac gtctgcggaa aatactcagc aggatgtttc
    23101 tctgccaccg atctcttcta cgccgactca agggcaaacc ccggcggcaa cggatggtca
    23161 acaacgtgtt gaagtgcagg gtgacctgaa caatgcgctg actcagccac aaaatcagca
    23221 acagttgaac aatgtggcgg tcaattccac attgccgacc gaacccgcga ctgtcgcgcc
    23281 tgttcgcaat ggcaatgcat cgcgtgacac ggcgaaaacg caaaccgctg aacgtccgtc
    23341 cactacgcgc ccagctcgtc agcaggcggt gattgaaccg aaaaaaccgc aagcaaccgt
    23401 gaaaacggag ccgaagccgg tagcacagac gccgaagcgt actgaaccag ctgcccctgt
    23461 ggcgagcacg aaggcaccgg ctgcgacttc tacgccagca ccaaaagaga cggcgactac
    23521 ggctccagta cagacggcat ccccggcgca aaccacggca acaccagccg ctggagggaa
    23581 gaccgcaggt aatgttggtt cgttgaaatc ggcaccgtcc agccattaca ctctgcagct
    23641 gagcagttcc tctaactacg acaacctgaa cggttgggcg aagaaagaga atctgaaaaa
    23701 ctacgttgtc tatgaaacga cgcgtaatgg tcagccgtgg tatgtcctgg tttctggcgt
    23761 gtacgcttcg aaagaagagg cgaaaaaagc ggtatctaca ttgccagcag atgttcaggc
    23821 caaaaacccg tgggcgaaac cgctgcgtca ggtacaggcc gatctgaagt aatcaaggtt
    23881 atctcccgca atggtttatc gttgcgggag ctgcctgaag cgctggatgc tgtcggagct
    23941 ttctccacag ccggagaagg tgtaattagt tagtcagcat gaagaaaaat cgcgcttttt
    24001 tgaagtgggc agggggcaag tatcccctgc ttgatgatat taaacggcat ttgcccaagg
    24061 gcgaatgtct ggttgagcct tttgtaggtg ccgggtcggt gtttctcaac accgactttt
    24121 ctcgttatat ccttgccgat atcaatagcg acctgatcag tctctataac attgtgaaga
    24181 tgcgtactga tgagtacgta caggccgcac gcgagctgtt tgttcccgaa acaaattgcg
    24241 ccgaggttta ctatcagttc cgcgaagagt tcaacaaaag ccaggatccg ttccgtcggg
    24301 cggtactgtt tttatatttg aaccgctacg gttacaacgg cctgtgtcgt tacaatctgc
    24361 gcggtgagtt taacgtgccg tttggccgct acaaaaaacc ctatttcccg gaagcagagt
    24421 tgtatcactt cgctgaaaaa gcgcagaatg cctttttcta ttgtgagtct tacgccgata
    24481 gcatggcgcg cgcagatgat gcatccgtcg tctattgcga tccgccttat gcaccgctgt
    24541 ctgcgaccgc caactttacg gcgtatcaca caaacagttt tacgcttgaa caacaagcgc
    24601 atctggcgga gatcgccgaa ggtctggttg agcgccatat tccagtgctg atctccaatc
    24661 acgatacgat gttaacgcgt gagtggtatc agcgcgcaaa attgcatgtc gtcaaagttc
    24721 gacgcagtat aagcagcaac ggcggcacac gtaaaaaggt ggacgaactg ctggctttgt
    24781 acaaaccagg agtcgtttca cccgcgaaaa aataattctc aaggagaagc ggatgaaaca
    24841 gtatttgatt gccccctcaa ttctgtcggc tgattttgcc cgcctgggtg aagataccgc
    24901 aaaagccctg gcagctggcg ctgatgtcgt gcattttgac gtcatggata accactatgt
    24961 tcccaatctg acgattgggc caatggtgct gaaatccttg cgtaactatg gcattaccgc
    25021 ccctatcgat gtacatctga tggtgaaacc cgtcgatcgc attgtgcctg atttcgctgc
    25081 cgctggtgcc agcatcatta cctttcatcc agaagcctcc gagcatgttg accgcacgct
    25141 gcaactgatt aaagaaaatg gctgtaaagc gggtctggta tttaacccgg cgacacctct
    25201 gagctatctg gattacgtga tggataagct ggatgtgatc ctgctgatgt ctgttaaccc
    25261 aggttttggc ggtcagtcgt tcattccaca aacactggat aaactgcgcg aagtacgtcg
    25321 tcgtatcgac gagtctggtt ttgacattcg actggaagtg gacggtggcg tgaaggtgaa
    25381 caacattggc gaaatcgctg cggcgggcgc ggatatgttc gtcgccggtt cggcaatctt
    25441 cgaccagcca gactacaaaa aagtcattga tgaaatgcgc agtgaactgg caaaggtaag
    25501 tcatgaataa gtttgaagat attcgcggcg tcgcttttga tctcgacggt acgctggttg
    25561 acagtgctcc cggtcttgct gctgcggtag atatggcgct gtatgcgctg gagttacccg
    25621 tcgcaggtga agaacgcgtt attacctgga ttggtaacgg cgcagatgtt ctgatggagc
    25681 gtgcattggc ctgggcgcgt caggaacgtg cgactctgcg taaaacaatg ggtaaaccgc
    25741 ccgttgatga cgacattccg gcagaagaac aggtacgtat tctgcgtaaa ctgttcgatc
    25801 gctactatag cgaggttgcc gaagagggga cgtttttgtt cccgcacgtt gccgatacgt
    25861 tgggcgcgtt gcaggctaaa ggcctgccgc taggcctggt caccaacaaa ccgacgccgt
    25921 tcgtcgcgcc actgctcgaa gccttagata ttgccaaata ctttagcgtg gttatcggcg
    25981 gcgatgatgt gcaaaacaaa aaaccgcatc cggacccgct gttactggtg gctgagcgga
    26041 tgggaattgc cccacaacag atgctgtttg tcggcgactc acgcaatgat attcaggcgg
    26101 caaaagcggc aggttgccca tcagttggct taacctacgg atataactac ggcgaggcta
    26161 tcgatctcag ccagcctgat gtaatttatc agtctataaa tgaccttctg cccgcattag
    26221 ggcttccgca tagcgaaaat caggaatcga aaaatgacta agcccatcgt ttttagtggc
    26281 gcacagccct caggtgaatt gaccattggt aactacatgg gtgcgctgcg tcagtgggta
    26341 aacatgcagg atgactacca ttgcatttac tgtatcgttg accaacacgc gatcaccgtg
    26401 cgccaggatg cacagaagct gcgtaaagcg acgctggata cgctggcctt gtatctggct
    26461 tgtggtatcg atcctgagaa aagcaccatt tttgttcagt cccacgtacc agaacatgcg
    26521 cagttaggct gggcactgaa ctgctatacc tacttcggcg aactgagccg catgacccag
    26581 tttaaagata aatctgcgcg ttatgccgag aacatcaacg ctggtctgtt tgactatccg
    26641 gtgctgatgg ctgcggacat cctgctgtat caaactaatc tggtaccggt gggtgaagac
    26701 cagaaacagc acctggaact gagtcgcgat atcgcccagc gtttcaacgc gctgtatggc
    26761 gagatcttta aggtgccgga gccgtttatt ccgaaatctg gcgcgcgcgt aatgtcgctg
    26821 ctggagccga ccaagaagat gtccaagtct gacgataacc gcaataacgt tatcggcctg
    26881 ctggaagatc cgaaatcggt agtgaagaaa atcaaacgcg cggtcactga ctccgacgag
    26941 ccgccggtag ttcgctacga tgtgcagaac aaagcgggcg tttccaacct gctggatatc
    27001 ctttctgcgg taacgggcca gagcatccca gaactggaaa aacagttcga aggcaagatg
    27061 tatggccatc tgaaaggtga agtggctgat gccgtttccg gtatgctgac tgaattgcag
    27121 gaacgctatc accgtttccg caacgatgaa gccttcctgc aacaggtgat gaaagacggc
    27181 gcagaaaaag ccagtgtaca cgcttcccgt acgctgaaag cggtgtacga agcgattggt
    27241 tttgtggcga agccgtaata tcaaaacgct cggacggtcc cctcgcccct ttggggagag
    27301 ggttagggtg aggggagcag gcaagcgcca gtgggaatta ccctttgctc gcattgtcga
    27361 ataaatcact tcgtcatcac tctgaaaccg gggaaacccg gtttttttat cctcatttgc
    27421 aataatccga aaaaatgtga agcgcctcgc cgtttccaca tctcacagtt gccacttatc
    27481 ttcattttaa tgaagatata aacattcatt ttattgaaaa tatattatgc gtcgaacgtt
    27541 tatcaaaaaa gaaggcgtcg tcatcacgac gctggcccgt tatttgttgg gtgaaaaatg
    27601 cggtaatcga ctgaaaacca tagatgagct ggcaactgaa tgccgttcat cggttggcct
    27661 gacgcaggcc gcgttgaaaa cgttggaatc aagtggagcg atacggattg aacgccgtgg
    27721 gcgcaatggc agttatctgg tcgaaatgga taacaaagcg ctgctgagtc atgtggatat
    27781 caataacgtt gtgtgtgcca tgcctttgcc ctatacccgc ttgtacgaag gtttagcaag
    27841 cgggctgaaa gcccagtttg atggcattcc tttttattat gcgcatatgc gtggcgcgga
    27901 tattcgtgtg gagtgtttgc ttaacggtgt ctatgacatg gcagtagttt cccgcctggc
    27961 ggcggaaagt tatctcagcc aaaacaattt gtgcatcgcc ctcgagcttg gcccgcatac
    28021 gtatgttggt gaacatcaac tgatatgccg caaaggtgag tctggaaatg ttaagcgagt
    28081 aggtctcgat agtcgttcgg cggatcagaa aatcatgacc gatgtctttt ttggcgatag
    28141 tgatgtggaa cgtgtcgatc tctcttatca cgagagttta caacgcattg ttaaaggcga
    28201 tgtcgatgcg gttatctgga acgtggtggc ggaaaacgaa ctgaccatgc tgggattaga
    28261 ggcgacgccg ctcacagacg atccgcgatt tttacaggcc accgaagccg tggtcctgac
    28321 gcgagtcgat gattacccaa tgcaacaact gctgcgtgcc gttgtagata aacacgccct
    28381 gctcgcccat caacaacggg tagtgagtgg ggaacaggaa ccgagttatt aaacgaaagg
    28441 catctgatat ggaaaccaga ctcaacctgc tttgcgaggc aggcgttatt gataaggaca
    28501 tctgcaaagg catgatgcag gtcgtcaacg tactggaaac agagtgccat ctgccggtgc
    28561 gcagtgagca aggaacgatg gcgatgacac atatggcgag tgcactgatg cgcagtcgcc
    28621 gtggtgaaga aatagagccg ctggataacg aattgctggc agagctggcg caatccagcc
    28681 actggcaagc cgttgtgcaa ttgcatcagg tgttgttgaa ggaattcgca ctggaagtta
    28741 atccgtgtga agaaggctat ttgctggcca acctttatgg attatggatg gctgctaacg
    28801 aagaggtttg aagctcccga caaatccacg tcgcacaacc taaatattca aaaaaatgaa
    28861 tatttaattc aaggaacaga aacgaggcaa caagatgttt gtagaagcat tgaaacgcca
    28921 gaacccggcg ctgatttccg ccgcactaag tttgtggcag cagggcaaga tcgccccgga
    28981 cagctgggtg atcgacgtgg atcaggtact ggaaaacggt aagcgactga ttgagacggc
    29041 gcggctttac ggcattgaac tgtatctgat gaccaagcag tttggccgta acccatggct
    29101 ggcggaaaaa ttgctggcat taggttacag cggcattgtg gcggtggatt acaaagaggc
    29161 gcgagtcatg cgccgcgctg gtttgtcggt ggcgcatcag gggcatctgg tacaaatccc
    29221 ttgtcatcag gttgctgacg ccgttgaaca gggcaccgac gtcatcaccg tgtttactct
    29281 cgacaaagcg cgggaagttt ctgcggcagc ggtgaaggcc ggacgtgtgc agtttgtgct
    29341 gctcaaagtt tatagcgacg atgattttct ttatccgggg caggagagcg gttttgtaca
    29401 gcattcgctg cacgaggtgg ttgctgaaat taagaaactg ccgggtctgc atttagccgg
    29461 acttacccat ttcccttgcc tgctttggga tgaggctgcc ggaaaagttt tgccgacacc
    29521 gaatcttcac acgctgatac aggcacggga tcaactggcg aaatctggta ttgcacttga
    29581 gcaactgaac gcgccttcag cgaccagctg cacttcgctg ccattactgg cgcaatacgg
    29641 tgtgactcat gccgaacccg gtcatgcgct gacgggcact attccggcaa accagcaggg
    29701 cgatcagtct gaacgtatcg cgatgctctg gttgagtgaa atctcccatc atttccgtgg
    29761 cgacagctac tgctacggcg gcggttacta ccgtcgtggt catgcgcaac atgcgttggt
    29821 gtttacgcca gaaaatcaaa agattactga aaccaatctc aaaactgtgg atgacagcag
    29881 tatcgactac accctgtcgc tggcaggcga gtttccggta agcagtgcag tggtgctctg
    29941 tttccgcacg cagatttttg tcacccgtag cgatgtggtg ctggtgtccg gtattcaccg
    30001 tggcgaaccg aaaatcgttg gtcgttatga cagtcttgga aactctctgg gggcgtaatg
    30061 gcgcgatttg tggtgttagt gattgatagc tttggcgtag gggcaatgaa agatgtcacg
    30121 ctggtgcgtc cgcaagatgc gggagcgaat acatgtggtc acatcctgag ccagttgccg
    30181 catttgcagc taccaacgct ggagaagctg gggctaatca acgcattggg ttatgcgcca
    30241 ggcgatatgc agccgtcaga ttccgcaacc tggggcgtgg cagagctgca acatgaaggt
    30301 ggcgatacct ttatggggca tcaggaaatt ttaggcacgc gcccgttacc gccgctgcgg
    30361 atgccttttt gcgatgtgat tgaccgtgtt gagcaggcat tagtatccgc cggttggcag
    30421 gtggagcgcc gtggcgatga actgcaattt ctgtgggtca atcaggcggt tgcgattggc
    30481 gataatctcg aggcggattt aggccaagtc tataacatta ccgccaatct ctctgtgatc
    30541 tcttttgacg acgcaatcaa aattggtcgt atcgtgcgtg agcaggtaca ggtcggtcgg
    30601 gtcattacat ttggtggcct gttaaccgac agtcaacgca ttctcgatgc cgcagaaagc
    30661 aaagaagggc gctttattgg tatcaatgcg ccgcgttctg gcgcttatga caacggcttc
    30721 caggtcgtgc atatgggcta cggtgtcgat aaaaaagtgc aggtgccgca aaaactgtat
    30781 gaggcgggcg tgccaaccgt gctggtgggt aaggtggcag atatcgtcag caatccttat
    30841 ggcgtgagct ggcaaaacct ggtggatagc cagcggatta tggatatcac cctcgacgaa
    30901 tttaacaccc atccgacggc gtttatttgc accaatatcc aggaaaccga cctcgctggt
    30961 catgcagaag acgtcgcacg ttatgccgaa cgtttgcagg tcgttgaccg taaccttgcc
    31021 cggcttgttg atgcgatgca gccagatgat tgcctggtcg tgatggcgga tcacggcaac
    31081 gatccgacca ttggtcacag ccaccatacc cgcgaagtgg tgccgctgct ggtttatcag
    31141 caaggcctgg ctgctacgca gctcggtgtg cgcaccacgc tttctgatgt gggagctacc
    31201 gtgtgtgaat ttttccgtgc gccaccgcca caaaatggtc gctcttttct ttcctccctc
    31261 cggtttgcag gagacaccct atgagttttg atccgacggg ttacaccctg gcccatgagc
    31321 atctgcatat tgatctctcc ggctttaaaa acaacgtgga ctgccgcctt gatcagtatg
    31381 cgttcatttg ccaggagatg aacgacctga tgacccgggg tgtacgtaat gtgattgaga
    31441 tgaccaaccg ttacatgggg cgcaatgcgc aatttatgct cggtgtaatg cgcgaaaccg
    31501 ggatcaacgt ggtggcctgt actggttatt accaggatgc gtttttcccg gaacatgtgg
    31561 tgacccgcag cgtgcaggaa ctggcgcagg agatggtcga tgaaattgaa cagggtatcg
    31621 atggcacgga gctgaaagcc gggctcatcg cggagatcgg ctccagcgaa ggaaagatta
    31681 cgccgctgga agagaaggta tttattgccg ctgcgctggc gcataaccag accggacgcc
    31741 cgatctccac gcatacgtcg ttcagcacca tggggctgga acaactggct ctgttgcaag
    31801 cccacggagt tgatctttcg cgcgtcaccg ttggtcactg cgatctgaaa gacaacctcg
    31861 acaacatttt gaagatgatc gatctcggcg cgtacgtgca gttcgacacc attggtaaga
    31921 acagttacta cccggacgaa aagcgcattg cgatgctcca cgcgctacgt gaccgtgggt
    31981 tgctgaaccg cgtcatgctg tcgatggata ttacgcgccg ctcccattta aaagccaatg
    32041 gtggttatgg ctatgactat ttattgacca cctttattcc gcaattgcgc cagtcaggat
    32101 tcagtcaggc cgatgtggat gtgatgttac gtgaaactcc ctctcaattt ttccaataag
    32161 gacagactca tgaaaaagat tggcgttgca ggcttacagc gtgagcagat taaaaaaacc
    32221 attgaagcga cggctcctgg cagttttgaa gttttcattc acaacgacat ggaagcggca
    32281 atgaaagtga aatccgggca actggattac tacatcggtg cgtgtaatac cggtgcgggc
    32341 gcggcattgt cgattgccat cgcggtgatt ggctataaca aaagttgcac cattgccaaa
    32401 ccaggcatta aagcgaaaga cgagcatatc gccaaaatga tcgctgaagg aaaagtggcg
    32461 tttggccttt ccgttgagca cgtcgaacac gcgattccga tgctgattaa ccatctgaaa
    32521 taaaaggcac gactatggat ctgtatattc agattatcgt ggtggcgtgc ctgacgggta
    32581 tgacatcgct tctggcgcat cgctcggcgg ctgtttttca tgacggcatc cgcccgatcc
    32641 tgccgcaact gattgaaggc tatatgaacc gtcgcgaggc ggggagtatc gcttttggtc
    32701 tgagcattgg ttttgtggcc tcggtgggga tctcttttac cctgaaaacc gggctgctca
    32761 acgcatggtt actctttctt cctaccgata tcctcggcgt actggcgata aacagcctga
    32821 tggcgtttgg tcttggcgct atctggggcg tgttgatcct tacttgcctg ttgccagtaa
    32881 accagctgct gaccgcgctg ccggtggatg tattaggtag cctcggggaa ttaagctcgc
    32941 cggtagtttc tgcttttgca ctgttcccgc tggtggcgat tttctaccag tttggctgga
    33001 agcaaagtct ggtcgccgcc gtggttgttc tgatgacccg tgtggtagtc gtgcgctatt
    33061 tcccacatct taaccctgaa tccatcgaaa tctttattgg catggtgatg ctgctgggga
    33121 tcgcgataac tcacgacctg cgtcatcgtg atgaaaatga tattgatgcc agcgggcttt
    33181 cggtgtttga agaacgcacg tcgcggatta tcaaaaactt accctatatc gccatcgtgg
    33241 gagcattgat tgccgccgtt gccagcatga agattttcgc cggcagtgaa gtgtcgatct
    33301 tcactctgga gaaagcgtac tccgcaggcg taacgccgga acaatcgcaa acgctgatca
    33361 accaggcggc actggcagaa tttatgcgcg ggctgggttt tgtaccgttg attgccacca
    33421 ccgccttagc aacgggtgtg tatgcagttg cgggctttac ctttgtttat gcggtgggct
    33481 atctctcgcc gaatccgatg gttgcagcgg tattaggcgc agtggttatt tcggcggaag
    33541 tcttgctgct tcgttctatc ggcaaatggc tgggacgcta cccgtcggtg cgtaatgcgt
    33601 cggataacat ccgtaacgcc atgaatatgc tgatggaagt ggcgctgctg gtcggttcga
    33661 ttttcgcagc aattaagatg gcgggttata ccggattctc tatcgcggtt gccatttact
    33721 tcctcaacga atccctgggc cgtccggtac agaaaatggc ggcaccggtc gtggcagtaa
    33781 tgatcaccgg tattctgctg aatgttcttt actggcttgg cctgttcgtt ccggcttaag
    33841 gaaggcacct atgaagacgt ttcctctgca aagcctgacg cttattgagg cgcagcaaaa
    33901 gcagtttgcg ctggtggaca cgatttgccg tcactttccc ggcgcggagt ttctaaccag
    33961 cggtgatttg ggcttaacgc cggggctgaa tcaaccgcgt attacccaac gggtggagca
    34021 ggtgctggct gatgcatttc acgcacaggc tgcggcgctg gtgcagggcg cggggactgg
    34081 cgcgattcgc gccgggctgg cagctttgct caaaccgggg cagcgtcttc tggtgcatga
    34141 cgcgcctgtt tacccgacga cacgggttat tattgagcag atggggctga cgcttattac
    34201 tgttgatttc aatgacctgt cggcactgaa gcaggtcgtc gacgagcaac aaccggatgc
    34261 ggcgctggtg cagcatacgc gccagcagcc gcaggacagc tacgtgctgg cagatgtgct
    34321 ggcaacgttg cgcgcggcag gtgttccagc gttaaccgat gacaactatg cggtgatgaa
    34381 ggtggcgcga atcggctgtg aatgcggcgc gaatgtctcg acattttcct gcttcaagct
    34441 atttgggcca gagggtgttg gtgcagtggt cggcgatgct gatgttatca accgtattcg
    34501 cgccacgctt tactccggcg gtagccagat ccagggcgca caggcgctgg aagtattgcg
    34561 ttgtctggtg tttgcgccag tgatgcacgc ggtgcaggca ggggtatctg aacggttgct
    34621 ggctttgctt aacggtggtg aggtgccgga agtgaaaagc gcggtgattg ctaatgcgca
    34681 gtcgaaggtg ttgattgtcg agtttcatca gccgattgcc gccagagtgc tggaagaggc
    34741 gcaaaagcgc ggtgccttgc cttacccggt gggtgcagag tcgaaatatg aaatcccgcc
    34801 gctcttttat cgcctttccg gaacgtttcg ccaggcgaat ccacaatcag aacattgtgc
    34861 gattcgcatt aacccgaatc gcagcggtga agagacggtg ctgcggattt tgcgtgagag
    34921 tattgccagt atttaatgct ggatagcacc gtcaagctaa attccgtact gaacggtccc
    34981 ctcgcccctt tggggagagg gttagggtga ggggaacgta cgggatgtaa aattcaacgc
    35041 gccagcatcg ccggatgcga tgctggcgca tcttatccgg cctacggtta atgtctttta
    35101 ttatcaatag ttaaggtgat gcgattggcg cggcagaaga gttcggagac gtgcaccggt
    35161 ttgtcattct gatcaaaggc gattttgctg atgcgaaaca acggttcgcc cagttcgcat
    35221 ttcagccatt ttgcctgcgg gcgggtggcg gcaaagatat cgatggtctt tttgtcgctg
    35281 accactcgcg tgtcaaaacg ctcctgaaat aactgatagg tggagcttcc ttcgacgtaa
    35341 atctcatcaa agtcaggata acgcgacagc gggatccatg aactatcaat aaacagcggc
    35401 tctttatcga gatacatcac ccggcagaga tggaacactt cgctgtttcc ggggatgttc
    35461 agctttttgc aaaacggcgc ggcgctgacc cgttcctgtt cgatcacttt ctctttcgtc
    35521 gccttgcctt gtgagacgcc aaaatcggta aaaccactga cagtaagcag ggcgttttca
    35581 actttctggc tttgtacaaa ggtgcctttt ccctgccagc ggatcagtac gccgtccgcc
    35641 actaagtcgc tgatggcttt gcgaatggta atgcggctga cgttatattg tgtacaaagc
    35701 tcgttttcgg tagggatctg ttgcccggcc tggtaaaccc cctgcgcgat atcatccagc
    35761 agtcgctggc ggacggtagc gtagaggagt tgatgagagt agcggtccgt agctgacata
    35821 atcgaccctg aaataaagaa tgaattactc ggattatagg gtcgttttcc ggcaagtaac
    35881 agcacgttgg cgtgaagatg ctcacgccaa cgttatacct accaggcacc gtggtactga
    35941 atggttttcg ccgcgcacgc cgttccctgc gccatcgcct gcggtaatgt catccccgca
    36001 gaccagccgc aaaggaatcc ggcaatgaac gaatctccgg cacccatggt gtcgataacc
    36061 gtcaccggtt caggagcctg acgccagaac tgcgcgccat cccaggcaat gctgccgttt
    36121 tcacccagcg tgacaatcac tgttcctgcg ccacgggcaa caatcgcttt catcttcaga
    36181 cgcagcgttt cgtcttcttg cggtgcggag gcaaaggcaa aatcgagatg cggcaccagt
    36241 gtctgccaga gcgggctgtc ccacttgtcg gagaagtcga aagcggtaag tttgcccgca
    36301 gcgtgcagct gtgggaatgc gtcttccgca tgtccccaga ttgccgcgtg cacaatgtca
    36361 tactgcgcca gccaggcgta atcctcttca ctcagggcaa agtcggccat cacgccttcg
    36421 gtgtagtcgc caaaaacgcg atcattgtcg tgcagttcca cctgagtttg tgcggtaacg
    36481 ccgtgtttcg tatggacatg gctgatatcg acgcccatgc gggcgagatc ctgcttcagc
    36541 tttgtgccgt agtcatcgtc acccacccag gtaatgcatc ccggctgtat gccgtagcga
    36601 gtgcagtaca ccgccacatt gaccgcatta ccgccagaaa acgctttatt cagttgcggg
    36661 tagatatcga cgcagttatc gccgattgtc gccagggttt tcatctctca tcctccggca
    36721 gcagcgcgcg aaagcgttcc agcgcctggc gggcatagag tctgggctcg ttcatataca
    36781 tcgtcaccag ctccaccgta cagtaaccct catagccccg ctcaataata tcgcgcatca
    36841 gttcccgcag cggcattttg ccttctccag gaatgtaatg cgtgtcgctg gccccgtcgc
    36901 tgtcgacaat atgcagatga cgtaatttat cgcccagttt gtcgaaataa ctcatcaccg
    36961 gttccgcctg gacatacggc gcgcaaatgt cgaccatgct gaacaggcgc ggcgaaggca
    37021 ccagcgccag cgcatgaagc acatcattag cattacacac gatgttcgat tcatacggcg
    37081 ttaacggttc gaggattaga tccatgccga tgttttccgc gtactcatac agttcgctta
    37141 ggttctctgc cagccgtccc cagataacat taggtggcgt gagatagccc gcgtgggccg
    37201 cggaaatcag cgtataaccc gcgttcatct cttttgccat atccatcgcc agcttgatca
    37261 tgtcgaggct ttcgcgacgc atatgttcat cgcccagcat catgttatac ggatagccat
    37321 tggtttctgg cgtatagccg ataatcggca tctgatacgt ctgcgccagc gccttgattt
    37381 gtttgatgcc gcccgctttt aagtccggcg cgaacgcgtg cgggcgaccg ccccaaattt
    37441 cgatgccgtc gtaacccagc tcgcttgcat cacgaaatgc gtgttcaata ggcagccgct
    37501 ggtggccgca ggtaaacata cctgttttca tcgggtaact ccttgcgtaa atccggcccg
    37561 ttgccgggcc gggcgaggga ttaatattcc accagaccac cgtaatagcg gcgttcatcc
    37621 gggttgtgat ctttgtaaat agacaggtag tagcagagcc actccattgg cacgaacatc
    37681 aggaacggtg ccagccacgg gtgcagccct tgcgaaattt cggcgtaatc gatgacgatc
    37741 acgttgtcag tacgctgttt aacaaagtta atggcgcgtt cggtggtgtg gcgactttca
    37801 tcattgccga gcaggaacag gaacggaacg cccggttcga caatctccag cgggccatgg
    37861 cggaactctc cgctctcaat cacgcagccg tgcgtccagg taaattccat cagcgttaca
    37921 atgccttctt tgtaacccag cggacgcagc ggacccgcag caacggtata aatcatcggc
    37981 cactggctgg ccagttcacc aagctggcgg cctttttctt cccaggtgcg taccagatga
    38041 ccgagcgcat tcggcaactg cttgagatcg tttttgatct tgccgatttc cgcgttcggc
    38101 gcgaggcggg tgatcatctc cagcaccacg ctgtagcaga gcagcaggtg aatttcccag
    38161 atacagtcgg cctgataatc aatgctaaat tccgccgccg aggtaatcgg gctgtccgcg
    38221 cgtttggtga acgccgcagt gagtgcgccg caggcccggc ccagctccag cgctttgatt
    38281 acctcttccg ttttaccgta gtcagaaacg ccaatcaccg cgcaacgatc gtcgaggcga
    38341 tacggggtgt tatcgcagaa ctcccagccg gaaatggcgt agacctgaag atcggaaaag
    38401 cgatccgcca gatgtttcgc cgcttgcgcc gcgttgagtg gcgagccgca ggcaacgaaa
    38461 taaatacgat caatgtcgcg cttcaccatc tcttccacga tggcgtgcac cagcggaacg
    38521 tcatggctga gaactttttc cacttcctga accatatttt cggtgaccag aaagtccacg
    38581 gtgcttttat caatatccaa cattttattt tctccagata acattacgac aaagcgttga
    38641 gctggcggct acgcttcgcc cagaaggcgt aagcaggcag accagtagca ataacgatga
    38701 cggcgcagat aaggccggga atcggtgccc agacaaaggt tgaggcgacc agaatgaggc
    38761 ttgacgcaat ggcgagggtg gtcatcagcc cgaaagcagg agtacgccac agcggtttgt
    38821 aatcgtcgcg tttacgacac cagatgatgg agccgaaggt gagggtattt ttgaaacaca
    38881 tcaccagggt gaaataaccc agcaggctgg tgagatcgga aacgaagatg aagaagagcc
    38941 ccagcgcccc ttgcaggatg atggagacat ccggcgtgtt gtatttcgga tgcacatggc
    39001 cgaagcattt aaagaacagg ttgtctttcg ccatcgcgta ttccagccgc ggctggtaca
    39061 tcacgcagct ggaaagcgaa ccaagaatga cgatcatcgc cgtgatggca acaaagatcc
    39121 cagcggtgct gccgagtgcg gggatccagg tcagggcgtc ggaaatcggc gtttcagaat
    39181 tggcgagttt gtcgaagggc atcaggtcgg aaatcaccag cgccagcagg gtgtagagca
    39241 ccagaaccag cagacaggaa ccaatcagcg ctcgtggcat ggtttttccg gggtttttaa
    39301 tttcgccggt catataacag atagaggcca tgccggtata cgaccaactg gtggcagaga
    39361 tccccgccag cagcgccata aagctgcccg ttgcgccaat cgcagtggtg gtaggggcgg
    39421 caaaattctc cgctttaaac cagaagatcc caaggccaat gacgatagtg aacgggataa
    39481 ttttggcgat ggtaattagc gtctgaaacg ctgcgccgcc ttcaacggag cgcaggtgta
    39541 gcaacataaa ggcgataatt aatccggcgg cgataaattt accgggcaac ggatcgatag
    39601 gcgttaaaaa gccaagattg ctgacaatcg ccagcgccat aatcgacaat gacggcgcat
    39661 cgttggccca gaagctggcc cagccggaga ggaaagccag cggtcggctt ccggcatttt
    39721 tcagataaac ataatctgcg ccattttccg gataagcggt ggatagttcc gcatagacgc
    39781 acatttgcgg gatcacaatt aacccgccaa tgacaaacgt gagcaccgta agccacggcg
    39841 tgcccgctgc ttttgccact tcacccacag atacaaaaat accggagccg acggttgtcc
    39901 cgacggcgat tgcaagaacg gcccaaaatc cgagcttgcg ttggagttcc tggcttccca
    39961 tagcgatacc tttttcttgt ccaacacgtt gtaggggaga gtttgcagtc atttaaaagg
    40021 taacatgaca atgcatgatg aatataataa catatgatgt tatgtaatgc ggaggaagat
    40081 cacaaaattt cgcacaggat cgcgctgtgg ctaatgaatg tagttatcca attgaaatta
    40141 aagtgaaaat atttttacgg gtggggagca agaaggatat agaaacaaat acgccctcgg
    40201 aaaatccaga gggcgtcggg caattaaacc ggtgttagcc gatttctgtc agagacttac
    40261 tgtgcagtag gaccgcaacc gccaatgatt ttagaaatag aaattgccgg gtgcagcagg
    40321 tagtcgtaag agcagttctt atcacggttt tcaatatgac cagtacatgc agttaacgta
    40381 gccagtactg cacctaccag tgcaacttta ataaatttgt tcatt
//
LOCUS       DADMJB010000013        40423 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.013, whole genome shotgun sequence.
ACCESSION   DADMJB010000013 DADMJB010000000
VERSION     DADMJB010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 40423)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40423)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40423
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.013"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..110)
                     /locus_tag="JN078_000659"
     CDS             complement(<1..110)
                     /locus_tag="JN078_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001371617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein Rhs"
                     /protein_id="HAY9039965.1"
                     /translation="MSGKPAARQGDMTQYGGSIVQGSAGVRIGAPTGVACS"
     gene            complement(350..556)
                     /locus_tag="JN078_000660"
     CDS             complement(350..556)
                     /locus_tag="JN078_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbfA family protein"
                     /protein_id="HAY9039966.1"
                     /translation="MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLH
                     RVWSKTSDKPVWMEQAEKATGDFY"
     gene            869..958
                     /gene="kdpF"
                     /locus_tag="JN078_000661"
     CDS             869..958
                     /gene="kdpF"
                     /locus_tag="JN078_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
                     /protein_id="HAY9039967.1"
                     /translation="MSAGVIAGVLLVFLLLGYLVYALINAEAF"
     gene            958..2631
                     /gene="kdpA"
                     /locus_tag="JN078_000662"
     CDS             958..2631
                     /gene="kdpA"
                     /locus_tag="JN078_000662"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706533.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HAY9039968.1"
                     /translation="MAAQGFLLIATFLLVLMVLARPLGSGLARLINDIPLPGTAGVER
                     ILFRLPGVSDHEMNWKQYLCAILGLNMLGLAVLFFMLLGQHYLPLNPQQLPGLSWDLA
                     LNTAVSFVTNTNWQSYSGETTLSYFSQMAGLTVQNFLSAASGIAVIFAFIRAFTRQSM
                     STLGNAWVDLLRITLWVLVPVALLIALFFIQQGALQNFLPYQAVNTVEGAQQLLPMGP
                     VASQEAIKMLGTNGGGFFNANSSHPFENPTALTNFVQMLAIFLIPTALCFAFGEVTGD
                     RRQGRMLLWAMSVIFVICVGVVMWAEVQGNPHLLALGADSSINMEGKESRFGVLVSSL
                     FAVVTTAASCGAVIAMHDSFTALGGMVPMWLMQIGEVVFGGVGSGLYGMMLFVLLAVF
                     IAGLMIGRTPEYLGKKIDVREMKLTALAILVTPTLVLMGAALAMMTDAGRSAMLNPGP
                     HGFSEVLYAVSSAANNNGSAFAGLSANSPFWNCLLAFCMFVGRFGVIIPVMAIAGSLV
                     SKKSQPASSGTLPTHGPLFVGLLIGTVLLVGALTFIPALALGPVAEYLS"
     gene            2654..4702
                     /gene="kdpB"
                     /locus_tag="JN078_000663"
     CDS             2654..4702
                     /gene="kdpB"
                     /locus_tag="JN078_000663"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HAY9039969.1"
                     /translation="MSRKQLALFEPTLVVQALKEAVKKLNPQAQWRNPVMFIVWIGSL
                     LTTCISIAMASGAMPGNALFSAAISGWLWVTVLFANFAEALAEGRSKAQANSLKGVKK
                     TAFARKLREPKYGAAADKVPADQLRKGDIVLVEAGDIIPCDGEVIEGGASVDESAITG
                     ESAPVIRESGGDFASVTGGTRILSDWLVIECSVNPGETFLDRMIAMVEGAQRRKTPNE
                     IALTILLIALTIVFLLATATLWPFSAWGGNAVSVTVLVALLVCLIPTTIGGLLSAIGV
                     AGMSRMLGANVIATSGRAVEAAGDVDVLLLDKTGTITLGNRQASEFIPAQGVDEKTLA
                     DAAQLASLADETPEGRSIVILAKQRFNLRERDVQSLHATFVPFTAQSRMSGINIDNRM
                     IRKGSVDAIRRHVEANGGHFPADVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIVK
                     GGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQA
                     EGRLVAMTGDGTNDAPALAQADIAVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVHIGK
                     QMLMTRGSLTTFSITNDVAKYFAIIPAAFAATYPQLNALNIMRLHSPDSAILSAVIFN
                     ALIIVFLIPLALKGVSYKPLTASAMLRRNLWIYGLGGLLVPFIGIKVIDLLLTVCGLV
                     "
     gene            4711..5254
                     /gene="kdpC"
                     /locus_tag="JN078_000664"
                     /pseudo
     CDS             4711..5254
                     /gene="kdpC"
                     /locus_tag="JN078_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308751.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit C"
     gene            5247..7931
                     /gene="kdbD"
                     /locus_tag="JN078_000665"
     CDS             5247..7931
                     /gene="kdbD"
                     /locus_tag="JN078_000665"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     KdbD"
                     /protein_id="HAY9039970.1"
                     /translation="MNNEPLRPDPDRLLEQTAAPHRGKLKVFFGACAGVGKTWAMLAE
                     AQRLRAQGLDIVVGVVETHGRKDTDAMLEGLAVLPPKRLAYRGRHICEFDLDAALARR
                     PALILMDELAHSNALGSRHPKRWQDIEELLEAGIDVFTTVNVQHLESLNDVVSGVTGI
                     QVRETVPDPFFDAADDVVLVDLPPDDLRQRLKEGKVYIAGQAERAIEHFFRKGNLIAL
                     RELALRRTADRVDEQMRAWRGHPGEEKVWHTRDAILLCIGHNTGSEKLVRAAARLASR
                     LGSVWHAVYVETPALHRLPEKKRRAILSALRLAQELGAETATLSDPAEEKAVVRYARE
                     HNLGKIILGRPASRRWWRRETFADRLARIAPDLDQVLVALDEPPARTINNAPDSRSFK
                     DKWRVQIQGCVVAAALCAVITLIAMQWLMAFDAANLVMLYLLGVVVVALFYGRWPSVV
                     ATVINVVSFDLFFIAPRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVRYQARVARYR
                     EQRTRHLYEMSKALAVGRSPQDIAATIEQFIASTFHARSQVLLPDDNGKLQPLTHPQG
                     MTPWDDTIAQWSFDKGLPAGAGTDTLPGVPYQILPLKSGEKTYGLVVVEPGNLRQLMI
                     PEQQRLLETFTLLVANALERLTLTASEEQARMASEREQIRNALLAALSHDLRTPLTVL
                     FGQAEILTLDLASEGSPHARQASEIRQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLT
                     LEEVVGSALQMLEPGLSSPINLSLPEPLTLIHVDGPLFERVLINLLENAVKYAGAQAE
                     IGIDAHVEGENLQLDVWDNGPGLPPGQEQTIFDKFARGNKESAVPGVGLGLAICRAIV
                     DVHGGTITAFNRPEGGACFRVTLPQQTAPELEEFHEDM"
     gene            7928..8605
                     /gene="kdpE"
                     /locus_tag="JN078_000666"
     CDS             7928..8605
                     /gene="kdpE"
                     /locus_tag="JN078_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator KdpE"
                     /protein_id="HAY9039971.1"
                     /translation="MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGLLEAATR
                     KPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKP
                     FGIGELQARLRVALRRHSATAAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFHLL
                     AVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETG
                     IGYRFML"
     gene            complement(8821..9078)
                     /locus_tag="JN078_000667"
     CDS             complement(8821..9078)
                     /locus_tag="JN078_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9039972.1"
                     /translation="MQKPLPVRWLIIQGLTENEHCGIQAYACNTESQEDLYAEVPLVG
                     RLTGIEEVKVEAIAMSKLHNMSCPPYMGHSAAVIFHLIYLS"
     gene            9201..11399
                     /gene="speF"
                     /locus_tag="JN078_000668"
     CDS             9201..11399
                     /gene="speF"
                     /locus_tag="JN078_000668"
                     /EC_number="4.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine decarboxylase SpeF"
                     /protein_id="HAY9039973.1"
                     /translation="MSKLKIAVSDSCPDCFTTQRECIYINESRNIDVAAIVLSLNDVT
                     CGKLDEIDATGYGIPVFIATENQERVPAEYLPCISGVFENCESRREFYGRQLETAASH
                     YETQLRPPFFRALVDYVNQGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGEALFRSDLC
                     NADVAMGDLLIHEGAPCIAQQHAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVL
                     FDRNNHKSNHHGALLQAGATPVYLETARNPYGFIGGIDAHCFEESYLRELIAEVAPQR
                     TKEARPFRLAVIQLGTYDGTIYNARQVVDKISHLCDYILFDSAWVGYEQFIPMMADCS
                     PLLLDLNENDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQQRYVPHKRMNNAFMMH
                     ASTSPFYPLFAALDINAKMHEGVSGRNMWMDCVVNGINARKLILDNCQHIRPFVPELV
                     DGKPWQSYETAQIAVDLRFFQFVPGEHWHSFEGYAENQYFVDPCKLLLTTPGFDARNG
                     EYEAFGVPATILANFLRENGVVPEKCDLNSILFLLTPAEDMAKLQQLVALLVRFEKLL
                     ESDAPLAEVLPSIYKQHEERYAGYTLRQLCQEMHDLYARHNVKQPQKEMFRKEHFPRV
                     SMNPQEANYAYSRGEVELVRLPDAEGRIAAEGALPYPPGVLCVVPGEIWGGAVLRYFS
                     ALEEGINLLPGFAPELQGVYIEEHDGRKQVWCYVIKPRDAQSTLLKGEKL"
     gene            11396..12734
                     /gene="potE"
                     /locus_tag="JN078_000669"
                     /pseudo
     CDS             11396..12734
                     /gene="potE"
                     /locus_tag="JN078_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415219.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine-ornithine antiporter"
     gene            12762..12959
                     /locus_tag="JN078_000670"
                     /pseudo
     CDS             12762..12959
                     /locus_tag="JN078_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001405579.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            13083..13733
                     /locus_tag="JN078_000671"
     CDS             13083..13733
                     /locus_tag="JN078_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001208812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2625 domain-containing protein"
                     /protein_id="HAY9039974.1"
                     /translation="MREMNQLVNTEDSAWPIIQNWLKDATNHTELLPVNKNLAETALY
                     QLQVTTKSPMGALVYGSGGLLIDNGWLRIAGSGHPRLPRDPVSWTQRPEFAGVRALPI
                     ADDVAGGIFALNGGDLGEDTGCVYYFAPDTLNWESLEVGYSEFLQWALSGDLDTFYEN
                     VRWQQWREDVIKLSATEAFTFYPFLWVQSEEARTRKVISLTELWEMQYQMKETFTQ"
     gene            complement(13774..14268)
                     /locus_tag="JN078_000672"
     CDS             complement(13774..14268)
                     /locus_tag="JN078_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9039975.1"
                     /translation="MKTNRSLVVIVSLITATLLLTACAQPEQSSLAGDWLLTPKDKTR
                     RLTGSIAVNIAPSRCKTNCRGDNLPDNTRRWQLSGGNEKELTYLHNMSAQEKVGLNPG
                     WQCYTSFFMRVCQGKPGTRPIVNEDYVSESGFFGSMMHVGIIELRRCQSENCQQELKA
                     INTH"
     gene            complement(14483..16123)
                     /gene="pgm"
                     /locus_tag="JN078_000673"
     CDS             complement(14483..16123)
                     /gene="pgm"
                     /locus_tag="JN078_000673"
                     /EC_number="5.4.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-glucose phosphate-specific
                     phosphoglucomutase"
                     /protein_id="HAY9039976.1"
                     /translation="MAIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGT
                     SGHRGSAARHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVL
                     AANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPP
                     NGGPADTNVTKVVEDRANALLADGLKGVKRISLDEAMASGHVKEQDLVQPFVEGLADI
                     VDMAAIQKAGLTLGVDPLGGSGIEYWKRIGEYYNLNLTIVNDQVDQTFRFMHLDKDGA
                     IRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQ
                     HRPQWGKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEES
                     AGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAKRFGAPSYNRLQA
                     AATSAQKAALSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARP
                     SGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVLKNA"
     gene            complement(16149..16694)
                     /gene="seqA"
                     /locus_tag="JN078_000674"
     CDS             complement(16149..16694)
                     /gene="seqA"
                     /locus_tag="JN078_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation negative regulator SeqA"
                     /protein_id="HAY9039977.1"
                     /translation="MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAP
                     VTKEVRVASPAIAEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLD
                     AQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMI
                     EHIMQSMQFPAELIEKVCGTI"
     gene            16879..17643
                     /gene="ybfF"
                     /locus_tag="JN078_000675"
     CDS             16879..17643
                     /gene="ybfF"
                     /locus_tag="JN078_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HAY9039978.1"
                     /translation="MKLNIRAQTAQNQHNNSPIVLVHGLFGSLDNLGVLARDLVNDHN
                     IIQVDMRNHGLSPRDPVMNYPAMAQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALA
                     RDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQ
                     FLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPSGNSPYVSEQYRDDLL
                     AQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND"
     gene            17714..18076
                     /gene="ybfE"
                     /locus_tag="JN078_000676"
     CDS             17714..18076
                     /gene="ybfE"
                     /locus_tag="JN078_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA regulated protein"
                     /protein_id="HAY9039979.1"
                     /translation="MYYGALSIRAEAWLIVSPEVTKIMAKEQTDRTTLDLFAHERRPG
                     RPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAEAVEALNELAESRNMSRSEL
                     IEEMLMQQLAALRSQGIV"
     gene            18216..18746
                     /gene="fldA"
                     /locus_tag="JN078_000677"
     CDS             18216..18746
                     /gene="fldA"
                     /locus_tag="JN078_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HAY9039980.1"
                     /translation="MAITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDL
                     EAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDAL
                     GTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKW
                     VKQISEELHLDEILNA"
     gene            18956..19042
                     /gene="uof"
                     /locus_tag="JN078_000678"
     CDS             18956..19042
                     /gene="uof"
                     /locus_tag="JN078_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001491546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fur leader peptide"
                     /protein_id="HAY9039981.1"
                     /translation="MIRIISRANSVTSSNEVNRLVTGQIPHD"
     gene            19035..19481
                     /gene="fur"
                     /locus_tag="JN078_000679"
     CDS             19035..19481
                     /gene="fur"
                     /locus_tag="JN078_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HAY9039982.1"
                     /translation="MTDNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLI
                     DMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELTQQHHHDHLICLDCGKVIEF
                     SDDSIEARQREIAAKHGIRLTNHSLYLYGHCAEGDCREDEHAHEGK"
     gene            complement(19566..19892)
                     /locus_tag="JN078_000680"
     CDS             complement(19566..19892)
                     /locus_tag="JN078_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9039983.1"
                     /translation="MKKLILIAIMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSP
                     EKIEACQSVLNVLKKEKQHQHFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQE
                     IRSNNK"
     gene            complement(19942..21348)
                     /gene="chiP"
                     /locus_tag="JN078_000681"
     CDS             complement(19942..21348)
                     /gene="chiP"
                     /locus_tag="JN078_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitoporin"
                     /protein_id="HAY9039984.1"
                     /translation="MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGG
                     IYYWQRERDRKDVTDGDKYKTNLSHSTWNANLDFQSGYAADMFGLDIAVFTAIEMAEN
                     GDSSHPNEIAFSKSNKAYDEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLL
                     APHWSFMPGTYQGAEAGANFDYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKV
                     DYLHSLGAKYDFKNNFVLEAAFGQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRD
                     KVDDRSVNDLYDGTAWLQALTFGYRAADVVDLRLEGTWVKADGQQGYFLQRMTPAYAS
                     SNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLLGFAIGASYVYAWDAKPATWQS
                     NPDAYYDKNRTIEESAYSLDAVYTIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNI
                     FQDERDVKFMVIAPFTIF"
     gene            complement(21795..23459)
                     /gene="glnS"
                     /locus_tag="JN078_000682"
     CDS             complement(21795..23459)
                     /gene="glnS"
                     /locus_tag="JN078_000682"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HAY9039985.1"
                     /translation="MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGH
                     AKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSD
                     YFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEK
                     MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCI
                     SDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL
                     LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTRQDNTIEMASLESCIRE
                     DLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNKPEMGSRQVPFSSEIWIDRAD
                     FREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADG
                     RKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGAADDFLSVINPESLVIKQGFAEPSL
                     KDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE"
     gene            complement(23662..25608)
                     /gene="nagE"
                     /locus_tag="JN078_000683"
     CDS             complement(23662..25608)
                     /gene="nagE"
                     /locus_tag="JN078_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N-acetyl glucosamine transporter subunit
                     IIABC"
                     /protein_id="HAY9039986.1"
                     /translation="MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQA
                     GGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGYFVLTKAMVTINPEINMGVLAGI
                     ITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIH
                     AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINR
                     FYAGDGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGV
                     TEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAGAIDYALMYNLPAAS
                     QNVWMLLVMGVVFFAIYFVVFSLVIRMFNLKTPGREDKEDEIVTEEANSNTEEGLNQL
                     ATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASGVVKLNKQTIQVI
                     VGAKAESIGDAMKKVVARGPVAAASAEATPSTAAPVAKPQAVPNAVSIAELVSPITGD
                     VVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEKGAEI
                     VVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDD
                     FSGLIIKAQGHVVAGQTPLYEIKK"
     gene            25941..26741
                     /gene="nagB"
                     /locus_tag="JN078_000684"
     CDS             25941..26741
                     /gene="nagB"
                     /locus_tag="JN078_000684"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008805656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HAY9039987.1"
                     /translation="MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGT
                     PMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAE
                     NINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIK
                     TLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEG
                     CVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTLRYFNELEAENIKGL"
     gene            26801..27949
                     /gene="nagA"
                     /locus_tag="JN078_000685"
     CDS             26801..27949
                     /gene="nagA"
                     /locus_tag="JN078_000685"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HAY9039988.1"
                     /translation="MYALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQR
                     SLNGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITT
                     SDELMKQGVRVMREYLARHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAALVDFLC
                     ENADVITKVTLAPEMVPAEVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLY
                     NAMPYITGREPGLAGAILDEADIYCGIIADGLHVDYANIRNAKRLKGDKLCLVTDATA
                     PAGANIEQFIFAGKTIYYRNGLCVDENGTLSGSSLTMIEGVRNLVEHCGIALDEVLRM
                     ATLYPARAIGVEKRLGTLAAGKVANLTAFTPDFKITKTIVNGNEVVTQ"
     gene            27958..29178
                     /gene="nagC"
                     /locus_tag="JN078_000686"
                     /gene_synonym="nagR"
     CDS             27958..29178
                     /gene="nagC"
                     /locus_tag="JN078_000686"
                     /gene_synonym="nagR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator NagC"
                     /protein_id="HAY9039989.1"
                     /translation="MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQL
                     APASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITL
                     FDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDP
                     DSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILV
                     RVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQ
                     RVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFN
                     PQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFALVKR
                     AMLNGILLQHLLEN"
     gene            29226..29978
                     /gene="nagD"
                     /locus_tag="JN078_000687"
     CDS             29226..29978
                     /gene="nagD"
                     /locus_tag="JN078_000687"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide monophosphatase NagD"
                     /protein_id="HAY9039990.1"
                     /translation="MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNY
                     PSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKA
                     GFTITDVNPDFVIVGETSSYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALC
                     AGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETI
                     LVLSGVSSLDDIDSMPFRPSWIYPSVAEIDVI"
     gene            30375..32039
                     /gene="asnB"
                     /locus_tag="JN078_000688"
     CDS             30375..32039
                     /gene="asnB"
                     /locus_tag="JN078_000688"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001724523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase B"
                     /protein_id="HAY9039991.1"
                     /translation="MCSIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNA
                     ILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEV
                     ILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVAS
                     EMKSLVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDFDAVKDNVTDKNELRQALED
                     SVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP
                     GSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMS
                     RKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKA
                     MSAWGVEARVPFLDKKFLDVAMRINPQDKMCGNGKMEKHILRECFESYLPASVAWRQK
                     EQFSDGVGYSWIDTLKEVAAQQVSNQQLETARFRFPYNTPTSKEAYLYREIFEELFPL
                     PSAAECVPGGPSVACSSAKAIEWDEAFKKMDDPSGRAVGVHQSAYK"
     gene            32420..32496
                     /locus_tag="JN078_000689"
     tRNA            32420..32496
                     /locus_tag="JN078_000689"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32454..32456,aa:Met,seq:cat)
     gene            32505..32589
                     /locus_tag="JN078_000690"
     tRNA            32505..32589
                     /locus_tag="JN078_000690"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32539..32541,aa:Leu,seq:tag)
     gene            32613..32687
                     /locus_tag="JN078_000691"
     tRNA            32613..32687
                     /locus_tag="JN078_000691"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32645..32647,aa:Gln,seq:ttg)
     gene            32722..32796
                     /locus_tag="JN078_000692"
     tRNA            32722..32796
                     /locus_tag="JN078_000692"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32754..32756,aa:Gln,seq:ttg)
     gene            32812..32888
                     /locus_tag="JN078_000693"
     tRNA            32812..32888
                     /locus_tag="JN078_000693"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32846..32848,aa:Met,seq:cat)
     gene            32937..33011
                     /locus_tag="JN078_000694"
     tRNA            32937..33011
                     /locus_tag="JN078_000694"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32969..32971,aa:Gln,seq:ctg)
     gene            33049..33123
                     /locus_tag="JN078_000695"
     tRNA            33049..33123
                     /locus_tag="JN078_000695"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:33081..33083,aa:Gln,seq:ctg)
     gene            complement(33277..34452)
                     /gene="ubiF"
                     /locus_tag="JN078_000696"
     CDS             complement(33277..34452)
                     /gene="ubiF"
                     /locus_tag="JN078_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706550.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
                     hydroxylase"
                     /protein_id="HAY9039992.1"
                     /translation="MTNQPTEIAIVGGGMVGGALALGLAQHGFSVTVIEHAEPAPFVA
                     DSQPDVRISAISAASVSLLKGLGVWDAVQAMRCHPYRRLETWEWETAHVVFDAAELKL
                     PLLGYMVENTVLQQALWQALEAHPKVTLRVPGSLIALHRDNDLQELELKGGETIRAKL
                     VIGADGANSQVRQMAGIGVHAWQYAQSCMLISVQCENDPGDSTWQQFTPDGPRAFLPL
                     FDNWASLVWYDSPARIRQLQNMNMAQLQAEIAKHFPSRLGYVTPLAAGAFPLTRRHAL
                     QYVQPGLALVGDAAHTIHPLAGQGVNLGYRDVDALIDVLVNARSYGEAWASYPVLKRY
                     QMRRMVDNFIMQSGMDLFYAGFSNNLPPLRFVRNLGLMAAERAGVLKRQALKYALGL"
     gene            34598..36022
                     /gene="miaB"
                     /locus_tag="JN078_000697"
     CDS             34598..36022
                     /gene="miaB"
                     /locus_tag="JN078_000697"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HAY9039993.1"
                     /translation="MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVL
                     LLNTCSIREKAQEKVFHQLGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDII
                     FGPQTLHRLPEMINSVRGDRSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKY
                     CTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGSTGSF
                     ADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNL
                     MGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSY
                     SFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGT
                     SRKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPNSLRGKVVRTEDEMGLRV
                     AETPESVIARTRKENDLGVGYYQP"
     gene            36136..37215
                     /locus_tag="JN078_000698"
     CDS             36136..37215
                     /locus_tag="JN078_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706552.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HAY9039994.1"
                     /translation="MFSFRRHTDKRNGLNIDTREITLEPADNARLLSLCGPFDDNIKQ
                     LERRLGIEINRRDNHFKLTGRPICVTAAADILRSLYVDTAPMRGQIQDIEPEQIHLTI
                     KEARVLEQSAESVPEYGKAVNIKTKRGVIKPRTPNQAQYIANILDHDITFGVGPAGTG
                     KTYLAVAAAVDALERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFE
                     MLGFEKVEKLIERNVIEVAPLAYMRGRTLNDAFIILDESQNTTIEQMKMFLTRIGFNS
                     KAVITGDVTQIDLPRNTKSGLRHAIEVLADVEEISFNFFHSEDVVRHPVVARIVNAYE
                     AWEEAEQKRKAALAAERKREEQEQK"
     gene            37212..37679
                     /gene="ybeY"
                     /locus_tag="JN078_000699"
     CDS             37212..37679
                     /gene="ybeY"
                     /locus_tag="JN078_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014169133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HAY9039995.1"
                     /translation="MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQFQEESEVTIR
                     VVDTAESHSLNLTYRGKDKPTNVLSFPFEVPPGMEMSLLGDLVICRQVVEKEAQEQGK
                     PLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAEKE"
     gene            37769..38647
                     /gene="corC"
                     /locus_tag="JN078_000700"
     CDS             37769..38647
                     /gene="corC"
                     /locus_tag="JN078_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308723.1"
                     /note="CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter
                     (CNNM) family, and was characterized as belonging to a set
                     of three proteins, at least one of which must be present
                     for CorA to function; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family magnesium/cobalt transport protein
                     CorC"
                     /protein_id="HAY9039996.1"
                     /translation="MSDDNSHSSDTISNKKGFFSLLLSQLFHGEPKNRDELLALIRDS
                     GQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSR
                     FPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFRS
                     QRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALA
                     SIEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGETIDIDGYQFKVAMADSRRIIQ
                     VHVKIPDDSPQPKLDE"
     gene            38672..40210
                     /gene="lnt"
                     /locus_tag="JN078_000701"
     CDS             38672..40210
                     /gene="lnt"
                     /locus_tag="JN078_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HAY9039997.1"
                     /translation="MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGL
                     QALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLS
                     LYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPL
                     KGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQP
                     EKTIQVSMVQGDIPQSLKWDGDQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEIN
                     QQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYN
                     KNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSVNGIELTAAICYEIIL
                     GEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITA
                     VIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSLR
                     ARKR"
BASE COUNT         9625 a        10348 c        10514 g         9936 t
ORIGIN      
        1 gaacaggcca cgccggtggg ggcaccaatg cgcaccccgg ctgaaccctg aacaatgcta
       61 ccgccatact gcgtcatgtc gccctgacgc gctgccggtt ttccgctcat ttctcatcct
      121 tgttttatcg ggttatttgt ccgctgacag gcaaaaccct acagatttat aagaaagcct
      181 taagtgagat atccatcaga tagaaacaat taggaaaata tttatatatt tttcctgaat
      241 atatttcagc tgggtaatac catatctaaa tatttacctg aacatcttcc taataaaaaa
      301 accgccagca tctccactag cggttttcaa tgtattcaaa actcggcaat cagtaaaaat
      361 caccggttgc cttttcggcc tgttccatcc aaaccggttt atcgctggtt ttcgaccaga
      421 cgcggtgcag gtagctgtaa aagcgggcgc ggtctttcca gaaaagcatg aaaggcagcg
      481 ccagaacgcc cgctgcaacc gcatatgtac ggcgtaaaaa gataagccat gcaggatatt
      541 ctctgtagag ttccatactt ttctccccct tttgtatcta cccggtgaat agcaccggaa
      601 aaatgaattt gtttatctga tgaaaatagt accgcctttt gtgtaatttt actactcatc
      661 cgaccactta tttttgctta ttgatggttt atttacattc actctgtaat taagttgcac
      721 aaaagttaaa ttaatgctaa acattagtta aaccatggct tttgccattt ttatactttt
      781 tttacacccc gcccgcagat ttttgcgaaa tctttgcagc cagaattcta ctcttccggt
      841 atcactttta ggccactgga ggtgcactgt gagtgcaggc gtgatagccg gcgtgttgct
      901 ggtgttttta ttactgggtt atttggttta tgccctgatc aatgcggagg cgttctgatg
      961 gctgcgcaag ggttcttact gattgccacg tttttactgg tattaatggt gctggcgcgt
     1021 cctttaggca gcgggctggc gcggctgatt aatgacattc ctcttccagg tacagcgggc
     1081 gttgaacgta tactctttcg tttacctggc gtctctgacc atgagatgaa ctggaagcaa
     1141 tatctttgtg ccattctcgg cctgaacatg ctggggctgg cggtgctgtt ttttatgttg
     1201 ctcggtcagc actatctgcc gcttaatcca cagcagttgc cggggctgtc gtgggatctg
     1261 gcgctgaata ccgccgtcag ctttgtcacg aataccaact ggcaatctta tagcggtgaa
     1321 accacgttga gctatttcag ccagatggca ggcttaacgg tacaaaactt tctttctgcc
     1381 gccagcggga ttgcggtgat ttttgccttc atccgtgcgt ttactcgcca gagcatgagc
     1441 acactcggga atgcctgggt cgatctgcta cgcatcacgt tatgggtgct agtccctgtg
     1501 gcgttgttga tcgcactgtt ttttattcaa caaggtgcgc tgcaaaactt tctgccctat
     1561 caggcagtga ataccgttga aggagcgcaa cagctgttac ccatgggacc agtagcttct
     1621 caggaagcga tcaagatgct cggtactaac ggcggtggct tctttaatgc caactcgtcg
     1681 catccgtttg aaaacccaac cgcactgacc aacttcgtgc agatgctggc gatcttcttg
     1741 atcccaacag ctctgtgctt tgcctttggt gaagtgacgg gcgatcgccg ccaggggcgc
     1801 atgttgctgt gggcgatgtc agtgattttt gtcatctgcg taggcgtggt tatgtgggca
     1861 gaagttcagg gtaatcctca tctgctggcg ctcggcgcag acagcagcat caatatggaa
     1921 ggtaaagaga gccgtttcgg cgtgctggtc agtagcctgt ttgcggtcgt gactacggcg
     1981 gcgtcctgtg gcgcggtgat tgcgatgcat gattcgttta ccgctctcgg cggcatggtg
     2041 ccgatgtggc taatgcaaat tggtgaagtg gtgttcggcg gtgtcggttc tggtctttac
     2101 ggcatgatgc tgtttgtcct gctggcggtg tttattgccg ggctgatgat tggtcgtaca
     2161 ccggaatatc tgggtaaaaa aatcgacgta cgcgagatga aactgactgc actggcgatt
     2221 ctggttactc caacactggt actgatgggc gcggcgttgg cgatgatgac cgacgccgga
     2281 cgtagcgcca tgcttaaccc tggcccgcat ggttttagcg aagtgctgta cgccgtgtcg
     2341 tccgccgcta acaacaacgg cagcgccttt gccggattaa gcgccaactc tccgttctgg
     2401 aactgtttac tggcgttctg catgtttgtc ggtcgcttcg gggtgattat cccggtgatg
     2461 gcaattgccg gttcgctggt gagtaaaaag agccaacccg ccagctccgg cacgctgcca
     2521 acgcacggcc cgctgtttgt tggcctgtta atcggcaccg tgttgctggt tggcgcactg
     2581 acctttatcc ctgccctggc gcttggtccg gtggcggaat atctctcctg atgatattga
     2641 gtgagcactg aatatgagtc gtaaacaact ggcgctattc gaaccaacac ttgtcgttca
     2701 ggcgctgaaa gaagcggtga aaaaattaaa cccgcaggcg caatggcgca atccggtgat
     2761 gtttatcgtc tggatcggca gtctgctgac cacctgtatt agcatcgcga tggcaagcgg
     2821 tgcgatgcct ggcaatgcgc tgtttagcgc ggcaattagc ggctggctgt gggtcaccgt
     2881 actgttcgct aatttcgccg aggcgctggc agaaggccgc agtaaagcgc aggccaacag
     2941 tcttaaaggg gtgaaaaaaa ctgcctttgc ccgcaagctg cgtgagccga aatatggcgc
     3001 tgcggcggac aaagttcctg ccgatcaact gcgtaaaggt gacatcgtgc tggtagaagc
     3061 tggcgatatt atcccctgcg atggtgaagt cattgaaggc ggcgcatcgg tcgatgaaag
     3121 cgccatcacc ggggaatcgg caccggtgat ccgtgaatcc ggcggcgatt ttgcctccgt
     3181 caccggcggc acgcgtattc tttctgactg gctggtgatt gagtgtagcg ttaaccccgg
     3241 tgagacattt ctggatcgga tgatcgcgat ggtggaaggc gcacagcgac gcaaaacacc
     3301 gaacgagatt gccctgacta tcctgctgat tgctctgacc atcgtctttt tactggcaac
     3361 cgccacgctg tggccgtttt ccgcgtgggg cggtaatgcc gtgagtgtaa cggtactggt
     3421 ggcgctgctg gtctgtctga tcccaaccac tattggcggc ctgttgtcag cgatcggcgt
     3481 cgccgggatg agtcggatgc tgggcgcgaa tgtgattgcc accagcggac gtgcagttga
     3541 agcggcaggt gacgttgacg ttctgctact ggataaaacc ggcaccatca cactcggtaa
     3601 ccgtcaggcg tcggagttta tccctgcgca gggcgtggat gaaaaaacgc tggctgacgc
     3661 cgcacaactg gcttcgctgg ctgatgaaac gccggaaggc cgcagtattg tgatcctcgc
     3721 caagcaacgt tttaacctgc gcgagcgcga tgtgcagtcg ctccatgcca cctttgtacc
     3781 gtttactgcg caaagccgga tgagcgggat caacatcgac aaccgcatga tccgtaaagg
     3841 ttctgtcgat gccattcgcc gccatgttga ggctaacggc ggtcacttcc ctgccgatgt
     3901 tgatcaaaaa gtcgatcagg ttgcgcgtca gggggccacg ccgctggtgg tggtggaagg
     3961 ttcccgtgtg ctgggcgtta ttgcgctgaa agatatcgtc aaaggcggta ttaaagagcg
     4021 cttcgcccag ctgcgcaaaa tgggcattaa aacggtgatg attaccggcg ataaccgtct
     4081 gactgccgcc gccattgctg cggaagcggg cgtcgatgat tttctcgccg aagcgacacc
     4141 ggaggccaag ctggcattga ttcgtcagta tcaggcggaa ggccgtttgg tggcgatgac
     4201 cggcgacggc accaacgatg ctccggcgct ggcgcaagca gatatcgcgg tggcgatgaa
     4261 ctccggcacc caggcggcga aagaggcggg caatatggtc gatctcgact ctaacccgac
     4321 caagttgatc gaggtggtgc atattggcaa acagatgctg atgacccgtg gctcgctgac
     4381 caccttcagc attaccaacg atgtggcgaa atacttcgcc attattccgg cggcgttcgc
     4441 ggcaacgtat ccgcagttaa atgcgctgaa catcatgcgc ctgcattcgc ccgactccgc
     4501 cattctcagt gcagtcattt tcaacgcctt gattatcgtc tttttgattc ctctggcgtt
     4561 aaaaggcgtg agttataaac cgcttaccgc ttctgccatg ttgcgccgta acttatggat
     4621 ttacggtctg ggtgggctgc tggtgccgtt tattggtatc aaagtcattg atttactgct
     4681 gaccgtttgc ggtctggtgt gaggtttacc atgcgtggct tacgtccggc attatcgaca
     4741 tttatctttc tgttattgat tactggcggc gtttacccgc tgctgaccac cgtgctgggg
     4801 caatggtggt ttccctggca ggccaacggt tcgttgattc gtgaaggtga tacggtgcgg
     4861 ggttcggcat taatcgggca gaattttacc ggcaacggca gaaatgccct ataatccaca
     4921 ggcttctggc gggagcaatc tggcggtcag taaccctgag ctggataaac aaatagccgc
     4981 acgcgttgct gcattacggg ccgctaaccc ggatgccagt acgaacgttc cggttgaact
     5041 ggtgacggca tcggcaagcg ggctggacaa taatatcacc ccgcaagcgg cggcctggca
     5101 gatcccacgc atcgcgaaag cgcgtaatct cagcgttgaa cagctcacgc agctgatcgc
     5161 aaaatacagc caacaaccgc tggtgaaata tatcggccag ccggtcgtca acattgtcga
     5221 actcaatctg gcgctggata agcttgatga ataacgaacc cttacgtccc gaccccgatc
     5281 gtctgctgga acaaactgcc gcgccgcatc gggggaagct gaaagttttc ttcggtgcct
     5341 gtgcaggcgt cgggaagacc tgggcgatgc tggcagaagc ccagcgactg cgggcgcaag
     5401 ggctggatat tgtggttggc gtggtagaaa cccacgggcg aaaagatacc gacgcaatgc
     5461 tggaagggct ggctgttctg ccgccaaaac gcctggcgta ccgtgggcgg cacatctgcg
     5521 agtttgacct cgatgccgcc ctcgcccgcc gtccggcgct gatcttaatg gacgaactgg
     5581 cgcacagtaa tgcgctaggt tctcgtcacc ctaaacgctg gcaggacatc gaagagctgc
     5641 tggaagcagg cattgatgtt ttcactaccg tcaacgttca gcatctggaa agtctgaatg
     5701 atgtggtcag cggcgtcacc ggaattcagg tacgggaaac cgtgcccgat ccttttttcg
     5761 atgccgccga cgacgtggtt ctggtggact tgcccccgga cgatctgcgc cagcggctga
     5821 aagaaggcaa agtctatatt gccgggcagg cggagcgcgc cattgaacat tttttccgca
     5881 aaggcaatct gatcgccctg cgcgaactgg cactgcgccg tactgccgat cgcgttgatg
     5941 agcaaatgcg cgcctggcgg gggcatcctg gcgaagagaa agtctggcac acgcgcgacg
     6001 cgatcctttt atgcatcggc cataacaccg gtagtgagaa gctggtccgc gcggcggcgc
     6061 ggctggcgtc acggctgggt agcgtctggc acgcggtgta tgttgaaacc cctgccctgc
     6121 accgcttacc ggaaaaaaaa cgtcgggcaa ttctcagcgc cttacgtctg gcgcaggagc
     6181 tgggcgcgga gacggcaaca ctttctgatc cagcggaaga aaaagcagta gtgcgttatg
     6241 cccgtgaaca taatctcggc aagattattc tcggtcgccc ggcctcgcgc cgctggtggc
     6301 gtcgggaaac gtttgctgac cgactggcgc gcatcgcccc cgatctcgat caggtgctgg
     6361 tcgcgcttga tgaaccaccc gcccgcacga ttaacaacgc gccggatagc cgctctttta
     6421 aagacaagtg gcgggtacag attcagggat gcgtggttgc cgccgcgtta tgcgccgtta
     6481 tcactttaat tgccatgcag tggctgatgg cgtttgatgc cgccaacctg gtgatgctgt
     6541 atctgcttgg cgtggtggtg gtggcgctat tttatggacg ctggccttcg gtggttgcta
     6601 ccgtcattaa tgtggtgagt ttcgatctct tttttatcgc cccacgcggc acgctcgccg
     6661 tctctgatgt gcaatatctg ctgaccttcg cagtgatgtt aaccgtcggg ctggtgatcg
     6721 ggaaccttac tgctggcgtg cgttatcagg cgcgggtagc ccgttaccgc gagcaacgca
     6781 cacggcactt atatgaaatg tcgaaagctc tggcggtggg ccgcagtccg caggacatcg
     6841 ccgccaccat cgaacaattt attgcctcca cgtttcatgc ccgcagtcag gtgttgttgc
     6901 ccgatgacaa cggtaaattg cagccgttaa cacatccgca aggaatgacg ccatgggacg
     6961 ataccatcgc gcagtggagt tttgataaag gcctgcctgc gggcgcgggc accgacacgt
     7021 tacccggtgt accgtaccag attttgccgc taaaaagcgg cgagaaaacc tacgggctgg
     7081 tggtagtgga gccggggaat ctgcgccagt tgatgatccc ggaacagcag cgcctgctgg
     7141 agacgtttac gctgttagtc gccaatgccc ttgagcggct gacgctaacc gccagcgaag
     7201 aacaggcgcg gatggcaagc gaacgtgaac agatccgcaa cgccctactg gcagcgcttt
     7261 cgcatgattt acgcacgccg ctcacggtgc tgttcggtca ggcagaaatc ttaacgctcg
     7321 atctggcaag cgaaggatcg ccccacgccc gccaggccag cgagattcgt cagcatgtgc
     7381 tgaacactac ccgactggtg aataatctac tggatatggc gcgaattcag tccggcggct
     7441 ttaatttgaa gaaagagtgg ttaacgctgg aagaagtggt cggtagcgcg ctgcaaatgc
     7501 tggaaccggg tttatcgtcg cccatcaatc tttctctgcc agaaccgctg accttaatcc
     7561 acgttgacgg gccactcttt gaacgggtgc tgattaatct gctggagaac gcggtgaaat
     7621 atgcgggtgc gcaggccgaa attggtatcg atgcccacgt tgagggcgaa aatctacaac
     7681 tggatgtctg ggataacggc cccggtcttc cgccaggcca ggagcagacg atatttgata
     7741 agtttgctcg cgggaataaa gagtcggcag taccgggggt agggcttgga ctggcaattt
     7801 gtcgggcgat agtggatgta cacgggggca ctattaccgc gttcaaccga ccggaaggtg
     7861 gtgcctgttt tcgtgttaca cttccccagc aaactgcccc tgaacttgaa gaatttcatg
     7921 aggatatgtg acaaacgttc tgattgttga agatgaacag gctattcgtc gctttctgcg
     7981 cacggcgctg gagggcgacg ggatgcgcgt ctatgaggcc gaaacgctgc aacgcggctt
     8041 gctggaagcg gctacccgta agccagattt gattattctc gatctcggcc tgcccgatgg
     8101 tgatgggatt gagtttatcc gcgacctgcg ccagtggagc gcggtgccgg tgattgtgct
     8161 ttccgcacgc agcgaagaga gcgacaaaat cgccgcgctg gatgccggag cggatgatta
     8221 tctgagtaag ccgtttggca ttggcgaatt gcaggcccgt ctgcgcgtcg ctttacgccg
     8281 ccactccgct accgccgcgc ccgatccgct ggtgaaattt tccgatgtta ccgtcgattt
     8341 agccgcccgc gtgattcacc ggggtgagga agaggtgcat ctcacaccaa ttgagttcca
     8401 cctgctggcg gtgctgctca acaatgccgg aaaagtactc acccagcgcc agctccttaa
     8461 ccaggtgtgg gggccaaacg cggtcgaaca cagtcactat ttgcgtattt atatgggaca
     8521 tctgcgacaa aaactggaac aggatcccgc ccgcccacgc catttcatta ctgaaaccgg
     8581 tattggctat cggtttatgc tttgaatatt aattttaata cagcctgcct tttattaatt
     8641 aaagccgtaa taataaatac ggctttttat cttaaacaac acacaaaaat aacaattcaa
     8701 tattttatat tactgagtaa aaagctcatc attaaataaa ttaagattga tcatttttta
     8761 ttgatcacct tcacagttca accgtatttc ctggatagaa tatcttcacc ttcattcaca
     8821 tcaggaaagg taaattaaat ggaaaataac agccgcacta tgccccatat aaggcggaca
     8881 actcatatta tgaagtttgc tcatcgcaat agcttcgact ttcacttctt caatgcccgt
     8941 tagtctaccg actaagggca cttcagcgta caggtcttcc tgactctctg tattacaggc
     9001 atatgcctgt attccgcagt gctcattctc tgttaaccct tgtattatca gccaccggac
     9061 tggtaagggt ttctgcattc tgaaaaaagc aatctacctg atttatttat cagcggggta
     9121 actttgcttt tttccggcac gatcgatttc tcattcgaga aattgaggac ctgctattac
     9181 ctaaaataaa gagatgaaaa atgtcaaaat taaaaattgc ggttagtgat tcttgcccgg
     9241 actgttttac cacgcagcga gaatgtatct acattaatga aagtcgtaat atcgatgtgg
     9301 cggcaatcgt tttatcgctc aacgatgtta catgcggaaa actcgatgaa atcgatgcca
     9361 cgggttatgg catcccggta tttattgcta ctgaaaatca agaacgtgta cccgcagagt
     9421 atttgccctg tatttcgggt gtctttgaga attgcgaatc gcgacgagaa ttttatggtc
     9481 gtcagttaga aaccgctgcc agccattatg aaactcaact gcgcccacct ttcttccgcg
     9541 cactggtcga ttatgtcaat caaggtaaca gcgcgtttga ttgccctggt catcagggcg
     9601 gcgaattttt ccgtcgccat ccggcgggga atcagtttgt ggaatacttt ggtgaggcgc
     9661 tgttccgttc cgacttgtgc aacgcagacg tagcaatggg tgatctgctg attcacgaag
     9721 gcgcgccatg cattgcacag caacatgcgg caaaagtgtt caatgccgat aaaacatact
     9781 tcgttctaaa tggcacttca tcttctaaca aagtggtttt aaacgccctg ctgacaccgg
     9841 gtgatctggt gctgtttgac cgcaataacc acaaatctaa ccaccacgga gcgttgctac
     9901 aggctggtgc aacaccggtt tatctggaaa ccgcacgtaa cccgtatggc tttatcggtg
     9961 gcattgatgc gcactgtttt gaagaaagtt acctgcgtga gctgatcgcg gaagtcgcac
    10021 cgcagcggac aaaagaggct cgtcctttcc gcctcgccgt tattcagcta ggcacctacg
    10081 acggtacgat ttataacgcc cgccaggtgg tggataaaat tagtcatctg tgtgactaca
    10141 ttctgtttga ctccgcatgg gtcggctatg agcaatttat cccgatgatg gctgactgtt
    10201 caccgctgtt gctggatctt aatgagaacg atccgggcat tctggttacg caatctgtgc
    10261 ataaacagca ggctggtttt tctcaaactt cacaaatcca taaaaaagac agccacatca
    10321 aagggcaaca gcgttatgta ccgcacaaac gcatgaacaa cgcctttatg atgcatgcct
    10381 ccaccagccc gttctatccg ctgtttgccg cactggatat caacgccaaa atgcatgaag
    10441 gtgtcagcgg tcgtaatatg tggatggatt gtgtggtaaa tggcattaat gcccgcaagc
    10501 tgatcctcga taactgtcag catattcgtc cgttcgtacc tgaactagtg gatggtaaac
    10561 cctggcagtc gtatgaaaca gcgcaaattg cggttgatct gcgcttcttc cagtttgtac
    10621 caggggaaca ctggcactct tttgaaggct atgcagagaa tcaatacttt gtcgatccat
    10681 gcaaactgtt gctgacaacc ccaggttttg atgcacgtaa cggcgaatat gaagcgttcg
    10741 gtgtacccgc gacgattctt gctaacttcc tgcgcgaaaa tggcgtagtg ccggaaaaat
    10801 gcgatcttaa ctccatcctc ttcctgctga ctccggcaga agatatggcc aaacttcagc
    10861 aacttgttgc cctgctggta cgcttcgaaa aactgcttga gtccgacgcg ccattagcag
    10921 aagtgctgcc ttccatctac aaacagcatg aagagcgcta cgccggttat acccttcgtc
    10981 agttatgcca ggaaatgcat gatttgtatg cccgtcacaa cgtgaaacaa ccgcaaaaag
    11041 agatgttccg taaggaacac ttcccacgcg taagcatgaa tccacaagaa gccaactacg
    11101 cctattcacg cggtgaagtg gagctggttc gtctgccgga tgccgaaggc cgtatcgctg
    11161 ccgaaggtgc gcttccttat cctccgggtg tgctgtgtgt tgttccgggt gaaatctggg
    11221 gtggtgctgt tttgcgttac ttcagcgctc tggaagaagg gatcaacctg ctgccaggtt
    11281 ttgcaccgga gctgcagggt gtctatatcg aagaacatga tggtcgtaag caagtttggt
    11341 gctatgtcat caagcctcgt gatgcgcaaa gcaccctgtt gaaaggggaa aaattatgag
    11401 tcaggctaaa tcgaacaaaa tgggcgtcgt tcagttaacc atactgacga tggtcaacat
    11461 gatgggctcc ggtatcatca tgctgccgac aaagcttgcc gaagttggga caatctcaat
    11521 tatctcctgg ctggtgacag ccgtaggctc aatggcactg gcatgggcat tcgcaaaatg
    11581 cggtatgttc agccgtaaat caggcggtat gggcggttat gcggagtatg ctttcggtaa
    11641 gtccggcaat tttatggcga actacaccta cggtgtctcg ctgctgattg ctaacgtcgc
    11701 gattgctatt tcggcggttg gttacggcac cgaactgctc ggcgcgagtt tgtcgccagt
    11761 gcagattggt cttgcgacca tcggagtgct gtggatttgt accgtggcta actttggtgg
    11821 tgcgcgcatt accgggcaaa tcagtagcat tactgtgtgg ggagtcatta ttccggtcgt
    11881 cggtctgtgc attattggct ggttctggtt tagtccgacg ctgtacgcta actcatggaa
    11941 cccgcaccat gtgccgttct ttagcgctgt aggttcttcc atcgccatga cgttgtgggc
    12001 tttcctcggt ctggagtcag cctgtgccaa cgccgaagta gtggaaaacc cggaacgtaa
    12061 cgtgccgatt gcagttcttg gcggtacttt aggtgcggcg gtgatttata tcgtctccac
    12121 caacgtgatt gccgggattg tgcctaatat ggagctggca aattcaacgg caccatttgg
    12181 cctggctttc gcacagatgt tcacaccaga agtgggtaaa gtcattatgg cgctgatggt
    12241 gatgtcctgc tgcggttcac tgcttggctg gcggttcact gcttggctgg cagttcacca
    12301 ttgcccaggt gtttaaatct tcatctgatg aaggctactt ccctaaaatt ttctcccgtg
    12361 taaccaaagt ggatgcaccg gtgcagggaa tgttgaccat tgtgattatt cagagtggat
    12421 tggcactgat gaccattagc ccgtcactga acagccagtt caacgtgctg gttaacctgg
    12481 ccgtggtgac caatatcatt ccgtatattc tgtcaatggc ggcattagtc attattcaga
    12541 aggtcgctaa tgtgcccccc tcaaaagcga aagtagcaaa ctttgttgcc tttgttggtg
    12601 cgatgtacag tttctatgcg ctgtactcat ccggggaaga agccatgctg tacggttcta
    12661 tcgtgacctt ccttggttgg acactgtatg gtctggtatc accatgcttt gaactgaaaa
    12721 ataaacacgg ttaataaaac aaagtaaaaa agggcgattg aatgatcgcc ctttctgttt
    12781 gttggcaaat agttcgttat ttatgccgca tccggcagat gtagggtcta aacgcgatcg
    12841 aacacagcaa ctatttgcgt aattatatgg ggcatctgcg acaaaaactg gaacaggatc
    12901 cggcccggcc tcgccatttt attactgaaa ccggtattgg gtatcggttt atgctttgaa
    12961 aaaagtggca atgtatggat aaagtcattt tttattcaaa tataaggaac ttaatattta
    13021 aaaaatgttc catacaattc ctcatcataa atgacaccgt agcacacaag gagcaagtag
    13081 cgatgcgtga aatgaatcag ttagtaaata ctgaagattc agcctggcca ataatccaga
    13141 actggttaaa agacgccaca aaccataccg aactcttacc ggttaataaa aatttagccg
    13201 aaaccgcact ttatcaatta caggtgacaa caaaatcacc gatgggtgcg cttgtctatg
    13261 gctccggagg tctgctgatt gataatggtt ggttacgcat agcaggatct ggtcaccccc
    13321 ggttgccacg agatccagta agttggacac aacgccctga attcgcaggc gtgcgggctt
    13381 tacccatcgc tgacgatgtc gcagggggaa tttttgctct taatggtggc gatcttgggg
    13441 aagatactgg ctgcgtttat tattttgcgc cagatacgct gaattgggaa agtctggaag
    13501 ttggatattc tgagtttctt cagtgggcat tatccggtga tttagatacc ttctatgaaa
    13561 atgtacgatg gcagcaatgg cgagaagacg taataaaatt atcggcaacg gaagccttca
    13621 cgttctaccc tttcttatgg gtacaaagtg aagaagcaag aacaagaaaa gttatttcgc
    13681 ttactgaact ctgggaaatg cagtatcaaa tgaaagaaac attcacgcaa taagacatgt
    13741 tcaggtccgg gtttcattcc cggactcact attttaatgt gtatttatcg ctttcaattc
    13801 ttgctggcaa ttttctgact ggcagcgtcg taactcaata atcccgacat gcatcatcga
    13861 gccaaaaaat ccgctttcgc tgacataatc ctcattgact atcggtcgag tgccgggctt
    13921 gccctggcaa acccgcataa aaaatgaggt gtagcattgc caaccgggat ttaaaccgac
    13981 cttttcttgt gctgacatat tatgaagata agtaagttct ttttcgttcc cgcctgacaa
    14041 ctgccagcgg cgggtattat caggtaagtt atcaccacgg caatttgtct tacaccggga
    14101 aggtgcaata tttaccgcaa tgctacccgt taatcttctg gttttatctt taggggtcag
    14161 taaccagtcg ccagctaatg atgattgttc aggttgggcg catgcagtca gcagtaatgt
    14221 ggcggtaatt agtgacacta tgacgaccag actcctgttg gtcttcattg ggatttcctt
    14281 gagctactca gtttgttgac aaagtgttcg ttgtttttgc cggatgcggc gtgaacgcct
    14341 tatccggcct acaaaatctc gtaaattcaa tatattgcac catcctcgta ggcctgataa
    14401 gcgtagcgca tcaggcaatt ctgtgtttgt catacgtaaa aaagggcgat cttccgaccg
    14461 ccctttttct tatttaatgt gtttacgcgt ttttcagaac ttcgctaaca atctcaaccg
    14521 cttctttctc aatctgcttg cgatgttctt caccgaggaa gctttcgcag tagatcttat
    14581 atgcgtcttc cgtgcctgac ggacgcgcgg cgaaccagcc gttgtcagtc atcactttca
    14641 gaccgccgat agaagcacca ttgcccggtg ccgccgtcag gcgcgcggtg atcgggtcgc
    14701 ctgccagggt gctggcgctc accatttccg gagacagctt agacagcgcc gctttttgtg
    14761 cggaagtcgc agctgcctgc aaacggttgt agctcggcgc accaaagcgt tttgccagtt
    14821 cgttgtagtg ttcctgcggg ttcttaccgg tgacagcggt gatttccgcc gccagcagac
    14881 acatgatgat gccgtctttg tcggtggacc acggcgtgcc gtcgaaacgc aggaaggaag
    14941 cccctgcgct ctcttcgccg ccaaagccga agctgccgtc gaacagacca tcaacaaacc
    15001 atttgaaacc taccgggact tctaccagct tgcggcccaa gtcattgacc acacggtcga
    15061 tcatcgcaga agaaaccagc gttttaccga cagcaacatc tttgccccac tgcggacgat
    15121 gctggaacag gtagttgatc gccaccgcca ggtagtggtt cggattcatc aaacctgccg
    15181 gagtgacgat accgtgacgg tcataatccg ggtcgttagc aaacgccaga tcgaacttat
    15241 cacgcagtgc cagcaggccc gccatcgcac actcggagga gcagtccata cggatcgcgc
    15301 cgtctttatc aaggtgcata aagcggaagg tttgatcgac ctgatcgtta acgatggtca
    15361 ggttgaggtt gtaatactcg ccaatacgct tccagtattc gataccggaa ccgcccagcg
    15421 gatcaacgcc cagcgtcagg cccgctttct gaatcgccgc catatcaacg atatcggcca
    15481 gaccttccac aaacggctgc accagatcct gctctttcac atgaccggat gccatcgctt
    15541 cgtcgaggga gatacgcttc acgcctttca ggccatcggc cagcagtgcg ttggccctgt
    15601 cttccaccac tttggtgacg ttggtatcag ccgggccacc atttggcgga ttgtacttga
    15661 taccaccatc ttccggcggg ttatgggacg gtgtaatcac gataccgtct gccagcggac
    15721 cacctttttt attgtgaacc aggatggcat tggaaacggc aggcgttgga gtgaagccat
    15781 tgttttcctg cacaatgaca tcaacgccgt tcgctgccag cacttccagt acggaaatga
    15841 acgcaggctc ggacagggcg tgagtatctt tacccacata gcaagggcca gtgatgccgt
    15901 ttttcgcacg ttcttcagca attgcctgag cgatcgccag aatgtgcggc tcgttaaagc
    15961 tgtggcgcgc tgcactgcca cggtgaccgg aagtaccgaa tttcaccgcg tgctccgcat
    16021 tccctgcttc tggtttcagt acataatatt gcgccgtcag ttgggcgacg ttaatcaaat
    16081 cactctgttg tgcaggttgg cctgcacgat tgtggattgc cattgctttg tcctttgtct
    16141 gcaacgtttt agatagttcc gcaaaccttc tcaatcaatt ccgccgggaa ttgcatcgac
    16201 tgcatgatgt gttcgatcat gctgcattta cggccggtgt tggtgttggt gatcacccaa
    16261 tacggcgtgc ctggcacatg tttcggcttg gtctgattac catttttcag cagcgtttgt
    16321 tcatctgccg caaagtaaac gcgtgtacga ccgtgcaacg attccgttgc ttcggcaaac
    16381 gcctgggcgt caagagaata tagtgtagac aacagcagca taaagcgatt gaccgctcgc
    16441 ttttgctctg cgtattcgtc agaaagcaga agttcacgca ttgcgcgaac cttgtcttta
    16501 atcgttttga ccggcttcgc ttcggcgata gcaggtgacg caacgcgaac ctctttcgtc
    16561 accggagcag caggctgtga tgcggcggaa aatttcaaca tacgccgtaa aatgtcggat
    16621 gcgctctcgc cgatatgctt agtgtggctg gcaatatagc tgtagagttc atcatcaact
    16681 tcaatcgttt tcatcttaat ccagtgcagt gtcttagctg aatacaagtc gccaagagta
    16741 tatgaataaa tcccggcagc ggatagcgtc aagcctggct tgcagaaaaa ctcggaataa
    16801 accttatttg ttgcagccct gtggcacaat ggtcaacata ataccctaac ccgacaacgc
    16861 gaaaaaaaga actttgccat gaaattgaat atccgcgcgc aaactgcaca aaaccagcac
    16921 aataattctc ccatcgttct tgtccatggt ctgtttggta gcctcgacaa ccttggcgta
    16981 ctggctcgcg atctggtaaa cgatcacaat atcatccagg ttgatatgcg taaccacggt
    17041 ctttcaccga gagatccggt aatgaattac ccggcgatgg cgcaggatct tgttgatact
    17101 ctggatgcac agcagatcga caaagcaaca tttatcggtc actccatggg cggtaaagcg
    17161 gtaatggcac ttacggcact ggcccgcgat cgcatcgata aactggtggc gatcgatatc
    17221 gcaccggtcg actatcacgt acgccgtcat gatgagattt tcgcggctat caacgcggtc
    17281 agtgaatcgg acgcacaaac tcgccagcaa gcagcagcaa taatgcgcca gcatcttaat
    17341 gaagaagggg tgattcagtt tctgttgaaa tcttttgttg acggggagtg gcgctttaac
    17401 gtgccggtat tgtgggatca gtatccgcat attgtgggtt gggagaaaat cccggcatgg
    17461 gatcaccctg ccctgtttat ccctagcggc aattctccgt atgttagcga gcagtaccgt
    17521 gatgatttac tggcacaatt tccacaggca cgggcgcatg tgattgcagg cgcgggtcac
    17581 tgggtccatg ctgaaaaacc ggatgcggta ttacgcgcta tccgtcgcta tctcaatgat
    17641 taacgcaact gattaaaaac ccagcgtccg cgtcgctttc cgcgcgtggg cgttggcgtg
    17701 actcatcgcg ctgatgtatt atggcgcgct atccatccgg gcagaggcct ggctgattgt
    17761 ttcccccgaa gtcaccaaga tcatggccaa agaacaaacg gaccgtacga cattagatct
    17821 gttcgcgcac gagcgtcgac cgggacgacc gaaaactaat ccgctttcgc gcgatgaaca
    17881 gctgcgtatt aataaacgca accagctaaa acgcgacaaa gtacgtggcc ttaagcgtgt
    17941 cgaactgaag ctgaacgcgg aagctgtcga ggcgctgaac gagctggcgg agtcgcgcaa
    18001 tatgagccgt agcgaactga tcgaagagat gttaatgcag caactggcgg cgctgcgtag
    18061 tcagggcatc gtttaaattt ccactttcat gtagcacagt gtgcagtcct gctcgtttgc
    18121 tgattccgaa agactgcctg ttctgctatg attgccttta tccgtgggca attttccacc
    18181 cccatttcaa taagtttcaa gaggttattt cactcatggc tatcactggc atctttttcg
    18241 gcagcgacac cggtaatacc gaaaatatcg caaaaatgat tcaaaaacag cttggtaaag
    18301 acgttgccga tgtccatgac attgcaaaaa gcagcaaaga agatctggaa gcttatgaca
    18361 ttctgctgct gggcatccca acctggtatt atggcgaagc gcagtgtgac tgggatgact
    18421 tcttcccgac tctcgaagag attgatttca acggcaaact ggttgcgctg tttggttgtg
    18481 gtgaccagga agattacgcc gaatatttct gcgacgcatt gggcaccatc cgcgacatca
    18541 ttgaaccgcg cggtgcaacg atcgttggtc actggccaac tgcgggctat catttcgaag
    18601 catcaaaagg tctggctgat gacgaccact ttgtcggtct ggctatcgac gaagaccgtc
    18661 agccggaact gaccgctgaa cgtgtagaaa aatgggttaa acagatttct gaagagttgc
    18721 atctcgacga aattctcaat gcctgatgtg atgcggcgta gactcatgtc tacgccgtat
    18781 taatagataa tgccaatcaa aataattgct acaaatttgt aacttttgct gttgtacctg
    18841 tacaatgtcc cggtgttcaa gtggccttgc cgttgtaaat gtaagctgtg ccacgttttt
    18901 attaacaata tttgccaggg acttgtggtt ttcatttagg cgtggcaatt ctataatgat
    18961 acgcattatc tcaagagcaa attctgtcac ttcttctaat gaagtgaacc gcttagtaac
    19021 aggacagatt ccgcatgact gataacaata ccgccctaaa gaaagctggc ctgaaagtaa
    19081 cgcttcctcg tttaaaaatc ctggaagttc ttcaggagcc ggacaaccat cacgtcagtg
    19141 cggaagattt atacaaacgt ctgatcgata tgggtgaaga aattggtctg gctacggtat
    19201 atcgcgtact gaaccagttt gacgacgctg gtatcgtcac ccgccacaat tttgaaggcg
    19261 gtaaatccgt atttgaactg acacagcaac atcaccacga tcacctgatc tgcctcgact
    19321 gcggcaaggt tatcgaattt agtgatgatt ccatcgaagc gcgtcagcgt gaaattgccg
    19381 caaaacatgg cattcgcctg actaaccaca gtctctatct ttacggtcac tgtgccgaag
    19441 gcgattgccg cgaagatgaa catgcgcacg aaggcaaata agccagcctg aatgagaaaa
    19501 agccaacctg cgggttggct tttttatgca agggaaataa gaaaagcgag agttacagct
    19561 ctcacttatt tgttattact gcgaatttcc tgccaaactt tatcacaatc ggctttcacc
    19621 gcctgatcat ttccggtttg cgttgcacgc agacactgct gataatccag tacgcggaca
    19681 ctttcctggt cggcaaaatg ctgatgttgt ttctctttct tcagcacgtt taacacgctc
    19741 tggcaggctt caattttttc tggcgaacct tgtgcggtgt tgatacaggc gctgtatgcc
    19801 tctttcagac gactgtcttc ctgtggcgcg gttgattgcg cacaagctac cagccccgat
    19861 gccattatgg cgatgagaat cagttttttc atagcaaatt cctcaaacgt gcggcaggca
    19921 caaaacctgc cgcgtcgggc atcagaagat ggtgaatggt gcgattacca taaatttcac
    19981 gtcacgctca tcctggaaga tgttgccgta accaccgccc cagcttggga tgtcggagtg
    20041 gttgtcgtat tcggtgaagt gcagtttgaa catcgtgcct ttggcgcgac cgtcctgaat
    20101 ggtgtagacc gcatccaggc tgtatgcaga ctcttcaata gtccggtttt tgtcgtagta
    20161 cgcatccgga ttgctctgcc aggtcgcagg tttagcatcc catgcgtaaa cgtaggaagc
    20221 gccgatggcg aagcctagaa gattccagtt tttcaggtca tacatcgcac cgaagaagac
    20281 cgctttttcg ccgttagcgt tgaagtcgga acggttatcc caccagatat ccaggcggcc
    20341 gttggaggaa gcgtaggctg gagtcatacg ttgcaggaag tatccctgct gaccgtcagc
    20401 cttaacccag gtgccttcga ggcgcaaatc cactacgtca gccgcccggt aaccaaaggt
    20461 caacgcttgc agccaggcgg tgccgtcata aaggtcgttg acgctgcgat cgtcaacttt
    20521 atcgcgcgta ccatagaact ggtagctggt ggttaacggg ctaccggcga tatcaaattt
    20581 gtagctggct ttggcaaaat attgatcgat atacccttcc gcctgaccaa atgccgcttc
    20641 cagtacgaag ttatttttga agtcgtattt cgccccaagg gagtgcagat aatcaacttt
    20701 ggtggtttta tcgttctgat aaaactcatc catttccaga tgccacggcg ctttgtattc
    20761 gttggtccac atgtaggaga aactcaacgc accagcatcg ccgtaatcaa aattcgcccc
    20821 ggcttccgcc ccctgataag tacctggcat aaagctccag tgcggcgcta acagcgtttg
    20881 accagttggc tgaatgtaac ctgccctcgc ccaaaccgga ccgtatttaa atttggccgc
    20941 agctttatac aggcttatac cgcttttgtc gccggaccag tcttcgtcat aggctttatt
    21001 actttttgaa aacgcgattt cgttcgggtg ggagctgtcg ccgttttccg ccatttcaat
    21061 cgccgtaaac acagcaatat caaggccgaa catatcagca gcataaccgg actgaaaatc
    21121 gaggttggca ttccaggtgg agtgagaaag gttggttttg tatttgtcgc cgtcggtaac
    21181 atctttacgg tcgcgttcac gctgccagta atatataccg ccggttaagg ttgaatcgtc
    21241 gatgaatcct tcggcgcgag cctccggcat tgccataaag cccgacattg ctgtaacacc
    21301 ggcgatagcc agcgccagcg tactacgttt gccactaaac gtacgcatgg gttaatcctc
    21361 tttgacgtat aaattgctgc accaaaggtg aacagcgaaa aaaataaaaa ttaaaaaagt
    21421 agcattgaga aaagtctcgc tgactacagg aatagactat ttttcgcgac gcgaattatc
    21481 aatctctttc tgtaaccaga atgtaagaac atgagcaacc gcacatattt tgatgatttt
    21541 tgttacaagg cttaagtttg cggttgaaag gcttgcagaa gaataaaagc gtaaatttcc
    21601 agcaagatga aagcggttac attttattta attatggttt gtgattttaa atttatttta
    21661 tggataaatt gcgaagcgga attaattcgc gaagaaaagc agaaaaaacg ccgcagagtg
    21721 cggcgtttgg gattgtttgc tatttcttgc cggatgcgac gtaaatgcct cacccggcct
    21781 ggtagaactt aaaattactc gcctactttc gcccaggtat cacgcagccc aacggtgcgg
    21841 ttaaataccg gtttttccgc tgtggaatgg cggctgtcga ggcagaagta accttcacgc
    21901 tcaaactgga atgctttacc cgcaaccgca tctttcagcg acggttcagc aaagccctgt
    21961 ttgatcacca gcgattccgg gttaatcacc gacaggaaat catccgcagc acctgggtta
    22021 ggcacgctga acagacggtc gtacagacgg atttcaaccg gcagcgcatg tgccgcgctc
    22081 acccagtgaa taacaccttt gactttacga ccatctgccg gatctttgct taaggtgtcg
    22141 gcgtcataag tacagaagat ggtggtgata ttgccttcgg catctttctc cacgcgttct
    22201 gccttaatga cgtaagcatt acgcagacgc acttctttac ccagcaccag acgtttgtac
    22261 tgcttgttag cttcttcgcg gaaatcggcg cgatcgatcc aaatctcact gctaaacggc
    22321 acctggcggc tacccatttc cggtttgttc ggatggttcg gcatggtaac catttcgcct
    22381 tcgccctgat agttttcgat aaccagtttc accggatcga taaccgccat tgcgcgcggg
    22441 gcgttttcgt tgagatcttc acggatgcag gattccagcg acgccatctc aatggtgttg
    22501 tcctgcctgg tcacgccgat gcgtttgcag aactcacgaa tagaagcagc agtgtaacca
    22561 cgacgacgca gaccggaaat ggtcggcata cgcgggtcat cccagccttc aacgtgcttg
    22621 tcggtcacca gcaggttcag cttacgcttg gacatcacag tgtattccag attcaggcgc
    22681 gagaattcgt actggcgcgg gtgaacagga atggtgatgt tgtccagcac ccagtcgtac
    22741 aggcgacggt tgtcctggaa ctcaagcgta cacagagagt gcgtaatacc ttccagggca
    22801 tcgctgatgc agtgggtgaa gtcgtacatc gggtagatgc accacttgtt gccagtctgg
    22861 tggtgttcag caaatttaat gcggtacagc accggatcgc gcatcacgat aaacggtgaa
    22921 gccatgtcga ttttcgcacg caggcaggct ttaccttctt caaaaccacc ggcacgcatt
    22981 ttttcgaaca gcgccaggtt ctcttcaacg ctgcggtcgc ggtacgggct gtttttaccc
    23041 ggttgcgtca gggtgccgcg gtattcgcgg atctgttccg gcgtcagttc atcaacgtac
    23101 gccaggcctt tattgatcag ttcgatcgca taggcgtgga gctgatcaaa ataatcggag
    23161 gagtaacgga cgttaccaga ccagtgaaaa cctaaccact ctacgtcgtt tttgatcgac
    23221 tcaacatact cgatatcttc ttttaccggg ttagtgtcgt cgaaacgcag gttgcactgg
    23281 cctttatagt cctgggcgat cccgaagttc aggcagatag atttcgcatg gccaatatgc
    23341 agatagccat tcggctccgg cgggaaacgg gtgtgtactg tggtgtgctt accactggcc
    23401 agatcttcat cgatgatctg acggataaag ttagtcgggc gggcttctgc ctcactcatc
    23461 gtggattcct caaagcgtaa acaacgtata acggcgtatg atcttataag cggaacaggc
    23521 tgacaactgt tagtttttta aaattgataa tctaacaagg attatgggga tgattgatga
    23581 aaaaaaaagc ggcagagaag atctccaccg cttgtcattg ttggatgcga cgctcaagcg
    23641 tcgcatcagg cataaagcag attacttttt gatttcatac agcggtgttt gacccgccac
    23701 aacatggccc tgagctttaa tgatcaagcc actgaaatcg tcgatattgc tgcaaaccac
    23761 cgggctaatc atcgagcggg cgttagcgtt caggtaatcc agatccattt ccagaatcgg
    23821 ttgccctgcg cttacctgcg caccctcttc caccagacgt ttaaagcctt taccttccag
    23881 cgctacggtg tcgataccca tatggacgac gatctccgcg cctttttcgg tttccaggca
    23941 gaacgcgtgg ttggtgttga agattttcac gattgtccct gcggctggtg atacgacgat
    24001 tttatctgtc ggtttcaccg ccacaccgtc acccaccgct ttgctggcga atgcttcgtc
    24061 aggaacctga tccagtgcca cgacatcacc ggtaatcggc gataccagct ccgcgataga
    24121 taccgcgttt ggtacagcct gcggttttgc tacaggcgcg gcagttgacg gagttgcttc
    24181 agctgacgca gcggctaccg gaccacgggc aacgactttc ttcatcgcat cgccgatgga
    24241 ttctgctttc gcgccaacaa tcacctgaat agtctgtttg ttcagtttca ctacaccaga
    24301 agcacccaga cgtttacaca tcgtatcgtt gacgcgggca gagtcagcca cggtcaggcg
    24361 cagacgggtg atacaggcgt caattgcttt caggttgtca gtgccgccaa ccgcagcaat
    24421 atagttggtc gccagttgat tgaggccttc ttcagtgttg ctgttggctt cttcagtaac
    24481 gatctcatct tctttatctt cacgacccgg cgttttcagg ttgaacatgc ggataaccaa
    24541 actgaacacc acgaagtaga tagcgaagaa gacaacaccc atcaccagca gcatccagac
    24601 gttctggctg gcggccggca ggttatacat caacgcgtag tcgatagccc ccgcagagaa
    24661 agagaagcca gcatggatac ccagcagtgt tgccacaaac aggctgatac cggtcagcag
    24721 tgcgtgcagg aggtacagca gcggtgcaag gaacatgaac aggaattcca gcggctcagt
    24781 cacaccggtc aggaacgcag taacagcaac agaaagcagc atcccgccaa ccatcggacg
    24841 acgctctttc ggtgctgcga agtacatcgc cagcgccgca cccggcagac cgaacatcat
    24901 aatcgggaag aagccggaca tgaacatccc cgcggtgccg tcaccggcat agaagcggtt
    24961 gatatcaccg tggaaaaccg tacccgccgc gttggtgaat tcaccaatct ggaaccaggc
    25021 gatggtgttc agcacctgat gcagaccggt tgggatcagc agacggttga tgaaaccaaa
    25081 gataccggaa cccagcgcgc ccgcagaaac gatccactcg cctcctgcat ggatagcgtg
    25141 ctgtaccggc ggccagacgt aaccaaaaat ggccgccagc accaggcaga agaagccggt
    25201 ggcaatcggc acaaagcgtt tgccgccgaa gaagctcagg aagtccggca gtttaatatc
    25261 ggaccaacgg ttataggctg cgccaccaac cagaccggta atgatacccg ccagtacacc
    25321 catgtttatt tctgggttga tggtcaccat cgctttggtt aacacaaagt aacctaccgc
    25381 acccgccagc gccgccgcac ctgcgctgtc tttcgaccag ctggatgcca caccgatggc
    25441 gaagattaat gcgaggttat caaaaatcgc accgcccgcc tgggcaataa acgcaacgtt
    25501 aagtaaatct ggctgaccga atcgcagcaa cagtgccgcc accggcagca ccgcgatagg
    25561 gagctgtaac gccctaccga gtcgctggaa aaaacctaaa atattcatct tattccccct
    25621 acgagaaccc tatttggctc gtttaaagcc gtatttttat tttgctgcaa attgtactgc
    25681 cgatgttctg taatcagatt gttagatcat ctgctacaga gtgtgtgaaa atttaattcg
    25741 tatcgcaaat taaacgcgtg tcttttgtga gttttgtcac caaatatcgt tatcatcact
    25801 cccttttact ggctaaacca gaaaacttat tttatcattc aaaaaatcag gtcggattga
    25861 cgcctgtctg cgcaaatcca agttacgctt aaagatgcct aatccgccaa cggcttacat
    25921 tttacttatt gaggtgaata atgagactga tccccctgac taccgctgaa caggtcggca
    25981 aatgggctgc tcgccatatc gtcaatcgta tcaatgcgtt caaaccgact gccgatcgtc
    26041 cgtttgttct gggcctgcca actggcggca cgccgatgac cacctataaa gcgttagtcg
    26101 aaatgcataa agcaggccag gtcagcttta agcacgttgt caccttcaac atggacgaat
    26161 atgtcggtct gccgaaagag catccggaaa gctactacag ctttatgcac cgtaatttct
    26221 tcgatcacgt tgatattcca gcagaaaaca tcaaccttct caacggcaac gccccggata
    26281 tcgacgccga atgccgccag tatgaagaaa aaatccgttc ttacggaaaa attcatctgt
    26341 ttatgggcgg tgtaggtaac gacggccata ttgcatttaa cgaaccggcg tcttctctgg
    26401 cttctcgtac tcgtatcaaa accctgactc atgacactcg cgtcgcgaac tctcgtttct
    26461 ttgataacga tgtcaatcag gtgccaaaat atgccctgac tgtcggtgtt ggtacattgc
    26521 tggatgccga agaagtgatg attctggtgc tgggtagcca gaaagcactg gcactgcagg
    26581 ctgcagttga aggttgcgtg aaccacatgt ggaccatcag ctgtctgcaa ctgcatccaa
    26641 aagcgatcat ggtgtgcgat gaaccttcca ccatggagct gaaagttaag actttaagat
    26701 atttcaatga attagaagca gaaaatatca aaggtctgta attgttatcc ctgccctggc
    26761 tccttgctca gggcaatatt ttttaaaatc gggggtcaga atgtatgcat taacccaggg
    26821 ccggatcttt accggccacg aatttcttga tgaccacgcg gttgttatcg ctgatggcct
    26881 gattaaaagc gtctgtccgg tagcggaact gccgccagag atcgaacaac gttcactgaa
    26941 cggggccatt ctctcccccg gttttatcga tgtgcagtta aacggctgcg gcggcgtaca
    27001 gtttaacgac accgctgaag cggtcagcgt ggaaacgctg gaaatcatgc agaaagccaa
    27061 tgagaaatca ggctgtacta actatctgcc gacgcttatc accaccagcg atgagctgat
    27121 gaaacagggc gtgcgcgtta tgcgcgagta cctggcaaga catccgaatc aggcgttagg
    27181 tctgcatctg gaaggtccgt ggctgaatct ggtaaaaaaa ggcacccata atccgaattt
    27241 tgtgcgtaag cctgatgccg cgctggtcga tttcctgtgt gaaaacgccg acgtcattac
    27301 caaagtgacc ctggcaccgg aaatggttcc tgcggaagtc atcagcaaac tggcaaatgc
    27361 cgggattgtg gtttctgccg gtcactccaa cgcgacgttg aaagaagcga aagccggttt
    27421 ccgcgcgggg attacctttg ccacccatct gtacaacgcg atgccgtata ttaccggtcg
    27481 tgaaccgggc ctggcgggcg cgatcctcga cgaagctgac atttattgcg gtattatcgc
    27541 tgatggcctg catgttgatt acgccaacat tcgtaacgct aaacgcctta aaggcgacaa
    27601 actgtgtctg gttaccgacg ccaccgcgcc agcaggtgcc aacattgaac agttcatttt
    27661 tgcgggtaaa acaatatact accgtaacgg actttgtgtg gatgagaacg gtacgttaag
    27721 cggttcatcc ttaaccatga ttgaaggcgt gcgtaatctg gtcgaacatt gcggtatcgc
    27781 actggatgaa gtgctgcgta tggcgacgct ctatccggcg cgtgcgattg gcgttgagaa
    27841 acgtctcggc acactcgccg caggtaaagt agccaacctg accgcattca cacctgattt
    27901 taaaatcacc aagaccatcg ttaacggtaa cgaggtcgta actcaataag agaaagtatg
    27961 acaccaggcg gacaagctca gataggtaat gttgatctcg taaaacagct taacagcgcg
    28021 gcggtttatc gcctgattga ccagtacggg ccaatctcgc ggattcagat tgccgagcaa
    28081 agccagcttg cccccgccag cgtaaccaaa attacgcgtc agcttatcga acgcgggctg
    28141 atcaaagaag ttgatcagca ggcctccacc gggggccgcc gcgctatctc catcgtcacc
    28201 gaaacccgca atttccacgc aatcggcgta cggcttggtc gtcacgacgc caccatcacc
    28261 ctgtttgatc tcagcagcaa agtgctggca gaagaacatt acccgctgcc ggaacgtacc
    28321 cagcaaacgc tggaacatgc cctgttgaat gccattgctc agtttattga tagctaccag
    28381 cgcaaactgc gcgagctgat cgcgatttcg gtgatcctgc cagggcttgt tgacccggac
    28441 agcggcaaaa ttcattacat gccgcatatt caggtagaaa actgggggct ggtagaagct
    28501 ctggaagaac gttttaaagt gacctgtttc gttggtcacg atatccgtag tctggcgctg
    28561 gcggagcact acttcggtgc aagtcaggat tgcgaagact ccattctggt gcgtgtccat
    28621 cgcggaaccg gggccgggat tatctctaac gggcgcattt ttattggccg caacggtaac
    28681 gtcggtgaaa ttggccatat tcaggtcgaa ccgctgggtg aacgctgcca ctgcggcaac
    28741 tttggctgcc tggaaactat cgccgccaac gctgccattg aacaacgggt gttgaatctg
    28801 ttaaagcagg gctaccagag ccgcgtgccg ctggacgact gcaccatcaa aactatctgc
    28861 aaagccgcga acaaaggcga tagtctggcg tcggaagtaa ttgagtatgt cggtcgtcat
    28921 ctgggtaaaa ccatcgccat tgctatcaac ttatttaatc cgcaaaaaat tgttattgcc
    28981 ggtgaaatca ccgaagccga taaagtgctg ctccctgcta ttgaaagctg cattaatacc
    29041 caggcgctga aggcgtttcg cactaatctg ccggtggtac gttctgagct ggatcaccgc
    29101 tcggcaatcg gcgcttttgc gctggtaaaa cgcgccatgc tcaacggtat tttgctccag
    29161 catttgctgg aaaattaatg tgcttttata gtggcgctta ttgttgtcaa tattctgggt
    29221 agtccatgac cattaaaaat gtaatttgcg atatcgatgg cgtgctgatg cacgataacg
    29281 tcgccgtacc gggtgcagcg gaatttttgc acgggattat ggataaaggc ctgccgctgg
    29341 tgttgctgac caactatcct tcgcagactg ggcaagatct ggcgaaccgc tttgccaccg
    29401 caggtgtcga tgtacctgac agcgtgtttt atacctctgc gatggcgact gccgatttcc
    29461 tgcgtcgcca ggaaggcaag aaagcgtatg tggtgggcga aggcgcactg attcatgaac
    29521 tgtacaaagc cggtttcact attaccgatg tgaaccctga tttcgtgatt gttggcgaaa
    29581 cgagttccta caactgggac atgatgcata aagcagccta tttcgtcgct aacggtgcac
    29641 gttttatcgc caccaatccg gacacccacg ggcgcggttt ttatcccgcg tgtggcgcgt
    29701 tgtgtgcagg catcgaaaaa atctccgggc gtaaaccgtt ctatgttggt aaaccgagtc
    29761 cgtggatcat ccgcgcggca ttaaacaaaa tgcaggcgca ttcggaagaa acggtgattg
    29821 tcggcgataa cctgcgtacc gatattctgg cgggcttcca ggcaggtctg gaaacgattc
    29881 tggtgctttc tggtgtttca tcgctcgacg atatcgacag tatgccgttc cgcccaagct
    29941 ggatttaccc gtcggtcgct gaaatcgacg ttatctgaat agcaaccacg tctgcggacg
    30001 tggttggctc tgatgacaaa cgccaaactg cctgatgcgc tacgcttatc aggcctacgc
    30061 agctcctgca atatattgaa ttttcatgct tttgtaggcc ggataaggcg ttcacgccgc
    30121 atccggcatg aacaaattgc actttgtcag caatttggcc cccgtaaaat acaaacattc
    30181 aataaaaccc gctgaaaatt atcgattcat caataaatat atcctcacac cagacctttt
    30241 ttcaccaatc gacaatcacc attacgtttt ttattttttc accgccaaat cgcttgcgca
    30301 cagtgctgct ttgcggcatt tttttaaaca agcaaacaca acaagcaaca aataccagat
    30361 taacggagaa ggttatgtgt tcaatttttg gcgtattcga tatcaaaaca gacgcagttg
    30421 agctgcgtaa gaaagcactc gagctgtcac gcctgatgcg tcatcgtggc ccggactggt
    30481 ccggtattta tgccagcgat aacgccattc tcgctcacga acgtctgtca attgttgacg
    30541 ttaacgcggg ggcgcaacct ctctacaacc aacaaaaaac ccacgtactg gcggtaaacg
    30601 gtgaaatcta caaccaccag gcattgcgcg ctgaatatgg cgatcgttat cagttccaga
    30661 cagggtctga ctgtgaagtg atcctcgcgc tgtatcagga aaaagggccg gaatttctcg
    30721 acgacttgca gggcatgttt gcctttgccc tgtacgacag cgaaaaagat gcctacctga
    30781 ttggtcgcga ccatctgggg atcatcccac tgtatatggg ctatgacgaa cacggtcagc
    30841 tgtatgtggc ctcagaaatg aaatcgctgg tgccagtttg ccgcacgatt aaagagttcc
    30901 cggcggggag ctatttgtgg agccaggacg gcgaaatccg ttcttattat catcgcgact
    30961 ggttcgactt tgatgcagtg aaagataacg tgaccgacaa aaacgagctg cgtcaggctc
    31021 tggaagattc cgttaaaagc catctgatgt ctgatgtgcc ttacggtgtg ctgctttctg
    31081 gtggtctgga ttcctcaatt atttccgcta tcaccaagaa atacgcagcc cgtcgcgtgg
    31141 aagatcagga acgctctgaa gcctggtggc cgcagttaca ctcctttgct gtaggtctgc
    31201 cgggttcacc ggatcttaaa gcagcccagg aagtggcaaa ccatctgggc acggtgcatc
    31261 acgaaattca cttcactgta caggaaggtc tggatgccat ccgcgacgtg atttaccaca
    31321 tcgaaactta tgatgtgacc actattcgcg cttcaacacc gatgtattta atgtcgcgta
    31381 agatcaaggc gatgggcatt aaaatggtgc tgtccggtga aggttctgat gaagtgtttg
    31441 gcggttatct ttacttccat aaagcgccca acgctaaaga actgcatgaa gagacggtgc
    31501 gtaaactgct ggccctgcat atgtatgact gcgcgcgcgc caacaaagcg atgtcagcct
    31561 ggggcgtgga agcacgcgtt ccgttcctcg acaaaaaatt ccttgatgtg gcgatgcgca
    31621 ttaacccgca ggataaaatg tgcggtaacg gcaaaatgga aaaacacatc ctgcgtgaat
    31681 gttttgagtc atacctgccc gcaagcgtgg cctggcggca gaaagagcag ttctccgatg
    31741 gcgtcggtta cagttggatc gacaccctga aagaagtggc ggcgcagcag gtttctaatc
    31801 agcaactgga aactgcccgc ttccgcttcc cgtacaacac gccaacctca aaagaagcgt
    31861 atctgtaccg ggagatcttt gaagaactgt tcccgcttcc gagcgccgct gagtgcgtgc
    31921 ctggcggtcc ttccgtcgcg tgttcttccg ctaaagcgat cgaatgggat gaagcgttca
    31981 agaaaatgga cgatccatct ggtcgtgcgg ttggtgttca ccagtcggca tataagtaag
    32041 aaatgcgaaa cagccccggt gaaatccggg gctgtttcag ttattgaggt gcttgttgat
    32101 tctgatatgc agtaaggaaa tgttccgggt ttgccacatc actgtttgac aactcatcac
    32161 tgtaggccag tatttcatag attaatttcc caccactatt gttgaattcc gaatttcatc
    32221 ctgtacgaca aaagaatggc tgtagggtgg ggaaaaaaca caaagtaaac aataattgac
    32281 gaatatagcg ccacgctgtt cgcaacctaa ccaaatagtc actttcgagc aattttcctt
    32341 gaaaaagagg ttgacgctgc aaggctctat acgcataatg cgccccgcaa cgccgataag
    32401 gtatcgcgaa aaaaaagatg gctacgtagc tcagttggtt agagcacatc actcataatg
    32461 atggggtcac aggttcgaat cccgtcgtag ccaccatctt tttggcggga gtggcgaaat
    32521 tggtagacgc accagattta ggttctggcg ccgcaaggtg tgcgagttca agtctcgcct
    32581 cccgcaccat tcaccagaaa gtgttgtacg gatggggtat cgccaagcgg taaggcaccg
    32641 gtttttgata ccggcattcc ctggttcgaa tccaggtacc ccagccatct tcttcgagta
    32701 agcggttcac cgcccggtta ttggggtatc gccaagcggt aaggcaccgg tttttgatac
    32761 cggcattccc tggttcgaat ccaggtaccc cagccataga agaaacaatc tggctacgta
    32821 gctcagttgg ttagagcaca tcactcataa tgatggggtc acaggttcga atcccgtcgt
    32881 agccaccaaa ttctgaatgt gtcgaatacg ttcggcaaat tcaaaaacca atttgttggg
    32941 gtatcgccaa gcggtaaggc accggattct gattccggca ttccgaggtt cgaaccctcg
    33001 taccccagcc aatttattca agacgcttac atcgtaagtg cacccagttg gggtatcgcc
    33061 aagcggtaag gcaccggatt ctgattccgg cattccgagg ttcgaatcct cgtaccccag
    33121 ccacattaaa aaagctcgct tcggcgagct ttttgctttt ctgcgttcat tcaatgtcga
    33181 atgcgatgtt gacacgtctt atccttcaat gtcggatgcg acgctgccgc gtcttatccg
    33241 acctacggtt ggcacgcatc cggcaatgtt gtaaggctac aaccctaacg catatttcag
    33301 cgcctgacgt ttcaacacgc cagcacgctc tgccgccatt aacccgagat tacgcacaaa
    33361 acgcagcggc ggcagattat tactgaatcc ggcataaaac agatccatac cactttgcat
    33421 aatgaagtta tccaccatgc gccgcatctg gtaacgcttg aggacaggat aactggccca
    33481 cgcttcaccg taactgcggg cattcaccag aacatcaatc agggcatcga catcacgata
    33541 accaagattc accccctgcc ccgccagcgg atggatggta tgcgcggcat cgcccaccag
    33601 cgcaagcccc ggctgcacat actgcaacgc atgtcggcgc gtcagcggaa acgcaccagc
    33661 ggcaagcggt gtaacgtaac ccagacgcga cgggaaatgc ttcgcgattt ccgcctggag
    33721 ttgcgccata ttcatattct gcaactggcg aatacgcgcc ggagagtcat accacaccag
    33781 cgatgcccag ttatcaaaca acggcagaaa cgcacgcggt ccgtccgggg taaattgctg
    33841 ccaggtgctg tcgccgggat cgttctcaca ctgtacgcta atcaacatgc acgactgcgc
    33901 atactgccag gcatgaacgc caattcccgc catctgccgc acctgagaat ttgcgccgtc
    33961 ggcaccaatc accagtttcg cgcggatcgt ttcaccgccc ttcagttcca gctcctgaag
    34021 atcattatct cgatgtaatg caatcagcga gcctggcaca cgtaacgtta ctttcggatg
    34081 cgcttccagc gcctgccaca gcgcctgttg cagtacggtg ttttccacca tatagccaag
    34141 caacggtagc ttaagttcag cggcgtcaaa caccacatgc gccgtttccc actcccacgt
    34201 ttccagtctg cggtaaggat ggcaacgcat agcctgtact gcatcccaga cccctaaccc
    34261 tttaagcaat gataccgatg cggcgctgat cgccgagatc cgcacgtccg gttggctatc
    34321 agcgacaaac ggtgcaggtt ctgcgtgctc gatcaccgtt accgaaaatc cgtgctgtgc
    34381 cagccccagc gccagcgcgc cgccgaccat tcctccgccg acaatggcaa tttccgttgg
    34441 ttgatttgtc atggtcaatc atcctgttag caatatgctt taagtttaca ggatttttac
    34501 ccccaagggc tgataacgct catactggcc acaacggcag caaagcatta cactatgcgc
    34561 cctgcattcc tggctactat ttcgcaagag caagtcgatg accaaaaaac tccatattaa
    34621 aacctggggc tgtcagatga acgagtacga ttcatcgaag atggccgatc tgctggatgc
    34681 cacccacggc tatcaactga ccgacgtggc ggaagaagcg gatgtgctgc tgctgaacac
    34741 ctgctcaatc cgcgagaagg ctcaggaaaa agtcttccat cagttgggtc gctggaaact
    34801 gttaaaagag aagaatccag acctgattat cggcgtcggt ggctgcgtgg catcgcaaga
    34861 aggcgagcac attcgccagc gcgcccacta tgtcgatatt atttttgggc cgcaaacgct
    34921 gcaccgtctg ccggagatga tcaactccgt gcgcggcgac cgcagcccgg ttgtagatat
    34981 cagcttcccg gaaatcgaga agtttgaccg tctaccggaa ccgcgcgccg aagggccgac
    35041 cgcgtttgtc tccatcatgg aaggctgcaa taaatattgc acctactgcg tggtgcctta
    35101 cacccgtggt gaagaggtaa gccgtccgtc tgacgatatt ctgtttgaga ttgcccagct
    35161 tgcggctcag ggcgtgcgtg aagtcaacct gctcggtcag aacgtgaacg cctggcgtgg
    35221 tgaaaactac gacggctcca ccggatcgtt tgccgatctg ctgcgtctgg ttgctgcgat
    35281 cgacgggatc gatcgtattc gctttaccac cagccatccg atcgaattca ccgacgatat
    35341 catcgaagtg tatcgcgaca cgccggagct ggtgagcttc ctgcatctgc cggtacagag
    35401 cggttccgat cgcattctga acctgatggg ccgtactcat acggcactgg agtacaaagc
    35461 gatcatccgt aaactgcgtg cggcgcgtcc agatattcag atcagttctg atttcatcgt
    35521 tggcttccct ggcgaaacca ccgaagactt cgagaaaacg atgaagctga ttgccgacgt
    35581 caatttcgac atgagctaca gctttatctt ctctgcacgt ccgggtacac cagccgccga
    35641 tatggttgat gatgttccgg aagaagagaa gaagcagcgt ctgtatattc tgcaagaacg
    35701 tatcaatcag caagcgatgg catggagccg ccggatgctc ggcaccaccc agcgtattct
    35761 ggtagaaggg acttcgcgta agagcatcat ggagctttcc gggcgtaccg aaaataaccg
    35821 cgtggtcaac ttcgagggca caccggatat gatcggtaaa ttcgtcgatg tagaaattac
    35881 cgacgtctac ccgaactctc tgcgcggtaa agtggtgcgt actgaagatg aaatgggcct
    35941 gcgcgtggca gaaacaccgg aatcggtgat tgcccgtacc cgcaaagaaa acgaccttgg
    36001 cgtgggttat tatcagccgt aattctcagg cccgccgttc cggtgggcct tgttttttct
    36061 ctctttatcc ccatctttat cgcaatgctt gcgccttttt cctgtggcgt gaataatttc
    36121 cttataggcc ggtgaatgtt cagcttccgg cggcatacag ataagaggaa cggtttgaac
    36181 atagacactc gcgaaatcac cctggagcca gcagacaacg cgcgtctgtt gagcctgtgc
    36241 ggcccgtttg atgacaacat caagcagctc gaacgccgtc tcggcatcga gatcaatcgc
    36301 cgcgacaacc actttaaact gaccggccgt ccgatttgcg tcaccgctgc ggcagacatt
    36361 ctgcgtagcc tgtatgtcga tacagccccg atgcgcggtc agattcagga tatcgaaccg
    36421 gaacagatcc accttacgat taaagaagcg cgagtactgg agcaaagtgc ggagagcgtg
    36481 ccggagtacg gcaaagcggt caatatcaaa accaaacgcg gcgtaattaa gccgcgcacg
    36541 ccaaaccagg cgcagtacat cgccaatatt ctcgaccatg acattacctt cggcgttggc
    36601 ccggcgggta cgggtaaaac ctacctggca gtggctgcgg cagttgatgc cctggagcgt
    36661 caggagattc gccgtattct gctgactcgt ccggcggtcg aagccggtga gaaactgggc
    36721 ttcctgcctg gcgatttaag ccagaaagta gacccgtatc tgcgcccact gtacgacgcg
    36781 ctgtttgaaa tgctgggctt tgagaaagtt gagaaactga ttgagcgcaa cgttattgaa
    36841 gtcgcgccgc tggcctatat gcgtggtcgt acgctgaacg acgcgtttat cattctcgat
    36901 gagagccaga acaccaccat cgaacagatg aagatgttcc tgacccgtat cggttttaac
    36961 tcaaaagcgg ttatcaccgg cgacgtcaca cagatcgacc tgccgcgtaa tactaaatca
    37021 ggcttacgtc acgccatcga agtactggcc gatgtcgaag agatcagctt taacttcttc
    37081 cacagcgaag acgtggttcg tcaccctgtg gtggcgcgta tcgttaacgc ctatgaagcc
    37141 tgggaagaag ccgaacaaaa acgaaaagcg gcgctggcgg cagaacgcaa gcgcgaagaa
    37201 caggaacaaa aatgagtcag gtgatcctcg atttacaact ggcatgtgaa gataattccg
    37261 ggttaccgga agagagccag tttcaaacat ggctgaatgc ggtgatcccg cagtttcagg
    37321 aagaatcgga agtgactatt cgcgtggtcg ataccgccga aagccacagt ctgaatctga
    37381 cctatcgcgg taaggataag ccgaccaacg tgctctcctt cccgtttgaa gtgccgcctg
    37441 gcatggaaat gtcgctactg ggcgatctgg ttatctgccg tcaggtggtt gagaaggaag
    37501 ctcaggagca aggcaaacca ctggaggcgc actgggcgca tatggtggtg cacggcagtc
    37561 tgcatttgtt aggttacgat cacatcgaag atgacgaagc agaagaaatg gaagccctcg
    37621 aaacagagat tatgcttgct ctgggctatg aggatccgta cattgccgag aaagaataat
    37681 ttgccaggca tttgactggc agacgtcccc gccgttggtg attaacgacg gcgttttgat
    37741 taactaacat gagaacccat acgacgccat gagcgacgac aattcacaca gtagtgacac
    37801 gataagcaac aagaagggat ttttctccct gttactcagc caacttttcc acggtgaacc
    37861 gaaaaaccgt gacgaactgc tggcgctgat ccgtgattcc gggcagaacg accttatcga
    37921 cgaagatacg cgcgatatgc tcgaaggggt gatggacatc gcagaccaac gcgttcgcga
    37981 catcatgatc ccccgctccc agatgattac cctgaaacgc aaccagacgc tggacgaatg
    38041 ccttgatgtc atcatcgagt ccgcccactc acgtttcccg gtgattagcg aagacaaaga
    38101 tcacattgaa gggattctga tggcgaaaga cttgctgccg tttatgcgca gcgatgctga
    38161 agccttcagc atggacaaag tgttacgtca ggcggttgtc gttcctgaaa gtaagcgcgt
    38221 agaccggatg ctgaaagagt ttcgctctca gcgttaccac atggcgatcg tcattgacga
    38281 attcggtggg gtttccggtc tggtgaccat tgaagacatc ctggaactga ttgttggtga
    38341 gattgaagac gaatatgacg aagaagatga tatcgacttc cgtcagctga gtcgtcatac
    38401 ctggaccgtg cgcgcactgg cttccattga agacttcaac gaagcgttcg gcacccactt
    38461 tagcgatgaa gaagtcgaca ctatcggtgg tctggtgatg caggcgtttg ggcatcttcc
    38521 ggcgcgtggc gaaactatcg acatcgacgg ttaccagttc aaagtggcga tggccgacag
    38581 tcgacgtatt attcaggttc atgtcaaaat cccggatgac tcaccccagc cgaagctgga
    38641 tgaataaaac cgaaactgga tagataacta catggctttt gcctcattaa ttgaacgcca
    38701 gcgcattcgc ctgctgctgg cgttattatt cggtgcctgc ggaacgctgg ccttctctcc
    38761 ttacgacgtc tggcctgcgg cgattatttc gttgatgggg cttcaggcgt tgacctttaa
    38821 ccgccgtcca ctccagtctg ccgctattgg cttttgctgg ggatttggcc tctttggcag
    38881 cggtattaac tgggtctatg tcagcatcgc gacctttggc ggaatgcctg gcccggttaa
    38941 catcttcctg gtggtgctgc tggcggcgta tttgtcgctg tataccggac tgtttgctgg
    39001 cgtgctgtcg cgtctgtggc cgaaaaccac ctggctgcgc gtggcgattg ccgcccctgc
    39061 tctctggcaa gtgaccgagt ttctgcgcgg ttgggtactg acaggcttcc cgtggttaca
    39121 gttcggctat agccagattg atggcccgtt aaaagggctg gcaccgataa tgggcgtgga
    39181 agccattaac ttcctgctga tgatggttag tggcctgctg gcactggcgt tggtcaaacg
    39241 caactggcgt ccgctggtgg tggccgtcgt gctgtttgcc ctacccttcc cgctgcgtta
    39301 catccaatgg tttaccccgc aaccggagaa aaccattcag gtttcgatgg ttcagggcga
    39361 tattccgcaa tcactgaaat gggatggaga tcagcttctt aatacgctga agatttacta
    39421 caacgcaacg gctccgctga tgggcaaatc atcgttgatt atctggccgg agtcggcgat
    39481 aaccgatctg gaaattaatc agcaaccgtt cctcaaagca ctggacggtg agttgcgcga
    39541 taaaggtagc tcgctggtaa ccgggattgt cgacgcgcgt ctcaataagc agaaccgcta
    39601 cgatacctac aacaccatca tcacactggg taaaggtgca ccgtacagct acgaatcagc
    39661 cgatcgctat aacaaaaacc atctggtgcc gtttggcgag tttgtcccgc tggagtcgat
    39721 tctgcgtccg ttagcaccgt tctttgatct gccgatgtcg tcgttcagcc gtgggccata
    39781 tatccagccg ccgctgtcag taaatggtat tgagcttact gcggctattt gctacgagat
    39841 cattctcggc gagcaagtgc gcgataactt ccgcccggat accgactatc tgctgactat
    39901 ctccaacgat gcgtggtttg gtaaatctat tggtccatgg caacacttcc agatggcgcg
    39961 aatgcgtgcg ctggagctgg cgcgcccact gttgcgcagc accaacaacg gcattacggc
    40021 ggtgattggc ccgcagggtg agattcaggc gatgatcccg cagttcaccc gcgaggtgtt
    40081 aaccactaat gtgacaccga ccaccggact cacaccgtat gcacgtaccg gcaactggcc
    40141 actgtgggtg ctgacggcac tgtttggttt tgccgctgtg ttgatgagtc tgcgagcacg
    40201 taaacgttga tgtgcctgat gtatcctgca tgagcaaaac gtactttctc attgagcttt
    40261 ggggcatggt tatcatgccc ctttttctta cggttcaggg atacaagcca cattgccata
    40321 ttggggatga cgaataattg cctgcggatc aagcgagcgc gtcctgtcca tttggatcaa
    40381 cccgttcttc gccatgacaa atatttttct accatccgct gaa
//
LOCUS       DADMJB010000014        39730 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.014, whole genome shotgun sequence.
ACCESSION   DADMJB010000014 DADMJB010000000
VERSION     DADMJB010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 39730)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39730)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39730
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.014"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            7..438
                     /locus_tag="JN078_000702"
     CDS             7..438
                     /locus_tag="JN078_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9039998.1"
                     /translation="MALNLASGEGNFFIRPGGVFYVAGDKVGIIRLDAFKTSKEIQFA
                     VQSGPMLLENGVINPRIHPNVASRKIRNGVGINKQGNAVFLLSQQATNFYDFACYAKA
                     KLNVEQLLYLDGTISHMYMKGGAIPWQRYPFVTMISVERKG"
     gene            521..1423
                     /locus_tag="JN078_000703"
     CDS             521..1423
                     /locus_tag="JN078_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosyl-l-methionine hydroxide
                     adenosyltransferase family protein"
                     /protein_id="HAY9039999.1"
                     /translation="MKKTLATLFLLTCLGSSSAYADNALILQTDFSLKDGAVSAMKGV
                     AFGVDHNLKIFDLTHEIPPYNIWEGAYRLYQTASYWPQGSVFVSVVDPGVGTDRKSVV
                     LKTKSGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTG
                     ARLASGAITFEQVGPELPAKVVELSYQKAKATKGEVKGNIPILDIQYGNVWSNISDEL
                     LNQAEIKLNDTLCVTISEGSQQKYAGKMPYVASFGDVPEGQPMVYLNSLLNVSVALNM
                     DNFAQKHQVASGADWNIDVKKCAK"
     gene            complement(1468..3630)
                     /gene="uvrD"
                     /locus_tag="JN078_000704"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
     CDS             complement(1468..3630)
                     /gene="uvrD"
                     /locus_tag="JN078_000704"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HAY9040000.1"
                     /translation="MDVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIA
                     WLMSVENCLPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHH
                     MDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQ
                     SYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNIL
                     VDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAET
                     IRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISLYCAFNELDEARFVV
                     NRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDAL
                     SYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKAL
                     AGRAASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIEN
                     LEELVTATRQFSYNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTMHSAKGLE
                     FPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKE
                     VYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMGTPMVENDSGYKLGQRVRHAKFG
                     EGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAYARLETV"
     gene            complement(3714..4430)
                     /gene="yigB"
                     /locus_tag="JN078_000705"
     CDS             complement(3714..4430)
                     /gene="yigB"
                     /locus_tag="JN078_000705"
                     /EC_number="3.1.3.104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-(5-phospho-D-ribitylamino)uracil
                     phosphatase YigB"
                     /protein_id="HAY9040001.1"
                     /translation="MRFYRPLGRISALTFDLDDTLYDNRPVILRTEREALTFVQNYHP
                     ALRSFQNEDLQRLRQAVREAEPEIYHDVTRWRFRSIEQAMLDAGLSAEEASAGAHAAM
                     INFAKWRSRIDVPQQTHDTLKQLAKKWPLVAITNGNAQPELFGLGDYFEFVLRAGPHG
                     RSKPFSDMYFLAAEKLNVPIGEILHVGDDLTTDVGGAIRSGMQACWIRPENGDLMQTW
                     DSRLLPHLEISRLASLTSLI"
     gene            complement(4430..5326)
                     /gene="xerC"
                     /locus_tag="JN078_000706"
     CDS             complement(4430..5326)
                     /gene="xerC"
                     /locus_tag="JN078_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HAY9040002.1"
                     /translation="MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG
                     LQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVS
                     APKAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHL
                     DLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISAR
                     NVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYT
                     HLDFQHLASVYDAAHPRAKRGK"
     gene            complement(5323..6030)
                     /locus_tag="JN078_000707"
     CDS             complement(5323..6030)
                     /locus_tag="JN078_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF484 domain-containing protein"
                     /protein_id="HAY9040003.1"
                     /translation="MKQLGEELQETLTELDDRAVVDYLIKNPEFFIRNARAVEAIRVP
                     HPVRGTVSLVEWHMARARNHIHVLEENMALLMEQAIANEGLFYRLLYLQRSLTAASSL
                     DDMLMRFHRWARDLGLAGASLRLFPDRWRLGAPSNHTHLALSRQSFEPLRIQRLGQEQ
                     HYLGPLNGPELLVVLPEAKAVGSVAMSMLGSDADLGVVLFTSRDASHYQQGQGTQLLH
                     EIALMLPELLERWIERV"
     gene            complement(6027..6851)
                     /gene="dapF"
                     /locus_tag="JN078_000708"
     CDS             complement(6027..6851)
                     /gene="dapF"
                     /locus_tag="JN078_000708"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HAY9040004.1"
                     /translation="MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQ
                     LLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANG
                     RMVLTVTDDDLVRVNMGEPNFEPSAVPFRANKAEKTYIMRAAEQTILCGVVSMGNPHC
                     VIQVDDVDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACG
                     SGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL"
     gene            complement(6896..7090)
                     /locus_tag="JN078_000709"
     CDS             complement(6896..7090)
                     /locus_tag="JN078_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004987677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HAY9040005.1"
                     /translation="MKNVFKVLTVLLTLFSLTGCGLKGPLYFPPADKNAPPPTKPVET
                     QTQSTVPDKNDRATGMVHPR"
     gene            7553..7873
                     /gene="cyaY"
                     /locus_tag="JN078_000710"
     CDS             7553..7873
                     /gene="cyaY"
                     /locus_tag="JN078_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000999950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HAY9040006.1"
                     /translation="MNDSEFHRLADQLWLTIEEHLDDWDGDSDIDCEINGGVLTITFE
                     NGSKIIINRQEPLHQVWLATKQGGYHFDLKGDEWICDRSGETFWDLLEQAATQQAGET
                     VSFR"
     gene            complement(7913..10459)
                     /gene="cyaA"
                     /locus_tag="JN078_000711"
     CDS             complement(7913..10459)
                     /gene="cyaA"
                     /locus_tag="JN078_000711"
                     /EC_number="4.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate cyclase"
                     /protein_id="HAY9040007.1"
                     /translation="MYLYIETLKQRLDAINQLRVDRALAAMGPAFQQVYSLLPTLLHY
                     HHPLMPGYLDGNVPKGICLYTPDETQRHYLNELELYRGMSVQDPPKGELPITGVYTMG
                     STSSVGQSCSSDLDIWVCHQSWLDSEERQLLQRKCSLLESWAASLGVEVSFFLIDENR
                     FRHNESGSLGGEDCGSTQHILLLDEFYRTAVRLAGKRILWNMVPCDEEEHYDDYVMTL
                     YAQGVLTPNEWLDLGGLSSLSAEEYFGASLWQLYKSIDSPYKAVLKTLLLEAYSWEYP
                     NPRLLAKDIKQRLHDGEIVSFGLDPYCMMLERVTEYLTAIEDFTRLDLVRRCFYLKVC
                     EKLSRERACVGWRRAVLSQLVSEWGWDEARLAMLDNRANWKIDQVREAHNELLDAMMQ
                     SYRNLIRFARRNNLSVSASPQDIGVLTRKLYAAFEALPGKVTLVNPQISPDLSEPNLT
                     FIYVPPGRANRSGWYLYNRAPNIESIISHQPLEYNRYLNKLVAWAWFNGLLTSRTRLY
                     IKGNGIVDLPKLQEMVADVSHHFPLRLPAPTPKALYSPCEIRHLAIIVNLEYDPTAAF
                     RNQVVHFDFRKLDVFSFGENQNCLVGSVDLLYRNSWNEVRTLHFNGEQSMIEALKTIL
                     GKMHQDAAPPDSVEVFCYSQHLRGLIRTRVQQLVSECIELRLSSTRQETGRFKALRVS
                     GQTWGLFFERLNVSVQKLENAIEFYGAISHNKLHGLSVQVETNHVKLPAVVDGFASEG
                     IIQFFFEETQDENGFNIYILDESNRVEVYHHCEGSKEELVRDVSRFYSSSHDRFTYGS
                     SFINFNLPQFYQIVKVDGREQVIPFRTKSIGNMPPANQDHDTPLLQQYFS"
     gene            10846..11787
                     /gene="hemC"
                     /locus_tag="JN078_000712"
     CDS             10846..11787
                     /gene="hemC"
                     /locus_tag="JN078_000712"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HAY9040008.1"
                     /translation="MLDNVLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTR
                     GDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICERE
                     DPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLD
                     NGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDARTRELLAA
                     LNHHETALRVTAERAMNTRLEGGCQVPIGSYAELIDGEIWLRALVGAPDGSQIIRGER
                     RGAPQDAEQMGISLAEELLNNGAREILAEVYNGDAPA"
     gene            11784..12524
                     /gene="hemD"
                     /locus_tag="JN078_000713"
     CDS             11784..12524
                     /gene="hemD"
                     /locus_tag="JN078_000713"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HAY9040009.1"
                     /translation="MSILVTRPSPAGEELVSRLRTLGQVAWHFPLIEFSPGRQLPQLA
                     DQLAALGESDLLFALSQHAVAFAQSQLHQQDRKWPRLPDYFAIGRTTALALHTVSGQK
                     ILYPQDREISEVLLQLPELQNIAGKRALILRGNGGRELIGDTLTARGAEVTFCECYQR
                     CAIHYDGAEEAMRWQSREVTMVVVTSGEMLQQLWSLIPQWYREHWLLRCRLLVVSERL
                     AKLARELGWQDIKVADNADNDALLRALQ"
     gene            12546..13739
                     /gene="hemX"
                     /locus_tag="JN078_000714"
     CDS             12546..13739
                     /gene="hemX"
                     /locus_tag="JN078_000714"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HAY9040010.1"
                     /translation="MTEQEKTSAVVEETREAVDTTSQPVATEKKSKNNTALILSAVAI
                     AIALAAGVGLYGWGKQQAVNQTATSDALANQLTALQKAQESQKAELEGIIKQQAAQLK
                     QANRQQETLAKQLDEVQQKVATISGSDAKTWLLAQADFLVKLAGRKLWSDQDVTTAAA
                     LLKSADASLADMNDPSLITVRRAITDDIASLSAVSQVDYDGIILKLNQLSNQVDNLRL
                     ADNDSDGSPMDSDGEELSSSISEWRINLQKSWQNFMDNFITIRRRDDTAVPLLAPNQD
                     IYLRENIRSRLLVAAQAVPRHQEETYRQALENVSTWVRAYYDTDDATTKAFLDEVDQL
                     SQQNISMDLPETLQSQAMLEKLMQTRVRNLLAQPAAGTTEAKPAPAPAPAPQGDTPAA
                     APQGE"
     gene            13742..14938
                     /gene="hemY"
                     /locus_tag="JN078_000715"
     CDS             13742..14938
                     /gene="hemY"
                     /locus_tag="JN078_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX biogenesis protein HemY"
                     /protein_id="HAY9040011.1"
                     /translation="MLKVLLLFVLLIAGIVVGPMIAGHQGYVLIQTDNYNIETSVTGL
                     AIILILAMVVLFAIEWLLRRIFRTGAHTRGWFVGRKRRRARKQTEQALLKLAEGDYQQ
                     VEKLMAKNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELAGNDTIPVEITRV
                     RLQLARNENHAARHGVDKLLEVTPRHPEVLRLAEQAYIRTGAWSSLLDIIPSMAKAHV
                     GDEEHRAMLEQQAWIGLMDQARADNGSEGLRNWWKNQSRKTRHQVALQVAMAEHLIEC
                     DDHDTAQQIIIDGLKRQYDDRLLLPIPRLKTNNPEQLEKVLRQQIKNVGDRPLLWSTL
                     GQSLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTL
                     QNNPPQ"
     gene            complement(15862..17097)
                     /locus_tag="JN078_000716"
     CDS             complement(15862..17097)
                     /locus_tag="JN078_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HAY9040012.1"
                     /translation="MLQQVPTRAFHVMAKPSGSDCNLNCDYCFYLEKQSLYREKPVTH
                     MDDDTLEAYVRHYIAASEPQNEVAFTWQGGEPTLLGLDFYRRAVKLQAKYGAGRKISN
                     SFQTNGVLLDDKWCAFLAENHFLVGLSLDGPAEIHNQYRVTKGGRPTHKLVMRALTLL
                     QKHHVDYNVLVCVNRTSAQQPLQVYDFLCDAGVEFIQFIPVVERLADETAASDGLKLH
                     APGDIQGELTEWSVRPDEFGEFLVAIFDHWIKRDVGKIFVMNIEWAFANFVGAPGAVC
                     HHQPTCGRSVIVEHNGDVYACDHYVYPQYRLGNMHQQTIAEMIDSPQQQVFGEDKFKQ
                     LPAQCRSCNVLKACWGGCPKHRFMLDASGKPGLNYLCAGYQRYFRHLPPYLKAMADLL
                     AHGRPASDIMQAHLLVVNK"
     gene            complement(17244..17320)
                     /locus_tag="JN078_000717"
     tRNA            complement(17244..17320)
                     /locus_tag="JN078_000717"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17284..17286),aa:Pro,seq:tgg)
     gene            complement(17363..17449)
                     /locus_tag="JN078_000718"
     tRNA            complement(17363..17449)
                     /locus_tag="JN078_000718"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17413..17415),aa:Leu,seq:cag)
     gene            complement(17470..17545)
                     /locus_tag="JN078_000719"
     tRNA            complement(17470..17545)
                     /locus_tag="JN078_000719"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17510..17512),aa:His,seq:gtg)
     gene            complement(17604..17680)
                     /locus_tag="JN078_000720"
     tRNA            complement(17604..17680)
                     /locus_tag="JN078_000720"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17644..17646),aa:Arg,seq:ccg)
     gene            complement(17783..19168)
                     /locus_tag="JN078_000721"
     CDS             complement(17783..19168)
                     /locus_tag="JN078_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAY9040013.1"
                     /translation="MADNKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPS
                     VLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWMA
                     VGISEITAVGVYVQFWFPEMAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTT
                     IIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVEL
                     IGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNESGSNGSPFVLTFA
                     KIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVA
                     GVAVSIAILLIGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAA
                     IASHPFRSILFPWANYVTMAFLICVLIGMYFNEDTRMSLFVGIIFMLAVTAIYKVFGL
                     NRHGKAHKLEE"
     gene            complement(19359..20099)
                     /gene="rffM"
                     /locus_tag="JN078_000722"
     CDS             complement(19359..20099)
                     /gene="rffM"
                     /locus_tag="JN078_000722"
                     /EC_number="2.4.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     N-acetylmannosaminouronosyltransferase"
                     /protein_id="HAY9040014.1"
                     /translation="MNNNTTAPTYTLRGLQLIGWRDMQHALDYLFADGQLKQGTLVAI
                     NAEKMLTIEDNAEVRELINAAEFKYADGISVVRSVRKKYPQAQVSRVAGADLWEELMA
                     RAGKEGTPVFLVGGKPEVLAQTEAKLRNQWNVNIVGSQDGYFKPEQRQALFERIHASG
                     AQIVTVAMGSPKQEIFMRDCRLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGLEWL
                     YRLLSQPSRIKRQLRLLRYLRWHYTGNL"
     gene            complement(20102..21454)
                     /gene="wzyE"
                     /locus_tag="JN078_000723"
     CDS             complement(20102..21454)
                     /gene="wzyE"
                     /locus_tag="JN078_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen assembly polymerase"
                     /protein_id="HAY9040015.1"
                     /translation="MSLLQFSGLFVVWLLCTLFIATLTWFEFRRVRFNFNVFFSLLFL
                     LTFFFGFPLTSVLVFRFDVGVAPPEILLQALLSAGCFYAVYYVTYKTRLRKRVADVPR
                     RPLFTMNRVETNLTWVILMGIALVSVGIFFMHNGFLLFRLNSYSQIFSSEVSGVALKR
                     FFYFFIPAMLVVYFLRQDSKAWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIG
                     IIRGWISLWMLAAAGVLGIVGMFWLALKRYGMNVSGDEAFYTFLYLTRDTFSPWENLA
                     LLLQNYDNIDFQGLAPIVRDFYVFIPSWLWPGRPSMVLNSANYFTREVLNNHSGLAIS
                     PTLIGSLVVMGGALFIPLGAIVVGLIIKWFDWLYELGNREPNRYKAAILHSFCFGAIF
                     NMIVLAREGLDSFVSRVVFFIVVFGACLMIAKLLYWLFESAGLIHKRTKSSLRTQVEG
                     "
     gene            complement(21451..22530)
                     /gene="rffT"
                     /locus_tag="JN078_000724"
                     /gene_synonym="wecF"
     CDS             complement(21451..22530)
                     /gene="rffT"
                     /locus_tag="JN078_000724"
                     /gene_synonym="wecF"
                     /EC_number="2.4.1.325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDP-N-acetylfucosamine:lipid II
                     N-acetylfucosaminyltransferase"
                     /protein_id="HAY9040016.1"
                     /translation="MTVLIHVLGSDIPHHNRTVLRFFNDALAATSEHAREFMVVGKDD
                     GLSDSCPALSVQFFPGKKSLAEAVIAKAKANRQQRFFFHGQFNPTLWLALLSGGIKPS
                     QFFWHIWGADLYELSSGLRYKLFYPLRRLAQKRVGCVFATRGDLSFFAKTHPKVRGEL
                     LYFPTRMDPSLNTMANDRQREGKMTILVGNSGDRSNDHIAALRAVHQQFGDTVKVVVP
                     MGYPPNNEAYIEEVRQAGLELFSEENLQILSEKLEFDAYLALLRQCDLGYFIFARQQG
                     IGTLCLLIQAGIPCVLNRENPFWQDMTEQHLPVLFTTDDLNEDIVREAQRQLASVDKN
                     TIAFFSPNYLQGWQRVLAIAAGEVA"
     gene            complement(22527..23777)
                     /gene="wzxE"
                     /locus_tag="JN078_000725"
     CDS             complement(22527..23777)
                     /gene="wzxE"
                     /locus_tag="JN078_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid III flippase WzxE"
                     /protein_id="HAY9040017.1"
                     /translation="MSLAKASLWTAASTLVKIGAGLLVGKLLAVSFGPAGLGLAANFR
                     QLITVLGVLAGAGIFNGVTKYVAQYHDNPQQLRRVVGTSSAMVLGFSTLMALVFVLAA
                     APISQGLFGNTDYQGLVRLVALVQMGIAWGNLLLALMKGFRDAAGNALSLIVGSLIGV
                     LAYYVSYRLGGYEGALLGLALIPALVVIPAAIMLIKRGVIPLSYLKPSWDNGLAGQLS
                     KFTLMALITSVTLPVAYIMMRKLLAAQYSWDEVGIWQGVSSISDAYLQFITASFSVYL
                     LPTLSRLTEKRDITREVVKSLKFVLPAVAAASFTVWLLRDFAIWLLLSNKFTAMRDLF
                     AWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLMVFAHWLIPAHGALGAAQ
                     AYMATYIVYFSLCCGVFLLWRRRA"
     gene            complement(23779..24909)
                     /gene="rffA"
                     /locus_tag="JN078_000726"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
     CDS             complement(23779..24909)
                     /gene="rffA"
                     /locus_tag="JN078_000726"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /EC_number="2.6.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxygalactose transaminase"
                     /protein_id="HAY9040018.1"
                     /translation="MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRF
                     GSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRP
                     DTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMST
                     YKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFR
                     GQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGR
                     IELPSIPDGCVQNAHMFYIKLRDIDDRSALINFLKEAEIMAVFHYIPLHGCPAGEHFG
                     EFHGEDRYTTKESERLLRLPLFYNLSPVNQRTVIATLLNYFS"
     gene            complement(24914..25588)
                     /locus_tag="JN078_000727"
     CDS             complement(24914..25588)
                     /locus_tag="JN078_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026256.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-fucosamine acetyltransferase"
                     /protein_id="HAY9040019.1"
                     /translation="MPVRASIEPLTWENAFFGVNSAIVRITSEAPLLTPDALAPWSRV
                     QAKIAASNTGELDALQQLGFSLVEGEVDLALPVNNVSDSGAVVAQETDIPALRQLASA
                     AFAQSRFRAPWYAPDASGRFYAQWIENAVRGTFDHQCLILRAASGDIRGYVSLRELNA
                     TDARIGLLAGRGAGAELMQTALNWAYARGKTTLRVATQMGNTAALKRYIQSGANVEST
                     AYWLYR"
     gene            complement(25566..26447)
                     /gene="rfbA"
                     /locus_tag="JN078_000728"
     CDS             complement(25566..26447)
                     /gene="rfbA"
                     /locus_tag="JN078_000728"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HAY9040020.1"
                     /translation="MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLA
                     GIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLVQAFIIGETFLNGEPS
                     CLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDQERFGVVEFDDNFRAISLEEK
                     PKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRG
                     FAWLDTGTHDSLIEASTFVQTVEKRQGFKIACLEEIAWRNGWLDDEGVKRAASSLAKT
                     GYGQYLLELLRARPRQY"
     gene            complement(26466..27533)
                     /gene="rffG"
                     /locus_tag="JN078_000729"
     CDS             complement(26466..27533)
                     /gene="rffG"
                     /locus_tag="JN078_000729"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HAY9040021.1"
                     /translation="MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLIYAGNLMSL
                     APVAQSDRFAFEKVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNI
                     VGTYTLLEAARAYWNTLTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPY
                     SASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYG
                     NGQQIRDWLYVEDHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPN
                     KPHGVVHYRDLITFVADRPGHDLRYAIDASKIARELGWLPQETFESGMRKTVQWYLAN
                     ESWWKQVQDGSYQGERLGLKG"
     gene            complement(27533..28795)
                     /gene="wecC"
                     /locus_tag="JN078_000730"
     CDS             complement(27533..28795)
                     /gene="wecC"
                     /locus_tag="JN078_000730"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HAY9040022.1"
                     /translation="MSFATISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINR
                     GEIHIVEPDLASVVKTAVEGGFLRASTTPVEADAWLIAVPTPFKGDHEPDMTYVESAA
                     RSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTFPQQVGEQADVNIAYCPER
                     VLPGQVMVELIKNDRVIGGMTPVCSTRASELYKIFLEGECVVTNSRTAEMCKLTENSF
                     RDVNIAFANELSLICADQGINVWELIRLANRHPRVNILQPGPGVGGHCIAVDPWFIVA
                     QNPQQARLIRTAREVNDHKPFWVIDQVKAAVADCLAATDKRASELKIACFGLAFKPNI
                     DDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLTGLCTLAQLDEALATADVLVM
                     LVDHSQFKVINGDNVHQQYVVDAKGVWR"
     gene            complement(28792..29922)
                     /gene="wecB"
                     /locus_tag="JN078_000731"
     CDS             complement(28792..29922)
                     /gene="wecB"
                     /locus_tag="JN078_000731"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312746.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HAY9040023.1"
                     /translation="MKVLTVFGTRPEAIKMAPLVHALAKAPFFEAKVCVTAQHREMLD
                     QVLKLFSIVPDYDLNIMQPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLAT
                     SLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLREN
                     VADSRIFITGNTVIDALLWVRDQVMSSDTLRSELVANYPFIDPNKKMILVTGHRRESF
                     GRGFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPF
                     VWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVTAGTVRLVGTDKQRIVE
                     EVTRLLKDENEYQTMSRAHNPYGDGQACSRILEALKNNRISL"
     gene            complement(29978..31024)
                     /gene="wzzE"
                     /locus_tag="JN078_000732"
     CDS             complement(29978..31024)
                     /gene="wzzE"
                     /locus_tag="JN078_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709589.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECA polysaccharide chain length modulation
                     protein"
                     /protein_id="HAY9040024.1"
                     /translation="MTQPMPGKPAEDAENELDIRGLFRTLWAGKLWIIGMGLAFALIA
                     LAYTFFARQEWSSTAITDRPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYK
                     EFVMQLASWDTRREFWLQTDYYKQRMVGNSKADAALLDEMINNIQFIPGDFTRAVNDS
                     VKLIAETAPDANNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKAQVKRQEEVAKA
                     IYDRRMNSIEQALKIAEQHNISRSATDVPAEELPDSEMFLLGRPMLQARLENLQAVGP
                     AFDLDYDQNRAMLNTLNVGPTLDPRFQTYRYLRTPEEPVKRDSPRRAFLMIMWGIVGG
                     LIGAGVALTRRCSK"
     gene            complement(31036..32139)
                     /gene="wecA"
                     /locus_tag="JN078_000733"
     CDS             complement(31036..32139)
                     /gene="wecA"
                     /locus_tag="JN078_000733"
                     /EC_number="2.7.8.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--undecaprenyl-phosphate
                     N-acetylglucosaminephosphotransferase"
                     /protein_id="HAY9040025.1"
                     /translation="MNLLTVSTDLISIFLFTTLFLFFARKVAKKVGLVDKPNFRKRHQ
                     GLIPLVGGISVYAGICFTFGIVDYYIPHASLYLACAGVLVFIGALDDRFDISVKIRAT
                     IQAAVGIVMMVFGKLYLSSLGYIFGSWEMALGPFGYFLTLFAVWAAINAFNMVDGIDG
                     LLGGLSCVSFAAIGMILWFDGQTSLAIWCFAMIAAILPYIMLNLGILGRRYKVFMGDA
                     GSTLIGFTVIWILLETTQGKTHPISPVTALWIIAIPLMDMVAIMYRRLRKGMSPFSPD
                     RQHIHHLIMRAGFTSRQAFVLITLAAALLASIGVLAEYSHFVPEWVMLVLFLLAFFLY
                     GYCIKRAWKVARFIKRVKRRLRRNRGGSPNLTK"
     gene            complement(32379..33638)
                     /gene="rho"
                     /locus_tag="JN078_000734"
     CDS             complement(32379..33638)
                     /gene="rho"
                     /locus_tag="JN078_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HAY9040026.1"
                     /translation="MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAK
                     SGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR
                     PPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTAR
                     VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE
                     MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT
                     VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEE
                     FKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGE
                     IDAMEFLINKLAMTKTNDDFFEMMKRS"
     gene            complement(33723..33824)
                     /gene="rhoL"
                     /locus_tag="JN078_000735"
     CDS             complement(33723..33824)
                     /gene="rhoL"
                     /locus_tag="JN078_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rho operon leader peptide rhoL"
                     /protein_id="HAY9040027.1"
                     /translation="MRSEQISGSSLNPSCRFSSAYSPVTRQRKDMSR"
     gene            complement(33965..34294)
                     /gene="trxA"
                     /locus_tag="JN078_000736"
     CDS             complement(33965..34294)
                     /gene="trxA"
                     /locus_tag="JN078_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017375425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxA"
                     /protein_id="HAY9040028.1"
                     /translation="MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILD
                     EIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE
                     FLDANLA"
     gene            34425..35690
                     /gene="rhlB"
                     /locus_tag="JN078_000737"
     CDS             34425..35690
                     /gene="rhlB"
                     /locus_tag="JN078_000737"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlB"
                     /protein_id="HAY9040029.1"
                     /translation="MSKTHLTEQKFSDFALHPKVVEVLEKKGFHNCTPIQALALPLTL
                     AGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHA
                     DAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQ
                     VVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEY
                     IEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHL
                     AADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLP
                     DDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYNPDALMTD
                     LPKPLRLTRPRTGNGPRRTGAPRNRRRSG"
     gene            35824..37308
                     /gene="gppA"
                     /locus_tag="JN078_000738"
     CDS             35824..37308
                     /gene="gppA"
                     /locus_tag="JN078_000738"
                     /EC_number="3.6.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanosine-5'-triphosphate,3'-diphosphate
                     diphosphatase"
                     /protein_id="HAY9040030.1"
                     /translation="MGSTSSLYAAIDLGSNSFHMLVVREVAGSIQTLTRIKRKVRLAA
                     GLNSENALSNEAMERGWQCLRLFAERLQDIPPSQIRVVATATLRLAVNAGDFIAKAQE
                     ILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQTTSLFSL
                     SMGCVTWLERYFADRNLGQENFDAAEKAAREVLRPVADELRYHGWKVCVGASGTVQAL
                     QEIMMAQGMDERITLEKLQQLKQRAIHCGRLEELEIDGLTLERALVFPSGLAILIAIF
                     TELNIQCMTLAGGALREGLVYGMLHLAVEQDIRSRTLRNIQRRFMIDIDQAQRVAKVA
                     ANFFDQVEKEWHLEAISRDLLISACQLHEIGLSVDFKQAPQHAAYLVRNLDLPGFTPA
                     QKKLLATLLLNQTNPVDLSSLHQQNAVPPRVAEQLCRLLRLAIIFASRRRDDLVPEMT
                     LQANHELLTLTLPQGWLTQHPLGKEIIAQESQWQSYVHWPLEVH"
     gene            complement(37355..39376)
                     /gene="rep"
                     /locus_tag="JN078_000739"
     CDS             complement(37355..39376)
                     /gene="rep"
                     /locus_tag="JN078_000739"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HAY9040031.1"
                     /translation="MRLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCG
                     YQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMK
                     ANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGER
                     DRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEEVRERWQNKIRYLLVDEYQD
                     TNTSQYELVKLLVGSRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQN
                     YRSSGRILKAANILIANNPHVFEKRLFSELGYGTELKVLSANNEEHEAERVTGELIAH
                     HFVNKTQYKYYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRV
                     LTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGY
                     EALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQL
                     FSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFP
                     YVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRP
                     EPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLKAMMAAKRGK"
BASE COUNT         9865 a        10787 c        10047 g         9031 t
ORIGIN      
        1 cagaaggtgg cgttaaatct cgcttcaggt gaagggaatt tctttatccg tcctggcggc
       61 gtgttttatg ttgcgggaga taaagtcggc atcattcgtc tggatgcctt taaaaccagt
      121 aaagagattc agtttgcggt gcagtcaggg ccaatgttat tagaaaacgg cgtaattaat
      181 ccacgcattc acccgaatgt tgcctcgcgt aaaattcgta acggtgtagg gattaataaa
      241 caagggaacg ccgtgttttt gttgagccag caggcgacaa atttttatga ttttgcctgt
      301 tatgccaaag cgaaactgaa cgttgagcag ttgctttatc ttgatggcac aatttcacat
      361 atgtatatga aaggcggggc aatcccgtgg caacgctatc cttttgtcac catgatttcc
      421 gtcgagcgga aaggttaagc attgtacact cgaggaggcc agacaaactg ggactggcta
      481 cacagctgga aaatcatcag ataaatgaag ggaaacaaaa atgaaaaaaa cgctcgcaac
      541 gttattttta ttaacgtgtc tgggatcatc atccgcctat gcggataacg ctttgatttt
      601 acaaactgat tttagcctga aagatggtgc cgtctcggcg atgaaagggg tcgcattcgg
      661 cgttgaccat aatcttaaaa tctttgattt aacacacgaa attccaccgt ataacatctg
      721 ggaaggcgct tatcgcctgt atcagactgc cagttactgg ccgcaaggtt cggtgtttgt
      781 tagcgtggtc gatccgggcg taggcactga ccgtaaatcg gtagtgctga aaaccaaaag
      841 cggtcaatac ttcgtttcac cagataacgg tacgctcact ttggtggcac aaactctggg
      901 tattgatagc gtccgggaaa tcgacgaaaa agctaaccgc ctgaaaggtt ctgaaaagtc
      961 atataccttc cacggtcgtg acgtgtatgc ctacaccggt gcacgtctgg cttccggggc
     1021 gattacgttc gaacaggtgg ggccagagct tccagcaaaa gttgtcgaac tttcttatca
     1081 gaaagcaaaa gcaacaaaag gtgaagtgaa gggcaatatc ccgattctcg atattcagta
     1141 cggcaacgtc tggagcaata tcagcgacga gttgctgaat caggcagaaa tcaaactcaa
     1201 cgacacgttg tgtgtgacca tttccgaagg ttcccagcaa aaatacgcag ggaaaatgcc
     1261 gtatgtcgca agcttcggcg atgtgccgga aggccagccg atggtgtatc tgaacagctt
     1321 attgaatgtt tccgtggcgc tgaatatgga taatttcgcg cagaaacatc aggttgcgtc
     1381 tggtgctgac tggaatattg atgtgaagaa gtgcgctaag taaggtgctg atgcggaatg
     1441 cggtgtggcg caccgcatcc cgcaacgtca caccgtctcc aaccgggcat aagccgccac
     1501 cagccattta ataccctggc cctggaatgc cacctgcaaa cggctatgtt caccgctgcc
     1561 ttccatattg acgatggtgc cttcaccaaa cttagcgtgg cgtacacgct ggccgagctt
     1621 gtagccgctg tcgttctcga ccatcggcgt acccatccgc tgatggctga ccgggcggct
     1681 taccgtggcg cgcaggcgca cctcttccac acactcttcc ggcagctcgc caataaagcg
     1741 cgacgggcga tggtaaacct ctttgccata cagacggcga gtttccgcgt aggtcagcgt
     1801 cagtttctgc atcgcgcggg ttacgccaac gtaggccaga cggcgttctt cttccagacg
     1861 cccgccttca tccagcgaca tctggcttgg gaacatgccc tcttccatac cgacgataaa
     1921 cacctgcggg aactccagac ctttcgccga gtgcatggtc atcagttgta ccgcatcctg
     1981 ccaggtatcc gcctgccctt cgcctgcttc cagcgccgca tgggatagga acgcctgcag
     2041 cggcattaaa tcttcgtctt cttcgttgta gctgaactgg cgcgttgccg tcaccagttc
     2101 ctctaagttt tcgatacgcg tctgaccttt ttcgcccttc tcctgctcgt acatggtacg
     2161 caggccggag tctttaatta cccggtcagt ctgtacatgc agcggcatat cggcagtttc
     2221 ctgcgctaag gcgtcgatca gttccataaa ccgctgtaag gcgctggcag cacgtccggc
     2281 gagggctttt tcctgcaaca gttcacgaca tgcctgccag agtgttaact ggcgatcgcg
     2341 cgatgtctga cgtaccacgt ccagcgtccg gtcaccaata ccccgcgttg gcgtattcac
     2401 cacacgctca aaggccgcgt cgtcgttacg gttggcaatc aggcgcagat acgagagcgc
     2461 atctttgatt tcctggcgtt cgaagaagcg catcccgccg taaatacggt acggcatact
     2521 cgcctgcaac agtgcttctt ccagcacacg cgactgggcg ttactgcggt agagaatggc
     2581 gcactcggca agcgccccgc cgttgtcctg ccaggttttg atgcggttaa ccacaaaacg
     2641 cgcttcatcg agttcgttaa aagcgcaata gagggaaata ggctcaccgt ccgcgccatc
     2701 ggtccacagt tttttaccca gacgcccgtt attgttttca atcagggcgt tagcggcgct
     2761 cagaatattg ctggtagagc ggtagttttg ctccagacga atagtttcgg caccggggaa
     2821 atcattaagg aaacgctgaa tattctccac ctgcgccccg cgccagccgt agattgactg
     2881 gtcgtcatca ccgacgatca tcactttgcc ggtgtcgccc gccagcaggc ggatccacgc
     2941 gtactgaatg ttgttggtat cctggaattc gtccaccagg atattggtaa aacgttcgcg
     3001 gtagtgttgc aggatatgcg gcttgttaag ccacaactcg tgagcgcgca gcagcagctc
     3061 ggcgaagtcc accaggcccg cgcggtcaca cgcttcctga tacgcctgat acaccttctg
     3121 ccaggtctgc tccaccggat taccgtagct ttgaatatga tgtggacgca ggccttcatc
     3181 tttctggctg ttgatgtacc acattgcctg gcgcggcggc cactgcttct cgtcgaggtt
     3241 catcgccttg attaggcgtt tgagcaggcg tagctggtcc tcgctgtcga ggatctgaaa
     3301 atcctgcggc agattggcgt ccatatggtg cgcacgcagc agacggtgcg ccagcccgtg
     3361 gaaggtgccg acccacatgc cgccctggct ggtgcccatt agctgcccga tacgatgacg
     3421 catctccgcc gccgctttgt tggtaaacgt caccgccata atcgagtatg gcaagcagtt
     3481 ttccacgctc atcagccagg cgatacgatg caccagtacg cgcgtcttac cactgcccgc
     3541 gcccgccagc accagaaggt tgctgcgtgg cgcggccacc gcttcgcgct gtttgtcatt
     3601 aaggctgtcg agcaggtaag aaacgtccat tggcaccgcc gcgtaaaaat aggttgggcg
     3661 gagaagcgca acgccctccg ccaaaaagct gggtatatat acagatttgc tgattatatc
     3721 agcgaggtca gagatgccaa ccgggaaatt tccagatgcg gcagtaaacg gctgtcccag
     3781 gtttgcatca gatcgccatt ttccggtctg atccaacagg cctgcattcc gctgcgaatt
     3841 gccccaccca cgtcagtggt gagatcgtcc ccaacatgta agatctcgcc gatcggcacg
     3901 ttgagttttt ccgcagccag aaagtacata tcgctgaacg gttttgagcg cccgtgcggg
     3961 ccagcgcgca gcacaaactc aaaataatcc cccaaaccaa acagttccgg ctgggcgtta
     4021 ccgttggtga tcgccaccag cggccatttc ttcgccagct gttttaaggt gtcgtgagtt
     4081 tgctgcggga cgtcgattcg gctgcgccat ttggcaaagt tgatcattgc tgcgtgtgcg
     4141 cctgcactgg cttcttcggc actcagcccg gcgtcgagca tcgcttgttc aatcgaacga
     4201 aaacgccagc gcgtcacgtc gtgataaatc tcgggttccg cttcccgtac cgcctggcgc
     4261 aggcgttgca gatcttcatt ctggaagctg cgcagcgccg gatgataatt ttgcacaaag
     4321 gtaagcgcct ctcgctcggt gcgcaaaatc accggacggt tatcgtaaag ggtatcatcc
     4381 aggtcaaagg tgagcgccga gatgcgcccc aaaggccggt aaaaacgcat tatttccccc
     4441 gtttggcgcg tggatgcgcc gcatcgtaca ccgaggcaag gtgttgaaaa tcaagatgag
     4501 tatagatttg cgtggtggag aggttggcat gacccagtag ctcctgcaca ccacgaagat
     4561 cgccgctcga ctccagcata tgcgtagcga acgagtgacg taatttatgt gggtgaacgt
     4621 gattattcag cccttgtttt atgccccatt cggcaaagcg tttctgcaca ttacgcgcgg
     4681 agatacgctt gcccagtttc gacagaaaaa gcgcgtcgtc ttcgctacca aacaggtcgc
     4741 gcaaatcaag ccagtgctca atccacgcca cagcgttgcg accaatcggc aggcggcgct
     4801 ctttgctgcc tttccccatt acccacactt caccagactc caggtcgagg tgtttgatat
     4861 ccagccccac cagctcggaa agacgcagac cagcgccgta catcacttcc agcattgcac
     4921 ggtcgcgtac agcgagggga tcgttgatat caatatccag cagccgattc atatcgtcga
     4981 cgtcgatatt tttcggcaga tgacgcggcg ctttcggtgc cgaaacacct ttcgccgggt
     5041 tagctttgag ttcgttctgg ctgaccagcc agtcaaaaaa gctacgtagc gcagaaagcc
     5101 gtaacgccag acttgctgct cccagccctt tacggcgact gcgtacagca aaattgcgca
     5161 ccatcgtcac atcacattgc tgccagcttt gcaggccgtt ttcgctggca aaattgatga
     5221 tcgcctcaag ctgacgctgg tagttaagca gggttatcgg gctaagctgg cgctccacgc
     5281 tcagataacg taggtagcgt tctacatcgg tgtgtaaatc ggtcatacgc gttcaatcca
     5341 acgctccaga agctccggca acatcagcgc aatttcatga agtaactgcg ttccttgccc
     5401 ttgttgatag tgactggcat cgcgactggt aaacagcacg acacccaaat cagcatcgct
     5461 tcccagcatc gacatcgcca ccgatcccac cgctttcgct tccggtagca ccaccagcag
     5521 ctctggtccg ttaagcggcc caagatagtg ctgttcctgc cccaaacgct gaatacgcag
     5581 cggttcgaaa gactgacggc ttaatgccag atgagtgtgg ttcgacggcg cacctaagcg
     5641 ccagcgatcc ggaaacaggc gcagactcgc acctgccagg ccgagatcgc gcgcccagcg
     5701 gtgaaagcgc atcagcatat cgtcgagact gctggcggcg gtgagactgc gctgcaggta
     5761 gagtaggcga taaaacaggc cttcgttggc gatagcctgt tccatcaaca gcgccatgtt
     5821 ctcttccaga acatgaatat gattacgtgc gcgggccatg tgccactcga ccaacgaaac
     5881 ggtgccgcgt accggatgtg gcacacgtat cgcttctact gcgcgcgcat tacggataaa
     5941 aaactcagga tttttaatca gataatcgac aaccgcccgg tcatcaagct ccgtgagtgt
     6001 ttcctgcagt tcttccccta gttgcttcat agatgaataa atccgtcgta gacatgtacc
     6061 gccgggccag tcatatataa cgggtgaccc ggacctttcc aggcgatatc aagacgaccg
     6121 ccggggagtt ccacgcgtac ttcttcggcc agcaaacctt gctgaatccc tactgcaacc
     6181 gccgcacacg cgccgctgcc gcaggcctgg gtttctcctg ccccacgctc ataaacgcgt
     6241 aaacgaatat gctcgcgctt aaccacttgc ataaaaccga tattggcgcg ctccggaaaa
     6301 cgctcgtggc tttccagaac aggaccaagc gtttctaccg ccgcggtatc gacatcatcg
     6361 acctgaatca cgcaatgcgg atttcccatc gacaccacgc cgcataagat tgtctgctcg
     6421 gcggcgcgca taatataggt cttttccgct ttgttagcgc gaaacggcac agcggaaggt
     6481 tcgaagttgg gttcgcccat atttacgcgg accagatcat catcggtgac ggtcagaacc
     6541 atccgcccgt tggcggtgct gacgcggata tcgcgcttat tggtcagccc tttcaggcgc
     6601 acaaaacggg caaagcagcg cgcaccgttg ccgcactgcg ccacttcact gccatcagca
     6661 ttgaaaatgc gatagtgaaa atccagttca ggatcatacg gcggctcaac caccagcagc
     6721 tggtcaaacc ctacccccag gtgccgatcc gccagccgac gaatcagctc cggtgaaaaa
     6781 aagacattct gcgttaccgc gtcgacgacc ataaaatcgt tgccaaggcc atgcattttc
     6841 gagaactgca tcatttactc caatcacgcg ggtacagaaa ctgactttta gtaattcacc
     6901 tgggatggac catcccagtg gcgcgatcgt ttttatccgg caccgtggat tgcgtttgcg
     6961 tctctaccgg tttggtcggc ggcggtgcat ttttatctgc aggcgggaaa tagagcggac
     7021 ctttcagacc gcagcccgtc aggctgaaga gagtaagtaa tacagtgagt accttaaaca
     7081 cgtttttcat tatggattgc ctgtaaagtt catcgctttc tgctttctat catcgcagga
     7141 gaaggcgtaa aagcaagcgt ttagcgactc tttatgaagt ctgaaaagtg aggaaatgct
     7201 gcgagtataa cgcttactcg tgaggattta tgttctgctg gcagtttcgt gatcggcacc
     7261 tcgcgccagg atggctttat gcactatcgc aatgtggttt gtttgttggc ttttttagtt
     7321 ccgtcagcgt gaggatgctc gctcggtaaa cctgatcata atgtttacca gaaacaggga
     7381 aaggcgtggt gtaactgcgc cctaatgaag agacaaatct ttcgccacac agagacatca
     7441 ttattccggt gacggatgaa tcatgccgga acgcagcagc agaggtgcaa actttgaagc
     7501 cctgacccca tgccgctata ctgccgccat cacttaaaaa caggatacaa caatgaacga
     7561 cagtgaattt catcgcctgg ctgatcaact gtggctgacc attgaagagc atctggacga
     7621 ctgggatggc gacagcgata tcgactgcga aatcaacggc ggcgtgctga ccattacctt
     7681 tgaaaacggc agcaaaatca ttatcaaccg ccaggaaccg ctgcaccagg tatggctggc
     7741 aaccaaacaa ggcggctacc attttgatct gaaaggcgat gagtggattt gcgatcgcag
     7801 cggcgaaacc ttctgggatt tgctggaaca ggcggcgacg cagcaggcgg gtgaaacagt
     7861 cagtttccgc taagattgca tgccggataa gcctcgcttt ccggcacgtt catcacgaaa
     7921 aatattgctg taatagcggc gtatcgtgat cctgattggc aggcggcatg ttaccgatag
     7981 attttgtgcg gaacggaatc acctgttcac gaccatcaac cttcacaatc tgatagaact
     8041 gcggcaggtt gaagttgatg aagcttgagc cgtaggtgaa gcggtcgtgc gatgacgagt
     8101 agaagcgact gacgtcacgc accagttcct ctttgctgcc ttcgcagtgg tgatacacct
     8161 caacccggtt gctttcgtca agaatgtaga tattaaagcc attctcgtct tgcgtttctt
     8221 cgaagaagaa ctggatgatc ccttcactag caaagccgtc caccaccgcc ggtaatttga
     8281 cgtgattggt ttcaacctgc actgacaggc cgtgcagttt gttatgcgaa atagcgccat
     8341 aaaactcgat ggcgttctcc agcttctgta ccgatacatt caggcgttcg aagaacaagc
     8401 cccaggtttg accagaaacg cgcagcgcct tgaaacgccc ggtttcctgg cgggtgctgg
     8461 aaaggcgcag ttcaatacac tcagaaacca gttgctgcac gcgagtacgg attaacccgc
     8521 gcagatgctg gctataacag aagacttcca cgctatctgg cggtgcggcg tcctgatgca
     8581 ttttgccgag aatagttttc agggcttcga tcatcgattg ctcgccgttg aagtgcagcg
     8641 tacgcacttc gttccacgag ttgcggtaca gcaggtcaac gctacctacc aggcaatttt
     8701 gattctcgcc aaagctgaag acatccagct tacggaaatc aaaatgcacc acctgattgc
     8761 ggaacgccgc tgtcgggtca tattccaggt taacgataat cgccagatgg cggatctcac
     8821 acgggctgta gagcgccttc ggtgtcggtg caggtaagcg cagcgggaaa tggtgcgaca
     8881 cgtcggcgac catctcctgc aacttaggca aatcgacaat gccgttacct ttaatataca
     8941 aacgggtgcg cgaggtcagc aggccgttaa accatgccca cgccaccagt ttgttcaggt
     9001 aacggttata ttccagcggc tgatggctga tgatcgactc aatatttggc gcgcggttat
     9061 acagatacca acctgaacgg ttagcacggc ccggcggcac ataaataaag gtcagattcg
     9121 gttccgagag atcgggtgaa atctgcgggt ttaccagcgt cactttacct ggtaatgctt
     9181 caaacgcggc atacagctta cgcgtcagca cgccgatatc ctgcggactg gcggagacgc
     9241 taaggttatt gcgacgcgca aagcggatca gattacggta gctctgcatc atcgcgtcga
     9301 gcaactcgtt gtgcgcctca cgcacctgat caatcttcca gttagcgcgg ttatcgagca
     9361 ttgccagacg agcttcgtcc caaccccact cgctcactaa ctggctcaac actgcgcgac
     9421 gccagcctac gcaggcgcgt tcacggctga gcttttcgca cacttttaaa tagaagcagc
     9481 gacgtactaa atccagacgg gtaaaatctt caatcgccgt caggtattca gtaacacgct
     9541 ccagcatcat gcagtatgga tcgagaccaa acgatacaat ctcaccgtcg tgcaaacgct
     9601 gtttgatatc tttcgccagc agacgtgggt tcgggtattc ccaggaatag gcttccagca
     9661 gcagtgtttt cagtaccgct ttgtatgggg aatcgatact cttgtagagc tgccaaaggc
     9721 tggcaccaaa gtactcttca gcagaaagcg agcttaagcc accgagatcc agccattcat
     9781 ttggcgtcag cacgccctgc gcgtaaagcg tcatcacata gtcgtcgtaa tgctcttctt
     9841 cgtcgcacgg caccatattc cacagaatac gcttaccggc gagacgcacg gcggtacgat
     9901 aaaattcgtc aagcagcagt atatgctggg tggagccaca atcttcgccc cccaagctgc
     9961 cgctttcatt atgacggaag cggttttcat caatcaggaa gaagctgact tccacaccca
    10021 gcgaggcggc ccagctttcc agcagactac atttacgttg tagtaactgg cgctcttcgc
    10081 tatcgagcca ggattgatga cagacccaga tatccaggtc agaggaacaa ctttgcccta
    10141 cggacgaggt gctgcccatg gtgtatacac cagtaattgg aagctcacct ttcggtggat
    10201 cctgtactga cattccacga tacagttcaa gctcgttcag gtagtggcgt tgagtttcat
    10261 caggcgtgta aaggcaaatg cctttgggaa cgttaccatc aaggtaaccc ggcattagcg
    10321 gatggtgata gtgcaacaat gtcggcagta gactgtagac ctgttggaat gcaggcccca
    10381 tagcagcaag cgcgcgatcc acacgcaatt gatttatggc atccagtctc tgtttcagag
    10441 tctcaatata gaggtacaag acgtatcgcc tgatttgcta cccgtcatga ctgtgattcc
    10501 gccaacatca acggtaacac gcggcattcg ggatatttcg tatgtcaaag gtaaccgtta
    10561 ccacttttcg cgcctggttt ttttagtttc acgacgaaaa aatggtctaa aacgtgatca
    10621 atttaacacc ttgctgattg accgtaaaga aagatgcgct acatacaagt gtagcaccgt
    10681 ttattctctg taaattcctt attacgacgg cgtgaaacgc ctgtcaggat ccactgccag
    10741 acctcatttt acggtttgcg caggcgtcta cgtttcacca caacactgac atcactctgg
    10801 caaggatgtt aggatggacc acggatgata atgacggtaa caagcatgtt agacaatgtt
    10861 ttaagaattg ccacacgcca aagcccactt gcactctggc aggcacacta tgtcaaagac
    10921 aagttgatgg cgagccatcc gggcctggtc gttgaactgg taccgatggt gacgcgcggc
    10981 gatgtgattc ttgatacgcc gctggcgaaa gtaggcggaa aaggcttatt tgtaaaagag
    11041 ctggaagtcg cgctcctcga aaatcgcgcc gatatcgccg tacattcaat gaaagatgtg
    11101 ccggttgaat tcccgcaagg tctgggactg gtcactattt gtgagcgtga agatcctcgc
    11161 gatgcctttg tgtccaataa ctatgacagt ctggatgcgt taccagcagg cagtatcgtc
    11221 gggacgtcca gtttacgtcg ccagtgccaa ctggctgaac gccgcccgga tctgattatc
    11281 cgctccctgc gcggcaacgt cggcactcgc ctgagcaaac tagataacgg cgaatacgat
    11341 gccatcattc ttgccgtagc cggactaaaa cgtttaggtc tggagtcccg cattcgcgcc
    11401 gcgttaccac ccgagatttc tcttccagcg gtaggacaag gtgcggtcgg tattgaatgc
    11461 cgccttgatg atgcacgcac tcgcgagctg cttgccgcgc tgaatcacca cgaaactgca
    11521 ctgcgcgtta ccgcagaacg cgccatgaat acccgtctcg aaggcggatg tcaggtgcca
    11581 attggtagct acgccgagct tattgatggt gaaatctggc tgcgtgcgct ggtcggcgcg
    11641 ccggacggtt cgcagattat tcgcggtgaa cgccgcggtg cgccgcaaga tgccgaacaa
    11701 atggggattt cgctggcaga agagctactg aataacggcg cgcgcgagat cctcgctgaa
    11761 gtctataacg gagacgcccc ggcatgagta tcctggtcac ccgcccgtct cccgctggag
    11821 aagagttagt gagccgtctg cgcacactgg ggcaggtggc ctggcatttt ccgctgattg
    11881 agttttctcc gggtcgacaa ttaccgcaac ttgctgatca actggcggcg ctgggggaga
    11941 gcgatctgtt gtttgccctc tcgcaacacg cggttgcttt tgcccaatca cagctgcatc
    12001 agcaagatcg taaatggccc cgactacctg attatttcgc cattggacgc accaccgcac
    12061 tggcgctaca taccgtaagc ggacagaaga ttctctaccc gcaggatcgg gaaatcagcg
    12121 aagtcttgct acaattacct gaattacaaa atattgcggg caaacgtgcg ctgatattac
    12181 gtggcaatgg cggtcgtgag ctaattgggg ataccctgac agcgcgcggt gctgaggtca
    12241 ctttttgtga atgttatcaa cgatgcgcaa tccattacga tggtgcagaa gaagcgatgc
    12301 gctggcaatc ccgcgaggtg acgatggtcg ttgttaccag cggtgaaatg ttgcagcaac
    12361 tctggtcgct gatcccacaa tggtatcgtg agcactggtt actacgctgt cgactattgg
    12421 tcgtcagtga gcgtttggcg aaactcgccc gggaactggg ctggcaagac attaaggtcg
    12481 ccgataacgc tgacaacgat gcgcttttac gggcattaca ataactctca taacaggaag
    12541 ccataatgac ggaacaagaa aaaacctccg ccgtggttga agagaccagg gaggccgtgg
    12601 acaccacgtc acaacctgtc gcaacagaaa aaaagagtaa gaacaatacc gcattgattc
    12661 tcagcgcggt ggctatcgct attgctctgg cggcgggcgt cggtttgtat ggctggggta
    12721 aacaacaggc cgtcaatcag accgccacca gcgatgccct ggctaaccaa ctgacggcat
    12781 tgcaaaaagc ccaggagagc caaaaagccg agctggaagg cattattaag caacaagctg
    12841 cacagcttaa gcaggcgaat cgtcagcaag aaacgctggc aaaacagttg gatgaagtcc
    12901 aacaaaaggt cgccaccatt tccggcagcg atgctaaaac ctggctgctg gctcaggccg
    12961 attttctggt gaaactcgcc ggacggaagc tgtggagcga tcaggacgtc acgaccgctg
    13021 cagcgttgct gaaaagtgca gatgccagcc tggcggatat gaatgacccg agtctgatta
    13081 ccgttcgtcg ggcaattacc gatgatatcg ccagcctttc tgcagtttcg caggtggatt
    13141 atgacggcat catccttaag cttaatcagc tttcaaatca ggtagataac ctgcgtctgg
    13201 ccgataatga cagcgatggt tcgccgatgg attccgatgg tgaagagctt tccagttcca
    13261 tcagcgaatg gcgtatcaat ctgcaaaaaa gctggcagaa ctttatggac aacttcatta
    13321 cgattcgccg tcgtgatgac accgccgtac cgctgttagc gccaaatcag gatatctatc
    13381 tgcgcgaaaa tattcgctct cgcctgctgg tcgcagcaca agctgtaccg cgtcaccagg
    13441 aagagactta tcgccaggcg ctggagaacg tctccacctg ggtacgtgct tactacgata
    13501 ctgatgatgc caccaccaaa gcgttcctcg acgaggtgga ccagttaagc cagcaaaata
    13561 tctcgatgga tcttccggaa accctgcaaa gccaggcgat gctggaaaaa ctgatgcaga
    13621 ctcgcgtgcg taacctgctg gcacaaccgg cagcagggac aacggaagct aaacctgcac
    13681 ctgcacctgc acctgcaccg caaggtgata ctccggcagc cgcgccgcaa ggagaataac
    13741 catgctaaaa gtgttattac tctttgtttt gctgattgcg gggatagtgg ttggcccgat
    13801 gattgccggt catcagggtt atgtgctgat ccagaccgac aactacaata tcgaaaccag
    13861 cgtcacgggc ctggcgatca tattgattct ggcgatggta gtgctgtttg ccattgagtg
    13921 gctactgcgg cggatcttcc gcactggcgc gcacacccgt gggtggtttg tcgggcgtaa
    13981 gcgtcgccgt gcacgtaagc agaccgaaca ggcgctgctg aaactggcgg aaggcgatta
    14041 tcagcaagtt gaaaagctga tggcgaaaaa tgccgatcac gctgaacaac cggtggtgaa
    14101 ctatctactg gctgccgaag ccgcgcaaca acgtggtgat gaagcgcgcg ccaaccaaca
    14161 tctggaacgc gcagcggagc tggccggcaa tgacaccatt ccggtagaaa tcacccgtgt
    14221 acgtctgcaa ctggcccgta atgaaaacca tgctgcacgc cacggcgtgg ataagctgct
    14281 ggaagttacg ccacgccatc cggaagtatt acgtctggcg gaacaggcgt atatccgcac
    14341 aggtgcatgg agttctctgc tggatatcat cccatcaatg gcgaaagccc atgttggtga
    14401 tgaagaacat cgtgcaatgc tggaacaaca ggcatggatt ggcctgatgg atcaggcgcg
    14461 tgccgataac ggtagtgaag gtttgcgtaa ctggtggaaa aaccaaagcc ggaaaacgcg
    14521 tcatcaagta gcgttgcagg tggcaatggc ggaacatctt attgaatgtg acgatcatga
    14581 tactgcccag caaattatca tcgatggcct gaaacgccag tacgacgatc gcctactgct
    14641 gccgattcct cgactgaaaa ccaacaatcc ggaacagctg gaaaaagtgc tgcgccagca
    14701 gatcaaaaac gtcggcgatc gcccgctgtt gtggagcaca ctgggccagt cactgatgaa
    14761 gcacggagaa tggcaggaag catcgctcgc cttccgcgca gcgctgaaac aacgtccgga
    14821 cgcctacgat tacgcatggc ttgccgacgc gctggacaga ctgcacaagc cggaagaagc
    14881 tgcagcgatg cgtcgcgacg gtttgatgtt aacgttgcag aacaacccac cacagtagtt
    14941 ccttctcacc cggaggcaag cacctccggg acctttctga tgcataaaaa aacgcctgct
    15001 cttattacgg agcaggcgtt aaaacaggtc tgtatgacaa caagtgggtg cttcactcaa
    15061 cgttgtgtcc atggtgtctg atgaggcata agcgacatct gtcagtggac gataagcacc
    15121 gtaaacggtg ctgcgtcatt ccggagttta tgaggcacta aggcgaacat aagagatgga
    15181 atgagcatct actcgtttat tatgccacag agaatcggga aataacatcc cttaacactt
    15241 gttatgagat aattctgtaa tcctctttgc ttcctgagta ataacttcct gagtgaatat
    15301 ttaacctgag cttgatccta cacatactta ttatgaatga taaaattcat tcaattaata
    15361 acacatatat taattgccgt taaaactaaa aaaagcatca ataatcaacg cgatataata
    15421 aacctgcctt acatatcaac tgcgccagag gtaggattga aaacgctctc ctgattttcc
    15481 aattcatttt ctggataaat aaataattta tttttgtcac tattatttat gtaatcatcc
    15541 tgtcagggag agggatctca attatcaatg cttaattacg tcatcatttt gatgacatga
    15601 aaccggagca ttttgcatgg aattttcgtt ttcacccaaa cttcttgttg ttgctgtcgc
    15661 cgccgctctt cctctcatgg ccagcgcagc agataccccg tcaactgcca ccgcacgcaa
    15721 aggctttgcc ggatacgatc acccaaacca gtatccacag aacgctgcaa tttattgaat
    15781 ttgcacgatc atgtaggccg gataaggcgt ttacgccgca tccggcaatc aaccgcaggc
    15841 ggccacaaaa tggccgctat tttacttatt caccaccagc aaatgtgcct gcataatgtc
    15901 actggccggg cgaccgtgcg ccagcaaatc agccattgct ttaagatatg gcggtagatg
    15961 gcggaaataa cgctgatacc cggcacacaa ataattcagc cccggtttgc cgctggcatc
    16021 gagcatgaag cggtgtttcg ggcagcctcc ccagcacgct tttaacacgt tacaactgcg
    16081 acactgcgcc ggtaattgct taaatttatc ttcaccaaac acctgctgtt gcggggaatc
    16141 gatcatttct gcaattgttt gctgatgcat attccccagc cgatattgcg gataaacata
    16201 gtgatcgcag gcgtaaacgt cgccgttgtg ctcaacaatc accgagcgcc cacaggttgg
    16261 ctgatgatgg caaaccgcac ccggcgcacc gacaaaattg gcaaacgccc attcgatatt
    16321 catcacgaaa atcttgccga cgtcgcgttt gatccagtgg tcaaaaatcg ccaccagaaa
    16381 ttcaccaaat tcatcggggc gcacagacca ttccgtcagt tccccctgaa tatcaccagg
    16441 cgcatgtagt ttcagtccat cgctggcagc tgtttcatca gccaggcgct cgaccaccgg
    16501 aataaactgg atgaattcga ctcccgcatc gcacaaaaaa tcataaacct gcaacggttg
    16561 ctgcgcgctg gtgcggttga cgcagaccag cacgttatag tcgacatgat gtttttgcag
    16621 cagcgtcagg gcacgcatca ccagcttatg cgttggtctg ccacctttgg tcacgcgata
    16681 ttgattgtgg atctcagccg gaccgtccag cgataaccca acaagaaaat gattttctgc
    16741 cagaaatgca caccatttat catcgagcag cacgccgtta gtctggaagc tgttacttat
    16801 cttcctgcca gcaccgtatt tcgcctgtaa ctttacggca cggcggtaaa aatccagccc
    16861 gagtaacgtt ggttcgccgc cctgccaggt aaaagccact tcgttttgcg gttcgctggc
    16921 agcgatatag tgacggacat acgcttccag cgtgtcatcg tccatatgcg tgactggctt
    16981 ttcgcggtaa agggattgtt tttcgagata aaaacagtag tcacagttca gattacaatc
    17041 ggaaccactc ggtttcgcca tcacatgaaa agcacgcgtt ggaacctgtt gcagcatggt
    17101 cactccttgc ctgaagtcat ccttcaatac gttaagggcg aaatcatacc gtggggcaat
    17161 gagttattac gggcgtttat tgcgaagaga gggtgacgaa atgcacagaa aacaaaaaac
    17221 cccgccgaag cggggttcaa aattggtcgg cgagagagga ttcgaacctc cgacccactg
    17281 gtcccaaacc agttgcgcta ccaagctgcg ctactcgccg aaatactgct ttttgaattt
    17341 ttagttcaat tatttaaagt cgtggtgcga ggggggggac ttgaaccccc acgtccgtaa
    17401 ggacactaac acctgaagct agcgcgtcta ccaattccgc caccttcgca ttgtcacaac
    17461 ttctaataat ggggtggcta atgggattcg aacccacgac aactggaatc acaatccagg
    17521 gctctaccaa ctgagctata gccaccacta caaatcttgt tacgcggtat tactaccacc
    17581 gcagctcaag cgccgggact aaatggcgcg cccgacagga ttcgaacctg agacctctgc
    17641 ctccggaggg cagcgctcta tccagctgag ctacgggcgc ttagcgccgt tgcgggggtg
    17701 gataatacgg acttcccacc cctctgtcta gtcccttttt aaataaattg cgcgtttggt
    17761 tacggtttgt gcgttttgct gcttattcct ccagtttatg cgctttcccg tggcgattaa
    17821 ggccaaaaac tttataaatc gccgtcaccg ccagcataaa gatgatgcca acaaacagcg
    17881 acatacgcgt atcttcatta aagtacatgc cgatcaaaac gcaaatcagg aatgccattg
    17941 ttacgtagtt ggcccacggg aacaggattg agcggaacgg atggctggca atcgccgctt
    18001 tatgtgcacg ccgaaaacgc agctggctta tcaatatcac aaaccatggc accatccccg
    18061 gaagcacgct ggcactgtag acgtagacaa acacacgctg cggattggga atgatgtagt
    18121 tcaggcatga gccaattagc agaatagcaa tagatactgc cacacccgca actggtacgc
    18181 cgtgacggga aactttcgcc atcgccgccg gtaactgacg gtttttcgcc agtgcgtaga
    18241 gcatacgtcc gcaactgtac atgccgctgt tacagccaga gagcgcagcc gtcagcacca
    18301 caaagttgat aatgcccgcc gctgcggtaa taccgatttt ggcaaaagtc agtacgaacg
    18361 ggctgccgtt gctgccactt tcattccacg ggaagatggt gacgataacg aaaatcgcgc
    18421 ctacgtagaa aatcaggatc cgccacagca ctttgcctac ggcactgcgc aacgtcacct
    18481 gcggattctt cgcttcaccg gcagtaatgc caatcagctc cacgccctgg taggacgcca
    18541 ccacaataca cagcgcggtc aggaaccctt tccagccacc cgcaaagaaa ccgccatgct
    18601 ctgtgagatt gctaaaacca atcgactgcc cgccattgcc aaagccaaag aaaatcacgc
    18661 ccaggccaat gacaatcatc acgataatcg tggtgacttt gatcatcgcg aaccagaact
    18721 cgatttcgcc gtacaaccgc accgccgcca gattcgccaa cgccaccagc gccactgcga
    18781 tcaatgcggg tatccactgc gccatctccg ggaaccagaa ctggacataa acgccaacgg
    18841 cggtgatttc tgagatcccc accgccatcc acataaacca ataagaccag gcggtgagat
    18901 aaccaaagaa cgggctcata taacgatgcg cataaacggc gaacgaaccg gtaaccggtt
    18961 cgaggaacaa catttcgccc attgaacgca tgatgaaaaa gacgaatagc ccggcgatga
    19021 tataggccaa caatacggat ggcccggccc atttcaaggt actggcggcc cccataaaca
    19081 ggccgacgcc aatggtgccc cccagggcga tgagttcgat atgtcgagct tccagcccac
    19141 gctgtagctc tggtttgtta tctgccataa atcctcgtgt tgtgtttgca tgctttccgg
    19201 tgttaccggt tatcgttatg ggtacatcga gtgttgcgaa tgttttcgta attcaggaga
    19261 aatggcaaat aaagcattaa aaatttgaat gctttgtgta ataaaaaagc agacaggcga
    19321 cggagtgacc actccgtcgc tttacaaaga gaggaaaatc agaggttgcc ggtgtagtgc
    19381 cagcgtaaat aacgcagcaa acgaagctga cgcttaatgc ggctcggctg cgaaagcagg
    19441 cggtagagcc actccagtcc cagcgtttgc cagattttcg gtgcgcgttt tacgtgaccg
    19501 gtgaaaacat cgtaagtccc gccaacgccc atatacagcg catctggatg caccagacgg
    19561 cagtcgcgca tgaagatctc ctgctttggc gatcccatcg caacggtgac gatttgcgct
    19621 ccgctggcat gaatgcgttc aaacagcgcc tgacgctgct cgggtttaaa ataaccatcc
    19681 tgactgccaa cgatattcac attccactgg ttgcgcagtt tagcttcagt ttgcgccagc
    19741 acttcaggtt taccgcccac aagaaatacc ggcgtccctt ctttgcctgc gcgcgccatc
    19801 agctcttccc agagatcggc accggcaacg cgggaaacct gcgcctgcgg gtacttttta
    19861 cgtactgaac gtacaacgct gatgccatcc gcatatttaa attcggcagc gttaattaac
    19921 tccctgacct cggcgttatc ttcaatggtc agcatttttt cagcattaat ggcaaccagc
    19981 gttccctgct taagctgccc gtcagcaaac agataatcga gggcgtgctg catatcacgc
    20041 caaccaatca actgtaagcc acgcagcgta taggtcggtg ccgtggtgtt gttattcatt
    20101 gttatccttc aacctgcgtc cggagcgatg attttgtacg tttatgaatg agtccggcgc
    20161 tttcaaaaag ccagtacaac agttttgcga tcatcagaca tgcgccgaag accacgataa
    20221 aaaagactac gcgtgagaca aacgaatcca gcccttcacg tgccagcacg atcatattga
    20281 agatcgcccc aaagcagaaa ctgtgcaata tcgcagcctt atagcgatta ggctcgcggt
    20341 tgcccagctc atacagccag tcgaaccatt tgatgatcag accaaccacg atcgccccga
    20401 gcgggatgaa caacgcgccg cccatcacca ccagtgagcc tataagcgta ggcgagatcg
    20461 ccagtccgga gtggttattc agcacttccc tggtaaagta gttggctgag ttcagcacca
    20521 tactcgggcg acccggccac agccaggaag ggataaagac atagaaatcg cggacaattg
    20581 gagccaggcc ctggaagtcg atgttgtcgt agttctgcaa cagcaacgcc agattctccc
    20641 acggcgagaa ggtgtcgcga gtgagataga gaaacgtata gaacgcttca tcgccgctca
    20701 cattcattcc atagcgtttt agcgccagcc agaacatgcc cacaatcccc agcacgcccg
    20761 ccgccgccag catccacaac gaaatccagc cgcgaataat gccaataaac aggaagatag
    20821 cgaatgcgat gatgatattg gcgcgagtgc cgccgacaat catataagtc agcaagccaa
    20881 aggcgaccgt gctgacgagg aaaaacagcc acgctttgct atcctggcgc agaaagtaga
    20941 ccaccagcat cgccgggatg aaaaagtaaa agaagcgttt taacgccacg ccggagactt
    21001 cactggagaa gatctgactg taggagttaa gccggaacag caaaaagccg ttgtgcatga
    21061 agaagatgcc gacgcttacc agcgcgatgc ccatcaggat cacccacgta agattggtct
    21121 ccacgcggtt catggtaaac agcggacggc gcggtacatc agcaacgcgt ttgcgtaggc
    21181 gggttttgta ggtgacatag taaaccgcgt agaagcagcc cgcagaaagc aacgcctgca
    21241 acaagatttc tggcggcgcg acaccaacat caaagcgaaa taccagcacg ctggtcagcg
    21301 ggaagccgaa gaaaaaggtg agcaaaaaca gcaatgaaaa gaagacattg aagttaaagc
    21361 gcacacggcg aaactcaaac caagtcagcg tggcaataaa cagcgtgcag agcagccaga
    21421 ccacaaacag gccactgaat tgcagcagac tcatgcgacc tccccggcgg caatcgccaa
    21481 cacccgctgc cagccttgta gatagttagg gctaaagaag gcaatggtgt ttttatccac
    21541 cgacgccaac tggcgctgcg cttcacgcac aatatcctcg ttgagatcgt cggtagtaaa
    21601 cagcaccggc aaatgctgtt ccgtcatatc ctgccagaac ggattttccc ggttaagcac
    21661 acaaggaatg cccgcctgaa tcagtaagca aagcgtacca atgccctgct ggcgggcaaa
    21721 aataaagtaa ccaagatcgc actgacgaag tagcgccaga taggcgtcaa attccagttt
    21781 ttcgctcaaa atttgcagat tttcttcgct gaataactcc agccccgcct gacgaacttc
    21841 ctcaatgtac gcttcgttat taggcggata tcccatcggc accaccactt ttaccgtatc
    21901 gccaaattgc tgatgaacgg cgcgcaaggc agcaatatgg tcattgctgc ggtcaccgga
    21961 gttccccacc agaatggtca ttttcccttc acgttgccga tcgttcgcca tcgtattgag
    22021 agaagggtcc atccgcgtcg ggaagtacag cagttcgccc cgcacctttg gatgcgtttt
    22081 ggcaaaaaag ctcaaatcac cgcgggtggc aaatacacag ccgactcgct tttgcgccag
    22141 gcgacgtagc gggtaaaaaa gcttatatct caagccactg gaaagctcat acaggtctgc
    22201 cccccagata tgccagaaaa actggctggg cttaatgcca ccactcagca gagccagcca
    22261 cagtgtggga ttgaactgac cgtggaaaaa aaatcgctgc tgacggttag cttttgcttt
    22321 cgcgatgacc gcttccgcca gcgatttttt cccagggaaa aattgcacag aaagcgccgg
    22381 acagctatca cttaagccgt cgtccttgcc aacaaccata aactcgcgcg cgtgctcgct
    22441 cgtcgcggcc agcgcgtcat tgaaaaaccg caaaacggtt cggttatggt gagggatatc
    22501 cgatcccagt acgtgaatca gtacagtcat gcccgcctac gccagagtaa aaacacgcca
    22561 caacaaagag aaaaatagac gatataagtt gccatatatg cctgcgccgc gcccagtgca
    22621 ccatgcgcag ggattagcca gtgggcaaat accatcaata aagtgaactg gctgacttcc
    22681 gccagaatat aaaaccgcag tgacgctttg gcgatcacca gataaccaaa gacataagcg
    22741 cccactttta gcacatcacc cactaactgc caggcaaaga gatcgcgcat agcggtaaat
    22801 ttattcgaca acagcaacca gatagcaaaa tcacgcagca accagacggt aaaactcgcc
    22861 gccgccactg ccggtaagac gaattttagc gatttaacca cttcccgggt gatatcgcgc
    22921 ttttccgtta gccgcgacaa cgtgggcagc aaatatacgc tgaacgatgc cgtaatgaat
    22981 tgcaggtagg catcggaaat actgctcacc ccttgccaga tccccacttc atcccagcta
    23041 tactgcgccg ccagcagttt acgcatcatg atgtaagcaa caggcaaggt caccgacgta
    23101 atcaacgcca tgagcgtaaa tttgctcaac tgccctgcca gaccgttatc ccagctgggt
    23161 ttcagatagc ttaacgggat gacaccacgt ttgatcaaca tgatggcggc aggaattacc
    23221 accagcgcgg gaatcagcgc cagacccagc aacgcccctt cataaccgcc caaacggtaa
    23281 ctgacgtagt acgcgagaac gccaatcaag ctgccgacaa tcagcgataa cgcattacct
    23341 gcggcatcgc gaaagccttt catcagcgcc agtaacaggt tgccccaggc gatccccatt
    23401 tgcaccagcg ccactaaacg caccagcccc tgatagtcgg tattaccaaa caatccctgg
    23461 ctgattggcg cagctgccag cacaaaaacc agcgccatca gcgtagagaa accaagtacc
    23521 atcgctgatg aagtgccgac cacgcggcgc agctgttgcg gattatcatg gtactgggca
    23581 acgtatttgg ttacaccgtt aaagatgcca gccccggcaa gcacgccgag cacggtaatc
    23641 aactggcgga aatttgccgc cagcccaagc cccgccggac caaatgacac cgccagcaac
    23701 ttaccgacca gtaacccggc accaatcttg accagtgtac tggccgccgt ccacaaggac
    23761 gcttttgcca acgacatatc aggagaagta gttcaacaaa gtcgcaatta ccgtacgctg
    23821 attgacgggc gacaggttgt agaacagcgg caggcgcagc aggcgctcgc tctctttggt
    23881 ggtgtagcga tcttcaccgt ggaactcacc aaagtgttcc cccgcagggc aaccgtgcag
    23941 cggaatgtaa tgaaacaccg ccatgatttc cgcttctttc agaaagttaa tcaacgcgct
    24001 ccggtcatca atatcccgca gtttaatgta gaacatatgc gcgttctgca cgcagccatc
    24061 aggaatcgac ggcagctcga tacgcccggc tttcgccaga ggcgctaacg catcgtagta
    24121 attttgccac agagccagac gttgctggtt gatacgatcc gctgcttcca gttgcgccca
    24181 caggtatgca gcttgcagat cggacatcaa atagctggag ccaatatcgc gccaggtata
    24241 tttatcgacc tgaccacgga agaactggct gcggttagtg cccttttcac ggatgatctc
    24301 ggctcgttcg attaacgctt tatcgttaat cagcgtcgcg ccgccttcac cacccgccgt
    24361 gtagtttttg gtttcatgga agctaaagca gccaatatga ccaatggttc ccagtgcacg
    24421 ccctttgtaa gtggacatca cgccctgagc ggcatcttcc accacaaaca aattatgctt
    24481 tttcgccaac gccataatgg tgtccatttc gcaggccaca cccgcgtaat ggaccggcac
    24541 gataacgcgc gttttgtcgg tgatcgctgc ttcaatcaac gtttcgtcga tgttcatggt
    24601 gtccgggcga acatccacaa agacgatttt cgcgccacgc agcacaaagg cattggcggt
    24661 ggagacaaag gtgtagctcg gcatgatcac ttcatcgcca ggctggatat cgagcagcag
    24721 cgccgccatc tccagcgaag cggtgcagga cggcgtcagt aacactttgg cgctgccaaa
    24781 acgttgctcc agccactgct ggcagcgacg ggtaaaaccg ccatcgccac acagtttgcc
    24841 gctacccatt gccgactgca tatagtcgag ttcggttccc accaccggcg gtgcgttaaa
    24901 tggaatcatg tgatcacctg tataaccagt acgcggtgct ttctacattc gcaccacttt
    24961 gtatgtatcg tttaagcgcg gcggtgttgc ccatttgggt cgccacccgc aaagttgttt
    25021 taccgcgagc atacgcccag tttagcgccg tttgcatcag ctcagcacct gcaccgcgtc
    25081 cagccagcag gccaattcgc gcatctgtcg cattgagttc ccgtaaagag acatagccgc
    25141 gaatatcgcc ggacgccgca cgtagaatca gacattgatg atcaaaggtg ccgcgcacgg
    25201 cattttcaat ccactgtgca taaaagcgac cgctggcgtc aggcgcatac cacggcgcac
    25261 gaaaacggct ttgcgcaaat gcggcgctag ctaactgacg taatgcggga atatcggtct
    25321 cttgtgccac gacagcaccg ctatcactga cattgttcac gggtagcgcc aaatcaactt
    25381 caccttctac cagggagaat cccagctgtt gcagggcatc cagttcaccc gtatttgatg
    25441 ccgcaatttt ggcctgcacc cgtgaccacg gcgctaacgc gtctggcgtc aggagcggtg
    25501 cttcagacgt aatgcgcacg atggcgctgt taacaccaaa gaaggcgttt tcccaggtta
    25561 gtggctcaat actggcgcgg acgggcacga agtaactcca gcagatattg gccgtagcca
    25621 gttttcgcta atgaactggc agcacgcttc acaccctcgt catcgagcca gccgttacgc
    25681 caggcgatct cttccaggca ggcaatctta aagccctggc gtttttctac tgtctgcaca
    25741 aaggtactgg cttcaatcag gctgtcgtga gtgccagtgt ccagccaggc aaatccgcgc
    25801 ccgagcagtt caacggtcag gttgcccgcc tcgaggtaca tctggttgat ggaggtaatc
    25861 tccagttcac cacgctccga cggcttcacc tgctttgcgt actccacgac tttactgtcg
    25921 tagaaataaa gcccggtcac cgcccagttt gacttcggct gttttggctt ttcttccagc
    25981 gagatagcgc ggaaattgtc gtcaaactcc accacgccaa agcgttcctg gtccatcacc
    26041 tgatagccaa ataccgtcgc cccttccgtg cgcgccgcaa catgacgcag cttcggactg
    26101 aagccctgac cgaagaagat gttatcgccc agcaccagac aagaaggttc accgttgagg
    26161 aaggtttcac cgatgataaa ggcctgcacc agaccgtccg ggctgggctg ttcggcgtat
    26221 tccagctgga taccgaactc actaccatcg cccagcaggc gctggaaata acctttatct
    26281 tccggcgtag tgatgatgag aatttcgcgg ataccggcca acatcagcac cgacagcgga
    26341 tagtaaatca ttggcttatc gtaaatcggc aacagttgct tcgatacgcc gcgcgtaatc
    26401 ggatgcaatc gggtgccgga accgcccgcc aggataatac ctttcatgtt tgcctccgct
    26461 gaaaattagc ctttcagacc taaacgctcg ccctgatagc tgccgtcctg cacctgcttc
    26521 caccagcttt cattagccag ataccactgc accgttttac gcattccact ttcaaaggtt
    26581 tcctgtggca gccagccaag ttcacgggca attttcgaag catcaatggc ataacgcaga
    26641 tcatgccccg gacggtcagc gacaaaggtg atcaagtcac gatagtgcac cacgccgtgc
    26701 ggcttgttcg gagccagttc ttccagcagc tcgcaaatgg tttccacaac atcgagattc
    26761 ttacgctcgt tgtgaccacc aatattatag gtttcaccga ctttcccggt ggtcgccacg
    26821 caatacagcg cgcgggcgtg atcttccaca tacagccagt cacggatttg ctgcccgttg
    26881 ccatataccg gcagcggttt acccgccagc gcgttgagga tcatcagcgg gatcagtttt
    26941 tccggaaagt ggtaaggacc gtagttattc gagcagttgg tgataagcgt cggcagaccg
    27001 taggtccgca gccaggcgcg caccagatgg tcgctgctgg cttttgacgc ggaataaggg
    27061 ctgctcggcg catacggcgt ggtttcggtg aagaaatcat ccgtcgagtg caggtcacca
    27121 tatacttcgt cggtggagat atgatgaaaa cggaacgctg attttttatc ttccgtcagc
    27181 gtattccagt aagcccgcgc cgcttcaagc aatgtataag tcccgacaat gttggtttca
    27241 ataaacgctg ccgggccgtc aatagaacgg tcaacatggc tttcggctgc cagatgcatg
    27301 acacagtctg gctgatgctc agtgaatacg cgtgccagtt ctgcccgatc gcagatatca
    27361 actttctcaa aggcaaagcg atcgctttgc gcgaccggtg ccagcgacat caggtttccg
    27421 gcgtagatca gcttatcgac cactaccacc gcgtcgctcg tttcgttgat gatataacgc
    27481 accagcgccg agccaataaa cccggcacca cctgttatca gaatttttct catcagcgcc
    27541 agactccttt ggcatcgacg acatactgct gatggacatt gtcgccattg ataactttaa
    27601 actgactatg atcgaccagc atcaccagca cgtctgccgt tgccagcgcc tcgtcaagct
    27661 gcgccagagt acaaagcccg gtcagttttt tcggcaactg gtggatgtta ggctcaacaa
    27721 ccagagtttc gccgctatgc cactgggcga tcagttcagc gatttccatc gccgggcttt
    27781 cgcgcaggtc atcaatattc ggtttaaacg ccagaccaaa gcaggcgatt ttcagttcac
    27841 tggcgcgttt atcggtagcc gccaggcaat cagccaccgc cgctttcacc tgatcgataa
    27901 cccagaacgg tttgtgatcg ttcacttcgc gcgcggtacg gataagccgc gcctgctggg
    27961 ggttctgtgc cacgataaac cacggatcaa cagcaatgca gtgaccgccc acgccagggc
    28021 caggctgaag aatattaacg cgagggtgac gattcgccag gcgaatcagt tcccagacgt
    28081 taatcccctg atcggcacaa atcagcgaca attcattagc aaaagcgata ttcacatcgc
    28141 ggaagctgtt ttcggtgagc ttacacattt ccgccgtccg cgagttagtg acgacacact
    28201 caccttcgag gaaaattttg tacagttcgc tggcgcgggt cgaacaaacc ggcgtcatac
    28261 caccaatcac gcgatcgttt ttaatcagct cgaccataac ctggcccggt aacacgcgtt
    28321 ccgggcagta agcaatgttg acgtccgcct gctcgcccac ctgctgtggg aaagtgagat
    28381 ccggacgcat ctctgctaac cattctgcca tcttctcggt tgaccccacc ggcgaggtgg
    28441 attcaaggat caccagcgcg ccttttttca gcactggcgc aatggagcga gcagccgatt
    28501 caacgtaggt catatctggc tcatgatcgc ctttaaacgg cgtgggtaca gcaatcagcc
    28561 aggcatccgc ttcaactggc gtcgtgctcg ctcgtaaaaa accgccttct acggcagttt
    28621 ttactacgct cgccaaatca ggctcgacga tatggatttc gccacgattg atggtatcaa
    28681 ccgcgtgttg gttgatatcg acaccaatca cctgtttttg ccgtgaggca aacgctgctg
    28741 ctgtaggcag cccgatgtaa cccagtccga taacagaaat ggtcgcaaaa ctcatagtga
    28801 tatccgatta ttttttaacg cttccagaat gcgagagcat gcctgaccat caccatacgg
    28861 gttatgggcg cggctcatag tttgatattc gttttcgtct tttaaaagac gcgtcacttc
    28921 ctcgacaatt cgctgcttat ccgtgcctac cagacgcacc gtacccgccg tcaccgcttc
    28981 cggacgctca gtggtatcgc gcatcaccag caccggtttc cccagcgaag gcgcttcttc
    29041 ctgaatgccg cctgagtcgg tcaaaatcag ccaggcgtgg ttcatcaacc agacaaacgg
    29101 taaatactcc tggggatcga tcagaatgac atttttcaca tgccccagaa tgcgattgac
    29161 cggctctctg acgttcgggt tgagatgcac cggatagaca atctggatgt cctggtgcgt
    29221 ggtggcaatg tctgccaacg cgtggcagat ttcttcaaaa ccacgaccga aactctcacg
    29281 cctgtgaccg gtcaccagaa tcatcttttt attggggtcg ataaacgggt aatttgccac
    29341 cagttctgaa cgcagcgtgt cgctgctcat cacctgatca cgcacccata acagtgcatc
    29401 aatgactgta ttaccagtaa tgaagattcg gctatccgca acgttttcac gcagcaagtt
    29461 ttgccgggaa gtttcggttg gagagaagtg atacatcgcc agatgcccgg tcaatgtacg
    29521 gttagcctct tccggccacg gcgaatagag atcgcccgtg cgtaaaccag cctcaacgtg
    29581 accaacagga atacgctgat aaaacgccgc caggctggtt gccagcgtcg ttgttgtgtc
    29641 gccgtgaacc agcacgacgt ctggtttgaa ctcggcaaga ataggtttta gcccttccag
    29701 aatccgacag gttatctctg tcaggccctg tcctggctgc attatgttga gatcgtagtc
    29761 aggtacaatg gaaaagagtt tcagcacctg atcgagcatc tcccgatgct gcgcagtgac
    29821 gcaaacttta gcctcaaaaa aaggagcttt tgccaacgca tgcaccaacg gagccatctt
    29881 gatggcttcc gggcgcgtac caaatacagt cagtactttc acatcgattc tcttcgaata
    29941 agcggcgagc gcctttgcgc tcgccgcagc agtgttgcta tttcgagcaa cggcgggtta
    30001 atgcgacacc agccccgatc agccccccga caatgcccca cataatcatc aggaaggcac
    30061 gacgtgggct atcgcgtttt accggttctt ccggcgtacg caaatagcga taggtctgaa
    30121 aacgcggatc cagggttgga ccaacattca gggtgtttaa catggcccga ttctgatcat
    30181 agtcgagatc aaaggccgga ccgacggcct gtaaattttc cagtcgagcc tggagcattg
    30241 gacgcccaag caggaacatt tctgaatcag gtaattcctc ggcaggcaca tctgtcgcac
    30301 tgcgcgaaat attatgctgc tcagcaattt tcagcgcctg ctcaatgctg ttcatccggc
    30361 ggtcgtagat ggctttcgcc acctcttcct gacgcttcac ctgagctttc atctggatgg
    30421 tgcgtgccgc ccatgcgcct ttcagctcat cattcagatg gctggctgca cgctggctgg
    30481 caaaagcaac atactgacgt aacaggttat tagcgtcagg cgcggtttcg gcaataagct
    30541 tcacgctgtc attgaccgcg cgggtaaagt ctccggggat aaactggatg ttgttaatca
    30601 tttcatccag caacgccgca tcggctttgc tgttgcccac catccgctgt ttgtaatagt
    30661 cggtttgcag ccagaactct ctgcgggtat cccacgaggc cagttgcata acaaactctt
    30721 tataggcttc gtccatgacc gatggttgat cggcagaagc catgtttgaa cggacatcca
    30781 ggttacgcaa aaattgctgc tgcgagtaat atccccccag catattcacc gttggacgat
    30841 cggtaatcgc cgtcgagctc cactcctgac gagcaaaaaa agtatacgcc agcgcgatta
    30901 acgcaaacgc cagccccatg ccaataatcc atagcttccc agcccacaag gtacgaaaca
    30961 acccacgaat atccagttca ttttcagcgt cttcggccgg tttcccaggc attggttgtg
    31021 tcatcacatc ctcatttatt tggttaaatt ggggctgcca ccacgatttc tacgcagtct
    31081 gcgttttacg cgcttaataa agcgagcaac tttccaggca cgcttaatgc aatatccata
    31141 gaggaagaat gctagcaaaa agagcaccag catgacccac tccgggacaa aatgagaata
    31201 ttctgccagc acgccaatgg aagcgagcag tgctgcggca agggtaatca gcacaaacgc
    31261 ctgacgggaa gtaaacccgg cacgcatgat caaatggtga atatgctgac ggtcaggaga
    31321 gaatgggctc atgcctttac gcaggcgacg gtacataatc gccaccatat ccattagcgg
    31381 aatggcgatt atccacaaag cggtaaccgg gctgatggga tgggttttgc cctgggtcgt
    31441 ttcgagcagg atccagataa cggtaaaacc aatcagcgta ctgcccgcat cacccataaa
    31501 gactttgtag cggcgaccca ggataccaag gttaagcatg atgtatggca ggatggcggc
    31561 gatcatcgca aagcaccaga ttgcgaggct ggtttgcccg tcgaaccaca aaatcatacc
    31621 gattgctgca aacgagacgc aggacaaccc gcccagcaag ccatcaatgc catcaaccat
    31681 gttgaacgca ttaatggccg cccagacggc aaatagcgtc aggaagtaac caaacggtcc
    31741 gagcgccatc tcccaggagc caaagatata acccaggcta ctgagataaa gtttgccgaa
    31801 caccatcata acaatgccaa cagcggcctg tatggtggca cggattttta cgctgatatc
    31861 aaaacggtca tccagcgcgc caatgaaaac aagcacaccg gcacaagcga gatagagaga
    31921 tgcatgcgga atatagtaat cgacaattcc gaacgtgaag caaatccctg cgtaaaccga
    31981 aatcccccca acgagaggta tcaatccctg gtgacgtttg cggaagtttg gtttatccac
    32041 taaaccgact ttttttgcca ccttacgggc aaaaaacaga aacagtgtcg tgaataaaaa
    32101 aatactgatg agatcagtac tcactgtcag taaattcaca atgcatgctc tcagagaaaa
    32161 ttattagcag aagtataacc acgaagacct ttattcagaa gggaaagtcc gttccgaacc
    32221 caccagtcct gtgcaaaaat taaccatttg atatgcaaat tgcataacat gccagcaaat
    32281 tccaggaatt ttcctaacat cgccagcgcg gcattaagat tacagatata aaagcaaaac
    32341 gccacgtaaa cacgtggcgt ttttggcata agacaaattt atgagcgttt catcatttcg
    32401 aagaaatcgt cattggtctt ggtcatggcc agtttattaa tgaggaattc cattgcatcg
    32461 atttcgccca tcgggtgaat gattttgcgc aggatccaca ttttctgcag ttcttcctga
    32521 gtcgtgagca gctcttcttt acgggtaccg gaacggttgt agtcgatagc cgggaagacg
    32581 cgtttttcag cgatcttacg agagaggtgc agttccatgt tgcctgtacc tttaaactct
    32641 tcgtaaataa cttcgtccat tttagaaccg gtatcgataa gcgccgtcgc gataatggtc
    32701 aggctgccgc cctcttccac gttacgcgcc gcaccgaaga agcgtttcgg acgatgaagg
    32761 gcattggcgt ccacaccacc ggtcaacact ttacctgacg ccggaacaac agtgttgtaa
    32821 gcgcgcgcca gacgagtgat ggagtcgagc agaatgataa cgtctttctt gtgctcaacc
    32881 aggcgtttgg ccttctcgat caccatttcc gcaacctgaa cgtggcgaga tgcgggttcg
    32941 tcaaaggtag aagcaacaac ttcacctttt accagacgct gcatctcggt tacttcttcc
    33001 ggacgttcgt cgatcagcag aaccatcagc acacaatccg ggtggttgta agcaatgctc
    33061 tgagcaatgt tctgcagcag catagtttta ccggctttcg gcggtgccac aatcagacca
    33121 cgctgaccac gaccgatagg tgatgccaga tccagtacgc gagcggttaa atcttccgta
    33181 gaaccgttac cacgttccat acgcagacga gagtttgcgt gcagcggggt taagttctca
    33241 aagaggattt tgttgcgggc gttttcaggt ttgtcgaagt taacttcgtt aactttcagc
    33301 agcgcaaaat agcgttcacc ttctttcggc gggcgaatct taccagagat ggtatcacca
    33361 gtgcggaggt tgaaacggcg gatttggcta ggggaaacgt agatgtcatc aggaccggcg
    33421 aggtaggagc tgtctgcgga acggaggaaa ccaaatccat cctgcaatat ctccagtacg
    33481 ccatcaccaa agatatcttc gccactcttt gcgtgctgct tcaggatggc aaaaataatg
    33541 tcctgcttac gcatacgagc caggttttcc agccccatat tttcgccgag agtgatcagc
    33601 tcagaaaccg gcgtattctt taattcggta agattcatag tggtgtgagt tcttaaactt
    33661 ggggtaaatc tcgaacttaa tgttgtgaat ggtatggcag gatcatccat gcctgtttac
    33721 ggtcatcgac tcatgtcttt tcgctgcctg gtcacaggag agtacgcaga actgaaacga
    33781 caagacggat tgagtgacga gccagaaatc tgttcacttc gcatttaaga taaaacggga
    33841 agcgttggaa attacaagat tcaaacttaa taaggtatgt ttaatacgaa gtcaacacta
    33901 agttagcatg actcacgccg ggcgtccagt ttttaacgac ggggcacccg aacatgaaat
    33961 tcccttacgc caggttagcg tcgaggaact ctttcaactg acctttagac agtgcaccca
    34021 ctttggttgc cgccacttca ccgtttttga acagcagcag agtcgggata ccacggatgc
    34081 catatttcgg cgcagtgcca gggttttgat cgatgttcag ttttgcaacg gtcagtttgc
    34141 cctgatattc gtcagcgatt tcatccagaa tcggggcgat cattttgcac ggaccgcacc
    34201 actctgccca gaaatcgacg aggatcgccc cgtccgcttt gagtacatcc gtgtcaaaac
    34261 tgtcgtcagt caggtgaata attttatcgc tcatatataa ctccacagga ataagcctgg
    34321 cgtgttggtt tcgttgttgg tgtaacatta accaactaaa ggttgacttt atttcaccgg
    34381 atacgctttc gtaaagcaat agtaagctga tattctacca cactatgagc aaaacacatt
    34441 taacagaaca gaagttttcc gacttcgccc tgcatccgaa ggttgtagaa gtccttgaaa
    34501 aaaaagggtt tcataactgt acgcccattc aggcactggc ccttccgctg acgctggcgg
    34561 gtcgtgacgt agccgggcag gcgcaaaccg gtaccgggaa aacgatggcg tttcttacgt
    34621 caacgtttca ttatcttctc tctcatcctg cgattgccga tcgcaaggtg aatcaaccac
    34681 gtgccttaat tatggcaccg acgcgtgaac ttgccgtgca gatccatgcc gacgcagaac
    34741 cgctggcgga agctaccggc ctgaagctgg gtctggctta cggtggtgat ggctacgaca
    34801 aacagctgaa agtgctggaa agcggcgttg acattctgat tggcactacg gggcgtttaa
    34861 ttgactacgc caagcagaac cacattaacc tcggtgccat tcaggtggtg gtactggacg
    34921 aagccgatcg catgtacgat ctgggcttta ttaaagatat ccgctggctg ttccgccgta
    34981 tgccgcctgc aaaccagcgc ctcaacatgc tgttctccgc cacgctttcg taccgggtac
    35041 gtgaactggc gttcgagcag atgaacaatg ccgaatatat tgaagtggaa ccggaacaga
    35101 aaacgggcca ccgtattaaa gaagagcttt tctacccttc taacgaagaa aaaatgcgtt
    35161 tgctgcaaac gctgatcgaa gaagagtggc cagacagagc gattattttc gccaatacca
    35221 aacaccgttg tgaagagatc tggggccacc tggcggcaga tggtcatcgt gtcggtttgt
    35281 tgacaggcga tgtcgcgcag aaaaaacgtc tgcgtattct tgatgaattt acccgtggcg
    35341 atctggatat tctggttgcc accgacgttg ccgcgcgtgg tttgcatatt ccggcagtga
    35401 cgcacgtctt taactacgat ttacccgatg actgtgaaga ttacgttcac cgtattggtc
    35461 gtacaggtcg cgcaggcgca agcggtcact ctatcagcct ggcgtgtgaa gagtatgcat
    35521 tgaatttgcc tgctattgag acctatattg gtcactcaat tccggtaagc aaatacaatc
    35581 cggacgcatt gatgaccgat ctgccaaaac cgctgcgcct cacgcgccca cgtacaggca
    35641 atggtccgcg tcgtactggc gctccgcgta atcgtcgtcg ttcaggttaa ataaaatgtc
    35701 atactcaaaa tcattcaaac tgtatcaaga tggcaagaga atgaatcccg atgagcatac
    35761 tgtagtaagt gattcaggtg aaagaatgca gccaacacag agacagattg aaggatgaag
    35821 agtatgggtt ccacctcgtc gctgtatgca gccattgatc tcggttcgaa tagttttcat
    35881 atgctggttg tgcgcgaggt ggctggaagc atccagacgc tgacgcgaat aaaacgcaaa
    35941 gtgcgtctgg ctgctggcct gaatagcgaa aatgccctgt ctaatgaagc aatggagcgc
    36001 ggttggcaat gtctgcgcct gtttgctgaa cgtctgcaag atatccctcc ctcgcaaatt
    36061 cgcgttgtcg ctacggcgac attacgtctt gccgtcaatg cgggtgattt tattgccaaa
    36121 gcgcaggaaa tcctcggttg tccggtacag gtgatcagcg gtgaagagga agcacgtctg
    36181 atttatcagg gcgttgctca cacaactggc ggtgccgatc agcgcctggt ggtggatata
    36241 ggcggtgcca gtactgaact ggtaaccggc acgggtgcac aaaccacctc gttgttcagc
    36301 ctgtcgatgg gctgcgtcac ctggctggaa cgctattttg ccgatcgtaa tctggggcag
    36361 gaaaattttg atgctgcaga aaaagcggca cgcgaagtgt tacgtccggt tgccgatgaa
    36421 ttacggtatc acggctggaa agtgtgcgtt ggtgcttccg gcaccgtgca ggcgttacag
    36481 gaaatcatga tggcacaggg gatggatgaa cgcattaccc tggaaaagtt gcagcaattg
    36541 aaacagcgag ccattcattg cggtcggctg gaggaactgg agattgacgg gctgacgctg
    36601 gaacgtgcgt tagtgttccc gagtggtctg gcgatcctga tcgccatttt taccgaactg
    36661 aatattcagt gtatgaccct ggcgggcggt gcgctgcgtg aaggcctggt ctacggcatg
    36721 ttgcatctgg ccgtcgagca ggatattcgc agccgtacgc tgcgtaatat tcagcgccgc
    36781 tttatgatcg atattgatca ggcgcagcgc gtagccaaag ttgcggctaa cttcttcgat
    36841 caggtggaaa aggaatggca tcttgaagca ataagccgcg atttgctcat cagcgcctgt
    36901 cagcttcatg aaatcggcct gagcgttgac tttaaacaag cgccgcaaca cgctgcttat
    36961 ctggtgcgta atctggatct tcccggtttt acccccgcac agaaaaaatt gctggcgacg
    37021 ctactgctca accagactaa tccggtcgat ctctcatcgc tgcatcagca aaatgccgta
    37081 ccgccgcgcg tcgcagaaca actctgccgt ttactccgcc tggccatcat ttttgccagc
    37141 cgtcgccgtg acgatctcgt gccagagatg acattacagg ctaaccatga actgttgacc
    37201 ttgacgcttc cgcaaggttg gctaacccaa catccgctgg gtaaagagat tattgctcag
    37261 gaaagccagt ggcagagcta tgtccactgg ccgctggaag tgcattaatg agtaagtgcc
    37321 ggatgcgatg ctgacgcatc ttttccggcc ttgattattt ccctcgtttt gccgccatca
    37381 tcgctttcag attcgccaga tggctttgcc ctttctgcat ccgttcttcg gcgctgacca
    37441 ctttgcgctc ctgttcccaa atcagatcat cctgcggcag ctccagcaaa aagcggctcg
    37501 gctccgggcg caccagctcg ccgtactgac ggcgttcttt acacagcgta aaggtcaatt
    37561 ccttctgggc gcgggtaatg ccgacatagg ccagccgccg ctcctcatcg atattatctt
    37621 catcgatgct gctctggtgc ggcaaaaacc cttcttccat accgaccatg tagacataag
    37681 gaaactccag cccttttgac gcgtgcagag tcatcagttg cacctgatcc agctcttctt
    37741 cactctcacc acgctccatc atgtcgcgca aagtaaagcg cgtcaccacc tgggtgagcg
    37801 tcatcggctc atccagttcg ctgccttcca gcatctccgt catccagcta aacagttggt
    37861 tgacgttctt catgcgcatt tcggcggctt tcgggctggg cgatgtttcg tacagccagg
    37921 attcataatc catgccgtgg atcagatcgc gcaccgcggc aatcggctcc cgctccgcca
    37981 gacgctggat ttctgccaac cagtgagtaa agcgggtcaa tgcttcataa ccacgtccgc
    38041 taagcgtctg actcaggccc atatcaaagc tggcggtaaa catgctttta ttgcgcgtca
    38101 tcgcccactc acccagcttt ttcagcgtcg ccgggccaat ctctctcttc ggcgtgttaa
    38161 cgatacgcag aaatgcgctg tcatcgtccg ggttagtcag cacgcgcaga taagccagca
    38221 agtccttgat ttcaggacga gagaaaaacg acgtaccacc agaaattttg tacgggatgc
    38281 ggttttgcat caggaatttt tcaaacactc gcgactgatg gttaccgcga taaagaatag
    38341 cgtaatattt gtactgcgtt ttattgacga agtgatgcgc aatcagttca ccagtgacgc
    38401 gctcggcttc atgttcttcg ttattcgcgc ttaaaacttt aagctctgtg ccgtaaccca
    38461 gttcggagaa cagacgcttc tcaaagacgt gcgggttatt ggcgatcagg atgttcgccg
    38521 ctttcaaaat acgtccggaa gagcggtagt tctgctcaag cttaatcacc ttcagcgccg
    38581 gaaaatcctg actcagcagc accaggtttt gtggacgtgc gccgcgccag gagtagatcg
    38641 actggtcgtc atcgcccacc acggtaaagc gcgcgcggct gcccaccagc agtttcacca
    38701 gttcatactg gctggtgttg gtgtcctgat actcatccac cagcagatag cgaattttgt
    38761 tctgccagcg ctcacggact tcttcattgc gttgcagcag caacgtcggc aataaaatca
    38821 gatcatcgaa gtcgagaaca ttgcacgctt tcaggtgtgc atcatacagc ccataacaat
    38881 gggcaaaaat acggtcccgc tcaccaatcg cactggctgc cgcctgggac ggtgttttga
    38941 gatcgttctt ccagttagag atggtcgaaa tcaactgttg caggagaact ttgtcatctt
    39001 caatcagccc ttcggtcaac tctttgagca acgccagctg atcggtatcg tcaaacagcg
    39061 aaaagttcgc cttcatcccc agcgccgcat actcacgctt gatgatatcc agccccagcg
    39121 tgtggaaggt tgagatcatc agcccacgcg cctctttgcg acccagcgtc tgtccgacac
    39181 gctctttcat ctcgcgcgcc gccttattgg taaaggtcac cgccgcgata tgtcgcgcct
    39241 gataaccgca accgcggatc agatgggcga ttttattggt gatcacacga gttttaccgg
    39301 aacccgcgcc cgccagcacc aggcaggggc cggtaacgaa ttcgacagct tgttgttggc
    39361 cggggtttag acgcataggt gtattgctca atcttcgaac ggggggagga ttgtagcaga
    39421 atcgcatttg aatgtgaccg cgtgtaagcc gctaaccggt tggctgcgga tgtttaaatc
    39481 agagagggaa gaccgaaacc ggagttcatc gtgaatccat tagacttaga aaatatcggg
    39541 tcgtaacgtt gtgttattac tttttcagag tttactaagg agaggtgtac tcgtggcgat
    39601 taatttcagt cctaaggttg gtgaaatact ggaatgcaac tttggtaact atcctgttag
    39661 ccagaatgga cagttcagca ccacgtatta cgatggccgc attcctcctg aaatgataaa
    39721 aaacaggtta
//
LOCUS       DADMJB010000015        39667 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.015, whole genome shotgun sequence.
ACCESSION   DADMJB010000015 DADMJB010000000
VERSION     DADMJB010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 39667)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39667)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39667
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.015"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(13..870)
                     /gene="murI"
                     /locus_tag="JN078_000740"
     CDS             complement(13..870)
                     /gene="murI"
                     /locus_tag="JN078_000740"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312925.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HAY9040032.1"
                     /translation="MATKLQDGNTPCLAATPSEPRPTVLVFDSGVGGLSVYDEIRHLL
                     PDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQERYPLALAVVACNTASTVSLPA
                     LREKFDFPVVGVVPAIKPAARLTANGIVGLLATRGTVKRSYTHELIARFANECQIEML
                     GSAEMVELAEAKLHGEDVSLDALKRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVL
                     PEGTRLVDSGAAIARRTAWLLEHEAPDAKSADANIAFCMAMTPEAEQLLPVLQRYGFE
                     TLEKLAVLG"
     gene            complement(815..2663)
                     /gene="btuB"
                     /locus_tag="JN078_000741"
                     /pseudo
     CDS             complement(815..2663)
                     /gene="btuB"
                     /locus_tag="JN078_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418401.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent vitamin B12 receptor BtuB"
     regulatory      complement(2717..2907)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            3021..4121
                     /gene="trmA"
                     /locus_tag="JN078_000742"
     CDS             3021..4121
                     /gene="trmA"
                     /locus_tag="JN078_000742"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HAY9040033.1"
                     /translation="MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHY
                     RMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLR
                     HKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK
                     IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELY
                     CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG
                     VREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPCILYISCNPETLCKNLE
                     TLSQTHKVERLALFDQFPYTHHMECGVLLTAK"
     gene            complement(4161..4520)
                     /locus_tag="JN078_000743"
     CDS             complement(4161..4520)
                     /locus_tag="JN078_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YijD family membrane protein"
                     /protein_id="HAY9040034.1"
                     /translation="MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLV
                     LTVYCLHQRYLNRTMPVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIM
                     VFWIGAKMRNRKQEVAE"
     gene            complement(4520..5170)
                     /gene="fabR"
                     /locus_tag="JN078_000744"
     CDS             complement(4520..5170)
                     /gene="fabR"
                     /locus_tag="JN078_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002460670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor FabR"
                     /protein_id="HAY9040035.1"
                     /translation="MMGIRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREAGI
                     APTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGN
                     NPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMPRAFTEAQAEAMVT
                     IVFSAGAEALDVGVEQRRQLEERLVLQLRMISKGAYYWYRREQEKTAIIPGNVKDE"
     gene            5491..6891
                     /gene="sthA"
                     /locus_tag="JN078_000745"
     CDS             5491..6891
                     /gene="sthA"
                     /locus_tag="JN078_000745"
                     /EC_number="1.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418397.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Si-specific NAD(P)(+) transhydrogenase"
                     /protein_id="HAY9040036.1"
                     /translation="MPHSYDYDAIVIGSGPGGEGAAMGLVKQGARVAVIERYQNVGGG
                     CTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADILNHADNVINQQTRMRQ
                     GFYERNHCEILQGNARFVDEHTLVLDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTH
                     PRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQE
                     MSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTD
                     SLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALV
                     KGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMN
                     VGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTM
                     AEAYRVAALNGLNRLF"
     gene            complement(6874..7791)
                     /gene="oxyR"
                     /locus_tag="JN078_000746"
     CDS             complement(6874..7791)
                     /gene="oxyR"
                     /locus_tag="JN078_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator OxyR"
                     /protein_id="HAY9040037.1"
                     /translation="MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELG
                     VMLLERTSRKVLFTQAGMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTVG
                     PYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCVILALVKESEAFIEVPL
                     FDEPMLLAIYEDHPWANRECVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTH
                     FRATSLETLRNMVAAGSGITLLPALAVPPERKRDGVVYLPCIKPEPRRTIGLVYRPGS
                     PLRSRYEQLAEAIRARMDGHFDKVLKQAV"
     gene            complement(8058..9431)
                     /gene="argH"
                     /locus_tag="JN078_000747"
     CDS             complement(8058..9431)
                     /gene="argH"
                     /locus_tag="JN078_000747"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HAY9040038.1"
                     /translation="MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKAL
                     VTVGVLTAEEQAQLEEALNVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKK
                     LHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRA
                     QPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGF
                     ASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSG
                     SSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDAFDT
                     WLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAV
                     VEAIRQGKPLEDLPLDELQKFSHVIGEDVYPILSLQSCLDKRAAKGGVSPQQVAQAIA
                     FAQARLG"
     gene            complement(9492..10268)
                     /gene="argB"
                     /locus_tag="JN078_000748"
     CDS             complement(9492..10268)
                     /gene="argB"
                     /locus_tag="JN078_000748"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418394.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HAY9040039.1"
                     /translation="MMNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGG
                     GCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGL
                     FLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVN
                     ADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKV
                     NAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRILA"
     gene            complement(10276..11280)
                     /gene="argC"
                     /locus_tag="JN078_000749"
     CDS             complement(10276..11280)
                     /gene="argC"
                     /locus_tag="JN078_000749"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HAY9040040.1"
                     /translation="MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKL
                     ISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDL
                     SGAFRVNDATFYEKYYGFTHQYPELLEQAAYGLAEWCGNKLKEANLIAVPGCYPTAAQ
                     LALKPLIDADLLDLNQWPAINATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEI
                     ATHLGADVIFTPHLGNFPRGILETITCRLKSGVTQAQVAQVLQQAYAHKPLVRLYDKG
                     VPALKNVVGLPFCDIGFAVQGEHLIIVATEDNLLKGAAAQAVQCANIRFGYAETQSLI
                     "
     gene            11434..12585
                     /gene="argE"
                     /locus_tag="JN078_000750"
     CDS             11434..12585
                     /gene="argE"
                     /locus_tag="JN078_000750"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HAY9040041.1"
                     /translation="MKNKLPPFIEIYRALIATPSISATEEALDQSNADLITLLADWFK
                     DLGFNVEVQPVPGTRNKFNMLASIGQGAGGLLLAGHTDTVPFDDGRWTRDPFTLTEHD
                     GKLYGLGTADMKGFFAFILDALRDIDVTKLKKPLYILATADEETSMAGARYFAETTAL
                     RPDCAIIGEPTSLQPVRAHKGHISNAIRIQGQSGHSSDPARGVNAIELMHDAIGHILQ
                     LRDNLKERYHYEAFTVPYPTLNLGHIHGGDASNRICACCELHMDIRPLPGMTLNELNG
                     LLNDALAPVIERWPGRLTVDELHPPIPGHECPPNHQLVEVVEKLLGAKTEVVNYCTEA
                     PFIQTLCPTLVLGPGSINQAHQPDEYLETRFIKPTRELIIQVIHHFCWH"
     gene            12937..15588
                     /gene="ppc"
                     /locus_tag="JN078_000751"
     CDS             12937..15588
                     /gene="ppc"
                     /locus_tag="JN078_000751"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HAY9040042.1"
                     /translation="MNEQYSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKS
                     SRAGNDANRQELLTTLQNLSNDELLPVARAFSQFLNLANTAEQYHSISPKGEAASNPE
                     VIARTLRKLKNQPELSEDTIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQ
                     LDNKDIADYEHNQLMRRLRQLIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVP
                     NYLRELNEQLEENLGYKLPVEFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKAT
                     DLFLKDIQVLVSELSMVEAPPELLALVGEEGAAEPYRYLMKNLRSRLMATQAWLEARL
                     KGEELPKPEGLLTQNEELWEPLYACYQSLQACGMGIIANGDLLDTLRRVKCFGVPLVR
                     IDIRQESTRHTEALGELTRYLGIGDYKSWSEADKQAFLIRELNSKRPLLPRNWQPSAE
                     TREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLLLKEAGIGFAMPVAPLFETL
                     DDLNNANDVMTQLLNIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIR
                     TCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLP
                     EITVSSLSLYTGAILEANLLPPPEPKESWRRIMDELSVISCDVYRGYVRENKDFVPYL
                     RSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQK
                     VVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKEL
                     RNLQEEDIKVVLAIANDSHLMADLPWIAESIQLRNIYTDPLNVLQAELLHRSRQAEKE
                     GQEPDPRVEQALMVTIAGIAAGMRNTG"
     gene            15771..17504
                     /gene="cptA"
                     /locus_tag="JN078_000752"
     CDS             15771..17504
                     /gene="cptA"
                     /locus_tag="JN078_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709755.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase CptA"
                     /protein_id="HAY9040043.1"
                     /translation="MHSTEVQAKPLFSWKALGWALLYFWFFSTLLQAIIYISGYSGTN
                     GIRDSLLFSSLWLIPVFLFPKRIKIIAAVIGVVLWAASLAALCYYVIYGQEFSQSVLF
                     VMFETNTNEASEYLSQYFSLKIVLIALAYTAVAVLLWTRLRPVYIPKPWRYVVSFALL
                     YGLILHPIAMNTFIKNKPFEKTLDNLASRMEPAAPWQFLTGYYQYRQQLNSLTKLLNE
                     NNALPPLANFKDESGNEPRTLVLVIGESTQRGRMSLYGYPRETTPELDALHKTDPNLT
                     VFNNVVTSRPYTIEILQQALTFANEKNPDLYLTQPSLMNMMKQAGYKTFWITNQQTMT
                     ARNTMLTVFSRQTDKQYYMNQQRTQSAREYDTNVLKPFQDVLNDPAPKKLIIVHLLGT
                     HIKYKYRYPENQGKFDGNTDHVPPGLSAEELESYNDYDNANLYNDHVVASLIKDFKAA
                     DPNGFLVYFSDHGEEVYDTPPHKTQGRNEDNPTRHMYTIPFLLWTSEKWQATHPRDFS
                     LDVDRKYSLAELIHTWSDLAGLSYDGYDPTRSVVNPQFKETTRWIGNPYKKNALIDYD
                     TLPYGDQVGNQ"
     gene            17719..18528
                     /locus_tag="JN078_000753"
     CDS             17719..18528
                     /locus_tag="JN078_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAY9040044.1"
                     /translation="MYHDISYLLSRLINGPVPDLAYQVDFPRLEIVLEGEFVDTGAGA
                     TLVPGDVLYVAAGGWNFPQWKTPTTTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVAR
                     RGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQIQTASRSQALFEAI
                     RDYIDERYASALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKG
                     YDLKVKEVAHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE"
     gene            complement(18515..18856)
                     /locus_tag="JN078_000754"
     CDS             complement(18515..18856)
                     /locus_tag="JN078_000754"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose-like transporter subunit IIB"
                     /protein_id="HAY9040045.1"
                     /translation="MAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVSIETQGALG
                     TENRLADEDIRRADVALLITDIELAGAERFEHCRYVQCSIYAFLREPQRVMSAVRKVL
                     SAPQQTHLILE"
     gene            complement(18858..19736)
                     /locus_tag="JN078_000755"
     CDS             complement(18858..19736)
                     /locus_tag="JN078_000755"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418387.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[formate-C-acetyltransferase]-activating enzyme"
                     /protein_id="HAY9040046.1"
                     /translation="MTSSAGQRISCNVVETRLNDVARIFNIQRYSLNDGEGIRTVVFF
                     KGCPHLCPWCANPESISGKIQTVRREAKCLHCAKCLRDADECPSGAFERIGRDISLDA
                     LEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPAS
                     KLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIPRLPLIPG
                     FTLSRENMQQALDVLIPLNIRQIHLLPFHQYGEPKYRLLGKTWSMKDVAAPSSADVAT
                     MREMAERAGFQVTVGG"
     gene            complement(19702..21999)
                     /locus_tag="JN078_000756"
     CDS             complement(19702..21999)
                     /locus_tag="JN078_000756"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HAY9040047.1"
                     /translation="MTNRISRLKTALFANTREISLERALLYTASHRQTEGEPVILRRA
                     KATAYILEHVEISIRDEELIAGNRTVKPRAGIMSPEMDPYWLLKELDQFPTRPQDRFA
                     ISEEDKRIYREELFPYWEKRSMKDFINGQMTDEVKAATSTQIFSINQTDKGQGHIIID
                     YPRLLNHGLGELVAQMQQHCQQQPENHFYQAALLLLEASQKHILRYAVLAETMAANCT
                     DAQRREELLTIAEISRHNAEHKPQTFWQACQLFWYMNIILQYESNASSLSLGRFDQYM
                     LPFYQASLTQGEDPAFLKELLESLWVKCNDIVLLRSTSSARYFAGFPTGYTALLGGLT
                     ENGRSAVNVLSFLCLDAYQSVQLPQPNLGVRTNALIDTPFLMKTAETIRLGTGIPQIF
                     NDEVVVPAFLNRGVSLEDARDYSVVGCVELSIPGRTYGLHDIAMFNLLKVMEICLHEN
                     EGNAALTYEGLLEQIRAKISHYITLMVEGSNICDIGHRDWAPVPLLSSFISDCLEKGR
                     DITDGGARYNFSGVQGIGIANLSDSLHALKGMVFEQQRLSFDELLSVLKANFATPEGE
                     KVRARLINRFEKYGNDIDEVDNISAELLRHYCKEVEKYQNPRGGYFTPGSYTVSAHVP
                     LGSVVGATPDGRFAGEQLADGGLSPMLGQDEQGPTAVLKSVSKLDNTLLSNGTLLNVK
                     FTPATLEGEAGLRKLADFLRAFTQLKLQHIQFNVVNADTLWEAQQRPQDYAGLVVRVA
                     GYSAFFVELSKEIQDDIIRRTAHQL"
     gene            complement(22050..22370)
                     /locus_tag="JN078_000757"
     CDS             complement(22050..22370)
                     /locus_tag="JN078_000757"
                     /EC_number="2.7.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose-like transporter subunit IIB"
                     /protein_id="HAY9040048.1"
                     /translation="MTKIIAVTACPSGVAHTYMAAEARESAAKAKGWEVKVETQGSIG
                     LENELTAEDVASADMVILTKDIGIKFEERFAGKTIVRVNISDAVKRADAIMSKIEAHL
                     AQTA"
     gene            complement(22385..23464)
                     /locus_tag="JN078_000758"
     CDS             complement(22385..23464)
                     /locus_tag="JN078_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit EIIC"
                     /protein_id="HAY9040049.1"
                     /translation="MNELVQILKNTRQHLMTGVSHMIPFVVSGGILLAVSVMLYGKGA
                     VPDAVADPNLKKLFDIGVAGLTLMVPFLAAYIGYSIAERSALAPCAIGAWVGNSFGAG
                     FFGALIAGIIGGIVVHYLKKIPVHKVLRSVMPIFIIPIVGTLITAGIMMWGLGEPVGA
                     LTNSLTQWLQGMQQGSIVMLAVIMGLMLAFDMGGPVNKVAYAFMLICVAQGVYTVVVI
                     AAVGICIPPLGMGLATLIGRKNFSAEERETGKAALVMGCVGVTEGAIPFAAADPLRVI
                     PSIMVGSVCGAVTAALVGAQCYAGWGGLIVLPVVEGKLGYIAAVAVGAVVTAVCVNVL
                     KSLARKNGSSTDEKEDDLDLDFEIN"
     gene            23773..26274
                     /gene="ptsP"
                     /locus_tag="JN078_000759"
     CDS             23773..26274
                     /gene="ptsP"
                     /locus_tag="JN078_000759"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312903.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HAY9040050.1"
                     /translation="MALIVEFICELPNGVHARPASHVETLCNTFSSQIEWHNLRTDRK
                     GNAKSALALIGTDTLAGDNCQLLISGADEQEAHQRLSQWLRDEFPHCDAPLAEVKSDE
                     LEPLPVSLTNLNPQIIRARTVCSGSAGGILTPISSLDLNALSNLPAAKDVDAEQSALE
                     NGLTLVLKNIEFRLLDSDGATSAILEAHRSLAGDTSLRQHLLTGVSEGLSCAEAIVAS
                     ANHFCEEFARSSSSYLQERALDVRDVCFQLLQQIYGEQRFPAPGKLTQPAICMADELT
                     PSQFLELDKNHLKGLLLKSGGTTSHTVILARSFNIPTLVGVDIDALTPWQHQTIYIDG
                     NAGAIVVEPGEAVARYYQQEARVQDALREQQRVWLTQQARTADGIRIEIAANIAHSVE
                     AQAAFGNGAEGVGLFRTEMLYMDRTSAPGESELYNIFCQALESANGRSIIVRTMDIGG
                     DKPVDYLNIPAEANPFLGYRAVRIYEEYASLFTTQLRSILRASAHGSLKIMIPMISSM
                     EEILWVKEKLAEAKQQLRNEHIPFDEKIQLGIMLEVPSVMFIIDQCCEEIDFFSIGSN
                     DLTQYLLAVDRDNAKVTRHYNSLNPAFLRALDYAVQAVHRQGKWIGLCGELGAKGSVL
                     PLLVGLGLDELSMSAPSIPAAKARMTQLDSRECRKLLNQAMACRTSLEVEHLLAQFRM
                     TQQDAPLVTAECITLESDWRSKEEVLKGMTDNLLLAGRCRYPRKLEADLWAREAVFST
                     GLGFSFAIPHSKSEHIEQSTISVARLQAPVRWGDDEAQFIIMLTLNKHAAGDQHMRIF
                     SRLARRIMHEEFRNALVNAASADAIASLLQHELEL"
     gene            26286..26948
                     /gene="fsa"
                     /locus_tag="JN078_000760"
     CDS             26286..26948
                     /gene="fsa"
                     /locus_tag="JN078_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HAY9040051.1"
                     /translation="MELYLDTANVAEVERLARIFPIAGVTTNPSIIAASKESIWEVLP
                     RLQKAIGDEGILFAQTMSRDAQGMVEEAKRLRDAIPGIVVKIPVTSEGLAAIKMLKKE
                     GITTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQGGDGIRTVQELQALLEMHAPES
                     MVLAASFKTPRQALDCLLAGCESITLPLDVAQQMLNTPAVESAIEKFEHDWNAAFGTT
                     HL"
     gene            26959..28062
                     /gene="gldA"
                     /locus_tag="JN078_000761"
     CDS             26959..28062
                     /gene="gldA"
                     /locus_tag="JN078_000761"
                     /EC_number="1.1.1.6"
                     /EC_number="1.1.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional L-1,2-propanediol
                     dehydrogenase/glycerol dehydrogenase"
                     /protein_id="HAY9040052.1"
                     /translation="MDRIIQSPGKYIQGADVINRLGEYLKPLAERWLVVGDKFVLGFA
                     QSTVEKSFKDAGLVVEIAPFGGECSQNEIDRLRGIAETAQCGAILGIGGGKTLDTAKA
                     LAHFMGVPVAIAPTIASTDAPCSALSVIYTDEGEFDRYLLLPNNPNMVIVDTKIVAGA
                     PARLLAAGIGDALATWFEARACSRSGATTMAGGKCTQAALALAELCYNTLLEEGEKAM
                     LAAEQHVVTPALERVIEANTYLSGVGFESGGLAAAHAVHNGLTAIPDAHHYYHGEKVA
                     FGTLTQLVLENAPVEEIETVAAFSHAVGLPITLAQLDIKEDVPAKMRIVAEAACAEGE
                     TIHNMPGGATPDQVYATLLVADQYGQRFLQEWE"
     gene            28336..28953
                     /locus_tag="JN078_000762"
     CDS             28336..28953
                     /locus_tag="JN078_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1287 domain-containing protein"
                     /protein_id="HAY9040053.1"
                     /translation="MKASLALLSLLTAFTSHSLKSPAVPPTVVQIQANTNLAIADGAR
                     QQIGNTLFYDPAYVRLTYPGGDVPQERGVCSDVVIRALRSQKVDLQKLVHEDMAKNFA
                     EYPQKWKLKRPDSNIDHRRVPNLETWFSRHNKTRPISKNAGDYQAGDIVSWRLDNGLA
                     HIGVVSDGFARDGTPLVIHNIGAGAQEEDVLFSWRMVGHYRYFVK"
     gene            complement(28980..29918)
                     /gene="yijE"
                     /locus_tag="JN078_000763"
     CDS             complement(28980..29918)
                     /gene="yijE"
                     /locus_tag="JN078_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine transporter YijE"
                     /protein_id="HAY9040054.1"
                     /translation="MSTGKLHTGSLMSAAGKSNPLAISGLVVLTLIWSYSWIFMKQVT
                     SYIGAFDFTALRCIFGALVLFIVLLLRGRGMHPTPFKYTLAIALLQTCGMVGLAQWAL
                     VSGGAGKVAILSYTMPFWVVIFAALFLGERLRRGQYFAILIAAFGLFLVLQPWQLDFS
                     SMKSAMLAILSGVSWGASAIVAKRLYTRHPRVDLLSLTSWQMLYAALVMSVVALLVPQ
                     REIDWQPTVFWALAYSAILATALAWSLWLFVLKNLPASIASLSTLAVPVCGVLFSWWL
                     LGENPGAVEGSGIVLIVLALALVSRKKKEAVSVKSI"
     gene            complement(29979..32159)
                     /gene="katG"
                     /locus_tag="JN078_000764"
     CDS             complement(29979..32159)
                     /gene="katG"
                     /locus_tag="JN078_000764"
                     /EC_number="1.11.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase/peroxidase HPI"
                     /protein_id="HAY9040055.1"
                     /translation="MSTSDDIHNTTATGKCPFHQGGHDQSAGAGTTTRDWWPNQLRVD
                     LLNQHSNRSNPLGEDFDYRKEFSKLDYYGLKKDLKALLTESQPWWPADWGSYAGLFIR
                     MAWHGAGTYRSIDGRGGAGRGQQRFAPLNSWPDNVSLDKARRLLWPIKQKYGQKISWA
                     DLFILAGNVALENSGFRTFGFGAGREDVWEPDLDVNWGDEKAWLTHRHPEALAKAPLG
                     ATEMGLIYVNPEGPDHSGEPLSAAAAIRATFGNMGMNDEETVALIAGGHTLGKTHGAG
                     PTSNVGPDPEAAPIEEQGLGWASTYGSGVGADAITSGLEVVWTQTPTQWSNYFFENLF
                     KYEWVQTRSPAGAIQFEAVDAPEIIPDPFDPSKKRKPTMLVTDLTLRFDPEFEKISRR
                     FLNDPQAFNEAFARAWFKLTHRDMGPKSRYIGPEVPKEDLIWQDPLPQPIYNPTEQDI
                     IDLKFAIADSGLSVSELVSVAWASASTFRGGDKRGGANGARLALMPQRDWDVNAAAVR
                     ALPVLEKIQKESGKASLADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDI
                     EMFELLEPIADGFRNYRARLDVSTTESLLIDKAQQLTLTAPEMTALVGGMRVLGANFD
                     SSKNGVFTDRVGVLSNDFFVNLLDMRYEWKATDESKELFEGRDRETGEVKYTASRADL
                     VFGSNSVLRAVAEVYASSDAHEKFVKDFVAAWVKVMNLDRFDLL"
     gene            complement(32488..33378)
                     /gene="metF"
                     /locus_tag="JN078_000765"
     CDS             complement(32488..33378)
                     /gene="metF"
                     /locus_tag="JN078_000765"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HAY9040056.1"
                     /translation="MSFFHASQRDALNQRLAEVQGQINVSFEFFPPRTSEMEQTLWNS
                     IDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTI
                     ARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYPEVHPEAK
                     SAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFK
                     QAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGANIAMDMVKILSREGVKDFHFYT
                     LNRAEMSYAICHTLGVRPGL"
     gene            complement(33727..36159)
                     /locus_tag="JN078_000766"
     CDS             complement(33727..36159)
                     /locus_tag="JN078_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000110794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase II"
                     /protein_id="HAY9040057.1"
                     /translation="MSVIAQAGAKGRQLHKFGGSSLADVKCYLRVAGIMAEYSQPDDM
                     MVVSAAGSTTNQLINWLKLSQTDRLSAHQVQQTLRRYQCDLISGLLPAEEADSLISAF
                     VSDLERLAALLDSGINDAVYAEVVGHGEVWSARLMSAVLNQQGLPAAWLDAREFLRAE
                     RAAQPQVDEGLSYPLLQQLLVQHPGKRLVVTGFISRNNAGETVLLGRNGSDYSATQIG
                     ALAGVSRVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPV
                     SGSEIDLQLRCSYTPDQGSTRIERVLASGTGARIVTSHDDVCLIEFQVPASQDFKLAH
                     KEIDQILKRAQVRPLAVGVHNDRQLLQFCYTSEVADSALKILDEAGLPGELRLRQGLA
                     LVAMVGAGVTRNPLHCHRFWQQLKGQPVEFTWQSDDGISLVAVLRTGPTESLIQGLHQ
                     SVFRAEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLAGVVDSRRSLLSYD
                     GLDASRALAFFNDEAVEQDEESLFLWMRAHPYDDLVVLDVTASQQLADQYLDFASHGF
                     HVISANKLAGASDSNKYRQIHDAFEKTGRHWLYNATVGAGLPINHTVRDLIDSGDTIL
                     SISGIFSGTLSWLFLQFDGSVPFTELVDQAWQQGLTEPDPRDDLSGKDVMRKLVILAR
                     EAGYNIEPDQVRVESLVPAHCEGGSIDHFFENGDELNEQMVQRLEAAREMGLVLRYVA
                     RFDANGKARVGVEAVREDHPLASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGA
                     IQSDINRLAQLL"
     gene            complement(36162..37322)
                     /gene="metB"
                     /locus_tag="JN078_000767"
     CDS             complement(36162..37322)
                     /gene="metB"
                     /locus_tag="JN078_000767"
                     /EC_number="2.5.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine gamma-synthase"
                     /protein_id="HAY9040058.1"
                     /translation="MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAH
                     DYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYG
                     GSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKIC
                     HLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDV
                     VTELAWWTNNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLY
                     HPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLI
                     SHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAANKG"
     gene            37599..37916
                     /gene="metJ"
                     /locus_tag="JN078_000768"
     CDS             37599..37916
                     /gene="metJ"
                     /locus_tag="JN078_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015855437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="met regulon transcriptional regulator MetJ"
                     /protein_id="HAY9040059.1"
                     /translation="MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRR
                     QVNNLRHATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINPET
                     WEY"
     gene            38100..38708
                     /locus_tag="JN078_000769"
     CDS             38100..38708
                     /locus_tag="JN078_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiX family permuted papain-like enzyme"
                     /protein_id="HAY9040060.1"
                     /translation="MKNRLLILSLLVSVPAFAWQPQTGDIIFQISRSSQSKAIQLATH
                     SDYSHTGMLVIRNKKPYVFEAVGPVKYTPLKQWIAHGEKGKYVVRRVEGGLSVEQQQK
                     LAQTVKRYLGKPYDFSFSWSDDRQYCSEVVWKVYQNALGMRVGEQQKLKEFDLSNPLV
                     QAKLKERYGKNIPLEETVVSPQAVFDAPQLTTVAKEWPLFSW"
     gene            38853..39528
                     /locus_tag="JN078_000770"
                     /pseudo
     CDS             38853..39528
                     /locus_tag="JN078_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
BASE COUNT         9732 a        10961 c         9946 g         9028 t
ORIGIN      
        1 cattcaacca aatcagccta aaactgccag tttttcgagc gtttcgaagc cgtaacgctg
       61 taaaacgggc aataattgtt cagcttctgg cgtcattgcc atacaaaagg caatattcgc
      121 atcggcagat tttgcatccg gggcttcatg ttctaacaac caggccgttc ggcgagcaat
      181 cgctgcgcca gaatccacta gccgggttcc ctctggcagc acttgtaaca gttcttcttg
      241 tagtagaggg aaatgggtgc aacccaatac aacggtatct ggcggctctt tcattcttaa
      301 ccacgggcgt aggatacgtt ttagtgcatc cagagaaaca tcttcgccat gtagcttcgc
      361 ttcagccaac tcaaccatct ctgccgagcc cagcatttct atctggcatt cattagcgaa
      421 acgcgcgatc agctcatgag tataagaacg tttaactgtt ccgcgggttg ccagtaatcc
      481 gacaatgcca tttgccgtca gacgtgcagc aggtttaatc gccggcacga caccaacaac
      541 cgggaagtcg aacttttcgc gtaatgcagg aagtgaaacg gtactggcag tgttgcaagc
      601 gaccacagcc agcgcaaggg gataacgttc ttgcaccgcg gtgacaattg ccaccactcg
      661 ctcaacaata aacgcttcgc ttttttcgcc atacgggaaa gcgacgttat cgaaagcata
      721 aatgtaatgg agatccggta agagatgccg gatctcgtca tagaccgaca acccaccgac
      781 gccggagtca aacaccagca cggtgggacg tggttcagaa ggtgtagctg ccagacaagg
      841 tgtattcccg tcctgcagtt tggtagccat agactgtctc ataatctttg tcgaacaggt
      901 tggctatttt accacgaact gtcaggtgag aggtgaccgg atacgcaacc gcaagatccc
      961 acaagctcac accgcccatt ttaacggttt gataaggata agatgagtaa tccttatcat
     1021 agcgagtgcc taaatactga taagtaatac cccagtcgaa gtcatacaac tgccagtcga
     1081 gctggtattt cacctgctgt ttagcacggc gtaacaacgg cgtgtcggta atcgcattgc
     1141 gcgcatcgac ataatcataa ctcacagtat gcgtcagtgg tccggtatca aaattggcgg
     1201 tcgcctcgac gcccttaatc cgcgctttcc cttcgttgta atatttcagg gtgtgatcat
     1261 cataatcgat caagtcactg acatcgttac gatatccgga aatacgccag ttcaccccag
     1321 cggttaagcc ttcaaacgcg ccttcccact gtttgctttt ctccgggtcc agattcggat
     1381 ttccgtagaa gccatacagt tgccccagat ttggtgcctt ataagatgtc ccgtaggaag
     1441 caatgaagcg ataaccttcg atgaattccc aaccggcgct ggtttgccag gttccatgac
     1501 gaccaaactg tgagttatcg tcactgcgtg ctgcgccttc aaaggtaaaa tcgccgactt
     1561 gttgcagccc ggtcagatag atgccggtat tacgttgatc atatccatcc tcaacataac
     1621 ctgtacccgg cgtcgtagtc tgtttctgcc agtcgacacc cgcaccaata ctaccgtgac
     1681 caacgatgac attgtttgcc cactggacgg tgtattgctt catctcatcg agcgtcgccg
     1741 acgaatcata acgaccataa tggggatcgt agttgtaatc tttgctatgg ctatagctgg
     1801 taatgagttg tgatttaatc agttcgccgt tatagcgcag cccggcgtcc caactttggc
     1861 tatagagttt acggatatcg agcaacggtg aaccgggaga ataatacgcg tcataattgg
     1921 tacggttatc atagccatag ccgcgcacaa agccgctcca ggcatcagta aagttatgct
     1981 ccagcgcgcc ataaagcgtt ttacttaaaa aaacatcgtt atctgtctgc gcttgcgttc
     2041 cggtattacc ataggcaaca acatcataac catgagtatg ggcataatcg cccaacagcg
     2101 ttacccgtgt cttatccccc agttgttgct gcgtagagac atcatagttc tgataactat
     2161 tgcttcccca ccctgctgaa atttccgttc cgggttcatc gcgcgtcgtg atgatattca
     2221 ccaccccgcc tattgcatcg gaaccataaa cagcggagcg cggcccacgg atatattcaa
     2281 cacgctggac aagcgcacgc aatagggaac tggctaaggt cggcagaacc actcaccccc
     2341 gccagattca ggcgtacgcc atcaattaac accaacacat gactggcatt tgtaccgcga
     2401 ataaaaatag atgagagctg acctgaaccg ccgttttggg tgatatcgac gcccggaaga
     2461 cggcgcagca catcattgac cgaggtcgac tgccagcggt cgatatcctg acgggtcaca
     2521 acggtggttg gtgcaagcac agtgctgcgc ggctgttcaa aacggttagc agtaacgacg
     2581 agagtatccg ggctggtatc ctgtgcccaa gcggaaaagg ctgtgacaga acacgccgtc
     2641 agcagcgaag cttttttaat cattgtaaag catccacaat agaagaagga tgccgcaggt
     2701 ttcatcaata ttacgcgatg atgagacgtt ggccggcagg tcttcgggct tggaggggta
     2761 tctaagatac taagagatga tgacttccca ccggatggca gtgtccgcat aacgcaatca
     2821 tcgcaccttt ccttaccgct gcgcgtcagc tccagattcg cactggattc cctattaact
     2881 cacaggaccg gcaagtggat gctacaggtt gtaacaagtt actgtccaga cgtagctcac
     2941 aaataggaat tcatcaagat ctggacatct gatgagcaat ccctacaatc gccgcgtact
     3001 ttaatttttc aggatacatc atgacccccg aacaccttcc aacagaacag tatgaagcgc
     3061 agttagccga aaaagtggta cgtttgcaaa gtatgatggc accgttttct gacctggttc
     3121 cggaagtgtt tcgctcgccg gtcagtcatt accggatgcg tgcggagttc cgcatctggc
     3181 acgatggcga tgacctgtat cacatcattt tcgatcaaca aaccaaaagc cgtatccgcg
     3241 tggatagctt ccccgccgcc agtgaactta tcaaccagtt gatgacggcg atgattgcgg
     3301 gtgtgcgtaa taatcccgtt ctgcgccaca agttgttcca gattgattac ctcaccacgc
     3361 tgagtaatca ggcggtggtt tccctgctat accataagaa gctggatgat gagtggcgtc
     3421 aggaagcgga ggccctgcgc gatgcactgc gcgcgcagaa tctgaatgtg catctgattg
     3481 gtcgggcaac gaaaaccaaa atcgagctgg atcaagatta catcgacgag cgtctgccgg
     3541 tcgcagggaa agagatgatc taccgtcagg tagaaaacag ctttacccag ccgaacgcgg
     3601 cgatgaatat tcagatgctg gaatgggcgc tggacgtaac caaaggctca aaaggcgatt
     3661 tactggagct gtactgcggc aacggtaact tttcattagc gctggcgcgc aattttgatc
     3721 gggtattagc caccgaaatc gctaagccgt cggttgctgc tgcgcaatac aacatcgcag
     3781 ctaaccatat tgataacgta caaattattc gtatggcggc agaagaattt actcaggcga
     3841 tgaatggtgt gcgcgagttt aaccgcctgc aagggatcga cttaaagagt tatcagtgcg
     3901 aaaccatttt tgtcgaccca ccgcgcagcg gtctggacag tgaaaccgag aaaatggtgc
     3961 aggcgtatcc gtgtattttg tacatctcct gtaacccgga aacgttatgc aagaatctgg
     4021 aaacattaag ccagacgcac aaggtcgaac gtctggctct gtttgatcag ttcccctaca
     4081 cgcaccatat ggagtgcggc gtattactga ccgcgaagta aaacccatgc cggatgcgcc
     4141 agcatccggc ataataccga ttactcagca acttcctgct tacggttacg catcttcgcg
     4201 ccaatccaga acaccataat gacggagagt actgccggga agaagttaga gccgatatcc
     4261 ggatattccg cacgaactac cgtgctgtac agcagtacgc cgagaataaa acaggcagct
     4321 gccagacccg gcaagcctac cggcatagtg cgattaagat aacgttgatg caggcagtaa
     4381 accgtcagca ccagggaaat aatcgggaat acagaaaatg gcacaatgga gctaaacagc
     4441 gctgcgaaag taccattaat cgataagcca gcaactaacg ccagcagcag cgtacctcta
     4501 tcttgatttg cttgtttcat tactcgtcct tcacatttcc cggaataatt gcggttttct
     4561 cttgttcacg gcgataccag taataagccc ctttcgaaat cattcgcagt tgcagtacca
     4621 gtcgctcttc taattgccga cgttgttcga cgccgacgtc caacgcctcg gcacccgcac
     4681 tgaagacaat tgtcaccatt gcttcggctt gcgcttcagt aaacgcacgc ggcatatggt
     4741 tttcgagttc cagatagtcc gcaagttccg caatgaagtg ctgaatttca cgcgcaacgg
     4801 cggcacgaaa cgcagcggag gtgccggagc gttcccgcaa taataaccgg aaggcgttag
     4861 gattattacc gatgaactcc ataaatgtgg agaccgaggt gcggatcaca ctcccgcctt
     4921 tggcgatacg ctgacgcgcc tggcgcatga gttggcgtag cattaaaccg ctctcatcaa
     4981 ccatggtcag acccagttcg tctacgtcgc ggaaatgccg ataaaaagag gtgggagcaa
     5041 tgcccgcttc acgcgccact tcacgcaaac tcaggctggc gaagctgcgt tcagcactta
     5101 attggctaaa tgcggcttcc accagcgaac ggcgggtttt ttctttttgt tgcgctctta
     5161 tgcccatcac gatgtctgaa tccttgccaa aagtactgct ggcactatac cagagaatga
     5221 acatactgga ttgctccagt attgtgaatg aacggtaacg caataaaaca tatttactgg
     5281 ccggttcttt tacgtacagc ggaaacctgc cgcttaaacg gagagtatcg tcgataaaaa
     5341 tccaataaaa cgtcagggca aaagtaagaa acagacaaag caaaggccgc tcaggatata
     5401 gccagataaa tgacggggat caattggctt acccgcgata aaatgttacc attctgttgc
     5461 ttttatgtat aagaacaggt aagccctacc atgccacatt cctacgatta cgatgccata
     5521 gtaataggtt ccggccccgg cggcgaaggc gctgcaatgg gcctggttaa gcaaggtgcg
     5581 cgcgtcgcag ttatcgagcg ttatcaaaat gttggcggcg gttgcaccca ctggggcacc
     5641 atcccgtcga aagctctccg tcacgccgtc agccgcatta tagaattcaa tcaaaaccca
     5701 ctatacagcg accattcccg actgctccgc tcttcttttg ccgatatcct taaccatgcc
     5761 gataacgtga ttaatcaaca aacgcgcatg cgtcagggat tttacgaacg taatcactgt
     5821 gaaatattgc aggggaacgc tcgctttgtt gacgagcata cgttggtgct ggattgcccg
     5881 gacggcagcg tcgaaacact aaccgctgaa aaatttgtta ttgcctgcgg ctctcgtcca
     5941 tatcatccaa cagatgttga tttcacccat ccacgcattt acgacagcga ctcaattctt
     6001 agcatgcacc acgaaccgcg ccatgtactt atctatggtg ctggagtgat cggctgtgaa
     6061 tatgcgtcga tcttccgcgg tatggatgta aaagtggatc tgatcaacac ccgcgatcgc
     6121 ctgctggcat ttctcgatca agagatgtca gattctctct cctatcactt ctggaacagt
     6181 ggcgtagtga ttcgtcacaa cgaagagtac gagaagatcg aaggctgtga cgatggtgtg
     6241 atcatgcatt tgaagtcggg taaaaaactg aaagctgact gcctgctcta tgccaacggt
     6301 cgcaccggta ataccgattc gctggcgtta cagaacattg ggctggaaac tgacagccgc
     6361 ggacagctga aggtcaacag catgtatcag accgcacagc cgcacgttta cgcggtgggc
     6421 gacgtgattg gttatccgag cctggcatca gcggcctatg accaggggcg cattgccgcg
     6481 caggcgctgg taaaaggcga agccaccgca catctgattg aagatatccc taccggcatt
     6541 tacaccatcc cggaaatcag ctctgtgggc aaaaccgaac agcagctgac cgcaatgaaa
     6601 gtgccatatg aagtgggccg cgcccagttt aaacatctgg cacgcgcaca aatcgtcggc
     6661 atgaacgtgg gcacgctgaa aattttgttc catcgggaaa caaaagagat tctgggtatt
     6721 cactgctttg gcgagcgcgc tgccgaaatt attcatatcg gtcaggcgat tatggaacag
     6781 aaaggtggcg gcaacactat tgagtacttc gtcaacacca cctttaacta cccgacgatg
     6841 gcagaagcct atcgggtagc tgcgctaaat ggcttaaacc gcctgtttta acactttatc
     6901 gaaatggcca tccattcttg cgcggatggc ctctgccagc tgctcatagc ggctgcgcag
     6961 cggtgagcca ggacgataaa ccaggccaat cgtgcggcga ggttccggct taatacacgg
     7021 caaataaaca accccatcgc gtttgcgctc cggcggcaca gccagcgcag gcagtaaagt
     7081 gatcccgcta cctgccgcca ccatgttacg cagtgtctcc aggctggtcg cgcggaagtg
     7141 tgtatcttca tccgccccgg cttcaaagca gaaacccatt gcctgatcgc gcaaacagtg
     7201 accatcttcc agcatcagca gtttttcccc tgccagatcg gccatcggta cgcattcgcg
     7261 gttcgcccac gggtgatctt catagatagc cagcaacatt ggctcatcaa acaacggcac
     7321 ttcaatgaat gcttcgctct ctttcaccag cgcgaggatc acgcaatcga gtttgccgct
     7381 gtccagttgc gccagtaact ggtgggtctg tgcttcatgc agatacattt ccagctttgg
     7441 aaatgtctgg tgcagcatcg ggataatatg cggcagcagg tacggtccaa ccgtaggaat
     7501 caaaccaata tgcagcggtc cggacatcgt ctcgccctgc tggcttgcca tctctttaag
     7561 gactttcacc tcacgcagca cggtacgcgc ctgatccacc agcagcattc ccgcctgggt
     7621 gaacaacact ttacggctgg tccgctccag caacatcacg cccagctcat cttccagctt
     7681 acgaatttgg ccgctaagcg tcggctggct aacgtggcag gaatctgccg cacgccgaaa
     7741 atggcggtgt tcagccaatg ccaccaggta ctcaagatca cgaatattca ttatccatcc
     7801 tccatcgcca cgatagttca tggcgatagg tagaatagca atgaacgatt atccctatca
     7861 agcattctga ctgataattg ctcacagaaa cggagcggca cctcttttaa cccttgaagt
     7921 cactgcccgt ttcgagagtt tctcaactcg aataactaaa gccaacgtga acttttgcgg
     7981 atctccagga tccgcttttt tttgccataa aaaagcccgg cgataagcca ggctcaaatt
     8041 tgtacatata aatgttctta ccccaaccgc gcctgcgcaa aagcaatcgc ttgggccacc
     8101 tgctgcggtg agacgccgcc ttttgccgca cgcttgtcga ggcacgattg tagcgacaga
     8161 atcggataga catcttcgcc aatcacgtgg ctgaatttct gcaactcgtc gagcggcaga
     8221 tcttccagcg gtttgccctg acgaatggct tccaccaccg cttcacccac gatatggtgc
     8281 gcctcgcgga aaggtacgcc tttcgccacc aggtaatccg ccagttcggt ggcgttggcg
     8341 taaccctgct gagccgcttc ctggcaacgt ggacgtttca cctgaatgcc gtccagcacc
     8401 agcgccgcca tatgcaggca gtccagccag gtatcgaacg cgtcgaacag accttctttg
     8461 tcttcctgca tatctttgtt gtaagccagc ggcaaacctt tcagcgtcat catcatgccg
     8521 gttaacgcac cctgcacccg accgcattta ccgcgaatca gctccagcgc atccgggttt
     8581 ttcttctgcg gcattaatga tgaaccggaa gtcacgcggt cagaaagctc cacaaacccc
     8641 gcttcgccgg tgttaaagaa aatcagatct tcagcaaaac gcgacagatg caccatgccg
     8701 atagcggcag ccgacagcag ttccaacaca tggtcacggt cagaaacgct gtccagactg
     8761 ttacgggtcg ccgaagcaaa gcccagccag cctgctaact gttcacggtc gatttcatag
     8821 gccgttcccg ccagcgcgcc acagcctaat gggctgacat ccagacgctt aagcgcatcc
     8881 tgcaaacggc tttcatcacg cgccagcatc tcaacatagg ccaggcacca gtgcgcgaac
     8941 gtcaccggct gggcgcgttg caggtgagtg taacctggca ttaccgcgtc ctgattgttt
     9001 tgtgcggttt ccaccagcgc cgattgcagc tgccggttag ccgtcagtaa ctcgctaacg
     9061 gtatctttgc accacagttt caggtcagtc gctacctgat cattacggct acgcccggta
     9121 tgcagctttt tgcctaactg gcccactttg tcgatcagtt tgccttccac ccagctatgg
     9181 atatcttcgg cgtcgctttc aaggatttgt tgtggcctgg cgcgaacatc ttccagcaac
     9241 acgttcagcg cctcttccag ttgcgcctgc tcttctgcgg ttaacacgcc gaccgttacc
     9301 agggctttgg accaggccac agagccaaca atatcctgct ccgccagacg gtaatcaaag
     9361 cgcagtgagt cgttgaattg tttgaaccgt tgatctgctg cctgggtaaa acgcccgccc
     9421 caaagtgcca taactctgtt tccttatttt gaaattcaat gccggaaagc tgcgcctccg
     9481 gctaacaaaa cttaagctaa aatccgcgta cccatcggca taccgttaaa cagtgccgga
     9541 agctgctccg catgacgcca ggaggcgata tctaccggac ggcccagcgt gcgggccgca
     9601 tccagcgccg cgttcacttt cactatcatg ccgtcagtaa taatgccctg ctcaatcagt
     9661 tgttctgctt tcgcggcggt catttcggca atgcgttgcc ctttgccgtc gagaatgccg
     9721 ctgacgtcgg agagcaaaat cagatccgcg cccagcgttg ccgccagcgc cgttgccgcc
     9781 tggtcggcat tgacgttcat cagttgccct tcgtctgtta cgccaatgga gctgaccacc
     9841 ggcagataac cgttctccag caaggagttg ataagcttag gcgaacctgg ctgcgccagt
     9901 ccaacatgac ctaactcttc atcaagctgg gtcactttga cgctgtcgcc atcaccgaga
     9961 aacaaaccta cagccgcaat ctgatgtttc ttcgcccatg ccaacagggt tttatttgcc
    10021 gttcccgcca gtgctccggt gataatgtct atctgatcag caggcgtcac ccgcaggccg
    10081 tttttctttt tcaccggcag attcagccct ttcatcagct catccaccac gcaaccgccg
    10141 ccgtgcacaa tcaccagcgg acgctgatgt gactcacgat aattcaccag tgcgctaaac
    10201 agacgttcca gcgcctcttc actatccagc agtacgccgc ccagtttgat aattaatgga
    10261 ttcatcattg cacccttaaa taagagactg cgtttccgca tagccgaaac gaatattggc
    10321 gcactgtacc gcttgtgccg ccgcgccttt cagtaagttg tcttcggtcg ccacaataat
    10381 cagatgctcg ccctgaacgg caaacccgat atcgcaaaat ggcagcccaa cgacattttt
    10441 cagcgccgga acgcctttgt catacagccg caccagcggt ttatgggcat acgcctgctg
    10501 taacacttgc gcgacttgcg cctgggtcac acccgatttc aggcggcagg taatggtttc
    10561 gagaatgccg cgcgggaaat tgcccagatg tggggtgaag ataacgtcag caccgaggtg
    10621 tgtggcgatc tctggttgat ggcgatgagt aaagacgcca tacggttgca ggctaacttc
    10681 acaaaaacta tttgaaatcg ctgccttacg tcctgcaccg ctcacgccgc tggtggcgtt
    10741 aatcgccggc cactgattga ggtcaagaag atcggcatca atcaacggtt tcagcgccag
    10801 ctgtgccgcc gtcggataac agcctggcac cgcaatcaaa ttcgcttctt ttaatttatt
    10861 accgcaccac tccgccagac cgtaggctgc ctgttccagc agttccgggt attgatgggt
    10921 aaagccgtaa tatttttcat agaaggtggc gtcgttaaca cgaaacgcgc cggaaaggtc
    10981 gaacaccacg cagcccgctt caagaaactg cggcgctaaa tcgtggctaa cttcatgggc
    11041 ggtggcgaga aacactacgt ccacccctgg gctaaactcg ctgatatccg acatcggctg
    11101 caacggcagc tcaacgatgc cttttagctg cggatgcaaa tcggagatta actttcccgc
    11161 atcattgctt tgcgctgaaa cagtcaaagc ggttatgttc atatgcggat ggcgatttac
    11221 ataggtcact agctctgcgc cagcgtagcc gctggcaccc acaatcagcg tattcaacat
    11281 cggggctatt caccttctta tgtctggttg ccaggttaaa cgtaaaacat tcaccttacg
    11341 gctggtgggt tttattacgc tcaacgttag tgtattttta ttcataaata ctgcatgaat
    11401 attgatacta tcatgaccag aggtgtgtca acaatgaaaa acaaattacc gccatttatc
    11461 gagatttacc gcgctctgat tgccacacct tcaataagcg ctacggaaga ggcactcgat
    11521 caaagcaatg cagatttaat cactctgctg gcggactggt ttaaagattt gggcttcaat
    11581 gtggaagtgc agcctgttcc aggaactcgc aacaaattca atatgctggc aagtatcgga
    11641 cagggggctg gcggcttgtt gctggcgggg cataccgata cggtgccatt tgatgacggt
    11701 cgctggacgc gcgatccgtt tacactgacg gagcatgacg gcaagcttta cggcttaggc
    11761 accgccgaca tgaaaggctt ttttgcgttt atccttgatg cgctacgcga tatcgacgtc
    11821 acgaaactga aaaaaccgct ctacattctg gcgactgctg atgaagaaac cagtatggcc
    11881 ggagcgcgtt attttgccga aactaccgcc ctgcgcccgg attgcgccat cattggcgaa
    11941 ccgacgtcac tacaaccggt acgcgcacat aaaggtcata tctctaacgc catccgtatt
    12001 cagggccagt cggggcactc cagcgatcca gcacgcggag ttaacgctat cgaactaatg
    12061 cacgacgcca tcgggcatat tttgcaattg cgcgataacc tgaaagaacg ttatcactac
    12121 gaagcattta ccgtgccata ccctacgctc aacctcgggc atattcacgg tggcgacgct
    12181 tctaaccgta tttgcgcttg ctgtgagttg catatggata ttcgtccgct gcctggcatg
    12241 acactcaatg aacttaatgg tttgctcaac gatgcattgg ctccggtgat cgaacgctgg
    12301 ccgggtcgtc tgacggtcga cgagctgcat ccgccgatcc ctggccatga atgcccaccg
    12361 aatcatcaac tggttgaagt ggttgagaaa ttgctcggag caaaaaccga agtggtgaat
    12421 tactgtaccg aagcgccgtt tattcaaacg ttatgcccga cgctggtgct cggtccgggt
    12481 tccatcaatc aagctcatca gcctgatgaa tatctggaga cgcggtttat taaacccacc
    12541 cgtgagttga ttatccaggt aattcaccat ttttgctggc attaaaacgt aggccggata
    12601 aggcgctcgc gccgcatccg gcaccgttgc caaactccgg tgccgcaata atgtcggatg
    12661 cgatgcttgc gcatcttatc cgacctacac ctttggtgtt atgtatggcg attttttaac
    12721 atttccataa gttacgctta tttaaagcgt cgtgaattta atggcgtaaa ttcctgctat
    12781 ttattcgttt gctgaagcga tttcgcagca tttgacgtca ccgcttttac gtggctttat
    12841 aaaagacgac gaaaagcaaa gcccgagcat attcgcgcca atgcgacgtg aaggatacag
    12901 ggctatcaaa cgataagatg gggtgtctgg ggtaatatga acgaacaata ttccgcattg
    12961 cgtagtaatg tcagtatgct cggcaaagtg ctgggagaaa ccatcaagga tgcgttggga
    13021 gaacacattc ttgaacgcgt agaaactatc cgtaagttgt ccaaatcttc acgcgctggc
    13081 aatgatgcta accgccagga gttactcacc accttacaaa atttgtcgaa cgacgagctg
    13141 ctgcccgttg cgcgtgcgtt tagtcagttc ctgaacctgg ccaacaccgc cgagcaatac
    13201 cacagcattt cgccgaaagg cgaagctgcc agcaacccgg aagtgatcgc ccgcaccctg
    13261 cgtaaactga aaaaccagcc ggaactgagc gaagacacca tcaaaaaagc agtggaatcg
    13321 ctgtcgctgg aactggtcct cacggctcac cctaccgaaa ttacccgtcg tacactgatc
    13381 cacaaaatgg tggaagtgaa cgcctgctta aaacagctcg ataacaaaga tatcgctgac
    13441 tacgaacaca accagctgat gcgtcgcctg cgccagttaa tcgcccagtc atggcatacc
    13501 gatgaaatcc gtaagctgcg tccaagcccg gtagatgaag ccaaatgggg ctttgccgta
    13561 gtggaaaaca gcctgtggca aggcgtacca aattacctgc gcgaactgaa cgaacaactg
    13621 gaagagaacc tcggctacaa actgcccgtc gaatttgttc cggtccgttt tacttcgtgg
    13681 atgggcggcg accgcgacgg caacccgaac gtcactgccg atatcacccg ccacgtcctg
    13741 ctactcagcc gctggaaagc caccgatttg ttcctgaaag atattcaggt gctggtttct
    13801 gaactgtcga tggttgaagc gccccctgaa ctgctggcgc tggttggcga agaaggtgcc
    13861 gcagaaccgt atcgctatct gatgaaaaac ctgcgttctc gcctgatggc gacacaggca
    13921 tggctggaag cgcgcctgaa aggcgaagaa ctgccaaaac cagaaggcct gctgacacaa
    13981 aacgaagaac tgtgggaacc gctctacgct tgctaccagt cacttcaggc gtgtggcatg
    14041 ggtattatcg ccaacggcga tctgctcgac accctgcgcc gcgtgaaatg tttcggcgta
    14101 ccgctggtcc gtattgatat ccgtcaggag agcacccgcc ataccgaagc gctgggcgag
    14161 ctgacccgct acctcggtat cggcgactac aaaagctggt cagaggccga caaacaggcg
    14221 ttcctgatcc gcgaactgaa ctccaaacgt ccgcttctgc cgcgcaactg gcaaccaagc
    14281 gccgaaacgc gcgaagtgct cgatacctgc caggtgattg ccgaagcgcc gcaaggctcc
    14341 attgccgcct acgtgatctc gatggcgaaa acgccgtccg acgtactggc tgtccacctg
    14401 ctgctgaaag aagcgggtat cgggtttgcg atgccggttg ctccgctgtt tgaaaccctc
    14461 gatgacctga acaacgccaa cgatgtcatg acccagctgc tcaatatcga ctggtatcgc
    14521 ggcctgattc agggcaaaca gatggtgatg attggctatt ccgactcagc aaaagatgcg
    14581 ggcgtgatgg cagcgtcctg ggcgcaatat caggcacagg atgcattaat cagaacctgc
    14641 gaaaaagcgg gtattgagct gacgttgttc cacggtcgcg gcggttccat tggtcgcggc
    14701 ggtgcacctg cccatgcggc actgctgtca caaccgccag gaagcctgaa aggcggcctg
    14761 cgcgtaaccg aacagggcga gatgatccgc tttaaatatg gtctgccaga aatcaccgtc
    14821 agcagcctgt cgctttatac cggggcgatt ctggaagcca acctgctgcc accgccggag
    14881 ccgaaagaga gctggcgtcg cattatggat gaactgtcag tcatctcctg cgatgtctac
    14941 cgcggctacg tacgtgaaaa caaagatttt gtgccttact tgcgctccgc tacgccggaa
    15001 caagaactgg gcaaactgcc gttgggttca cgtccggcga aacgtcgccc aaccggcggc
    15061 gtcgagtcac tacgcgccat tccgtggatc ttcgcctgga cgcaaaaccg tctgatgctc
    15121 cccgcctggc tgggtgcagg tacggcgctg caaaaagtgg tcgaagacgg caaacagagc
    15181 gagctggagg ctatgtgccg cgattggcca ttcttctcga cgcgtctcgg catgctggag
    15241 atggtcttcg ccaaagcaga cctgtggctg gcggaatact atgaccaacg cctggtagac
    15301 aaagcactgt ggccgttagg taaagagtta cgcaatctgc aagaagaaga catcaaagtg
    15361 gtgctggcga ttgccaacga ttcccatctg atggccgatc tgccgtggat tgcagagtct
    15421 attcagctac ggaatattta caccgacccg ctgaacgtat tgcaggccga gttgctgcac
    15481 cgctcccgcc aggcagaaaa agaaggccag gaaccggatc ctcgcgtcga acaagcgtta
    15541 atggtcacta ttgccgggat tgcggcaggt atgcgtaata ccggctaatc ttcctcttct
    15601 gcaaaccctc gtgcttttgc gcgagggttt tctgaaatac ttctgttcta acaccctcgt
    15661 tttcaatata tttctgtctg cattttattc aaattctgaa tataccttca gatatcctta
    15721 aggaattgtc gttacattcg gcgatatttt tttcaagaca ggttcttact atgcattcca
    15781 cagaagtcca ggctaaaccc ctttttagct ggaaagccct gggttgggca ctgctctact
    15841 tttggttttt ctctactctg ctacaggcca ttatttacat cagtggttat agtggcacca
    15901 acggcattcg cgactcgctg ttattcagct cgctgtggtt gatcccggta ttcctctttc
    15961 cgaagcggat taaaattatt gccgcagtaa tcggcgtggt gctatgggcg gcctctctgg
    16021 cggcgctatg ctactacgtc atctacgggc aggagttctc gcagagcgtt ctgtttgtga
    16081 tgttcgaaac caacaccaac gaagccagcg agtatttaag ccagtatttc agcctgaaaa
    16141 ttgtgcttat cgcgctggcc tatacggcgg tggcagttct gctgtggaca cgcctgcgcc
    16201 cggtctatat tccaaagccg tggcgttatg ttgtctcttt tgccctgctt tatggcttga
    16261 ttctgcatcc gatcgccatg aatacgttta tcaaaaacaa gccgtttgag aaaacgttgg
    16321 ataacctggc ctcgcgtatg gagcctgccg caccgtggca attcctgacc ggctattatc
    16381 agtatcgtca gcaactaaac tcgctaacaa agttactgaa tgaaaataat gccttgccgc
    16441 cactggctaa tttcaaagat gaatcgggta acgaaccgcg cactttagtg ctggtgattg
    16501 gcgagtcgac ccagcgcgga cgcatgagtc tgtacggtta tccgcgtgaa accacgccgg
    16561 agctggatgc gctgcataaa accgatccga atctgaccgt gtttaataac gtagttacgt
    16621 ctcgtccgta caccattgaa atcctgcaac aggcgctgac ctttgccaat gaaaagaacc
    16681 cggatctgta tctgacgcag ccgtcgctga tgaacatgat gaaacaggcg ggttataaaa
    16741 ccttctggat caccaaccag cagacgatga ccgcccgcaa taccatgctg acggtatttt
    16801 cgcgccagac cgacaagcag tactacatga accagcaacg tacgcagagt gcgcgtgaat
    16861 acgacaccaa cgtgctgaag ccgttccagg atgtgctgaa tgaccctgcg ccgaagaaac
    16921 tgatcatcgt tcatctgctg ggtacgcata tcaaatacaa ataccgctac ccggaaaatc
    16981 agggcaagtt tgatggcaat accgatcatg ttccgccagg attaagcgca gaagagctgg
    17041 aatcatataa cgattatgac aacgctaact tgtataacga tcatgtggtt gccagcctga
    17101 ttaaagactt taaagcggca gacccgaacg gattcctggt ttacttctct gaccacggtg
    17161 aagaggttta cgacacgccg ccgcacaaaa ctcaggggcg taacgaagac aacccgacgc
    17221 gccacatgta caccattccg ttcctgctgt ggacgtcgga aaaatggcaa gcgactcatc
    17281 cccgtgattt ctcactggat gtcgatcgta aatacagcct ggcggaactg atccacacct
    17341 ggtcagattt ggcgggctta tcttacgacg gttacgatcc aacccgttca gtggtgaatc
    17401 cgcagttcaa agaaactacc cgctggattg gtaacccgta caagaaaaac gcgctgatcg
    17461 attacgacac tctgccgtat ggcgaccagg taggtaatca gtaattatca gccaggcgct
    17521 atttgccgga tgcgacgctt gacgcgtctt atccggccta cagatcgcgg cggtaggctg
    17581 gataaggcgt ttacgccaca tccggcaata caactgccgc aatgtttaca tcgaactccc
    17641 ctcaggccac acttttcagg tggccttttt taataatgcc agttactgtt ttcccgtcta
    17701 catacctaag ggaataacat gtatcacgac atcagctatc tgctctcccg cctgatcaac
    17761 ggcccggtgc ccgatcttgc gtatcaggtc gattttccac ggctggaaat tgtgctggaa
    17821 ggtgagtttg ttgataccgg cgctggagca acgttagttc ccggcgatgt gctgtacgtt
    17881 gccgctggtg gctggaattt cccacaatgg aaaacaccca ctaccacctt tagcgtgctg
    17941 tttggcaaac agcaactcgg cttcagcgtc gtgcaatggg atggcaaaca atatcaaaat
    18001 ctggcgaagc aacacgtcgc ccgacgcggc ccacgtatag gttcttttct gctacaaacg
    18061 ctcaatgaaa tgcaaatgca gccgcaggag cagcaaacgg caaggcttat cgtagccagc
    18121 ctgcttagcc actgccgcga tttgctcggc agccaaatcc agaccgcctc acgcagccag
    18181 gcactatttg aagctattcg cgattatatc gacgaacgct atgcctccgc gcttacccgc
    18241 gaatctgtcg cacaggcatt ctatatttca ccaaactatc tctcgcacct gtttcaaaaa
    18301 acgggggcca ttggttttaa cgaatacctg aatcacacgc gactggagca cgctaagacg
    18361 ttattgaaag gctatgacct gaaggtaaaa gaagtggcgc acgcctgcgg ctttgtcgac
    18421 agcaactact tctgccgtct gtttcgtaaa aacaccgaac gctcgccgtc ggaatatcgc
    18481 cgacagtacc acagccaact gacagaaaaa ccgactactc cagaataaga tgggtttgct
    18541 gcggcgcaga aagcactttg cgcaccgcgc tcattacccg ctgcggctca cgcaggaatg
    18601 cgtagatgct gcattgcaca tagcggcaat gttcaaatcg ctcggcaccg gcaagctcga
    18661 tatccgtaat caacagagca acatccgccc gacggatatc ctcgtccgct aaacgattct
    18721 ccgttcccag cgcgccctga gtttcaatgc tgacgcccca cttctctaac tggcacaact
    18781 tttccagccg ttccgccgcc atataagtat gcgccacgcc gcttacgcag gcggttactg
    18841 ccaccaggta tgccatttta acctcccacg gtaacctgaa atccggcccg ttctgccatt
    18901 tcgcgcatcg ttgccacatc ggctgatgac ggcgcagcaa catccttcat cgaccatgtt
    18961 ttccccagca ggcggtattt cggctcgccg tactgatgaa acggcaacag atggatctgc
    19021 ctgatattca gcgggatcag cacgtccagc gcctgctgca tattctcccg gctgagtgtg
    19081 aaaccgggga tcagcggcaa acgcgggatc acgttgacac cctcactcac cagcaaacgc
    19141 aggttctcca gtacgcgtgg caggttcatc ttcaccacat cccgcgcctg agtcgcgtcc
    19201 ataattttta aatcgaacaa cacttcatcg cacaatttcg ccagcggtaa cagcttgctg
    19261 gctggtgcgt ctccggcagt ttcaatggca catgagacac cccacagccg cagtcgctgt
    19321 aaaaaacggg tagcaaactc cgcctgcatt aacacttcgc cgccagaaag cgtgacgccg
    19381 ccgccggacg tgcgaaaaaa aatgtcatct ttcatcactt cccgttccag agcgtcaagg
    19441 ctgatatcgc gaccaatccg ttcaaacgcc ccggaggggc attcatccgc atcacgcaaa
    19501 catttcgcac agtgcagaca tttcgcctct ctgcgtaccg tctggatttt gccggagatc
    19561 gactccggat tagcacacca cgggcaaaga tgcggacagc ctttaaaaaa gaccaccgta
    19621 cgaatgccct cgccgtcatt cagtgaataa cgctgaatgt tgaaaatgcg cgccacatca
    19681 ttgaggcgcg tttccacaac gttacagctg atgcgctgtc cggcggatga tgtcatcctg
    19741 gatctccttc gacagttcga caaagaaggc gctgtatccg gcaacgcgca ccaccagccc
    19801 ggcataatct tgtgggcgct gttgcgcttc ccacaacgtg tcggcgttca ccacgttaaa
    19861 ctgaatatgc tgcaacttaa gctgggtaaa cgcccgtaag aagtcggcca gtttgcgtaa
    19921 tcccgcttca ccttccaggg tcgccggagt gaatttcacg ttcagcaacg taccgttaga
    19981 cagcagcgta ttatcgagct tactgactga cttcagtacc gctgttggcc cttgttcgtc
    20041 ctggcccagc ataggtgaca agccgccgtc tgccagctgt tctccggcaa aacgaccgtc
    20101 tggcgtcgcg ccaaccaccg atcccaacgg gacgtgagca gaaacggtat acgatcccgg
    20161 cgtgaagtaa ccaccgcgcg ggttctggta tttttccact tctttgcagt agtggcgcaa
    20221 cagttcggcg ctaatgttat ccacctcgtc gatatcgtta ccatatttct caaagcggtt
    20281 aattaagcga gcgcggactt tttcgccttc tggcgttgca aagttggctt ttaataccga
    20341 cagcaattcg tcaaaactta aacgctgttg ctcaaaaacc atccctttca acgcatggag
    20401 agaatcgctc aggttggcga taccgatccc ctgtacgccg gagaagttat aacgcgcgcc
    20461 gccatcggta atatcgcgac ctttttccag acaatcgctg ataaaagacg agagcagcgg
    20521 tacaggtgcc cagtcgcgat ggccgatatc acaaatattg ctgccctcaa ccatcagggt
    20581 gatgtagtgg ctgatcttgg cgcggatctg ctccagtaaa ccttcataag tcagcgcagc
    20641 attgccttca ttttcatgca ggcagatttc catcactttc agcagattaa acatcgcgat
    20701 gtcatgcaag ccgtaggttc tgccgggaat agataattcc acacagccca ctacggaata
    20761 gtcgcgcgca tcttccagcg aaacgccacg gttgaggaac gctggtacca ccacttcatc
    20821 gttaaagatt tgcggaatac cggtgccgag gcgaatggtt tcggcggttt tcatcaggaa
    20881 tggcgtgtcg atcaaggcgt tagtgcgcac gccgaggttc ggttgcggta attgcacgct
    20941 ttgataggcg tcaaggcaaa ggaacgaaag cacgttcacc gcgctacgtc cgttctcggt
    21001 taacccgccg agcagtgcgg tatagccggt cgggaaacct gcgaaataac gcgcgctgct
    21061 ggtggagcgc aacagcacga tgtcgttgca tttcacccat aaagattcga gcagttcttt
    21121 caggaacgcc ggatcttcgc cctgggttaa agatgcctga tagaacggca acatatactg
    21181 gtcgaagcgc cctaaagaca gcgaactggc gttggattcg tattgcagaa tgatgttcat
    21241 gtaccagaat aactggcacg cctgccagaa cgtctgcggc ttatgttcgg cgttatggcg
    21301 agagatctcc gcaatagtca gcagttcttc gcgacgctgg gcatctgtgc agtttgccgc
    21361 catcgtttcc gccagtacag cgtaacgcaa aatgtgtttc tgcgaggctt ccagcagtaa
    21421 cagcgctgcc tgataaaagt gattctccgg ctgttgctga caatgttgct gcatctgtgc
    21481 caccaactcc cccagcccgt gattcaacag gcgtgggtaa tcaataataa tgtgcccctg
    21541 gcctttatcc gtctggttaa tgctgaaaat ctgcgtgctg gtcgcggctt ttacttcatc
    21601 cgtcatctgc ccgttgatga aatctttcat cgaacgtttt tcccagtacg ggaacaactc
    21661 ttcacgatag atacgtttat cttcttcgct gatagcaaag cggtcctgcg gacgcgtcgg
    21721 gaattgatcc agctctttca gcagccagta agggtccatt tccggcgaca taatcccggc
    21781 gcgcggtttt acggtgcggt taccggcaat cagttcttca tcacgaatcg aaatttcaac
    21841 atgttcaagg atatacgctg ttgctttcgc ccggcgcaat atcaccggtt cgccttcggt
    21901 ttgccgatgg ctggcggtat aaagcagcgc ccgctccagc gagatttcac gggtattggc
    21961 aaacagtgca gttttgaggc gagagatacg attcgtcatg aggaactcct gtgggaaagc
    22021 gaacccgccc ttgcgagcgg gagaagaact taagcggttt gcgccaggtg agcttcaatt
    22081 ttgctcataa tggcgtcagc acgttttact gcatcgctga tgttgacgcg cacgatggtc
    22141 ttgccagcaa aacgctcttc aaacttgatg ccgatatctt tggtcagaat caccatatca
    22201 gcgctcgcca catcttccgc agtcagttca ttttccagac caattgaccc ctgggtttct
    22261 actttcactt cccagccttt cgctttcgcg gcactttccc gcgcctctgc tgccatatag
    22321 gtatgggcaa cacctgaagg acatgcggtt actgcaataa ttttcgtcat ggctcgttcc
    22381 tcaattaatt aatttcaaaa tccaaatcca ggtcgtcttc tttttcatca gtcgaagacc
    22441 catttttacg cgccagactt ttcagcacgt tcacacaaac agccgtcacc actgctccga
    22501 cagccactgc tgcgatataa cccagcttgc cttcaaccac cggcagcaca atcagaccac
    22561 cccagcctgc atagcactgc gcaccgacca gcgccgcagt tactgcacca caaactgaac
    22621 cgaccatgat ggaaggaatg acacgcagcg gatcggcagc ggcgaaagga atcgcccctt
    22681 cagtaacgcc aacacagccc atcaccagtg ccgctttgcc ggtttcgcgc tcttctgcgg
    22741 agaaattttt acgaccaatc agcgtcgcca gccccatccc cagcggcggg atacaaatac
    22801 ccacggcagc gatgaccacc acggtataaa caccctgagc aacgcaaatc agcatgaagg
    22861 cataggctac tttgttaacc ggaccgccca tatcgaacgc cagcatcaga cccatgatca
    22921 ccgccagcat aacaatgctg ccctgctgca tcccctgaag ccactgagtc aggctgttgg
    22981 tcaacgcccc tacaggctcg cccaagcccc acatcatgat gcctgcggta atcagtgtgc
    23041 cgacgatagg aataatgaag ataggcatca ccgagcgcag aactttatgc accggaattt
    23101 tcttcaggta atgcaccacg atgccgccga taatcccggc gatcagtgca ccaaagaagc
    23161 ccgcaccaaa gctgttacca acccaggcac cgatagcgca cggagccagc gcagaacgct
    23221 ctgcaatgga gtaaccaatg taagcggcga ggaaaggcac catcagcgtc aaacctgcaa
    23281 cgccgatatc aaacagtttt ttcaaattcg gatcggctac ggcatccggc actgcgcctt
    23341 tgccatacaa catgacggaa accgccagca aaataccgcc cgataccacg aagggaatca
    23401 tgtgtgaaac gcccgtcatt aaatgctgac gggtattttt caggatctgc accaactcat
    23461 tcataagctg ctcccgggct tgcgaaagcc catgtccata tttttgatgg aggaaacaat
    23521 aggcaatcgc aggcggagca aacagtggat aaaaaggcca tttactggac ttttgtaata
    23581 tcagtacaaa aatgcgatcc gcctcataac ttgcgataaa ccggaagcat gccgcaaaac
    23641 ggcgtcttgt gagacgcgtc gcaaattgac ggttacatta catttgtcca gcttttggca
    23701 gatttgtcac atggcaggcc gttgccgtgc gctcttatcc tgtaaacaga aaaccgtacc
    23761 gggagagagg caatggccct gattgtggaa tttatttgtg agctacctaa cggcgtacat
    23821 gcgcgtccgg caagccacgt tgaaacgctg tgtaatactt tttcatcaca aattgagtgg
    23881 cataacctgc gcactgaccg caagggcaac gccaaaagcg cccttgcgct gattggcacc
    23941 gatacgctgg cgggcgataa ctgccagtta ctgatttccg gggccgacga acaggaagcg
    24001 caccagcgtt taagccaatg gctgcgcgat gaattccccc actgcgatgc gccgctggcg
    24061 gaagttaaat ctgacgaact ggaaccactg ccggtttcac tgaccaatct gaatccgcaa
    24121 attatccgcg cccgcaccgt gtgcagcggt agtgcaggcg gcattctgac gccgatctct
    24181 tctttagatc tcaatgcgct gagtaatctt cccgcagcca aagacgttga cgccgagcaa
    24241 tccgcactgg aaaatggcct gacgctggta ctgaaaaaca ttgagtttcg tctgctggat
    24301 agcgacggtg ctaccagcgc gatactggaa gctcaccgat ccctggctgg cgatacatct
    24361 ttacgtcagc acttactgac aggcgtcagc gagggattaa gctgtgccga agcgattgtc
    24421 gccagtgcga atcacttttg cgaagagttc gcccgttcca gcagcagcta cctgcaagaa
    24481 cgtgccctgg acgtacgcga cgtctgcttc cagttactcc agcaaatcta cggtgagcaa
    24541 cgcttcccgg caccgggcaa actgacgcag cccgccattt gtatggctga tgaactgact
    24601 cccagccagt tcctcgaact ggataaaaat cacctcaaag gtctgttact gaaaagtggc
    24661 ggcaccacct cacataccgt aattcttgcc cgttcgttca acattccgac actggttggt
    24721 gtagatattg atgcccttac tccgtggcag catcaaacga tttatatcga cggcaacgcc
    24781 ggggcgattg tggttgagcc aggggaagcc gtggcccgtt attatcagca agaagcccgc
    24841 gtacaggacg cccttcgtga gcaacagcgt gtctggctga cccaacaagc ccgtaccgct
    24901 gacggtatcc gcattgaaat tgccgctaac atcgctcact ccgtggaagc gcaggccgca
    24961 ttcggcaatg gtgcggaagg cgttggtttg ttccgcactg aaatgctcta tatggatcgc
    25021 accagtgcac cgggcgaaag cgagctgtac aacatttttt gtcaggcgct ggagtctgcc
    25081 aacggacgca gcattattgt gcgcactatg gacattggcg gcgacaaacc cgttgattat
    25141 ctgaacattc cggcagaagc taacccgttc ctcggttatc gcgctgtgcg tatttatgaa
    25201 gaatacgcct cgctgttcac cacacaacta cggtcgatcc tgcgcgcctc cgctcacggc
    25261 agcctgaaaa tcatgatccc gatgatctcc tcaatggaag agatcttatg ggtgaaagaa
    25321 aaactggcgg aagccaaaca gcaactgcgt aacgaacaca ttccgtttga tgagaagatc
    25381 cagcttggca ttatgctgga agtaccgtcg gtgatgttca tcatcgatca atgctgcgaa
    25441 gagattgatt tctttagtat tggtagtaat gacctgacgc aatatctgct ggcagtggat
    25501 cgcgataacg ctaaggttac tcgtcactac aacagcctga atccggcatt cttgcgggcg
    25561 ctcgattacg ccgtgcaggc ggtgcatcgc cagggcaaat ggattggtct gtgcggtgag
    25621 ctgggagcga aaggttccgt gctgccgttg ctggtcggct tagggctgga tgaactcagc
    25681 atgagcgcac catcaattcc ggcggcgaaa gcgcggatga cgcaacttga tagccgtgag
    25741 tgccgcaagt tgctcaacca ggcaatggcc tgccgtactt cgctggaagt ggaacacctg
    25801 ctggcgcaat tccgcatgac ccaacaggac gcaccgctgg tcaccgccga gtgcatcacg
    25861 ctggaaagtg actggcgcag caaagaagaa gtgctcaaag gcatgaccga taacctgctg
    25921 ctggcgggcc gctgccgcta tccgcgtaaa ctggaagccg acttatgggc gcgcgaggcc
    25981 gttttctcta ccggtctggg ctttagtttt gccattccac acagcaaatc agaacacatt
    26041 gagcaatcca ccatcagcgt ggcgcgtctg caagcgccgg tgcgctgggg cgatgatgaa
    26101 gcgcaattca tcattatgtt aaccctgaac aaacacgctg cgggcgatca gcacatgcgc
    26161 attttctctc gcctcgctcg ccgcatcatg cacgaagaat tccgtaacgc gctggttaac
    26221 gccgcctctg ccgacgctat cgccagcctg ctgcaacatg aactggaact gtaaaaggaa
    26281 acatcatgga actgtatctg gacaccgcta acgtcgcaga agtcgaacgt ctggcacgca
    26341 tattccccat tgccggggtg acaactaacc cgagcattat cgctgccagc aaggagtcca
    26401 tctgggaagt tctgccgcgt ctgcaaaaag cgattggtga tgagggcatt ctgtttgctc
    26461 agactatgag tcgtgacgcg cagggtatgg tggaagaagc gaagcgcctg cgcgacgcca
    26521 ttccgggcat tgtggtgaaa atcccggtga cttccgaagg tctggccgcc attaagatgc
    26581 tgaaaaaaga gggtattact acgcttggca ccgcagtgta cagtgctgca caagggttac
    26641 tggccgcgct ggcaggggca aaatacgttg ctccgtatgt taaccgcgta gatgcccagg
    26701 gcggggacgg cattcgtacg gttcaggagc tgcaagcgct gttagaaatg cacgcaccag
    26761 aaagcatggt gctggcggcc agctttaaaa cgccgcgtca ggcgctggac tgtttactgg
    26821 caggatgtga atccatcacc ctgcccttag atgtagcgca acaaatgctc aacacccctg
    26881 cggtagagtc agctatagag aagttcgaac acgactggaa tgccgcattt ggcactactc
    26941 atctctaaag gagcaattat ggaccgcatt attcaatcac cgggtaaata catccagggc
    27001 gctgatgtga ttaatcgtct gggcgaatac ctgaagccgc tggcagaacg ctggttagtg
    27061 gtgggtgaca aatttgtttt aggttttgct caatccactg tcgagaaaag ctttaaagat
    27121 gctggactgg tagtagaaat tgcgccgttt ggcggtgaat gttcgcaaaa tgagatcgat
    27181 cgtctgcgtg gcatcgcgga gactgcgcag tgtggcgcaa ttctcggtat cggtggcgga
    27241 aaaaccctcg atactgccaa agcactggca catttcatgg gtgttccggt agcgatcgca
    27301 ccgactatcg cctctaccga tgcaccgtgc agcgcattgt ctgttatcta caccgatgag
    27361 ggtgagtttg accgctatct actgttgcca aataacccga atatggtcat tgtcgacacc
    27421 aaaatcgtcg ctggcgctcc tgcacgtctg ttagcggcgg gtatcggcga tgcgctggca
    27481 acctggtttg aagcacgcgc ctgttcccgt agcggcgcta ccactatggc gggcggcaag
    27541 tgcacccagg cggcgctggc actggcagaa ctgtgctaca acactctgct ggaagaaggc
    27601 gaaaaagcga tgcttgccgc cgaacagcat gtagtaaccc ctgcgctgga acgcgtgatt
    27661 gaagcgaaca cctatttaag cggtgttggt tttgaaagcg gcggactggc ggcggctcat
    27721 gcggtgcata acggcctgac cgctatcccg gacgcgcatc actattatca cggtgaaaaa
    27781 gtggcattcg gtacgctgac gcagctggta ctggaaaacg cgccggttga ggaaatcgaa
    27841 accgtagctg catttagcca tgcggtaggt ttgccaataa ctctcgctca actggatatt
    27901 aaagaagatg tcccggcgaa aatgcgaatt gtggcagaag cggcatgtgc agaaggtgaa
    27961 accatccaca acatgcctgg cggcgcgacg ccagatcagg tttacgccac tctgctggta
    28021 gccgaccagt acggtcagcg tttcctgcaa gagtgggaat aacctactcc aaactcccgg
    28081 cttgtccggg agtttgaacg caaaattgcc tgatgcgcta cgcttatcag gcctacgcaa
    28141 tctctgcaat atattgaatt tgcgtgcttt ttaggccaga taaggcgttc acgccgcatc
    28201 cggcactctg tgccagtaat ctgaaactcc tacgttgttc aggagttttt tatccgcttc
    28261 tggacatttt ctctacagaa caatcgttag cccggaaggt cgaatctgtg actcttattt
    28321 tcacggacga accagatgaa agcttcactg gcgctgctca gcctgctaac ggcatttacc
    28381 agccactcct taaaatctcc cgccgttcca ccaaccgtgg tacaaatcca ggccaatacc
    28441 aaccttgcca tcgcagacgg tgccagacag caaatcggca acacgctatt ttacgatccg
    28501 gcgtatgtgc ggcttaccta tcctggcggt gatgtcccgc aagaacgcgg tgtatgttcc
    28561 gatgtggtga tccgtgcatt gcgcagccag aaggtcgatt tgcagaaact ggttcacgaa
    28621 gatatggcga agaattttgc cgagtacccg caaaaatgga agttaaagcg cccggacagc
    28681 aacatcgatc accgtcgggt gcctaatctg gaaacctggt ttagccgcca caacaaaaca
    28741 cgccccatca gtaaaaatgc cggtgactat caagcgggcg atattgtctc ctggcgatta
    28801 gataacgggc tggcgcatat tggggtggtg tcagatggct tcgcccgcga cggtacgcca
    28861 ctggtgatac ataacattgg cgcaggcgcg caggaagaag atgtgctgtt tagctggcgg
    28921 atggtggggc attatcgtta ttttgttaaa taagcgatcg ccccacatga agaaaaaatt
    28981 cagatgcttt ttacactgac agcttctttt ttcttacggc tcaccagcgc cagtgccagc
    29041 acaatcagca caataccgct accttcaacg gcccccggat tctcaccgag cagccaccag
    29101 gaaaagagta cgccgcaaac gggaacggcc agcgtgctta agctggcaat actggcaggc
    29161 aagtttttca atacaaacaa ccataagctc cacgccagcg ccgtcgccag aatcgcactg
    29221 taggccagcg cccagaacac ggtgggctgc cagtcaattt cacgttgcgg caccagtaaa
    29281 gcgaccacac tcatcaccag cgccgcatag agcatctgcc aggatgttaa cgataataaa
    29341 tccacgcgcg gatgacgggt gtataggcgt ttagcaacaa tcgcgctcgc cccccaacta
    29401 acaccggaga ggattgccag catggcactt ttcatcgaag agaaatcgag ttgccacggc
    29461 tgcaacacca aaaataagcc gaaagcggca atcagaatcg cgaaatattg cccacgtcgc
    29521 aggcgttcac cgagaaacaa cgcggcgaaa atcaccaccc agaacggcat ggtatagctc
    29581 aggatcgcca ccttccccgc acctccgctg accaacgccc actgcgccag accaaccatc
    29641 ccgcaggttt gtaacagggc aatggctaag gtgtatttaa acggcgtcgg gtgcattccg
    29701 cgaccacgta ataaaaggac gatgaataaa acgagagcgc cgaaaatgca gcgtaaggcg
    29761 gtaaagtcga aggcaccgat gtaactggtg acttgcttca tgaaaatcca gctataactc
    29821 cagataagtg tgagcacaac caggccactg attgccagtg ggttgctctt tcctgcggca
    29881 gacatgagag atccagtgtg tagttttcct gtggacacta tacgccggta aagaaacttc
    29941 agcgactgcc tgaaagacag tcactgaaga aggtcagatt acagcaggtc gaaacggtcg
    30001 aggttcatca ctttcaccca tgccgctacg aagtctttaa caaacttctc gtgggcatcg
    30061 ctgctggcgt aaacttccgc taccgcacgc aggacagagt tagaaccaaa taccagatcc
    30121 gcacggctgg ctgtgtattt cacttcgccg gtttcgcggt cacgtccttc gaacagctct
    30181 ttcgattcgt cagtcgcttt ccactcgtaa cgcatatcca gcaagttcac gaagaagtca
    30241 ttgctcaata cgccaacgcg gtcagtgaag acgccgtttt tgctgctatc gaagttggca
    30301 cccagtacac gcatcccgcc caccagcgca gtcatttccg gcgcggtcag cgtcagttgc
    30361 tgtgctttgt cgatcagcag tgactcggtg gtggaaacgt ccagacgagc gcgatagtta
    30421 cggaaaccgt cagcaattgg ctccagcagc tcaaacatct caatgtcagt ctgatcctga
    30481 cgcgcatcaa cgcgacccgg cgcaaacggt acatgaatgc tcaaacctgc ggcgcttgcg
    30541 gctttctcaa caccaaccac accagccagc acgatgatat ccgccagcga ggctttacca
    30601 gactctttct ggattttctc cagaacaggc agagcacgaa cggctgcggc gttcacatcc
    30661 cagtcgcgct gcggcattaa tgccagacgc gcaccgttgg caccaccgcg tttgtcgcca
    30721 ccacggaagg tagaagcaga tgcccaggcc accgatacca gctcactaac agacagacca
    30781 gaatccgcaa tcgcgaattt cagatcgata atgtcctgct cggtcgggtt gtagatcggc
    30841 tgcggcagcg gatcttgcca gatcagatct tctttcggca cttccggccc gatgtagcga
    30901 gatttcggcc ccatatccct gtgcgtcagt ttgaaccagg cacgggcaaa ggcttcgttg
    30961 aacgcctgcg gatcgttgag gaaacgacga gagatcttct cgaactcagg atcaaaacgc
    31021 agcgtcaggt cggtcaccag cattgtcggt ttacgtttct tcgacggatc gaacggatcc
    31081 gggataattt ccggtgcgtc taccgcttcg aactggattg ctccagccgg actgcgggtc
    31141 tgtacccact catatttgaa caggttctcg aagaaatagt tgctccactg ggtcggcgtc
    31201 tgggtccaga caacttccag accagaggta atggcatctg cgccaacgcc gctgccgtaa
    31261 gtgctcgccc agcctaaacc ttgttcttca atcggtgcag cttctggatc aggacctaca
    31321 tttgatgtcg gaccggcacc gtgagtttta cccagcgtat gaccacccgc aatcagcgcc
    31381 acggtttctt cgtcgttcat gcccatgttg ccgaaggtcg cacggatagc tgctgccgca
    31441 gaaagcggtt cgccgctgtg atccgggcct tccgggttaa cgtaaatcag acccatctcg
    31501 gttgcaccca gcggtgcttt cgccagcgct tccggatgac ggtgagtcag ccaggctttt
    31561 tcatcacccc agttaacatc cagatccggt tcccagacgt cttcacgacc ggcaccaaaa
    31621 ccgaaggtac ggaagccgga gttttccagc gccacgttac ctgcgaggat aaacaggtcg
    31681 gcccaggaga ttttctgacc atatttctgt ttgattggcc acaacaggcg acgcgcttta
    31741 tcaaggctta cgttatccgg ccaggagttc agcggtgcaa aacgttgctg accacgaccc
    31801 gcgccgccgc gtccatcgat tgaacggtaa gtacctgcgc cgtgccaggc catacgaata
    31861 aacagaccgg cgtagctgcc ccagtcggct ggccaccacg gctgagattc tgtcagcagg
    31921 gctttcagat cttttttcag gccgtagtaa tctaatttgc tgaattcttt gcggtagtca
    31981 aagtcctcac ccagcgggtt agaacgatta gaatgttggt ttaacaggtc aacacggagt
    32041 tgatttggcc accagtcgcg agtggttgtg cccgcccccg cgctctggtc gtgaccgccc
    32101 tgatggaacg ggcatttgcc agtggctgtc gtgttatgga tatcgtctga cgtgctcatc
    32161 aatgtgctcc cctctacagt gttaccgtta cgatacacag cgttagagag aagttataat
    32221 tgaattaatc cacggatgcg atagttgaga tcttacatat tgttggttaa agagatgtag
    32281 gtcaaattga tcgtaattaa gcttttttga ttatgtccga attcggacaa atgctttata
    32341 aaaaagggtt ttagcttcat atccttcaag taatgaggga gaaaacaagg ctgacaacct
    32401 tattttcccg ccctcatttc gaggcagcat tttgtgctct gtttaaaatt tgtgatcact
    32461 gtgtgatttt cacaaaaacc acactattta taaaccaggt cgaacaccca gcgtatggca
    32521 aatcgcgtaa ctcatttcag cgcggttaag cgtatagaag tggaaatctt tcactccttc
    32581 acggcttaaa atcttcacca tatccatggc aatattcgcg cccaccagtt tgcgggtttc
    32641 ggcatcatca tccaggccgt cgaacatttg cgccatccac gccggaatac gcacgttggt
    32701 catatcggca aatttcttcg cctgtttaaa gttagatacc ggcaaaattc ccggaataat
    32761 ttccacatca atgcccgccg atacacagcg gtcacgaaaa cgcaggtagc tttcgacatc
    32821 gaagaagaac tgagtaatcg cgcggttggc tccggcatcg actttgcgtt tcagattaag
    32881 caaatccgcc tgagcgcttt ttgcttccgg gtgaacttcc ggatacgccg ccacggagat
    32941 atcgaaatct gccacttctt ttaatagcgt caccaggtca gaagcataca tttctggctt
    33001 accacttccc ggcggcagat cgccacgcag cgccacgata tgacgaatac cgttattcca
    33061 gtagtcgcgt gcaatggtgc gcaactcgtc gggcgtcgca tcaatgcaag taagatgcgg
    33121 tgccgcttcc agaccagtgc gatctttaat gcctttaata atgctgtgcg tacggtcgcg
    33181 ctcgccggag ttcgcgccat aggtcaccga tacaaacttc ggtttcaggc tgctaaggcg
    33241 atcgatggag ttccacaggg tctgctccat ttcactggta cgcggcggga aaaactcgaa
    33301 cgaaacgtta atctgcccct ggacttctgc caggcgctga ttcagggcat cccgctggct
    33361 ggcgtgaaaa aagctcatac cttacctcat caatcgcttg tagttatatg ttgtgttgtg
    33421 cacatctatc cgtttagacg tccagatgta aagatgaagg aaaagccgaa gggcgtcaac
    33481 cgaaaaatga ccaatgatgg tgaggaaaaa tcagggaaga tgaaaaaact tcaggatggt
    33541 aagaaaaaga aaatccggta tgcaaagcaa accggactgc aaatataaac taaccatgta
    33601 cttattgctt cttgccggat tcgtcgtaaa cgcttaatcc ggcctaatcc tatgataatt
    33661 caatatattt cattagaaac cataaacccg aaaacatgag taccgggcat tattaaattt
    33721 ctgaaattac aacaactgtg ccagccggtt gatatccgac tgaatcgccc cggcggtgac
    33781 gtcgcgcccc gcgccaggcc cacggatcac cagcgggttg tcgcgatacc agcggctttc
    33841 gatggcaaag acgttatcgc acggcagcag tgatgccagc ggatggtctt cacgcaccgc
    33901 ctccacgccc acacgcgctt tgccgttggc atcgaaacgc gccacgtagc gcagcaccag
    33961 ccccatttcg cgggccgctt ccagccgttg caccatctgc tcgttaagtt catcgccatt
    34021 ttcaaagaaa tggtcgatgc tgccgccttc gcaatgagca ggcaccagcg attccacacg
    34081 tacctggtcc ggttcaatgt tgtaacccgc ttcacgcgcc agaattacca gcttgcgcat
    34141 tacgtctttg ccggagaggt cgtcacgcgg atcaggctcg gttaagccct gctgccacgc
    34201 ctgatccacc agctcggtaa acggcacgct accgtcgaat tgcaggaaca gccaggagag
    34261 cgtgccggag aagatcccgc tgatcgacaa aatagtatcg ccgctgtcga tcagatcgcg
    34321 cacggtgtgg ttgatcggca agcccgcacc gacggtggca ttgtacagcc agtgacgccc
    34381 ggttttttcg aaggcgtcgt ggatctggcg atatttattg ctgtcgctgg ctcccgccag
    34441 tttgttggcg ctgataacgt ggaaaccgtg gctggcgaaa tcaagatact gatcagcaag
    34501 ctgctggctg gcggtaacgt ccagcaccac taaatcatca tacggatggg cgcgcatcca
    34561 caggaacaac gactcttcat cctgctcaac cgcttcatcg ttgaagaagg ctaacgcgcg
    34621 gctggcgtcc agcccgtcat agctcaacag gctgcggcgg ctgtccacca cacctgccag
    34681 cacaaactca aagccggtac gtgccgaaag cgtgctctgc tcacgggcga acagttccag
    34741 ccaacgggaa ccgatattgc ccttaccgaa caataccagg ccgatgcgtt tttctgcgcg
    34801 gaagacggac tgatgcagcc cctgaatcag gctttcggtc gggccggtgc gcagtactgc
    34861 caccaggctg atgccgtcat cggactgcca ggtaaattcg accggctggc ctttcagttg
    34921 ctgccagaag cggtggcaat gcagcgggtt acgggtgacg cctgcaccga ccatcgccac
    34981 cagcgccagc ccctgacgca ggcgcagttc gccaggtaat cccgcttcgt cgaggatttt
    35041 cagcgcactg tcggccactt ctgaggtgta gcaaaattgc agcaactggc gatcgttatg
    35101 tacgccaacc gccagcgggc gtacctgcgc gcgtttcagg atttggtcga tctctttatg
    35161 cgccagtttg aaatcctgac tggcgggcac ctgaaactca atcaaacaga catcatcgtg
    35221 gctggtgaca atacgcgcac cagtaccgga ggccagcacg cgttcaatgc gcgtggaacc
    35281 ttgatccggc gtgtagctac agcgcagttg caggtcgatt tcgctgccag aaaccggctg
    35341 taaagtacgg gcgtgaagaa cgggagccgc caggcgcgcc agttcgctgg cctcatccag
    35401 acgcagcaac ggcagcaggc aggcatcttt cactttacgc gggtcggcac tgtatacccc
    35461 ggcgacgtcg ctccagatgg ttacgcgaga aacacccgcc agcgcaccga tttgtgtcgc
    35521 ggaatagtcg gaaccgttac gccccagcag caccgtttca ccggcgttgt tgcggctgat
    35581 aaatccggtc accaccagac gtttgcccgg atgttgcacc agcagctgtt gcagcaacgg
    35641 gtaagaaagc ccttcatcaa cctgcggttg tgcggcgcgt tcagcgcgta aaaactcgcg
    35701 ggcatcaagc caggccgctg gcagcccttg ttgattaagt accgcagaca tcaggcgtgc
    35761 cgaccatact tccccgtggc ccaccacttc cgcatacact gcgtcgttaa taccgctgtc
    35821 gagcagcgcc gccaggcgct caaggtcgct gacaaaagcg ctaatgaggc tatcagcttc
    35881 ttcagcgggt agcagaccgc taatcagatc gcactgatag cgacgcagcg tttgttgaac
    35941 ctgatgcgca gagagacgat cggtctggct tagtttcaac cagttaatca actggttagt
    36001 ggtgctaccg gcggcggaaa ccaccatcat atcgtcaggc tgagagtact ccgccataat
    36061 gcccgcaaca cgcaaataac acttcacatc agccagacta ctgccaccaa atttatgcag
    36121 ttgacgacct ttcgcccctg cctgcgcaat cacactcatt tttacccctt gtttgcagcc
    36181 cggaagccat tttccaggtc ggcaattaaa tcttcgccat cttcaatacc ggtggagata
    36241 cgcagcagcg tctcggagat cccggcggca gcacgcgctt ctggtgccat gcctgcatgt
    36301 gtcatggttg cggcgtgaga gattaaactt tccactcccc ctaatgattc cgccagcgta
    36361 aacaacgaca gcccgcccag gaaacgacgc agcgtctgct catcgccatc cagttcaaaa
    36421 ctcaacattg cgccaaagcc tttttgctgg cgcgcggcaa tttcatgccc ctgattttcc
    36481 ggcagcgacg ggtgatacag ttttttcacc aacggctggg tttgcagata tttcacaatc
    36541 gcctgcgcgt tgcgctgggc cagctccata cgcggcacca gcgttcgcaa cccgcgtagc
    36601 agcagatagc tgtcaaacgc gccgcccgtc acgccaatat tgtttgtcca ccaggcaagt
    36661 tcagtgacaa cgtccgggtc tttagcaatc accacgccag ccaccacgtc agagtgaccg
    36721 ttcagatatt tcgtacatga atgcaacacc agatcggcac ccaatgccag cggattttgt
    36781 aatgccgggc ttaagaaggt gttatccacc acgctcaccg ccccgacttc ccttgccaga
    36841 tggcagattt tcgcaatatc cacgacgcgt aacaatggat tacttgggct ttctaccagt
    36901 accagtttag gtttttctgc cagcgctgcc cgtaatgcct gttcatcgcc ttgatcaaca
    36961 aacaacacgc gatagcaacc gcgtttcgcc agactgtcga acaggcgata gctaccgccg
    37021 tagcagtcgt gcggcgcaac cagcagatcg ccaggtttca aaaagacggt cgttaccaag
    37081 tgaatcgcgg acatgccggt attagtaagt actgcgccag caccgccttc cagttctgcc
    37141 agcgcacgct gaaccacatc gcgcgttggg ttgccgcgac gcgagtaatc atgcgcgcgc
    37201 ggttcattaa atccggtaaa gttataggtg ctggaaagat ggatgggagg gacaacgcaa
    37261 ccatactgtt cgtcgtcatt taacccgcta cgcactgcga tggtggcctg tttacgcgtc
    37321 atgtgatgaa gtttcctggg ctttgtcggt gaaatgtcag gcaccagagt aaacattgtg
    37381 ttaatggacg tcaatacatc tggacatcta aacttcttta cgtatagatt gagcaaatcc
    37441 caaatagccg ttaaaattat atgcattatc acgccgacag gtgcattaca cgatgtcacg
    37501 gtaacgcctg tacggtaaac tatgcgggtt tacggtcagt acccacataa attgtgtggt
    37561 ctggtctcaa tttattgacg aagaggatta agtatctcat ggctgaatgg agcggcgaat
    37621 atatcagccc atacgctgag cacggcaaga agagtgaaca agtcaaaaag attacggttt
    37681 ccattcctct taaggtgtta aaaatcctca ccgatgaacg cacgcgtcgt caggtgaaca
    37741 acctgcgtca cgctaccaac agcgagctgc tgtgcgaagc gtttctgcat gcctttaccg
    37801 ggcaaccttt gccggatgat gccgatctgc gtaaagagcg cagcgacgaa atcccggaag
    37861 cggcaaaaga gatcatgcgt gagatgggga ttaacccgga gacgtgggaa tactaaagca
    37921 aaaaagagcg gcgcggagtg gaatcgcctg atgcgctacg cttatcaggc ctacgtcata
    37981 ttgcaattta ttgaatttgc acgaacttgt aggccggata aggcgttcac gccgcatccg
    38041 gcataaacaa cgagcacgtt gtctgcgacc caccgctttt tatacatgga cgtttaacta
    38101 tgaaaaacag gctgctgatc ctcagcctgc tggtttctgt acctgccttt gcctggcagc
    38161 cacaaaccgg cgacatcatc tttcagatct ctcgctcatc gcaaagtaaa gcgatccaac
    38221 tggcgaccca ttccgattat agccacaccg gtatgctggt gatacgcaac aaaaagccct
    38281 acgtttttga agcggtcggc ccggtgaaat acaccccgct caagcagtgg atcgcccatg
    38341 gtgaaaaggg caaatacgtt gttcgccgcg ttgaaggcgg actgagtgtt gaacaacagc
    38401 aaaaactggc gcaaacggta aaacgttatc tcggtaaacc gtatgatttc agcttctcat
    38461 ggagcgacga tcgccagtac tgttcggaag tggtgtggaa ggtttaccag aacgcgctgg
    38521 gaatgcgcgt gggcgagcag cagaagttga aagagttcga tctcagcaac ccgctggtcc
    38581 aggctaagct caaagaacgc tacggcaaaa atattccgct tgaggaaacg gtagtttcac
    38641 cacaagccgt tttcgacgcg ccacaactca ccacggttgc caaagagtgg ccgctgtttt
    38701 cgtggtaatg gatgatgaaa aaaataattc ccgccgtagt ctgtttgttg ctttgtagtt
    38761 gcacgacctt tccgcaaact gtcgctccgg taaacggtga tgcctccaat tagttgaatt
    38821 aaggatataa tactcgcttt taaggttgtt tcatggtcac agttaacctt cattgccccc
    38881 gttgccagtc cgttcaggtt taccgtcacg ggcagaaccc aaaaagacat gatcgattcc
    38941 gcggccgtga ctgtcaccgg gtatttcagc tcagttactg ttacgagccc cgtaaaccgg
    39001 gagttaaaga ccaaatcgct gaaatgactt tcaacggtgc cggggttcgc gatactgccc
    39061 gtacgctgaa aatcggcatt aatacagtca tccgaacttt aaaaaactct cgccacgaag
    39121 aataacgtca tccccggtcg ctcatgctga tgtggcactc atctgcgaac ttagtcagca
    39181 atggagcttt gtcggcagta aagcgcgaca gcactggctc tggtacgtgt acaacacgaa
    39241 aactggtggt gttctggcct acacttttgg cccccggact gacgaaacct gtcgtgaatt
    39301 gctggcgctg cttacccttt taccatcggc atgttgacca ctgacgaatg gggtagttac
    39361 accagagagt taccgaagga aaagcatctg actggtaaga tttttactca gcgcattgag
    39421 cgcaacaatc tgaccctgag aacccgaatc aaacgtctgg cccgcagaac catctgtttc
    39481 tcgcgctctg tagaacttca tgaaaaagtc atcggtgctt ttatcgaaaa tatatgttct
    39541 actaattgga gtcatcaccc ttctgatgag ctttccttgg atgattacca gactgaatac
    39601 acagccaaag atttttacct cattctgctc ttttttctca aatgacatat attatatttt
    39661 acatcat
//
LOCUS       DADMJB010000016        37818 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.016, whole genome shotgun sequence.
ACCESSION   DADMJB010000016 DADMJB010000000
VERSION     DADMJB010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 37818)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37818)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37818
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.016"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..378
                     /locus_tag="JN078_000771"
     CDS             <1..378
                     /locus_tag="JN078_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY9040061.1"
                     /translation="ICSNKHPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDEKF
                     MNRKISFRGSSLLTIINSIAVTDLLGIVPYELYNSHRDFLNLKEIKLEHPLPSIKLYI
                     SYNKSSLNNLVFSRFIDRLNESF"
     gene            525..2042
                     /locus_tag="JN078_000772"
     CDS             525..2042
                     /locus_tag="JN078_000772"
                     /inference="COORDINATES: protein motif:HMM:NF014273.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3440 domain-containing protein"
                     /protein_id="HAY9040062.1"
                     /translation="MSIYKIPLPLNILEAARERITWTLNTLPRVCVSFSGGKDSGLML
                     HLTAELARQMGKKICVLFIDWEAQFSCTINYVQSLRELYTDVIEEFYWVALPLTTQNS
                     LSQYQPEWQCWEPDVEWVRQPPQDAITDPDFFCFYQPGMTFEQFVREFAEWFSQKRPA
                     AMMIGIRADESYNRFVAIASLNKQRFADDKPWTTAAPGGHSWYIYPIYDWKVADIWTW
                     YANHQSLCNPLYNLMYQAGVPLRHMRICEPFGPEQRQGLWLYHVIEPDRWAAMCARVS
                     GVKSGGIYAGHDNHFYGHRKILKPEHLDWQEYALLLLNSMPEDDRIKAINEIRMAIHQ
                     VSPFREEPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLQKSIEIDGFTQPIVVTHTDK
                     NAMEIVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQIT
                     AMSEIVRELSQLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQYSRAWTVK"
     gene            complement(2043..3192)
                     /gene="ybdL"
                     /locus_tag="JN078_000773"
                     /pseudo
     CDS             complement(2043..3192)
                     /gene="ybdL"
                     /locus_tag="JN078_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308666.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-oxo-acid transaminase"
     gene            3301..4389
                     /gene="hcxA"
                     /locus_tag="JN078_000774"
     CDS             3301..4389
                     /gene="hcxA"
                     /locus_tag="JN078_000774"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxycarboxylate dehydrogenase HcxA"
                     /protein_id="HAY9040063.1"
                     /translation="MPHNPIRVVVGPANYFSHPRSFNHLNDFFTDEQLSRAVWIYGKR
                     AIAAAQTKLPPAFGLPGAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTA
                     KALARRLGLPFVAVPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIIL
                     NAPQQYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINNAQAIRDVLLNSSEQALA
                     DQQNQQLTQSFCDVVDAIIAGGGMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGT
                     KVAYGILVQSALLGQDDVLAQLTGAYQRFHLPTTLAELEVDINNQAEIDKVIAHTLRP
                     VESIHYLPVTLTPDTLRAAFEKVESFKA"
     gene            complement(4399..4596)
                     /locus_tag="JN078_000775"
     CDS             complement(4399..4596)
                     /locus_tag="JN078_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HAY9040064.1"
                     /translation="MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTY
                     EEFFRERQDARYGGKGGARCC"
     gene            complement(4778..6883)
                     /gene="cstA"
                     /locus_tag="JN078_000776"
     CDS             complement(4778..6883)
                     /gene="cstA"
                     /locus_tag="JN078_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein CstA"
                     /protein_id="HAY9040065.1"
                     /translation="MNKSGKYLVWTVLSVMGAFALGYIALNRGEQINALWIVVASVCI
                     YLIAYRFYGLYIAKNVLAVDPKRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPL
                     VGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAG
                     VIALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLALFMGIYLRYLRPGRI
                     GEVSVIGLVFLIFAIISGGWVAESPTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLL
                     APRDYLSTFLKIGTIVGLAVGILIMRPTLTMPALTKFVDGTGPVWTGNLFPFLFITIA
                     CGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVSACIIDPGVYFA
                     MNSPMAVLAPAGTADVVASAAQVVSSWGFSITPDTLNQIASEVGEQSIISRAGGAPTL
                     AVGMAYILHGALGGMMDVAFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVVSPG
                     LKRTDSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLC
                     AVVLFKMKRQRYAWVALVPTAWLLICTLTAGWQKAFSPDAKVGFLAIANKFQAMIDSG
                     NIPSQYTESQLAQLVFNNRLDAGLTIFFMVVVVVLALFSIKTALAALKDPKPTAKETP
                     YEPMPENVEEIVAQAKGAH"
     gene            complement(7064..7477)
                     /gene="entH"
                     /locus_tag="JN078_000777"
     CDS             complement(7064..7477)
                     /gene="entH"
                     /locus_tag="JN078_000777"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proofreading thioesterase EntH"
                     /protein_id="HAY9040066.1"
                     /translation="MIWKRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDT
                     RTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCVVGTELNATHHRPVSEGKVRGVC
                     QPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVLG"
     gene            complement(7480..8226)
                     /gene="dhbA"
                     /locus_tag="JN078_000778"
     CDS             complement(7480..8226)
                     /gene="dhbA"
                     /locus_tag="JN078_000778"
                     /EC_number="1.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706451.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase"
                     /protein_id="HAY9040067.1"
                     /translation="MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQY
                     PFATEVMDVADAGQVAQVCQRLLAETERLDVLINAAGILRMGATDQLSKEDWQQTFAV
                     NVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGL
                     ELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEI
                     ANTILFLASDLASHITLQDIVVDGGSTLGA"
     gene            complement(8226..9083)
                     /gene="entB"
                     /locus_tag="JN078_000779"
     CDS             complement(8226..9083)
                     /gene="entB"
                     /locus_tag="JN078_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin biosynthesis bifunctional
                     isochorismatase/aryl carrier protein EntB"
                     /protein_id="HAY9040068.1"
                     /translation="MAIPKLQAYALPESHDIPQNKVDWAFELQRAALLIHDMQDYFVS
                     FWGENCPMMEQVIANIAALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGLTRS
                     PEQQKVVDRLTPDADDTVLVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTT
                     ATDAFMRDIKPFMVADALADFSRDEHLMSLKYVAGRSGRVVMTEELLPAPVPASKAAL
                     REVILPLLDESDEPFDDDNLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAW
                     WKLLSREVK"
     gene            complement(9097..10707)
                     /gene="entE"
                     /locus_tag="JN078_000780"
     CDS             complement(9097..10707)
                     /gene="entE"
                     /locus_tag="JN078_000780"
                     /EC_number="2.7.7.58"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2,3-dihydroxybenzoyl)adenylate synthase"
                     /protein_id="HAY9040069.1"
                     /translation="MSIPFTRWPEEFARRYREKGYWQDLPLTDILTRHAASDSIAVID
                     GELQLSYRELNQAADNLACTLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL
                     ALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLHNDSGE
                     HNLQDAINHPADGFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC
                     QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVT
                     ALVPPAVSLWLQALAEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGM
                     AEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFR
                     GYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENL
                     LLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIAEFKLPDRVE
                     CVDSLPLTAVGKVDKKQLSQWLASRASA"
     gene            complement(10717..11892)
                     /gene="entC"
                     /locus_tag="JN078_000781"
     CDS             complement(10717..11892)
                     /gene="entC"
                     /locus_tag="JN078_000781"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase EntC"
                     /protein_id="HAY9040070.1"
                     /translation="MDTSLAEEVQQTMATLAPNRFFFMSPYRSFTTSGCFARFDEPAV
                     NGDSPDSPFQQKLAALFADAKVQGIKNPVMVGAIPFDPRQPSSLYIPESWQSFSRQEK
                     QASARRFTRSQSLNVVERQAIPEQTTFEQMVARAAALTATPQVDKVVLSRLIDITTDA
                     AIDSGVLLERLIAQNPVSYNFHVPLADGGVLLGASPELLLRKDGERFSSIPLAGSARR
                     QPDEVLDREAGNRLLASEKDRHEHELVTQAMKEVLRERSSELHVPSSPQLITTPTLWH
                     LATPFEGKANSQENALTLACLLHPTPALSGFPHQAATQVIAELEPFDRELFGGIVGWC
                     DSEGNGEWVVTIRCAKLRENQVRLFAGAGIVLASSPLGEWRETGVKLSTMLNVFGLH"
     gene            12267..13223
                     /gene="fepB"
                     /locus_tag="JN078_000782"
     CDS             12267..13223
                     /gene="fepB"
                     /locus_tag="JN078_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe2+-enterobactin ABC transporter
                     substrate-binding protein"
                     /protein_id="HAY9040071.1"
                     /translation="MRLAPLYRNALLLTGLLLSGIAAVQAADWPRQITDSRGTHTLES
                     QPQRIVSTSVTLTGSLLAIDAPVIASGATTPNNRVADDQGFLRQWSKVAKERKLQRLY
                     IGEPSAEAVAAQMPDLILISATGGDSALALYDQLSTIAPTLIINYDDKSWQSLLTQLG
                     EITGHEKQAAERIAQFDKQLAAAKEQIKLPPQPVTAIVYTAAAHSANLWTPESAQGQM
                     LEQLGFTLAKLPTGLNASQSQGKRHDIIQLSGENLAAGLNGESLFLFAGDQKDADAIY
                     ANPLLAHLPAVQNKQVYALGTETFRLDYYSAMQVLERLKALF"
     gene            complement(13227..14477)
                     /gene="entS"
                     /locus_tag="JN078_000783"
     CDS             complement(13227..14477)
                     /gene="entS"
                     /locus_tag="JN078_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin transporter EntS"
                     /protein_id="HAY9040072.1"
                     /translation="MNKQSWLLNLSLLKTHPAFRAVFLARFISIVSLGLLGVAVPVQI
                     QMMTHSTWLVGLSVTLTGGAMFVGLMVGGVLADRYERKKVILLARGTCGIGFIGLCLN
                     ALLPEPSLLAIYLLGLWDGFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSV
                     ISPMIGGLLLATGGVAWNYGLAAAGTFITLLPLLSLPALPPPPQPREHPLKSLLAGFR
                     FLLASPLVGGIALLGGLLTMASAVRVLYPALADNWQMSAAEIGFLYAAIPLGAAIGAL
                     TSGKLAHSARPGLLMLLSTLGSFLAIGLFGLMPMWILGVVCLALFGWLSAVSSLLQYT
                     MLQTQTPEAMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGV
                     LLLLVLVELRRFRQTPPQVTASDS"
     gene            14588..15592
                     /gene="fepD"
                     /locus_tag="JN078_000784"
     CDS             14588..15592
                     /gene="fepD"
                     /locus_tag="JN078_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-siderophore ABC transporter permease"
                     /protein_id="HAY9040073.1"
                     /translation="MSGSVAVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEAF
                     SGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGAS
                     FAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAA
                     VLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALN
                     SLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGA
                     DHRWSLPVTLLATPALLLFADIIGRVIVPGELRVSVVSAFIGAPVLIFLVRRKTRGGA
                     "
     gene            15589..16581
                     /gene="fepG"
                     /locus_tag="JN078_000785"
     CDS             15589..16581
                     /gene="fepG"
                     /locus_tag="JN078_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-enterobactin ABC transporter permease"
                     /protein_id="HAY9040074.1"
                     /translation="MIYVSRRLLITCLLLISACVVAGIWGLRSGAVTLETSQVFAALM
                     GDAPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWS
                     GVLVAMVLFGQDLTAIALAAMVGGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRAMLVA
                     FNTWLLLKASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLE
                     MGDDTACALGVSVERSRLLMMLVAVVLTAAATALAGPISFIALVAPHIARRISGTARW
                     GLTQAALCGALLLLAADLCAQQLFMPYQLPVGVVTVSLGGIYLIVLLIQESRKK"
     gene            16578..17393
                     /gene="fepC"
                     /locus_tag="JN078_000786"
     CDS             16578..17393
                     /gene="fepC"
                     /locus_tag="JN078_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-enterobactin ABC transporter ATP-binding
                     protein"
                     /protein_id="HAY9040075.1"
                     /translation="MTESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGC
                     GKSTLLRTLSRLMTPAHGHVWLDGEHIKHYASKEVARRIGLLAQNATTPGDITVQELV
                     ARGRYPHQPLFTHWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ
                     ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALR
                     EGKIVAQGAPKEIVTAELIERIYGLRCMIIDDPVAGTPLVVPLERTAPSTANS"
     gene            complement(17390..18523)
                     /gene="fepE"
                     /locus_tag="JN078_000787"
     CDS             complement(17390..18523)
                     /gene="fepE"
                     /locus_tag="JN078_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen length regulator"
                     /protein_id="HAY9040076.1"
                     /translation="MSSLNIKQGSDAHFSEYPLASPSSNEIDLLNLIEVLWRAKKTVM
                     AVVFAFACAGLLISFILPQKWTSSAVITPAEAIQWQDLEKTFTKLRVLDLDVNIDRGG
                     AFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNAS
                     KKKDEPSLYTSWTLSFTAPTSKEAQTVLSGYIDYISALVVKESIENVRNKLEIKTQFE
                     KEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGAD
                     GIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKANVNDVNFTPFKYQLSPSLPVKKD
                     GPGKAIIVILSALIGGMVACGSVLLRYAMASRKQDAMMADHLV"
     gene            complement(18738..22619)
                     /gene="entF"
                     /locus_tag="JN078_000788"
     CDS             complement(18738..22619)
                     /gene="entF"
                     /locus_tag="JN078_000788"
                     /EC_number="6.3.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin non-ribosomal peptide synthetase
                     EntF"
                     /protein_id="HAY9040077.1"
                     /translation="MSQHLPLVAAQPGIWMAEKLSDLPSAWSVAHYVELTGEVDAPLL
                     ARAVVDGLAQADTLRMRFTEDNGEVWQWVDDALTFELPEIIDLRTNIDPHGTAQALMQ
                     ADLQQDLRVDSGKPLVFHQLIQVADNRWYWYQRYHHLLVDGFSFPAITRQIANIYCTW
                     LRGEPTPASPFTPFADVVEEYQQYRESEAWQRDAAFWAEQRRQLPPPASLSPAPLPGR
                     SASADILRLKMEFTDGEFRQLATQLSGVQRTDLALALTALWLGRLCNRMDYAAGFIFM
                     RRLGSAALTATGPVLNVLPLGIHIAAQETLPELATRLAAQLKKMRRHQRYDAEQIVRD
                     SGRAAGDEPLFGPVLNIKVFDYQLDIPGVQAQTHTLATGPVNDLELALFPDEHGDLSI
                     EILANKQRYDEPTLIQHAERLKMLIAQFAADPALLCGDVDIMLPGEYAQLAQINATQV
                     EIPETTLSALVAEQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSV
                     AVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTDDQLPRF
                     ADVPDLTNLCYNAPLKPQGSAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRL
                     LWMQNHYLLTGEDVVAQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFF
                     AEYGVTTTHFVPSMLAAFVASLTPQTARQSCATLKQVFCSGEALPADLCREWQQLTSV
                     PLHNLYGPTEAAVDVSWYPAFGEELAQVRGSSVPIGYPVWNTGLRILDAMMHPVPPGV
                     AGDLYLTGIQLAQGYLGRPDLTASRFIADPFVPGERMYRTGDVARWLDNGAVEYLGRS
                     DDQLKIRGQRIELGEIDRVMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSG
                     LPLDTSALQAQLRETLPPHMVPVVLLQLPLLPLSANGKLDRKALPLPELKAQAPGRAP
                     KAGSETIIAAAFASLLGCDVQDADADFFALGGHSLLAMKLAAQLSRQVARQVTPGQVM
                     VASTVAKLATIIDAEEDSTRRMGFETILPLREGNGPTLFCFHPASGFAWQFSVLSRYI
                     DPQWSIIGIQSPRPNGPMHTAANLDEVCEAHLATLLEQQPHGPYYLLGYSLGGTLAQG
                     IAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGS
                     TSTELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAWSPWIAEL
                     DIYRQDCAHVDIISPGAFVKIGPIIRATLNR"
     gene            complement(22616..22834)
                     /locus_tag="JN078_000789"
     CDS             complement(22616..22834)
                     /locus_tag="JN078_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbtH family protein"
                     /protein_id="HAY9040078.1"
                     /translation="MAFSNPFDDPQGAFYILRNAQGQFSLWPQQCALPAGWDIVCQPQ
                     SQESCQQWLEAHWRTLTPANFTQLQEAQ"
     gene            complement(22837..24039)
                     /gene="fes"
                     /locus_tag="JN078_000790"
     CDS             complement(22837..24039)
                     /gene="fes"
                     /locus_tag="JN078_000790"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin esterase"
                     /protein_id="HAY9040079.1"
                     /translation="MTALKVGSESWWQSKHGPEWQRLNDEMFEVTFWWRDPQGSEEYS
                     PIKRVWVYITGVTDHHQNSQPQSMQRIAGTDVWQWTTQLNANWRGSYCFIPTERDDIF
                     SAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGRGHAVSALEMPQAPLQPGWDCPQA
                     PEIPAKEIIWKSERLKNSRRVWIFTTGDATAEERPLAVLLDGEFWAQSMPVWPVLTSL
                     THRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKAIAPFSDRADRTV
                     VAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRGGQQEGVLLEKLKAGEVSAEG
                     LRIVLEAGIREPMIMRANQALYAQLHPIKESIFWRQVDGGHDALCWRGGLMQGLIDLW
                     QPLFHDRS"
     gene            24282..26522
                     /gene="fepA"
                     /locus_tag="JN078_000791"
     CDS             24282..26522
                     /gene="fepA"
                     /locus_tag="JN078_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore enterobactin receptor FepA"
                     /protein_id="HAY9040080.1"
                     /translation="MNKKIHSLALLVNLGIYGVAQAQEPTDTPVSHDDTIVVTAAEQN
                     LQAPGVSTITADEIRKNPVARDVSEIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPE
                     NTLILIDGKPVSSRNSVRQGWRGERDTRGDTSWVPPEMIERIEVLRGPAAARYGNGAA
                     GGVVNIITKKGSGEWHGSWDAYFNAPEHKEEGATKRTNFSLTGPLGDEFSFRLYGNLD
                     KTQADAWDINQGHQSARAGTYATTLPAGREGVINKDINGVVRWDFAPLQSLELEAGYS
                     RQGNLYAGDTQNTNSDAYTRSKYGDETNRLYRQNYSLTWNGGWDNGVTTSNWVQYEHT
                     RNSRIPEGLAGGTEGKFNEKATQDFVDIDLDDVMLHSEVNLPIDFLVNQTLTLGTEWN
                     QQRMKDLSSNTQALTGANTGGAIDGVSATDRSPYSKAEIFSLFAENNMELTDSTIVTP
                     GLRFDHHSIVGNNWSPALNISQGLGDDFTLKMGIARAYKAPSLYQTNPNYILYSKGQG
                     CYASAGGCYLQGNDDLKAETSINKEIGLEFKRDGWLAGVTWFRNDYRNKIEAGYVAVG
                     QNAVGTDLYQWDNVPKAVVEGLEGSLNVPVSETVMWTNNITYMLKSENKTTGDRLSII
                     PEYTLNSTLSWQAREDLSMQTTFTWYGKQQPKKYNYKGQPAVGPETKEISPYSIVGLS
                     ATRDVTKNVSLTGGVDNLFDKRLWRAGNAQTTGDLAGANYIAGAGAYTYNEPGRTWYM
                     SVNTHF"
     gene            26697..27317
                     /gene="entD"
                     /locus_tag="JN078_000792"
     CDS             26697..27317
                     /gene="entD"
                     /locus_tag="JN078_000792"
                     /EC_number="6.3.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415115.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin synthase subunit EntD"
                     /protein_id="HAY9040081.1"
                     /translation="MKTTHTSLPFAGHTLHFVEFDPANFCEQDLLWLPHYAQLQHAGR
                     KRKAEHLAGRIAAIYALREYGYKCVPAIGELRQPVWPAEVYGSISHCGATALAVVSRQ
                     PIGVDIEEIFSAQTATELTDNIITPAEHERLADCGLAFSLALTLAFSAKESAFKASEI
                     QTDAGFLDYQIISWNKQQVIIHRENEMFAVHWQIKEKIVITLCQHD"
     gene            complement(27439..27591)
                     /locus_tag="JN078_000793"
     CDS             complement(27439..27591)
                     /locus_tag="JN078_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Hok family toxin"
                     /protein_id="HAY9040082.1"
                     /translation="MLTKYALAAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVL
                     AYEPKK"
     gene            28044..29162
                     /locus_tag="JN078_000794"
     CDS             28044..29162
                     /locus_tag="JN078_000794"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HAY9040083.1"
                     /translation="MPLPDFHVSEPFTLGIELEMLVVNPPGYDLSQDSSILIDAVKNK
                     ITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQKVVLQAAADHHLEICGGGTHPF
                     QKWQRQEVCDNERYQRTLENFGYLIQQVTVFGQHVHVGCASGDDAIYLLHGLSRFVPH
                     FIALSAASPYMQGTDTRFASSRPNIFSAFPDNGPMPWVSNWQQFEALFRCLSYTTMID
                     SIKDLHWDIRPSPHFGTVEVRVMDTPLTLSHAVNMAGLIQATAHWLLTERPFKHQEKD
                     YLLYKFNRFQACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPSAHKIGASSAIEAL
                     HRQVVSGLNEAQLMRDFVADGGSLIGLVKKHCEIWAGD"
     gene            29228..29476
                     /locus_tag="JN078_000795"
     CDS             29228..29476
                     /locus_tag="JN078_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1158 domain-containing protein"
                     /protein_id="HAY9040084.1"
                     /translation="MKHPLETLTTAAGILLMAFLSCLLLPAPALGLTLAQKLVTMFHL
                     MDLSQLYTLLFCLWFLVLGAIEYFVLRFIWRRWFSLAD"
     gene            29541..29909
                     /locus_tag="JN078_000796"
     CDS             29541..29909
                     /locus_tag="JN078_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HAY9040085.1"
                     /translation="MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSS
                     ELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLIND
                     SWNLVVDGLAKRDQKRVRPG"
     gene            30003..30655
                     /gene="nfsB"
                     /locus_tag="JN078_000797"
                     /pseudo
     CDS             30003..30655
                     /gene="nfsB"
                     /locus_tag="JN078_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308643.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-insensitive NAD(P)H nitroreductase"
     gene            30763..32010
                     /locus_tag="JN078_000798"
     CDS             30763..32010
                     /locus_tag="JN078_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HAY9040086.1"
                     /translation="MQDLISQVGDLAGIEIDHTTSMVMIFGIIFLTAVVVHIILHWVV
                     LRTFEKRAIASSRLWLQIITQNKLFHRLAFTLQGIIVNIQAVFWLQKGTEAADILTTC
                     AQLWIMMYALLSVFSLLDVILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLL
                     IGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGT
                     VIDIGLTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIRF
                     LDEDEMQRLNKAHLLKPYLTSRHQEINEWNRQQGSTESILNLRRMTNIGTFRAYLNEY
                     LRNHPRIRKDMTLMVRQLAPGDNGLPLEIYAFTNTVVWLEYESIQADIFDHIFAIVEE
                     FGLRLHQSPAGNDIRSLAGAFKQ"
     gene            complement(32078..33454)
                     /gene="pheP"
                     /locus_tag="JN078_000799"
     CDS             complement(32078..33454)
                     /gene="pheP"
                     /locus_tag="JN078_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine transporter"
                     /protein_id="HAY9040087.1"
                     /translation="MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLG
                     IGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFL
                     SGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGET
                     EFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVI
                     MFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYICSLVVLLALYPWVEVKSN
                     SSPFVMIFHNLDSNEVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTR
                     VSHRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRF
                     RAAMRRQGRETQFKALLYPFGNYLCIAFLGMILLLMCTMDDMRLSAILLPVWIVFLFV
                     AFKTLRRK"
     gene            complement(33556..36699)
                     /gene="cusA"
                     /locus_tag="JN078_000800"
     CDS             complement(33556..36699)
                     /gene="cusA"
                     /locus_tag="JN078_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(+)/Ag(+) efflux RND transporter permease
                     subunit CusA"
                     /protein_id="HAY9040088.1"
                     /translation="MIEWIIRRSVANRFLVLMGALFLSIWGTWTIINTPVDALPDLSD
                     VQVIIKTSYPGQAPQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTD
                     PYWARSRVLEYLNQVQGKLPAGVSAELGPDATGVGWIYEYALVDRSGKHDLADLRSLQ
                     DWFLKYELKTIPDVAEVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAG
                     GSSIELAEAEYMVRASGYLQTLDDFNHIVLKASENGVPVYLRDVAKVQVGPEMRRGIA
                     ELNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRA
                     IDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMPFQGLNANIMS
                     LGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPAL
                     FISLLIITLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGK
                     IPPESSNPLNRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQIN
                     EGDLLYMPSTLPGISAAEAASMLQKNDKLIMSVPEVARVFGKTGKAETATDSAPLEMV
                     ETTIQLKPQDQWRPGMTMDKIIEELDNTVRLPGLANLWVPPIRNRIDMLSTGIKSPIG
                     IKVSGTVLADIDAMAEQIEEVARTVPGVASALAERLEGGRYINVEINREKAARYGMTV
                     ADVQLFVTSAVGGAMVGETVEGIARYPINLRYPQSWRDSPQALRQLPILTPMKQQITL
                     ADVADVKVSTGPSMLKTENARPTSWIYIDARDRDMVSVVHDLQKAIVEKVQLKPGTSV
                     AFSGQFELLERANHKLKLMVPMTLMIIFVLLYLAFRRVGEALLIISSVPFALVGGIWL
                     LWWMGFHLSVATGTGFIALAGGAAEFGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEA
                     LYHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRIAAPMIGGMITAPLLSLFI
                     IPAAYKLMWLHRHRVRK"
     gene            complement(36711..>37818)
                     /gene="cusB"
                     /locus_tag="JN078_000801"
     CDS             complement(36711..>37818)
                     /gene="cusB"
                     /locus_tag="JN078_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Cu(+)/Ag(+) efflux RND transporter periplasmic
                     adaptor subunit CusB"
                     /protein_id="HAY9040089.1"
                     /translation="RKILFWYDPMYPNTRFDKPGKSPFMDMDLVPKYADEESSASGVR
                     IDPTQTQNLGVKTATVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVG
                     DKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLI
                     ATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDPVWVTAAIPESIAWL
                     VKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATRTLQLRLEVDNADEALKPGMNAWL
                     QLNTASEPMLLIPSQGLIDTGSEQRVITIDADGRFVPKRVAVFQASQGVTALRSGLAE
                     GEKVVSSGLFLIDSEANISGALERMRSESATHAH"
BASE COUNT         9071 a        10548 c         9637 g         8562 t
ORIGIN      
        1 atttgtagta ataagcatcc gcgaattact gacaatagca cttatgaaca aattatggca
       61 gaagagttca cccaattaat atccaaatca gcaggagttg atgatattca aatggaaata
      121 gacgagaagt ttatgaatcg caaaatttca tttcgtggtt cctctttgct gacaataatt
      181 aatagcattg cagttacaga tttactggga atagtcccct atgaacttta taactcccac
      241 cgtgactttc ttaatttaaa agagataaaa ctagaacatc cgttaccttc aataaagctt
      301 tacatttcct ataataaatc ttctttaaat aatttggtgt tctcccgatt tattgaccgt
      361 ctaaatgaga gtttttgata tataactaca gacagctact ataactttca tctatttatt
      421 cacagcgcga atgaaaaata aaacactctg ctttacagtg tttactttat aattaacagt
      481 cttatctcac tgttcaccct gtaacgttca gagagcgtct tcagatgtct atttataaaa
      541 ttcctcttcc gctcaatatt ctggaagctg cacgagagcg tattacctgg acactcaaca
      601 ccctaccccg cgtttgtgtc tcattttctg gcggcaaaga ctctggttta atgctgcatc
      661 tgacagccga acttgcccga caaatgggca aaaaaatctg cgttttgttt atcgactggg
      721 aggcgcaatt ctcttgcact attaactatg ttcagtccct gcgcgagttg tacaccgatg
      781 tcatcgaaga gttttactgg gttgcgctcc cgcttacgac gcaaaattcc ctttcacaat
      841 accaacccga atggcagtgc tgggaacctg atgtcgaatg ggtgcgtcag cccccgcaag
      901 atgcgataac cgatcctgac tttttctgct tttaccagcc aggcatgacc ttcgaacaat
      961 ttgtacgtga gtttgccgaa tggttttcac aaaaacgtcc ggcggcgatg atgatcggca
     1021 tccgtgcgga tgagtcctac aaccgttttg tcgccatcgc cagtttaaat aaacaacgtt
     1081 ttgccgacga taaaccatgg actacggccg caccaggcgg tcatagctgg tacatttacc
     1141 ccatttacga ctggaaagtg gctgatatct ggacctggta tgcaaatcat caaagtctct
     1201 gcaacccact gtataaccta atgtatcagg caggcgttcc tctgcgtcat atgcgaattt
     1261 gcgaaccttt tggcccggag caacgacaag gattatggct ctatcacgtt atcgaaccgg
     1321 atcgctgggc tgctatgtgc gcacgagtca gcggggtaaa aagtggcggc atttacgccg
     1381 gacatgacaa tcatttctat gggcatcgga aaatcctcaa gccagaacat ttagactggc
     1441 aagaatatgc attattgctg ctcaatagca tgccggaaga tgatcgcatc aaagcgatta
     1501 atgaaatccg catggcgatc catcaggtta gcccctttcg tgaagagcca gtggattgcg
     1561 ttctgtgggt taaaaacagc caacttatgc ctaatgatta caacccaaac aacgtggcac
     1621 cacccgaaaa aaaactgctg caaaaatcca ttgaaataga tggttttacc caacccattg
     1681 tggtcacaca tacggataaa aatgccatgg aaatcgtgga tggttttcac cgccatgaaa
     1741 ttggtaaagg ctcatcatca ttaaaattac gcttaaaagg ttatttgccg gtgacctgtc
     1801 tggaaggtac gcgtaatcaa cgcatcgccg cgactattcg tcataatcgc gctcgtggac
     1861 gccatcaaat caccgccatg tcggaaatcg tccgtgaact tagccagttg ggatgggacg
     1921 ataataaaat tggcaaagag ctgggaatgg acagcgacga agtgctgcgc ctgaagcaaa
     1981 ttaacggcct gcaagagttg tttgccgacc gtcaatattc ccgcgcctgg acggttaaat
     2041 agctaaagct ggcgcaggcg ttcagctgct gccagcaacg tcgattcctt cttggcaaaa
     2101 cagagacgaa tcagtttatg tgggaaggga tcggcgcaaa acaccgacag cggaatcgcc
     2161 gccacgccgt gctcccgcgt cagccactgg caaaactcaa catcatccag ggtagaaacc
     2221 tcgctgtaat ccaccagcaa aaagtatgta ccttcacacg gtaaaatctc cagccggctt
     2281 tcatttaaag cattcaccag aatatcgcgc ttctggcgat aaaagtccgg taacgcaaga
     2341 taatgctcag gttctgcacg tagcatatca gcaagcgcca gctgtgccgg ggtattcacc
     2401 gaaaaggtca gatactgatg taccttgcga atttcggcgc tgatgggcgc tggcgcaaca
     2461 caataaccca ctttccagcc ggtcatatga tagatcttgc caaatgaaga aaccgccact
     2521 gcccgctcac gcagctgcgg atgcgccagc acactggcat ggccctgttg tgaaaagttg
     2581 atgtgctcgt agacttcatc gctaatgaca aaaatctcgt gcccggcgat cgcctgccac
     2641 aaagcggcga aatcagcctg ctgccagaca gttgcactgg ggttatgcgg agtgttgagg
     2701 atcaccagtc tggtgcgctc gcttaataat gcggcaaatt cctgccagtc aaggtggttg
     2761 cagtgccata cgcttcacta ttcccccaga aagcgcgatg gcgggggcgt aactgtcata
     2821 gctgggatca aaacaaatca cttcatcgcc attgcgcacc agtgcggtaa tcgccgcgta
     2881 taacgcttcc gtcgcccctg ccgttacggt gatatcgcta tcggcatctg gttgatagcc
     2941 atacaaacgt tccgttttct gagcaatcgc ctcgcgcaag gcctgcacgc cggtcatggg
     3001 cgcgtattgg tttgccccct gggcaacgtg gtacgccagc cgctcctgta aatagcgcgg
     3061 accatcaaaa tcaggaaagc cttgcgacag gttaatcgcc tggtgttgct gcgccagcgc
     3121 gctcatctgg gtgaaaatag tggtgccaag ttgtggaagt ttgctttgtg gaatcagagg
     3181 gttatttgtc atttttattg tacctgacga agttgcgtgt tgaaggcact ataacacgat
     3241 gctagtattt ggcaatcaag acgtttagat gtctaaataa aacaataagg acaacacaac
     3301 atgcctcaca atcctatccg cgtggtcgtc ggcccggcta actacttttc acatccaaga
     3361 agtttcaatc acctgaacga ttttttcact gatgaacaac tttctcgcgc ggtgtggatc
     3421 tacggcaaac gcgccattgc tgcggcgcaa accaaacttc cgccagcgtt tggacttcca
     3481 ggggcaaagc atattttgtt tcgtggtcat tgcagcgaaa gcgatgtaca gcaactggcg
     3541 gctgagtccg gtgacgatcg cagcgtggtg attggcgtcg gcggcggcgc actgctcgac
     3601 accgcgaaag ccctcgcccg ccgtctcggt ctgccatttg ttgccgttcc gacgatcgcc
     3661 gctacctgcg ccgcctggac accgctctcc gtctggtata acgatgccgg acaggcgctg
     3721 cattatgaga ttttcgacga cgccaatttt atggtgctgg tggaaccgga gattatcctc
     3781 aatgcaccgc aacaatatct gctggcgggg atcggtgaca cgctggcgaa atggtatgaa
     3841 gcggtggtgc tggctccgca accagaaacg ttgccgctaa ccgtgcggct ggggatcaat
     3901 aatgcgcagg ccattcgcga cgtcttgtta aacagtagcg aacaggcact tgccgatcag
     3961 caaaatcagc agttaacgca atcattttgc gatgtggtgg atgctattat tgctggtggt
     4021 gggatggtcg gtggtctggg cgatcgtttt acgcgtgtgg cggcggctca tgccgtgcat
     4081 aacggtctga ctgtcctgcc gcaaaccgag aagtttcttc acggcaccaa agtcgcttac
     4141 ggaattctgg tgcaaagcgc cttgctgggt caggatgatg tgctggcgca attaaccggg
     4201 gcgtatcagc gttttcatct gccgactacg ctggcggagc tggaagtgga tatcaataat
     4261 caggcggaga tcgacaaagt gattgcccac accttgcgcc cggtggagtc cattcattac
     4321 ctgccagtca cgctgacacc agatacgttg cgtgcagcgt tcgaaaaagt ggaatcgttt
     4381 aaagcctgac gtgcaaattt agcagcagcg cgcgccgcct tttccaccgt agcgcgcgtc
     4441 ctgccgctca cggaaaaact cctcgtaggt catcggcgtt tgatcgggat ggttaacccg
     4501 catatgttcg acatagttgt cgtaatcagg cataccaatc atcagcttcg ccgcctgacc
     4561 taaatatttt ccggcttttg ccagtgaatc aaacatcttg gcctccgcta accatgttgc
     4621 tgaaagagtg ccggatgcgg cgtgaacgct ttatccggcc tacaaatgct atcaacgcac
     4681 tcggtcagtc ccctcgcccc atcggggaga gggttagggt gagggggaac cctcggcact
     4741 atgccaacat tcgccaacat cccccctcac tctgacttta gtgcgcgcct ttcgcctgcg
     4801 ctacgatctc ctcgacattt tccggcatcg gctcatacgg cgtttctttc gccgttggct
     4861 tcggatcttt caatgccgca agtgccgtct taatcgagaa cagtgccaga accaccacga
     4921 ccaccataaa gaagatggtt aacccggcat ccagacggtt gttgaacacc agttgcgcca
     4981 gctgtgactc agtatactgc gacggaatat tgccgctgtc gatcattgcc tggaacttgt
     5041 tagcaatggc caggaagccg actttcgcat ccgggctaaa cgctttctgc cagccagcgg
     5101 tcagggtaca aatcagcagc caggccgttg gtaccagcgc cacccaggcg taacgttgac
     5161 gtttcatctt gaacaacacc acggcacaga gcatcagcgc catccctgcc agcatctggt
     5221 tggcaatacc aaacagcggc cacagagtgt taataccgcc cagcggatcg accacgccct
     5281 gatggaggaa gtagccccac gccagtacgc acagcgccgt tgccagcagg ttagcaggca
     5341 gtgaatcggt ccgcttcagg ccaggagaca ccacgcccag cagatcctgc aacataaagc
     5401 gcgcagcacg cgtacccgca tctaccgccg tcagaataaa cagagcttca aacagaatgg
     5461 cgaagtgata ccagaacgcc acatccatca taccacccag cgcaccgtgc aggatgtaag
     5521 ccatccccac cgccaacgtc ggcgcaccgc ccgcacggga aatgatcgac tgttcaccca
     5581 cttcgctggc aatctggttg agcgtatctg gtgtaatgct aaagccccag ctactcacca
     5641 cctgcgcggc agaagcgacc acatccgccg tccctgctgg agccagcacc gccattgggc
     5701 tgttcatggc aaagtaaacg cccggatcga tgatacaggc ggaaaccagc gccataatcg
     5761 ccacgaagga ttccattaac attccaccgt agccgataaa acaagcctgc ccttcgttcg
     5821 ccagcatctt cggcgtggtg ccggaagaga tcagcgcatg gaagccagac accgcgccac
     5881 aggcgatggt gataaacagg aacgggaaca ggttaccggt ccataccggg ccagtgccat
     5941 cgacaaattt ggtcagcgca ggcatggtca gcgtcgggcg cataatcaaa atgcctaccg
     6001 ccagaccgac gatcgtcccg attttcagga aggtagagag gtagtcacgc ggggccagca
     6061 gcaaccacac cggcagcacc gccgccacaa aaccgtaacc caccagcatc caggtcagct
     6121 gcacgccggt aaagtcaaag tacggtgccc aggtcggact ttctgccacc cagccgccag
     6181 agataatggc gaaaatcagg aataccagac cgatgaccga cacttcacca atacgccccg
     6241 gacgcagata gcgcaggtag atccccataa acagcgccag cggaatggtg aacgcaacgg
     6301 tatacgttcc ccacgggcta tgagtcaggg ctttcaccac gatcatcgcc agtactgcaa
     6361 ggataatgac catgatcata aagcaggcca ccagcgctat caccccggcg gttggcccca
     6421 tctcttcttt gaccagctca cccagcgatc gaccgtcacg gcgcgtagaa acaaacagca
     6481 ccatgaaatc ctgcaccgca ccggcgagaa ccaccccggc gagtagccag atcatccccg
     6541 gcaggtagcc catttgcgct gccagcaccg gcccaaccaa cggacctgct ccggcgatgg
     6601 ccgcaaaatg gtgaccgaac agcactttct tgtccgtcgg cacatagtcc agcccgtcgt
     6661 tatggcgcac cgctggcgtc atacgcttcg ggtcaaccgc cagcacattt ttggcgatat
     6721 acaacccata aaaacggtaa gcgatcagat agatacagac cgacgccacc acaatccaca
     6781 gcgcgttgat ctgttcccca cgatttaaag caatgtatcc cagagcaaat gctcccatta
     6841 cagagagcac tgtccagacg aggtatttcc ctgatttgtt catagttgtt atccgtgtgc
     6901 gtgtccatag agatgttaca ttttgtttct ataacatctt tgtacgattt aacaacacgg
     6961 taactatgta aatcggagtt gaaaccaata tttaacttaa caatgttaac tcgatcactc
     7021 cgttaaccga gttttcctgc aatctcattt aattctgtcg ggctcatccc aaaactgccg
     7081 tacccagccg acaagtgcag caacgccgcc cctgttcatc gaaaacgacg atttcccagc
     7141 tctgattttg ccgcccaaga tgcagcggct ggcagacgcc gcgtaccttg ccttcagaca
     7201 ccgggcgatg atgggtggcg ttaagttccg tgcccaccac acactgcccg tcacgggtca
     7261 tcataaatcc ggccatcgat cccagcgttt cagccagcgc cgccgacgcg ccgccatgca
     7321 gcaggccaaa cggctgatga gtacgggtat caaccggcat ttcggcttcc agcacatcat
     7381 ctcccagacg ggtatacaca attcccagat gcgccaccat tgtgttatcg ctggtggcgt
     7441 tcagttcgtc gagcgttaaa tggcgtttcc agatcatgct tatgccccca gcgttgagcc
     7501 gccatcgacc acaatatcct gtagggtgat atggctggcg aggtcagagg cgaggaacaa
     7561 aatcgtgttg gcgatctctt gtggacgggc gattttcccc agcggaatgc cgagtttaaa
     7621 ctgctcgcca aagccgcgaa tacgctgttc ttcggcgtca tcgctcaccc acagcgtgcg
     7681 ttgcatatcg gtgtcggtgg agccaggcga aaccacatta cagcgcacgc cgctacccgc
     7741 cagttccagc ccgacgctca acgccaggct tttcagcgcc gctttcgatg cgccataagc
     7801 actcatacca atacgcggcg tgtgtgcggc gtcggacgcc acagtgacaa tcgccccgcc
     7861 ccgctgacgg cgaaactggt tcatggtttg ctggaacagg ttaaacgcac cgccgacgtt
     7921 aaccgcaaaa gtctgctgcc agtcctcttt actgagctga tcggtcgcgc ccatgcgcaa
     7981 aattcccgcc gcattgatca gcacgtccag tcgctccgtt tcagctaaca gtcgctgaca
     8041 tacctgcgcc acctgcccgg cgtcggcaac atccattact tcggtcgcaa agggatattg
     8101 ctcctgagtg aacgcttgat caaaacctgt aactttcgct cccgcctcaa caaacgccag
     8161 cgccgtggcg tagccgatac ctttacctgc gccggttacc cagacatttt taccgctgaa
     8221 atccattatt taacctcgcg ggagagtagc ttccaccagg cgtcgatggt cgggtttttc
     8281 gccagcatga caaagtcgat atcaccatgc actttgcgcc agcgcgccgc cagcgccatc
     8341 atgcgcaccg aatccagacc gtagtcgatc aggttgtcgt catcgaacgg ttcatcggac
     8401 tcgtccagca acggcaggat aacctcacgc agcgccgctt tgctggcggg gacaggtgct
     8461 ggcagtaatt cttcagtcat caccacccgg ccagaccgcc cggccacata tttcagcgac
     8521 atcaaatgct cgtcacggct gaaatcggcc agcgcatccg ccaccataaa cggtttaata
     8581 tcgcgcataa atgcgtcggt tgcggtggtc atacagccaa tgtgggcata taccccggta
     8641 ataatcagct ggttacgtcc actctctttg agcatttgct ccagcggaga acgatgaaac
     8701 gcgctgtagc gccacttcac cagcaccgtg tcgtcggcat ctggcgtcag gcgatccacc
     8761 accttttgct gttccggcga acgggtcagg cccggccccc acatatcatt caacagcgcc
     8821 cgatcttcat cgctctgctc tttcggctgg gcggtgtaat aaactgggat attgtgctgt
     8881 ttgcagtagt cgcgcagcgc agcaatattc gcgatcacct gctccatcat cgggcagttc
     8941 tcgccccaga agctgacaaa atagtcctgc atatcatgga ttaacaacgc ggcacgttgc
     9001 agttcaaagg cccagtcaac tttattctgc ggaatatcgt gagactccgg cagtgcgtaa
     9061 gcctgtaatt ttggaatagc catcgtgttc tctccttcag gctgatgcgc gtgacgccag
     9121 ccactgactt aattgttttt tatcgacttt cccgaccgcc gtcagcggaa gtgaatctac
     9181 acactccacg cgatccggta atttaaattc ggcaataccc tgttcacgca ggaaacgacg
     9241 cacctgcacc gcgcgcagcg gctcttttac caccagataa gcacagcttt tttcgcccat
     9301 cagctcatct tccatgctca ccagtgcggc atagatcacc gccggatggc gcagcagcag
     9361 gttttcgatc tcttcggcag cgatcttctc gccgccacgg ttgatctgat ctttctcgcg
     9421 cccctgcacg gtgatgtaac cctctggatc aatagagatc agatcgccgg aacagtaaaa
     9481 accgttggca tcaaaggcgc tggcattgtg ctgcggactt ttgtaataac cgcggaaggt
     9541 gtacggcccg cgcgtcatca ggcgtccgac ttccccttgc ggcagtggat ttccttcggc
     9601 atcggcaacc cacacttcat cgtccggaca cattgggtaa ccctgggtat ggataatttt
     9661 ctccgcgcta tcatcaagac gggtgtagtt caccagccct tccgccatgc caaacacctg
     9721 ctgcaactgg cagccaatct cagcgggaat acgcgccgca agggtggcag aaagacgtgc
     9781 gccgccgacc tgtaacagtt tcagcgaggc aagctgcgcc cggctttcgc cttcagccag
     9841 cgcctgcaac cacaggctga ctgccggcgg caccagcgcg gtgacgttca cctgatgttt
     9901 ttcaatcaat gggaagcaaa gcgtagcgct gggatcggcc gccagaacaa ccgttcctcc
     9961 ggcaagaaag acgcccagcg atcctggcga actcatggcg tagttatgag ccgccgggat
    10021 cgcgcacagg tagcgcgtct gttgtgtgaa ctgacaaatc tcgacgctac gacgcacgct
    10081 gtagtagtag tcgttatgag tgcgcgggat cagcttcggt gtaccggtgg tgccgccgga
    10141 aagctggaaa taggccactt catcagcagg tgatggcgtg gcagtaaaac cgtctgccgg
    10201 atggttaatc gcatcctgca agttatgctc accgctgtcg ttgtgcagtt gcaccacgcg
    10261 aatggaggaa tgttctgtga cgaaagtatt gaggaaatca tccccgctaa acagcgcatg
    10321 ttggcgatcg gcaatcagca atgcgggttc aatctggctg gcataggcgt tcagttcact
    10381 acgctgatgg ctgaacaacg ccagcaccgg cgcaacgccc agtttcagca gcgcgaaaaa
    10441 ggtaatatac aattcagcga cgttacccag ttgtaccagc gcggtttcac caggtttaat
    10501 gccctgacgg cgtaaagtac acgcgaggtt atccgccgcc tgattcagct cccggtaact
    10561 caactgtagc tcgccgtcga taaccgcgat gctgtcactc gcagcgtggc gagtcagaat
    10621 gtcggtcagc ggcaaatcct gccagtagcc tttttcccga tagcgacggg caaactcttc
    10681 cggccagcgg gtgaatggaa tgctcatcct cgctccttaa tgcaatccaa aaacattcaa
    10741 catggtagaa agtttgacgc ctgtttcgcg ccactcaccc aacggtgacg acgcaagcac
    10801 aatccccgct ccggcaaaca gacgcacctg attttcccgc agcttcgcgc agcggatggt
    10861 caccacccat tcgccgttac cttcgctgtc acaccaaccc acaatgccgc caaacagttc
    10921 gcggtcgaac ggctccagtt cagcaataac ctgagtcgcg gcctgatgcg ggaaaccgct
    10981 cagcgcgggg gtcggatgca gcagacaggc cagagtcagt gcgttttctt gcgaattcgc
    11041 tttaccttca aagggagttg cgagatgcca cagcgtcggc gtggtaatca attgtggaga
    11101 ggagggaacg tgtaactcac tactgcgttc gcgcagtacc tctttcatcg cctgagtcac
    11161 cagttcatgt tcatggcgat ctttttctga cgccagcaga cgattacccg cttcgcgatc
    11221 gagcacttca tccggctgac gacgcgcgga accggctaac ggaatggagc taaaacgctc
    11281 gccgtcttta cgtagcagca gttccgggct ggcccccagc aggacgccac catcagccag
    11341 cgggacatgg aagttgtaac taaccgggtt ttgcgcaatc aaccgttcca gcaatacgcc
    11401 actatcaatg gcggcgtcag tggtgatatc aatcaaccgt gacaacacca ctttgtcaac
    11461 ctgcggcgtg gcggtaagtg cggcagcgcg ggcaaccatc tgttcaaacg tggtttgttc
    11521 cggaattgcc tggcgttcca ccacattcag cgactggctg cgggtgaaac ggcgggcgga
    11581 agcttgtttt tcctgacggg agaacgactg ccaggattca ggaatataca gcgacgaagg
    11641 ctgacgtgga tcgaagggaa tcgccccgac catcaccgga tttttgatgc cctgcacttt
    11701 ggcatcggca aacagcgcgg cgagtttttg ctggaaggga ctgtcgggcg aatccccgtt
    11761 cacagccggt tcatcgaagc gggcgaaaca tcctgacgtc gtaaaactgc ggtacggcga
    11821 cataaagaaa aagcgattgg gcgcaagtgt tgccatggtc tgctgtactt cctcagccag
    11881 tgacgtatcc atatcatcct ccacaaaatg ataaaggctt taataatgat tatcatttat
    11941 attttcggtc gctaacctaa aagcaaacgc gcactatgtc aactcttgag gtaacgcaat
    12001 ctgcaactcg gggttgcatc tggttgtggt tacaatgaaa atgagaagca ttattgatgg
    12061 attcgcataa gcgcaatgtg atgtcctgcg ccgttcttcc ccctctccct tccagggaga
    12121 gggctggggt gagggtcaat attcgcacca gtgctggctg ctcccatcac cctaaccctc
    12181 tccccaaagg ggcgagggta cggatagtgc gctttgtcga atttgtcatt acgcccttaa
    12241 ccttattaat aacaggaagc tgatttgtga gactcgcccc gctctaccgc aacgcccttc
    12301 tattaacagg acttttgctt tccggaatag ccgcagttca ggccgccgac tggccgcgtc
    12361 agattactga cagccggggc actcataccc tggaaagcca gccgcagcgt attgtttcca
    12421 ccagcgtcac cctgaccggc tcactgctgg cgattgatgc tccggtgatt gccagcggcg
    12481 cgaccacgcc aaataaccgc gtcgcggatg accagggctt tttacgccag tggagcaagg
    12541 tggcgaaaga acgcaaacta caacggctct atatcggcga accgagcgcc gaagccgttg
    12601 ccgcgcaaat gccggatctg attttaatta gcgcaaccgg cggggattcg gcgctggcgc
    12661 tgtatgatca gctttccacc atcgccccga cattaatcat caattacgac gacaaaagct
    12721 ggcagtcgct gttaacgcag cttggcgaaa ttaccgggca tgagaaacaa gcggcagagc
    12781 ggattgcaca gtttgataag caactggcag cggcgaaaga gcaaatcaaa ttaccgccgc
    12841 agccggtcac tgctattgtc tataccgccg ctgcacacag tgccaatctc tggacgccgg
    12901 aatcagcaca agggcagatg ctggaacaac tcggctttac gctggcgaaa ttgcccacag
    12961 ggttaaacgc cagccaaagc cagggcaaac gccatgacat cattcagctt agtggagaaa
    13021 atctggctgc agggttaaat ggcgagtcac tattcctgtt cgccggtgat cagaaagacg
    13081 ccgatgcgat ttatgccaat ccactgctcg cgcacctgcc cgcagtacaa aacaagcagg
    13141 tttatgcgct gggaaccgag acgttccgcc tggattacta cagcgccatg caagtgctgg
    13201 aacgacttaa ggcgctgttt taagcattaa ctgtcggacg ctgtcacctg cggcggcgtc
    13261 tggcgaaaac gtcgcaactc caccagcacc agcaataaca acacgccgat aatcaacaaa
    13321 ccaaaaccgc tcgcgcttgc ggaagcaacc ggtgtcatca tcgctcccag accgcctaac
    13381 agcgccgcgc ctatggcatc gcccgtcacg ttttgtgccg tccacaaacc gttgattcgc
    13441 cctaacattg cttccggcgt ttgcgtttgc agcattgtat attgcagcaa cgaactgacc
    13501 gcactcagcc agccgaacag cgccagacaa accacgccta aaatccacat cggcatcagg
    13561 ccaaataaac caatggcgag gaacgatccc aacgtggaga gcaacatcaa caatcctggt
    13621 cgcgcgctat gcgccagttt cccactggtt aatgcgccaa tagccgcacc gagcgggatc
    13681 gccgcataga gaaaaccaat ctctgccgcc gacatctgcc agttgtcagc cagcgccgga
    13741 tacagtaccc gcaccgcgct cgccatcgtc aataaaccac ccagcaacgc aatcccgccc
    13801 accagcgggc tggcgagcag aaaacgaaat cctgccagta atgatttcaa cggatgctcg
    13861 cgcggctgcg gtggcggtgg caacgccgga aggcttaaca acggtagcaa ggtaataaac
    13921 gtgcccgccg ccgccagccc gtagttccag gctacgccac cggtcgccag caataaaccg
    13981 ccaatcatgg gcgaaatcac cgaccccaga cgcacggtca acatggtgat cgccccggcc
    14041 tgcattaagt tttcacgccc taccagtgct ggtgtcgccg ccaatagcgc cgtaacgcca
    14101 agcgatgcga aaaaaccatc ccataaacca agtaaataga ttgccagcaa tgacggctcc
    14161 ggcagcagtg cattaaggca cagtccaatg aagccaatgc cacaggtgcc gcgcgccagc
    14221 aaaatcactt ttttgcgctc atagcgatcc gccagcacac cgccaaccat caggccaaca
    14281 aacatcgcgc cgccggtcag cgtcaccgaa agccccacca gccaggtaga atgcgtcatc
    14341 atctggatct gcaccggcac cgcgacgccg agcaaaccca gagacacaat tgagataaaa
    14401 cgagcgagga atactgcgcg aaacgccggg tgcgttttca acaggctgag gttaagcagc
    14461 caggattgtt tattcattac aatgccttgc catcaaatat tttaaatacc tattcttagg
    14521 ctgcacatgc taacatatcc aaataagatc gataacgata attaatttca ttatcatgga
    14581 agttcgtatg tctggttctg ttgccgtgac acgcgccatt gccgtgcccg gattgctgtt
    14641 attactgatt atcgcgacgg cattaagcct gctcattggg gcaaaatcac tccccgcttc
    14701 cgtagtgctg gaggccttct ccggcacctg ccagagcgcc gactgcacca tcgtgctcga
    14761 cgcgcgactg ccgcgcaccc ttgccggttt actggcaggc ggcgcgcttg gccttgccgg
    14821 ggcgttgatg caaaccctca cccgaaatcc acttgccgac cccggcttgc ttggcgtgaa
    14881 cgccggagcc agctttgcca ttgtgctggg tgcggcgctg tttggttact catccgcgca
    14941 ggaacaactg gcgatggcct tcgccggggc gctggtggcc tcattgattg ttgcctttac
    15001 cggcagtcag ggcggcgggc agttaagtcc ggtgcgttta accctggcgg gcgtggcgct
    15061 ggcggcagtg ctggaagggc tgaccagcgg catcgccctg cttaatcctg acgtctacga
    15121 tcaactgcgt ttctggcaag ccggttcgct ggatattcgc aatctacata ccttaaaagt
    15181 ggtgctgatc ccggtgctga tcgccggagc aaccgcgcta ttactgagcc gcgcgctgaa
    15241 cagtttaagc ctcggcagcg acaccgcgac ggcgctgggc agtcgcgtgg cgcgcacaca
    15301 gttaattggt ctgctggcga ttaccgtgct ttgtggtagt gcgacagcgg tagttggccc
    15361 gattgccttt attggcctga tgatgccgca tatggcgcgt tggctggtgg gtgccgatca
    15421 tcgctggtcg ctgcccgtaa cgctgcttgc tacccctgcc ctgctgctgt ttgccgatat
    15481 catcgggcgg gtgattgtgc ccggtgaact gcgcgtttct gtggtcagtg cctttattgg
    15541 tgcaccggtg ctgatcttcc tcgtgcgacg taaaacgcga ggtggtgcat gatttacgtc
    15601 tctcgccgat tactcatcac ctgtttgctg cttatttccg cctgtgtggt tgcaggtatc
    15661 tggggattac gcagcggtgc cgtcacgctg gaaacctcgc aggtattcgc cgcgctgatg
    15721 ggcgatgcgc cgcgcagtat gacgatggtg gtcaccgaat ggcgtttacc acgcgtgctg
    15781 atggcgctgt tgattggcgc ggcactgggc gtcagcggtg cgatttttca gtcgctgatg
    15841 cgtaacccgc tcggcagccc tgacgtaatg ggctttaaca ccggggcgtg gagcggcgtg
    15901 ctggtggcga tggtgctgtt tggtcaggac ctgacggcta tcgcgctggc agcaatggtg
    15961 ggcggcattg tcacttctct gttggtctgg ctgctcgcct ggcgtaacgg tatcgacacc
    16021 tttcggttga ttattatcgg catcggcgtt cgcgccatgc tggtggcctt taatacttgg
    16081 ctgttgctga aagcgtcttt agaaacggcg ctaacagcgg gtttgtggaa tgccggatcg
    16141 ctcaatggcc tgacgtgggc aaaaacttcg ccttccgcac ccatcattat attgatgctc
    16201 attgccgccg ccttgctggt gcggcgaatg cgcttgctgg agatgggcga tgataccgcc
    16261 tgcgcgctgg gcgtcagcgt cgagcgttcg cgtctgttaa tgatgctggt tgcagtggtg
    16321 cttaccgctg cggcaacggc gcttgccggg ccgatttcct ttattgcttt agtcgcgccg
    16381 cacattgccc gacgcattag cggcaccgct cgctgggggc tgacccaggc ggcgctgtgc
    16441 ggagcgctgt tactgctggc ggccgatctc tgcgcccaac aactgtttat gccgtatcaa
    16501 cttccggttg gcgtcgttac cgtcagcctc ggcggtattt accttatcgt cttgttaatt
    16561 caggagtctc gcaaaaaatg accgaatcag tagcccgttt gcgcggcgaa cagttaaccc
    16621 tgggatatgg caaatatacc gttgcggaaa atctgactgt agaaattcct gatggtcact
    16681 tcacggcaat tatcggacca aatggctgtg gtaaatccac gttactgcgt accttaagcc
    16741 gcctgatgac gcctgctcac gggcatgtct ggctggatgg cgagcacatt aaacattacg
    16801 ccagtaaaga agttgcacgc cggattggtc tgttggcgca aaatgctacc acgccgggcg
    16861 atatcaccgt gcaggagctg gtggcgcgtg gacgttatcc gcatcaaccg ctgtttaccc
    16921 actggcgcaa agaggatgaa gaagcggtaa cgaaagcgat gcaggccacg ggaataactc
    16981 atctggcaga tcaaagcgtg gatacccttt ctggcggaca acgccagcga gcgtggatcg
    17041 cgatggtgct ggcccaggaa acggcaatta tgctgctcga cgaacccacg acctggctgg
    17101 atatcagtca tcagattgat ctactggaac tgttaagcga actgaaccgc gagaaaggct
    17161 ataccctggc ggcggtgctg cacgatctta atcaggcctg tcgttacgcc agccatttga
    17221 ttgcattgcg ggaagggaaa attgttgctc agggagcgcc gaaggagatt gtcactgctg
    17281 aactgattga gcgcatttat ggtctgcgat gcatgatcat tgacgatccg gtagccggaa
    17341 cgccgcttgt ggtgccgctc gaacgaacgg caccttcaac cgcaaatagt taaactaagt
    17401 ggtctgccat catggcatcc tgttttctgg atgccatcgc atagcgcaat aacacgctac
    17461 cacaagccac catcccgccg atcagcgcgg aaaggatcac aataatcgcc ttacccggac
    17521 cgtctttttt cactggcaat gacgggctta actgatattt aaacggcgta aaattcacat
    17581 cgttgacatt tgcttttgtt aattgctcga caagatactg ccgattacgt aattcaccgt
    17641 tcagttccgc aacgtcagta accgcttttt caatttccag tttgcgttca ataccgtctg
    17701 cgccgagaga aatagagaaa tcggggtcat ctttaacggc ctgaccatta ctgtatacgg
    17761 gctttttaat tcctgccgcg ttggcaatgt cgagtgaata attgaggcgc tgaatgtttg
    17821 catcaagttg atttttcgtt ttaatgcgat cctgagccag tttttctttt tcaaactggg
    17881 ttttgatctc cagtttatta cggacgtttt ctatcgactc tttcaccacc aacgcagaga
    17941 tataatcgat atacccgctc aaaacggtct gcgcctcttt actggttggc gcggtaaaac
    18001 ttagcgtcca ggaggtatac agtgacggtt catctttttt cttactggca ttgtcatcaa
    18061 ccgctttcat tttttcgctc aatgcaacaa tagcgcgatg caaatccagt tcatcgattt
    18121 tcgcctcttt taattggtcc atcacataag gtgatgaacg caggtactct tccagcaagc
    18181 taacagactg aaacttcttg ataaacaggt taaatgcacc gccacggtcg atattaacat
    18241 cgagatcaag aacgcggagt ttggtaaagg ttttctccag gtcctgccac tgaatggctt
    18301 cggcgggagt aataacggct gagctggtcc atttttgcgg caggatgaaa gagatcagta
    18361 aacctgcgca ggcaaatgca aaaacgaccg ccatgaccgt ttttttggcc cgccataaaa
    18421 cttcgattag attaagtaaa tcaatttcat tactactggg cgacgccaga ggatactcgg
    18481 aaaaatgagc gtcacttccc tgtttaatat tcagtgatga catgggtata acctgaaaat
    18541 gagtccaata gggggaaatc tccacggcgc tcactttacc agttggtgag aattatccga
    18601 agctgaagtt tgtaaattcc ttccactgaa tgcaacattc actctattta agagaaatat
    18661 tcatcaaacc tataaatcaa acaaataaaa aacccataat tattttctgt aattatgggt
    18721 ttatagataa tattaattta cctgtttagc gttgcgcgaa taatcggccc aatttttaca
    18781 aacgcccctg gagagataat atccacatgc gcacaatcct gacgatagat atccagctcg
    18841 gcaatccagg gcgaccaagc gcgttcgggg ctcatacctt cctgaagcgt gcgttcagca
    18901 acaaacagcg tcgctttacc atcaaacggt acgctatgag cagtcgtcag cagacgcaca
    18961 gcatcagcgt agttgccttc aatggtggta aacaactccg ttgaagtact tccctgctgt
    19021 gccgccagga aggcctcgcg ttcgcggtta atctccgcca gcacttccgg gtccagacca
    19081 ttagcctctt tttcctgcca gttttgcgtt tctggcggcc aggtatccag caaaccaaga
    19141 aatgccacct gttcgccacg ggcacgcagt cgcgccgcaa tgccctgcgc cagcgtaccg
    19201 ccaagggaat accccagcag gtaataaggg ccgtgcggtt gttgttcaag taacgttgcc
    19261 agatgcgctt cacagacttc atccagattt gccgcggtat gcatggggcc attggggcgc
    19321 ggcgactgaa tgccgataat cgaccattgt ggatcgatat aacgcgagag cacgctaaac
    19381 tgccaggcaa aaccggatgc cggatggaaa caaaacagcg tcgggccatt accttcacgc
    19441 aacggcagaa tggtttcgaa tcccatacgc cgggtgctgt cttcttcagc atcaataatc
    19501 gttgccagtt tagcgacggt tgacgcgacc atcacttgcc ccggcgtcac ctggcgggca
    19561 acctgccgac ttaactgcgc tgccagtttc attgccagta gcgaatgacc accaagcgca
    19621 aagaaatcag catcggcatc ctgcacgtca caacccagca acgacgcgaa tgccgcggca
    19681 ataatcgttt cactgcccgc ttttggcgca cgccccggcg cttgtgcctt cagttcaggc
    19741 aacggtaagg ctttgcgatc cagcttgccg ttggcgctaa gaggtaacag tggaagttgc
    19801 agcagaacca cgggcaccat atgtggtggc aatgtttcgc gaagctgcgc ctgtaatgcg
    19861 ctggtatcca acggcagacc tgattgcgac accagatagc ccaccaactg acgcgcatca
    19921 ccaccggtgg ctgccgcctg gttaatcaca caggcgtggg taacggcttg ttcgacatcc
    19981 ggcagcgcct gcatcacgcg atcgatttcg cccagttcaa tacgctgccc gcgaattttt
    20041 agctgatcgt cactgcgccc gaggtactcc accgcgccgt tatccagcca gcgggcaacg
    20101 tctccggtac ggtacatccg ttcaccaggg acaaaaggat cggcaataaa gcggctggcg
    20161 gtcagatcgg gtcgtccaag atacccctgc gccagttgaa tgccggtgag atagagatca
    20221 cccgccacac ccggcggcac cggatgcatc atcgcatcaa gaatacgcag acccgtattc
    20281 cataccggat aaccaatcgg cacactgctg ccgcgcacct gtgccagttc ctcgccaaaa
    20341 gccggatacc agctgacatc taccgccgct tccgtcgggc catatagatt atgcaacggc
    20401 acgctggtta actgttgcca ttcgcggcat aaatcagccg gtaaggcctc accactacag
    20461 aaaacctgtt tcaacgtcgc gcaactctgg cgagcggttt gcggcgtcag cgatgcaaca
    20521 aatgctgcca gcatcgacgg cacaaagtgc gtggtcgtta cgccatattc ggcaaagaat
    20581 tgctgcatag cgagcgggtc gcggtgcgct tccggttcag ccatcaccag tttagccccg
    20641 gcaataaacg gccagaaaaa ctcccacacc gagacatcaa aactgcacgg cgttttttgg
    20701 gcaacgacat cttcgcctgt aagcagataa tgattttgca tccacaacag gcggttaacg
    20761 atagccgtct gcccgaccat tacccctttc ggcctgccgg tggagccaga ggtaaagatg
    20821 atataagccg tgtgatgcgg ttgtgaaagt tgcagcggcg cactgccctg cggtttaagc
    20881 ggggcgttat agcaaaggtt ggttaaatct ggaacatcgg caaagcgcgg cagttgatcg
    20941 tcggtggtga ttaacagcga cggacgcgca tcttccagca tcattttcag gcgatcgtcc
    21001 ggatagccgg tatccagcgg tagccaggcc gcgccagctt caactatcgc atgtagcgcc
    21061 agggtcaaaa agaccgagcg cggtagcgcc accgccacgc tgtcgcccgg tttaacgcca
    21121 cgctcacgca gcagattcgc cagcgccacc acctgctcgc gcatttcccg atagctgaac
    21181 tggtaacgcg catctgccag cgccggagca tccggtgttt ttgccgcttg ttctgccacc
    21241 agcgcgctca gcgtggtttc tggaatctca acctgagtgg cgttgatctg cgccagctgc
    21301 gcatactcac ctggcagcat aatatcgaca tcgccgcaca acagcgccgg atccgcggcg
    21361 aactgggcaa tcagcatttt caggcgttca gcatgctgga ttaacgttgg ctcatcgtaa
    21421 cgctgtttat tggcgaggat ctcaatactc aaatcaccgt gttcatccgg gaacagggcc
    21481 agttcaaggt cattaaccgg accggttgcc aaggtatggg tttgcgcctg aacaccagga
    21541 atatccagtt ggtaatcaaa taccttgata ttgagtaccg gaccaaacag cggttcatca
    21601 cctgccgctc gcccgctgtc acggacaatt tgttcggcat cgtaacgttg atgacgacgc
    21661 atttttttca gttgtgctgc cagtcgggtt gccagttccg gcagcgtttc ttgcgccgca
    21721 atgtgaatac ccaacggcaa aacgttgagc acgggtccgg tagccgtcag cgccgccgag
    21781 cccagtcgac gcataaagat aaatccagcg gcgtagtcca tgcgattgca caatcgcccc
    21841 agccacaaag ccgtcagcgc aagggctaaa tcggtacgct gcacacctga aagttgcgta
    21901 gccaactggc ggaattcccc gtcggtaaat tccattttca gacgtaaaat atctgccgaa
    21961 gcgctgcgcc ccggtaaagg tgccggagaa agtgacgcgg gcggcggcag ttgacgacgc
    22021 tgttctgccc agaatgccgc atcacgctgc caggcttcgc tttcgcggta ttgctggtac
    22081 tcttccacta catcagcgaa aggcgtaaac ggcgaagcag gcgttggttc accacgcagc
    22141 catgtgcagt aaatattggc gatctggcgg gtaatggccg ggaaactgaa gccatcgacc
    22201 agcaaatggt gataacgctg ataccagtac cagcggttat ccgccacctg tatcagctga
    22261 tgaaagacca gtggtttacc gctatcgacg cgcagatctt gttgcaaatc cgcctgcatt
    22321 aatgcctgcg cagtaccgtg cggatcaatg ttggttcgca ggtcgataat ttctggcagt
    22381 tcgaacgtca gcgcatcatc gacccactgc cagacttcgc cgttatcttc cgtaaaacgc
    22441 atccgcagcg tatctgcttg cgctagtccg tcaaccaccg cgcgggccag taatggcgca
    22501 tcaacctctc cggttaactc aacgtaatgc gctacgctcc aggcggaggg taaatccgac
    22561 agtttttctg ccatccagat gccgggctgt gcggcgacca aaggtaaatg ctggctcatt
    22621 gcgcctcctg caactgggtg aaattcgccg gtgtcagagt acgccagtgg gcttcaagcc
    22681 actgctggca ggactcttgt gactgcggct gacacacaat gtcccagcct gccggtaagg
    22741 cgcattgttg cggccacaga ctgaattgcc cctgcgcatt gcgcaaaatg taaaacgctc
    22801 cctgtggatc atcgaaggga ttactgaatg ccatattcaa ctcctgtcat ggaaaagtgg
    22861 ttgccagagg tcgattagcc cctgcatcaa gccaccgcgc caacaaagcg catcatgtcc
    22921 gccgtcaacc tggcgccaga aaatggattc ttttatgggg tgtaattgcg catacagcgc
    22981 ctgattggcc cgcataatca tcggctcgcg aatacccgct tccagcacaa tgcgcagacc
    23041 ttcggcgcta acttcaccag ctttaagctt ttcaagtaac acgccctctt gctgcccgcc
    23101 ccgatgcggc caccagtacg atcctgactg gcttaataca caaccaaaac gttcaggcca
    23161 gtgcagtccg gcatacagcg cggaaagtcc accaaaactc tgcccggcaa ccacggtgcg
    23221 atcggcgcga tcgctaaaag gggcaatagc tttcaccagg ggtaataact cttgctgtac
    23281 tgcgagccag aaatccgcat tacacggcag ttcgtgagcg cggtgcgtgg tgtcgatagc
    23341 gtcgatcaac acatacacgg cgggaggaag ttgctgacga tgggtcagcg aagtcagcac
    23401 tggccagacg ggcatacttt gcgcccaaaa ttcgccatcg agcaaaactg ccagcgggcg
    23461 ttcttctgct gttgcatcgc cggtggtaaa aatccataca cgacgtgaat ttttcaaccg
    23521 ttcacttttc cagataattt ctttggctgg tatttctggc gcttgcggac aatcccatcc
    23581 cggttgcaga ggcgcttgcg gcatttcgag tgcagaaaca gcgtgccctc gcccgccttt
    23641 ccagctttgt ggattcagcg gatcggctat tgcctggggt aatagttttc gccagccttc
    23701 acgtaattcg aggcgatcgg gggatggtgc agaaaaaatg tcatcgcgtt cggtgggaat
    23761 aaagcagtag ctgccgcgcc agttggcatt gagttgtgtc gtccactgcc agacatcagt
    23821 acctgcaatg cgctgcatcg actggggctg gctgttctga tgatgatcgg tcacaccagt
    23881 gatgtagacc catacgcgct ttatcggcga gtattcttca gaaccttggg gatcacgcca
    23941 ccagaaagtg acctcaaaca tttcgtcatt cagacgctgc cattccgggc catgtttcga
    24001 ctgccaccag ctctcacttc ctacttttaa cgccgtcaca ccataacccc atgtttactg
    24061 tgcaattttt cattgattgc agaaatatat tgataatatt attgataact atttgcattt
    24121 gcaatagcgt aatggcgcgc cgtgggaagc gcggacatta attaaccaac tgcactgcgt
    24181 gtctttcagg atcaaaggtt ttcgcggtag cgggatgcgt cgtgttgagg acgaccatgc
    24241 ccgacagttg caattcgtgg caaaaatgca ggaataaaac aatgaacaag aagattcatt
    24301 ccctggcctt gttggtcaat ctggggattt atggggtagc gcaggcacaa gagccgaccg
    24361 atactcctgt ttcacatgac gataccattg tcgttaccgc cgccgagcag aacttgcagg
    24421 cacctggcgt ttcgaccatc accgcagatg aaatccgcaa aaacccggtt gcccgcgatg
    24481 tgtcggagat catccgtacc atgccaggcg ttaacctgac cggtaactcc accagtggtc
    24541 agcgtgggaa taaccgacag attgatattc gcggtatggg tccggaaaac acgctgattt
    24601 taattgacgg caaaccggtc agcagccgta actcggtgcg tcagggctgg cgtggcgagc
    24661 gcgatacccg tggtgatact tcctgggtgc cgcctgaaat gattgaacgt attgaagttc
    24721 tgcgtggtcc ggctgcagcg cgttatggca acggcgcggc gggtggcgta gttaacatca
    24781 ttaccaaaaa aggcagcggt gagtggcacg gttcctggga cgcttatttc aatgcgccag
    24841 aacataaaga ggaaggtgcc actaaacgca ccaacttcag tctgaccggc ccgctgggcg
    24901 acgaattcag cttccgcttg tatggcaacc tcgacaaaac ccaggctgac gcgtgggata
    24961 tcaaccaggg ccatcagtcc gcgcgtgccg gaacgtatgc cacgacgtta ccagccgggc
    25021 gcgaaggggt gatcaacaaa gatattaatg gcgtggtgcg ctgggacttc gcgcctctgc
    25081 aatcactcga actggaagcg ggttacagcc gccagggtaa cctgtatgcg ggcgataccc
    25141 agaacaccaa ctctgacgct tacactcgct cgaaatatgg cgatgaaacc aaccgcctgt
    25201 atcgccagaa ctactcgctg acctggaacg gtggctggga taacggagtg accaccagca
    25261 actgggtgca gtatgaacac acccgtaact cgcgtattcc ggaaggtctg gcgggcggta
    25321 ccgaagggaa atttaacgaa aaagcgacac aggatttcgt cgatatcgat cttgatgacg
    25381 tgatgctgca cagcgaagtt aacctgccga ttgatttcct cgttaaccaa acgctgacgc
    25441 tgggtacgga gtggaatcag caacggatga aggacttgag ttccaatacc caggcgctga
    25501 ccggggcgaa caccggcggc gctattgatg gtgtgagtgc caccgaccgt agcccgtatt
    25561 caaaagcaga aattttctcg ctatttgccg aaaacaacat ggagctgact gacagcacca
    25621 tcgtaacgcc ggggctgcgt ttcgatcatc acagtattgt cggcaataac tggagcccgg
    25681 cgctgaacat atcgcaaggt ttaggcgatg acttcacgct gaaaatgggc attgcccgcg
    25741 cctataaagc gccgagcctg taccagacta acccgaacta cattctctac agtaaaggtc
    25801 agggctgcta tgccagcgcg ggcggctgct atctgcaagg taacgatgac ctgaaagcag
    25861 aaaccagcat caacaaagag attggtctgg agttcaaacg cgacggctgg ctggcgggcg
    25921 tcacctggtt ccgtaacgat tatcgcaata agattgaagc gggctatgtg gctgtagggc
    25981 aaaacgcagt cggcaccgat ctctatcagt gggataacgt gccgaaagca gtggttgaag
    26041 gtctggaagg atcgttaaac gtaccagtta gcgaaacggt gatgtggacc aataacatca
    26101 cttatatgct gaagagtgaa aacaaaacca cgggcgaccg tttgtcgatc atcccggagt
    26161 acacgttgaa ctcaacgctg agctggcagg cgcgggaaga tttgtcgatg caaacgacct
    26221 tcacctggta cggtaagcag cagccgaaaa aatacaacta caaaggtcag ccagcggttg
    26281 gcccggaaac caaagaaatc agtccttaca gcattgtggg tctgagcgcg accagggatg
    26341 tgacgaagaa tgtcagtctg accggcggcg tggacaacct gttcgacaaa cgtttgtggc
    26401 gtgcgggtaa tgcccagacc acgggcgatc tggcaggggc caactatatc gcgggtgccg
    26461 gggcgtatac ctataacgag ccgggacgta cgtggtacat gagcgtaaac actcacttct
    26521 gatgctaacg tcagattgtt gataaagtgc gcgtcgttca tgccggatgc ggcgtgaacg
    26581 ccttatccgg cctacaaaaa tcttgccaat tcaatatatt gcaggaccat gtaggcctga
    26641 taagcgtagc gcatcaggca gtttagcgtt tgtcaccagt ctctaatatg gtcgacatga
    26701 aaactacgca tacctccctc ccctttgccg gacatacgct gcattttgtt gagttcgatc
    26761 cggcgaattt ttgtgagcag gatttactct ggctgccgca ttacgcgcaa ctacaacacg
    26821 ctggacggaa gcgcaaagcc gaacatttag ccgggcggat cgctgcaatt tatgcgctgc
    26881 gggaatatgg ctataaatgt gtgcccgcaa tcggcgagct acgccaaccg gtgtggcctg
    26941 cggaggtata cggcagtatt agccactgcg gggctacggc attggccgtg gtttcccgtc
    27001 aaccgattgg cgttgatatc gaagaaattt tttctgcgca aacagcgacc gaattgacag
    27061 acaacattat tacaccagca gaacacgagc gactcgcaga ctgcggttta gccttttctc
    27121 tggcgctgac actggcattt tccgccaaag agagcgcatt taaggcaagt gagatccaaa
    27181 ctgatgcagg ttttctggac tatcagataa ttagctggaa taaacagcag gtcatcattc
    27241 atcgtgagaa tgagatgttt gctgtgcact ggcagataaa agaaaaaata gtcataactc
    27301 tgtgccaaca cgattaattg acaacatctg gtacgattcg cccgcagcca tcactgaccg
    27361 cgggcgaaag tgtaaagcag gtgccttacc atcctgacct gacaaccgga tatgcgggga
    27421 ttgctccccg cacaacggct acttcttcgg ttcgtaagcg agaacagcct taaactcaat
    27481 attacgttcc tttacggtga actcacacag cgaatccccg accagaagcg taaatcccag
    27541 caccgttaaa cacagcacta tgactgccgc aagggcatat ttcgtcagca tgtttatatt
    27601 gcctccatgc gaagaaggga ctaccatcca aattgttcag gtttgggtag gtagccccag
    27661 ggttgataga aatatcgtcc tggggcttca tctttccaga cctcagagta aacctgaaac
    27721 cggaaagctt caggcacccg cagttatctt acccttgctt agcaaaatag ctgtttattt
    27781 atacagtaag tcctgtttcg gacttctcac tccccatttg atcaactgaa gctgaacccg
    27841 tttttttctg catgcctcaa tcgtcaaaat tcttcgccac agtcagcact gccataactt
    27901 gtcacattgc aaaagtagcc aaattgcttc tgtcataatc agttcaccat caccaaaaaa
    27961 aagaaacatt ccagaacttc cgcatctcgc ccagccgctc ccacttctat actgaataga
    28021 aaacgccaac ataagagaaa cctatgccat tacccgattt tcatgtttct gaacctttta
    28081 cactcggtat tgaactggaa atgctggtgg ttaatccgcc gggctatgac ttaagccagg
    28141 actcttcaat actgattgac gcggttaaaa ataagatcac ggccggagag gtaaagcacg
    28201 atatcaccga aagtatgctg gagctggcga cggatgtttg ccgtgatatc aaccaggctg
    28261 ccgggcaatt ttcagcgatg cagaaagtcg tattgcaggc agccgcagac catcatctgg
    28321 aaatttgcgg cggtggcaca cacccgtttc agaaatggca gcgacaggag gtatgcgata
    28381 acgagcgcta tcaacgaacg ctggaaaact ttggttatct cattcaacag gtgaccgttt
    28441 ttggtcagca tgttcatgtt ggctgcgcca gtggcgatga cgccatttat ttgctgcacg
    28501 gcctgtcacg gtttgtgccg cacttcatcg ccctttccgc cgcgtcgcca tatatgcaag
    28561 gaacggatac gcgttttgcc tcctcacgac cgaatatttt ttccgccttt cctgataatg
    28621 gcccgatgcc gtgggtcagt aactggcaac aatttgaagc cctgtttcgc tgtctgagtt
    28681 acaccacgat gatcgacagc attaaagatc tgcactggga tattcgcccc agtcctcatt
    28741 ttggcacggt ggaggttcgg gtgatggata ccccgttaac ccttagccac gcggtaaata
    28801 tggcgggatt aattcaggct accgcccact ggttactgac agaacgcccg ttcaaacatc
    28861 aggagaaaga ttacctgctg tataaattca accgtttcca ggcctgtcgc tatgggctgg
    28921 aaggcgtcat taccgatccg cacactggcg atcgtcgacc gctaacggaa gacaccttgc
    28981 gattgctgga aaaaatcgcc ccttccgcac ataaaattgg tgcatcgagc gcgattgagg
    29041 ccctgcatcg ccaggtcgtc agcggtctga atgaagcgca gctgatgcgc gatttcgtcg
    29101 ccgatggtgg ctcgctgatt gggctggtga aaaagcattg tgagatctgg gccggtgact
    29161 aagtagggaa ttgccttaca gaagaatatc cctgacaatg gtgttttaac ttacatttaa
    29221 caatgttatg aaacaccctt tagaaacctt gactaccgca gcaggcattt tgctgatggc
    29281 tttcctctct tgcctgctgc tgcccgcccc cgcactgggg ctgacgctgg cacaaaaact
    29341 ggtgaccatg ttccatctga tggatcttag ccagctttac actttattgt tttgtctgtg
    29401 gtttttagtg ctgggcgcta ttgagtattt tgttctgcgc tttatctggc gacgctggtt
    29461 ctcgctggcg gattaaacgt cgattatcgc cgtacttcgc ggcatacttt gcttattctc
    29521 cttcgcctaa aggaacgttt atggataagc aatcactgca cgaaacggcg aaacgcctgg
    29581 cccttgagtt accctttgtc gagctttgct ggccttttgg cccggagttc gatgttttta
    29641 aaattggcgg caaaattttt atgctgtcgt cggagctgcg cggcgtcccc tttatcaatc
    29701 tgaagtccga tccacaaaaa tccctgttaa atcagcagat atacccgagc attaagccag
    29761 ggtatcacat gaataaaaag cactggattt cggtgtatcc cggcgaggaa atctccgaag
    29821 cgttacttcg cgatctgatc aacgattcgt ggaatctggt ggttgatggt ctggctaaac
    29881 gcgatcaaaa aagagtgcgt ccaggctaaa gcggaaatct atagcgcatt tttctcgctt
    29941 accatttctc gttgaacctt gtaatctgct ggcacgcaaa attactttca catggagtct
    30001 ttatggatat catttctgtc gccttaaagc gtcattccac taaggcattt gatgccagta
    30061 aaaaacttac cccggaacag gccgagcaga tcaaaactct cctgcaatac agcccatcca
    30121 gcaccaactc ccagccgtgg cattttattg ttgccagcac ggaagaaggt aaagcgcgtg
    30181 ttgccaaatc cgctgccggt aattatgtgt tcaacgaacg taaaatactt gatgcctcgc
    30241 acgtcgtggt gttctgtgca aaaaccgcga tggacgatgc ctggctgaag ctggttgttg
    30301 accaggaaga tgctgatggc cgctttgcca cgccggaagc gaaagccgcg aacgataaag
    30361 gtcgcaagtt cttcgctgat atgcaccgta aagatctgca tgatgatgca gagtggatgg
    30421 caaaacaggt ttatctcaac gtcggtaact tcctgctcgg cgtggcggct ctgggtctgg
    30481 acgcggtacc catcgaaggt tttgacgccg ccatcctcga tgcagaattt ggtctgaaag
    30541 agaaaggcta caccagtctg gtggttgttc cggtaggtca tcacagcgtt gaagatttta
    30601 acgctacgct gcgaaatctc gtctgccgca aaacatcacc ttaaccgaag tgtaattctc
    30661 tcttgccggg catctgcccg gctatttccc ctcagattct cctgatttgc ataaccctgt
    30721 ttcagccgtc atcataggct gctgttgtat aaaggagacg ttatgcagga tttaatatcc
    30781 caggttgggg atttagcggg tattgagatc gatcacacca cctcgatggt gatgattttc
    30841 ggtattattt ttctgaccgc cgtcgtggtg catattattt tgcattgggt ggtactgcgg
    30901 accttcgaaa aacgtgccat cgccagttca cggctttggt tgcaaatcat tacccagaat
    30961 aaactcttcc accgtttagc ttttaccctg caggggatta tcgtcaatat tcaggcggta
    31021 ttctggctgc aaaaaggcac cgaagcggca gatattctga ctacctgcgc gcagttgtgg
    31081 atcatgatgt atgcgctgct ttcagtcttc tcgttgctgg atgttatttt gaatctggcg
    31141 cagaaattcc cggcggcatc tcagttaccg ctgaaaggga tatttcaggg gattaaactg
    31201 atcggcgcaa tcctggtcgg cattttgatg atctcgctgc tgattggtca gtcgccagcg
    31261 attctgatca gcggtcttgg tgcaatggct gccgtgctga tgttggtatt taaagatccg
    31321 attcttggtc tggtggcagg tattcagctt tccgcgaacg atatgctgaa actgggcgac
    31381 tggctggaga tgccgaaata cggcgcggat ggcacggtga tcgatattgg gttaaccacc
    31441 gtcaaagtgc gtaactggga caataccatt accactattc ccacctggtc tctggtttct
    31501 gactccttta aaaactggag cgggatgtca gcatctggcg ggcgacgtat taagcgcagt
    31561 atcagtattg atgtcaccag tattcgtttt cttgatgaag acgaaatgca acgtctgaat
    31621 aaagcgcact tgttaaaacc ttatttaacc agccgccatc aggaaattaa tgagtggaat
    31681 cgccagcaag gttctacgga gtcgatatta aacctgcgcc gaatgaccaa tattggaacc
    31741 tttcgtgcct atctgaacga atatctgcgt aaccatccgc ggattcgtaa agatatgacc
    31801 ttaatggtac gccaactggc tccaggtgat aacggtttac cgctcgagat ctacgcgttt
    31861 accaacaccg tggtgtggct ggaatatgaa agcattcagg ctgatatatt cgatcacata
    31921 tttgcgattg tcgaagagtt tggtctgcga cttcatcagt cgccagccgg caatgatatt
    31981 cgctctctgg cgggtgcatt taagcagtaa ttaaaaaaac cgctctcatc gaatggatga
    32041 gagcggacat cgttttgtcg gatgtagcgt gaatgcctta tttccgacgc agcgttttaa
    32101 atgccacaaa caggaataca atccacaccg gcagcaggat cgctgacaag cgcatatcat
    32161 ccatcgtgca catcagcagc aaaatcatgc cgaggaaggc aatgcaaaga tagttgccga
    32221 acggataaag cagcgcctta aactgtgttt cacgtccctg acgtcgcatc gccgcgcgaa
    32281 aacgcagatg cgccaggcag atcataatcc agttcaacag cagcgttgct accaccagcg
    32341 ccatcagcag accaaacgct ttttgcggca gcagatagtt gattaacacc accagcgaag
    32401 tgatcgctcc ggaaagcatc agcgagttaa tcggcacgcc gcgatggctg acgcgagtca
    32461 aaaacttcgg cgcattaccc tgcacagaaa ggccaaacag catgcggctg ttagagtaaa
    32521 ccccgctgtt atacactgac agcgatgcta ccagaatgac gaagttcagc gcagaagcta
    32581 cctcgttgct gtcgagatta tggaaaatca tcacaaacgg gctactgttg gatttcactt
    32641 ccacccacgg atagagcgcc agtaaaacca ccagtgaaca gatgtaaaac agcaggatgc
    32701 gatacaccac ctgatttacc gcttttggaa tgcttttttc cggatcgcgc gcttcagcgg
    32761 cagtaatccc aatcagctcc agaccgccga aggagaacat aattaccgcc agcgacaaaa
    32821 tcagcccatt ccagccggtg gcgaagaaac caccgtagcg ccagaggttg tcgatactgg
    32881 ctttctcgcc gccgtgacca gaaaacagca gccacaggcc aaagccgatc ataccgatga
    32941 ttgccagcac tttaatcaac gcaaaccaga actcggtttc gccatataag cgcacgttca
    33001 ccaggttaac ggcgttgatg ataataaaga aggcggcagc ccaaatccac gttggaacat
    33061 ccgggaacca gtactgcata tagatgcccg cagcggtcag ctctgccatt cccaccagca
    33121 cgaacattac ccagtagttc cagccagaga ggaagcccgc aaacggtccc cagtatttat
    33181 aggcaaagtg ggcaaatgaa ccggataccg gctcttcgac caccatctcg ccgagctggc
    33241 gcataatcag gaaagcgatg atcccggcga cgccgtagcc cagcaataca gccggacccg
    33301 ccatctgaat cgccgggcca atgccaagaa acagaccagt accaattgcg ccacccagcg
    33361 caatcagttg aatatgacgg ttatgtaatc cgcgatgaag cgtcggctct tgatttgacg
    33421 cagtatcttc cgatacggtt gacgcgtttt tcacgccttt cccctgtgtg tcttttttgt
    33481 tgaggggcac cttttaacat ttagtgccca tcgtcgcaag acacaatcca cacggttaaa
    33541 cggggtatcc tgcttttatt tccgtacccg atgtcggtgc agccacatca gcttatacgc
    33601 cgccgggata ataaacagcg acagcaaagg cgcggtgatc atgccgccaa tcatcggtgc
    33661 ggcaatccgg ctcatcacct ctgaaccagc ccccgttccc cacagaatcg gcagcagacc
    33721 ggcgataatc accgccaccg tcatcgcttt cgggcgcacg cgcagtaccg cgccgtgata
    33781 caacgcctca tccagcttct gctcactgaa tgtttgcgga ttattcaacg acggctcggc
    33841 ctctatggcg tgacgtaaat acatcagcat caccacgcca aattcggcgg cgcccccggc
    33901 aagggcaata aaaccggtgc ccgttgccac agaaagatga aagcccatcc accacagcaa
    33961 ccagatgccg cccaccagcg caaacggtac gctgctgata atcagcaacg cttcgcccac
    34021 ccgacggaat gccagataca acagcacgaa gatgatcatc agtgtcatcg gcaccatgag
    34081 tttcagctta tggttggcgc gctccagtag ctcgaactgc ccggagaatg ccacgctggt
    34141 gcccggtttt aactgcactt tttcaactat cgctttttgc aaatcgtgaa ccaccgacac
    34201 catgtcacga tcgcgggcat cgatataaat ccagctcgtc gggcgcgcat tctcggtttt
    34261 cagcatcgac ggtccggtag agactttaac gtcggccacg tctgccaggg tgatttgctg
    34321 cttcatcggc gtcaggatcg gtagctggcg cagtgcctgc gggctatcgc gccagctttg
    34381 cggataacgc agattaatgg gataacgggc aatcccttcc accgtttcgc caaccatcgc
    34441 cccgcccacc gcagaagtca caaacaactg cacatccgcc accgtcatac cgtaacgcgc
    34501 ggctttttca cggttaatct caacgttgat atagcgccca ccttccagac gctcggcaag
    34561 cgcagaagcc acgcctggca ccgttcgcgc tacttcttca atttgctcag ccatcgcgtc
    34621 gatatccgcc agcacagtgc cggaaacttt aatgccgatg gggcttttaa tgccggttga
    34681 gagcatatcg atacggttac gaattggcgg cacccacaga ttcgccagcc ccggcagccg
    34741 cacggtgtta tccagttcct caatgatttt gtccatcgtc atgccaggcc gccactgatc
    34801 ctgcggctta agctggatgg tcgtttcaac catctcgagc ggagcagaat cggtggcggt
    34861 ttccgctttc ccggttttgc caaatacccg cgccacttca ggtacgctca taattagctt
    34921 gtcgtttttt tgcagcatac tcgccgcctc tgctgcggaa atccccggca gcgtcgatgg
    34981 catatacaac aagtcgcctt cattgatctg cggtaaaaat tccccgccaa ctttattgag
    35041 cggccagaga accgtcagca ccgaaagcgc tgccaccaac agcgtggttt tcggccagtg
    35101 cagtactttc agcaatagag gatgataaac acgaatcaaa aagcgattga gcgggttact
    35161 gctttccggc ggaattttgc cacggatcca gtaacccatc aggatcggga tcactacgat
    35221 cgccagcagc gccgcacccg ccatcgcata cgttttggtg aacgccagcg ggccaaacag
    35281 acgcccttct tgcccttcca gggtgaagat tgggataaac gacagcgtga taatcagcag
    35341 actgataaac agcgccggcc ccacttcaac agatgcatcg gtaatcacct gccagcgcgt
    35401 tttattatcc agcgtggcgt caggatgctg gtgctgccac tcttccagcc gtttatgcgc
    35461 attctcgatc atgacgatag cagcatcgac catcgccccg acggcaatcg caatgccacc
    35521 caacgacata atattggcat tcagtccctg gaagggcatg acaataaaag caatacacaa
    35581 ccccagcggc aacgaaataa tcgccaccag cgccgagcgc acatgccaga gaaacagcgc
    35641 acagactacc gccaccacaa taaactcttc cagcaacttg ccgctgaggt tgtcgatggc
    35701 gcggtcaatg agctggctgc gatcgtatgt tgtaactatc tccacgcctt ccggcagact
    35761 acttttcagc gtttccagtt tgtccttcac ggcggcgatc acttctcggg cgtttttgcc
    35821 ggagcgcagg atcaccaccc cgcccgccac ttcgccttcg ccgttcagtt cggcaatgcc
    35881 ccggcgcatc tccgggccaa cctggacctt cgcaacatcg cgcagataaa cgggcacgcc
    35941 attttcactg gcttttaaaa cgatgtgatt aaagtcgtcg agcgtttgca gatagccgct
    36001 ggcgcgcacc atatattccg cttccgccag ttcgatcgac gaaccgcccg cttcctggtt
    36061 tgaagcatcc agcgcgcttt ttacttcggc gagactgatg ccatactgcg ccaggcgctg
    36121 gggatcgata accacctgat actctttcac cacaccgccc accgacgcca cttccgcaac
    36181 gtcagggatg gttttcagct catatttgag aaaccagtcc tgtaatgagc gtaaatcggc
    36241 cagatcgtgc ttaccgctgc gatccaccag tgcatattca tagatccagc caacacccgt
    36301 ggcatctggc cccagctcgg cgctgactcc cgcaggcagc ttaccctgta cctggttgag
    36361 gtactccagc acccgcgaac gcgcccagta cggatcggta ccatcttcga aaatgacata
    36421 cacataagag tcgccaaact gcgagaaacc acgcacagtc ttcgcgccag gcaccgacaa
    36481 catggtggtg gttagcggat aagtcacctg attttcaacg atttgcggtg cctgcccggg
    36541 atagctggtt ttaataatca cctgcacatc ggagagatcc ggcagcgcat ccactggcgt
    36601 attaatgatg gtccaggtgc cccagatgct aagaaacaac gcgcccatca gcaccaaaaa
    36661 acggttcgcc accgagcgac gaataatcca ttcaatcatt ggttattccc tcaatgcgca
    36721 tgggtagcac tttcagagcg catccgctcc agtgcgccag aaatattggc ttcggaatca
    36781 atcaggaaaa ggccgctgga aaccaccttt tcaccttccg ccagaccaga gcgtaatgcg
    36841 gtgacacctt gcgatgcctg gaaaacggca acgcgtttcg gtacaaagcg cccgtcggca
    36901 tcaatggtaa tcacccgctg ttcgctaccg gtatcaatca gcccttgtga cggaatgagc
    36961 agcatcggtt cgctggcggt attgagttgc aaccaggcgt tcatgcccgg ttttagcgcc
    37021 tcgtcggcgt tgtcgacttc cagacgcagc tgcagcgtgc gggtcgcggc atccacgccg
    37081 ggtagcagcg tccatttgcg gatggtgagt gttttatccg gtcgtgccgg aacggtgagc
    37141 gtaaactgcg aggcatcttt caccagccaa gcgatagact ccgggatcgc agcagtgacc
    37201 cacaccgggt ccataccctg aattttcgct accacgttat ctttggcgat attcattccc
    37261 gcgcgcagat caaacgcggt gatcacgcca tcaatgggcg ctttgagcgt aaagcgagtc
    37321 tggatttttt gcgtggcgat caggcggcga atatccgcct ccggcattcc cgccagtcgc
    37381 agccgctcaa gaatgccttc agtctgggtc gccgtaccgc cggtttcgcg cagcagtaaa
    37441 tactcactct gcgcttccac ccagtcagga atggtcaggt cgagaagcgg tgtgcccttt
    37501 tgtactttat cgcccacggt aagcggatac accttgtcga taaacccggc agcgcgagcc
    37561 tgcacaatgg catactgata ctcgttgtaa ctgacattcg ccgggaaact ctgggcaaaa
    37621 gtcagcggtc cgcgcgtgac ggtagccgtt ttcaccccca gattctgcgt ctgagtcggg
    37681 tcaatgcgca caccagacgc agaactctct tcatcggcat atttcggcac cagatccata
    37741 tccataaacg gcgatttacc tggtttatcg aaccgcgtat tggggtacat cgggtcgtac
    37801 cagaataaga ttttacgt
//
LOCUS       DADMJB010000017        36826 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.017, whole genome shotgun sequence.
ACCESSION   DADMJB010000017 DADMJB010000000
VERSION     DADMJB010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 36826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36826
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.017"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            583..669
                     /gene="leuL"
                     /locus_tag="JN078_000802"
     CDS             583..669
                     /gene="leuL"
                     /locus_tag="JN078_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leu operon leader peptide"
                     /protein_id="HAY9040090.1"
                     /translation="MTHIVRFIGLLLLNASSLRGRRVSGIQH"
     gene            762..2333
                     /gene="leuA"
                     /locus_tag="JN078_000803"
     CDS             762..2333
                     /gene="leuA"
                     /locus_tag="JN078_000803"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016831521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HAY9040091.1"
                     /translation="MSQQVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVME
                     VGFPVSSPGDFESVQTIARQVKNSRVCALARCVEKDIDVAAESLKVAEAFRIHTFIAT
                     SPMHIATKLRSTLDEVIERAIYMVKRARNYTDDVEFSCEDAGRTPIADLARVVEAAIN
                     AGATTINIPDTVGYTMPFEFAGIISGLYERVPNIDKAIISVHTHDDLGLAVGNSLAAV
                     HAGARQVEGAMNGIGERAGNCSLEEVIMAIKVRKDILNVHTAINHQEIWRTSQLVSQI
                     CNMPIPANKAIVGSGAFAHSSGIHQDGVLKNRENYEIMTPESIGLNQIQLNLTSRSGR
                     AAVKHRMDEMGYKESEYNLDNLYDAFLKLADKKGQVFDYDLEALAFIGKQQEEPEHFR
                     LDYFSVQSGSNDIATAAVKLACGEEVKAEAANGNGPVDAVYQAINRITDYNVELVKYS
                     LTAKGHGKDALGQVDIVANYNGRRFHGVGLATDIVESSAKAMVHVLNNIWRAAEVEKE
                     LQRKAQHNENNKETV"
     gene            2333..3424
                     /gene="leuB"
                     /locus_tag="JN078_000804"
     CDS             2333..3424
                     /gene="leuB"
                     /locus_tag="JN078_000804"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HAY9040092.1"
                     /translation="MSKNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYD
                     VGGAAIDNHGQPLPPATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHF
                     KLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK
                     AFDTEVYHRFEIERIARIAFESARKRRHKVTSIDKANVLQSSILWREIVNEIATEYPD
                     VELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG
                     FGLYEPAGGSAPDITGKNIANPIAQILSLALLLRYSLDADDAACAIERAINRALEEGI
                     RTGDLARGAAAVSTDEMGDIIARYVAEGV"
     gene            3427..4827
                     /gene="leuC"
                     /locus_tag="JN078_000805"
     CDS             3427..4827
                     /gene="leuC"
                     /locus_tag="JN078_000805"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HAY9040093.1"
                     /translation="MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGL
                     RAHGRPVRQPGKTFATMDHNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNH
                     PYQGIVHVMGPEQGVTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQ
                     GRAKTMKIEVQGKAAPGITAKDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMT
                     LCNMAIEMGAKAGLVAPDETTFNYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTV
                     VTLQAEEISPQVTWGTNPGQVISVNDNIPDPASFADPVERASAEKALAYMGLKPGIPL
                     TEVAIDKVFIGSCTNSRIEDLRAAAEIAKGRKVAPGVQALVVPGSGQVKAQAEAEGLD
                     KIFIEAGFEWRLPGCSMCLAMNNDRLNPGERCASTSNRNFEGRQGRGGRTHLVSPAMA
                     AAAAVTGHFADIRNIK"
     gene            4838..5443
                     /gene="leuD"
                     /locus_tag="JN078_000806"
     CDS             4838..5443
                     /gene="leuD"
                     /locus_tag="JN078_000806"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HAY9040094.1"
                     /translation="MAEKFIKHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLF
                     NDWRFLDEKGQQPNPDFVLNFPQYQGASILLARENFGCGSSREHAPWALTDYGFKVVI
                     APSFADIFYGNSFNNQLLPVKLSDAEVDELFALVKANPGIHFDVDLEAQEVKAGEKTY
                     RFTIDAFRRHCMMNGLDSIGLTLQHDDAIAAYEAKQPAFMN"
     gene            complement(5492..6574)
                     /locus_tag="JN078_000807"
     CDS             complement(5492..6574)
                     /locus_tag="JN078_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9040095.1"
                     /translation="MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREV
                     GAQPFWIGLFYTVNTIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNAPLFAFNRH
                     YLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSIAAGIFTLSLVLIAFML
                     PSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSELGLPD
                     KLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMVVIAVAAGVLFYTGLIFFHSRMALM
                     TLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNSISTGVILAGVIQGAIAQSW
                     GHFAVYWVIAVISVVALFLTAKVKDV"
     gene            complement(6676..6807)
                     /gene="sgrT"
                     /locus_tag="JN078_000808"
     CDS             complement(6676..6807)
                     /gene="sgrT"
                     /locus_tag="JN078_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose uptake inhibitor SgrT"
                     /protein_id="HAY9040096.1"
                     /translation="MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES"
     gene            6896..8551
                     /locus_tag="JN078_000809"
     CDS             6896..8551
                     /locus_tag="JN078_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator SgrR"
                     /protein_id="HAY9040097.1"
                     /translation="MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLL
                     NTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKAT
                     VRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEE
                     NGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIA
                     DIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRN
                     TTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEG
                     CYYLLFDSRTHRGANQQVRDWVNYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHART
                     IKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIES
                     DIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVA
                     SKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP"
     regulatory      8585..8684
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            8715..9698
                     /gene="thiB"
                     /locus_tag="JN078_000810"
     CDS             8715..9698
                     /gene="thiB"
                     /locus_tag="JN078_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706021.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate binding
                     subunit"
                     /protein_id="HAY9040098.1"
                     /translation="MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAF
                     EADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVA
                     ADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRT
                     STPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTS
                     PAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIP
                     TGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISGWQRAVSR"
     gene            9674..11284
                     /gene="thiP"
                     /locus_tag="JN078_000811"
     CDS             9674..11284
                     /gene="thiP"
                     /locus_tag="JN078_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine/thiamine pyrophosphate ABC transporter
                     permease ThiP"
                     /protein_id="HAY9040099.1"
                     /translation="MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWV
                     AVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLIL
                     PVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQ
                     ALENIPDEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLG
                     GGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQ
                     GWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTS
                     LRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFL
                     LLNNTIGLQQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRL
                     KVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGA
                     VTALILLLLCFLLFTVIEKLPGRNVKTD"
     gene            11268..11966
                     /gene="thiQ"
                     /locus_tag="JN078_000812"
     CDS             11268..11966
                     /gene="thiQ"
                     /locus_tag="JN078_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706019.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter ATP-binding protein
                     ThiQ"
                     /protein_id="HAY9040100.1"
                     /translation="MLKLTDITWLYQHLPMRFSLTVERGEQVAILGPSGAGKSTLLNL
                     IAGFLTPASGSLTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKL
                     NAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSAL
                     DPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTEELL
                     SGKASASAILGITG"
     gene            complement(12079..12843)
                     /locus_tag="JN078_000813"
     CDS             complement(12079..12843)
                     /locus_tag="JN078_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HAY9040101.1"
                     /translation="MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAG
                     LGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTE
                     HALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGI
                     LAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLL
                     WLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGV"
     gene            complement(12929..13807)
                     /gene="araC"
                     /locus_tag="JN078_000814"
     CDS             complement(12929..13807)
                     /gene="araC"
                     /locus_tag="JN078_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose operon transcriptional regulator AraC"
                     /protein_id="HAY9040102.1"
                     /translation="MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKG
                     YILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRA
                     YWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLL
                     LRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ
                     LGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEF
                     RAGCEEKVNDVAVKLS"
     gene            14146..15846
                     /gene="araB"
                     /locus_tag="JN078_000815"
     CDS             14146..15846
                     /gene="araB"
                     /locus_tag="JN078_000815"
                     /EC_number="2.7.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulokinase"
                     /protein_id="HAY9040103.1"
                     /translation="MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCD
                     APNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVL
                     ALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKI
                     LHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLP
                     PASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCH
                     MGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAG
                     QSAFGDIYAWFGRVLGWPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLP
                     VVLNWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGI
                     AVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIP
                     SAQQKMASAVEKTLQPRSEQTQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVPTL
                     "
     gene            15857..17359
                     /gene="araA"
                     /locus_tag="JN078_000816"
     CDS             15857..17359
                     /gene="araA"
                     /locus_tag="JN078_000816"
                     /EC_number="5.3.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose isomerase"
                     /protein_id="HAY9040104.1"
                     /translation="MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKL
                     PCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQ
                     FHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERI
                     GSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVV
                     NSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFT
                     TTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMED
                     YTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAI
                     VASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHH
                     TVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR"
     gene            17559..18254
                     /gene="araD"
                     /locus_tag="JN078_000817"
     CDS             17559..18254
                     /gene="araD"
                     /locus_tag="JN078_000817"
                     /EC_number="5.1.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HAY9040105.1"
                     /translation="MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPS
                     GVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHAT
                     IWAQSGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDA
                     AQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMEIFCRQLAPQLPDMQQTLLDKH
                     YLRKHGAKAYYGQ"
     gene            18329..20680
                     /gene="polB"
                     /locus_tag="JN078_000818"
     CDS             18329..20680
                     /gene="polB"
                     /locus_tag="JN078_000818"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase II"
                     /protein_id="HAY9040106.1"
                     /translation="MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAF
                     IPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVT
                     VYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETT
                     RHGELYCIGLEGCGQRIVYMLGSENGDASSLDFELEYVASRPQLLEKLNAWFANYDPD
                     VIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIID
                     GIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLK
                     DCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLG
                     EVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHS
                     TEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTAC
                     RFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIG
                     RALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEG
                     DKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGELDARL
                     VYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPL
                     DYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF"
     gene            20844..23750
                     /gene="rapA"
                     /locus_tag="JN078_000819"
     CDS             20844..23750
                     /gene="rapA"
                     /locus_tag="JN078_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001117023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-associated protein RapA"
                     /protein_id="HAY9040107.1"
                     /translation="MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYA
                     RSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFL
                     DSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLN
                     IAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVE
                     MLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDL
                     LVVDEAHHLVWSEDAPSREYQAIEQLAEHMPGVLLLTATPEQLGMESHFARLRLLDPN
                     RFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSD
                     SEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKV
                     SGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLV
                     ICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIG
                     SEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRW
                     YHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLE
                     QGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLLDIIGINQDDRGDNMIVL
                     TPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGS
                     STISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQV
                     EFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKL
                     SAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ"
     gene            23762..24421
                     /gene="rluA"
                     /locus_tag="JN078_000820"
     CDS             23762..24421
                     /gene="rluA"
                     /locus_tag="JN078_000820"
                     /EC_number="5.4.99.28"
                     /EC_number="5.4.99.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA pseudouridine(32) synthase/23S
                     rRNA pseudouridine(746) synthase RluA"
                     /protein_id="HAY9040108.1"
                     /translation="MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKD
                     SVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWG
                     HPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGR
                     SHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD
                     F"
     gene            complement(24538..25353)
                     /gene="djlA"
                     /locus_tag="JN078_000821"
     CDS             complement(24538..25353)
                     /gene="djlA"
                     /locus_tag="JN078_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone DjlA"
                     /protein_id="HAY9040109.1"
                     /translation="MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWF
                     ANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFR
                     VGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEE
                     LGISRAQFDQFLRMMQGGAQFGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDA
                     TTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK"
     gene            25608..27962
                     /gene="lptD"
                     /locus_tag="JN078_000822"
     CDS             25608..27962
                     /gene="lptD"
                     /locus_tag="JN078_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HAY9040110.1"
                     /translation="MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQ
                     GDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVR
                     TVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGEN
                     RYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQL
                     PVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEF
                     RYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWQHSGVMDQVWRFNVDYTKV
                     SDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEP
                     QLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTE
                     AKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTL
                     EPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRI
                     YDDAAVEHFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRG
                     GIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGI
                     SQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWD
                     NDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL"
     gene            28015..29301
                     /gene="surA"
                     /locus_tag="JN078_000823"
     CDS             28015..29301
                     /gene="surA"
                     /locus_tag="JN078_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SurA"
                     /protein_id="HAY9040111.1"
                     /translation="MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDG
                     LMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIAN
                     IAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESL
                     AQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIA
                     HSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGE
                     SKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGS
                     ANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAA
                     QKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN"
     gene            29301..30290
                     /gene="pdxA"
                     /locus_tag="JN078_000824"
     CDS             29301..30290
                     /gene="pdxA"
                     /locus_tag="JN078_000824"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HAY9040112.1"
                     /translation="MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLT
                     DRAAMLGLPLTLRPYSPNSPAQPQTAGTLTLLPVALRESVTAGQLAIENGHYVVETLA
                     RACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRV
                     ALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHM
                     GTEEIDTIIPVLDELRAQGMILNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQ
                     GFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ"
     gene            30287..31108
                     /gene="rsmA"
                     /locus_tag="JN078_000825"
     CDS             30287..31108
                     /gene="rsmA"
                     /locus_tag="JN078_000825"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HAY9040113.1"
                     /translation="MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEI
                     GPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE
                     KMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRL
                     SVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAF
                     NQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPLQES"
     gene            31111..31488
                     /gene="apaG"
                     /locus_tag="JN078_000826"
     CDS             31111..31488
                     /gene="apaG"
                     /locus_tag="JN078_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Co2+/Mg2+ efflux protein ApaG"
                     /protein_id="HAY9040114.1"
                     /translation="MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQ
                     LLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMI
                     DENGVPFSIDIPVFRLAVPTLIH"
     gene            31495..32337
                     /gene="apaH"
                     /locus_tag="JN078_000827"
     CDS             31495..32337
                     /gene="apaH"
                     /locus_tag="JN078_000827"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase
                     (symmetrical)"
                     /protein_id="HAY9040115.1"
                     /translation="MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPG
                     SLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWL
                     RRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMP
                     NNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVA
                     EEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLGE
                     AAAS"
     gene            complement(32415..32894)
                     /gene="folA"
                     /locus_tag="JN078_000828"
     CDS             complement(32415..32894)
                     /gene="folA"
                     /locus_tag="JN078_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 dihydrofolate reductase"
                     /protein_id="HAY9040116.1"
                     /translation="MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGR
                     HTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQ
                     FLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR"
     gene            complement(33086..34948)
                     /gene="kefC"
                     /locus_tag="JN078_000829"
     CDS             complement(33086..34948)
                     /gene="kefC"
                     /locus_tag="JN078_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     protein KefC"
                     /protein_id="HAY9040117.1"
                     /translation="MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPW
                     GLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLG
                     LFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAI
                     PLVAMIPLLATSSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREV
                     FSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLF
                     FIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQ
                     GSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREA
                     DEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDA
                     TRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQ
                     AGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTK
                     ARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS"
     gene            complement(34941..35471)
                     /gene="kefF"
                     /locus_tag="JN078_000830"
     CDS             complement(34941..35471)
                     /gene="kefF"
                     /locus_tag="JN078_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     oxidoreductase KefF"
                     /protein_id="HAY9040118.1"
                     /translation="MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNI
                     DIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVLSHGWAYGHGGKALHGKHLLW
                     AVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQA
                     RHYKQRLLEWQEAHHG"
     gene            complement(35553..>36826)
                     /locus_tag="JN078_000831"
     CDS             complement(35553..>36826)
                     /locus_tag="JN078_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005116114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9040119.1"
                     /translation="DGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLF
                     GYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMI
                     TEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIG
                     RFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLF
                     VAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNT
                     AGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELF
                     PTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFA
                     PETSRDVIGANQQYDDPRAENGVNCSDFSLF"
BASE COUNT         8959 a        10084 c         9691 g         8092 t
ORIGIN      
        1 tgcatataaa ataagaaaaa gcaaaatgag taaaattcgg aaaacataaa gatacgggtt
       61 ctgataaaaa cagaatccat tgccgtggaa tgagtcattt accacagcat aataatccat
      121 aatgtttttg ttgcgaaaac aatctaatca taactaccgc gaatactcaa tcatctacaa
      181 aatggattaa atgtgcttat ttaataatta atttatatat ttaatgcatt aattattaac
      241 attaatggat caataatatt caccatatca atatcaaaaa aaaattcgca aaacatataa
      301 ttcaatacaa atcatcagga taggttttgc aacgcgtgca ttttgtcccc tttttcctcg
      361 ttgattagat gcaaaaattt attctgaaat atgtcaacct atgaaaagtg tcggtcgtta
      421 aacagaaatt aatatcgctt gctttaacca ccgcagcaca attagctaat tttacggatg
      481 cagaactcgc gctggcggga cgtttttatt gcgtcagggt tgacatccgt ttttgtatcc
      541 agtaactcta aaagcatatc gcattcatct ggagctgatt taatgactca catcgttcgc
      601 tttatcggtc tactactact aaacgcatct tctttgcgcg gtagacgagt gagcggcatc
      661 cagcattaag ccagcacgca gtcaaacaaa aaacccgcgc cattgcgcgg gtttttttat
      721 gcccgaagcg aggcgctcta aaagagacaa ggacccaaac catgagccag caagtcatta
      781 ttttcgatac cacattgcgc gacggtgaac aggcgttaca ggcaagcttg agtgtgaaag
      841 aaaaactgca aattgcgctg gcccttgagc gtatgggtgt tgacgtgatg gaagtcggtt
      901 tccccgtctc ttcgccgggc gattttgaat cagtgcaaac catcgcccgc caggttaaaa
      961 acagccgcgt atgcgcgtta gctcgctgcg tggagaaaga tatcgacgtg gcggccgaat
     1021 ccctgaaagt cgccgaagcc ttccgtattc atacctttat tgccacttcg ccaatgcaca
     1081 tcgccaccaa gctgcgcagc acgctggatg aagtgatcga acgcgctatc tatatggtga
     1141 aacgcgcccg taattacacc gatgatgttg aattttcttg cgaagatgcc gggcgtaccc
     1201 ccattgccga tctggcgcga gtggtcgaag cggcgattaa tgccggtgcc accaccatca
     1261 acattccgga caccgtgggc tacaccatgc cgtttgagtt cgccggaatc atcagcggtc
     1321 tgtatgaacg cgtacctaac atcgacaaag ccattatttc cgtacatacc cacgacgatt
     1381 taggcctggc ggtcggcaac tcactggcgg cggtacatgc cggtgcacgc caggtggaag
     1441 gtgcaatgaa cgggatcggc gagcgtgccg gtaactgttc gctggaagaa gtcatcatgg
     1501 cgattaaagt tcgtaaggat attctcaacg tccacaccgc cattaatcac caggagatat
     1561 ggcgcaccag ccagttagtt agccagattt gtaatatgcc gatcccggca aacaaagcca
     1621 ttgttggcag cggcgcattc gcccactcct ccggtatcca ccaggatggc gtgctgaaaa
     1681 accgcgaaaa ctacgaaatc atgacaccag aatctattgg tctgaaccaa atccagctga
     1741 atctgacctc tcgttcgggg cgtgcggcgg tgaaacatcg catggatgag atggggtata
     1801 aagaaagtga atataattta gacaatttgt acgatgcttt cctgaagctg gcggacaaaa
     1861 aaggtcaggt gtttgattac gatctggagg cgctggcctt catcggtaag cagcaagaag
     1921 agccggagca tttccgtctg gattacttca gcgtgcagtc tggctctaac gatatcgcca
     1981 ccgccgccgt caaactggcc tgtggcgaag aagtcaaagc agaagccgcc aacggtaacg
     2041 gtccggtcga tgccgtctat caggcaatta accgcatcac tgactataac gtcgaactgg
     2101 tgaaatacag cctgaccgcc aaaggtcacg gtaaagatgc gctgggtcag gtggatattg
     2161 tcgccaacta caacggtcgc cgcttccacg gcgtcggcct ggccaccgat attgtcgagt
     2221 cctccgccaa agccatggtg cacgtactga acaatatctg gcgtgccgca gaagtcgaaa
     2281 aagagttgca acgcaaagct caacacaacg aaaacaacaa ggaaaccgtg tgatgtcgaa
     2341 gaattaccat attgccgtat tgccggggga cggtattggt ccggaagtga tgacccaggc
     2401 gctgaaagtg ctggatgccg tgcgcaaccg ctttgcgatg cgcatcacca ccagccatta
     2461 cgatgtaggc ggcgcagcca ttgataacca cgggcaacca ctgccgcctg cgacggttga
     2521 aggttgtgag caagccgatg ccgtgctgtt tggctcggta ggcggtccga aatgggaaca
     2581 tttaccacca gaccagcaac cagaacgcgg cgcgctgttg cctttgcgta agcacttcaa
     2641 attattcagc aacctgcgtc cggcaaaact gtatcagggg ctggaagcat tctgtccgct
     2701 gcgtgctgac attgccgcta acggcttcga catcctgtgc gtgcgcgaac tgaccggcgg
     2761 catctatttc ggtcagccaa aaggccgcga aggtagcgga cagtatgaaa aagcgtttga
     2821 taccgaggtg tatcaccgtt ttgagatcga acgtatcgcc cgcatcgcgt ttgaatctgc
     2881 ccgcaagcgt cgccacaaag tcacctcaat cgacaaagcc aacgtgctgc aatcctctat
     2941 tttatggcgg gagatcgtta acgagatcgc cacggaatac ccggatgtcg aactggcgca
     3001 tatgtacatc gacaacgcca ccatgcagct gattaaagat ccatcacagt ttgacgtcct
     3061 gctgtgctcc aacctgtttg gcgacattct gtctgacgag tgcgcaatga tcactggctc
     3121 gatggggatg ttgccttccg ccagcctgaa cgagcaaggt tttggtctgt atgaaccggc
     3181 aggcggctca gcaccagata tcacaggcaa aaacatcgcc aacccgattg cgcaaattct
     3241 gtcgctggca ctgctgctgc gctacagcct ggatgccgat gatgcggctt gcgccattga
     3301 acgcgccatt aaccgcgcat tagaagaagg cattcgcacc ggggatttag cccgtggcgc
     3361 tgccgccgtt agtaccgatg aaatgggcga tatcattgcc cgctatgtgg cagaaggggt
     3421 gtaatcatgg ctaaaacgtt atacgaaaaa ttattcgacg ctcacgtagt gtacgaagcc
     3481 gaaaacgaaa ccccgctgtt atatatcgac cgccacctgg tgcatgaagt gacctcaccg
     3541 caggcgttcg atggtctgcg cgcccacggt cgcccggtac gtcagccggg caaaaccttc
     3601 gccactatgg atcacaacgt ctctacccag acgaaagaca ttaatgcctg tggtgaaatg
     3661 gcgcgcatcc agatgcagga gctgattaaa aactgcaaag aatttggcgt cgaactgtat
     3721 gacctgaatc acccgtatca ggggatcgtc cacgtaatgg ggccggaaca gggcgtcacc
     3781 ttgccgggga tgaccattgt ctgcggcgac tcgcataccg ccacccacgg cgcgtttggc
     3841 gcactggcct ttggtatcgg cacttccgaa gttgaacacg tactggcaac gcaaaccctg
     3901 aaacagggcc gcgcaaaaac catgaaaatt gaagtccagg gcaaagccgc gccgggcatt
     3961 accgcaaaag atatcgtgct ggcaattatc ggtaaaaccg gtagcgcagg cggcaccggg
     4021 catgtggtgg agttttgcgg cgaagcaatc cgtgatttaa gcatggaagg tcgtatgacc
     4081 ctgtgcaata tggcaatcga aatgggcgca aaagccggtc tggttgcacc ggacgaaacc
     4141 acctttaact atgtcaaagg ccgtttgcat gcgccgaaag gcaaagattt cgacgacgcc
     4201 gttgcctact ggaaaaccct gcaaaccgac gaaggcgcaa ctttcgatac cgttgtcact
     4261 ctgcaagcag aagaaatttc accgcaggtc acctggggca ccaatccagg ccaggtgatt
     4321 tccgtgaacg acaatattcc cgatccggct tcgtttgccg atccggttga acgcgcgtcg
     4381 gcagaaaaag cgctggccta tatggggctg aaaccgggca ttccgctgac cgaagtggct
     4441 atcgacaaag tgtttatcgg ttcctgtacc aactcgcgca ttgaagattt acgcgcggca
     4501 gcggagatcg ccaaagggcg aaaagtcgcg ccaggcgtgc aggcactggt ggttcccggc
     4561 tctggccagg taaaagccca ggcggaagcg gaaggtctgg ataaaatctt tattgaagcc
     4621 ggttttgaat ggcgcttgcc tggctgctca atgtgtctgg cgatgaacaa cgaccgtctg
     4681 aatccgggcg aacgttgtgc atccaccagc aaccgtaact ttgaaggccg ccaggggcgc
     4741 ggcgggcgca cgcatctggt cagcccggca atggctgccg ctgctgctgt gaccggacat
     4801 ttcgccgaca ttcgcaacat taaataagga gcagaccatg gcagagaaat ttatcaaaca
     4861 cacaggcctg gtggttccgc tggatgccgc caatgtcgat accgatgcaa tcatcccgaa
     4921 acagtttttg cagaaagtga cccgtacggg ttttggcgcg catctgttta acgactggcg
     4981 ttttctcgat gaaaaaggcc aacagccaaa cccggacttc gtgctgaact tcccgcagta
     5041 tcagggcgct tccattttgc tggcacgaga aaacttcggc tgtggctcct cgcgtgagca
     5101 cgcgccctgg gcattgaccg actacggttt taaagtggtg attgcgccga gttttgctga
     5161 catcttctac ggcaatagct ttaacaacca gctgctgccg gtgaaattaa gcgatgcaga
     5221 agtggacgaa ctgtttgcgc tggtgaaagc caatccgggg atccatttcg acgtggatct
     5281 ggaagcgcaa gaggtgaaag cgggagagaa aacctatcgc tttaccatcg atgccttccg
     5341 ccgccactgc atgatgaacg gtctggacag tattgggctt accttgcagc acgacgacgc
     5401 cattgccgct tatgaagcaa aacaacctgc gtttatgaat taatcccctt gcccggtcaa
     5461 atgaccgggc tttccgctat cgtccacgtc atcaaacgtc tttaaccttt gcggttaaaa
     5521 ataatgcgac aacagaaata accgcaatta cccagtagac agcaaagtgc ccccaacttt
     5581 gtgcaattgc tccctgaata acgccagcca gaattacccc ggtagaaata ctgttagtaa
     5641 ataaggtggt agctgccccc gctcttccag gcattaaatc ctgaaaccat agcatcccaa
     5701 tacccgcaac aatgccgata aatacagcgt taaaaagttg cagcgtcatc aacgccatac
     5761 ggctatgaaa gaaaatcaat ccggtgtaaa acagtactcc tgccgccact gctatgacca
     5821 ccattcgccg cttaccataa cgtttgacat agtagccagc cagaatcatt gctggtattt
     5881 ccagtccagc tgccgtcccc atcaggaaac ccgccagttt gtctggcaat cctaactcgc
     5941 tactgatcca caacggcata tcaataatgt acatggtgtt gcaggtccac attaacgtcg
     6001 aggcgacaaa taacatccgt acgttactat cctgccagcc accttgcatt gataaagcat
     6061 tttccgacgg cagttctacc cgcgccacag acggaagcat aaatgcaatc aataccagac
     6121 tgagtgtgaa tatcccggcg gcaatcgaaa acatcaccac ttctcgcgcc gagttatccg
     6181 catattcccg cgccagagca aataactgtg gcattgccgt attggccaga gatgccagaa
     6241 gcacaccaca ggtgataagc gtcagataat gacgattaaa tgcaaacaat ggcgcattgc
     6301 cgatagccat caaacagcaa aatataatca gttttcgccg atcgccctga ctgtcagaac
     6361 gttttgccaa ccagaggctt acgccgatcc cagcaatagt attcaccgta taaaagagtc
     6421 cgatccagaa aggttgcgcg ccaacctcac gactcagaaa taagctcaat gtaggagcct
     6481 gtagcgcccc ggccaccccc atcataaaag cgaccagcat aaatgccgcg taaacaccgt
     6541 tcatacggcg agccatcgtc attatccaga tcatacgttc cctttttagc gcggcgagaa
     6601 taaaaaaaac cagcaggtat aatctgctgg cgggtgattt tacaccaata ctcagtcaca
     6661 catgatgcag gcaagtcaac tttcagaatt gcggtcatcc cactgcatca gtccttcaag
     6721 catggttaat cgttgtggga cgcttaacca acgcaaccag cacaacttcg ctgtcgcggt
     6781 aaaatagtgc tgataaaact gacgcatggg gcacctcctt gcttcatcgt taggaattat
     6841 tgacttaata tagggaaaat aaaattgctg tcttttgcgc aggagttccc cttttatgcc
     6901 atctgctcgt ctgcaacaac agttcatccg cctgtggcaa tgctgcgagg gtaaatcgca
     6961 ggacacaacg ctcaacgaac tggcagcgtt attgagctgc tcgcgtcgtc atatgcgtac
     7021 cctgctcaac accatgcagg atcgcggctg gctgacgtgg gaagcggaag tcgggcgcgg
     7081 taaacgctcg cgtctgacat tcctctatac cgggctggcg cttcagcaac agcgggcgga
     7141 agacctgctg gagcaggatc gtatcgacca actagtgcag ttggttggcg acaaagcgac
     7201 tgtgcggcaa atgctggttt ctcatctggg ccgcagcttc cgccaggggc ggcacatcct
     7261 gcgcgtgctc tactatcgtc cgttgcgtaa tctgctacct ggcagcgcat tgcgccgttc
     7321 cgaaacccat attgcccggc aaatcttcag ttcgctaacg cgcataaatg aggaaaatgg
     7381 ggaactggaa gcagacatcg cccaccactg gcagcaaata tcaccgcttc actggcgttt
     7441 ctttttgcgt ccaggagtcc attttcatca tggtcgtgaa ctggaaatgg acgacgtgat
     7501 cgcctcttta aaacgaatca atacgctgcc gctctattcg catattgcgg acattgtgtc
     7561 gccgacgccc tggacgctgg atatccatct cacgcaaccg gaccgctggt taccgttact
     7621 gctggggcaa gttccggcga tgatcctgcc gcgcgaatgg gaaaccctca gtaactttgc
     7681 cagccatccc atcggcaccg gtccgtatgc ggtgatccgc aacaccacca atcaactgaa
     7741 aattcaggca ttcgatgact tcttcggtta ccgggcatta atcgatgaag ttaacgtctg
     7801 ggttctgccg gaaattgccg acgagccagc tggaggtctg atgctaaaag gtccacaggg
     7861 tgaggaaaaa gagattgaaa gccgcctgga ggaaggttgc tactatttac tattcgacag
     7921 ccgcacccat cgcggagcga atcagcaagt cagggactgg gtaaactatg tgctttctcc
     7981 aactaatctg gtctatttcg ctgaggaaca gtaccagcaa ctgtggttcc cggcttatgg
     8041 actgctcccc cgttggcacc atgcccgcac cataaagagc gaaaaaccgg ctggcctgga
     8101 aagcctcacc ctgacctttt atcaggatca cagtgagcat cgggtgattg ccgggatcat
     8161 gcagcagatt ctggcaagtc accaggtcac gctggaaatc aaagagatca gctacgatca
     8221 gtggcatgaa ggagagatcg agagcgatat ctggcttaat agcgccaact ttacgctgcc
     8281 gctggatttt tcgctgttcg cgcacttgtg cgaggtgccg ctgctccaac actgtattcc
     8341 gatcgactgg caagccgacg ccgcccgctg gcgcaatggc gaaatgaacc tggcgaactg
     8401 gtgccagcaa ctggtcgcca gtaaagcaat ggtgccgctt atccaccact ggctgatcat
     8461 tcagggacaa cgcagtatgc gcggcctgcg tatgaatacc ctcggctggt tcgattttaa
     8521 atcagcgtgg tttgcgccgc cggatccatg attgctggta gataacaaaa tcactacact
     8581 aacgccgttc tcaacggggt gccacgcaaa cgcgtgcgct gagaaaatac ccgtcgaacc
     8641 tgatccggat aacgccggcg aagggatttg aggctccttc tcaagtcctt tgccactctt
     8701 ttttgaggtg caaagtgtta aaaaaatgtc ttcccctgct gttgctgtgc acagcgcccg
     8761 ttttcgctaa acccgttctg actgtttata cctacgattc cttcgccgcc gactgggggc
     8821 ctggtccaaa gatcaaaaaa gcttttgaag ccgactgtaa ctgcgaactg aaactggtgg
     8881 cgctggaaga tggcgtttcg cttctcaacc gtctacggat ggaaggcaaa aatagtaaag
     8941 ccgatgtggt gctggggctg gataacaatc tgttagacgc cgccagtaaa accggactat
     9001 ttgccaaaag cggtgtggca gcggatgccg ttaacgttcc cggcggctgg aataatgaca
     9061 ctttcgtccc gtttgattac ggctatttcg ccttcgtcta tgacaagaac aaactgaaaa
     9121 acccgccgca aagcctgaaa gaattggttg agagcgatca aaactggcgg gtgatttatc
     9181 aggatccgcg caccagtacg ccggggctgg gcctgctgtt gtggatgcaa aaagtctatg
     9241 gcgatgacgc cccacaagcc tggcaaaaac tggcgaagaa aaccgtcacg gtcaccaaag
     9301 gctggagcga agcctacggc ctgtttttaa aaggtgaaag cgatctggta ctgagttaca
     9361 ccacctctcc ggcttatcac attctcgaag agaaaaaaga taactacgcc gccgcgaact
     9421 ttagcgaagg tcactatctg caggtggaag tcgccgcccg caccgctgcc agcaagcagc
     9481 cggagctggc gcaaaaattc ctccagttta tggtttctcc ggcttttcag aatgcgatcc
     9541 caaccggtaa ctggatgtat ccggtggcaa atgtcacgct gcctgccggg tttgaacaat
     9601 tgaccaaacc ggccaccacg ctggagttca caccagctga agtggcggca caacgtcagg
     9661 catggattag cggatggcaa cgcgccgtca gccgttaatt cccggctggt taattccagg
     9721 tgtaagcgcc gccacgctgg tggtagcggt tgcgctcgcg gcgtttctcg ccctgtggtg
     9781 gaacgcgccg cagggtaact gggtggcagt ctggcaggac agctacctgt ggcatgtggt
     9841 gcgcttctcc ttctggcagg cgtttctctc ggcgctactc tctgtcgtac ccgcgatatt
     9901 cctcgcccgc gccctctatc gcaggcgctt tccgggtcgg ctggcgctgt tgcgtctgtg
     9961 cgcaatgacc ttgatcctcc cggtgctggt tgctgttttc ggcattctta gcgtctatgg
    10021 tcgccagggc tggctggcat cgctctgcca atcgctcggt ctggagtgga ccttttcgcc
    10081 ctacggcctg caaggtattt tgctggcgca cgtatttttt aatctgccga tggcgagccg
    10141 cttattactc caggcactgg aaaacattcc cgacgaacaa cgtcagcttg ccgcccagct
    10201 tgggatgcgc ggctggcatt ttttccgctt cgtcgaatgg ccgtggttac ggcgacaaat
    10261 cccgccggtt gctgcactta tctttatgct ctgtttcgcc agcttcgcca ccgtgctatc
    10321 actgggcggc ggtccgcagg cgaccactat cgagctggct atttatcagg cgctgagtta
    10381 cgactacgat cctgcccgcg cggcgatgct ggcgctgatc cagatggtgt gttgccttgg
    10441 gctggtactg ttgagtcagc gattgagtaa ggccattgcg ccaggcacca cgctgctgca
    10501 aggctggcgc gacccggacg atcgtctgca tagccgcatt tgcgacacgg tgttaatagt
    10561 gctggcgttg ctgctgttgt tgccaccgtt gctggcggtg atcgtcgatg gggtaaatcg
    10621 ccagttgccg gaagtgctgg cacaaccggt gctgtggcag gcgctgtgga cctcgttgcg
    10681 tattgcgctg gcggcaggtg tattgtgcgt agtgctgacc atgatgctgc tatggagcag
    10741 tcgcgaactt cgggcacggc agaaaatgct ggcgggtcag gcgctggaga tgagcggcat
    10801 gttgattctc gccatgccgg ggattgtgct ggctaccggc ttctttttac tgctcaacaa
    10861 cactatcggc ctgcaacaat ctgctgacgg cattgtgatt ttcaccaatg cgttaatggc
    10921 gatcccttat gcgctgaaag tactggaaaa cccgatgcgc gatatcaccg cccgctacag
    10981 tatgttgtgt cagtcgctgg gcattgaagg ctggtcgcgc ttaaaagtgg tggagctgcg
    11041 cgccctgaaa cgtccactgg cgcaggcgct ggcctttgcc tgcgtgctgt cgattggtga
    11101 ttttggcgtg gtggcgttgt tcggtaacga tgatttccgt accctgccgt tttatctcta
    11161 ccagcaaatt ggctcctatc gcagccagga cggcgcggtc accgcgttaa ttctgctgct
    11221 actctgtttt ctgctgttta ccgtgattga aaaactaccg gggcgaaatg ttaaaactga
    11281 ctgatatcac ctggctttac caacatttgc cgatgcgttt tagcttaacg gtggaacgcg
    11341 gcgagcaggt ggcgatcctc gggccaagcg gcgcaggtaa aagtaccctg ctgaatttga
    11401 ttgccggttt tctgacgcca gccagcggtt cgctgactat cgatggcgtt gatcacacca
    11461 cgacgccgcc gtcacgccgt ccggtgtcga tgctgtttca ggagaacaac ctgttcagcc
    11521 acctgacggt cgcgcagaac atcgggctgg ggcttaatcc aggattgaag ctgaacgcgg
    11581 cacagcagga gaaaatgcac gctatcgccc gtcagatggg gattgataat ttaatggcgc
    11641 ggttaccggg cgagctttcc ggcggccagc gacagcgcgt ggcgttagcg cgttgtctgg
    11701 tgcgcgaaca gccgatttta ttgctcgatg aaccgttctc tgcgctcgat ccggcgttac
    11761 gtcaggagat gctgacgctg gtgagcacga gctgccagca gcaaaaaatg acgctattga
    11821 tggtgtcgca cagtgtggaa gatgcggcgc ggatcgccac acgctcggtg gtggtcgccg
    11881 acgggcgcat cgcctggcag ggtaagactg aagaattgtt gagcggtaag gcgagtgctt
    11941 cggcaatatt ggggattacg ggttagtatg cactgtcaga tgcggcgtga acaccttatc
    12001 cgacctacgg acagtgcgtt ttgtaggcct gataagaccg gtcagcgtcg catcaggcaa
    12061 cccgcacaag acaatcccct aaaccccaac cactttacgc aaaatatcga tatacaccgg
    12121 catcaacggg tggcgaatta acaccaccag cgccaccacg ccgatggcag aaatcaacgg
    12181 cgtcagccac aacaaacggc cgcgcgacaa ataatgactt aaacgatcgg ttgctttacc
    12241 gctgcgccat aaccgccagc acagccagcc accaacccac aaaaataccg ccgtcgccag
    12301 cagcaaccat ttaaactcgc cgctctgcat tccggctgga atatcgatcg ccgcgcccgc
    12361 cagaatccca ggcaggaagt aaaacggtgg ccacagcagg cagccgataa tattcggcgt
    12421 aatgaatttt gccaccggca gatccagcat tcccgccacc attggcacca gcggacgcgt
    12481 cgggccaaca aagcgaccga ccagaatggt gaacatgctg tgttgatgca acgcatgttc
    12541 agttttatcg agtaatgctt tgtttttctt cagaaatgac cagcgatgca acggcttttt
    12601 aaaacgccag cccagccaga aggagatcca gtcgcccagc agacaaccga caatccctgc
    12661 cagccaggcg tgccagaaac ttaactcgcc gctgccaatc agcgctccca gccccgccat
    12721 cagcaccgta ccgggtagaa tcaaaccgac cagcgccagc gactccagaa aggccaccaa
    12781 caccaccgcc atcaatgaat acacggtaga ttgggtaata aagtgttcca gcaatgcttg
    12841 cataatgtgc ctgtcaaatg gacgaagcag ggattctgca aaccctatgc tactccgtca
    12901 agccgtcaat tgtctgattc gttaccaatt atgacaactt gacggctaca tcattcactt
    12961 tttcttcaca accggcacgg aactcgctcg ggctggcccc ggtgcatttt ttaaataccc
    13021 gcgagaaata gagttgatcg tcaaaaccaa cattgcgacc gacggtggcg ataggcatcc
    13081 gggtggtgct caaaagcagc ttcgcctggc tgatacgttg gtcctcgcgc cagcttaaga
    13141 cgctaatccc taactgctgg cggaaaagat gtgacagacg cgacggcgac aagcaaacat
    13201 gctgtgcgac gctggcgata tcaaaattgc tgtctgccag gtgatcgctg atgtactgac
    13261 aagcctcgcg tacccgatta tccatcggtg gatggagcga ctcgttaatc gcttccatgc
    13321 gccgcagtaa caattgctca agcagattta tcgccagcag ctccgaatag cgcccttccc
    13381 cttgcccggc gttaatgatt tgcccaaaca ggtcgctgaa atgcggctgg tgcgcttcat
    13441 ccgggcgaaa gaaacccgta ttggcaaata ttgacggcca gttaagccat tcatgccagt
    13501 aggcgcgcgg acgaaagtaa acccactggt gataccattc gcgagcctcc ggatgacgac
    13561 cgtagtgatg aatctctcct ggcgggaaca gcaaaatatc acccggtcgg caaacaaatt
    13621 ctcgtccctg atttttcacc accccctgac cgcgaatggt gagattgaga atataacctt
    13681 tcattcccag cggtcggtcg ataaaaaaat cgagataacc gttggcctca atcggcgtta
    13741 aacccgccac cagatgggca ttaaacgagt atcccggcag caggggatca ttttgcgctt
    13801 cagccatact tttcatactc ccgccattca gagaagaaac caattgtcca tattgcatca
    13861 gacattgccg tcactgcgtc ttttactggc tcttctcgct aacccaaccg gtaaccccgc
    13921 ttattaaaag cattctgtaa caaagcggga ccaaagccat gacaaaaacg cgtaacaaaa
    13981 gtgtctataa tcacggcaga aaagtccaca ttgattattt gcacggcgtc acactttgct
    14041 attccatagc atttttatcc ataagattag cggatcctac ctgacgcttt ttatcgcaac
    14101 tctctactgt ttctccatac ccgttttttt ggatggagtg aaacgatggc gattgcaatt
    14161 ggcctcgatt ttggcagtga ttctgtgcga gctttggcgg tggactgcgc cagcggtgaa
    14221 gagatcgcca ccagcgtaga gtggtatccc cgttggcaaa aagggcaatt ttgtgatgcc
    14281 ccgaataacc agttccgtca tcatccgcgt gactacattg agtcaatgga agcggcactg
    14341 aaaaccgtgc ttgcagagct tagcgtcgaa cagcgcgcag ctgtggtcgg gattggcgtt
    14401 gacagtaccg gctcgacgcc cgcaccgatt gatgccgacg gtaacgtgct ggcgctgcgc
    14461 ccggagtttg ccgaaaaccc aaacgcgatg ttcgtattgt ggaaagacca cactgcggtt
    14521 gaagaagcgg aagagattac ccgtttgtgc cacgcgccgg gcaacgttga ctactcccgc
    14581 tacattggtg gtatttattc cagcgaatgg ttctgggcaa aaatcctgca tgtgactcgc
    14641 caggacagcg ccgtggcgca atctgccgca tcgtggattg agctgtgcga ctgggtgcca
    14701 gctctgcttt ccggtaccac ccgcccgcag gatattcgtc gcggacgttg cagcgccggg
    14761 cataaatctc tgtggcacga aagctggggc ggcttgccgc cagccagttt ctttgatgag
    14821 ctggacccga tcctcaatcg ccatttgcct tccccgctgt tcactgacac ctggactgcc
    14881 gatattccgg tgggcacctt atgcccggaa tgggcgcagc gtctcggcct gcctgaaagc
    14941 gtggtgattt ccggcggcgc gtttgactgc catatgggcg cagttggcgc aggcgcacag
    15001 cctaacgcac tggtaaaagt tatcggtact tccacctgcg acattctgat tgccgacaaa
    15061 cagagcgttg gcgagcgggc agttaaaggt atttgcggtc aggttgatgg cagcgtggta
    15121 cctggattta tcggtctgga agcaggccaa tcggcgtttg gtgatatcta cgcctggttt
    15181 ggtcgcgtac tcggctggcc gctggaacag cttgccgccc agcatccgga actgaaagcg
    15241 caaatcaacg ccagccagaa acaactgctt ccggcgctga ccgaagcatg ggccaaaaat
    15301 ccgtctctgg atcacctgcc ggtggtgctc aactggttta acggccgccg cacaccgaac
    15361 gctaaccaac gcctgaaagg ggtgattacc gatcttaacc tcgctaccga cgctccgctg
    15421 ctgtttggcg gtttgattgc tgccaccgcc tttggcgcac gcgcaatcat ggagtgcttt
    15481 accgatcagg ggatcgccgt caataacgtg atggcgctgg gcggcatcgc gcggaaaaac
    15541 caggtcatta tgcaggcctg ctgcgacgtg ctgaatcgcc cgctgcaaat tgttgcctct
    15601 gaccagtgct gtgcgctcgg tgcggcgatt tttgctgccg tcgccgcgaa agtgcacgca
    15661 gacatcccat cagcccagca aaaaatggcc agtgcggtag agaaaaccct gcaaccgcgc
    15721 agcgaacaga cacaacgctt tgaacagctt tatcgccgct atcagcaatg ggcgatgagc
    15781 gccgaacaac actatcttcc aacttccgcc ccggcacagg ctgcccaggc cgttccgact
    15841 ctataaggac acgataatga cgatttttga taattatgaa gtgtggtttg tcattggcag
    15901 ccagcatctg tatggcccgg aaaccctgcg tcaggtcacc caacatgccg agcacgttgt
    15961 taatgcgctg aatacggaag cgaaactgcc ctgcaaactg gtgttgaaac cgctgggcac
    16021 cacgccggat gaaatcaccg ctatttgccg cgacgcgaat tacgacgatc gttgcgctgg
    16081 tctggtggtg tggctgcaca ccttctcccc ggccaaaatg tggatcaacg gcctgaccat
    16141 gctcaacaaa ccgttgctgc aattccacac ccagtttaac gcggcgctgc cgtgggacag
    16201 tatcgatatg gactttatga acctgaacca gactgcacat ggcggtcgcg agttcggctt
    16261 cattggcgcg cgtatgcgtc agcaacatgc cgtggttacc ggtcactggc aggataaaca
    16321 agcccatgag cgtatcggct cctggatgcg tcaggcggtc tctaaacagg atacccgtca
    16381 tctgaaagtc tgccgttttg gcgataacat gcgtgaagta gcggtcaccg atggtgataa
    16441 agttgccgca cagatcaagt tcggtttctc cgtcaatacc tgggcggttg gcgatctggt
    16501 gcaggtggtg aactccatca gcgacggcga tgttaacgcg ctggtcgatg agtacgaaag
    16561 ctgctacacc atgacgcctg ccacacaaat ccacggcgaa aaacgacaga acgtgctgga
    16621 agcggcgcgt attgagctgg ggatgaagcg tttcctggaa caaggtggct tccacgcgtt
    16681 caccaccacc tttgaagatt tgcacggtct gaaacagctt ccaggtctgg ccgtacagcg
    16741 tctgatgcag cagggttacg gctttgcggg cgaaggcgac tggaaaaccg ccgccctgct
    16801 tcgcatcatg aaggtgatgt caaccggtct gcagggcggc acctccttta tggaggacta
    16861 cacctatcac ttcgagaaag gtaatgacct ggtgctcggc tcccatatgc tggaagtctg
    16921 cccgtcgatt gccgtagaag agaaaccgat cctcgacgtt cagcatctcg gtattggtgg
    16981 taaggacgat cctgcccgac tgatcttcaa tacccaaacc ggtccagcga ttgtcgccag
    17041 cctgattgat ctcggcgatc gttaccgtct gctggttaac tgtatcgaca cggtgaaaac
    17101 accgcactcc ctgccgaaac tgccggtggc gaatgcgctg tggaaagcgc aaccggatct
    17161 gccaactgct tccgaagcgt ggatcctcgc tggtggcgcg caccataccg tcttcagcca
    17221 tgcgctgaac ctcaacgata tgcgtcagtt cgccgagatg cacgacattg aaatcacggt
    17281 gattgataac gacacccgcc tgccagcgtt taaagacgca ctgcgctgga acgaagtgta
    17341 ttacggattt cgtcgctaag tagccacatc aggtatgtaa cgcctgatgc gacgctgacg
    17401 cgtcttatct ggcctacacg ctgcgatttt gtaggccgga taagcaaagc gcatccggca
    17461 ttcaacgcct gatgcgacgc tggcgcgtct tatcaggcct acgcgctgcg attttgtaga
    17521 ccggataagc gaagcgcatc cggcacgaag gagtcaacat gttagaagat ctcaaacgcc
    17581 aggtattaga agccaacctg gcgctgccaa aacacaacct ggtcacgctc acatggggca
    17641 acgtcagcgc cgttgatcgc gagcgcggcg tctttgtgat caaaccttcc ggcgtcgatt
    17701 acagcgtcat gaccgctgac gatatggtcg tggttagcat cgaaacaggt gaagtggttg
    17761 aaggtacgaa aaagccctcc tccgacacgc caactcaccg gctgctctat caggcattcc
    17821 cctccattgg cggcattgtg catacgcact cgcgccacgc caccatctgg gcgcagtcgg
    17881 gtcagtcgat tccagcaacc ggcaccaccc acgccgacta tttctacggc accattccct
    17941 gcacccgcaa aatgaccgac gcagaaatca acggcgaata tgagtgggaa accggtaacg
    18001 tcatcgtaga aacctttgaa aaacagggta tcgatgcagc gcaaatgccc ggcgttctgg
    18061 tccattccca cggcccgttt gcatggggca aaaatgccga agatgcggtg cataacgcca
    18121 tcgtgctgga agaggtcgct tatatggaga tattctgccg tcagttagcg ccgcagttac
    18181 cggatatgca gcaaacgctg ctggataaac actatctgcg taagcatggc gcgaaggcat
    18241 attacgggca gtaatgactg tataaaacca cagccaatca aacgaaacca ggctatactc
    18301 aagcctggtt ttttgatgga ttttcagcgt ggcgcaggca ggttttatct taacccgaca
    18361 ctggcgggac accccgcaag ggacagaagt ctccttctgg ctggcgacgg acaacgggcc
    18421 gttgcaggtt acgcttgcac cgcaagagtc cgtggcgttt attcccgccg atcaggttcc
    18481 ccgcgctcag catattttgc agggtgaaca aggctttcgc ctgacaccgc tggcgttaaa
    18541 ggattttcac cgccagccgg tgtatggcct ttactgtcgc gcccatcgcc aattgatgaa
    18601 ttacgaaaag cgcctgcgtg aaggtggcgt taccgtctac gaggccgatg tgcgcccgcc
    18661 agaacgctat ctgatggagc ggtttatcac ctcaccggtg tgggtcgagg gtgatatgca
    18721 caatggcact atcgttaatg cccgtctgaa accgcatccc gactatcgtc cgccgctcaa
    18781 gtgggtttct atagatattg aaaccacccg ccacggtgag ctgtactgca tcggcctgga
    18841 aggctgcggg cagcgcatcg tttatatgct ggggtcggag aatggcgacg cctcctcgct
    18901 tgatttcgaa ctggaatacg tcgccagccg cccgcagttg ctggaaaaac tcaacgcctg
    18961 gtttgccaac tacgatcctg atgtgatcat cggttggaac gtggtgcagt tcgatctgcg
    19021 aatgctgcaa aaacatgccg agcgttaccg tcttccgctg cgtcttgggc gcgataatag
    19081 cgagctggag tggcgcgagc acggctttaa aaacggcgtc ttttttgccc aggctaaagg
    19141 tcggctaatt atcgacggta tcgaggcgct gaaatccgcg ttctggaatt tctcttcatt
    19201 ctcgctggaa actgtcgctc aggagctatt aggcgaagga aaatctatcg ataacccgtg
    19261 ggatcgaatg gacgaaattg accgccgttt cgccgaagat aaacctgcgc tggcaactta
    19321 taacctgaaa gattgcgagc tggtgacgca gatcttccac aaaactgaaa tcatgccatt
    19381 tttactcgaa cgggcaacgg tgaacggcct gccggtggac cgacacggcg gttcggtggc
    19441 ggcatttggt catctctatt ttccgcgaat gcatcgcgct ggttatgtcg cgcctaatct
    19501 cggcgaagtg ccgccgcacg ccagccctgg cggctacgtg atggattcac ggccagggct
    19561 ttatgattca gtgctggtgc tggactataa aagcctgtac ccgtcgatca tccgcacctt
    19621 tctgattgat cccgtcgggc tggtggaagg catggcgcag cctgatccag agcacagtac
    19681 cgaaggtttt ctcgatgcct ggttctcgcg agaaaaacat tgcctgccgg agattgtgac
    19741 taacatctgg cacgggcgcg atgaagccaa acgccagggt aacaaaccgc tgtcgcaggc
    19801 gctgaaaatc atcatgaatg ccttttatgg cgtgctcggc accaccgcct gccgcttctt
    19861 cgatccgcgg ctggcatcgt cgatcaccat gcgtggtcat cagatcatgc ggcaaaccaa
    19921 agcgttgatt gaagcacagg gctacgacgt tatctacggc gataccgact caacgtttgt
    19981 ctggctgaaa ggcgcacatt cggaagaaga agcggcgaaa atcggtcgtg cactggtgca
    20041 gcacgttaac gcctggtggg cggaaacgct gcaaaaacaa cggctgacca gcgcattaga
    20101 actggagtat gaaacccatt tctgccgttt tctgatgcca accattcgcg gagccgatac
    20161 cggcagtaaa aagcgctacg ccgggctgat tcaggagggc gataaacagc ggatggtgtt
    20221 taaagggctg gaaaccgtgc gcaccgactg gacgccgctg gcccagcagt ttcagcagga
    20281 gctatacctg cgcatcttcc gcaacgagcc atatcaggaa tatgtacgcg aaaccatcga
    20341 caaactgatg gcgggtgaac tggatgcgcg actggtttac cgtaaacgcc ttcgccgtcc
    20401 gctgagcgag tatcagcgta atgtgccgcc tcatgtacgc gccgctcgcc ttgccgatga
    20461 agaaaaccaa aagcgtggtc gccccttgca atatcagaat cgcggcacca ttaagtacgt
    20521 atggaccacc aacggcccgg agccgctgga ctaccaacgt tcaccactgg attacgaaca
    20581 ctatctgacc cgccagctac aacccgtggc ggagggaata ctccctttta ttgaggataa
    20641 ttttgctaca cttatgaccg ggcaacttgg gctattttga gcaaaaaaag agttcgccag
    20701 ataccatttt gatgcgtgac gaatgctttg ccatccagta ccatagcgcc ctttccattc
    20761 ctggacctga ataacaccac tacctcataa gcacggtagc gggtggttat tgcctgcaat
    20821 taaagatata gagccgaaca catatgcctt ttacacttgg tcaacgctgg atcagcgata
    20881 cagaaagcga attgggactt ggaaccgttg tcgcggtgga tgcgcgaact gtcactttac
    20941 ttttcccatc tactggtgaa aaccgtctgt acgcacgcag tgattccccc gtgacccgcg
    21001 tgatgttcaa ccctggtgat accattacca gccatgacgg ctggcagatg caagtcgaag
    21061 aagtaaaaga agaaaatggc ttgctgacct atatcggtac tcgcctggat actgaagagt
    21121 ccggcgtagc cctgcgtgaa gttttccttg atagcaaact ggtgttcagc aaaccgcagg
    21181 accgcctgtt tgccgggcag attgaccgta tggaccgctt tgcgctgcgt tatcgcgcgc
    21241 gtaagtattc cagcgaacag ttccgtatgc cgtacagcgg cctgcgcggt cagcgtacca
    21301 gcctgatccc gcaccagctc aacatcgctc atgatgttgg ccgccgccac gcgccgcgcg
    21361 tcctgctggc tgacgaagtg ggtttaggga aaaccattga agccgggatg atcctgcatc
    21421 agcaactgct ctctggcgct gctgaacgtg tgctgattat cgtcccggaa accttacagc
    21481 atcagtggct ggtagaaatg ctgcgccgtt tcaacctgcg ctttgctctg tttgatgatg
    21541 agcgttatgc cgaagctcag cacgatgctt acaacccgtt cgacaccgaa cagctggtga
    21601 tttgctcgct ggattttgcc cgtcgtagca aacagcgcct ggaacatctc tgtgaagccg
    21661 aatgggacct gctggtggtc gatgaagcgc atcacctggt gtggagcgaa gatgcgccaa
    21721 gccgtgaata tcaggccatt gaacaactgg cagagcacat gccgggcgtt ctgctgctga
    21781 ccgcgacccc ggaacagctg gggatggaaa gccacttcgc ccgtctgcgt ctgctggacc
    21841 cgaaccgttt ccacgatttt gcgcagttcg ttgaagagca gaaaaattat cgtccggttg
    21901 cggacgccgt tgccatgctg ctggcaggta acaaactgag caatgacgaa ctgaacatgc
    21961 tcggcgagat gatcggcgag caggatatcg agccgctgtt gcaggcagca aacagcgaca
    22021 gcgaagatgc ccagagcgcc cgtcaggagc tggtttcgat gctgatggat cgccacggca
    22081 ccagccgcgt gctgttccgt aacacgcgta acggtgtgaa aggattcccg aaacgcgagc
    22141 tgcacaccat taagctgccg ctaccgacgc agtatcagac ggctattaaa gtctccggca
    22201 ttatgggcgc acgtaaaagt gcggaagatc gtgctcgcga tatgctctac ccggagcgta
    22261 tttatcagga atttgaaggt gataacgcca cctggtggaa cttcgatccg cgcgttgagt
    22321 ggctgatggg ctacctgacc agccatcgct ctcagaaagt gctggtgatc tgcgccaaag
    22381 ctgccactgc gctgcaactg gagcaggtac tgcgcgaacg tgaaggtatt cgcgctgcgg
    22441 tgttccacga aggtatgtcg attatcgaac gtgaccgcgc tgccgcctgg tttgccgaag
    22501 aagacaccgg cgcacaggta ctgctgtgct cagaaatcgg ttctgaagga cgtaacttcc
    22561 agttcgccag ccacatggtg atgtttgacc tgccattcaa cccggatcta ctggagcagc
    22621 gtattggtcg tctggatcgt atcggccagg cgcacgatat tcagatccat gtgccttatc
    22681 tggagaaaac cgctcagtcg gtgctggtgc gctggtatca cgaaggtctg gatgcatttg
    22741 agcacacctg cccgaccgga cgcactattt acgatagcgt atacaacgat ctgattaact
    22801 atctggcttc accggatcaa accgaaggct ttgacgatct gatcaaaaac tgccgcgagc
    22861 aacatgaagc gctgaaagca cagctggaac agggtcgtga ccgcctgctg gaaatccact
    22921 ccaacggtgg cgaaaaagcc caggcactgg cagaaagcat tgaagagcag gatgacgata
    22981 ccaacctgat cgccttcgcc atgaacctgc tcgatattat cggtatcaat caggacgatc
    23041 gcggcgacaa catgatcgtg ctgacgccgt ccgatcatat gctggtgccg gacttccctg
    23101 gcctgtcgga agatggcatc accatcacct ttgatcgtga agtggcgctg gcgcgtgaag
    23161 atgcacagtt tattacctgg gagcatccgc tgatccgcaa cggtctggat ctgatccttt
    23221 ctggcgatac cggtagcagc acgatttcac tgttaaaaaa caaagcgttg ccggtaggta
    23281 cgctgttggt ggaactgatt tatgtggttg aagcccaggc tccgaagcag ttgcagctca
    23341 accgcttcct gccaccgacg ccggtacgta tgctgctgga taaaaacggc aacaacctgg
    23401 cggcgcaggt agagtttgaa acctttaacc gccagcttaa cgcggttaac cgtcacaccg
    23461 gcagcaaact ggttaacgcc gtgcagcagg atgttcacgc tatccttcaa ctgggtgaag
    23521 cgcagatcga gaaatctgcc cgtgcattga ttgatgcagc gcgtaacgaa gccgacgaaa
    23581 aactgtctgc cgagctgtct cgtctggaag ctctgcgtgc agtgaacccg aacattcgtg
    23641 acgacgaact gaccgccatt gagagcaacc gtcagcaggt aatggaaagc ctggatcagg
    23701 caggttggcg tctggatgcc ctgcgtttga tcgttgtaac gcatcagtaa cggagccgaa
    23761 aatggggatg gaaaactaca atccaccgca ggaaccctgg ttggttatcc tgtatcagga
    23821 tgaccacatt atggtggtta acaagccgag cggtttgttg tctgtgccgg ggcgtctgga
    23881 agagcacaaa gacagcgtga tgacgcgcat tcagcgtgat tatccgcagg cagaatcggt
    23941 gcatcgtctg gatatggcta ccagcggcgt gattgtagtg gcgctgacca aagccgcgga
    24001 gcgggagtta aaacgccagt tccgcgagcg cgagccgaaa aagcagtatg tggcccgcgt
    24061 ctgggggcat ccatcccctg cggaaggtct ggtggatctg ccgctgattt gcgactggcc
    24121 aaaccgcccg aaacagaaag tctgttacga aacgggtaaa cctgcgcaga cggaatatga
    24181 agtggtggag tatgcggcgg ataacacggc aagagtggtg ttaaaaccga ttactgggcg
    24241 ttcgcatcaa ttgcgtgtgc atatgctggc gctggggcat ccgattctcg gcgatcgttt
    24301 ttatgcatca ccagaagcga gagcgatggc accgcgtttg ttgctacatg cagagatgtt
    24361 gacgattacc catccggcgt atggcaatag tatgacgttt aaagcgccag cggattttta
    24421 atagtcacgc tggcgcagtt cggtaggcgg ataaggcgtt cacgccgaat ccggcaattg
    24481 tgcgccgatt gcctgatgcg acgcgggccg cgtcttatca ggcctacagt ttaaaactta
    24541 tttaaaccct ttctgctgct ttatcagctc atatgcctgc tgaatttcct gcgctttctg
    24601 cttcgccatc tccatcatct caggcggcaa acctttcgcc accagcttat cgggatggtg
    24661 ttcactcatc agcttacggt aggctcgttt aatggtggtc gcatcatccg tcggcttcac
    24721 acccagcaca ttacaggcat cttccagcgt cgggccacgc tgcgcttgct gccagttacc
    24781 accgccagat tgctgctgat aaccgccgcc aaactgtgca ccgccctgca tcatgcgcaa
    24841 aaactggtca aactgggcgc gggagatccc taattcttct gcaatgacat acagcaccgc
    24901 ccgttcattc gggtgcagtg aaccatcagc aaacgccgcc tgaatctgga tctccagaaa
    24961 catacgaatt aagtcaaaac gaccaaagca gacactgcga aactggcgca tcttttcgcg
    25021 cagcgggtaa ttgtctgatt ttcccacccg gaacgcgttt tgcgccgcag tacgggaagc
    25081 gccatgaagg ttcattcggt ccatcagctg gctggcgata tgaatatcag cctccgtgac
    25141 gcgacctttg gatttggtta aatgccccat cacttcaaaa gtggtggcaa aaaacagcgc
    25201 ctgacgctca cgctggttgg cgaaccacgc cattttacgg ctacgggctt tatcaaacat
    25261 atggccaatt aacaggccta acactacgcc ccaaaagccg ccgcccatca gtaaggccac
    25321 ggccacgcca atgatttttc cccaatactg catatattcc ccaaatcgac acacggatat
    25381 cagggctatc tcccacaata taaaggtgct tttaccgttt tccggctgca gtcaattgtg
    25441 ggacatcgcc tataatttgc attatcatac ctgtcattca atgccgtgcc taacaccact
    25501 gacgctattc ggacaggatt aacactagcg tagagatgac gagtacgtta gtctctgacc
    25561 gtttgtcacg cgcaacgtta ccgatgatgg aacaataaaa tcaacgtatg aaaaaacgta
    25621 tccccactct cctggccacc atgattgcca ccgcccttta tagtcaacag ggactggcag
    25681 ccgacctcgc ctcacagtgc atgttgggcg tgccaagcta tgaccgtcct ctggtacagg
    25741 gcgataccaa tgacttaccc gtgactatca atgctgacca cgcgaaaggg gactacccgg
    25801 atgacgccgt gtttactggc agcgtggata tcatgcaggg taacagccgt ctgcaggccg
    25861 acgaagtgca gctccatcaa aaagaggcac caggacaacc ggagccggta cgaaccgttg
    25921 atgcgctcgg taatgtccat tacgacgata accaggtgat cctcaaaggg ccgaaaggct
    25981 gggcgaatct gaacaccaaa gataccaacg tctgggaagg tgattaccag atggtgggtc
    26041 gccagggccg cggtaaagcg gacctgatga aacaacgtgg tgaaaaccgc tataccattc
    26101 tggataacgg tagctttacc tcctgtctgc cgggttctga cacctggagc gtggtaggta
    26161 gcgaaattat tcatgaccgc gaagaacaag ttgcggagat ctggaacgcc cgctttaagg
    26221 tgggtccagt accgatcttt tatagcccct atttgcagtt gccggtgggt gacaaacgtc
    26281 gctctggttt cttgatcccg aacgccaagt acaccaccac caactacttt gagttctacc
    26341 tgccatatta ctggaacatc gcgccaaata tggatgccac catcacgccg cattatatgc
    26401 atcgtcgtgg caacatcatg tgggagaacg aattccgcta cctctcccag gcgggcgctg
    26461 gcttgatgga actggactat ctgccttcag ataaagtcta tgaagatgaa cacccgaacg
    26521 atgacagttc acgtcgttgg ttgttctact ggcaacattc cggggtcatg gatcaagtgt
    26581 ggcgtttcaa cgtagactac accaaggtca gcgatcctag ctacttcaat gatttcgata
    26641 acaagtacgg ttccagtact gacggctacg caacgcaaaa attcagcgtt ggctatgcgg
    26701 tgcaaaactt caatgccacc gtttcaacca agcagttcca ggtctttagc gagcagaaca
    26761 ccagtagcta ctcggcagag ccgcagttag acgttaacta ctaccagaat gatgttggtc
    26821 cgtttgatac gcgtatttac ggccaggcag tgcactttgt taacaccaga gacgacatgc
    26881 ctgaagcaac ccgtgttcac ctggaaccga ccatcaattt gccgctctct aataactggg
    26941 gcagcatcaa taccgaagcg aagttgctgg caacccatta tcagcaaacc aatcttgact
    27001 ggtataactc cagaaacacg accaagctgg acgaatccgt taaccgcgtt atgccgcaat
    27061 tcaaagttga cggcaaaatg gtctttgaac gcgatatgga aatgctggct ccgggttata
    27121 cccaaacgct ggaaccgcgc gcgcagtatt tgtacgtgcc gtatcgcgat cagagcgaca
    27181 tctataacta cgactcgtct ctactgcaat ctgactactc tggcctgttc cgggaccgga
    27241 cttacggcgg tcttgaccgt attgcctccg ctaaccaggt gacgaccggt gtcacatctc
    27301 gcatatatga tgatgctgcc gttgaacatt ttaatatttc cgttggtcaa atctactatt
    27361 tcacggagtc tcgcactggc gatgacaaca taacatggga gaatgacgac aaaacgggct
    27421 cactggtgtg ggcaggcgat acttactggc gtatctccga gcgttgggga ttgcgtggcg
    27481 ggattcagta cgatacacgt ctggataacg tagcgaccag taactccagc attgaatacc
    27541 gtcgggatga agaccgtctg gtacagctga attaccgtta cgccagcccg gaatatattc
    27601 aggctacgct gcctaagtac tattccactg ctgagcaata taagaatggt atttcgcagg
    27661 taggtgctgt cgccagctgg ccaattgccg atcgttggtc cattgttggg gcctactact
    27721 acgacaccaa tgcgaacaag caagccgact ctatgttagg tgtgcaatac agctcctgct
    27781 gctatgcaat tcgcgtcggt tacgagcgga agctgaacgg ttgggataac gataaacaac
    27841 atgcggtata tgacaacgca atcggcttta acatcgaact tcgcggcctg agctccaact
    27901 acggtctggg tacgcaagag atgctgcgtt cgaacattct gccgtatcaa aacactttgt
    27961 gatttgttga tttaccacgt aatccgcagt gcggttaatt gaaatggaaa aagtatgaag
    28021 aactggaaaa cgctgcttct cggtatcgcc atgatcgcga ataccagttt cgctgccccc
    28081 caggtagtcg ataaagtcgc agccgtcgtc aataacggcg tcgtgctgga aagcgacgtt
    28141 gatggattaa tgcagtcggt aaaactgaac gctgcgcagg caaggcagca gcttcctgat
    28201 gacgcgacgc tgcgccacca aatcatggaa cgtttgatca tggatcaaat catcctgcag
    28261 atggggcaga aaatgggagt gaaaatctcc gatgagcagc tggatcaggc gattgctaac
    28321 atcgcgaaac agaacaacat gacgctggat cagatgcgca gccgtctggc ttacgatggt
    28381 ctgaactaca acacctatcg taaccagatc cgcaaagaga tgattatctc tgaagtgcgt
    28441 aacaacgagg tgcgtcgtcg catcaccatc ctgccgcagg aagtcgaatc cctggcgcag
    28501 caggtgggta accaaaacga cgccagcact gagctgaacc tgagccacat cctgatcccg
    28561 ctgccggaaa acccgacttc tgatcaggtg aacgaagcgg aaagccaggc gcgcgccatt
    28621 gtcgatcagg cgcgtaacgg cgctgatttc ggtaagctgg cgattgctca ttctgccgac
    28681 cagcaggcgc tgaacggcgg ccagatgggc tggggccgta ttcaggagtt gccgggtatc
    28741 ttcgcccagg cattaagcac cgcgaagaaa ggcgacattg ttggcccgat tcgttccggc
    28801 gttggcttcc atattctgaa agttaacgac ctgcgcggcg aaagcaaaaa tatctcggtg
    28861 accgaagttc atgctcgcca tattctgctg aaaccgtcgc cgatcatgac tgacgaacag
    28921 gcccgtgtga aactggaaca gattgctgcc gatatcaaga gtggtaaaac gacttttgct
    28981 gccgcagcga aagagttctc tcaggatcca ggctctgcta accagggcgg tgatctcggc
    29041 tgggctacac cagatatttt cgatccggcc ttccgtgacg ccctgacccg cctgaacaaa
    29101 ggtcaaatga gtgcaccggt tcactcttca ttcggctggc atttaatcga actgctggat
    29161 acccgtaatg tcgataaaac cgacgctgcg cagaaggatc gtgcataccg catgctgatg
    29221 aaccgtaagt tctcggaaga agcagcaagc tggatgcagg aacaacgcgc cagcgcctac
    29281 gttaaaatcc tgagcaacta atggttaaaa cccaacgtgt tgtgatcact cccggcgagc
    29341 ccgccgggat tggcccggac ttagttgtcc agcttgcaca gcgtgagtgg ccggtcgaac
    29401 tggttgtttg tgccgatgcc actctcctta ccgaccgggc agcgatgctc ggtttgccgc
    29461 tcaccctccg cccttattcc cccaactccc ctgcacaacc gcaaactgcg ggcacattaa
    29521 cgctacttcc tgtcgcgcta cgcgaatctg tcactgcggg gcagttagcg attgaaaatg
    29581 ggcattacgt ggtggagacg ctggcgcgag cgtgtgatgg ctgtctgaac ggtgaatttg
    29641 ctgcgctgat cacaggcccc gtgcataaag gcgtcattaa cgacgcaggt attccgttta
    29701 ctggtcatac cgagtttttc gaagagcgct cgcaggcgaa aaaagtggtg atgatgctgg
    29761 cgaccgaaga acttcgcgtg gcgctggcaa cgacgcattt accgctgcgc gatatcgcag
    29821 atgctatcac ccctgcactt ttgcacgaag tgattgctat tttgcatcac gatttgcgta
    29881 caaaatttgg tattgccgaa ccgcgcattc tggtctgcgg gctgaatccg cacgcgggcg
    29941 aaggcggtca tatgggtacg gaagagatag acaccattat tccggtgctc gacgagctgc
    30001 gggcgcaggg gatgatactc aacgggccgc tgcctgccga taccctgttt cagccgaaat
    30061 atctcgataa cgccgacgcc gtgctggcga tgtaccacga tcagggtctt cccgtgctaa
    30121 aataccaggg cttcgggcgc ggtgtgaaca ttacgctggg cctgcccttt attcgcacat
    30181 cagtggacca cggcaccgcg cttgaactgg cgggacgtgg cgaagccgat gtcggcagtt
    30241 ttattacggc gcttaatctc gccatcaaaa tgattgttaa cacccaatga ataatcgagt
    30301 ccaccagggc cacttagccc gtaaacgctt cgggcaaaac tttctcaacg atcagttcgt
    30361 gatcgacagc attgtttctg ccattaaccc gcaaaagggc caggcaatgg tcgaaatcgg
    30421 ccccggtctg gcggcattga ccgagccggt cggcgaacgt ctggaccagc tgacggtcat
    30481 cgaacttgac cgcgatctgg cggcacgtct gcaaacgcat ccattcttag gcccgaaact
    30541 gacgatttat cagcaggatg cgatgacctt taactttggc gaactggccg agaaaatggg
    30601 tcagccgctg cgtgttttcg gcaacctgcc ttataacatc tccacgccgt tgatgttcca
    30661 tctgtttagc tatactgatg ccattgccga catgcacttt atgttgcaaa aagaggtggt
    30721 gaatcgtctg gttgcaggac cgaacagcaa agcgtatggt cgattaagcg tcatggcgca
    30781 atactattgc aacgtgatcc cggtactgga agttccgccg tcagccttta caccaccacc
    30841 caaagtggat tccgccgtcg tgcgcctggt tcctcatgca acgatgcctc acccggttaa
    30901 agatgttcgt gtgttgagcc gcatcaccac cgaagccttt aaccagcgtc gtaaaaccat
    30961 tcgtaacagc ctcggcaacc tgtttagcgt cgaggtgtta acgggaatgg ggatcgaccc
    31021 ggcgatgcga gcggaaaata tctctgtcgc gcaatattgc cagatggcga actatctggc
    31081 ggagaacgcg cctttgcagg agagttaacg atgatcaatt cgccccgagt gtgtattcag
    31141 gttcaaagcg tctacattga ggcacaatct tcacctgata atgaacgtta cgtttttgct
    31201 tataccgtaa ccatacgcaa tctggggcga gcgccagtgc agttgttggg gcgttactgg
    31261 ctgatcacca atggcaatgg ccgtgaaacc gaagtccagg gcgaaggagt ggttggcgtc
    31321 cagccactta tcgcgcctgg cgaagagtac cagtacacca gcggtgcaat cattgaaacc
    31381 ccgctgggca ccatgcaggg tcactacgaa atgatcgatg aaaatggcgt ccctttcagc
    31441 atcgacattc ccgtattccg actcgccgtt cccacactca ttcattaaaa gaatatggcg
    31501 acatacctta ttggcgacgt tcatggttgt tacgatgaac tgatcgcatt gctgcataaa
    31561 gtagaattta cccctgggaa agataccctc tggctgacgg gcgatctggt cgcgcgcggc
    31621 ccgggttcgc tggatgttct gcgctatgtg aaatccttag gcgacagcgt acgtctggtg
    31681 ctgggcaatc acgatctgca tctgctggcg gtatttgccg ggatcagccg caataaaccg
    31741 aaagatcgcc tgacaccgct gctggaagcg ccggatgccg acgagctgct taactggctg
    31801 cgtcgccagc ctttgctgca aatcgacgaa gagaaaaagt tggtgatggc ccacgcaggg
    31861 atcacgccgc agtgggatct acagaccgcc aaagagtgcg cgcgcgatgt agaagcggtg
    31921 ctatcgagtg actcctatcc cttctttctc gacgctatgt acggcgatat gccaaataac
    31981 tggtcaccgg aattgcgggg gctgggaaga ctgcgtttta tcaccaacgc ctttacccgt
    32041 atgcgttttt gcttcccgaa cggtcaactg gatatgtaca gcaaagaatc gccggaagag
    32101 gcccctgccc cactgaaacc gtggtttgcg attcctggcc ctgtcgctga agaatacagc
    32161 atcgcctttg gtcactgggc atcgctggag ggcaaaggta cgccggaagg tatatacgcg
    32221 ctggataccg gctgctgctg gggtggtaca ttaacctgcc tgcgctggga agataaacag
    32281 tattttgtcc agccgtcgaa ccggcataag gatttgggcg aagcggcggc gtcttaaaca
    32341 cagcctgata taggaaggcc ggataagacg cgaccggcgt cgcatccggc actagccgta
    32401 aattctatac aaaattaccg ccgctccaga atctcaaagc aatagctgtg agagttctgc
    32461 gcatcagcat cgtggaattc gctgaatacc gattcccagt catccggctc gtaatccggg
    32521 aaatgggtgt cgccttccac ttctgcgtcg atatgcgtca gatacagttt ctgcgctttt
    32581 ggcaggaact gctcataaac gcgaccgccg ccaatcacca tgatttctgg tacgtcacca
    32641 cacgccgcga tggcttcatc caccgacttc acccacgtta cgcgatcgtc cgtacccggt
    32701 tgactgctga ggataatatt tttgcgtcct ggcaacggac gaccgattga ttcccaggta
    32761 tggcggccca taatcacggg tttatttaag gtgttgcgtt taaaccaggc gagatcggca
    32821 ggcaggttcc acggcatggc gttttccatg ccgataacgc gatctaccgc taacgccgca
    32881 atcagactga tcattgagat ttcccgataa aaaaaattgt cgccactata cgtaaagcgt
    32941 aaaccgtcgt cgactggtgc gaggatgatg ttgaggaaaa ttttatattc tgctggcgag
    33001 tccacgctct ctccctggac tcgccgcatt acaatgaaac aaaaacaaac agttagctgt
    33061 aaagtgtgat ttatgtcact ctttattagg atgagggttt cgtttccggt tcatccgcca
    33121 tgttgccggt atgtttacct tcttcggttc cctgccagcc atgtcgttga attaatgaca
    33181 gatgttcgcg gtcctcggta atgatctcac ttaacatcgc gctggtgcgt ttatagaccg
    33241 ccgcgcgggc tttggtgtcg ttctcaacca ttgccatctc ttccaccatc tgaatattaa
    33301 agcggcggaa cacatcggca cgttctcgcg cttcatacgg ccccagacct aaactttcca
    33361 gtgccagacg cccggttttc agcgcacctt cgaaggtttc acgctccggc ttttcaacgc
    33421 ctgcctgacg caaacgaatg tagtggtcga catcgcgggc gcgggcaata atctgcaaat
    33481 gcgggaagtg ttctttcacc atctctgtca gttgcaggtt ggtttgcgga tcgtcgatgg
    33541 cgttaatcag cacttccgct ttcgccgctc ccgcagattc cagtaaatcc atccgcgtgg
    33601 catcgccata aaacactttc ataccaaatt tacgcaaggt ttcgatatgg tccggatcgt
    33661 gatcgagcac caccattttc accccgctgg agagcagtaa acgtccggtg atctgcccaa
    33721 aacgaccgaa tccggcaatg attacccgcg gctgttcttc gtcgatctca tcggcttcac
    33781 gcgcctcttc agtagaagat tgctcaaggc gattgaggat caccagcaga atcggcgttg
    33841 ccgccatcga cagcgccacc gccagggtca gcgatttcgc ccactccggc tccagcacat
    33901 tcgccatctg cgccgcgcca aataccacaa aggcaaactc actgccctgc cctaacaaca
    33961 ccgcaaacca acgacgctgt ttatttggca cttgcaacgg tcgggcaatc agccacagca
    34021 tggcgatttt gatgatgagg aaaccgagca gcaaaatgac aatgcgcaat gggttttcaa
    34081 gcagcgtgcc aaagtctatc gacatgccaa caccgatgaa aaacagcccc aacagcaaac
    34141 ctttaaaggg ttcgatatcg ctctccagcg catgacggta ttccgagctt gccagcagta
    34201 cgcccgccag aaacgcgccc atcgccatcg acaagccgac ctcttccagc agcaaaccaa
    34261 agccaaacac gaggaataac gccacggcac taaacacttc ccgcaagcca gagcgggcta
    34321 caaaacgcag cgccggacgc gtgacatagc gccccagcaa taccaccagc accagcgcac
    34381 ccgccacttt taacgccgag agagcaaatg cgcccatcgt cgtcgaggca ctgctcgttg
    34441 ccagtagcgg aatcatcgcc accagcggga tcgccgcgat atcctggaac agcagcaccg
    34501 caaaggcact gcgacccatt tgcgtcacca tcagattgcg ttcattcatc gcctgcatgg
    34561 caatcgccgt agaggagagc gccagcgtca tgccgatcaa ttccgcgacc tgccagcgca
    34621 gcccaagtaa catgcagaac agccccagca ggccgccgca aatcaccatc tgcaatgcgc
    34681 caccgccgaa cactgccgca cgcagcttcc acagcctttg tggatcgagt tcgaggccga
    34741 taataaacag catcagcacc accccaatct cggcaaagtg cagaatagat tcggcatcgg
    34801 tcaccagtcg cagcccccac gggccaataa tgcagccggc gatcaggtag ccaagtaccg
    34861 atcccagacc aagacgtacc gcaatgggta caatcagcgc tgccgaaccg agataaatca
    34921 gcgcctgaat cagcgtatgg ctatccatga tgggcctcct gccattccag cagacgttgc
    34981 ttatagtgac gcgcctgccc ttcgagggtt tcgtcgtcac aaataaaggt gcagtgcatg
    35041 gcaaacggtg gcagccagtt cagcccgcag tagattgccg tcgcctgtag cggctgcgac
    35101 agcacatcaa agcccggatg cgcaccaatt tcaaaatggc tttccccgcc gccggtcgtc
    35161 accgcccaca gcaaatgttt gccatgcagc gccttgccgc cgtgaccgta agcccagccg
    35221 tgcgacaaaa ctttatcgat ccaaagttta agaagcggag gaatgctgta ccactgcatc
    35281 ggatgctgcc agacgatcag atcggcgcga gacagcgcct cctgctcggc ggcaatatcg
    35341 atattgaagt caggatagag ttgataaaga gagcgaattt cgacgccttc cagcgtcctt
    35401 gcctgttcaa gcatccgttt attcgcatgg gaatgatgcg gatacggatg cgcataaatt
    35461 ataagaatca taggtagccc gcgtgattac gcctttgttt tcccacaaag tgtagtcata
    35521 tattcacgcg gcttatagtc aataatattg attcagaaaa gagagaaatc tgaacaattt
    35581 accccattct ctgcccgcgg atcgtcatat tgctggtttg cgccaatgac atccctcgat
    35641 gtctccgggg caaacgctac ggaaatcaac aagccaaaca gcgagatacc cgcccccatt
    35701 agcatcgtgt tactgatacc gtaattattg ataaagatcg gcagtgccca ggtcgaaaca
    35761 atggtgccaa tacggcttaa ggacataatc acgcccacgg cagaggcgcg gatatctgtc
    35821 gggaagagtt cattaggata gagccactgc aaattacccg gcccgccaga gaaaaaggca
    35881 tacaccgcaa aggccatcac taccagccag atccccatat ccgggatcag ccccaaaacc
    35941 gccagcgcca gcgtcatcat ggcaaagctg ccaatcaaca atggacgccg tccggcagtg
    36001 tttaaccaca gcatcggcgg aatacagccg agcataaaga acaggctaat caccacgttc
    36061 cccagcgccg cgtttttgcc aacacccaat cccaacaaac caacgatttg cgggccaaag
    36121 gtgtaaatgg cgaacattgg gatcacctgg caggtccaga tggcggcaac aaacagaaca
    36181 aaaggaaaat ggcggcgatt aaacagatcg cgaaaacggg tttgctgcgg ctgctcttca
    36241 tcgaaagcca ccggttcgcc aaacagtttt atcatcatct cttcgcactc ttttactcgc
    36301 cctttgcgta ataaccagcg gggagattca ggcagttcga atcgaccaat caaaatcaac
    36361 aaacagggga tcgccgcgct acccagcatc cagcgccagc cgccttccac atcataaagc
    36421 cagtagccga ccagatcggc gcaggtcgcg ccgacatacc acatggcggc gataaagctg
    36481 atggaaaatg cccgctgacg ggtactggag aactcggtga tcattgaggt ggcgatggga
    36541 taatcggcac cgatgacaat gccgataagt acccgcatca ccaacagttc gacgggggat
    36601 gaaacaaaca tcgtcgccac cgatatcacg ccgatggcga tgatatcaat gaggaacatt
    36661 ttgcgccgtc cgactttatc ggaaatatag ccaaacagcg atgtgccaac gaacagcccg
    36721 gcgagcgttc ccgcgcccaa caagccaatc cagtcagcgt ccagttttag cgccggagtc
    36781 agttgctcca gcgccacgcc aatcattacc agtacataac catcca
//
LOCUS       DADMJB010000018        36621 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.018, whole genome shotgun sequence.
ACCESSION   DADMJB010000018 DADMJB010000000
VERSION     DADMJB010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 36621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36621
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.018"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..206)
                     /locus_tag="JN078_000832"
     CDS             complement(<1..206)
                     /locus_tag="JN078_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000151282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antA/AntB antirepressor family protein"
                     /protein_id="HAY9040120.1"
                     /translation="MTIEKSRFSSGAAPQPNVNTGVINGNDFAAIVPVIAGRIGGREA
                     NIVSAKALHKALGVGRDFTNWIKGR"
     gene            complement(220..651)
                     /locus_tag="JN078_000833"
     CDS             complement(220..651)
                     /locus_tag="JN078_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016535037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040121.1"
                     /translation="MEKKNRPLQAANSDIRVSDVTPLTKSLQAPKRTPKKHRARVYML
                     RTGIEGWTENDILRYCRLSSGRNYASELERRLDIQLERIDEKNPDGIGSHLRYRFTGR
                     GDVLKVIRLVNHNADAGGYQGLSQPEIADILNLYPDNLTAA"
     gene            complement(651..854)
                     /locus_tag="JN078_000834"
     CDS             complement(651..854)
                     /locus_tag="JN078_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001018038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family phage regulatory protein"
                     /protein_id="HAY9040122.1"
                     /translation="MNIDTIPTKGYIRRFRLAELLGVSVSTIDRKVRNGSLPRPVKLG
                     EKITAFDAVEIHNWLAERRGKVA"
     gene            complement(967..1805)
                     /locus_tag="JN078_000835"
                     /pseudo
     CDS             complement(967..1805)
                     /locus_tag="JN078_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000735989.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1901..3160)
                     /locus_tag="JN078_000836"
     CDS             complement(1901..3160)
                     /locus_tag="JN078_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014639344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HAY9040123.1"
                     /translation="MPKLTDMQIRAWIKSGERFEGRADGNGLYLRYREADKTPTWRFR
                     YKLAGKSRAMLIGSYSELSLSKARETAKELSARVALGYDVAGEKQKRKTEALAKMEAE
                     KNAMRVSELAAEYFERQILPRWKHPDILRRRIDKDINPCIGSMKVEDVKPRHIDDMLK
                     GIVDRGAPTIATDVLRWTRRIFDYGIKRHALEINPCSAFEVADAGGKEAARDRWLTRD
                     ELIQLFKAMRTAKGFSRQNEITFKLLLALCVRKMELCAARWEEFDLDGAVWHLPEERS
                     KNGDPIDIPLPSPAVEWLRELHTFSCNSAWVLPARKMQNRMIPHIQESTLPVALAKVR
                     AEMPDVPNFTIHDFRRTARTHLAALGVDPVVAERCLNHRIKGVEGIYNRHQYFDERKA
                     ALAQWADLLVALESGKDYNVTPLRRAN"
     gene            complement(3351..4214)
                     /locus_tag="JN078_000837"
     CDS             complement(3351..4214)
                     /locus_tag="JN078_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HAY9040124.1"
                     /translation="MIRSMTAYARREIKGEWGSATWEMRSVNQRYLETYFRLPEQFRS
                     LEPVVRERIRSRLTRGKVECTLRYEPDISAQGELILNEKLAKQLVTAANWVKMQSDEG
                     EINPVDILRWPGVMAAQEQDLDAIAAEILAALDGTLDDFIVARETEGQALKALIEQRL
                     EGVTAEVVKVRAHMPEILQWQRERLVAKLEDAQVQLENNRLEQELVLLAQRIDVAEEL
                     DRLEAHVKETYNILKKKEAVGRRLDFMMQEFNRESNTLASKSINAEVTNSAIELKVLI
                     EQMREQIQNIE"
     gene            4341..5057
                     /gene="rph"
                     /locus_tag="JN078_000838"
     CDS             4341..5057
                     /gene="rph"
                     /locus_tag="JN078_000838"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006803115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HAY9040125.1"
                     /translation="MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE
                     EGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAV
                     DLKALGEFTITLDCDVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVA
                     AVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLL
                     ALARGGIESIVATQKAALAN"
     gene            5123..5764
                     /gene="pyrE"
                     /locus_tag="JN078_000839"
     CDS             5123..5764
                     /gene="pyrE"
                     /locus_tag="JN078_000839"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HAY9040126.1"
                     /translation="MKPYQRQFIEFALGKQVLKFGEFTLKSGRKSPYFFNAGLFNTGR
                     DLALLGRFYAEALVDSGLEFDLLFGPAYKGIPIATTTAVALAEHHDLDLPYCFNRKEA
                     KDHGEGGNLVGSALQGRVMLVDDVITAGTAIRESMEIIQANGATLAGVLISLDRQERG
                     RGEISAIQEVERDYNCKVISIITLKDLIAYLEEKPEMAEHLAAVKAYREEFGV"
     gene            complement(5801..6397)
                     /gene="slmA"
                     /locus_tag="JN078_000840"
     CDS             complement(5801..6397)
                     /gene="slmA"
                     /locus_tag="JN078_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000818604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion factor SlmA"
                     /protein_id="HAY9040127.1"
                     /translation="MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVS
                     EAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFGERN
                     PGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEGYTTDETLLAS
                     QILAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAAQLQ"
     gene            complement(6504..6962)
                     /gene="dut"
                     /locus_tag="JN078_000841"
     CDS             complement(6504..6962)
                     /gene="dut"
                     /locus_tag="JN078_000841"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000976070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HAY9040128.1"
                     /translation="MMKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLDDAVELA
                     PGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVW
                     NRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ"
     gene            complement(6940..8160)
                     /gene="coaBC"
                     /locus_tag="JN078_000842"
     CDS             complement(6940..8160)
                     /gene="coaBC"
                     /locus_tag="JN078_000842"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HAY9040129.1"
                     /translation="MSLAGKKIVLGVSGGIAAYKTPELVRRLRDRGADVRVAMTEAAK
                     AFITPLSLQAVSGYPVSDSLLDPAAEAAMGHIELGKWADLVILAPATADLIARVAAGM
                     ANDLVSTICLATPAPVAVLPAMNQQMYRAAATQHNLEGLASRGLLIWGPDSGSQACGD
                     IGPGRMLDPLTIVDMAVAHFSPVNDLKHLNIMITAGPTREPLDPVRYISNHSSGKMGF
                     AIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAA
                     VADYRAATVAPEKIKKQATQGDELTIKMVKNPDIVAGVAALKDHRPYVVGFAAETNNV
                     EEYARQKRIRKNLDLICANDVSQPTQGFNSENNALHLFWQDGDKVLPLERKELLGQLL
                     LDEIVTRYDEKNRR"
     gene            8332..9000
                     /locus_tag="JN078_000843"
     CDS             8332..9000
                     /locus_tag="JN078_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="JAB domain-containing protein"
                     /protein_id="HAY9040130.1"
                     /translation="MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTL
                     AKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQLKGIAELARRYYNVRMREESPLL
                     SPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
                     KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAE
                     RGWI"
     gene            9217..9453
                     /gene="rpmB"
                     /locus_tag="JN078_000844"
     CDS             9217..9453
                     /gene="rpmB"
                     /locus_tag="JN078_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008457442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HAY9040131.1"
                     /translation="MSRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEK
                     RFVTLRVSAKGMRVIDKKGIDTVLAELRARSEKY"
     gene            9474..9641
                     /gene="rpmG"
                     /locus_tag="JN078_000845"
     CDS             9474..9641
                     /gene="rpmG"
                     /locus_tag="JN078_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HAY9040132.1"
                     /translation="MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVR
                     QHVIYKEAKIK"
     gene            9739..10548
                     /gene="mutM"
                     /locus_tag="JN078_000846"
     CDS             9739..10548
                     /gene="mutM"
                     /locus_tag="JN078_000846"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HAY9040133.1"
                     /translation="MPELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEIYRL
                     SDQPVLSVQRRAKYLLLELPEGWIIIHLGMSGSLRILPEELPPEKHDHVDLVMSNGKV
                     LRYTDPRRFGAWLWTKELEGHNVLAHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMD
                     NKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLK
                     DFLQSDGKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQCQK"
     gene            complement(10587..11066)
                     /gene="coaD"
                     /locus_tag="JN078_000847"
     CDS             complement(10587..11066)
                     /gene="coaD"
                     /locus_tag="JN078_000847"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HAY9040134.1"
                     /translation="MQKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKP
                     MFTLEERVALAQQATAHLGNVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQL
                     AHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAKLA"
     gene            complement(11074..12351)
                     /gene="waaA"
                     /locus_tag="JN078_000848"
     CDS             complement(11074..12351)
                     /gene="waaA"
                     /locus_tag="JN078_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HAY9040135.1"
                     /translation="MLELLYTALLYLIQPLIWIRLWVRGRKAPAYRKRWGERYGFYRH
                     PLKPGGIMLHSVSVGETLAAIPLVRALRHRYPDLPITVTTMTPTGSERVQSAFGKDVQ
                     HVYLPYDLPDALNRFLNKVDPKLVLIMETELWPNLIAALHKRKIPLVIANARLSARSA
                     AGYAKLGKFVRRLLRRITLIAAQNEEDGARFVALGAKNNQVTVTGSLKFDISVTPQLA
                     AKAVTLRRQWAPHRPVWIATSTHEGEESVVIAAHQVLLQQFPNLLLILVPRHPERFPD
                     AINLVRQAGLSYITRSSGEVPSTSTQVVVGDTMGELMLLYGIADLAFVGGSLVERGGH
                     NPLEAAAHAIPVLMGPHTFNFKDICARLEQASGLITVTDATTLAKEVSSLLTDADYRS
                     FYGRHAVEVLYQNQGALQRLLQLLEPYLPPKTH"
     gene            12764..13822
                     /gene="rfaQ"
                     /locus_tag="JN078_000849"
     CDS             12764..13822
                     /gene="rfaQ"
                     /locus_tag="JN078_000849"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptosyltransferase
                     RfaQ"
                     /protein_id="HAY9040136.1"
                     /translation="MDKLFRRILLIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQ
                     DTIPILSENPEINALYGIKNKKAKASEKIANFFHLIKVLRANKYDLIVNLTDQWMVAI
                     LVRLLNARVKISQDYHHRQSAFWRKSFTHLVPLQGGNVVESNLSVLTPLRVDSLVKQT
                     TMSYPPASWKRMRRELDHAGVGQNYVVIQPTARQIFKCWDNAKFSAVIDALHARGYEV
                     VLTSGPDKDDLACVNEIAQGCQTPPVTALAGKVTFPELGALIDHAQLFIGVDSAPAHI
                     AAAVNTPLISLFGATDHIFWRPWSNNMIQFWAGDYREMPTRDQRDRNEMYLSVIPAAD
                     VIAAVDKLLPSSTTGTSL"
     gene            13819..14943
                     /locus_tag="JN078_000850"
     CDS             13819..14943
                     /locus_tag="JN078_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HAY9040137.1"
                     /translation="MIVAFCLYKYFPFGGLQRDFMRIAQTVAARGHHVRVYTQSWEGE
                     YPDVFELIKVPVKSHTNHGRNAEYFAWVQKHLREHPVDKVVGFNKMPGLDVYYAADVC
                     YAEKVAQEKGFFYHLTSRYRHYAAFERATFEQGKPTQLLMLTDKQIADFQKHYQTEAE
                     RFHILPPGIYPDRKYSQQPANSREIFRKKNGITEQQYLLLQVGSDFTRKGVDRSIEAL
                     ASLPDSLRHNTLLYVVGQDKPRKFEALAEKRGVRSNVHFFSGRNDVSELMAAADLLLH
                     PAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIVDANCGEAIAEPFRQETLNEILRKA
                     LTQSSLRQAWAENARHYADTQDLYSLPEKAADIITGGLDG"
     gene            14936..15733
                     /gene="rfaP"
                     /locus_tag="JN078_000851"
     CDS             14936..15733
                     /gene="rfaP"
                     /locus_tag="JN078_000851"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312532.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptose(I) kinase RfaP"
                     /protein_id="HAY9040138.1"
                     /translation="MVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAG
                     KSYFLKWHRGTTLKEIIKNLLSLRMPVLGADREWSAIHRLRDVGVDTMYGVAFGEKGI
                     NPLSRTSFIITEDLTPTISLEDYCADWATNPPDVRVKRMLIKRVATMVRDMHAAGINH
                     RDCYICHFLLHLPFSGKEEELKISVIDLHRAQLRTRVPRRWRDKDLIGLYFSSMNIGL
                     TQRDIWRFMKVYFAAPLKDILKQEQGLLSQAEAKATKIRERTIRKSL"
     gene            15749..16765
                     /gene="waaO"
                     /locus_tag="JN078_000852"
                     /gene_synonym="rfaI"
     CDS             15749..16765
                     /gene="waaO"
                     /locus_tag="JN078_000852"
                     /gene_synonym="rfaI"
                     /EC_number="2.4.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001540083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     3-alpha-galactosyltransferase"
                     /protein_id="HAY9040139.1"
                     /translation="MSAHYFNPQEMINKTIIFDERPAASVASSFHVAYGIDKNFLFGC
                     GVSITSVLLHNNDVSFVFHVFIDDIPEADIQRLAQLAKSYRTCIQIHLVNCERLKALP
                     TTKNWSIAMYFRFVIADYFIDQQDKILYLDADIACQGNLKPLITMDLANNVAAVVTER
                     DANWWSLRGQSLQCNELEKGYFNSGVLLINTLAWAQESVSAKAMSMLADKAIVSRFTY
                     MDQDILNLILLGKVKFIDAKYNTQFSLNYELKKSFVCPINDETVLIHYVGPTKPWHYW
                     AGYPSAQPFIKAKEASPWKNEPLMRPVNSNYARYCAKHNFKQNKPINGIMNYIYYFYL
                     KIIK"
     gene            16782..17777
                     /locus_tag="JN078_000853"
     CDS             16782..17777
                     /locus_tag="JN078_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001001722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide 1,2-glucosyltransferase"
                     /protein_id="HAY9040140.1"
                     /translation="MNEFIKERFSYLADNKKENAPELNVSYGIDKNFLYGAGVSISSV
                     LINNSDINFVFHVFTDYVDDDYLKSFNETAKQFNTSIIVYLIDPKYFADLPTSQFWSY
                     ATYFRVLSFEYLSESISTLLYLDADVVCKGSLKPLTEIIFKDEFAAVIPDNDSTQAAC
                     AKRLNIPEMNGRYFNAGVIYVNLKKWHEANLTPYLLKLLRGETKYGSLKYLDQDALNI
                     AFNMNNIYLAKDFDTIYTLKNELYDRSHRKYQQTITDKTVLIHYTGITKPWHSWAGYP
                     SASYFNIAREQSPWKKYPLKEARTVAEMQKQYKHLFAHGEYIKGITSLIKYKLKK"
     gene            17787..18479
                     /gene="rfaY"
                     /locus_tag="JN078_000854"
     CDS             17787..18479
                     /gene="rfaY"
                     /locus_tag="JN078_000854"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000633080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptose(II) kinase RfaY"
                     /protein_id="HAY9040141.1"
                     /translation="MITSIRYRGFSFYYKDNDNKYKEIFDEILAYNFKTVKVLCNIDD
                     TKVSLIDTKYGRYVFKVFAPKTKRNERFLKSFVKGDYYQNLIVETDRVRSAGLTFPND
                     FYFLAERKIFNYASVFIMLIEYVEGVELNDMPIIPENVKAEIKASMEKLHALNMLSGD
                     PHRGNFIVSKDGVRIIDLSGKSCTAERKARDRLAMERHLGIANEIKDYGYYSVIYRTK
                     LRKFIKKLKGKA"
     gene            18505..19530
                     /locus_tag="JN078_000855"
     CDS             18505..19530
                     /locus_tag="JN078_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000364797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactose--(galactosyl) LPS
                     alpha1,2-galactosyltransferase"
                     /protein_id="HAY9040142.1"
                     /translation="MDLLAESITEVAVSGEIANTDRVLNIAYGIDRNFLFGAAVSMQS
                     VVMHNPDLAVKFHLFTDYIDEDYLQRVNAFTSKNANVEVIIYKVSNAFIDIFPSLKQW
                     SYATFFRLVAFQYLSETIENLLYIDADVICKGSLAGLLDINFDEDKFAAVIKDVPFMQ
                     EKPAKRLAIEGLPGNYFNAGVVYLQLEAWAKNDFMNKAIAMLASDPQHTKYKCLDQDI
                     LNILFFGHCNFISGDYDCFYGIDYELKNKSDEDYKKTITDDTKLIHYVGVTKPWNDWT
                     NYPCQKYFNEAYQASCWNDVAFIPATNEKQYQVKYQHAKKNGDTFNAFIYFIKFKLNK
                     YKRKLFG"
     gene            19615..20598
                     /locus_tag="JN078_000856"
     CDS             19615..20598
                     /locus_tag="JN078_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016246416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HAY9040143.1"
                     /translation="MSNDYPLVSIIIPTYNSSDYITETLTKLEKQTYPNFEIVIVNDG
                     SKDNTSNVLREYGLTHSRLIIVNKENGGVSSARNTGIRKAQGQFICFMDDDDEIDPNY
                     LLKMYTRQHETGGDAIYCGLYGHYIKDGVTYSPINTEFNEGSLLFDFFYKKVRFHIGC
                     LFIRKQLLEENNLFFDEDLRLGEDLDFIYRLLITCDMYAVPYYMYKHNYRENSLMNSC
                     RTITHYRHESFAHERIYSSVMQLYKGNRKEEIHTLLSQNRAYHKTRYLWNVLLNGDFK
                     LLNQLVESNEKELRYCNLPGKRDKRRAKILASKNYILWRMVRLVNRKKNKR"
     gene            20644..21897
                     /locus_tag="JN078_000857"
     CDS             20644..21897
                     /locus_tag="JN078_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012602581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HAY9040144.1"
                     /translation="MSFCWNEINSGIKSLILILCIFSLMTLSLWDDVATKFLHAAGII
                     SALYFLATPKKTITNNPTLLIFISLCLLGIVNIIWYSHYKVSGSVYTNAYRGPMETGK
                     IALCSAFIFLVLFAKNEMRTKIKFGKLILFASLATQLLFFAHAMWQHFYLNVDRVALS
                     ASHATTAGYIILFPSLLASILILKSDFRHKTTLYTINFMLSLCAVIVTETRAAILVFP
                     FFALILIVMDSYINKRINYKLYCFIAIALLAGVFSFKDTLLMRMNDLNNDLVNYSHDN
                     TRTSVGARLAMYEVGLKTYSPIGQSLEKRAEKIHELEEKEPRLSGALPFVDSHLHNDL
                     IDTLSTRGIPGVVLTILAFSAILIYALRTAKEPYILILLFSLLVVGLSDVILFSKPVP
                     TAVFVTIILLCAYFKAQSDQYLLDK"
     gene            complement(21967..22947)
                     /gene="rfaC"
                     /locus_tag="JN078_000858"
     CDS             complement(21967..22947)
                     /gene="rfaC"
                     /locus_tag="JN078_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase RfaC"
                     /protein_id="HAY9040145.1"
                     /translation="MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQI
                     PSWHAAVERVIPVAIRRWRKAWFSAPIKAERKAFREALQAENYDAVIDAQGLVKSAAL
                     VTRLAHGVKHGLDWQTAREPLASLFYNCKHHIAKQQHAVERTRELFAKSLGYSKPQTQ
                     GDYAIAQHFLTNLPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWG
                     APHEEERAKRLAEGFDYVEVLPKMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNI
                     TVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKRFIEENAENAAMI"
     gene            complement(22951..23997)
                     /gene="rfaF"
                     /locus_tag="JN078_000859"
     CDS             complement(22951..23997)
                     /gene="rfaF"
                     /locus_tag="JN078_000859"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-heptose--LPS heptosyltransferase RfaF"
                     /protein_id="HAY9040146.1"
                     /translation="MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPL
                     LSRMPEVNEAIPMPLGHGALEIGERRKLGHSLREKRYDRAYVLPNSFKSALVPFFAGI
                     PHRTGWRGEMRYGLLNDVRVLDKEAWPLMVERYVALAYDKGIMRTAQDLPQPLLWPQL
                     QVSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVL
                     FGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDSGLMHVA
                     AALNRPLVALYGPSSPDFTPPLSHKARVIRLITGYHKVRKGDAAEGYHQSLIDITPQR
                     VLEELNTLLLQEEA"
     gene            complement(24007..24939)
                     /gene="rfaD"
                     /locus_tag="JN078_000860"
     CDS             complement(24007..24939)
                     /gene="rfaD"
                     /locus_tag="JN078_000860"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HAY9040147.1"
                     /translation="MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD
                     LDIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLH
                     YCLEREIPFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANS
                     QIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVA
                     DVNLWFLENGVSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFT
                     QADLTNLRAAGYDKPFKTVAEGVTEYMAWLNRDA"
     gene            25153..26349
                     /gene="kbl"
                     /locus_tag="JN078_000861"
     CDS             25153..26349
                     /gene="kbl"
                     /locus_tag="JN078_000861"
                     /EC_number="2.3.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020239151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine C-acetyltransferase"
                     /protein_id="HAY9040148.1"
                     /translation="MRGEFYQQLTNDLETARAEGLFKEERIITSAQQADITVADGSHV
                     INFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGM
                     EDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQE
                     LEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFV
                     GENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNS
                     LAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTLAGADHAIIPVMLGD
                     AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGK
                     QLGVIA"
     gene            26359..27384
                     /gene="tdh"
                     /locus_tag="JN078_000862"
     CDS             26359..27384
                     /gene="tdh"
                     /locus_tag="JN078_000862"
                     /EC_number="1.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine 3-dehydrogenase"
                     /protein_id="HAY9040149.1"
                     /translation="MKALSKLKAEEGIWMTDVPVPELGHNDLLIKIRKTAICGTDVHI
                     YNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGG
                     RTHLCRNTIGVGVNRPGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSF
                     DLVGEDVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKE
                     NLNDVMAELGMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKV
                     IFKGLFIKGIYGREMFETWYKMAALIQSGLDLSPIITHRFSIDDFQKGFDAMRSGQSG
                     KVILSWD"
     gene            27623..28657
                     /gene="waaH"
                     /locus_tag="JN078_000863"
                     /pseudo
     CDS             27623..28657
                     /gene="waaH"
                     /locus_tag="JN078_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418072.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucuronate:LPS(HepIII) glycosyltransferase"
     gene            complement(28644..29603)
                     /locus_tag="JN078_000864"
     CDS             complement(28644..29603)
                     /locus_tag="JN078_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312519.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HAY9040150.1"
                     /translation="MFPFRRNVLAFAALLALSSPVLAGKLAIVIDDFGYRPHNENQVL
                     AMPSAISVAVLPDSPHAREMATKAHNSGHEVLIHLPMAPLSKQPLEKNTLRPEMSSDE
                     IERIIRSAVNNVPYAVGINNHMGSKMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQA
                     MRAAQGTGVKVIKRKVFLDDSQNEADIRVQFNRAIDLARRNGSTIAIGHPHPLTVRVL
                     QQMVYNLPPDITLVKASSLLNEPQVDTSTPPKNAVPDAPRNPFRGVKLCKPKKPIEPV
                     YANRFFEVLSESISQSTLIVYFQHQWQGWGKQPEAAKFNASAN"
     gene            complement(29607..30890)
                     /gene="envC"
                     /locus_tag="JN078_000865"
     CDS             complement(29607..30890)
                     /gene="envC"
                     /locus_tag="JN078_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein hydrolase activator EnvC"
                     /protein_id="HAY9040151.1"
                     /translation="MRGKAINTMTRAVKPRRFAIRPIIYASVLSAGVLLCAFSAHADE
                     RDQLKSIQADIAAKERAVRQKQQQRASLLAQLKKQEEAISEATRKLRETQNTLNQLNK
                     QIDEMNASIAKLEQQKAAQERSLAAQLDAAFRQGEHTGIQLILSGEESQCGQRLQAYF
                     GYLNQARQETIAQLKQTREEVAMQRAELEEKQSEQQTLLYEQRAQQAKLTQALNERKK
                     TLAGLESSIQQGQQQLSELRANESRLRNSIARAEAAAKARAEREAREAQAVRDRQKEA
                     TRKGTTYKPTESEKSLMSRTGGLGAPRGQAFWPVRGPTLHRYGEQLQGELRWKGMVIG
                     ASEGTEVKAIADGRVILADWLQGYGLVVVVEHGKGDMSLYGYNQSALVSVGSQVRAGQ
                     PIALVGSSGGQGRPSLYFEIRRQGQAVNPQPWLGR"
     gene            complement(30900..32444)
                     /gene="gpmM"
                     /locus_tag="JN078_000866"
                     /gene_synonym="pgmI"
     CDS             complement(30900..32444)
                     /gene="gpmM"
                     /locus_tag="JN078_000866"
                     /gene_synonym="pgmI"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HAY9040152.1"
                     /translation="MSVSKKPMVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPH
                     TLIDASGLEVGLPDRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGA
                     VDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPR
                     SAESSLKKFEEKFAALGKGRVASIIGRYYAMDRDNRWDRVEKAYDLLTLAQGEFQADT
                     AVAGLQAAYARDENDEFVKATVIRAEGQPDAAMEDGDALIFMNFRADRAREITRAFVN
                     ADFDGFARKKVVNVDFVMLTEYAADIKTAVAYPPASLVNTFGEWMAKNDKTQLRISET
                     EKYAHVTFFFNGGVEESFKGEDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKY
                     DTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQ
                     MRNPATGQAHTAHTNLPVPLIYVGDKNVKAVAGGKLSDIAPTMLSLMGMEIPQEMTGK
                     PLFIVE"
     gene            32689..33120
                     /locus_tag="JN078_000867"
     CDS             32689..33120
                     /locus_tag="JN078_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HAY9040153.1"
                     /translation="MQEIMQFVGRHPILSIAWIALLVAVLVTTFKSLTSKVKVITRGE
                     ATRLINKEDAVVVDLRQRDDFRKGHIAGSINLLPSEIKANNVGELEKHKDKPVIVVDG
                     SGMQCQEPANALTKAGFAQVFVLKEGVAGWAGENLPLVRGK"
     gene            33262..33513
                     /gene="grxC"
                     /locus_tag="JN078_000868"
     CDS             33262..33513
                     /gene="grxC"
                     /locus_tag="JN078_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 3"
                     /protein_id="HAY9040154.1"
                     /translation="MANVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEM
                     IKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLK"
     gene            33576..34043
                     /gene="secB"
                     /locus_tag="JN078_000869"
     CDS             33576..34043
                     /gene="secB"
                     /locus_tag="JN078_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HAY9040155.1"
                     /translation="MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVFQKDWQPEVKLDL
                     DTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYC
                     PNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTEEHQDA"
     gene            34043..35062
                     /gene="gpsA"
                     /locus_tag="JN078_000870"
     CDS             34043..35062
                     /gene="gpsA"
                     /locus_tag="JN078_000870"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HAY9040156.1"
                     /translation="MNQRNASMTVIGAGSYGTALAITLARNGHEVVLWGHDPEHIATL
                     ERDRCNAAFLPDVPFPDTLHLESDLATALAASRNILVVVPSHVFGEVLRQIKPLMRPD
                     ARLVWATKGLEAETGRLLQDVAREALGDQIPLAVISGPTFAKELAAGLPTAISLASTD
                     QTFADDLQQLLHCGKSFRVYSNPDFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTAL
                     ITRGLAEMSRLGAALGAEPATFMGMAGLGDLVLTCTDNQSRNRRFGMMLGQGMDVQSA
                     QEKIGQVVEGYRNTKEVRELAHRFGVEMPITEEIYQVLYCGKNAREAALTLLGRARKD
                     ERSSH"
     gene            35142..35963
                     /gene="cysE"
                     /locus_tag="JN078_000871"
     CDS             35142..35963
                     /gene="cysE"
                     /locus_tag="JN078_000871"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001112113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HAY9040157.1"
                     /translation="MSCEELEIVWNNIKAEARTLADCEPMLASFYHATLLKHENLGSA
                     LSYMLANKLSSPIMPAIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPL
                     LYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHAT
                     GIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGA
                     KIGAGSVVLQPVPPHTTAAGVPARIVGKPDSDKPSMDMDQHFNGINHTFEYGDGI"
     gene            complement(36016..36489)
                     /gene="trmL"
                     /locus_tag="JN078_000872"
     CDS             complement(36016..36489)
                     /gene="trmL"
                     /locus_tag="JN078_000872"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HAY9040158.1"
                     /translation="MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRL
                     RRAGLDYHEFTAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPE
                     TRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQLGYPGALLRD"
BASE COUNT         9111 a         8695 c         9111 g         9704 t
ORIGIN      
        1 cggcctttaa tccagttagt aaagtcgcgg cccaccccca gcgctttatg caacgcctta
       61 gcgctcacaa tattggcttc acgcccgcca atgcgtccgg caataacggg aacaatagcg
      121 gcaaagtcgt tgccgttaat tactcccgtg ttaacgttgg gttgcggggc ggcccccgaa
      181 ctgaatcggc ttttttcgat agtcatattt tcggctccgt tatgcggcgg tgagattgtc
      241 cgggtataga ttgagaatgt cggcaatttc aggctgagaa agtccctgat agccgccagc
      301 gtcggcgtta tggttcacaa gccgaataac ttttagaacg tcaccgcgcc cggtaaagcg
      361 atagcgtaaa tgtgacccta tcccgtcggg gttcttttcg tctatacgct caagctgaat
      421 atcaagcctg cgctctaact cgctggcgta gttccttcca gacgaaaggc ggcaataacg
      481 cagaatgtca ttttctgtcc atccctctat accagtacgc agcatataga ctctggcacg
      541 atgctttttc ggtgtgcgct ttggtgcttg aagggatttt gtaaggggcg taacatcaga
      601 tacgcgaata tctgaattag ccgcctgtaa tgggcggttt ttcttttcca tcaggccacc
      661 ttcccgcggc gttctgccag ccagttgtga atctcaaccg catcaaacgc agttattttt
      721 tctcccagct ttaccggacg tggtagtgaa ccgtttctta ctttacggtc gatggtggat
      781 acactaacgc ccagcaattc agccaggcgg aagcgtctga tatagccttt tgtagggata
      841 gtgtcgatgt tcatgattcc cgtaacctct tagcgatagt tgttgcttcg ttacgggtat
      901 ttaatggcgt gcacgctcaa aaaggaatga tcgtattttt tactatcgtg atagtaaaat
      961 ttactatcac ctttttttcc ctgccgtggt gcgttcttcc ggtgttctgt ctgcgtcggc
     1021 tatgagtttc ttcaggtaat ctatggatgg ctcatcatag ccgcccccca aaagcgccca
     1081 gtggtttatt gtggcgttcg cccatgcttc gttggtttcc ttcccgttct tccctttaca
     1141 ctcttctggg tagtgccgct tcacataaat caacgccaag aggcaaattt cgcgcttttg
     1201 cctgtggcgc tctctgtttc cgtgctcaac gtttttaaca tcctcataaa gagcttgtaa
     1261 gtttatgcga gtttcggggc tgtatatggg ctggtttttg tccatgcatt cgccgatata
     1321 ttcaacccac ggccttgtta tgtacaaatc ctctacggat atttcgtgga aggcatgttt
     1381 tgtataatcg agaaaaaaat aataattcgc acttacgtct agttctcttt ttctgtgtgc
     1441 ggggctgaat atgcgtgcgg gagtgtcaat agaatcaagc cctgcgatgt cgagtatata
     1501 ggaggcgtta acatgccaac atggcaatct atatgattta caacgcctgc cttaaagctt
     1561 ttttcgtcct ctacttcagt gattatgtcg gcaagtaata agcagtcttc tttgacgtct
     1621 gggaataaag agcaattgcg gtaaagactc gcgatgctat gtaatgtgcc gtcgtagccg
     1681 caaaggtacg cgctcaaata tatagattct gccgccgcca taatcaaaag atcatcaata
     1741 tctatttcta ataattcggc tgctctgtta agcctgaaaa aaggggcggg tggtaatttt
     1801 ttcattgtgt caccttttac gctgcgcctt attttgtgat tgagccaggc ggtaaggctt
     1861 cccgcttttc gccccgtcga gctaggctca atctattcag ttagttcgcc cttctgagag
     1921 gcgttacgtt gtagtctttt ccgctttcca gtgccaccag cagatcagcc cactgtgcca
     1981 gtgctgcttt acgctcatca aaatactgat ggcggttata aatcccctct acgcccttaa
     2041 tgcgatgatt gaggcatcgt tccgccacaa caggatcaac acccaacgct gctaaatgag
     2101 tacgtgcggt gcgtcgaaag tcgtgaatcg tgaaattagg cacatccggc atttcggcgc
     2161 gaaccttagc cagtgctacg ggtaaagtgc tttcctgaat atgtgggatc attctgtttt
     2221 gcatcttcct ggccggaagc acccatgcgc tattacatga aaaggtgtgt agctctctca
     2281 accattcaac ggctggggaa ggtagaggta tatcaatagg gtctccgttt ttgctgcgtt
     2341 cttccggcaa atgccatacc gcaccatcta aatcaaactc ttcccatcgt gcggcgcata
     2401 attccatttt gcggacgcat aacgctaaca gtaatttgaa cgtgatttcg ttctggcgac
     2461 tgaatccctt agccgtgcgc atggctttga atagctggat taactcatcg cgggttaacc
     2521 agcggtcacg ggcagcttct ttccctccgg cgtctgccac ctcaaaggct gaacaggggt
     2581 taatctctag cgcgtgccgt ttgattccgt agtcgaatat gcggcgcgtc catctcagca
     2641 cgtccgttgc tatggtcggc gctccacggt caacaatacc tttcagcatg tcatcgatat
     2701 ggcgcggttt cacgtcctct accttcatgc tgccaatgca ggggtttata tctttgtcga
     2761 tacggcggcg gagtatatcg gggtgcttcc agcgcgggag gatctgacgc tcaaagtatt
     2821 cagcggcaag ctctgaaacg cgcatagcgt tcttctctgc ttccatcttc gccagtgctt
     2881 cggttttgcg cttctgcttc tctcctgcaa cgtcatagcc cagcgcaacg cgagccgata
     2941 gctctttggc tgtctctctg gcctttgata gtgatagctc gctatacgaa ccaattagca
     3001 tggcgcggga cttccctgcg agtttatagc ggaatctcca tgtgggggtt ttgtcggctt
     3061 cacggtaacg taggtataaa ccgttaccgt ctgcccgccc ctcgaatcgc tctccgctct
     3121 taatccatgc gcggatctgc atgtctgtta gttttggcat tttgcgaata tccaaacttt
     3181 gaataggggg tgtacccaaa gcaatgtacc caaacctcat tgggtacacc tttgtgtaca
     3241 ccataatcat gcgctttgtt gcgtctttat gatagcccat gataacaaaa aagcccgctg
     3301 ggttgcgggc ttggtgtgat ttatgcgttg tcctaaatgt tgctgatagc ttactcgata
     3361 ttctgaatct gctcgcgcat ctgctcaatc aacactttca gctcaatcgc ggagtttgtc
     3421 acttcggcat tgatagactt cgacgcaaga gtgttcgact cgcggttgaa ttcctgcatc
     3481 ataaagtcca gacgacgacc aacggcttct tttttcttca gaatgttgta ggtctctttg
     3541 acatgcgctt ccaggcggtc cagttcttcg gcaacgtcaa ttcgttgtgc cagcagaacc
     3601 agctcctgct ccagacggtt gttttccaac tgaacctgag catcttccag cttcgcgacc
     3661 agacgctcac gctgccattg caggatttcc ggcatatggg cgcggacttt gaccacttcg
     3721 gcggtgacgc cttccagacg ctgctcgatc aatgctttca gtgcctgacc ttcggtttcg
     3781 cgcgcgacaa taaagtcgtc cagcgtacca tccagcgccg cgagaatttc agcggcaatg
     3841 gcgtcaagat cctgctcctg ggctgccatc acgcccggcc agcgtagaat atcaaccggg
     3901 ttgatttccc cttcgtcact ctgcattttt acccagttcg cggcagttac cagctgttta
     3961 gccagttttt cgttgaggat cagctcacct tgcgcgctaa tatctggctc atagcgcagg
     4021 gtacattcca ctttaccgcg cgtcaggcga gaacgaatac gctcgcgaac gacaggttca
     4081 aggctacgga actgctccgg cagacgaaag taagtttcca gataacgctg gtttaccgag
     4141 cgcatttccc aggttgcgct cccccattca cccttgattt cacgccgggc gtaggcggtc
     4201 atactgcgga tcatagacgt tcctgtttat aaaaggagag gtggaaggat tatagccatc
     4261 gatgccttgt caggatagga ataaccgccg gaagtccgta taatgcgcag ccacatttgt
     4321 ttcaagccgg agatttcaat atgcgtccag caggccgtag caataatcag gtgcgtcccg
     4381 ttaccctgac tcgtaactat acaaaacatg cagaaggctc ggtgctggtc gaatttggcg
     4441 ataccaaagt gttgtgtacc gcctctattg aagaaggcgt gccgcgcttc ctgaaaggtc
     4501 agggccaggg ctggatcacc gcagagtacg gcatgctgcc acgttctacc cacacccgta
     4561 acgctcgtga agcggcgaaa ggtaagcagg gtggacgcac aatggaaatc cagcgtctga
     4621 tcgcccgtgc tcttcgcgcg gcagtagatt tgaaagcgct gggtgagttc accattacgc
     4681 tggactgcga cgtgcttcag gctgatggtg gcacgcgtac cgcgtcgatt acgggtgcct
     4741 gcgtggcgct ggcagatgcg ctacagaagc tggtggaaaa cggcaagctg aaaaccaacc
     4801 cgatgaaagg gatggtagcc gcagtttctg tcggaattgt gaacggcgaa gcggtttgcg
     4861 atctggaata cgttgaagac tctgccgcag agaccgacat gaacgtagtg atgaccgaag
     4921 acgggcgcat cattgaagtg caggggacgg cagaaggcga gccgttcacc catgaagagc
     4981 tactcacctt gttggctctg gcccgagggg gaatcgaatc cattgtagcg acgcagaagg
     5041 cggcgctggc aaactgattt ttaaggcgac tgatgagtcg cctttttttt gtctgtagaa
     5101 aagtaagatg aggagcgaag gcatgaaacc atatcagcgc cagtttattg aatttgcgct
     5161 tggcaagcag gtgttaaagt ttggcgagtt tacgttgaag tccgggcgca aaagccccta
     5221 tttcttcaac gccgggctgt ttaataccgg gcgcgatctg gcactgttag gccgttttta
     5281 cgctgaagcg ttggtggatt ccggccttga gttcgatctg ctgtttggcc ctgcttacaa
     5341 agggatcccg attgccacca ctaccgccgt ggcgctggcg gagcatcatg accttgacct
     5401 gccgtactgc tttaaccgca aagaggcaaa agaccacggt gaaggcggca atctggttgg
     5461 tagcgcgtta caaggacgcg taatgctggt agatgatgtg atcaccgccg gaacggcgat
     5521 tcgcgaatcg atggagatta ttcaggctaa tggcgcgacg cttgctggcg tgttgatttc
     5581 gcttgatcgt caggaacggg ggcgcggcga gatttcggcg attcaggaag ttgagcgtga
     5641 ttacaactgc aaagtgatct ctatcatcac cctgaaagac ctgattgctt acctggaaga
     5701 gaagccggaa atggcggaac atctggcggc ggttaaggcc tatcgcgaag agtttggcgt
     5761 ttaaagaaac tcgccggatg aaaagtcatc cggcgtcata ttactgcaac tgtgccgcaa
     5821 ttagcggcca gcgggcgtca aaatcatccg tcgggcggta tttaaattcg ctgcggacaa
     5881 aacgtgacag cataccttca cagaaggcca ggatctggct tgccagcagg gtttcatcgg
     5941 tggtgtaacc ttcaccctca cgcattctct tttcacgcaa tacctgacgc agctgcgctt
     6001 caatacgctc gaacagctgg ttgatgcgcc cttgcaggcg atcctgttca aacattagcg
     6061 catgaccagt gaggatgcgg gtcaggccag gattacgctc accaaaaccg agaagcagca
     6121 acacaatcag acgcaggcgc gctgtggtgt ctttctcatc tttcagaatc aggttgatgc
     6181 gagtaatcag gctatcttcg ataaactcaa tcaggctatc gaacatgcgg gtcttactgg
     6241 ggaagtggcg atacagtgcc gcttcggaaa cgccgacaga ggcggccagt tttgccgtcg
     6301 tgatacgttg gcttccatcg ctggattcca gcatcagcgc cagagactga agtatttcct
     6361 cgcgacggtt ccttttcgca gtttgttttt ctgccatgtt acaaaatacc cctgaaaata
     6421 agcacttgcc aggcggcacc cacgctatga ccgcaaacga aatgtttgcg gctatgttat
     6481 gacgttattc ggatgcgtat gtgttactga cgaccagagt gaccaaagcc gccttcaccg
     6541 cggtcggtgg cgtcgaaatc ttccaccaga ttaaattcag cctgtactac cggaacaaaa
     6601 atcatctggg cgatgcgttc gccaggttga atggtaaagc tgtcctgacc acggttccac
     6661 acggaaatca tcaactggcc ctgatagtcg gaatcgatca atcctaccag gttaccaagc
     6721 acgataccgt gcttatgtcc caatccggag cgcggcagca tcattgccgc cagtgaagga
     6781 tcggcaatat gaatcgccag cccggtcgga accagcgtag tgtcacccgg agccagttct
     6841 acggcgtcgt cgagacaggc acgcaggtca agtccggcag agccagaggt ggcataagtc
     6901 gggagcggaa attccttccc aacgcgcggg tccagaatct taacgtcgat ttttttcatc
     6961 ataacgggtc acgatctcgt cgagtaatag ttggccaagg agctctttgc gctcaagcgg
     7021 taagacttta tctccgtcct gccagaaaag gtgtaatgcg ttgttttcgc tgttaaatcc
     7081 ttgagttggc tgggaaacat cgttcgcgca gatcagatca aggtttttac ggatacgttt
     7141 ttgccgggcg tattcttcca cattatttgt ttcggcggca aatccaacga cgtagggtcg
     7201 atggtctttt agtgcggcaa cgcctgcgac gatatcgggg tttttaacca tttttattgt
     7261 taattcatca ccctgcgtgg cctgcttttt gattttttct ggggccacgg tagctgcgcg
     7321 ataatccgcc acggcggcgc agccgataaa aatattttgc tgctgtacag aagcattcac
     7381 ggcggcttcc atttccagcg cggtcatcac atcaacacgt ttaacaaacg gtggcgtcgg
     7441 tagtgaaacc ggacctgata ccagcgtgac gttcgcgcca cgacgggcag cggcggcggc
     7501 gatagcaaaa cccatcttgc cggagctgtg attagagata taacgcacgg gatcgagcgg
     7561 ttcacgcgtc ggaccggcgg taatcataat gttcagatgt ttcaggtcgt tgacgggcga
     7621 aaaatgcgcc accgccatat ccacaatggt taacggatcg agcattcgcc caggaccgat
     7681 atcaccacaa gcctgactgc cactgtctgg cccccagatg agcaaaccac gggaagcaag
     7741 cccctctaaa ttatgctgcg tggcagcggc acggtacatc tgctggttca tggcggggag
     7801 cacggctaca ggcgcaggtg tagccagaca aatcgtcgat accaggtcat tcgccattcc
     7861 ggcagcaaca cgggcaatca aatctgccgt ggcaggggcg agaatcacta aatcagccca
     7921 tttacccagc tcaatatggc ccatagcggc ttcggctgcc gggtccagca aactgtcgga
     7981 aacgggataa ccagaaaccg cctgcaagct aagtggggtg ataaaggctt ttgccgcttc
     8041 ggtcatggct acgcggacgt cggccccgcg atcgcgcaaa cgacgcacca gttcaggggt
     8101 tttataggca gcaataccgc cgctaacgcc gagaacgatt tttttaccgg ccaggctcat
     8161 gatgattttt cctgttgggt gacaccagaa gttggcgatt ttatcacaat acttttgttg
     8221 tcgtgccttc acctgagaat cactttgcga ggcgctttcc aggattgaaa actggccgtc
     8281 gatttaacgg aacggctatg acaggatgcg agcaccacaa aggaggtgaa ggtgaaaaac
     8341 aattcacagc tgttgatgcc gcgcgaaaaa atgctgaagt ttggtattag cgccttaacg
     8401 gatgtcgagc tgctggcgct atttctgcgt accggaacgc gcggtaaaga tgtattaacc
     8461 ctggcaaaag agatgctgga gaatttcggc tctctttatg gcttgttaac ctctgaatat
     8521 gaacaattta gtggcgttca tggaattggc gtggcgaaat ttgcccagtt aaaggggatt
     8581 gctgaactgg cgcggcgtta ctacaacgtg cggatgcgtg aagaaagccc tttactcagc
     8641 ccggagatga cgcgggaatt tttacaaagc cagcttacgg gtgaggagcg ggagatcttt
     8701 atggtgatct ttctcgactc acaacaccgg gttataacgc atagccgtct tttttccggc
     8761 acgctaaacc atgttgaagt ccatcctcgg gaaattatcc gcgaagcgat aaaaataaac
     8821 gcctcggcgc tgatccttgc acataatcac ccttcgggtt gtgctgaacc cagtaaagcg
     8881 gataaactca ttactgaacg gataataaag agttgtcagt tcatggattt acgcgtgctc
     8941 gaccatatcg tgattgggcg tggagagtat gtttcttttg ccgaacgcgg ctggatttaa
     9001 cccgctatgc gcgatccttc gggatctttg tctgttcggg acttgagcac atcgctgagt
     9061 cagcgtatac tacgccacct ttgagaatct cgggtttggc atttgggcct ggcaatcgag
     9121 agttcacata gaactgcgat gactgggctg taaagcctga cgaggcgcca ataccccata
     9181 cgaagctcga gctaatttga tttttggaga atagacatgt cccgagtctg ccaagttact
     9241 ggcaagcgtc cggtgaccgg taacaaccgt tcccacgcac tgaacgcgac taaacgccgt
     9301 ttcctgccga acctgcactc tcaccgtttc tgggttgaga gcgagaagcg ttttgtcacc
     9361 ctgcgcgtat ctgctaaagg tatgcgtgta atcgataaaa aaggcatcga tacagttctg
     9421 gctgaactgc gtgcccgtag cgaaaagtac taagtactta gaggaaataa atcatggcta
     9481 aaggtattcg tgagaaaatc aagctggttt cttctgctgg tactggtcac ttctatacca
     9541 ctacgaagaa caaacgtact aagccggaaa aactggaact gaaaaaattc gatccagttg
     9601 ttcgccagca cgtgatctac aaagaagcga aaatcaaata attctcgctt tgatgtaaca
     9661 aaaaacctcg ctccggcggg gttttttgtt atctgcttgc ccccatattg actgcatctg
     9721 ttcattcctg gagatgctat gcctgaatta cccgaagttg aaaccagccg ccgcggcata
     9781 gaaccgcatc tcgttggtgc aaccattctt catgcagtgg tgcgcaacgg acgcttgcgc
     9841 tggccggttt cagaagagat ctaccgttta agcgaccaac cagtgcttag cgtgcagcgg
     9901 cgggctaaat atctgctgct ggagctgcct gagggctgga ttatcattca tttagggatg
     9961 tctggcagcc tgcgcatcct tccagaagaa cttccccctg aaaagcatga ccatgtggat
    10021 ttggtgatga gcaacggcaa agtgctgcgc tacaccgatc cgcgccgctt tggtgcctgg
    10081 ctgtggacca aagagctgga agggcataat gtgctggccc atcttggacc ggagccgctt
    10141 agcgacgatt tcaatggtga gtatctgcat cagaagtgcg cgaagaaaaa aacggcgatt
    10201 aaaccgtggc tgatggataa caagctggtg gtaggggtag ggaatatcta tgccagcgaa
    10261 tcactgtttg cggcggggat ccatccggat cggctggcgt catcactgtc gctggcagag
    10321 tgtgaattgt tagctcgggt gattaaagcg gtgttgctgc gttcgattga gcagggtggt
    10381 acaacgctga aagattttct gcaaagtgat ggtaaaccgg gctatttcgc tcaggaattg
    10441 caggtttacg ggcgaaaagg tgagccgtgt cgggtgtgcg gtacgccgat tgtggcgact
    10501 aaacatgcgc agcgggcaac gttttattgt cggcagtgcc agaagtaatt catgcgcgcc
    10561 ggatcgcata ccatccggca taaacgctac gctaacttcg ccatcagcgc ctgatggaca
    10621 ttctccggca ggaaatgggt gacatcgccc tgatggcgcg ccacctcttt caccaacgat
    10681 gaagagataa acgaccactc tttcgacggc atcagaaaca cactttccag ttccggcatt
    10741 aagtggcgat tcatatgcgc cagctgcatt tcatattcaa aatccgccac cgcacgcagg
    10801 ccacgaatca gcaccgtagc gtgttgatta cgggcgaagt tcgccatcaa atcactaaac
    10861 ccaactactt ccacgttccc cagatgcgcg gttgcctgct gtgccagcgc cacacgctct
    10921 tccagggtaa acatcggttt tttactgggg ctggcggcaa tcgccagaat aacgtgatcg
    10981 aacatttgcg tggcgcgcgt cacgatatcg atatgaccat tggtaatggg atcgaaagta
    11041 cccggataaa tcgcccgttt ttgcataaca acctcaatgc gttttcggtg gcaggtaagg
    11101 ttccagcagt tgaagcaggc gctgtagcgc gccctggttt tgatacagta cttcaacggc
    11161 atgacggcca tagaaactac ggtaatcggc gtcggtgagt aaagaggaaa cctcttttgc
    11221 aagcgtagtg gcatcggtaa cggtaatcag cccgcttgcc tgctccagcc gcgcgcaaat
    11281 gtctttaaaa ttaaaagtat gcggccccat caataccgga atagcgtgtg cggcagcttc
    11341 cagcggatta tgcccaccac gttcaaccag tgaaccgcca acaaaggcga gatcggcaat
    11401 gccgtacagt aacatcaact cgcccatcgt atcgccaacc acaacctgcg tgctggtgga
    11461 ggggacttcc cctgaagagc gtgtgatata gcttagtcca gcctggcgga caaggttaat
    11521 cgcatccggg aagcgttctg gatgacgggg taccaggatg agcaataaat tcgggaattg
    11581 ctgtaacaat acctgatgtg cggcgatcac cacactctct tcaccttcgt gagtgctggt
    11641 ggcaatccat accgggcggt gtggtgccca ctggcggcgc agcgtcacgg ctttagcagc
    11701 caactgcggc gttacagaaa tatcgaattt caggctaccg gtaacggtta cctggttatt
    11761 ttttgcgccc agcgccacaa aacgtgcacc atcttcttca ttttgggcgg caatcagcgt
    11821 aatacgacgc agcaagcgac ggacgaattt acccagtttg gcataacctg cggccgagcg
    11881 ggcagagagt cgcgcgttcg cgatcaccag cggaatttta cgtttatgta gcgccgcaat
    11941 caggttaggc catagttcgg tttccataat caacaccagt ttagggtcga ctttattcag
    12001 gaaacgatta agtgcatcgg gcaggtcata cggcagataa acgtgctgaa catccttccc
    12061 gaaagccgat tgtacgcgct ccgaaccggt tggcgtcatg gttgtaacgg taatcggtaa
    12121 atcaggataa cgatgacgca gcgcgcgcac caacgggatc gccgccagag tttcaccgac
    12181 ggagacggag tgcagcataa tgccgcctgg ttttagcgga tggcggtaaa aaccgtaacg
    12241 ttcaccccag cgttttcgat aggccggagc cttacgtccg cgcacccaga gccgtatcca
    12301 gatcagcggc tgaataaggt agagaagggc ggtgtaaagc aattcgagca tagtaaatag
    12361 ctgacttatg gatgtgctgg ggattctatg tatttagctg tggctttacc attacttttc
    12421 ccgtttttga cttaaatagc aatttacccg ccaattcttg ctgaacatct atactttttt
    12481 tgtattttta tgcgattcat tgatttctgc tgtacgtgca ggaaggaatc gcagagcaac
    12541 agtgaaagaa tatggttgct aatgatttta tttgattgat ttctttattg aaaatcaaca
    12601 atgtgcttaa aaatcattcg ggtcggattg ccgcgaaaga agtgatacac tagcgcgtca
    12661 atatcagtgc ggtatcagta ttcaggtagc tgttgagcct ggggcggtag cgtgcttttt
    12721 ctgcttcacc ttaatcggat aatctcaaca aaaagagtta cttgtggata agctatttcg
    12781 aagaattttg ctcattaaga tgcgttttca tggggatatg ttattaacta ctcccgtcat
    12841 tagttcgctg aaaaaaaatt accctgacgc aaaaatcgat gtgctgcttt atcaggacac
    12901 catcccgatc ctgtctgaaa atccagagat taacgcgctc tacggcataa aaaataaaaa
    12961 agcaaaagcc tcagaaaaaa ttgccaactt ttttcatctc atcaaggtat tacgtgccaa
    13021 taagtatgac cttatcgtca atctcaccga tcaatggatg gttgctatac tggttcgctt
    13081 attaaatgcc cgtgtgaaaa tttcccagga ttatcatcat cggcagtctg ctttttggcg
    13141 taaaagtttc acccatttgg tgccgttgca gggtggaaat gtggtggaaa gtaacttatc
    13201 cgtgctgacc ccattgcgag ttgattcgtt ggtgaagcag acaaccatga gttacccgcc
    13261 tgcaagctgg aaacgtatgc gtcgcgaact tgatcatgct ggtgttggac aaaattatgt
    13321 ggttatccaa cctacggcgc ggcaaatctt caaatgctgg gacaacgcca agttttccgc
    13381 tgtgattgat gccttacatg ctcgtggtta tgaagttgtt ctgacgtccg gcccagataa
    13441 agacgatctg gcctgcgtca atgaaattgc gcagggatgc cagacgccac cagtaacggc
    13501 gctggctgga aaggtgacct tcccggaact tggtgcgtta atcgatcatg cgcagctgtt
    13561 tattggcgtt gattccgcac cggcgcatat tgccgctgca gttaatacgc cgctgatatc
    13621 gctgtttggt gcgacagacc atattttctg gcgtccctgg tcaaataaca tgattcaatt
    13681 ctgggcggga gattaccggg aaatgccaac gcgcgatcag cgtgaccgaa atgagatgta
    13741 tctttcggtt attccggcgg cagatgtcat tgctgctgtc gataaattac tgccctcctc
    13801 cacgacaggt acgtcgttat gatcgttgct ttttgtttat ataaatattt tccctttggc
    13861 ggtttgcagc gcgattttat gcgtattgct cagacagtcg ccgcccgagg tcatcatgtt
    13921 cgggtttata cccagtcgtg ggaaggcgaa taccctgatg tatttgaact gatcaaagtg
    13981 ccggttaaat cgcataccaa tcacgggcgc aatgcggagt attttgcctg ggtgcaaaaa
    14041 catttacgcg aacatcccgt cgataaagtc gttggattca acaaaatgcc ggggctggac
    14101 gtttattatg ccgctgatgt ttgttatgcc gagaaagtcg cgcaggaaaa aggctttttc
    14161 tatcacctga cgtcacgtta tcgccattat gccgcctttg agcgggcaac cttcgaacag
    14221 ggcaagccga cacagctgct gatgctgaca gataagcaaa tcgccgattt ccagaaacat
    14281 tatcagactg aagcggagcg ttttcatatt ctgccaccgg ggatttatcc tgatcgtaaa
    14341 tatagccagc agccagctaa tagccgtgaa atcttccgta agaagaatgg aataaccgaa
    14401 caacaatatt tattgttgca ggtcggttca gacttcacgc gtaaaggtgt cgatcgttcc
    14461 attgaagcac ttgcttcgtt accggattcg ctgcgccaca acacattgct atatgttgtt
    14521 ggacaggata aaccgcgaaa atttgaggcg ctggcagaaa aacgcggcgt gcgcagtaat
    14581 gttcacttct tctcggggcg caacgatgtc tcggaattaa tggcggcggc ggatttatta
    14641 ctgcatcctg cctaccagga agcagcggga attgtgctac tggaagcgat tactgcagga
    14701 ttaccggtac taacaacagc cgtttgtggc tatgcgcatt atattgtcga cgccaattgc
    14761 ggcgaggcta ttgctgagcc attccgccag gaaacattga atgagatttt acgcaaagcg
    14821 ttaacgcaat cttcattgcg ccaggcctgg gcggaaaatg cgcgacatta tgctgataca
    14881 caagatttat acagtctgcc agagaaagcg gcggatatca taacgggtgg tctggatggt
    14941 tgaacttaaa gagccgtttg ccacgttatg gcgcggtaaa gatccttttg aggaagttaa
    15001 aaccttgcag ggtgaggttt ttcgtgaact ggaaactcgc cgcactctgc gatttgaaat
    15061 ggcgggcaaa agctattttc tcaaatggca tcgcggcacg accctgaaag agataatcaa
    15121 aaatttactc tcattgcgga tgccagtatt aggcgcagac cgcgaatgga gtgcgattca
    15181 tcgactgcgg gatgtcggcg ttgatactat gtatggggtg gcatttggcg aaaaaggtat
    15241 taatccgctg agcagaacct cgtttattat taccgaagat ctgaccccaa ccatcagtct
    15301 ggaagattac tgtgctgact gggcgaccaa cccaccagat gttcgcgtaa agcgtatgct
    15361 tattaagcgt gtcgcgacga tggtgcgcga tatgcatgct gcgggcatta accaccgtga
    15421 ctgttatatc tgtcatttcc tgctgcactt gcctttttcc ggtaaggaag aggagttaaa
    15481 aatttcggta attgacctac accgggcgca gcttcgcacg cgcgttccac gtcgttggcg
    15541 cgataaagat cttatagggc tttatttttc ttcaatgaat attggcctga ctcagcggga
    15601 tatctggcgg tttatgaaag tgtattttgc cgccccgctt aaagacattc tcaagcagga
    15661 acaaggactg ctgtcgcaag cagaagcaaa agccacaaaa atcagggaaa gaacgattcg
    15721 aaaatcgttg taatttccgg agagaaatat gagtgcccac tattttaatc cacaagagat
    15781 gatcaataag acaatcatct tcgatgaaag gccagcggcg tcagtggcat catcattcca
    15841 tgttgcttat ggcattgata aaaactttct ttttggttgt ggtgtttcaa tcacgtcagt
    15901 tttgttacat aacaacgacg tgagttttgt tttccacgtt tttattgatg atatccctga
    15961 agccgatatc cagcgtttag cccaattggc gaaaagctat cgtacctgta tccagatcca
    16021 tctagtaaat tgtgaacggc ttaaggcatt accgacgacc aaaaattggt ctattgccat
    16081 gtatttccgt tttgtaattg cagattactt tattgatcaa caagataaga tcctttacct
    16141 ggatgctgat atcgcctgtc agggaaactt aaagccgctg ataacaatgg atcttgccaa
    16201 taacgttgct gctgttgtta ctgaacgcga tgctaactgg tggtcgttac ggggtcaaag
    16261 tctgcagtgt aatgaacttg aaaagggcta ctttaattca ggtgtcctgt taattaatac
    16321 actagcgtgg gcgcaggagt ccgtttctgc taaagcgatg tcgatgcttg ctgataaagc
    16381 catcgtttcc cgtttcacct atatggatca agatatcctt aatcttatcc tgttagggaa
    16441 agttaaattc attgatgcta aatacaatac gcaatttagt ttaaattatg aattaaaaaa
    16501 atcatttgtt tgtccaatta atgatgaaac cgtattaatt cattatgtcg gcccgacaaa
    16561 accctggcat tactgggccg gttatccaag tgcgcaacct tttatcaaag ccaaagaagc
    16621 atcgccctgg aaaaatgaac cgttaatgcg gccagttaac tcaaactatg ctcgttattg
    16681 cgccaagcat aattttaaac aaaataaacc aattaacggg ataatgaatt atatttatta
    16741 tttttattta aagataataa aatgaaattg agaaaagtta aatgaatgaa tttataaaag
    16801 aacggttttc gtatttagca gataataaaa aagaaaacgc cccagagcta aatgtttcct
    16861 acggtatcga taagaatttt ttgtatggtg ctggcgtttc aatttcttcc gttttgatta
    16921 ataattcaga tattaatttt gtctttcatg ttttcactga ttatgtggat gatgattatt
    16981 taaagtcatt taatgaaaca gcaaaacaat ttaatacctc aattattgta tatttaattg
    17041 accccaaata ctttgctgat ctgccgacgt cacagttttg gtcatacgcg acatacttca
    17101 gggtattgtc ttttgaatat ctgagtgaaa gtatttccac actgctgtat ctggatgccg
    17161 atgttgtttg taaaggaagc ctgaaacctc tcacagaaat tatatttaaa gatgagtttg
    17221 ctgcggtcat tcctgacaat gatagtactc aggcggcatg tgcaaaacgc ctcaacattc
    17281 ccgaaatgaa tggacgttat ttcaatgcag gcgttatcta tgtcaatctt aaaaaatggc
    17341 atgaagcaaa tttgacaccg tatttactca aacttttacg aggggaaact aaatatggct
    17401 ctcttaaata tttagatcag gatgcgttga atatcgcatt taatatgaat aatatctacc
    17461 ttgcgaagga ttttgatact atttataccc tgaaaaacga actttatgat cgtagtcatc
    17521 gaaagtatca gcaaaccatt accgataaaa cagtgttgat tcactataca gggataacta
    17581 aaccatggca tagctgggct ggatatccgt ctgcatcata ctttaatatc gcgcgtgaac
    17641 aatctccctg gaagaaatat cctcttaaag aggcgcggac tgttgcagaa atgcagaaac
    17701 aatataagca tctgtttgcc catggtgagt atataaaagg cataacttca ttaattaagt
    17761 acaagcttaa gaaataaatt actcttatga ttacaagtat acgttatcgc ggcttctcat
    17821 tttattacaa agataatgat aataaatata aagaaatctt tgatgaaata ctggcctata
    17881 attttaaaac agtaaaagta ttatgtaata ttgatgatac caaagtatcg ttgattgata
    17941 cgaaatatgg tcgctatgtt tttaaagtct ttgctccgaa aacgaaaagg aatgaacgtt
    18001 ttttaaaatc ttttgtaaaa ggtgactact atcagaattt gatcgttgaa accgatcgtg
    18061 tcagaagtgc aggtcttact tttcctaatg atttttattt tctggctgag cgtaaaattt
    18121 tcaactatgc cagtgttttt atcatgctta tcgagtatgt cgagggcgta gagctcaatg
    18181 atatgccgat tattccagaa aatgttaaag cagaaattaa ggcttcgatg gaaaaattgc
    18241 atgccttaaa tatgctatcg ggcgacccac accggggtaa ctttatcgtt agtaaagatg
    18301 gtgtcaggat aattgaccta tccggtaaaa gctgtacggc agagcgtaaa gctcgtgatc
    18361 gtctggccat ggaacgtcac ctgggtattg ccaacgaaat aaaagattat ggctactatt
    18421 cagtaatcta cagaaccaaa ctacgcaaat ttattaaaaa attaaaaggc aaagcgtaaa
    18481 ccacacagtc aaaacggaac caacatggat ttattagcag agagtattac tgaagtcgct
    18541 gtctctgggg aaattgctaa caccgatcgt gtgttaaata tcgcttacgg tattgaccgt
    18601 aactttttat ttggtgcggc agtatctatg caatcagttg ttatgcataa cccggacctt
    18661 gcggttaagt ttcatctctt taccgactac attgatgaag attatctaca acgtgttaat
    18721 gcttttacca gcaaaaatgc taacgttgaa gtaataattt ataaagtctc caatgccttt
    18781 attgatatct tccccagcct gaaacagtgg tcttatgcaa cattcttccg tttagttgcg
    18841 ttccagtatt tgagtgaaac tattgaaaat ctgttatata tcgatgctga tgtcatctgt
    18901 aaaggctcat tagctggatt gcttgatatt aattttgatg aggataagtt cgcagctgtt
    18961 attaaagatg tgccttttat gcaggaaaaa ccagcgaagc gtctggctat agagggactt
    19021 ccagggaatt atttcaacgc cggtgtagta tatctgcagc ttgaagcatg ggcgaaaaat
    19081 gattttatga ataaagccat tgctatgctg gcaagtgacc cgcagcacac gaagtataaa
    19141 tgccttgatc aggatatttt aaatattctg ttctttggtc attgtaattt tattagcggc
    19201 gattatgatt gcttttatgg cattgactat gagttaaaaa ataaaagcga tgaagattat
    19261 aaaaagacca ttaccgatga tactaagctg attcattatg ttggcgtaac gaagccctgg
    19321 aacgactgga cgaattatcc ctgccagaag tattttaatg aggcttatca ggcttcttgc
    19381 tggaatgatg tggcgtttat tccagccacg aatgaaaagc agtatcaagt gaaatatcaa
    19441 catgcaaaga aaaatggtga tacgtttaac gcttttattt acttcattaa atttaaatta
    19501 aataagtata aaagaaaact atttggataa taataaaaat catggatgtc tgagttacaa
    19561 taataattaa ggatgagtac tatcatattt tattagttca ggcaagagaa cacgatgagc
    19621 aatgattacc ctttagtatc tataataata ccgacgtata attcatctga ttacattact
    19681 gaaactctaa cgaaattaga aaaacaaact tacccaaatt ttgaaattgt tattgttaat
    19741 gatggttcta aagataacac atcaaacgtt ttgagagagt atgggttaac ccactctcga
    19801 ttaattattg tcaataaaga aaatggcggt gtttcgtctg ccaggaatac aggtatccgc
    19861 aaggcgcaag gacagtttat atgttttatg gatgatgatg atgagataga tcctaactat
    19921 ctgctgaaga tgtataccag acaacatgag acgggagggg atgcgattta ttgtgggctt
    19981 tatggccatt atataaaaga tggtgttact tactcaccta taaatacaga gtttaatgaa
    20041 ggatctttac ttttcgactt tttttataaa aaggttagat tccatatagg gtgcttgttt
    20101 ataagaaaac aacttctgga agagaataat cttttttttg atgaagattt acgactagga
    20161 gaagatcttg attttatcta tcgactgcta attacatgcg atatgtatgc ggttccatat
    20221 tatatgtata agcataacta tagagaaaat tccttaatga actcatgtag aaccatcact
    20281 cattatcgac atgagtcatt tgcgcacgaa agaatctact cttctgtgat gcagttatac
    20341 aaaggtaacc ggaaagaaga aattcataca ttattgagtc aaaatagagc ttatcataaa
    20401 actcgttatt tatggaatgt tctacttaat ggtgatttta aactattgaa tcaattagtt
    20461 gaaagcaatg aaaaagaatt aagatattgt aatcttcctg gcaagagaga taagagacga
    20521 gcaaaaatat tagcatcaaa aaattatatt ctctggagga tggtaagact ggtaaataga
    20581 aaaaagaata aacgttagat cttgcattaa ataacccatc ctcgtagcat aggttgaaat
    20641 tatatgtcgt tttgttggaa tgaaattaat tctggtataa agtctttaat tcttatatta
    20701 tgtatttttt ctttaatgac tttgtcttta tgggatgatg ttgcaacaaa gtttcttcat
    20761 gcagctggaa ttatatctgc attgtatttt cttgcgacac caaaaaaaac aataactaat
    20821 aatcctactt tgttaatttt catctcatta tgtcttttgg gtatcgtaaa tatcatctgg
    20881 tattcacatt ataaagtttc aggctctgtt tataccaatg catatcgtgg cccaatggaa
    20941 actggaaaaa ttgccttgtg tagcgctttt attttcttag ttctttttgc taaaaatgag
    21001 atgagaacaa aaataaaatt tgggaaacta attctgttcg catccctggc aacgcagtta
    21061 cttttttttg cgcatgccat gtggcaacat ttctatttaa acgtcgaccg tgttgcatta
    21121 tcagcttccc acgctacaac agcaggctac atcatccttt ttccttcttt actggcatca
    21181 attctcattt taaaatccga ctttagacat aaaacaacat tatatacaat taacttcatg
    21241 cttagcttat gtgctgtcat agtaactgag acgcgtgcag ccatattagt gtttccattc
    21301 tttgcgttaa tattaatcgt aatggatagt tatattaata agcgaattaa ttataagtta
    21361 tattgtttta ttgcgattgc attattagca ggtgtatttt cttttaaaga tacattgctt
    21421 atgagaatga atgacttaaa taacgattta gttaattatt cgcatgataa caccagaact
    21481 tcagtcggtg cccgtctggc aatgtatgaa gttggcttaa aaacatattc tccaatagga
    21541 caatcactgg aaaaacgtgc agaaaaaata catgagctag aagaaaaaga gcctagattg
    21601 agtggcgctt taccttttgt agattctcat ttgcataacg atctcataga tacgttatca
    21661 acgcgtggta ttcctggagt tgtattaaca attttagcat tttcagcaat actcatatat
    21721 gccttaagaa ctgctaaaga accttatatt ttaatcttgc ttttttcact actggtagta
    21781 ggcctaagtg atgtaatact cttttctaaa ccggttccga ctgctgtgtt tgtcaccata
    21841 atattgcttt gtgcttattt taaagcacaa tcagaccaat atttattaga taagtaatga
    21901 atatatgaaa taaaatcagc aaggaggctg attttatttc aaaattatct attaaggggt
    21961 tgtaatttaa atcatagcag cgttttcagc gttttcttca atgaatcgct taacagcatt
    22021 tgctgtcaat tgagacaact cattccccgg agccctacaa accatttgat tcttcccata
    22081 cccaccaatt aatcccggat cggttggtcc ataaaccgtg atattgggtc tatccagtgc
    22141 cgccgttaaa tggcttaacc ccgtatccac cgacactaca aatttagccc cggccagcac
    22201 gcgggcaacg ccttccagac tcatcttcgg caatacttca acataatcaa atccttccgc
    22261 cagtcgtttc gcccgttctt cctcatgcgg cgcgccccac ggaagtttaa tccgtattcc
    22321 tgaatcagcc agtaaaccaa tcaattctcg ccagtgttct tccggccagt gtttatcatc
    22381 acgggtcgtc gcatgaagaa atacggcata ttcgccagca tctgtaggca ggttcgtcag
    22441 aaaatgctgt gcgatagcat aatcgccctg ggtttgcggt ttgctatagc ccaaactttt
    22501 ggcaaacagt tcgcgggtgc gttctacggc gtgctgctgt tttgcaatat gatgcttaca
    22561 attgtaaaac aggctggcta aaggttcgcg agcggtttgc cagtccaatc catgctttac
    22621 gccatgcgcc agacgtgtca ccagtgccgc gctttttacc agcccctgag cgtcgataac
    22681 tgcgtcatag ttctctgctt gtagcgcttc acgaaacgct ttgcgttcag cttttatggg
    22741 ggccgagaac caggctttac gccagcgacg tattgccaca ggaataactc gctcaacggc
    22801 agcgtgccag gaaggaatct gtgcgaaccc ttcttccacc acccagtcaa acttaatccc
    22861 tgggattgcc tgctgggcat cagtgagtgc gggcaacgta tggagaacat cgcccatcga
    22921 cgatgtttta acgatcaaaa cccgcatccg tcaggcttcc tcttgtaaca atagcgtgtt
    22981 gagttcttcc agtacgcgct ggggagtaat gtcgatcaag ctctggtgat aaccctccgc
    23041 agcgtcacct ttacgcactt tgtgatagcc ggtaatcaga cggatcacgc gcgctttatg
    23101 ggatagcggc ggtgtgaagt ccgggctact tggaccatac agggcaacca gcggacgatt
    23161 gagcgccgcc gcaacgtgca tcaggccaga atcgttagtg acaatggctt tacaggctgc
    23221 aatcaggata accgcttgat caagctgtgt ttcccccgcc aggttccgac accatgcctg
    23281 ctgctcggta ttcaaagcgg caagaatctc attgcccgct tcatgatctt tcgcagagcc
    23341 aaacagaacc acctgataac cttcatcaat cagctgcttt gccagttccg catagtggta
    23401 gtgtggccag cgttttgccg gaccaaactc cgcacccggg caaaagccaa tcatcggacg
    23461 ttctgatgaa agcgaaaatt gattacaggt atatgatttt tcaccttcgc tcacctgcaa
    23521 ctgcggccat aacaatggct gcggcagatc ttgtgcggta cgcataatgc ctttgtcata
    23581 ggccagcgcg acatagcgtt ccaccattag cggccaggct tctttatcga gcacgcgtac
    23641 atcgttgagt aaaccgtagc gcatctcgcc gcgccagccg gtgcgatgag gaatacccgc
    23701 gaagaaaggc actaatgcag atttgaagga gttgggtaag acgtaggcgc ggtcgtagcg
    23761 cttttcacgc aggctatgac ccagtttgcg gcgttcgccg atttccagcg ctccgtgacc
    23821 gagaggcata gggatagctt cgttaacttc cggcatccgc gataataatg gacggcacca
    23881 tgccggtgcc atcacatcga ttatcgcctg gggatagcgc gcctggagcg tgcgatagag
    23941 actttgcgac atcatcatgt cgccaaccca agacgggccg atcaccagta ttttcatgca
    24001 gagctcttat gcgtcgcgat tcagccaggc catgtattcc gttacacctt cagcaacggt
    24061 tttgaacggt ttgtcgtaac ccgccgcgcg cagatttgtc agatctgcct gagtgaacgc
    24121 ctggtagcgg cctttcagct tatccgggaa cggaatgtat tcgatctggc ctttcttgtg
    24181 ataagccaga gtagcatctg ctacggcctg gaaggattcc gcacgaccag taccgaggtt
    24241 gaagataccg gaaacgccat tttccaggaa ccacaggttt acatctgcca cgtcgcccac
    24301 atagacgaag tcacgtttga agttctcgct accttcaaac agcttcggtg attcaccgtt
    24361 gttaagctga gtgttgagat ggaaagcgac gctcgccatg ctgcctttat ggccttcacg
    24421 cggtccataa acgttgaaat agcggaagcc aacaatctgc gagttcgctt caggcaggat
    24481 ttggcgaaca tattcatcaa acaggaattt tgagtaaccg tagacgttca acggtttttc
    24541 gtactcgcgg gattcaataa agtcggaggt gcgtccgccg taggtggctg cggaagaagc
    24601 gtacaggaac gggatttcgc gctccaggca gtagtgcagc agctccttgg agtattgata
    24661 gttgttatcc atcatatact tgccgtccca ctcggtggtg gaagagcatg cgccttcgtg
    24721 gaaaatcgct tcgacatcgc cgaactcttc gccagccata atctggatca ggaagtcttc
    24781 cttatccata tagtccgcga tatccagatc caccaggttc acaaacttgg tgccgtcttt
    24841 caggttgtcc accaccagaa tatcggtgat gcctttatca ttcagggcct taacgatgtt
    24901 gctgccgata aagcccgcgc cgccggtaac gatgatcata actgtaacct tcgaattatg
    24961 gagtcagaga caatctcaga cacgaatact tctatcatat cactatacgg cgttggcttc
    25021 agccattcgc caaaagtgag attgatggac gttatttatc ctgaattttg cagaagtgtt
    25081 aacgcgtcat ctcgtcgcga cgtataagtt tgggtaatat gtgctggaat ttgccctgtc
    25141 tggagaatcg caatgcgtgg agaattttat cagcagttaa ccaacgatct ggaaaccgca
    25201 cgggcggaag ggttgtttaa agaagagcgc attattacgt ctgcgcagca agcagatatc
    25261 actgtggctg atggaagcca cgtcattaac ttttgtgcca acaactatct cgggctggcg
    25321 aatcatccgg atctgattgc ggcagcaaag gcgggaatgg attctcacgg tttcggcatg
    25381 gcttcggtgc gttttatttg cggcactcag gacagccata aagagcttga acaaaaactg
    25441 gcggcattcc tggggatgga agatgcgatt ctctactctt cctgctttga tgctaacggt
    25501 ggactgtttg aaacgctgct gggtgcggaa gacgccatta tctccgacgc actgaaccac
    25561 gcgtctatta ttgatggtgt gcgtctgtgc aaagctaaac gctatcgcta tgccaacaac
    25621 gatatgcagg agctggaagc acgtctgaaa gaagcgcgtg aagccggtgc gcgtcatgtg
    25681 ctgattgcca ccgatggtgt gttctcaatg gacggcgtga ttgccaacct gaaaggcgtt
    25741 tgcgatctgg cagataaata cgatgccttg gtgatggtgg atgactccca cgcggtcggt
    25801 tttgtcggtg aaaatggtcg tggttcccat gaatactgcg atgtgatggg ccgggtcgat
    25861 attatcaccg gtacgcttgg taaagcgctg ggcggggctt ctggtggtta taccgcggcg
    25921 cgcaaagagg tggttgagtg gctgcgccag cgttctcgtc cgtacctgtt ctccaactcg
    25981 ctggcaccgg ccattgttgc cgcgtccatc aaagtactgg agatggtcga agcgggcagc
    26041 gaactgcgtg accgtctgtg ggcgaacgcg cgtcagttcc gtgagcaaat gtcggcggcg
    26101 ggctttaccc tggcgggagc cgatcacgcc attattccgg tcatgcttgg tgatgcggta
    26161 gtggcgcaga aatttgcccg agagctgcaa aaagagggca tttacgtcac cggtttcttc
    26221 tatccggtcg ttccgaaagg tcaggcgcgt attcgtaccc agatgtctgc ggcgcatacc
    26281 cctgagcaaa ttacgcgtgc agtagaagca ttcacgcgta ttggtaaaca actgggcgtt
    26341 atcgcctgag gatgtgagat gaaagcgtta tccaaactga aagcggaaga gggcatctgg
    26401 atgaccgacg tccctgtacc ggaactcggg cataacgatc tgctgattaa aatccgtaaa
    26461 acagccatct gcgggactga cgttcacatc tataactggg atgagtggtc gcaaaaaacc
    26521 atcccggtgc cgatggtcgt aggccatgaa tatgtcggtg aagtggtagg tattggtcag
    26581 gaagtgaaag gcttcaaaat cggcgatcgc gtttctggcg aaggccatat cacctgcggt
    26641 cactgtcgca actgtcgtgg cggtcgtacc catctgtgcc gcaacacgat cggcgtcggc
    26701 gttaaccgtc cgggctgctt cgccgaatat ctggtgatcc cggcgttcaa cgccttcaaa
    26761 atcccagaca atatctccga cgacctggct tccatttttg atcccttcgg taacgccgtg
    26821 cataccgcgc tgtcgttcga tctggttggc gaggatgtgc tggtctctgg tgcaggtccg
    26881 ataggtatta tggctgcggc ggtggcgaaa cacgttggtg cacgcaatgt ggtgatcact
    26941 gatgttaacg aataccgcct tgagctggcg cgcaaaatgg gtatcacccg tgcggttaac
    27001 gtcgcgaaag aaaaccttaa tgatgtgatg gctgaactgg gcatgaccga aggctttgat
    27061 gtcggtctgg aaatgtccgg tgcgccgcca gcgtttcgta ccatgcttga caccatgaac
    27121 cacggcggcc gtattgcgat gctgggtatt ccgccgtctg atatgtctat cgactggacc
    27181 aaagtgatct ttaaaggctt gttcattaaa ggtatttacg gtcgtgagat gtttgaaacc
    27241 tggtacaaga tggcggcgct gattcagtct ggcctcgatc tctcgccgat cattacccat
    27301 cgtttctcta tcgatgattt ccagaagggc tttgacgcta tgcgttcggg ccagtccggg
    27361 aaagtaattc tgagctggga ttaacacgaa caagggctgg tattccagcc cttttatctg
    27421 gggataatct gttgaatatg taaaatcctg tcagtgtaat aaagagttcg taattgcgct
    27481 gatctcttat atagctgttc tcattatctc tctaccctga agtgactctc tcacctgtaa
    27541 aaataatatc tcacaggctt aatagtttct taatacaaag cctgtaaaac gtcaggataa
    27601 cttcagaggt cgtcggtaat ttatgatgaa cagcaccaat aaacttagtg ttattattcc
    27661 gttatataat gcgggcgatg atttccgcac ttgtatggaa tctttaatta cgcaaaccta
    27721 gactgctctg gaaatcatta ttattaacga tggttcaacg gataattctg ttgaaatagc
    27781 aaagcattac gcagaaaact atccgcacgt tcgtttgttg catcaggcga atgctggcgc
    27841 atcggtagcg cgtaatcgtg ggatcgaggt ggcgacgggc aaatatgtcg cttttgtcga
    27901 tgctgacgat gaggtctatc ccaccatgta cgaaacgctg atgaccatgg cgttagagga
    27961 cgacctcgac gtggcgcagt gcaacgctga ctggtctttt cgtgaaacgg gagaaacctg
    28021 gcaatccatc cccagcgatc gccttcgctc aaccggcgta ttaaccggcc cggactggct
    28081 gcggatgggg ctttcttcgc gccgttggac tcacgttgtc tggatggggg tttatcgccg
    28141 tgatgttatt gttaaaaata acattaaatt tattgccgga ttacatcatc aggatattgt
    28201 ctggacaaca gaattcatgt ttaacgcgct gcgtgcgcga tataccgagc aatcattata
    28261 taaatattat ctgcataata cgtcagtgag tcggttgcat agacaaggga ataaaaacct
    28321 taattatcaa cgtcactata ttaagattac ccgcctgctg gagaaattaa atcgaaatta
    28381 tgccgacaaa attacgattt atccggaatt tcatcagcaa ataacttacg aagcattgcg
    28441 tgtttgccat gcggtgcgca aagagccgga tattcttacc cgccaacgga tgattgccga
    28501 gatatttact tccggtatgt ataagcgcct gattaccaat gtgcgcagcg tgaaggtcgg
    28561 ttaccaggcg ttactgtggt ctttccgctt atggcaatgg cgcgacaaaa cgcggtcgca
    28621 ccatcgcatt acgcgtagcg cctttaattt gcgctagcgt taaacttcgc cgcttcgggc
    28681 tgtttgcccc agccttgcca ctgatgctgg aagtaaacga tcagcgtgct ctggctgatg
    28741 ctttcgctta atacttcaaa gaagcgatta gcataaacag gttctatcgg tttcttcggt
    28801 ttgcacagct tcacgccacg gaacggatta cgcggtgcat caggcacagc gtttttcggc
    28861 ggtgtagaag tatcaacctg cggttcattc agcaagctgc tggctttcac cagcgtaatg
    28921 tctggcggca ggttataaac catctgttgt agcacgcgta ccgttaaagg gtgaggatgc
    28981 ccaatggcaa tggttgaacc gttgcgacgc gccagatcaa ttgcgcgatt aaattgcaca
    29041 cggatgtccg cttcgttctg cgaatcgtcg aggaacacct tccgtttaat aaccttcacg
    29101 ccagtacctt gcgcggcgcg catcgcctgg gtattaccga tggttacgct gtcgaggaag
    29161 taaagattgt aacgctccag tgcctgcatc actttctgca taccaaacag gttagaggtc
    29221 atcttgctac ccatgtggtt gttgatcccc acggcatagg gcacgttatt gaccgcacta
    29281 cgaataatgc gctcaatttc gtcgctgctc atctccgggc gcagcgtatt tttctccagc
    29341 ggctgtttac tcagtggtgc catcgggaga tgaatcaaca cttcgtgccc gctgttatgc
    29401 gctttggtcg ccatctctct ggcgtgcggt gaatcgggta atacagcgac ggagatagcg
    29461 gagggcatcg ccagcacctg gttttcgttg tgcgggcgat acccaaaatc atcaatgacg
    29521 atggcaagtt tgccagcaag tacgggggag gagagcgcca acagagcggc aaatgcaaga
    29581 acgttacgac gaaatggaaa caaaacttat cttcccaacc acggctgtgg attgaccgcc
    29641 tgaccctggc ggcgaatttc gaaatagagt gaaggccgac cctgaccgcc actgctgccc
    29701 accagtgcaa ttggctggcc cgcgcgaacc tgcgaaccaa cgctcaccag tgcgctctga
    29761 ttatagccgt aaagactcat gtcgccttta ccgtgctcaa ccaccaccac cagaccgtaa
    29821 ccttgcagcc agtcagccag aatcactcga ccgtcggcaa ttgctttaac ttcagtacct
    29881 tcagaggcac cgataaccat ccctttccag cgtaattcac cctgtagctg ctcgccatag
    29941 cgatgcagcg tcggcccgcg aaccggccag aatgcctgac cacgcggcgc acccagacca
    30001 ccagttcggg acatcagcga tttttcgctt tcggtcggtt tgtaggtggt gcctttgcgc
    30061 gtcgcttctt tctggcggtc gcgaaccgcc tgggcctcac gcgcttctcg ttcagcacgc
    30121 gctttcgccg cggcttccgc acgggcaatg ctgttacgca gacgggattc gttggcacgc
    30181 agttcactta gctgctgctg accttgctgg atggaagatt ccagccccgc cagcgtcttt
    30241 ttacgctcgt tcagagcctg agtcagtttc gcctgttggg cgcgctgttc atataacagc
    30301 gtttgttgct cgctttgttt ctcttccagt tcagcacgct gcatggcgac ttcttcacgc
    30361 gtttgcttca actgggcaat ggtttcttgt cgcgcctggt tgagatagcc gaaataagcc
    30421 tgtaaacgct gtccacactg gctttcttca ccgctgagaa ttagctgaat accggtatgc
    30481 tcgccctgac ggaatgcggc atccagttgt gcggcgaggc tgcgctcctg ggcggctttt
    30541 tgctgctcca gtttggcaat cgacgcgttc atctcatcaa tctgtttatt gagttgattg
    30601 agcgtgtttt gcgtttcgcg cagcttacgg gtggcttcag agatcgcttc ttcctgcttt
    30661 ttcaattgtg cgagcaggct tgcgcgttgt tgttgctttt ggcgtaccgc gcgctctttt
    30721 gcggcgatat cggcctgaat agatttgagt tggtcacgct catccgcgtg ggcggaaaag
    30781 gcgcacaaca atacgccagc gctaagaacg ctggcgtaga tgatgggcct gattgcaaac
    30841 ctgcgcggtt tcacggcccg tgtcatggta ttaatcgcct ttcccctcat ggggagggat
    30901 tattccacga tgaacagcgg cttaccagtc atctcttgcg ggatttccat acccatcagc
    30961 gacaacatgg tcggcgcgat gtcagaaagt ttgccgcctg caaccgcttt cacgttctta
    31021 tcaccaacgt aaatcagcgg aactggcagg ttggtgtgtg ccgtgtgtgc ctgacccgtt
    31081 gccggattgc gcatctgttc agcgttaccg tggtcagcgg tgatcagcag ttgtccaccc
    31141 acggactcaa ccgctttcgc gacttcttcc acgcagtgat ccagtgcttc aaccgcttta
    31201 accgccgctt ccatcacccc ggtgtgacct accatgtcgc cgttcggata gttacagata
    31261 atggtgtcgt atttgccgct cttgatggcc gcaaccagtt tttcggtcag ctctgcggag
    31321 ctcatttccg gttgcagatc gtaggtagcc actttcggtg agttgatcag aatgcgatct
    31381 tcgcctttga atgactcttc tacgccaccg ttgaagaaga aagtaacgtg ggcatatttt
    31441 tcggtttcgg aaatacgcaa ctgagttttg tcgtttttcg ccatccactc gccgaaggtg
    31501 ttaaccaggg aagcgggtgg gtaagcaacc gcagttttga tgtcagcggc gtattcggtc
    31561 agcatcacga aatcgacgtt aaccactttc ttacgcgcga agccgtcgaa atctgcgttt
    31621 acgaatgcac gagtgatttc gcgcgcgcgg tcagcacgga agttcatgaa aatcagcgca
    31681 tcgccgtctt ccattgccgc atctggctga ccttctgcac gaataacggt cgctttcacg
    31741 aactcgtcgt tttcgtcgcg agcataagct gcctgcaaac cagcaacggc agtatcggcc
    31801 tggaactcac cctgcgccag agtcagcagg tcataggctt tttcaacgcg atcccaacgg
    31861 ttatcgcggt ccatcgcgta gtaacgacca atgatggacg ctacgcggcc tttacccagc
    31921 gcagcaaatt tctcttcaaa ttttttcagc gaggattcag cactgcgcgg cggggtgtcg
    31981 cgaccgtcaa ggaatgcgtg caggtagatt ttttctgcgc cgcgttcagc tgccagttct
    32041 accatcgcca tgatgtgatc ttcgtggctg tgtacgccgc ctgcggagag cagacccata
    32101 atgtgtactg ctttacctgc gtttttcgct ttatctaccg cgccagtcag cactggatta
    32161 gcaaagaaag cgcgatcttt gatttcaacg tccagacgag tcaggtcctg atacacgatg
    32221 cggccggcac ccaggttaac gtggcctact tcggagttac ccatctgacg gtcaggcaga
    32281 ccgacttcca gaccggaagc gtcgatcagg gtatgcggac gattggccca cagtgcatcc
    32341 attaccgggg ttttagcact aaaaatggcg ttatcctgct gttcttcacg atagccatag
    32401 ccatccagaa tcaccagtac cataggtttt ttagaaaccg acattgcgac aacctcatac
    32461 tcaagagtca aaatttgcgt aattttacta cagctgaatc gataaaatag cctctgaaga
    32521 tcaaaatata cgaccgctcg cggcaagccg atgccagatt tgcgcttttt tttcgtcgtg
    32581 ccccgcaaaa ttgcattcca gttaacgcgc tggctgtatt tgccgcaccg cgcaggtata
    32641 ctcctttcct ggttttttta atcactacgt cgggagttgt taccccccat gcaagaaatt
    32701 atgcaatttg ttggccgtca tcccatactg agtatcgctt ggatcgcgtt actggtggcg
    32761 gttcttgtga ctacgtttaa gagcctgacc tcgaaagtga aggtgattac tcgtggtgaa
    32821 gctacgcgtc tgatcaacaa agaagacgct gtggttgtgg atttacgtca gcgtgatgac
    32881 ttccgtaaag gccatatcgc aggttctatc aatctgttgc cgagcgaaat caaagccaac
    32941 aatgttggtg agcttgagaa gcacaaagac aaaccggtta tcgtggtaga cggttctggc
    33001 atgcagtgcc aggagcctgc aaacgcgctg acgaaagctg gttttgcgca agtattcgtg
    33061 ctgaaagagg gcgttgctgg ctgggctggc gaaaacttgc ctctggtgcg cggcaaataa
    33121 tttacctgtc gtctttcatg atgcaggccg ttagctgcaa ttaggccccc agcgacttat
    33181 tgttataagc ttctggggac actccatttt gcagccgccc tgcaacatga aatttcaggg
    33241 taaaaaaaca ggagctaaat tatggccaat gttgaaatct ataccaaaga aacctgcccg
    33301 tattgccatc gtgcaaaagc actgctgagc agcaagggcg tgagttttca ggagttgccg
    33361 atcgatggca atgccgccaa gcgtgaagag atgatcaaac gcagcggtcg caccacggtt
    33421 ccccagattt ttattgacgc acagcacatt ggcggctgtg atgacttgta tgcattggat
    33481 gcacgtggtg gactggatcc cctgctgaaa taacgtgtga acgttggcat tacattgcgc
    33541 agtatttaag gacaacactt aagggttttc tacacatgtc agaacaaaac aacactgaaa
    33601 tgactttcca gatccaacgt atttatacca aggatatctc tttcgaagcg ccgaacgcgc
    33661 cgcacgtttt ccagaaagat tggcaaccag aagttaaact tgatctggat acggcatctt
    33721 cccaactggc agatgacgta tacgaagtgg tactgcgtgt taccgtaacg gcctccctgg
    33781 gcgaagaaac cgcgttcctg tgtgaagttc agcagggcgg tattttctcc atcgcgggta
    33841 tcgaaggcac ccagatggca cattgcctgg gcgcatactg cccgaacatt ctgttcccgt
    33901 atgctcgtga gtgcatcacc agcatggtat cccgcggtac attcccgcaa ctgaaccttg
    33961 cgccggttaa cttcgatgcg ctgttcatga actatttgca gcagcaggct ggcgaaggta
    34021 ctgaagaaca tcaggatgcc tgatgaacca acgtaatgct tcaatgactg tgatcggtgc
    34081 cggctcgtac ggcaccgctc ttgccattac cctggcaaga aatggccacg aggttgtcct
    34141 ctggggccat gaccctgaac atatcgcaac gcttgaacgc gaccgctgta acgccgcgtt
    34201 tctccccgat gtgccttttc ccgatacgct ccatcttgaa agcgatctcg ccactgcgct
    34261 ggcagccagc cgtaatattc tcgtcgtcgt acccagccat gtctttggtg aagtgctgcg
    34321 ccagattaaa ccgctgatgc gtcctgatgc gcgtctggtg tgggcgacca aagggctgga
    34381 agcggaaacc ggacgtctgt tacaggacgt ggcgcgtgag gccttaggcg atcaaattcc
    34441 gctggcggtt atctctggcc caacgtttgc gaaagaactg gcggcaggtt taccgacggc
    34501 tatttcgttg gcctctaccg accagacctt tgccgatgat ctccaacaat tgctgcactg
    34561 tggcaaaagt ttccgcgttt acagcaaccc ggatttcatc ggtgtgcagc ttggcggtgc
    34621 ggtgaaaaac gtcattgcca ttggcgcggg gatgtccgac ggtatcggtt ttggtgcgaa
    34681 tgcgcgtacg gcactgatca cccgtgggct ggctgaaatg tcgcgtcttg gcgcggcgct
    34741 gggtgccgag cctgccacct ttatgggcat ggcggggctg ggcgatcttg tgcttacctg
    34801 taccgacaac cagtcgcgta accgccgttt tggcatgatg ctcggtcagg gcatggatgt
    34861 acaaagcgcg caggagaaga ttggtcaggt ggtggaaggc taccgcaata cgaaagaagt
    34921 ccgcgaactg gcgcatcgct tcggcgtaga aatgccaata accgaggaaa tttatcaagt
    34981 attatattgc ggaaaaaacg cgcgcgaggc agcattgacg ttattaggtc gtgcacgcaa
    35041 ggacgagcgc agcagccact aaccccaggg aacctttgtt accgctatga cccggcccgc
    35101 gcagaacggg ccggtcatta tctcatcgtg tggagtaagt aatgtcgtgt gaagaactgg
    35161 aaattgtctg gaacaatatt aaagccgaag ccagaacgct ggcggactgt gagccaatgc
    35221 tggccagttt ttaccacgcg acgctactca agcacgaaaa ccttggtagt gcactgagct
    35281 acatgctggc gaacaagctg tcatcgccaa ttatgcctgc tattgctatc cgtgaagtgg
    35341 tggaagaagc ctacgccgct gacccggaaa tgatcgcctc tgcggcctgt gatattcagg
    35401 cggtgcgtac ccgcgacccg gcagtcgata aatactcaac cccgttgtta tacctgaagg
    35461 gttttcatgc cttgcaggcc tatcgcatcg gtcactggtt gtggaatcag gggcgtcgcg
    35521 cattggcaat ctttctgcaa aaccaggttt ctgtgacgtt ccaggtcgat attcacccgg
    35581 cagcaaaaat tggccgtggc attatgctcg accacgccac gggcatcgtt gtgggtgaaa
    35641 cggcggtaat tgaaaacgac gtatcgattc tgcaatctgt gacgcttggc ggtacgggta
    35701 aatctggtgg tgaccgtcac ccgaaaattc gtgaaggtgt gatgattggc gcgggcgcga
    35761 aaatcctcgg caatattgaa gttggtcgcg gcgcgaagat tggcgcaggt tccgtggtgc
    35821 tgcaaccggt gccgccgcat acaaccgccg ctggcgttcc ggctcgtatt gtcggtaaac
    35881 cagacagcga taagccatca atggatatgg accagcattt caacggtatt aaccatacat
    35941 ttgagtatgg ggatgggatc taatgtcctg tgatcgtgcc ggatgcgatg taatcatcta
    36001 tccggcatac agtaactaat ctctcaacaa cgctcccgga tatcccagct gccgccaggc
    36061 ttcatacacc actaccgaca ccgcattgga cagattcatg ctgcggctgt ccggcaccat
    36121 cggaatgcga attttttgtt cagcgggcag ggcatcaaga atgctcgctg gcaggccgcg
    36181 tgtttccggg ccgaacatca gataatcgcc atcctgatag cttacggcgc tgtgagcagg
    36241 cgtacctttc gtggtgaggg caaacaggcg ctggggattt tctgcttcga ggaacgcgcg
    36301 atagtcatga tgacgcgtaa cggcggtaaa ctcgtgatag tccagccccg cgcggcgcag
    36361 gcgcttatcg tcccaggcaa atcccatcgg ttcgatgata tgcagacgaa agccggtatt
    36421 agcgcaaaga cggatgatgt tgccagtatt tggcggaatt tctggttcgt aaagtacgat
    36481 gtttagcata ctgccccctt agtgcggggg caggatagca gaaaattggt gaaccgtgcg
    36541 gccttttccc ctcaccccgg ccctccccct gtctcttgat caggagatct gatcaagaga
    36601 cagctccctg agggagaggg t
//
LOCUS       DADMJB010000019        36505 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.019, whole genome shotgun sequence.
ACCESSION   DADMJB010000019 DADMJB010000000
VERSION     DADMJB010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 36505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36505
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.019"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            93..989
                     /locus_tag="JN078_000873"
     CDS             93..989
                     /locus_tag="JN078_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417396.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY9040159.1"
                     /translation="MDIFISKKMRNFILLAQTNNIARAAEKIHMTASPFGKSIAALEE
                     QIGYTLFTRKDNNISLNKAGQELYQKLFPVYQRLSAIDNEIHNSGRRSREIVIGIDNT
                     YPTIIFDQLISLGDKYEGVTAQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELEN
                     LTISELPPLRLGFLVSRRYEERQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGIN
                     PTIIYRPYSFMAKISAVERGHFLTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSI
                     RNHRYTATMLQHIAEDRDGTNH"
     gene            complement(986..2464)
                     /gene="scpC"
                     /locus_tag="JN078_000874"
     CDS             complement(986..2464)
                     /gene="scpC"
                     /locus_tag="JN078_000874"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propionyl-CoA:succinate CoA transferase"
                     /protein_id="HAY9040160.1"
                     /translation="METQWTRMTADEAAEIIQHNDMVAFSGFTPAGSPKALPTAIARR
                     ANEQHEAKKPYQIRLLTGASISAAADDVLSDADAVSWRAPYQTSSGLRKKINQGAVSF
                     VDLHLSEVAQMVNYGFFGDIDVAVIEASALAPDGRVWLTSGIGNAPTWLLRAKKVIIE
                     LNHYHDPRVAELADIVIPGAPPRRNSVSIFHAMDRVGTRYVQIDPKKIVAVVETNLPD
                     AGNMLDKQNPMCQQIADNVVTFLLQEMAHGRIPPEFLPLQSGVGNINNAVMARLGENP
                     EIPPFMMYSEVLQESVVHLLETDKISGASASSLTISADSLRKIYDNMDYFASRIVLRP
                     QEISNNPEIIRRLGVIALNVGLEFDIYGHANSTHVAGVDLMNGIGGSGDFERNAYLSI
                     FMAPSIAKEGKISTVVPMCSHVDHSEHSVKVIITEQGIADLRGLSPLQRARTIIDNCA
                     HPMYRDYLHRYLENAPGGHIHHDLSHVFDLHRNLIATGSMLG"
     gene            complement(2488..3273)
                     /gene="scpB"
                     /locus_tag="JN078_000875"
     CDS             complement(2488..3273)
                     /gene="scpB"
                     /locus_tag="JN078_000875"
                     /EC_number="7.2.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311816.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA decarboxylase"
                     /protein_id="HAY9040161.1"
                     /translation="MSYQYVNVATINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN
                     RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISM
                     VEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKEL
                     IFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGE
                     AHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFVGH"
     gene            complement(3284..4279)
                     /gene="meaB"
                     /locus_tag="JN078_000876"
     CDS             complement(3284..4279)
                     /gene="meaB"
                     /locus_tag="JN078_000876"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl Co-A mutase-associated GTPase
                     MeaB"
                     /protein_id="HAY9040162.1"
                     /translation="MINEATLAESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLL
                     DAIMPYCGNTLRLGVTGTPSAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSIL
                     GDKIRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQS
                     ETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE
                     SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIEFKTALTASGRLQQVRQQQSVE
                     WLRKQTEEEVLNHLFANEDFDRYYRQTLLAVKNNTLSPRTGLRQLSEFIQTQYFD"
     gene            complement(4272..6416)
                     /gene="scpA"
                     /locus_tag="JN078_000877"
                     /pseudo
     CDS             complement(4272..6416)
                     /gene="scpA"
                     /locus_tag="JN078_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417392.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase"
     gene            complement(6620..7513)
                     /locus_tag="JN078_000878"
     CDS             complement(6620..7513)
                     /locus_tag="JN078_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator ArgP"
                     /protein_id="HAY9040163.1"
                     /translation="MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLEN
                     MFGQPLLVRTVPPRPTEQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNADSL
                     ATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLG
                     ALDYLFVSSKPFAEKYFPNGVTRSALLKAPVVAFDHLDDMHQAFLQQNFDLPPGSVPC
                     HIVNSSEAFVQLARQGTTCCMIPHLQIEKELASGELIDLTPGLFQRRMLYWHRFAPES
                     RMMRKVTDALLDYGHKVLRQD"
     gene            7896..8555
                     /gene="rpiA"
                     /locus_tag="JN078_000879"
     CDS             7896..8555
                     /gene="rpiA"
                     /locus_tag="JN078_000879"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HAY9040164.1"
                     /translation="MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKG
                     QIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTR
                     EKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQGV
                     VTDNGNVILDVHGMEILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIV
                     K"
     gene            8810..10042
                     /locus_tag="JN078_000880"
     CDS             8810..10042
                     /locus_tag="JN078_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-3-phosphoglycerate dehydrogenase"
                     /protein_id="HAY9040165.1"
                     /translation="MAKVSLEKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDD
                     EQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVF
                     NAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYG
                     HIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTK
                     NMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDP
                     FTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPL
                     HGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEK
                     ALQAMKAIPGTIRARLLY"
     gene            10271..10330
                     /gene="ibsC"
                     /locus_tag="JN078_000881"
     CDS             10271..10330
                     /gene="ibsC"
                     /locus_tag="JN078_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin IbsC"
                     /protein_id="HAY9040166.1"
                     /translation="MMRLVIILIVLLLISFGAY"
     gene            10663..10722
                     /locus_tag="JN078_000882"
     CDS             10663..10722
                     /locus_tag="JN078_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HAY9040167.1"
                     /translation="MMRLAIILIVLLLISFPAY"
     gene            complement(10823..11425)
                     /locus_tag="JN078_000883"
     CDS             complement(10823..11425)
                     /locus_tag="JN078_000883"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HAY9040168.1"
                     /translation="MTQLPELPLTLSRQEIRKMIRQRRRALTPEQQQEMGQQAATRMM
                     TYPPVVMAHTVAVFLSFDGELDTQPLIEQLWRAGKRVYLPVLHPFSAGNLLFLNYHPQ
                     SELVMNRLKIHEPKLDVRDVLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQ
                     HYKTQPVGYAHDCQLVEKLPVEEWDIPLPAVVTPSKVWEW"
     gene            complement(11446..11629)
                     /gene="ssrS"
                     /locus_tag="JN078_000884"
     ncRNA           complement(11446..11629)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="JN078_000884"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(11671..12000)
                     /gene="zapA"
                     /locus_tag="JN078_000885"
     CDS             complement(11671..12000)
                     /gene="zapA"
                     /locus_tag="JN078_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HAY9040169.1"
                     /translation="MSAQPVDIQIFGRSLRVNCPPDQRDALNQAADDLNQRLQDLKER
                     TRVTNTEQLVFIAALNISYELAQEKAKTRDYAASMEQRIRMLQQTIEQALLEQGRITE
                     KTNQNFE"
     gene            12168..12746
                     /gene="ygfB"
                     /locus_tag="JN078_000886"
     CDS             12168..12746
                     /gene="ygfB"
                     /locus_tag="JN078_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708672.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein YgfB"
                     /protein_id="HAY9040170.1"
                     /translation="MSIQNEMPGYNEMNQYLNQQGTGLTPAEMHGLISGMICGGNDDS
                     SWLPLLHDLTNEGMAFGHELAQALRKMHSATSDALQDDGFLFQLYLPDGDDVSVFDRA
                     DALAGWVNHFLLGLGVTQPKLDKVTGETGEAIDDLRNIAQLGYDEDEDQEELEMSLEE
                     IIEYVRVAALLCHDTFTHPQPTAPEVQKPTLH"
     gene            12772..14097
                     /gene="pepP"
                     /locus_tag="JN078_000887"
     CDS             12772..14097
                     /gene="pepP"
                     /locus_tag="JN078_000887"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HAY9040171.1"
                     /translation="MSEISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPY
                     RQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEK
                     LGVDRALAFSEINQQLYQLLNGLDVVYHAQGEYAYADEIMNSALEKLRKGSRQNLTAP
                     ATMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH
                     EFNRHSARYPSYNTIVGSGENGCILHYTENESELRDGDLVLIDAGCEYKGYAGDITRT
                     FPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKG
                     DVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPD
                     AEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEIEALMAAARKQ"
     gene            14094..15272
                     /gene="ubiH"
                     /locus_tag="JN078_000888"
                     /gene_synonym="visB"
     CDS             14094..15272
                     /gene="ubiH"
                     /locus_tag="JN078_000888"
                     /gene_synonym="visB"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-6-methoxyphenyl hydroxylase"
                     /protein_id="HAY9040172.1"
                     /translation="MSVIIVGGGMAGATLALAISRLSHGALPVHLIEATAPESHAHPG
                     FDGRAIALAAGTCQQLARIGVWQSLADCATAITTVHVSDRGHAGFVTLAAEDYQLAAL
                     GQVVELHNVGQRLFALLRKAPGVTLHCPDRVANVARTQSHVEVTLESGETLTGRVLVA
                     ADGTHSALATACGVDWQQEPYEQLAVIANVATSVAHEGRAFERFTQHGPLAMLPMSDG
                     RCSLVWCHPLERREEVLSWSDEKFCRELQSAFGWRLGKITHAGKRSAYPLALTRAARA
                     ITHRTVLVGNAAQTLHPIAGQGFNLGMRDVMSLAETLTQAHERGEDIGDYGILCRYQQ
                     RRQSDREATIGVTDSLVHLFANRWAPLVVGRNIGLMTMELFTPARDVLAQRTLGWVAR
                     "
     gene            15295..16497
                     /gene="ubiI"
                     /locus_tag="JN078_000889"
                     /gene_synonym="visC"
     CDS             15295..16497
                     /gene="ubiI"
                     /locus_tag="JN078_000889"
                     /gene_synonym="visC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent 2-octaprenylphenol hydroxylase"
                     /protein_id="HAY9040173.1"
                     /translation="MQCVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADA
                     PPQLRVSAINAASEKLLTRLGVWQDILSRRASCYHGMEVWDKDSFGHISFDDQSMGYS
                     HLGHIVENSVIHYALWNKAQQSSDITLLAPAELQQVAWGENETFLTLKDGSMLTARLV
                     IGADGANSWLRNKADISLTFWDYQHHALVATIRTEEPHDAVARQVFHGEGILAFLPLS
                     DPHLCSIVWSLSPEEAQRMQQASEDEFNRALNIAFDNRLGLCKVESARQVFPLTGRYA
                     RQFAAHRLVLVGDAAHTIHPLAGQGVNLGFMDAAELIAELKRLHRQGKDIGQYIYLRR
                     YERSRKHSAALMLAGMQGFRDLFSGTNPAKKLLRDIGLKLADTLPGVKPQLIRQAMGL
                     NDLPEWLR"
     gene            complement(16571..16654)
                     /locus_tag="JN078_000890"
     CDS             complement(16571..16654)
                     /locus_tag="JN078_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040174.1"
                     /translation="MSKNTKSKNNDIRKYNAKTEVKLVYFK"
     gene            16944..18038
                     /gene="gcvT"
                     /locus_tag="JN078_000891"
     CDS             16944..18038
                     /gene="gcvT"
                     /locus_tag="JN078_000891"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HAY9040175.1"
                     /translation="MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRTDA
                     GMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVY
                     YFTEDFFRLVVNSATREKDLSWITQHAEPFGIEITVRDDLSMIAVQGPNAQAKAATLF
                     NDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKP
                     CGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTIAWEPADRDFIGREALEVQREH
                     GTEKLVGLVMTEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI
                     GETAIVQIRNREMPVKVTKPVFVRNGKAVA"
     gene            18062..18451
                     /gene="gcvH"
                     /locus_tag="JN078_000892"
     CDS             18062..18451
                     /gene="gcvH"
                     /locus_tag="JN078_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HAY9040176.1"
                     /translation="MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVD
                     LPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWI
                     FKIKASDESELESLLDATAYEALLEDE"
     gene            18570..21443
                     /gene="gcvP"
                     /locus_tag="JN078_000893"
     CDS             18570..21443
                     /gene="gcvP"
                     /locus_tag="JN078_000893"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase"
                     /protein_id="HAY9040177.1"
                     /translation="MTQTLSQLENSGAFIERHIGPDAAQQQEMLNAVGAQSLNALTGQ
                     IVPKDIQLATPPQVGAPATEYAALAELKAIASRNKRFTSYIGMGYTAVQLPPVILRNM
                     LENPGWYTAYTPYQPEVSQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAM
                     AKRVSKLKNANRFFVASDVHPQTLDVVRTRAETFGFEVIVDDAQKVLDHQDVFGVLLQ
                     QVGTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVP
                     MGYGGPHAAFFAAKDEYKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNI
                     CTSQVLLANIASLYAVYHGPVGLKRIANRIHRLTDILAAGLQQKGLKLRHAHYFDTLC
                     VEVADKAGVLARAEAAEINLRSDILNAVGITLDETTTRENVMQLFSVLLGDNHGLEID
                     TLDKDVAHDSRSIQPAMLRDDEILTHPVFNRYHSETEMMRYMHSLERKDLALNQAMIP
                     LGSCTMKLNAAAEMIPITWPEFAELHPFCPPEQAEGYQQMIAQLADWLVKLTGYDAVC
                     MQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPASAHGTNPASAHMAGMQVVVVAC
                     DKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDG
                     ANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVV
                     QIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQD
                     AFPVLYTGRDGRVAHECILDIRPLKEETSISELDIAKRLIDYGFHAPTMSFPVAGTLM
                     VEPTESESKVELDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAEWAHP
                     YSHEVAVFPAGVADKYWPTVKRLDDVYGDRNLFCSCVPISEYQ"
     gene            21709..22452
                     /locus_tag="JN078_000894"
                     /pseudo
     CDS             21709..22452
                     /locus_tag="JN078_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417378.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
     gene            complement(22509..23942)
                     /locus_tag="JN078_000895"
     CDS             complement(22509..23942)
                     /locus_tag="JN078_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708664.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HAY9040178.1"
                     /translation="MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHG
                     VPREITKEVLPGKYYPNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEA
                     QPNEEGLKFYDSLFDELLKYNIEPVITLSHFEIPLHLVQQYGSWTNRKVVDFFVRFAE
                     VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHDNPEETMYQVLHHQFV
                     ASALAVKAARRINPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGY
                     YPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMINAVKAEGGTGDAISGFE
                     GSVPNPYVKASDWCWQIDPVGLRYALCELYERYQRPLFIVENGFGAYDKVEEDGSIND
                     DYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDD
                     GTGDMSRSRKKSFNWYKEVIASNGEKL"
     gene            23987..24298
                     /locus_tag="JN078_000896"
     CDS             23987..24298
                     /locus_tag="JN078_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HAY9040179.1"
                     /translation="MQPNDITFSQRFQDDILAGRKTITIRDESESHFKTGDVLRVGRF
                     EDDGYFCTIEVTATSTVTLDTLTEKHAEQENMTLTELIKVIADIYPGQTQFYVIEFKC
                     L"
     gene            24462..25121
                     /locus_tag="JN078_000897"
     CDS             24462..25121
                     /locus_tag="JN078_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HAY9040180.1"
                     /translation="MVQKPLIKQGYSLAEEIANSVSHGIGLVFGIVGLVLLLVQAVDL
                     NASATAITSYSLYGGSMILLFLASTLYHAIPHQRAKMWLKKFDHCAIYLLIAGTYTPF
                     LLVGLDSPLARGLMIVIWSLALLGILFKLTIAHRFKILSLVTYLAMGWLSLVVIYEMA
                     VKLAAGSVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSMCHFLAIYLYIGQ
                     A"
     gene            complement(25198..26178)
                     /gene="ygfZ"
                     /locus_tag="JN078_000898"
     CDS             complement(25198..26178)
                     /gene="ygfZ"
                     /locus_tag="JN078_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-modifying protein YgfZ"
                     /protein_id="HAY9040181.1"
                     /translation="MAFTPFPPRQPTASARLPLTLMTLDDWALATITGADSEKYMQGQ
                     VTADVSQMTENQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIERRSVREPQLTELKKYA
                     VFSKVTIAADDERVLLGVAGFQARAALANLFSELPSREKQVVKEGATTLLWFEHPAER
                     FLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQA
                     LGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGSASRLPEAGEDLELKMGENWRRT
                     GTVLAAVKLEDGQVVVQVVMNNDMEPDSIFRVRDDANTLHIEPLPYSLEE"
     gene            26421..26687
                     /gene="sdhE"
                     /locus_tag="JN078_000899"
     CDS             26421..26687
                     /gene="sdhE"
                     /locus_tag="JN078_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000354044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD assembly factor SdhE"
                     /protein_id="HAY9040182.1"
                     /translation="MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFI
                     RLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRNRERGPVAI"
     gene            26668..27075
                     /locus_tag="JN078_000900"
     CDS             26668..27075
                     /locus_tag="JN078_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin CptA"
                     /protein_id="HAY9040183.1"
                     /translation="MVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMV
                     LLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQEWSIVKAPWMIKSGMMLRLRSD
                     GGKRQHLWLAADSMDEAEWRDLRRILLQQETQR"
     gene            complement(27115..27636)
                     /gene="fldB"
                     /locus_tag="JN078_000901"
     CDS             complement(27115..27636)
                     /gene="fldB"
                     /locus_tag="JN078_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldB"
                     /protein_id="HAY9040184.1"
                     /translation="MNMGLFYGSSTCYTEMAAEKIRDIIGPELVTLHNLKDDSPKLME
                     QYDVLILGIPTWDFGEIQEDWEAVWDQLDDLNLEGKIVALYGLGDQLGYGEWFLDALG
                     MLHDKLSTKGVKFVGYWPTEGYEFTSPKPVIADGQLFVGLALDETNQYDLSDERIQSW
                     CEQILNEMAEHYA"
     gene            27748..28644
                     /gene="xerD"
                     /locus_tag="JN078_000902"
     CDS             27748..28644
                     /gene="xerD"
                     /locus_tag="JN078_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HAY9040185.1"
                     /translation="MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG
                     LTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLAS
                     PKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI
                     SLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQM
                     TRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTT
                     QIYTHVATERLRQLHQQHHPRA"
     gene            28669..29379
                     /gene="dsbC"
                     /locus_tag="JN078_000903"
     CDS             28669..29379
                     /gene="dsbC"
                     /locus_tag="JN078_000903"
                     /EC_number="5.3.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000715205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional protein-disulfide
                     isomerase/oxidoreductase DsbC"
                     /protein_id="HAY9040186.1"
                     /translation="MKKGFMLFTLLAAFSGFAQADDAAIQQTLAKMGIKSSDIQPAPV
                     AGMKTVLTNSGVLYITDDGKHIIQGPMYDVSGAAPVNVTNKMLLKQLNALEKEMIVYK
                     APQEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLESQAEQQMKAIW
                     CAKDKNKAFDDVMAGKAATPASCDIDIADHYALGVQLGVSGTPAIVLSNGTLVPGYQP
                     PKEMKEFLDEHQKMTSGN"
     gene            29385..31118
                     /gene="recJ"
                     /locus_tag="JN078_000904"
     CDS             29385..31118
                     /gene="recJ"
                     /locus_tag="JN078_000904"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HAY9040187.1"
                     /translation="MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERS
                     VKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSN
                     IDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTD
                     HHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERGIA
                     IPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQ
                     KLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQ
                     GMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG
                     DGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFELFQQRFG
                     ELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ
                     QRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRS
                     LQIIIDNIWPI"
     gene            31209..32307
                     /gene="prfB"
                     /locus_tag="JN078_000905"
     CDS             join(31209..31283,31285..32307)
                     /gene="prfB"
                     /locus_tag="JN078_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311790.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HAY9040188.1"
                     /translation="MFEINPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQP
                     DVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAE
                     LDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRG
                     FKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFS
                     SAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQN
                     DRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK
                     DLRTGVETRNTQAVLDGSLDQFIEASLKAGL"
     gene            32317..33834
                     /gene="lysS"
                     /locus_tag="JN078_000906"
     CDS             32317..33834
                     /gene="lysS"
                     /locus_tag="JN078_000906"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HAY9040189.1"
                     /translation="MSEQHAQGADAVVDLNNELKTRREKLANLREQGIAFPNDFRRDH
                     TSDQLHAEFDGKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARD
                     DLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGL
                     QDQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGA
                     AARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFT
                     MMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIK
                     KYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITK
                     YPAEVSPLARRNDINPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAG
                     DDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAMRPVK"
     gene            complement(33877..34425)
                     /gene="idi"
                     /locus_tag="JN078_000907"
     CDS             complement(33877..34425)
                     /gene="idi"
                     /locus_tag="JN078_000907"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HAY9040190.1"
                     /translation="MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKG
                     QLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDF
                     RYRATDPNGIVENEVCPVFAARTNSALQINDDEVMDYQWCDLADVLHGIDATPWAFSP
                     WMVMQAANSEARKLLSAFAQHN"
     gene            34480..34551
                     /locus_tag="JN078_000908"
     CDS             34480..34551
                     /locus_tag="JN078_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040191.1"
                     /translation="MINQVSVYRQPPVLSGCRQVKTI"
     gene            complement(34548..34673)
                     /locus_tag="JN078_000909"
     CDS             complement(34548..34673)
                     /locus_tag="JN078_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040192.1"
                     /translation="MNLLMRAIFSLLLLFTLSIPVISDCVAMAIESRFKYMMLLF"
     gene            complement(34675..36123)
                     /locus_tag="JN078_000910"
     CDS             complement(34675..36123)
                     /locus_tag="JN078_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417364.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine permease"
                     /protein_id="HAY9040193.1"
                     /translation="MSAIDSQLLSSSGQDRPTDEVDRILSPGKLIILGLQHVLVMYAG
                     AVAVPLMIGDRLGLSKEAIAMLISSDLFCCGIVTLLQCIGIGRFMGIRLPVIMSVTFA
                     AVTPMIAIGMNPDIGLLGIFGATIAAGFITTLLAPLIGRLMPLFPPLVTGVVITSVGL
                     SIIQVGIDWAAGGKGNPQYGNPVYSGISFAVLIFILLITRYAKGFMSNVAVLLGIVFG
                     FLLSWMMNEVNLSGLHDALWFAIVTPMSFGMPIFDPVSILTMTAVLIIVFIESMGMFL
                     ALGEIVGRKLSSHDIIRGLRVDGVGTMIGGTFNSFPHTSFSQNVGLVSVTRVHSRWVC
                     ISSGIILILFGMVPKMAVLVASIPQFVLGGAGLVMFGMVLATGIRILSRCNYTTNRYN
                     LYIVAISLGVGMTPTLSHDFFSKLPAVLQPLLHSGIMLATLSAVVLNVFFNGYQHHAD
                     LVKESVSDKDLKVRTVRMWLLMRKLKKNEHGE"
BASE COUNT         8796 a         9188 c         9762 g         8759 t
ORIGIN      
        1 ccccccggat catggacgac tgggggcagt aatcatgccg ggtctggctg gctaacaccc
       61 cattataagg agtacgaata aagtaacggg ggatggacat ttttatttcg aaaaagatgc
      121 gcaatttcat tttattagcg caaaccaata atattgcccg ggcggcagaa aaaatccata
      181 tgacggcttc gccatttggt aaaagcattg ccgcgctgga agaacaaatt ggctatacgc
      241 tatttacccg caaagataat aatatcagcc tcaataaagc cggtcaggaa ctgtatcaaa
      301 aactgttccc ggtttatcaa cgactttctg cgattgataa tgaaatccat aactcagggc
      361 gtcgttcacg agaaattgtg attggcatag ataatactta tccgacaatt attttcgatc
      421 agttgattag tctcggagat aagtatgaag gcgtgaccgc ccagccagtt gagttcagcg
      481 aaaacggcgt tatcgataat ctttttgacc gtcagttaga ttttattatc tccccacagc
      541 atgtatctgc acgagttcag gaactggaaa acctgactat cagtgaatta ccaccgctgc
      601 gattgggctt tctcgtttct cgccgttatg aagagcgtca agagcaagag ctgcttcagg
      661 agctgccctg gctacaaatg cgctttcaaa accgggctaa cttcgaagca atgattgatg
      721 cgaatatgcg accttgtggg atcaatccca ccattattta tcgtccctac agttttatgg
      781 ccaaaatcag cgccgtggag cgcggacatt ttctgacggt gatcccgcat tttgcctggc
      841 gactggtgaa tccggcaacg ctgaaatatt ttgatgcgcc gcacaggccg atgtatatgc
      901 aggaatatct ttattcaatc agaaatcatc gttataccgc cacgatgctt cagcatattg
      961 ctgaagatcg tgacgggaca aaccattaac ccagcatcga gccggttgca attaaattac
     1021 ggtgtaagtc gaagacgtgg ctaagatcgt ggtgaatatg tccgccgggc gcattttcca
     1081 gatagcgatg cagataatcc cgatacatag gatgtgcaca attatcaatg atagtgcggg
     1141 cgcgttgaag cggggaaaga ccgcgcagat cggcgatccc ttgttcggtg atgatcactt
     1201 tgacgctgtg ttcgctgtga tcaacatggc tgcacattgg cacgacggtt gagatcttgc
     1261 cttctttagc aatcgacgga gccataaaga tcgacagata cgcgttgcgt tcaaaatcac
     1321 cgctgccgcc gatgccgttc atcagatcga ccccggctac gtgcgttgaa tttgcatgcc
     1381 cgtaaatatc aaactccagg ccgacgttca gagcgatgac gcccagacga cggatgattt
     1441 ccgggttatt ggaaatctcc tgcggacgca acacaatgcg gctggcaaag taatccatat
     1501 tgtcgtaaat cttgcgcagg gaatcggccg agattgtcag gctggaggcg ctggccccgc
     1561 tgattttgtc ggtttccagt aaatgcacca ccgattcctg tagcacttcc gaatacatca
     1621 tgaacggagg aatttccggg ttttccccca gacgcgccat taccgcatta ttgatattgc
     1681 ccacgccact ttgcagcggc agaaattccg gcggaatacg cccatgcgcc atttcctgca
     1741 ataagaacgt gaccacgtta tcggcaatct gctggcacat gggattttgc ttatccagca
     1801 tattaccggc gtcgggcaag ttggtttcca cgacggcgac aatctttttc ggatcgattt
     1861 gcacatagcg ggtaccgacg cgatccattg catggaagat cgacacgcta ttgcgccgcg
     1921 gtggcgcgcc aggaatcaca atatctgcca gttctgcaac gcgcggatcg tgatagtgat
     1981 taagttcaat gatcactttc ttcgctcgca gcagccaggt cggcgcatta ccgatcccgc
     2041 tggttaacca gactcgacca tccggtgcca gtgccgatgc ttcaatgacg gcaacatcaa
     2101 tgtcgccgaa gaaaccgtaa ttgaccattt gcgccacttc gctcaaatgc aggtcaacga
     2161 aactcaccgc gccctgattg atctttttac gtaaaccgga cgatgtttga tatggcgcac
     2221 gccaggaaac agcatcggcg tcagaaagta catcgtcagc ggcggcgctg attgacgccc
     2281 ccgtcagcag gcgaatttga tacggctttt tggcctcatg ctgttcgtta gctctgcggg
     2341 caatcgcggt gggtagggct ttcggcgaac ccgccggggt aaagccgcta aatgccacca
     2401 tgtcgttatg ctggataatt tctgccgctt catcggcggt catccttgtc cactgagttt
     2461 ccatttttac tccttcgttc gcagggatta atgaccaacg aaattaggtt tacgtttttc
     2521 gaggaaagcg ttcattcctt cctggtaatc ttcgctgtca taaaccgcgc gtcgcatccc
     2581 ctgaatacgt tcaaattcat cggagttcat ggtgtgcgct tcgcccagta cacgcagctc
     2641 ttctttgata acagcaatgg ctaacggcgc tttctcagag atgtggtgcg ccatttgtaa
     2701 ggtgaaatct tccagttctt ccacttccac aacatggttg aggatgccga cagccagcgc
     2761 gcgctgggcg gtgattggcg aagcggtaaa aatcagctct ttgacaatgt ggaagcccgc
     2821 gtcgcgggtc aggttgtgaa tgccgaccag gttatacggg acgccgaggt ttacaggcgt
     2881 cattgagaag gttgaggtac tggcggcgat gatcagatcg gaactcatga tcatttcaaa
     2941 tgcgccaccc caaacactac cttccaccat cgaaatgatc ggtttcggga atttttggat
     3001 catgcgggtg atttgacgca atggatcatc ataggagagc ggatcgcgac cgccagacgg
     3061 cagttcgtga atatcgtgac ctgcggagaa gactttggat ccactcggcg cgcgcaaaat
     3121 gatacagcga atttccggcc ggttgagatc gcttaacgcc tgcataagat catcaataaa
     3181 gactttactt aaggcattaa gttttcggcc atagttaaac tcaatgaccg ccactttgtt
     3241 gatagtggca acgttcacat actgataaga cataaaaatt cctttaatca aaatattgcg
     3301 tctggataaa ttcactgagc tgccgcaggc cggtgcgcgg tgagagcgta ttgtttttga
     3361 ccgctaaaag cgtctggcgg taatagcgat cgaaatcttc attcgcgaac aggtgattca
     3421 gtacttcttc ttcggtctgc ttacgcagcc attccaccga ttgttgttgc cgcacttgtt
     3481 gtaaacgacc actggcagtt agcgcggttt tgaactcgat gatggcgtgc cagatctcat
     3541 cgattccacg tttttccagt gcgctacaag tcagaacccg tggctgccat tcgtcgtatt
     3601 tacgtcgcag aatatgcagg gcactctcgt acatatgccg ggcaatggcg acattggtat
     3661 ggttatcgcc atcgtctttg ttgataacga tcagatcagc cacttccatc agcccttttt
     3721 taatgccctg cagatcatcg ccgccaccgg caatttgcaa cgagataaaa cagtccacca
     3781 tgcgggcgac ttctgtttcc gactgcccga cgccaaccgt ttcgacaatc actacgtcat
     3841 aacccgccgc ttcgcataac agcattaatt cccgcgctcg ctgactggca ccgcccagat
     3901 gaccggagga tggtaccggg cgaataaacg ccgcttcggc acgcgccagg tcattcatgc
     3961 ggattttatc cccgagaatg ctaccgccag tgaccgggct gctgggatcg accgcaataa
     4021 ccgcgacctt taatccctct cgaatcaaca acatgccaaa ggcctcaaga aaggtacttt
     4081 tccccgcgct gggggtgccg gtaacgccca gtcgcagggt gttaccgcag tacggcataa
     4141 tggcatcaag cagctgcgta cttagtgcct gatgacgcgg gtgacggctt tccaccagcg
     4201 tcatggcctg ggcgagtgtg gcacgctcac cctgacgtaa gcggcgaata ctttctgcca
     4261 gcgtggcttc attaatcatg atgctggctt atcagattca gtacgtcgcg cacactgtcg
     4321 agcataggtg tacctggacc ataaatcgcc gccacgccgc gctcttgcag gaaggcgtaa
     4381 tcctgcggtg gaatgacgcc accggcgact acgcagatat cttcgcgtcc ccattttttc
     4441 agcgcctcga ccagttccgg gatcagcgtt ttatgaccgg cagccagtga ggatgcgccc
     4501 actacgtgaa cgtcattttc tactgccagg cgggcgatct cttcaggtgt agagaacatc
     4561 gggcttaaat ctacgtcgaa accgagatcg gaataggcgc tggcgatcac tttcgagccg
     4621 cgatcgtgcc catcctggcc cattttggcg atcagaatgc gcaggcgacg accattgtcg
     4681 gcaaggaact gctccgtttg cgcaacaatg gcatcgaact cggaggccga tttctcagat
     4741 tgatgatagc tttgcgcaat cacgccggta acacactggc ttggcaccag ataacggtcg
     4801 aaagcggctt ccagcgcatc ggaaatttca cccagggtgg cgcgaacgcg agcggcatta
     4861 acagcggcag ccagcaggtt ttcgttatgc tgtgcggcgt gagtcagggc gttcaacgcg
     4921 gcggttacgg cggcatcatc acgggtggcg cgaatgcgtt ccagcgaagc aatttgctcg
     4981 ttacgcacca tcacgttgtc gatctcaagt acatcggttt cgtcttcgtg atccagtttg
     5041 tacttgttga caccaacgat gacacgtttg ccctggtcga taagcgactg ttcgcgcgct
     5101 gaggcctatt cgatcattcg ttttggcaga cctgcttcga tcgctttcgc cataccaccg
     5161 gcttcgtcga tctgttggat aatagctctg gcttgtttga cgatttgatc ggtcagcgac
     5221 tcaatgtaat aggatccggc cagtggatcg acggtgcggc agagttctga ttcttcctgg
     5281 atgatgatct gggtgttgcg ggcaatgcgt gctgagaaat cggtaggcaa accaagcgct
     5341 tcgtcaaagg cgttggtatg cagtgactga gtaccgccca gcgtcgcagc cagtgcttca
     5401 atggtggtgc ggataacgtt gttatacgga tcctgttcag tcaggctcca gcctgaggtc
     5461 tggcagtggg tacgcagcgc cagtgatttc gggtcctgtg cgccaaatcc actgaccgct
     5521 tcgctccatc aataacgtgc cgcacgcaac atggcgacgt tcataaacag atccatgccg
     5581 atgccgaaga agaacgacag gcgaggagcg aagtcatcaa ttttcagtcc ggcagagatt
     5641 gctgctttga tgtactcaat cccatcagcg agcgtaaatg ctacctgctg cacgcagttg
     5701 gcacccgctt cacccatgtg gtaaccgctg atactgatgg tattaaatcg cggcatgttg
     5761 ccggaacacc aggcgatgat gtcggcgata atgcgcattg acggttttgg cgggtaaata
     5821 taggtgttgc ggcagaggta ctctttgagg atatcgttct gaatggtgcc ggtcagttta
     5881 tcaggtgtaa caccttgctc ttccgcggcg acgatataaa acgccagtac tggtagcact
     5941 gcgccattca tggtcatcga aaccgacatt ttatccagcg ggatctggtc gaacaggact
     6001 ttcatatctt ccacggtgtc gatagcgacg cccgctttgc cgacgtcgcc cgccacgcgc
     6061 gggttatcgg agtcgtagcc tcggtgggtg gcaaggtcaa acgcaacgga aagacctttt
     6121 tgcccggcgg ccaggttacg gcgataaaaa gcgttggact cttttgctgt tgaaaaacca
     6181 gcatactgac ggatggtcca cggttgggcg gtatacatag tggcacgcgg gccacgaacg
     6241 tagggcggca aaccaggaag ggtacctgtc acctccagat tatcgagatc ggcttcggta
     6301 tacagcggct tgatggtgat cccttccgcg gtttgctgaa ccagcgagtc gacagttttc
     6361 tcccgacggc tcaattcctt gttggcaagc tgttgccact cctgcacgtt agacattatt
     6421 tgctccgtaa aacgcaatca aaatgagggt atttgcgcct acggtgagct ttttacgtgg
     6481 gtttgtcgcc agcaaaaaaa atgcattcag acgtcgtttt ttgccgcctg agatttgtct
     6541 attttgtgat gtgattcaag gaatacaaaa agaagtgagg acaacgcctg atatgtgcta
     6601 tcaggcatta tttgatggat taatcctgac gaaggacttt gtgaccataa tcgagcaacg
     6661 catcagtgac tttacgcatc atgcggcttt caggagcaaa gcggtgccag tagagcatcc
     6721 ggcgttgaaa tagccctggc gttaagtcaa tcagttcacc gctggctagt tctttctcga
     6781 tttgcaggtg cgggatcata cagcaggtgg tgccctggcg agcaagttgc acgaacgctt
     6841 ctgaagaatt aacgatatgg cagggcacgc tgcctggagg cagatcgaag ttttgctgca
     6901 aaaaggcctg gtgcatatcg tcaagatggt caaaggcgac cacaggtgct ttcaataatg
     6961 ccgaacgcgt tacgccgtta gggaaatatt tttcggcaaa cggttttgag ctgacgaaca
     7021 gatagtcaag cgcaccgagc ttatcgacaa ggcaactcgg cagcgcctga tgttgaatac
     7081 tcaccgcgcc gaccacttcg ccgcggcgca gacgttcctg agtacgggtt tcatcttcta
     7141 cctgcaagtt gaggcggata ggcgaatcag ccaatacagg agccagtgcc ggaagcaacc
     7201 acgtcgccag actgtcggcg ttgaccgcca gtgaaagcag cagcggagtc gaaccggttt
     7261 gttcatcgcc cagccactct tcttccagca actccacctg gcgcagcagt gccagcagtt
     7321 tttgcccttg ttccgtcggg cgcggcggta cggtacgcac caacagcggc tgcccgaaca
     7381 tattttccag ttgcttaatg cgctgtgaga cggctgattg tgtaatgcac agcttttgtg
     7441 ccgcgcgctc aaatcctcgt tcacgtatca ccgcatccag tgcctgtaat gttctgtagt
     7501 ccgggcgttt cattgctgtt gtctgctcct ggtaaatgct ttttcctgca ctatgacaca
     7561 attttgtgtc aggttgcata taccgcagcc gtcggcgggt aacatttgta tcaatggtta
     7621 aacgcgcagc ttaaaagatc agggatttgc gctattgcat ttcgcttagc gacttcgcgc
     7681 cctggttatg ttgaatggcg tggcgttatt gcctctgttc gcaccgtgga gcggcatacc
     7741 cagaccgttg tatgctttat ttgcggggcg aaaggggatg cccgccattg cgcgatattt
     7801 tatggatgag ttaaccaccc ggcttgccaa cggggtctga atcgcttttt ttgtatataa
     7861 tgcgtgtgaa atttcatacc acaggcgaaa cgatcatgac gcaggatgaa ttgaaaaaag
     7921 cagtaggatg ggcggcactt cagtatgttc agcccggcac cattgttggt gtaggtacag
     7981 gttccaccgc cgcacacttt attgacgcgc tcggcacgat gaaaggccag attgaagggg
     8041 ccgtttccag ttcagatgct tccactgaaa aactgaaaag cctcggcatt cacgtttttg
     8101 atctcaacga agtcgacagc cttggcatct acgttgatgg cgcagatgaa atcaacggcc
     8161 acatgcaaat gatcaaaggc ggcggcgcgg cgctgacccg tgaaaaaatc attgcttcgg
     8221 ttgcggaaaa atttatctgt attgccgacg cctccaagca ggttgatatt ctgggtaaat
     8281 tcccgctgcc agtagaagtt atcccgatgg cacgtagtgc agtggcgcgc cagctggtga
     8341 aactgggcgg tcgtccggaa taccgtcagg gcgtggtgac cgataatggc aacgtgatcc
     8401 tcgacgtcca cggcatggaa atccttgacc cgatagcgat ggaaaacgcc ataaatgcga
     8461 ttcctggcgt ggtgactgtt ggcttgtttg ctaaccgtgg cgcggacgtt gcgctgattg
     8521 gcacacctga cggtgtcaaa accattgtga aatgatctga cgggggaacc tcccccgtta
     8581 aaaaaattct cttcattaaa tttggtgaca tgtgtcacgt ttttacctgg ctattgtcga
     8641 ttgctctaaa taaatcctct aaaccagcat attcaaccaa gaaatacctt tgcgtgatat
     8701 ttcctcaaca tcgcgacgca aacgttcata ttgccgcaat attatttttt gatatgttga
     8761 aaggcggatg caaatccgca cacaacattt caaagacagg attgggtaaa tggcaaaggt
     8821 atcgctggag aaagacaaga ttaagtttct gctggtagaa ggcgtgcacc aaaaggcgct
     8881 ggaaagcctt cgtgcagctg gttacaccaa catcgaattt cacaaaggcg cgctggatga
     8941 tgaacaatta aaagaatcca tccgcgatgc ccacttcatc ggcctgcgat cccgtaccca
     9001 tctgactgaa gacgtgatca acgccgcaga aaagctggtc gctattggct gtttctgtat
     9061 aggaacaaac caggttgatc tggatgcggc ggcaaagcgc gggatcccgg tatttaacgc
     9121 accgttctca aatacgcgct ctgttgcgga gctggtgatt ggcgaactgc tgctgctatt
     9181 gcgcggcgtg ccggaagcca atgctaaagc gcaccgtggc gtgtggaaca aactggcggc
     9241 gggttctttt gaagcgcgcg gcaaaaagct gggtatcatc ggctacggtc atattggtac
     9301 gcaattgggc attctggctg aatcgctggg aatgtatgtt tacttttatg atattgaaaa
     9361 taaactgccg ctgggcaacg ccactcaggt acagcatctt tctgacctgc tgaatatgag
     9421 cgatgtggtg agtctgcatg taccagagaa tccgtccacc aaaaatatga tgggcgcgaa
     9481 agaaatttca ctaatgaagc ccggctcgct gctgattaat gcttcgcgcg gtactgtggt
     9541 ggatattccg gcgctgtgtg atgcgctggc gagcaaacat ctggcggggg cggcaatcga
     9601 cgtattcccg acggaaccgg cgaccaatag cgatccattt acctctccac tgtgtgaatt
     9661 cgacaacgta cttctgacgc cacacattgg cggttcgact caggaagcgc aggagaatat
     9721 cggcctggaa gttgcgggta aattgatcaa gtattctgac aatggctcaa cgctctctgc
     9781 ggtgaacttc ccggaagtct cgctgccact gcatggtggt cgtcgtctga tgcacatcca
     9841 cgaaaaccgt ccgggcgtgc taactgcgct gaacaaaatc ttcgccgagc agggcgtcaa
     9901 catcgccgcg caatatctac aaacttccgc ccagatgggt tatgtagtta ttgatattga
     9961 agctgacgaa gacgttgccg aaaaagcgct gcaggcaatg aaagctattc cgggtaccat
    10021 tcgcgcccgt ctgctgtact aattcccctt ctctgaaaat taacgggcag gtcactgact
    10081 tgcccgtttt tttatccctt ctccacaccg ttgccgcgtt gcgcattcta ctttgcgagt
    10141 ctgctccaga aaataaatca aagtcagatc aatgcgttgt gtttatttaa tggggattta
    10201 cgatggcggg acagtatggg gctgtaacgg taaagccctc accgaagcga gggcttaaag
    10261 gagaagggtt atgatgcgac ttgtcatcat actgattgta ctgttactga taagtttcgg
    10321 agcttattaa cagtcagtct ctggggagga gtcatcctcc cttaccctta ctcactaaat
    10381 taggtcaaag aatcaacgat gtcaatcagg gcgatgcggg gtgcatcgcc ctgaaccgaa
    10441 ctttttgata gccacttcat cgcccacgtt tactgccgta atagatcctt tttcccaaaa
    10501 attatctctg ttttgcatgg ggtttttcga acacgctcga agaaaagatt taaaggtaga
    10561 tcaatgcgtt gtggttattt aaagagagct tacgatagct gggcagcatg gggctgtaac
    10621 ggtaaagccc tcaccgaagc gagggcttga aggagaaggg ttatgatgcg acttgccatc
    10681 atactgattg tactgttact cataagtttc ccagcttatt aacagtcagt cacaggggag
    10741 gagcaatcct cccttaccct tactcactaa attaggttaa agaatcaacg atgtcaatca
    10801 gggcgatgca ggtgtatcgc ccttaccact cccagacttt cgacggtgta accaccgcag
    10861 gaagagggat atcccactct tcaacgggga gtttttccac caactgacaa tcatgcgcat
    10921 aacccaccgg ttgcgtttta tagtgctgcc agttttgtaa ggtccgatca taaaaaccac
    10981 cgcccattcc caggcgctga ccgtactcat caaaggcgac cagcggtgtg atcagcacgt
    11041 ctaatcggga aaggggtagc acgtcacgca catccagttt tggctcatgg attttcaacc
    11101 tgttcatcac cagttcgctt tgcggatggt aattcaggaa cagcaaatta ccagcactaa
    11161 agggatgcaa aactggaaga tatacgcgct taccggcgcg ccagagttgt tctattagcg
    11221 gctgggtgtc gagttcacca tcaaaagaga ggaatacagc gaccgtatgc gccatcacca
    11281 ccgggggata agtcatcatc cgggtagcgg cttgttgacc catttcctgc tgttgttccg
    11341 gcgttaacgc acgacgacgt tgccgaatca ttttgcggat ttcttgtcgg gataatgtca
    11401 gtgggagttc tggtagttgc gtcatggctg gtgccagata agaagggaat ctccgagatg
    11461 ccgccgcagg ctgtaaccct tgaacccttg gttcaaggtg aatgtgtcgt cgcagtttta
    11521 aggcttctcg gacggaccga gcatgctcac caaccgcgga gcgccacatt cttgtggtat
    11581 gaaatatcgg ctcaggggac tggcccgctt gcgaacatct cagagaaatt ttgtcttcac
    11641 ggttactcta ccacagtaaa ccgaaaagtg tcattcaaag ttttggttag ttttttcggt
    11701 gatgcgacct tgttcaagta acgcttgttc tatggtctgc tgcagcatcc gaatacgctg
    11761 ttccatactt gccgcgtagt cacgagtctt cgctttttct tgcgctaact catagctgat
    11821 attcaatgcg gcaatgaaga ccaactgttc agtatttgtg actctagtgc gttctttcag
    11881 atcttgcaac cgttggttca gatcgtccgc tgcctgattc aacgcatccc tttggtcagg
    11941 cgggcagttc acacgcagtg aacggccaaa aatttggata tcgacgggtt gtgcagacat
    12001 gccaccttcc tgctgattga ctgcgctgcc ttcgtcttta gacccatggt ctgcgaaggg
    12061 gcgacactat agctaccctg atgagaagag acaagccctt ttctggtcca ccagggccca
    12121 aagtggtagc atatcatgaa tattcctccc tttgacgacg aatgcttatg tctatacaga
    12181 acgaaatgcc tggttacaac gaaatgaacc agtatctgaa ccaacaaggg acgggtctga
    12241 cccctgccga gatgcatggt ttaatcagtg ggatgatatg tggcggtaac gatgacagct
    12301 catggctgcc gctacttcac gacctgacga acgaaggcat ggctttcggt catgagctgg
    12361 cacaggcact gcgtaaaatg cactctgcca ccagcgatgc cctgcaggat gacggcttcc
    12421 tttttcagct ttatctgcct gatggcgatg atgtcagcgt tttcgatcgg gctgatgcat
    12481 tggcaggttg ggtcaatcac ttcctgcttg gtcttggcgt tacgcaaccg aagctggata
    12541 aagtgaccgg cgaaaccggt gaagctatcg acgatctgcg taacattgcg caactgggtt
    12601 acgacgaaga cgaagatcag gaagagcttg aaatgtcgct tgaagagatc atcgaatacg
    12661 ttcgtgttgc cgcgctgtta tgccacgaca cctttactca tccgcaaccg accgcgccag
    12721 aagtacaaaa accgactcta cactaaaaac aaaaaacgta aggagagtgt tatgagtgag
    12781 atatcccggc aagagtttca gcgtcgccgt caggccctgg tggagcaaat gcaacccggc
    12841 agcgccgcgc tgatttttgc tgcaccagaa gtaacacgta gcgccgacag cgaatacccc
    12901 tatcgtcaga acagtgactt ctggtacttc accggcttta acgaaccgga agcggtgctg
    12961 gtgctgatta aaagcgatga cactcataac cacagcgttc tgtttaaccg cgttcgcgac
    13021 ctgacggcgg agatctggtt tggccgtcgc ttaggccagg atgccgcgcc agagaaactg
    13081 ggcgttgacc gcgcactggc attcagcgaa atcaatcagc aactttatca actacttaac
    13141 ggcctggatg tggtttacca tgcccagggc gaatatgcat atgctgatga aatcatgaac
    13201 agtgcgctgg aaaaactgcg taaaggttcg cggcaaaatc tcaccgcacc ggcaacgatg
    13261 atcgactggc gtcctgttgt tcatgaaatg cgcctgttca aatcgccaga agagattgcc
    13321 gtactccgcc gcgcgggaga aatcaccgcc atggcacata cacgggcgat ggaaaaatgc
    13381 cgtccgggaa tgttcgagta ccatctggaa ggcgaaattc accacgaatt taaccgccac
    13441 agtgcgcgct atccgtccta taacaccatt gtcggcagcg gtgaaaacgg ctgcattctg
    13501 cactacaccg aaaacgagag tgaactgcgc gacggtgacc tggtgttgat tgacgcgggt
    13561 tgtgaataca aaggttacgc gggcgatatt acccgcacct tcccggtcaa cggcaaattc
    13621 acccaggccc agcgtgaaat ctacgacatt gtgctggagt ctctcgaaac cagcctgcgc
    13681 ctgtatcgtc cgggaacttc cattctggaa gtcactggtg aagtggtgcg catcatggtt
    13741 agcggcctgg taaaactcgg cattctgaaa ggtgatgttg atgaactgat cgctcagaat
    13801 gcccatcgtc ctttctttat gcatggcctt agccactggt tagggctaga tgtccatgac
    13861 gttggcgttt atggtcagga tcgctcgcgc attctggaac cgggcatggt actgaccgta
    13921 gagccagggc tgtatattgc gccggatgca gaagtgccag aacaatatcg cggtatcggc
    13981 attcgtattg aagacgacat tgtgattacc gaaaccggta acgaaaacct caccgccagc
    14041 gtggtgaaaa agccggaaga aatcgaagcg ttgatggctg ctgcgagaaa gcaatgagcg
    14101 taatcatcgt cggtggcggc atggcgggcg cgacgctggc gctggctatt tcccggttaa
    14161 gtcacggggc gctgccggta catttgattg aagcgactgc gccagagtca catgctcatc
    14221 cgggctttga tggacgagcg atagcgctgg cggcgggtac ctgtcagcaa ctggcgcgca
    14281 tcggcgtctg gcaatctctg gcggattgcg caactgccat caccaccgtg catgtcagcg
    14341 atcgtggtca cgctggattt gtcaccctcg ccgcagaaga ttaccaactg gcggcgctgg
    14401 gacaggttgt cgaattgcac aatgtcgggc aacggctgtt tgcattgctg cgtaaagcac
    14461 ctggcgtaac gctgcattgc cctgatcgcg tggctaacgt tgcccgtact cagagtcacg
    14521 ttgaagtgac gctggaaagt ggcgagacgc tgacgggccg cgtgctggta gcagctgatg
    14581 gcacccattc agcgttagcc accgcgtgcg gcgttgactg gcagcaggag ccttacgaac
    14641 aactggccgt gattgccaac gttgcgactt ccgttgcgca cgaaggccgc gcttttgaac
    14701 gcttcacgca acatggcccg ctggcgatgt tgccgatgtc tgacggacgc tgttcgctgg
    14761 tctggtgtca tccactggaa cggcgcgaag aggtgctgtc gtggagcgac gagaagtttt
    14821 gccgtgaact ccagtcggcc tttggctggc gacttggaaa aattacccac gccggtaaac
    14881 gcagtgctta tccgctggcg ttaacccgcg ccgccagagc tattacccat cgtaccgtgc
    14941 tggtgggcaa tgcggcgcaa actctgcacc cgattgccgg gcaagggttt aacctcggta
    15001 tgcgagatgt catgagcctt gcggaaaccc tgactcaggc gcatgagcgc ggagaagaca
    15061 tcggtgatta cggcatattg tgccgctatc agcagcgtcg acagagcgat cgcgaagcaa
    15121 ccatcggcgt cacggacagc ctggtacatc tttttgccaa ccgttgggca ccgctggttg
    15181 tcgggcgcaa catcggactg atgacgatgg aattattcac cccggcacgc gatgtgctgg
    15241 cgcagcgcac cctcggttgg gtggcgcgtt gaaggcggtt ttaaggaata aacaatgcaa
    15301 tgtgttgatg tagccattgt tggtggcggc atggtggggc tggcggttgc ctgcggctta
    15361 caggggagcg gcttacgcgt tgccgtactg gagcagcgcg taccggaacc tctggcggcg
    15421 gatgcaccac cacaactgcg cgtttcggct atcaatgccg ccagcgaaaa attactcacc
    15481 cgtcttggcg tctggcagga cattctctct cgtagggcca gttgttatca cggtatggaa
    15541 gtgtgggaca aagacagttt tggtcacatt tcgtttgacg atcaaagcat gggctatagc
    15601 catcttgggc atatcgttga aaactcagtg attcactacg cgctgtggaa caaagcgcag
    15661 cagtcgtcag atatcactct gttggccccc gcagaattac agcaggtcgc ctggggagaa
    15721 aatgaaactt tcctgacgct gaaagatggc agcatgttaa cggcgcgtct ggtgattggc
    15781 gcggacggtg ctaattcctg gttgcgcaac aaagcagata tttcgctgac tttctgggat
    15841 tatcagcatc acgcgctggt agcgaccatt cgcacggaag aaccgcatga tgcggtggcg
    15901 cggcaggttt tccatggcga aggcattctg gcctttttac cgcttagcga tccgcatctt
    15961 tgctcaattg tctggtcact gtcgccagag gaagcgcagc ggatgcagca ggcaagtgaa
    16021 gatgaattta atcgcgcgtt aaatatcgct tttgataatc gcctgggctt atgcaaggtt
    16081 gagagcgcgc gtcaggtgtt cccactgacg gggcgttatg cgcgccagtt tgccgcgcac
    16141 cgtctggtgc tagtgggcga cgccgcgcat accattcacc cgctggcggg gcagggagta
    16201 aatctcggct ttatggatgc tgcagagctg attgctgaac tgaaacggtt gcatcgtcag
    16261 gggaaagaca tcgggcagta catttacctg cgccggtatg agcgtagccg caagcacagt
    16321 gcggcgctga tgctggctgg tatgcaggga ttccgcgatc tgttttccgg taccaatccg
    16381 gcgaaaaaac tgctgcgtga tattggtttg aaactggccg acacgcttcc tggcgttaaa
    16441 ccacaactta tccgccaggc aatgggatta aacgatttgc ctgaatggct gcgttaaaaa
    16501 tttctcttct gctgtttatt tgatacccat cacactttca tctcccggtt ttttcgccgg
    16561 gagattttcc tcatttgaaa taaactaatt tcacctccgt tttcgcatta tattttctaa
    16621 tgtcattatt ttttgattta gtgttttttg acattttttt agctcttaat attgccttat
    16681 tcaaattagc tttctaatgg catcatcttt atatagaaac tggtgtgttt tttggttttt
    16741 tattctgtcg cgattttggc gttttttaac cataagctaa tgtgatgatc aattttacct
    16801 tatggttaac agtctgtttc ggtggtaagt tcaggcaaaa gagaacgatt gcgttgggga
    16861 ccgggagtgg ctccgatgct gggtttcgtg gtgataattt caccatgaaa agttgtcagc
    16921 cccgcttatt caatgaggac aagatggcac aacagactcc tttgtacgaa caacacacgc
    16981 tttgcggcgc tcgcatggtg gatttccacg gctggatgat gccgctgcat tacggttcgc
    17041 aaatcgacga acatcatgcg gtacgtaccg atgccggaat gtttgatgtg tcacatatga
    17101 ccatcgtcga tctccgcggc agccgcaccc gggagtttct gcgttatctg ctggcgaacg
    17161 atgtggcgaa gctcaccaaa agcggcaaag ccctttactc ggggatgttg aatgcctctg
    17221 gcggtgtgat agatgacctc atcgtctact actttactga agatttcttc cgcctcgttg
    17281 ttaactccgc cacccgcgaa aaagacctct cctggattac ccaacacgct gaacctttcg
    17341 gcatcgaaat taccgttcgt gatgaccttt ccatgattgc cgtgcaaggg ccgaatgcgc
    17401 aggcaaaagc tgccacactg tttaatgacg cccagcgtca ggcggtggaa gggatgaaac
    17461 cgttctttgg cgtgcaggcg ggcgatctgt ttattgccac cactggttat accggtgaag
    17521 cgggctatga aattgcgctg cccaatgaaa aagcggccga tttctggcgt gcgctggtgg
    17581 aagcgggtgt taagccatgt ggcttgggcg cgcgtgacac gctgcgtctg gaagcgggca
    17641 tgaatcttta tggtcaggag atggacgaaa ctatttctcc tttagccgcc aacatgggct
    17701 ggactatcgc ctgggaaccg gcagatcgtg actttatcgg tcgtgaagcc ctggaagtgc
    17761 agcgtgagca tggtacagaa aaactggttg gtctggtgat gaccgaaaaa ggcgtgctgc
    17821 gtaatgaact gccggtacgc tttaccgatg cgcagggcaa ccagcatgaa ggcattatca
    17881 ccagcggtac tttctccccg acgctgggtt acagcattgc gctggcgcgc gtgccggaag
    17941 gtattggcga aacggcgatt gtgcaaattc gcaaccgtga aatgccggtt aaagtgacaa
    18001 aacctgtttt tgtgcgtaac ggcaaagccg tcgcgtgatt tacttttttg gagattgatt
    18061 gatgagcaac gtaccagcag aactgaaata cagcaaagaa cacgaatggc tgcgtaaaga
    18121 agccgacggc acttacaccg ttggtattac cgaacatgct caggagctgt taggcgatat
    18181 ggtgtttgtt gacctgccgg aagtgggcgc aacggttagc gcgggcgatg actgcgcggt
    18241 tgccgaatca gtaaaagcgg cgtcagacat ttatgcgcca gtaagcggtg aaatcgtggc
    18301 ggtaaacgac gcactgagcg attccccgga actggtgaac agcgaaccgt atgcaggtgg
    18361 ctggatcttt aaaatcaaag ccagcgatga aagcgaactg gaatcactgc tggatgcgac
    18421 cgcatacgaa gcattgttag aagacgagta acggctttat tcctcttctg cgggagagga
    18481 tcagggtgag gaaaatttat gcctcaccct cactctcttc gtaaggagag aggttcacaa
    18541 ttcactgcac gtttcaggaa ccatcgctca tgacacagac gttaagccag cttgaaaaca
    18601 gcggcgcttt tattgaacgc catatcggac cggacgccgc gcaacagcaa gaaatgctga
    18661 atgccgttgg cgcacaatcg ttaaacgcgc tgaccggcca gattgtaccg aaagatattc
    18721 agcttgcgac cccgccgcag gttggcgcac cggcgaccga atacgccgca ctggcagaac
    18781 tcaaggctat tgccagtcgc aataaacgct tcacgtctta catcggcatg ggttacaccg
    18841 ccgtgcagct accgccggtt atcctgcgta acatgctgga aaatccgggc tggtataccg
    18901 cgtacactcc gtatcaacct gaagtctccc agggccgcct tgaagcactg ctcaacttcc
    18961 agcaggtaac gctggatttg actggactgg atatggcctc tgcttctctt ctggacgagg
    19021 ccaccgctgc cgccgaagca atggcgatgg cgaaacgcgt cagcaaactg aaaaatgcca
    19081 accgcttctt cgtggcttcc gatgtgcatc cgcaaacgct ggatgtggtc cgtactcgtg
    19141 ccgaaacctt tggttttgaa gtgattgtcg atgacgcgca aaaagtgctc gaccatcagg
    19201 acgtcttcgg cgtgctgtta cagcaggtag gcactaccgg tgaaattcac gactacactg
    19261 cgcttattag cgaactgaaa tcacgcaaaa ttgtggtcag cgttgccgcc gatattatgg
    19321 cgctggtgct gttaactgcg ccgggtaaac agggcgcgga tattgttttt ggttcggcgc
    19381 aacgcttcgg cgtgccgatg ggctacggtg gcccacacgc ggcattcttt gcggcgaaag
    19441 atgaatacaa acgctcaatg ccgggccgta ttatcggtgt atcgaaagat gcagctggca
    19501 ataccgcgct gcgcatggcg atgcagactc gcgagcaaca tatccgccgt gagaaagcga
    19561 actccaacat ttgtacttcc caggtactgc tggcaaacat cgccagcctg tatgccgttt
    19621 atcacggccc ggttggcctg aaacgtatcg ctaaccgcat tcaccgtttg accgatatcc
    19681 tggcggcagg cctgcaacaa aaaggtctga agctgcgcca tgcgcactat ttcgacactc
    19741 tgtgtgtgga agtggccgac aaggcgggcg tactggcgcg tgccgaagcg gctgaaatca
    19801 acctgcgtag cgatatcctg aacgcggttg ggatcaccct tgatgaaacc accacgcgtg
    19861 aaaacgtaat gcagcttttc agcgtgctgc tgggcgataa ccacgggctg gagatcgaca
    19921 cgctggacaa agacgtggct cacgacagcc gctctattca gcctgcgatg ctgcgcgacg
    19981 acgaaatcct cactcatccg gtgtttaatc gctaccacag cgaaaccgaa atgatgcgct
    20041 atatgcactc gctggagcgt aaagatctgg cgctgaatca ggcgatgatc ccgctgggtt
    20101 cctgcaccat gaaactgaac gccgccgccg agatgatccc aatcacctgg ccggaatttg
    20161 ccgaactgca cccgttttgc ccgccggaac aggctgaagg ttatcagcag atgattgcgc
    20221 agctggctga ctggctggtg aaactgaccg gttacgacgc cgtttgtatg cagccgaact
    20281 ccggcgcaca gggcgaatac gcgggcctgc tggcgattcg tcattatcat gaaagccgca
    20341 acgaagggca tcgcgatatc tgcctgatcc cggcttctgc gcacggaact aaccccgctt
    20401 ctgcacatat ggcaggaatg caggtggtgg ttgtggcgtg tgataaaaac ggcaacatcg
    20461 atctgactga tctgcgcgcg aaagcggaac aggcgggcga taacctctcc tgtatcatgg
    20521 tgacttatcc ctctacccac ggcgtgtatg aagaaacgat ccgtgaagtg tgtgaagtcg
    20581 tgcatcagtt cggcggtcag gtttaccttg atggcgcgaa catgaacgcc caggttggca
    20641 tcacctcgcc gggctttatt ggcgcggacg tttcgcacct caacctgcat aaaactttct
    20701 gcattccgca cggcggtggt ggtccgggta tgggaccgat cggtgtgaaa gcgcatctgg
    20761 caccgtttgt accgggtcat agcgtggtgc aaatcgaagg catgttaacc cgtcagggcg
    20821 cagtttctgc ggcaccgttc ggtagcgcct ctatcctgcc aatcagctgg atgtacatcc
    20881 gcatgatggg cgcagaaggg ctgaaaaaag caagccaggt ggcaatcctc aacgccaact
    20941 atattgccag ccgcctgcag gatgccttcc cggtgctgta taccggtcgc gacggtcgcg
    21001 tggcgcacga atgtattctc gatattcgcc cgctgaaaga agaaaccagc atcagcgagc
    21061 tggatattgc caagcgcctg atcgactacg gtttccacgc gccgacgatg tcgttcccgg
    21121 tggcgggtac gctgatggtt gaaccgactg aatctgaaag caaagtggaa ctggatcgct
    21181 ttatcgacgc gatgctggct atccgcgcag aaattgacca ggtgaaagcc ggtgtctggc
    21241 cgctggaaga taacccgctg gtgaacgcgc cgcacattca gagcgaactg gtcgccgagt
    21301 gggcgcatcc gtacagccat gaagttgcgg tattcccggc aggcgtggca gacaaatact
    21361 ggccgacggt gaaacgtctg gatgatgttt acggcgaccg taacctgttc tgctcctgcg
    21421 taccgattag cgaataccag taattcactg attcgactat tttctaaagg cgcttcggcg
    21481 cctttttagt cagatgacaa agtacaaaag tgctcagaca gtcccctcgc ccctttgggg
    21541 agagggttag ggtgagggga acaggccggc actggcgcga atatttaccc tcaccccggc
    21601 cctctccctg aaagggcgag gggaaaagcg tgccaacatt gaagattgag ccagtttgtt
    21661 agcaatctca aagatacgtc aacgaattaa tttttctcgg aaaaacaaat ggctatagca
    21721 cttgtgaccg gtggcagtcg cggcatcggg cgggcaactg cattactgtt ggcgaaagaa
    21781 gagtatacgg tggcggttaa ttatcaacaa aacctccatg cggcgcagga agtggtgaac
    21841 ttaatcacgc aagccggtgg caaggcattc gtgctccagg cggatatcag cgacgaaaat
    21901 caggtcatcg caatgtttac agcaatcgat cagcacgatg aaccgctagc agcgctggtc
    21961 aataacgccg ggatcttgtt tacccagtgc accgttgaaa accttaccgc agagcgaatc
    22021 aaccgagtac tttccaccaa cgtgacggga tattttctct gctgccgcga ggcggtaaaa
    22081 cgcatggcgc ttaaaaatgg tggcagtggc ggcgctatcg tcaatgtctc ttcggtggcc
    22141 tcacggttgg gttcgccagg ggaataggtt gattacgcgg catcgaaagg ggcgattgat
    22201 acgttaacca ccggactatc gctggaagtc gccgcgcagg ggatccgcgt taactgcgtg
    22261 cggccagggt ttatttatac cgaaatgcac gccagcggcg gcgagcttgg acgcgtcgat
    22321 cgcgttaagt cgaacatccc catgcagcgt ggtggacagg cagaagaggt cgcgcaggcc
    22381 attgtctggc tactaagtga taaagcctct tacgtcacgg gaagttttat cgatttggcg
    22441 ggcgggaaat aaaacaggga agttgtctga ccggatgcaa caagtattgc atccggtact
    22501 tcatcgactt aaagcttctc gccgttgctg gcaatcacct ctttgtacca gttaaagctc
    22561 ttcttacgtg aacgcgacat atcgccagta ccgtcgtcat gtttattcac atagataaag
    22621 ccgtagcgtt tgctgtactg cccggtagtg aatgacacgc agtcgatgca gccccacggt
    22681 gtgtagccca tcagatccac accatcgtaa gtcactgctt ttttcatctc ttcaatatgg
    22741 gcgcgcaggt agtcaatgcg gtagtcgtcg ttgatgctgc catcttcttc cactttgtcg
    22801 taagcgccaa aaccgttttc gacaataaac agcggcctct gataacgctc atacagttcg
    22861 caaagggcat agcgcagacc tactggatca atctgccagc accagtcaga cgctttaaca
    22921 tacgggttcg gtacgctgcc ttcaaaacca gagatcgcat cgccggtgcc gccttcggcc
    22981 ttcactgcgt tgatcatgta atagctgaaa ccaagataat cgcaggtgcc ttcacgcagt
    23041 acatccagat cgccatcttc cattttgatg ttaaatccgc gacgctccca ctcgttcaac
    23101 acataggacg ggtaatagcc gcgtagctgc acatcggtaa agacgtagcg ttcgcgcatc
    23161 gactcctgag cgaacatcac atcgtccggg ttacaggagt aaggatagag cggcaccatc
    23221 gccagcatac agccgacttt catctccggg ttaatgcgac gcgcggcttt cactgctagg
    23281 gcgctggcga caaactggtg atgcagcacc tggtacatcg tctcttccgg gttgtcatgc
    23341 tcggtataca ccacgccgga gcagcagtaa ccaaacagcg gcgcacgcca gttacgctgg
    23401 ttgtttattt cgttgaaggt catccagtat ttgactttat gcttgtagcg ttcgaatacc
    23461 acttccgcga aacggacaaa gaaatcaacg actttacggt tggtccagct accgtattgc
    23521 tgcaccagat gcagcggtat ttcaaagtgg gagagggtta tcaccggttc gatgttgtat
    23581 ttcagcagtt catcgaacag agagtcgtaa aacttcagcc cttcttcgtt tggctgagct
    23641 tcatcacctt ttggaaaaat acgcgtccag gcgatggaag tccgaaaaca tttgaagccc
    23701 atttcggcaa atagcttgat gtcttccttg tagtgaccat aaaaatcaac ggcttcatgg
    23761 tttggatagt attttcctgg caagacttct ttggtgattt cgcgcggcac gccgtgtgcg
    23821 ccaccggtca gaacgtcaca aatgctcggt cctttgccgc ctttgttcca gccgccttcg
    23881 acctgatgag cggcaacggc gccaccccat aagaaatctt tcggtaaggt gagttttttc
    23941 actatcatag gctccagatg agtcaattct tacaggaaat agtaccatgc agccaaacga
    24001 catcactttt tctcaacgtt tccaggatga cattctggct gggcgtaaaa ccatcaccat
    24061 ccgcgacgag tctgaatcgc acttcaaaac gggtgatgtg cttcgtgtcg gacgttttga
    24121 agatgacggt tatttttgca cgattgaagt caccgcaacc tcaaccgtaa cgctggatac
    24181 gctgacggaa aaacatgcag agcaggaaaa tatgaccctg actgaactga taaaggtcat
    24241 tgccgacatc tatcccggtc agacacagtt ttatgtgatt gaatttaaat gtctttaaat
    24301 tgaactcacg cctgttagtt gaaatttctc atttaatttc atgattttta ggagattagt
    24361 ctcaaatcag aatttatttt agctaacagg tattcactgg aactattctc agttacgctg
    24421 gagaggtata catgtgcgtg tacgtttctc cggagtaagt tatggttcag aagcccctca
    24481 ttaagcaggg atattcgctg gcagaggaaa ttgccaacag cgtcagtcac ggcattgggt
    24541 tggtgtttgg tatcgttggg ctggtgttgc tactggttca ggcggtggat ctcaatgcca
    24601 gcgccacagc gataaccagc tacagcctct atggcggcag tatgatcctg ctgttcctcg
    24661 cttcgacgct ctatcacgcc attcctcatc aacgggcaaa aatgtggctg aagaaatttg
    24721 accattgcgc tatttacctg ttgattgccg gaacctacac gccgtttttg ctggtggggc
    24781 tggattctcc gttagcgcgc gggttgatga ttgttatctg gagcctggca ttgctgggga
    24841 ttctgtttaa actgaccatc gcgcaccgat tcaaaatttt atctctggtg acctatctgg
    24901 cgatgggctg gctgtcgctg gtggtaattt atgaaatggc agttaagctc gcggcgggca
    24961 gcgttacctt actggcggta ggcggcgtgg tttattcgct cggagtgatt ttctatgtct
    25021 gcaaacgcat tccctacaat catgccatct ggcacggctt cgtgctcggc ggcagtatgt
    25081 gccactttct ggcgatctat ttgtatattg ggcaggcgta atgggtatgc ctttgtaggc
    25141 ctgataagac gcgccagcgt cgcatcaggc gataaatgcc tgatgcgata cagagattta
    25201 ctcttcgagt gaatacggca gcggctcgat atgcagtgta ttcgcatcgt cgcgtacgcg
    25261 gaagatgctg tccggttcca tatcgttatt catgacgacc tgtaccacga cctgaccatc
    25321 ttccagtttt accgcagcca gcaccgtacc ggtacgacgc cagttctcgc ccattttcag
    25381 ctctaagtct tcaccagctt ccggcagtcg gctggcgcta cctgccagca accagagcgc
    25441 acgtttattg gcaccacgga attttgctcg cgccaccatc tcttgtccgg tataacagcc
    25501 tttcttaaaa ctgataccgc ccagcgcctg gagattggtc gcctgtggga taaactgccc
    25561 gctgttcgcg gcatcaatca ccgggaaacc cgcttcaatg tttaatgcca gccactgttg
    25621 gctattgttc agttccgctt caccgcgcag tttatcggtc agcatattgg cagtagcttc
    25681 atcggttacg atcaggaaac gttctgccgg gtgttcaaac catagcaaag tggtcgcgcc
    25741 ttctttaact acctgttttt ctctcgaagg tagttcacta aagagattgg cgagcgcggc
    25801 gcgcgcctga aaaccggcaa caccaagcag cacacgctcg tcgtctgccg cgatggtcac
    25861 tttagagaac accgcatatt ttttcagttc agtcagctgc ggttcacgca cgctgcgccg
    25921 ttcaatccac gcaaagccat cgccgtcgcg gaacagacgt aaattgctcc acattttacc
    25981 tttggcgtcg caatgggcgg cgagcaggtg ctgattttct gtcatctggc tgacatctgc
    26041 tgtcacctga ccctgcatat atttttcgct gtccgcgcca gtaatggtgg caagcgccca
    26101 gtcatcaagc gtcatcagcg tcagcggtaa acgggcagaa gccgtaggct gacggggagg
    26161 aaaaggtgta aaagccataa tagagtcctg agttgcttaa cggcgtatta ataactaatg
    26221 gtaaaagagc tatgaggcaa tgcaagtgct ttcactacgc gatctgtgcc ttctgcgagg
    26281 cgacttccaa aaaaatgaag ctcttgaatt gttgtgaatt aatttcgcga tcgcgatggt
    26341 gtttactgat attcccgtaa aagaagtcga aaaacacgtt acaatagccg ggtactggat
    26401 tttcgtgaga caggaagaag atggacatta acaacaaagc ccgcattcat tgggcatgcc
    26461 gccgtggtat gcgcgaactc gatatttcaa tcatgccgtt tttcgaacat gagtacgaca
    26521 gcttaagcga tgacgaaaaa cgcatcttta ttcgtctgct ggaatgtgac gatccggacc
    26581 tgtttaactg gctgatgaat cacggtaaac cggccgatgc agaactggaa atgatggtcc
    26641 gactcatcca gacacggaac cgggaacgtg gtcctgtggc aatctgattt gcgcgtctcc
    26701 tggcgcgcac agtggctttc cttgctgatt catgggctgg ttgccgctgt tattttactc
    26761 atgccctggc cgctcagtta caccccgtta tggatggtgt tactttcgct ggtggtattt
    26821 gattgcgttc gcagccagcg gcgtattaat gctcgccagg gggaaattcg attgttgatg
    26881 gacgggcgtt tgcgttggca agggcaggag tggagcatcg tcaaagcacc gtggatgatt
    26941 aagagcggca tgatgctgcg tttacgttct gatggcggta aacggcaaca tttatggctg
    27001 gcagccgaca gcatggacga agctgaatgg cgggatttac ggcggatttt gttgcaacaa
    27061 gagacgcaaa gataaatatg acggcaaagc atatgcgcta agccgtcagt gagatcaggc
    27121 gtaatgctct gccatttcgt tgaggatttg ctcgcaccag ctctgaatac gctcgtcgct
    27181 aaggtcatac tggttagttt catccagcgc cagacccacg aacagttgcc cgtcagcaat
    27241 caccggtttc gggctggtaa attcatatcc ttccgttggc cagtagccga cgaacttcac
    27301 gcctttggtc gagagtttgt catgcagcat accgagcgca tcgaggaacc actcgccgta
    27361 tcccagttga tcgccaagcc catacagcgc aacaatttta ccttcaaggt tcaggtcgtc
    27421 gagctgatcc cagacggctt cccagtcttc ctggatttcg ccaaaatccc aggtcgggat
    27481 acccagaatg agcacatcgt actgctccat taatttcggg gagtcgtcct tgaggttatg
    27541 taaggtcacc agttctgggc cgataatatc gcggattttt tctgccgcca tttcggtgta
    27601 acaggtgctg gaaccgtaaa aaagacccat attcataacg taagcttctc gattctgctg
    27661 tggcttttgc ggctagtgta tcagaatcgc tttagtcacg gcacaataag gcataatgga
    27721 tcaaatgagt gaccataagg ggcgcaagtg aaacaggatc tggcacgcat cgagcagttt
    27781 cttgatgctc tgtggctgga aaaaaatctg gctgaaaata cgttgaacgc ttaccgtcgc
    27841 gatctgtcaa tgatggtgga gtggttgcat caccgcgggt tgacgctggc gacggcgcaa
    27901 agtgacgatt tgcaggcatt actggcagaa cggctagagg gcgggtataa agccaccagc
    27961 tcagcgcgtt tgctgagtgc agtgcgccga ttgttccagt atctttatcg cgaaaagttt
    28021 cgtgaagacg atcccagtgc gcatctcgct tcaccgaaat tgccacagcg tttgccaaaa
    28081 gatttaagcg aagcgcaggt cgaacgttta ttacaggcac cattaattga tcagccactg
    28141 gagctacgcg ataaagccat gcttgaagtg ttgtatgcta ccgggctgcg tgtctctgaa
    28201 ctggtcgggc tgacaatgag tgatatcagc ctacgtcagg gcgtagtgcg ggtcattggt
    28261 aaaggcaaca aagagcgcct ggtgccgtta ggtgaagagg ccgtttactg gctggaaacc
    28321 tatctggaac atgggcgtcc gtggctgttg aatggtgtgt caattgacgt gttgtttccc
    28381 agccagcgtg cgcagcagat gacgcgacag accttctggc accgcattaa acattatgcc
    28441 gtgctggcgg gtatcgacag cgaaaagctg tcaccgcatg tgttgcgtca cgcttttgcc
    28501 actcatttat taaatcatgg tgcggattta cgcgtggtgc agatgctact gggccacagc
    28561 gatctctcca ccacgcaaat ttatacgcat gtcgctaccg agcgtctgcg gcaacttcat
    28621 caacagcatc acccgcgggc gtgatgtctg aaaagaacgg gaagatttat gaagaaaggt
    28681 tttatgttgt ttactttgtt agcggcgttt tcaggctttg ctcaggctga tgacgcggca
    28741 attcaacaaa cgttagccaa aatgggcatt aaaagcagcg atattcagcc agcacccgtg
    28801 gctggcatga agactgtgct gactaacagc ggtgtgttgt acatcaccga tgacggtaaa
    28861 catatcattc aggggccaat gtatgacgtt agtggcgcgg ctccggtcaa tgtcaccaat
    28921 aaaatgctgc taaagcagtt gaatgcgctt gaaaaagaga tgatcgttta taaagcgccg
    28981 caggaaaaac acgtcatcac cgtgtttact gatattacct gtgggtactg ccacaaactg
    29041 catgagcaaa tggcagacta caacgcgctg gggatcaccg tgcgttatct tgctttcccg
    29101 cgccaggggc tggagagcca ggctgagcaa caaatgaaag ccatctggtg tgcgaaagat
    29161 aaaaacaaag cgtttgatga tgtgatggct ggtaaagctg ccactccggc aagttgcgat
    29221 atcgatattg ccgatcatta cgcacttggc gtccagcttg gcgttagcgg cactccggca
    29281 attgtgctga gcaatggcac acttgttccg ggttaccagc cgccgaaaga gatgaaagaa
    29341 ttcctcgacg aacaccaaaa aatgaccagc ggtaattaat tcgcgtgaaa caacagatac
    29401 aacttcgtcg ccgtgaagtc gatgaaacgg cagacttgcc cgctgaattg cctcccttgc
    29461 tgcgccgttt atacgccagc cggggagtac gcagtgcgca agaactggaa cgcagtgtta
    29521 aaggtatgtt gccctggcag caactaagcg gtgtcgaaaa ggccgttgag atcctttaca
    29581 acgcttttcg cgaaggaacg cggattattg tggtcggtga tttcgacgcc gacggcgcga
    29641 ccagcacggc tctaagcgtg ctggcgatgc gctcgcttgg ttgcagcaat atcgactacc
    29701 tggtaccaaa ccgtttcgaa gacggttacg gcttaagccc ggaagtggtc gatcaggccc
    29761 atgcccgtgg cgcgcagtta attgtcacgg tggataacgg tatttcctcc catgcggggg
    29821 ttgaacacgc tcgctcgttg ggcattccgg ttattgttac cgatcaccat ttgccaggcg
    29881 aaacattacc cgcggcggaa gcgatcatta accctaactt gcgcgactgt aatttcccgt
    29941 cgaaatcact ggcaggcgtg ggtgtggcgt tttatctgat gctggcgctg cgcacctttt
    30001 tgcgcgatca gggctggttt gatgagcgcg gcatcgcaat tcctaacctg gcagaactgc
    30061 tggatctggt cgcgctgggg acagtggcgg acgtcgtgcc gctggacgct aataatcgca
    30121 ttctgacctg gcaggggatg agtcgcatcc gtgccggaaa gtgccgtcca gggattaaag
    30181 cgctgctgga agtggcaaac cgtgatgcac aaaaactcgc cgccagcgat ttaggttttg
    30241 cgctggggcc acgtctcaat gctgccgggc gactggacga tatgtccgtc ggtgtggcgc
    30301 tgttgctgtg cgacaacatc ggcgaagcgc gcgtgctggc aaatgaactc gatgcgctaa
    30361 atcagacgcg aaaagagatc gaacaaggaa tgcagattga agccttgacc ctgtgcgaga
    30421 aactggagcg aagtcgcgac acgctacccg gcgggctggc aatgtatcac cccgaatggc
    30481 atcagggcgt tgtcggtatt ctggcttcgc gcatcaaaga gcgttttcac cgtccggtta
    30541 tcgcctttgc gccagcaggt gatggtacgc tgaaaggttc cggtcgctcc attcaggggc
    30601 tgcatatgcg tgatgcgctg gagcgattag acacactcta ccccggtatg atgctgaagt
    30661 ttggcggtca tgcgatggcg gcgggtttgt cgctggaaga ggataaattc gaactctttc
    30721 aacaacggtt tggcgagctg gttaccgagt ggctggaccc ttcgctattg caaggcgaag
    30781 tggtgtcaga cggcccgtta agcccggccg aaatgaccat ggaagtggcg cagctgctgc
    30841 gcgatgctgg cccgtggggg cagatgttcc cggagccgct gtttgatggt catttccgtc
    30901 tgctgcaaca gcggctggtg ggcgaacgtc atttgaaagt catggtcgaa ccggtcggcg
    30961 gcggtccgct gctggatggt attgctttta atgtcgatac cgccctctgg ccggataacg
    31021 gcgtgcgcga agtgcaactg gcttacaagc tcgatatcaa cgagtttcgc ggcaaccgca
    31081 gcctgcaaat tatcatcgac aatatctggc caatttagcg tcatcttctc tataaaaaag
    31141 agcgtggatt gggtacaatc ccgctcttat caccgcattt tgactagctc aataaaagaa
    31201 atcagaccat gtttgaaatt aatccggtaa ataatcgcat tcaggacctc acggaacgct
    31261 ccgacgttct tagggggtat ctttgactac gacgccaaga aagagcgtct ggaagaagta
    31321 aacgccgagc tggaacagcc ggatgtctgg aacgaacccg aacgcgcaca ggcgctgggt
    31381 aaagagcgtt cctccctcga agccgttgtc gacaccctcg accaaatgaa acaggggctg
    31441 gaagatgttt ctggtctgct ggaactggct gtagaagctg acgacgaaga aacctttaac
    31501 gaagccgttg ctgaactcga cgccctggaa gaaaaactgg cgcagcttga gttccgccgt
    31561 atgttctctg gcgaatatga cagcgccgac tgctacctcg atattcaggc ggggtctggc
    31621 ggtacggaag cacaggactg ggcgagcatg cttgagcgta tgtatttgcg ctgggcagaa
    31681 tcgcgtggtt tcaaaactga aatcatcgaa gagtcggaag gtgaagtggc gggtattaaa
    31741 tccgtgacga tcaaaatctc cggcgattac gcttacggct ggctgcgtac agaaactggc
    31801 gttcaccgcc tggtgcgtaa gagcccgttt gactccggcg gtcgtcgcca cacgtcgttc
    31861 agctccgcgt ttgtttatcc ggaagttgat gatgatattg atatcgaaat caacccggcg
    31921 gatctgcgca ttgacgttta tcgcgcgtcc ggcgcgggcg gtcagcacgt taaccgtacc
    31981 gaatctgcgg tgcgtattac ccacatcccg accgggatcg tgacccagtg ccagaacgac
    32041 cgttcccagc acaagaataa agaccaggcc atgaagcaga tgaaagcgaa gctttatgaa
    32101 ctggagatgc agaagaaaaa tgctgagaaa caggcgatgg aagataacaa atccgacatc
    32161 ggctggggca gccagattcg ttcttatgtc cttgatgact cccgcattaa agatctgcgc
    32221 accggggttg aaacccgcaa tacgcaggcc gtgctggacg gcagcctgga tcaatttatc
    32281 gaagcaagtt tgaaagcagg gttatgagga accaacatgt ctgaacaaca cgcacagggc
    32341 gctgacgcgg tagtcgatct taacaatgaa ctgaaaacgc gtcgtgagaa gctggcgaac
    32401 ctgcgtgagc agggaattgc cttcccgaac gatttccgtc gcgatcatac ctctgaccaa
    32461 ttgcacgcag aattcgacgg taaagagaac gaagaactgg aagcgctgaa catcgaagtc
    32521 gccgttgctg gccgcatgat gacccgccgt attatgggta aagcctcttt tgttaccctg
    32581 caggacgttg gcggtcgtat tcagctgtac gttgcccgtg acgatcttcc ggaaggcgtt
    32641 tacaacgagc agttcaaaaa atgggatctc ggcgacatcc tcggcgcgaa aggtaaactg
    32701 ttcaaaacca aaaccggcga actgtctatc cactgcaccg agctgcgtct gctgaccaaa
    32761 gcactgcgtc cgctgccgga caaattccac ggcttgcagg atcaggaagc gcgctatcgt
    32821 cagcgttatc tggatctcat ctctaacgat gaatcccgca acacctttaa agtgcgttcg
    32881 cagatcctct ctggcattcg ccagttcatg gtaaatcgcg gctttatgga agttgaaacg
    32941 ccgatgatgc aggtgatccc aggcggtgcc gctgcgcgtc cgtttatcac ccatcataac
    33001 gcgctggatc ttgacatgta cctgcgtatc gcgccggaac tgtacctcaa gcgtctggtg
    33061 gtcggtggct tcgagcgtgt attcgaaatc aaccgtaact tccgtaacga aggtatttcc
    33121 gtacgtcata acccagagtt caccatgatg gaactctata tggcttacgc agattacaaa
    33181 gatctgatcg agctgaccga atcgctgttc cgtactctgg cacaggatat tctcggtaag
    33241 acggaagtca cctacggcga cgtgacgctg gacttcggta aaccgttcga aaaactgacc
    33301 atgcgtgaag cgatcaagaa atatcgcccg gaaaccgaca tggcggatct ggacaacttc
    33361 gactctgcaa aagcgattgc tgaatctatc ggcatccacg ttgagaagag ctggggtctg
    33421 ggccgtatcg ttaccgagat cttcgaagaa gtggcagaag cacatctgat tcagccgacc
    33481 ttcattacta aatatccggc agaagtttct ccgctggcgc gtcgtaacga cattaacccg
    33541 gaaatcacag accgctttga gttcttcatc ggtggtcgtg aaatcggtaa cggctttagc
    33601 gagctgaatg acgcggaaga tcaggcgcag cgcttcctgg atcaggttgc cgcgaaagac
    33661 gcaggtgacg acgaagcgat gttctacgac gaagattacg tcaccgcact ggaacacggc
    33721 ttaccgccga cagcaggtct gggaattggt atcgaccgta tggtaatgct gttcaccaac
    33781 agccatacca tccgcgacgt tattctgttc ccggcgatgc gtccagtaaa ataagcatta
    33841 cgttatgcta ataaccccgg caaatgtcgg ggttttttaa ttgtgctgcg cgaaagcaga
    33901 caacaatttt cttgcttcac tattggctgc ctgcattacc atccacggac tgaacgccca
    33961 cggcgtggca tcaataccgt gtaatacatc tgctaaatca caccattgat aatccatcac
    34021 ttcatcatcg ttgatctgta acgcactgtt ggtgcgtgcg gcaaataccg gacacacttc
    34081 attttccaca atgccattcg gatcggtggc gcgatagcga aagtcaggat agatagattc
    34141 aggaggcgta atttccacgc caagctcata acggcaacgg cggatcactg cgtcttcgtt
    34201 gctttctccc agttgtgggt gcccacaaac cgagttagtc cacacgccag gccatgcttt
    34261 tttgctcagt gcgcggcggg taactaataa ttgccccttg gcattaaaca gccaactgga
    34321 gaacgcgaga tgtaagaggg tgtctgccgt gtgtgcggca tacttttcca gcgtacccgt
    34381 gggaactccc tgtgcattca ataaaatgac gtgttccgtt tgcataattt ctcacatgta
    34441 attctgatca ctcatcatta tagataattg aagagtgaaa tgattaacca agtgagcgtt
    34501 tatcgacaac cgcccgtttt gagcggatgc cgacaggtaa aaaccattta aaaaagtagc
    34561 atcatatatt tgaagcgact ttcaatggcc attgcaacac agtcagaaat gacaggaata
    34621 gagagagtaa aaagcaacag cagactgaat atagcgcgca ttaaaagatt tatattattc
    34681 tccatgctca tttttcttca gcttgcgcat cagaagccac atacgtactg tcctgacttt
    34741 taaatcttta tcagagacgg attccttcac caggtcagca tgatgctgat agccattaaa
    34801 gaagacgttc agcacaacgg cgctaagggt tgcgagcata atgccgctat gtagcagcgg
    34861 ttgcagtacg gccggtaact tagaaaagaa atcgtgagag agcgtcggag tcatgccaac
    34921 gccgagactg atcgccacaa tatagaggtt gtaacggttg gtggtgtagt tacagcgcga
    34981 cagaattcga atccctgtcg ccagtaccat gccgaacatc actagaccag cgccgcccag
    35041 cacaaattgc ggaatggagg ctaccagcac cgccattttt ggcaccatgc caaacaggat
    35101 taatataatt cccgaagaaa tacacaccca gcggctatga acgcgcgtca cgctaaccag
    35161 gccaacgttt tgagaaaatg acgtgtgggg gaagctgtta aacgtgccgc ctatcattgt
    35221 ccctacgcca tcgacacgca gcccgcgaat aatatcgtgt gaagagagtt tacgaccgac
    35281 tatttcaccc agtgccagga acatccccat cgactcgata aacacgatga ttaacacggc
    35341 agtcatggtc agaatggaaa cgggatcgaa aatcggcata ccaaacgaca tcggggtgac
    35401 aatcgcaaac cacaaggcat catgtagccc ggataaattg acttcattca tcatccacga
    35461 aagtaaaaag ccaaatacaa tccccagtaa tacggcgacg ttggacataa atcctttcgc
    35521 atagcgagta atgagcaaga taaaaattaa gacggcaaag gagatacctg aataaacggg
    35581 attaccatat tgcggattcc ctttacctcc ggcggcccag tcaataccca cctgaatgat
    35641 gctaagtccg acagaagtaa taaccacacc ggtaaccagt ggcgggaata aaggcatcaa
    35701 gcgaccgata agtggcgcta ataatgtggt gataaaaccc gcggcgatag tggcaccaaa
    35761 tatccccagc aggccaatat ccgggttcat cccaatggct atcattggtg ttacagcagc
    35821 aaaggtcacc gacataatca ccggcaggcg gatccccata aagcggccga taccgataca
    35881 ttgcaataat gtgacgatcc cgcagcaaaa gagatccgag ctaatgagca tcgcaatagc
    35941 ttcttttgag aggcccagtc ggtcaccaat cataagagga acagcgactg cacctgcgta
    36001 catgacaagg acgtgttgca gaccgagtat gatcagcttt cctggtgata atatgcggtc
    36061 aacctcatca gttgggcggt cttgcccaga agatgagaga agttgggaat ctatggcgct
    36121 catcagtgtt tctcctttcg cccgccagag taaaaagcaa ccgtttacgt taatgaaact
    36181 gtctaaacac atgctcgtgg agtgccagtt tttgcgagga aggggagtta gagacaggaa
    36241 ttgcggaggc aatcacataa tcgtggttaa accacgaaaa tgagaagaga acctgacaat
    36301 ggaattatct gtaattttct catattgata tttcattaat cattctggca tgtcgtactc
    36361 tcgcatttaa tcgtttttat ctggatagca ctcttttgat cggcaatgtt gaaataatga
    36421 aagcggcata gattgagggg caataatttg aactcagtcg caaaattata attaaaacgg
    36481 tcatgctacc taatatatgc ccgtt
//
LOCUS       DADMJB010000020        36166 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.020, whole genome shotgun sequence.
ACCESSION   DADMJB010000020 DADMJB010000000
VERSION     DADMJB010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 36166)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36166)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36166
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.020"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(50..1699)
                     /gene="actP"
                     /locus_tag="JN078_000911"
     CDS             complement(50..1699)
                     /gene="actP"
                     /locus_tag="JN078_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation/acetate symporter ActP"
                     /protein_id="HAY9040194.1"
                     /translation="MKRVLTALAATLPFAANAADAISGAVERQPTNWQAIIMFLIFVV
                     FTLGITYWASKRVRSRSDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVFTSGYD
                     GLIYSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQGPIRILSACGSLVVVAL
                     YLIAQMVGAGKLIELLFGLNYHIAVVLVGVLMMMYVLFGGMLATTWVQIIKAVLLLFG
                     ASFMAFMVMKHVGFSFNNLFSEAMAVHPKGVDIMKPGGLVKDPISALSLGLGLMFGTA
                     GLPHILMRFFTVSDAREARKSVFYATGFMGYFYILTFIIGFGAIMLVGANPEYKDAAG
                     HLIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYANVF
                     KKGATEREELRVSKITVLILGVIAIILGMLFENQNIAFMVGLAFAIAASCNFPIILLS
                     MYWSKLTTRGTMLGGWLGLITAVVLMILGPTIWVQILGHEKAIFPYEYPALFSISVAF
                     LGIWFFSATDNSAEGARERELFRAQFIRSQTGFGVEQGRAH"
     gene            complement(1696..2010)
                     /locus_tag="JN078_000912"
     CDS             complement(1696..2010)
                     /locus_tag="JN078_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF485 domain-containing protein"
                     /protein_id="HAY9040195.1"
                     /translation="MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLI
                     AFAPGWLGTPLNPNTSVTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNEVLHEVQ
                     AS"
     gene            complement(2142..4101)
                     /gene="acs"
                     /locus_tag="JN078_000913"
                     /pseudo
     CDS             complement(2142..4101)
                     /gene="acs"
                     /locus_tag="JN078_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006816721.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
     gene            4494..5930
                     /gene="nrfA"
                     /locus_tag="JN078_000914"
     CDS             4494..5930
                     /gene="nrfA"
                     /locus_tag="JN078_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming nitrite reductase cytochrome
                     c552 subunit"
                     /protein_id="HAY9040196.1"
                     /translation="MTRIKINARRIFSLLIPFFFFTSVHAEQTAAPAKPVTVEAKNET
                     FAPQHPDQYLSWKATSEQSERVDALAEDPRLVILWAGYPFSRDYNKPRGHAFAVTDVR
                     ETLRTGAPKNAEDGPLPMACWSCKSPDVARLIQKDGEDGYFHGKWARGGPEIVNNLGC
                     ADCHNTASPEFAKGKPELTLSRPYAARAMEAIGKPFEKAGRFDQQSMVCGQCHVEYYF
                     DGKNKAVKFPWDDGMKVENMEQYYDKIAFSDWTNSLSKTPMLKAQHPEYETWTAGIHG
                     KNNVTCIDCHMPKVQNAEGKLYTDHKIGNPFDNFAQTCANCHTQDKAALQKVVAERKQ
                     SINDLKIKVEDQLVHAHFEAKAALDAGATEAEMKPIQDDIRHAQWRWDLAIASHGIHM
                     HAPEEGLRMLGTAMDKAADARTKLARLLATKGITHEIQIPDISTKEKAQQAIGLNMEQ
                     IKAEKQDFIKTVIPQWEEQARKNGLLSQ"
     gene            5975..6541
                     /gene="nrfB"
                     /locus_tag="JN078_000915"
     CDS             5975..6541
                     /gene="nrfB"
                     /locus_tag="JN078_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418495.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase pentaheme
                     subunit"
                     /protein_id="HAY9040197.1"
                     /translation="MSVLRSLLTAGVLASGLLWSLNGITATPAAQASGDRYEVTQQRN
                     PDAACLDCHKPDTEGMHGKHASVINPNNKLPVTCTNCHGQPSPQHREGVKDVMRFNEP
                     MYKVGEQNSVCMSCHLPEQLQKAFWPHDVHVTKVACASCHSLHPQQDTMQTLSDKGRI
                     KICVDCHSDQRTNPNFNPASVPLLKEQP"
     gene            6538..7209
                     /gene="nrfC"
                     /locus_tag="JN078_000916"
     CDS             6538..7209
                     /gene="nrfC"
                     /locus_tag="JN078_000916"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase Fe-S protein"
                     /protein_id="HAY9040198.1"
                     /translation="MTWSRRQFLTGVGVLAAVSGTAGRVVAKTLNINGVRYGMVHDES
                     LCIGCTACMDACREVNKVPEGVSRLTIIRSEPQGEFPDVKYRFFRKSCQHCDHAPCVD
                     VCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTKTADKCDFCRKTNL
                     QAGKLPACVEACPTKALTFGNLDDPNSEISQLLRQKPTYRYKLALGTKPKLYRVPFKY
                     GEVSQ"
     gene            7206..8162
                     /gene="nrfD"
                     /locus_tag="JN078_000917"
     CDS             7206..8162
                     /gene="nrfD"
                     /locus_tag="JN078_000917"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase subunit NrfD"
                     /protein_id="HAY9040199.1"
                     /translation="MTQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQ
                     AGGADSTLLRTTLIVGPGAVILGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFQ
                     LYMVVLVLWLAKIFEHDLLAQQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLG
                     AYTGFLLSALKSYPFLNNPILPVLFLFSGISSGAAVALIAMAIRQRSNPHSTEAHFVH
                     RMEIPVVWGEIFLLVAFFVGLALGDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPM
                     LLKSWVNRSSGIPAVLAACGASLVGVLMLRFFILYAGQLTVA"
     gene            8182..9900
                     /locus_tag="JN078_000918"
     CDS             8182..9900
                     /locus_tag="JN078_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014640253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HAY9040200.1"
                     /translation="MDVFLPEVGFLALLLSLGVNVLTPLTAFAGVRLRWPAMMRLTCI
                     GILAQCALLLLAFGVLTYCFLISDFSVIYVAQHSYSLLSWELKLAAVWGGHEGSLLLW
                     VLLLSAWSALFAWHYRQQTDPLFPLTLAVLSLMLAALLLFVVLWSDPFVRIFPPAIEG
                     RDLNPMLQHPGLIFHPPLLYLGYGGLMVAASVALASLLRGEFDAASARICWRWALPGW
                     SALTAGIILGSWWAYCELGWGGWWFWDPVENASLLPWLSATALLHSLSLTRQRGIFRH
                     WSLLLAIVTLMLSLLGTLIVRSGILVSVHAFALDNVRAVPLFSLFALISLASLALYGW
                     RARDGGPAVRFSGLSREMLILATLLLFCAVLLIVLVGTLYPMIYGLLGWGRLSVGAPY
                     FNRATLPFGLLMLVVIVLATFVSGKRVQLPALVAHAGVLLFAAGIVVSSVSRQEISLN
                     LQPGQQVTLAGYTFRFERLDLQAKGNYTSEKAIVALFDHQQRIGELMPERRFYEARRQ
                     QMMEPSIRWNGIHDWYVVMGEKTGADRYAFRLYVQSGVRWIWGGGLLMIAGALLSGWR
                     GRKRDE"
     gene            9893..10276
                     /gene="nrfF"
                     /locus_tag="JN078_000919"
     CDS             9893..10276
                     /gene="nrfF"
                     /locus_tag="JN078_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfF"
                     /protein_id="HAY9040201.1"
                     /translation="MNKGLLTLLLLFTCFARAQVVDTWQFANPQQQQQALNIASQLRC
                     PQCQNQNLLESNAPVAVSMRHQVYSMVAEGKNEVEIIGWMTERYGDFVRYNPPLTGQT
                     LVLWALPVVLLLLMALILWRVRAKR"
     gene            10273..10869
                     /gene="nrfG"
                     /locus_tag="JN078_000920"
     CDS             10273..10869
                     /gene="nrfG"
                     /locus_tag="JN078_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfG"
                     /protein_id="HAY9040202.1"
                     /translation="MKEPKIPVKMLTTLTILMVFLCVGSYLLSPKWQAVHAEYQRQRD
                     PLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL
                     RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANY
                     AQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSD"
     gene            11210..12523
                     /gene="gltP"
                     /locus_tag="JN078_000921"
     CDS             11210..12523
                     /gene="gltP"
                     /locus_tag="JN078_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate:proton symporter GltP"
                     /protein_id="HAY9040203.1"
                     /translation="MKNIKFSLAWQILFAMVLGILLGSYLHYHSDSRDWLVVNLLSPA
                     GDIFIHLIKMIVVPIVISTLVVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITL
                     ANVFQPGAGVDMSQLATVDISKYQSTTEAVQSSSHGIMGTILSLVPTNIVASMAKGEM
                     LPIIFFSVLFGLGLSSLPATHREPLVTVFRSISETMFKVTHMVMRYAPVGVFALIAVT
                     VANFGFSSLWPLAKLVLLVHFAILFFALVVLGIVARLCGLSVWILIRILKDELILAYS
                     TASSESVLPRIIEKMEAYGAPASITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGID
                     LSIWQEIILVLTLMVTSKGIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRILDMA
                     RTALNVVGNALAVLVIAKWEHKFDRKKALAYEREVLGKFDKTADQ"
     gene            complement(12714..13345)
                     /locus_tag="JN078_000922"
                     /pseudo
     CDS             complement(12714..13345)
                     /locus_tag="JN078_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313087.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
     gene            complement(13439..15586)
                     /gene="fdhF"
                     /locus_tag="JN078_000923"
     CDS             complement(13439..15586)
                     /gene="fdhF"
                     /locus_tag="JN078_000923"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(15167..15169),aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HAY9040204.1"
                     /translation="MKKVVTVCPYCASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLK
                     GYYGWDFINDTQILTPRLKTPMIRRQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDA
                     IQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVUHGPSVAGLHQSVGNGAMSNA
                     INEIDNTDLVFVFGYNPADSHPIMANHVINAKRNGAKIIVCDPRKIETARIADMHIAL
                     KNGSNIALLNAMGHVIIEENLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSAS
                     EIRQAARMYAQAKSAAILWGMGVTQFYQGVETVRSLTSLAMLTGNLGKPHAGVNPVRG
                     QNNVQGACDMGALPDTYPGYQYVKDPANREKFAKAWGVESLPAHTGYRISELPHRAAH
                     GEVRAAYIMGEDPLQTDAELSAVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGE
                     HEGVFTAADRGFQRFFKAVEPKWDLKTDWQIISEIATRMGYPMHYNNTQEIWDELRHL
                     CPDFYGATYEKMGEQGFIQWPCRDTSDADQGTSYLFKEKFDTPNGLAQFFTCDWVAPI
                     DKLTDEYPMVLSTVREVGHYSCRSMTGNCAALAALADEPGYAQINTEDAKRLGIEDEA
                     LVWVHSRKGKIITRAQVSDRPNKGAIYMTYQWWIGSCNELVTENLSPITKTPEYKYCA
                     VRVEPIADQRAAEQYVIDEYNKLKTRLREAALA"
     gene            complement(15784..17250)
                     /gene="mdtP"
                     /locus_tag="JN078_000924"
     CDS             complement(15784..17250)
                     /gene="mdtP"
                     /locus_tag="JN078_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit MdtP"
                     /protein_id="HAY9040205.1"
                     /translation="MINRQLSRLLLCSILGSTTLISGCALVRKDSAPHQQLKPEQIKL
                     ADDIHLASSGWPQAQWWKQLNDPQLDALIQRTLSGSHTLAEAKLREEKAQSQADLLDA
                     GSQLQVAALGMLNRQRVSANGFLSPYAMDAPSLGMDGPYYTEATVGLFAGLDLDLWGV
                     HRSAVAAAIGAHNAALAETAAVELSLTTGVAQLYYSMQASYQMLDLLEQTRDVIDYAV
                     KAHQSKVAHGLEAQVPFHGARAQILAVDKQIAAVKGQITETRESLRALIGAGASDMPE
                     IKPVALPRVQTGIPATLSYELLARRPDLQAMRWYVQASLDQVDSARALFYPSFDIKAF
                     FGLDSIHLDTLFKKTSRQFNFIPGLKLPLFDGGRLNANLEGTRAASNMMIERYNQSVL
                     NAVRDVAVNGTRLQTLNDEREMQAERVEATRFTQRAAEAAYQRGLTSRLQATEARLPV
                     LAEEMSLLMLDSRRVIHSIQLMKSLGGGYQAAPVVEKK"
     gene            complement(17247..19298)
                     /gene="mdtO"
                     /locus_tag="JN078_000925"
     CDS             complement(17247..19298)
                     /gene="mdtO"
                     /locus_tag="JN078_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418505.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter permease subunit
                     MdtO"
                     /protein_id="HAY9040206.1"
                     /translation="MSALNSLPLPVVRLLAFFHEELSERRPGRVPQIVQLWVGCLLVI
                     LISMTFEIPFVALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWSYGEP
                     LIRLIIAGPILMGCMFLMRTHRLGLVFFAVAIVAIYGQTFPAMLDYPEVVVRLTLWCI
                     VVGLYPTLLMTLIGVLWFPSRAISQMHQALNDRLDDAISHLTDSLAPLPETRIEREAL
                     ALQKLNVFCLADDANWRTQSAWWQSCVATVTYIYSTLNRYDPTSFADSQAIIEFRQKL
                     ASEINKLQHAVAEGQCWQSDWRISESEAVAARECNLENICQTLLQLGQMNPNTPPTPA
                     AKPPSMVADAFTNPDYIRYAVKTLLACLICYTFYSGVDWEGIHTCMLTCVIVANPNVG
                     SSYQKMVLRFGGAFCGAILALLFTLLVMPWLDNIVELLFVLAPIFLLGAWIATSSERS
                     SYIGTQMVVTFALATLENVFGPVYDLVEIRDRALGIIIGTVVSAVIYTFVWPESEART
                     LPQKLAGALGMLSKVMRIPRQQEVTALRTYLQIRIGLHAAFNACEEMCQRVALERQLD
                     SEERALLIERSQTVIRQGRDLLHAWDATWNSAQALDNALQPDRAGQFADALEKYAAGL
                     ATALSCSPQITLEETPASQAILPTLLKQEQHVCQLFARLPDWTAPALTPATEQAQGAT
                     Q"
     gene            complement(19298..20329)
                     /gene="mdtN"
                     /locus_tag="JN078_000926"
     CDS             complement(19298..20329)
                     /gene="mdtN"
                     /locus_tag="JN078_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter periplasmic adaptor
                     subunit MdtN"
                     /protein_id="HAY9040207.1"
                     /translation="MESTPKKAPRSKFPALLVVALALVALVFVIWRVDSAPSTNDAYA
                     SADTIDVVPEVSGRIVELAVTDNQAVKQGDLLFRIDPRPYEANLAKAEASLAALDKQI
                     MLTQRSVDAQQFGADSVNATVEKARAAAKQATDTLRRTEPLLKEGFVSAEDVDRARTA
                     QRAAEADLNAVLLQAQSAASAVSGVDVLVAQRAAVEADIALTKLHLEMATVRAPFDGR
                     VISLKTSVGQFASAMRPIFTLIDTRHWYVIANFRETDLKNIRSGTPATIRLMSDSGKT
                     FEGKVDSIGYGVLPNDGGLVLGGLPKVSRSINWVRVAQRFPVKIMVDKPDPEMFRIGA
                     SAVANLEPQ"
     gene            complement(20348..20623)
                     /locus_tag="JN078_000927"
     CDS             complement(20348..20623)
                     /locus_tag="JN078_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040208.1"
                     /translation="MPTVLSRMAMQLKKTAWIIPVFMVSGCSLSPAIPVIGAYYPSWF
                     FCAIASLILTLITRRIIQRANINLAFVGIIYTALFAVYAMLFWLAFF"
     gene            complement(20832..22817)
                     /gene="yjcS"
                     /locus_tag="JN078_000928"
     CDS             complement(20832..22817)
                     /gene="yjcS"
                     /locus_tag="JN078_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418507.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl sulfatase YjcS"
                     /protein_id="HAY9040209.1"
                     /translation="MNNSRLFRLSRIVIALTAASGMMVNTANAKEEAKAATQYTQQVN
                     QNYAKSLPFSDRQDFDDAQRGFIAPLLDEGILRDANGKPYYRGEDYKFDINAPAPETV
                     NPSLWRQSQLNGISGLFKVTDRMYQVRGQDISNITFIEGDTGIIVIDPLVTPPSAKAA
                     LDLYFQNRPQKPIVAVIYTHSHTDHYGGVKGIISEADVKSGKVQVIAPAGFMDEAISE
                     NVLAGNIMSHRALYSYGLLLAHNPQGNIGNGLGVTLASGYPSIIAPNKTITKTGEKMI
                     IDGLEFDFLMTPGSEAPAEMHFYIPALKALCTAENATHTLHNFYTLRGAKTRDTSKWT
                     EYLNETLDMWGNDAEVLFMPHTWPVRGNKHINDYIGKYRDTIKYIHDQTLHLANQGYT
                     MNEIGDMIKLPPALANNWASRGYYGSVSHNARAVYNFYLGYYDGNPANLHPYGQVEMG
                     KRYVQALGGSARVISLAQEANKQGDYRWSAELLKQVIAANPGDQVAKNLQANNFEQLG
                     YQAESATWRGFYLTGAKELREGVHKFSHGTTGSPDTIRGMSVEMLFDFMSVRLDSAKA
                     AGKNISLNFNMSNGDNLNLTLNDSVLNYRKTLQPQADASFYISREDLHAVLTGQAKMA
                     DLVKAKKAKIIGNGAKLEEIIACLDNFDLWVNIVTPN"
     gene            23070..23387
                     /locus_tag="JN078_000929"
     CDS             23070..23387
                     /locus_tag="JN078_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001183281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase"
                     /protein_id="HAY9040210.1"
                     /translation="MQPVFLFKKRTGAMGGHVAGTAGFCVAVPAFYSWSMSEVIDKDT
                     RSSERTDYPHYASEVALAFGSRVVGLELAKMIVDAWLGAQYEGGRHQQRVEAITAIEQ
                     RRN"
     gene            23456..23785
                     /gene="yjdP"
                     /locus_tag="JN078_000930"
     CDS             23456..23785
                     /gene="yjdP"
                     /locus_tag="JN078_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YjdP"
                     /protein_id="HAY9040211.1"
                     /translation="MKRFPLFLLFTLLTLSTVPAQADIIDDTIGNIQQAINDAYNPDR
                     GRDYEDSRDDGWQREVSDDRRRQYDDRRRQFEDRRRQLDDRQRQLDQERRQLEDEERR
                     MEDEYGR"
     gene            complement(23932..24690)
                     /gene="phnP"
                     /locus_tag="JN078_000931"
     CDS             complement(23932..24690)
                     /gene="phnP"
                     /locus_tag="JN078_000931"
                     /EC_number="3.1.4.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate metabolism protein PhnP"
                     /protein_id="HAY9040212.1"
                     /translation="MSLTLTLTGTGGAQGVPAWGCECVACARARRSPQYRRQPCSGVV
                     KFNDAITLIDAGLHDLADRWPPGSFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVYGPP
                     DEQGCDDLFKHPGLLDFSHTVEPFVVFDLQGLQVTPLPLNHSKLTFGYLLETAHSRVA
                     WLSDTAGLPEKTLKFLRNNQPQVMVIDCSHPPREDAPRSHCDLNTVLALNQVIRSPRV
                     ILTHISHQFDAWLMENALPSGFEAGFDGMEIGVA"
     gene            complement(24692..25156)
                     /gene="phnO"
                     /locus_tag="JN078_000932"
     CDS             complement(24692..25156)
                     /gene="phnO"
                     /locus_tag="JN078_000932"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoalkylphosphonate N-acetyltransferase"
                     /protein_id="HAY9040213.1"
                     /translation="MPACELRPATQYDTDAVYALICELKQAEFDHHAFRVGFNANLRD
                     PSMRYPSMRYPSMRYHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQACGLN
                     VGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSHFRFTKAL"
     gene            complement(25143..25700)
                     /gene="phnN"
                     /locus_tag="JN078_000933"
     CDS             complement(25143..25700)
                     /gene="phnN"
                     /locus_tag="JN078_000933"
                     /EC_number="2.7.4.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 1,5-bisphosphokinase"
                     /protein_id="HAY9040214.1"
                     /translation="MMGKLIWLMGPSGSGKDSLLAELRLREQTQLLVAHRYITRDASA
                     GSENHIALSEREFFTRAGQNLLALSWHANGLYYGVGIEIDLWLHAGFDVVVNGSRAHL
                     PQARARYQSALLPVCLQVSPEILRQRLKNRGRENTSEINARLARAARYTPQDCHTLNN
                     DGSLRQSVDTLLTLIHQKEKHHACL"
     gene            complement(25700..26836)
                     /gene="phnM"
                     /locus_tag="JN078_000934"
     CDS             complement(25700..26836)
                     /gene="phnM"
                     /locus_tag="JN078_000934"
                     /EC_number="3.6.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-ribose 1-methylphosphonate
                     5-triphosphate diphosphatase"
                     /protein_id="HAY9040215.1"
                     /translation="MIINNVKLVLENEVVHGSLEVQDGEIRAFAESQSRLPEAMDGEG
                     GWLLPGLIELHTDNLDKFFTPRPKVDWPAHSAMSSHDALMVASGITTVLNAVAIGDVR
                     DGGDQLENLEKMINTIEETQKRGVNRAEHRLHLRCELPHHTTLPLFEKLVQREPVTLV
                     SLMDHSPGQRQFANREKYREYYQGKYSLTDAQMQQYEEEQLALAARWSQPNRESIAAL
                     CRARQIALASHDDATHAHVAESHQLGSVIAEFTTTFEAAEASRKHGMNVLMGAPNIVR
                     GGSHSGNVAASELAQLGLLDILSSDYYPASLLDAAFRVADDESNRFTLPQAVRLVTKN
                     PAQALNLQDRGVIGEGKRADLVLAHRQGNHIHIDHVWRQGKRVF"
     gene            complement(26833..27513)
                     /gene="phnL"
                     /locus_tag="JN078_000935"
     CDS             complement(26833..27513)
                     /gene="phnL"
                     /locus_tag="JN078_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnL"
                     /protein_id="HAY9040216.1"
                     /translation="MINVQNVSKTFILHQQNGVRLPVLQRASLTVNAGECVVLHGHSG
                     SGKSTLLRSLYANYLPDEGQIQIKHGDEWVDLVTAPARKVVEIRKTTVGWVSQFLRVI
                     PRISALEVVMQPLLDTGVPREACAAKAARLLTRLNVPERLWHLAPSTFSGGEQQRVNI
                     ARGFIVDYPILLLDEPTASLDAKNSAAVVELIHEAKARGAAIVGIFHDEAVRNDVADR
                     LHPMGASS"
     gene            complement(27624..28382)
                     /gene="phnK"
                     /locus_tag="JN078_000936"
     CDS             complement(27624..28382)
                     /gene="phnK"
                     /locus_tag="JN078_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnK"
                     /protein_id="HAY9040217.1"
                     /translation="MNQPLLSVNNLTHLYAPGKGFSDVSFDLWPGEVLGIVGESGSGK
                     TTLLKSISARLTPQQGEIHYESRSLYAMSEADRRRLLRTEWGVVHQHPLDGLRRQVSA
                     GGNIGERLMATGARHYGDIRATAQKWLEEVEIPANRIDDLPTTFSGGMQQRLQIARNL
                     VTHPKLVFMDEPTGGLDVSVQARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLV
                     MKQGQVVESGLTDRVLDDPHHPYTQLLVSSVLQN"
     gene            complement(28379..29224)
                     /gene="phnJ"
                     /locus_tag="JN078_000937"
     CDS             complement(28379..29224)
                     /gene="phnJ"
                     /locus_tag="JN078_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-ribose 1-methylphosphonate 5-phosphate
                     C-P-lyase PhnJ"
                     /protein_id="HAY9040218.1"
                     /translation="MANLSGYNFAYLDEQTKRMIRRAILKAVAIPGYQVPFGGREMPM
                     PYGWGTGGIQLTASVIGESDVLKVIDQGADDTTNAVSIRNFFKRVTGVNTTERTDDAT
                     LIQTRHRIPETPLTEDQIIIFQVPIPEPLRFIEPRETETRTMHALEEYGVMQVKLYED
                     IARFGHIATTYAYPVKVNGRYVMDPSPIPKFDNPKMDMMPALQLFGAGREKRIYAVPP
                     FTRVESLDFDDHPFTVQQWDEPCAICGSTHSYLDEVVLDDAGNRMFVCSDTDYCRQQS
                     EAKNQ"
     gene            complement(29217..30275)
                     /gene="phnI"
                     /locus_tag="JN078_000938"
     CDS             complement(29217..30275)
                     /gene="phnI"
                     /locus_tag="JN078_000938"
                     /EC_number="2.7.8.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-ribose 1-methylphosphonate
                     5-triphosphate synthase subunit PhnI"
                     /protein_id="HAY9040219.1"
                     /translation="MYVAVKGGEKEIDAAHALQESRRRGNTDLPELSVAQIEQQLNLA
                     VDRVMTEGGIADRELAALALKQASGDNVEAIFLLRAYRTTLAKLAVSEPLDTTEMRLE
                     RRISAVYKDIPGGQLLGPTYDYTHRLLDFTLLANGEAPTLTTADSEQSPSPHVFSLLA
                     RQGLAKFEEDSGAQPDDITRTPPVYPCSRSSRLQQLMRGDEGYLLALAYSTQRGYGRN
                     HPFAGEIRSGYIDVSIMPEELGFAVNVGELLMTECEMVNGFIDPPDEPPHFTRGYGLV
                     FGMSERKAMALVDRALQAPEYGEHATGPAQDEEFVLAHADNVEAAGFVSHLKLPHYVD
                     FQAELELLKRLQQEQNHG"
     gene            complement(30275..30859)
                     /gene="phnH"
                     /locus_tag="JN078_000939"
     CDS             complement(30275..30859)
                     /gene="phnH"
                     /locus_tag="JN078_000939"
                     /EC_number="2.7.8.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnH"
                     /protein_id="HAY9040220.1"
                     /translation="MTLETAFMLPVQDAQHSFRRLLKAMSEPGVIVALHQLKRGWQPL
                     NIATTSVLLTLADNDTPVWLSAPLSNDIVSQSLRFHTNAPLVNQSELATFAVTDEAIS
                     SEQLNALSSGTAVAPEAGATLILQVVSLSGGRMLRLTGAGIAEERMIAPQLPECILHE
                     LTERPHPFPLGIDLILTCGERLLAIPRTTHVEVC"
     gene            complement(30856..31308)
                     /gene="phnG"
                     /locus_tag="JN078_000940"
     CDS             complement(30856..31308)
                     /gene="phnG"
                     /locus_tag="JN078_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnG"
                     /protein_id="HAY9040221.1"
                     /translation="MHADIATRQHWMSMLAHSQPAELAARLNALNITANYEVIRTAET
                     GLVQIQPRMGGTGERFFAGDATLTRAAVRLTDGPLGYSWVLGRDKQHAERCALIDALM
                     QQSRHFQNLSETLIAPLDADRMARIAARQAEVNASRVDFFTMVRGDNA"
     gene            complement(31309..32034)
                     /gene="phnF"
                     /locus_tag="JN078_000941"
     CDS             complement(31309..32034)
                     /gene="phnF"
                     /locus_tag="JN078_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate metabolism transcriptional regulator
                     PhnF"
                     /protein_id="HAY9040222.1"
                     /translation="MHLSTHPTSYPTRYQEIAAKLEQELRQHYRCGDYLPAEQQLAAR
                     FEVNRHTLRRAIDQLVEKGWVQRRQGVGVLVLMRPFDYPLNAQARFSQNLLDQGSHPT
                     SEKLLSVLRPASGHVADALGITEGENVIHLRTLRRVNGIALCLIDHYFADLTLWPTLQ
                     RFDSGSLHDFLREQTGIALRRSQTRISARRAQAKECQRLEIPNMSPLLCVRTLNHRDG
                     ESSPAEYSVSLTRADMIEFTMEH"
     gene            complement(32055..32834)
                     /gene="phnE"
                     /locus_tag="JN078_000942"
     CDS             complement(32055..32834)
                     /gene="phnE"
                     /locus_tag="JN078_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313113.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter, permease protein
                     PhnE"
                     /protein_id="HAY9040223.1"
                     /translation="MQTITIAPPKRSWFSLLSWAVVLAVLVVSWQGAEMAPLTLIKDG
                     GNMATFVADFFPPDFSQWQDYLTEMAVTLQIAVWGTALAVVLSIPFGLMSAENLVPWW
                     VYQPVRRLMDACRAINEMVFAMLFVVAVGLGPFAGVLALFIHTTGVLSKLLSEAVEAI
                     EPGPVEGIRATGANKLEEILYGVLPQVMPLLISYSLYRFESNVRSATVVGMVGAGGIG
                     VTLWEAIRGFQFQQTCALMVLIIVTVSLLDFLSQRLRKHFI"
     gene            complement(32960..33976)
                     /gene="phnD"
                     /locus_tag="JN078_000943"
     CDS             complement(32960..33976)
                     /gene="phnD"
                     /locus_tag="JN078_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY9040224.1"
                     /translation="MNAKIIASLAFTSMFSLSTLLSPAHAEEQEKALNFGIISTESQQ
                     NLKPQWTPFLQDMEKKLGVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRA
                     NGQVFAQTVAADGSPGYWSVLIVNKDSPINNLNDLLAKRKDLTFGNDDPNSTSGFLVP
                     GYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKE
                     LKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERLGWAPFRASS
                     DLQLVPIRQLALFKEMQGVKSNKGLNEQDKLAKTTEIQAQLDDLDRLNNALSAMSSVS
                     KAVQ"
     gene            complement(34001..34789)
                     /gene="phnC"
                     /locus_tag="JN078_000944"
     CDS             complement(34001..34789)
                     /gene="phnC"
                     /locus_tag="JN078_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709835.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter ATP-binding protein"
                     /protein_id="HAY9040225.1"
                     /translation="MQTIIRVEKLAKTFNQHQALHAVDLNIHHSEMVALLGPSGSGKS
                     TLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRAHTGYIFQQFNLVNRLS
                     VLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQR
                     VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALR
                     YCERIVALRQGHVFYDGSSQQFDNERFDHLYRSINRIEENAKAA"
     gene            complement(34922..35365)
                     /gene="yjdN"
                     /locus_tag="JN078_000945"
     CDS             complement(34922..35365)
                     /gene="yjdN"
                     /locus_tag="JN078_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family metalloprotein YjdN"
                     /protein_id="HAY9040226.1"
                     /translation="MPLSPYLSFAGNCSDAIAYYQRTLGAELLYKISFGEMPKSAQDS
                     AENCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSGKASYSGFTLVLDSQQVEEGKRW
                     FDNLAANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVVKQQPTQ"
     gene            complement(35525..35860)
                     /locus_tag="JN078_000946"
     CDS             complement(35525..35860)
                     /locus_tag="JN078_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004856597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phnA family protein"
                     /protein_id="HAY9040227.1"
                     /translation="MSLPHCPKCNSEYTYEDNGMYICPECAYEWNDTEPAQESDELIV
                     KDANGNLLADGDSVTIIKDLKVKGSSSMLKIGTKVKNIRLVEGDHNIDCKIDGFGPMK
                     LKSEFVKKN"
BASE COUNT         7819 a         9697 c        10216 g         8434 t
ORIGIN      
        1 ctggagagga agagtattcc ccggtcaggc gaccggggaa ggggagagat taatgtgcgc
       61 ggccttgctc aacgccaaag ccggtctggg agcggataaa ctgcgcacgg aacagttcac
      121 gctcgcgcgc accttccgct gagttatcgg ttgccgagaa gaaccagatg ccgaggaatg
      181 ccacgctgat agagaacagc gccgggtatt catacgggaa gatggctttt tcgtgaccga
      241 ggatctgtac ccaaatagtc gggccgagga tcatcagcac cactgcggta atcaacccca
      301 gccagccgcc cagcatcgtg ccacgggtag tcagtttcga ccagtacatg gaaagcagaa
      361 tgatcgggaa gttacagctc gccgcgatgg caaacgcaag gcctaccata aaggcgatgt
      421 tctgattctc aaacagcatg ccgaggataa tcgcaatcac acccaaaatc aggacggtga
      481 ttttcgatac ccgcagttct tcacgttcgg tcgcaccttt tttgaagacg ttagcgtaca
      541 agtcatgcga aaccgcggat gcgcccgcca gcgtcagacc cgcaaccacc gcgaggatag
      601 tggcgaaagc aaccgctgaa ataaaaccga ggaacaggtt gccgcccact gcattcgcca
      661 ggtgaacggc cgccatgttg ttaccaccaa tcagatggcc cgccgcgtct ttatattccg
      721 gattcgcacc aaccagcatg atcgcgccga agccgataat aaaggtcaga atatagaagt
      781 agcccataaa cccggtggcg tagaacacgc tcttacgtgc ttcgcgggca tcgctgactg
      841 taaagaagcg catcagaatg tgcggcaagc ccgccgtacc aaacatcagt cccagaccca
      901 gagagagcgc ggagatcgga tctttcacca gcccgcccgg cttcatgatg tcgacacctt
      961 tcgggtgtac cgccatcgct tcgctgaaca gattattgaa gctaaagccg acgtgtttca
     1021 tcaccataaa ggccataaag ctggcaccga acagcaacag cacggcttta ataatttgca
     1081 cccaggtggt cgccagcatg ccgccgaaca ggacgtacat catcatcagc acgccgacca
     1141 gcaccaccgc aatgtgatag ttaaggccaa acagcagctc gatcagttta cctgcgccta
     1201 ccatctgggc gataaggtaa agcgccacca ccaccagaga accacaggcc gaaagaatac
     1261 gaatcggccc ttgtttcagg cggtaagagg ctacatcggc aaaggtgtag cgtcccaggt
     1321 tacgcagacg ttcggcaatc aggaacaaaa tgatcggcca gcccaccagg aagcccagcg
     1381 agtaaattaa gccgtcatag ccggaggtaa acaccagcgc ggagatcccc aaaaatgagg
     1441 cggcggacat atagtcaccg gcaatcgcca gcccgttctg gaagcctgtg atattgccgc
     1501 ctgccgtgta gtagtcgcta cgagaacgta cgcgttttga tgcccagtag gtaatgccga
     1561 gcgtaaacac gacgaaaatc aggaacataa taatcgcctg ccagttcgtt ggctggcgct
     1621 ctacggcccc gctaatagca tccgcggcgt tagctgcgaa agggagtgtg gcggcaagcg
     1681 ccgtcagaac tcttttcatg atgcttgtac ctcatgcagg acttcattat taagacggtc
     1741 gaattcgccg ttcgcccgcc agatgtagat accggtgaga acaaaggaga tcacaatcac
     1801 tccaacacca attggaatac cgcgtgtgac gctggtgttc ggattcagcg gcgtgcccag
     1861 ccagccgggc gcgaaggcga tcagtaaaat aaagccgata taaactgcca gcataataat
     1921 cgacaggatg gtggcaaacc gttgccgttt ttcgactaac tccctgaaat gcgcattgtc
     1981 ttctatccgc tgataaatag tgccattcat cacagattct ccagaggtaa tgtagggatt
     2041 gttttaattc ccgctccctt atgggagaag gttaacgctc gggtaaccct tgccgaatgt
     2101 aggccggata aggcgtttac gccgcatccg gcaattgtgg gttacgatgg catcgcgata
     2161 gcctgcttct cttcaagcag cttctcgact acgccaggat cggcaagcgt cgaggtatcg
     2221 cccaggttgc tggtatcgcc cgccgcaatt ttgcgcagaa tacggcgcat aattttgccg
     2281 gagcgggttt taggcaggga gtcggtccag tgcagcacgt ctggcgtcgc cagcgggcca
     2341 atctctttac gcacccagtt gcggacttct gcgtacagtt ctggtgacgg ttcctccccg
     2401 tgattaagcg tgacgtaggc gtagatcgcc tgacctttaa tattgtgcgg aatacctact
     2461 acggcggctt cggcaatctt cggatgcgcc accagcgccg actcaatctc tgccgtcccc
     2521 agacggtgac cggagacgtt cagcacgtcg tccacacgcc cggtgatcca gtaatagcca
     2581 tcttcatcgc gacgcgcgcc gtcgccgctg aaatacatat ttttgaaggt ggagaagtag
     2641 gtctgttcaa aacgttcgtg atcgccaaac agcgtacgcg cctgacccgg ccaggagtcg
     2701 gtgatcacca ggctgccttc ggtagcgcct tccagcgggt taccttcgtt atcgaccagc
     2761 gccggttgca cgccgaagaa cggacgtgtt gccgaaccgg ctttcagccc ggtagcgcca
     2821 ggcagtggcg tgatcatgaa accgccagtt tcggtctgcc accaggtatc gaccaccgga
     2881 catttctcgt tgccgatttt tttccagtac cactcccacg cttccgggtt aattggctcg
     2941 cccacggaac cgagaatgcg cagcgacgaa cggtcggtac cctcgatcgc tttatcgcct
     3001 tccgccatca gcgcgcggat cgccgtgggt gcggtataga gaatattgac ctgatgcttg
     3061 tccaccacct gcgccatacg ggcaggcgtc ggccagttgg gtacgccttc aaacatcagc
     3121 gtggtcgcac cgcaggccag cgggccgtac agcaagtaac tgtgtccggt cacccagccc
     3181 acatcggcgg tgcaccagta gatatcaccc ggatgataat caaagacata tttaaaggtc
     3241 agcgccgcgt acaccagata accgccggta gtatgcagca caccttttgg cttaccggta
     3301 gaaccggagg tgtagagaat aaacagcgga tcttcggcgt tcatctcttc cgcttggtgc
     3361 tgatcgctcg cttgctcaac caggtcgtgc caccacaggt cgcgcccttc ctgccagtca
     3421 attttcccgc cagtacgctt cagtaccacc acatgctcta cgctggtgac gttcgggttt
     3481 ttcagcgcgt catcaacgtt tttcttcagc ggaatactgc cgcccggcac gcacaccttc
     3541 gtcggaagtg atcaccagtc gtgagttgga atcaataatg cgcccggcaa cggcttccgg
     3601 cgagaagccg ccgaaaatca ccgaatgcac cgcgccaatg cgggcgcagg ccagcatcgc
     3661 aaccgcggct tccggcacca tcggcatata aatcgccacc acatcacctt ttttaatgcc
     3721 cagctcgagc agggtattgg cgaagcggca gacgtcgcgg tgcagctctt tatagctgat
     3781 atgtttgctc tggctgacgt cgtcgccttc ccagatgatg gcggtacgat cgccgttttc
     3841 ttgcagatgg cggtcaaggc agtttgccgc cagattcagc gtgccgtcct cgtaccattt
     3901 aatggacaca ttaccggggg caaaggaggt gtttttcacc ttctggtaag gtttgatcca
     3961 gtcaagaatt tttccctgtt cgccccagaa ggtatcaggt acgttaatag attgttgata
     4021 cattgcctcg tactgctgag ggtttatcag gcaacggtct gcgatgttgg caggaatggt
     4081 gtgtttgtga atttggctca tgcttttgtt ctccttgtag aatgttaata atatgtgaca
     4141 taagcgttaa atgtaggggt attggcagtt ttgtttagta tttgggcgac agatcacgca
     4201 aaagtagaat tgtgcaaata aacggcaggg taatttttga aggtcagcaa caaaagttga
     4261 ttaattcttt gaggaacatg cagttatgca tgctgttgaa aaagaggaag atactgacta
     4321 actctaaagt ggtattttac atgcacttac aattgattaa agacaacatt cacagtgtgg
     4381 ttatttgtta cacatagggg cgagcaatgt catgacagtg taggtgcggt tactgtcgtg
     4441 aaaaacaata aaaaccgcca ttgcaacaat ggcgcaattc ggatgaagcc cctatgacaa
     4501 ggataaaaat aaacgcacgc cgtatcttca gcttattgat tccttttttc tttttcactt
     4561 ctgttcacgc tgaacaaacg gcagctcccg caaaacctgt aactgtggaa gcgaagaatg
     4621 aaacctttgc cccgcagcat cccgatcaat atctctcctg gaaagccacc tcggaacagt
     4681 cagagcgtgt tgacgccctg gcggaagatc cacggctggt gatcctgtgg gcggggtatc
     4741 ccttctcgcg cgattacaac aagccgcgtg gacatgcctt tgctgtgacc gatgtgcgtg
     4801 aaaccctgcg taccggtgcg ccgaaaaatg ctgaagatgg tccgctaccg atggcgtgct
     4861 ggagttgtaa aagcccggat gtggcgcgtc tgatccagaa agacggcgaa gatggctact
     4921 tccacggtaa gtgggcgcgc ggcggcccgg aaatcgtcaa caacttaggt tgtgccgact
     4981 gccataacac cgcctcacca gagttcgcca aaggcaaacc ggagttaacc ctttcccgtc
     5041 cgtatgcggc tcgcgcgatg gaagccattg gtaaaccttt tgagaaagcc ggacgtttcg
     5101 accagcaatc gatggtttgc ggtcagtgcc atgtggagta ttacttcgac ggcaaaaaca
     5161 aagcggttaa attcccgtgg gatgacggca tgaaagtcga aaatatggag cagtattacg
     5221 acaaaattgc cttctctgac tggactaact ccctgtcgaa aacgccaatg ctgaaagcgc
     5281 agcacccgga atatgaaacc tggacagcgg gcattcacgg taaaaacaac gtgacctgta
     5341 tcgactgcca tatgccaaaa gtgcagaacg ccgaaggcaa actctacacc gaccataaaa
     5401 ttggtaatcc gtttgataac ttcgcccaga cttgtgcgaa ctgccatacc caggacaaag
     5461 ctgccttgca aaaagtggtc gcggaacgta agcagtcgat taacgacctg aaaatcaagg
     5521 ttgaagatca actggttcac gctcacttcg aagcgaaagc agcgctggat gcaggcgcga
     5581 cggaagctga aatgaagcca attcaggacg atatccgtca tgcccagtgg cgctgggatc
     5641 tggcgatcgc ttcccacggc attcatatgc acgcaccgga agaaggttta cggatgctcg
     5701 gtacggcgat ggataaagcg gcggatgcac gcaccaaact ggcgcgcctg ctggcgacca
     5761 aaggcatcac ccatgaaatc cagatcccgg atatctcaac caaagagaaa gcccagcagg
     5821 ccattggcct gaacatggaa caaatcaagg ccgagaagca ggacttcatc aaaacggtga
     5881 tcccgcagtg ggaagaacag gcacgtaaaa acggtctgtt aagccaataa ccccgttccg
     5941 cctcgcaagg ggcggaaaac acaatggagt gaatatgagc gtattacgtt cgttattaac
     6001 tgctggggtg ctggcgtcgg gcctgttgtg gagcctgaac ggaattaccg ctacccctgc
     6061 ggcgcaggca tctggtgatc gctacgaagt tacccagcag cgtaacccgg atgccgcctg
     6121 tctggactgt cataaaccag ataccgaagg tatgcatggc aaacatgctt ccgttatcaa
     6181 cccgaataac aaattgccgg tcacctgcac caactgtcac ggccagccat caccgcaaca
     6241 ccgcgaaggg gtgaaagatg tgatgcgctt taacgagccg atgtacaagg tcggagagca
     6301 gaacagcgtc tgtatgtcct gtcatctgcc ggaacagttg caaaaagcgt tctggccgca
     6361 cgatgtccac gtaaccaaag tggcgtgcgc cagctgccat tccctgcatc cacagcaaga
     6421 tacgatgcag acgttaagtg acaaaggacg gattaagatt tgcgtcgatt gccacagcga
     6481 tcagcgcacc aatccgaact ttaacccggc gtctgttccg ttgcttaagg agcagccatg
     6541 acctggtctc gtcgccagtt tctcaccggc gtcggcgtgc tggcagccgt cagcggcacc
     6601 gcagggcgcg tggtggcgaa aacgttgaat atcaatgggg tgcgttacgg catggtgcat
     6661 gacgagtcgt tatgcatcgg ctgtaccgcc tgtatggatg cttgtcgaga agtgaacaag
     6721 gtgccggaag gcgtctcgcg cctgacgatt attcgtagcg agccgcaggg cgaatttcct
     6781 gatgtgaaat atcgcttctt ccgtaagtct tgccagcact gcgatcatgc gccgtgcgtt
     6841 gacgtctgcc cgaccggtgc gtcttttcgt gatgccgcta gcgggattgt cgatgttaat
     6901 cctgatctct gcgtcggttg tcagtactgc atcgccgcct gtccgtaccg cgtgcgcttt
     6961 atccatccgg tcacgaagac ggcggacaaa tgcgatttct gccgtaaaac caatttgcag
     7021 gccggtaagc tgcccgcgtg cgttgaggct tgcccgacga aggcgctgac gtttggcaat
     7081 ctggacgatc ctaacagtga gatttcgcaa ctgctgcgcc agaagcctac ttaccgctac
     7141 aagctggcgc tgggaaccaa accgaagctg taccgcgtac cgtttaaata cggggaggtg
     7201 agccaatgac gcagacttcc gcatttcatt ttgaatcgct ggtgtgggac tggccgattg
     7261 ccatctacct gtttttgatt ggtatttctg ccggtctggt gacgctggcc gtgctgttac
     7321 gtcgcttcta cccgcaggcg ggcggtgcag acagtacgtt gctgcgcacc acgctgattg
     7381 tcgggccggg cgcggtgatc ctcggtctgt tgatcctcgt cttccacctg acaagaccgt
     7441 ggaccttctg gaagctgatg ttccactaca gttttacctc ggtgatgtcg atgggggtga
     7501 tgctgtttca gctttacatg gtggtgctgg tgctgtggct ggcgaaaatc tttgaacatg
     7561 atttgcttgc ccagcaacaa cgctggttgc cgaagctggg gatcgtgcaa aaggttctga
     7621 gcctgctgac gcccgttcat cgcggactgg aaacgctgat gctggtgttg gcggtgctgc
     7681 tgggggctta taccggcttt ctgctgtcgg cgctgaaatc gtatccgttc ctcaataacc
     7741 cgatcctgcc ggtgctgttc ctcttctccg gcatctcgtc cggtgcggcg gtggcgctga
     7801 tcgccatggc gatacgccaa cgcagtaacc cgcattccac ggaagcgcac tttgttcacc
     7861 ggatggaaat ccccgtggta tggggtgaaa tcttcctgct ggtggcgttt tttgtcggtc
     7921 tggcgctggg cgatgacggt aaagttcgtg cgctggtggc ggcattaggt ggcggtttct
     7981 ggacgtggtg gttctggctt ggtgtcgccg ggctggggct gattgtgcca atgttgctca
     8041 aatcgtgggt caatcgcagt tccggcattc ctgccgtgct ggcggcgtgt ggggccagtc
     8101 tggtcggcgt gttgatgctg cgctttttca ttctctacgc cggacagttg acggtggcgt
     8161 aagccagaaa agaggtggtt tctggacgta ttccttcctg aagtcggttt tctggcgttg
     8221 ttgttaagtc tcggggtcaa cgtgttgacc ccgttgacgg cctttgcggg agtgcggttg
     8281 cgctggcctg ccatgatgcg actcacttgc atcggcattc tggcgcagtg cgcgctcctg
     8341 ctgctcgcct ttggcgtact gacgtattgt tttctcatca gcgatttctc ggtcatttat
     8401 gtcgcccaac atagctacag cctgctgtcg tgggaactca aactggcggc ggtgtggggc
     8461 ggtcatgaag gttcgctgct gctttgggtg ctgctgcttt ccgcctggag cgcgctgttt
     8521 gcctggcatt atcggcagca aaccgatccg ctatttccgc tgacgctagc cgttttatct
     8581 ctcatgctcg ccgcactgct actgtttgtg gtgctgtggt ccgatccctt cgtgcggata
     8641 tttccaccag caatcgaagg ccgcgatctc aatccgatgc tgcaacatcc cggtcttatc
     8701 tttcatccac cgctgcttta ccttggctat ggcggtttga tggtagcggc gagcgtggcg
     8761 ctggcgagtc tactgcgcgg cgagtttgat gcggccagcg cccgaatttg ctggcgctgg
     8821 gcgttacctg gctggagtgc attaacggcg gggatcatcc tcggttcctg gtgggcctac
     8881 tgcgaactcg gctggggcgg ctggtggttc tgggatccgg tggaaaatgc ctctttatta
     8941 ccctggcttt ctgccactgc gctgctgcac agtttatccc tgacacgcca gcgggggatt
     9001 tttcgccact ggtcgctgtt actggcgata gttactctga tgctgtcgct gctgggcacc
     9061 ttaattgtcc gttctggcat tctggtttcg gttcatgcgt tcgcgctgga taacgtccgc
     9121 gccgtgccgt tgttcagcct gtttgcactg attagccttg cgtctctggc tctgtatggc
     9181 tggcgagcgc gggacggtgg cccggcggtg cgtttttcgg ggttatcgcg ggaaatgtta
     9241 atcctcgcta cgctgttgct gttttgcgca gtgctactga tcgtgctggt gggaacgctt
     9301 tatccgatga tttacggtct gctgggctgg ggacgcctct ccgttggcgc gccgtatttt
     9361 aaccgcgcga cgttaccgtt tggtctgttg atgctggtgg tgattgtgct ggcgacgttt
     9421 gtctctggca aacgcgtgca gcttccggcg ctggtagctc atgcgggcgt gctgttattt
     9481 gccgctggga tcgtggtttc cagcgtcagc cgtcaggaga tcagcctgaa tttacagccg
     9541 ggtcagcagg tgacgctggc aggatacacc ttccgttttg agcgcctcga tctgcaagcc
     9601 aaaggcaatt acaccagcga aaaagcgata gtggcactgt ttgaccatca gcaacgcatt
     9661 ggtgaactga tgccggagcg gcgtttttac gaagcacgtc gtcagcaaat gatggaaccg
     9721 tcaattcgct ggaacggcat ccatgactgg tatgtggtca tgggtgaaaa aaccggagcg
     9781 gatcgttacg cttttcgctt gtatgtacaa agcggtgtgc gctggatctg ggggggagga
     9841 ttgttgatga ttgcgggcgc attgttaagc ggatggcggg ggaggaagcg cgatgaataa
     9901 aggacttctc acgctactgc tgttatttac ctgttttgcg cgcgctcagg tcgtagacac
     9961 ctggcaattc gccaatccgc aacaacagca acaggcgtta aatattgcca gccagttacg
    10021 ttgtccgcag tgccagaatc aaaacttact ggaatccaac gcgccggtgg cagtcagtat
    10081 gcgccatcag gtttacagca tggtggcgga ggggaagaac gaagtcgaaa tcattggctg
    10141 gatgaccgaa cgctacggag attttgttcg ctataaccca ccgttaacgg gtcagacgct
    10201 ggtgttgtgg gcgctgccag tggtgttgtt actgctgatg gcactgatcc tctggcgagt
    10261 gagggcgaag cgatgaaaga gcccaaaata ccggtgaaaa tgctgacaac actcacgatt
    10321 ttgatggtat ttctctgtgt cggcagttat ctgttaagtc caaaatggca ggcggtacat
    10381 gcggaatatc agcgtcagcg cgatccgcta catcagtttg ccagccagca aaccccggaa
    10441 gcgcagcttc aggcattgca ggataaaatc cgcgctaatc cacaaaacag cgaacaatgg
    10501 gcgttactgg gcgagtacta tctgtggcaa aacgattaca gcaattcgct gctggcgtac
    10561 cgtcaggcgt tgcaactacg tggtgagaac gctgaactgt atgcggcgct ggcgacggtg
    10621 ctttattacc aggccagcca gcatatgacc gcccagactc gcgcaatgat cgacaaagcc
    10681 ctcgcgctgg actctaacga aatcaccgct ctgatgctgc tggcttccga tgcgtttatg
    10741 caggcgaatt acgcgcaagc catcgaacta tggcaaaaag tgatggatct caactcaccc
    10801 cggatcaacc ggacacagct ggtcgagtcg attaatatgg cgaaattgtt gcagcggaga
    10861 tcggattaat catctggtga tgaagattat gttattgagc tgcataaaaa ataatcgaat
    10921 gaacatatgc caaaaataat cactaatcag tattattgca gattaaacaa ataaaaatct
    10981 ttccataaca aatggttatt cattaatcct gacataaact cgcgttatta tgcattaatg
    11041 cagcgaaaag ctctgttgtt aaagggttgc gcaacatacc gcgcaaatga tactgatcat
    11101 aagcgttaaa aaaatctaca aaccaacgca acacaattca tgcctggcag tatgtcacgt
    11161 tctcgcgttt ctgaacgggg aacggcgctc cattgaggaa gttattctga tgaaaaatat
    11221 aaaattcagc ctggcctggc agattctgtt tgctatggtg ctgggcattc tcctgggaag
    11281 ctacctgcac taccatagcg acagccgcga ctggctggtc gtcaatttgc tctctccggc
    11341 gggtgatatc ttcatccatc tgattaaaat gattgttgtg ccgattgtga tctccacgct
    11401 ggtggtgggt atcgcgggtg tgggtgatgc caaacagctc gggcgtattg gcgcgaaaac
    11461 cattatttac ttcgaggtga tcaccaccgt cgccatcatt ttggggatca ctctggcgaa
    11521 cgtcttccag cccggtgccg gggtggatat gtcgcagctg gcgaccgtcg atatctcgaa
    11581 atatcagagc actacggaag cggtacaaag cagttcccac ggcattatgg gcacgatttt
    11641 gtcgctggtg ccgacgaaca ttgtggcgtc gatggcgaaa ggcgaaatgc tgccgatcat
    11701 cttcttctcg gtgctgtttg gtctggggct ttcctccctg cccgcgacgc atcgtgaacc
    11761 gctggtgacc gtgttccgct ccatctctga aaccatgttt aaagtgactc acatggtgat
    11821 gcgttatgca ccggtgggtg tgtttgcgct gattgcggtg acggtggcta actttggttt
    11881 ctcttctctg tggccactgg cgaaactggt gctgctggtg catttcgcca ttctgttctt
    11941 cgcgctggta gtgctgggaa ttgtggcgcg cctgtgcggg ttaagcgtct ggatcctgat
    12001 tcgtattctg aaagatgagc tgattctggc gtactccact gccagctctg aaagcgtact
    12061 gccgcgaatt attgagaaga tggaagccta cggagcaccg gcgtcgatca ccagcttcgt
    12121 ggtgccgacc ggttactctt ttaaccttga tggttcgacg ctgtatcaaa gtattgccgc
    12181 tattttcatc gctcagctgt atggcattga cctgtccatc tggcaggaaa tcattctggt
    12241 gctgacgctg atggtgacct cgaaggggat tgctggcgtg ccgggcgtgt cgtttgtggt
    12301 gttgctggca acgctgggta gcgtaggtat tccgctggaa ggtctggcgt ttattgctgg
    12361 tgttgaccgt atcctcgaca tggcgcgtac tgcgctgaac gtggtgggta atgcgctggc
    12421 ggtgctggtg attgccaagt gggaacacaa atttgaccgc aaaaaggcgc tggcttatga
    12481 gcgtgaagtg ctgggcaaat ttgataaaac tgcggatcaa taattgaaga ttgccggggt
    12541 tatccacccg gcaatgtgtg gatgcctgat gcgacgctgg tgcgtcttat caggcctacg
    12601 ccagacagcg caatagcctg atttagcgtg attttgtagg tcggataagg cgtttacgcc
    12661 gcatccgaca tcaacgcctg atgcgacgct taacgcgtct tatcaggcct accttaaccg
    12721 ttggttaatt tttcaaactc ttcacacccg gtatcaaacc cttccataca gctcaggttc
    12781 aaccagtgca gcgccttttg tttgttcttc tcgataaaac cttcttcacc gtttaagaac
    12841 atcattcccg cccagtactc ggaataaccg gttcgggaaa ttgcagagct gcgtttgaaa
    12901 tactaggttg ccttgtcatc gacggcagag tcgttctcca gatcttccga ggcttttcta
    12961 acagcgaaat cgcctttgga taatccggtt tacccgcttg agtatttacc agaatatgcg
    13021 ccagcgttac ttcaccttct ttactgcccg cttgcgccgc tttctctgca agaacttttg
    13081 cttgtggata gtccagactg cccggattgg tgattttgat ctgcgccaac agcgcgcagg
    13141 catcagcatc accgctgtcg gcggctttct gtgcccaata ttcggctttg ctcaaatcgc
    13201 cggagctaaa ccagctgtcg gcaagaaaat attgtgcgcg tcggtccccg gcctctgctg
    13261 cctttaaata ctggctgcca ggctcggagt cgttggcgtg ggcaaagaat gtcaaaaaca
    13321 acatcaatgc gataattttt ttcattttga taatacgatt gggtagggag taaccagtat
    13381 aaagagttcg aatggataaa aaaacagcct ccgaaaggag gctgtagaaa ggactgtatt
    13441 acgccagtgc cgcttcgcgc aggcgagttt tcaacttgtt gtactcgtca atcacgtact
    13501 gctcggcggc gcgctgatcg gcgatcggct cgacgcgcac ggcgcagtat ttgtattccg
    13561 gcgttttcgt aatcgggctt aagttttcgg taaccagctc gttacaggaa ccaatccacc
    13621 actggtaggt catgtaaatc gcccctttgt tcggacgatc gctgacctgc gcacgggtga
    13681 taattttgcc tttacgcgag tgcacccaaa ccaatgcctc atcttcaata cccagacgtt
    13741 tggcgtcttc ggtattgatt tgtgcgtagc caggttcatc agccagcgcc gccagtgccg
    13801 cacagttacc ggtcatcgaa cggcaagagt agtgaccaac ttcacgcacc gttgacagta
    13861 ccatcgggta ctcgtcggtg agtttgtcga ttggcgctac ccagtcgcag gtgaagaact
    13921 gcgccagacc gttcggggta tcaaacttct ctttaaacag ataagaagtc ccctgatcgg
    13981 catctgaagt atcgcggcaa ggccactgaa tgaagccctg ttcgcccatt ttctcgtaag
    14041 tcgcaccgta gaaatccggg cacagatgac gcaactcatc ccagatctcc tgggtgttgt
    14101 tgtagtgcat cggataaccc atacgggtgg cgatttcact gatgatttgc cagtccgttt
    14161 tcagatccca tttcggttca actgctttga agaaacgctg gaagccacgg tcagccgcag
    14221 taaacacgcc ttcatgctcg ccccacgacg ttgacggcaa aatgacatcc gccgccgacg
    14281 cggttttggt cataaagatg tcctgaacga tgaccagttc cagatcttca aaggctttac
    14341 gtactgccga cagctccgca tcagtttgca gcggatcttc gcccataatg tacgcggcac
    14401 gcacttcgcc atgcgctgcg cggtgcggca gctcgctgat gcgatagccg gtatgagcag
    14461 gcaggctttc cacgccccag gctttggcga atttctcgcg gttagccgga tctttcacgt
    14521 actggtatcc cggatacgta tccggcagcg cgcccatatc gcaggcaccc tgcacgttgt
    14581 tctgaccacg aaccgggttt acacccgcat gcggcttacc gaggttaccg gtcagcatcg
    14641 cgaggctggt cagagaacgc acggtttcca cgccctggta gaactgggtt acacccatgc
    14701 cccacaggat ggcggcgctt ttcgcctggg catacatccg tgccgcctga cgaatctcac
    14761 tggcgctgac gccggtgata tcttcaaccg actccggcgt gtagccttca acgattttac
    14821 gatactcttc aaagccttct gtacgggaag cgacgaacgc tttgtcgtac agattttctt
    14881 caataatgac atggcccatc gcattcaaca gcgcgatgtt cgagccgttt ttcagtgcaa
    14941 tgtgcatgtc agcaatgcgc gcggtttcaa ttttgcgcgg atcgcagacg ataattttcg
    15001 ccccgttacg tttagcgtta attacgtgat tcgccatgat tgggtgggaa tccgccgggt
    15061 tgtacccgaa aacgaacact aaatcggtat tatcaatttc gttaatagca ttgctcattg
    15121 cgccattacc gaccgattgg tgcagacctg caaccgatgg gccgtgtcag acacgagcgc
    15181 agcagtcaac gttattggta ccaataacgg cgcgcgcaaa tttttgcatt acatagttgg
    15241 tttcgttacc cgtaccacgc gaggagccgg tcgtctggat ggcatccgga ccgtacttct
    15301 ctttgatggc gctcaggcgc tcggcaacgt aattcagtgc ctcatcccag gaaacaggtt
    15361 cgagtttgcc gccacgctgg cgacggatca tgggggtttt caggcgcggg gtcaggatct
    15421 gggtatcgtt aatgaagtcc cagccataat aacccttcag acacagggta ccctggttgg
    15481 ttttcccctg cgctgcctcc gcccggacga ttttgccgtt atcgacgacc aggttgattt
    15541 tgcaacctga tgcgcaatag gggcaaaccg tgacgacttt tttcatcggt ctcgctccag
    15601 ttaatcaaat cacgcatacg cgctctcgac tacagtatgc atcttttatg ccacatttta
    15661 tttggggtca ttccctgata ttacgggcac tatttattca aaactctgac gaaaaacagg
    15721 ctgtcgtcag ttttgacgtg acgaaacgaa ataccgcgtg acagccatca cgcggcagac
    15781 attttatttt ttctcgacga cgggagccgc ctgatacccg ccgcccagcg atttcatcaa
    15841 ctgaatgctg tggatcaccc ggcggctgtc cagcatcagt aatgacatct cttcggcaag
    15901 cactggcaac cgggcttcgg tggcctgtaa gcggctggtt aagccgcgct gataggcggc
    15961 ctcggcagcg cgctgggtga agcgcgttgc ttccacgcgt tcagcctgca tttctcgttc
    16021 gtcgttgagc gtttgcagac gcgtgccgtt gacggcaacg tcacgcaccg cgttcagtac
    16081 tgactggttg taacgttcaa tcatcatgtt gctggcggcg cgagtgcctt cgagattggc
    16141 attcaaccgt ccaccgtcaa acagcggcaa tttcagaccc gggatgaagt tgaactggcg
    16201 actggttttt ttgaataagg tatccaggtg gatggagtcc agaccgaaaa acgctttgat
    16261 atcaaagctc gggtagaaca gtgcccgcgc ggaatccacc tgatctaatg acgcctgaac
    16321 ataccagcgc atggcttgca gatccgggcg tctggcgagc aactcataag agagtgtcgc
    16381 cggaatgccg gtctggactc gtggtaatgc caccggtttg atctccggca tatcgctggc
    16441 ccccgcgcca atcaatgcac gcagagattc tcgcgtttcg gtgatttgcc ctttgacggc
    16501 agcaatttgt ttatcgaccg ccagaatctg tgcccgcgcg ccgtggaaag gcacttgtgc
    16561 ttccagaccg tgcgccactt tactctggtg cgctttcacc gcgtaatcaa tcacatcgcg
    16621 agtttgttct aacagatcga gcatctgata gctggcctgc atactgtaat aaagctgcgc
    16681 tacgcccgtg gtcagcgata gctctactgc tgcggtttct gccagcgcgg cattatgcgc
    16741 gccaatggcg gcggcaaccg ctgagcgatg cacaccccac aaatcaagat ccagtccggc
    16801 aaacaaacct actgtggctt ccgtatagta cggcccgtcc atacccagtg agggcgcatc
    16861 catcgcataa gggcttaaaa agccgttcgc cgagacgcgt tggcggttga gcatccctaa
    16921 cgctgcgacc tgtaattgtg aaccggcatc taacaaatcg gcctgggact gcgctttttc
    16981 ttcccgcagt ttcgcttcgg cgagggtgtg tgaaccactt agcgtccgtt ggatcagcgc
    17041 atccagctgc gggtcattga gttgtttcca ccactgcgcc tgcggccagc cggagctggc
    17101 aagatgaata tcgtcggcca gtttgatttg ttccggtttg agctgttgat gaggtgcaga
    17161 atccttacgt accagggcac agccggaaat cagcgtcgtg ctgccgagaa tgctgcacaa
    17221 cagcagacgt gaaagttgac gattgatcat tgcgtggctc cttgtgcctg ttccgtggcg
    17281 ggcgttaatg ccggggctgt ccagtctggc aagcgggcga aaagctggca gacgtgttgc
    17341 tcctgtttta ataaggtggg caggatggcc tgcgaggcgg gtgtctcttc aagcgttatt
    17401 tgaggagaac agctgagtgc ggttgccaga ccggcagcgt atttttccag ggcgtcggca
    17461 aactgacctg ctctgtccgg ctgtagtgcg ttatccagcg cctgcgccga gttccaggtg
    17521 gcatcccagg cgtgaagaag atcgcggccc tgacgaataa ccgtttgcga acgttcaatc
    17581 agtaaggcgc gttcttcgct gtccagttga cgctccagcg ccacgcgttg gcacatctct
    17641 tcacaggcat taaacgccgc atgcagacct atacgaattt gcagataagt gcgcagagcc
    17701 gtgacttcct gctggcgtgg gatccgcatt actttactta gcatacccag cgcaccggct
    17761 agtttttgcg gcagagtgcg cgcttcactt tcaggccaga caaaggtgta aatcaccgcg
    17821 gacaccacgg taccaatgat gatacccagg gcgcgatcgc gaatttccac caggtcgtac
    17881 actgggccaa aaacgttttc gagcgtggcg agcgcgaagg tgacgaccat ctgtgtgccg
    17941 atataagaag agcgttcaga gctggtggca atccatgcgc ccaacaggaa aatcggtgcc
    18001 agcacaaaca gcaattcgac aatattgtcc agccagggca tgaccagtag cgtgaataac
    18061 agcgccagaa tcgcgccgca aaaggccccg ccaaaacgca gcaccatctt ctggtacgac
    18121 gaaccgacat ttggattagc gacgatcacg caggtcagca tacaggtgtg aatgccttcc
    18181 cagtccacgc cgctgtaaaa ggtgtaacag atcaaacagg cgagcaatgt ttttaccgcg
    18241 tagcgtatat agtctggatt ggtaaaagca tcggcgacca ttgatggcgg tttggcggcg
    18301 ggcgttggcg gcgtattcgg gttcatctgg cccagttgta acaacgtctg gcagatattc
    18361 tccaggttac attcccgtgc cgccaccgct tcactttcac tgatccgcca gtcgctttgc
    18421 cagcactgac cttcagcaac ggcatgctgc agcttgttga tttctgaggc taatttttgc
    18481 cgaaattcaa taattgcctg agaatcagca aaagaggtgg gatcgtagcg attcagcgtc
    18541 gagtaaatgt aggttaccgt tgccacgcag ctttgccacc atgcgctttg agttcgccag
    18601 ttggcatcgt ccgcgagaca aaagacattc agtttttgca gcgccagcgc ctctctttca
    18661 atccgcgttt cgggtagcgg tgcgaggctg tctgtcaggt gactaatggc atcatcaagc
    18721 cgatcattaa gcgcctgatg catttgcgaa atggcacgac tgggaaacca cagcacgccg
    18781 attaacgtca tcagcaaggt tggatagagg ccaacaacga tacaccacag cgttaagcgc
    18841 acgaccactt ccggatagtc gagcatggcg gggaaggttt gcccgtaaat ggcgacaatg
    18901 gcgacagcga aaaagaccag tcccagccga tgggtgcgca tcaaaaacat gcagcccatc
    18961 aggatcggcc cggcgatgat caatcggatc aacggttcgc cgtatgacca tttgtagatc
    19021 aaaaacaggc tgccgatctc cagcaccgtg gcaaccacaa acaagatcgc cacaaatttg
    19081 gtgtaaaacg cgttcgactg aataccgtaa aacagcactg ccagcgataa cgccacaaaa
    19141 gggatctcaa aagtcatcga gatcagaatc accagcaggc agcctaccca gagttgcacg
    19201 atctgcggca cgcggccggg tcgccgctcg cttaactctt catgaaagaa cgccagcagc
    19261 ctgaccaccg gtaatggcag ggagttgagc gcgctcatta ttgcggctca agattagcga
    19321 ctgccgaagc gccgatgcgg aacatttccg ggtcaggttt atcgaccatg attttgaccg
    19381 gaaaacgctg ggcaacgcgg acccagttaa tagagcgaga aactttcggc aggccgccca
    19441 gcaccaggcc gccgtcattc ggtagcacac cgtagccaat cgaatccact ttaccctcga
    19501 aggttttgcc gctgtcactc atcaggcgaa tcgttgcggg tgtacctgag cgaatatttt
    19561 tcagatcggt ttcgcggaag ttggcgatca cgtaccagtg acgagtgtcg attagggtaa
    19621 aaatagggcg catggcagaa gcaaattgcc cgacggaggt tttgagggaa atgacccggc
    19681 catcaaacgg cgcgcgaacg gtcgccattt ccagatgcag tttggtcagg gcaatatccg
    19741 cttcgaccgc cgcacgctgg gcaactaata catccacgcc gctgacggcg ctggcggctg
    19801 actgcgcctg taacaatacg gcattaagat ccgcttctgc ggcgcgctgc gccgttcttg
    19861 cacggtcaac atcttccgct gagacaaaac cttctttcag taatggctcg gtgcggcgta
    19921 atgtatctgt ggcctgtttc gcggcggcac gtgctttttc taccgtggca ttaaccgagt
    19981 cggcaccaaa ctgttgggcg tcaacgctac gctgggtgag cataatttgc ttatccagcg
    20041 ccgcgaggga ggcttcagct ttcgccagat tggcttcgta cgggcgcggg tcaatgcgga
    20101 acagcaaatc gccctgtttg actgcctggt tgtcggtgac cgccagttct acaatgcggc
    20161 cgctgacttc cggcaccaca tcaatggtat ctgctgacgc gtaagcgtca ttagttgatg
    20221 gcgcactgtc tacgcgccag ataacgaaaa caagggcaac cagcgccaac gcaaccacta
    20281 acagagcagg gaatttactg cgaggagctt ttttcggcgt actttccatg agcgcgtctc
    20341 aaatagatta gaaaaatgcc agccagaaca gcatggcgta gacagcaaaa agggcggtat
    20401 aaataattcc gacaaatgcc agattgatat ttgcccgctg aataattcgc ctcgtgatta
    20461 gcgtcaaaat aaggctggca atggcgcaga aaaaccagct gggataataa gcgccgatca
    20521 ccgggattgc cggagataat gagcatcccg aaaccatgaa gacgggaatt atccaggctg
    20581 tttttttgag ttgcatcgcc atgcgagaga gaactgttgg catattaaat acatcctgtt
    20641 tgctgcgaac aatatctgta gtgaatatca atatccattg aaggcgtcag tatggctatt
    20701 ttcttgatga ataaaaatag ctttattcag ccaccgcatt cataacttat atattttatg
    20761 tgttaattga ttgtatgtat ttttataata aatgcttttg ggggcttaag cgcccccaaa
    20821 agtgagtggc attaatttgg ggttacgata ttcacccaca aatcgaaatt atccagacag
    20881 gcaataattt cttccagttt cgcgccattg ccaataattt tggctttctt cgcttttacc
    20941 agatccgcca ttttggcttg tcctgtcagc acggcgtgca gatcttcacg gctgatgtag
    21001 aaagaggcgt cggcttgcgg ttgcagtgtt ttacggtagt taagcacgct atcgttcagc
    21061 gtcaggttga ggttatcgcc gttgctcata ttgaagttca ggctgatatt tttacccgca
    21121 gctttcgcgc tatcgaggcg aacggacata aagtcgaaca gcatttcgac cgacatcccg
    21181 cgaatggtgt ccggggaacc ggtggtgccg tggctgaact tatgcacccc ttcgcgcagc
    21241 tctttcgcgc cggtcaggta gaaaccgcgc caggtggcgg actcggcctg atagcccagc
    21301 tgttcaaagt tattcgcttg cagattcttc gcgacctggt cacccgggtt ggcggcaatc
    21361 acctgtttca gcagttctgc cgaccagcgg taatcacctt gcttgttcgc ttcttgcgcc
    21421 aggctgatga cacgggcaga accgcccagc gcctgcacgt aacgtttacc catctccacc
    21481 tgaccatacg gatgcaggtt agccgggtta ccgtcgtaat agccaagata gaagttatac
    21541 accgcgcggg cgttgtggct gacagaaccg taatagccac ggctggccca gttattggca
    21601 agtgcaggcg gcagtttaat catgtcgccg atttcattca tggtgtagcc ctggttcgcc
    21661 aggtgcaggg tctggtcgtg aatgtacttg atagtatcgc gatatttacc aatataatca
    21721 ttgatatgct tattgccccg gaccggccag gtgtgcggca taaacaggac ttccgcgtcg
    21781 ttaccccaca tatccagcgt ttcgttcaga tactcggtcc acttgctggt gtcgcgggtt
    21841 ttcgcgccgc gcagagtgta gaagttgtgc agggtatgcg tggcgttctc ggcggtacac
    21901 agcgctttca gggccggaat atagaagtgc atttcggctg gtgcttcgct acctggggtc
    21961 atcaggaagt caaactccag gccgtcgata atcatcttct caccggtttt ggtgatggtt
    22021 ttgttcggtg cgatgatgct cgggtagccc gatgccagcg ttacgccaag accattgccg
    22081 atgttaccct gagggttatg cgccagcagc aggccgtagg agtaaagtgc acggtggctc
    22141 ataatattac ccgccagtac gttttcgctg atggcttcgt ccataaagcc agcaggggcg
    22201 ataacctgca ctttaccgga tttcacatca gcttcagaga taatgccttt cacgccgcca
    22261 tagtggtcgg tatggctgtg ggtataaata accgcaacaa tcggtttttg cgggcgattt
    22321 tggaagtaaa ggtcaagggc ggcttttgcg ctcggtggcg tcaccagcgg gtcgatgaca
    22381 ataatcccgg tatcaccttc gataaaggtg atgttggaga tatcctgacc gcgaacctgg
    22441 tacattctgt cggtgacttt aaacaggccg gaaataccgt ttaactgcga ctgacgccac
    22501 aggctagggt taacggtttc gggcgcgggc gcattgatat caaatttata atcttccccg
    22561 cgataatatg gtttgccatt agcatcgcgc agaatacctt catccagcag cggagcgata
    22621 aatccacgct gagcgtcgtc aaaatcctga cgatcgctaa acggtaatga tttggcgtaa
    22681 ttctgattaa cctgttgggt atattgagtg gcggctttcg cttcctcttt cgcgttagcg
    22741 gtatttacca tcatgccgct ggcggcagtt aacgcaataa caattctgct caaacggaat
    22801 aaccgagagt tattcatata aatctccatt tatcatttat gtcgtaaata tgtaatccat
    22861 acaaaatacg tcatttaaag ctggggttat cataattggg aatttgcgac tttaataagt
    22921 ggaagtgtga gctgaacgat ccattttatt aggcatttgt gctgaagaga gaaaattacg
    22981 cgaatttatt atctctgtaa ataatatgag gtgttttata tatttattat atatattgta
    23041 cttcggcaaa tactgagcac aatttatcaa tgcaaccggt gtttcttttt aaaaaacgta
    23101 ccggagcaat gggcggtcat gtcgctggca ccgcaggatt ctgcgttgct gtgccagcct
    23161 tttattcatg gtcaatgagt gaggtgattg ataaagacac caggtcgtca gagcgcactg
    23221 attatccgca ttatgccagt gaagttgcac tggcttttgg ttcacgagtg gttggcctcg
    23281 aactggcaaa aatgattgtg gatgcgtggc tgggcgcaca gtacgaaggc ggtcgtcatc
    23341 aacaacgcgt ggaggcgatt acggcaatag agcagcggag aaattgagat tcatccacta
    23401 cttgcatgga tgagtaatga ttaatgtgga tagagtttct ttttgaggtt ggctaatgaa
    23461 acgctttccg ctatttcttt tattcaccct gctcacgctg tccaccgttc cggcccaggc
    23521 cgatattatc gacgacacca ttggcaatat tcagcaggcg attaacgacg cttataaccc
    23581 tgaccgtggg cgagactatg aagattcgcg cgacgacggc tggcagcgtg aagtgagcga
    23641 cgatcggcgc agacaatatg acgaccgccg ccgccagttt gaagatcgcc gcaggcagct
    23701 ggacgatcgc cagcgccagc ttgatcagga gcgtcggcag ctagaagatg aagagcggag
    23761 aatggaagat gagtatgggc gatgaggttg ggtatggagc aggcatcgcc cctcacccca
    23821 atggggagag ggagaaaacc agcgcaatat tcaatatcga gcacaatcgg tcccctcgcc
    23881 cctctgggga gagggttagg gtgagggggc cagcgcgcac attccctctc atcacgccac
    23941 cccaatctcc atcccatcaa atcccgcctc aaaccccgac ggcagtgcgt tttccatcag
    24001 ccacgcatca aactggtggc tgatatgggt cagaatcacc cgtggcgagc ggataacctg
    24061 attcagcgcc agcacggtgt ttaaatcaca gtgactacgt ggcgcatcct cgcgcggcgg
    24121 gtggctgcaa tcaatcacca ttacctgcgg ctgattattg cgtaaaaatt tcagcgtttt
    24181 ttccggcaag cctgcggtgt cagacagcca cgccacccgg ctgtgtgccg tttccagcag
    24241 ataaccgaag gtcagttttg agtggttgag cggcaggggc gtgacctgta acccctgcaa
    24301 atcaaacacc acaaacggtt ccaccgtgtg gctgaaatca agcaggcccg gatgtttaaa
    24361 cagatcgtcg cagccctgtt catccggcgg gccgtaaacc gggatcggat cgcccacgcc
    24421 ccagcgcagc gggaatagcc cctgcacgtg atccatatgg tagtgcgtca gcaaaaactg
    24481 ctggaacgat ccgggcggcc agcgatcggc gagatcgtgc agcccggcgt cgatcagggt
    24541 gattgcgtcg ttaaacttca ctacgccgct gcatggctgg cggcgatact gcggtgagcg
    24601 ccgcgctctg gcgcaggcta cgcactcgca gccccatgcc ggaacgccct gtgcgccgcc
    24661 ggtgccggtg agcgtgaggg tcaggctcat gttacagcgc cttggtgaag cggaagtggc
    24721 tctgctcgta gccttcacgc aggtaaaaac ggtgcgcgtc gtggcgcttc acgttggtgg
    24781 aaagttcggt catttcggcc ccggcctggc gggcttcttc ttctgcccac gccagtaact
    24841 tactgccgac gttcagaccg cacgcctgcg gcatcaccac cagttcctga atttcgccga
    24901 tccagttgac atgatgcaga tgaaactgca aatgcaggcc gatcatgccg acaacttcgc
    24961 catccagcag cgccagatgg tagcgcatgc tcgggtagcg catgctcggg tagcgcatgc
    25021 tcgggtcgcg caggttggcg ttaaagccca cgcgaaacgc gtggtggtca aactccgcct
    25081 gttttagctc acaaatcagc gcgtaaaccg cgtcggtatc gtactgcgtg gccgggcgaa
    25141 gctcacaagc aggcatggtg tttctccttc tgatgaatca gcgtcagcag tgtgtcgacc
    25201 gactggcgca ggctgccgtc attgttgagc gtatggcaat cctgtggagt atagcgggcg
    25261 gcgcgcgcca gccgggcgtt aatttcactg gtgttttcac ggccacggtt tttcaggcgc
    25321 tggcgcagga tctccggcga aacctgtaaa cagacgggca gcagcgccga ttgatagcgc
    25381 gcccgtgcct gcggcaaatg cgcgcgtgaa ccgttgacga ctacgtcgaa tccagcgtgc
    25441 agccagaggt caatctcgat gccgacgcca taatacagac cgttagcgtg ccagcttaag
    25501 gccagcaggt tttgccccgc gcgggtaaaa aactcccgct cactcagggc gatatggttt
    25561 tcacttccgg cgctggcgtc gcgcgtgatg tagcgatgcg ccaccagtaa ctgcgtttgt
    25621 tcccgcaggc ggagttccgc cagcaggctg tctttcccgg agccggacgg ccccattaac
    25681 caaatcagtt ttcccatcat cagaacaccc ttttaccctg acgccagacg tggtcgatat
    25741 gaatgtgatt gccctggcga tgcgccagca ccaggtcagc gcgtttaccc tcgccaatca
    25801 ccccgcgatc ctgaagattc agcgcctgcg ccggattttt ggtcaccagc ctcaccgcct
    25861 gcggtagcgt aaagcggttg ctctcgtcat cggcgacgcg gaacgccgca tccagcaggc
    25921 tggcggggta gtagtcggaa gagaggatat ccagcagacc aagctgcgcc agttcactgg
    25981 ccgccacatt gccggagtgc gagccgccac gcacgatatt tggcgcaccc atcagcacgt
    26041 tcatgccatg cttacgcgag gcttccgccg cttcgaacgt ggtggtaaat tcggcgatca
    26101 cgctgccaag ttggtgggat tcggcaacgt gggcgtgcgt ggcgtcatcg tggctggcga
    26161 gcgcaatttg tcgcgcgcgg cacagggcgg cgatggattc gcgattcggc tgcgaccagc
    26221 gtgcggcgag cgccaattgc tcttcttcgt actgctgcat ctgcgcatcg gtgagggagt
    26281 atttgccctg ataatattcg cgatacttct cgcggttagc gaactggcgc tggcccggtg
    26341 agtggtccat tagcgacacc agcgtcaccg gttcgcgctg aaccagtttt tcaaacagcg
    26401 gcagtgtggt gtgatgcggc agctcgcagc gcaggtgcag acggtgctcg gcgcggttga
    26461 cgccgcgttt ctgcgtctct tcgatggtgt tgatcatctt ctccagattc tccagctgat
    26521 cgccgccgtc gcgcacgtcg ccaatcgcca ccgcgttcag cacggtggtg atgccgcttg
    26581 ccaccatcag cgcgtcgtgg ctgctcatcg ccgaatgggc gggccagtcg actttcgggc
    26641 gcggggtgaa gaatttatcg aggttgtcgg tatgcagctc aatcaggccg ggtagtagcc
    26701 agccaccttc gccgtccatc gcttctggca ggcggctctg gctttcggca aaggcgcgga
    26761 tttcgccatc ctgcacctcc agcgaaccgt gcaccacctc gttttccagc accagcttaa
    26821 cgttattgat aatcatgaag aggctcccat tgggtgcagg cggtcggcga cgtcattacg
    26881 tacagcttcg tcatggaaga tgccgacgat ggctgcgcca cgggctttgg cttcgtgaat
    26941 cagttccacc accgcggcgc tgtttttggc gtccagcgag gcggtaggtt cgtcgagcag
    27001 cagaatgggg tagtcgacga taaagccgcg ggcgatgttg acgcgctgct gttcgccgcc
    27061 ggagaaggtc gatggtgcca ggtgccacag gcgttccggc acgttcaggc gggtgagaag
    27121 acgcgcggct ttagcggcgc aggcttcacg cggaacgccg gtatcgagca gcggctgcat
    27181 caccacttcc agtgctgaga tacgcgggat gacgcgcaga aactggctca cccagccgac
    27241 tgtggttttg cggatttcca ccactttgcg cgctggcgcg gtgaccaggt ctacccactc
    27301 gtcaccgtgt ttgatctgga tttgaccttc gtcgggtaga tagttggcgt acagcgagcg
    27361 cagcagggtt gatttgccgc tgccggagtg accgtggagc accacgcatt cgcctgcgtt
    27421 gacggtgagc gaggcacgtt gtaagacggg caggcgtacg ccgttttgct gatgcaggat
    27481 gaaggtttta ctgacgtttt gtacgttaat catttttcgc ctcgtggttc gggtgtcgga
    27541 tgcgacgctg acgcgtctta tccgacctac ggggagcgca tttgtaggcc ggataaggcg
    27601 tttacgccgc atccggcacc ggctcaattc tgcaaaaccg atgacaccag cagttgtgta
    27661 tacggatggt gcgggtcgtc gagcacgcgg tcggttaacc cactctccac cacttgcccc
    27721 tgcttcatca ccagcaaacg gtccgccagc aggcgggcga cgcctaaatc gtgggtgaca
    27781 atcactaccg cgaggttcag ctccaccacc aggccgcgca gcaggtcgag caggcgtgcc
    27841 tgtaccgaca catccagtcc gccggtcggc tcgtccataa acaccagctt cggatgcgtc
    27901 accaggttgc gggcgatctg caaacgttgc tgcatgccgc cggaaaaggt ggtcggcagg
    27961 tcgtcgatcc ggttggcggg aatttccacc tcttccagcc acttctgcgc ggtggcacga
    28021 atatcgccgt aatgacgtgc cccggtcgcc atcagccgct cgccgatatt gccgcctgcc
    28081 gacacctggc ggcgcaggcc gtcgagcgga tgctgatgca ctacgcccca ttcggtgcgc
    28141 agcaggcgac ggcggtcggc ctcgctcatt gcgtacagcg aacggctctc atagtgaatc
    28201 tccccctgct gcggcgtcag gcgcgcggag attgatttca gcagcgtggt ctttccggag
    28261 ccggactccc cgacaatgcc cagcacttcc cccggccata aatcaaaaga gacatcgcta
    28321 aagcctttgc ccggcgcgta aaggtgggtc aggttattga ccgaaagtaa cggttgattc
    28381 attggttttt tgcctcgctc tgttggcggc aataatcggt atcggagcag acaaacatgc
    28441 ggtttccggc gtcatccagc accacttcat caagatagct gtgggtcgat ccgcagatgg
    28501 cgcatggctc atcccactgc tgaacggtga acgggtgatc gtcgaaatcg agactttcca
    28561 cgcgggtaaa cggcggcacc gcatagatgc gcttctcgcg ccccgcgccg aacagttgca
    28621 gggcgggcat catgtccatt tttgggttat cgaatttcgg gatcggcgac gggtccatca
    28681 cgtagcgccc gttcaccttc accggatagg cgtaggtagt ggcgatatga ccgaagcggg
    28741 cgatatcttc atacagtttc acctgcatca cgccgtactc ttccagcgcg tgcatggtgc
    28801 gggtttccgt ttcgcgcggc tcgataaagc gcagcggttc ggggatcggc acctggaaga
    28861 taatgatctg atcttcggtc agcggcgttt cggggatgcg atggcgcgtc tggataagcg
    28921 tcgcatcgtc cgtacgttca gtggtgttta ccccggtcac gcgcttaaag aagttgcgaa
    28981 tcgacacggc gttggtggtg tcgtctgcgc cctggtcaat caccttcagc acgtcgcttt
    29041 cgccaatcac gctggcggtg agctgaatgc cgccggttcc ccagccgtag ggcatcggca
    29101 tctcgcgccc gccaaacggc acctgataac cggggatcgc caccgctttt aagatggcgc
    29161 ggcggatcat gcgtttggtc tgctcgtcga ggtaggcaaa gttgtagccg ctcagattag
    29221 ccatggttct gctcctgttg cagacgtttg agtagctcca gttcggcctg gaaatcgacg
    29281 tagtggggga gtttgaggtg cgagacaaag cctgcggctt cgacgttgtc ggcatgtgcc
    29341 agcacgaact cttcatcctg cgccgggcct gtcgcgtgct cgccgtactc cggagcctgc
    29401 aacgcacggt caaccagcgc catcgctttg cgctcgctca tgccgaacac cagcccgtag
    29461 ccgcgcgtga agtgcggcgg ctcatccggc gggtcaataa aaccgttgac catttcacac
    29521 tcggtcatca gcagttcgcc gacgttcacc gcaaatccca gctcttccgg cataatcgac
    29581 acgtcgatgt aaccactgcg gatttcgccc gcgaacgggt gattgcgtcc gtaaccgcgc
    29641 tgggtagagt aggccagcgc cagcaaatag ccttcgtcgc cgcgcatcaa ctgctgcaaa
    29701 cgggaagaac gtgaacaggg gtaaactggc ggagtgcggg tgatgtcatc cggctgtgcg
    29761 ccgctatcct cttcaaactt cgccagcccc tgacgcgcca gcaggctgaa aacgtgcggc
    29821 gacggggatt gttcgctgtc tgcggtggtc agcgtcggcg cttcgccgtt tgccagcagg
    29881 gtgaaatcga gcaggcgatg ggtgtagtcg taggttgggc caagcaactg accgccggga
    29941 atatctttat aaaccgctga aatacgccgt tcgagacgca tctccgtggt gtcgagcggc
    30001 tcgcttaccg ccagcttcgc cagcgtggtg cggtaggcgc gtagcaggaa aatcgcttcg
    30061 acgttatcgc cgctggcctg tttcagcgcc agcgccgcca gttcgcggtc ggcaatgccg
    30121 ccttcggtca tcacgcgatc tactgcaaga ttaagctgct gttcaatctg ggcgacgctc
    30181 agttcaggca aatcggtatt gccccggcgt cggctctctt gcagggcgtg ggcggcgtcg
    30241 atctccttct cgcccccttt cacggcaacg tacatcagca cacctccaca tgagtggttc
    30301 gcgggatagc cagcagccgc tcgccgcagg tcaggatcag gtcgatgccg agcgggaacg
    30361 ggtgcgggcg ctcggtgagt tcgtgcagaa tgcactccgg cagctgcgga gcgatcattc
    30421 gttcttcggc aatacccgcg ccagtaaggc gcagcatgcg cccgccgctc aggctgacga
    30481 cctgtaaaat cagcgtcgcg cccgcttccg gcgcaacagc ggtgccgctg gaaagagcgt
    30541 tgagctgttc gctggaaatc gcctcatccg ttaccgcgaa ggtcgccagt tccgactgat
    30601 tgaccagcgg cgcgttggta tgaaaacgca ggctctggct gacgatatcg ttacttaatg
    30661 gcgcggaaag ccacaccggc gtgtcgttat cagccagcgt cagcagcacg ctggtggtgg
    30721 cgatattcag cggctgccag ccgcgtttga gctgatgcag ggcgacaatc acgcccggct
    30781 cgctcatggc ctttaacagg cgacgaaaac tgtgctgggc atcctgcaca ggaagcataa
    30841 aagcggtttc cagggtcatg cgttgtctcc gcgaaccatc gtaaagaagt cgacccggct
    30901 ggcgttcact tcggcctggc gtgcggcaat gcgtgccata cggtcagcgt ccagtggggc
    30961 aataagggtt tctgataagt tttgaaaatg gcgagattgc tgcatcaacg cgtcaatcag
    31021 cgcgcagcgt tcggcgtgct gtttgtcgcg ccccagcacc cagctgtagc cgagggggcc
    31081 gtcagtcagg cgtacggcgg cgcgggtcag cgtggcgtcg ccggcaaaaa agcgttcgcc
    31141 ggtaccgccc attcgcggct gaatctgtac caggccggtt tcggcggtgc ggatcacttc
    31201 atagttggcg gtgatgttca gcgcgttcag gcgggctgcc agttcagccg gttggctgtg
    31261 cgccagcatg gacatccagt gctggcgggt cgcgatatct gcgtgcattc agtgctccat
    31321 agtgaattca atcatgtcgg cgcgcgtcag gctgacggag tactccgccg ggctgctttc
    31381 accgtcacgg tggttaaggg tgcgcacgca cagcagcggc gacatattcg ggatttcaag
    31441 acgctggcac tctttggcct gggcgcggcg ggcgctgatc cgcgtctggc tgcggcgcag
    31501 cgcaatcccg gtttgctcgc gcagaaaatc gtgcagcgag ccgctgtcga agcgttgcag
    31561 cgtcggccaa agggtgaggt ccgcaaagta gtggtcgatt aaacagagcg cgatgccgtt
    31621 gacccggcgc agggtgcgca ggtggatgac gttctccccc tcggttatcc ccagcgcgtc
    31681 agcgacgtga ccagatgccg ggcgcagcac cgacagcagt ttttcgctgg tgggatggct
    31741 gccctgatcc agcaggttct ggctaaaacg cgcctgggcg ttgagcgggt aatcgaacgg
    31801 gcgcatcagc accagcacgc cgacgccctg acggcgctgt acccagcctt tttccaccag
    31861 ttggtcgatg gcgcggcgca gggtgtggcg atttacctca aagcgcgccg ccagctgctg
    31921 ctcggcggga agatagtcgc cgcagcgata gtgttgacga agctcctgct caagttttgc
    31981 ggctatctcc tgatagcgtg ttgggtagct ggtcggatgt gtagacaagt gcatagatat
    32041 caatgcctcg cttatcagat aaagtgctta cgcaaccgtt gagagaggaa atccagcagg
    32101 ctgaccgtga cgatgataag caccatcagg gcgcaggttt gttggaactg aaaaccgcga
    32161 atcgcttccc acagggtgac gccgatcccg cctgcaccga ccatgccgac gacggtcgcc
    32221 gagcggacgt tggattcgaa gcgatagagg gagtaggaga tcagcagcgg cattacctgt
    32281 ggcagcacgc cgtaaaggat ctcttccagc ttgttggcgc cggtggcgcg aatgccttct
    32341 accgggccgg gttcgatcgc ttccaccgct tcggaaagca gcttggagag cacgccggtg
    32401 gtgtggataa atagcgccag cacgccagcg aacgggccga gaccgacggc gaccacgaac
    32461 agcatggcga agaccatttc gttaatggcg cggcaggcat ccatcaggcg gcgaacgggc
    32521 tggtaaaccc accacggcac caggttttcg gcgctcatca gaccgaaggg gatggagaga
    32581 accactgcca gcgcggtgcc ccagacggcg atttgcagcg tgacggccat ttcggtgagg
    32641 taatcctgcc actggctgaa atcgggcggg aagaagtcgg caacgaaggt tgccatgttg
    32701 ccgccgtctt taatcagcgt aagcggggcc atttccgcgc cctgccacga gacgaccagc
    32761 acggcgagaa caacggccca gctcagaagc gagaaccagc tacgcttggg tggggcgatg
    32821 gtgatggttt gcatgtttgg ctccgtttaa tgttttctcc ctctccctgt gggagagggc
    32881 cgggatgagg gcatcagcgt gcgcatttcc ccctcaccct aaccctctcc ctcaagggag
    32941 aggggaccga tcgagcacat tactgcaccg ctttactcac cgaactcatc gcgcttaacg
    33001 cgttgttcag gcggtccaag tcatccagct gcgcctgaat ctcggtggtt ttcgccagct
    33061 tgtcctgctc attcagtcct ttattgcttt ttacgccctg catctcttta aacagtgcga
    33121 gctggcgaat cggcaccagt tgcaggtcgc tggaggcgcg gaacggggcc cagcccaggc
    33181 gttccagcac cgctttctct tccggcgttt ttccgtagtt cataaagaag tcgtagatct
    33241 tgtctttggt ggtttcggag agattcttgc gccagacgat cggatcgcct gggatcagcg
    33301 gcgacttcca gatcaccttc agttctttca gcttctctgg cgcggaggtt ttcagcttgt
    33361 cgaggttttc ggtgttgttg gtggcaacat ccacctgctt gttggcgacg gccagcgcgt
    33421 tggtttcatg cccagcgttg acggtgcgct taaagtcgct ggcggagata ttgtttttgg
    33481 caaagacgta gtaaccgggg acgaggaagc cagaggtgga gttaggatcg tcattgccga
    33541 aggtgagatc tttccgcttc gccagcagat cgttcaggtt gttgatcgga ctatctttgt
    33601 tgacgatcaa cacgctccag taacctggcg atccatccgc cgcgaccgtc tgggcgaaga
    33661 cctggccgtt ggcgcgatcc accgcttcca ttgccgacag gttgccgtac caggcgatat
    33721 ccactttatt gaagcgcatt ccctggataa tgcctgcgta gtctggggca aagaaggcgt
    33781 tcaccttcac gcccagcttc ttctccatat cctgtaagaa tggcgtccat tgcggtttca
    33841 ggttttgctg tgattccgtt gaaataatgc cgaaattcag cgccttttcc tgctcttcgg
    33901 cgtgtgccgg gcttaacagg gtgctgaggc tgaacatgct ggtgaaggcc agcgaggcaa
    33961 ttatcttagc gttcattcgt tttcctcaat gatggggatg tcaggcagct ttcgcgttct
    34021 cttcgatgcg attaatgctg cggtagagat ggtcaaaacg ttcgttatca aactgttggc
    34081 tgctgccgtc gtagaaaacg tgcccctggc gcagggcgac gatgcgttcg cagtagcgca
    34141 gggcgtaatc cacctgatgc agcgtgacga ctacggtgat gccgtcgttc tgattgatgt
    34201 cgcgcagggt gtccatcacg atgcgggcgg attccgggtc cagcgaggcg atgggttcat
    34261 cggccagaat caccttcgcc tgctgcatca gcgcgcgggc aatcgccaca cgctgctgct
    34321 gtccgccgga gagggtggaa acgcgttgat gggcaaaatg caccatgcca acgcgggtca
    34381 gcgcctgtaa cgcgcgttgt ttctgctcgc gggtgaacca gctaaaacag gtgcgccaga
    34441 acggcgtgct gccgagcgcg ccaatcagca cgttctccag tacgctcagg cgattcacca
    34501 ggttgaattg ttggaagatg tagccggtat gggcgcggct tttgcggata tcgcgcgcca
    34561 gacggccttc gcgctggact gtgcggccca gcagctcgat atggctgccg gcggatttat
    34621 cgccggtaat caaaccgctt aagtgacgta aaagtgtgga tttgccggaa cccgacggcc
    34681 caagcagagc caccatttca ctgtgatgaa tgttcagatc aaccgcatgc agcgcttgat
    34741 gctgattgaa ggttttggcg agcttctcga cacggataat cgtttgcatg atgcagcctc
    34801 cctaaaaaag tggctccatc gtggcggatt attgtgacga tttggttaat taaaagtgac
    34861 taacagatga agagttaacg ggaattcgat gacagtgcgg gagggcgggc ctcccggcgg
    34921 gttattgcgt tggttgttgt ttgacgacat taatcatcca cggtacgcca aatttatcgg
    34981 tgactttgcc gaagccatgc gcccagaaag tttcctgcca ggccatttca atttttccgt
    35041 tagcggcaag gttatcaaac cagcgttttc cttcttcgac ctgttgcgaa tcgagcacca
    35101 gcgtaaagcc ggagtagctg gcttttcctg acggtatagc atcgctcatc atgatgtcgc
    35161 ttccggcaat gcgcacgttg gcgtgggcga tggcggtatc gggaaattgc attccggaag
    35221 ggcagttctc ggcgctgtcc tgcgctgatt ttggcatttc gccgaagctg attttataga
    35281 gcagttccgc gcccaacgta cgttgataat aggcaatcgc gtcggaacag ttaccggcaa
    35341 aagagaggta gggacttaac ggcatgatgg tgacctcagt taagagaagc cagttaagtg
    35401 tagttcgaaa tttatacaga tgagagggaa gcctgataag gcgcggtcag cgtcgcatca
    35461 ggcagtcggc atcgttgccg gatgtggcgc gagcgcctta tccggcttac cgatcacaat
    35521 acaatcagtt ctttttcaca aactcagatt tcagtttcat cggaccaaaa ccgtcgattt
    35581 tgcaatcgat gttatggtcg ccttcaacca ggcggatgtt tttcactttg gtgccaattt
    35641 tcagcatcga agagctacct ttcaccttca gatctttaat gatggtaacg ctgtcgccgt
    35701 cagccagcag attgccgtta gcatctttaa cgatcagctc gtcgctttcc tgtgcaggtt
    35761 ctgtgtcgtt ccattcgtag gcacattccg ggcagatgta catgccgtta tcttcgtaag
    35821 tgtattcgga gttgcatttt gggcagtgtg gtaatgacat gtggatttcc tcaaaagtca
    35881 gcagggcaaa agcgccaaaa aacggcagat tgccgaaaaa ggccgcaatt atacacaaaa
    35941 tccctgagtt tgtcgggggt actgctgatt ttagacgacg atcgttttca tttgaaagga
    36001 aacgcaaaaa gaaaataatc tttttgcctc tatttattat ttaagataat gttaatgctc
    36061 tacctgttct ttttttattc acatgatatt tttatctttc tgacgtttta aacgcatcag
    36121 aagacgttat ttattctgat aaaaaacaac acactaaata taaaat
//
LOCUS       DADMJB010000021        35067 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.021, whole genome shotgun sequence.
ACCESSION   DADMJB010000021 DADMJB010000000
VERSION     DADMJB010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 35067)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35067)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35067
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.021"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..4091)
                     /locus_tag="JN078_000947"
     CDS             complement(<1..4091)
                     /locus_tag="JN078_000947"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HAY9040228.1"
                     /translation="MADNPDPSSLLPDVFSPATRDWFLRAFKQPTAVQSQTWHVAARS
                     EHALVIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQ
                     RNLQLPLKGIADERRRRGETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGL
                     SATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASSTGEDSHA
                     GREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVD
                     AAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLEL
                     GIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIVEC
                     MFAGRLENLTPPHNPLDVLAQQTVAAAAMEALQVDEWYSRVRRAAPWKDLPRRVFDAT
                     LDMLSGRYPSGDFSAFRPKLVWNRETGILTVRPGAQLLAVTSGGTIPDRGMYSVLLPE
                     GEEKAGSRRVGELDEEMVYESRVNDIITLGATSWRIQQITRDQVIVTPAPGRSARLPF
                     WRGEGNGRPAELGEMIGDFLHLLADGAFFSGTIPPWLAEENTNANIQGLIDEQRNATG
                     IVPGSRHLVLERCRDEIGDWRIILHSPYGRRVHEPWALAIAGRIHALWGADASVVASD
                     DGIVARIPDTDGKLPDAAIFLFEPEKLLQIVREAVGSSALFAARFRECAARALLMPGR
                     TPGHRTPLWQQRLRASQLLEIAQGYPDFPVILEILRECLQDVYDLPALERLMRRLNGG
                     EIQISDVTTTTPSPFATSLLFGYVAEFMYQSDAPLAERRASVLSLDSELLRNLLGQVD
                     PGELLDPQVIRQVEEELQRLAPGRRAKGEEGLFDLLRELGPMTVEDLAQRHTGSSEEV
                     ASYLENLLAVKRIFPAMISGQERLACMDDAARLRDALGVRLPESLPEIYLHRVSYPLR
                     DLFLRYLRAHALVTAEQLAHEFSLGIAIVEEQLQQLREQGLVMNLQQDIWVSDEVFRR
                     LRLRSLQAAREATRPVAATTYARLLLERQGVLPATDGSPALFASTSPGVYEGVDGVMR
                     VIEQLAGVGLPASLWESQILPARVRDYSSEMLDELLATGAVIWSGQKKLGEDDGLVAL
                     HLQAYAAESFTPAEADQANRSALQQAIVAVLADGGAWFAQQISQRIRDKIGESVDLSA
                     LQEALWALVWQGVITSDIWAPLRALTRSSSNARTSTRRSHRARRGRPVYAQPISPLVS
                     YNTPNLAGRWSLLQVEPLNDTERMLALAENMLDRYGIISRQAVIAENIPGGFPSMQTL
                     CRSMEDSGRIMRGRFVEGLGGAQFAERLTIDRWRDLATQATQTR"
     gene            complement(4184..4831)
                     /gene="rnt"
                     /locus_tag="JN078_000948"
     CDS             complement(4184..4831)
                     /gene="rnt"
                     /locus_tag="JN078_000948"
                     /EC_number="3.1.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease T"
                     /protein_id="HAY9040229.1"
                     /translation="MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITL
                     KMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKV
                     VRKGIKASGCNRAIMVAHNANFDHSFMIAAAERASLKRNPFHPFATFDTAALAGLALG
                     QTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLPAAEEV"
     gene            complement(4934..5341)
                     /gene="gloA"
                     /locus_tag="JN078_000949"
     CDS             complement(4934..5341)
                     /gene="gloA"
                     /locus_tag="JN078_000949"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008500591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HAY9040230.1"
                     /translation="MRLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFV
                     GYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGP
                     VKGGTTVIAFMEDPDGYKIELIEEKDAGRGLGN"
     gene            complement(5422..6519)
                     /gene="nemA"
                     /locus_tag="JN078_000950"
                     /pseudo
     CDS             complement(5422..6519)
                     /gene="nemA"
                     /locus_tag="JN078_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416167.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="N-ethylmaleimide reductase"
     gene            complement(6556..7155)
                     /locus_tag="JN078_000951"
     CDS             complement(6556..7155)
                     /locus_tag="JN078_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416166.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAY9040231.1"
                     /translation="MNKHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGS
                     FYHYFRSKEAFGVAMLERHYTAYHQRLTELLQSGEGNYRDRILAYYQQTLNQFCQHGT
                     ISGCLTVKLSAEVCDLSEDMRSAMDKGARGVIALLSQALENGRENHCLTFCGEPLQQA
                     QVLYALWLGANLQAKISRSFEPLENALAHVKNIIATPAV"
     gene            7258..7497
                     /locus_tag="JN078_000952"
     CDS             7258..7497
                     /locus_tag="JN078_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416165.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1289 domain-containing protein"
                     /protein_id="HAY9040232.1"
                     /translation="MAEQLEFFPVQSPCRGICQSDERGFCRGCFRSRDERFNWNKMSD
                     GEKQEVLRLCRQRLMRKLRANKPASSDEPEQPSLF"
     gene            7546..8442
                     /locus_tag="JN078_000953"
     CDS             7546..8442
                     /locus_tag="JN078_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase family oxidoreductase"
                     /protein_id="HAY9040233.1"
                     /translation="MVQRITIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDL
                     GVTTVDHADIYGGYQCEAAFGEALKLAPHLRERMEIVSKCGIATTAREENVIGHYITD
                     RDHIIKSAEQSLINLATDHLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNF
                     TPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRPMAWSCLGGGRLF
                     NDDYFQPLRDELAVVAEELNAGSIEQVVYAWVLRLPSQPLPIIGSGKIERVRAAVEAE
                     TLKMTRQQWFRIRKAALGYDVP"
     gene            8523..9044
                     /gene="sodC"
                     /locus_tag="JN078_000954"
     CDS             8523..9044
                     /gene="sodC"
                     /locus_tag="JN078_000954"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Cu-Zn] SodC2"
                     /protein_id="HAY9040234.1"
                     /translation="MKRFSLAILALVVATGAQAASEKVEMNLVTSQGVGQSIGSVTIT
                     ETDKGLEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAESAGGHLDPQNTGKHE
                     GPEGAGHLGDLPALVVNNDGKATDAVITPRLKSLDEIKDKALMVHVGGDNMSDQPKPL
                     GGGGERYACGVIK"
     gene            complement(9045..10652)
                     /locus_tag="JN078_000955"
                     /pseudo
     CDS             complement(9045..10652)
                     /locus_tag="JN078_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004016165.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
     gene            complement(10733..11042)
                     /locus_tag="JN078_000956"
                     /pseudo
     CDS             complement(10733..11042)
                     /locus_tag="JN078_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011378749.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(11056..11913)
                     /locus_tag="JN078_000957"
     CDS             complement(11056..11913)
                     /locus_tag="JN078_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310380.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HAY9040235.1"
                     /translation="MSIKTIKYFSIIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEK
                     VSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKAN
                     NEANRRRHLSQNFISAEELDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAPVSG
                     WVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKT
                     LRGHVSSIGRAIYDQSVESDSSLIPDVKPNVPWVRLAQRVPVRFALDKVPGDVTLVSG
                     TTCSIAVGQ"
     gene            complement(11979..12152)
                     /locus_tag="JN078_000958"
     CDS             complement(11979..12152)
                     /locus_tag="JN078_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000670993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1656 domain-containing protein"
                     /protein_id="HAY9040236.1"
                     /translation="MKFMLNATGLPLQDLVFGASVYFPPFFKAFAFGFVIWLVVHRLL
                     RGWIYAGDIWHPL"
     gene            12353..12787
                     /gene="slyA"
                     /locus_tag="JN078_000959"
     CDS             12353..12787
                     /gene="slyA"
                     /locus_tag="JN078_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416159.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator SlyA"
                     /protein_id="HAY9040237.1"
                     /translation="MESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLP
                     PDQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISE
                     MEAVINKTRAEILHGISAEELEQLITLIAKLEHNIIELQAKG"
     gene            complement(12834..13301)
                     /gene="slyB"
                     /locus_tag="JN078_000960"
     CDS             complement(12834..13301)
                     /gene="slyB"
                     /locus_tag="JN078_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein SlyB"
                     /protein_id="HAY9040238.1"
                     /translation="MIKRVLVVSMVGLSLVGCVNNDTLSGDVYTASEAKQVQNVSYGT
                     IVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTVGGGTGRSLATAAGAVAGGVAGQGV
                     QSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSPGQRVVLASNGSQVTVSPR"
     gene            13575..14684
                     /gene="anmK"
                     /locus_tag="JN078_000961"
     CDS             13575..14684
                     /gene="anmK"
                     /locus_tag="JN078_000961"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HAY9040239.1"
                     /translation="MKSGRFIGVMSGTSLDGVDVVLATIDEHRVAQLASLSWPIPVSL
                     KQAVLDICQGQQLTLSQFGQLDTQLGRLFADAVNALLKEQNLQARDIVAIGCHGQTVW
                     HEPTGVAPHTLQIGDNNQIVARTGITVVGDFRRRDIALGGQGAPLVPAFHHALLAHPT
                     ERRMVLNIGGIANLSLLIPGQPVGGYDTGPGNMLMDAWIWRQAGKPYDKDAEWARAGK
                     VILPLLQNMLSDPYFSQPAPKSTGREYFNYGWLERHLRHFPGVDPRDVQATLAELTAV
                     TISEQVLLSGGCERLMVCGGGSRNPLLMARLAALLPGTEVTTTDAVGISGDDMEALAF
                     AWLAWRTLAGLPGNLPSVTGASQETVLGAIFPANP"
     gene            14782..15111
                     /gene="mliC"
                     /locus_tag="JN078_000962"
     CDS             14782..15111
                     /gene="mliC"
                     /locus_tag="JN078_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416156.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C-type lysozyme inhibitor"
                     /protein_id="HAY9040240.1"
                     /translation="MSMKKLLLICLPVLLTGCSAFNQLVEHMQTATLEYQCDEKPLTV
                     KLNNPRQEVSFVYDNQLLHLKQGISASGARYTDGIYVFWSKGDEATVYKRDRIVLNNC
                     QLQNPQR"
     gene            15170..15826
                     /gene="pdxH"
                     /locus_tag="JN078_000963"
     CDS             15170..15826
                     /gene="pdxH"
                     /locus_tag="JN078_000963"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HAY9040241.1"
                     /translation="MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACE
                     AKLADPTAMVVATVDEHAQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLL
                     FPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKF
                     LELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
                     "
     gene            15955..17229
                     /gene="tyrS"
                     /locus_tag="JN078_000964"
     CDS             15955..17229
                     /gene="tyrS"
                     /locus_tag="JN078_000964"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HAY9040242.1"
                     /translation="MASSNLIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTA
                     DSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVD
                     KIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQR
                     LNREDQGISFTEFSYNLLQGYDFACLNKQYGVVLQIGGSDQWGNITSGIDLTRRLHQN
                     QVFGLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFT
                     FMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLQAAKRITECLFSGSLSA
                     LSEADFEQLAQDGVPMVEMEKGADLMQALVDSELQPSRGQARKTIASNAITINGEKQS
                     DPEYFFKEEDRLFGRFTLLRRGKKNYCLICWK"
     gene            17291..18151
                     /gene="pdxY"
                     /locus_tag="JN078_000965"
     CDS             17291..18151
                     /gene="pdxY"
                     /locus_tag="JN078_000965"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310372.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal kinase PdxY"
                     /protein_id="HAY9040243.1"
                     /translation="MKNILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNHT
                     QYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAA
                     NPQAKYFCDPVMGHPEKGCIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNNV
                     EEAVLAARELIAQGPQIVLVKHLARAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQP
                     VGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTKAMQEYELQVVAAQDRIAK
                     PEHYFSATKL"
     gene            complement(18195..18800)
                     /gene="gstA"
                     /locus_tag="JN078_000966"
     CDS             complement(18195..18800)
                     /gene="gstA"
                     /locus_tag="JN078_000966"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione transferase GstA"
                     /protein_id="HAY9040244.1"
                     /translation="MKLFYKPGACSLASHITLRESGKDFTLVSVDLMKKRLENGDDYF
                     AVNPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVNSISRYKTIEWLNYIA
                     TELHKGFTPLFRPDTPEEYKPTVRAQLEKKLQYVNETLKDEHWICGQRFTIADAYLFT
                     VLRWAYAVKLNLEGLEHIAAFMQRMAERPEVQDALSAEGLK"
     gene            complement(18906..20408)
                     /gene="dtpA"
                     /locus_tag="JN078_000967"
     CDS             complement(18906..20408)
                     /gene="dtpA"
                     /locus_tag="JN078_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/tripeptide permease DtpA"
                     /protein_id="HAY9040245.1"
                     /translation="MSTANQKPTESVSLNAFKQPKAFYLIFSIELWERFGYYGLQGIM
                     AVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY
                     ALVAWSGHDAGIVYMGMAAIAVGNGLFKANPSSLLSTCYEKNDPRLDGAFTMYYMSVN
                     IGSFFSMIATPWLAAKYGWSVAFALSVVGLLITIVNFAFCQRWVKQYGSKPDFEPINY
                     RNLLLTIIGVVALIAIATWLLHNQEVARMALGVVAFGIVVIFGKEAFAMKGAARRKMI
                     VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGLAVEPEQYQALNPFWIIIGSP
                     ILAAIYNKMGDTLPMPTKFAIGMVMCSGAFLILPLGAKFASDAGIVSVSWLVASYGLQ
                     SIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGANLIGGYVAGMMAVPDNVTDP
                     LMSLEVYGRVFLQIGVATAIIAVLMLLTAPKLHRMTQDDAADKAAKAAVA"
     gene            complement(21020..21655)
                     /gene="nth"
                     /locus_tag="JN078_000968"
     CDS             complement(21020..21655)
                     /gene="nth"
                     /locus_tag="JN078_000968"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HAY9040246.1"
                     /translation="MNKAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATD
                     VSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG
                     EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVE
                     EKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEKVDI"
     gene            complement(21655..22350)
                     /locus_tag="JN078_000969"
     CDS             complement(21655..22350)
                     /locus_tag="JN078_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit E"
                     /protein_id="HAY9040247.1"
                     /translation="MSEIKDVIVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLA
                     TTLVLTLTNLTISTLRHWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFI
                     PLIVTNCIVVGRAEAFAAKKGPALSALDGFSIGMGATCAMFVLGSLREIIGNGTLFDG
                     ADALLGSWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAGKYLIDERMKKRRTEAA
                     AERALPNGETGNV"
     gene            complement(22354..22974)
                     /gene="rsxG"
                     /locus_tag="JN078_000970"
     CDS             complement(22354..22974)
                     /gene="rsxG"
                     /locus_tag="JN078_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxG"
                     /protein_id="HAY9040248.1"
                     /translation="MLKTIRKHGITLALFAAGSTGLTAAINQMTKTTIAEQASLQQKA
                     LFDQVLPAERYNNALAQSCYLVTAPELGKGEHRVYIAKQDDKPVAAVLEATAPDGYSG
                     AIQLLVGADFNGTVLGTRVTEHHETPGLGDKIELRLSDWITHFAGKKISGADDAHWAV
                     KKDGGDFDQFTGATITPRAVVNAVKRAGLYAQTLPAQLSQLPACGE"
     gene            complement(22978..24036)
                     /gene="rsxD"
                     /locus_tag="JN078_000971"
     CDS             complement(22978..24036)
                     /gene="rsxD"
                     /locus_tag="JN078_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxD"
                     /protein_id="HAY9040249.1"
                     /translation="MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTL
                     VQILLASVSTLLAEALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGT
                     VFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQ
                     VIFSGHTASGADMNTLHLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGA
                     GWQWVNLAWLAGGLWLLWQKAIRWHIPLSFLVTLALCATLGWLFSPETLAAPQIHLLS
                     GATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFAVLLANIT
                     VPLIDYYTRPRVYGHRKG"
     gene            complement(24037..26259)
                     /gene="rsxC"
                     /locus_tag="JN078_000972"
     CDS             complement(24037..26259)
                     /gene="rsxC"
                     /locus_tag="JN078_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxC"
                     /protein_id="HAY9040250.1"
                     /translation="MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFV
                     IPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSA
                     LAELSVIIDADGEDCWIPRDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQG
                     GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKP
                     QAISMLRAVLADSNDISLRVIPTKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNV
                     GTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRHLLNDARFCPSADQM
                     VIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLL
                     PQQLYWFSKGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEE
                     KRAAEAKARFEARQARLEREKAARLERHKSAAVQPAAKDKDAIAAALARVKEKQAQAT
                     QPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVEAAIARA
                     KARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAIE
                     AAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAVPEEQVDP
                     RKAAVEAAIARAKARKLEQQQTNAEPEEQVDPRKAAVAAAIARAQAKKAAQQKVVNED
                     "
     gene            complement(26252..26830)
                     /gene="rsxB"
                     /locus_tag="JN078_000973"
     CDS             complement(26252..26830)
                     /gene="rsxB"
                     /locus_tag="JN078_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxB"
                     /protein_id="HAY9040251.1"
                     /translation="MNAIWIAVAAVSLLGLAFGAILGYASRRFAVEDDPVVEKIDEIL
                     PQSQCGQCGYPGCRPYAEAISCNGEKINRCAPGGEAVMLKIAELLNVEPQPLDGEAQE
                     LTPARMVAVIDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTH
                     CISLQPVAETPDSWKWDLNTIPVRIIPVEHHA"
     gene            complement(26830..27411)
                     /gene="rsxA"
                     /locus_tag="JN078_000974"
     CDS             complement(26830..27411)
                     /gene="rsxA"
                     /locus_tag="JN078_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017456621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxA"
                     /protein_id="HAY9040252.1"
                     /translation="MTDYLLLFVGTILVNNFVLVKFLGLCPFMGVSKKLETAMGMGLA
                     TTFVMTLASICAWLIDTWILIPLNLIYLRTLAFILVIAVVVQFTEMVVRKTSPVLYRL
                     LGIFLPLITTNCAVLGVALLNINLGHNFLQSALYGFSAAVGFSLVMVLFTAIRERLAV
                     ADVPAPFRGNAIALITAGLMSLAFMGFSGLVKL"
     gene            complement(27488..27928)
                     /locus_tag="JN078_000975"
     CDS             complement(27488..27928)
                     /locus_tag="JN078_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707526.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2569 domain-containing protein"
                     /protein_id="HAY9040253.1"
                     /translation="MTTTTPQRIGGWLLGPLAWLLVALLSTTLALLLYTAALSSPQTF
                     QTLGGQALTTQILWGVSFITAIAMWYYTLWLTIAFFKRRRCVPKHYIIWLLISVLLAV
                     KAFAFSPVEDGIAVRQLLFTLLATALIVSYFKRSSRVKATFVNP"
     gene            complement(28014..28229)
                     /gene="ydgT"
                     /locus_tag="JN078_000976"
     CDS             complement(28014..28229)
                     /gene="ydgT"
                     /locus_tag="JN078_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription modulator YdgT"
                     /protein_id="HAY9040254.1"
                     /translation="MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAAD
                     HRRAELVSGGRLFDLGQVPKSVWHYVQ"
     gene            complement(28502..28627)
                     /gene="blr"
                     /locus_tag="JN078_000977"
     CDS             complement(28502..28627)
                     /gene="blr"
                     /locus_tag="JN078_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division septum protein Blr"
                     /protein_id="HAY9040255.1"
                     /translation="MNRLIELTGWIVLVVSVILLGVASHIDNYQPPEQSASVQHK"
     gene            28840..29880
                     /locus_tag="JN078_000978"
     CDS             28840..29880
                     /locus_tag="JN078_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310359.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HAY9040256.1"
                     /translation="MSDNIRVGLIGYGYASKTFHAPLIAGTPGLELAVISSSDETKVK
                     ADWPTVTVVSEPKHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLS
                     QARELDALAKSLGRVLSVFHNRRWDSDFLTLKGLLAEGVLGEVAYFESHFDRFRPQVR
                     DRWREQGGPGSGIWYDLAPHLLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSY
                     PQRRVILHGTMLAAAESARYIVHGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRD
                     GVLTRVEGEERVEETLLTVPGNYPAYYAAIRDALNGDGENPVPASQAIQVMELIELGI
                     ESAKHRATLCLA"
     gene            complement(29915..30916)
                     /gene="add"
                     /locus_tag="JN078_000979"
     CDS             complement(29915..30916)
                     /gene="add"
                     /locus_tag="JN078_000979"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HAY9040257.1"
                     /translation="MIDTTLPLTDIHRHLDGNIRPQTILELGRQYNISLPAQSLETLI
                     PHVQVIANEPDLVSFLTKLDWGVKVLASLDACRRVAFENIEDAARNGLHYVELRFSPG
                     YMAMAHKLPVAGVVEAVIDGVREGCRTFGVQAKLIGIMSRTFGEAACQQELEAFLAHR
                     DQITALDLAGDELGFPGSLFLSHFNLARDAGWHITVHAGEAAGPESIWQAIRELGAER
                     IGHGVKAIEDRALMDFLAEQQIGIESCLTSNIQTSTVAELAAHPLKTFLEHGIRAGIN
                     TDDPGVQGVDIIHEYTVAAPAAGLSREQIRQAQINGLEMAFLSAEEKRALREKVAAK"
     gene            complement(31019..32191)
                     /gene="malY"
                     /locus_tag="JN078_000980"
     CDS             complement(31019..32191)
                     /gene="malY"
                     /locus_tag="JN078_000980"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional maltose regulon transcriptional
                     repressor/cystathionine beta-lyase MalY"
                     /protein_id="HAY9040258.1"
                     /translation="MFDFSKVVDRHGTWCTQWDYVADRFGTADLLPFTISDMDFATAP
                     CIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSE
                     LIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCNMGKLEAVLAK
                     PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWS
                     NVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTA
                     HIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNID
                     DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR"
     gene            complement(32201..33793)
                     /locus_tag="JN078_000981"
     CDS             complement(32201..33793)
                     /locus_tag="JN078_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS maltose transporter subunit IICB"
                     /protein_id="HAY9040259.1"
                     /translation="MTAKTAPKVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSS
                     HDVITLIPVLGNPVLQAIFTWMSKIGSFAFSFLPVMFCIAIPLGLARENKGVAAFAGF
                     VGYAVMNLAVNFWLTNKGILPTTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWM
                     LHERFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINS
                     AGDFGPMLFGTGERLLLPFGLHHILVALIRFTDAGGTQEVCGQTVSGALTIFQTQLSC
                     PTTHGFSESATRFLSQGKMPAFLGGLPAAALAMYHCARPENRHKIKGLLISGLIACVV
                     GGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNTDGNIIDFVVFGILHG
                     LSTKWYMVPVVAAIWFVVYYAIFRFAITRFNLKTPGRDSEVASSIEKAVAAAPGKSGY
                     NVPAILEALGGADNIVSLDNCITRLRLSVKDMSLVNVQALKDNRAIGVVQLNQHNLQV
                     VIGPQVQSVKDEMAGLMHTVQA"
     gene            33968..34996
                     /locus_tag="JN078_000982"
     CDS             33968..34996
                     /locus_tag="JN078_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mal regulon transcriptional regulator MalI"
                     /protein_id="HAY9040260.1"
                     /translation="MATAKKITIHDVALAAGVSVSTVSLVLSGKGRISTATGERVNAA
                     IEELGFVRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLHG
                     GKDGEQLAQRFSLLLNQGVDGVVIAGAAGSSDDLRRMAEEKAIPVIFASRASYLDDVD
                     TVRPDNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSD
                     WVLECTSSQKQAAEAITALLRHNPTISAVVCYNETIAMGAWFGLLKAGRQSGESGVDR
                     YFEQQVSLAAFTDATPTTLDDIPVTWASTPARELGTTLADRMMQKITHEETHSRNLII
                     PARLIAAK"
BASE COUNT         8786 a         9008 c         9124 g         8149 t
ORIGIN      
        1 cgcgtttgcg tggcttgtgt cgccagatcg cgccatcggt caatagtcag acgttcagcg
       61 aattgcgcgc cacccagacc ttctacaaaa cgacctcgca taattcgccc ggagtcttcc
      121 atacttcgac aaagcgtttg catcgatgga aacccgccag ggatattttc ggctatcacc
      181 gcctgacgac tgatgatgcc gtagcggtcg agcatatttt ccgccagcgc cagcatcctt
      241 tcggtatcgt ttagtggctc cacctgcaat aacgaccagc gtccagccag atttggtgtg
      301 ttgtaagata ccagcggcga gatgggttgc gcatagacag gacgtccacg acgagcccgg
      361 tgactgcggc gagttgaggt gcgtgcgttg gaactgctgc gggtgagggc gcgtaacggt
      421 gcccaaatgt cgctggtgat gacgccttgc cagaccagcg cccataacgc ctcttgcagg
      481 gcagagagat caaccgattc gccgattttg tcgcgtatcc gttggctgat ttgttgtgca
      541 aaccaggctc ctccgtcagc cagaacagcg actatcgctt gttgcagcgc cgaacgattc
      601 gcctgatccg cttcggcggg agtgaacgat tctgcagcat atgcctgtag atgcagtgcc
      661 accaggccgt catcttcacc cagttttttt tgccccgacc agataaccgc accggttgcc
      721 agtaattcat cgagcatttc tgacgaatag tcgcgtacgc gggcaggcag gatctggctt
      781 tcccagagtg aggcgggtaa accgactccg gcaagctgtt cgatcacccg catcacgcca
      841 tctacgccct cataaacgcc tggcgatgtt gaggcaaaga gcgccgggct accatcggtg
      901 gcgggtaata cgccctgacg ttccagcagc aatcgcgcat aggtcgtggc tgcaacggga
      961 cgcgtcgctt ctctggcggc ttgcagcgag cgcaaacgca gacgacgaaa tacttcatcg
     1021 ctcacccaga tgtcttgttg cagattcatc accagaccct gttcacgcag ttgctgaagc
     1081 tgctcttcga caatggcaat accgagacta aactcatgag ccagttgttc agccgtgacc
     1141 agagcatgag cccggagata gcgcagaaag aggtcgcgaa gcgggtaact gactctatgt
     1201 aaataaatct ctggcaatga ctctggtagt cgtacgccga gggcatcacg cagcctggcg
     1261 gcatcatcca tacaggcaag acgctcctgt ccgctaatca tcgctgggaa gattcgtttt
     1321 actgcaagaa gattttccag atacgacgca acctcttcac tgctgcctgt atgccgttgc
     1381 gccaggtctt caacggtcat tggccccagt tcgcgcagca ggtcgaacaa tccttcttca
     1441 cctttcgctc ttctgccagg agccagtcgt tgcaactctt cttccacctg gcgaatgacc
     1501 tgcgggtcga gtaattcccc cggatcgacc tgtccgagta gattgcgcag taactcgctg
     1561 tccagcgaca gtacggatgc ccggcgctct gccagcgggg cgtcgctctg gtacataaat
     1621 tccgcgacat agccgaacaa taaacttgtg gcgaaaggcg agggcgtagt ggtcgttaca
     1681 tcggatattt gaatttcgcc accgttcagg cgacgcatca aacgttccag tgcgggaaga
     1741 tcataaacat cttgcagaca ttcgcgtagg atttcgagaa tgaccggaaa atctggatat
     1801 ccctgagcga tttccagcaa ctgactggcg cgcagccgtt gttgccaaag cggggtgcga
     1861 tggcccggag tgcgccccgg cattaataat gcccgcgcgg cgcattcgcg aaaacgggcg
     1921 gcgaaaagtg ccgagctgcc taccgcctcg cggacaattt gcagcaactt ttctggttca
     1981 aacaaaaaaa tcgcggcgtc gggcaattta ccatcagtgt caggaatgcg cgcaacaatg
     2041 ccgtcatcac tggcgaccac agacgcgtca gcgccccata gggcatgtat tcgcccggca
     2101 atcgccagcg cccagggttc atgcacccgt cttccatagg gagagtgcaa aataatacgc
     2161 cagtcgccaa tttcatcacg gcaccgttcg aggaccagat ggcgactccc cggaacgatg
     2221 cccgtcgcgt tgcgttgctc gtcaatcaac ccctgaatat tggcgttcgt attttcttct
     2281 gccagccacg ggggaatagt cccggaaaag aacgcgccat ccgccagtaa atgaagaaaa
     2341 tcgccgatca tctcgcctaa ttcagccgga cgtccgttac cttcaccacg ccagaagggg
     2401 agccgggcag aacgacccgg agcaggagtc acaatcacct gatcgcgggt gatttgctgg
     2461 atccgccatg aggtagcgcc gagagtgata atgtcgttca cccgcgactc atataccatc
     2521 tcctcatcca gttcacccac ccgccgcgaa ccggcctttt cttcaccttc gggtaataac
     2581 acgctataca tgccacgatc cggaatggtg ccgccgctgg taaccgccaa caattgagcg
     2641 ccaggtcgga cggtcaatat cccggtctcc ctgttccaga ccagtttggg gcgaaaagca
     2701 gaaaaatcgc cagagggata gcgcccggaa agcatatcca gcgtggcgtc aaaaacacgt
     2761 cttggcagat ctttccacgg tgcggcacgg cgtacgcggg agtaccattc gtctacctgt
     2821 aatgcctcca tcgccgcggc ggcaacggtt tgctgcgcaa ggacgtcgag tggattatgc
     2881 ggcggtgtca ggttttccag cctgcctgcg aacatacact ctacaatgac tgcggaatcg
     2941 actaagtcac gccgggtacg agggaaaaac agccctttag atacaccgcc aacctgatgt
     3001 ccggcgcgac caatgcgttg taacccactg gcaacagaaa gcggcgttgc cacctgaatc
     3061 accagatcca ctgcgcccat atcaatcccc agttcgagac tggaggttgc gaccacgcag
     3121 cgtaactcac ccgatttcag cgcctgctcg gtgattgctc gttgttcttt agagacggag
     3181 ccgtggtgtg agcgggcaat aaaaacgtcg ctactttgta cacggttaga ggttgcgccg
     3241 gaggtcgact cgaaatgggc cgcatcaacg gcgatagacg gggaacgctg taagcgtgcg
     3301 gcgtaaagct catttaatcg tgccgtcagt ttttccgcca gcccacgtga attagtaaag
     3361 acaatggtcg agcgatggcg caacacttca tcaaggatac ccgtttcaat atatggccag
     3421 atggagcctt cccggccggc atggctgtct tcgccggtgc tgctggcgac cgatgagaca
     3481 tcatccatat tggcgaccgg tacgacaatt cgtatctgcg gatggcgcat tgcgggcggg
     3541 ttgactacag taaccgggcg atcgccacca agaaaggctg ccacatcgct ggctgagcgc
     3601 acagtggcag aaaggccaat tcgctgtgct gaggtgtgga gcagcgcatc gagccgctcc
     3661 agacttaacg ccagatgcgc accacgttta ctgcccgcta ccgcgtggac ttcatcaata
     3721 attaccgttt cgccgcgccg ccgccgttca tcggcaatac ccttcaacgg gagctgcaag
     3781 ttgcgctgaa cgtcggtgcc cagagctttt atcggtgaaa tatagaggat gcgtgaggtt
     3841 ttacgcttat gcgcctcgcg ggtatcttcg ccgccttcgc ggaagagccg atcgagggcg
     3901 tagagaaatg ctgccagcgt tttcccggag ccggtcggtg caatcaccag cgcatgttcg
     3961 cttcgcgccg ccacatgcca ggtttgcgac tggacagcgg tcggctgttt aaaggcgcga
     4021 agaaaccagt cgcgggtcgc cggtgaaaac acgtccggca ggagcgatga agggtctgga
     4081 ttatctgcca ttaacgctat tccccgtgaa tatcatgcag gatgcgtgga atagcctcac
     4141 tatagatgcc tgaatcattg catgtcatca ggcatcgact cgattacacc tcttcggcgg
     4201 caggtagcgg ccagcctccc agacgtttcc agcggttgac gatttcacaa aacagcacag
     4261 cagtgcgttc ggtgtcgtac agcgcggagt gcgcctgggt gctgtcgaag tccatgccag
     4321 cggtctggca agcctttgac aatacggttt gtccgagtgc cagcccggcc agtgcagcag
     4381 tgtcaaaagt ggcgaaaggg tggaacgggt tacgtttcag tgaggcgcgt tctgcggcgg
     4441 ctatcataaa gctgtgatca aaattggcat tgtgcgccac cataatggcg cggttacagc
     4501 cgctcgcttt aataccttta cgtacaactt taaaaatttc gtgcagcgcc tcgtattcgc
     4561 tgaccgcgcc acgatcggga tcgttcgggt caatgccgtt gaaggcgagg gcttctggtt
     4621 gcaaatttgc gccgacaaat ggttcgacgt ggaaatgtaa tgtggtgtcc ggcatcagcc
     4681 agccttgttc atccattttc agggtgatgg cggcaatctc aagcagcgca tcggttttgg
     4741 cgttaaatcc ggctgtttca acatcgatca caacaggata aaaaccacga aaacggtcgc
     4801 acagaccggt aagttgagcg ttatcggaca tctgattctc ttaatacgga taaattgcag
     4861 cgcgcattat gacaaatatt acttgtcgat gcagtaaaga tgcgggcgcg atgagttcac
     4921 gcccggcagg agattagttg cccagaccgc gaccggcgtc tttctcttcg attaactcaa
     4981 ttttgtaacc gtccggatct tccataaacg cgataaccgt agtaccgcct tttaccggac
     5041 ccgcttcacg ggtcacgtta cccccgtttt gacggatttt ttcgcacgct tcagcggcgt
     5101 tatctacgct aagcgcgatg tgaccataag cagtgccgag ttcgtattta tccacgcccc
     5161 agttgtaggt cagttcaatc accgcttctt cggtttccgg gccgtagcca acaaacgcca
     5221 gtgagtattt gtattccggg ttttcgctgg tacgcagcag tttcatgccc agcactttgg
     5281 tataaaaatc gatggagcgt tgcaaatcgc caacgcgcag catggtatga agaagacgca
     5341 tctttttatc ctcaaaatgg ctaacagatt caaaatgttg ttttagtata gcggcggctt
     5401 tacgccgctc gcaatgttgg attacaacgt cgggtaatcg gtatagcctt ccgcgccgcc
     5461 accgtagaaa ctttcggcac gctgtgggtt aagctcagct ttgcgctgca agcgggcgac
     5521 cagatccggg ttcgcaatcc agtcacgacc aaatgccacc gcatcaatta accctttgcc
     5581 gatcagcgtt tcagcttttt ctactgtgta tgcacctgcg ccgataatcg gaccgtggaa
     5641 acgggcgcgt actttttcgc ggaacgcatc agtatacggt tcaccccccg cccaatctgg
     5701 ttctgacata tgcagataag caatgccgcg tttacccagt tgttcaatca gatacagtgc
     5761 atcggcttct tcattcgggc cgttatccgt gttctggaaa gtaccgattg gcgaaatgcg
     5821 aatgccaatg cgatcggcac cccattcttc aatcccggca tcgaccactt ccagtaccag
     5881 acgtgcgcga ttttccacgc tgccgccgta ctgatcggta cgatggtttg aagaaggaga
     5941 aaggaactga tgcagcaaat aaccgtgagc agagaggagc tctaccagat caaaaccggc
     6001 ttcacgcgcg ttagcaatgg cctgacggaa atcattgacg atacctggaa tctcttctag
     6061 ttcaagcgca cgcggcatgg atgtttcaac acggatcgcc tgaccatttt catcgcgcag
     6121 agaagtacgt gttcccgcgc taagtgctga aggcgctacc ggtgcctgac cgccaggttg
     6181 caggctggcg tgagaaatgc gtccggtgtg ccacagctac acggccatat gaccattttc
     6241 agcatgaacg ccagcggtga tttttttcca tgcggcaatt tgctccggac tatggatgcc
     6301 aggcgcacct gcatatcctt ttacctgggc agaaatttgc gtggcttcac taataatcaa
     6361 accggcactg gcacgttggc gatagtattc cgccatcaac ggggtaggaa tgtcacccgg
     6421 ttcaatactg cgcagacgcg tcagcggtgc cataaaaata cggtttgccg ccgtgatcgc
     6481 gcccactttc agtggggaat acagtttttc agatgacata aaggctcccg gtcgtctggt
     6541 gataaaaaat gcctgctaaa cggcaggcgt cgcaataatg ttttttacat gggccagcgc
     6601 gttttccagt ggctcgaaac tgcgcgaaat tttggcctgc agattcgcac ccagccatag
     6661 tgcgtaaagc acttgtgcct gttgtagcgg ttcgccacaa aaggttaaac aatggttctc
     6721 acggccattt tccagcgcct gagagagcag ggcgatcacg ccgcgagcac ctttatccat
     6781 cgcgctgcgc atatcttctg acagatcgca cacttcggca gagagtttta ctgtcaggca
     6841 accactgatg gttccatgtt ggcaaaactg gttcagtgtt tgctggtaat aagccagtat
     6901 gcggtcgcgg tagttacctt cgccggattg cagcaactca gtcagtcgct ggtgatatgc
     6961 ggtgtaatga cgctcaagca tggcaacgcc aaacgcttct ttagagcgaa agtagtgata
     7021 gaaggaccct ttcggcactt cagcggtttt tagtaattcg cttagcccca tcccggtgaa
     7081 tccacgttgc aggcaaagtt gctcgcccgt cgccaggaga tgttcgcgag tatcatgttc
     7141 ggtgtgtttg ttcatgcgtt ggagtgtagt agaccagtcg gtctagtgca agcaaagttg
     7201 ctactttgga cattaacagc ttcaataatg gtaataatct tatctgagga gggcgaagtg
     7261 gcggagcaat tagagttctt tcccgtccag agcccgtgcc ggggaatttg ccagtctgac
     7321 gaacgcgggt tttgtcgcgg ctgttttcgt agtcgggatg agcgttttaa ctggaataaa
     7381 atgagcgatg gcgaaaaaca agaggtgctg cgcctttgtc ggcagcgatt aatgcgcaaa
     7441 ttacgcgcaa ataagccagc gtcatcagac gaaccggagc aaccatcact cttttgaacc
     7501 taatcttgcg tatactcctc tcatatctga taagaggaag cgattatggt tcagcgtatt
     7561 actattgcgc cgcaaggccc ggagttttcc cgttttgtga tgggctactg gcgattgatg
     7621 gactggaata tgtccgcccg ccagctggtc agttttattg aagagcatct ggatctcggc
     7681 gtgaccaccg tggaccatgc tgatatttat ggtggctatc agtgcgaagc ggcgtttggc
     7741 gaggcactga aactggcacc tcacctgcgt gaacggatgg aaatcgtcag taaatgcggt
     7801 atcgcgacga ccgcgcgtga agaaaacgtc attggtcatt acatcactga ccgcgatcac
     7861 atcattaaga gcgccgaaca gtcgctaatt aatctcgcga ccgatcatct ggatctgctg
     7921 ttaatccacc gaccagaccc gttaatggat gccgatgaag tggcggacgc gttcaaacat
     7981 ctgcatcaga gcggcaaagt gcgtcatttt ggcgtatcga actttacgcc tgcgcaattt
     8041 gccctgttgc aatcacgtct gccgtttacc cttgccacta atcaggtgga aatatccccg
     8101 gtgcatcagc cgttactgct ggatggcacg ctcgaccaac tacaacaact gcgtgttcgt
     8161 ccgatggcgt ggtcctgcct tggtggtggt cgtctgttta atgatgatta tttccagccg
     8221 ctgcgtgatg aactggctgt ggtggcagag gagttaaacg cgggctcgat tgaacaggtg
     8281 gtttacgcct gggtattacg tttaccatcg cagccgctgc caattatcgg ttcaggtaaa
     8341 attgagcgcg tacgggcagc tgtcgaagca gaaacactga aaatgacccg tcaacaatgg
     8401 tttcgtattc gtaaagcggc actggggtac gacgtaccgt aagcactttt aggaatagcc
     8461 gccgttcaaa aatgtgtcac tggtttacac ttattcagga atgcacaatg aacggaggtc
     8521 ctatgaaacg ttttagtctg gctattctgg cgctggttgt tgcaaccggc gcacaagctg
     8581 ccagtgaaaa agtcgagatg aacctcgtca cgtcgcaagg ggtagggcag tcaattggta
     8641 gcgtcaccat tactgaaacc gataaaggtc tggagttttc gcccgatctg aaagcattac
     8701 cccccggtga acatggcttc catattcatg ccaaaggaag ctgccagcca gccaccaaag
     8761 atggcaaagc cagcgccgcg gaatccgcag gcgggcatct tgatccacaa aataccggta
     8821 aacatgaagg gccagaaggt gccgggcatt taggcgatct gcctgcactg gtcgtcaata
     8881 atgacggcaa agctaccgat gccgtcatca cgcctcgtct gaaatcactg gatgaaatca
     8941 aagacaaagc gctgatggtc cacgttggcg gcgataatat gtccgatcaa cctaaaccgc
     9001 tgggcggtgg cggtgaacgc tatgcctgtg gtgtaattaa gtaattaaga ggcctgcgta
     9061 ccttgcggtg gtgcttgctc aagttgcgaa agcgagcagt acagccgcca gacaattgcc
     9121 gccagctcac gggcggcagg ttgatgatga cgggcaaggc tgtcgcaaat ccgctgtaat
     9181 tcttcaagtg tggccgccag tgatttttgc tgaacgccac gctcactcat cactccccgc
     9241 aacagtgaaa tacagttatc ccgtactcgc gataacggat cggaacgcga ttcccagtcg
     9301 cgcaattgcc agacaacatg agaacagttc agcagcacta caccccagcg taataaccaa
     9361 cggcgagcca gcgcatcctg gctgttactc aactgactga cgtgatgata agtgagcgat
     9421 tcaaattcgc tttcactcag tgttggatgg cggcttagct gatcgacaaa atcccggcgc
     9481 agcgcgcgaa tatggcggcg gcttttacga gcatccgatc ctggacgcag aatggcgaac
     9541 gctagccaag ccagcgcaac gccaacgatt tttgccagat tatcgttaag aaagtcagca
     9601 aaatcataca ccgggggatt agtgacagcg ataaacgaac ccataaaaac aatcagttgc
     9661 ccccacagtg cggcaaattt gggcatctgc aatttaagaa gctgcattgt cgccagcagt
     9721 ggaaagagaa acagtaaaaa ttgccacaga tcgctaatct ggaccatcag gccaaatttg
     9781 accacaaagc tgaatagcga aagtaacacc agcgtgcgca tcagcagtga caacgactta
     9841 aacggtgctg cgacggcgga gtagagtacg cagctaattg ctgccagcgt taatgcattg
     9901 gcaccggcat cctattgcga tgcaatactc catgcgccaa tcatcatcaa cgtacaaaat
     9961 gtacgcagcc cgctccacat agcttcggcg ttgtcggtat gacgagccag agcggatgtc
    10021 cgtgcgagtc tggcatgatc atctacaccg ctttgcagac gatgtaattc ctgactactt
    10081 tgcagataaa ggcggcaaaa ataacgtagt cgctgccaga aggcgacgtg ccggtagtcg
    10141 gcgacgttgg tcgggcgtag cggggcgata atacgtgcga cggtgtaagc atctgtttgc
    10201 gaactggcga gcgccgtcag caattgttcg agaatttctc gcgtggcacc tggcggtgag
    10261 ggccagttga gcaacatacg tcgcaggctg gagatgacac tggtcatacg taattgctgg
    10321 tggagtagcg cattaaggcg cgcgttttgc tggcgaaaac gatagtggct ccagaaagcc
    10381 tggatacgca gcaaattcat ggtcagtatc tgcccaatcc ccccctcatg tgctgcacga
    10441 atggcatcgt ttgtttcagg ctgccagagt aaactggcat gttccagtaa tcgggcgtgc
    10501 atgtttttca atgcggttaa aagggctgta gcatcggaac tgctaggcag gatcatcatc
    10561 atcatgccgc cgcacaaaat accgactatc acctcgcaaa cgcgcgcctg agcgatatcc
    10621 tacagctggc tggcctcagt aatattaacc atcggaaagg cgatgatggc agccgtgtag
    10681 ccgccagttg aaatgcatac gcgacgttat tcgtgaagtg cgcacaggcc caggtacaaa
    10741 agccaagcca cgccgacatg ctcaatagaa aaaaccacgg ctcattgagc gtatgcccgg
    10801 caagaagcag tgccgcaatg gctcccagta aactgccagc gatgcgtccg aggcttttgc
    10861 tgatgacacc gccaacggtg ggaaagctaa ccactgcagc cgaggtcatc gcccaatagg
    10921 gttcatccag attcaaataa taggcaaccg tcagcgccag acacatggca atggtattgc
    10981 gtaacgcata acgccattgc gccagcgtgg ccttgaacca gggcaaattg cgcaaggacc
    11041 atgacgatgc gttcattatt gacctacggc aatgctacag gtggtgcccg acaccagcgt
    11101 gacatcgcct ggaactttat ccagcgcaaa gcggacggga acgcgttggg cgagacgaac
    11161 ccaggggacg ttaggtttca catccggaat aaggcttgag tcactttcaa cgctttgatc
    11221 ataaatcgcc cgaccgatac tggaaacgtg accccgtaac gttttgttat cactatagag
    11281 ggtaatttgt gctggtgcac cttcgcggat atggcgcaac ttggtttctt caaaataacc
    11341 aatgacgtaa aacgagtggc tgtcgacaag ggcaaacagc ggtttcccgg tgtcagcgta
    11401 atcgccgatg cgggtagtga ggttagtcac ccaaccactc accggggcgc gaatttccgt
    11461 ttgcgccagt tgccattgtg tctgtttcag cgtggcctgt gcggcattaa cactggcctg
    11521 catcgcttta acattgaggt tagcggtatc gagttcttcg gcagaaataa aattttgtga
    11581 gagatgacga cgacgattcg cttcgttatt ggcttttgcg aggtcagatt gcgctttcgc
    11641 cagctgagcc tgtgcgttca gctcggcgat ctgaaagggc gttttatcga tcgtgagcag
    11701 aagatccccc gcgttaacca gttggttgtc ttttatattc agctcaacaa tacgtcccga
    11761 cacctgtggg gtgatagaaa ccttttctgc gcgtattttc ccgtcgcgtg tccacggaga
    11821 ttgcatgtaa taattccaca gccaccatcc ggcaagaacc gcaactatcg ctacaataat
    11881 tattgagaaa tacttaattg ttttaattga catagttacc acgcaatcag tattgccaga
    11941 gcaaggcaaa cgcaaatcgc aaacagcgat aaatccattt acaagggatg ccagatgtca
    12001 ccggcgtaga tccagccacg aagcaggcgg tgtacgacaa gccagatgac gaatccaaac
    12061 gcgaaggctt tgaaaaacgg aggaaaatag acggacgcac cgaacaccag atcttgtaag
    12121 ggcaatcctg ttgcattgag cataaacttc acaaagtaga ttcctttacg accgaatata
    12181 ttgcgttaga ttaataaata ttctttaagt gcgaaaaatt tacgcgcaat ttctgaaaaa
    12241 tatgtctgac ggtaaccaaa tgcagcaata catttgtttt agcaataaaa ttgctgcaca
    12301 ctattctaaa agccgcataa tatcttagca agctaattat aaggagatga aattggaatc
    12361 gccactaggt tctgatctgg cacggttggt gcgcatatgg cgtgctctga tagaccatcg
    12421 cctgaaaccg ctggagttaa cacaaaccca ttgggttacg ttacacaata tccatcagtt
    12481 acctccagac cagtcgcaaa ttcaactggc aaaagcgatt ggcatcgagc agccatcact
    12541 ggtccgtact ctggaccaac tggaagaaaa agggttaatt tcgcgtcaaa cttgtgccag
    12601 cgatcgtcgg gctaaacgta ttaaactgac ggaaaaggca gagccactga tcagcgaaat
    12661 ggaagctgtt attaacaaaa cccgcgcgga aatattacat ggcatctccg cagaggaact
    12721 ggagcaactg attacgctca tcgcaaaact tgagcataat atcattgagt tacaggccaa
    12781 agggtgaaat gaagggggcg tgtggtcagt aacctgacca cacgcaaact tatttagcgc
    12841 ggagaaacgg tcacctgact gccattgctg gccagtacga cacgttggcc cggagagaaa
    12901 cgagtgttgc cttgtttctg taccaccatg atggtattac catcgtcttt acgaatttcc
    12961 agctcgacac cctgcgtttt gttcattgca ctctgtacgc cctgaccagc tacgccacct
    13021 gcaacagcgc ctgctgcagt agccagagaa cgcccggttc cgccaccaac agtattcccc
    13081 aggaaaccac caagaacagc accgccaatt gcaccgataa cgttggaatc atcaccgccc
    13141 tgaatctgta ccggacgtac gttaacgatg gtgccatagc tgacattctg tacttgtttc
    13201 gcttcagaag cggtataaac atcccctgac agggtgtcgt tattaacaca accgacaaga
    13261 gacagaccta ccattgaaac aaccaatacg cgtttaatca ttgaaaaatc tcctgttcac
    13321 catgaaacgc cacgcaagca tccctcatgg tcaaagtata tggcatatgt gaatccatgg
    13381 ttacatgttc taccaaatat gagcaaatca taatgaaagt aggatcaacc aattataaac
    13441 aaaacattca tgatgattat tgatttgaag ataatgtttt actaccaacg gtaaaaatcg
    13501 gtcattccgc atggtattca cgaaaagttt atgtttgagt ggggcgcaaa cgtcagattg
    13561 aaaaaggatg aactatgaaa tcgggccgct ttattggcgt tatgtcaggc accagccttg
    13621 atggtgttga tgttgtgttg gcgacaatag atgaacaccg ggtcgcacag ctggcaagct
    13681 tgagctggcc gatcccggtg tctctgaaac aggctgtact ggatatttgc cagggccagc
    13741 agcttacact ttcgcagttt ggacagcttg atactcaact cgggcgactt tttgctgatg
    13801 cggtcaatgc cttgcttaag gaacaaaacc tgcaggcgag agatatagtt gcgatcggct
    13861 gtcacggtca aaccgtctgg catgaaccga cgggcgtggc accacacact ttacagattg
    13921 gcgataacaa tcaaattgtg gcacgcaccg gaattacggt tgtcggtgat tttcgccgtc
    13981 gcgatattgc cttgggagga caaggcgcac cgctggtacc tgcgttccat catgccttgc
    14041 tggctcaccc aaccgagcga cgaatggtgc tcaatattgg cggcatcgcc aatctgtcac
    14101 tgctcattcc tgggcagccg gttggcggct acgataccgg tcctggtaac atgctgatgg
    14161 atgcctggat ctggcgtcag gccggtaaac cttacgataa agatgccgag tgggcacggg
    14221 cgggtaaagt tattctccca ctgctgcaaa atatgctcag cgacccatat ttctcgcaac
    14281 ctgcaccgaa aagcaccgga cgcgaatact ttaactacgg ctggctggag cgccatttac
    14341 gccattttcc gggtgttgat ccccgtgatg ttcaggccac actggcagaa ctcaccgccg
    14401 tgaccatttc tgaacaagtt ttgttgagcg gtggctgcga acgattgatg gtatgtggtg
    14461 gaggtagtcg taatccgcta ctcatggcgc gtctggcggc attactgcca ggcacagaag
    14521 tcaccaccac cgatgccgtt ggcattagtg gcgatgacat ggaagcattg gctttcgcct
    14581 ggcttgcctg gcggacgctg gcgggattac caggaaatct gccttccgtc actggcgcaa
    14641 gccaggagac ggtactgggg gctattttcc ctgctaaccc gtgatatcag agttaactga
    14701 atttttctta ccgcgtctgc cgttacactt ggaacgttag ggagggcgta ttgccctcca
    14761 gaccaggaaa gtcttcggga aatgtctatg aaaaaactgt tactgatctg tttgccggtg
    14821 cttctcaccg gctgtagcgc gttcaatcaa ctggttgagc acatgcaaac cgctacgctg
    14881 gaataccagt gtgatgaaaa accgttgacg gtcaaactga ataatccgcg ccaggaagtc
    14941 agttttgttt acgataatca actactgcat ctcaaacagg gcatttcagc gtctggtgca
    15001 cgttacactg acggaatcta tgttttctgg tcgaaaggcg atgaagcgac tgtctataaa
    15061 cgcgaccgca tcgtattgaa taactgtcag ttacaaaatc cacagcgttg agatttttcc
    15121 aggggcggcg cacaatagcg tcacccactg acaatccgta aagaaaacca tgtctgataa
    15181 cgacgaattg cagcaaatcg cgcatctgcg ccgtgaatac accaaaggcg ggttacgccg
    15241 tcgcgatctt cccgccgatc cattaaccct ttttgaacgt tggctctctc aggcgtgtga
    15301 agccaaactg gcagacccta ccgcgatggt ggtcgctacc gtggatgaac atgctcagcc
    15361 ttatcaacgc atcgttttac tcaaacatta cgacgaaaaa ggcatggtgt tttacaccaa
    15421 cctcggtagc cgtaaagcac atcaaattga aaataatccg cgcgttagcc tgctgttccc
    15481 gtggcatacc cttgaacgcc aggtgatggt gatcggtaaa gcagaacgac tttcgactct
    15541 cgaagtgatg aaatattttc atagccgccc gcgtgatagc cagattggtg catgggtttc
    15601 gaagcagtcc agtcgcattt ctgcccgcgg tatccttgaa agtaaattcc tggagctgaa
    15661 gcagaagttt caacagggcg aagtgccatt gccgagcttt tggggcggtt ttcgcgtcag
    15721 ccttgaacag attgagttct ggcagggcgg tgagcatcgc ctgcatgacc gctttttgta
    15781 ccagcgagaa aatgatgcgt ggaagattga tcgtcttgca ccctgaaaag atgcaaaaat
    15841 cttgctttaa tcgctggtac tcctgattct ggcactttat tctatgtctc tttcgcatct
    15901 ggcgaaaagt cgtgtaccgg caaaggtgca gtcgttatat acatggagat tttgatggca
    15961 agcagtaact tgattaaaca attgcaagag cgggggctgg tagcccaggt gacggacgag
    16021 gaagcgttag cagagcgact ggcgcaaggc ccgatcgcgc tctattgcgg cttcgatcct
    16081 accgctgaca gcttgcattt ggggcatctt gttccattgt tatgcctgaa acgcttccaa
    16141 caggcgggcc acaagccggt tgcgctggta ggcggcgcga cgggtctgat tggcgacccg
    16201 agcttcaaag ctgccgagcg taagctgaac accgaagaaa ctgttcagga gtgggtggac
    16261 aaaatccgta agcaggttgc cccgttcctc gatttcgact gtggagaaaa ctctgctatc
    16321 gcggcgaaca actatgactg gttcggcaat atgaatgtgc tgaccttcct gcgcgatatt
    16381 ggcaaacact tctccgttaa ccagatgatc aacaaagaag cggttaagca gcgtctcaac
    16441 cgtgaagatc aggggatttc gttcactgag ttttcctaca acctgttgca gggttatgac
    16501 ttcgcctgtc tgaacaaaca gtacggtgtg gtgctgcaaa ttggtggttc tgaccagtgg
    16561 ggtaacatca cttctggtat cgacctgacc cgtcgtctgc atcagaatca ggtgtttggc
    16621 ctgaccgttc cgctgatcac taaagcagat ggcaccaaat ttggtaaaac tgaaggcggc
    16681 gcagtctggt tggatccgaa gaaaaccagc ccgtacaaat tctaccagtt ctggatcaac
    16741 actgcggatg ccgacgttta ccgcttcctg aagttcttca cctttatgag cattgaagag
    16801 atcaacgccc tggaagaaga agataaaaac agcggtaaag caccgcgcgc ccagtatgta
    16861 ctggcggagc aggtgactcg tctggttcac ggtgaagaag gtttacaggc ggcaaaacgt
    16921 attaccgaat gcctgttcag cggttctttg agtgcgctga gtgaagcgga cttcgaacag
    16981 ctggcgcagg acggcgtacc gatggttgag atggaaaagg gcgcagacct gatgcaggcg
    17041 ctggtcgatt ctgaactgca accttcccgt ggtcaggcgc gtaaaactat cgcctccaat
    17101 gccatcacca ttaacggtga aaaacagtcc gatcctgaat acttctttaa agaagaagat
    17161 cgtctgtttg gtcgttttac cttactgcgt cgcggcaaaa agaattactg tctgatttgc
    17221 tggaaataat gcattaagtg gaaaggggga gtgagaaatc actccccctg gtttttatac
    17281 agggaacatg atgaaaaata ttctcgctat ccagtctcac gttgtttatg gtcatgcggg
    17341 taacagtgcg gcagagtttc ctatgcgccg cctgggcgcg aacgtctggc cgctgaacac
    17401 cgttcaattt tctaatcaca cccagtacgg caaatggact ggctgcgtga tgccgcccag
    17461 ccatttaacc gaaattgtgc aaggcattgc cgccattgat aaattacaca cctgtgatgc
    17521 cgtgttaagt ggctatctgg gatcggcgga gcagggtgaa catatcctcg gtatcgtccg
    17581 tcaggtgaaa gccgcgaatc cgcaggcgaa atatttttgc gatccggtaa tgggtcatcc
    17641 ggaaaaaggc tgtatcgttg caccgggtgt cgcagagttt catgtgcggc acggtttgcc
    17701 tgccagcgat atcattgcgc cgaatctggt tgagctggaa atactctgtg agcatgcggt
    17761 aaataacgtc gaagaagcgg ttctggcagc gcgcgaactc attgcgcaag ggccacaaat
    17821 tgtgttggtt aaacacctgg cgcgagctgg ctacagccgt gaccgttttg aaatgctgct
    17881 ggtcaccgcc gatgaagcct ggcatatcag ccgtccgctg gtggattttg gtatgcgcca
    17941 gccggtaggt gttggtgatg tgacgagcgg tttactgctg gtgaaactgc ttcagggggc
    18001 aacgctgcag gaggcgctgg aacatgtgac cgctgcagtc tacgaaatca tggtgaccac
    18061 caaagcaatg caggaatatg agctgcaagt ggtggctgct caggatcgta ttgccaaacc
    18121 agaacattac ttcagcgcaa caaagctctg aaatatctca tttcggccca caacgacctg
    18181 tgggccgatg gctattactt taagccttcc gctgacagtg cgtcttgtac ttccggacgt
    18241 tcagccatac gttgcataaa tgctgcaatg tgctctaacc cttccagatt cagtttcacc
    18301 gcgtatgccc agcgcagaac cgtaaacaga taggcatcag caattgtaaa tctttgcccg
    18361 cagatccagt gctcatcctt cagtgtctcg ttcacatatt gcagcttctt ctccagctgc
    18421 gcgcgaactg tcggtttgta ctcttccggt gtatcagggc gaaacagagg tgtgaaacct
    18481 ttatgcagct cggtggcgat gtaattcagc cattcgatgg ttttatagcg ggaaatactg
    18541 tttaccggtg ccagcaactg gcggtcgggg acgctgtcgg caagatactg cataatcgct
    18601 acgccttccg tcagcaaagt accgtcatcc agcagcaatg caggcacctg ccccttaggg
    18661 ttaacggcaa agtaatcgtc accgttttcg agacgttttt tcattaaatc cacactgacg
    18721 agggtaaaat cctttccgct ctcacgcagg gtgatatggg aagcgagaga gcaggcaccc
    18781 ggtttgtaga acaatttcat cggtaactcc ttttgtctgt ggtttaaagt atggtagtgc
    18841 gttgctgaac aaaaaaaaag ccgctaacga aaagttagcg gcttgtaaaa gagtttccct
    18901 aaattttacg ctacagcagc tttcgccgct ttgtctgcag cgtcatcctg cgtcatacgg
    18961 tgcagtttag gcgcggtcag cagcatcagt actgcaataa tggcagtagc gacaccaatc
    19021 tgcaagaata cgcgaccata aacttccagt gacatcagcg ggtcggtaac gttatccggc
    19081 acagccatca tacccgcaac ataaccacca atcaggtttg caccggcagt ggtcaggaac
    19141 cagctaccca taatgaagcc catcagacgc tgcggaacga gttgtgcaac cattgccaga
    19201 cccagaccag agatcatcag ttccccgatg ctctgcaggc catagcttgc gaccagccag
    19261 cttacagaca cgataccagc gtcagacgcg aatttcgcac ccagcggcag aatcaggaac
    19321 gcaccagaac acatcaccat gccgattgca aacttggttg gcatcggcag ggtatcgccc
    19381 atcttgttat agatagcggc cagaatcgga ctaccgatga tgatccagaa cgggttcagt
    19441 gcctgatact gctcaggttc tacggccaga cccagaatgg agtgctcaac gttacgaatc
    19501 gcaaagaagt tcagtgacgt tggcatctgg ctgtacagca cgaagaagat aatggcttcg
    19561 agcatcagga tgaaggcaac gatcatttta cgacgcgcag cacctttcat cgcgaaggct
    19621 tctttaccga agataaccac gataccgaag gcaacaacgc ccagcgccat acgcgcaact
    19681 tcctgattgt gcagcagcca ggtggcgata gcgatcagtg ccacaacacc aataatggtc
    19741 agtagcaggt tacggtagtt gataggctcg aagtctggtt ttgaaccgta ctgtttaacc
    19801 cagcgttggc agaaggcgaa gttaacgata gtgatcagca ggcctacaac gctcaacgca
    19861 aacgcaacac tccagccgta tttcgcggcc agccacggcg tagcaatcat agagaagaaa
    19921 gagccgatgt tgacggacat gtagtacatg gtgaatgcac cgtccagacg cgggtcgttt
    19981 ttctcatagc atgtagaaag cagagaagac gggttagctt taaacaggcc gttaccgacc
    20041 gcaatagccg ccatacccat ataaacgata ccggcgtcgt gaccagacca ggcaaccaga
    20101 gcataaccaa tcgccagcac aatagcgccg agcataatta cgcgtttagt acccagtacc
    20161 ttgtcaccta accagccgcc gatagcgacc agaccataaa ccagggcact aaaggaagag
    20221 aaaagggtga ttgaatccgc ttcagacata cccagttgtt taaccaggta aacagccata
    20281 attccttgta ggccgtaata accaaaacgt tcccataact caatcgagaa gatgagatag
    20341 aacgccttcg gttgtttgaa agcgttcaaa ctgacgcttt cagttggttt ttggtttgca
    20401 gtggacactt ttacctcttt attttacatc ccatattaac gggggtgctt tctcgcgtta
    20461 tgtctaaaaa acatacgcgc aattgttata gtgggagggg aaacggcagg taatgttcac
    20521 tatcttgcac tttcagacaa gtcctttgta ataatctgtt acatataact gaggcgggga
    20581 attcaaccat tccgggaaat gttatccagc gttaaatttt tcaaaaaacg taacggcaga
    20641 ttttttcact gcactgagag gggggtgatg gcttaacggc gatatgttct gctatttagc
    20701 gtttttacta gtgagatagt ccagtttctg aaaaatagcc agtgtaatgt tttgtaggtc
    20761 aatatttgtt gcgtgtgtaa atttaaatga ttttaacctg attcttgcaa tgtttttaca
    20821 ttgcgacagc atcgtgatct tgatcacgaa tgaatagaaa atttcgctat taaaaaaaca
    20881 attaacctgc atttttggtt atccgcaaac ggattacctg atgataacgc taagcaatgg
    20941 catcattcac gttaaaaaga tgttttaaaa gaggataaag aaaggttatc aatggggtaa
    21001 tcggtgttac cccttttctt cagatgtcaa ctttctcttt gtattcacaa agatcttcaa
    21061 taatacaaga gccacagcgg ggcttgcggg caatgcaggt ataacgcccg tgcaggatca
    21121 accaatggtg gcagtcgact ttaaactctg ccggaaccac tttcagtagc ttttcttcta
    21181 cctgttcaac gtttttcccc ggcgcaaatt gagtacgatt acaaacgcgg aaaatgtgcg
    21241 tgtcgacagc aatagtcggc cagccgaatg cagtgtttaa tacgacgttg gctgttttac
    21301 gacctacgcc gggcagggct tcaagcgcag cacgatcttc cggaacctcg ccattatgct
    21361 gctccagtaa gatacggcag gttttgatga tattttctgc tttgctgtta taaagcccaa
    21421 tcgttttgat ataggtttta accccttcaa cgcccagttc aagcatcgct gcaggcgtat
    21481 tcgccaccgg gtagagtttc gccgtcgcct tattaacact gacatcggtc gcctgagcgg
    21541 aaagcagtac ggcaatcagc aattcaaaag gcgaactgaa attaagctcg gtggtgggat
    21601 gaggattgtt ctcacgcagg cgagtgagga tctccaggcg ttttgctttg ttcatcagac
    21661 attccctgtt tcaccgtttg gcaatgcacg ttcggcagct gcttcagtac ggcgcttttt
    21721 cattctttca tcaatcaggt attttcctgc cagcatcagt cccaggccaa taaatgcacc
    21781 tggtggcagc atcgccagca ggaaagggga gtcggtgtgg aaaatctcca cgcgtaatac
    21841 ttttgcccag ctacctaaca gcgcatctgc accgtcaaac aatgtgccat tgccgataat
    21901 ttcgcgtagt gaacccagca cgaacatggc gcaggttgcg cccataccaa ttgaaaagcc
    21961 gtccagtgcc gaaagcgccg gacctttttt ggcggcgaag gcttcagcgc ggcccacaac
    22021 gatacagtta gtgacaatca gcggaataaa aatccctaat gattgataca ggccaaaggc
    22081 gtaggcgttg atcagcatct gtacagcgct gaccaccgag gcgatgatca tcacgtaaat
    22141 gggaatgcgg atctcggctg gcgtccagtg acgcagcgtc gaaatggtca ggttggtcag
    22201 cgtcagtacc agcgtagtcg caagtcctaa acccagagca ttagtggcag tggacgtgac
    22261 cgccaacaga ggacaaaggc cgagcaactg gaccagcgca gagttgtttt tccacaaccc
    22321 ctgaacaata acgtctttaa tttcgctcac gctttattct ccacaggcag gaagttgaga
    22381 aagttgtgcc ggtaacgtct gagcgtacaa tccggcgcgt tttaccgcat taaccaccgc
    22441 gcggggagta atcgtcgcgc cggtgaactg gtcgaaatca ccaccatctt tcttcaccgc
    22501 ccagtgcgca tcatccgcac cactgatttt tttacccgca aaatgggtga tccagtcaga
    22561 aaggcgcagt tcgattttat cgccaagccc tggcgtttcg tggtgctctg tcacgcgcgt
    22621 gccaagtacc gtgccgttaa aatcggctcc caccagcagc tgaatcgcac cggaatagcc
    22681 atctggcgcg gttgcttcca gaacggcggc taccggtttg tcatcctgtt tggcgatgta
    22741 aacccgatgc tcacctttac ctaactctgg cgcagttacc agatagcaac tctgtgccag
    22801 cgcattgtta tagcgttcgg ctggcagcac ctgatcaaat aatgcctttt gttgcagact
    22861 tgcctgttca gcaatcgtcg ttttggtcat ctggttgatg gccgcagtta accctgttga
    22921 acccgctgca aatagcgcta acgtaatgcc gtgttttcgg atagttttca gcatggttta
    22981 ccctttgcga tggccgtaga cgcgcggacg cgtgtagtaa tcgatcagag gaaccgtgat
    23041 gttcgccagc aggacggcaa aagccacgcc gtcaggatag ccgccgaaac tgcggatcaa
    23101 ccagactaat aagcccgcaa gcgcgccgaa aataagacga ccacgattgg tcgtagaagc
    23161 ggtaaccggg tcagtcaaaa taaagaatgc gccgagcatg gtcgcaccag acagcagatg
    23221 aatttgcggt gctgccagtg tttctggtga gaacaaccag cccaacgttg cgcataacgc
    23281 cagcgttact aagaagctga ggggaatatg ccagcgaatc gctttctgcc atagcaacca
    23341 caggccgcca gccagccagg cgagatttac ccattgccaa ccagcgcccg ccagaatacc
    23401 gctgtagatc ggatattgca taatctgttc aaccgaatga ccggcacgga cagaggtttt
    23461 aaatgtatcc agcggtgtcg cctgactaat gccatcaata cctaagtgta gtgtgttcat
    23521 atcagcacca ctggcggtat gcccgctgaa aataacctgt atggcgtcga taaaaccagg
    23581 gatgttgacc gcaatttcat gtggcggtaa ccagctggtc atctgcaccg ggaaggagat
    23641 cagtaagacc acataaccaa tcattgccgg attaaacggg ttttgcccca gaccgccata
    23701 caactgttta gcgatgatca ccgcaaacac cgtacccagc acgaccatcc accatggcgc
    23761 gaggggggga atacttaccg ccagcaataa gcctgtcagc aatgctgagt tatctttcaa
    23821 cgttgcggct accgactgct tgcgtagttt gagtacgaga gcttcggcta acagagtact
    23881 aaccgatgcc aacaggatct gaacgagagt accccaacca aaaaaccaca gttgcgctgc
    23941 gattcctggc acggctgcga gcaacaccaa cagcataatg cgcgatgtct ggcgctggtt
    24001 atgggtataa ggggagctag ctattctgaa taccatttag tcctcgttta caaccttttg
    24061 ctgggcggct tttttggcct gagcgcgggc aatagccgcg gcaactgccg ctttgcgcgg
    24121 atcaacctgt tcttctggtt ctgcgttagt ctgttgctgt tccagcttgc gcgctttggc
    24181 acgggcaata gcggcttcga cggcggcttt gcgcggatca acctgttctt caggtaccgc
    24241 attagcctgt tgctgttcca gcttgcgtgc tttggcgcgt gcaatagccg cttcgacggc
    24301 agctttgcgc ggatcaacct gttcttctgg ctccgcatta gcctgttgct gttccagttt
    24361 gcgcgctttg gctcgggcaa tagcggcttc gatggcggct ttgcgcggat caacctgttc
    24421 ttctggttcc gcattagcct gttgctgttc cagcttgcgc gctttggcac gggcaatagc
    24481 ggcttcgacg gcggctttgc gcggatcgac ctgttcttct ggttccgcat tagcctgttg
    24541 ctgttccagc ttgcgcgctt tggcgcgggc gatagctgct tcaacggcag ttttacgtgg
    24601 atcagcaacg gttgctgcgt cgttagtttg ctgcagttct gcctgtttcg ctctggcttg
    24661 cgctttacgg gcttcccgtg ctgcaataat tgcactgtta tccgggcgtt cgcccgcttt
    24721 aatcacaata ggctgtgtag cctgggcctg tttctctttc acccgcgcca gagcggcagc
    24781 aatcgcatct ttatctttgg ctgcaggttg aacggctgcg ctcttatgtc gttcaaggcg
    24841 agccgctttt tcgcgctcca gacgagcctg gcgcgcttcg aaacgcgctt tggcttctgc
    24901 ggcgcgcttt tcttcctgac gaatagccgc aatttcagct ttttcctgac ggaaatattg
    24961 caccagggga atattgctcg ggcaaaccca cgcgcaagcc ccacattcaa tgcaatcagc
    25021 aatgttatgc gtggtagctt tatcgtgttg ctgacctttg ctgaaccagt acaactgttg
    25081 cggcaaaaga tccgcagggc aggcgtcagc acaggcgcta caccggatgc agctttgttc
    25141 ttcctgtggt tcgccaagtt cattggcaga gggagccaac agacagttgg taatctttac
    25201 gaccgggaca tccagccatg gcaaggtaaa gcccattagc gggccaccca taatcaccat
    25261 ttgatcggca gaggggcaga atcgggcatc attcaataaa tgacgcactg gcgtccccag
    25321 ccgtgcccag acgttgcccg ggcgagcgat tgcttcgcca gtcagggtta caacacgctc
    25381 ggtaatcggc tcgccatcaa taacggcacg tttcactgca taagcagtgc cgacgttttg
    25441 cattaatacg ccgatatcgg atgaacgccc gccatgtgga acctgcttcc cggtcagaat
    25501 gtaggttaat tgtttagcac cgccagaagg atatttggtt ggaatcaccc gcagagaaat
    25561 atcgttagag tccgccagca ccgcgcgcag catggaaatc gcctgcggtt tgttatcttc
    25621 aatgccgata agaatttcgc gtggctgcag aatatgcgca agaatgcgaa taccctctac
    25681 gacctgagcc gcgcaatcct gcatcaaacg gtcatcggcg gtaatgtacg gctcgcactc
    25741 agccgcgttg ataatcaacg tttcaatctt atctccgcca ccctgcaatt taacgcctgt
    25801 cgggaatcct gcaccgccca gcccggcaac accaaactga tgtatgcgct cgattaactc
    25861 ttcgcgacta cgagtgcgat aatcggccca gccgtcgcgc gggatccagc agtcttcacc
    25921 atcggcatca ataatcacgc ttaattcagc taaagctgaa ggatgagccg tagagtgggg
    25981 cgcaatagcc gtaacggtac ccgaggtggg cgcgtgaaca ggcagcattt tgccgcgacc
    26041 acgggtaagc ggctggccgc gcaatacttt atcgccgacg ctaacgcaca actcaccttc
    26101 agcgccaata tgctgtttca gtggaataac aaaacgctgc gccagtggta cctggcgcag
    26161 gggggtaccg ttggactggg ttttcatctc cggtggatgg atgccgccgt tgaaatccca
    26221 gattttattt tttctgaatg cagagaataa cttaagcatg gtgttccacg ggaatgatac
    26281 gcacgggaat ggtgttcaga tcccatttcc aggagtcagg tgtttctgcg accggttgca
    26341 acgagatgca gtgcgtcggg cacggatcaa cacataaatt gcagcccgta cagagatcac
    26401 tcattaccgt atgcatggca cgggtagcgc caacgatggc gtctaccgga caagcctgaa
    26461 tacatttagt gcagccaata cagttatttt catcaataac cgccaccatc cgcgcaggcg
    26521 ttagctcttg cgcttcgcca tccagcggct gcggctcgac attaagcaac tcggcaattt
    26581 ttagcatcac agcttcgcca cctggggcgc aacggttgat tttttcaccg ttacagctga
    26641 tggcttccgc gtaggggcga cagccgggat aaccgcactg accacactgg ctctgcggta
    26701 agatttcgtc aattttctca acgaccggat cgtcttccac cgcaaaacgg cgggaggcat
    26761 aacccagaat ggcgccaaac gccaggccca gcaggctcac ggcggcaacg gcaatccaga
    26821 tagcattcat tacaacttca ccaaaccact aaagcccata aaggccagag acataagacc
    26881 tgcggtaatt aacgcaatgg cattaccgcg aaaaggtgcc gggacatcag ccacagcaag
    26941 gcgttcgcgg atggcggtga agagcaccat caccagcgag aaaccgacag cggcggaaaa
    27001 accgtacagc gccgactgca agaaattgtg cccgagattg atattcagca acgccacgcc
    27061 gagcactgca cagttggtgg tgataagcgg caaaaaaatc cccagcagac ggtaaagcac
    27121 cgggctggtt ttgcgcacca ccatctcggt gaactgcacg accacagcaa tcaccagaat
    27181 aaatgccagg gtgcgcaggt aaatcagatt aagtgggatc aaaatccacg tatcgataag
    27241 ccaggcgcaa atagacgcca gcgtcatcac aaacgttgtt gccagcccca tgcccatcgc
    27301 ggtttccagt tttttggaaa cccccataaa cggacagaga ccgagaaact tgaccagcac
    27361 aaagttattg accagtatag ttccgacaaa cagtaacagg tagtcagtca tttttcggcc
    27421 tgaaataaaa aagccgccta ttatccgtta atccagagca ggcgacaaca ggttaactgt
    27481 aaggttatta cggattcaca aacgtcgctt ttacccgcga cgagcgtttg aaataggaga
    27541 cgatcaatgc ggttgccaac aaagtaaaca gcaactggcg aacggctatg ccatcttcca
    27601 cgggtgaaaa agcgaatgct tttactgcca gcaatacgga aataagcagc cagataatat
    27661 agtgtttagg aacacaacgc cgacgtttaa agaaagcgat ggtcaaccac agtgtgtaat
    27721 accacatggc gatagcggta ataaaagaaa cgccccataa gatttgtgtc gtcagtgctt
    27781 gtccgccgag cgtttgaaat gtttgcggag aagataacgc agcggtatac agcaacaacg
    27841 ccagcgtcgt actcaacaga gcgactaaaa gccaggccaa cgggccaagc aaccagcctc
    27901 caatacgttg tggcgttgtg gtggtcatag gttctccaga atagcgacgc aaacaggcaa
    27961 atctaatttt aggggcgtta ttataaggct tttataaccg atcgctactt tctttattgg
    28021 acatagtgcc agacggactt cggtacctgg ccgaggtcaa acaaacgccc gccagaaacc
    28081 agctctgcgc gacggtgatc ggcagcacga tacatattga tcagttcctg atcgtccgtc
    28141 agggtgtaat taagatggtc gtagagtttt tccagacttt cgagtgaact gattttgcga
    28201 aattttaata agtagtcctg aacagtcata aaaggtccat aaaataatta ataccaaagg
    28261 ggtaggtatt attagtgatg ataaaatttc accaaaagtg aacgcttgtg ttattacaat
    28321 aataagaatg cgctgatggc aaatattcag ggatgaaaaa ctgctctgaa aagagtaacg
    28381 cgctttacta tccctgacaa tcaccaacaa catcgaacaa gataataaat tcctggttta
    28441 atatccgaca agtgaaaaca tgcaaccgga cgggcagcat ggcgctctac aagcgcagag
    28501 cttacttgtg ttgtaccgaa gcactctgtt caggtggctg atagttgtca atgtgactcg
    28561 ccacgccaag aagaatgact gaaacgacaa gaacgatcca acctgttaat tcaataagac
    28621 gattcattac agcccacatc tctcttgatt gatccattaa cttcaggggg taaatgttac
    28681 ttagcaataa tagctccagc aagattttta ctgaggtttt tgcgatattt agcttttgtc
    28741 gttggaaaat tcgctatttt tttgacttaa tattaaactg ttgagcgtgg gtaaaggata
    28801 gtgtcaaata gcaatcatac ttcaatgaga ggcaatgaca tgagcgacaa catccgtgtt
    28861 gggttgattg ggtatggtta tgcgagcaaa accttccatg cgcccctgat tgcgggcacg
    28921 cccgggctgg aactggcggt aatctccagc agtgatgaaa caaaagtaaa agccgactgg
    28981 ccaacggtta cggttgtctc tgagccgaag catctgttta acgatcccaa catagacctg
    29041 attgtcattc ctacacccaa cgatacccat ttcccgttag ccaaagcggc gcttgaggcg
    29101 ggtaaacatg tggtcgttga taaacccttt accgtgacac tgtcacaagc gcgagagctg
    29161 gatgcgctgg caaaaagcct ggggcgtgtg ctgtctgtat tccataaccg tcgttgggat
    29221 agcgatttct tgacgctaaa aggtttgctc gcggaaggcg tgctgggtga agttgcttac
    29281 tttgagtctc attttgaccg cttccgtccg caggtgcgcg atcgttggcg tgaacagggc
    29341 ggcccaggca gcggtatctg gtacgattta gcaccgcatc ttcttgatca ggccattacg
    29401 ctatttggtt taccggtcag catgacggta gatttggcac agttacggcc cggagcgcag
    29461 tcgaccgatt atttccacgc catcttgtcc tatccacagc ggcgagtcat tttacacggt
    29521 accatgctgg cagccgctga gtcagcacgg tatatcgtgc atggatcccg aggcagttat
    29581 gtgaaatatg gcctcgatcc acaggaagaa cgtctgaaaa atggcgagcg tctgccgcag
    29641 gaagactggg gctacgatat gcgtgatggc gtacttaccc gagtggaagg tgaggaacgt
    29701 gtcgaagaaa cgctgttgac ggtacctggg aattatccgg cttactatgc ggctattcgt
    29761 gatgcgttaa atggcgatgg tgaaaatccg gttccggcaa gccaggcaat ccaggtaatg
    29821 gagttgattg agctgggcat cgaatccgcc aaacatcgcg cgactttgtg ccttgcatga
    29881 aaaatggatg gtgcaatttg caccatccat tttgttactt cgcggcgact ttttctcgca
    29941 gtgcgcgttt ttcctcagcg ctgaggaaag ccatttccag accattaatc tgtgcctggc
    30001 ggatttgctc gcgggataac ccagcagctg gcgcggcaac ggtatattcg tgaatgatat
    30061 ccactccctg tacgccggga tcgtcagtgt taatgccggc acgaatgcca tgctcaagga
    30121 acgttttcag cggatgtgca gccagctctg ctacggtgct ggtctgaata ttggaggtca
    30181 gacaggattc aataccaatt tgttgctcgg cgagaaaatc catcagcgcc cgatcttcaa
    30241 tggcttttac gccatgtcca atacgctccg cacccagttc acgaatcgcc tgccagatgc
    30301 tttccggccc ggcagcttcg cctgcatgga cggtaatatg ccagcccgca tcacgcgcaa
    30361 ggttgaagtg agaaaggaac agacttcccg ggaaaccaag ttcatcaccg gctaaatcaa
    30421 gggcggtaat ctggtcacgg tgggctaaaa aggcctccag ctcttgctga caggcggctt
    30481 cgccgaaggt tcggctcata atgccgataa gcttcgcctg cacaccaaaa gtgcggcaac
    30541 cttcacgtac gccatcgatc accgcttcga caacacccgc tacaggcagc ttatgtgcca
    30601 ttgccatgta gcctggtgaa aaacgcagct cgacatagtg caggccgtta cgggctgcat
    30661 cttcaatgtt ttcaaatgcc acgcggcggc aggcatcaag agaggcgaga actttaacgc
    30721 cccagtcaag tttggtcaga aagctcacca gatcgggttc gttggcaatg acctgaacgt
    30781 ggggaatcag tgtttccagg gattgtgcag gaagcgagat attatactgg cggccaagtt
    30841 caagaatggt ctggggacga atgttgccat caaggtggcg atggatatca gttaatggca
    30901 gggtggtatc aatcatggtc gcactctttt tctggatata aaagtgcgca ccattataaa
    30961 aacaaagcag ggtaaaaatc cacgattgcg caacgatttt tacgttgcgc aattggggtt
    31021 aacgaacagc gcggatggcg ttaattaatc cagccacacc tttttccagt ttcgaacgtg
    31081 ggcagccggc attgagacgg acaaaaccac gaccttcttc accgtaggta taccccggca
    31141 tgatcgcgac tttttcttgt tcgataagtg ctttttgcaa cgcgttgtcg tcaatattca
    31201 acggacgtaa atcaagccat gccagataag tggattgtgg gatctgccag ttgagttcag
    31261 gaaacgcggc gttcatttta tctgcgatat acgtcaggtt atctttcaga tagatgcgta
    31321 aggcatccag ccacggcgcg ccttgctgat aggcggcgat atgggcagtt aacgccagta
    31381 ccgaagggga agaaagccca tcacggcctt tcagtgccga taaataggca tcgcggctac
    31441 tgctattttc tataatcccg taagcaccgg tcagggcggg aatattgaaa cttttcgagc
    31501 ccgacgttag caacgcccag tctccgcgag ccacattact ccagggaata tgcggctgct
    31561 cgccccaaac catatccata tggatttcat cggaaataac ccgcacacca tgacgctcgc
    31621 acaggtcagc catgatctcc agctcatcgc acgtccacac tttcccggta ggattctgtg
    31681 ggctacacag gagcataatt ttacattctg gtttcgccaa cacggcttcc aacttgccca
    31741 tattgcaaaa ccaaccatca gcctgcttct ctaaagcaac gggcattact gtgcgctggt
    31801 taccttcaat ggccttgtaa aatgcgtcat aggcgggtgt gtggatcacc acgccttcac
    31861 ctgtttcaga ccactgacga atcagttctg aaaccatata gatgacagaa gggccataca
    31921 ccaccgtctg agaatcgatg gcggtgtaat gctgggtgga aaaccagtgg gcaatagcag
    31981 cgagaaactc atcgtttttc cagcggctgt agccaaatac gccgtgcatc aggcgctgat
    32041 tcagcgcctc tataatgcag ggggcagtgg caaaatccat gtctgaaatc gtgaacggta
    32101 acaggtcagc agtgccgaaa cggtcagcga cataatccca ctgtgtacac catgtgccat
    32161 gacgatccac gacctttgaa aaatcgaaca tatcttatcc ttatgcctgg acagtatgca
    32221 tcagaccggc catttcatct tttactgact gaacttgtgg cccgataaca acctgcaggt
    32281 tatgttgatt aagttgtact acgccaattg cccgattgtc cttcagtgcc tgcacattaa
    32341 caagcgacat atctttcaca gacaaacgca gacgggtaat gcagttatcg aggctgacaa
    32401 tattgtcggc accgcctaat gcttcgagga ttgcaggaac gttgtaacct gatttacccg
    32461 gcgcagcggc aacggctttt tcgattgagc tggcaacttc gctatcgcgc cccggggttt
    32521 tgagattgaa gcgggtgata gcgaaacgga agatggcgta gtaaacgaca aaccagattg
    32581 ccgccaccac tggcaccatg taccacttgg ttgacagacc atgcaaaata ccgaacacca
    32641 cgaagtcgat gatattgccg tcggtattac cgatggtgac gccgagcaca gacatgacgg
    32701 tgaagccgag gccggttaac agcgcgtgga tgacatacag aactggcgct acgaacagga
    32761 acaggaattc cagcggttcg gtagtgccgc caacgacgca ggcgatcagg ccagaaatca
    32821 gcagaccttt aattttatgg cgattttccg ggcgcgcgca gtgatacata gctaacgctg
    32881 cagctggcag accgccgaga aacgcaggca ttttaccttg cgaaaggaaa cgcgtggcgc
    32941 tttcagaaaa accgtgagtg gtcgggcaac tcaattgcgt ctggaagatg gtcagtgcgc
    33001 cgctgacggt ttgaccgcag acttcctgcg tgccgcctgc gtcggtaaag cgaattaatg
    33061 ccaccagaat gtgatgcaga ccaaacggca acagcagacg ttcaccggta ccaaacagca
    33121 tcggtccgaa atcacccgcg ctgtttatca tatggcccaa gccgctaata cccatggcga
    33181 aaatcggcca gactaatgga atcaccaggc cgacaaggcc catcaccagc gaggagataa
    33241 ttggtacgaa gcgcgtaccg ccgaagaatg ccagcgcatc cggcaggcgg atattatgga
    33301 aacgctcatg cagcatccag acgataatac cggcgatcac cgcaccgagg atcccggtat
    33361 cgatcgactg gatcccaaga atgctctgga tgttattggc tttcagaacc gcggcatccg
    33421 tggttggcag aatgccttta ttggtcaacc agaagtttac cgcgaggttc attaccgcat
    33481 aaccgacgaa gccagcgaat gccgctacgc ctttattttc gcgtgccagg cccagcggga
    33541 tggcgataca gaacatgaca ggcaggaaac taaaagcaaa cgagccaatc ttactcatcc
    33601 aggtaaagat agcctgcaac acggggttgc ccaggaccgg gatcagggtt atgacatcat
    33661 ggctgctaag agaactacca atgccgagca taatgccgca gaacgacaat aatgccacgg
    33721 gtaacatgaa ggttttgcct aactgctgga agaactccca cagcgtgact ttcggtgctg
    33781 ttttcgccgt cataaaacga ctcctcgtag agaacaatct ggattcagta aattgcgcga
    33841 gaagataaaa cgttttatca aattttagtg aggcataaat cacattacgc aacgataata
    33901 gcgggtataa gataaataaa aggtaaaacg ttttatctgt cacataatca gggagtaggt
    33961 catctgcatg gctaccgcca aaaaaataac cattcatgat gttgcgctgg ctgcgggcgt
    34021 gtcggtaagt accgtttcgc tggtgcttag tggcaaaggg cgaatctcta ccgccacagg
    34081 agaacgcgtt aacgccgcca ttgaagagct gggatttgtg cgcaatcgcc aggcgtcggc
    34141 gctgcgcggc gggcaaagcg gcgtcattgg tttgatcgtc cgtgatttat ctgcgccgtt
    34201 ttacgccgaa ttgacggccg gattgacgga agctctggaa gcgcagggac ggatggtttt
    34261 tttgcttcac ggcggtaaag acggcgagca gctggcacag cggttttcac tgttactgaa
    34321 tcagggggtc gatggtgtgg taattgccgg ggctgcagga agcagcgatg acctgcgacg
    34381 gatggcagaa gaaaaagcta tcccggtgat tttcgcttcc cgtgccagtt atcttgatga
    34441 tgttgatacg gttcgcccgg acaacatgca ggctgcacag ttgttgacgg agcatctcat
    34501 tcgcaatggg catcagcgga tcgcctggct gggagggcaa agttcctcat taacccgggc
    34561 agaacgggtg ggaggctatt gtgcaactct actaaaattt ggtctgccgt ttcacagcga
    34621 ttgggtgctg gagtgcacat ccagccagaa gcaagctgcg gaagctatca cggcgctttt
    34681 acgtcataac ccgaccatca gtgctgtggt ttgctataac gaaactattg cgatgggggc
    34741 atggtttggt ttgctgaaag cagggcggca aagcggggaa agcggagtcg atcgttactt
    34801 tgagcaacaa gtttcgctgg cggcatttac cgatgcgaca ccaaccacac ttgatgatat
    34861 acccgttacc tgggccagca cgcctgcgcg ggaacttggt accacacttg cggatcgcat
    34921 gatgcaaaaa atcacccatg aagagacgca ttcacgcaat cttattattc ccgcccggct
    34981 cattgcagcg aaataatcct ctctttatct gctatacctg gtagtgtcct ttcctcaagg
    35041 ttaatgataa aaaatgtggc acacagg
//
LOCUS       DADMJB010000022        35012 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.022, whole genome shotgun sequence.
ACCESSION   DADMJB010000022 DADMJB010000000
VERSION     DADMJB010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 35012)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35012)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35012
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.022"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            44..1270
                     /gene="dsdA"
                     /locus_tag="JN078_000983"
     CDS             44..1270
                     /gene="dsdA"
                     /locus_tag="JN078_000983"
                     /EC_number="4.3.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001051648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-serine ammonia-lyase"
                     /protein_id="HAY9040261.1"
                     /translation="MAEGLPYVGLTEQDVQDAHARLSRFAPYLAKAFAETAATGGIIE
                     SELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISSSIKARGGIYEVLAHAEKLALE
                     AGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADA
                     RAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENSRTLFLGYSVAG
                     QRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSP
                     CMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMVRLLDGFYTLSDQTM
                     YDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHLVWATGG
                     GMVPEEEMNQYLAKGR"
     gene            complement(1378..2916)
                     /gene="emrY"
                     /locus_tag="JN078_000984"
     CDS             complement(1378..2916)
                     /gene="emrY"
                     /locus_tag="JN078_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter permease
                     subunit EmrY"
                     /protein_id="HAY9040262.1"
                     /translation="MAITKSTPAPLTGGTLWCVTIALSLATFMQMLDSTISNVAIPTI
                     SGFLGASTDEGTWVITSFGVANAIAIPVTGRLAQRIGELRLFLLSVTFFSLSSLMCSL
                     STNLDVLIFFRVVQGLMAGPLIPLSQSLLLRNYPPEKRTFALALWSMTVIIAPICGPI
                     LGGYICDNFSWGWIFLINVPMGIIVLTLCLTLLKGRETETSPVKMNLPGLTLLVLGVG
                     GLQIMLDKGRDLDWFNSSTIIILTVVSVISLISLVIWESTSENPILDLSLFKSRNFTI
                     GIVSITCAYLFYSGAIVLMPQLLQETMGYNAIWAGLAYAPIGIMPLLISPLIGRYGNK
                     IDMRLLVTFSFLMYAVCYYWRSVTFMPTIDFTGIILPQFFQGFAVACFFLPLTTISFS
                     GLPDNKFANASSMSNFFRTLSGSVGTSLTMTLWGRRESLHHSQLTATIDQFNPVFNSS
                     SQIMDKYYGSLSGVLNEINNEITQQSLSISANEIFRMAAIAFILLTVLVWFAKPPFTA
                     KGVG"
     gene            complement(2916..4079)
                     /gene="emrK"
                     /locus_tag="JN078_000985"
     CDS             complement(2916..4079)
                     /gene="emrK"
                     /locus_tag="JN078_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter periplasmic
                     adaptor subunit EmrK"
                     /protein_id="HAY9040263.1"
                     /translation="MEQINSNKKHSNRRKYFSLLAVVLFIAFSGAYVYWSMELEDMIS
                     TDDAYVTGNADPISAQVSGSVTVVNHKDTNYVRQGDILVSLDKTDATIALNKAKNNLA
                     NIVRQTNKLYLQDKQYSAEVASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTL
                     ISSKAALNAAIQAYKANKALVMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGY
                     IAQRSVQVGETVSPGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENV
                     VFHGRVTGINMGTGNAFSLLPAQNATGNWIKIVQRVPVEVSLDPKELMEHPLRIGLSM
                     TATIDTKNEDIAEMPELASTVTSMPAYTSKALVIDTSPIEKEISNIISHNGQL"
     gene            4495..5109
                     /gene="evgA"
                     /locus_tag="JN078_000986"
     CDS             4495..5109
                     /gene="evgA"
                     /locus_tag="JN078_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-sensing system DNA-binding response
                     regulator EvgA"
                     /protein_id="HAY9040264.1"
                     /translation="MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL
                     KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSK
                     KEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKD
                     NNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG"
     gene            5114..8707
                     /gene="evgS"
                     /locus_tag="JN078_000987"
     CDS             5114..8707
                     /gene="evgS"
                     /locus_tag="JN078_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-sensing system histidine kinase EvgS"
                     /protein_id="HAY9040265.1"
                     /translation="MKFLPYFFLLCCGLWSTISFADEDYIEYRGISSNNRVTLDPVRL
                     SNKELRWLASKKNLVIAVHKSQTATLLHTDSQQRVRGINADYLNLLKRALNIKLTLRE
                     YADHQKAMDALEEGEVDIVLSHLVASPPLNDDIAATKPLIITFPALVTTLHDSMRPLT
                     SSKPVNIARVANYPPDEVIHQSFPKATIISFTNLYQALASVSAGQNDYFIGSNIITSS
                     MISRYFTHSLNVVKYYNSPRQYNFFLTRKESVVLNEVLNRFVDALTNEVRYEVSQNWL
                     DTGNLAFLNKPLELTEHEKQWIKQHPDLKVLENPYSPPYSMTDENGSVRGVMGDILNI
                     ITLQTGLNFSPITVSHNIHAGTQLNPGGWDIIPGAIYSEDRENNVSFAEAFITTPYVF
                     VMQKAPDSEQTLKKGMKVAIPYYYELHSQLKEMYPEVEWIKVDNASAAFHKVKEGELD
                     ALVATQLNSRYMIDHYYPNELYHFLIPGVPNASLSFAFPRGEPELKDIINKALNAIPP
                     SEVLRLTEKWIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKV
                     IQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENS
                     DSPFKDVFSNAHEVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYI
                     CGWQDITETRDLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGS
                     GLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHS
                     FGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLV
                     HIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNM
                     QGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAEHPITLPEKLSILIADDHPTNRL
                     LLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQNSS
                     LPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQVAHIAPQYRHLDI
                     EALKNNTANDLQLMQEILITFQHETHKDLPAAFQALEAGDNRTFHQCIHRIHGAANIL
                     NLQKLINISHQLEITPVSDDSKPEILQLLNSVKEHIAELDQEIAVFCQKND"
     gene            complement(8763..9908)
                     /gene="yfdE"
                     /locus_tag="JN078_000988"
     CDS             complement(8763..9908)
                     /gene="yfdE"
                     /locus_tag="JN078_000988"
                     /EC_number="2.8.3.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416872.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA:oxalate CoA-transferase"
                     /protein_id="HAY9040266.1"
                     /translation="MTNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPP
                     GHGDDTRTFGPYVDGQSLYYSFINHGKESVVLDLKNDYDKSIFINMLKQADVLAENFR
                     PGTMEKLGFSWETLQEINPRLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYP
                     DAPPVRVGTSLADLCGGVYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMA
                     YIATGKSPQRLGNRHPYMAPFDVFNTQDKPITICCGNDKLFSALCQALELTELVNDPR
                     FSSNILRVQNQAILKQYIERTLKTQAAEVWLARIHEVGVPVAPLLSVAEAIKLPQTQA
                     RNMLIEAGGIMMPGNPIKISGCADPHVMPGAATLDQHGEQIRQEFSS"
     gene            complement(9982..10926)
                     /gene="yfdV"
                     /locus_tag="JN078_000989"
     CDS             complement(9982..10926)
                     /gene="yfdV"
                     /locus_tag="JN078_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter YfdV"
                     /protein_id="HAY9040267.1"
                     /translation="MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYA
                     LPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCAL
                     IAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKK
                     NSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLT
                     LAAHKFEFSAEIVYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGII
                     IASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS"
     gene            complement(10996..12690)
                     /gene="oxc"
                     /locus_tag="JN078_000990"
     CDS             complement(10996..12690)
                     /gene="oxc"
                     /locus_tag="JN078_000990"
                     /EC_number="4.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxalyl-CoA decarboxylase"
                     /protein_id="HAY9040268.1"
                     /translation="MSDQLQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAE
                     GIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMI
                     SGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPG
                     GVYLDLPANVLAATMEKDEALTTIVKVENPSPALLPCPKSVTSAISLLAKAERPLIIL
                     GKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVML
                     VGARLNWLLAHGKKGWAADTQFIQLDIEPQEIDSNRPIAVPVIGDIASSMQGMLAELK
                     QNTFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSSVRDVLRENQDIYLV
                     NEGANTLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVTSGSPVVAIEGDSAF
                     GFSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPSPTDLLHHARYDKLMDA
                     FRGVGYNVTTTDELRHALTTGIQSRKPTIINVVIDPAAGTESGHITKLNPKQVAGN"
     gene            complement(12744..13994)
                     /gene="frc"
                     /locus_tag="JN078_000991"
     CDS             complement(12744..13994)
                     /gene="frc"
                     /locus_tag="JN078_000991"
                     /EC_number="2.8.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyl-CoA transferase"
                     /protein_id="HAY9040269.1"
                     /translation="MSTPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDV
                     TRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAI
                     DHMGFTWEHIQEINPRLIFGSIKGFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPP
                     LVSAAALGDSNTGMHLLIGLLAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRL
                     DKLGYLEEYPQYPNGTFGDAVPRGGNAGGGGQPGWILKCKGWETDPNAYIYFTIQEQN
                     WENTCKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTIDKHEAVAYLTQFDIP
                     CAPVLSMKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPMKFSAFTPDIKAAPLLGEH
                     TAAVLQELGYSDDEIAAMKQNHAI"
     gene            complement(14507..15139)
                     /locus_tag="JN078_000992"
     CDS             complement(14507..15139)
                     /locus_tag="JN078_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdX family protein"
                     /protein_id="HAY9040270.1"
                     /translation="MKRLIMATMVTAILASSTVWAADNAPVAAQQQTQQVQQTQKTAA
                     AERISEQGLYAMRDVQVARLALFHGDPEKAKELTNEASALLSDDSTEWAKFAKPGKKT
                     NLNDDQYIVINASVGISESYVATPEKEAAIKIANEKMAKGDKKGAMEELRLAGVGVME
                     NQYLMPLKQTRNALADAQKLLDKKQYYEANLALKGAEDGIIVDSEALFVN"
     gene            15435..15710
                     /locus_tag="JN078_000993"
     CDS             15435..15710
                     /locus_tag="JN078_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040271.1"
                     /translation="MKVNLILFSLFLLVYIMACNVFAFSISGGVSERSYKETEKTSAM
                     TTTHSTKLQPSQAILFKMREDAPPLNLTEEITPTYPTKANYLIHPVR"
     gene            complement(15787..16029)
                     /locus_tag="JN078_000994"
     CDS             complement(15787..16029)
                     /locus_tag="JN078_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdY family protein"
                     /protein_id="HAY9040272.1"
                     /translation="MIYLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYY
                     FTMWLTGGNELVTEIFMFLAPACGLMIRFMVGYGRR"
     gene            16382..17302
                     /gene="lpxP"
                     /locus_tag="JN078_000995"
     CDS             16382..17302
                     /gene="lpxP"
                     /locus_tag="JN078_000995"
                     /EC_number="2.3.1.242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311285.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kdo(2)-lipid IV(A) palmitoleoyltransferase"
                     /protein_id="HAY9040273.1"
                     /translation="MFPQCKFSREFLHPRYWLTWFGLGVLWLWVQLPYPVLCFLGTRI
                     GAMARPFLKRRESIARKNLELCFPQHSAEEREKMIAENFRSLGMALVETGMAWFWPDS
                     RVRKWFDVEGLDNLKRAQMQNRGVMVVGVHFMSLELGGRVMGLCQPMMATYRPHNNQL
                     MEWVQTRGRMRSNKAMIGRNNLRGIVGALKKGEAVWFAPDQDYGRKGSSFAPFFAVEN
                     VATTNGTYVLSRLSGAAMLTVTMVRKADYSGYRLFITPEMEGYPTDENQAAAYMNKII
                     EKEIMRAPEQYLWIHCRFKTRPVGESSLYI"
     gene            17658..17729
                     /gene="ypdK"
                     /locus_tag="JN078_000996"
     CDS             17658..17729
                     /gene="ypdK"
                     /locus_tag="JN078_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_077777854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein YpdK"
                     /protein_id="HAY9040274.1"
                     /translation="MKYFFMGISFMVIVWAGTFALMI"
     gene            complement(17794..19032)
                     /gene="alaC"
                     /locus_tag="JN078_000997"
     CDS             complement(17794..19032)
                     /gene="alaC"
                     /locus_tag="JN078_000997"
                     /EC_number="2.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine transaminase"
                     /protein_id="HAY9040275.1"
                     /translation="MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMG
                     NPDGATPPHIVEKLCTVAQRQDTHGYSTSRGIPRLRRAISRWYQDRYDVEIDPESEAI
                     VTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE
                     LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVY
                     DGWKAPSIMQVPGARDVAVEFFTLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYG
                     TFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWIVEMPKASMYVWAKI
                     PEPYAAMGSLVFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKA
                     MFRADGLLPASSKHIHENAE"
     gene            19409..21106
                     /locus_tag="JN078_000998"
     CDS             19409..21106
                     /locus_tag="JN078_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HAY9040276.1"
                     /translation="MHEIFNMLLAVFDRAALMLICLFFLIRIRLFRELLHKSAHSPKE
                     LLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMSGGILFGPWVGIITGVIAGIHRY
                     LIDIGGVTAIPCFITSILAGCISGWINLKIPKAQRWRVGILGGMLCETLTMILVIVWA
                     PTTALGIDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLP
                     LFRHVNSESLRKVCEIIRDDIHADAVAITNTDHVLAYVGVGEHNYQNGDDFISPTTRQ
                     AMNYGKIIIKNNDEAHRTPEIHSMLVIPLWEKGVVTGTLKIYYCHAHQITSSLQEMAV
                     GLSQIISTQLEVSRAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTAR
                     QLIFNLSRYLRYNIELKDDEQIDIKKELYQIKDYIAIEQARFGDKLTVIYDIDEEVNC
                     CIPSLLIQPLVENAIVHGIQPCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERV
                     EANEMPGNKIGLLNVHHRVKLLYGEGLHIRRLEPGTEIAFYIPNQRTPVASQATLLL"
     gene            21121..21855
                     /locus_tag="JN078_000999"
     CDS             21121..21855
                     /locus_tag="JN078_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAY9040277.1"
                     /translation="MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQH
                     NRVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKP
                     YQESRITGMLQKLEAAWQQQQTSSTPAATVTRENDTINLVKDERIIVTPINDIYYAEA
                     HEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYI
                     LRLKDLDFEVPVSRSKVKEFRQLMHL"
     gene            21868..22725
                     /locus_tag="JN078_001000"
     CDS             21868..22725
                     /locus_tag="JN078_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAY9040278.1"
                     /translation="MKAPGLPADQQFFADLFSGLVLNSQLLGRVWFASQPASLPVGSL
                     CIDFPRLDIVLRGEYGNLLEAKQQRMVEGEMLFIPARAANLPINNKPVMLLSLVFAPT
                     WLGLSFYDSRTTSLLHPARQIQLPSLQRGEGEAMLTALTHLSRSPLEQNIIQPLVLSL
                     LHLCRNVVNMPPGNSQPRGDFLYHSICNWVQDNYTQPLTRESVAQFFNITPNHLSKLF
                     AQHGTMRFIEYVRWVRMAKARMILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTP
                     GEYSARFQG"
     gene            complement(22728..25223)
                     /gene="ptsP"
                     /locus_tag="JN078_001001"
     CDS             complement(22728..25223)
                     /gene="ptsP"
                     /locus_tag="JN078_001001"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HAY9040279.1"
                     /translation="MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEITFINHRQNAKA
                     DAKSSLALIGTGTLFNDSCSLNISGSDEEQAQRVLEEYIQVRFIDSDSIQPTQAELTA
                     HPLPRSLSRLNPDLLYGNVLASSVGVGTLTLLQSDSLDSYRAIPASAQDSTRLEHSLA
                     TLAEQLNQQLRESDGESKTILSAHLSLIQDDEFAGNIRRLMTEQHQGLGAAIISNMEQ
                     VCAKLSASASDYLRERVSDIRDISEQLLHITWPELKPRNNLVLEKPTILVAEDLTPSQ
                     FLSLDLKNLAGMILEKTGRTSHTLILARASAIPVLSGLPLDAIARYAGQPAVLDAQCG
                     VLAINPNDAVSGYYQVAQTLADKRQKQQAQAAAQLAYSRDNKRIDIAANIGTALEAPG
                     AFANGAEGVGLFRTEMLYMDRDSAPDEQEQFEAYQQVLLAAGDKPIIFRTMDIGGDKS
                     IPYLNIPQEENPFLGYRAVRIYPEFAGLFRTQLRAILRAASFGNAQLMIPMVHSLDQI
                     LWVKGEIQKAIVELKRDGLRHAETITLGIMVEVPSVCYIIDHFCDEVDFFSIGSNDMT
                     QYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTTAHQRGKWVGICGELGGESRYLPLL
                     LGLGLDELSMSSPRIPAVKSQLRQLDSEACRELARQACECRSAQEIEALLTAFTPEED
                     VRPLLALENIFVDQDFSNKEQAIQFLCGNLGVNGRTEHPFELEEDVWQREEIVTTGVG
                     FGVAIPHTKSQWIRHSSISIARLAKPIDWQSEMGEVELVIMLTLGANEGMNHVKVFSQ
                     LARKLVNKNFRQSLFAAQDAQSILTLLETELTF"
     gene            complement(25248..26285)
                     /gene="ypdE"
                     /locus_tag="JN078_001002"
     CDS             complement(25248..26285)
                     /gene="ypdE"
                     /locus_tag="JN078_001002"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HAY9040280.1"
                     /translation="MDLSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFDGLGS
                     VLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTR
                     EECKIPGLLDGDRQGNDVSAMRVDIGTRSYDEVMQAGIRPGDRVTFDTTFQVLPHQRV
                     MGKAFDDRLGCYLLVTLLRELHSAELPAEVWLVASSSEEVGVRGGQTATRAVSPDVAI
                     VLDTACWAKNFDYGAANHRQICNGPMLVLSDKSLIAPPKLTAWIETVAAEIGVPLQAD
                     MFSNGGTDGGAVHLTGTGVPTVVMGPATRHGHCAASIADCRDILQMQQLLSALIKRLT
                     RETVVQLTDFR"
     gene            complement(26285..27370)
                     /gene="ypdF"
                     /locus_tag="JN078_001003"
     CDS             complement(26285..27370)
                     /gene="ypdF"
                     /locus_tag="JN078_001003"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HAY9040281.1"
                     /translation="MTLLASLRDWLKEQQLDAVLLSSRQNKQPHLGISTGSGYVVISR
                     ESAHILVDSSYFVEVEARAQGYQLHLLDATNTLTTIVNQIIADEQLQTLGFEGQQVSW
                     ETAHRWKSELNAKLVSATPDVLRQIKTPEEVEIIRLACGIADRGAEHIRRFIQAGMSE
                     REIAAELEWFMRQQGAEKASFDTIVASGWRGVLPHGKASDKIVAAGEFVTLDFGALYQ
                     GYCSDMTRTLLVNGEGVSAESHPLFDVYQIVLQAQLAAISAIRPGVRCQQIDDAARRV
                     ITEAGFGDYFGHNTGHAIGIEVHEDPRFSPRDTTTLQPGMLLTVEPGIYLPGQGGVRI
                     EDVVLVTPQGAEVLYAMPKTVLLTGEA"
     gene            complement(27385..28632)
                     /locus_tag="JN078_001004"
     CDS             complement(27385..28632)
                     /locus_tag="JN078_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIC"
                     /protein_id="HAY9040282.1"
                     /translation="MAIKKRSATVVPGASGAAAAVKNPQASKSSFWGELPQHVMSGIS
                     RMVPTLIMGGVILAFSQLIAYSWLKIPAEIGIMDALNSGKFSGFDLSLLKFAWLSQSF
                     GGVLFGFAIPMFAAFVANSIGGKLAFPAGFIGGLMSTQPTQLLNFDPSTMQWATSSPV
                     PSTFIGALIISIVAGYLVKWMNQKIQLPDFLLAFKTTFLLPILSAIFVMLAMYYVITP
                     FGGWINGVIRTVLTAAGEKGALMYAMGIAAATAIDLGGPINKAAGFVAFSFTTDHVLP
                     VTARSIAIVIPPIGLGLATIIDRRLTGKRLFNAQLYPQGKTAMFLAFMGISEGAIPFA
                     LESPITAIPSYMVGAIVGSTAAVWLGAVQWFPESAIWAWPLVTNLGVYMAGIALGAVI
                     TALMVVFLRLMMFRKGKLLIDSL"
     gene            complement(28654..28980)
                     /locus_tag="JN078_001005"
     CDS             complement(28654..28980)
                     /locus_tag="JN078_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-like phosphotransferase enzyme IIB
                     component 1"
                     /protein_id="HAY9040283.1"
                     /translation="MSKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGAD
                     GIQNRLTAQDIAEATIIIHSVAVTPEDNERFESRDVYEITLQDAIKNAAGIIKEIEEM
                     IASEQQ"
     gene            complement(29199..30164)
                     /gene="glk"
                     /locus_tag="JN078_001006"
     CDS             complement(29199..30164)
                     /gene="glk"
                     /locus_tag="JN078_001006"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HAY9040284.1"
                     /translation="MIKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAV
                     IRVYLEEHKVEVKDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFT
                     AVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGH
                     VDFAPNSEEEAIILEILRAEIGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDI
                     TERALADSCTDCRRALSLFCVIMGRFGGNLALNLGTFGGVFIAGGIVPRFLEFFKASG
                     FRAAFEDKGRFKEYVHDIPVYLIVHDNPGLLGSGAHLRQTLGHIL"
     gene            30368..31624
                     /locus_tag="JN078_001007"
     CDS             30368..31624
                     /locus_tag="JN078_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ion channel protein"
                     /protein_id="HAY9040285.1"
                     /translation="MLHPRARTMLLLSLPAVAIGIASSLILIVVMKIASVLQNLLWQR
                     LPGTLGIAQDSPLWIIGVLTLTGIAVGLVIRFSQGHAGPDPACEPLIGAPVPPSALPG
                     LIVALILGLAGGVSLGPEHPIMTINIALAVAIGARLLPRVNRMEWTILASAGTIGALF
                     GTPVAAALIFSQTLNGSSEVPLWDRLFAPLMAAAAGALTTGLFFHPHFSLPIAHYGQM
                     EMTDILSGAIVAAIAIAAGMVAVWCLPRLHAMMNQMKNPVLVLGIGGFILGILGVIGG
                     PVSLFKGLDEMQQMVANQAFSTSDYFLLAVIKLAALVVAAASGFRGGRIFPAVFVGVA
                     LGLMLHEHVPAVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPNTTLLPLLCIVML
                     PAWLLLAGKPMMMVNRPKQQPPHDNV"
     gene            31739..32065
                     /locus_tag="JN078_001008"
     CDS             31739..32065
                     /locus_tag="JN078_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2502 domain-containing protein"
                     /protein_id="HAY9040286.1"
                     /translation="MFRSLFLAAALMAFTPLAANAGEITLLPSIKLQIGDRDHYGNYW
                     DGGHWRDRDYWHRNYEWRKNRWWRHDNGYHRGWDKRKAYERGYREGWRDRDDHRGKGR
                     GHGHRH"
     gene            complement(32206..33444)
                     /gene="mntH"
                     /locus_tag="JN078_001009"
     CDS             complement(32206..33444)
                     /gene="mntH"
                     /locus_tag="JN078_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mn(2+) uptake NRAMP transporter MntH"
                     /protein_id="HAY9040287.1"
                     /translation="MTNYRVESSSGRAARKMRLALMGPAFIAAIGYIDPGNFATNIQA
                     GASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAE
                     IIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL
                     LLFVAAAYIVELIFSQPNLAQLGKGMVIPSLPTSEAVFLAAGVLGATIMPHVIYLHSS
                     LTQHLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAY
                     LTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVTMLP
                     SFIVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSDSKLMGDLVNSKRVKQTGWV
                     IVVLVVALNIWLLVGTALGL"
     gene            33780..34982
                     /gene="nupC"
                     /locus_tag="JN078_001010"
     CDS             33780..34982
                     /gene="nupC"
                     /locus_tag="JN078_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside permease NupC"
                     /protein_id="HAY9040288.1"
                     /translation="MDRVLHFVLALAVVAILALLVSSDRKKIRIRYVIQLLVIEVLLA
                     WFFLNSDVGLGFVKGFSEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFIS
                     ALIGILQHIRVLPVIIRAIGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGK
                     ISRNRMYTMAATAMSTVSMSIVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVD
                     ASEENIQMSNLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALIAALNALFATVTG
                     WFGYSISFQGILGYIFYPIAWVMGVPSSEALQVGSIMATKLVSNEFVAMMDLQKIAST
                     LSPRAEGIISVFLVSFANFSSIGIIAGAVKGLNEEQGNVVSRFGLKLVYGSTLVSVLS
                     ASIAALVL"
BASE COUNT         9234 a         8691 c         8083 g         9004 t
ORIGIN      
        1 gtcacggcga actgcctttc aaggttgaag tggcacgacc tcattggctg aaggtttacc
       61 ttatgttggc ctgaccgaac aggatgttca ggacgcccat gcgcgcttat cccgttttgc
      121 accctatctg gcaaaagcat ttgctgaaac tgctgccact ggggggatta ttgaatcaga
      181 actggttgcc attccagcta tgcaaaaacg gctggaaaaa gaatatcagc aaccgatcag
      241 cgggcaactg ttactgaaaa aagatagcca tttgcccatt tccagctcca taaaagcacg
      301 cggcgggatt tatgaagtcc tggcacacgc agaaaaactg gctctggaag cggggttgct
      361 gacgcttgat gatgactaca gcaaactgct ttctccggag tttaaacagt tctttagcca
      421 atacagcatt gctgtgggct caaccggaaa tctggggtta tcaatcggca ttatgagcgc
      481 ccgcattggc tttaaggtga cagttcatat gtctgctgat gcccgggcat ggaaaaaagc
      541 gaaactgcgc agccatggcg ttacggtcgt ggaatatgag caagattatg gtgttgccgt
      601 cgaggaagga cgtaaagcag cgcagtctga cccgaactgt ttctttattg atgacgaaaa
      661 ttcccgcacg ttgttccttg ggtattccgt cgctggccag cgtcttaaag cgcaatttgc
      721 ccagcaaggc cgtatcgtcg atgctgataa ccctctgttt gtctatctgc cgtgtggtgt
      781 tggcggtggt cctggtggcg tcgcattcgg gcttaaactg gcgtttggcg atcatgttca
      841 ctgctttttt gccgaaccaa cgcactcccc ttgtatgttg ttaggcgtcc atacaggatt
      901 acacgatcag atttctgttc aggatattgg tatcgacaac cttaccgcag cggatggcct
      961 tgcagttggt cgcgcatcag gctttgtcgg gcgggcaatg gtgcgtctgc tggatggctt
     1021 ctataccctt agcgatcaaa ccatgtatga catgcttggc tggctggcgc aggaagaagg
     1081 tattcgtctt gaaccttcgg cactggcggg tatggccgga cctcagcgcg tgtgtgcatc
     1141 agtaagttac caacagatgc acggtttcag cgcagaacaa ctgcgtaata ccactcatct
     1201 ggtgtgggcg acgggaggtg gaatggtgcc ggaagaagag atgaatcaat atctggcaaa
     1261 aggccgttaa taacgtttca acgcagcatc gcaatccttt ccctgggtga gcgatgctgc
     1321 cgatggcgca gacttaagat ccccggtctt acccgctata accccctcct tttatcatca
     1381 cccaacgcct ttcgctgtaa acggcggttt cgcaaaccaa accaaaaccg taagtaagat
     1441 aaaagcaata gccgccatac ggaaaatctc atttgcagaa atagaaagtg actgctgggt
     1501 tatttcatta ttaatttcat taagaactcc tgaaagcgaa ccataatatt tatccataat
     1561 ttgtgacgat gaattaaaca cggggttaaa ttgatcgatg gttgctgtca actgactatg
     1621 gtgtaacgat tcgcgtcgtc cccacagcgt cattgtcaac gacgtaccaa ctgatcctga
     1681 caaggtacga aaaaaattac tcatactcga ggcattggca aatttattat ctggcaagcc
     1741 tgaaaacgaa atcgttgtta agggtaaaaa gaaacaggca acggcgaatc cctgaaaaaa
     1801 ctgcggcaaa atgatgcctg taaaatcaat cgttggcata aatgtcacag aacgccagta
     1861 atagcaaacc gcatacatca aaaaactaaa tgtcactaac aaccgcatgt ctattttgtt
     1921 gccataacgt cctatcaaag gtgaaattaa tagtggcatg atgccgatgg gcgcataagc
     1981 aagtccggcc catatcgcat tataccccat cgtttcctgg agtaactgcg gcataaggac
     2041 gatcgctcca gagtaaaata aatacgcgca tgtgatactc acaataccaa tggtgaagtt
     2101 acgggactta aacaaactga gatcaagaat cgggttctct gaggtcgact cccaaatgac
     2161 taaagagatc agagaaataa ctgatactac tgttaatatt attattgtac tcgagttgaa
     2221 ccaatccaga tcgcgccctt tatcaagcat aatttgcaag ccaccaacac cgagcactaa
     2281 cagggtcagt cctggtagat tcattttgac cggtgaagtc tcagtttctc ttcctttaag
     2341 taaggttaag cataatgtca ggacgataat ccccataggg acattgatta aaaatatcca
     2401 accccagcta aagttatcac aaatataacc gcccaatatc ggcccacata tcggagcgat
     2461 aatcacggtc attgaccata atgccagagc aaatgttctt ttttctggcg gataattcct
     2521 taataataaa ctctgtgaca gtggaattaa cggccccgcc attaacccct gaacgactct
     2581 aaaaaatatc agcacatcaa gattggtcga taggctacac attaatgaag acagcgaaaa
     2641 aaaggttact gaaagtaaaa ataatcttaa ttcgcctatt ctttgtgcca acctgccagt
     2701 aacagggatc gcaatggcat ttgctacacc aaacgaggtg ataacccagg tgccttcgtc
     2761 tgttgatgct cccagaaagc cagatattgt cggtattgcg acgttagaaa tagtggaatc
     2821 caacatttgc ataaatgtcg ctaatgacaa tgcaatagtg acgcaccata acgtcccacc
     2881 ggttaatggt gccggagttg atttagtgat tgccattaaa gttgtccatt atgcgaaata
     2941 atgttgctaa tttctttttc tatcggactg gtatcgataa ctaaagcctt actggtataa
     3001 gccggcatgg aggtcacggt tgaagccagc tcaggcatct cggcaatgtc ttcgttcttc
     3061 gtatcaatag ttgctgtcat cgataaacca atacgcaagg gatgttccat gagttctttt
     3121 ggatcaagag aaacttcaac cggtacacgc tgaacgattt tgatccagtt ccctgtcgca
     3181 ttttgtgcag gtaataagga gaacgcattg ccggttccca tattgatccc tgtcacccga
     3241 ccatgaaaca caacattttc accataaaga tcgctgataa tattgaccga ttgaccaatc
     3301 cgcacatccg tgagttgtgt ttctttaaag ttggcattaa cccacatttg acgtgccggt
     3361 acgacagcca ttaacgattg tccggggctc actgtttcgc cgacctgaac acttctctgg
     3421 gcaatatagc cggtaaccgg actcttaata tccgtacgtt taagcgccaa ccaggcttct
     3481 ttagttgcat ccgccgcttc aacgacttgt ggctgacggt ttaatggtgt gttcattact
     3541 aaagctttat tcgctttata agcctggata gcggcattca atgccgcttt gctacttatt
     3601 aacgtatctt tggtatgctc cagcgtttct tttgaaataa ccccctgctt cgctaacggc
     3661 actcgacggt tataatcttc taaagattgt tgatactgaa tacgtgctga agcgacttcg
     3721 gcactgtatt gtttatcctg taagtatagt ttattcgttt gccgaacaat atttgccaga
     3781 ttatttttag ctttattgag tgcgatagtg gcatcagttt tatccagtga aactaaaatg
     3841 tcaccttgtc gaacgtagtt cgtatcttta tgattaacga cagtgacact acctgagact
     3901 tgtgcagaaa ttggatctgc attccccgtg acataggcgt catctgtact aatcatgtct
     3961 tctaattcca ttgaccaata gacataggca cctgaaaacg caataaataa aactaccgcc
     4021 aataaagaaa agtattttct tctgttagaa tgttttttat ttgaattaat ctgttccact
     4081 attatctctc atttctcata gatgaaattt atgaattgaa tgaaaagagc attcattctt
     4141 catatcaaac acagtgcatg tgttgcacat tatcccagga acgttggagg cctaatttaa
     4201 atgaggtgca aaaaaaacaa cagaggacta aaccgtggct tttgcaatac aattcttacg
     4261 cctgtaggat tagtaagaag acttatagtg ctaacttgaa actataaatc atcggtacaa
     4321 cccctgattt tattgttgac atttcattta tgccgactat ttatatggta tacttgtcga
     4381 attatcttaa aggaagctca gattttctta tttttattga gaaaatgaga tgacgcctta
     4441 tgtctgtatt actacaggga gaagggagat gcttcattgc aaagggaata atctatgaac
     4501 gcaataatta ttgatgacca tcctcttgct atcgcagcaa ttcgtaattt attgatcaaa
     4561 aacgatattg aaatcttagc ggagttgact gaagggggaa gcgccgttca gcgggtggaa
     4621 acacttaagc ctgatatcgt catcattgat gtcgatatcc ccggagttaa cggtatccag
     4681 gtgttagaaa cgctgaggaa gcgccaatat agcggaatta ttattattgt ctccgctaaa
     4741 aatgaccatt tttacgggaa acattgtgct gatgctggcg ctaatggatt cgtgagtaaa
     4801 aaagaaggca tgaacaatat cattgcggct attgaagctg caaaaaatgg ctactgctat
     4861 ttccccttct ctctcaaccg gtttgttgga agtttaacgt ccgaccagca aaaactcgac
     4921 tccttatcga aacaagaaat tagtgtcatg cggtatattc ttgatggcaa ggataataat
     4981 gacattgctg aaaaaatgtt catcagcaac aaaactgtca gcacttataa aagtcgcctg
     5041 atggaaaaat tagaatgtaa atcactgatg gatctttaca cattcgcgca acgtaacaaa
     5101 atcggctaat cacatgaagt ttttacccta tttttttctt ctctgttgtg gtctttggtc
     5161 gaccataagt ttcgcagacg aagattacat cgaatatcgt ggcatcagta gtaacaaccg
     5221 tgtcacactt gatccagtac gtctgagcaa caaggaatta cgttggttag cgagcaaaaa
     5281 aaatcttgtg attgcagtac acaagtccca aacggctacc ttgttgcata ccgattcgca
     5341 gcaacgggtt cgtggtatta atgctgatta tttaaatctt ttaaaaagag cgttaaatat
     5401 caaattaaca ctccgggaat acgccgatca tcaaaaagca atggacgcgc tggaagaagg
     5461 tgaagtcgat atagtgttat cacatttagt tgcttcgccg cctcttaatg atgacattgc
     5521 tgcaaccaaa ccactgataa ttacctttcc ggcgctcgtc accacccttc acgattcaat
     5581 gcgaccgctt acctcatcaa aaccagtaaa tattgctcga gtagcaaatt atccccctga
     5641 cgaggtaatt catcaatcat ttccaaaagc aacaattatc tcttttacaa atttatatca
     5701 ggcattagca tccgtctcag ccggacagaa tgattacttt attggtagta acatcattac
     5761 cagcagtatg atttcccgct atttcactca ctccttaaat gtagtgaaat attataactc
     5821 accgcgtcaa tataattttt tcttgaccag aaaagaatct gtcgttctta atgaagtact
     5881 caatcgattt gttgatgctt taacaaatga agttcgctat gaagtttcac aaaattggct
     5941 tgatacagga aacctggcct ttctgaacaa accattagaa ctcactgaac atgaaaaaca
     6001 gtggattaag caacatcccg atttaaaggt gctggaaaat ccttactctc ctccctattc
     6061 tatgacggat gaaaatggct cggttcgggg cgttatgggg gatattctta atattattac
     6121 cttgcaaaca ggtttaaatt tttctccgat caccgtttca cacaatatcc atgccggaac
     6181 acagcttaac cccggtggat gggatataat acctggcgct atttatagtg aagatcgaga
     6241 aaataatgtt tcatttgcag aagctttcat aacaacgcca tacgtttttg tcatgcaaaa
     6301 agcacctgac agtgaacaaa cattaaaaaa aggaatgaaa gttgccattc catattatta
     6361 tgagctgcat tcgcaattaa aagagatgta tccggaggtt gagtggataa aagtcgataa
     6421 cgccagcgct gcatttcaca aggtcaagga aggtgaactt gatgctctgg tcgcgacaca
     6481 gctaaattcg cgttacatga tcgatcatta ctatcctaat gaactgtatc attttcttat
     6541 tcccggcgtt ccgaatgcat cgctttcgtt cgcttttcct cgcggagaac cggaacttaa
     6601 ggatattatt aataaagcac tgaatgcaat tcccccaagc gaagttctgc gcctgacgga
     6661 aaaatggatt aaaatgccca atgtgaccat tgacacatgg gacctctata gcgagcaatt
     6721 ttatattgtt acgacattat ccgttttatt agttggcagt agccttttat ggggattcta
     6781 cctgttacgc tcagttcgtc gtcgtaaagt cattcagggt gatttagaaa accaaatatc
     6841 attccgaaaa gcactctcgg attccttacc aaatccaact tatgttgtaa actggcaagg
     6901 taatgtcatt agtcataata gtgcttttga acattatttc actgcggatt actacaaaaa
     6961 tgcaatgtta ccattagaaa acagtgactc accctttaaa gatgtttttt ctaatgcgca
     7021 tgaagtcaca gcagaaacga aagaaaatcg aacaatatac acacaggtat ttgaaattga
     7081 taatggcatc gagaaaagat gcattaatca ctggcataca ttatgcaatc tgccagccag
     7141 cgatcatgct gtttatattt gtggttggca agatattacc gagacgcgtg atttaattca
     7201 tgcactcgaa gtagagagaa ataaagcgat caatgcaact gtcgcaaaaa gtcagtttct
     7261 ggcaacaatg agtcacgaaa taagaacacc aataagctcc attatgggct tcctggaact
     7321 tctgtcgggt tctggtctta gcaaggagca acgggtggag gcgatttcac ttgcctacgc
     7381 caccggacaa tcactcctcg gcttaattgg tgaaatcctt gatgtcgaca aaattgaatc
     7441 gggtaactat caacttcaac cacaatgggt cgatatccct actttagtcc agaacacttg
     7501 tcactctttc ggtgcgattg ctgcaagcaa atcgatcgca ttaagttgca gcagtacatt
     7561 tcctgatcat tacctggtta agatcgaccc tcaggcgttt aagcaggtct tatcaaattt
     7621 actgagcaat gctctcaaat ttaccaccga gggggcagta aaaattacga cctccctggt
     7681 tcacattgat gacaaccacg ctgttatcaa aatgacgatt atggattctg gaagtggatt
     7741 atcgcaggaa gaacaacaac aactctttaa acgctacagc caaacaagtg caggtcgcca
     7801 gcaaacagga tctggcttag gcttaatgat ctgcaaagaa ttaattaaaa atatgcaggg
     7861 cgatttgtca ttagaaagtc atccaggcat aggaacaaca tttacgatca caatcccggt
     7921 agaaattagc cagcaagtgg cgactgtcga ggcaaaagca gaacacccca tcacactacc
     7981 tgaaaagttg agcatattaa tcgcggatga tcatccgacc aacaggctat tactcaaacg
     8041 ccagctaaat ctattaggat atgatgttga tgaagccact gatggtgtgc aagcgctaca
     8101 caaagtcagt atgcaacatt atgatctgct tattactgac gttaatatgc cgaatatgga
     8161 tggttttgag ttgactcgca aactccgtga gcaaaattct tccttaccca tctgggggct
     8221 tacagccaac gcacaggcta acgaacgtga aaaagggtta agttgcggca tgaacttatg
     8281 tttgttcaaa ccgttgaccc tggatgtact gaaaacacat ttaagtcagt tacaccaggt
     8341 tgcgcatatt gcacctcagt atcgccacct tgatatcgaa gccctgaaaa ataatacggc
     8401 gaacgatcta caactgatgc aggagattct catcactttc cagcatgaaa cgcataaaga
     8461 tctacccgct gcgtttcaag cactagaagc tggcgataac agaactttcc atcagtgtat
     8521 tcatcgcatc cacggtgcgg ctaacatcct gaatttgcaa aagttgatta atattagcca
     8581 tcagttagaa ataacacctg tttcagatga cagtaagcct gaaattcttc agttgctgaa
     8641 ctctgtaaaa gaacacattg cagagctgga ccaggagatt gctgttttct gtcagaaaaa
     8701 tgactaaata gcggctccca caatgttcaa atgtgggagc tatttaccag cacatcttac
     8761 atttatgatg agaactcctg gcgaatttgt tccccatgct ggtcgagcgt tgccgctccc
     8821 ggcataacat gcgggtccgc gcagccgctg atttttatcg gattacccgg catcattatt
     8881 cccccggctt caatcaacat atttctcgcc tgagtttgtg gcaatttaat ggcctcagcc
     8941 acacttaata acggcgcgac gggtacacca acttcatgta ttctggctaa ccaaacttca
     9001 gctgcctgcg tttttaacgt ccgctcaata tattgtttaa gaatagcctg gttttgtacg
     9061 cgtaaaatat tgctgctaaa tcggggatca ttaaccagtt ccgtaagctc cagtgcctgg
     9121 cataacgcag aaaaaagctt gtcattacca caacaaatcg taatcggctt atcctgagta
     9181 ttgaaaacat caaaaggtgc catgtaggga tggcgatttc ccagacgttg tggtgacttc
     9241 cctgtcgcga tatatgccat cagaccatgc tccagaaaac tcagcgtggc atcaaacatc
     9301 gctatatcga catgcgcccc tctctggctc ttttcgcggc cataaagtgc actcactatt
     9361 ccgctgaata aatagacacc gccgcataga tccgcaagag atgtaccaac gcgcactggc
     9421 ggagcatcag gatatcctgt ttccatcatt atcccgctca ttgcctgaat gatggtatcg
     9481 taggcaggag catcttttag cggaccggta tgtccgaaac ctgacgatga agcatatatg
     9541 aggcgcgggt tgatttcttg aagcgtttcc catgaaaacc ccagtttttc cattgtacct
     9601 gggcgaaaat tctcagctaa tacatcagct tgtttgagca tatttataaa tatactttta
     9661 tcgtaatcat tctttaaatc aagaaccaca ctctctttgc catgattaat aaaactgtaa
     9721 tagagtgact gtccatccac atagggacca aatgtgcggg tatcatcacc atgacccggc
     9781 ggctcaactt taattaccct tgcgcccata ttacaaagaa gttgagttcc gaaaggtcca
     9841 ttaaggacat gtgtcatatc gataactaat aagccttcaa acggcccttt gctttcatta
     9901 tttgtcattt gcttatgcct tgaaaaaagc cgaaggtgaa aagacacttc ggcatttatg
     9961 taaaatcaat aacatgatta attatgaaac cagtcgactg acataaatcc acaagggagc
    10021 cgtgacgaca aagcccagta cgctcacagc caatgacgct gtaccagtac gggtgtagac
    10081 attaaaccgg ctggcaataa taattccgga gaatgccggc ggtaatgcgc ctgccagtac
    10141 catcatctgc agatgttcgc tgttcaaatg acatgccata ccaacgagaa gcagtgccag
    10201 tggcatcaga atcagcttca ggaaggtgtt ataaacaatt tcggcactga actcgaattt
    10261 atgtgcagcc agagtcaacc ccgcagcgaa taccgctacc cctgagttag ccttcgcaat
    10321 cagattaaag gttgggtccc atgctgccgg aatttttacc ccaaccaaca ccaggatcgt
    10381 tgccagaaca ggtgcccata ctactggctc ctttgccgca gaaattaatg cactcagatt
    10441 actattcttc ttaccatccg ctcctgaaga aggattcagc aaatacagac caataggaat
    10501 agtaattgcg ttaacaataa tagaaataat tgctaccact aaacctgttg atacggaatc
    10561 accataaata ggatcgagaa ctgcaaaccc caggaatcca atggtaggtg aacctgcaat
    10621 taatgcacat acagctgctt ctgcatgggt acgtttaaaa aatttgtagc aaccgaacca
    10681 ggagaaaaag aaacatccga caataaccac aagtgataca agggtcagac gagtgtccgc
    10741 aaaaatcatt tccctgtttg cccgagtaat agatacaaat agagccgcag gaagcgcgta
    10801 gtttaatacc agtttattaa atgcgcgggc ttgatcttct gaaaaagttt ctcgtctgcc
    10861 gctaaaataa cccaacagca tgattacgat aataggcaat aaatcgccaa taaaaaatgt
    10921 tagcataata gtatttccga taagggtccc ctcaccatcg cataatgaat tggcaagagg
    10981 agacgatgtc agtatttaat taccagcgac ttgttttggg ttaagtttgg taatatggcc
    11041 actttcagtt cctgctgcag ggtcgatgac cacattaata atggtcggtt tgcgcgactg
    11101 aataccggtg gttaaagcat gacgaagttc atctgtcgtg gtgacgttat agccaacgcc
    11161 acgaaacgca tccattaatt tgtcatacct tgcatggtgc aacagatccg ttggagatgg
    11221 tgcaccagcg ccactgagat caacaccgtc tcctctgtag atgccgccat tattaaaaat
    11281 aacgatcgtc accggcaggt tatatcgaca aatcgtttca atttccatcc cactgaaacc
    11341 aaaagcacta tcaccttcaa tggcgacaac cggagaacca gaagtcacgc tagcaccgat
    11401 ggcatagccc ataccgatgc ccatgacacc ccaggtacca caatccagac gacgacgtgg
    11461 tttatacata tcaataatat ttcgtgcatt atccagggta tttgcacctt cattaactaa
    11521 ataaatatcc tggttctcgc gcaatacgtc gcgcacagaa cttaatgcat taaagtaatt
    11581 taatggttga gtatctgtac ttaatttttc atgcattttt tgtgcatttt gctgcttgtg
    11641 gatatttaaa atatcgcgcc ataccagtgg agtcgtaaat gtgttttgtt tcagttctgc
    11701 cagcatacct tgcatactgg atgcaatatc accaatgact ggcacagcaa tggggcggtt
    11761 gctgtcaatt tcctgcggtt caatatccag ttgaataaac tgtgtatctg ccgcccatcc
    11821 ttttttaccg tgtgccaata accaattcag tcgtgcacca acaagcatga caacgtcagc
    11881 atttgccagg gcaaacgaac gcgcagctgc cgcagaaagt ggatgcgtat cttcaaggat
    11941 ccctttcgcc atagacattg gcaggaatgg aatctgagca ctttcaataa attcacgaag
    12001 ctgttcatca gcttgtgaat acgccgcgcc tttgccaagg ataattaatg gccgttcagc
    12061 ttttgctaaa agcgaaattg cgctagtgac tgacttcggg catggcaata atgctggcga
    12121 cggattttca actttaacaa tcgtggttaa cgcttcgtct ttttccatcg tcgcggccag
    12181 gacatttgct ggcaaatcaa gataaactcc gccagggcga cccgatacag agacccggat
    12241 agcgcgtgcc aatgcaatgc caagatcctg cggctgatta acgcgaaatg ctgctttggc
    12301 atacggtttt gccgcattca tttggtccag ctcttcataa tcaccttgct gtaggtcgac
    12361 gatcgcgcgg tcgctggagc cgctaatcat gatcatcgga aaaccattta ccgttgcgtt
    12421 ggccaatgcc gtcaaaccat tgaggaatcc tggcgcagaa actgtcaggc agatccccgg
    12481 tttttgggta agaaaaccgc ttgccgcagc ggcatagcct gccgactgct catgacgaaa
    12541 accaatataa cgaatgcctt ccgcctgggc atggcgtgcc atatccgtca caggaatacc
    12601 tacaacacca taaatagtgt caatattatt ctgttttaat gcttcaacga tgatatgcat
    12661 accatctgtc atttgaagtt gatctgacat gattaataac ctcgaaattt ttataaattg
    12721 ggagccagaa gcccccgtta atatcagatg gcgtggtttt gcttcattgc agcaatttca
    12781 tcgtcgctat aacctagctc ctgcaataca gcagcggtat gttcacctaa tagcggcgca
    12841 gctttaatat ccggcgtaaa agcagagaat ttcattggac aaccaacggt cagatatttt
    12901 ccacgcaacg gttgttccac ttcaacaaca ctgccacttt ggcgcaaaga gggatcaagt
    12961 gaaatttctt tcatacttaa aaccggtgca caaggaatat caaactgagt caaataggcc
    13021 accgcttcat gtttatcaat agtgacagtg tatttttcga tttcagcaaa aatatcgaaa
    13081 atatgtggct gtcgggcatg ggctgtactg tatgccggat cggtaatcca ttctggtttg
    13141 ccgatggctt tacaggtgtt ttcccagttt tgctcctgaa tagtgaaata aatataggcg
    13201 ttcggatcgg tttcccagcc tttacatttc aggatccagc caggctgacc gccaccacct
    13261 gcattaccac cgcggggaac tgcatcacca aatgtaccat tcggatactg cgggtattct
    13321 tccagataac ccaatttatc gagacgctgc tggtcacgta atttcacgcg gcaaaggttc
    13381 aatacggcat cctgcattga catggtgact cgttgcccac gccccgtttt ttcgcgatgc
    13441 agcaaagcag caagcaaacc gatcagcaaa tgcattccgg tgttgctgtc acccaacgct
    13501 gcagcgctta ccagcggcgg accatcccaa aaacccgtag tggatgccgc gccacccgct
    13561 gcctgagcaa cgttttcata ggcttttaca ttcacataag gcgaacactc atcaaaccct
    13621 ttgatcgaac caaaaatcag acgtggattg atttcttgaa tatgctccca ggtgaagccc
    13681 atgtgatcaa tggcccctgg atgaaagttc tcgactaaga tatcagcttc gcggatcagc
    13741 ttttccatta cctctttgcc ttccgctgtt ttggtattta actcaataga acgtttgtta
    13801 ctgttaagca tggtgaagta aagcgcatcg atatcaggaa tatctcgcag ctggtgacgc
    13861 gttacgtcac caacgccggg acgttcaatt ttaataacgt cagcgccaaa ccaggccagc
    13921 atttgagtac aagatgggcc agattgcaca ccggtgaaat cgagaacttt aattccttga
    13981 agtggagttg acatagcaat acctattagt taattaaata tgtgttaatt tagcgtttat
    14041 ttaaggcgta atatcttcta taaataaccc gcaaaatatc gtcgtagctg cactcgatat
    14101 ttttaaaatc ctgtatcaag tgctgaaaat catttcatcg ccacttccaa ttcctttctg
    14161 catggtaagt agtgaggacg aaaagaagaa tatgataaat attgattcgt ggtaatcaga
    14221 gagagtcgcg acatttgtga tgttattctt acaactgtaa gaagcgccgg tgatttacaa
    14281 gtaagggtat gattacgctt tttaaagcgt accataaaac ataacataat aaatgatttg
    14341 tgatgacacg ggattattgg ggtttacttt gaggaagata aaatgcgtgt ttatagaacc
    14401 gcgagcgcca aataatttta tgaccacaac ctgtcgtatt gtggtcataa aaaattgtcg
    14461 gctggaggga gttaaatcct ttacctcaat atactgcctg tcagcattag ttcacaaaca
    14521 gtgcttcgct gtcgacgatg attccatctt ccgcaccttt cagcgccagg tttgcctcgt
    14581 agtattgctt tttatcaagc agtttctgcg catcagcaag tgcattacga gtctgtttaa
    14641 gcggcatcag atattggttt tccattacgc caacaccggc caggcgaagt tcttccattg
    14701 cgcccttttt atcccctttc gccatttttt cattggcaat ttttatcgcg gcttcttttt
    14761 cgggagttgc tacataactc tcagaaattc cgacagatgc attaatgaca atatattggt
    14821 catcattgag attggtcttt ttacctggct tagcgaactt tgcccattcg gtactgtcat
    14881 ctgacagcaa agcggaagct tcattggtca gttcttttgc cttttctgga tcgccatgaa
    14941 acagagccag gcgcgctacc tgcacgtcac gcatcgcata taaaccttgt tcagagatac
    15001 gctctgctgc tgccgttttc tgggtttgct gaacttgctg agtttgctgt tgtgccgcta
    15061 ccggtgcatt atcagcagcc catacagttg aagatgccag aattgctgtg accatcgtag
    15121 ccataattaa acgtttcata cttacctcat tctttaacag ttttagaaaa cgccgccatc
    15181 atattgggtg agcatgaaat gagaaatcag agagcaacgg tcattttgaa agggttatct
    15241 tacagttgta gttattatcg caagaagtat tttagtctta caattgtagg aatctgcttc
    15301 ctgtcgcaga gaactattct tatgtaccac aaagagatgt catttattat atcgatgtaa
    15361 atattgatta attatatgta aatacagcca taacatcgta ggttctcagt gaaccatttt
    15421 caggataact ttctatgaaa gtaaacttaa tacttttcag cttattttta ttggtctata
    15481 ttatggcatg caatgttttt gcattttcca tttctggtgg tgtaagtgag aggagctata
    15541 aagagactga aaaaacatca gcgatgacga ccacacactc tacaaaactt cagccatcac
    15601 aggcgatttt gtttaagatg agagaagatg cgccaccatt aaacctcaca gaagaaatca
    15661 cgcctactta tccgacaaag gcgaattatc ttattcatcc tgtgcgatag cgtctgtcac
    15721 atggcaggtg aacaatcatg tctgatgctg atgtgaacac ctgcccaaat gagccatcct
    15781 gacccactat cgcctgccat accccaccat aaagcgaatc atcaagccac aagccggggc
    15841 aagaaacata aatatctccg tcactagttc attaccgcca gttaaccaca tggtgaagta
    15901 ataaatgagt gcagcgagga tcaccatgcc gaagaaagaa gagaccgccg ataccacgtt
    15961 cagtacctga ccgatgtagc cgcttacgca gacaatacac agggcgagaa acatccataa
    16021 ataaatcata gctcaacctc ctgccgcgct aaaaaacctg taacttcagt cactttaata
    16081 gtaagacaat ccttaacctc tggcaatttt tgctaagcat caatgaaaac agcatgttaa
    16141 atgcaagact gttgtgtacg gaaaaatatt tactttgcac gattaataat cagtagctga
    16201 aagcagtcag cgagtgataa agtacagata ccgcattcat gctcctcgtg gttatgtcct
    16261 gactagtctt tacacacttt acaggaacca ttgtcgtaca tgatggccca accaattgag
    16321 tgtaccgctg tcgacatgga atcttctgcg atacaacaat tcgtatctac agaaggtaac
    16381 tatgtttcca caatgcaaat tttcccgcga gtttctacat cctcgctact ggctcacatg
    16441 gtttgggctt ggtgtactct ggctttgggt acagcttcct tatcctgttc tctgctttct
    16501 cggcacgcgt attggcgcaa tggcgcgacc attcctgaaa cgtcgtgaat ctatcgcccg
    16561 taaaaacctg gaactttgtt tcccgcagca ttctgcggaa gaacgcgaga agatgattgc
    16621 cgaaaacttt cgttcactcg gcatggcgct ggtagaaacc ggcatggcat ggttctggcc
    16681 cgacagtcgc gtacgtaaat ggtttgatgt tgaagggttg gataacctta aacgcgcaca
    16741 aatgcaaaat cgcggcgtaa tggttgtcgg cgtccatttt atgtcgctgg aactgggcgg
    16801 ccgcgtgatg ggactgtgcc aaccaatgat ggctacctat cgtccacata ataatcagct
    16861 gatggaatgg gtgcagaccc gtgggcgcat gcgctctaac aaagcgatga tcggcagaaa
    16921 taatctgcgc ggcattgtcg gtgcactgaa gaaaggtgaa gcggtatggt ttgctcccga
    16981 tcaggattat ggtcgtaaag gcagctcctt cgcgccgttc tttgcggtgg aaaatgtcgc
    17041 cacaaccaat ggcacctatg ttctctcccg tctctctggc gcagccatgt tgaccgtaac
    17101 gatggtaaga aaagcggatt acagcggata tcgtttgttc atcaccccag agatggaagg
    17161 ctacccgaca gatgaaaatc aagccgctgc ctatatgaac aagattatcg agaaagagat
    17221 catgcgcgca ccggagcagt acctctggat ccactgtcgc tttaaaacgc gcccggtggg
    17281 agaatcgtcg ttgtacattt aacaaactgc tcttactctt tccctcctca aatcggccat
    17341 aataacctca tggtttttat ggcttttttc ttaaggtttt ttccttcgct gaatatctaa
    17401 ttattaccgt cagaaattaa actgtcgccg atatgagaca cttgtaagtt actaaaagta
    17461 aataagaaaa tgcctcttgt ctcgtttcag ttttaggcgt acattagcgc cgtctcgagc
    17521 agtttagctc agaattctgg ggtgatgccc acggtaaaat acagggcttt taaggtcgct
    17581 ttgcccagtg tcaactcact gtatcaggtg taatgaagtc attcaggcgt aacagcaatt
    17641 acgcggagag atgtaaagtg aaatatttct ttatgggcat ttcttttatg gtcatcgttt
    17701 gggccggtac ttttgccctg atgatctaaa agcaaactgt gcaatgaaaa acaggagcca
    17761 tcaggctcct gtttgcattt ctgacgacgg tgtttattcc gcgttttcgt gaatatgttt
    17821 gctgctggcg ggtagtaaac cgtcggcacg gaacatcgct ttaatccctc tgatggcctg
    17881 acgaatacgg tcgcggtttt caatcagtgc aaagcgaaca tgcgtatcac catagtcgcc
    17941 aaagccaatc cccggcgaga cacagacctt cgcttcgtta agcaatttct tggcaaatac
    18001 cagcgagccc atggcagcat acggttccgg tattttcgcc cagacataca tcgaagcctt
    18061 cggcatttca actatccagc ccgcttcatg cagcccttta accaatacat cacggcggcg
    18121 tttgtactgt tcggcaatgt cgcgcacgca ctgttgatcg ccctccagcg ccgcaatcgc
    18181 cgccacctgc aacggcgtaa aggtgccgta atcgtgatag cttttaatac gagccagggc
    18241 gctgaccagc gttttgttgc caaccataaa gccgatacgc cagcccgcca tgttgtagct
    18301 tttcgacagc gtaaagaact cgactgccac atcgcgtgca cccggtacct gcatgattga
    18361 cggcgctttc cagccatcgt agacgatatc ggcataggcc aggtcgtgga ccaccagcac
    18421 atcgtagcgt ttcgccagcg ccacaacctt ttcgaagaac tccagctcca cgcattgcgc
    18481 ggttggattc gacgggaagc cgaggatcat catcttcggt ttcggataac tttcacgaat
    18541 ggcgcgctcc agttcgttga agaaatcgac accttccacc agcggcactg agcgtacctg
    18601 cgccccggca atcaccgcgc cataaatatg gatcgggtaa cttggattcg gcaccagcac
    18661 cgtgtcacca tgatccagcg tcgccagcat cagatgcgcc aggccctctt tcgaaccaat
    18721 agtgacgatg gcttctgatt ccgggtcgat ttcaacgtcg tagcgatcct gataccagcg
    18781 ggaaatggcg cgacgtaacc gcggaatgcc gcgtgaagtg gagtaaccat gcgtgtcctg
    18841 gcgctgggcc acagtacata atttttcgac gatatgcggc ggagtcgcac cgtccgggtt
    18901 acccatgctg aaatcgataa tatcttcgcc gcgccgacgc gcagccattt tcagttcagc
    18961 ggtgatgtta aaaacgtagg gcgggagacg atcaatgcgc gtaaagcgac gttcagggcg
    19021 agtgtcagcc ataatttcct cagattaacg ttagcgcccg gaccgtccga gcgacgctgc
    19081 cacaatggtg gctgttttga aaatagcctg attaatttct gtctgtccag cgttttagaa
    19141 catttttatc aatggcttta aatgaggaac tacacttcaa aaacaggaaa tttttctacg
    19201 ctaacaagaa aattaccacc aattttatta acattataat ttcaataaat ttaccagcca
    19261 gaagtgcatt atcaagagat acattgctaa tacaccattt atctttcaat ccccttttaa
    19321 atttatggtt tttcctcaaa aacggcctgc tggtcatcag ccttcaggtt acctatcata
    19381 gaggtttaat ccttattcag agtcacccgt gcacgaaata ttcaacatgc tgctggcggt
    19441 cttcgatcgg gcagcgttaa tgcttatctg cctgttcttt ctcatccgta tccgcctgtt
    19501 tcgcgagctg ttgcacaagt cggcacactc cccaaaagag ttgcttgctg ttaccgccat
    19561 tttctcgctg ttcgccctgt tcagcacctg gtccggcgtt cccgtagaag gctcgctggt
    19621 gaacgtacgt attatcgcgg tgatgtccgg cgggattctg tttggcccgt gggtaggcat
    19681 cattaccggc gtgattgcgg gtattcaccg gtatttaatt gatatcggcg gcgtgacggc
    19741 gatcccctgc tttatcacca gcattctggc gggttgtata tcaggctgga taaacctgaa
    19801 aatccccaaa gcacagcgct ggcgcgtcgg tattctcggc ggcatgttgt gtgagacgtt
    19861 gaccatgatt ctggtaattg tctgggcacc aactaccgcg ttggggatcg atatcgtctc
    19921 taaaatcggc attccaatga tcctcggtag cgtctgtatc ggctttattg tgcttctggt
    19981 gcaaagcgtt gagggcgaaa aagaggccag cgccgcgcgg caggccaagc tggcgctgga
    20041 tatcgccaac aaaacgctac cgctgtttcg ccatgtcaat agcgagtcat tacgcaaggt
    20101 ctgcgaaatt atccgcgatg acattcacgc cgatgcggtg gcgattacta ataccgatca
    20161 tgtgctggcc tatgttggcg tgggtgaaca taactatcag aatggcgatg acttcattag
    20221 cccgactacc cgtcaggcga tgaattacgg aaaaatcatc attaaaaaca atgatgaagc
    20281 ccaccgcaca ccagagattc attccatgct ggtgatccca ttgtgggaga aaggcgttgt
    20341 gaccggaacg ctgaaaattt actactgcca cgcgcatcag ataacctcgt cattacagga
    20401 aatggcggtt ggtctgtcgc aaatcatctc cacgcaactg gaggtttcac gcgccgagca
    20461 gctacgtgaa atggcaaata aggcagagct tcgcgccctg caaagcaaaa ttaatcccca
    20521 ttttctgttt aacgctctga acgctatttc atcgtcaatc cgtctgaatc cggataccgc
    20581 tcgccagttg atctttaatc tgtcgcgtta tctgcgctat aacattgaat taaaagacga
    20641 tgagcaaatc gatatcaaaa aagagctgta tcaaattaaa gactatattg ccattgagca
    20701 ggcccgcttt ggtgacaagc tgacggttat ctatgatatt gatgaagagg tgaattgctg
    20761 cattcccagc ctgctgatcc agccgttggt ggagaacgcc attgtccacg gtattcagcc
    20821 ttgcaaaggt aaaggcgttg tcaccatcag cgttgcagag tgcggaaatc gggtacgcat
    20881 tgcggtgcga gataccgggc acggcatcga tccaaaggtg attgagcggg tcgaagcgaa
    20941 tgaaatgccg ggcaataaaa ttggcctgct gaatgtccat catcgcgtga agttattgta
    21001 tggcgagggg ctgcatatcc gccgcctgga gccggggacg gaaattgcgt tttacattcc
    21061 taaccaacgc accccagtcg cctcacaggc tacgttattg ctttgagccg gagtgatatt
    21121 gtgaaagtca tcattgttga agacgaattc ctggcacaac aggaactgag ctggctaatt
    21181 aaagagcaca gccagatgga gattgtcggc acctttgacg acggtctgga cgtgttgaag
    21241 tttttgcagc ataaccgcgt cgacgccatt tttctggata tcaatattcc gtcgctggat
    21301 ggcgtgttgc tggcgcaaaa catcagccag ttcgcccata aaccgtttat tgtgttcatc
    21361 accgcgtgga aagaacatgc ggtagaagcg tttgaactgg aggcgtttga ctacattctc
    21421 aaaccgtatc aggagtcacg tattaccggg atgctgcaaa aactggaagc ggcctggcaa
    21481 caacagcaga ccagcagtac gcctgccgcg acggtaacgc gtgagaatga caccattaat
    21541 ctggtgaaag atgagcgaat aatcgtcacg ccaattaacg atatctatta cgccgaagcg
    21601 cacgagaaaa tgacctttgt ctatacgcgg cgtgaatcct acgtaatgcc gatgaacatt
    21661 accgaatttt gcagcaaact gccgccgtcg cattttttcc gctgccatcg ctcattttgt
    21721 gtcaatctga acaaaatacg cgaaatcgaa ccgtggttta ataacaccta cattctgcga
    21781 ctgaaagatc tggattttga agtgccggtc agccgcagca aagtgaaaga atttcgccag
    21841 ttaatgcatc tttaatcggg aactttcatg aaagcaccag gcttgcccgc cgatcaacaa
    21901 tttttcgccg atctgttcag cggcctggtg cttaactcgc aactactggg gcgcgtctgg
    21961 tttgccagcc agcctgcctc gttaccggtg ggcagtttat gtattgattt tccccgtctg
    22021 gatatcgtgc tgcgcggcga atacggcaac ctgctggaag caaagcagca gcgaatggtg
    22081 gaaggagaaa tgctgtttat tccggcacgc gcggctaatt taccgatcaa caacaaaccg
    22141 gtgatgctgt taagcctggt gttcgcaccg acctggcttg ggttatcgtt ttacgatagc
    22201 cgcaccacgt cgttgttgca tcctgctcgc cagatccagc ttcccagcct gcaacgcggt
    22261 gaaggtgaag cgatgcttac cgccctcact catcttagcc gttcgccgct ggagcagaat
    22321 atcattcagc cactggtgtt aagtttgctg catctttgcc gcaacgtggt gaatatgccg
    22381 ccgggtaatt cgcaaccgcg cggcgatttt ctctatcaca gcatttgtaa ctgggttcag
    22441 gataattata cccagccgct cacccgcgag agcgtggcgc agttttttaa tatcacgccc
    22501 aatcatctgt caaaactgtt tgctcagcat ggaacgatgc gttttatcga gtatgtgcgt
    22561 tgggtgcgaa tggcgaaggc gaggatgatt ttgcagaaat atcatctgtc aattcatgaa
    22621 gtggcacagc gttgcggttt tccggatagc gactattttt gtcgcgtttt ccggcgtcag
    22681 tttggtctga cgccgggaga gtacagcgcc cgttttcagg gctaacgtca gaaggttaat
    22741 tctgtttcca gcagcgtcag gatactttgt gcatcttgcg cggcaaacaa cgactggcgg
    22801 aagtttttat tcaccagttt acgcgccagc tgcgagaaga ctttcacatg attcatccct
    22861 tcgttagcac ccagcgtcag catgatcacc agttcgactt cgcccatttc tgactgccag
    22921 tcaatcggtt tcgccagccg ggcaatgctg atactggaat gacggatcca ctgagatttg
    22981 gtgtgcggga tcgctacgcc aaaaccaacg ccggtggtaa caatctcttc ccgctgccag
    23041 acatcttctt ccagctcaaa cggatgttca gtgcgcccgt taacgccgag gttgccgcac
    23101 aggaactgga tcgcctgctc tttattgcta aaatcctgat caacaaagat attctccagc
    23161 gccagcagtg ggcgaacgtc ttcttccggc gtaaaggcgg tgagtaacgc ttcaatttcc
    23221 tgcgcactgc ggcattcaca tgcctgacgc gccagttccc gacacgcctc gctatccagt
    23281 tgacgaagct ggcttttcac cgccggaata cgcgggctac tcatactcag ctcatccagg
    23341 cccagcccaa gcagtagcgg cagataacgg ctttcaccgc ccagttcacc gcaaatgcct
    23401 acccatttgc cccgctgatg cgcagtggta actatttgct gcaacatgcg caggaacgat
    23461 ggcgtaatcg ggttatatag cggcgatacg cgcgggttat tacgatcgac cgcatacaga
    23521 tactgggtca tatcgttgga gccgatactg aagaaatcga cctcatcgca gaagtggtcg
    23581 atgatgtagc acaccgacgg cacttccacc atgatcccaa gcgtaatcgt ctctgcatga
    23641 cgcaggccat cgcgcttaag ctcaacgatc gctttttgga tctcgccctt cacccataag
    23701 atctgatcga gactgtggac catcgggatc atcaactggg cgttgccaaa actggcggcg
    23761 cgcaaaatcg cccgtagttg agtgcggaac aggccagcaa attccgggta aatacgtacc
    23821 gcgcgatagc cgaggaacgg gttctcttcc tggggaatat tcagataagg aatgctttta
    23881 tcgccaccga tgtccattgt gcggaagata atcggcttgt cgcccgctgc cagtagcacc
    23941 tgctggtagg cttcaaattg ctcctgctcg tccggcgcgc tgtcgcgatc catatagagc
    24001 atttcagtac ggaacagtcc aacgccttcc gcgccgttgg caaacgcgcc tggcgcttcc
    24061 agagcggtgc cgatattcgc cgcaatatca atacgcttgt tatcacggga ataggccagc
    24121 tgcgcggcgg cctgcgcctg ttgtttttgg cgtttatccg ccagcgtctg tgcgacctga
    24181 taataaccgc tcaccgcgtc attcgggtta atcgccagca cgccgcactg ggcgtcaagc
    24241 accgccggtt gcccggcata acgggcaatc gcatccagcg gcaggccgct cagtaccggg
    24301 atcgccgagg cgcgggccag aatcagggta tgcgaggtgc gcccagtttt ctccagaatc
    24361 atgcctgcaa gattttttaa atcgaggctc aaaaactggc ttggggttaa atcctcggct
    24421 accagaatag tcggtttttc cagcaccaga ttgttgcgcg gcttcagttc cggccaggtg
    24481 atatgcagca actgttcgct aatatcgcga atgtcgctaa cacgttcgcg cagataatca
    24541 ctggcagaag cagaaagttt ggcgcaaacc tgctccatat tgctgatgat cgccgccccc
    24601 agcccttgat gctgttctgt catcagacga cggatattgc ccgcgaattc atcatcctga
    24661 atcagcgaca aatgggcgct aaggatagtt ttgctttcgc cgtcactctc acgcaattgc
    24721 tggttcagtt gctcggcaag cgttgcaagg ctgtgctcca gccgggtgga atcttgcgca
    24781 ctggcgggga ttgcccgata actgtcgagg ctgtcgcttt gtaacagggt cagcgtaccc
    24841 acgccgacgc tgcttgccag cacattgccg tacagtaaat ccgggttcag gcggcttaat
    24901 gaacgcggca gcggatgcgc cgtcagttct gcctgcgttg gctggatgct gtcgctgtcg
    24961 ataaagcgca cctggatgta ctcttccaac acgcgctgcg cctgctcttc atcgctgccg
    25021 ctaatgttca ggctgcaact gtcattaaat aaagtaccgg tgccaatcag cgccagcgag
    25081 cttttcgcat cggcctttgc gttctggcga tggttgataa aggtgatttc gctttgccac
    25141 tggctgcact gttctttaag ttcccacgcc ggacgagcat gaagaccgtt tggcaaagga
    25201 cagagaaatt gaatcgttaa cataaccgct ccgggttaat caggagatca tctgaaatcc
    25261 gtcagttgaa caaccgtctc acgcgtaaga cgtttaataa gggcagataa aagctgctgc
    25321 atctgcaaaa tgtcacggca atcggcaatc gatgcggcgc aatgtccgtg gcgggttgct
    25381 ggccccatca ccactgtagg cacgccggtg ccggttaagt gcaccgctcc gccgtccgtg
    25441 ccgccgttgc tgaacatatc tgcctgtaac ggcacgccaa tttctgccgc cacggtttcg
    25501 atccacgcgg taagttttgg cggcgcaatc agcgacttgt cgcttaacac cagcatcggc
    25561 ccgttacaaa tctgacgatg gttagccgcg ccataatcaa agtttttcgc ccagcaggcg
    25621 gtatcaagca caatggcgac atccggcgac accgcgcggg tggcagtttg cccgccgcgt
    25681 acccccacct cttcgctgga actggccacc agccacactt ccgcaggcag ttcagcgctg
    25741 tgtagttcgc gcagtaacgt caccagcagg tagcaaccga ggcggtcatc aaaggctttc
    25801 cccatcaccc gctggtgagg gagaacctga aaagttgtat caaaggtgac gcgatcgcct
    25861 ggacgaattc ccgcctgcat cacttcgtca tacgagcgcg taccaatgtc cacgcgcatg
    25921 gcgctgacgt cattcccctg ccggtcgccg tcaagcaggc ctggaatttt gcactcttca
    25981 cgggtggtga tgcgcaccgg ctgcagctgg cgggcagcca tgcgcacgtt gccaaccggc
    26041 agcacatcaa ttgccccttc gcgggagatg ctgcgcacca taaatcccac ttcgtccata
    26101 tgggcgcaga tcatcacctt cggccctgtc gattcattga ggcggatcag caccgatccc
    26161 agaccatcaa atcgcacttc tttttgcagg cgatccgctt cttccagcag gatctgccgc
    26221 acttcctgtt ccgaggaggc gatcgcatct gcctcgctca acgcttttaa tagcgataaa
    26281 tccattatgc ctctcccgtg agcaacactg ttttcggcat ggcgtagagc acttctgcgc
    26341 cttgcggggt aaccagcaca acatcttcga tgcgcacgcc cccttgccct ggcaaataaa
    26401 tccccggctc cacggtcagc aacatgcctg gctgtagcgt cgtggtgtcc cgcggtgaaa
    26461 aacgcggatc ttcatggact tcaatgccga tagcgtgacc agtgttatga ccgaaatagt
    26521 cgccaaatcc agcctcggta atgacccggc gcgcggcgtc gtcaatctgc tggcagcgca
    26581 cgccggggcg aattgcagag attgccgcga gctgtgcctg caggacaatc tgatagacgt
    26641 caaacagcgg gtgagattcg gcgctcaccc cttcgccatt caccagcaag gtgcgcgtca
    26701 tatcagagca gtagccctga tacagcgcac caaaatcgag agtgacaaac tcgcccgctg
    26761 caacaatctt gtcgctggct ttgccgtgcg gcagcacccc gcgccagccg ctggcgacaa
    26821 tggtgtcaaa agaggctttt tctgcgccct gctggcgcat aaaccactcc agttcagcgg
    26881 ctatctcgcg ctcgctcatc cccgcctgaa taaagcggcg aatatgctcc gctccgcgat
    26941 cggcaatccc acaggcgagg cggattatct ccacctcctc tggcgttttg atttgccgca
    27001 gcacatccgg cgtggcgcta accagtttcg cattgagttc agacttccag cggtgcgcgg
    27061 tttcccaact cacctgctgg ccttcaaaac cgagcgtttg caactgctca tcggcaatga
    27121 tttgattgac gatagtggta agcgtgttcg tcgcgtcaag caaatgcagc tggtagcctt
    27181 gcgcacgggc ttccacctca acgaaatagc tcgaatctac cagaatgtgc gcactttcac
    27241 ggctaataac cacatagcct gatccggtgg agatccccag atgcggctgt ttgttctgcc
    27301 gtgaggagag aagcactgca tccagttgtt gctccttaag ccagtcgcgc agcgaagcga
    27361 gtaatgtcat ctggattttc cttcttacag gctatcgatt aacaatttgc ctttacggaa
    27421 catcatcaga cgcaggaaca ccaccatcag cgcagttatg actgccccca gcgcgatccc
    27481 cgccatatag acgccaaggt tagtgaccag cggccatgcc cagatagcgg attccgggaa
    27541 ccattgcact gcgcccagcc agacagcggc ggttgagccg acaatcgcgc cgaccatata
    27601 cgacggaatg gcggtgatgg ggctttccag cgcaaacgga atcgcaccct cactaatccc
    27661 cataaaggca aggaacatcg cggtcttacc ctgcggataa agttgagcgt tgaacaggcg
    27721 tttgccggtt aaacgacggt caataatggt cgccagcccc agaccaatcg gaggaataac
    27781 gatagcgata gaacgagcgg tgaccggtaa tacgtggtca gtggtaaagc tgaaggcaac
    27841 gaaacctgcg gctttgttga tcgggccacc aaggtcgatt gctgtcgccg cggcgatccc
    27901 cattgcgtac atcagcgcgc ccttctcacc tgcggcagtc agcacggtac ggataacgcc
    27961 gttgatccag ccgccaaagg gggtaatgac gtagtacatc gccagcatga caaaaatggc
    28021 ggaaagaatc ggtagcaaaa atgtggtttt gaacgctaac aggaaatccg gtaactggat
    28081 tttctggttc atccacttca caaggtaacc cgcgacgata gaaataatca gcgcaccaat
    28141 gaaggtggac ggcaccggcg aagaggtcgc ccattgcata gtgctgggat cgaagttcag
    28201 cagttgcgtc ggctgggtag acatcaagcc gccgataaaa ccagccggga acgccagttt
    28261 gccaccgata gagttcgcca caaaagcagc aaacatcgga atggcaaaac caaacaacac
    28321 gccgccgaag gactgcgaca gccaggcaaa tttcagtaag gagaggtcga aaccggagaa
    28381 tttcccgcta ttaagagcat ccatgatgcc gatctcagca ggaattttaa gccagctata
    28441 agcaatcagc tggctgaaag cgaggatcac accgcccata attaaggtcg gcaccatgcg
    28501 tgaaatccct gacatcacat gctgcgggag ttcaccccag aagctgcttt tagaggcctg
    28561 cggattctta actgccgctg ccgcaccgga tgcgccaggc acaacggttg cactgcgttt
    28621 tttaatggcc ataacaatta tccctgtcga atattactgt tgttcagagg caatcatctc
    28681 ttcgatttct ttgatgatgc ccgcagcgtt tttaattgcg tcctgcaaag tgatttcata
    28741 aacgtcgcgt gattcgaaac gctcattatc ttccggggta actgccacgg agtggatgat
    28801 gatggttgct tcggcgatat cctgcgccgt caggcgattc tggataccgt ccgcgccctg
    28861 ggtttcaatt ttcacttcat aaccggcttc taccgccgct tcttccaacg cctgagcggc
    28921 cataaaggtg tgagccaggc ccattgggca ggcacataag gcaatcagtt tcttactcat
    28981 cgttaattcc tcattcagtg atagttgaca agtgaaatta tgaacgtgca aaacaaatcg
    29041 ccgttaccag acaaataatg catttactgg agaattaatc ccgctgtacg gaagtgtgac
    29101 gcaggtcggc cttgtgaggg gacacaaaga aaaattgaat taactgtatg atttaaacga
    29161 ttatcgggag agttacctcc cgatataaca ggaaggattt acagaatgtg ccctaaggtc
    29221 tggcgtaaat gtgcaccgga accgagaaga cccggattgt catggacgat gagatacacc
    29281 ggaatatcat ggacatattc tttaaagcgc cctttatctt caaatgcagc acggaaacca
    29341 gaggctttga agaactcaag gaagcgcggc acgataccgc ccgcaataaa cacgccgcca
    29401 aatgtcccga gattgagcgc cagattgccg ccaaaacggc ccataatgac gcaaaacagc
    29461 gacaacgcgc ggcggcaatc ggtacagctg tcagccagcg cgcgttcggt aatatctttt
    29521 ggcttgagat tttctggcag gcggttgtca gctttcacaa ttgcgcgata caaattcacc
    29581 agcccagggc cagaaagcac gcgctccgcc gaaacatgac caatttccgc acgcaatatt
    29641 tcgaggataa tggcctcttc ttcactattc ggcgcaaaat caacgtgacc gccttcgccc
    29701 ggcaagctta cccaacgctt atcgacatgg accagatgcg caaccccaag ccctgttccg
    29761 gcaccgtaaa ccgcaatagg tttaccttct accggttctg cgccaccaaa ctgaatcaga
    29821 tgctcttttt tcagcatcgg gatcgccatc gatacagcgg taaaatcgtt aataatttcc
    29881 agatggctaa aaccgagatt ctttttcatt tcggcaattg agaacgccca ggtatggttg
    29941 gtcattgcca cccagtcacc ggtaattggg caagcgatgg caatacagcc gtctttcacc
    30001 tcgaccttat gttcttcaag ataaacgcga atgaccgctt cgaggctggg gtaatcaagc
    30061 cctgaatagg tcttagcctg cgagatttca ccactggcaa tatcacacag agcaagacgt
    30121 gcgttggtgc cgcccacatc accgactaat gcatacttta tcattcttca actgctccgc
    30181 taaagtcaaa ataattcttt ctcacactgt aaatacctgg gggcataaca acaacgccgg
    30241 aaaggcaggc tccctgtaaa tatcgatctg ggtcacacat ttactttatc gtttcagcac
    30301 caattgcagc gatgcctttt tgcaagctgg gcaaactaag tatctgaccc cgcataagga
    30361 atagaacatg ctccatccgc gagccagaac catgttgtta ttatcgctcc ccgccgtggc
    30421 aattgggatt gcgtccagtc ttattctgat tgtggtgatg aaaatcgcct cggtattaca
    30481 gaatttgctc tggcaacgac tgccgggaac tctggggata gcccaggatt cacctctctg
    30541 gatcatcggt gtattaacgc taacgggtat tgcggtgggg ttggttatcc gtttcagcca
    30601 gggtcatgcc ggaccagacc ccgcctgtga accgctgatc ggcgcaccag ttccgccctc
    30661 tgcgctacca ggacttatcg tagcattaat tctcggtctt gctggcggcg tcagcctggg
    30721 gccggaacat ccgatcatga ccatcaatat cgcccttgcc gtcgccattg gcgctcgtct
    30781 gttaccgcgc gtcaaccgaa tggagtggac tattttagcc tctgccggaa ccatcggcgc
    30841 gctgtttggc acacctgttg cagcggcgtt gatattttcg caaaccttaa atggcagtag
    30901 tgaagttccg ctatgggatc gtctctttgc gccgttaatg gcggcagcag ctggtgcact
    30961 aactaccgga ttatttttcc atccccattt ttcactgccc attgcgcatt acggacagat
    31021 ggaaatgacc gatattctca gcggtgcaat tgtcgcggcg attgccatcg cagcagggat
    31081 ggtcgccgta tggtgcttac cacggttgca cgcgatgatg aatcaaatga aaaatccggt
    31141 gctcgtgctg ggtattggcg gatttattct cggtattctg ggggttattg gtggaccagt
    31201 ttcgctgttt aaagggctgg atgagatgca gcagatggtg gcaaatcagg ctttcagcac
    31261 cagcgattac tttttgctgg cggtaattaa acttgccgcc ctggtcgttg ctgccgccag
    31321 tggctttcgc ggtgggcgaa tcttcccggc agtgtttgtc ggcgtggcat tagggttgat
    31381 gctgcatgag cacgtacccg ccgtaccagc ggcaataacc gtttcttgcg ctattctcgg
    31441 catcgtgctg gtggtaacac gcgatggctg gttaagtctt tttatggcgg cggtcgttgt
    31501 acccaatacc acattgctac cgctgctctg tatcgtcatg cttccggcat ggctgttatt
    31561 agcaggtaag ccgatgatga tggtcaatcg tccgaagcaa cagccacccc acgataacgt
    31621 ttagcaaaaa atgctctcct ttatgattta agagttatgg cgatgatacg gggctttacc
    31681 tccccgtaat attgcgttaa caggccgctg acggcttcga tcgtgaagga gaataacaat
    31741 gttcaggtca ctgtttctgg cggccgccct gatggcattt accccgcttg cagcaaacgc
    31801 aggtgaaatc accctactgc catcaatcaa attacaaatt ggcgatcgcg atcattacgg
    31861 taattactgg gacggtggtc actggcgcga ccgtgactac tggcatcgca attatgagtg
    31921 gcgcaaaaac cgttggtggc gtcatgataa tggctatcat cgtggctggg ataagcgtaa
    31981 agcgtatgag cgtggctatc gtgaaggctg gcgcgatcgt gacgatcatc gcggaaaagg
    32041 ccgcggacat ggacaccgcc attaaacaca ttcgccaatg gagcacaatg cctgatgcga
    32101 cgctagcgcg tcttatcagg cctacaaacc ggatctttaa cgcgtagggc ggataaggcg
    32161 tttacgccgc atccgccaat agtgccagat gcgacgctca ttcaactaca atcccagcgc
    32221 cgtccccacc aacaaccaga tattcagcgc cacgaccagc actacaatca cccagcctgt
    32281 ctgttttacg cgtttgctgt tcaccagatc gcccatcaac ttgctgtcac tggtgaaaat
    32341 cagcagtgga accagcgcca gggcgatacc aaaacttaac agcacctgac tcataaccag
    32401 aatccgtgtc ggatctaatc ccatcagaat gacaataaat gacggcagca tggtgactgt
    32461 acgacgcacc cacagcggga tatggaagcg aatgaacccc tgcatcacca cctgccctgc
    32521 cagtgtcccc actaccgttg aggacagtcc ggcagcaacc agacttaacc caaagaccgt
    32581 tgccgcagca tggcttaaca gcggttgcag cgtcagataa gcctcatcaa gatcggcaac
    32641 accagtatga ccagaaaagt ggaacgccgc cgcagctgta gccatcatcg ccagattgac
    32701 aaaaccggca atagtcatgg cgatagccac atcccatttg gtggcggaat aacgttgttg
    32761 acgcgaaccg ccatgtaaat gctgagtgag cgaggagtgc aaataaatca catgcggcat
    32821 aatcgtcgcc cctaacacgc ctgctgccag gaagaccgct tccgaagtag gtaaactcgg
    32881 gatcaccatt cctttaccca gctgcgccag gttaggctgg gagaaaatca actcgacaat
    32941 gtaagccgcg gcaacaaaca acagtaaccc gccaatcact ttctccagcg gtttttgccc
    33001 gcgacgttgc agcattaaaa tcaggaaagt cgcgatcccc gtcagcaccg cgccctgcaa
    33061 caacgaaaca ccaagaatga gtttaaaacc gatcgccgca ccaataaatt ccgccaggtc
    33121 ggttgccatc gcaataattt ctgcctgaac ccaatagaac cacactacgg gacgcggata
    33181 gtgatcgcga atctgctccg ccagattttt accggtggca atccctagtt tggcagagag
    33241 gatctgaatc agcatcgcca tcaggttggc ccaaacgaca acccacagta gctgatagcc
    33301 gaagctggca cccgcctgaa tattggtcgc aaagttaccg ggatcgatat aaccaatcgc
    33361 cgcaatgaac gcaggtccca ttaatgcgag cctcatcttg cgcgccgccc gtccgctgct
    33421 actctcaacg cgatagttcg tcatcttgtg cctctaaaac atagcctttg ctatgtttca
    33481 tgctatgata aacgagaatg attatcaaat tcatttaaat ggattgtggt gatttctgtg
    33541 atagaccagg attatgacta cgaaaagatt gatgacttga atgttatggt tatgtttaat
    33601 gttagcacat ttacataact ttcagcttcc atacacaaca tagcagaaat gtatgacaga
    33661 tcactatttt tgaagcctgt cacaggacgt cattatagtg tgtgtcagat ctcgttttcc
    33721 ttaaccatgt tacatagaat gtgcacggaa atttaacctg cctcatattt ggagcaaata
    33781 tggaccgcgt ccttcatttt gtactggcac ttgccgttgt tgcgattctc gcactgctgg
    33841 taagcagcga ccgcaaaaaa attcgtatcc gttatgttat tcaactgctt gttatcgaag
    33901 tgttactggc gtggttcttc ctgaactccg acgttggttt aggcttcgtg aaaggcttct
    33961 ccgaaatgtt cgaaaaactg ctcggatttg ccaacgaagg gactaacttc gtctttggta
    34021 gcatgaatga tcaaggcctg gcattcttct tcctgaaagt gctgtgccca atcgtcttta
    34081 tctctgcact gatcggtatt ctccagcaca ttcgcgtgtt gccggtgatc atccgcgcaa
    34141 ttggtttcct gctctccaaa gtcaacggca tgggcaaact ggaatccttt aacgccgtca
    34201 gctccctgat tctgggtcag tctgaaaact ttattgccta taaagatatc ctcggcaaaa
    34261 tctcccgtaa tcgtatgtac accatggctg ccacggcaat gtccaccgtg tcgatgtcca
    34321 tcgttggtgc atacatgacc atgctggaac cgaaatacgt cgttgctgcg ctggtattga
    34381 acatgttcag cacctttatc gtgctgtcgc tgatcaaccc ttaccgtgtt gatgccagtg
    34441 aagaaaacat tcagatgtcc aacctgcacg aaggtcagag cttcttcgaa atgctgggtg
    34501 aatacattct ggcaggtttc aaagttgcca ttatcgttgc cgcgatgctg atcggcttta
    34561 tcgccctgat cgctgcgctg aacgcactgt ttgccaccgt gactggctgg tttggctaca
    34621 gcatctcctt ccagggcatt ctgggctaca tcttctatcc gattgcatgg gtgatgggtg
    34681 ttccttccag tgaagcactg caagtgggca gtatcatggc gaccaaactg gtttccaacg
    34741 agttcgttgc gatgatggat ctgcagaaaa ttgcttccac gctctctccg cgtgctgaag
    34801 gcatcatctc tgtgttcctg gtttccttcg ctaacttctc ttcaatcggg attatcgcag
    34861 gtgcagttaa aggcctgaat gaagagcaag gtaacgtggt ttctcgcttc ggtctgaaac
    34921 tggtttacgg ctctaccctg gtgagtgtgc tgtctgcgtc aatcgcagca ctggtgctgt
    34981 aagaccatac ataaaaaagc cggggataat tc
//
LOCUS       DADMJB010000023        34118 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.023, whole genome shotgun sequence.
ACCESSION   DADMJB010000023 DADMJB010000000
VERSION     DADMJB010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 34118)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34118)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34118
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.023"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..318)
                     /locus_tag="JN078_001011"
     CDS             complement(<1..318)
                     /locus_tag="JN078_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY9040289.1"
                     /translation="MVTFETVMEIKILHKQGMSSRAIARELGLSRNTVKRYLQAKSEP
                     PKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIR
                     SLSV"
     gene            1672..2451
                     /gene="ipaJ"
                     /locus_tag="JN078_001012"
     CDS             1672..2451
                     /gene="ipaJ"
                     /locus_tag="JN078_001012"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858255.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector cysteine
                     protease IpaJ"
                     /protein_id="HAY9040290.1"
                     /translation="MSEQRKPCKRGCIHTGVMLYGVLLQGAIPREYMISHQTDVRVNE
                     NRVNEQGCFLARKQMYDNSCGAASLLCAAKELGVDKIPQYKGSMSEMTRKSSLDLDNR
                     CERDLYLITSGNYNPRIHKDNIADAGYSMPDKIVMATRLLGLNAYVVEESNIFSQVIS
                     FIYPDARDLLIGMGCNIVHQRDVLSSNQRVLEAVAVSFIGVPVGLHWVLCRPDGSYMD
                     PAVGENYSCFSTMELGARRSNSNFIGYTKIGISIVITNEAL"
     gene            complement(3396..4325)
                     /locus_tag="JN078_001013"
     CDS             complement(3396..4325)
                     /locus_tag="JN078_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Virulence regulon transcriptional activator
                     VirB"
                     /protein_id="HAY9040291.1"
                     /translation="MVDLCNDLLSIKEGQKKEFTLHSGNKVSFIKAKIPHKRIQDLTF
                     VNQKTNVRDQESLTEESLADIIKTIKLQQFFPVIGREIDGRIEILDGTRRRASAIYAG
                     ADLEVLYSKEYISTLDARKLANDIQTAKEHSIRELGIGLNFLKVSGMSYKDIAKKENL
                     SRAKVTRAFQAASVPQEIISLFPIASELNFNDYKILFNYYKGLEKANESLSSTLPILK
                     EEIKDLDTNLPPDIYKKEILNIIKKSKNRKQNPSLKVDSLFISKDKRTYIKRKENKTN
                     RTLIFTLSKINKTVQREIDEAIRDIISRHLSSS"
     gene            complement(4542..4778)
                     /locus_tag="JN078_001014"
     CDS             complement(4542..4778)
                     /locus_tag="JN078_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HAY9040292.1"
                     /translation="MIKEKILSIVAFCYGIAYSKLSEETKFIEDLSADSLSLIEMLDM
                     ISFEFNLRIDESALEHIITIGDLISVVKNSTKSI"
     gene            complement(4782..6683)
                     /gene="ipaA"
                     /locus_tag="JN078_001015"
     CDS             complement(4782..6683)
                     /gene="ipaA"
                     /locus_tag="JN078_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector invasin IpaA"
                     /protein_id="HAY9040293.1"
                     /translation="MHNVNNTQAPTFLYKATSPSSTEYSELKSKISDIHSSQTSLKTP
                     ASVSEKENFATSFNQKCLDFLFSSSGKEDVLRSIYSNSMNAYAKSEILEFSNVLYSLV
                     HQNDLNFENEKGLQKIVAQYSELIIKDKLSQDSAFGPWSAKNKKLHQLRQNIEHRLAL
                     LAQQHTSGEALSLGQKLLNTEVSSFIKNNILAELKLSNETVSSLKLDDLVDAQAKLAF
                     DSLRNQRKNTIDSKGFGIGKLSRDLNTVAVFPELLRKVLNDILEDIKDSHPIQDGLPT
                     PPEDMPDGGPTPGANEKTSQPVIHYHINNDNRTYDNRVFDNRVYDNSYHENPENDAQS
                     PTSQTNDLLSRNGNSLLNPQRALVQKVTSVLPHSISDTVQTFANNSALEKVFNHTPDN
                     SDGIGSDLLTTSSQERSTNNSLSRGHRPLNIQNSSTTPPLHPEGVTSSNDNSSDTTKS
                     SASLSHRVASQINKFNSNTDSKVLQTDFLSRNGDTYLTRETIFEASKKVTNSLSNLIS
                     LIGTKSGTQERELQEKSKDITKSTTEHRINNKLKVTDANTINYVTETNADTIDKNHAI
                     YEKAKEVSSALSKVLSKIDDTSAELLTDDISDLKNNNDITAENNNIYKAAKDVTTSLS
                     KVLKNINKD"
     gene            complement(6692..7690)
                     /gene="ipaD"
                     /locus_tag="JN078_001016"
     CDS             complement(6692..7690)
                     /gene="ipaD"
                     /locus_tag="JN078_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system needle tip complex
                     protein IpaD"
                     /protein_id="HAY9040294.1"
                     /translation="MNITTLTNSISTSSFSPNNTNGSSTETVNSDIKTTTSSHPVSSL
                     TMLNDTLHNIRTTNQALKKDLSQKTLTKTSLEEIALHSSQISMDVNKSAQLLDILSKK
                     EYPINKDARELLHSAPKEAELDGYEMISHRELWDKIAKSINNINEQYLKVYEHAVSSY
                     TQMYQDFSAVLSSLAGWISPGGNDGNSVKLQVKSLKDELTKLKEKYKDKPLYPANNTV
                     SKEQANKWLTELGGTIGKVSEKNGGYVVNINMTPIDNMLKSLDNLGGNGEVVLDNAKY
                     QAWNAGFSAEDETMKNNLQTLVQKYSNANSIFDNLVKVLSSTISSCTDTDKLFLHF"
     gene            complement(7741..8832)
                     /gene="ipaC"
                     /locus_tag="JN078_001017"
     CDS             complement(7741..8832)
                     /gene="ipaC"
                     /locus_tag="JN078_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858260.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS translocon subunit IpaC"
                     /protein_id="HAY9040295.1"
                     /translation="MEIQNTKSAPILYTDISTKQTQSSSETQKSQNYQQLAAHIPLNV
                     GKNPVLTTTLNDDQLLKLSEQVQHDSEIIARLTDKKMKDLSEMSHTITPENTLDISSL
                     SSNAVSLIISVAVLLSALRTAETRLGSQLSLIAFDATKSAAENIVRQGLAALSSSITG
                     AVTQVGITGIGAKKTHSGISEQKGALRKNLATAQSLEKELAGSKLGLNKQIDTNITSP
                     QTNSSTKILGKNKLAPDNISLSTEHKTSLSSPDISLQDKIDTQRRAYELNTLSAQQKQ
                     NIGRATMETSAVAGNISTSGGRYTSALEEEEQLISQASSKQAEEASQVSKEASQATNQ
                     LIQKLLNIIDNINQSRNSTASQIAGNIRA"
     gene            complement(8852..10594)
                     /gene="ipaB"
                     /locus_tag="JN078_001018"
     CDS             complement(8852..10594)
                     /gene="ipaB"
                     /locus_tag="JN078_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system translocon subunit
                     IpaB"
                     /protein_id="HAY9040296.1"
                     /translation="MHNVSTTTTGLPLAKILASTELGDNTIQAANDAANKLFSLTIAD
                     LAANKNINTTNAHSTSNILIPELKAPKSLNASSQLTLLIGNLIQILGEKSLTALTNKI
                     TAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQ
                     IQTRLSELAPDSPENKKLRREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLE
                     KEIDSFSAFSNTASAEQLSTQQKSLTGLASVTQLMATFIQLVGKNNEESLKNDLALFQ
                     SLQESRKTEMERKSDEYAAEVRKAEELNRVMGCVGKILGALLTIVSVVAAAFSGGASL
                     ALAAVGLALMVTDAIVQAATGNSFMEQALNPIMKAVIEPLIKLLSDAFTKMLEGLGVD
                     SKKAKMIGSILGAIAGALVLVAAVVLVATVGKQAAAKLAENIGKIIGKTLTDLIPKFL
                     KNFSSQLDDLITNAVARLNKFLGAAGDEVISKQIISTHLNQAVLLGESVNSATQAGGN
                     VASAVFQNNASKNLADLTLSKYQVEQLSKYIGDAIEKFGQLQEVIAELLASMSNSQAN
                     RTDVAKAILQQTTA"
     gene            complement(10600..11067)
                     /gene="ipgC"
                     /locus_tag="JN078_001019"
     CDS             complement(10600..11067)
                     /gene="ipgC"
                     /locus_tag="JN078_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system translocator chaperone
                     IpgC"
                     /protein_id="HAY9040297.1"
                     /translation="MSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAY
                     DFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN
                     DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAIQDIKE"
     gene            complement(11125..11751)
                     /gene="ipgB"
                     /locus_tag="JN078_001020"
     CDS             complement(11125..11751)
                     /gene="ipgB"
                     /locus_tag="JN078_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein IpgB"
                     /protein_id="HAY9040298.1"
                     /translation="MQILNKILPQVEFAIPRPSFDSLSHNKLVKKILSVFNLKQRFPQ
                     KNFGCPVNINKIRDSVIDKIKDSNSGNQLFCWMSQERTSYVSSMINRSIDEMAIHNGV
                     VLTSDNKKNIFAAIEKKFPDIKLDEKSAQTSISHTALNEIASSGLRAKILKRYSSDMD
                     LFNTQMKDLTNLVSSSVYDKIFNESTKVLQIEISAEVLKAVYRQSNTN"
     gene            complement(11767..12156)
                     /gene="ipgA"
                     /locus_tag="JN078_001021"
     CDS             complement(11767..12156)
                     /gene="ipgA"
                     /locus_tag="JN078_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system chaperone IpgA"
                     /protein_id="HAY9040299.1"
                     /translation="MCRKLYDKLYEITGAKLDFNDKNQAFILLEEQIPVCITDNDEYI
                     FLTGLLNEHELFTENIINPEHILILNYSLSRDYGSSICLLPDTHQCVLTKKHYKKYLS
                     PDELIESLYEFLFCIKLTIANITSEVN"
     gene            complement(12169..13653)
                     /gene="icsB"
                     /locus_tag="JN078_001022"
     CDS             complement(12169..13653)
                     /gene="icsB"
                     /locus_tag="JN078_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector IcsB"
                     /protein_id="HAY9040300.1"
                     /translation="MILKISNFIDASNTKGPIRVEDTEHGPILVAQKFNLKDLFFRTL
                     STINAKINSQILNEQLKNYRLANQKSLLLFLKTLASEKSAESAFAAYEAVKNSIQHSF
                     TGKDIKLMLNTAESFHGIGTAKNLERHLVFRCWGNRGITHLGHTSISIKNNLLQEPTH
                     TYLSWYPGGNVTKDTEINYLFEKRSGYSVDTYKQDKLNMISDQTAERLDAGQEVRNLL
                     NSKQDQNNNKKIFFPRANQKKDPYGYWGVSADKVYIPLSGDNKTKDGKISYNLFGLDE
                     TNMSKFICQKKADAFRQLANYKLISKSENCAGMALNVLKAGNSEIYFPLPDVKLVATP
                     NNVYAYANKVRQRIESLNQSYNEIMKYIESDFDLSRLTQLRRSYLKSFNKINLIHTPK
                     TFKPLSISLYKHPTENVSSEDFDAVINACHSYLVKSAPSNMSRVLNELKTGATDKKEV
                     IIEKSIKTIDYYNSLKSPDLGTKLYIHDLLQVNKLLLNNSHSNI"
     gene            13967..15583
                     /locus_tag="JN078_001023"
     CDS             13967..15583
                     /locus_tag="JN078_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector inositol
                     phosphate phosphatase"
                     /protein_id="HAY9040301.1"
                     /translation="MHITNLGLHQVSFQSGDSYKGAEETGNQKGVSVISYQRVKNGER
                     NKGVEALNRLYLQNQTSLTGKGLLFARDRAAVFYEAIKLAGGDTSKIKAMMEQLDTYK
                     LGEVDKRNINELNKVISEEIRAQLGIKNKKELQSEIKQIFTNYLNNKNWEPINKNINY
                     NGKNYGFQLTPASHMKIGNKNIFVKEYNGKGICCASTRESKHIANMWLSKVVDDEGKE
                     IFSGIRHGVISAYGLKKNSSERAVAARNKAEELASAALYSRQELLSQALSGKTVDLKI
                     VSTSLLTPTSLTGGEESMLKDQVKALKELNSKRGEPTKLLIRNSDGLLQEVKVNLKVV
                     TFNFGVNELALKMGLGWRNVDKLNGESICSLLGDNFLKNGVIGGWAAEAIEKNPPCKN
                     DVIYLANQIKEILNKKLQKNDNGEPYKLSQRMALLAYTIGAVPCWNCKSGKDRTGMQD
                     AEIKREIIRKHETGQFSQLNSKLSSEEKRLFSTILMNSGNMEIQEMNTGVPGNKVMKK
                     LPLSSLELSYAERIGDPKIWNMVKGYSSFV"
     gene            15593..15955
                     /gene="ipgE"
                     /locus_tag="JN078_001024"
     CDS             15593..15955
                     /gene="ipgE"
                     /locus_tag="JN078_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system chaperone IpgE"
                     /protein_id="HAY9040302.1"
                     /translation="MEDLADVICRALGIPSIDTDDQAIMLDDDVLIYIEKEGDSINLL
                     CPFCALPENINDLIYALSLNYSEKICLATDDEGGSLIARLDLTGINEFEDIYVNTEYY
                     ISRVRWLKDEFARRMKGY"
     gene            15955..16413
                     /gene="ipgF"
                     /locus_tag="JN078_001025"
     CDS             15955..16413
                     /gene="ipgF"
                     /locus_tag="JN078_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein IpgF"
                     /protein_id="HAY9040303.1"
                     /translation="MSRFVFIFLCFIPYLGRADCWDKAGERYNIPSSLLKAIAEKESG
                     FNKFAVNVNNNGSKDYGIMQINDFHSKRLREMGYTEEMLISHPCLSVHYAAKLLNEFM
                     LMYGRGWEAVGAYNAGTSPKKKKERLKYAEDIYKRYLRIAAESKQNNRRI"
     gene            16422..17537
                     /gene="mxiG"
                     /locus_tag="JN078_001026"
     CDS             16422..17537
                     /gene="mxiG"
                     /locus_tag="JN078_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system protein MxiG"
                     /protein_id="HAY9040304.1"
                     /translation="MSEAKNSNLAPFRLLVKLTNGVGDEFPLYYGNNLIVLGRTIETL
                     EFGNDNFPENIIPVTDSKSDGIIYLAISKDNICQFSDEKGEQIDINSQFNSFEYDGVS
                     FQLKNMMEDKSRVHILNGMYNKPSVFFFFAVIVVLIIIFSLSLKKDEVKEIAEIIDDK
                     RYGIVNTGQCNYILAETQNDAVWASVALNKSGFTKCRYILVSNKEINRIQQYINQRFP
                     YINLYVLNLVSDKAELLVFLSKERNSSKDTELEKLKNALIVEFPYIKNIKFNYLSDHN
                     AREDAKGIFTKVNVQYKEICETNKVTYSVREELTDEKLELINRLISDHKNVYGDQYIE
                     FSVLLIDDDFKGKSYLNSKDSYVMLNDKHWFFLDKNK"
     gene            17545..17796
                     /locus_tag="JN078_001027"
     CDS             17545..17796
                     /locus_tag="JN078_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EscF/YscF/HrpA family type III secretion system
                     needle major subunit"
                     /protein_id="HAY9040305.1"
                     /translation="MSVTVPDKDWTLSSLSETFDDGTQTLQGQLTSALNALAENPSNP
                     QLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAIIQNFR"
     gene            17809..18102
                     /gene="mxiI"
                     /locus_tag="JN078_001028"
     CDS             17809..18102
                     /gene="mxiI"
                     /locus_tag="JN078_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system inner rod protein
                     MxiI"
                     /protein_id="HAY9040306.1"
                     /translation="MNYIYPVNQVDIIKASDFQSQEISSLEDVVSAKYSDIKMDTDIQ
                     VSQIMEMVSHPESLNPESLAKLQTTLSNYSIGVSLAGTLARKTVSAVETLLKS"
     gene            18108..18833
                     /locus_tag="JN078_001029"
     CDS             18108..18833
                     /locus_tag="JN078_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EscJ/YscJ/HrcJ family type III secretion inner
                     membrane ring protein"
                     /protein_id="HAY9040307.1"
                     /translation="MIRYKCFILFLLLMLIGCEQREELISNLSQRQANEIISVLERHN
                     ITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNPERVDISQMFPTDSLVSSPRAE
                     KARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEKNISSKPMHISVIAIYDSPKESE
                     LLVSNIKRFLKNTFSDVKYENISVILTPKEEYVYTNVQPVKEIKSEFLTNEVIYVFLG
                     MAVLVVILLVWAFKTGGFKRNKI"
     gene            18830..19357
                     /locus_tag="JN078_001030"
     CDS             18830..19357
                     /locus_tag="JN078_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion apparatus protein OrgA/MxiK"
                     /protein_id="HAY9040308.1"
                     /translation="MIRMDGIYKKYLSIIFDPAFYINRNRLNLPSELLENGVIRSEIN
                     NLIINKYDLNCDIEPLSGVTAMFVANWNLLPAVAYFIGSQESRLINHSEMVISYYGGK
                     ISKQGEAAIRSGFWHLIEWKENISVGIYERINLLFNPIALEGNYTPVERNLSRLNEGM
                     QYAKRHFTGIQTSCL"
     gene            19299..19994
                     /locus_tag="JN078_001031"
     CDS             19299..19994
                     /locus_tag="JN078_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858274.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MxiN"
                     /protein_id="HAY9040309.1"
                     /translation="MKVCNMQKGTLPVSRHHAYDGVVIKRIEKELCKTIKDRDTESKK
                     KAICVIKDATKKAESLRIDAVCDGYQIGIQTAFEHIIDYICEWKLKQNENRRNIEDYI
                     TSLLSENLHDERIISTLLEQWLSSLRNTVTELKVVLPKCNLALRKKLELDLHKYRSDV
                     KIILKYSEGNNYIFCSGNQVVEFSPQDVISGVKIELAEKLTKNDKKYFKELAHKKLRQ
                     IAEDLLKENPVND"
     gene            19987..20394
                     /locus_tag="JN078_001032"
     CDS             19987..20394
                     /locus_tag="JN078_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa secretion machinery protein MxiL"
                     /protein_id="HAY9040310.1"
                     /translation="MINQINASNALQQRLNSEEFVNLNERLSSSQSFDENIIYEIMQY
                     FSQSELNSIDNDELHNKIEQLFNSRFPYLTAAQKSSLLNKLIDANQYVDLHEGFYASL
                     SIYNNIDFYIKTTTFDSLISVFEAGREADDSTW"
     gene            20378..20806
                     /gene="mxiM"
                     /locus_tag="JN078_001033"
     CDS             20378..20806
                     /gene="mxiM"
                     /locus_tag="JN078_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858276.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system pilotin MxiM"
                     /protein_id="HAY9040311.1"
                     /translation="MIRHGSNKLKIFILSILLLTLSGCALKSSSNSEKEWHIVPVSKD
                     YFSIPNDLLWSFNTTNKSINVYSKCISGKAVYSFNAGKFMGNFNVKEVDGCFMDAQKI
                     AIDKLFSMLKDGVVLKGNKINDTILIEKDGEVKLKLIRGI"
     gene            20936..21568
                     /gene="mxiE"
                     /locus_tag="JN078_001034"
     CDS             20936..21568
                     /gene="mxiE"
                     /locus_tag="JN078_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional activator MxiE"
                     /protein_id="HAY9040312.1"
                     /translation="MEGFFFVRNQNIKFSDNVNYHYRFNINSCAKFLAFWDYFSGALV
                     EHSHAEKCIHFYHENDLRDSCNTESMLDKLMLRFIFSSDQNVSNALAMIRMTESYHLV
                     LYLLRTIEKEKEVRIKSLTEHYGVSEAYFRSLCRKALGAKVKEQLNTWRLVNGLLDVF
                     LHNQTITSAAMNNGYASTSHFSNEIKTRLGFSARELSNITFLVKKINEKI"
     gene            21555..23255
                     /gene="mxiD"
                     /locus_tag="JN078_001035"
     CDS             21555..23255
                     /gene="mxiD"
                     /locus_tag="JN078_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system secretin MxiD"
                     /protein_id="HAY9040313.1"
                     /translation="MKKFNIKSLTLLIVLLPLIVNANNIDSHLLEQNDIAKYVAQSDT
                     VGSFFERFSALLNYPIVVSKQAAKKRISGEFDLSNPEEMLEKMTLLVGLIWYKDGNAL
                     YIYDSGELISKVILLENISLNYLIQYLKDANLYDHRYPIRGNISDKTFYISGPPALVE
                     LVANTATLLDKQVSSIGTDKVNFGVIKLKNTFVSDRTYNMRGEDIVIPGVATVVERLL
                     NNGKALSNRQAKNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIAYPETNSIL
                     VKGNDQQIQIIRDIITQLDVAKRHIELSLWIIDIDKSELNNLGVNWQGTASFGDSFGA
                     SFNMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVS
                     LVGERNSSLEHVTYGTLINVIPRFSSQGQIEMSLTIEDGTGNSQSNYNYNNENTSVLP
                     EVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTRNISN
                     IVRVFLIQPREIKESSYYNTAEYKSLISEREIQKTTQIIPSETTLLEDEKSLVSYLNY
                     "
     gene            23274..24341
                     /gene="mxiC"
                     /locus_tag="JN078_001036"
     CDS             23274..24341
                     /gene="mxiC"
                     /locus_tag="JN078_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system gatekeeper subunit
                     MxiC"
                     /protein_id="HAY9040314.1"
                     /translation="MLDVKNTGVFSSAFIDKLNAMTNSDDGDETADAELDSGLANSKY
                     IDSSDEMASALSSFINRRDLEKLKGTNSDSQERILDGEEDEINHKIFDLKRTLKDNLP
                     LDQDFIDRLKRYFKDPSDQVLALRELLNEKDLTAEQVESLTKIINEIISGSEKSVNAG
                     INSAIQAKLFGNKMKLEPQLLRACYRGFIMGNISTTDQYIEWLGNFGFNHRHTIVNFV
                     EQSLIVDMDSEKPSCNAYEFGFVLSKLIAIKMIRTSDVIFMKKLESSSLLKDGSLSAE
                     QLLLTLLYIFQYPSESEQILTSVIDVSRASHEDSVVYQTYLSSVNESPHDIFKSESER
                     EIAINILRELVTSAYKKELSR"
     gene            24354..26414
                     /gene="mxiA"
                     /locus_tag="JN078_001037"
                     /gene_synonym="virH"
     CDS             24354..26414
                     /gene="mxiA"
                     /locus_tag="JN078_001037"
                     /gene_synonym="virH"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system protein MxiA"
                     /protein_id="HAY9040315.1"
                     /translation="MIQSFLKQVSTKPELIILVLMVMIIAMLIIPLPTYLVDFLIGLN
                     IVLAILVFMGSFYIERILSFSTFPSVLLITTLFRLALSISTSRLILVDADAGKIITTF
                     GQFVIGDSLAVGFVIFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLK
                     AGIIDAAGAKERRSILERESQLYGSFDGAMKFIKGDAIAGIIIIFVNLIGGISVGMSQ
                     HGMSLSGALSTYTILTIGDGLVSQIPALLISISAGFIVTRVNGDSDNMGRNIMSQIFG
                     NPFVLIVTSALALAIGMLPGFPFFVFFLIAVTLTALFYYKKVVEKEKSLSESDSSGYT
                     GTFDIDNSHDSSLAMIENLDAISSETVPLILLFAENKISANDMEGLIERIRSQFFIDY
                     GVRLPTILYRTSNELKVDDIVLLINEVRADSFNIYFDKVCITDENGDIDALGIPVVST
                     SYNERVISWVDVSYTENLTNIDAKIKSAQDEFYHQLSQALLNNINEIFGIQETKNMLD
                     QFENRYPDLLKEVFRHVTIQRISEVLQRLLGENISVRNLKLIMESLALWAPREKDVIT
                     LVEHVRASLSRYICSKIAVSGEIKVVMLSGYIEDAIRKGIRQTSGGSFLNMDIEVSDE
                     VMETLAHALRELRNAKKNFVLLVSVDIRRFVKRLIDNRFKSILVISYAEIDEAYTINV
                     LKTI"
     gene            26427..26828
                     /gene="spaK"
                     /locus_tag="JN078_001038"
     CDS             26427..26828
                     /gene="spaK"
                     /locus_tag="JN078_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system chaperone SpaK"
                     /protein_id="HAY9040316.1"
                     /translation="MSNINLVQLVRDSLFTIGCPPSIITDLDSHSAITISLDSMPAIN
                     IALVNEQVMLWANFDAPSDVKLQSSAYNILNLMLMNFSYSINELVELHRSDEYLQLRV
                     VIKDDYVHDGIVFAEILHEFYQRMEILNEVL"
     gene            26832..28124
                     /locus_tag="JN078_001039"
     CDS             26832..28124
                     /locus_tag="JN078_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FliI/YscN family ATPase"
                     /protein_id="HAY9040317.1"
                     /translation="MSYIKLLTQLSFPNRISGPILETSLSDVSIGEICNIQAGIESNE
                     IIARAQVVGFHDEKTILSLIGNSRGLSRQTLIKPTAQFLHTQVGRGLLGAVVNPLGEV
                     TDKFAVTDNSEILYRPVDNAPPLYSERAAIEKPFLTGVKVIDSLLTCGEGQRMGIFAS
                     AGCGKTFLMNMLIEHSGADIYVIGLIGERGREVTETVDYLKNSEKKSRCVLVYATSDY
                     SSVDRCNAAYIATAIAEFFRTEGHKVALFIDSLTRYARALRDVALAAGESPARRGYPV
                     SVFDSLPRLLERPGKLKAGGSITAFYTVLLEDDDFADPLAEEVRSILDGHIYLSRNLA
                     QKGQFPAIDSLKSISRVFTQVVDEKHRIMATAFRELLSEIEELRTIIDFGEYKPGENA
                     SQDKIYNKISVVESFLKQDYRLGFTYEQTMELLGETIR"
     gene            28217..28555
                     /gene="spaM"
                     /locus_tag="JN078_001040"
     CDS             28217..28555
                     /gene="spaM"
                     /locus_tag="JN078_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface presentation of antigens protein SpaM"
                     /protein_id="HAY9040318.1"
                     /translation="MEALDKRIIYFLQLENDLEPVGAQSVSQLFNTRRKIAIVKKHII
                     QYQSERILLKGRIEEIQKDIDEANASKRKLLHKESKICKRIGLIKRNNFAKQLILDEL
                     SQEDMKYGIR"
     gene            28542..29420
                     /gene="spa32"
                     /locus_tag="JN078_001041"
     CDS             28542..29420
                     /gene="spa32"
                     /locus_tag="JN078_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system needle length
                     regulator Spa32"
                     /protein_id="HAY9040319.1"
                     /translation="MALDNINLNFSSDKQIEKCEKLSSIDNIDSLVLKKKRKVEIPEY
                     SLIASNYFTIDKHFEHKHDKGEIYSGIKNAFELRNERATYSDIPESMAIKENILIPDQ
                     DIKAREKINIGDMRGIFSYNKSGNADKNFERSHTSSVNPDNLLESDNRNGQIGLKNHS
                     LSIDKNIADIISLLNGSVAKSFELPVMNKNTADITPSMSLQEKSIVENDKNVFQKNSE
                     MTYHFKQWGAGHSVSISVESGSFVLKPSDQFVGNKLDLILKQDAEGNYRFDSSQHNKG
                     NKNNSTGYNEQSEEEC"
     gene            29414..30295
                     /gene="spaO"
                     /locus_tag="JN078_001042"
     CDS             29414..30295
                     /gene="spaO"
                     /locus_tag="JN078_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000944309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system protein SpaO"
                     /protein_id="HAY9040320.1"
                     /translation="MLRIKHFDANEKLQILYAKQLCERFSIQTFKNKFTGSESLVTLT
                     SVCGDWVIRIDTLSFLKKKYEVFSGFSTQESLLHLSKCVFIESSSVFSIPELSDKITF
                     RITNEIQYATTGSHLCCFSSSLGIIYFDKMPVLRNQVSLDLLHHLLEFCLGSSNVRLA
                     TLKRIRTGDIIIVQKLYNLLLCNQVIIGDYIVNDNNEAKINLSESNGESDHTEVSLAL
                     FNYDDINVKVDFILLEKKMTINELKMYVENELFKFPDDIVKHVNIKVNGSLVGHGELV
                     SIEDGYGIEISSWMVKE"
     gene            30300..30950
                     /gene="spaP"
                     /locus_tag="JN078_001043"
     CDS             30300..30950
                     /gene="spaP"
                     /locus_tag="JN078_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein SpaP"
                     /protein_id="HAY9040321.1"
                     /translation="MLSDMSLIATLSFFTLLPFLVAAGTCYIKFSIVFVMVRNALGLQ
                     QVPSNMTLNGIALIMALFVMKPIIEAGYENYLNGPQKFDTISDIVRFSDSGLIEYKQY
                     LKKHTDLELARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLP
                     FIVVDLVISSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALIEQYINVPA"
     gene            30965..31225
                     /gene="spaQ"
                     /locus_tag="JN078_001044"
     CDS             30965..31225
                     /gene="spaQ"
                     /locus_tag="JN078_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein SpaQ"
                     /protein_id="HAY9040322.1"
                     /translation="MSDIVYMGNKALYLILIFSLWPVGIATVIGLTIGLLQTVTQLQE
                     QTLPFGIKLIGVSISLLLLSGWYGEVLLSFCHEIMFLIKSGV"
     gene            31225..31995
                     /gene="spaR"
                     /locus_tag="JN078_001045"
     CDS             31225..31995
                     /gene="spaR"
                     /locus_tag="JN078_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858288.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein SpaR"
                     /protein_id="HAY9040323.1"
                     /translation="MDISSWFESIHVFLILLNGVFFRLAPLFFFLPFLNNGIISPSIR
                     IPVIFLVASGLITSGKVDIGSSVFEHVYFLMFKEIIVGLLLSFCLSLPFWIFHAVGSI
                     IDNQRGATLSSSIDPANGVDTSELAKFFNLFSAVVFLYSGGMVFILESIQLSYNICPL
                     FSQCSFRVSNILTFLTLLASQAVILASPVMIVLLLSEVLLGVLSRFAPQMNAFSVSLT
                     IKSLLAIFIIFICSSTIYFSKVQFFLGEHKFFTNLFVR"
     gene            32002..33030
                     /gene="spaS"
                     /locus_tag="JN078_001046"
     CDS             32002..33030
                     /gene="spaS"
                     /locus_tag="JN078_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     switch protein SpaS"
                     /protein_id="HAY9040324.1"
                     /translation="MANKTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISF
                     FSLSDVMLLYRYVIINDFEINEGKYFFAVVIVFFKIIGFPLFFCVLSAVLPTLVQTKF
                     VLATKAIKIDFSVLNPVKGLKKIFSIKTIKEFFKSILLLIILALTTYFFWINDRKIIF
                     SQVFSSVDGLYLIWGGLFKDIILFFLAFSIFVIILDFVIEFILYMKDMMMDKQEIKRE
                     YIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPF
                     ISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVW
                     LEQVENTH"
     gene            33043..33285
                     /locus_tag="JN078_001047"
     CDS             33043..33285
                     /locus_tag="JN078_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040325.1"
                     /translation="MCYMGVNFCNKIGIDQSEFEIESSIINSIANEVLNPISFLSNKD
                     IINVLLRKISSECDLVRKDIYRCALELVVEKTPDDL"
     gene            complement(33862..>34118)
                     /locus_tag="JN078_001048"
     CDS             complement(33862..>34118)
                     /locus_tag="JN078_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HAY9040326.1"
                     /translation="LFMALRSQRPPAGLIHHTDRGSQYCAYDYRVIQEQSGLKTSMSR
                     KGNCYDNAPMEIFWGTLKNESLSHYRFKSRDISSAYGKTD"
BASE COUNT        10619 a         5005 c         6850 g        11644 t
ORIGIN      
        1 aaccgagaga gaacgaatga atgccctgag aatggtcatt ccgccacgat atccctggtc
       61 tctgatctcg cgagcgatta ccgttgccgg gattttgtaa ggatgagcat cggcgatgcg
      121 ttgacgaata taatcccggt attcatccag gagtgaagca acagcaggtc gcggcgtata
      181 ttttggcggc tcagattttg cctgcaaata acgtttaacg gtattgcggg agagccccag
      241 ttctctggca atcgcccggc tactcattcc ctgcttgtgc aggattttaa tttccataac
      301 tgtctcaaaa gtgaccataa gctctcctga atcaggagag cagattaccc cctggatctg
      361 atttcaggcg ttgggtgtgg atcactattg caccgttcgt gacacttgtt gactgcctgt
      421 gcggcatctg gtatcaaggt ggcgtgaagc cggttcaggt tctcatgcgg aacgttggaa
      481 cctatatccc cccgatacca aaggcgaaat gtaagtgaca aaatgcaatg aacacgttct
      541 ccgttaactg aggagcatgg tgataaataa aggtaaatgc agaaggtgta gagtctcgca
      601 gatttctgac atcatagagc ctaacattag atgcataacg ctacagattg tagaatctct
      661 acaggtgaaa tatacactgg ttggcgttta tgtcgcaaaa catgtcattc aggttcatct
      721 caccaataag gatatgagtg aagtggagga taagtgagtc tgctgtcaga gttttctggt
      781 gtatgtcagt aactgcagaa ccatgtctgc ttgatatggg agcttatgga ggctctctgt
      841 acaaggttag ggagctaaca aagcagggat aaaaagtccg cctgatgcag gcacggttcg
      901 ttaaatcttt tgccattggt aacaaaatgg tgcgatgaat gttcaggcta tctttatctt
      961 gatggtggtt cagctgtttg gtaaagaaat cgctgtaaca atagaagaac tgcaggcagt
     1021 actggtccca cattgtttgc tcagtcaact ggtgaagttc cgtagcgcgt aaattaatgc
     1081 tttgcatgaa acgttactgg agtggatgaa agaatacctg catatatcat tactgcgttg
     1141 gattaccagt acaacagatt gaatgaactg gacatgttga tagacggcat tgaaaagcag
     1201 cttataagca tagtgcggca gagttaattg gagagcactt cgccttctga gtattaagta
     1261 atcatggtgg tacctgcgga tactatctat tcactgtgct cggtcggcag ccttactgac
     1321 caaggagttg ggggagttga taacaaagtt gaaaaaacag ctctcaacca aggtggttat
     1381 tgtaacaata gcaaataagc tggtgtgacc tgtatcacaa taaccgatta tggacgtaaa
     1441 tacgacaaaa atatgtcagt atcaggcggt attaattgct gatgctgatg gacattaact
     1501 cttaataaaa gggtggatgc tgaaaggttg ttatggtgac ggacgtgatg acgacggaaa
     1561 agagtatgag gttttggatt taaagttcgt tcggggaata aggacccggt cagctaattc
     1621 tcatagtagt tcgcattgct ggatgcaata ctgtgctgca attactcgtc gatgtcggaa
     1681 caacggaagc cttgcaaacg gggatgtatt catacaggtg ttatgttata tggggtttta
     1741 ttgcaggggg ctataccaag agaatatatg atatctcatc agactgatgt gagggtaaat
     1801 gagaatagag taaacgaaca aggttgtttt ttggcgagga agcagatgta tgacaattct
     1861 tgtggagctg ccagtttact ctgtgctgca aaggaattag gggttgataa aataccacaa
     1921 tacaaagggt ctatgtccga aatgacaagg aagagttctc ttgatttgga taatcgttgt
     1981 gagcgggatt tatacttaat aactagtggt aattataatc cgagaataca caaagataat
     2041 atcgcggatg ccggttattc tatgcctgat aagatagtca tggctacgag gcttcttgga
     2101 ttgaatgctt atgtcgttga agaaagtaac attttttcgc aagtaattag ttttatttat
     2161 cccgatgcaa gggacttatt aattggcatg ggatgtaata tagtacatca acgagatgtg
     2221 ttatcttcta accaaagagt tttggaagct gttgctgtat cctttattgg agttcctgtc
     2281 ggcctccact gggtgttgtg tagacctgat ggaagctata tggatccagc tgtaggagaa
     2341 aattattctt gtttttcaac tatggaatta ggtgcaagaa gaagtaattc taactttata
     2401 ggatatacta aaataggtat ttccatagtt ataactaatg aggctttgta aattgtcgtt
     2461 ttttatctgt gaaggagctt gaatattttg gggcgggggg cataacaaat gatattactg
     2521 agtacaaatt tagctatatt gggcggatta gttgtgtggg aagacgaaat gtttctcttg
     2581 aaataagtga actccctcaa ggaatgattg tgtgcttaaa tatttaagtg ctggtaagtt
     2641 tgagaaggct gacatatttt gcagagcaaa cagtgattga cttggatgat atttttattt
     2701 tagtcactcg ttgtaattgg agtatgcttt attttatttg aaaatagatg tattttatac
     2761 ccgcaattta aattgtaagc cctatgaggg gtatggatat tataagttac tctttgacta
     2821 agcataactt ttggggttag aaaaataaat ctcttgttaa taattaatat gattttaaaa
     2881 tcaaacttgt ttataattat aaaataatgt aagtcggtca ttttatggga agattaggag
     2941 aataaaacag taattatatt tgagaaatct gctaatatat tcttaaagct tttttgatac
     3001 tgtgaacgaa gtctgttaat ggtggatttt ttgtttatca ccatgtaaaa aaattgagta
     3061 gtaaaagcgt tgactgctaa tcctcgctgt ttttattgaa acgattaaaa atacgctgaa
     3121 tattttcggc cagtcactca tcttcacata aaattttgac catcatgccg catcccttag
     3181 ttgcacaatt cattttcaat gatatgaata ttactaattt caccagataa tgttctcgtg
     3241 gtcagcaggg tatgagtttt caccgtaatt ttaaggaaac acagtgcgtg gggattgaat
     3301 aacagatagc cgacggaatt accccaccgg ctgaaagtca agttcaacga agatttttat
     3361 tatctgaatt gggcagttta catcagtgtt cgagtttatg aagacgatag atggcgagaa
     3421 attatatctc gaatagcttc atctatttct ctctgaactg ttttgtttat tttagataat
     3481 gtaaatatta gagttctgtt tgttttattc tcttttcttt ttatgtaagt ccgtttgtct
     3541 ttagaaataa ataacgagtc aacttttagc gaagggtttt gctttctgtt tttgcttttc
     3601 tttatgatgt ttaaaatttc ttttttatat atgtccgggg gcaaatttgt atcaaggtct
     3661 tttatttctt cctttaatat tggtagtgta gaactaagag attcattagc cttttcaagt
     3721 cctttataat aattgaataa tatcttgtag tcattaaagt taagttctga cgcgattgga
     3781 aatagagata ttatttcctg tggaacgctt gctgcctgaa aggcacgagt gactttcgcg
     3841 cgagacagat tctctttttt ggctatgtct ttataggaca tccctgatac tttcagaaaa
     3901 ttaagaccaa taccaagttc tcggatgcta tgctcttttg ctgtttgtat atcgtttgct
     3961 agttttctgg catcaagagt agatatatat tcttttgaat atagaacttc aagatctgct
     4021 cctgcatata ttgcagatgc tcttctacga gtgccatcca gaatttcaat tctaccatca
     4081 atctcccttc ctattacagg gaagaattgt tgtagcttta tagtttttat gatatcggct
     4141 aatgattctt ctgttaggga ttcttgatcg cgtacattcg ttttttggtt gacgaaggtt
     4201 aaatcttgga tccttttatg aggaatcttg gctttgataa aggaaacttt attaccagaa
     4261 tggagtgtaa actctttctt ttggccttcc tttatactta acaagtcgtt gcacaaatcc
     4321 accatatcac accctgttta ttcatattga tttatattga caaaagttaa atgcagtgtg
     4381 agcaagattg tatgtaactg ttgatgatag tcaacggtag tcttaaaaat tactatttta
     4441 atagctggat tgatgcaatt tatctttatt ggataaaaga ataatattct tgtggagctc
     4501 tgatgtgaga gctccataga tgaaaaaatg cttatcaatt actatattga ttttgtacta
     4561 tttttgacta cagaaataag atctccaata gtaataatgt gttctaatgc agattcatct
     4621 atacgtagat tgaactcaaa actaatcata tccagcattt caatcagaga aagagaatcg
     4681 gcagaaagat cttcaataaa tttagtttct tcagatagtt tgctgtacgc tataccatag
     4741 caaaaggcca ctattgataa tattttttct tttatcatat tttaatcctt attgatattc
     4801 tttaatactt ttgataggga agtggttaca tcttttgctg ctttatatat attattgttt
     4861 tcagctgtaa tatcattgtt attttttaaa tcagatatat catctgtaag taattctgca
     4921 gaggtatcgt caatttttga caataccttg ctgagggcgc tagatacttc ttttgccttt
     4981 tcatagatcg catgattttt atcaattgta tctgcgttgg tttctgttac gtagtttatt
     5041 gtatttgcat ctgtaacttt taatttgttg tttattctgt gttctgttgt ggattttgta
     5101 atgtcctttg atttttcctg taactctcgt tcttgtgttc ctgatttagt tccaatgaga
     5161 gatataagat tacttaggga gtttgttact ttttttgaag cttcaaatat cgtttcccgt
     5221 gttaaatatg tgtctccatt tcttgataaa aaatcagtct gaagtacttt tgaatcagtg
     5281 tttgagttga atttattgat ttgcgaagct actctatgag aaagagaagc gctactttta
     5341 gttgtatctg atgagttatc attactgctt gtcactcctt ccgggtggag agggggggtg
     5401 gttgaagagt tctgtatgtt cagaggcctg tgtccccgag aaagagagtt atttgtagat
     5461 ctttcttgac tactcgtagt taacaggtct gaacctattc catccgaatt atctggagta
     5521 tggttgaaaa ccttttctaa agctgaatta tttgcaaatg tctggacagt atctgatata
     5581 gagtgtggta gaacggaagt tactttttga actagtgctc tttgtggatt tagtaatgag
     5641 tttccgttac gggataatag atcgtttgtc tgagaagtag gagactgtgc atcattttct
     5701 gggttctcgt gatagctatt gtcatatact ctgttgtcaa aaactctatt atcgtaagtt
     5761 ctattatcat tatttatatg atagtgaatt acaggttggg atgttttctc attggctccg
     5821 ggggttggtc cgccatctgg catatcttcg ggaggtgtag ggaggccatc ttggatagga
     5881 tgcgaatctt ttatatcttc taaaatatca ttaaggactt ttctcaacag ctcaggaaac
     5941 acggctactg tatttaagtc tcttgacagt ttacctatac caaatccttt actatcaata
     6001 gtatttttac gttgattgcg caaactatca aaggcaagtt ttgcctgtgc gtcaactaaa
     6061 tcatctagtt tgagagatga aacagtttca ttacttaact ttaattcagc aagaatatta
     6121 ttcttgataa atgatgatac ttcagtattg aggagttttt gtcccaatga taaagcttca
     6181 ccagatgtgt gttgttgtgc taatagtgca agtctgtgct caatgttttg tcgtaattga
     6241 tggagtttct tattctttgc cgaccatggt ccaaaggcag aatcttggga taatttatct
     6301 tttataatta gttccgaata ctgtgcgaca attttttgaa gtcccttttc gttttcaaaa
     6361 ttaagatcat tttgatgtac taaggagtac aaaacatttg aaaattcgag aatctcgctt
     6421 ttggcatacg cattcattga gttggaataa atgcttctta acacatcttc tttccctgag
     6481 gaagaaaata aaaaatcaag acatttctga ttaaaagacg ttgcaaagtt ttctttttca
     6541 gacactgatg ctggtgtttt tagagaagtt tgcgaactat ggatatcgga tattttgctt
     6601 tttaactcgc tgtattctgt tgatgatggt gaagttgcct tatataagaa tgttggcgct
     6661 tgagtattat ttacattatg catggcgcac ctcagaaatg gagaaaaagt ttatctgtat
     6721 ctgtacatga gcttattgta ctactcaaaa cctttactaa attatcaaaa atactattgg
     6781 cattactgta tttttgaact aaagtttgaa gattattttt cattgtttca tcttcggcag
     6841 agaatccggc attccatgcc tgatattttg cattatctag cacaacctcg ccatttccac
     6901 ctagattatc taagcttttt aacatattgt ctattggggt catgtttata ttgacaacat
     6961 atcccccgtt tttttcagat accttgccga ttgttccacc taattctgta agccatttat
     7021 ttgcttgttc cttactaaca gtattatttg ctggatatag cggtttatct ttatattttt
     7081 ccttgagctt tgtcaattcg tctttaagcg atttgacttg taatttcacg gagtttccgt
     7141 cgttacctcc gggagagatc cagccggcaa gactggaaag aacagcgcta aaatcttgat
     7201 acatttgagt atatgaacta acggcatgtt catatacttt cagatactgt tcattaatat
     7261 tattgattga ctttgcaatt ttatcccaca gttctctgtg agatatcatt tcatatccat
     7321 caagctcggc ttctttcggg gctgaatgta ataattctct tgcgtcttta ttaattggat
     7381 attctttctt ggaaagaata tccaatagtt gagcggattt gtttacatcc atgctaatct
     7441 gagatgaatg taatgctatt tcttctagcg atgttttagt caacgttttt tgtgagagat
     7501 ctttctttaa tgcctgattt gttgttctga tattatgaag ggtgtcgttg agcatagtaa
     7561 gggaacttac aggatgagaa ctggtcgttg tttttatatc agaattaact gtttcggttg
     7621 atgaaccgtt ggtattgttt gggctgaatg atgaggtgga aatactatta gtcagagttg
     7681 ttatattcat ggttatttcc ttataggaag agccatatat tattatggct cttggatata
     7741 ttaagctcga atgttaccag caatctgact ggctgtagaa ttccttgatt ggttgatgtt
     7801 gtcaattata ttcaataatt tttgtattaa ttgatttgtc gcttgggatg cttctttaga
     7861 tacttgggat gcttcctctg cttgtttact gctggcctga ctgattagtt gttcttcttc
     7921 ttcaagagca gatgtataac gccctcctga tgtggatata ttaccagcaa cggctgatgt
     7981 ctccattgtt gcacggccaa tgttttgttt ttgctgagca gaaagggtat tgagctcgta
     8041 agctcttctc tgggtgtcaa ttttatcctg caaagaaata tcgggagaac taagagaagt
     8101 tttatgttca gttgacaggg atatattatc tggtgccagt ttatttttac ctaaaatttt
     8161 tgtgctagag ttagtttgtg gtgaggtgat atttgtatct atttgtttat ttaaccctaa
     8221 tttagaacct gcaagctctt tttcaagaga ttgagcagtg gcaaggttct ttcttaaggc
     8281 tcctttttgt tcgctaatcc ctgaatgcgt ttttttggca ccgatacccg ttatacctac
     8341 ttgtgtgacc gctccagtaa tgcttgatga tagggctgct aggccttgcc gaacaatgtt
     8401 ctctgcagct gattttgtag catcgaacgc aatcaatgac aattgagagc ccaatctagt
     8461 ttctgcagtg cggagagcag aaagtagaac ggctacacta ataattaaag aaacagcatt
     8521 agaagaaaga ctggaaatat ccagggtgtt ctctggggta attgtgtgac tcatttctga
     8581 aagatctttc atctttttgt cagtaaggcg agcaatgatt tctgaatcat gctgaacctg
     8641 ctctgataac tttaaaagtt gatcatcatt taatgtagtt gttaatacgg gatttttacc
     8701 gacattaagt ggaatatgtg ctgctaactg ctgataattt tgtgattttt gtgtttcgga
     8761 agaactttga gtttgttttg tagatatatc tgtatataaa atcggggctg attttgtgtt
     8821 ttgaatttcc ataacattct ccttatttgt atcaagcagt agtttgttgc aaaattgctt
     8881 ttgcaacatc agttctatta gcctgagagt tggacattga ggctaacagc tctgcaatta
     8941 cttcctgcaa ttggccgaat ttttctattg cgtcaccgat gtattttgac agttgttcaa
     9001 cttgatattt cgataatgtc aggtctgcta gatttttcga cgcgttgttt tggaaaacag
     9061 cagaagcgac atttcctccc gcttgtgtgg cagagttaac actttctcct aataaaactg
     9121 cttggtttaa atgggtggaa ataatttgtt tggatattac ttcatcaccc gctgcaccaa
     9181 gaaatttatt taatctggca acagcattag tgattaaatc gtccagttga gaagaaaaat
     9241 tcttgagaaa ctttggtata aggtctgtga gggttttacc tattattttg ccaatattct
     9301 ctgcaagttt tgctgctgcc tgtttaccaa cagtggctac gagaacgact gctgcaacca
     9361 agacaagagc gcctgcgatt gcccccagaa tagagccaat cattttggct tttttcgagt
     9421 cgacgcccaa gccttcgagc atttttgtaa atgcatctga aaggagtttg attaagggtt
     9481 caatgactgc tttcatgatc ggattcaggg cttgttccat gaaggaattg ccggtcgctg
     9541 cttgtactat agcatccgta accataagag ctaaaccaac agctgccagt gctagagatg
     9601 ctcctccaga aaaagctgct gcaacaacac taacgatagt taaaagtgcc ccaagtattt
     9661 tcccaacaca acccattact ctgttgagtt cttctgcttt acgtacttca gcagcatact
     9721 catcagattt tctctccatt tcagtttttc ttgattcttg gagagactgg aatagagcca
     9781 gatcattttt taaagattct tcattatttt ttccaactag ttgaataaag gttgccatca
     9841 attgagtaac actggcaagt ccggttaatg atttctgctg ggttgatagc tgttcagcag
     9901 atgctgtgtt tgaaaatgca gaaaaagagt ctatttcttt ttcgagttgc attgatttat
     9961 ctgtaagttt gctatgaatt gacagagttt tctgctcaat caatgtcctg tctttaactg
    10021 ctgcgtcttt tttgatagtg agttgtattt cttcccgtct taatttttta ttttctggtg
    10081 aatctggggc gagttcggat aatcttgttt gaatttggtt aattttattt tctaggtctt
    10141 ttattttaga atctgcgttt tttagtttat taatttgttt ttcatagtct ctggttagtc
    10201 cttcagtttc agatagaaga gtattaattt tatcggagaa ttctaggttt ttttgctgtc
    10261 ttgcctgttg ttgggacttc caggcagtaa ttttatttgt taatgcagtt aaagattttt
    10321 caccaagtat ttgaataagg tttccaatta aaagcgttag ttgggaactt gcatttaatg
    10381 actttggtgc tttaagttca gggattaata tattcgaagt tgagtgtgca ttagttgtat
    10441 taatattttt gttagcagca agatcagcaa ttgtaagaga aaataatttg ttagctgcat
    10501 catttgcagc ctggatagta ttgtctccaa gctcagtgga agccaatatt ttggcaagag
    10561 gcaaaccagt ggttgtggtg cttacattat gcataataat tactccttga tatcctgaat
    10621 tgcgtctaag tatgattgtg cttttatttt taatttttca tcattgctgt gttgaattac
    10681 gagttcgaag cactctttgg ctttcaaggg ggctttcaac cgaagctggc attgtccagt
    10741 atggaatacc ggtgtatagt cattttttcc taatgcaaaa gcgacagcat aaaggtctgc
    10801 tgcttgttgg aactgttctt ttatctgata aatagctgcg agtcccataa tgtagtctac
    10861 attgtaaaag tcgtatatac ataaaaatct gaagaaaact tcagcttcct ctattcttcc
    10921 tttgttgtaa aagtcataag catatgaata aatgtcatcc atcatatcat caggaattgc
    10981 attaatatct ttcagtgtag cgccagagtt aattgcatca attactgcag tagagatgct
    11041 ttcattttca gtgatattta aagacataag gtctcctttt tgtctgcatt actttaataa
    11101 gtataagatt taatataaac agatttaatt tgtattgctt tgacggtata cagcctttag
    11161 aacctctgcg cttatttcta tttgtaaaac ttttgttgat tcattaaata ttttatcgta
    11221 gacggaactg gatactagat ttgtaagatc cttcatttgt gtgttaaaca aatccatgtc
    11281 actgctataa cgttttaaaa tctttgctct gaggccagat gaggcaatct cgtttagtgc
    11341 tgtatgactg atagatgttt gtgctgattt ttcatcaagt tttatatccg ggaatttttt
    11401 ttcaatagct gcaaatatgt tttttttgtt atctgaggtc aaaacaactc cattgtgtat
    11461 ggccatttca tctatacttc tgtttatcat tgaagagaca taagaggttc gctcttggct
    11521 catccaacaa aatagttgat tccccgaatt actatctttt attttgtcta tgacgctgtc
    11581 cctgatttta tttatattca ccgggcatcc aaaattcttc tgaggaaagc gttgttttaa
    11641 gttaaaaaca gataatattt tctttacaag cttattgtga cttaacgaat caaatgatgg
    11701 gcgaggaatc gcgaattcaa cctgtggaag tattttgttt agaatttgca tgataccccc
    11761 tatatgttag ttcacttctg aagtgatgtt tgcaatggtt agtttaatac aaaataaaaa
    11821 ttcgtacaaa gattcaatga gttcatcagg tgaaagatat tttttgtagt gtttcttggt
    11881 caaaacacat tgatgagtat cagggagaag acagatagaa gaaccataat ctctactcaa
    11941 agagtagtta aggatgagta tgtgttctgg attaataata ttttctgtaa aaagttcatg
    12001 ttcattaaga agtccggtca aaaagatgta ttcatcatta tctgttatac aaacaggtat
    12061 ttgttcttcg agcaatataa aggcttgatt tttatcgtta aaatcaagct ttgcacctgt
    12121 tatttcataa agtttatcat atagtttgcg acacatttct atggccttct atatattaga
    12181 atgagagtta ttcaataaaa gcttattgac ctgtaataag tcgtgaatgt aaagtttggt
    12241 tccaagatct ggcgatttaa gagaattgta ataatcaata gtttttattg acttttcgat
    12301 aattacttct tttttatctg ttgctccggt ttttaattcg tttaatacac gagacatatt
    12361 gctgggtgct gattttacta agtatgagtg gcaagcgttg atgaccgcat caaagtcttc
    12421 tgaagataca ttttcagtag gatgtttgta aagtgaaatt gataaaggct tgaatgtttt
    12481 tggggtgtgg ataaggttaa ttttattgaa acttttaaga tagctacgtc gtaattgagt
    12541 caatctggaa agatcaaaat cagattcaat atacttcatt atctcgttat aagactgatt
    12601 gagactttca atgcgttgcc taactttatt tgcatacgcg tatacattgt taggtgtagc
    12661 aaccaattta acgtcaggga gtggaaagta tatttcagaa tttcctgctt taagaacatt
    12721 aagtgccata ccagcacagt tttcagattt actgattaat ttataatttg ccaattgtct
    12781 gaaagcatct gctttctttt ggcatataaa ttttgacatg tttgtttcat caaggccaaa
    12841 aaggttatag ctgattttac catcctttgt tttattatca cctgataatg gaatgtatac
    12901 tttatcagca ctgacccccc aataaccata gggatctttt ttttgattag ctctgggaaa
    12961 aaatattttt ttgttgttat tttgatcttg ttttgaattt aataagtttc taacctcttg
    13021 gcctgcatca agtctttcgg ctgtttggtc tgaaatcata tttagtttgt cttgtttata
    13081 ggtatcgaca ctgtaacctg agcgtttttc aaaaaggtag tttatttctg tatcttttgt
    13141 aacattcccg ccgggatacc agctgagata ggtatgagtt ggttcctgta gtaaattgtt
    13201 ttttatactg atactggtat gccctaaatg ggttatgcct ctatttcccc agcaacgaaa
    13261 cactaaatgt ctttcaagat ttttggctgt accgatgcca tgaaaactct ctgcggtatt
    13321 caacattaat ttgatgtctt tacctgtaaa agaatgttga attgaatttt tgactgcttc
    13381 ataggcggca aacgcacttt ctgcagattt ttcgctagct aatgtcttga ggaaaagcaa
    13441 taaggatttt tgattcgcta gtcgataatt ttttagttgt tcatttaata tctgtgaatt
    13501 tatctttgca ttaatagtgc ttaatgttct gaaaaagaga tcctttaggt tgaatttctg
    13561 tgctaccaat ataggtccat gctctgtatc ttcaacgcgt ataggccctt ttgtattgct
    13621 tgcgtcaatg aaattgctaa ttttgagaat catactttat taactctcca ttacgtggtg
    13681 attgtgggga tgtaaaatgt atttgatata taatatattc aattaataaa tttagaaact
    13741 tgagcctgtt aacataatca aattttcttt tgctgtacat aatatgtacc tcgtgagcat
    13801 atgtagtgct ggtttcatca tgaaatccca caagttaaag tgtctgatat atcaggctcg
    13861 gagtgttata gaaaaagaga gaaccctgtt gaataagtat cttttttgtt gtaaaacgag
    13921 gtacaaaact gcaatcaatg ccccatttat gactgaggat aattaaatgc acataactaa
    13981 tttgggattg catcaggttt catttcaaag cggagattcc tataaaggcg cagaagaaac
    14041 cggaaaccaa aaaggtgtaa gcgtgatttc atatcaaaga gttaaaaatg gagagagaaa
    14101 taagggggtc gaagcgctta atcgattata tttacagaac caaacaagct taacagggaa
    14161 aggccttttg tttgcgcgtg acagagctgc agttttttac gaggcaataa agttggcagg
    14221 tggtgatacg tcaaaaatta aagccatgat ggaacaatta gatacctata aacttggtga
    14281 agttgataaa agaaatatta atgagcttaa taaagtaata agtgaagaga taagagcaca
    14341 gctaggcatt aaaaataaaa aggaattgca atcggaaata aaacaaatat ttactaatta
    14401 tttaaataat aagaattggg aaccgatcaa caaaaatatt aattataatg ggaaaaatta
    14461 tggttttcaa ttaacacccg cctctcatat gaagataggg aataaaaata tatttgtcaa
    14521 agagtataat ggaaaaggaa tttgttgtgc ttctacgaga gagagtaagc atattgcgaa
    14581 tatgtggctt tcaaaagtgg tggatgacga ggggaaggaa attttttcgg gtatcagaca
    14641 tggagttata tcagcctatg gattgaaaaa aaactcatct gaaagagctg ttgcagctcg
    14701 taataaagct gaggagttag caagcgcagc attatatagc agacaagaat tattatcaca
    14761 ggctttgtct ggtaaaacag tagatttaaa gattgtttcg acttctcttc tgacgccgac
    14821 cagtttaact gggggagagg agagtatgtt aaaagatcag gtaaaggcat taaaagagtt
    14881 aaactctaaa aggggggaac caacgaaatt attaattcgg aatagtgatg gtcttctgca
    14941 agaagtaaag gttaatctaa aagtggtgac atttaacttt ggtgtaaatg aattagcgct
    15001 aaaaatgggc ttaggctgga ggaatgttga caagcttaat ggtgaatcaa tatgttcttt
    15061 gttgggggat aatttcctca aaaatggtgt gattggaggt tgggctgcag aagctataga
    15121 aaaaaatcca ccatgtaaga atgatgtgat atatctggct aaccagataa aagagattct
    15181 aaacaagaag ttacaaaaga atgataatgg agagccgtat aaattgtcac aaagaatggc
    15241 tctattggct tatactatag gtgctgtacc ttgctggaat tgtaagagtg ggaaggacag
    15301 aacaggtatg caggatgctg aaattaaaag agaaataata agaaaacatg aaacagggca
    15361 gttttctcaa ttaaatagta aattatcctc agaagagaaa agattatttt ctactattct
    15421 aatgaatagt ggtaatatgg aaatccaaga gatgaatact ggtgtgcctg gaaataaagt
    15481 tatgaaaaaa ttaccgctat cttcgttaga gctgtcttat gctgaaagaa taggggaccc
    15541 caaaatatgg aatatggtga aagggtattc gtcatttgta taagaggaat atatggaaga
    15601 tttagcagat gttatttgcc gagccttggg tatcccttca attgataccg atgatcaagc
    15661 aatcatgctt gatgatgatg tgttaatata tattgaaaaa gaaggagatt caataaattt
    15721 attatgccct ttttgtgcat tgcctgaaaa tataaatgat cttatatatg cgttgagcct
    15781 aaattactca gaaaagatat gtttagctac tgatgatgaa ggtggaagtc taattgcgcg
    15841 attagatctt accgggataa atgaattcga ggatatatat gttaatacag aatattatat
    15901 ttcgcgtgtg cgttggctga aggatgaatt tgcgcgaaga atgaaggggt attaatgtcc
    15961 cgtttcgtat ttatttttct gtgttttatc ccatatttag ggagagctga ttgttgggat
    16021 aaggctggtg aaaggtacaa cattccatcg agtttgttaa aagcgattgc ggaaaaagaa
    16081 tccggattta ataaatttgc agtcaatgtt aataacaatg gaagtaaaga ttatggtata
    16141 atgcaaataa atgactttca ttctaaaaga cttagagaaa tgggatatac tgaggaaatg
    16201 ctaattagtc atccatgtct ttctgtacat tatgcagcaa agttattaaa tgagtttatg
    16261 ctgatgtatg gaagagggtg ggaggctgtt ggtgcctata atgcaggaac atctccgaaa
    16321 aagaaaaaag aaagattaaa gtacgcagag gatatctata aacgctattt gcggatagca
    16381 gcagagagca agcagaataa tcgaaggata taagaggatt tatgtctgag gcaaagaact
    16441 caaatcttgc accattcagg ttattagtga aactcacaaa cggtgtcggg gatgagtttc
    16501 cgttatatta tgggaataac ttaattgttc tcggacggac gatagaaaca cttgagtttg
    16561 gaaacgataa tttcccagaa aatattattc cagtaacaga tagtaaatcg gatggtataa
    16621 tttatttggc cataagtaaa gataatatct gtcaatttag tgatgaaaaa ggtgaacaaa
    16681 ttgatatcaa ttcacaattt aactcatttg aatatgacgg agtttctttt caacttaaaa
    16741 atatgatgga ggataaatcg agagttcata tactaaacgg aatgtataat aaaccctcgg
    16801 tgtttttttt ctttgctgtt attgttgtgt taattataat tttttccctc tctttaaaga
    16861 aagatgaagt aaaagaaatt gctgaaatta tagatgataa gagatatgga atagtcaaca
    16921 caggacagtg caattatatt cttgccgaaa cacaaaatga tgcggtatgg gcatctgtag
    16981 ccttaaataa aagcggattt accaaatgca gatatattct ggtgtccaac aaagaaataa
    17041 atagaattca acaatatatc aatcaacgat tcccatatat caatttgtat gtgttgaatt
    17101 tagtgagtga taaagcggaa ttactggtat ttttaagtaa agaaagaaat agttcaaaag
    17161 ataccgaact tgagaaattg aaaaatgctc tgatagttga atttccgtat atcaaaaata
    17221 ttaaattcaa ctatcttagc gatcataatg caagggagga tgctaaaggt attttcacaa
    17281 aggtaaatgt ccagtataaa gagatttgtg aaactaataa agttacatat tctgtcagag
    17341 aagaactgac agatgaaaag cttgagctca ttaatagact gatttctgat cataaaaatg
    17401 tatatggaga tcagtatatt gagttttctg tacttttgat agatgatgat tttaaaggta
    17461 aatcatatct taacagcaaa gacagttatg taatgttgaa tgataaacac tggttttttt
    17521 tagataaaaa taagtgagga taaaatgagt gttacagtac cggataaaga ttggactctg
    17581 agttcattat ctgaaacttt tgatgatgga actcaaacat tacaagggca actaacatcg
    17641 gcactaaatg cattagctga aaatccttcg aatccacagt tgctggctga ataccaaagt
    17701 aaattatctg aatatacatt atataggaac gcgcaatcta atactgtgaa agtgattaag
    17761 gatgttgatg ctgcaattat tcaaaacttc agataatagg gagcattcat gaattacatt
    17821 tatccagtca atcaggttga tattatcaaa gccagtgatt ttcaatctca agagatatca
    17881 agcctggaag acgtcgtgtc ggctaaatat agtgatatta agatggatac agatattcaa
    17941 gtatcacaaa taatggagat ggtaagccat ccagaatcat taaacccaga atctttggcc
    18001 aagttacaga cgacgctctc aaattattca ataggagtat cattagctgg cacgttagca
    18061 agaaaaacag tttcggctgt tgaaacttta ttaaagtctt aatttatatg attaggtata
    18121 aatgttttat tttattcttg ttgctgatgt tgattggatg tgagcaacgt gaagagttaa
    18181 tttctaattt atctcaaaga caggcaaatg aaataatatc tgtgctagaa cgccataata
    18241 ttactgctag aaaagttgat ggaggtaaac aggggatctc ggtacaagtc gaaaagggga
    18301 catttgcatc ggcagttgat ttgatgcgca tgtacgattt gccaaatccg gagagagttg
    18361 atatctcaca aatgtttcct acagattcat tagtgtcttc tccaagagct gaaaaggccc
    18421 gtttatatag tgctattgag caacggctgg aacagtcttt agtttctatt ggtggtgtta
    18481 tttcggcaaa aatacatgtt agctatgatc ttgaagaaaa aaatatatct tcaaaaccga
    18541 tgcatatatc agtaatcgct atatatgact caccgaaaga gtctgaacta ttagttagta
    18601 atattaagcg atttttgaaa aacacctttt ctgatgttaa gtatgaaaat atatctgtca
    18661 tattaactcc gaaagaagaa tatgtttata caaatgtaca acctgttaag gaaattaaat
    18721 cggaattttt aacaaatgaa gtaatatatg tatttctcgg gatggctgta ctagttgtca
    18781 ttcttttggt atgggcattc aaaacagggg ggttcaagag aaacaaaata tgataagaat
    18841 ggatggaatt tataaaaaat atctttcaat aatttttgat ccagcgttct atataaatag
    18901 aaatcggttg aatttgcctt ctgaactgtt agaaaatggc gtaatcagaa gtgagattaa
    18961 taatctcata attaacaaat atgatctaaa ttgcgatatt gaacctttaa gcggggtaac
    19021 cgctatgttt gttgccaact ggaatttact tccagctgtt gcttatttta tcggtagtca
    19081 agagtctcgg ttaattaatc atagtgagat ggttattagt tattatgggg gcaaaatcag
    19141 taagcaaggg gaggccgcta ttcgaagtgg tttttggcat cttattgagt ggaaggaaaa
    19201 tatatctgtt ggtatatatg aaagaataaa cttattattt aatccaattg ctttggaggg
    19261 aaattatacg cctgtagaaa gaaatttgtc ccgattaaat gaaggtatgc aatatgcaaa
    19321 aaggcacttt accggtatcc agacatcatg cctatgatgg tgttgttata aagagaattg
    19381 aaaaggaatt atgtaaaacc ataaaagata gagacactga gagtaagaag aaagcaattt
    19441 gtgttataaa ggatgctacg aaaaaagctg aatcactgcg tatagatgct gtatgcgatg
    19501 gttatcaaat tggtatacag actgcttttg agcatattat tgactatatt tgtgaatgga
    19561 agttaaagca aaatgaaaac agaagaaata ttgaggacta tataactagt ttgctttcag
    19621 aaaatttaca tgatgagagg atcattagca ctttattgga gcagtggctt agttcgttgc
    19681 gtaatacagt aacagaatta aaagtggttt tgcccaagtg taatttagca ctgaggaaaa
    19741 agttagaact tgatctccat aaatatcgct cagatgtcaa gattatttta aaatattctg
    19801 aagggaataa ttatatattc tgtagtggta atcaagtagt ggagtttagt cctcaggatg
    19861 taatatcagg tgttaaaata gaacttgcgg aaaaattaac aaaaaatgat aaaaaatatt
    19921 tcaaagagtt agcacataag aaactgagac aaattgcaga agacttgtta aaagagaatc
    19981 ctgttaatga ttaatcaaat aaatgcaagc aatgctctgc agcaaagatt aaatagtgaa
    20041 gaatttgtta atttaaatga gagattatca tcttcgcaat catttgatga gaatataatc
    20101 tatgaaataa tgcaatattt ctcacagagt gaattaaatt ccatagataa tgatgaactg
    20161 cacaataaga ttgaacaatt attcaattca cgttttcctt atcttacagc tgcacaaaaa
    20221 agttcacttc ttaataaact catagatgca aatcaatatg tcgatttgca tgagggattt
    20281 tatgcatcat tgtccatata taacaatatt gatttctata ttaagactac aaccttcgat
    20341 tcattaatta gtgtctttga agcagggaga gaggcagatg attcgacatg gtagtaataa
    20401 gttgaaaata tttattttaa gtatattgct attaacactg agtgggtgtg ctttaaagtc
    20461 atcatctaat tctgaaaaag aatggcatat tgttcctgta agtaaggatt atttttctat
    20521 tccaaatgat ttattatggt cgtttaatac aaccaataaa agtataaatg tttactctaa
    20581 atgtattagt ggtaaggcgg tttatagttt taatgcaggt aaattcatgg gcaactttaa
    20641 tgttaaggaa gtagatgggt gcttcatgga tgcacaaaag atagctatag ataaactatt
    20701 ttctatgctg aaagacgggg ttgttttaaa aggtaataag ataaatgata ccatccttat
    20761 agagaaggat ggggaagtta aattaaaatt aattcgaggg atataattgt attgtgagta
    20821 aatataaagg tctaaataca agtaatatgt tttacattta ctctagtgga cataaaccag
    20881 ttaacgttga gcttgtaaaa gataaagaac gtaacataat tgagctggct ccagcatgga
    20941 agggtttttt tttgtccgaa atcaaaatat aaaattcagt gataatgtga actatcatta
    21001 tcgctttaac attaatagtt gtgcaaaatt tcttgctttt tgggactatt tcagtggtgc
    21061 tctagtagag catagccatg ctgaaaaatg tattcatttc tatcatgaga atgatcttcg
    21121 ggatagttgt aataccgaat cgatgcttga taagttaatg ttaagattca tcttttcatc
    21181 tgaccagaat gtaagtaatg cactggctat gatacgaatg actgagtcat atcatttggt
    21241 tctttatctt ctgagaacta ttgagaaaga aaaggaggta agaataaaga gtctgacaga
    21301 gcattatggt gtgtcggagg cttattttag atctttatgt agaaaagctt taggggcaaa
    21361 agtcaaagaa caactgaaca cttggcggtt agtaaatggt ttattagatg tatttttgca
    21421 caatcaaaca atcacttctg ctgccatgaa taatgggtat gcatcaacat cccatttttc
    21481 aaatgagata aaaacacgac taggcttttc tgcaagagaa ttatcgaata ttactttttt
    21541 agtgaaaaaa ataaatgaaa aaatttaata ttaaatcttt gactctcttg attgtattgt
    21601 taccattgat agttaatgct aataatattg actctcattt attagaacaa aatgacatag
    21661 cgaaatatgt tgctcaaagt gatacggtag gatctttttt tgaacgtttt tctgcgttat
    21721 taaattatcc tattgttgtt agcaaacaag ctgcaaaaaa gagaatatct ggggagtttg
    21781 atttatctaa tccagaagaa atgcttgaaa aaatgacatt acttgtggga ctcatatggt
    21841 ataaagatgg aaatgcatta tacatatatg actctggaga attaataagc aaagttattt
    21901 tgctggagaa tatatcactt aattatctta ttcagtatct gaaggatgct aacctttatg
    21961 atcacagata tcctataaga ggaaacatta gtgataaaac attctatata tctggtcctc
    22021 cggcattggt tgaactggta gctaatacag caactttgct tgataagcag gtttcttcta
    22081 ttgggacaga taaagttaat tttggggtta taaaattaaa aaatacattt gttagtgaca
    22141 gaacttataa tatgagaggg gaggatattg tcatcccagg ggtggctact gttgtagaac
    22201 gtttattaaa taatggtaag gctctgagta acagacaagc caaaaatgat ccgatgccac
    22261 cctttaatat tacacagaaa gtatctgagg atagtaatga cttttcattt agttcagtta
    22321 ccaatagttc tatattagag gatgtatcac ttattgcata tccagaaacc aattctatat
    22381 tagtcaaagg taatgatcag caaatacaga ttattcgcga tattatcact cagttagatg
    22441 tagccaaacg acatatagaa ttatcattat ggataatcga tattgataaa tctgaattaa
    22501 ataaccttgg cgttaattgg caaggaacgg cttcatttgg tgattcgttt ggtgcatcat
    22561 ttaatatgag ctcatcagca tcgataagca ctttggacgg caataagttt attgcttcag
    22621 ttatggcatt aaatcagaaa aagaaagcaa atgtagtttc aaggccggtg attttgacac
    22681 aagagaatat tccggctata tttgataata acaggacttt ttatgtgtca ttagttggtg
    22741 agcgcaattc ttcgttggag catgttacgt atggaacatt gataaatgtt atacctcgct
    22801 tttcatctca gggacaaatt gagatgtctt taacgataga ggatggaaca ggaaatagtc
    22861 agtcaaatta caattataat aatgaaaata catctgtcct tccagaagtt ggaaggacca
    22921 aaatcagtac aatagcgaga gttccacaag gcaaaagttt gttgataggt ggttatacgc
    22981 atgaaacgaa ctctaacgaa atagtatcta ttccttttct ctcctctatt cctgtaatcg
    23041 gtaatgtgtt caagtataaa acaaggaata tcagtaatat tgtaagggtt tttctgattc
    23101 aaccccgtga gataaaggag tcaagttatt ataatactgc agaatataag agcctcatat
    23161 ctgaaagaga aatacaaaag actacacaaa taatcccatc tgaaactact ttgctggaag
    23221 acgaaaaatc attggtttca tacttaaatt actaactata aagtaggtga tgtatgcttg
    23281 atgttaaaaa tacaggagtt tttagctctg cattcattga taagttgaat gcaatgacaa
    23341 attcagatga tggagatgag actgctgatg cagagcttga ttctggcttg gctaatagca
    23401 agtatattga ctcatctgat gagatggctt ccgctctttc gtcatttata aacagaagag
    23461 accttgagaa actgaaagga acaaatagtg atagtcagga acgtatttta gatggggaag
    23521 aagatgaaat taatcacaag atttttgatt taaagagaac tttaaaagat aaccttcctc
    23581 tagatcagga ttttatagac agactaaaga gatattttaa agatccaagt gatcaagtct
    23641 tagcattaag ggaacttttg aatgaaaaag atcttactgc tgaacaagtc gaatcattaa
    23701 ctaaaattat taatgagata atatcaggta gtgaaaaaag tgttaatgct ggaataaatt
    23761 cagctataca ggctaaatta tttggcaaca aaatgaaact tgaaccgcag cttttgcgtg
    23821 catgttatcg tggttttatc atggggaaca tatcaacaac agatcagtat atagaatggc
    23881 ttggtaattt tggttttaat cacagacata caattgtgaa ttttgtagag cagtcactga
    23941 ttgtagacat ggattctgag aaaccgagct gtaatgctta tgagtttggt tttgtgttat
    24001 ctaaattaat tgcaattaag atgattagaa cttcagatgt aatttttatg aagaaactgg
    24061 aatcctcaag cttgctaaaa gatggcagtt taagtgcaga gcagctattg ctaactttat
    24121 tatatatttt tcaatatcca agtgaaagtg agcaaattct tacttctgtt atagacgtat
    24181 cacgagccag tcatgaggat tctgtagtgt atcaaacata tctatcttct gttaatgaaa
    24241 gtcctcatga tatatttaaa agtgaaagtg aaagagaaat tgcgatcaat attctacgag
    24301 agcttgtcac aagtgcatac aagaaagagc tttctagata acaggagatg aaagtgatcc
    24361 agtcttttct taagcaagta agtactaagc ctgaattaat tatattagtg cttatggtta
    24421 tgatcattgc tatgttgatc ataccattac ctacatacct tgttgatttt ttaatagggc
    24481 ttaatattgt acttgctatt ctcgttttta tgggatcatt ttatattgaa agaatattga
    24541 gtttttctac attcccttcg gttttgttga taacgacatt atttcgtctc gctttatcaa
    24601 taagtactag tcgactaatt ttagttgatg cggatgcggg taaaattatt actacatttg
    24661 gccagtttgt cattggtgat agtctggctg taggttttgt tattttttca atagtaactg
    24721 ttgtgcagtt cattgttata acaaaaggat ctgaaagggt tgcggaggta gctgctcgct
    24781 tttctcttga cggtatgccg gggaaacaaa tgagcattga tgcggattta aaggctggaa
    24841 ttattgatgc cgcaggagct aaagaaagac gcagtattct ggaacgtgag agtcaattgt
    24901 atggttcatt tgatggagca atgaagttca ttaaaggtga tgcaattgct ggcatcatta
    24961 ttatttttgt caatttaata ggaggtattt ctgttggtat gagtcaacat ggaatgtctc
    25021 tatctggtgc attatctact tataccatac taactattgg tgacggattg gtctctcaga
    25081 ttcctgctct gttaatttct ataagtgcag gatttatcgt tacaagagtt aatggtgata
    25141 gcgataatat gggacgtaac ataatgtccc agatatttgg gaatcctttt gttctcattg
    25201 ttacatcagc tcttgccttg gcgataggga tgttgccagg ttttccgttt tttgtttttt
    25261 tcctgatagc agttactttg acggctttat tctattataa aaaggtcgta gaaaaagaaa
    25321 aaagtctgtc tgagtctgat tctagtggct atactggtac atttgatatt gataatagcc
    25381 atgactcatc tttggcaatg atagaaaatc tggatgctat tagttcagaa accgttcctt
    25441 taattttatt atttgccgaa aataagataa gtgcaaatga tatggaaggt cttattgaaa
    25501 ggataagaag tcagttcttt attgattatg gtgtcaggct tccaactatt ttatatagaa
    25561 caagcaatga gcttaaggtc gatgatattg ttttgttaat aaatgaggtg cgtgccgata
    25621 gttttaatat atactttgac aaagtgtgta ttacagatga aaatggagat atagatgctc
    25681 taggtattcc tgttgtttca acttcatata atgaacgtgt tatttcttgg gtagacgttt
    25741 catatacaga aaatctaact aatattgatg ctaaaattaa aagtgctcaa gatgaatttt
    25801 atcaccagtt gtcacaagct ttattaaaca acataaatga gatttttggt atacaagaaa
    25861 caaaaaatat gttagatcag tttgaaaatc ggtatcctga tctattaaag gaagtcttcc
    25921 gacatgtgac tatacagaga atttctgagg tattacaaag attgcttgga gaaaatattt
    25981 ctgttcgcaa tttaaaactt attatggagt ctttggcgct ttgggctccc agagaaaaag
    26041 atgtcataac attagttgaa catgtccgtg catcactttc taggtatatt tgtagtaaaa
    26101 tagctgtttc tggtgagatt aaagttgtga tgctttccgg atatattgag gatgcaataa
    26161 gaaaagggat aaggcaaacc tctggtggct ctttcttgaa tatggatata gaggtttcgg
    26221 atgaggtaat ggaaacttta gcacatgctt tgagagaatt gagaaatgca aaaaaaaatt
    26281 tcgttctttt ggtatcagta gatatacgta ggtttgttaa aagacttata gataacagat
    26341 ttaagagtat actcgttata tcgtatgctg agattgatga agcatatacc attaatgtat
    26401 taaagactat ttagtgaggt ttaaatatga gtaacattaa tttagttcaa ttagttagag
    26461 atagtctttt cacgattggt tgtcctccat caattattac agatttagac agccattcag
    26521 cgattaccat ttctttggat agtatgcctg ctattaatat agctcttgtc aatgagcagg
    26581 ttatgttatg ggctaatttc gatgcaccaa gtgatgtaaa acttcagtca tctgcttata
    26641 acatattaaa tttaatgtta atgaacttta gttatagcat taatgagctg gtagagcttc
    26701 atcgttctga tgagtactta cagttaagag ttgttattaa agatgactac gttcacgatg
    26761 ggattgtttt tgcagagatt ctgcatgagt tttatcagag gatggaaatc ttaaatgagg
    26821 tcttataatc aatgagctat ataaaattgc tcactcaatt atcttttcct aatagaatct
    26881 cggggccaat cttggaaaca agtcttagcg atgtttcgat tggtgagatt tgtaacattc
    26941 aggctggaat tgaaagtaat gaaattattg caagagctca ggttgtagga tttcatgatg
    27001 aaaaaacaat attaagcttg attggaaatt ctcgtggact ttcacggcaa acgttgatta
    27061 agcccactgc ccagtttctt catacgcaag tcggccgtgg attattggga gcagtagtca
    27121 atcctttagg ggaggttact gataagtttg ctgttacgga taacagtgaa attctttatc
    27181 gacctgtaga taatgctcct ccgctatata gtgaaagggc tgcaattgag aagccttttt
    27241 taacaggtgt taaggttatt gattctttac tcacgtgtgg tgaaggacag cgaatgggga
    27301 tttttgcgtc agctggttgt ggcaaaactt ttctcatgaa tatgctcatt gaacatagtg
    27361 gtgctgatat atatgttatt gggttaattg gtgagcgagg tcgagaggtt acagaaacgg
    27421 ttgattattt gaaaaactct gagaaaaaaa gcaggtgtgt tttagtatat gcaacttcgg
    27481 attactcttc ggttgatcgt tgtaatgctg catatatagc cactgctata gccgaatttt
    27541 ttaggactga aggacataaa gtagcgcttt ttattgattc attaacaagg tatgccagag
    27601 cattacgtga tgtggcctta gccgctggag aatcacctgc cagaagaggc tatccggttt
    27661 cggtttttga tagcttaccc agacttcttg aaaggccagg aaagttaaag gcaggtggct
    27721 ctattactgc attttacact gttcttttgg aggatgatga ttttgctgat ccattagctg
    27781 aagaggtaag atccatttta gatggacata tatatttgag cagaaatcta gcccaaaaag
    27841 gacaatttcc tgcaattgat tccttaaaaa gtataagcag ggtatttaca caggttgttg
    27901 atgaaaaaca tcgtattatg gccactgcat ttcgggagct actttctgaa atagaagaac
    27961 taaggacaat tattgacttt ggtgaataca aaccggggga gaatgcctct caggataaaa
    28021 tctacaacaa aatatctgtt gttgagagtt ttctgaagca agattatcga ctcggtttta
    28081 cttatgagca gacaatggag cttcttggtg aaacaattag ataaggtttt aaaaatcaaa
    28141 gataaatatc aacggtctgt taaattaatt gaagcacaca tattaacact aaaaaaaaaa
    28201 ctctttgtat cgagatgtgg aggcattaga taaaaggatt atatacttcc tgcaactgga
    28261 gaatgacttg gaacctgtag gcgctcagag tgttagtcag cttttcaata caagacgtaa
    28321 gatcgctata gtaaaaaagc atattatcca atatcagtct gaacgaattc ttctaaaggg
    28381 aagaattgaa gaaattcaaa aagatattga tgaggcaaat gcttctaaaa gaaaactgct
    28441 tcataaagag agtaaaatat gtaaacggat tggcttgatt aaaagaaata actttgccaa
    28501 acagttgata cttgatgagt tatcacaaga ggatatgaag tatggcatta gataatataa
    28561 acctaaattt tagtagtgac aaacagatag aaaaatgtga gaaactatct tcaatagata
    28621 atattgatag tctcgttttg aagaagaaga ggaaggttga aattcctgag tactctttaa
    28681 ttgcatctaa ctattttact attgataagc actttgaaca taagcatgat aaaggagaaa
    28741 tttatagtgg cattaaaaat gcgttcgaac ttagaaacga acgagcgaca tattctgata
    28801 ttccagaatc aatggccatt aaagaaaata ttttgatacc agatcaagat atcaaagcaa
    28861 gggaaaaaat aaatatcggc gatatgaggg ggatcttttc atataataag agtggaaatg
    28921 cagacaagaa cttcgaaaga agtcatactt cttctgtaaa ccctgataat ctgctagaat
    28981 ctgataatag aaatggtcaa attggtttaa aaaatcatag cttgtctatt gataagaata
    29041 ttgctgacat catttcttta ctaaatggaa gtgttgctaa atcatttgag ctgcctgtaa
    29101 tgaataaaaa tactgcagac ataaccccat ccatgtcatt gcaagaaaaa tcaatagttg
    29161 aaaatgataa aaatgttttt caaaaaaata gtgaaatgac ttaccacttt aaacagtggg
    29221 gggctggaca ttctgttagt atttcagtgg agtctggttc ttttgttcta aaaccgtcag
    29281 atcaatttgt aggaaataaa cttgacttaa ttttgaaaca agatgctgag ggtaattaca
    29341 gatttgatag cagtcaacat aataagggga ataaaaataa tagtacagga tataatgaac
    29401 agagtgaaga agaatgctaa gaattaaaca ttttgacgct aacgaaaaac tacagatttt
    29461 atatgcaaag caactctgcg agcgtttttc gattcagaca ttcaaaaata aatttacagg
    29521 cagtgaaagt ttagtcactc ttacttccgt gtgtggggat tgggtaattc gtattgatac
    29581 attatctttt ttgaaaaaaa aatacgaggt attttcagga ttttctacac aagaatcttt
    29641 actgcattta tcaaaatgtg tctttataga gtcgtcatct gtattttcga ttccagaact
    29701 gtctgataag attactttcc ggatcacgaa tgaaatccag tatgcaacta ctgggagtca
    29761 tttatgctgt ttttcctctt ctttaggtat tatttatttt gacaagatgc cggtattacg
    29821 taatcaagtt tctcttgact tattgcatca tcttttagag ttttgcttag gttcatctaa
    29881 tgtaaggctg gctactttaa aaagaattcg tactggtgat ataatcatag ttcagaaact
    29941 ttataattta ttattgtgta atcaagttat tattggggat tatattgtga atgataataa
    30001 tgaggcaaaa attaatctgt cagaaagtaa tggtgagtca gatcacacag aagtttcttt
    30061 ggcattattc aattatgatg atatcaatgt aaaagtggac tttatccttt tagaaaaaaa
    30121 gatgacaatc aatgaactaa aaatgtatgt agaaaacgaa ttattcaagt ttcccgatga
    30181 catagttaaa catgtaaata ttaaagtaaa tggttctttg gttgggcatg gggaacttgt
    30241 ttctattgag gatggttatg gtatcgagat tagttcttgg atggtaaagg agtaatctca
    30301 tgctgagtga tatgtccctc atcgctacac tttctttttt tacgctatta ccatttttag
    30361 ttgctgctgg tacttgttat ataaagtttt ctattgtttt tgtaatggta cgaaatgcac
    30421 ttggtttgca gcaggttcca tcaaatatga ctctcaatgg tattgcattg attatggctt
    30481 tgttcgtgat gaaacccatt attgaagctg gttatgaaaa ttatctaaat ggcccgcaaa
    30541 aatttgatac aatatcagat attgtccgtt tttctgattc tggcttgatt gaatacaagc
    30601 aatacttgaa aaagcataca gatcttgagt tggcacgttt tttccaaagg tctgaagaag
    30661 aaaatgctga tttaaagagt gcagagaata atgattattc attgttttcc ctcttgcctg
    30721 catatgcgct aagtgaaatt aaagatgcgt tcaaaatagg tttttattta tatttgccat
    30781 ttattgttgt tgatcttgtt atttcaagca ttttacttgc acttggtatg atgatgatga
    30841 gtccaatcac aatatcagta ccaataaaac ttgtattatt tgttgcgctt gatgggtggg
    30901 ggatcctgtc taaggccttg attgaacaat atatcaatgt tcctgcttag atgatggagg
    30961 taatgtgtct gatatagttt atatgggtaa taaggctctt tatttaatcc ttatcttttc
    31021 cttatggcca gtaggtatag ctacggttat tggattaact attggtttat tacagacagt
    31081 gactcaactt caagagcaga cacttccttt tggtataaag cttataggtg tctcaatatc
    31141 tttgctactt ctttctggat ggtatggtga ggttttattg tctttttgtc atgaaataat
    31201 gtttttaatt aagagtgggg tttgatggac atttcaagct ggttcgaaag tattcatgtg
    31261 tttttaatac tcctgaacgg cgtttttttt agattggctc cattattttt ctttcttcca
    31321 tttttaaata acggtataat ttctccatct attagaatac ctgtgatttt tcttgttgca
    31381 tcaggattaa ttacttctgg taaggtagac ataggttctt ctgtttttga acatgtttat
    31441 ttccttatgt tcaaggaaat aattgttggc ctccttctct ctttttgctt gtctcttccc
    31501 ttttggatat ttcatgctgt tggtagtatt attgacaacc agcgtggggc aacgcttagt
    31561 agttcaattg atcctgccaa tggtgttgat acgtctgaat tggcaaaatt tttcaatctt
    31621 ttttctgcag ttgtatttct atacagtggt ggaatggtct ttattttaga atccatacaa
    31681 ttgtcttata atatatgccc gttattttct caatgttctt tccgtgtctc aaatatctta
    31741 acatttctga ctttattggc aagtcaggct gttattttag ccagtcctgt tatgatagta
    31801 ttgttactat cagaagtatt acttggtgta ttatcgagat ttgctccgca gatgaatgct
    31861 ttttccgtat cattaactat taaaagttta cttgcaatat ttattatttt catctgttct
    31921 tctactattt acttttctaa agttcaattt ttcctcggtg aacataaatt tttcacaaat
    31981 ctatttgtta gataaaatat tatggcaaat aaaacagaaa agccgacacc taaaaaacta
    32041 aaggatgccg caaaaaaagg acagtcattt aaatttaagg atttaacgac agttgttatt
    32101 attctggtag ggacatttac tataatatca ttcttttcct taagtgatgt aatgctctta
    32161 tacagatatg taataattaa tgacttcgaa attaatgagg gtaaatactt ttttgcagtg
    32221 gttattgtct tttttaagat aattggcttc ccactttttt tctgtgttct ttcggctgtg
    32281 ttgccaacat tggttcaaac aaagtttgtt cttgcgacta aagctatcaa gattgatttt
    32341 tcagtattaa accctgttaa agggttaaaa aaaatattta gtataaagac aataaaagaa
    32401 tttttcaaaa gcattctgct tcttattatt ctagcattaa caacctattt cttttggatt
    32461 aatgaccgaa aaataatttt ttctcaggtg ttttctagtg ttgatggctt atatcttatt
    32521 tggggggggc tatttaagga tataatatta tttttcttag cattttctat ttttgttatt
    32581 attcttgact ttgtgattga gttcatttta tacatgaaag atatgatgat ggataaacag
    32641 gagataaaaa gagaatatat agagcaagag ggacactttg agacaaagtc gagaaggcgt
    32701 gagttgcata tcgagattct ttcagagcag actaaatctg atatacgtaa ttcaaaatta
    32761 gtggtaatga acccgactca tattgcaatt ggtatttatt ttaatccaga aatagcgcct
    32821 gcacctttta tttctctcat tgaaactaac cagtgtgcct tggctgtcag aaaatatgca
    32881 aatgaagttg gtataccaac tgtgcgtgat gtgaaattag ctagaaaact atataaaaca
    32941 catacaaaat atagttttgt tgattttgaa cacttggatg aagtcctacg tcttattgtt
    33001 tggcttgagc aggttgaaaa cactcattaa taagtaaagg agatgtgtta tatgggagtt
    33061 aatttctgta ataaaatagg tattgatcag tctgaatttg aaatagaatc ttccatcatt
    33121 aactccattg ctaatgaggt attgaaccca atatctttcc ttagcaacaa ggatataata
    33181 aatgttttac tcagaaagat ttcatctgaa tgtgacctgg ttagaaaaga catttatcgt
    33241 tgtgctcttg agttggtcgt tgaaaaaaca cctgatgatt tataatcatt cataataact
    33301 cttttgttga tataaatatt tttgttgaag atatttatgt agtcacagga tcaattgtag
    33361 aaaattgtta tgtttttgtt aggaactgaa ctaaataata tatgataaga cagcaaaaac
    33421 gactgaccat aatccttctt ttattaggag ttgataagag agactattca tcctgtaatg
    33481 ttaaaactct gttatatagt attcgcgatt atgcaaagtc tgtaaatgat catgagatac
    33541 taaccgagag taatcgttta ttatctcatt gcatttcaga tagtaacgga gctttcttta
    33601 aaagtagtaa atacgttccc cttaagtact tacgtaaaag gagaatagca cgaaagatac
    33661 caaatgatta gcactttgct agtaagcttg ctggtaaact atattgaccg ttgggtttgt
    33721 tttgagactg taatttaaat tgtgtaattg cctgtttttg atatgtttac tccaacaacg
    33781 gagacaggta aattatggac gaaaagaagc ttaaagccct tgcggctgaa ctggctaaag
    33841 gcctcaaaac tgaggccgac ctcaatcagt tttcccgtat gctgacgaaa tatcccggct
    33901 cttaaaacga tagtggctca ggctttcatt tttcagcgtt ccccagaaga tttccatcgg
    33961 agcgttgtcg taacagttac ctttacgcga cattgatgtt ttcagaccag actgctcctg
    34021 tatgacccgg taatcgtatg cgcagtactg tgaacctcga tcggtgtggt ggattagccc
    34081 ggcaggtggg cgctggctcc tgagcgccat aaacaggg
//
LOCUS       DADMJB010000024        33934 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.024, whole genome shotgun sequence.
ACCESSION   DADMJB010000024 DADMJB010000000
VERSION     DADMJB010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 33934)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 33934)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..33934
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.024"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..110)
                     /locus_tag="JN078_001049"
     CDS             complement(<1..110)
                     /locus_tag="JN078_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001371617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein Rhs"
                     /protein_id="HAY9040327.1"
                     /translation="MSGKPAARQGDMTQYGGSIVQGSAGVRIGAPTGVACS"
     gene            complement(270..482)
                     /gene="rpmE"
                     /locus_tag="JN078_001050"
     CDS             complement(270..482)
                     /gene="rpmE"
                     /locus_tag="JN078_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HAY9040328.1"
                     /translation="MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFF
                     TGKQRDVATGGRVDRFNKRFNIPGSK"
     gene            685..2883
                     /gene="priA"
                     /locus_tag="JN078_001051"
     CDS             685..2883
                     /gene="priA"
                     /locus_tag="JN078_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HAY9040329.1"
                     /translation="MPVAHVALPVPLPRTFDYLLPEGMTVKAGCRVRVPFGKQQERIG
                     VVVSVSDVSELPLNELKAVVEVLDVEPVFTHSVWRLLLWAADYYHHPIGDVLFHALPI
                     LLRQGRPAANAPMWYWFATEQGQAVDLNSLKRSPKQQQALAALRQGKIWRDQVATLEF
                     NDAALQALRKKGLCDLASETPEFSDWRTNYAVSGERLRLNTEQATAVGAIHSAADTFS
                     AWLLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERFNAPVEVL
                     HSGLNDSERLSAWLKAKNGEAAIVIGTRSALFTPFKNLGVIVIDEEHDSSYKQQEGWR
                     YHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNACPAIQHVL
                     DLKGQKVQAGLAPALITRMRQHLQANNQVILFLNRRGFAPALLCHDCGWIAECPRCDH
                     YYTLHQAQQHLRCHHCDSQRPVPRQCPSCGSTHLVPVGLGTEQLEQTLAPMFPGVPIS
                     RIDRDTTSRKGALEQQLAEVHRGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSA
                     DFRSAERFAQLYTQVAGRAGRAGKQGEVVLQTHHPEHPLLQTLLYKGYDAFAEQALAE
                     RRMMQLPPWTSHVIVRAEDHNNQHAPLFLQQLRNLILSSPLADDKLWILGPVPALAPK
                     RGGRWRWQILLQHPSRVRLQHIISGTLALINTIPDSRKVKWVLDVDPIEG"
     gene            3039..4064
                     /gene="cytR"
                     /locus_tag="JN078_001052"
     CDS             3039..4064
                     /gene="cytR"
                     /locus_tag="JN078_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CytR"
                     /protein_id="HAY9040330.1"
                     /translation="MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRV
                     EKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDPFFSEIIRGIEVTAANHGYLVLI
                     GDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
                     LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVD
                     PQYIARGDFTFEAGSKAMQQLLDLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLS
                     IIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHVGSGSRLMDCELIIR
                     GSTRALP"
     gene            4156..5115
                     /gene="ftsN"
                     /locus_tag="JN078_001053"
     CDS             4156..5115
                     /gene="ftsN"
                     /locus_tag="JN078_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HAY9040331.1"
                     /translation="MAQRDYVRRSQPAPSRRKKSTSRKKQRNLPAVSPAMVAIAAAVL
                     VTFIGGLYFITHHKKEESETLQSQKVTGNGLPPKPEERWRYIKELESRQPGVRAPTEP
                     SAGGEVKTPEQLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQ
                     QLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTT
                     AQSKPQQAAPVARAADAPKPTAEKKDERRWMVQCGSFRGAEQAETVRAQLAFEGFDSK
                     ITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAAGG"
     gene            5208..5738
                     /gene="hslV"
                     /locus_tag="JN078_001054"
     CDS             5208..5738
                     /gene="hslV"
                     /locus_tag="JN078_001054"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008457544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HAY9040332.1"
                     /translation="MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVI
                     AGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADET
                     ASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDIC
                     IYTNHFHTIEELSYKA"
     gene            5748..7079
                     /gene="hslU"
                     /locus_tag="JN078_001055"
     CDS             5748..7079
                     /gene="hslU"
                     /locus_tag="JN078_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019841241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HslU--HslV peptidase ATPase subunit"
                     /protein_id="HAY9040333.1"
                     /translation="MSEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEEL
                     RHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD
                     LTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFR
                     KKLREGQLDDKEIEIDLAAAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKI
                     KDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREG
                     VQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQA
                     LTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGA
                     RRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL"
     gene            7146..8072
                     /gene="menA"
                     /locus_tag="JN078_001056"
     CDS             7146..8072
                     /gene="menA"
                     /locus_tag="JN078_001056"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HAY9040334.1"
                     /translation="MTEQQISRTQAWLESLRPKTLPLAFAAIIVGTALAWWQGHFDPL
                     VALLALITAGLLQILSNLANDYGDAVKGSDRPDRIGPLRGMQKGVITQQEMKRALIIT
                     VVLICLSGLALVAVACHTLADFVGFLILGGLSIIAAITYTVGNRPYGYIGLGDISVLV
                     FFGWLSVMGSWYLQAHTLIPALILPATACGLLATAVLNINNLRDINSDRENGKNTLVV
                     RLGEVNARRYHACLLMGSLVCLALFNLFSLHSLWGWLFLLAAPLLVKQARYVMREMDP
                     VAMRPMLERTVKGALLTNLLFILGIFLSQWAA"
     gene            8165..8650
                     /gene="rraA"
                     /locus_tag="JN078_001057"
     CDS             8165..8650
                     /gene="rraA"
                     /locus_tag="JN078_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001392924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E activity regulator RraA"
                     /protein_id="HAY9040335.1"
                     /translation="MKYDTSELCDIYQEDVNVVEPLFSNFGGRASFGGQIITVKCFED
                     NGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDL
                     EELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI
                     E"
     gene            complement(8735..8980)
                     /gene="zapB"
                     /locus_tag="JN078_001058"
     CDS             complement(8735..8980)
                     /gene="zapB"
                     /locus_tag="JN078_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring assembly protein ZapB"
                     /protein_id="HAY9040336.1"
                     /translation="MTMSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ
                     NAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV"
     gene            9406..10251
                     /gene="glpF"
                     /locus_tag="JN078_001059"
     CDS             9406..10251
                     /gene="glpF"
                     /locus_tag="JN078_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol uptake facilitator protein GlpF"
                     /protein_id="HAY9040337.1"
                     /translation="MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEI
                     SVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAA
                     LVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILM
                     GLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAG
                     WGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHLPCDICVVKEKETTTPSE
                     QKASL"
     gene            10274..11782
                     /gene="glpK"
                     /locus_tag="JN078_001060"
     CDS             10274..11782
                     /gene="glpK"
                     /locus_tag="JN078_001060"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HAY9040338.1"
                     /translation="MTEKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPG
                     WVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAI
                     VWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGE
                     LLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEV
                     RRSSEVYGQTNIGGKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNT
                     GEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFA
                     TKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDV
                     LEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGL
                     AVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAGWKKAVKRAMAWEEHDE"
     gene            11917..12927
                     /gene="glpX"
                     /locus_tag="JN078_001061"
     CDS             11917..12927
                     /gene="glpX"
                     /locus_tag="JN078_001061"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HAY9040339.1"
                     /translation="MRRELAIEFSRVTESAALAGYKWLGRGDKNTADGAAVNAMRIML
                     NQVNIDGTIVIGEGEIDEAPMLYIGEKVGTGRGDAVDIAVDPIEGTRMTAMGQANALA
                     VLAVGDKGCFLNAPDMYMEKLIVGPGAKGTIDLNLPLADNLRNVAAVLGKPLSELTVT
                     ILAKPRHDAVIAEMQQLGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGVVSA
                     AVIRALDGDMNGRLLARHDVKGDNEENRRIGEQELARCKAMGIEAGKVLRLGDMARSD
                     NVIFSATGITKGDLLEGISRKGNIATTETLLIRGKSRTIRRIQSIHYLDRKDPEMQVH
                     IL"
     gene            13024..13770
                     /gene="fpr"
                     /locus_tag="JN078_001062"
     CDS             13024..13770
                     /gene="fpr"
                     /locus_tag="JN078_001062"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP(+) reductase"
                     /protein_id="HAY9040340.1"
                     /translation="MADWVTGKVTKVQNWTDALFSLTVHAPVLPFTAGQFTKLGLEID
                     GERVQRAYSYVNSPDNPDLEFYLVTVPDGKLSPRLAALKPGDEVQVVSEAAGFFVLDE
                     VPDCETLWMLATGTAIGPYLSILQLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEK
                     RYEGKLRIQTVVSRETAAGSLTGRIPALIESGELESAIGLPMNKETSHVMLCGNPQMV
                     RDTQQLLKETRQMTKHLRRRPGHMTAEHYW"
     gene            complement(13775..14203)
                     /gene="uspD"
                     /locus_tag="JN078_001063"
     CDS             complement(13775..14203)
                     /gene="uspD"
                     /locus_tag="JN078_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspD"
                     /protein_id="HAY9040341.1"
                     /translation="MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLS
                     ELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWPKTKLRIERGEMPETLLEIMQKE
                     QCDLLVCGHHHSFINRLMPAYRGMINKMSADLLIVPFIDK"
     gene            complement(14230..14529)
                     /locus_tag="JN078_001064"
     CDS             complement(14230..14529)
                     /locus_tag="JN078_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF406 domain-containing protein"
                     /protein_id="HAY9040342.1"
                     /translation="MKDVVDKCSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFM
                     TKLKELAAAASSADEGASVAYKIKDLEGQVELDAAFTFSCQAEMIIFELSLRSLA"
     gene            complement(14741..15181)
                     /locus_tag="JN078_001065"
     CDS             complement(14741..15181)
                     /locus_tag="JN078_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HAY9040343.1"
                     /translation="MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDI
                     QTAAFCLVCLLWPTAAVTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVG
                     CFVPTLILVMMLIDLGAFVGTQGENKYGKDTQDVKYKADNKSSN"
     gene            15282..15881
                     /locus_tag="JN078_001066"
     CDS             15282..15881
                     /locus_tag="JN078_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiQ family protein"
                     /protein_id="HAY9040344.1"
                     /translation="MKPGCTLFFLLCSALTVTTTAHAQTPDTATTAPYLLAGAPTFDL
                     SISQFREDFNSQNPSLPLNEFRAIDSSPDKANLTRAASKINENLYASTALERGTLKIK
                     SIQMTWLPIQGPEQKAAKAKAQEYMAAVIRTLTPLMTKTQSQKKLQSLLTAGKNKRYY
                     TETEGALRYVVADNGEKGLTFAVEPIKLALSESLEGLNK"
     gene            15989..16756
                     /gene="tpiA"
                     /locus_tag="JN078_001067"
     CDS             15989..16756
                     /gene="tpiA"
                     /locus_tag="JN078_001067"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HAY9040345.1"
                     /translation="MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPE
                     MYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYH
                     KESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFE
                     GAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNA
                     AELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA"
     gene            complement(16811..17566)
                     /gene="cdh"
                     /locus_tag="JN078_001068"
     CDS             complement(16811..17566)
                     /gene="cdh"
                     /locus_tag="JN078_001068"
                     /EC_number="3.6.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol diphosphatase"
                     /protein_id="HAY9040346.1"
                     /translation="MKKAGLLFLVMIVIAVVAAGIGYWKLTGEESDTLRKIVLEECLP
                     NQQQNQNPSPCAEVKPNAGYVVLKDLNGPLQYLLMPTYRINGTESPLLTDPSTPNFFW
                     LAWQARDFMSKKYGQPVPDRAVSLAINSRTGRTQNHFHIHISCIRPDVREQLDNNLAN
                     ISSRWLPLPGGLRGHEYLARRVTESELVQRSPFMMLAEEVPEAREHMGSYGLAMVRQS
                     DNSFVLLATQRNLLTLNRASAEEIQDHQCEILR"
     gene            complement(17673..18662)
                     /locus_tag="JN078_001069"
     CDS             complement(17673..18662)
                     /locus_tag="JN078_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY9040347.1"
                     /translation="MNKWGVGLTFLLAATSVMAKDIQLLNVSYDPTRELYEQYNKAFS
                     AHWKQQTGDNVVMRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKEWI
                     KRLPDNSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAW
                     GYALHHNNNDQAKAQDFVRALYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLA
                     ANELGKDKFEIVTPSESILAEPTVSVVDKVVEKKGTKEVAEAYLKYLYSPEGQEIAAK
                     NYYRPRDAEVAKKYENAFPKLKLFTIDEEFGGWTKAQKEHFANGGTFDQISKR"
     gene            complement(18982..19944)
                     /gene="pfkA"
                     /locus_tag="JN078_001070"
     CDS             complement(18982..19944)
                     /gene="pfkA"
                     /locus_tag="JN078_001070"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HAY9040348.1"
                     /translation="MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLG
                     LYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIG
                     GDGSYMGSMRLTEMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSS
                     HQRISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAI
                     VAITEHMCDVDELAHFIEKETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLL
                     LAGYGGRCVGIQNEQLVHHDIIDAIENMKRPFKGDWLDCAKKLY"
     gene            complement(20125..21027)
                     /gene="fieF"
                     /locus_tag="JN078_001071"
     CDS             complement(20125..21027)
                     /gene="fieF"
                     /locus_tag="JN078_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312867.1"
                     /note="FieF, a metal efflux transporter, is a member of
                     the CDF (cation diffusion facilitator) family of
                     transporters; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter FieF"
                     /protein_id="HAY9040349.1"
                     /translation="MNQSYGRLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALV
                     DSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGI
                     QHLISPTPMIDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMM
                     NGAILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEI
                     IDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFP
                     GSDVIIHQDPCSVVPREGKRSMLS"
     gene            complement(21175..21687)
                     /gene="cpxP"
                     /locus_tag="JN078_001072"
     CDS             complement(21175..21687)
                     /gene="cpxP"
                     /locus_tag="JN078_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell-envelope stress modulator CpxP"
                     /protein_id="HAY9040350.1"
                     /translation="MRIVTAAVMASTLAVSSLSHAAEVGSGDNWHPGEELTQRSTQRS
                     TQSHMFDGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTAENFDENAVRAQ
                     AEKMANEQIARQVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQWQKSSSLK
                     LLSSSNSRSQ"
     gene            21837..22535
                     /gene="cpxR"
                     /locus_tag="JN078_001073"
     CDS             21837..22535
                     /gene="cpxR"
                     /locus_tag="JN078_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response regulator transcription
                     factor CpxR"
                     /protein_id="HAY9040351.1"
                     /translation="MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS
                     IDLLLLDVMMPKKNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPF
                     NDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGT
                     EFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWF
                     KTLRGRGYLMVSAS"
     gene            22532..23905
                     /gene="cpxA"
                     /locus_tag="JN078_001074"
     CDS             22532..23905
                     /gene="cpxA"
                     /locus_tag="JN078_001074"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress sensor histidine kinase CpxA"
                     /protein_id="HAY9040352.1"
                     /translation="MIGSLTARIFAIFWLTLALVLMLVLMLPKLDSRQMTELLDSEQR
                     QGLMIEQHVEAELANDPPNDLMWWRRLFRAIDKWAPPGQRLLLVTTEGRVIGAERSEM
                     QIIRNFIGQADNADHPQKKKYGRVELVGPFSVRDGEDNYQLYLIRPASSSQSDFINLL
                     FDRPLLLLIVTMLVSTPLLLWLAWSLAKPARKLKNAADEVAQGNLRQHPELEAGPQEF
                     LAAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRRRSGESKELER
                     IETEAQRLDSMINDLLVMSRNQQKNALVSETIKANQLWSEVLDNAAFEAEQMGKSLTV
                     NFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDGITITVDDDGPGVS
                     PEDREQIFRPFYRTDEARDRESGGTGLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIW
                     LPLYKRS"
     gene            complement(24011..24685)
                     /gene="yiiM"
                     /locus_tag="JN078_001075"
     CDS             complement(24011..24685)
                     /gene="yiiM"
                     /locus_tag="JN078_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418346.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-N-hydroxylaminopurine resistance protein"
                     /protein_id="HAY9040353.1"
                     /translation="MRYPVDVYTGKIQAYPEGKPSAIAKIQVDGELMLTELGLEGDEQ
                     AEKKVHGGPDRALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGLTESNVYMGD
                     IFRWGEALIQVSQPRSPCYKLNYHFDISDIAQLMQNTGKVGWLYSVIAPGKVSADAPL
                     ELVSRVSDVTVQEAAAIAWHMPFDDDQYHRLLSAAGLSKSWTRTMQKRRLSGKIEDFS
                     RRLWGK"
     gene            complement(24834..25799)
                     /gene="kdgT"
                     /locus_tag="JN078_001076"
     CDS             complement(24834..25799)
                     /gene="kdgT"
                     /locus_tag="JN078_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001309889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxygluconate transporter"
                     /protein_id="HAY9040354.1"
                     /translation="MRKSRGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVSI
                     LAVWFFCMGASIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAG
                     LSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASF
                     EPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGL
                     LGILLGVAVIIVTGIPLIIADKLIGGGDGTAGIAASSSAGAAVATPMLIAEMVPAFKP
                     MAPAATSLVATAVIVTSILVPILTSIWSRKVKARAAKIEILGTVK"
     gene            complement(26078..26698)
                     /gene="sodA"
                     /locus_tag="JN078_001077"
     CDS             complement(26078..26698)
                     /gene="sodA"
                     /locus_tag="JN078_001077"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010345169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Mn]"
                     /protein_id="HAY9040355.1"
                     /translation="MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALE
                     SLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA
                     IERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGAS
                     GFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAKK"
     gene            26982..28016
                     /gene="rhaT"
                     /locus_tag="JN078_001078"
     CDS             26982..28016
                     /gene="rhaT"
                     /locus_tag="JN078_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose/proton symporter RhaT"
                     /protein_id="HAY9040356.1"
                     /translation="MSNAITMGIFWHLIGAASAACFYAPFKKVKKWSWETMWSVGGIV
                     SWIILPWAISALLLPNFWAYYSSFSLSTLLPVFLFGAMWGIGNINYGLTMRYLGMSMG
                     IGIAIGITLIVGTLMTPIINGNFDVLLNTEGGRMTLLGVLVALIGVGIVTRAGQLKER
                     KMGIKAEEFNLKKGLVLAVMCGIFSAGMSFAMNAAKPMHEAAAALGVDPLYVALPSYV
                     IIMGGGAIINLGFCFIRLAKVKDLSLKADFSLAKPLIIHNVLLSALGGLMWYLQFFFY
                     AWGHARIPAQYDYISWMLHMSFYVLCGGIVGLVLKEWNNAGRRPVTVLSLGCVVIIVA
                     ANIVGIGMAN"
     gene            complement(28013..28951)
                     /gene="rhaR"
                     /locus_tag="JN078_001079"
     CDS             complement(28013..28951)
                     /gene="rhaR"
                     /locus_tag="JN078_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator RhaR"
                     /protein_id="HAY9040357.1"
                     /translation="MAFCNNANLLNVFVRHIANNQLRSLAEVATVAHQLKLLKDDFFA
                     SDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHADD
                     KHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFSASAGQPHWRLGSVGMAQARQVI
                     GQLEHESSQHVSFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETLLDKLITRLAAS
                     LKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISD
                     ISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQKD"
     gene            complement(28935..29771)
                     /gene="rhaS"
                     /locus_tag="JN078_001080"
     CDS             complement(28935..29771)
                     /gene="rhaS"
                     /locus_tag="JN078_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator RhaS"
                     /protein_id="HAY9040358.1"
                     /translation="MTVLHSVDFFPSGNASVAIEPRLPQADFPEHHHDFHEIVIVEHG
                     TGIHVFNGQPYTITGGTVCFVRDHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLL
                     PQELDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKS
                     SLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQR
                     YLNRLRLMKARHLLRHSEASVTDIAYRCGFSDSNHFSTLFRREFNWSPRDIRQGRDGF
                     LQ"
     gene            30059..31471
                     /gene="rhaB"
                     /locus_tag="JN078_001081"
     CDS             30059..31471
                     /gene="rhaB"
                     /locus_tag="JN078_001081"
                     /EC_number="2.7.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulokinase"
                     /protein_id="HAY9040359.1"
                     /translation="MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHS
                     QNGYVTWNVDSLESAIRLGLNKVCEEGIRIDSIGIDTWGVDFVLLDQQGQRVGLPVAY
                     RDSRSNGLMAQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLM
                     PDYFSYRLTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIG
                     HWICPQGNEIPVVAVASHDTASAVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTA
                     LAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPALIAATQALPACRFIINP
                     NDDRFINPEAMCSEIQAACRETAQPIPESDAELAQLRGEDFSQLHIVGGGCQNTLLNQ
                     LCADACGIRVIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTTANLTTFTPNPDS
                     EIAHYVAQLHSTRQTKELCA"
     gene            31468..32727
                     /gene="rhaA"
                     /locus_tag="JN078_001082"
     CDS             31468..32727
                     /gene="rhaA"
                     /locus_tag="JN078_001082"
                     /EC_number="5.3.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose isomerase"
                     /protein_id="HAY9040360.1"
                     /translation="MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDD
                     VSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNFHAIYLESD
                     TPVSRDQIKPEHFKNWGEWAKANQLGLDFNPSCFSHPLSADGFTLSHPDDSIRQFWID
                     HCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISKKLNP
                     AHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAA
                     MLYVPQLLLHVSRPVRWDCDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINR
                     IAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYC
                     QRHDTPAGSEWLESVRAYEKEILSQRG"
     gene            32810..33634
                     /gene="rhaD"
                     /locus_tag="JN078_001083"
     CDS             32810..33634
                     /gene="rhaD"
                     /locus_tag="JN078_001083"
                     /EC_number="4.1.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulose-1-phosphate aldolase"
                     /protein_id="HAY9040361.1"
                     /translation="MQNITQSWFVQGMIKATTDAWLKGWDERNGGNLTLRLDDADIAP
                     YKDNVHAQPRYIPLSQPMPLLANTPFIVTGSGKFFRNVQLDPAANLGVVKVDSDGAGY
                     HILWGLTNEAVPTSELPAHFLSHCERIKATNGKDRVIMHCHATNLIALTYVLENDTAV
                     FTRQLWEGSTECLVVFPDGVGILPWMVPGTDEIGQATAQEMQKHSLVLWPFHGVFGSG
                     STLDETFGLIDTAEKSAQVLVKVYSMGGMKQTISREELIALGKRFGVTPLASALAL"
     gene            33644..>33934
                     /gene="rhaM"
                     /locus_tag="JN078_001084"
     CDS             33644..>33934
                     /gene="rhaM"
                     /locus_tag="JN078_001084"
                     /EC_number="5.1.3.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HAY9040362.1"
                     /translation="MIRKAFVMQVNPDAHEEYQRRHNPIWPELEAVLKSHGAHNYAIY
                     LDKARNLLFATVEIESEERWNAVASTDVCQRWWKYMTDVMPANPDNSPVSSEL"
BASE COUNT         8324 a         8848 c         8795 g         7967 t
ORIGIN      
        1 gaacaggcca cgccggtggg agcaccaatg cgcaccccgg ctgaaccctg aacaatgcta
       61 ccgccatact gcgtcatgtc gccctgacgc gccgccggtt ttccgctcat cgtaaaatcc
      121 ttttgaaata aataagaacc agaagcctag cgccagtcaa caacaggaaa tgataatgag
      181 ttaacacccc ggaatttttc agaatttata aaaggcaaaa ttcaggcaca aaaaaagcgc
      241 cgtgcggcgc ttttttcgga aatccggtct tatttgctgc ccgggatgtt gaaacgcttg
      301 ttgaagcggt caacacggcc accggtagca acatcacgct gtttgccagt gaagaacggg
      361 tggcacttgc tgcacacgtc gaggttcagg tcatgaccaa cagtggagcg gattttcatt
      421 acgttaccgc aagagcagct agcagtaatt tcttcgtatt tcgggtgaat atcttttttc
      481 atgggaaaac ctcggtttaa ggccgcgtcg ctcttccagc cctaacgcca gacaccacgc
      541 gatgttaaaa gtatagcttc aatacgatca tttcgtacga aggcgcgaaa tcatacagaa
      601 attaaccagc gtatgcaaac tgatccgcac tcttctacgg caatgtgtat actaacccac
      661 cgaatttcaa gtcaggatga tgctatgccc gttgcccacg ttgccttgcc cgttccgctt
      721 cctcgtacct ttgactatct gctgccagaa ggcatgacgg ttaaagccgg gtgtcgcgtg
      781 cgcgtgccgt ttggcaaaca gcaggagcgc atcggggttg tggtgtcagt tagcgatgtc
      841 agtgagctgc cgcttaacga gctgaaagcg gtagtggaag tgctggacgt tgagccggta
      901 tttactcact ccgtctggcg gttactgctc tgggcggcag attactatca tcatccgatt
      961 ggcgatgtgc tgtttcatgc cttgccgatt ttactgcgcc aggggcggcc tgcggcgaac
     1021 gcgccgatgt ggtactggtt tgccactgaa caaggccagg cggtggatct gaacagcctg
     1081 aaacgctccc ccaagcaaca acaggcgctg gcggcgttac ggcaaggcaa aatctggcgc
     1141 gaccaggtcg ccacgctcga atttaatgat gccgcgttgc aggcgctacg caaaaaaggt
     1201 ctgtgtgatt tagcaagtga aacaccagag tttagcgact ggcgaacgaa ctatgccgtt
     1261 tctggtgagc ggttgcgatt gaataccgaa caggccaccg ccgttggcgc aattcatagc
     1321 gcggcagata ctttttctgc ctggctgctg gcgggcgtta ccggttccgg taaaacggag
     1381 gtttatctca gtgtactgga aaacgtgctc gctcagggca aacaggcgct ggtgatggtg
     1441 ccggaaatcg gcctgacacc gcaaactatc gcccgttttc gtgaacgttt taatgccccc
     1501 gtggaagttc tgcattccgg cctgaacgac agcgagcggc tttctgcgtg gttgaaagcg
     1561 aaaaatggcg aggcggcgat tgtgatcggc acccgctccg cgctgtttac gccgtttaaa
     1621 aatctcggcg tgattgtcat tgatgaagag cacgacagct cctacaagca gcaggaaggc
     1681 tggcgctatc atgcccgcga cctggcggtg tatcgtgcgc acagcgagca aatcccgatt
     1741 attcttggct ccgcaacgcc cgcgctggaa acgttatgca acgtccagca gaaaaaatac
     1801 cgcctgctgc gcctgacccg tcgggcaggg aatgcttgtc cggcaattca acatgtgctg
     1861 gatttaaaag gtcagaaggt gcaggcaggt ctggctccgg cgttaatcac ccgtatgcgc
     1921 cagcatttac aggccaacaa tcaggttatc ctctttctta atcgtcgggg ttttgcgcct
     1981 gcgctgctgt gccacgactg cggctggata gccgaatgcc cacgttgcga tcactactac
     2041 acgctgcatc aggcgcaaca gcatttgcgc tgtcaccact gtgacagtca gcgtccggtg
     2101 ccgcgccagt gcccttcctg cggttccacg cacctggtcc ccgtggggct gggcaccgaa
     2161 cagcttgaac agacgcttgc gccgatgttc cccggcgtgc ccatttcacg tatcgaccgc
     2221 gataccacca gccgcaaagg ggcactggaa cagcaactgg cggaagtgca tcgcggcggc
     2281 gcgaggattt tgatcggcac acaaatgctg gcgaaaggtc accactttcc ggatgtgacg
     2341 ctggtggcgt tactggatgt ggacggcgcg ctgttttctg ccgattttcg ctcggcagaa
     2401 cgtttcgccc agctttacac ccaggtcgcc ggtcgtgccg ggcgtgcggg taaacagggc
     2461 gaagtggtgc tgcaaacgca ccatccggaa catcctctgt tgcaaacgtt gctctataaa
     2521 ggctacgacg cctttgccga acaggcgctg gctgagcgac gcatgatgca gctgccgccg
     2581 tggaccagcc atgtgattgt gcgtgcggaa gatcataaca atcagcacgc gccgctgttc
     2641 ctgcaacaac tgcgtaatct gatcctttcc agcccgctgg cagacgacaa actgtggatt
     2701 ctcggcccgg ttccggctct ggcacctaag cgtggtggcc gctggcgctg gcagatcttg
     2761 ttgcagcacc cttcccgcgt gcgcttgcaa cacatcatta gtggtacgct ggcgcttatt
     2821 aatacaatac cggattcccg caaggtgaaa tgggtgttgg atgtcgatcc catcgaaggc
     2881 taatgcgcaa acgttgcgag gcggatcgaa aaattcaata ttcatcacac ttttcatgaa
     2941 aattctgtaa ccgttttcac gcgctatctg ctaaaaatgt tgccgatgtg aagtaaacat
     3001 ggatgtagta cgcctgacgt accaggcgag gagtgagtgt gaaagcgaag aagcaggaaa
     3061 ctgccgcgac catgaaagac gttgccctca aggcaaaagt ctctacagcg actgtctccc
     3121 gagcattaat gaatcccgat aaagtctccc aggccacccg taatcgggtt gaaaaagcgg
     3181 cccgggaagt gggttattta ccgcagccta tggggcgcaa cgtcaagcgt aatgaatccc
     3241 gcaccattct ggtgattgtc ccggatatct gcgatccctt ctttagcgaa attattcgcg
     3301 gtatcgaagt tacggcggca aatcacggat atctggtgct gattggcgac tgtgcgcatc
     3361 aaaatcagca ggaaaaaacc tttatcgatt tgatcatcac caagcaaatt gatggcatgt
     3421 tgctgctggg ttcaaggctg ccgtttgatg ccagcattga ggaacagcgt aatctgccgc
     3481 cgatggtgat ggcgaacgaa tttgcaccgg aactggagct gcctaccgtt catatcgaca
     3541 atctgaccgc cgcatttgat gcagtaaatt atttatatga gcaagggcat aaacggattg
     3601 gctgtatagc cggtcccgaa gagatgccac tgtgtcacta ccgcctgcaa ggctatgttc
     3661 aggcgctgcg tcgctgcgga attatggttg atccacaata catcgcccgt ggcgacttca
     3721 ccttcgaagc cggaagcaaa gcaatgcaac agctgcttga tcttccacaa ccgcctactg
     3781 cagtcttctg ccatagcgat gtgatggcgc tcggcgcact ttctcaggca aaacgccagg
     3841 ggctgaaagt cccggaagac ctttccataa tcggttttga taacatcgac ctgacgcaat
     3901 tttgtgatcc gccgctgaca accatcgcgc agccgcgtta cgaaatcggt cgggaagcta
     3961 tgctgttatt gcttgatcaa atgcaggggc aacacgttgg cagtggctct cgtttaatgg
     4021 actgcgaact tatcatccgg ggatcaacac gcgcgttacc ttaaagtaaa cctttaagac
     4081 tgccgtgact ggtcaaaggc ccgccgctta agtaacatgg cgggctgacg aacgaataaa
     4141 tacagcgaaa cgatagtggc acaacgagat tatgtacgcc gcagccaacc ggcaccttcg
     4201 cggcgaaaaa agagcacctc acggaaaaag caacgaaatc tgcctgcggt ttctcccgct
     4261 atggtcgcta ttgctgccgc cgttcttgtg acctttatcg gtggtctgta cttcattacg
     4321 catcacaaga aagaagagtc cgagacgctg caaagccaga aagtgaccgg aaacggacta
     4381 ccaccaaaac cagaagaacg ctggcgctac attaaagagc tggaaagtcg ccagccgggt
     4441 gtgcgtgcgc ccacagaacc ttctgccggt ggtgaagtga aaacgccgga gcaactgaca
     4501 ccagaacaac gtcagcttct tgaacaaatg caggctgata tgcgccagca gccaacgcag
     4561 ctggttgagg ttccgtggaa tgaacagacg ccggaacagc gtcagcaaac gctacaacgc
     4621 cagcgtcagg cgcagcaatt agcggagcag caacgcctgg ctcagcagtc gcgtacgact
     4681 gaacaaagct ggcagcagca gacgcgtacg tcgcaagccg cgccggtaca ggcgcaaccg
     4741 cgccagtcta aaccagcttc tactcagcag ccgtaccagg atctgctgca aacccctgcg
     4801 cacacgaccg cgcagtcgaa gccgcagcaa gctgcaccgg ttgctcgtgc cgctgacgcg
     4861 ccaaaaccga cggcggagaa aaaagacgaa cgccgctgga tggtgcagtg cggttcgttc
     4921 agaggcgcgg aacaggcaga gacggtacgt gctcagctgg cgttcgaagg atttgactcg
     4981 aaaatcacca ccaacaatgg ctggaatcgt gtggtcattg gcccggtgaa aggcaaagag
     5041 aacgcagaca gcaccctcaa tcggttgaag atggcgggtc atacaaactg cattcggctc
     5101 gccgccgggg gttgaaaccc tcaaaatccc ccccatctat aattgcatta tgcctcgtac
     5161 ttttgtacgg ggtttgtact ctgtattcgt aaccaagggg tcagctcgtg acaactatag
     5221 taagcgtacg ccgtaacggc catgtggtca tcgctggtga tggtcaggcc acgttgggca
     5281 ataccgtaat gaaaggcaac gtgaaaaagg tccgccgtct gtacaacgac aaagtcatcg
     5341 cgggctttgc gggcggtact gcggatgctt ttacgctgtt cgaactgttt gaacgtaaac
     5401 tggaaatgca tcagggccat ctggttaaag ccgccgttga gctggcaaaa gactggcgta
     5461 ccgatcgcat gctgcgcaaa cttgaagcac tgctggcagt cgcggatgaa actgcatcgc
     5521 ttatcatcac cggtaacggt gacgtggtgc agccagaaaa cgatcttatt gctatcggct
     5581 ccggcggccc ttacgcccag gctgcggcgc gcgcgctgtt agaaaacact gaacttagcg
     5641 cccgtgaaat tgctgaaaag gcgttggata ttgcaggcga catttgcatc tataccaacc
     5701 atttccacac catcgaagaa ttaagctaca aagcgtaagg atctcccatg tctgaaatga
     5761 ccccacgcga aatcgtcagc gaactggata agcacatcat cggccaggac aacgccaagc
     5821 gttctgtggc gattgctctg cgtaaccgct ggcgtcgcat gcagctcaac gaagagctgc
     5881 gccatgaagt gaccccgaaa aatatcctga tgatcggccc gaccggtgtc ggtaaaactg
     5941 aaatcgcccg tcgtctggct aagctggcga atgcgccgtt catcaaagtt gaagcgacca
     6001 aattcaccga agtgggctat gtcggtaagg aagtggattc tattattcgc gatctgaccg
     6061 atgccgccgt gaaaatggta cgcgtccagg ctatcgagaa aaaccgttat cgcgctgaag
     6121 aactggcaga agaacgtatt ctcgacgtgc tgatcccacc tgctaaaaac aactggggac
     6181 agaccgaaca gcagcaggaa ccgtccgctg ctcgtcaggc attccgcaaa aaactgcgtg
     6241 aaggccagct tgatgacaaa gaaatcgaga tcgatcttgc cgcagcaccg atgggcgttg
     6301 aaattatggc tcctccaggc atggaagaga tgaccagcca gctgcagtcc atgttccaga
     6361 acctgggcgg ccagaagcaa aaagcgcgta agctgaaaat caaagacgcc atgaagctgc
     6421 tgattgaaga agaagcggcg aaactggtga acccggaaga gctgaagcaa gacgctatcg
     6481 acgctgttga gcagcacggg atcgtgttta tcgacgaaat cgacaaaatc tgtaagcgcg
     6541 gcgagtcttc cggtccggat gtttctcgtg aaggcgttca gcgtgacctg ctgccgctgg
     6601 tagaaggttg caccgtttcc accaaacacg ggatggtcaa aactgaccac attctgttta
     6661 tcgcttctgg cgcgttccag attgcgaaac cgtctgacct aatcccggaa ctgcaaggtc
     6721 gtctgccaat ccgcgttgaa ctgcaggcac tgaccaccag cgacttcgag cgtattctga
     6781 ccgagccgaa tgcctctatc accgtgcagt acaaagcact gatggcgact gaaggcgtaa
     6841 atatcgagtt taccgactcc ggtattaaac gcatcgcgga agcggcatgg caggtgaacg
     6901 aatctaccga aaacatcggt gctcgtcgtt tacacactgt tctggagcgt ttaatggaag
     6961 agatttccta cgacgccagc gatttaagcg gtcaaaatat cactattgac gcagattatg
     7021 tgagcaaaca tctggatgcg ttggtggcag atgaagatct gagccgtttt atcctataat
     7081 cgcgttcaat cattttcatc attgtttgat ggggctgaaa ggccccattt ttattggcgc
     7141 gtattatgac tgaacaacaa attagccgaa ctcaggcgtg gctggaaagt ttacgaccta
     7201 aaaccctccc cctcgccttt gctgcaatta tcgtcgggac ggcgctggca tggtggcaag
     7261 gtcattttga tccgctggtc gccctgctgg cactgattac cgccgggcta ttacagatcc
     7321 tttctaacct cgccaatgat tacggcgatg cggtaaaagg cagcgataga cctgaccgca
     7381 ttgggccgct acgcggcatg caaaaagggg tcattaccca gcaagagatg aaacgggcgc
     7441 tcattattac cgtcgtgctc atctgtctct ccgggctggc actggttgca gtggcgtgcc
     7501 atacgctggc tgattttgtc ggtttcctga ttcttggcgg gttgtcgatc attgccgcta
     7561 tcacctacac cgtgggcaat cgtccttatg gttatatcgg tctgggggat atttccgtac
     7621 tggttttctt tggctggtta agcgtcatgg ggagctggta tttacaggct catacattga
     7681 ttccggcact gatccttccg gcgaccgcat gcggcctgct ggcaacggca gtactgaaca
     7741 ttaataacct gcgtgatatc aatagcgacc gagaaaacgg caaaaacacg ctggtggtgc
     7801 gcttaggtga agtgaacgcg cgtcgttatc atgcctgcct gctgatgggc tctctggtat
     7861 gtctggcgct gtttaatctc ttttcgctgc atagcctgtg gggctggctg ttcctgctgg
     7921 cggcaccgtt gctggtgaag caagcccgtt atgtgatgcg ggaaatggac ccggtggcga
     7981 tgcgaccgat gctggaacgc actgtcaagg gggcgttact gactaacctg ctgtttattt
     8041 tagggatatt cctaagccag tgggcagcat aactgacaaa tatcaattaa caattgatga
     8101 ttttgccaac agcccacata gcgcgatata ctgaaaattc tcgcagcaac tgaatgttaa
     8161 gcctatgaaa tacgatactt ccgagctttg tgacatctat caagaagatg ttaacgtcgt
     8221 ggaaccgctg ttctccaact ttggcggacg ggcgtcgttt ggcggacaaa taatcacggt
     8281 aaaatgtttc gaggacaacg ggttgctgta cgatctgctc gaacagaatg gccgtggtcg
     8341 tgttcttgtc gtcgatggcg gtggttctgt tcgtcgcgca ctggtcgatg ctgaactggc
     8401 gcgtctggca gtacaaaatg aatgggaagg tctggttatt tacggcgcgg tgcgtcaggt
     8461 agatgacctg gaagagttgg atatcggcat ccaggcgatg gcggcaattc cggttggtgc
     8521 cgctggcgaa ggcattggcg aaagcgatgt ccgcgtcaat tttggcggtg taaccttctt
     8581 ctccggcgac catctttatg ccgacaatac cgggattatt ctttcagaag atccgctgga
     8641 tattgaatga taagaaaggc accgcaaggt gccttttttc tgcgttacct gttggcctac
     8701 acagtaaaga aattacgcga aagatgaagc gtaatcagac ctcttccatg cgacccagca
     8761 gggcctgcag acgttcctgc cagccgttct gctgttcttt cagatggttg ttctcacgct
     8821 ccagctcttc gcgctgatgc tgggcatttt gaacttcctg cgacagtgag ttgttttttt
     8881 ctttcagctc ttcgatttcc atctgcaaca gagtgatggt atcaatcgcc tgctgtactt
     8941 ttgcttccag tttctcaaac acttctaatg acattgtcat acctctcctg aattgcaagg
     9001 cgttgatgga taaaaaatcc tcgtcccgat taccggtgac gccttaataa atacgagcgc
     9061 actttagtta gctccgattg tatgaagccg cgccatcgct gtccagcggc acgccttgca
     9121 gattacggtt tgccacactt ttcatccttc tcctggtgac ataatccaca tcaatcgaaa
     9181 atgttaataa atttgttgcg cgaatgatct aacaaacatg catcatgtac aatcagatgg
     9241 aataaatggc gcgataacgc tcattttatg acgaagcaca cacattttaa gttcgatatt
     9301 tctcgttttt gctcgttaac gataagttaa cagcatgcct acaagcatcg tggaggtccg
     9361 tgactttcac gcatacaaca aacattaact cttcaggatc cgattatgag tcaaacatca
     9421 accttgaaag gccagtgcat tgctgaattc ctcggtaccg ggttgttgat ttttttcggt
     9481 gtgggttgcg ttgcagcact aaaagtcgct ggtgcgtctt ttggtcagtg ggaaatcagt
     9541 gtcatttggg gactgggggt ggcaatggct atctacctga ccgcaggggt ttccggcgcg
     9601 catcttaatc ccgctgttac cattgcattg tggctgtttg cctgtttcga caagcgcaaa
     9661 gttattcctt ttatcgtttc acaagttgcc ggcgctttct gtgctgcggc tttagtttac
     9721 gggctttact acaatttatt tttcgacttc gagcagactc atcacattgt tcgcggcagc
     9781 gttgaaagtg ttgatctggc aggcactttc tctacttacc ctaatcctca tatcaatttt
     9841 gtgcaggctt tcgcagttga gatggtgatt accgctattc tgatggggct gatcctggcg
     9901 ttaacggacg atggcaacgg tgtaccacgc ggccctttgg ctcccttgct gattggtcta
     9961 ctgattgcgg tcattggcgc atctatgggc ccattgacgg gttttgccat gaacccagcg
    10021 cgtgacttcg gtccgaaagt ctttgcctgg ctggcgggct ggggcaatgt cgcctttacc
    10081 ggcggcagag acattcctta cttcctggtg ccgctttttg gccctatcgt tggcgcgatt
    10141 gtaggtgcat ttgcctaccg caaactgatt ggtcgccatt tgccttgcga tatctgtgtt
    10201 gtgaaagaaa aggaaaccac aactccttca gaacaaaaag cttcgctgta atatgactac
    10261 gggacaatta aacatgactg aaaaaaaata tatcgttgcg ctcgaccagg gcaccaccag
    10321 ctcccgcgcg gtcgtaatgg atcacgatgc caatatcatt agcgtgtcgc agcgcgaatt
    10381 tgagcaaatc tacccaaaac caggttgggt agaacacgac ccaatggaaa tctgggccac
    10441 ccaaagctcc acgctggtag aagtgctggc gaaagccgat atcagttccg atcaaattgc
    10501 agctatcggt attacgaacc agcgtgaaac cactattgtc tgggaaaaag aaaccggcaa
    10561 gcctatctat aacgccattg tctggcagtg ccgtcgtacc gcagaaatct gcgagcattt
    10621 aaaacgtgac ggtttagaag attatatccg cagcaatacc ggtctggtga ttgacccgta
    10681 cttttctggc accaaagtga agtggatcct cgaccatgtg gaaggctctc gcgagcgtgc
    10741 acgtcgtggt gaattgctgt ttggtacggt tgatacgtgg cttatctgga aaatgactca
    10801 gggccgtgtc catgtgaccg attacaccaa cgcctctcgt accatgttgt tcaacatcca
    10861 taccctggac tgggacgaca aaatgctgga agtgctggat attccgcgcg agatgctgcc
    10921 agaagtgcgt cgttcttccg aagtatacgg tcagactaac attggcggca aaggcggcac
    10981 gcgtattcca atctccggga tcgccggtga ccagcaggcc gcgctgtttg gtcagttgtg
    11041 cgtgaaagaa gggatggcga agaacaccta tggcactggc tgctttatgc tgatgaacac
    11101 tggcgagaaa gcggtgaaat cagaaaacgg cctgctgacc accatcgcct gcggcccgac
    11161 tggcgaagtg aactatgcgt tggaaggtgc ggtgtttatg gcaggcgcat ccattcagtg
    11221 gctgcgcgat gagatgaagt tgattaacga cgcctacgat tccgaatatt tcgccaccaa
    11281 agtgcaaaac accaatggtg tgtatgtggt tccggcattt accgggctgg gtgcgccgta
    11341 ctgggacccg tatgcgcgcg gggcgatttt cggtctaact cgtggggtga acgctaacca
    11401 cattatacgc gcgacgctgg agtctattgc ttatcagacg cgtgacgtgc tggaagcgat
    11461 gcaggccgac tctggtatcc gtctgcacgc cctgcgcgtg gatggtggcg cagtagcaaa
    11521 caatttcctg atgcagttcc agtccgatat tctcggcacc cgcgttgagc gcccggaagt
    11581 gcgcgaagtc accgcattgg gtgcggccta tctcgcaggc ctggcggttg gcttctggca
    11641 gaacctcgac gagctgcaag agaaagcggt gattgagcgc gagttccgtc caggcatcga
    11701 aaccactgag cgtaattacc gttacgcagg ctggaaaaaa gcggtcaaac gcgcgatggc
    11761 gtgggaagaa cacgacgagt aatgtaaatg ccggatgaag cgtttatgcc gcatccggta
    11821 gtcctgaaac gtgcgggggc aaccccgcac acatcaataa tcccaccctt cccctgtgct
    11881 acacttcgcg ccattcctta ctgcttagag tttgctatga gacgagaact tgccatcgaa
    11941 ttttcccgcg tcaccgaatc tgcggcgctg gctggctaca aatggttagg acgcggcgat
    12001 aaaaacaccg cggacggcgc ggcggtaaac gccatgcgta ttatgctcaa ccaggtcaac
    12061 attgacggca ccatcgtcat tggtgaaggt gaaatcgacg aagcaccgat gctctacatt
    12121 ggtgaaaaag tcggtactgg tcgcggcgac gcggtagata ttgctgttga tccgattgaa
    12181 ggcacgcgca tgacggcgat gggccaggct aacgcgctgg cggtgctggc agtaggcgat
    12241 aaaggctgct tcctcaatgc gccggatatg tatatggaga agctgattgt cgggccggga
    12301 gccaaaggca ccattgatct gaacctgccg ctggcggata acctgcgcaa tgtagcggcg
    12361 gtgctcggca aaccgttgag cgaactgacg gtaacgattc tagctaaacc acgccacgat
    12421 gccgttatcg ctgaaatgca gcaactcggc gtacgcgtat ttgctattcc ggatggcgac
    12481 gttgcggcct caattctcac ctgtatgcca gacagcgaag ttgacgtgct gtacggtatt
    12541 ggtggcgcgc cggaaggcgt agtttctgcg gcggtgatcc gcgcattaga tggcgacatg
    12601 aacggtcgtc tgctggcgcg tcatgacgtc aaaggcgaca acgaagagaa tcgtcgcatt
    12661 ggcgagcagg agctggcacg ctgcaaagcg atgggcatcg aagccggtaa agtattgcgc
    12721 ctgggcgata tggcgcgcag cgataacgtc atcttctctg ccaccggtat taccaaaggc
    12781 gatctgctgg aaggcattag ccgcaaaggc aatatcgcga ctaccgaaac gctgctgatc
    12841 cgcggcaagt cacgcaccat tcgccgcatt cagtccatcc actatctgga tcgcaaagac
    12901 ccggaaatgc aggtgcacat cctctgattg atttgatcga ttgagccttc cagtccttcg
    12961 ggactggaat ttttttgttc ggagaacgaa gataaggcaa gtcaatcaaa acaggagaaa
    13021 aacatggctg attgggtaac aggcaaagtc actaaagtgc agaactggac cgacgccctg
    13081 tttagtctca ccgttcacgc ccccgtgctt ccgtttaccg ccgggcaatt caccaagctt
    13141 ggccttgaaa tcgacggcga acgcgtccag cgcgcctact cctatgttaa ctcgcccgat
    13201 aatcccgatc tggagtttta cctggtcacc gtccccgatg gcaaattaag cccacgattg
    13261 gcggcactga aaccaggcga tgaagtgcag gtggttagcg aagcagctgg cttctttgtt
    13321 ctggatgaag taccagattg cgaaacgcta tggatgctgg caaccggtac agcgattggc
    13381 ccttatttat cgattctgca actaggcaaa gatttagatc gcttcaaaaa tctggtcctg
    13441 gttcacgccg cacgttatgc cgccgactta agctatttgc cactgatgca agaactggaa
    13501 aaacgctacg aaggcaaact gcgcattcag acggtggtca gtcgggaaac ggcagcgggg
    13561 tcgctcaccg gacggatacc ggcattaatt gaaagtgggg aactggaaag cgcgattggc
    13621 ctgccgatga ataaagaaac cagccatgtg atgctgtgcg gcaatccaca gatggtgcgc
    13681 gatacacaac agttgctgaa agagacccgg cagatgacga aacatttacg tcgccgaccg
    13741 ggccatatga cagcggagca ttactggtaa gcggttactt atcgataaac ggcacgatga
    13801 gcaaatccgc actcatctta ttgatcatcc cgcgatatgc tggcatcaaa cggttgataa
    13861 atgagtgatg atgaccacag acaaggaggt cgcactgctc tttttgcata atttccagca
    13921 gtgtttccgg catttctccg cgttcaatac gcagttttgt cttcggccat tgaatatttt
    13981 tcgtcagttt atacagcttg ttatccgact tattcttcaa caattgaaga atatcttctg
    14041 ttgcagggaa gtagataccc ggatacaact cgcttaagcc atcatcaata tgaattaacg
    14101 tcaggtgagc gtcattatgt ctggcgagct ccagagcttt attcaccagt aaggcatctt
    14161 cttcattccc ggaaattgcc acgccaatgt gtttataagc catgtttaac tccttctaaa
    14221 gcaactccat caagctaacg aacgcagtga taactcaaaa ataatcatct cggcctggca
    14281 tgagaaagtg aaggccgcat caagctcaac ttgcccctcc agatccttaa tcttgtaggc
    14341 cacgctggcc ccttcatctg cagaggatgc agcggcggca agctctttca gtttggtcat
    14401 aaaagactct gcttcttcgc gggtggcaaa aaagcgcgaa aacttactgg tacagttgtc
    14461 gttatcaatc accgtaccga tatcaatcgc acatccttta gtactgcatt tatctacgac
    14521 atctttcata gggcacctct gtatattcgc ctctctgtcg attacgactt aagaataatg
    14581 cgccgttaag ggaagaacaa acaagtaatg atcttatgga ttaccatttt ttttgatatt
    14641 gcttaaggtg aagagttcag aaggattttc cgggtattgt catttgcatc gtggaaataa
    14701 caatcccgga aaaaaatagc agtaagagat atattaaagg ttaattactt gatttattgt
    14761 cggctttata cttcacatcc tgagtatctt taccatattt attttcgcct tgtgtgccaa
    14821 caaacgcacc aagatcgata agcatcatca ccagaatcaa cgtcgggaca aaacacccca
    14881 ccgcccattg ccagacaccc ggtaaaatcg cccagttacc cgccagcagc atccacgcca
    14941 caatcatcag aaatgcccat gcgccggaac gcccgcgatc atgcaagcgc ttaacagtta
    15001 ctgccgctgt tggccaaagc aagcacacaa ggcaaaacgc cgcggtctga atatcgagta
    15061 aatttttacc cgccagtgag aaaagcacca gcatgcctgc gaaccacagg cctatccaaa
    15121 tccagaaatc acggcgtcca atacgccctt taaatgagaa taaccattgc tgtatggtca
    15181 tgtaagttcc ttgatggttg tcttttccag gattctaccc ttttgacaag ggcgacagat
    15241 atcgttttaa tcggagccag tcataacaaa aggtactgtc aatgaagcca gggtgtacgc
    15301 tgttttttct cttatgttct gcattaaccg ttacaacaac ggcgcatgca caaacaccag
    15361 atacggcaac gaccgcgcct tatctgctgg ctggagcccc tactttcgat ctctccatca
    15421 gccagtttcg agaagacttt aacagccaga atcctagcct gccactgaac gaatttcgtg
    15481 ccatcgacag cagtcccgac aaagccaatc tcactcgtgc tgcaagtaaa attaacgaga
    15541 acttgtatgc ttctacagcg ctggagcgcg gtaccttaaa aatcaaaagc attcaaatga
    15601 cctggctacc catccagggg ccagagcaaa aagcagcgaa agcgaaagct caggaataca
    15661 tggcagcagt gatccgcaca ctcaccccat taatgaccaa aacacaaagc cagaaaaaac
    15721 tgcagtcgct gctaacggcg gggaaaaaca aacgttatta caccgagaca gaaggtgcac
    15781 tgcgttatgt tgtcgcggac aacggcgaaa aggggctgac cttcgctgtt gaaccgatta
    15841 agctggcgct atctgaatcg cttgaaggtt tgaataaatg acaaaaagca aagcctttgt
    15901 gccgatgaat ctctatactg tttcacagac ctgctgccct gcggggcggc catcttcctt
    15961 tattcgctta taagcgtgga gaattaaaat gcgacatcct ttagtgatgg gtaactggaa
    16021 actgaacggc agccgccaca tggttcacga gctggtttct aacctgcgta aagagctggc
    16081 aggtgttgct ggctgtgcgg ttgcaatcgc accaccggaa atgtacatcg atatggcgaa
    16141 gcgcgaagct gaaggcagcc acatcatgct gggtgcgcaa aacgtggacc tgaacctgtc
    16201 cggcgcattc accggtgaaa cctctgctgc tatgctgaaa gacatcggcg cacagtacat
    16261 catcatcggc cactctgaac gtcgtactta ccacaaagag tctgacgaac tgatcgcgaa
    16321 aaaattcgcg gtgctgaaag agcagggtct gactccggtt ctgtgcatcg gtgaaaccga
    16381 agctgaaaac gaagcgggca aaactgaaga agtttgcgca cgtcagatcg acgcggtact
    16441 gaaaactcag ggtgctgcgg cattcgaagg tgcggttatc gcttacgaac ctgtatgggc
    16501 aatcggtact ggcaaatctg caactccggc tcaggcacag gctgttcaca aattcatccg
    16561 tgaccacatc gctaaagttg acgctaacat cgctgaacaa gtgatcattc agtacggcgg
    16621 ctctgtaaac gcgtctaacg ctgcagaact gtttgctcag ccagacatcg acggcgcgct
    16681 ggttggcggt gcgtctctga aagctgacgc tttcgcagta atcgttaaag ctgcagaagc
    16741 ggctaaacag gcttaagtct gacaggtgcc ggatttcata tccggcactt actttcctta
    16801 actcttcgcc ttaacgcaaa atctcacact gatgatcctg aatttcctcg gctgaagcac
    16861 ggttaagcgt cagtagattt cgttgtgtcg ccagcaatac aaatgagtta tcactctgcc
    16921 gtaccatcgc cagcccgtag cttcccatat gttcccgcgc ctcaggtact tcttctgcca
    16981 gcatcataaa tgggctgcgt tgtaccagtt cgctttccgt tacccgacgc gccaggtatt
    17041 catgcccgcg caaaccacct ggcagtggca accagcggct gctgatgttc gccagattgt
    17101 tatccagttg ttcgcgcaca tcaggacgaa tacaagagat atgaatatga aaatggtttt
    17161 gcgtacgccc ggtgcgggag ttgatcgcca aagaaaccgc gcgatcggga accggctggc
    17221 cgtacttttt gctcataaaa tcacgcgcct gccaggccaa ccaaaagaag ttcggcgttg
    17281 aaggatcggt caacaaagga ctttcagtac cgttaatacg atacgttggc atcaacagat
    17341 attgcagtgg gccattaaga tcttttaaaa ccacgtatcc ggcattgggt ttgacttccg
    17401 cacatggcga aggattttga ttttgctgct gattgggcaa acattcctca aggacaatct
    17461 tacgtaatgt atccgactct tcaccggtta atttccagta accaataccg gcagccacaa
    17521 cggcgataac tatcatcacc aaaaaaagaa gacccgcttt tttcatcttt ttttccctgt
    17581 acctcaaaga gatgcaaggg taacgcaaaa tcgtgacaaa taaaaaaccc ggtcgcgaga
    17641 aaccaccggg tttgataatt atcctgggga aatcagcgtt tgctgatctg atcgaacgta
    17701 ccgccgttag caaaatgctc tttttgcgct ttcgtccagc cgccgaactc ttcatcaatg
    17761 gtgaataact tcagctttgg aaacgcattt tcgtactttt tcgctacttc agcgtcgcgc
    17821 ggacggtagt agtttttcgc ggcaatttcc tgaccttctg gcgagtagag atatttcagg
    17881 taggcttccg ccacctcttt ggtgcctttt ttctcgacca ctttatcgac caccgacacg
    17941 gttggctctg cgaggataga ctcactcggc gtgacgattt cgaatttatc tttccccagt
    18001 tcattcgctg ccagcagagc ttcgttttcc caggcgatca gtacatcgcc aatcccgcgc
    18061 tcgacaaagg tgttagtgga gccgcgcgcg ccagaatcca gaacttcgac gtttttatac
    18121 agtgcccgaa caaaatcctg tgcttttgcc tgatcgttgt tgttgtgatg cagcgcgtag
    18181 ccccaggcag ccaggtagtt ccagcgtgcg ccaccagagc ttttcggatt aggcgtgatc
    18241 accgaaacac ccggtttaat cagatcgttc cagtcatgga tctgcttcgg attgccctta
    18301 cgcaccagga aaacaatggt ggaagtgtac ggtgcggagt tatccggcag acgtttgatc
    18361 cactctttat caatccgccc gcgttccgca attgcgtcca cgtcataggc cagagccagc
    18421 gtgacaacat cagcttcaat accgttgatt accgacgtcg cttgtttacc tgaaccaccg
    18481 tgtgactgac gcatcaccac gttatcacca gtttgctgtt tccagtgggc gctgaatgcc
    18541 ttgttgtact gttcgtacaa ttcgcgcgtt ggatcatatg aaacgttaag aagctgaata
    18601 tcctttgcca taacgctggt tgccgccagc aaaaatgtta accctacgcc ccacttgttc
    18661 atcgcccgac tctcttatgt tgtgttgtga tgagcaaagc gtgccagaag gttaaccaaa
    18721 cattaaagaa taaaaaaaga ttggctataa cttgcgggta tatgttgagg gattaaaaag
    18781 gcggaagaaa tccgcctcat attgctgaca aagtgcgctt tgtccatgcc ggatgcggcg
    18841 cgaacgcctt atccggccta caaaagtttg caaattcaat aaattgcaga attcatgtag
    18901 gcctgataag cgaagcgcat caggcatttt tgcttctgtc atcggtttca ggctaaagga
    18961 atctgccttt ttccgaaatc attaatacag ttttttcgcg cagtccagcc agtcaccttt
    19021 gaacggacgc ttcatgtttt cgatagcgtc gatgatgtcg tggtgaacca gctgttcgtt
    19081 ctggatacct acacaacgac cgccgtaacc tgccagcagc agatcgatag cgtaagcgcc
    19141 catacgggaa gccagaatac ggtcgtaagg caccggagaa ccaccgcgct ggatgtggcc
    19201 cagcacagtt gcgcgggttt cacgacctgt ttctttctcg atgaaatgcg ccagttcgtc
    19261 aacatcacac atatgttcgg taatcgccac gatcgcgtgt tttttacctt tcgcgatacc
    19321 cgctttgatt tcgtttacca ggtcttcacg gctgaattca acttccggaa ccacaacgaa
    19381 ttcacagcca ccggcaatgg ccgcagccaa cgtcagatcg ccacaataac ggcccatcac
    19441 ttccaccacg gaaatacgct ggtgagaaga agaggtgtca cgcagacggt cgatcgcttc
    19501 tacaacggtg ctcagcgcag tgaagaaacc gatagtgtag tcagtgcctt tgatgtcgtt
    19561 gtcgatagtg cccggcagac cgatgcacgg gaagcccatt tcggtcagac gcattgaacc
    19621 catgtaggaa ccgtcaccgc cgataaccac cagcgcgtcg ataccacgtt ttttcaggtt
    19681 ttcgatagcc acggcgcgga tgttctcgtc gcggaattcc gggaaacgcg cagaaccgag
    19741 gaacgtaccg ccacggttga tcatgtcaga cacgctgtaa cggtctagct gtaccatacg
    19801 gtcttcatac agacccagat agccgtcata aatacccatt acttccagac cttctgtcag
    19861 cgcagaacga acaaccccgc gaattgcggc gttcatgcct ggcgcatcac cgccgcttgt
    19921 caacacaccg attttcttaa tcatgactac ctctgaactt tggaatgcaa aatgaaatct
    19981 gttgccggaa gtcttcttgc acatcgaagt gatccaacga atgtgcaaat agtataacaa
    20041 tcacttcctg ctgaattgat tcaggtcagg ccaaatggcg gtattttata cacaaaatgc
    20101 gggtctggct ctcttttata ctgattatga aagcatagac cgtttaccct ccctgggtac
    20161 gacggaacag gggtcctgat ggataattac atccgatccc ggaaaacgcc gtaaaatagc
    20221 ctgctctacc tgatccgcca ccatatgtgc ctgaaccaaa ggcagagagt cttccatttc
    20281 caaatgaatc tgaataaagc gggtcggccc tgactgccgc gtgcgaagat cgtgagcgcc
    20341 gctaacaccc ggccaggaag tcacgatatc aataatttct tgccgttcct catcaggcaa
    20401 tgcgcgatcc agtaatgact gtaccgcctc atatcccatg cgtaacgcgc tatataaaat
    20461 atagatgccg attcccaatg caaacagagc atcggcgcga tgccagccgt accaggacaa
    20521 ccccagcgcc agcagaattg cgccgttcat cataacatca gactggtaat gtagcatatc
    20581 agcccgcacc gcctggcttt gcgtccggcg caccacccaa cgctgaaacg agacaaggat
    20641 aatcgtacaa attagcgcca caattgtcac gataaccccg acgcctggat ctatcatcgg
    20701 tgttggagat atcagatgtt gaatacccgt caaaaacagg aatagtgccg aaccggagat
    20761 aaacatactt tgcgccagcg ccgcgaggga ctctgcttta ccgtgaccaa acgagtgatt
    20821 atcgtcggca ggttgcaggg aatatcgcac caccagtaaa ttcgtcaacg acgcgccgat
    20881 atccaccagc gaatccacca gcgcggcgag aatactcacc gacccggtat accaccatgc
    20941 aaaaatttta atcagcaata gcaacgaagc catcgccgtc gcagcaatcg ccgcccgact
    21001 gaccagccgt ccataagatt gattcataaa tactcccgct atcaactgac gctagtataa
    21061 cggaagcaaa tcatctgcaa tgcattaagc agcaggcaaa ttgaggataa aaaaaacccc
    21121 acatcatgtg ggggaagaca gggatggtgt ctatggcaag gaaaacaggg tttactactg
    21181 ggaacgtgag ttgctactac tcaatagctt caacgatgaa cttttttgcc attgcgtcac
    21241 gtcacgcaac tgctccattc gttgttgatg tttctcgttt aaaaccgctt gctgctccgg
    21301 cgttaacagg cgatacattt ggttgcggac ttttgccatc tcaacctgac gagcaatttg
    21361 ctcattcgcc attttttctg cctgtgcgcg cacagcgttt tcatcaaaat tttctgcggt
    21421 gacaaggcga tgcattgtct ccagttcgct aacattaaca ggaggctgtt cgtgccgggc
    21481 ctgttgcata agatctcgca tctgctgacg ctgatgttcg gttaaactta tgccgtcgaa
    21541 catatggctc tgcgtactgc gctgcgtact gcgctgcgta agttcttcac ccggatgcca
    21601 gttatcgcct gaaccgactt cagcagcgtg gcttaatgaa ctgactgcca gcgttgaagc
    21661 catgacggca gcggtaacta tgcgcatcat ttgctcccaa aatctttctg tcgcgattca
    21721 acgatagaga gtttacgatt caggctgcaa acatgcgtca gggggtgtaa aacaacgtaa
    21781 agtcatggat tagcgacgtc tgatgacgta atttctgcct cggaggtatt taaacaatga
    21841 ataaaatcct gttagttgat gatgaccgag agctgacttc cctattaaag gagctgctcg
    21901 agatggaagg cttcaacgtg attgttgccc acgatgggga acaggcgctt gatcttctgg
    21961 acgacagcat tgatttactt ttgcttgacg taatgatgcc gaagaaaaat ggtatcgaca
    22021 cattaaaagc acttcgccag acacaccaga cgcctgtcat tatgttgacg gcgcgcggca
    22081 gtgaacttga tcgcgttctc ggccttgagc tgggcgcaga tgactatctc ccgaaaccgt
    22141 ttaatgatcg tgagctggtg gcacgtattc gcgcgatcct gcgccgttcg cactggagcg
    22201 agcaacagca aaacaacgac aacggttcac cgacactgga agttgatgcc ttagtgctga
    22261 atccaggccg tcaggaagcc agcttcgacg ggcaaacgct ggagttaacc ggtactgagt
    22321 ttaccctgct ctatttgctg gcacagcatc tgggtcaggt ggtttcccgt gaacatttaa
    22381 gccaggaagt gttgggcaaa cgcctgacgc ctttcgaccg cgctattgat atgcacattt
    22441 ccaacctgcg tcgtaaactg ccggatcgta aagatggtca cccgtggttt aaaaccttgc
    22501 gtggtcgcgg ctatctgatg gtttctgctt catgataggc agcttaaccg cgcgcatctt
    22561 cgccatcttc tggctgacgc tggcgctggt gttgatgttg gttttgatgt tacccaagct
    22621 cgattcacgc cagatgaccg agcttctgga tagcgaacag cgtcaggggc tgatgattga
    22681 gcagcatgtc gaagcggagc tggcgaacga tccgcccaac gatttaatgt ggtggcggcg
    22741 tctgttccgg gcgattgata agtgggcacc gccaggacag cgtttgttat tggtgaccac
    22801 cgaaggccgc gtgatcggcg ctgaacgcag cgaaatgcag atcattcgta actttattgg
    22861 tcaggccgat aacgccgatc atccgcagaa gaaaaagtat ggccgcgtgg aactggtcgg
    22921 tccgttctcc gtgcgtgatg gcgaagataa ttaccaactt tatctgattc gtccggccag
    22981 cagttctcaa tccgatttca ttaacttact gtttgaccgc ccgctattac tgctgattgt
    23041 caccatgttg gtcagtacgc cgctgctgtt gtggttggcc tggagtctgg caaaaccggc
    23101 gcgtaagctg aaaaacgctg ccgatgaagt tgcccaggga aacttacgcc agcacccgga
    23161 actggaagcg gggccacagg aattccttgc cgcaggtgcc agttttaacc agatggtcac
    23221 cgcgctggag cgcatgatga cctctcagca gcgtctgctt tctgatatct ctcacgagct
    23281 gcgcaccccg ctgacgcgtc tgcaactggg tacggcatta ctgcgccgtc gtagcggtga
    23341 aagcaaggaa ctggagcgta ttgaaaccga agcgcaacgt ctggacagca tgatcaacga
    23401 tctgttggtg atgtcacgta atcagcaaaa aaacgcgctg gttagcgaaa ccatcaaagc
    23461 caaccagttg tggagtgaag tgctggataa cgcggcgttc gaagccgagc aaatgggcaa
    23521 gtcgttgaca gttaacttcc cgcctgggcc gtggccgctg tacggcaatc cgaacgccct
    23581 ggaaagtgcg ctggaaaaca ttgttcgtaa tgctctgcgt tattcccata cgaagattga
    23641 agtgggcttt gcggtagata aagacggtat caccattacg gtggacgacg atggtcctgg
    23701 cgttagcccg gaagatcgcg aacagatttt ccgtccgttc tatcggaccg atgaagcacg
    23761 cgatcgtgaa tctggcggta caggattggg gctggcgatt gttgaaaccg ccattcagca
    23821 gcatcgtggc tgggtgaagg cagaagacag cccgctgggc ggtttacggc tggtgatttg
    23881 gttgccgctg tataagcgga gttaaactcc gcatttgtag gcaggataag gcgtttacgc
    23941 cgcatccggc atttgagcag gatgcctgat gcgacgctga tagcgtctta tcaggcctac
    24001 actccggggg ttattttccc cacaaccggc gggaaaaatc ttcgatcttg ccgctcagtc
    24061 ggcgcttttg catcgtccgc gtccagcttt tcgataaccc ggcggcggag agtaaacggt
    24121 gatactgatc gtcatcaaac ggcatatgcc atgcgatggc ggcagcctcc tgcacggtca
    24181 catcgctgac acgggaaacc aactccagcg gcgcgtccgc agacactttc cctggcgcta
    24241 tcacgctata caaccacccc accttacctg tgttttgcat caactgcgct atatcgctga
    24301 tatcaaaatg gtaattgagt ttatagcaag gcgagcgcgg ctggctgacc tgaattaatg
    24361 cctctcccca gcggaaaata tcgcccatat aaacattact ttccgtcagg ccgtcggttg
    24421 agaggttttc accaaacgca ggcgcaacaa acaactccgc ctgttccgga aattcccgcg
    24481 cccagtagag ataatgctca cgaggataat gacacagcgc tctgtctggc ccaccatgaa
    24541 cctttttctc cgcctgctcg tcaccttcca gccccagctc cgtcagcatc aactcaccat
    24601 caacctggat tttggcaatt gcgctgggtt tgccttcggg ataagcctga atcttgcctg
    24661 tgtatacatc aaccggatat cgcatctgtt ccctctccac gagaaatttc cccattagac
    24721 catatttatt ttatgtcagg cgtgctgttt tcgcggtaag tatccaggca ggaactcaat
    24781 agcaaaccgg acgaacgtta gttcatccgg ctgtggggat taaggaagca ggtttatttc
    24841 accgtaccta aaatttcgat tttcgctgct ctggctttga ctttacgtga ccagatagag
    24901 gtaagaattg gcaccagaat cgaagtcaca atgaccgccg tcgctaccag cgaagttgct
    24961 gccggagcca tcggtttaaa cgcaggcacc atttctgcaa tcagcatagg tgtcgctacc
    25021 gcggcccctg cggaactgga agcggcaatt ccggcagtgc catcgccacc gccaatcaat
    25081 ttatcggcga taatcaacgg aataccggtc acgataatta ctgccacacc caacaggatc
    25141 cccagcaaac cagtctgggc aatcacagtc aaatcaatgg tattgcccag cgcgaaggca
    25201 aagaatggaa tcagcgtttg caccgctttg ctgaaaaatt ctcgtaattc agggtcaagg
    25261 ttccccaggg caaagcccac caggaacggt aatactgcgc cgacgaaaac atgcggttca
    25321 aacgaggcaa tccctgcagt gcccagaata atcatcgtca tgagcggccc ggactccaac
    25381 gacatcaaca caaatgcccc agcttcttct tttgtgccgt actgctgcat gatggaagcg
    25441 taaagtccgc cattggtcat atccatcgcc gccaccagcg ccagcgttga aagtccggca
    25501 aagaatccaa cttcaacacc atgttccgga ataatgcgcg aggcaattgc cgcaaccacc
    25561 cacgcgacgg caatttttgt taccaccagc gtaccggatt tacgcaatac cgttcccgtc
    25621 gcgcttaatt ttattgacgc ccccatgcaa aaaaaccaca ccgccagaat ggacaccgta
    25681 ccggtaatca tcccgttggt gaatgatcca aaatatttcc ccgcccccgg cgagaaggtg
    25741 tggcacagtg cgccaaggaa tagcgggacg agcatcatcc ccccccggga ttttctcaat
    25801 cgagcgtttt atctgcattt ccatcacctg tcggcatatt tttaagggct gatgcgtaat
    25861 tcctcaatgg agcatcagtg ttgatggaaa cgaagataga cattcattta atcaataaaa
    25921 gtgatcaaaa ccacatcaat tgaaacgctg ttttattttt atcggatcat tgtttttatt
    25981 ttgaaattga tcacaaaaaa accaccgccg ttggcgatgg ttcatttttt aagctgatat
    26041 gcggcgtaaa cgcctcattg cagcaggcgg caaatgatta ttttttcgcc gcgaaacgtg
    26101 ccgctgcttc atcccagttc accacgttcc agaactcttt gatgtagtcc ggacggcggt
    26161 tctggaattt caggtagtaa gcatgttccc acacatccag gcccagaatc gggaagccgg
    26221 aagcgccaga aatagcttca cccatcagcg gggaatcctg gttagcagta gaaaccaccg
    26281 ccagtttatc gcctttcagc accagccatg cccagccgga accaaagcgg gaagctgccg
    26341 ctttctcaaa ttctgctttg aagttatcaa cggagccgaa gtcacgttcg atagccgctt
    26401 tcaggtcacc ctgtaaggtg gtgccttttt tcagaccttt ccagaacagg ctgtggttag
    26461 cgtgaccgcc agcgttgttg cgcagtacgg ttttcttgtc tgctggcagc tggtccagtt
    26521 tggtgatcag ctcttcaacc ggcaggttgg caaattctgg caggctttcc agcgccgcgt
    26581 tggcgttgtt gacgtaggtc tgatggtgtt tggtgtggtg gatttccatg gtctgcttat
    26641 cgaagtgcgg ttccagggca tcgtaagcat acggcaggga tggcagggta tagctcatat
    26701 tcatctccag tattgtcggg cggccgattg ttaatgcgcg taagcagttg gttcattata
    26761 gttaattaaa tgatattgaa aatgattatc aatgccgtac ttttcgtaag ggtatggttt
    26821 tgcaggaaaa ttcccgagat gtgaagcaaa tcacccactt aatgccgtga ttgccagtaa
    26881 atcgacaacg gcggcaacag gcgaaaggtt aatcgacagc acgattttta cactcatctc
    26941 gtcggagatg tgacgcgacg aaaaatgatg aggataagaa gatgagtaac gcgattacga
    27001 tggggatatt ttggcatttg atcggcgcgg ccagtgcagc ctgtttttac gctccgttca
    27061 aaaaagtaaa aaaatggtca tgggaaacca tgtggtcagt tggtgggatt gtttcgtgga
    27121 ttattctgcc gtgggccatc agcgccctgt tactgccgaa tttctgggcg tattacagct
    27181 cgtttagtct ctctacgctg ctgcctgttt ttctgttcgg cgctatgtgg gggatcggta
    27241 atatcaacta cggcctgacc atgcgttatc tcggcatgtc gatgggaatt ggcatcgcca
    27301 ttggcattac gttgattgtc ggtacgctga tgacgccaat tatcaacggc aatttcgatg
    27361 ttctgcttaa taccgaaggc ggacgcatga cgttgctcgg cgttctggtg gcgctgattg
    27421 gtgtagggat tgtgactcgc gccgggcagt tgaaagagcg caaaatgggc attaaagccg
    27481 aagagttcaa cctgaaaaaa gggctggtgc tggcggtgat gtgcggcatt ttctctgccg
    27541 gtatgtcttt tgcgatgaac gccgcaaaac cgatgcatga agccgctgcc gcactgggcg
    27601 tcgatccact gtatgtcgct ctgccaagct atgtcatcat catgggcggc ggcgcgatca
    27661 tcaacctcgg tttctgcttc attcgtctgg caaaagtgaa ggatttgtcg ctaaaagccg
    27721 acttctcgct ggcaaaaccg ctgatcattc acaatgtgtt actctcagca ctgggcgggt
    27781 tgatgtggta tctgcaattc tttttctatg cctggggcca cgcccgcatt ccggcgcagt
    27841 atgactacat cagttggatg ctgcatatga gtttctatgt attgtgcggc ggtatcgtcg
    27901 ggctggtgct gaaagagtgg aacaatgcag gtcgccgtcc ggtaacggtg ttgagcctcg
    27961 gttgtgtggt gattattgtc gccgccaaca tcgtcggcat cggcatggcg aattaatctt
    28021 tctgcgaatt gagatgacgc cactggctgg gcgtcatccc ggtttcccgg gtaaacacca
    28081 ccgaaaaata gttactatct tcaaagccac attcggtcga aatatcactg attaacaggc
    28141 ggctatgctg gagaagatat tgcgcatgac acactctgac ctgccgcaga tattgattga
    28201 tggtcattcc agtctgctgg cgaaattgct gacgcaaaac gcgctcactg cacgatgcct
    28261 catcacaaaa tttatccagc gcaaagggac ttttcaggct agccgccagc cgggtaatca
    28321 gcttatccag caacgtttcg ctggatgttg gcggcaacga atcactggtg taacgatggc
    28381 gattcagcaa catcaccaac tgcccgaaca gcaactcagc catttcgtta gcaaacgaca
    28441 catgctgact actttcatgc tcaagctgac cgataacctg ccgcgcctgc gccatcccca
    28501 cgctacctaa gcgccagtgt ggttgccctg cgctggcgct aaatcccgga atcgctccct
    28561 gccagtcaag attcagcttc agccgctccg ggcaataaat aatattctgc aaaaccagat
    28621 cgttaacgga agcgtaggag tgtttatcgt cagcatgaat gtaaaagaga tcgccacggg
    28681 taatgcgata agggcgatcg ttgagtacat gcagaccatt accgcgccag acaatcacca
    28741 gctcacaaaa atcatgtgta tgttcggcaa aaacatcttg cggataacgg tcagccacag
    28801 cgactgcctg ctggtcgctg gcaaaaaaat catctttgag aagttttaac tgatgcgcca
    28861 ccgtggctac ctcggccaga gaacgaagtt gattattcgc aatatggcgt acaaatacgt
    28921 tgagaagatt cgcgttattg cagaaagcca tcccgtccct ggcgaatatc acgcggtgac
    28981 cagttaaact ctcggcgaaa aagcgtcgaa aagtggttac tgtcgctgaa tccgcagcga
    29041 taggcgatgt cagtaacgct ggcctcgctg tgacgtagca gatgtcgggc cttcatcagt
    29101 cgcaggcggt tcaggtaacg ctgaggcgtc agtcccgttt gctgcttaag ctgccgatgt
    29161 agcgtacgca gtgaaagaga aaattgatcc gccacggcat cccaattcac ctcatcggca
    29221 aaatggtcct ccagccaggc cagaagcaag ttgagacgtg atgcgctgtt ttccaggttc
    29281 tcctgcaaac tgcttttacg cagcaagagc agtaattgca taaacaagat ctcgcgactg
    29341 gcggtcgagg gtaaatcatt ttccccttcc tgctgttcca tctgtgcaac cagctgtcgc
    29401 acctgctgca atacgctgtg gttaacgcgc cagtgagacg gatactgccc atccagttct
    29461 tgtggcagca actgattcag cccggcgaga aactgaaatc gatccggcga gcgatacagc
    29521 acattggtca gacacagatt atcggtatgt tcatacagat gccgatcatg atcgcgtacg
    29581 aaacagaccg tgccaccggt gatggtatag ggctgcccat taaacacatg aatacccgtg
    29641 ccatgttcga caatcacaat ttcatgaaaa tcatgatgat gttcaggaaa atccgcctgc
    29701 gggagccggg gttctatcgc cacggacgcg ttaccagacg gaaaaaaatc cacactatgt
    29761 aatacggtca tactggcctc ctgatgtcgt caacacggcg aaatagtaat cacgaggtca
    29821 ggttcttacc ttaaattttc gacggaaaac cacgtaaaaa acgtcgattt ttcaagatac
    29881 agcgtgaatt ttcaggaaat gcggtgagca tcacatcacc acaatgaagc aaattgtgaa
    29941 catcatcacg ttcatctttc cctggttgcc aatggcccat tttcctgtca gtaacgagaa
    30001 ggtcacgaat tcaggcgctt tttagactgg tcgtaatgaa attcagcagg atcacattat
    30061 gacctttcgc aattgtgtcg ccgtcgatct cggcgcatcc agtgggcgcg tgatgctggc
    30121 gcgttacgag cgtgaatgcc gcagcctgac gctgcgcgaa atccatcgtt ttaacaatgg
    30181 cctgcatagc cagaacggtt atgtcacctg gaatgtggat agcctggaaa gtgccattcg
    30241 ccttggatta aacaaggtgt gcgaggaagg gattcgtatc gatagcattg ggattgatac
    30301 ctggggcgtg gactttgtgc tgctcgacca acagggtcag cgtgtgggcc tgcccgttgc
    30361 ttatcgcgat agccgctcca atggcctaat ggcgcaggca cagcaacaac tcggcaaacg
    30421 cgatatttat caacgtagcg gcatccagtt tctgcccttc aatacgcttt atcaactgcg
    30481 tgcgctgacg gagcaacaac ctgaacttat tccacacatt gctcacgctc tgctgatgcc
    30541 ggattacttc agctatcgcc tgaccggcaa gatgaactgg gaatatacca atgccaccac
    30601 cacacaactg gtcaatatca atagcgacga ctgggacgag tcgctactgg cgtggagcgg
    30661 ggccaacaaa gcctggtttg gtcgcccgac gcatccgggt aatgtcattg ggcactggat
    30721 ttgcccgcag ggtaatgaga ttccggtggt cgccgttgcc agccatgata ccgccagcgc
    30781 ggttatcgcc tcgccgttaa acggttcacg cgctgcttat ctctcttctg gcacctggtc
    30841 attgatgggc ttcgaaagcc agacgccatt taccaatgac acggcgctgg cagccaacat
    30901 aaccaatgaa ggcggggcgg aaggtcgcta tcgggtgctg aaaaatatta tgggcttatg
    30961 gctgcttcag cgagtgcttc aggagcggca aatcaacgat ctcccggcgc ttatcgccgc
    31021 gacacaggca cttccggcct gccgcttcat catcaatccc aatgacgatc gctttattaa
    31081 tcctgaggcg atgtgcagcg aaattcaggc tgcgtgtcgg gaaacggcgc aaccgatccc
    31141 ggaaagtgat gctgaactgg cgcagctacg cggtgaagat ttctcgcaac tgcatattgt
    31201 cggcggcggc tgccagaaca cgctgctcaa ccagctatgt gccgatgcct gcggtattcg
    31261 ggtgatcgcc gggcctgttg aagcctcgac gctcggcaat atcggcatcc agttaatgac
    31321 gctggatgaa ctcaacaatg tggatgattt ccgtcaggtc gtcagcacca ccgcgaatct
    31381 gaccaccttt acccctaatc ctgacagtga aattgcccac tatgtggcgc agcttcactc
    31441 tacacgacag acaaaggagc tttgcgcatg accactcaac tggaacaggc ctgggagctg
    31501 gcgaaacagc gtttcgcggc ggtggggatt gatgtcgagg aggcgctgcg ccaacttgat
    31561 cgtttacccg tttcaatgca ctgctggcag ggcgatgatg tttccggttt tgaaaacccg
    31621 gaaggttcgc tgaccggggg gattcaggcc acaggcaatt atccgggcaa agcgcgtaat
    31681 gccagtgagc tacgtgccga tctggaacag gctatgcggc tgattccggg gccgaaacgg
    31741 cttaatttcc atgccatcta tctggaatca gatacgccag tctcgcgcga ccagatcaaa
    31801 ccagagcact tcaaaaactg gggtgaatgg gcgaaagcca atcagctcgg tctggatttt
    31861 aacccctcct gcttttcgca tccgctaagc gccgatggct ttacgctctc gcatcccgac
    31921 gacagcattc gccagttctg gattgatcac tgcaaagcca gccgtcgcgt ttcggcctat
    31981 tttggcgagc aactcggcac accatcggtg atgaacatct ggatcccgga tggtatgaaa
    32041 gatatcaccg ttgaccgtct cgccccgcgt cagcgtctgc tggcagcact ggatgaggtg
    32101 atcagcaaga agctaaaccc tgcgcaccat atcgacgccg ttgagagcaa attgtttggc
    32161 attggcgcag agagctacac ggttggctcc aatgagtttt acatggggta tgccaccagc
    32221 cgccagactg cgctgtgcct agacgccggg cacttccacc cgactgaagt gatttccgac
    32281 aagatttccg ccgccatgct gtatgtgccg cagttgctgc tgcacgtcag ccgtccggtt
    32341 cgctgggact gcgatcacgt agtgctgctg gatgatgaaa cccaggcaat tgccagtgag
    32401 attgtgcgtc acgatctgtt tgaccgggtg catatcggcc ttgacttctt cgatgcctct
    32461 atcaaccgca ttgccgcgtg ggtcattggt acacgcaata tgaaaaaagc cctgctgcgt
    32521 gcgttgctgg aacctaccgc tgagctgcgc aagctggaag cggcgggcga ttacactgcg
    32581 cgtctggcac tgctggaaga gcagaaatcg ttgccgtggc aggcggtctg ggaaatgtat
    32641 tgccaacgtc acgatacgcc agcaggtagc gaatggctgg agagcgtgcg ggcttatgaa
    32701 aaagaaattt tgagccagcg tgggtaaaca ctgccggatg cggcgcgagc gccttatccg
    32761 gcctacgggt cgtgcatctg acaacaccga atttacagga acacagaaca tgcaaaacat
    32821 tacccagtcc tggtttgtcc agggaatgat caaagccacc accgatgcct ggctgaaagg
    32881 ctgggacgaa cgcaacggcg gcaacctgac gctgcgcctg gatgacgccg atatcgcgcc
    32941 ttataaagac aacgtccatg cacaaccgcg ctatatcccg ctcagccagc ccatgccttt
    33001 actggcaaat acaccgttta ttgtcaccgg ctccggcaaa ttcttccgta acgtccagct
    33061 cgatcctgca gctaacttag gcgtcgtaaa agtcgacagc gatggcgcgg gctaccatat
    33121 tctctggggg ttaaccaacg aagccgtccc gacatccgaa ctcccggcgc actttctctc
    33181 ccactgcgag cgcattaaag ccaccaacgg taaagatcgg gtgatcatgc actgccacgc
    33241 caccaacctg atcgccctca cctatgtact ggaaaacgac accgcggtct ttactcgcca
    33301 actgtgggaa ggcagcaccg agtgtctggt ggtattcccg gatggcgttg gcattctgcc
    33361 gtggatggtg cccggcacgg acgaaatcgg ccaggcgacc gcacaagaga tgcaaaaaca
    33421 ttcgctggtg ttgtggccct tccacggcgt cttcggcagc gggtcgacgt tggatgaaac
    33481 attcggttta atcgacaccg cagaaaaatc agcacaagta ttagtgaagg tttattcgat
    33541 gggcggcatg aaacagacca tcagccgtga agagttgata gcgctcggca agcgcttcgg
    33601 cgttacacca ctagccagtg cgctggcgct gtaaggagca aacatgatcc gcaaagcctt
    33661 tgtcatgcag gttaaccccg acgcccacga agagtatcag cgtcggcata accccatctg
    33721 gccggaactg gaagcagtgt tgaaatctca cggtgcgcat aactacgcca tttacctcga
    33781 caaagcgcgt aatctgctgt ttgccacggt agagattgaa tctgaagaac ggtggaatgc
    33841 ggtagccagt actgatgttt gccaacgttg gtggaaatat atgaccgatg ttatgcccgc
    33901 taacccggat aacagcccgg tgagtagcga gctg
//
LOCUS       DADMJB010000025        32956 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.025, whole genome shotgun sequence.
ACCESSION   DADMJB010000025 DADMJB010000000
VERSION     DADMJB010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 32956)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32956)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32956
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.025"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..257
                     /locus_tag="JN078_001085"
     CDS             <1..257
                     /locus_tag="JN078_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="prepilin peptidase-dependent pilin"
                     /protein_id="HAY9040363.1"
                     /translation="LDTCDGGSNGIPSPTTTRYVSAMSVAKGVVSLTGQESLNGLSVV
                     MTPGWDNANGVTGWARNCNIQSDSALQQACEDVFRFDDAN"
     gene            267..1641
                     /gene="gspE"
                     /locus_tag="JN078_001086"
                     /pseudo
     CDS             267..1641
                     /gene="gspE"
                     /locus_tag="JN078_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414649.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspE"
     gene            1631..2833
                     /gene="hofC"
                     /locus_tag="JN078_001087"
     CDS             1631..2833
                     /gene="hofC"
                     /locus_tag="JN078_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein transport protein HofC"
                     /protein_id="HAY9040364.1"
                     /translation="MASKQLWRWHGITGDGNAQDGMLWAESRALLLMALQQQMVTPLS
                     LKRIAINSAQWRGDKSAEVIHQLATLLKAGLTLSEGLALLAGQHPSKQWQALLQSLAH
                     DLEQGIAFSNALLPWSEVFPPLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVK
                     SALRYPIIILAMAIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSW
                     LLVLFGFLLAIANKLLMRRPTWLIVRQKLLLRIPIMGSLMRGQKLTQIFTILALTQSA
                     GITFLQGVESVRETMRCPYWVQLLTQIQHDISNGHPIWLALKNTGEFSPLCLQLVRTG
                     EASGSLDLMLDNLAHHHRDNTMALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHL
                     GDAMSGMG"
     gene            complement(2868..3911)
                     /gene="guaC"
                     /locus_tag="JN078_001088"
     CDS             complement(2868..3911)
                     /gene="guaC"
                     /locus_tag="JN078_001088"
                     /EC_number="1.7.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008461816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP reductase"
                     /protein_id="HAY9040365.1"
                     /translation="MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSDQSW
                     SGVPIIAANMDTVGTFSMASALASFDILTAVHKHYSVEEWQAFINNSSADVLKHVMVS
                     TGTSDADFEKTKQILDLNPALNFVCIDVANGYSEHFVQFVAKAREAWPTKTICAGNVV
                     TGEMCEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIVS
                     DGGCTTPGDVAKAFGGGADFVMLGGMLAGHEESGGRIVEENGEKFMLFYGMSSESAMK
                     RHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFI
                     RVQEQENRIFNNL"
     gene            4136..4756
                     /gene="coaE"
                     /locus_tag="JN078_001089"
     CDS             4136..4756
                     /gene="coaE"
                     /locus_tag="JN078_001089"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HAY9040366.1"
                     /translation="MRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGA
                     PALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQ
                     ATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQA
                     TREARLAVADDVIDNNGAPDAIASDVARLHAHYLQLASQFVSQEKP"
     gene            4756..5499
                     /gene="zapD"
                     /locus_tag="JN078_001090"
     CDS             4756..5499
                     /gene="zapD"
                     /locus_tag="JN078_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapD"
                     /protein_id="HAY9040367.1"
                     /translation="MQTQVLFEHPLNEKMRTWLRIEFLIQQLTVNLPIVDHAGALHFF
                     RNVSELLDVFERGEVRTELLKELDRQQRKLQTWIGVPGVDQSRIEALIQQLKAAGSVL
                     ISAPRIGQFLREDRLIALVRQRLSIPGGCCSFDLPTLHIWLHLPQAQRDSQVETWIAS
                     LNPLTQALTMVLDLIRQSAPFRKQTSLNGFYQDNGGDADLLRLNLSLDSQLYPQISGH
                     KSRFAIRFMPLDSENGQVPERLDFELACC"
     gene            5509..5706
                     /gene="yacG"
                     /locus_tag="JN078_001091"
     CDS             5509..5706
                     /gene="yacG"
                     /locus_tag="JN078_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HAY9040368.1"
                     /translation="MSETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEE
                     KRIPSSGDLSESDDWSEEPKQ"
     gene            complement(5813..6202)
                     /gene="mutT"
                     /locus_tag="JN078_001092"
     CDS             complement(5813..6202)
                     /gene="mutT"
                     /locus_tag="JN078_001092"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase MutT"
                     /protein_id="HAY9040369.1"
                     /translation="MKKLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGE
                     TPEQAVVRELQEEVGITPQHFSLFEKLAYEFPDRHITLWFWLVESWEGVPWGKEGQPG
                     EWMSLVGLNADDFPPANEPVIAKLKRL"
     gene            complement(6262..8967)
                     /gene="secA"
                     /locus_tag="JN078_001093"
     CDS             complement(6262..8967)
                     /gene="secA"
                     /locus_tag="JN078_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HAY9040370.1"
                     /translation="MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELK
                     GKTAEFRARLEKGEVLENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEM
                     RTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPG
                     MPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDE
                     ARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTE
                     RGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVI
                     IVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTG
                     TADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQ
                     PVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAAVTIATNMAG
                     RGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRR
                     IDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVT
                     KAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDVSDVSETINSIRED
                     VFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIAEWLDKEPELHEETLRERIL
                     AQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKD
                     PKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEELEQQRRMEAERLAQMQQ
                     LSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHGRLQ"
     gene            complement(9029..9541)
                     /gene="secM"
                     /locus_tag="JN078_001094"
     CDS             complement(9029..9541)
                     /gene="secM"
                     /locus_tag="JN078_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414639.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secA regulator SecM"
                     /protein_id="HAY9040371.1"
                     /translation="MSGILTRWRQFGKRYFWPHLLLGMVAASLGLPALSNAAEPNVPA
                     KATTRNHEPSAKVNFGQLALLEANTRRPNSNYSVDYWHQYAIRTVIRHLSFAMAPQTL
                     PVAEESLPLQAQHLALLDTLSALLTQEGTPSEKGYRIDYAHFTPQAKFSTPVWISQAQ
                     GIRAGPQRLT"
     gene            complement(9772..10689)
                     /gene="lpxC"
                     /locus_tag="JN078_001095"
     CDS             complement(9772..10689)
                     /gene="lpxC"
                     /locus_tag="JN078_001095"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000595491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HAY9040372.1"
                     /translation="MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDL
                     NPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIP
                     IMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTID
                     FNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVV
                     DDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFIAYKSGHALNNKLLQAVL
                     AKQEAWEYVTFQDDAELPLTFKAPSAVLA"
     gene            complement(10790..11941)
                     /gene="ftsZ"
                     /locus_tag="JN078_001096"
     CDS             complement(10790..11941)
                     /gene="ftsZ"
                     /locus_tag="JN078_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HAY9040373.1"
                     /translation="MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNT
                     DAQALRKTAVGQTIQIGSGITKGLGAGANPEVGRNAADEDRDALRAALEGADMVFIAA
                     GMGGGTGTGAAPVVAEVAKDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSL
                     ITIPNDKLLKVLGRGISLLDAFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMS
                     EMGYAMMGSGVASGEDRAEEAAEMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFE
                     TVGNTIRAFASDNATVVIGTSLDPDMNDELRVTVVATGIGMDKRPEITLVTNKQVQQP
                     VMDRYQQHGMAPLTQEQKPVAKVVNDNAPQTAKEPDYLDIPAFLRKQAD"
     gene            complement(12002..13264)
                     /gene="ftsA"
                     /locus_tag="JN078_001097"
     CDS             complement(12002..13264)
                     /gene="ftsA"
                     /locus_tag="JN078_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017374018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HAY9040374.1"
                     /translation="MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSR
                     GMDKGGVNDLESVVKCVQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEE
                     EVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHL
                     ITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYSVLTEDERELGVCVVDIGGGTMDI
                     AVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVE
                     VPSVGGRPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEKLRQQGVKHHLAAGIVL
                     TGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKESHLN
                     GEAEVEKRVTASVGSWIKRLNSWLRKEF"
     gene            complement(13261..14091)
                     /gene="ftsQ"
                     /locus_tag="JN078_001098"
     CDS             complement(13261..14091)
                     /gene="ftsQ"
                     /locus_tag="JN078_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ"
                     /protein_id="HAY9040375.1"
                     /translation="MSQAALNTRNSEEEVSSRRNNGTRLAGILFLLTVLTTVLVSGWV
                     VLGWMEDAQRLPLSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQR
                     LPWIKQVSVRKQWPDELKIHLVEYVPIARWNDQHMVDAEGNTFSVPPDRTSKQVLPML
                     YGPEGSANEVLQGYREMGQMLAKDRFTLKETAMTARRSWQLTLNNDIKLNLGRGDTMK
                     RLARFVELYPVLQQLAQTDGKRISYVDLRYDSGAAVGWAPLPPEESTQQQNQAQAEQQ
                     "
     gene            complement(14093..15013)
                     /locus_tag="JN078_001099"
     CDS             complement(14093..15013)
                     /locus_tag="JN078_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HAY9040376.1"
                     /translation="MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE
                     VDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL
                     LWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE
                     NALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLS
                     DETQYFCPAGLDASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPG
                     MTSHSLVPMAARQAGMSFSQLVVRILELAD"
     gene            complement(15006..16481)
                     /gene="murC"
                     /locus_tag="JN078_001100"
     CDS             complement(15006..16481)
                     /gene="murC"
                     /locus_tag="JN078_001100"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HAY9040377.1"
                     /translation="MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGY
                     QISGSDLAPNPVTQQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEAR
                     IPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAG
                     VHARLGHGRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFL
                     HNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLR
                     QDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFLGTGRRFDFLGEF
                     PLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYD
                     DFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEML
                     APVLTGNDLILVQGAGNIGKIARSLAEIKLKPQTPEEEQHD"
     gene            complement(16535..17602)
                     /gene="murG"
                     /locus_tag="JN078_001101"
     CDS             complement(16535..17602)
                     /gene="murG"
                     /locus_tag="JN078_001101"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HAY9040378.1"
                     /translation="MSGQGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADR
                     MEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGM
                     GGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGN
                     PVRTDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQS
                     GKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPA
                     LFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERAR
                     AASIPDATERVANEVSRAARA"
     gene            complement(17599..18843)
                     /gene="ftsW"
                     /locus_tag="JN078_001102"
     CDS             complement(17599..18843)
                     /gene="ftsW"
                     /locus_tag="JN078_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsW"
                     /protein_id="HAY9040379.1"
                     /translation="MRLSLPRLKMPRLPGFSILVWISTALKGWVMGSREKDTDSLIMY
                     DRTLLWLTFGLAAIGFIMVTSASMPIGQRLTNDPFFFAKRDGVYLILAFILAIITLRL
                     PMEFWQRYSATMLLGSIILLMIVLVVGSSVKGASRWIDLGLLRIQPAELTKLSLFCYI
                     ANYLVRKGDEVRNNLRGFLKPMGVILVLAVLLLAQPDLGTVVVVFVTTLAMLFLAGAK
                     LWQFIAIIGMGISAVVLLILAEPYRIRRVTAFWNPWEDPFGSGYQLTQSLMAFGRGEL
                     WGQGLGNSVQKLEYLPEAHTDFIFAIIGEELGYVGVVLALLMVFFVAFRAMSIGRKAL
                     EIDHRFSGFLACSIGIWFSFQALVNVGAAAGMLPTKGLTLPLISYGGSSLLIMSTAIM
                     MLLRIDYETRLEKAQAFVRGSR"
     gene            complement(18843..20159)
                     /gene="murD"
                     /locus_tag="JN078_001103"
     CDS             complement(18843..20159)
                     /gene="murD"
                     /locus_tag="JN078_001103"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HAY9040380.1"
                     /translation="MADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL
                     DKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCRE
                     AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAECELYVLELS
                     SFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALT
                     MPIRGADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAA
                     LALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGL
                     QVDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVAEQTETME
                     QAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKELG"
     gene            complement(20162..21244)
                     /gene="mraY"
                     /locus_tag="JN078_001104"
     CDS             complement(20162..21244)
                     /gene="mraY"
                     /locus_tag="JN078_001104"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HAY9040381.1"
                     /translation="MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRM
                     IAHLQKLSFGQVVRNDGPESHFSKRGTPTMGGIMILTAIVISVLLWAYPSNPYVWCVL
                     VVLVGYGVIGFVDDYRKVVRKDTKGLIARWKYFWMSVIALGVAFALYLAGKDTPATQL
                     VVPFFKDVMPQLGLFYILLAYFVIVGTGNAVNLTDGLDGLAIMPTVFVAGGFALVAWA
                     TGNMNFASYLHIPYLRHAGELVIVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGA
                     LGIIAVLLRQEFLLVIMGGVFVVETLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWP
                     EPRVIVRFWIISLMLVLIGLATLKVR"
     gene            complement(21238..22596)
                     /gene="murF"
                     /locus_tag="JN078_001105"
     CDS             complement(21238..22596)
                     /gene="murF"
                     /locus_tag="JN078_001105"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HAY9040382.1"
                     /translation="MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALK
                     GERFDAHDFADQAKAGGAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQVPARV
                     VALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELG
                     ANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMN
                     ADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP
                     LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYN
                     ANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGK
                     QSHAISTASGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQENG
                     TC"
     gene            complement(22593..24080)
                     /gene="murE"
                     /locus_tag="JN078_001106"
     CDS             complement(22593..24080)
                     /gene="murE"
                     /locus_tag="JN078_001106"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HAY9040383.1"
                     /translation="MADRNLRDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGH
                     QADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFY
                     HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTG
                     SAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDM
                     EHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKV
                     IDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNLLLALATLLALGYPLADLLKTAA
                     RLQPVCGRMEVFTVPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDK
                     GKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTC
                     AVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGVIA"
     gene            complement(24067..25833)
                     /locus_tag="JN078_001107"
     CDS             complement(24067..25833)
                     /locus_tag="JN078_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000642204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase FtsI"
                     /protein_id="HAY9040384.1"
                     /translation="MKAAAKTQKPKRQEEHANFISWRFALLCGCILLALAFLLGRVAW
                     LQVISPDMLVKEGDMRSLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAG
                     GISVGDRWKALANALNIPLDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIH
                     LREESRRYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVI
                     EDISSTDSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMA
                     NSPSYNPNNLSGTPKEAMRNRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPY
                     RINGHEIKDVARYSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLG
                     LVGERSGLYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVD
                     PPVPGERVFPESIVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRYI
                     NKYIAYTAGVAPASQPRFALVVVINDPQAGKYYGGAVSAPVFGAIMGGVLRTMNIEPD
                     ALTTGDKNEFVINQGEGTGGRS"
     gene            complement(25849..26214)
                     /gene="ftsL"
                     /locus_tag="JN078_001108"
     CDS             complement(25849..26214)
                     /gene="ftsL"
                     /locus_tag="JN078_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000625658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HAY9040385.1"
                     /translation="MISRVTEALSKVKGSMGSHERHALPGVIGDDLLRFGKLPLCLFI
                     CIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIAT
                     EKLQMQHVDPSQENIVVQK"
     gene            complement(26211..27152)
                     /gene="rsmH"
                     /locus_tag="JN078_001109"
     CDS             complement(26211..27152)
                     /gene="rsmH"
                     /locus_tag="JN078_001109"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HAY9040386.1"
                     /translation="MMENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQ
                     LGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDL
                     GVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERF
                     AKRIARAIVERNREQPMTRTKELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEE
                     IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKL
                     GGRQLRALGKLMPGEEEVAENPRARSSVLRIAERTNA"
     gene            complement(27154..27612)
                     /gene="mraZ"
                     /locus_tag="JN078_001110"
     CDS             complement(27154..27612)
                     /gene="mraZ"
                     /locus_tag="JN078_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HAY9040387.1"
                     /translation="MFRGATLVNLDSKGRLSVPTRYREQLLENAAGQMVCTIDIHHPC
                     LLLYPLPEWEIIEQKLSRLSSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHA
                     GLTKEVMLVGQFNKFELWDETTWHQQVKEDIDAEQLATGDLSERLQDLSL"
     gene            complement(28214..29218)
                     /gene="cra"
                     /locus_tag="JN078_001111"
     CDS             complement(28214..29218)
                     /gene="cra"
                     /locus_tag="JN078_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catabolite repressor/activator"
                     /protein_id="HAY9040388.1"
                     /translation="MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVRE
                     HNYHPNAVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQ
                     PDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANAPFPIVALDRALDREHFTSVV
                     GADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYAN
                     SYEREAAAQLFEKWLETHLMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDN
                     ELLDFLQCPVLAVAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS
                     "
     gene            complement(29300..29386)
                     /locus_tag="JN078_001112"
     CDS             complement(29300..29386)
                     /locus_tag="JN078_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fruR/shl operon leader peptide"
                     /protein_id="HAY9040389.1"
                     /translation="MCNLQPNMSRWAFFAKSVGTWNKSSCRS"
     gene            complement(29398..29889)
                     /gene="ilvN"
                     /locus_tag="JN078_001113"
     CDS             complement(29398..29889)
                     /gene="ilvN"
                     /locus_tag="JN078_001113"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001563086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HAY9040390.1"
                     /translation="MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLS
                     RMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVK
                     RNTEIFRGQIIDVTPSLYTVQLAGTSDKLDAFLASIREVAKIVEVARSGVVGLSRGDK
                     IMR"
     gene            complement(29892..31616)
                     /gene="ilvI"
                     /locus_tag="JN078_001114"
     CDS             complement(29892..31616)
                     /gene="ilvI"
                     /locus_tag="JN078_001114"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025294.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 3 large subunit"
                     /protein_id="HAY9040391.1"
                     /translation="MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGID
                     HVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQ
                     VATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVD
                     LPKDILNPANKLPYVWPESVSMRSYNPTTTGHKGQIKRALQTLVVAKKPVVYVGGGAI
                     MAGCHQQLKETVEALNLPVVSSLMGLGAFPATHRQALGMLGMHGTYEANMTMHNADVI
                     FAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLEL
                     LSQESAHQPLDEIRDWWQQIEQWRARQCLKYDTHSEKIKPQAVIETLWRLTKGDAYVT
                     SDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGS
                     IQMNIQELSTALQYELPVLVVNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLA
                     EAYGHVGIQISHPHELESKLSEALEQVRNNRLVFVDVTVDGSEHVYPMQIRGGGMDEM
                     WLSKTERT"
     gene            complement(31934..32878)
                     /gene="leuO"
                     /locus_tag="JN078_001115"
     CDS             complement(31934..32878)
                     /gene="leuO"
                     /locus_tag="JN078_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LeuO"
                     /protein_id="HAY9040392.1"
                     /translation="MPEVQTDHSETAELSKPQLRMVDLNLLTVFDAVMQEQNITRAAH
                     VLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPG
                     SGFEPASSERVFHLCVCSPLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQ
                     ETEFVISYEDFHRPEFTSVPLFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAVSLDR
                     FASFSQPWYDTVDKQASIAYQGMAMMSVLSVVSQTHLVAIAPRWLAEEFAESLELQVL
                     PLPLKQNSRTCYLSWHEAAGRDKGHQWMEEQLVSICKR"
BASE COUNT         7911 a         9255 c         8018 g         7772 t
ORIGIN      
        1 gattagatac ctgcgacggt ggcagcaatg gcattccctc gcctaccacc acccgctatg
       61 tttcagccat gagtgtggca aaaggcgtgg tgtcgctgac cgggcaagaa agtctcaatg
      121 gactaagcgt cgtcatgacg ccaggttggg ataacgcaaa cggcgtcacc ggctgggcgc
      181 gcaactgcaa tattcaaagt gacagcgcat tgcagcaagc ctgcgaagat gtcttccgct
      241 ttgatgacgc caactaagga gcggcaatga atattccaca gctcaccgcc ctgtgtctgc
      301 gttatcaggg agtcttgctg gatgccagcg aagaggtggt tcatgttgcg gtagtcgatg
      361 caccttcgca tgagttgctg gacgcattgc atttcgctac caccaaacgt attgagatca
      421 cctgctggac gcgccaacaa atggaaggcc acgccagtcg cacacaacag acattgcccg
      481 tagctgttca ggagaagcat cagtcgaaag cagagttgct gactcgaacg ttacaatctg
      541 cgctggaaca acgtgcgtct gatattcata tcgaaccagc ggacaatgcc taccgcatcc
      601 gcttgcgtat cgacggcgta ttgcatcctt taccggatgt ttcaccggat gccggagtcg
      661 cattaaccgc cagattaaaa gtgctgggaa acctggatat tgcggaacat cgcctgccgc
      721 aggacgggca attcactgtc gaactggcag gaaacgccgt ctcatttcgt attgcgacct
      781 taccatgtcg gggtggtgaa aaggtggtat taaggttgtt acagcaggtg aaccaggcac
      841 tggatgttaa cacgctggga atgcagccgt tacaactggc ggactttgct catgccttgc
      901 aacaaccaca gggactggtg ctggtaactg gccctacagg cagcggcaaa acggtcacgc
      961 tttatagtgc cctgcaaaag ctgaataccg ctgacattaa tatttgtagc gtcgaagatc
     1021 cggttgagat ccccatagcc ggactaaacc agacgcaaat ccatccgcgt gccgggctca
     1081 cctttcaggg cgttttgcgt gcgttattgc gccaggatcc tgacgtcatc atgatccgat
     1141 ggcgaaacgg cagaaattgc cattaaagcc gcgcaaaccg gtcacctggt gttgtctacc
     1201 ctacacacta attccacctg cgaaacgctg gtacgtttac agcaaatggg agtcgcccgc
     1261 tggatgctct catcagcgct tacgctggta atagcccagc gtctggtacg taaattttgc
     1321 ccacattgtc gccagcagca aggggagccc atccatattc cagacaatgt atggccgtcg
     1381 ccgctgcccc actggcaggc acccggttgt gtacattgct accacggttt ttatggtcgt
     1441 accgccttgt ttgaagtcct gcccattaca ccagccatac gccagcttat ttccgctaat
     1501 accgacgttg aatcgctgga aacgcacgca cgacaggcgg gtatgcgtac gctttttgaa
     1561 aacggctgcc tagccgtgga gcaaggctta accacctttg aagagttaat ccgcgtactg
     1621 gggatgccgc atggcgagta agcaactctg gcgctggcat ggcataaccg gcgacggcaa
     1681 tgcgcaagat gggatgctat gggcagagag ccgtgctttg ctgctcatgg cactacagca
     1741 acagatggtt accccactta gcctgaagcg aatcgccatc aattctgcgc agtggcgagg
     1801 agataaaagc gcggaagtca ttcatcaact ggcgacgcta ctcaaagccg ggttaacgct
     1861 ttctgaaggg ctggcactgc tggcgggaca gcatcccagt aagcaatggc aagcgttgct
     1921 gcaatcgctg gcgcacgatc tcgaacaggg cattgctttt tccaatgcct tattaccctg
     1981 gtcagaggta tttccgccac tctatcaggc gatgatccgc acgggtgaac tgaccggtaa
     2041 gctggatgaa tgctgctttg aactggcgcg tcagcaaaaa gcccagcgtc agttgaccga
     2101 caaagtgaaa tcagcgttac gttatcccat catcatttta gcgatggcaa tcatggtggt
     2161 tgtggcaatg ctgcattttg ttctgccgga gtttgccgct atctataaga ccttcaacac
     2221 cccactaccg gcactaacgc aggggatcat gacgctggca gactttagtg gcgaatggag
     2281 ctggctgctg gtgttgttcg gctttctgct ggcgatagcc aataagttgc tgatgcgccg
     2341 accgacctgg cttatagtgc ggcagaaatt gctgttacgc atcccgatta tgggttcact
     2401 gatgcgggga caaaaactca cgcagatctt tacgattctg gcgctgacac aaagtgcagg
     2461 cattactttt ttgcagggcg tagagagcgt cagagaaaca atgcgctgcc cgtactgggt
     2521 gcaacttctg acacaaatcc agcacgatat cagtaacggt catcccatct ggctggcgct
     2581 aaaaaatacc ggggagttta gcccgctctg tttgcaatta gtgagaacag gagaggcatc
     2641 cggctcgctg gacctcatgt tagacaacct cgcccatcat catcgggata acacaatggc
     2701 gctggcggat aacctcgcag ccttactgga accggcgttg ctgatcataa cgggaggaat
     2761 tatcggtacg ctggtggtgg cgatgtatct gccaattttc catttaggcg atgcgatgag
     2821 tgggatggga taacgctggc gtgttgctcc acaccagcgt tggaagatta caggttgttg
     2881 aagatgcggt tttcttgttc ctgcacacgg ataaatgtgg tgcgcttggt cagttctttc
     2941 aggcgtgaag ccccaacgta tgtacaagct gaacgcaggc cgcccaaaat atcacgcgcg
     3001 gtattttcaa ccgggcctcg cagcggcagc ttaacggttt taccttctgc tgcgcgatat
     3061 tccgcaacgc cgccaacgtg acgtttcatc gcagactcgg agctcatgcc gtagaacagc
     3121 ataaatttct cgccgttctc ctcaacgatg cgaccgccgc tctcttcgtg gcccgccagc
     3181 atgccgccaa gcatgacgaa atcggcaccg ccgccaaagg cttttgcgac atcgcccggc
     3241 gtggtgcagc caccgtcgct gacgatcatt ccgcccagac cgtgcgccgc atcggcacat
     3301 tcgattaccg cagaaagctg cggataaccg acgcctgttt tgacgcgagt tgtacaaaca
     3361 gaacctgggc caatgccaac tttaacgata tcagcaccgg agaggataag ctcctcacac
     3421 atttcaccag tcactacgtt gccagcacaa atggttttgg tcggccacgc ttcacgcgct
     3481 ttcgcaacga actgcacgaa gtgttcggaa taaccattcg ccacatcaat acaaacaaag
     3541 tttaatgccg ggttcaggtc gagaatctgt ttagtttttt cgaaatccgc atcagacgta
     3601 ccggtagaaa ccatcacatg tttcagcaca tcagcggaag aattgttgat aaacgcttgc
     3661 cactcttcga cagaatagtg tttatgcaca gcagtcaaaa tatcaaaaga agccagcgca
     3721 gaggccatag aaaatgtacc tacggtgtcc atatttgcgg cgataatcgg cacgccggac
     3781 cagctctgat ctgaatgttt gaaggtgaat tgacgttcca gttcaacatc ggaacggctt
     3841 ttaagagtgg agcgtttagg gcggatgaga acgtctttaa aacctaactt cagatcttct
     3901 tcaatacgca tgtgcggatt cctggggtta atggctataa gggtaagagc gcaactccag
     3961 tgacgctatc atacgcacta atcaatgcgg cgcaagactg cgaaattgtc tttttttacg
     4021 ctacaatccc ataaatttac ctggtaaata gtgagcgaac gtttcatcaa tttcgctttc
     4081 gtgcactcat ttttaacgtt ttgataatca tgatgaattc ccgggaatat aaattatgag
     4141 gtatatagtt gccttaacgg gaggcattgg cagtggcaag agtaccgttg ccaatgcgtt
     4201 tgctgatctc ggaattaacg tcattgatgc cgatattatt gcgcgtcagg tggttgaacc
     4261 aggtgcacct gcgctacatg ccattgctga tcactttggc gctaacatga ttgctgctga
     4321 tggaacattg cagcgccggg ccttgcgcga gcggatcttc gccaacccgg aagagaaaaa
     4381 ctggcttaac gccctgctgc atccgctgat tcagcaagag acgcaacacc agatccagca
     4441 agctacttcc ccctatgtac tgtgggttgt gccattgctg gtagaaaact cactgtataa
     4501 aaaagcgaat cgagtgctgg tggtggatgt cagcccagaa acgcaactta agcgcaccat
     4561 gcagcgcgat gatgtaactc gcgagcatgt cgaacaaatc cttgctgctc aggcaacgcg
     4621 cgaagcccgc cttgccgtgg cagatgacgt cattgataat aacggcgcac cggatgctat
     4681 cgcatcggat gttgcccgcc tgcacgcaca ctatttgcag cttgcgtcgc agtttgtctc
     4741 acaggaaaaa ccgtaatgca gacccaggtc ctttttgaac atccactaaa tgaaaaaatg
     4801 cgtacatggc tgcgcattga gtttttgatt cagcaactca ccgttaattt acccatcgtt
     4861 gaccacgctg gcgcgctgca tttcttccgt aatgtcagtg aattactgga tgttttcgag
     4921 cgcggcgaag tccgcactga gctgttgaaa gaacttgacc ggcagcaacg taaactccag
     4981 acctggattg gcgtgcctgg cgtggaccag agccgtattg aagcattaat tcagcagtta
     5041 aaagcggcgg ggagcgtatt aatttccgcg ccgcgtatcg ggcaatttct gcgtgaagat
     5101 cgtttgattg ctctggtgcg tcagcgactg agcatcccag gcggctgttg cagctttgat
     5161 ttacctacat tgcacatttg gctgcatcta ccccaggcgc agcgcgacag ccaggtagaa
     5221 acctggattg ccagcctgaa cccgctcacc caggcactta ccatggtgct ggatttaatt
     5281 cgccagtcgg cccccttccg taaacaaacc agcctgaatg gtttttatca ggataacggt
     5341 ggcgatgccg acttgctgcg cctgaatctg tcgctcgatt cacagcttta tccgcaaatt
     5401 tccggacata agagccgttt tgccattcgt tttatgccgc tggacagtga aaacggacag
     5461 gtaccggaac gtctagattt cgaactggcc tgttgctaag gagtgaaaat gtcagaaact
     5521 attacggtga attgcccaac ctgcgggaaa acggtggtat ggggtgaaat cagcccgttt
     5581 cggccatttt gctccaaacg ttgtcagctg atcgacctcg gagaatgggc tgctgaagaa
     5641 aaacgaatcc ccagcagtgg cgatctttcc gaaagcgatg actggagcga agagccaaag
     5701 cagtgacatt ggtctgatgc cgcacatagg cctgataaga cgcggacagc gtcgcatcag
     5761 gcatcttgtg caaatgtcgg atgcggcgtg aacgccttat ccgacctaca gactacagac
     5821 gcttaagctt cgcaattacc ggttcattgg ctggcggaaa atcatcggca ttaagaccga
     5881 ccagcgacat ccactcaccg ggttgccctt ctttacccca cggcacccct tcccaacttt
     5941 cgaccagcca gaaccacaga gttatatgcc tgtccgggaa ttcatatgcc agtttttcaa
     6001 atagcgaaaa atgttgtggg gtaatcccga cctcttcctg aagttcacgc accaccgcct
     6061 gttccggcgt ttcgcccatt tcaattttac cgccgggaaa ctccagttta ttcgccatgt
     6121 gcgcatctgc tgcgcgacgc gttataaaga tttcattgtt ctcgttgcga ataataccta
     6181 ccgcaatttg cagctttttc attgttttaa acctataaaa aaggcgcaga atcctgcgcc
     6241 ttttgcttca acagttagct tttattgcag gcggccatga cactgcttgt attttttacc
     6301 agaaccgcac gggcaaggat cgttacgtcc tactttgcgc tcaccggttt gcgccgccag
     6361 tgcagctgcg gctgcagagt cgtcatcctg atggctaagc tgctgcattt gcgctaaacg
     6421 ctcggcttcc atacgacgct gttgttccag ctcctcaacc tcttcaggca tacgtacctg
     6481 aactttgctc agcgtactga taacttcata tttcaacgac tccagcatcg ctgcaaacat
     6541 ggagaacgat tcacgtttgt attcctgctt cggatctttc tgtgcatagc cacgcaggtg
     6601 gataccctga cgcagatagt ccatcgctgc caggtgctct ttccacaggg agtcaagcgt
     6661 ttgcagcatg acgcctttct cgaagtgacg catcatctca gcaccaacca cttcttcttt
     6721 acgctgatac acttcgatgg actgcgccag aatgcgctca cgcagcgtct cttcatgcag
     6781 ttctggttct ttatccagcc actcggcaat tggtaaatcg aggtcgaaat cgttcttcag
     6841 acgttcctgc agccccggaa tatcccacat ttcttccagc gactgtggcg gaatgtaggc
     6901 atcaatggtg gctttgaaca catcttcacg aatgctgttg atggtttcgc tcacatcgct
     6961 gacatccagc agttcgttac gctgggagta aatggcgcga cgctgatcgt tagccacgtc
     7021 atcatattcc agcagttgct tacgaatgtc gaagttacga ctttcaactt tacgctgggc
     7081 gttggcaatc gctttagtca cccacgggtg ttcaatggct tcgcctggct tcatacccag
     7141 tttacgcatc atgccggata ctcggtcgga agcaaaaata cgcatcagcg catcttccat
     7201 cgacaggtag aaacgggaag aaccagcatc cccctgacga ccagaacgac cgcgcaactg
     7261 gttatcgata cgacgggatt cgtgacgctc ggtaccgatg atatgcaggc cacctgcttc
     7321 cagtaccgca tcgtgacgta cctgccagtc ggctttaatt ttttcaattt gctctgcggt
     7381 cggattttcc agcgcggcaa cttctgcctg ccagctacca ccgagcacaa tatctgtacc
     7441 acgacccgcc atattggtcg cgatagtcac cgcagccgga taacctgcct gagcaacaat
     7501 cgccgcttcg ttggcgtgga atttggcgtt caggacgttg tgcttaatac cggctttggt
     7561 cagttcgttt gacaccagct ccgatttttc gatggagata gtacccacca gcaccggctg
     7621 gcctttcgca gtacgttctt tgatatcttc aatgatcgcc tgaatttttt ccgcttcagt
     7681 catgtagacc aggtccggca gatctttacg aatcattgga cggttggtcg gaacaacgac
     7741 ggtatccagc ttgtagatgg agctaaattc gaaagcttcg gtatcagcag taccggtcat
     7801 ccccgccagt ttttcataca gacggaagta gttctggaag gtgatcgaag ccagcgtttg
     7861 gttttcgttc tggatctgca caccttcttt cgcttccaca gcctggtgca gaccatcgga
     7921 ccagcgacgg ccctgcatgg tacgaccggt gtgttcgtca acgatgataa cttcaccatc
     7981 tttaacgatg tagtcgacgt cgcgggtaaa cagcgcatga gcgcgcagcg ccgccgttac
     8041 gtggtgcatc agcatgatgt tggccggaga gtacagagac tccccttcat ccatgatgcc
     8101 ctctttcacc agcagttctt caatcagcac cagaccacgt tcggtcaggt tcacctggcg
     8161 agatttttcg tccaccgaga agtggccttc gccctggaag gtttcggagt cttctttttc
     8221 ctgacggatc aggtgcggaa taattttatt cacgcgttta tacatttccg agctgtcttc
     8281 tgccgggccg gaaatgatca gcggtgtacg cgcttcatcg atcaggatgg agtccacttc
     8341 gtccaccagc gcatagtgca gtttacgctg tacacgttct tcagggctga acgccatatt
     8401 gtcgcgcagg tagtcaaagc cgtattcgtt gttcgtaccg taagtgatgt cagctgcgta
     8461 agcttcgcgc tttgccggtg ctggcatgcc cggcaggttg ataccgacag tcaggccaag
     8521 gaattcaaac agcggacggt tgttttcggc gtcacgttgc gccaggtagt cgttgacggt
     8581 aactacgtgc acgcctttac cggttagtgc gttcaggtaa gcaggcagcg ttgcggtcag
     8641 ggttttacct tcaccggtac gcatttcggc gatgcagcgt tcgttaagaa ccataccgcc
     8701 gagtaactga acgtcgaagt gacgcatacc aaagacgcgc ttacttgcct cacgtaccac
     8761 ggcgaaagct tccgggatca gattttccag cacttcgcct ttttccagac gtgcacgaaa
     8821 ctctgcggtt ttccctttca gttcttcgtc ggagagtttt tccatctccg gttccatggc
     8881 attgatgatg ttgaccactt tgcgcatccg gcgcagggtg cgatcgttac gactaccgaa
     8941 aactttagtt aacaatttga ttagcataat aaaatctcaa acgccccgcg ttgcggagtt
     9001 aataaaatga agtaaaggtt tattgttgtt aggtgaggcg ttgagggcca gcacggatgc
     9061 cttgcgcctg gcttatccag acgggcgtgc tgaattttgc ttgtggggta aaatgcgcat
     9121 aatcaatgcg ataacccttt tcagacggcg tgccttcctg ggtcagcagc gcgctgagcg
     9181 tatccagtaa tgcaagatgt tgcgcctgaa gaggcaaaga ttcttcagca acgggcagtg
     9241 tttgcggtgc cattgcgaaa gaaagatgac ggattaccgt gcgaatggca tattgatgcc
     9301 agtaatcaac ggaatagttc gaattcgggc ggcgtgtgtt cgcttccagc aaggccaatt
     9361 gaccaaagtt aactttggct gaaggctcgt ggttgcgggt tgtcgctttt gcgggcacgt
     9421 ttggttcggc ggcgttgctg agcgcaggca aacctaaact cgccgcgacc atccctaata
     9481 agagatgcgg ccagaagtag cgtttaccaa actgtcgcca gcgcgtcagt attccactca
     9541 cgttattgcc atcccgatcg aattcaaacg tatttagcgc acaaatctta tcattaaagc
     9601 ctgaagtcca cagcatgaat gaagataagt tgtgcgtaaa agtgcttaag aaaacagcgt
     9661 tcgcaccgtt ttttatagct cttataaaat tcaaaaaaaa acgactggtt cacctggccg
     9721 gagagagtgc cagatttgcc agtcgaattt tatacgacag tataaatgtc gttatgccag
     9781 tacagctgaa ggcgctttga aggtcaacgg cagttctgcg tcgtcctgga aggtcacata
     9841 ttcccaagct tcctgtttcg ccaggacagc ctgcagcagt ttgttattca gtgcatgacc
     9901 ggatttataa gcgataaatg caccaataat attgtgacca cacatgaaca agtcaccgat
     9961 cgcatcgagc attttgtgac gcacaaattc gtcttcaaaa cgcaggccgt cttcgttcag
    10021 tacgcgataa tcgtcaacaa cgatggcaca atcgaagctg ccgcccaggc acaaaccacg
    10081 ggactgcaga tattcgatat cacgcatgaa accgaacgta cgcgcacggc tgatctggcg
    10141 cataaacgca tcagcggaga agttcatcgc atagcgctgg ttgctggaat caatagccgg
    10201 atggttaaaa tcgatggtga aatccagcga aaaaccattg tacggcttaa attcagccca
    10261 cttatcgcca tcttcgacac gaacagtctc tttgatgcga acaaattttt tggcgcagtt
    10321 caactcgtcg ataccggcgt caagcagcag gtatacaaac ggagcggcgc tgccgtccat
    10381 gatcgggatt tccggcgcgt taacttcgat aacaatgtta tcgatgccca ggcccgcgag
    10441 agcagcattg aggtgctcta cggttgaaat ccgtacatca tgctcgttga ccagacacgt
    10501 acagagcatg gtatcacgca cagatttggc atcggccggg aaatctaccg gtggattcaa
    10561 gtcggtgcga cgatagatga ccccggtgtt ggccggcgca gggcgtaacg tcagagtgac
    10621 tttcttgccg gtatgtaaac cgacacccgt cgcctgaacg atacgtttaa gtgtcctttg
    10681 tttgatcatc gtattatctc gccaaattac ctatccaacc gaagtgtact atacattcgg
    10741 cgggccagtt tagcacaaag agcctcgaaa ccaaaattcc agtcaattct taatcagctt
    10801 gcttacgcag gaatgctggg atatccagat aatccggctc tttcgcagtt tgcggcgcat
    10861 tgtcattcac gactttagca accggcttct gctcctgggt cagcggagcc atcccatgct
    10921 gctggtagcg atccatcact ggctgctgaa cctgcttatt ggtcaccaga gtgatttcag
    10981 gacgtttgtc catgccgata cctgtcgcaa caacggttac gcgcagctcg tcattcatat
    11041 ccgggtcaag agaagtaccg ataaccacag tcgcgttgtc ggaagcaaat gcacggatgg
    11101 tgttacctac cgtttcgaac tcatccagac gcaggtcgaa gcccgccgtg atgttaacca
    11161 gcacgccgcg cgcgccagac aggtcgatat cttccagcag cggagaagag atagccattt
    11221 cagcagcttc ttccgcacgg tcttcaccgc tcgccacgcc agaacccatc attgcgtagc
    11281 ccatctcaga cattacggtg cgtacgtctg caaagtccac gttcatcaaa cccggacgag
    11341 taatcagttc agcgatacct tgcacagcgc ctttcagtac atcgttcgct gcgccaaacg
    11401 catccagcag ggagataccg cggcccagaa ctttcagcag tttgtcgttc gggatagtga
    11461 tcagagagtc cacatgcttg gacagttcag tgatcccctg ctccgcgaat gccatacgct
    11521 tcttgccttc aaagttgaaa ggcttagtga cgacagcaac ggtcaggata cccaaatctt
    11581 ttgccacttc agcgacgact ggtgctgcac ctgtaccggt accaccaccc atacccgcag
    11641 caataaagac catgtctgca ccttccagcg ccgcacgcaa tgcatcgcga tcctcatcag
    11701 ccgcattgcg gccaacttct ggattagcgc cagcgcccag tcctttggtg ataccgctac
    11761 cgatttgaat cgtctgtcca accgctgttt tacgcagcgc ttgtgcatcg gtatttaccg
    11821 cgaagaattc aacaccttca atgcgctcgc gcaccatgtg ttcaacagca ttaccgccgc
    11881 cgccgccgac gccgatgact ttaatcaccg cgtcattggt aagttccatt ggttcaaaca
    11941 tagtttctct ccgatttgtg cctgtcgcct gaggccgtaa tcatcgtcgg cctcataaaa
    12001 attaaaactc ttttcgcagc caactattga gtcgcttgat ccacgagcca actgatgctg
    12061 taacacgttt ttctacttca gcttcaccgt taagatgtga ctctttccca tagtgaagca
    12121 atcccaccgc cgtcgaataa tacggctcct gagcataatc cgttaaaccg gtaatgttca
    12181 gcggcgcgcc gatacgcact tgcgtatgaa acacgcgctg agcacaggct gcaagacctt
    12241 cgatctgcgc tgcgccaccg gttaatacaa tgcctgccgc caggtgatgt ttaacccctt
    12301 gttggcgaag cttttcctgc aactgcaata tctcttcgtt gaccaggttg agcagctcgg
    12361 tatagcgcgg ctcgatcacc tctgccaggg tctgacgttg cagactccgt ggcggacgac
    12421 cgcctacgct cggcacttcc acgctctcat cttttccaac gatggaaccc agcgcacaac
    12481 cgtggcgaac tttaatcgct tcggcgtcgc ttggcggcgt gccaaaggcg taagcgatat
    12541 cactggtcac gacattgcca gcataaggaa ttaccttagt gtggcgcaat gccccaccgg
    12601 tataaacggc gatatccatt gtaccacctc cgatatcgac gacgcagaca cccagttcac
    12661 gttcatcttc cgtcaatacc gaataacttg atgccagtcc ggcaaatatc agttggtcaa
    12721 ctttcagccc acaacgttca accgctttga cgatgttttt cgccatatcg ttgtgacatg
    12781 tgatcaggtg cacttttgcc tgcatccgca cgcccgaaag tcctaccgga ttcttgatcc
    12841 cttcctgata gtcaatcgca tactcttgcg ggatcacatg cagcacacga tgttcatcgc
    12901 gcacacgcac cgatttcgcg gtatggacga cgttttccac atcttcttgc gtcacttctt
    12961 cttcagaaat aggcaccata ccaatttcat tctggcagct gatgtgctta ccagaaagcg
    13021 ccagatatac cgaagagatc tgacaatctg ccatcaattc tgcctggtca atggcgcgtt
    13081 gtacgcactt gaccacggat tcgaggtcgt tcaccccgcc tttatccata ccacgtgacg
    13141 ggcagctgcc cacgccaatg atattgacca taccgtcggg cagaacttcc cctactaaag
    13201 cggcaacctt cgcggtacca atctccagtc ctactaccag ttttctgtcc gtcgccttga
    13261 tcattgttgt tctgcctgtg cctgattttg ttgctgagta gattcctctg gcggcaaggg
    13321 cgcccagcct actgccgctc cagagtcata acgcaaatca acgtagctaa tccgtttgcc
    13381 atcggtttgc gccagctgct gtaaaaccgg ataaagttct acaaagcgag ccaaacgttt
    13441 catcgtatcg ccccggccaa gattgagctt aatatcgtta ttcagcgtca actgccagga
    13501 acgccgcgcg gtcatcgccg tttccttcag agtaaatctg tcctttgcca gcatctgccc
    13561 catttcgcga tagccctgca acacttcatt ggcgctgcct tccgggccat acagcattgg
    13621 aagcacctgc ttgctggtgc gatctggcgg cacgctgaag gtgtttcctt ccgcgtctac
    13681 catatgttga tcattccacc gcgcaatcgg cacatattca accagatgaa tcttcaattc
    13741 atcaggccac tgctttctga cgctcacctg cttaatccac ggcaggcgtt gttctatttg
    13801 cgtctggatg atgttgacat cctgggtcat aaaggtaccc ggctcaccca atgccaggat
    13861 cgactgccgg atatcgtcat tacgcgtgta atggcgttca ccggtcaaca ccagctttga
    13921 gagcggcagg cgttgcgcat cttccatcca gcccaacacg acccagccgc tcaccaacac
    13981 tgtcgttaaa acggtcagca ggaaaaggat ccccgccaga cgcgttccat tattgcggcg
    14041 agaagaaacc tcttcttcgc tgtttcgcgt gttcagagca gcctgcgaca tattagtccg
    14101 ccagttccag aattcgtact accaactgcg agaagctcat acctgcctga cgtgccgcca
    14161 tcggcaccag gctgtggctg gtcatacccg gtgaggtatt ggcttccagc agataaaact
    14221 gtccatcgct gtccagcata acgtcaatac gtccccatcc tttgcaacct aacgtcgtcc
    14281 atgctttcag cactaatgcc tgcaaattgg cctcttgtga cgcatccaga cctgcggggc
    14341 agaaatactg tgtctcatca gagagatact tcgcctcata atcatagaag gttccggacg
    14401 gttgaatacg tattgacggt aaaatttctt caccgagtat cgcaaccgtg aactccggcc
    14461 cacttagcca tttttcaatc aatacttctt catcgtgctg aaatgccaat cttaatgcat
    14521 cttgtagagc attttctgct actacttttg acattcccac actggaacct tcgcggctcg
    14581 gcttaacgat aaccggcaaa cccagagcag aaatttctgc taactgctta tcgctcaggc
    14641 ctttttcaaa ctctgcgcgg gttaacgcta cccacggcgc gaccggtaaa ccggcacctt
    14701 gccacagcag tttgctgcgt agtttatcca ttgaaagcgc agatgccatc actccgctgc
    14761 cggtataagg caagcccatc agctcgagca tgccctgcag cgtaccatct tcaccgccgc
    14821 gaccgtgtag cgcgataaac actttctgaa aacccatcga cttcagttgc gtcacgtcga
    14881 cttctttcgg gtcgacagga tacgcatcaa taccaccttc acgcagcccg gctaacaccg
    14941 ctgcgccaga attcagagaa acttcccgct cagcggaagt cccgcccaac aggaccgcga
    15001 ttttatcagt catgttgttc ttcctccgga gtttgcggct tcagtttgat ttcagctaaa
    15061 gaacgggcaa tttttccgat attaccagcc ccctgaacga gaatcaggtc gttaccggtt
    15121 aataccggtg ccagcatctc ggctacctgc gcagggtccg gcaccagaat gggatcaatt
    15181 ttcccacgtc cacgaattgt gcgacacagc gaacggctgt ccgctcccgg aattggcgct
    15241 tcgccagccg gatacacttc cagcatcaac agggtatcaa cctgcgtcag cacattggcg
    15301 aaatcatcat acaagtcgcg cgtacgggta aaacggtgcg gctgaaacag cattaccagg
    15361 tttttatccg gccagcctgc gcgcgccgct ttaatggtgg cgtcaacttc cgtcgggtgg
    15421 tggccgtagt catcgaccag cattgccgta ccgcttttac cattcactgg ctccagcggg
    15481 aattcaccga ggaaatcaaa acggcgacca gtccccagga agctctccag cgcacgcaaa
    15541 atagcctcgt cgtcaattcc ctcttccgta gcaaccgcaa ccgcagctgc ggcgttcagc
    15601 gcgttatgac ggcctggcgc attcagggtg acgcgcatcg gctctttgtc ctggcgcagc
    15661 agcgtaaagt gcccctgcgg gccaatctgc tgataatctt ctacacgcac gtcggcatct
    15721 tcgctgaagc cgtaagtcgt ggtctgacgt cccacacgcg gtaacaattc gcggatcacc
    15781 ggatcatcaa cacacatcac cgcacgaccg taaaacggca ggttgtgcag aaaattaata
    15841 aaagtctgtt ttaaattctc aaagtcgccc tggtaggtat ccatgtggtc ggcttcgata
    15901 ttggtgacaa tcgccaccat cggttgcaga tgcaggaacg atgcatcact ctcatctgct
    15961 tcggcaatca ggtaccgacc atgccccaaa cgcgcatgaa cccccgccgc ttttaccagc
    16021 ccgccgttaa cgaaggttgg gtcgagcccc gcttctgcgt agatgctgga aaccatcgcg
    16081 gtggttgtcg ttttgccgtg cgttcctgca atggcgatgc catgacgaaa acgcattaac
    16141 tcagccagca tttcggcacg acggatcacc ggaatacgcg cttcatgagc tgcgacaatt
    16201 tccgggttat cggcagaaat ggcgctggaa acaacgacca cgctggcatc acgtacgttt
    16261 tccgggcgat ggttgaaata aatcgtcgct cccagattca ttaactgctg cgtgaccgga
    16321 tttggcgcta aatcggaacc actgatctga taaccttcat tggccagaac ttcggcaata
    16381 ccgcccatac cggcaccacc gatgccgaca aaatgtatgt gccgaacgcg acgcatttcg
    16441 ggcacgatgg aacgcagttt tgccaattgt tgtgtattca ttctttacgc cattaacttc
    16501 ttaaattcat acgatgcaaa aggcatcgct acaattacgc ccgggcagcc cggctcactt
    16561 catttgccac tcgctcggtg gcatccggaa tggatgcagc gcgggcgcgt tctgccatgg
    16621 ttaataaggt ttctcgcgac cacccggcca gggtgttggc gacagcatcc acgctaagct
    16681 gtggctgctc gataattttg gctgcgcccg ctttttccag cggtagcgca ttccagtatt
    16741 gctggcggtc tttatgttga aacggcacaa acaacgccgg tagtcctgcc gcggcgattt
    16801 cactcaccgt taaagcaccg gagcggcaaa cgacgacatc cgcccacgca tacgccgccg
    16861 ccatatcatc aataaattcc gtcactttat gctgcggttg ccccgcttcg gcatacgcct
    16921 gttcaacgga ttgttgcgaa cctttaccgc tctgatgcca gatagtgact gaatcaccca
    16981 gtttcgcagc aacctgcggc attgtctggt taagaatgcg tgcgccctgg gaaccaccca
    17041 ctaccagcac acgaaccgga ccttcacgtc cagccaaacg ttgctgcggc aacggcagcg
    17101 ccagcacatc ggtacgcacc gggttaccca ccacttccgc attagggaaa gcgcctggaa
    17161 acgcctgcat cactttggtg gcaatcttcg ccagccattt attggttaag cccgcaatac
    17221 cgttttgttc atgaagtaca accggaatgc ctaacgacca cgcggccaga ccacctggac
    17281 ctgatacata gccgcccata ccgagtacca cgtcaggttt gtacgctttc ataatcgccc
    17341 gcgcctgacg ccaggcgttg aagatacgca gcggcgcagc tatcagtgct tttatacctt
    17401 ttccacgcag accagagata cgaatgaaat caatttcgat gccatgtttt ggcactaagt
    17461 ccgcttccat acggtcggca gtccccagcc agcgaacttg ccaaccctga gccattagat
    17521 ggtgcgcaac cgccagtccc gggaatacat gtccaccggt tccgcctgcc atcaccatta
    17581 atcgctttcc ttgaccactc atcgtgaacc tcgtacaaac gcctgcgctt tctccagacg
    17641 cgtttcataa tcaatacgca acagcatcat gatggctgtc gacataatca gtaagctcga
    17701 accaccgtaa ctgatcagcg gcaatgtcag acctttggtc ggtaacatcc ccgccgccgc
    17761 gcctacgtta accagcgcct ggaagctaaa ccagatgcca atagaacagg cgagaaaacc
    17821 ggaaaaacgg tggtcaattt ctaacgcttt gcggccaatc gacatcgcgc gaaaagcgac
    17881 gaagaatacc attaaaagtg ccagcaccac accgacatac cccagttctt cgccgataat
    17941 ggcgaaaata aagtcagtgt gcgcttccgg cagatactcc agtttttgta ccgagttacc
    18001 taaaccttgt ccccaaagtt cgccgcgacc aaacgccatc agcgattgcg ttaactgata
    18061 gccgctgcca aagggatctt cccacgggtt ccagaatgcg gtaacacggc ggatacggta
    18121 cggttcggcg agtatcagca acacaaccgc tgaaatgccc ataccgataa tggcaatgaa
    18181 ctgccacaat ttcgctcccg ccaggaacaa catcgccagc gtagtcacaa acaccaccac
    18241 caccgtacca aggtctggct gtgccagcag taacactgcc aacaccagaa tcacgcccat
    18301 cggtttcagg aagccgcgca ggttattacg tacttcgtcg cctttacgca ccagatagtt
    18361 ggcgatataa caaaacagcg acagttttgt cagctccgca ggctggatac gcagcaaacc
    18421 gagatcgatc caacgcgatg cccctttaac cgagctcccc actaccagca cgatcatcag
    18481 caggatgata gatccgagca gcatcgtggc actgtagcgt tgccagaact ccatcggcag
    18541 acgcagcgta atgatcgcca gaatgaatgc caggatcaga tagacgccat cacgcttcgc
    18601 gaagaagaac ggatcgttgg ttaagcgttg ccctatgggc attgacgccg aggtcaccat
    18661 gataaagcca atcgccgcaa ggccgaaggt cagccacagt aaggtgcgat cgtacatgat
    18721 caggctgtcg gtatcttttt cccgcgagcc catcacccag ccttttagcg ccgtggagat
    18781 ccagaccagg atactgaatc ctggcaggcg cggcattttc aggcgaggga gagataaacg
    18841 catcaaccta actccttcgc cagacgggca aactcattgc ctcgttgttc aaagttcttg
    18901 aactgatcaa ggctggcaca ggccggggag agcagaacca tatcgcccgg ctgaacacgc
    18961 ggagccagca agcgcatcgc ctgttccata gtttcggttt gttctgccac ttccgggcgt
    19021 agcgccgcca gctgcgcacc gtcacgacca aaacagtaca aacgcacgtt gtcgccattc
    19081 agatagcgcg ccagtggact gaagtccgcc gatttaccat cgccgcccag caacaaatgc
    19141 agcgtgccgt ctacctgcaa gccattcaac gccgcttccg tactgccgac gttagtggct
    19201 ttcgaatcgt taatccagcg tacgccattg tgctccagca ccacttcaaa gcgatgcggc
    19261 agaccggtga aggtggttaa cgctttcagg ctgctggcgc gcggcaaacc agctgcgtct
    19321 gccagtgcca gtgctgccag cgcattggtg tagttatgct gcccggaaag tttcatctct
    19381 ttcacgttca gcactttctc gcctttcact cgcagccagg tttctccctg ctgatgattc
    19441 aggtgatagt cacccatgtt gacgccaaag ctgacgcagc gttcatcagc accgcgaatc
    19501 ggcattgtta aggcatcatc agcattgacg acacaaactt tcgcattttc gtaaatacgc
    19561 aattttgccg cacggtattg ctgcaaacca aacggatagc ggtccatatg atcttcagtc
    19621 acgttcagaa tggtcgccgc caccgcctgt aagctggaag tggtttccag ctggaagctc
    19681 gacagttcca gcacgtacag ttcgcactca gcatcaagca gcatcaacgc tggcaggcca
    19741 atattgccac ccacaccaac gttaaccccc gccgctttcg ccatttcacc cactagcgtg
    19801 gtgaccgtgc ttttgccgtt agaaccggta atcgccacaa tcggtgcttg tgcttcgcgg
    19861 cagaatagct cgatatcgcc aacgatttcg attccggcat cagcggcagc gcttaaggat
    19921 ggatgcgcca gtgcaatacc gggactggcg acaatcagat ctgccgccat cagccattca
    19981 tcattcagac tgcccgtgtg gcgttctacg gcttcgggta atttatccag gccaggcggt
    20041 gtcatacgcg tatccataac gcgcggcgtc acaccgcgag cgaggaaaaa gtccacgcag
    20101 gaaagcccgg tgaggcccag gccgataatg acgacatttt taccctgata atcagccatg
    20161 attaacgtac cttcagcgtt gccagaccaa tcagaaccag catcagcgaa ataatccaga
    20221 aacgcacaat gacgcgcggt tccggccagc ctttcagttc atagtggtga tgaatcggtg
    20281 ccatgcggaa aatacgttgt ccgcgcagtt taaaggagcc gacctgcagg atgacagaaa
    20341 gcgtttctac cacgaacacg ccccccataa tcaccagcag gaattcctga cgtagcagta
    20401 cggcgataat gcctaacgca ccacctaacg ccagcgaacc tacatcgccc ataaagacct
    20461 gcgccggata ggtgttaaac cacaggaagc ccagtcctgc cccgactatc gcggtacaga
    20521 caataaccag ttccccggcg tgtcgcagat acggtatgtg taaatagctg gcaaagttca
    20581 tgttgccggt cgcccacgcc accagcgcaa aaccaccggc gacaaatacg gtcggcataa
    20641 ttgccaggcc gtcgagacca tcggtcaggt ttaccgcgtt gccagtaccc acaatgacga
    20701 agtaagccag cagaatgtag aacagcccca actgcggcat cacatcttta aagaatggga
    20761 ccaccagctg cgttgcgggc gtgtctttgc cggcaaggta cagggcgaag gcgacaccca
    20821 gcgcaatgac cgacatccag aaatacttcc aacgagcgat caaccctttg gtgtctttac
    20881 gcaccacttt gcgataatca tcaacaaagc caataacacc gtaacctacc agcaccacca
    20941 acacgcacca gacgtacgga ttggacgggt aagcccacag cagtacggag atcacaatcg
    21001 ccgtcaggat cataatcccg cccatggtcg gcgtaccgcg cttgctgaag tgtgattcag
    21061 gaccgtcgtt acgcaccacc tgaccaaagg aaagtttttg caaatgagca atcatacgcg
    21121 ggcccatcca caatgagatg aacagcgcgg tcagcaggct gacgatggcg cgaaacgtca
    21181 gataggaaaa gacgttaaag ccggaataat atttgaccaa atgttcggcc agccaaacta
    21241 acatgtccca ttctcctgta aagcgcgtac tacctcttcc atggcggcac tacgtgaacc
    21301 cttaactaaa atcgtaatta cctgttgctc agcaatcagt gatttaagac gcgtaattaa
    21361 cgcagtttta tcagcaaaat gttcgccaac gccgctggcg gtgctgatag catggctttg
    21421 tttacccacg cttaacacgc ggtcaatacc agcagctttt gccgcctcgc ccacctgtac
    21481 atggcaggct tcgctttcag cgcccagttc cgccatatcg cccaccacca gcacgcggta
    21541 gcccggcatt tcagccagta cctgaacagc ggcggtcatt gaaccgacat tggcgttgta
    21601 ggagtcgtcg agcagcaact ggttttctgc cagttggatg gggaacagac ggcctggaac
    21661 agctttcaga tttgccagcc ccgctttgat agcatcaagc gttgcgccca cggacatgga
    21721 gagcgcagcg gctgccagcg cattcgcaat attgtgacgc cccggcaacg gcagcagaac
    21781 atcgacgcta ccggttgggg tttgtagggt aaattccgta ccgtgcgagg tcacatggat
    21841 attggtggcg gtgaaatcgc tgttggcggc attgggtgag aaacgccaca ctttgcgtga
    21901 gccaattacg ctctgccagt tcagccagtc gttgttgtcg gcgttcataa tggcgatacc
    21961 gttttccggc aggccgctaa agatttcacc tttcgctttc gcgacacccg caagcgagcc
    22021 aaaaccttcc agatgcgccg ctgccaggtt gttgaccagc gcagcttccg ggcgagtcag
    22081 actcacagtc caggctattt cgccctgatg gttcgcgcca agttcaataa ctgcgtaatc
    22141 gtattccggc gttaagcgca acaacgtcat cggtacaccg atgtcgttgt tgagattgcc
    22201 tgccgtataa agcgtgttgc cgcactggct taaaatcgcc gccgtcatct ctttaacgga
    22261 ggttttgccg gaggaacctg tcagagcaac cacgcgcgcc ggaacttgct ggcgaaccca
    22321 tgcagccagt tcaccaaacg ccagacgcgt atccttgacg attaactgcg gcaggtcgat
    22381 atccagcgga cggctgacca gtagtgcgcc cgcgccgcca gctttcgcct ggtcggcaaa
    22441 atcgtgggca tcaaaacgtt cgcctttcag ggcaacaaac aggcagcccg gcgtcagttt
    22501 tcgggtatca gtggttacag catcaagggt gatatctgca ccttgcagtt caccattgag
    22561 aatgtcggta agttggctaa gggttacgct aatcatgcaa tcacccccag cagacgcgcc
    22621 accgtgacgc gatcggagta gtccagacgc tgattgccaa caatctggta atcttcatgg
    22681 cctttgcccg cgaccagcac cacatcgttc tctttagcct gcataacggc gcaagtcacc
    22741 gcttcagcac ggccttccat cactttggca tgtccggcat ctaacattcc cgccagaata
    22801 tcgttgatga tggcacgcgg ttcttcggta cgcgggttat cgtccgtcac caccgccacg
    22861 tcagcaaact cttcggcaat tgcgcccatc agtggacgct tacctttatc gcgatcgcca
    22921 ccacagccaa agacacacca cagcttgccc gcacagtgca gacgcgccgc ctgtaaggct
    22981 ttttccagtg catccggcgt atgcgcgtaa tccaccacca ccgtcggttt gcctggcaca
    23041 gtgaacactt ccatacgtcc gcaaaccggt tgcagacgcg cggcggtttt caacagatca
    23101 gccaatggat agccgagtgc caacagtgtc gccagcgcga gcagcaggtt gctgacgtta
    23161 aaagcgccta tcagatggct ttcaatttcg ccatcgcccc aacttgagct aaagcgaatc
    23221 gtcacaccgc tgtcgtgata gttcacgtcg atcactttta accagcgtcc gtgacagttc
    23281 ggattaatat gatcttccat tgataccgca accgcgtccg gcagctttgc cagccaacgg
    23341 cggcccactt catcgtcggc gttaataatc gcctgaccgc aatgatgttc agaataaagc
    23401 agccatttcg cagcttcgta gtgttccata tcaccatgat aatcaaggtg atcgcggctt
    23461 aagttggtaa agaccgacgc cgcaaatttc aatgccgcca cacggtgctg taccagcccg
    23521 tgggaggaaa cttccattgc gcaaaacgtc gcgccctgct ccaccagccc cgccagctca
    23581 tgctgaacat cgactgccga accggtggta ttttctgtcg ggatcacttt ccccagcaga
    23641 ccgttaccaa cggtgcccat taccgcgctg gtttcgccaa gcagttggct ccactgcgcc
    23701 agcagctggg tagtcgtggt tttgccgttg gtgcccgtta cgcctacgag acgtaaattg
    23761 tcagagggtt catggtaaaa gcggcccgcc agtgcagata aacgctcgtt gagctggctg
    23821 agatagatga ccggtacgcc gtgcatttca cggatttcac cgtcggtcgc ctcatctttc
    23881 gcctctgcaa taatggcagc cacaccttgc gctatcgcct gcgggatata tcgacgcccg
    23941 tccgcctgat gacctactac agctacaaag agatcgcccg ccgcagccac acggctgtcg
    24001 agtgtcatct ctcgcagtgc tcgcgaaggt gcgtctggca cccacggagc aagaaggtcg
    24061 cgcaaattac gatctgccac ctgtcccctc gccttgatta atcacaaatt catttttatc
    24121 gcccgttgtc agcgcatccg gctcgatgtt catggtacgc aatacgccgc ccatgatggc
    24181 accaaagacc ggcgcggaaa cggcgccgcc gtagtattta cccgcctgcg gatcgttgat
    24241 aacaacaacc agcgcgaagc gcggctgact cgcaggcgca acgcctgcgg tataagcaat
    24301 atatttattg atgtagcgac cgtccggccc gacctttttc gcggtaccgg ttttaatggc
    24361 gatacgatag cctttaatcg ccgccttcac gccgccgccg cccggtagcg ccacgctttc
    24421 catcatatgc accacggtgc ggacaatgga ttccgggaag acacgttcac cgggaaccgg
    24481 ggggtcaact ttggtaatcg acagtgggcg ataaatgccg tagctgccga tagttgcgta
    24541 gactcgcgct aactgtaacg gtgttaccat tagcccgtag ccgaaagaga aggtggccct
    24601 ctctatgtca gaccaccgtt gtttttgagg atataagcca ctgcgttctc cgaccaaccc
    24661 caaattggtc gcttttccca gtccaaaacg tgagtaagta tctactaacg ctgaggacgg
    24721 catcgctaac gccagcttgg aaacaccgac gttactcgac ttctgtaata ccccggtcag
    24781 ggttaattcg ctgtagcgtg ccacgtcttt gatttcgtgg ccgttaattc gataaggaat
    24841 ggtattgagt accgagtttt cccgcaccac gccacgttgc aacgcggtca tcaccaccat
    24901 cggtttaacc gttgagcccg gttcaaacac gtcggtgatg gtacggttac gcatcgcctc
    24961 tttcggcgtg ccgctcagat tgttagggtt gtatgacggg ctgttagcca tcgccagcac
    25021 ttcacctgtg ttgacatcca ccagcacggc gctaccagat tcagccttgt taaaggccac
    25081 cgcgttgttc agttcgcgat aaaccagcgc ctgcaggcgt tcatcaatac tcagcgccag
    25141 gttgtgcgct gcctggctgt cagtagaaga aatatcttca attacgcgac catagcggtc
    25201 tttacgcaca atgcgctcac ccggctgccc ggtaagccat ttatcgaaac tcttctcaac
    25261 gccctcaatc ccttgactat cgacgttagt aaagccaatg aggtgagcag tcacttcgcc
    25321 ggatggataa taacggcgag attcttcacg cagatgaata cccggcagtt tcagtttttt
    25381 gatgtagtcc gccatgtcag ggtttacctg acgcgccaga taaataaagc gccctttcgg
    25441 gttggcgtta atgcgggcag aaagctgatc cagcggaata ttgagcgcgt tagccagcgc
    25501 cttccagcgg tcaccgacgc tgataccgcc agcgtcatgc acttctttcg ggtcagccca
    25561 aatcgctttt accggcacgc tcaccgctaa cgggcgacca gaacggtcag taatcatgcc
    25621 gcgggaggtg gaaacttgct gaacgcgaag agaacgcatg tcgccctctt tcaccagcat
    25681 atccggggag ataacttgta accacgctac gcgtccgagc agaaaagcca gcgccaggag
    25741 aatacagccg cataacaacg caaaacgcca actaataaag ttggcatgtt cttcctgacg
    25801 ttttggtttc tgcgttttcg ccgctgcttt catgcgtcgc gtttatcctt atttttgcac
    25861 tacgatattt tcttgtgacg gatcaacatg ctgcatttgc agcttttccg tggcgatcct
    25921 ttccacccgg ctatggtcgc cgagcgcatt ctcttcaagg atcaggttgc gccattcaat
    25981 gtctaaagca tctcgctcca gcaccagttg ttcgcgctga gcggtcagta aacgggtatg
    26041 gtgcgccgtg gttaccacgg tcaccgccgt caaaataatg caaatgaaca ggcagagtgg
    26101 cagcttccca aatcgcaaaa gatcgtcacc gataacacca ggcaatgcat ggcgctcgtg
    26161 gcttcccatc gatcctttaa ctttgcttag agcttctgtc actctgctga tcatgcgttc
    26221 gtcctctctg cgatacgcag aactgaacta cgggcacgag gattctcagc cacctcttct
    26281 tcgcccggca ttaacttgcc taatgctcgc agctgacggc cacccagttt tttgagctgc
    26341 tcttcagtca tcggtaaccc tgccggaact tgcggaccgc ggctgttttc acgcataaaa
    26401 cgtttcacaa tacggtcttc cagcgagtgg aagctgatga tcgaaagccg cccacccggg
    26461 gccagcacgt tgagcgagct ttttagcgcc tgctctatct cctccagttc actgtttacc
    26521 caaatgcgca ccgcctggaa ggtacgggtc gcgggatgtt taaacttatc tttcaccggc
    26581 gttgcagcag ccacgacttc cgccagttct ttggtgcggg tcatcggctg ttcgcggtta
    26641 cgctcgacaa tggcgcgggc aatgcgtttg gcaaaacgct cttcaccata ggttttcaat
    26701 acccaggcga tatcggcttc ttctgcggtt tgtagccatt cagcggctga ctgcccacgg
    26761 gttgggtcca tacgcatgtc cagcggacca tcgcgcataa aggaaaagcc acgttcagca
    26821 tcatcaagtt gcggtgaaga gacgccaaga tcgaggagaa tgccgtcgat cttgccgata
    26881 agatcgcgct cggcaacgta ttcgcccagc gcggagaaag gtccgtggat gatggagaag
    26941 cgcggatcat caatagtctt cgcaacggcg atagcctgcg ggtcgcgatc gatcgccagc
    27001 aaacgcccct cttcgccaag ctgcgagagg atcagacgtg agtgaccacc gcgaccaaaa
    27061 gtcccatcaa tgtagatgcc atcaggacgg atattgaggc cattaacggc ttcatccagc
    27121 agcaccgtag tatgtttata gttttccatc attttataga gacaagtcct gcagtcgctc
    27181 cgataagtct ccagtagcca actgctctgc gtcgatatct tccttgacct gttgatgcca
    27241 agttgtttca tcccacagct caaacttgtt gaactgtcca accagcatca cttcttttgt
    27301 cagcccggca tgttgccgca gtactggcgc gattaacaat cgacctgcgc catccatctg
    27361 acattcgctg gcatgaccta acagtaggcg ctgcacacgg cgctcaactg ggttcatgct
    27421 cgacagacgc gataattttt gctcgataat ttcccattca ggcagggggt aaagcagcag
    27481 gcacgggtga tgaatgtcaa tggtgcaaac catttgaccg gcagcgttct caagcagctg
    27541 ttcccgataa cgggtaggca ctgataagcg ccctttgctg tcgagattga ctaacgttgc
    27601 tccccggaac atgccagcct caccccttat tcccactttg ccccacaatt tcccactgaa
    27661 aggagtttac ggagcggagg aaaagcttgt caagccagtc acaaggcata ccgaggtaaa
    27721 aaacccgatg tttacggcta atatcagcgt tgtttatttt acgtccaacg cgcgaagcaa
    27781 attaacgtta tgaatagctg taagaaaaaa tccctcatcg tcatcactgt tttaaaatga
    27841 ctcactattt tccacagcaa atataaagtg tcagtttgcg acgcgagcgg cattttagga
    27901 catatcttcc ccggttaaca gtccttgtta cgtctgtgtg gcgcttgatg ccagcgggtt
    27961 tgcgcaaaag caaagaaaag tgtttgttaa atcggcaatt catcgccgca tgtaacaaaa
    28021 taatgcaaaa acgcgctgtc gatatcactt aattattgtg aatttcagct ggtgagttaa
    28081 ttaacgggcg ggtttaaaac catttatcaa taatagtcag gaatagtctt atttacttta
    28141 agcatattga tgtccagtcc cgtactctac gcgccagagg gaaattcacc tggcgcgtat
    28201 ttttgttcgc ggcttagcta cggctgagca caccgcggcg atagagatta cgtttaatgc
    28261 gcgttaaacc aggttttggc ttacgcggtt cgtccaggct tgccaggaca atctccagca
    28321 cacgctctgc gacatcgcgg tgacgttgag ccactgccag caccgggcac tgtaagaagt
    28381 cgagcagttc gttatcgcca aaggtggcaa ttgccaggtc agaaggcagt ttaccatcgc
    28441 gacgtagcgt gacatccatc accccttgca acaacgcaaa cgacgttgtg aacagcgcct
    28501 gcggcatcag atgcgtttcc agccattttt cgaataactg ggcagccgcc tcccgctcat
    28561 agctgttggc atacaggaaa tgcacttcgc gcggatcatc tttccaggca gtacggaaac
    28621 cttgttcacg caggaagctg acagaaagct ccggcagcgc gccaagataa agcaccgtct
    28681 cggcgggaaa cttacgtaac tcttccgcca gcatttcggc atcatcctga tcggcaccaa
    28741 ccacgctggt gaaatgttca cgatcgaggg cgcggtccag cgcgacaatc gggaacgggg
    28801 cgttagccca gcgttgataa aaaggatgct caggtggcaa cgacgtcgaa acaataatgg
    28861 catcaacctg acgctgtaaa aggtgctcaa tgcagcgcat ttcgttgtct ggctgatctt
    28921 ctgagcaggc aatcagcagt tgataacccc gttgccgcgc ctggcgctca agatagttag
    28981 cgatgcgggt atagctggtg ttctccagat cggggatcac aagaccaata gaacgtgtgc
    29041 gtccagcacg aagcccagct gccacggcgt tcgggtggta attgtgctca cgcaccacag
    29101 ccatgacttt ttcaacggtt ttgtcgctca cacggtattg cttcgctttg ccgttaataa
    29161 catagcttgc agtggtccgc gacactcccg ccagccgagc gatttcatcc agtttcacaa
    29221 ttgccccttg cgtaaaatgt aaaaaccata gccattgtac tggtatgggt taaattcatt
    29281 aacatctaag cgcagaaaat taactgcggc aactgctttt attccaggtt cccactgatt
    29341 tcgcaaaaaa agcccagcgt gacatgttgg gctgcaaatt gcacactgag atcattctca
    29401 acgcattatt ttatcgccgc gcgaaagtcc gaccacacca gagcgagcaa cttccacaat
    29461 tttcgccacc tcgcgaatcg atgctaaaaa tgcatcaagc ttatcgctgg tgcctgctaa
    29521 ttgaacggta taaagcgagg gggtgacatc gataatttgc ccacggaata tttccgtatt
    29581 acgtttcact tcgtcacgcc cgtaaccgct ggcctgaatt ttcaccagca taatttcccg
    29641 ctcaacatgc gcgccctgcc ccaactcact cacgcgcaag acatcgacca gcttgtgtaa
    29701 ttgcttttcg atctgctcaa gtactttttc atcgcccacg gtctggatgg tcatacgcga
    29761 taatgtcgga tcgtcggttg gcgcaacggt caggctttca atgttgtagc ctcgctggga
    29821 aaaaaggcca atcacgcggg ataacgcgcc tgattcattt tcgagtaaga ctgataatat
    29881 ccggcgcata atcaggttct ctccgttttg cttaaccaca tttcatccat tccgcccccg
    29941 cgaatctgca tcgggtagac gtgctcactg ccatcgacgg taacatcaac aaacaccagg
    30001 cgattattgc gcacctgttc cagcgcctcg ctaagtttgc tttccagctc atgcggatga
    30061 gagatctgga tcccgacgtg accataggct tccgccagac ggacgaaatc gggtagtgat
    30121 tgcatataag attgtgaatg acggccggaa tagatcatgt cctgccactg tttcaccatc
    30181 cccagatagc ggttattgag attcaccacc agtacgggca actcgtattg caacgcggta
    30241 gacagttcct gaatgttcat ctgaatactg ccgtcgccag tgacgcaaac cacggtttct
    30301 tctggcaacg ccattttgac gcccagtgcc gcaggtaaac caaaacccat cgtgccgagg
    30361 ccaccggaat tgatccagcg acgcggtttg tcgaatggat aataaagtgc agcaaacatc
    30421 tggtgctgcc cgacatcgga cgtcacgtaa gcgtctccct tcgtcaaccg ccaaagagtc
    30481 tcgatcaccg cctgcggttt aatcttttca ctgtgagtgt catatttcag gcactgacga
    30541 gcgcgccact gttcaatttg ctgccaccag tcgcggatct catccagtgg ttgatgggcg
    30601 gattcttgcg acaagagttc aagcatttgt tcgaggacct ggcgagcatc ccccacaatc
    30661 gggatatccg cagtcacggt tttagaaatg gaagtaggat caatatcgat atgcagaaca
    30721 gtggcatttg ggcagtactt tgccagattg ttcgtcgttc ggtcatcaaa tcgtaccccg
    30781 acggcgaaaa tcacatccgc gttatgcatc gtcatattgg cttcgtaggt accgtgcatt
    30841 cccagcatgc ccagtgcctg acgatgcgtt gccggaaacg cccccagccc catcaatgag
    30901 gaaacaacgg gcagattcaa cgcctccacc gtttctttca actgctgatg gcagcccgcc
    30961 atgattgccc caccgcctac gtagacaacc ggtttttttg ccactaccag cgtttgcaga
    31021 gcacgcttaa tttgcccttt atgtccggta gtagtgggat tgtaagaacg catactgacc
    31081 gactccggcc agacataggg taatttgttc gccggattaa gaatatcttt cggtaaatca
    31141 acgactactg gtccaggacg accacttgcc gccagccaga aagccttttt cagcacctgc
    31201 ggaatgtctt ccgtttgctt aaccagaaaa ctgtgtttaa ccactggtcg cgaaatcccc
    31261 accatgtcgc actcctgaaa ggcatcgtaa cctatcaacg aggtcgctac ctgcccggaa
    31321 aggacaacta atggaatgga atccatataa gcggtggcga tgccggtaat cgcattggtc
    31381 gcccctggac ccgacgttac cagcacgacg ccgacttccc cggtcgcgcg cgccagacca
    31441 tcggccatat gcactgccgc ctgctcatga cgaactaaaa catgatcgat accacccacg
    31501 gtatgcaatg catcgtaaat atcaaggact gcgcctccag gataaccgaa tacttgttta
    31561 acgccctgat cgataagcga tcggacgacc atctcggctc cagacaacat ctccatggcc
    31621 tgcctcactg tttgatggaa aaaatgtgta aaacacatta accgtccgat cttgcttaag
    31681 caattggcag ccagagacat aaacgcaggg taataagaat aaacaggagg aaagatgaaa
    31741 agaaacgata aaatcctcca ttacgaagga ttaaattgat aataaatcgg ctgaatccca
    31801 caacttacag caatttctct atttttttaa ttaatcctaa aatagagagc ccacacattc
    31861 agaataaaat tctacattca ataaaaaatg cagaataaac cagacattca tgtctgacct
    31921 attctgcatt cagttagcgt ttgcaaattg agactaattg ttcttccatc cactgatggc
    31981 ctttatcgcg cccggcagct tcatgccatg agagataaca ggttctgctg ttttgtttta
    32041 acggcagcgg taatacctgt aattctaagg attcagcgaa ctcttcagcc agccaacgcg
    32101 gcgcaatagc gaccaaatgc gtttgcgaca ccacgctaag tacgctcatc attgccatgc
    32161 cctgatacgc gatactggct tgcttatcta ccgtgtcata ccaaggttga ctaaatgacg
    32221 cgaaacgatc gagcgaaacc gccgcatgtt gttcgttata aacatcatgt ttcagtaacg
    32281 ggcctttaat tgttggatga tttttgctgg ctaccagcac catttcatct ttaaataatg
    32341 gcacgctggt aaattcagga cgatggaagt cttcataact aatcacaaac tccgtttcct
    32401 gataacgcag ctgatgttca gtgttctgat ttaatgaaga cttgaacata acatgtatat
    32461 ttggcgcaat ctgctcaatg tgattataaa tctgcgaggt cagaatgctg tctaacgggc
    32521 tgcaaacaca aagatgaaat acacgttcac tactcgcggg ttcaaaacct gaaccaggca
    32581 attcattttg tactagttgc aatgcctggc gaactgaacc aaaaagttga aatgcgcgag
    32641 cagtcggttg aataccacgg ccataacgaa caaaaagctc gtcattaaac atcaccttca
    32701 ggcgtgcaac agcgttactg accgcaggtt gcgacatacc cagaacatga gcggcacggg
    32761 taatgttttg ctcctgcatc acggcatcga aaacggttaa taagttgaga tcgaccatgc
    32821 gtagctgtgg cttgcttaac tccgccgtct ctgaatgatc tgtttgtacc tctggcatac
    32881 ttaactccac tgtcacactt aactcccttt cccttattgg aatgcagaga aataatcctg
    32941 aagaatatga tttatc
//
LOCUS       DADMJB010000026        32487 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.026, whole genome shotgun sequence.
ACCESSION   DADMJB010000026 DADMJB010000000
VERSION     DADMJB010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 32487)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32487)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32487
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.026"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            196..990
                     /gene="panB"
                     /locus_tag="JN078_001116"
     CDS             196..990
                     /gene="panB"
                     /locus_tag="JN078_001116"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HAY9040393.1"
                     /translation="MKPTTIASLQKCKQDKKRFATITAYDYSFAKLFADEGLNVMLVG
                     DSLGMTVQGHDSTLPVTVADIAYHTASVRRGAPNCLLLADLPFMAYATPEQAFENAAT
                     VMRAGANMVKIEGGEWLVETVKMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAG
                     DQLLSDALALEAAGAQLLVLECVPVELAKRITEALAIPVIGIGAGNVTDGQILVMHDA
                     FGITGGHIPKFAKNFLAETGDIRAAVRQYMAEVESGVYPGEEHSFH"
     gene            1002..1853
                     /gene="panC"
                     /locus_tag="JN078_001117"
     CDS             1002..1853
                     /gene="panC"
                     /locus_tag="JN078_001117"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HAY9040394.1"
                     /translation="MLIIETLPLLRQQIRRLRMEGKRVALVPTMGNLHDGHMKLVDEA
                     KARADVVVVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKRKVDLVFAPSVKEIYPNG
                     TETHTYVDVPGLSTMLEGASRPGHFRGVSTIVSKLFNLVQPDIACFGEKDFQQLALSR
                     KMVADMGFDIEIVGVPIMRAKDGLALSSRNGYLTAEQRKIAPGLYKVLSSIADKLQAG
                     ERDLDEIIAIAGQELNEKGFRADDIQIRDADTLLEVSETSKRAVILVAAWLGDARLID
                     NKIVELA"
     gene            complement(2145..3041)
                     /locus_tag="JN078_001118"
     CDS             complement(2145..3041)
                     /locus_tag="JN078_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /protein_id="HAY9040395.1"
                     /translation="MDAPSTTPHDAVFKQFLMHAETARDFLEIHLPVELRELCDLNTL
                     HLESGSFIEESLKGHSTDVLYSVQMQGNPGYLHVVIEHQGKPDKKMAFRMMRYSIAAM
                     HRHLEADHDKLPLVVPILFYQGEATPYPLSMCWFDIFYSPELARRVYNSPFPLVDITI
                     TPDDEIMQHRRIAILELLQKHIRQRDLMLLLEQLVTLIDEGYTSGSQLVAMQNYMLQR
                     GHTEQADLFYGVLRDRETGGESMMTLAQWFEEKGIEKGIQQGRQEERQEFAQRFLSKG
                     MSREDVAEMTNLSLAEIDRLIN"
     gene            3315..3695
                     /gene="panD"
                     /locus_tag="JN078_001119"
     CDS             3315..3695
                     /gene="panD"
                     /locus_tag="JN078_001119"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HAY9040396.1"
                     /translation="MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAI
                     DIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWR
                     PNVAYFEGDNEMKRTAKAIPVQVA"
     gene            complement(3699..4899)
                     /locus_tag="JN078_001120"
                     /pseudo
     CDS             complement(3699..4899)
                     /locus_tag="JN078_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000899461.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
     gene            complement(4994..5434)
                     /locus_tag="JN078_001121"
     CDS             complement(4994..5434)
                     /locus_tag="JN078_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HAY9040397.1"
                     /translation="MLGWVITCHDDRAQEILDALEKKHGALLQCRAVNFWRGLSSNML
                     SRMMCDALHEADSGEGVIFLTDIAGAPPYRVASLLSHKHSRCEVISGVTLPLIEQMMA
                     CRETMTSSEFRERIVELGAPEVSSLWHQQQKNPPFVLKHNLYEY"
     gene            complement(5539..6309)
                     /locus_tag="JN078_001122"
     CDS             complement(5539..6309)
                     /locus_tag="JN078_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAY9040398.1"
                     /translation="MMHLYWVALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGN
                     LIGSRIGDMHGFSYMQFIVPGLIMMSVITNAYANVASSFFGAKFQRNIEELLVAPVPT
                     HVIIAGYVGGGVARGLFVGILVTAISLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLN
                     GVFAKTFDDISLVPTFVLTPLTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGF
                     LGINDVPLATTFGVLVVFIVVFYLICWSLIQRGRGLRS"
     gene            complement(6306..7232)
                     /locus_tag="JN078_001123"
     CDS             complement(6306..7232)
                     /locus_tag="JN078_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAY9040399.1"
                     /translation="MTIALELQQLKKTYPGGVQALRGIDLQVEAGDFYALLGPNGAGK
                     STTIGIISSLVNKTSGRVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQ
                     AGYYGVERKEAYIRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLIL
                     DEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENT
                     SMKALLAKLKLETFILDLAPKSPLPKLDGYQYRLVDTATLEVEVLREQGINSVFTQLS
                     EQGIQVLSMRNKANRLEELFVSLVNEKQGDRA"
     gene            7341..8003
                     /gene="can"
                     /locus_tag="JN078_001124"
     CDS             7341..8003
                     /gene="can"
                     /locus_tag="JN078_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonate dehydratase"
                     /protein_id="HAY9040400.1"
                     /translation="MKDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPHFLWIGCSD
                     SRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHYGCG
                     GVQAAVENPELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYNLGH
                     STIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNRETLEQRYRHGISNLKLKHAN
                     HK"
     gene            complement(8044..8580)
                     /gene="hpt"
                     /locus_tag="JN078_001125"
     CDS             complement(8044..8580)
                     /gene="hpt"
                     /locus_tag="JN078_001125"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308156.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HAY9040401.1"
                     /translation="MKHTVEVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRG
                     SFMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDII
                     DSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDY
                     AQRYRHLPYIGKVILLDE"
     gene            8786..11176
                     /locus_tag="JN078_001126"
     CDS             8786..11176
                     /locus_tag="JN078_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone-dependent
                     dehydrogenase"
                     /protein_id="HAY9040402.1"
                     /translation="MAINNTGSRRLLVTLTVLFAALCGLYLLIGGGWLVAIGGSWYYP
                     IAGLVMLGVAWMLWRSKRAALWLYAALLLGTMIWGVWEVGFDFWALTPRSDILVFFGI
                     WLILPFVWRRLVIPASGAVAALVVALLISGSILTWAGFNDPQEINGTLSADATPTEAI
                     SPVADQDWPAYGRNQEGQRFSPLKQINADNVHNLKEAWVFRTGDVKQPNDPGEITNEV
                     TPIKVGDTLYLCTAHQRLFALDAASGKEKWHYDPKLKTNESFQHVTCRGVSYHEAKAE
                     TASPEVMADCPRRIILPVNDGRLIAINAENGKLCETFANKGVLNLQSNMPDTKPGLYE
                     PTSPPIITDKTIVMAGSVTDNFSTRETSGVIRGFDVNTGELLWAFDPGAKDPNAIPSD
                     EHTFTFNSPNSWAPAAYDAKLDLVYLPMGVTTPDIWGGNRTPEQERYASSILALNATT
                     GKLAWSYQTVHHDLWDMDLPAQPTLADITVNGQKVPVIYAPAKTGNIFVLDRRNGELV
                     VPAPEKPVPQGAAKGDYVTPTQPFSELSFRPKKDLSGADMWGATMFDQLVCRVMFHQM
                     RYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPNREVAIANPMALPFVSKLIPRGPGN
                     PMEQPKDAKGTGTESGIQPQYGVPYGVTLNPFLSPFGLPCKQPAWGYISALDLKTNEV
                     VWKKRIGTPQDSMPFPMPVPVPFNMGMPMLGGPISTAGNVLFIAATADNYLRAYNMSN
                     GEKLWQGRLPAGGQATPMTYEVNGKQYVVISAGGHGSFGTKMGDYIVAYALPDDVK"
     gene            complement(11223..12773)
                     /gene="cueO"
                     /locus_tag="JN078_001127"
     CDS             complement(11223..12773)
                     /gene="cueO"
                     /locus_tag="JN078_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HAY9040403.1"
                     /translation="MQRRDFLKYSVALGVASALPLWSRAVFAAERPTLPIPDLLTTDA
                     RNRIQLTIGAGQSTFGEKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHW
                     HGLEVPGEVDGGPQGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLV
                     VIEDDEILKLMLPKQWGIDDVPVIVQDKKFNADGQIDYQLDVMTAAVGWFGDTLLTNG
                     AIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVL
                     MGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALPDTL
                     SSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGN
                     MNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAKGQYERWVISGVGDMMLHPFHIHGT
                     QFRILSENGKPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDT
                     GMMLGFTV"
     gene            12939..13286
                     /locus_tag="JN078_001128"
     CDS             12939..13286
                     /locus_tag="JN078_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacC family pilotin-like protein"
                     /protein_id="HAY9040404.1"
                     /translation="MKTFFRTVLFGSLMAVCANSYALSESEAEDMADLTAVFVFLKND
                     CGYQNLPNGQIRRALVFFAQQNQWDLSNYDTFDMKALGEDSYRDLSGIGIPVAKKCKA
                     LARDSLSLLAYVK"
     gene            13391..14257
                     /gene="speE"
                     /locus_tag="JN078_001129"
     CDS             13391..14257
                     /gene="speE"
                     /locus_tag="JN078_001129"
                     /EC_number="2.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine aminopropyltransferase"
                     /protein_id="HAY9040405.1"
                     /translation="MAEKKQWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFG
                     RVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVE
                     SITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCT
                     DPIGPGESLFTSAFYEGCKRCLNPSGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGF
                     YQAAIPTYYGGIMTFAWATDNDALRHLSTEIIQARFLASGLKCRYYNPAIHTAAFALP
                     QYLQDALASQPS"
     gene            14273..15067
                     /gene="speD"
                     /locus_tag="JN078_001130"
     CDS             14273..15067
                     /gene="speD"
                     /locus_tag="JN078_001130"
                     /EC_number="4.1.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine decarboxylase"
                     /protein_id="HAY9040406.1"
                     /translation="MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYN
                     ANRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLP
                     ETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDI
                     VTIDYRVRGFTRDINGMKHFIDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKML
                     LKEFDLKHYMFHTKPEDLTDSERQEITAALWKEMREIYYGRNMPAV"
     gene            complement(15104..15466)
                     /locus_tag="JN078_001131"
     CDS             complement(15104..15466)
                     /locus_tag="JN078_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414661.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacL family protein"
                     /protein_id="HAY9040407.1"
                     /translation="MDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQ
                     AAHALKGSERSWQRAGHEYTLWMDGEEVMVRANQLEFAGDEMEEGMNYYDEESLSLCG
                     VEDFLQVVAAYRNFVQQK"
     gene            complement(15641..18238)
                     /gene="acnB"
                     /locus_tag="JN078_001132"
     CDS             complement(15641..18238)
                     /gene="acnB"
                     /locus_tag="JN078_001132"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HAY9040408.1"
                     /translation="MLEEYRKHVAERAAEGIAPKPLDANQMAALVELLKNPPAGEEEF
                     LLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKSPLLTPEKAIELLGTMQGGYNIHPL
                     IDALDDAKLAPIAAKALSHTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRP
                     ALAEKLTVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVG
                     PIKQIEALQQKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGG
                     KIAPIFFNTMEDAGALPIEVDVSNLNMGDVIDVYPYKGEVRNHETGELLATFELKTDV
                     LIDEVRAGGRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESDRGFSLAQKMVGRA
                     CGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPK
                     PVDVNTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISF
                     PAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVE
                     KKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNI
                     VLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADADAEYAAVIDIDLADIKEPIL
                     CAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRAAGKLLDAHKGQLPTRLWVAPP
                     TRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLG
                     TGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDTYRYLNFNQLSQYTEKA
                     DGVIFQTAV"
     gene            18593..20446
                     /locus_tag="JN078_001133"
     CDS             18593..20446
                     /locus_tag="JN078_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3300 domain-containing protein"
                     /protein_id="HAY9040409.1"
                     /translation="MKMTLPFKPHVLALICSAGLCAASAGLYIKSRTVEAAVETQSTQ
                     LAVSDAAAVTLPATVSAPPVTPAVVKSAFSTAQIDQWVAPVALYPDALLSQVLMASTY
                     PANVAQAVQWSHDNPLKQGDAAIQAVSDQPWDASVKSLVAFPQLMALMGENPQWVQNL
                     GDAFLAQPQDVMDSVQRLRQLAQQTGSLKSSNEQKVITTTKKAVPVKQTVTAPVIPSN
                     TVLTASPVITEPATTVISIEPANPDVVYIPNYNPTVVYGNWANTAYPPVYLPPPAGEP
                     FIDSFVRGFGYSMGVATTYALFSSIDWDDDDHDHHHHDDDDYHHHDGGHRDGNGWQHN
                     GDNINIDVNNFNRITGEHLTDKNMAWRHNPNYRNGVPYHDQDMAKRFHQTDVNGGMSA
                     TQLPAPTRDSQRQAAASQFQQRTHAAPVITRDTQRQAAAQRFNEAEHYGSYDDFRDFS
                     RRQPLTQQQKDAARQRYQSASPEQRQAVRERMQTNPQIQQRREAARERIQPASPEQRQ
                     AVREKMQTNPQIQQRRDAARERIQSASPEQRQVFKEKVQQRPLNQQQRDNARQRVQSA
                     SPEQRQVFRERVQESRPQRLNDSNRTARLNNDQRSAVRERLSERGARRLER"
     gene            complement(20517..21941)
                     /gene="lpdA"
                     /locus_tag="JN078_001134"
     CDS             complement(20517..21941)
                     /gene="lpdA"
                     /locus_tag="JN078_001134"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HAY9040410.1"
                     /translation="MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGV
                     CLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLA
                     GMAKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDP
                     RIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDI
                     VKVFTKRISKKFNLMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPN
                     GKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEV
                     IAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDC
                     ADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE
                     SVGLAAEVFEGSITDLPNPKAKKK"
     gene            complement(22266..24158)
                     /gene="aceF"
                     /locus_tag="JN078_001135"
     CDS             complement(22266..24158)
                     /gene="aceF"
                     /locus_tag="JN078_001135"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex
                     dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HAY9040411.1"
                     /translation="MAIEIKVPDIGADEVEITEILVKVGDKVEAEQSLITVEGDKASM
                     EVPSPQAGIVKEIKVSVGDKTQTGALIMIFDSADGAADAAPAQAEEKKEAAPAAAPAA
                     AAAKDVNVPDIGSDEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEI
                     KVNVGDKVSTGSLIMVFEVAGEAGAAAPAAKQEAAPAAAPAPAAGVKEVNVPDIGGDE
                     VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIM
                     IFEVEGAAPAAAPAKQEAAAPAPAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLIR
                     RLAREFGVNLAKVKGTGRKGRILREDVQAYVKEAIKRAEAAPAATGGGIPGMLPWPKV
                     DFSKFGEIEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITELEAFRKQQNEEAAK
                     RKLDVKITPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYINIGVAVDTPNGLVV
                     PVFKDVNKKGIIELSRELMTISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVN
                     APEVAILGVSKSAMEPVWNGKEFVPRLMLPISLSFDHRVIDGADGARFITIINNTLSD
                     IRRLVM"
     gene            complement(24173..26836)
                     /gene="aceE"
                     /locus_tag="JN078_001136"
     CDS             complement(24173..26836)
                     /gene="aceE"
                     /locus_tag="JN078_001136"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HAY9040412.1"
                     /translation="MSERFPNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEA
                     RKGGVNVAAGTGISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDL
                     ELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQ
                     EQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLK
                     DTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKII
                     NELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYV
                     REHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVILAHSI
                     KGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHT
                     YLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLK
                     NKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQIL
                     QEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFL
                     IGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEK
                     QENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETIEGSKGKVQLLGSGSILRHVR
                     EAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMNDAPA
                     VASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGE
                     LAKRGEIDKKVVADAIAKFNIDADKVNPRLA"
     gene            complement(26997..27761)
                     /gene="pdhR"
                     /locus_tag="JN078_001137"
     CDS             complement(26997..27761)
                     /gene="pdhR"
                     /locus_tag="JN078_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex transcriptional
                     repressor PdhR"
                     /protein_id="HAY9040413.1"
                     /translation="MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQF
                     DVSRPSLREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQYDLLE
                     TRHALEGIAAYYAALRSTDEDKERIRELHHAIELAQQSGDLDAESNAVLQYQIAVTEA
                     AHNVVLLHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAR
                     EASHRHLAFIEEILLDRSREESRRERSLRRLEQRKN"
     gene            28302..29675
                     /gene="aroP"
                     /locus_tag="JN078_001138"
     CDS             28302..29675
                     /gene="aroP"
                     /locus_tag="JN078_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transporter AroP"
                     /protein_id="HAY9040414.1"
                     /translation="MMEGQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSA
                     GPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVL
                     YVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIK
                     VIAVVAMIIFGGWLLFSGNSGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLE
                     LVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIF
                     HELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPV
                     NTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQG
                     VVTRFPALLYPLGNWICLLFMAAVLVIMLMTPGMAISVYLIPVWLIVLGIGYLFKEKT
                     AKAVKAH"
     gene            complement(29718..30572)
                     /gene="ampE"
                     /locus_tag="JN078_001139"
     CDS             complement(29718..30572)
                     /gene="ampE"
                     /locus_tag="JN078_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase regulator AmpE"
                     /protein_id="HAY9040415.1"
                     /translation="MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTL
                     GMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRND
                     SHARVTMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGIWGPV
                     TLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKAL
                     PAWFASLGDFHTSQYQVLTRLAQFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIAL
                     LTIYGALV"
     gene            complement(30569..31120)
                     /gene="ampD"
                     /locus_tag="JN078_001140"
     CDS             complement(30569..31120)
                     /gene="ampD"
                     /locus_tag="JN078_001140"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HAY9040416.1"
                     /translation="MLLEQGWLVGARRVPSPHYDCRPDDETPTLLVVHNISLPPGEFG
                     GPWIDALFTGTIDPQAHPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSQY
                     QGRERCNDFSIGIELEGTDTLAYTDAQYQQLAAVTRALIDRYPDIANNMTGHCDIAPD
                     RKTDPGPAFDWARFRALVSKETT"
     gene            31208..32101
                     /gene="nadC"
                     /locus_tag="JN078_001141"
     CDS             31208..32101
                     /gene="nadC"
                     /locus_tag="JN078_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HAY9040417.1"
                     /translation="MPPRRYNPDTRRDELLERINLDIPGAVAQALREDLGGTVDANND
                     ITAKLLPENSRSHATVITRENGVFCGKRWVEEVFIQLAGDDVTIIWHVDDGDVINANQ
                     PLFELEGPSRVLLTGERTALNFVQTLSGVASKVRHYVELLEGTNTQLLDTRKTLPGLR
                     SALKYAVLCGDGANHRLGLSDAFLIKENHIIASGSVRQAVEKASWLHPDAPVEVEVEN
                     LEELDEALKAGADIIMLDNFETEQMREAVKRTNGKALLEVSGNVTDKTLREFAETGVD
                     FISVGALTKHVQALDLSMRFR"
     gene            32304..>32487
                     /locus_tag="JN078_001142"
     CDS             32304..>32487
                     /locus_tag="JN078_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HAY9040418.1"
                     /translation="MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQ
                     TFVPYRTAVELCALEHG"
BASE COUNT         7833 a         8834 c         8003 g         7817 t
ORIGIN      
        1 ccacgctaca acaggatgga actataccaa tagaagctgg tgagtttaaa gccaccagta
       61 ctttccaggt aacctaccct taataagtcc accgcaccgc catcatctgg cggtgcggta
      121 attgataaat cattgccccc accaatgtga ctgataaaat gccaggcaac acgacatcat
      181 ttatcaggac acgttatgaa accgaccacc attgcttcac ttcagaaatg taagcaggat
      241 aaaaagcgtt tcgcgaccat caccgcttac gactacagct tcgcgaaact atttgctgat
      301 gaaggactta acgtcatgct ggtaggcgac tcgctgggca tgacggttca gggtcacgac
      361 tccaccctgc cggtgaccgt tgccgatatc gcctaccaca ctgcctccgt acgtcgtggt
      421 gcgccaaact gcctgctgtt ggctgacctg ccgtttatgg cgtatgccac gccggaacaa
      481 gcctttgaaa acgccgcaac ggttatgcgt gccggtgcca atatggtcaa aattgagggc
      541 ggtgagtggc tggtcgaaac cgtaaaaatg ctgaccgaac gtgccgttcc tgtatgtggt
      601 cacttaggtt taaccccaca gtcagtgaat attttcggtg gctacaaagt tcaggggcgc
      661 ggcgatgaag cgggcgatca actgctcagc gatgcattag ccttagaagc cgctggggca
      721 cagctgctgg tgctggaatg cgtgccggtt gaactggcaa aacgtattac cgaagcactg
      781 gcgatcccgg ttattggcat tggcgcaggc aacgtcactg acgggcagat cctcgtgatg
      841 cacgacgcct tcggcattac cggcggtcac attcctaaat tcgctaaaaa tttcctcgcc
      901 gaaacgggcg acatccgcgc ggctgtgcgg cagtatatgg ctgaagtgga gtccggcgtt
      961 tatccgggcg aagaacacag tttccattaa ggagtcacgt tgtgttaatt atcgaaaccc
     1021 tgccgctgct gcgtcagcaa attcgccgcc tgcgtatgga aggcaagcgc gtggcgctgg
     1081 tgcctactat gggtaatctg cacgatggcc atatgaagct ggtcgacgaa gccaaagccc
     1141 gcgccgatgt ggtcgtcgtc agtattttcg ttaacccgat gcagttcgac cgcccggaag
     1201 atctggcacg ttatccacgg accttgcagg aggactgcga gaagctaaac aaacgtaaag
     1261 tggatttagt tttcgcccct tcggtaaaag agatctaccc gaacggtact gaaacccata
     1321 cttacgttga cgttcccggg ctttcgacca tgctggaagg cgcgagccgt ccggggcatt
     1381 ttcgcggcgt ttcgactatc gtcagcaagc tgtttaacct ggtccagccg gacatcgcct
     1441 gcttcggtga aaaggacttt cagcaactgg cgctaagccg caaaatggtt gccgatatgg
     1501 gcttcgatat tgaaattgtc ggcgtcccga ttatgcgcgc caaagatggc cttgcgctca
     1561 gttcccgtaa tggttatctg acggcggaac aacgcaaaat tgcgcccggt ctgtacaaag
     1621 ttttaagttc aattgccgac aaattgcagg ctggcgagcg ggatcttgat gaaattattg
     1681 ccattgcagg gcaagaactg aatgaaaaag gcttccgcgc cgatgatatt cagattcgcg
     1741 atgccgacac gttgctggaa gtctctgaaa ccagcaaacg agctgtaatt ctggtagccg
     1801 cctggcttgg cgatgcccgc ctgatcgaca acaaaatcgt cgaactggcg taatgctttt
     1861 actctaaata attcaagttg caggaaggcg gcaagcgagt gacaaattcg tcaggaacga
     1921 atttgcccag ccgcaggctg gccttcggtg agagacatgg atgtctctca ttaatcccca
     1981 ggagcttaca taagtaagtg actggggtta gcgaacgcag acacagcaca tgcaatttaa
     2041 agtatgacga gtataactgg cgctacggct gatggcgcca attattaatt tgccccacgt
     2101 catggcgatg gcgtctgtaa gcaattattc ataacgcaga caacttagtt aatcagccta
     2161 tcaatctcag caagagataa atttgtcatc tctgcaacgt cttcccgaga catcccttta
     2221 ctcagaaaac gctgggcgaa ttcttgcctt tcctcctgtc ttccctgctg aatccccttc
     2281 tcaatccctt tctcttcaaa ccactgcgcc agcgtcatca tagactcccc tcccgtttcc
     2341 ctgtctctca gcacaccata aaacaaatcc gcttgttcag tatgaccgcg ttgcagcata
     2401 tagttttgca tggcaactaa ctgacttccg ctagtgtacc cttcgtcaat cagcgtgacc
     2461 agttgctcca gcaataacat taagtcgcgc tggcgaatat gtttttgcag tagttcgaga
     2521 atcgcaatcc gccgatgttg catgatttcg tcatccggtg tgatggtgat atccaccagc
     2581 gggaaaggac tgttatagac gcgtcgtgcc agctccggcg agtaaaatat atcaaaccag
     2641 cacattgaga gcggataagg tgtggcctcg ccctgataaa acagtatcgg caccaccagc
     2701 ggcagcttat cgtgatccgc ctccagatgc cggtgcatgg cagcaataga ataacgcatc
     2761 atgcgaaagg ccattttctt atccggcttg ccttggtgtt caatcacaac atgcagataa
     2821 ccgggattgc cctgcatttg cacggaatag agcacgtccg tgctgtgtcc tttcaggctc
     2881 tcttcaatga aactccccga ctctaaatga agcgtgttga ggtcacaaag ttctcgtaat
     2941 tccactggca aatgtatctc cagaaagtcg cgagccgtct ccgcgtgcat taaaaattgt
     3001 ttaaacactg catcatgcgg tgtggtactc ggtgcatcca tcttccctgc cttccgtgtt
     3061 gtcttgcgtg aaggcagtat ccagtcaagg cgtgccatcg tcagccacct ctttagtgtt
     3121 taccgagcag cgttcagaga aatttcaatt ggttacagcc gttacatggc acgcttcggc
     3181 acggtacgca aactgctgat gtaaatgccg tcagatgagt agacactaaa caaaaatcgg
     3241 gcaatactgc gtgagaattt cctcaaagca ggcatcgcct gcttcgttaa cgacagggta
     3301 gaaaggtaga agttatgatt cgcacgatgc tgcagggcaa actccaccgc gtgaaagtga
     3361 ctcatgcgga cctgcactat gaaggttctt gcgccattga ccaggatttt cttgacgcag
     3421 ccggtattct cgaaaacgaa gccattgata tctggaatgt caccaacggc aagcgtttct
     3481 ccacttatgc catcgcggca gaacgcggtt cgagaattat ttctgttaac ggtgcggcgg
     3541 cccactgcgc cagtgtcggc gatattgtca tcatcgccag cttcgttacc atgccagatg
     3601 aagaagctcg cacctggcga cccaacgtcg cctattttga aggcgacaat gaaatgaaac
     3661 gtaccgcgaa agcgattccg gtacaggttg cttgattgtt atccctgcgg ctggttactc
     3721 accagccgcg acatcgtctc cagcgaatcc gttcttaaga tataaagtcg ttttagtaac
     3781 aacggattat cccccggttt tactttgcct ttcatggttg tcaccgccag gtgaaatccg
     3841 gcatcgtttg ctgccttcac ggctttgtca ttaaatccgc caaacggata cgaaagatac
     3901 cagacatgcg gattaaattg cgccagagcg cggcgtgaac gtgcaaaatc aaacagaata
     3961 ttgtgttcac tacggctcgg taatatgggg cggcgataac catccacccg atgcaaaaaa
     4021 tgggtatgtg actggaaatc aaaaacatcg cgaatttcgt taagttcaga aacgctcata
     4081 aattgcagcg attttgggtc ccacttctgc gggtgacgtt tgatgcgcga ggtaacaata
     4141 aacgccgtcg ccttcatgcc atattgtttc aacacgggat acgcatagcg gctcaccgat
     4201 ttgaggccat catcaaaggt aatcaccacc gctcgcgcag ggagattgat cttattcttc
     4261 acgtaacctt ccagctgcac catgctcagt gtcgcgtatc ccctgtcgcg cagccaggcc
     4321 atctggttat tgaaagcgcg tactgaggtg gtcgtcgaag tatggcgaaa acgggtgttt
     4381 tcttcatcgc gcagaatatg gtgataggtt agcaccggca ggccattatc gggttgggca
     4441 tccagcgcgc tgatataggc cagtcgatcg ccaatacgga tctgatacca ggtttgattt
     4501 aacctgtctt tcagtttatg caaaatcggg tagcgcaaat tgtccgccag taccccataa
     4561 tggcgcactg cccgcactcg gcgcgttata gaccggcgta tctttccagg taattaagtt
     4621 ctgattactc agcggcttgt tgaggtcacc caaaccgtct tcaacttttt gtcgcccctg
     4681 aactggctcg agatgccctt tatcgataaa ccctttacca aagccaaaat taaatgcgta
     4741 ataacttgcg gcagtgggct ccacggcaat gatttgcccg gcccgaatat tccccacggt
     4801 caccatcttg tcgccaattt gcgcccagat cgcagcattt tcgatggttt gcatataacg
     4861 ggcaggtaac gcggcactaa cgcttgcggt aaacagcatc agcaggatga ataacagctt
     4921 gtttatacat gaaaaaataa ccgagggtga aacaacgctt gtattgtagc aaaagcgcca
     4981 tcagaatcgc gggttaatac tcatacaaat tatgtttgag gacaaaaggc ggattttttt
     5041 gttgttggtg ccaaagacta ctcacctccg gcgcacccag ttcgacaata cgctcgcgaa
     5101 actctgaact ggtcatggtt tcacggcaag ccatcatctg ttcaattaac ggtaacgtga
     5161 caccagaaat cacttcacaa cgggagtgtt tatggcttaa taatgaagcc acgcggtacg
     5221 gtggcgctcc ggctatatcg gttaagaaga tgacaccctc accagagtcc gcttcatgca
     5281 gagcatcgca catcatgcgg ctgagcatat tagagcttaa tccgcgccag aaattcacgg
     5341 cccggcactg aagaagtgcc ccatgttttt tctccagcgc atccagtatc tcttgcgccc
     5401 ggtcatcgtg acaggtaatt acccaaccta acatcgcctt cctccttagc cgaaaatcag
     5461 tctatcctga ccattgttga taaagggtga tagccgtcaa aactcctctc ccccgaatcc
     5521 agaggagagg aaatagcctt agctacgcaa accacgtcca cgttggatca gcgaccaaca
     5581 gatcaaataa aacaccacaa taaagaccac cagtacgcca aaggtagtgg ccagcggcac
     5641 atcatttata ccgaggaagc cgtagcggaa accactgatc atataaacga ttgggttcag
     5701 gtgcgacagc ccttgccaga acggcggcaa caaagtcagg gagtaaaaca ccccgcccaa
     5761 atacgtgagt ggcgttaaca caaaggttgg caccaggctg atgtcatcga acgttttggc
     5821 aaacacgccg ttcagcaaac ccgcaaggga gaatagcacc gccgtgagca ccagggttaa
     5881 ggcaacgaat acccacgaat gcacctgaaa cggcacaaaa aacagtgaaa ttgccgtcac
     5941 cagaatgcca acaaacagac cacgcgccac gccaccgccg acatatccgg caataatgac
     6001 gtgagtcgga accggcgcta ccagcagctc ttcaatatta cgctggaact tggcaccaaa
     6061 aaatgatgac gcgacgttag cgtaggcatt ggtgatcacc gacatcatga tcagccccgg
     6121 tacgatgaac tgcatatagc tgaagccatg catatcgcca atacgcgaac ctatcaggtt
     6181 accgaagata ataaagtaaa gggtcatggt gatgactggc ggcaccagcg tctgcaccca
     6241 gatacgcata aagcgatgga tctctttcgc ccagatgctt tttagcgcca cccagtaaag
     6301 atgcatcatg cgcgatctcc ttgtttttca ttaaccagtg aaacaaacag ctcttccaga
     6361 cggttagctt tgttacgcat acttaatacc tgaatgccct gctcacttaa ctgcgtaaat
     6421 acgctgttga tcccctgctc acgcagcact tcaacttcca gcgtcgcggt atcgaccagt
     6481 cgatactgat agccatcgag cttcggtaac gggcttttcg gtgcgagatc gagaataaag
     6541 gtttccaatt tcagcttcgc cagcagcgcc ttcatcgagg tattttccac cagctcaccg
     6601 tgttgaataa tgccgatatt gcggcacagc atttctgctt cttccaggta gtgtgtagtg
     6661 agaatgatgg tggtgccttt gtcgtttaaa tccttcaaaa agccccacat tgagcggcga
     6721 agttcaatat ccacgcctgc ggtcggttcg tcgagaatca gtagtttagg ttcatgcatt
     6781 aacgcacggg caatcattaa acggcgcttc atcccgccag ataacatacg cgcacgttcg
     6841 ttgcgttttc cccataaatc gagttgtttg agatattttt cgctgcggat gtacgcttct
     6901 ttgcgctcca cgccgtagta ccctgcctga ttcaccacaa tttgctgcac ggtttcaaac
     6961 gggttgaagt taaattcctg cggcaccagt cccaactgac gtttagcgtt cacgacatcc
     7021 ttctcgagat cgtaaccaaa tacgctgacc cgcccggagg ttttatttac cagagagctg
     7081 ataataccga tagtggtcga tttcccggcc ccgttcggcc cgagaagcgc ataaaaatca
     7141 cccgcttcga cctgcaaatc tattccacga agcgcctgaa cgccgcctgg ataggttttt
     7201 ttaagctgtt gaagttccag tgcaatggtc ataaattttt acttacctta cgttcttaca
     7261 ctttatctgt ggtttaaatc gtcccggagt taccctatat tagccaaacg taattatttg
     7321 gttacaggtc gttaacctcc atgaaagaca tagatacact catcagcaac aatgcactat
     7381 ggtcaaaaat gctggtggaa gaggatcccg ggttttttga gaaactggca caagcgcaaa
     7441 aaccgcactt tctatggatt ggatgttccg acagtcgcgt tcctgcagaa cgtttaaccg
     7501 gtcttgagcc gggcgaactc tttgttcacc gtaatgttgc taacctggtc attcacaccg
     7561 acctgaactg cctttccgtg gttcagtatg cagtggatgt actagaagtt gaacacatta
     7621 ttatctgtgg ccactacggt tgcggcggcg tacaagccgc agttgaaaac ccggaactgg
     7681 ggcttatcaa caactggctg ctgcatatcc gcgatatctg gttcaaacat agctcattgc
     7741 tcggcgaaat gccgcaagag cgccgtctgg ataccttgtg tgaactgaac gtcatggaac
     7801 aggtgtataa cctaggccac tccaccatta tgcaatcagc gtggaaacgc gggcagaaag
     7861 ttaccattca cggctgggcc tatggcattc acgacggctt gctgcgtgat ctggatgtta
     7921 ctgccaccaa ccgcgaaacc cttgagcaac gttaccgtca cgggatttcc aacctcaagc
     7981 tgaaacacgc caaccacaaa taaaaatgcc atgccggatg caacacatcc ggcaacttca
     8041 cacttactcg tccagcagaa tcactttgcc gatatacggc agatgacggt aacgctgtgc
     8101 gtaatcaatg ccgtaaccca ccacaaactc atccgggatc gagaaaccga taaattctac
     8161 cgggacgttc acttcacgac gggacggttt atccagcagc gtacaaatcg ccagcgactt
     8221 cggttcgcgc aggcttaaga tctcacgcac tttcgacagt gtattccccg agtcgatgat
     8281 atcttcaaca atcagcacgt ccttgccacg gatatcttca tccagatctt tgaggatttt
     8341 cacatcacgg gtggtggaca tgccgctacc gtagctggag gcggtcataa agtcgacttc
     8401 atgagatacc tgaacttcac ggcacaggtc cgccataaac ataaatgagc cacgcagcag
     8461 acccaccagc accatatcgc tgccgctgtc tttgtaacgc tcagtaatct gacgacccag
     8521 ttcggcgata cgcgctttaa tctccgcttc ggggatcatt acttctacag tatgtttcat
     8581 atctctaacc atatgattta aaaacaaatc acttcgcacg ggcaggtttt ggcaccgcaa
     8641 caaagcgcaa gacacgcagt ataccagtaa aactattcat tcgcggaatc tgttaataaa
     8701 gctcgaattg tgatgacgat cacacatgtt aaaacctata attaattgct actaaaatat
     8761 taatgaattg aaatggtgtc tctttatggc aattaacaat acaggctcgc gacgattact
     8821 cgtcacgcta acagtccttt ttgcagcgct ttgcgggctg tatctactca ttggcggagg
     8881 ctggctggtc gcgattggcg gctcctggta ctaccctatc gctggccttg tgatgctcgg
     8941 cgtcgcctgg atgctgtggc gcagtaaacg tgccgcgctt tggctatacg ccgccctgct
     9001 gctcggcacc atgatttggg gcgtctggga agttggtttc gacttctggg cgctgactcc
     9061 gcgcagcgat attctggtct tcttcggcat ctggctgatc ctgccgtttg tctggcgtcg
     9121 cctggtcatt cctgccagcg gcgcagttgc cgcactggtg gtggcactgc tgattagcgg
     9181 tagtatcctg acctgggccg gatttaacga tccgcaggaa atcaacggca ccttaagcgc
     9241 cgatgccaca cctacggaag ctatctcacc cgttgccgat caggactggc ctgcctatgg
     9301 tcgcaatcag gaaggtcaac gcttttcacc tctgaaacaa attaacgccg ataacgtcca
     9361 taatctgaaa gaagcctggg tgttccgtac tggcgatgtg aagcagccga acgatccggg
     9421 cgaaatcacc aatgaagtga cgccgattaa agtgggcgac accctttacc tgtgtaccgc
     9481 tcaccagcgc ctgtttgcgc tcgatgccgc cagcggcaaa gagaaatggc attacgatcc
     9541 taagctgaaa actaacgagt ctttccagca cgtaacctgc cgtggcgtct cttatcatga
     9601 agccaaagca gaaacggctt cgccggaagt gatggcggat tgcccgcgtc gtatcattct
     9661 tccggtcaat gatggtcgac tgattgcgat taacgctgaa aacggcaaac tgtgcgaaac
     9721 cttcgccaat aaaggcgtgc tcaatctgca aagcaatatg ccagacacca aaccgggtct
     9781 gtatgaaccg acttcgccac cgattatcac cgataaaacc atcgtgatgg caggttcagt
     9841 taccgataac ttctcaaccc gcgaaacgtc tggcgtgatc cgtggttttg atgtcaacac
     9901 cggggagctg ctgtgggctt ttgatcccgg cgcgaaagat ccgaacgcaa tcccgtctga
     9961 cgaacacacc tttaccttta actcgccaaa ctcctgggca ccagcggcct atgacgcgaa
    10021 gctggatctg gtctatctgc cgatgggcgt gaccacgccg gatatctggg gcggtaaccg
    10081 cacaccggaa caggaacgtt atgccagctc gattctggcg ctgaatgcca ctaccgggaa
    10141 actggcgtgg agctaccaga ccgttcacca cgacctgtgg gacatggatc ttccggcaca
    10201 gccgacgctg gcggacatca ccgttaatgg tcagaaagtg ccagttattt acgctccggc
    10261 gaaaaccggc aacatttttg tgctcgatcg tcgcaatggc gaactggtgg ttccggcccc
    10321 ggaaaaaccg gtgccgcaag gtgctgcgaa aggcgattac gttactccga cccagccgtt
    10381 ctctgaactg agcttccgtc cgaagaaaga tttgagcggt gcggatatgt ggggagccac
    10441 catgtttgac caactggtgt gccgcgtgat gttccaccag atgcgctatg aaggcatttt
    10501 cacgccgcca tctgaacagg gcacgctggt cttcccgggt aacctgggaa tgtttgaatg
    10561 gggcgggatt tccgttgatc caaatcgtga agtggcaatt gccaacccaa tggcactgcc
    10621 gtttgtttcg aaactgatcc cacgcggtcc gggtaacccg atggagcagc cgaaagatgc
    10681 caaaggcacg ggtacggaat ccggcattca gccacagtac ggtgtaccgt atggtgtcac
    10741 gctcaacccg ttcctctcac cgtttggtct gccgtgtaaa cagccagcat ggggttatat
    10801 ctcggcgctg gatctgaaaa ccaatgaagt ggtgtggaag aaacgtattg gtacgccgca
    10861 ggacagtatg ccgttcccga tgcctgtacc ggtgccgttc aatatgggta tgccgatgct
    10921 gggcgggcca atctccacgg cgggtaacgt gctgtttatc gccgctacgg cagataacta
    10981 cctgcgcgct tacaacatga gcaacggtga aaaactgtgg cagggtcgtt taccagcggg
    11041 tggtcaggcg acgccaatga cctatgaagt gaatggtaag cagtatgtgg tgatctccgc
    11101 aggcggtcac ggttcatttg gtacgaagat gggcgactat attgtggctt atgccctgcc
    11161 ggatgatgtg aaataaccat aatgcccgga gagatccggg catatttccg aatacggtct
    11221 ttttataccg taaaccctaa catcatcccc gtatcttcat gctccagcag atggcagtgc
    11281 gccatataag catgttcttt cggtgcgtcg tgattaaact tcaccagcac ttcactgaca
    11341 ttgccttcta ccttaacggt atctttccag cccgcgcgat gagccgctgg cggtttgcca
    11401 ttttctgaca agatacggaa ctgcgtgccg tgaatatgga acggatgcag catcatgtcg
    11461 cccacgccag agataaccca acgttcgtac tgccctttcg ccgccgcaaa catcggctta
    11521 ttcatatcaa acgcctgacc gttgatttta ttggcatggt ggaaatcgaa cttcccgccg
    11581 tggttcatat gattcatatt accgtgcccc atatggccca tcatctggct gtgatccatt
    11641 ccggccatcg cctgatcgcc atatttctcc attagcatct gcatacccat catatcgagc
    11701 atcgggtcca tagaaagttg cagcttgcgt accgtcagcc cttccagcga aggtaacgca
    11761 ggcaggctac ttaatgtgtc tggcaaagca ccggaggcac taatagcaat cggctgaatc
    11821 cgcattaccg gatgcggctt gtcaaacggc gcaatcgcca tccccatctg gctgaccggt
    11881 agcgtcacca ggtcaaaggg tttgttgtcg ttaacctcca ccagcacttc aaaacgctcg
    11941 cccatcagca ccggcagctc gctcaccttc accggttcag gtagcagacc accgtcgctg
    12001 gcaatcacat acagcgggcg attgtcgctg gtggcgaaat tgagcgagcg ggcattacag
    12061 ccattgagca aacgcaggcg cagccaacca cgcggggcag cgtgttgtgg gtagattgca
    12121 ccgttggtca gcagcgtatc gccaaaccag cccacggcgg cggtcatcac atccagttga
    12181 taatcaatct gcccatcagc gttaaatttt ttatcctgaa caatcaccgg aacatcatcg
    12241 ataccccact gttttggcag cattaatttc aggatctcgt catcttcaat taccaccagc
    12301 ccagccaacc ccatcgccac ctgtcgccca gtcttgccat gttgatgtgg atggaaccag
    12361 caagtagcgg caggttgatc aacgttcaac gtcaccgagc gcttgccacc tggcggaata
    12421 attccctgcg ggccgccgtc gacttcaccc ggtacttcca gcccgtgcca gtgcaacgtc
    12481 gtctcttccg tcagttggtt atagatatca accgttaccg ctttgccgcg ctgtaatttc
    12541 accgccggcc ccagcagatt gccgttatag ccccaggtag ttgcagtttt ctcgccaaag
    12601 gtagactgac ctgcgccaat agttaactga atgcgattac gggcatcggt cgtgagcaaa
    12661 tcagggatcg gtaacgttgg gcgttccgcc gcaaagactg cgcggctcca cagcggcaag
    12721 gctgaagcca cacccagcgc gacggaatat tttaagaaat cacgacgttg catagttatt
    12781 tccttattct taagcaggcg aaacaaaatc aaacgttgag catagtcctt ccccttacgg
    12841 gaaggtcaag ccgcagacac aatttaatcg acaataatgg tcgtcgcctc gctcgcagtg
    12901 tgctaacgtt tatcttcttt aagcccctgg tagaagcaat gaagacgttt ttcagaacag
    12961 tgttattcgg cagcctgatg gccgtttgcg caaacagtta cgcgctcagc gagtctgaag
    13021 ccgaagatat ggccgattta acggcagttt ttgtctttct gaagaacgat tgtggttacc
    13081 agaacttacc taacgggcaa attcgtcgcg cactggtctt tttcgcccag caaaaccagt
    13141 gggatctcag taattacgac accttcgaca tgaaagccct cggtgaagac agctaccgcg
    13201 atctcagcgg cattggcatt cccgtcgcta aaaagtgcaa agccttggcc cgcgattcct
    13261 taagcctgct tgcctacgtc aaataatccc tgataccttt ttgtagaaat attgaccgtg
    13321 catccgcggt caatgttagc tattatgttg cgcccttttt tacgggtgtt aacaaaggag
    13381 gtatcaaccc atggccgaaa aaaaacagtg gcatgaaacg ctacacgacc agtttgggca
    13441 gtactttgcg gtagataacg ttctgtatca tgaaaagacc gatcaccaag atctgatcat
    13501 ttttgagaac gctgcatttg gtcgcgtaat ggcgctggat ggcgtagtac aaaccaccga
    13561 gcgcgacgag tttatctatc atgagatgat gacccatgtt ccgctactgg cccacggtca
    13621 cgcgaaacat gtgctgatta tcggcggcgg cgacggtgcc atgctgcgtg aagtaacccg
    13681 acataaaaac gttgagtcaa tcacgatggt agaaatcgat gcgggtgtcg tgtcgttctg
    13741 ccgtcagtat ctgcccaacc ataacgccgg tagctacgac gatccgcgct ttaagctggt
    13801 gatcgacgat ggcgtcaatt tcgttaatca aaccagccag acctttgatg tcattatctc
    13861 cgactgcacc gatcctatcg gtcccggcga aagtctgttc acctcagcat tttatgaagg
    13921 ctgcaaacgt tgcctgaatc ctagcggtat cttcgtcgca caaaacggcg tctgcttttt
    13981 acagcaggaa gaagccatcg acagccatcg caaactcagc cattacttca gcgacgttgg
    14041 cttttatcag gcggcgatcc cgacctatta cggcggtatc atgacttttg catgggcgac
    14101 agataacgac gccttacgcc atctctcaac cgaaattatt caggcgcgtt ttctcgcttc
    14161 tggcctgaaa tgccgttatt acaatccggc aatccatacg gcagcttttg ccttacctca
    14221 gtatctgcaa gatgcactgg cttcacagcc gtcctaagga gaatataaga aattgaaaaa
    14281 actgaaactg catggcttta ataatctgac caaaagtctg agtttttgta tttacgatat
    14341 ctgctacgcc aaaactgccg aagagcgcga cggttatatt gcttatatcg atgaactcta
    14401 taatgccaac cgtctgaccg aaatcctgtc agaaacctgt tccattatcg gggccaatat
    14461 tcttaacatc gcccgccagg attacgaacc acagggtgcc agcgtcacta ttctggtgag
    14521 tgaagaaccg gttgacccga aactcatcga caaaacagaa caccccggcc cactgccaga
    14581 aacggtcgtt gcccatctcg ataaaagtca tatttgcgta catacctacc cggaaagcca
    14641 tcctgaaggt ggtttatgta ccttccgcgc cgatattgaa gtctctacct gcggcgtgat
    14701 ttctccgctg aaggcgctga attacctgat ccaccagctt gagtccgata tcgtaaccat
    14761 tgattatcgc gtgcgcggtt ttacccgcga cattaacggt atgaagcact ttatcgacca
    14821 tgagattaat tcgattcaga actttatgtc tgacgatatg aaggcgctgt atgacatggt
    14881 ggatgtaaac gtctatcagg aaaatatctt ccataccaag atgttgctta aagagttcga
    14941 ccttaagcac tacatgttcc acaccaaacc ggaagattta accgacagcg agcgccagga
    15001 aattaccgct gcgctgtgga aagaaatgcg cgagatttat tacgggcgca atatgccagc
    15061 tgtttaacgg ctctggcgga gctccaggct ccgccagatt tatttacttc tgctgcacga
    15121 aattgcggta agccgccacg acctgcagaa aatcctcaac gccgcatagc gacaggcttt
    15181 cttcgtcgta gtagttcatc ccctcttcca tttcatcgcc agcgaattcc agttgattgg
    15241 cgcgaaccat cacctcttca ccgtccatcc acagggtgta ttcatgccct gcccgttgcc
    15301 aggaccgttc gctacctttc agtgcgtgcg ctgcttgttc cacttcatca agcaaggcca
    15361 ggttttcttt cacctcttca ttaaaccagt gcccgaccac ttcatgcccc atggacatac
    15421 gcacctttac cactccggta atatcgcgca gaaattcgta atccatagtg tgttcctctg
    15481 ctcccggcaa tgcgccgaaa tcgcattgcg ccattgatgt aattatcgca gccttaccgg
    15541 agaaaaacag cggaacggcg atggtttaga aataaaaaat gcccgggaat ctcattcacc
    15601 gggcattgtg tcgtttatgc gcagcgcgtg cgcttactta ttacaccgca gtctggaaaa
    15661 tcaccccatc ggctttttcg gtgtactgag aaagttggtt gaagttcaga taacgataag
    15721 tatcaacggc agttttatct acttgcgcaa cgtaggtctg gtactcttcc ggcgtcggca
    15781 gtttgccaat cagcgccgca acagccgcca gttctgcaga agccaggaag acattcgcgc
    15841 cagtccccag acggttcggg aagttacggg tagaggtgga aaccaccgtc gcaccgtctg
    15901 ctacacgcgc ctggttaccc atacacagag aacagcccgg gatctcgata cgagccccgc
    15961 tcttaccgaa gacgctgtag tagccttctt cagtcaactg tgcggcgtcc atacgggttg
    16021 gcggtgccac ccacaggcgg gtcggcaact ggcctttatg cgcatccagc agtttacccg
    16081 cagcacggaa gtgaccgatg ttagtcatgc aagaaccgat aaatacttcg tcgatcttct
    16141 cgccctgtac cgcagacagc ggacgcgcgt catccgggtc gttcggagca cacaggattg
    16201 gctctttaat atccgccaga tcgatgtcaa tcactgccgc gtattccgca tctgcatctg
    16261 cttccagcag ctcaggattc gccagccatt tttccatgcc ctgaatacga cgttccaggg
    16321 tacgacgatc gccgtaacct tccgcgatca tccacttcag caggacgata ttagagttaa
    16381 ggtattcgat gattggttct ttgttcagct tgatagtaca accagcggca gaacgctcag
    16441 cggacgcatc ggtaagctca aaggcctgct caactttcag atccggcaga ccttcaattt
    16501 ccagaatgcg gccagagaag atgtttttct tgcctttctt ctcaacggtc agcagacctt
    16561 gtttgatggc atacagcgga atggcgtgta ccagatcgcg cagggtgatg cccggctgca
    16621 ttttgccttt gaagcgcacc agaacggatt ccggcatatc cagcggcatt acgcctgttg
    16681 cggctgcaaa tgccaccaga ccagaacccg ccgggaaaga gataccgatc gggaaacggg
    16741 tatgggagtc acctccggta ccgacggtat ccggcagcag catacggttc agccaggagt
    16801 ggattacgcc gtcacccgga cgcagcgaca caccgccacg gttcataatg aagtccggca
    16861 gcgtgtggtg cgtgttcacg tcaactggct tcggatacgc cgcggtgtgg cagaaagact
    16921 gcatcaccag gtcagccgag aagcccaggc acgccaggtc tttcagttca tcacgggtca
    16981 tcgggccggt agtgtcctgt gaacctacag aagtcatttt cggttcgcag tacgcgcccg
    17041 gacgaatgcc tttcacgcca caggcacggc ctaccatttt ctgcgccagc gagaagccgc
    17101 gatcgctctc agcgacatct ttcgcctgac ggaacacatc actgtgcggc agaccaagtg
    17161 cttcacgcgc tttggtggtc aggccacgcc cgataatcag cgggatacgg ccgccagcac
    17221 gcacttcatc aatcagcacg tcggttttca gttcgaaggt cgccagcagt tcgcctgttt
    17281 cgtggttacg cacttcacct ttgtacgggt aaacgtcaat cacgtcgccc atgttcaggt
    17341 tagagacgtc gacttcgatt ggcagtgcac ccgcgtcttc catcgtgtta aagaagatgg
    17401 gtgcaatttt accgccgagg cacaaaccac cgccgcgttt gttcggcaca tgtggaatat
    17461 catcgcccat aaaccacaga acggagttcg tggcggattt acgcgatgaa cccgtaccca
    17521 caacgtcacc gacgtacgcc agcgggaaac ctttctgttg cagagcttca atctgtttga
    17581 tcgggccaac aacacctggc tggtctggct caataccttc acgggcgttt ttcagcatcg
    17641 ccagcgcgtg cagtgggata tccgggcgcg accacgcatc cggtgccgga gaaaggtcat
    17701 cggtgttggt ttcgccagtg actttgaaga cggtaacggt cagtttttca gccagcgccg
    17761 ggcgattcag aaaccattcg gcatccgccc aggactgcat tacctgcttc gcatattcgt
    17821 tgcctgcttt cgctttctct tctacgtcat agaagttatc gaacatcagc agtgtgtgag
    17881 aaagtgcttt ggcagcgatc ggtgccagtt tggcatcatc cagcgcgtcg atcagcggat
    17941 gaatgttgta accaccctgc atggtgccca gcagttcgat ggctttttcc ggagtcagca
    18001 gaggggattt ggcttcgcct ttcgcgatag cagccaggaa gcctgctttg acataggcgg
    18061 cttcatcgac gccaggggga acacggttgg ttaacagatc taacaggaat tcttcttcgc
    18121 ccgcgggcgg gtttttcagc agctctacaa gtgcggccat ttggtttgca tccaggggtt
    18181 tgggcgcaat cccctcagcg gcacgctcag ctacgtgctt acggtattct tctagcacga
    18241 cggttctcct cgctctcatt gtcatagtgc ggcaggcgat tctcttcacg ctcctgtgag
    18301 acagcagttt gtagggtaaa tgcccagtac cgcaacgggc agaatagcag gattttgacg
    18361 acgtgttaat ctgtttacaa aaaagcaaca taaaaaagtg gctgaatcgt taaggatggt
    18421 ctagagattg tttccctccg taaaaacttc gttaattcgc atggtgataa tcacctttct
    18481 caacgaatcc caagattagt caaaatttaa actaccgcct ctttatactc ggattaacag
    18541 cacctgcggg tggcagttcg ccgaccattg cgatttcctt gagatccgaa ttatgaaaat
    18601 gactttgccg tttaaacccc atgtgctggc actaatttgc agtgccgggc tttgtgccgc
    18661 ctctgccggg ctatatataa aaagccgcac agtggaagcg gctgtggaaa cgcaatcgac
    18721 acaactggct gtgtctgacg ctgccgcggt tacgcttcct gcaacggttt ccgcgcctcc
    18781 cgtaacaccc gccgtcgtta aatccgcatt cagcactgca caaatagatc aatgggtcgc
    18841 gcccgtcgcg ctgtatcccg acgccctact ttcgcaggtg ctgatggcat caacctatcc
    18901 ggcaaacgtt gctcaagcag tgcaatggtc gcacgataat ccacttaaac aaggcgatgc
    18961 tgctattcag gcggtatctg accagccgtg ggacgccagc gttaaatcac tggtggcctt
    19021 tccacaattg atggcattga tgggcgaaaa cccgcaatgg gtgcaaaacc tgggcgatgc
    19081 ttttctggcg cagccgcagg acgtgatgga ctcggtacag cgattgcggc aactggcgca
    19141 acaaaccggt tcgctgaagt catcaaacga acaaaaagtt attaccacaa cgaagaaagc
    19201 tgtaccggta aaacagacag tcacggcacc cgtcatacca tccaataccg ttttaactgc
    19261 cagccccgtc attacagagc ctgcaacaac cgtcatttcc attgagcccg ccaatcctga
    19321 tgtggtctat attcccaact acaacccaac cgtggtttac gggaactggg ccaatactgc
    19381 gtatccgccg gtttatctgc caccaccagc cggagaaccg tttattgaca gctttgtgcg
    19441 cggattcggc tatagcatgg gtgttgctac cacgtacgca ctattcagca gcatcgactg
    19501 ggatgacgac gatcatgacc atcatcatca tgacgatgat gattatcatc accacgatgg
    19561 cggtcatcgt gacggtaatg gctggcaaca caacggcgac aacatcaata tcgacgtcaa
    19621 caatttcaac cgtatcaccg gtgagcatct tactgataag aatatggcat ggcggcacaa
    19681 tccaaactac cgtaatggtg tgccctatca tgatcaggat atggcaaagc ggtttcatca
    19741 aaccgatgtc aacggcggaa tgagtgccac gcagctacct gctccaacac gcgacagcca
    19801 gcgtcaggcg gcagcaagtc agtttcagca acgaacacac gccgcccccg tcattacacg
    19861 agatacccaa cgtcaggcag cggcacagcg gtttaatgaa gctgaacact atgggagcta
    19921 tgacgacttc cgcgacttca gccgtcgcca acccctgacc cagcaacaaa aggacgccgc
    19981 tcgtcagcgt tatcagtcag cttctcctga gcagcgccag gcagttcgcg agagaatgca
    20041 gactaacccg cagatccagc agcgaagaga ggcagcgcgt gagcgcattc agcccgcctc
    20101 gcctgagcag cgccaggcag tccgcgagaa aatgcagact aacccacaga tccagcagcg
    20161 aagagacgca gcgcgtgagc gtattcagtc agcctcgcct gagcagcgcc aggtgtttaa
    20221 ggaaaaagta cagcagcgcc cactgaacca acagcaacgt gataacgccc gccagcgtgt
    20281 tcaatcagca tcacctgaac aacgtcaggt ttttcgggag agagttcagg agagccgccc
    20341 acaacgtcta aacgacagta accgtactgc cagattgaat aacgatcaac ggtcagcagt
    20401 acgcgaacgt ctctctgagc gcggagcaag gcgactggaa aggtaaatta cagacgtaaa
    20461 aaaagcggcg tggttagccg cttttttaat tgccggatgt tccggcaaac gaaaaattac
    20521 ttcttcttcg ctttcgggtt cggcaggtcg gtaatgctac cttcgaacac ttctgccgcc
    20581 aggcccacag actcgtgcag agtcgggtgc gcatggatgg tcagcgcgat gtcttcagcg
    20641 tcacaaccca tttcgattgc caggccgatt tcacccagca gctcgccgcc gttggtaccg
    20701 acaatcgcac caccgatcac acggtgagat tctttgtcga aaatcagctt ggtcataccg
    20761 tctgcgcagt cggaagcgat agcacgacca gaagcagccc acgggaaggt ggcggtttca
    20821 tagctgatgc ctttctcttt cgcttctttc tcagtcagac ctacccatgc aacttctggt
    20881 tcggtatagg cgatagacgg gataactttc ggatcgaagt agtgtttttt accggcgata
    20941 acttcagcgg caacgtgacc ttcgtgaaca cctttgtgtg ccagcatcgg ctgaccaacg
    21001 atatcgccga tagcaaagat gtgcggtacg ttggtacgca gctgtttgtc aacgcggatg
    21061 aaaccacggt cgtccacttc cacgccagct ttgcctgcgt cgaggttttt accgttcggc
    21121 acacgaccaa tcgctaccag cacggcgtcg taacgctgcg gttcagcggg tgcttttttg
    21181 ccttccatcg tcacataaat accgtcttct ttcgcttcaa cggcggtaac tttggtttcc
    21241 agcatcaggt tgaatttctt gctgatacgc ttggtgaaga ctttaacgat gtctttgtca
    21301 gctgccggga taacctggtc gaacatttca accacgtcaa tctgtgaacc cagcgcgtgg
    21361 tatacggtgc ccatttccag accgatgata ccgccaccca ttaccagcag gcgttctggt
    21421 acttctttca gttccagcgc gtcagtggag tcccagatac gcggatcttc atgcggaata
    21481 aacggcagtt ggatcgggcg agaacccgct gcaatgatcg cgttgtcgaa gttgatcacg
    21541 gttttaccgt tctcaccttc aacttccagg gtgttagccc cggtaaattt acccagaccg
    21601 ttgaccactt tgactttgcg gcctttcgcc ataccagcca gaccaccggt cagctgattg
    21661 atcactttct ctttccaggt acgaatcttg tcaatatcgg ttttcggttc gccgaagacg
    21721 ataccgtgtt cagccagcgc tttggcttct tcgataactt ttgctacgtg cagcagtgct
    21781 ttagaaggga tacagccgac gttcaggcaa acaccgccaa gggtgttgta acgttctacg
    21841 attacggttt ccagacctaa atcagcgcaa cggaaggcag cggagtaacc tgcggggcct
    21901 gccccaagta ccacgacctg agttttgatt tcagtactca tcatgacctc tatatattta
    21961 tctccggcgg tcatacccgt cgtctttcag gccgcagcgg cgttagcttc acgccctcac
    22021 cccagtcact tacttatgta agcccctggg gattctggcg cttgctacct tgctgcaccc
    22081 agaaatccat agggtatgtg aagtaatacc ctaaccacca ccgggtcgtt ctatccgtcg
    22141 gtattttaca aaattgttaa caatttttaa acaacaaacg gcaaccgatt tgtctattcg
    22201 ctaataacct caatacattc atgagattac cagaaaaaag ccggccgttg ggccggctct
    22261 tttacttaca tcaccagacg gcgaatgtca gacagcgtgt tgttaatgat ggtaatgaaa
    22321 cgggcaccat cagcaccgtc gatcacgcgg tggtcgaagg agagagaaat cggcagcatc
    22381 agacgcggca cgaactcttt accattccac accggctcca tcgcggactt ggaaacgccg
    22441 aggatagcca cttccggcgc gttcacaatc ggcgcgaagt gggtagtacc caggccgccg
    22501 atgctggaga tggtgaagca accgccctgc atttcgcccg cagtcagctt accgtcacgc
    22561 gctttcttag aaatagtcat cagctcgcga gacagctcga tgatgccttt cttgttgacg
    22621 tctttgaata ccggaacaac cagaccgttc ggggtatcca ccgccacacc gatgttgatg
    22681 tatttcttca gggtcagacg ctgaccgtct tccgacagcg aactattgaa gcgaggcatc
    22741 tgctcaagag ctgcagcaac ggctttcatg atgaagacaa ccggggtgat cttcacatcc
    22801 agcttacgtt tcgccgcttc ttcgttctgc tgtttacgga acgcttccag ctcggtgata
    22861 tcggttttgt cgaagtgggt aacatgcggg atcatcaccc agttacggct caggttagca
    22921 ccagaaattt tctggatacg gcccagttcc acttcttcga tttcaccaaa cttgctgaag
    22981 tccaccttcg gccacggcag catgcctggg ataccgccgc cagtcgccgc cggagctgct
    23041 tctgcacgtt tgatagcttc tttcacgtaa gcctgaacgt cttcgcgcag gatacgacct
    23101 ttacggccag tgcccttcac tttcgccagg ttaacaccaa actcgcgtgc cagacggcgg
    23161 atcagcggag tcgcgtgaac ataagcgtcg ttttcagcaa attcagattt gccttccgct
    23221 ttcgcagctg gtgctgctgc cggggcttca gcttttgctg ccggtgccgg cgctgccgct
    23281 tcctgtttcg caggagctgc cgcaggcgct gcgccttcaa cttcgaagat cataatcagc
    23341 gagccagttt tcactttatc gccaacgttg actttcagtt ccttcacgac gcctgcaaac
    23401 ggcgccggaa cttccataga agctttgtcg ccttctacgg tgatcagtga ctgttcagcg
    23461 gcaactttgt cgcccacttt caccatcact tcagtcactt caacttcgtc accgccgata
    23521 tccggaacgt taacttcttt cacgccagct gctggtgcag gggccgctgc cggagccgct
    23581 tcctgtttag ccgccggagc tgccgcgcct gcttcacccg cgacttcgaa gaccataatc
    23641 agcgagccgg tagacacttt gtcacccacg ttcactttga tctctttcac ggtgccagca
    23701 aacggagccg gaacttccat agaagcttta tcgccttcta cggtgatcag cgactgttca
    23761 gcttcaactt tatcgccaac tttcaccagg atttcggtca cttcaacttc gtcgctgccg
    23821 atatccggaa cgttaacgtc ttttgccgcc gcagccgcgg gtgctgctgc cggagctgct
    23881 tctttcttct cttctgcctg agcaggtgca gcgtctgctg caccgtcggc ggaatcgaaa
    23941 atcataatca gtgcgccggt ctgggtttta tcgccaacag agactttgat ctctttaacg
    24001 atacccgcct gcggagacgg aacttccata gaggctttgt cgccttctac ggtgatcagc
    24061 gactgttcgg cttcaacttt gtcgcccact ttgaccagga tctcggtgat ttcaacttca
    24121 tcagccccga tgtccggtac tttgatttcg atagccatta ttcttttacc tcttacgcca
    24181 gacgcgggtt aactttatct gcatcgatgt tgaatttggc gattgcgtca gcaaccactt
    24241 tcttatcgat ttcgccacgt ttagccagtt cgcccagcgc cgcaaccacg acataagaag
    24301 catcaacttc gaagtggtga cgcaggttct cacggctgtc ggaacgaccg aagccatcag
    24361 tacccagtac gcggtagtcg tcagccggta cgtaagtacg gacctgctca gcgaacagtt
    24421 tcatatagtc ggtagatgcc actgccggag cgtcgttcat cacctgagcg atatacggaa
    24481 cgcgcggagt ttccagcgga tgaagcatgt tccagcgttc acaatcctga ccatcacgcg
    24541 ccagctcggt gaaggaggtc acgctataaa cgtcagaacc tacgccgtaa tctttcgcca
    24601 ggatctctgc cgcttcacgg acgtgacgca ggatagaacc ggagcccagc agctgaactt
    24661 tacctttgct accttcaatg gtttcgagtt tgtagatacc tttacggata ccttcctcag
    24721 caccttccgg cattgccggc atgtggtagt tttcgttcag cgtggtgatg tagtagtaaa
    24781 cgttctcttg tttttcaccg tacatacgct ccagaccgtc atgcataatg acagcaactt
    24841 cgtaagcgta agccgggtcg taagagatac agttcggaat agtcagcgac tgaatgtggc
    24901 tgtgaccatc ttcatgctgc agaccttctc cgttcagggt ggtacgaccg gaagtaccgc
    24961 cgatcaggaa gccacgcgct tgctggtcgc cagccgccca gcacagatcg ccaatacgct
    25021 ggaagccgaa catcgagtaa tagatgtaga acgggatcat cggcagattg ttggtgctgt
    25081 aagaggtcgc cgctgccagc caggaacaac ctgcgcccag ctcgttgatc ccttcctgca
    25141 gaatctgacc tttctcatct tctttatagt aagcaacctg ctcgcggtcc tgcggggtgt
    25201 actgctgacc gttcgggctg taaataccaa tctgacggaa cagaccttcc ataccgaaag
    25261 tacgcgcttc gtcggcgatg atcggtacca gacgatcttt gatcgacttg ttcttcagca
    25321 ttacgttcag ggcacgaacg aaagcgatag tggtagagat ctctttgctc tgctcttcca
    25381 gcagcgcgcc gaagtcttgc aggctcggca gctcaagctt ctcggtgaag ttcggctgac
    25441 ggcttggcag ataaccgtgc agtttctgac gctgtgcgtg cagataggta tgctcttcag
    25501 aaccttccgg gaaggtgatg tacggcagtt tttcgatatc tgcatcagac accggcacat
    25561 tgaaacggtc gcggatgtga cgcacgccgt ccatgttcat tttcttaacc tggtgcgcga
    25621 tgtttttacc ttcagccgcg tcgcccatgc cgtaaccttt aatggaatga gcaaggatta
    25681 ctgtcgcttt gcctttggtt tcctgcgctt tcttgaatgc agcgtagatt ttcttcggat
    25741 cgtgaccacc acggttcagt gcccagatct gctcgtcagt ccagtctgca accagtgctg
    25801 cggtttcagg atatttaccg aagaagtgtt cacgaacgta cgcaccatct ttcgatttga
    25861 aggtctggta gtcgccgtca acggtttcgt tcatcagctg gatcagttta ccgctggtat
    25921 ctttacgcag cagttcatcc caacggctac cccacatcac tttgatcacg ttccagccag
    25981 caccttcgaa gatgccttcc agttcgttga tgatcttgcc gttaccggtg accgggccgt
    26041 caagacgctg caggttacag ttgataacga agaccaggtt atccagtttt tcacgggtag
    26101 cgatggtgat cgcacctttg gattccggtt cgtccatttc accgtcgccg aggaacgcgt
    26161 aaacggtctg tttagaggta tctttcaggc cacggtgttc cagatatttc aggaatttag
    26221 cctggtaaat agcaccaatc ggccccagcc ccatagatac ggtcgggaac tgccagaatt
    26281 ccggcatcag tttcgggtgc ggataggaag agaggccatt gccgtgaact tcctgacgga
    26341 agttatccag ctgctcctga gtcagacgac cttccaggaa agcacgagcg tacacgcccg
    26401 gggagatgtg gccctggaag taaaccaggt cgccgccatc ctgctcgttg cgtgcacgga
    26461 agaagtggtt aaagcacaca tcataaatgg ttgcggaaga ctggaaggac gccatatggc
    26521 cgcccagttc gaggtctttt ttcgacgcac gcagcaccgt catgatggcg ttccagcgga
    26581 tagctgaacg aatacggcgt tccagttcca gattacccgg atactccggt tgttcttcaa
    26641 cggggatggt gttgatgtag ttgctgatac ctgtgcctgc ggctacgttt acaccgcctt
    26701 tgcgggcttc agcaagcagt tggtcgatca gatactgagc acgctcaaca ccttcttcac
    26761 ggatgaccga ttcgatcgcc tggagccagt cgcgagtttc gatcggatcc acgtcatttg
    26821 ggaaacgttc tgacatgggt tattccttat ctatctaata acgttgagtt ttctggaacc
    26881 tgtcccattg aactctcgcc ggaaagctca ataagacagg ttctacgttt agttgccgcg
    26941 cttttatatg cgcttgattt acaacatctt ctggataatt tttaccagta aaatcactaa
    27001 ttctttcgtt gctccagacg acgcagagaa cgctcacggc ggctctcttc acgacttctg
    27061 tcgagcaaaa tttcttcgat aaaggccaga tggcgatgcg atgcttcgcg cgcttcttcc
    27121 ggcttaccgg ccataatcgc ttcaaatatg cgggtgcggt gactactcac cagcggcagc
    27181 atctcgcgac gcgaatagag caattcgaag ttctggcgga cattctgggc caacatcggc
    27241 tccatacacc ttagcagatg aagcagaacc acattgtggg ccgcttcagt gacagcaatc
    27301 tgatactgga gtacggcgtt tgattccgcg tccagatcgc cagactgctg cgccagttct
    27361 atggcgtgat ggagttcacg gatgcgttcc ttgtcttcat cggtactacg cagcgcggcg
    27421 taataagcgg cgataccttc cagggcgtgt cgtgtttcga gcaagtcata ctgtgactca
    27481 ggatggtcgg agagcagctc caccagcgga tcgctgaagc tttgccatag gctgctctgg
    27541 acaaaagtgc cgccaccctg gcgacgaagc aacaagccct tcgcttcgag acgttgaatc
    27601 gcctcacgca aggagggacg ggagacgtca aactgttttg ccagttcgcg ttccggtggg
    27661 agtttttcgc ccgggcggag agtgccttcg aggatcaaaa actccagttg ctgctcaatc
    27721 acatcggaga gttttggttg gcggattttg ctgtaggcca tgagttcctg tcttaagcca
    27781 cttgccgaag tcaattggtc ttaccaattt catgtctgtg acgctaaagt aacaaagtat
    27841 tcaccttatg tccatacagg ttttgattga aatcatgaaa ctgtgcacat tttaacaact
    27901 tgacatatat aacgtttcaa agttgtaact atgcacaaat gtagacttta cgtaggaaag
    27961 ggatttttta acgattatta aactataaaa atccgaattg aaccgattca cttaccaatt
    28021 ttgtgatttt taattcaatt aaaacgaatt taaattcatt ctacatattg agaggggttg
    28081 aggctgagct ttacaaacgg tttcttttta agcaactcat cttcaaccat gcataaagcg
    28141 ggtgcattcg ctgccgcata ccattattct tgatctgacg gaagtctttt tgtaacaatt
    28201 caaacttctt tgatgtaaac aaattaatac aacaaacgga attgcaaact tacacacgca
    28261 tcactgcgta gatcaaaaaa acaaccaccg cacgaggttt catgatggaa ggtcaacagc
    28321 acggcgagca gctaaaacgc ggccttaaaa accgccatat tcagcttatc gcgctgggtg
    28381 gcgcgatagg gaccgggtta ttcctgggta gcgcctccgt aatacagtcc gcagggccag
    28441 ggattatcct gggttacgcc attgctggtt ttatcgcctt tctgatcatg cgtcagctgg
    28501 gtgaaatggt ggtcgaagaa cctgtcgcag gctcctttag ccactttgct tataaatact
    28561 ggggcagttt tgccggtttc gcctctggct ggaactactg ggtactgtac gttttagttg
    28621 ccatggctga gctgactgcc gtgggtaaat acattcagtt ctggtatccg gaaatcccca
    28681 cctgggtttc tgccgccgta ttctttgtgg tgattaacgc catcaacctg accaacgtta
    28741 aagtgtttgg cgagatggag ttctggtttg ccattatcaa agttatcgct gtggtagcga
    28801 tgatcatctt cggcggctgg ctgctattca gtggcaacag cggcccgcag gcgaccgtta
    28861 gcaacctgtg ggatcagggt ggtttcctgc cgcacggctt caccgggctg gtgatgatga
    28921 tggcgattat catgttctcg ttcggtggtc tggaactggt ggggatcacc gcagcagaag
    28981 ctgataaccc ggagcaaagt ataccgaaag caactaacca ggttatctac cgcatcctga
    29041 ttttctatat tggttcgtta gccgttctgc tctcactgat gccgtggacc cgcgttaccg
    29101 ccgataccag tccgtttgtg ctgatcttcc acgagttagg cgataccttt gtggcgaatg
    29161 cgctgaacat cgtggtactg actgcggcgc tctccgtgta caacagctgc gtatattgca
    29221 acagccgtat gctgtttggt ctggcacaac agggtaatgc gccaaaagcg ctggcgtctg
    29281 tcgataaacg tggtgtacca gtaaatacca ttctggtgtc tgcactggta acggcgttgt
    29341 gcgtactgat taactacctt gccccagagt ccgctttcgg actgttaatg gcgctggtgg
    29401 tatctgcact ggtaatcaac tgggcgatga ttagcctggc gcatatgaaa ttccgtcgcg
    29461 ccaagcagga acaaggcgtg gtaactcgct tccctgctct gctttatccg ctgggtaact
    29521 ggatctgcct gctgtttatg gcggcggtac tggtgattat gctgatgacc ccaggaatgg
    29581 cgatttcggt atacctgatc ccggtatggc tgatcgtgtt aggtatcggc tatctgttta
    29641 aagagaaaac cgccaaagcc gtaaaagcgc attaatctct ctacgccctc acccgtacag
    29701 ggtgagggca ataatcttta caccaacgcc ccgtaaatcg tcagtagtgc aatcaccacc
    29761 acgaccacga acgaggtttt cttcgccatt gaaaccgctg ccttcggcgt ctccacctta
    29821 tcgacatgcg gttcacgcgc cagagagaac tgcgccagac gcgttaacac ctgatactgc
    29881 gaagtatgga agtcacccag cgaagcaaac caggccggta acgctttctc cccatgaccg
    29941 atcaaggcat ataccacacc cgcaagacga accggcaccc aatccagtac atgaagcacg
    30001 gcatcaatgc cggactgtaa acgatgatgc ggcgtctggt atcgcgccag ccagtattgc
    30061 catgcacgca aaaacgcata ccccatcagc gtaacgggtc cccagattcc ccccacaatc
    30121 aaccagaaca gcggagcaag ataaaaacga aagttaatcc acagcaatgc attttgcagc
    30181 tcacgcaaat actcacgttc atcgcagcct gccgggacgc cgtgaatcat ggtgagttcg
    30241 ccagccatcg tgacacgggc atggctatca ttacgtgaag cagctgtcag ataagcatga
    30301 taatgaagac gaactttacc tgcgccaata cacagcaaac caatcagcag ccacaccagc
    30361 agcgtgggaa cgttgaacaa tactccctgc aatgcgcgta acagtaaaaa agtcacgccc
    30421 atcgcaataa tggtcatgcc taacgtgcgc ccgagagaaa aatgtttcac ccgccgaaag
    30481 aacgcttcaa gacgatgatc aagctgccag tgctcgccca acttaaacag gcgctcgaaa
    30541 attaacacca gtaaggttgt aaatagcgtc atgttgtctc cttgctgacc agcgcacgaa
    30601 accgcgccca atcaaatgca gggccgggat cggttttccg atccggcgca atatcacaat
    30661 ggcccgtcat gttattagcg atatctggat agcgatcaat cagtgcccgc gtaaccgccg
    30721 caagctgttg atactgcgca tcggtatacg ccagcgtatc ggtgccttca agctcaatcc
    30781 caatagaaaa atcattgcag cgttcgcgcc cctgatactg agagactccc gcatgccatg
    30841 cacgtttatc gaaaggaaca tactggacta tttcaccatc acggcgaatc aaacagtgag
    30901 cggagacgcg caaatgggcg atctcagcaa agaaaggatg tgcctgcgga tcaatagttc
    30961 cagtgaataa tgcgtcgatc cacggaccgc caaactcgcc tggcggcagg ctaatattgt
    31021 gcaccaccag cagggtgggt gtttcgtcat ccgggcggca atcgtaatgt ggtgagggaa
    31081 cgcggcgcgc gccaaccagc cacccctgtt ctaacaacat gcaggatctc cttatatgtg
    31141 gtgctaatac ccggttcaga gtagcatgtt tctaccttat gattcgttag ctatctggag
    31201 ttttaacatg ccgcctcgcc gctataaccc tgacacccga cgtgacgagc tgctggaacg
    31261 cattaatctc gatatccccg gcgcggtggc ccaggcgctg cgggaagatt taggcggaac
    31321 agtcgatgcc aacaatgaca ttacggcaaa acttttaccg gaaaactctc gctctcatgc
    31381 cacggtgatc acccgcgaga atggcgtatt ttgcggcaaa cgctgggttg aagaggtgtt
    31441 tattcaactg gcaggcgacg atgtcaccat aatctggcat gtggatgacg gcgatgtcat
    31501 caacgccaat caacccttgt tcgaacttga aggcccatcc cgcgtgctgt taacgggcga
    31561 acgcactgcg cttaattttg tgcaaaccct ttcaggagtt gccagtaagg tacgccacta
    31621 tgtcgaatta ctggaaggca ccaacacgca gttgttggat acgcgcaaaa ccttacctgg
    31681 cctgcgttca gctctgaaat acgcggtact ttgcggcgac ggagcgaatc accgtctggg
    31741 gctttctgat gccttcctga tcaaagaaaa tcatattatt gcctccggct cagtgcgcca
    31801 ggccgtcgaa aaagcgtcct ggctgcaccc ggatgcgcca gtagaagtcg aagtagagaa
    31861 tctggaagaa cttgatgaag ccctgaaagc aggagccgat atcatcatgc tggataactt
    31921 cgaaacagaa cagatgcgcg aagccgtcaa acgcaccaac ggcaaggcgc tactggaagt
    31981 gtctggcaac gtcactgaca aaacactgcg cgaatttgcc gaaacgggcg tggactttat
    32041 ctccgtcggt gcgctaacta aacacgtaca agcactcgac ctttcaatgc gttttcgcta
    32101 attgctgaca gatttatccg ctccatcgcg ggcggataat ctccccttcc ccaactttct
    32161 tcgtaacgcc tcgcaaattt cttgtctttc gctgcaacga aataaaaaac ctcggaagct
    32221 gctttcccgt ttcgtttttt gcccctcgct tgtgctgatg gcgtttgcca aagtagcgcc
    32281 aaccaaatca aggagcgaaa cagatggaca agcaacgcgg ttttacactt atcgaactga
    32341 tggtggttat tggcatcatt gccattttaa gcgccattgg tattcccgct tatcaaaact
    32401 acctgcgcaa agctgcactc accgacatgc tacaaacctt tgtgccttac cgtaccgccg
    32461 tagagttgtg cgcgctggaa catggtg
//
LOCUS       DADMJB010000027        31371 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.027, whole genome shotgun sequence.
ACCESSION   DADMJB010000027 DADMJB010000000
VERSION     DADMJB010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 31371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31371
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.027"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(15..3296)
                     /locus_tag="JN078_001143"
     CDS             complement(15..3296)
                     /locus_tag="JN078_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5107 domain-containing protein"
                     /protein_id="HAY9040419.1"
                     /translation="MTPVKVWQERVEIPTYETGPQDIHPMFLENRVYQGSSGAVYPYG
                     VTDTLSEQKTLKSWQAVWLENDYIKVMILPELGGRVHRAWDKVKQRDFVYHNEVIKPA
                     LVGLLGPWISGGIEFNWPQHHRPTTFMPVDFTLEAHEDGAQTVWVGETEPMHGLQVMT
                     GFTLRPDRAALEIASRVYNGNATPRHFLWWANPAVKGGEGHQSVFPPDVTAVFDHGKR
                     AVSAFPIATGTYYKVDYSAGVDISCYKNVPVTTSYMAEKSQYDFVGAWCHDEDGGLLH
                     VANHHIAPGKKQWSWGHSEFGQAWDKSLTDNNGPYIELMTGIFADNQPDFTWLDAYEE
                     KRFEQYFLPYHSLGMVQNASRDAVIKLQRSKRGIEWGLYAISPLNGYRLAIREIGKCN
                     ALLDDAVALMPATAIQGVLHGINPERLTIELSDADGNIVLSYQEHQPQELPLLDVAKA
                     PLAAQDITSTDEAWFIGQHLEQYHHASRSPFDYYLRGVALDPLDYRCNLALAMLEYNR
                     ADFPQAVAYATQALKRAHALNKNPQCGQASLIRASAYERQGQYQQAEEDFWRAVWSGN
                     SKAGGYYGLARLAARNGNFDAGLDFCQQSLRACPTNQEVLCLHNLLLVLSGRQDNARV
                     QREKLLRDYPLNATLWWLNWFDGRSESALAQWRGLCQGRDVNALMTAGQLINWGMPTL
                     AAEMLNALDCQRTLPLYLQASLLPKAERGELVAKAIDVFPQFVRFPNTLEEVAALESI
                     EECWFARHLLACFYYNKRSYNKAIAFWQRCVEMSPEFADGWRGLAIHAWNKQHDYELA
                     ARYLDNAYQLAPQDARLLFERDLLDKLSGATPEKRLARLENNLEIALKRDDMTAELLN
                     LWHLTGQADKAADILATRKFHPWEGGEGKVTSQFILNQLLRAWQHLDAREPQQASELL
                     HAALHYPENLSEGRLPGQTDNDIWFWQAICANAQGDETEAMRCLRLAATGDRTINIHS
                     YYNDQPVDYLFWQGMALRLLGEQQTAQQLFSEMKQWAQEMAKTSIEADFFAVSQPDLL
                     SLYGDLQQQHKEKCLMVAMLASAGLGEVAQYESARAELTAINPAWPKAALFTTVMPFI
                     FNYVH"
     gene            3414..4607
                     /locus_tag="JN078_001144"
     CDS             3414..4607
                     /locus_tag="JN078_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311443.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HAY9040420.1"
                     /translation="MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAV
                     SNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACL
                     SPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDRTINLALAIHGQVDPVTGVSQT
                     MPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIG
                     SSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLK
                     SQPVNTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWL
                     YGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA
                     QLRQI"
     gene            complement(4671..5924)
                     /locus_tag="JN078_001145"
     CDS             complement(4671..5924)
                     /locus_tag="JN078_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019077397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HAY9040421.1"
                     /translation="MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVM
                     QAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQAN
                     FAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEK
                     QAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVP
                     HAHVVTTTTHKTLAGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVAL
                     KEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEAD
                     AALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS
                     INDEAVIERIKGKVLDICARYPVYA"
     gene            6252..7442
                     /gene="hmpA"
                     /locus_tag="JN078_001146"
     CDS             6252..7442
                     /gene="hmpA"
                     /locus_tag="JN078_001146"
                     /EC_number="1.14.12.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NO-inducible flavohemoprotein"
                     /protein_id="HAY9040422.1"
                     /translation="MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFN
                     MSNQRNGDQREALFNAIAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGEHL
                     LATLDEMFSPGQEVLDAWGKAYGVLANVFINREAEIYNENASKAGGWEGTRDFRIVAK
                     TPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGYR
                     IAVKREEGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDTPVTLISSGVGQTPMLA
                     MLDTLAKAGHTAQVNWFHAAENGDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAK
                     GQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFMQFTAKQLVDLGVKQENIYYECFGP
                     HKVL"
     gene            complement(7487..7825)
                     /gene="glnB"
                     /locus_tag="JN078_001147"
     CDS             complement(7487..7825)
                     /gene="glnB"
                     /locus_tag="JN078_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017373484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulatory protein P-II"
                     /protein_id="HAY9040423.1"
                     /translation="MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTE
                     LYRGAEYMVDFLPKVKIEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRI
                     RTGEEDDAAI"
     gene            complement(7886..9220)
                     /gene="glrR"
                     /locus_tag="JN078_001148"
     CDS             complement(7886..9220)
                     /gene="glrR"
                     /locus_tag="JN078_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator GlrR"
                     /protein_id="HAY9040424.1"
                     /translation="MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRV
                     LNREKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFS
                     FLTKPVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSV
                     LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVS
                     NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISAT
                     HRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVR
                     AFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFV
                     EARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE"
     gene            complement(9210..9923)
                     /gene="qseG"
                     /locus_tag="JN078_001149"
     CDS             complement(9210..9923)
                     /gene="qseG"
                     /locus_tag="JN078_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system QseEF-associated
                     lipoprotein QseG"
                     /protein_id="HAY9040425.1"
                     /translation="MRHIFQRLLPRRLWLAGLPCLALLGCVQNHNKPAIDTPAEEKIP
                     VYQLADYLSTECSDIWALQGKSTETNPLYWLRAMDCADRLMPAQSRQQARQYDDGCWQ
                     NTFKQGILLADAKITPYERRQLVARIEALSTEIPAQVRPLYQLWRDGQALQLQLAEER
                     QRYSKLQQSSDSELDTLRQQHHVLQQQLELTTRKLENLTDIERQLSTRKPAGNFSPDT
                     PHESEKPAPSTHEVTPDEP"
     gene            complement(10088..11515)
                     /gene="qseE"
                     /locus_tag="JN078_001150"
     CDS             complement(10088..11515)
                     /gene="qseE"
                     /locus_tag="JN078_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417051.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two component system sensor histidine kinase
                     QseE/GlrK"
                     /protein_id="HAY9040426.1"
                     /translation="MKRWPVFPRSLRQLVMLAFLLILLPLLVLAWQAWQSLNALSDQA
                     ALVNRTTLIDARRSEAMTNAALEMERSYRQYCVLDDPTLAKVYQSQRKRYSEMLDAHA
                     GVLPDDKLYQALRQDLNNLAQLQCNNSGPDAAAAARLEAFASANTEMVQATRTVVFSR
                     GQQLQREIAERGQYFGWQSLVLFLVSLVMVLLFTRMIIGPVKNIERMINRLGEGRSLG
                     NSVSFSGPSELRSVGQRILWLSERLSWLESQRHQFLRHLSHELKTPLASMREGTELLA
                     DQVVGPLTPEQKEVVSILDSSSRNLQKLIEQLLDYNRKQADSAVELENVELAPLVETV
                     VSAHSLPARAKMMHTDVDLKATACLAEPMLLMSVLDNLYSNAVHYGAESGNICLRSSS
                     HGARVYIDVINTGTPIPQEERAMIFEPFFQGSHQRKGVVKGSGLGLSIARDCIRRMQG
                     ELYLVDESGQDVCFRIELPSSKNTK"
     gene            complement(12073..15960)
                     /gene="purL"
                     /locus_tag="JN078_001151"
                     /gene_synonym="purI"
     CDS             complement(12073..15960)
                     /gene="purL"
                     /locus_tag="JN078_001151"
                     /gene_synonym="purI"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006683423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HAY9040427.1"
                     /translation="MMEILRGSPALSAFRINKLLARFQAARLPVHNIYAEYVHFADLN
                     APLNDDEHAQLERLLKYGPALASHAPQGKLLLVTPRPGTISPWSSKATDIAHNCGLQQ
                     VNRLERGVAYYIEAGTLTNEQWQQVTAELHDRMMETVFFDLDDAEQLFAHHQPTPVTS
                     VDLLGQGRQALIDANLRLGLALAEDEIDYLQDAFTKLGRNPNDIELYMFAQANSEHCR
                     HKIFNADWIIDGEQQPKSLFRMIKNTFETTPDHVLSAYKDNAAVMEGSEVGRYFADHE
                     TGRYDFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGAKPKAGLVG
                     FSVSNLRILGFEQPWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALNGYFRTY
                     EEKVNSHNGEELRGYHKPIMLAGGIGNIRADHVQKGEINVGAKLVVLGGPAMNIGLGG
                     GAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQLGDANPILFIHDVGAGGL
                     SNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNESQERYVLAVAADQLPLFDEL
                     CKRERAPYAVIGEATEELHLSLHDRHFDNQPIDLPLDVLLGKTPKMTRDVQTLKAKGD
                     ALVREGITIADAVKRILHLPTVAEKTFLVTIGDRSVTGMVARDQMVGPWQVPVANCAV
                     TTASLDSYYGEAMAIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANW
                     MAAAGHPGEDAGLYEAVKAVGEELCPALGLTIPVGKDSMSMKTRWQEGNEEREMTSPL
                     SLVISAFARVEDVRHTITPQLSTEDNALLLIDLGKGNNALGATALAQVYRQLGDKPAD
                     VRDVAQLKGFYDAIQALVAQRKLLAYHDRSDGGLLVTLAEMAFAGHCGINADIASLGD
                     DRLAALFNEELGAVIQVRAADREAVESVLAQHGLADCVHYVGQAVSGDRFVITANGQT
                     VFSESRTTLRVWWAETTWQMQRLRDNPECADQEHQAKSNDADPGLNVKLSFDINEDVA
                     APYIATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLTGRTGLEDFHAL
                     VACGGFSYGDVLGAGEGWAKSILFNDRVRDEFATFFHRPQTLALGVCNGCQMMSNLRE
                     LIPGSELWPRFVRNTSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEVR
                     DAAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTESGRVTIMMPHPE
                     RVFRTVSNSWHPENWGEDGPWMRIFRNARKQLG"
     gene            16220..17776
                     /gene="mltF"
                     /locus_tag="JN078_001152"
     CDS             16220..17776
                     /gene="mltF"
                     /locus_tag="JN078_001152"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417053.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltF"
                     /protein_id="HAY9040428.1"
                     /translation="MKKLKINYLFIGILALLLAVALWPSIPWFGKADNRIAAIQARGE
                     LRVSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNA
                     DLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQYRPRTLCNLTAEQLTVAPGHVV
                     VNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELA
                     VALDITDEQPVTWFSPLDGDNTLSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVD
                     TRTFLRAVDAVLPQLKPLFEKYAEEIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLT
                     KNTAQSLGITDRTDAEQSISGGVRYLQDMMSKVPESVPENERIWFALAAYNMGYAHML
                     DARALTAKTKGNPDSWADVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQIS
                     LVGYLQEKEKQATEAAMQLAQDYPAVSPTELGKEKFPFLSFLSQSSSNYLTHSPSLLF
                     SRKGSEEKQN"
     gene            complement(17773..18309)
                     /gene="tadA"
                     /locus_tag="JN078_001153"
     CDS             complement(17773..18309)
                     /gene="tadA"
                     /locus_tag="JN078_001153"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HAY9040429.1"
                     /translation="MRRAFITGVFFLSEVEFSHEYWMRHALTLAKRAWDEREVPVGAV
                     LVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCA
                     GAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFF
                     RMRRQEIKAQKKAQSSTD"
     gene            complement(18334..18969)
                     /gene="yfhb"
                     /locus_tag="JN078_001154"
     CDS             complement(18334..18969)
                     /gene="yfhb"
                     /locus_tag="JN078_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417055.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase C"
                     /protein_id="HAY9040430.1"
                     /translation="MATHERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNALLVLPL
                     LPIIAIALLIKGRAARWPMSLLLWGCTFGHSEARLQTLQADFVRWFRDNVTAFPLVQE
                     RLTTYLLSSDADIWLITGSPQPLVEAVYFDKPWLPRVNLIASQIQRGYGGWVLTMRCL
                     GHEKVAQLERKIGTPLRLYSGYSDSNQDNPLLYFCQHRWRVTPRGELQQLE"
     gene            19178..20026
                     /locus_tag="JN078_001155"
     CDS             19178..20026
                     /locus_tag="JN078_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417056.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HAY9040431.1"
                     /translation="MNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEA
                     GVSQSSVVKFAQKLGYKGFPALKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKL
                     IKENTAAMYATLNVNSEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGFN
                     AAAVRDMHALLATVQASSPDDLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPN
                     ALQQRASHCLYTIAEEQATNSASISACHAQGMLTDLLFIALIQQDLELAPERIRHSEA
                     LVKKLV"
     gene            20082..20342
                     /gene="yfhL"
                     /locus_tag="JN078_001156"
     CDS             20082..20342
                     /gene="yfhL"
                     /locus_tag="JN078_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster ferredoxin YfhL"
                     /protein_id="HAY9040432.1"
                     /translation="MALLITKKCINCDMCEPECPNEAISMGDHIYEINSDKCTECVGH
                     YETPTCQKVCPIPNTIVKDPAHVETEEQLWDKFVLMHHADKI"
     gene            complement(20536..20616)
                     /gene="shoB"
                     /locus_tag="JN078_001157"
     CDS             complement(20536..20616)
                     /gene="shoB"
                     /locus_tag="JN078_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin ShoB"
                     /protein_id="HAY9040433.1"
                     /translation="MTDCRYLIKRVIKIIIAVLQLILLFL"
     gene            complement(21036..21416)
                     /locus_tag="JN078_001158"
     CDS             complement(21036..21416)
                     /locus_tag="JN078_001158"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HAY9040434.1"
                     /translation="MAILGLGTDIVEIARIEAVIARSGERLARRVLSDNEWAIWKTHH
                     QPVRFLAKRFAVKEAAAKAFGTGIRNGLAFNQFEVFNDELGKPRLRLWGEALKLAEKL
                     GVVNMHVTLADERHYACATVIIES"
     gene            complement(21416..22147)
                     /gene="pdxJ"
                     /locus_tag="JN078_001159"
     CDS             complement(21416..22147)
                     /gene="pdxJ"
                     /locus_tag="JN078_001159"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708416.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HAY9040435.1"
                     /translation="MAELLLGVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITV
                     HLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVT
                     TEGGLDVAGQREKMRDACKRLTDAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTGCYA
                     DAKTDAEQAQELVRIAKAATFAASLGLKVNAGHGLTYHNVKAIAAIPEMHELNIGHAI
                     IGRAVMTGLKDAVAEMKRLMLEARG"
     gene            complement(22159..22887)
                     /gene="recO"
                     /locus_tag="JN078_001160"
     CDS             complement(22159..22887)
                     /gene="recO"
                     /locus_tag="JN078_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HAY9040436.1"
                     /translation="MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRS
                     TLKGALQPFTPLLLRFGGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVLEY
                     ETRFSELFFDYLHCIQSLAGATGTPEPALRRFELALLGHLGYGVNFTYCAGSGEPVDD
                     TMTYRYREEKGFIASVVIDNKTFTGRQLKALNAREFPDADTLRAAKRFTRMALKPYLG
                     GKPLKSRELFRQFMPKRTVKTHYE"
     gene            complement(22899..23804)
                     /gene="era"
                     /locus_tag="JN078_001161"
     CDS             complement(22899..23804)
                     /gene="era"
                     /locus_tag="JN078_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HAY9040437.1"
                     /translation="MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR
                     HRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT
                     PDDEMVLNKLRDGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL
                     NVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEI
                     ERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLE
                     LWVKVKSGWADDERALRSLGYVDDL"
     gene            complement(23801..24481)
                     /gene="rnc"
                     /locus_tag="JN078_001162"
     CDS             complement(23801..24481)
                     /gene="rnc"
                     /locus_tag="JN078_001162"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003848606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HAY9040438.1"
                     /translation="MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLG
                     DSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELK
                     SGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRL
                     QEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQ
                     ALKKLELE"
     gene            complement(24754..25728)
                     /gene="lepB"
                     /locus_tag="JN078_001163"
     CDS             complement(24754..25728)
                     /gene="lepB"
                     /locus_tag="JN078_001163"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HAY9040439.1"
                     /translation="MANMFALILVIATLVTGILWCVDKFFFAPKRRERQAAAQAAAGD
                     SLDKATLKKVAPKPGWLETGASVFPVLAIVLIVRSFIYEPFQIPSGSMMPTLLIGDFI
                     LVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDP
                     VSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETK
                     ENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNR
                     DNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGVRLSRIGGIH"
     gene            complement(25744..27543)
                     /gene="lepA"
                     /locus_tag="JN078_001164"
     CDS             complement(25744..27543)
                     /gene="lepA"
                     /locus_tag="JN078_001164"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010434076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HAY9040440.1"
                     /translation="MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSM
                     DLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVV
                     DAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR
                     CSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLR
                     KGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTL
                     ARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYEPESSSAL
                     GFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSREVIYVDSPSKLPA
                     VNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEV
                     VLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDALALITHRDNSQNRG
                     RELVEKMKDLIPRQQFDIAIQAAIGTHIIARSTVKQLRKNVLAKCYGGDISRKKKLLQ
                     KQKEGKKRMKQIGNVELPQEAFLAILHVGKDNK"
     gene            complement(27741..28220)
                     /gene="rseC"
                     /locus_tag="JN078_001165"
     CDS             complement(27741..28220)
                     /gene="rseC"
                     /locus_tag="JN078_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SoxR-reducing system protein RseC"
                     /protein_id="HAY9040441.1"
                     /translation="MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLG
                     PQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS
                     DVAALCGAVLGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ"
     gene            complement(28217..29173)
                     /gene="rseB"
                     /locus_tag="JN078_001166"
     CDS             complement(28217..29173)
                     /gene="rseB"
                     /locus_tag="JN078_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-E factor regulatory protein RseB"
                     /protein_id="HAY9040442.1"
                     /translation="MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYE
                     LSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGDEISYFEPGLEPFTL
                     NGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWM
                     DTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKA
                     KFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQM
                     LRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGAAQ"
     gene            complement(29173..29823)
                     /gene="rseA"
                     /locus_tag="JN078_001167"
     CDS             complement(29173..29823)
                     /gene="rseA"
                     /locus_tag="JN078_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma-E factor RseA"
                     /protein_id="HAY9040443.1"
                     /translation="MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMR
                     GDTPEVLHFDISSRVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLT
                     QMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANN
                     GQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ"
     gene            complement(29856..30431)
                     /gene="rpoE"
                     /locus_tag="JN078_001168"
     CDS             complement(29856..30431)
                     /gene="rpoE"
                     /locus_tag="JN078_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005070454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoE"
                     /protein_id="HAY9040444.1"
                     /translation="MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG
                     DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE
                     AENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIA
                     AIMDCPVGTVRSRIFRAREAIDNKVQPLIRR"
     gene            complement(30428..30583)
                     /gene="rseD"
                     /locus_tag="JN078_001169"
     CDS             complement(30428..30583)
                     /gene="rseD"
                     /locus_tag="JN078_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rpoE leader peptide RseD"
                     /protein_id="HAY9040445.1"
                     /translation="MIRLQHDKQKQMRYGTLQKRDTLTLCLLKLQLMEWRFDSAWKFG
                     LGRLYLG"
     gene            30839..>31371
                     /locus_tag="JN078_001170"
     CDS             30839..>31371
                     /locus_tag="JN078_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HAY9040446.1"
                     /translation="MNTLPEHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEG
                     STFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGV
                     LFDTHVQPNGEESYHLTREGGHSHRRILHAADATGREVQSTLVSKAQNHPNIRVLERS
                     NAVDLIVSDKIGLPGTRR"
BASE COUNT         7501 a         8403 c         7919 g         7548 t
ORIGIN      
        1 acagttaata gggtttagtg aacgtagtta aaaataaaag gcatcacagt ggtgaataat
       61 gccgctttcg gccaggccgg attaatcgcc gtcaattcag cgcgagcaga ctcatattgc
      121 gcaacctccc cgagtcccgc ggacgccagc atcgccacca tcaggcattt ttctttatgc
      181 tgctgttgta aatcgccata cagcgataac aggtcaggtt gtgaaacagc aaagaaatcc
      241 gcctcaatac tggttttcgc catctcttgc gcccactgtt tcatttcact aaacagttgc
      301 tgtgcggttt gctgttcacc cagcagtcgc agcgccattc cttgccagaa gagataatca
      361 accggctgat cgttgtaata actgtggatg ttaatggtgc gatcgccggt cgccgccaga
      421 cgtaaacaac gcatcgcttc agtttcatcg ccctgcgcgt tggcgcatat cgcctgccag
      481 aaccagatgt cgttatcagt ttgccccggt aaacggcctt cgcttaaatt ctccggataa
      541 tgcagcgcgg catgaagcag ttcgctggcc tgctgcggct ctctggcatc aagatgctgc
      601 caggcgcgta ataactggtt gaggataaac tgactggtga ccttcccttc cccgccttcc
      661 cacgggtgga atttacgcgt ggcgagaatg tccgccgctt tgtctgcctg acccgtgaga
      721 tgccacaaat tgagcagttc tgcggtcatg tcgtcgcgtt tcagcgcaat ttccagatta
      781 ttttccagac gcgccagtcg tttctccggt gtggctccac ttaacttatc aagcaaatcc
      841 cgttcgaaaa gcagacgtgc atcctgcggc gcaagctgat aagcattatc aagataacgc
      901 gcggccagct cataatcgtg ttgcttattc cacgcatgga tcgctaaccc gcgccagccg
      961 tcggcaaact ccggcgacat ctctacgcaa cgttgccaaa aggcaatggc tttgttgtag
     1021 ctacgtttgt tgtagtagaa gcaggccagt aaatggcgag caaaccagca ctcttcaata
     1081 ctctccagcg ccgccacttc ttccagcgta ttcgggaaac ggacaaactg cgggaagaca
     1141 tcaatggctt ttgcgaccag ttcgccacgt tcggctttcg gcagcaagct ggcttgcagg
     1201 taaagcggca gcgtgcgctg gcagtccagt gcgttcagca tctctgccgc cagggtgggc
     1261 attccccagt taatcagttg cccggcggtc atcagggcgt taacgtcgcg tccctgacac
     1321 agaccgcgcc actgcgcgag agctgattcg ctacgaccat cgaaccagtt cagccaccac
     1381 agagtggcgt tcagcggata atcgcgcagc agtttctcgc gctgcacacg cgcgttgtcc
     1441 tgacgaccac ttaacaccag cagcagatta tgcaggcaaa gcacttcctg attggttggg
     1501 caggcgcgaa gactttgttg gcaaaaatcc agaccagcgt cgaagttacc attacgcgcc
     1561 gccagtcgtg ccaggccata atagccaccg gctttgctgt tgccgctcca gaccgcacgc
     1621 cagaaatcct cttcggcttg ttgatattgt ccctgacgtt cgtaagcact ggcgcgaatc
     1681 aaactcgcct gtccgcactg cggatttttg ttcagcgcat gtgcgcgttt cagagcctga
     1741 gtggcatacg ccaccgcttg cgggaaatcg gcgcggttat attccagcat cgccagcgcc
     1801 aggttacagc ggtaatccag cggatccagc gccacgccgc gcaggtagta atcgaacggt
     1861 gaacggctgg cgtgatgata ttgctccaga tgctgaccga taaaccaggc ttcatctgta
     1921 ctggtaatgt cttgtgctgc cagtggcgct ttggcgacgt ccagcaacgg caactcttgc
     1981 ggctgatgtt cctgataact cagtacaata ttgccgtcgg catcggagag ctcaatggtc
     2041 agcctttcag gattgatacc gtgcaacacg ccctggatgg cggtcgcagg catcagtgcc
     2101 acggcatcat caagtaacgc gttgcatttg ccgatttcgc ggatcgccag gcggtatccg
     2161 ttcaacggag agatggcata cagcccccac tcaatccccc gcttactacg ctggagtttt
     2221 atcaccgcat cgcgggaggc attttgcacc atgcccaaag aatgataagg caggaaatac
     2281 tgctcaaaac gcttctcttc gtaagcatca agccaggtaa aatcgggctg gttatcggca
     2341 aaaataccgg tcatcagttc gatatacggg ccgttattgt cggtcagact cttatcccac
     2401 gcctggccaa attcactgtg tccccaactc cactgttttt tacctggcgc aatatggtgg
     2461 ttggcaacgt gcagcaaacc gccatcttca tcgtgacacc acgcgccgac aaaatcgtac
     2521 tgcgattttt cggccatata tgaggttgta acaggcacat ttttatagca agaaatgtcc
     2581 actccggcgg agtagtccac tttgtagtaa gtgccggtgg cgatggggaa agcggagacg
     2641 gcccgtttgc cgtgatcaaa caccgcagtc acatccggtg ggaaaacgct ctgatgccct
     2701 tccccccctt tcactgccgg gttggcccac cacaagaaat gacgcggcgt ggcgttaccg
     2761 ttatagacgc ggctggcgat ttccagcgcc gcccggtcag ggcgcagggt gaaacctgtc
     2821 atcacctgta aaccatgcat cggctccgtt tcgcctaccc acaccgtctg tgcaccgtct
     2881 tcatgggctt cgagggtgaa atcaacgggc ataaaggtgg tcgggcgatg atgttgcggc
     2941 cagttaaact caatcccacc ggaaatccac ggccccagca gccccaccag cgcaggttta
     3001 atgacttcat tgtgataaac aaaatcgcgc tgtttcactt tatcccacgc gcgatgcacc
     3061 cgaccgccca gttccggcag gatcatcact ttgatgtagt cgttttccag ccacaccgcc
     3121 tgccaggatt tcagggtttt ctgctcgctc agcgtatcgg tcacgccgta gggataaacc
     3181 gcgccggacg atccctgata aacgcgattt tccaggaaca tgggatgtat atcctgcggc
     3241 ccggtttcat aggtcgggat ctcaacgcgc tcttgccaca cttttactgg agtcatggtg
     3301 ccctcaatat taacaagaca tactgaatta aaagatttgt ggcagtgtat tgaacaatct
     3361 ggcaatgttt tcgcggaata atcacgcaat taactaaaca aggtttagtg aagatgagag
     3421 cctgcattaa caatcaacag attcgccacc ataacaaatg cgtgattctg gaactgctgt
     3481 accggcaaaa gcgcgccaat aaatcaacgc tggcccggct ggcgcaaatt tcgattccgg
     3541 cagtcagtaa tattttgcag gaactggaaa gcgaaaaacg ggtggtgaat attgacgatg
     3601 aaagccagac gcgcgggcat agtagcggta catggctgat tgcgccggaa ggtgactgga
     3661 cgctgtgcct gaacgtgacg cccaccagta ttgagtgtca ggttgctaat gcttgtttaa
     3721 gtccgaaagg tgaatttgag tatttacaga ttgatgcacc gacgccgcag gcgctgctgt
     3781 ccgaaatcga aaaatgctgg catcgccacc gtaaattgtg gccggaccgc accatcaatc
     3841 tggcgctggc aatccacggt caggttgatc cggtgaccgg cgtgtcgcaa accatgccgc
     3901 aagcgccgtg gacaacgccg gttgaggtga agtatctgct ggaagagaag ctgggcattc
     3961 gggtgatggt cgataatgac tgcgtgatgc tggcgctggc ggagaaatgg caaaataatt
     4021 cgcaggaacg ggatttctgc gtgatcaacg ttgattacgg cattggctcg tcgttcgtga
     4081 ttaacgagca aatttatcgc ggcagtttgt atggtagcgg acaaattggt cacaccatcg
     4141 ttaatccgga tggcgtcgtc tgcgactgtg gacgttacgg ctgcctggaa accgtcgcct
     4201 cgttaagtgc attaaaaaaa caggcgcggg tatggctaaa atcacaaccg gttaatactc
     4261 agcttgatcc tgaaaaactg acaaccgcgc agttaatcgc tgcctggcag agtggagaac
     4321 cgtggatcac cagctgggtt gatcgctctg ccaatgccat tggtttgagt ctgtataact
     4381 tcctcaacat cctcaatatt aatcagattt ggttgtacgg tcgcagttgt gcctttggtg
     4441 agaactggct taatactatt attcgccaga caggatttaa cccgttcgac cgcgacgaag
     4501 gaccgagcgt gaaagcgacg caaattggct tcgggcaatt aagccgcgca caacaggtgc
     4561 tgggaattgg ctatttgtat gttgaggcgc agttacgaca gatttgatgg cgcgataacg
     4621 tagaaaggct tcccgaagga agcctttttt caacagatta accgtttcgc ttatgcgtaa
     4681 accgggtaac gtgcgcagat gtcgagaact ttacctttga tgcgctcgat aacggcttca
     4741 tcattgatgc tgtccagcac gtcacacatc cagccagcca gttctttcgc ttctgcttct
     4801 ttgaagccgc gacgcgtaat tgccggagta cccacgcgaa taccggaggt cacaaacggg
     4861 ctcttcggat cgttcggtac gctgtttttg ttgacggtga tgttagcacg gcccagagcg
     4921 gcgtctgctt ctttaccggt caggttttta tcaaccagat caaccaggaa caggtggtta
     4981 tcagtgccgc cggaaaccac tttgtagccg cgctcgagga acacttctac catcgcttta
     5041 gcgtttttcg cgacctgctg ctggtaagtt ttgaactcag gctccatcgc ttctttcaga
     5101 gcaaccgctt taccggcgat tacgtgcatc aacggaccgc cctgaccacc agggaaaacg
     5161 gcagagttca gttttttgta cagctcttcg ctaccacctt tcgccaggat caggccgccg
     5221 cgcggacccg ccagggtttt gtgagtggtg gtagtaacaa cgtgagcatg aggaaccggg
     5281 ttcgggtaga cgccagcagc aaccaggccc gcaacgtgcg ccatatcaac gaacaggtaa
     5341 gcaccgatgc tgtcagcgat ttcacgcatt ttcgcccagt ccaccacgcc ggaatatgca
     5401 gagaaaccac cgataatcat tttcggcttg tgttctttgg cttgtttttc cagatcggcg
     5461 tagtcgatat gaccggtagc atcgataccg taaggaacga tgttgtacag tttaccggag
     5521 aagttaaccg gagaaccgtg agtcaggtga ccgccatgcg ccaggttcat acccagaacg
     5581 gtatcacctg gttccagcag cgcggtgtag accgcaaagt tagcctggga gccggagtgc
     5641 ggctggacgt tagcgtagtc agcgccgaac agttctttcg cacgatcgat cgccagttgt
     5701 tcaacgatat caacatactc gcaaccgccg tagtagcgtt tgcccggata accttcagca
     5761 tatttgttgg tcagctgaga accctgcgcc tgcattacgc gcgggctggt gtagttttcg
     5821 gaggcgatca gttcgatgtg ctcttcctga cgtacttttt cctgctccat agcctgccac
     5881 agttcggcat cataatcggc aatgttcatt tcacgcttta acatccgcat ctcctgactc
     5941 agctaacaat aaaatttttg gcctttatag gcggtcctgt tggacaacgg cgaacagtat
     6001 aaccgaatca ttgtgcgata acaggtcttg acaaaggaat ttacgcaaac gattaccttc
     6061 aggctacgca aggctttgga gaataaagag cttgcaaccg gaaacggatt tcttttcagg
     6121 tttgtgatgc aaatttttca cttcatcaca ttctttctga aaaacaccaa agaaccattt
     6181 acattgcagg gctatttttt ataagatgca tttgaaatac atcaattaag atgcaaaaaa
     6241 aggaagacca tatgcttgac gctcaaacca tcgctacagt aaaagccacc atccctttac
     6301 tggtggaaac ggggccaaag ttaaccgccc atttctacga ccgtatgttt actcataacc
     6361 cagaactcaa agaaattttt aacatgagta accagcgtaa tggcgatcaa cgtgaagccc
     6421 tgtttaacgc tattgccgcc tacgccagta atattgaaaa cctgcctgcg ctgctgccag
     6481 cggtagaaaa aatcgcgcag aagcacacca gcttccagat caaaccggaa cagtacaaca
     6541 tcgtcggtga acacctgttg gcaacgctgg acgaaatgtt cagcccgggg caggaagtgc
     6601 tggacgcgtg gggtaaagcc tatggtgtac tggctaatgt atttatcaat cgcgaggcgg
     6661 aaatctataa cgaaaacgcc agcaaagccg gtggttggga aggtactcgc gatttccgca
     6721 ttgtggctaa aacaccgcgc agcgcgctta tcaccagctt cgaactggag ccggtcgacg
     6781 gtggcgcagt ggcagaatac cgtccggggc aatatctcgg cgtctggctg aagccggaag
     6841 gtttcccgca tcaggaaatt cgtcagtact ctttgactcg caaaccggat ggcaaaggct
     6901 atcgtattgc ggtgaaacgc gaagagggtg ggcaggtatc caactggttg cacaatcacg
     6961 ccaatgttgg cgatgtcgtg aaactggtcg ctccggcagg tgatttcttt atggctgtcg
     7021 cagatgacac accagtgacg ttaatctctt ccggtgttgg tcaaacgcca atgctggcaa
     7081 tgctcgacac gctggcaaaa gcaggccaca cagcacaagt gaactggttc catgcggcag
     7141 aaaatggcga tgttcacgcc tttgccgatg aagttaagga actggggcag tcactgccgc
     7201 gctttaccgc gcacacctgg tatcgtcagc cgagcgaagc cgatcgcgct aaaggtcagt
     7261 ttgatagcga aggtctgatg gatttgagca aactggaagg tgcgttcagc gatccgacaa
     7321 tgcagttcta tctctgcggc ccggttggct tcatgcagtt taccgcgaaa cagttagtgg
     7381 atctgggcgt gaagcaggaa aacatttatt acgaatgctt tggcccgcat aaggtgctgt
     7441 aatttgatgt tgccggatgg aaacatccgg caacccttga cgcggtttaa attgccgcgt
     7501 cgtcctcttc accggtacgg atgcgaatga cccgtgccac gtcaaagacg aagattttac
     7561 cgtcaccgat tttgccggtt tgcgccgtgc gaataatggt atcgacacag gtatcgacaa
     7621 tgtcgtccgg tacgacaatc tcaattttca ctttcggcag aaaatccacc atatactccg
     7681 cgccgcggta cagctcggta tggcctttct ggcgaccaaa gcctttcact tcggtcaccg
     7741 tcatgccggt aataccgact tcggccagtg cttcgcggac atcgtccagc ttgaagggtt
     7801 ttataatcgc atcaatcttt ttcatgctat tccttgaaaa ggtcgcctgt cttttgatct
     7861 gctaaacgta acacataacg ccaattcatt ccttgaaatc gtttgcatcc agctcgtgtc
     7921 gggaaagcag tttataaaat tctgtccggt tgcgccccgc cattctcgcc gcgtgggtga
     7981 cgttgccttt ggtaatttgc agcagcttac gcaaatagtt gagttcaaac tgattacgtg
     8041 cctcaacaaa ggttggcagc gccgtgtttt caccctccag cgcctgctct actaatgcat
     8101 cgctaataac cggagatgag gtcagcgcca cgcactgttc aatcacgttg accaactggc
     8161 gcacattacc cggccagcta gcggtcatca ggcgtttcat cgcatcagtg gagaacgcgc
     8221 ggacaaacgg tttatgtcgc tctgccgcct ggcgcaacag gtgatttgcc agaagcggaa
     8281 tgtcttctgt gcgctctgcc agagccggaa ttttcaggct gacaacgttg aggcggtaat
     8341 agagatcttc gcggaattcc ccgcgcgcca tcgcttttgg cagatcacgg tgagtggcag
     8401 aaataatccg cacattgata tcaatatcgc ggttactgcc cagcgggcgc actttacgct
     8461 cctgcaacac gcgcagcagt ttgacctgta acggcgcagg catatcgcca atttcatcga
     8521 gaaatagcgt tccgccttcc gccgcctgga ataaaccttc gcgattgctg acagcgccag
     8581 taaacgcgcc acgcgcatga ccaaacagct ccgactccag caattgctcg ggcaatgcgc
     8641 cacagttaat agcaataaat ggtttgctgt tgcgcgggct ggcgttgtgg atagcctggg
     8701 cgaaaatctc tttcccggtg ccgctctgac cgttaatcaa aacgctgacg tctgattgcg
     8761 ccaccagccg cgcctgttcc agcaaacgca gcatcagcgg gctgcgggtg acaattgcct
     8821 cgcgccagcg ttcatcggtg gctggcgcgg attgctccag cgcatcgtca attgcctgat
     8881 atagcgcgtc tttgtcgaca ggcttggtga ggaaactaaa aacgccctgc tgtgttgcag
     8941 caacggcatc ggggatagaa ccatgcgcag taagaataat tactggcatt cccggctgca
     9001 ctttctggat ttcagcaaat agctgcatac cgtccatttc atccatccgc aggtcgctga
     9061 taactaaatc tactttttcg cgattcagta cccgtaatcc ttcagcgcca ctttccgccg
     9121 tgaccacact gtagccttcg ctggtcaggc gcaggccaag cagtttcagc aatcccggat
     9181 cgtcatcgac caataataaa tgcgcaggtt tatggctcat caggagtgac ctcatgggtg
     9241 gatggcgcgg gcttttcact ctcgtgcggc gtatccggcg agaaatttcc agccggtttg
     9301 cgggtcgaga gctggcgttc aatatcggtc aggttttcca gcttgcgggt ggtgagttcc
     9361 agttgctgct gtagaacgtg atgttgctgg cgcaatgtat ccagctcgct gtcgctggac
     9421 tgctggagtt tactgtaacg ttggcgctct tccgccagtt gcagttgcag cgcctgaccg
     9481 tcgcgccaga gttgatacag tgggcgaacc tgtgccggga tctcggtact taacgcttca
     9541 atacgcgcga ccagctggcg gcgctcatac ggcgtaattt tggcgtcggc gagcaaaatc
     9601 ccttgtttaa aggtattttg ccagcagccg tcgtcatatt ggcgagcttg ctgacgcgac
     9661 tgcgcaggca ttaaacgatc agcacaatcc atcgcccgca gccagtaaag cggattggtt
     9721 tcggttgatt taccttgcag cgcccagatg tcgctacatt cagtagaaag atagtcagcc
     9781 agttgataaa ccggaatttt ttcttctgct ggcgtatcaa tggctggctt attgtgattc
     9841 tgcacgcaac ccagcaatgc cagacatggc agccctgcca gccacagccg tcggggcaat
     9901 aatcgttgaa aaatgtgtcg catattcacc agacttaaag cctatcccag tgggcgtaat
     9961 tgttgcagac agtctggaca tggacagcgc ggagaaaccg gagcgtacat atcgtacgtg
    10021 aagatttcga gcactgcccg gagccgaact gacaaataaa atagcctgat aggataggct
    10081 gttagcatta tttcgtgttt ttcgacgacg gtaattcaat gcggaaacaa acgtcttgcc
    10141 cgctctcgtc gaccagatac agttcccctt gcatacggcg aatacaatcc ctggcaatgc
    10201 ttaatcccag accgctgccc ttcaccaccc cttttcgctg gtggcttccc tgaaaaaagg
    10261 gttcgaagat catggcgcgt tcctcttgcg gaatgggcgt gcctgtattg atgacatcaa
    10321 tataaacccg cgcaccatgt gaactgctgc gaaggcaaat gttaccggat tcagccccgt
    10381 agtgcaccgc attggagtaa agattatcca gtacgctcat cagcagcatt ggctccgcca
    10441 ggcaagctgt tgctttgaga tcgacgtcgg tatgcatcat tttagcccgt gcgggcaggc
    10501 tatgagcaga aaccactgtc tccaccagcg gtgctaattc aacattctcc agttccaccg
    10561 cactgtccgc ctgtttacgg ttgtaatcaa gcagttgttc gatcagtttt tgcaaattgc
    10621 ggctgctgct atcaagaatg ctcaccacct ctttttgctc tggcgtaagc ggcccgacaa
    10681 cctggtcagc cagtaattca gtgccctcgc gcatactcgc cagtggcgtt tttaattcat
    10741 gagataaatg tcttaaaaat tgatggcgtt gggattccag ccatgacagg cgctcactta
    10801 accaaagaat acgttgccca accgagcgta actcgctcgg tccactgaac gaaacgctat
    10861 tgcccagaga acgcccttcc cccagacggt tgatcatgcg ctcgatattt ttcaccggcc
    10921 cgataatcat ccgcgtgaaa agtagcacca tcaccagact caccagaaat agcaccagcg
    10981 attgccaacc aaaatattgc ccacgttcgg cgatttcacg ctgaagttgc tgcccacgag
    11041 agaacaccac tgtgcgcgtg gcctgcacca tttcggtatt ggcactggca aaggcttcaa
    11101 gacgcgcggc ggcggcagca tcgggaccac tgttgttaca ctgaagttgg gccagattgt
    11161 tcaaatcctg acgcaatgcc tggtaaagtt tatcgtctgg cagtacgcct gcgtgggcat
    11221 cgagcatttc gctgtaacgc ttgcgctggc tttgataaac cttcgcaagc gtagggtcgt
    11281 ccagcacgca atactgacgg tagctacgct ccatctccag cgccgcgttg gtcatcgctt
    11341 cactacgccg ggcatcaata agcgtagtgc ggttaaccag cgccgcctga tcgctaagcg
    11401 cattcaggct ttgccaggct tgccatgcca gcaccaacag gggtagtaga attagcaaaa
    11461 atgccagcat taccagttgt cgtaatgagc ggggaaaaac gggccagcgt ttcaaggtgt
    11521 tactctcgtc agacgcgaat agcctgatgc taaccgaggg gaagttcaga tacaacaaag
    11581 ccgggaatta cccggctttg ttatggaata aggcggtgcc taactcgacg tttcgcccga
    11641 tggttgatat agctacgctg atatcagaag ttggacggca ggcaccttgt tgtgcgtcat
    11701 tcgaatttta tgtagcacgt cccgaagggg ctgacataag tcggtgaatg agccactgct
    11761 tactattatg cagtaactgt gccaataaag aaaatagttt ggtaacgtac tgattatacg
    11821 ttgctttgag ggatttatgg cttcttcgct atttgaatgt aaatcagcca ctgtgtcgct
    11881 aaaaagagac agcttaagat aaacttatta gattacaata aaatcaatca cttaagtgtc
    11941 gccagaaagc gacacggtaa accacccatt gtcgtgattt acagacacaa aaaagctccc
    12001 ggagttggga gcttatgata gtggttggtg cttaatgccg catccgggct gcaaaaccaa
    12061 tgaactgatg aattacccca actgcttacg cgcattgcgg aaaatgcgca tccatgggcc
    12121 atcctcgccc cagttttccg gatgccagga gttgctgaca gtacggaaaa cacgttccgg
    12181 gtgcggcatc ataatggtga ctcgaccact ttcagtcgtg actgccgtaa taccgttcgg
    12241 tgaaccgttc gggttagccg ggtaggtttc agtgactttg ccgaagttat cgacatagcg
    12301 cagtgccacc agccctttgc tttccagtgc cgccagatgc gccgcatcac gcacttccac
    12361 gcgcccttca ccatgagaga cagcaatcgg catttgcgag cccaccatcc cctgcaacaa
    12421 cagagacggg ctttgggtta cttcaaccag gctgaaacgc gcttcaaagc gatcggaggt
    12481 attgcgcaca aaacgtggcc acaactcact acctgggatc agttcgcgca ggttagacat
    12541 catctggcaa ccgttacata cccccagcgc cagcgtttgc ggacggtgga agaaggttgc
    12601 aaactcatcg cgtacacggt cattgaacag gattgacttc gcccaacctt caccggcacc
    12661 cagcacatca ccgtaggaga aaccaccgca cgcgaccagg gcgtggaaat cttccaggcc
    12721 cgtgcgtccg gtcagcaggt cactcatatg cacgtcgata gcatcaaagc ctgcacggtg
    12781 gaaagctgcc gccatttcaa catgcgagtt cacgccctgc tcacgcagta cggcaacttt
    12841 cggacgtgcg ccagtggcaa tatacggtgc tgccacatct tcgttgatat cgaacgacag
    12901 ttttacattc aggcccggat cggcgtcgtt agatttcgcc tgatgctcct gatcggcaca
    12961 ctccgggttg tcacgcaggc gctgcatctg ccaggtagtt tctgcccacc agacacgcaa
    13021 cgtggtgcgg ctttcgctga atacagtctg cccgttggcg gtaatcacaa aacggtcacc
    13081 ggaaaccgcc tgccctacat aatggacaca atcagcaagc ccatgctgtg ccagtacgga
    13141 ctcgaccgct tcacggtcag cggcacgaac ctgaatcacc gcacccagtt cttcgttaaa
    13201 caacgccgcc aggcgatcgt cgcccagaga ggcaatatcc gcgttaatgc cgcaatgacc
    13261 agcaaaggcc atttccgcca gcgttaccag caggccgcca tcagagcggt cgtggtatgc
    13321 gagcagctta cgctgtgcaa ccagcgcctg aatcgcgtca tagaagcctt tcagttgcgc
    13381 gacgtcgcgt acatctgccg gtttgtcgcc aagctgacga taaacctgcg ccagcgccgt
    13441 tgcgcccagc gcgttattgc ctttgcccaa atcaatcagc aatagtgcgt tatcttcggt
    13501 agaaagctgt ggcgtgatgg tgtgacgcac atcttccacg cgggcaaatg cagaaatcac
    13561 cagcgacagc ggcgacgtca tttcgcgctc ttcgttacct tcctgccagc gggttttcat
    13621 cgacatagag tctttaccca ccgggatcgt caggcccagc gccggacaaa gctcttcgcc
    13681 cacggcttta acggcttcat acaggcccgc atcttcacca gggtggcctg ccgccgccat
    13741 ccagttggcg gaaagtttaa tgcgtttgat atcgccaatc tgtgttgcgg caatattggt
    13801 taacgcttca ccgaccgcca gacgggcaga ggcggcgaaa tccagcagcg caaccggcgc
    13861 acgctcgcca atcgccatcg cttcaccgta gtagctgtcg aggctggcgg tagtgaccgc
    13921 gcagttagcg accggcacct gccacggacc caccatctga tcgcgcgcta ccatgccagt
    13981 tacgctgcgg tcaccgatgg tcaccaggaa agttttctcc gccacggtcg gcagatgcag
    14041 tatgcgtttc accgcgtctg caatggtgat cccttcacgg accagcgcat cgcccttcgc
    14101 tttcagcgtt tgtacatcgc gggtcatctt cggcgtttta ccaagcagga cgtccagcgg
    14161 cagatcgatc ggctgattat caaaatgacg atcgtgtaga gaaagatgca gttcttcggt
    14221 cgcttcacca atcaccgcgt agggtgcgcg ctcacgctta cacagttcgt caaacagcgg
    14281 taattgatcg gcagcaaccg ccagcacgta gcgttcctgg gattcgttac accagatttc
    14341 cagcgggctc atgcctggct cgtcgctcag aatgtcgcgc agttcaaatt taccgccacg
    14401 cccgccgtcg ctcaccagtt ccggcatagc gttagaaaga ccgcctgcgc caacgtcgtg
    14461 gataaacagt attgggttgg catcaccaag ctgccagcaa cggtcaatca cttcctggca
    14521 gcgacgctcc atctccgggt tgtcgcgctg tacggaagca aagtcgaggt cggcatcaga
    14581 ctgaccagac gccatggaag acgccgcgcc gccgccaaga ccgatgttca ttgccgggcc
    14641 gccgagaacg accagcttcg cgccaacgtt gatctcgcct ttttgtacgt gatcggcgcg
    14701 aatgttgccg atcccgcccg ccagcatgat cggtttgtga taaccgcgca gctcttcgcc
    14761 gttgtggctg ttcacttttt cttcataagt acggaagtag ccgttcagtg ccggacgacc
    14821 aaattcgttg ttaaacgccg caccgcccag cgggccttcg gtcatgatgt ccagcgcggt
    14881 gacaatgcgc tcaggcttac cgaaatcttc ttcccacggc tgttcgaagc caagaattcg
    14941 caggttggaa acggagaaac caaccaaacc cgctttcggc ttcgcgccgc gcccggtggc
    15001 accttcatcg cggatttcac cgccggaacc ggtcgccgcg cccggccacg gagaaatcgc
    15061 cgtcgggtgg ttgtgagttt cgactttcat cagaatatgc gccggttcct gatggaaatc
    15121 atagcggccc gtttcgtggt cagcaaagta gcggcccact tcagaacctt ccattacggc
    15181 ggcgttatct ttataagcag agagaacgtg atctggcgtg gtttcgaaag tatttttgat
    15241 catcctgaac agcgatttcg gctgttgttc accgtcgata atccagtcgg cgttaaaaat
    15301 tttgtggcgg cagtgctcag agttcgcctg agcgaacata tacagctcga tgtcgttcgg
    15361 gttacgacca agctttgtga aagcatcctg cagatagtca atttcatctt ccgccagagc
    15421 caggccaaga cgcaggttag cgtcgatcag cgcctgacgg ccctgcccca gcaaatcaac
    15481 gcttgtgacc ggagtcggtt gatggtgggc aaacaactgc tctgcatcat ctaaatcaaa
    15541 aaagacagtt tccatcatgc ggtcgtgcag ttcagcggta acctgctgcc attgttcatt
    15601 ggtcagcgta ccggcttcta tatagtaagc aacgccgcgc tcaaggcggt ttacctgttg
    15661 tagcccgcag ttatgggcaa tatcggtcgc tttcgaagac cagggagaga tggtgccagg
    15721 acgcggggtc accagcagga gtttgccttg cggggcgtgg ctggcgagtg ccggaccata
    15781 tttcagcagg cgttcaagtt gtgcgtgctc atcatcgttt aacggcgcat tgaggtcagc
    15841 aaaatggaca tactcggcgt aaatattgtg aaccgggagc ctggcagcct gaaaacgtgc
    15901 cagcagtttg ttgattcgga atgccgacag tgcaggcgaa ccacgcagaa tttccatcat
    15961 aagtctctcg tcttctaagc tttcggtgta cccaaggggg ggggaaacgg gcgtcattat
    16021 aaagaatctg atgcgctgac gaaaccgttt gcgtggaaat aaaatcacca tcgtgaatta
    16081 gcaacgcgtg ccgccaatgg ctgtaataag ttgccatctg gcgcaggttt acgcaaaatg
    16141 ccgctcattt atgagtaaac ctttcactat tattacgttt tttcaagctg ggacgcgcac
    16201 gacacagaga attaactaat tgaaaaaatt aaagattaat tatctgttca tcggcattct
    16261 ggcactgctg ctcgcggtcg ctctctggcc atccattccc tggtttggta aagccgacaa
    16321 ccgtatcgcc gccattcaag cgcggggaga gttgcgtgtg agcaccattc atactcccct
    16381 gacttataac gaaatcaacg ggaaaccttt tggcctggat tacgaactgg cgaaacagtt
    16441 tgccgattac ctcggcgtaa aactgaaagt gaccgtgcgg cagaatatca gccagctgtt
    16501 tgacgacctt gataatggta acgccgacct gctggcggca ggactggtct ataacagtga
    16561 gcgggtaaaa aattatcagc ctggccctac ctattattcc gtgtcacaac aactggttta
    16621 taaagtgggt cagtatcgcc cacgtacgct gtgcaacctg acggcggagc aactcaccgt
    16681 tgcaccgggt catgtggtgg ttaacgatct ccagaccctg aaagaaacaa aattcccgga
    16741 attaagctgg aaggtagacg acaaaaaagg ctctgcggaa ttaatggaag atgtcatcga
    16801 aggaaaactc gattacacca ttgctgattc tgtcgccatc agcctgtttc agcgcgttca
    16861 cccggagctc gccgtagcgc tcgatatcac cgatgaacaa ccggtgactt ggtttagccc
    16921 gttagatggc gataataccc tttccgccgc cctgctcgac ttcttcaacg aaatgaatga
    16981 agacggtacg ctggcacgca ttgaagagaa atacctgggg catggcgatg attttgatta
    17041 cgtcgatacg cgcacatttt tacgcgccgt cgatgcggta ctgccgcagt taaagcccct
    17101 gtttgagaaa tacgccgaag aaattgactg gcgtttgctg gccgctattg cttatcagga
    17161 atcgcactgg gatgcacagg ccacttcacc gacgggtgtg cgcggcatga tgatgttaac
    17221 caaaaatacc gcgcaaagcc tcggcattac ggatcgtacc gatgccgaac agagcatcag
    17281 cggtggcgtg cgttatttgc aggatatgat gagtaaagtg ccggaaagtg tgccggagaa
    17341 cgagcggatc tggtttgccc tcgctgcgta caatatgggc tatgcgcata tgctggatgc
    17401 ccgcgccctg acggcaaaaa ccaaagggaa tcctgacagt tgggctgacg taaaacagcg
    17461 tctgccttta cttagccaga aaccctatta cagcaagctg acttacggct acgctcgtgg
    17521 acatgaagcc tacgcttatg tcgaaaatat tcgtaagtat caaattagcc tggtgggtta
    17581 tctgcaagag aaagagaagc aggctacaga agcggcgatg caactggcgc aggattatcc
    17641 ggcggtatcg cctacggagt tgggcaaaga gaaatttcct tttctctcgt ttctttccca
    17701 gtcgtcatca aactatttga cccattctcc ctctctgctg ttttccagga aagggagtga
    17761 agagaaacaa aattaatccg tcgaggattg cgcttttttc tgcgctttaa tttcctggcg
    17821 gcgcatgcga aagaagtcac tgagcaacgc cgcgcactca tccgccagta ttccttccgt
    17881 aatttccact cggtgattca tacccggatg atgcagcaca tccattaaag atcccgcagc
    17941 gccagttttc gcgtcacgcg caccaaagac cacgcgacca atgcgactgt ggatcatcgc
    18001 tccggcacac attacacatg gttcaagcgt gacatacaac gtggcgtcga tcagacgata
    18061 attttgcatc accagaccac cctgccgcag ggccatgatt tctgcatgtg cggtgggatc
    18121 atggcgacca atcgggcggt tccaaccttc gccgattacc cgattgttat gcactaatac
    18181 cgcgccgacc ggcacttccc gctcatccca ggcacgtttc gccagcgtca gcgcgtgacg
    18241 catccagtat tcgtggctaa attcgacttc agacaaaaag aaaactccgg ttataaaagc
    18301 gcggcgcatt atacacggac gctatgcttt actctattcc agttgctgga gttcaccgcg
    18361 cggggttact cgccaacgat gctgacagaa ataaagcagc ggattgtcct gattactgtc
    18421 gctatagcca ctgtacagcc gcagcggagt gccgattttg cgctccagtt gtgcgacctt
    18481 ttcatgtccc agacaacgca tcgtcaatac ccaaccacca tagccacgct gaatttggct
    18541 ggcgataaga ttaacccgcg gcagccaggg cttatcgaaa taaaccgctt caaccagcgg
    18601 ctgcggagag ccggtaatca accagatatc agcatcggaa cttaacaggt aggtggttaa
    18661 tcgctcctga accagcggaa aggcggtaac attgtcgcga aaccagcgca cgaaatcggc
    18721 ctgcaacgtc tgtaaacgtg cttcgctgtg accaaaagtg cacccccaca gaagcagact
    18781 catcggccag cgtgccgcac gaccttttat caataacgca atggctataa tcggtaacaa
    18841 cggcaggaca agtaacgcat tcagcggttg gcgacgtagt aaatagcgca gaaaactgcc
    18901 gaacatatcc tgctgatgca atgttccatc taagtcaaaa aacaccacac gacgctcgtg
    18961 agttgccaaa ccatactcct ctggactgaa acatcctgat taattttcgc tactacatag
    19021 cctaacagat agatcatcac ttttccggca acaatcgacc gcatcatggc taactggaat
    19081 ttttaattca tggcaattag cggcaatgga atataaaatt cactcgcgtg tgtctcatat
    19141 tgcctgttgt cgccactatt tcatcgcgag gaaagatatg aacggcttac ttcgtatccg
    19201 tcagcgttac caggggcttg cccagagtga taaaaaactg gcggattatc tgctgctaca
    19261 acctgatacg gcgcgccatt taagctctca gcaactggcc aacgaagccg gagtcagtca
    19321 gtccagcgtc gtgaagttcg cgcaaaaact cggctataaa ggttttccgg cgcttaagtt
    19381 ggcgttgagt gaagcgctgg caagccagcc ggaatcgccc tccgtgccca ttcataacca
    19441 aatccgcggt gatgatccgt tacggctggt cggcgaaaaa ctgattaaag aaaatactgc
    19501 cgctatgtac gcaacgctaa acgttaatag tgaagagaaa ctgcatgaat gcgtaacaat
    19561 gttgcgctct gcgcggcgga taattctgac cggtattggc gcttcgggtc tggtggcgca
    19621 aaactttgcc tggaagctga tgaagattgg cttcaatgct gccgcagtgc gcgatatgca
    19681 tgcgctactc gcaacagtac aggcgtcgtc ccctgacgat ctgttattag ccatttccta
    19741 caccggtgta cgacgcgagt taaacctggc ggcagatgag atgctgcgag tgggcggaaa
    19801 agtgctggcg attaccggct ttactccgaa tgccctgcaa cagcgtgctt ctcattgcct
    19861 gtataccatt gccgaagaac aagcgacaaa cagtgcttca atctctgctt gtcacgctca
    19921 gggaatgtta acggatttgc tgttcattgc gctgattcag caggatctgg aactggcacc
    19981 agaacgtatt cgtcatagtg aagcgctggt gaaaaaactg gtctgagtaa agaatgcgcg
    20041 tataatgccc gcccggtttg tgttgttttg agagtttcct tatggcgttg ttaatcacta
    20101 aaaaatgcat caattgtgat atgtgtgaac ccgaatgccc gaatgaggcg atttcaatgg
    20161 gagatcatat ctacgagatt aacagcgata agtgtaccga atgcgtaggg cactacgaga
    20221 caccaacctg ccagaaggtg tgcccgatcc ccaatactat tgtgaaagat ccggcgcatg
    20281 tcgagacaga agaacagttg tgggataaat ttgtgctgat gcaccacgcg gataaaattt
    20341 aatattctac tctggaagta gagtattaat tatattactg ggaagcctta acgccattat
    20401 atttatttaa ttgatgacat tagcataatc attcactaag ttaatttata tagtatctgc
    20461 caagacactt atttatagtt attaaaggcg cgtccgattg gttcaccgga cgcaccttaa
    20521 gtacgtttcc ttgtgttata agaacagaag gatcagctgt aaaacagcaa tgatgatttt
    20581 gatgacccgt ttaatcaggt atcggcaatc agtcattcgt ttttccttaa acaaggaatg
    20641 cagccgttca gattagccct tacatctccc caaaactgaa cgtgcgagtt attgagggtg
    20701 catgctgcac tccacaccag agctttgacg acaccactcg tttcaatggg ggaattctgt
    20761 ggcatggtgt aaagcacagc aaaatcttca ataacgaagc caattttaat gtacttacga
    20821 attggcggtc acgttaatct ttccatcaat attgctttct tcgtaaaggc tcgagttttt
    20881 atgctaaaga ttgcaagttg cttgtaaaag ataagtacac tgatccataa tcgctgttgt
    20941 tgagggtgca tgctgcacaa aattaaagtt aaaaagtaaa acccccgttc cttaccagtt
    21001 cgggggtttt actttttaaa gagaacggta ttattttaac tttcaataat taccgtggca
    21061 caagcatagt ggcgttcatc tgccagcgtt acatgcatat ttacaacgcc gagcttttcc
    21121 gccagtttta atgcctcacc ccatagccgt agccgtggtt tgccgagctc atcattgaat
    21181 acttcaaatt gattaaacgc cagaccattg cggatcccgg tgccaaacgc ttttgctgcg
    21241 gcttctttca cagcaaaacg cttcgccaga aaacgcaccg gctggtggtg cgttttccag
    21301 attgcccatt cgttatcgct taatacgcgg cgtgccaggc gctcaccgga tcgggcgatc
    21361 actgcttcta tgcgagcgat ctctacgata tccgtgccta aacctaatat tgccattagc
    21421 cacgcgcttc cagcatcaga cgcttcattt ctgccaccgc atctttcagt ccggtcatca
    21481 ctgcacggcc aataatggca tgaccgatat tcagttcatg catctcaggg atggcggcaa
    21541 tggctttcac gttgtgatag gtcagaccgt gtccggcgtt aactttcaga ccgagactag
    21601 cggcaaaggt cgcggctttg gcgatacgca ccagctcttg cgcctgttcg gcgtcagttt
    21661 tggcatcagc atagcaaccg gtgtggatct cgataaacgg tgcgccaacc tctgccgcag
    21721 ctttgatctg ctcttcatcg gcgtcgataa agagagaaac ctgaatcccg gcatctgtca
    21781 gacgtttgca ggcatcgcgc attttttcac gctgccctgc aacgtccagg ccgccttcgg
    21841 ttgttacttc ctgacgcttt tccggtacca ggcagcaaaa atgtggcttc gtctcaacgg
    21901 cgatcgccag catctcttcg gtcactgcca tctccagatt cattcgggta tccagcgtct
    21961 gccgcaggat gcgcacatcg cggtcagtaa tgtggcggcg atcttcacgt aaatgcacgg
    22021 taatgccgtc cgctcccgcc tgctcggcaa taaacgccgc ctgcaccgga tccgggtaag
    22081 cagtaccgcg tgcgttacgc agcgttgcaa tatggtcaat gttgacgcct aacagtaatt
    22141 cagccatgac aatcctcatc attcataatg tgttttcacc gttcgcttag gcataaactg
    22201 ccggaacagt tccctgctct ttaatggttt accgccaaga tacggcttaa gcgccatgcg
    22261 ggtaaagcgt ttcgcggcgc gtagtgtgtc tgcgtcagga aattcccgcg cgtttaacgc
    22321 ttttaactgc cttccggtga acgttttatt gtcgataacg acgcttgcga taaacccttt
    22381 ttcttcgcga taacgatacg tcatggtgtc atctaccggc tcgccgctac ccgcgcaata
    22441 ggtaaaattg acgccatagc ccagatgccc gagcagtgcc agttcaaagc ggcgcagcgc
    22501 gggttctggc gtaccagtgg cacctgcaag agactgaatg cagtgcaaat aatcgaaaaa
    22561 gagttcagag aagcgcgtct cgtattccag tacgcgggag agaagttcgt tgatgtacag
    22621 accgctgtaa agcgtgatac cgcttaatgg cagcgccagc gagacagctt cagcactgcg
    22681 cagcgttttg acttcgccac gcccgccgaa acgtagcaag agaggggtga aaggctgtaa
    22741 tgcacctttc agagtagagc gtttagagcg tgcgcctttg gcaaccagac gcacgcgacc
    22801 cgattcctcc gtgaagacgt ccagcatcag gctggtttcg ctccacgggc gactatgcag
    22861 gacaaatgcg cgctgccagc cttccatcgg agtgactctt aaagatcgtc aacgtaaccg
    22921 agactgcgca gtgcgcgttc gtcgtcggcc caaccggatt tcacttttac ccacagttca
    22981 aggtggacag gcgcttcgaa catttcctgc atgtctttac gcgcttcaat cccgatggtt
    23041 ttgatcttgg cccctttgtt gccaataacc atcttcttct gcccttcacg ctcaacgaga
    23101 atcaaaccat tgatgtcata accaccgcgt tcgttagaga cgaaacgttc gatctccacg
    23161 gtcacggagt acggcagttc agcgccgagg aaacgcatca gtttttcgcg gatgatttca
    23221 gacgccataa aacgctgtga gcgatcggtg atgtaatctt ccgggaagtg atgggtcgct
    23281 tcaggcagat gcttacgcac gattgctgcg atagtgtcga cattcagccc ggtttcagca
    23341 gagatcggca cgatatcgag gaagttcatc tgacttgcca ggaactgtaa gtgcggcagc
    23401 agatcggctt tttcctgcac gttatccact ttgttcaccg cgaggatcac cggcgctttg
    23461 ccatcgcgca gtttgttgag caccatttcg tcgtccggcg tccagcgggt gccttcaacg
    23521 acaaaaatca ccagctcaac gtcgccaata gagctgctcg ccgctttgtt catcaggcgg
    23581 ttaatagcgc gtttttcttc catatgcagg ccaggggtat caacgtagat cgcctgatac
    23641 gcgccttcag tatggatccc cacaatgcgg tgacgagttg tttgcgcttt gcgggaggtg
    23701 atggagatct tctgccccag cagtttgttc aacaatgtgg atttgccaac gttcggacgt
    23761 ccgacgatgg caataaatcc gcagtaactt ttatcgatgc tcattccagc tccagttttt
    23821 tcaacgcctg ttcggcggca gcctgctcag ccttacgacg gcttgaacct gtgccaacca
    23881 ccggttcact caggccgctg acctggcagt ggatagtaaa ttcctgatcg tgcgcttcgc
    23941 cacgtacctg gactaccaga taagtcggca gcggcagatg gcgaccctgc aaatattctt
    24001 gcaagcgcgt tttcggatct ttttgtttat cgcctgggct aatttcgtcc aaacgagttt
    24061 gataccagtt gaggattaat ttctcgacgg tttgaatatc actgtcgagg aatacgccac
    24121 caattaatgc ttcgacggta tcggcgagaa ttgactcacg acgaaatcca ccgcttttaa
    24181 gttcaccagg ccctaaacgt aagcactcgc ctaactcaaa ttcgcgcgcc agttccgcca
    24241 gcgtattgcc acggaccagc gtggcgcgca tccggctcat atcgccttca tccacacgag
    24301 ggaaacggtg ataaagcgca ttggcgataa cgtagctcag aatagagtcg cctaaaaatt
    24361 ctaaacgctc gttatgtttg ctgctggcac tacgatgagt taatgcctgc tgcaacagtt
    24421 cctgatgatt aaaagtgtag cccagcttcc gttgaagccg attaattacg atggggttca
    24481 tgcgatacca ataaataaat gcgtcaacaa ttcagcacac gaaacagacc tgatatacat
    24541 ggctctgcta actgcttcgc tgcagtttca gtttaccggt atatggggac caacgctgtt
    24601 tcgtgtgccg tggcaacctg gaggtgccaa ccttaaactt cgggggaata ttctatacac
    24661 aacgacgggg gatgtcgtta gccacgggag atttatctca taaataattc acgttgtcgc
    24721 cataacggcg acaacgtgaa cgaagatggg ctattaatgg atgccgccaa tgcgacttaa
    24781 gcgcacacct gtcggccatt cgccttcttg cttatcgaaa ctcatccaga tagccgttgc
    24841 ccgaccgacc agattcgctt caggcacaaa accccagtaa cggctgtccg cgctgttgtc
    24901 gcggttgtcg cccatcatga agtattgtcc cggcggaaca atccaggttg ccagttgttg
    24961 ccctggctgt tggtaataca tccccacctg gtcctgcgca atcggcactg tcagaattcg
    25021 gtgcgtcaca tcacccagtg tctctttacg ctcggaaaga cgaattccat tttctttggt
    25081 ttcgtttttc ggcacttcaa agaatccgct ggtcgcttcc ccaccattac ggcgtgagaa
    25141 ggtctgaacg aaatcgctcg gttccacgtt ggagtaggtg accggtagcg cgttttcaca
    25201 cgcctggccg gaactgcatc ccggttgaat cgtcagctct tttgagaccg gatcgtaagt
    25261 gactttatcg cccggtaaac ccaccgcgcg cttgatgtaa tcaagctttg gatcttccgg
    25321 atatttaaag accacgatat cgccgcgttt cggatgaccg gtttcgatca gcgttttctg
    25381 gtagatagga tctttaatgc cataagcaaa cttctctacc agaataaaat caccgattaa
    25441 cagagtcggc atcatcgaac ctgacgggat ctggaacggt tcataaataa acgaacgtac
    25501 aatcaatacg atagccagca ccggaaaaac agaagcaccg gtttccagcc agccaggctt
    25561 cggcgcaacc tttttcaggg ttgctttatc cagtgagtca ccggcagccg cctgcgccgc
    25621 tgcctgacgt tcccgccgtt taggtgcgaa aaagaattta tccacgcacc ataaaatgcc
    25681 cgtcaccagt gtggcaatca ccagaatcag ggcaaacata ttcgccatgc caactcctaa
    25741 gggttatttg ttgtctttgc cgacgtgcag aatggcgagg aacgcttcct gcggcagctc
    25801 gacgttaccg atctgcttca tgcgtttctt accttctttc tgcttctgca gcagcttttt
    25861 cttacggctg atatcgccgc cataacattt agccagtacg tttttacgca gctgtttcac
    25921 ggtggatcgc gcaataatgt gcgtaccaat cgctgcctga atggcgatat caaactgctg
    25981 gcgtgggatc agatctttca tcttctccac caactcgcga ccgcggtttt gcgaattatc
    26041 acggtgggtg atcagcgcca acgcatcaac acgttcaccg ttgattaata cgtctacacg
    26101 taccatgtcg gacgcctgga agcgtttgaa gttgtaatcc agagacgcat aaccacgcga
    26161 ggtagatttc aggcgatcga agaagtcgag caccacttcc gccatcggga tctcgtacgt
    26221 cagcgccacc tgattaccgt ggtaaaccat attggtctgc acgccgcgtt tttctacgca
    26281 cagcgtaata acgttgccga gatatgcctg cggcagcagc atgtgacact ctgcaatcgg
    26341 ctcgcgcagt tcgtaaatgt tatttaccgc aggcagcttg gatgggctgt cgacgtagat
    26401 aacttccctt gacgtggttt caacttcata cactacggtc ggcgcagtgg tgatcagatc
    26461 cagatcgtat tcacgttcca gacgttcctg gatgatctcc atgtgcagca ggccaaggaa
    26521 gccgcagcgg aaaccaaagc ccagcgcgct ggagctttcc ggctcataga acagtgaggc
    26581 atcattcagg ctgagtttac ccagcgcgtc acggaaggct tcatagtcgt cggaacttac
    26641 cgggaacaga ccggcgtata cctgcggttt gactttctta aagccaggca gcgccttttc
    26701 tgccggatta cgcgccagcg ttaaggtatc gccgactgga gcgccgtgga tatctttaat
    26761 cgcacatacc agccagccta cttcgccaca tttcagttca gtgcggtcaa cctgtttcgg
    26821 cgtgaagatg cccagacggt cggcgttata ggtctgcccg gtactcatga ctttcacttt
    26881 gtcgccctta cgcagggtgc cgtttttaat acggataagt gaaacaacgc ccaggtagtt
    26941 gtcgaaccat gagtcgataa ttagtgcctg caacgggcct tccggatcgc cttccggcgg
    27001 cggaatgtcg cgcaccagac gttcgagaac gtcctgcacg ccaacgccgg ttttcgctga
    27061 acagcgcacc gcgtcagtgg cgtcgatgcc gacgatatct tcaatttctt ccgccacgcg
    27121 ttcaggatcg gctgccggca ggtcaatctt gttcagtact ggcaccactt cgagatccat
    27181 ttccatggcg gtgtagcagt ttgccagggt ttgcgcttcc acgccctgcc cggcgtcgac
    27241 caccagcaat gcaccttcac aggcagccag cgaacgggaa acttcatagg agaagtctac
    27301 gtggcccggg gtgtcgataa agttaagctg ataggtttcg ccgtcagacg ctttgtagtc
    27361 cagcgtcacg ctttgcgctt tgatggtaat gccacgctca cgctcaagat ccatggaatc
    27421 gagaacctgc gcctccattt cacggtcaga caggccaccg cagatctgga taatacggtc
    27481 agacagcgtc gatttaccgt ggtcaatgtg agctatgatc gaaaagttac gtatattctt
    27541 cataaagtat gattattgtg ccttaatgcc cggttaacca ggcttttaga agtcgctgtt
    27601 ctgagcttaa cgtctgtatt aatagaaacg ccgcattcta cactacaaca ttgaggcgag
    27661 gaaatgttca taccgtatgg attgtggtat ctggaaacgt cctcgcattt gttatgcaaa
    27721 atgcaacaaa gccagtgaaa tcactggctc gcgtcttccg aagatgtttc aaatcgcaca
    27781 aggccaggcg gcaatgccac gcttaagatg atcggttgcc attctgcccg ggcagcaaac
    27841 ttacgcgagt agccgcgcgc aatcaggaac ccgccaatac cgccgaggac cgcaccacat
    27901 aatgctgcga cgtcagaagc aaagagtagc tgaaatagcg aagcgatgag gaataatccc
    27961 accagcggcg acatataaac cagtaatgcg gagctaagca ggctgccttc ggcgatcccc
    28021 aattccactt tttgccccgg cactaacggt tcatcacagg gtacgacaat ggtatgcgtg
    28081 gtttgcgggc caagtttatt caacacgcgg ctaccgcaac cggcgcgtga agcgcagctg
    28141 ctgcatgaag ctttaacatc acaactgacc agcgcctgcc cgttttgcca ggagacgacg
    28201 gtagcccact ctttgatcat tgcgctgccc cgaacttaat attctcggca atgcgtttcg
    28261 ccgtttgcgg cggcagttca ccgacaatgg tgatttcggc gttatcacgt acgcttgtac
    28321 tgacggttct gcgtccggtg cgcaacatct gatcggtgct cgatggcgta gcgcggttaa
    28381 cgtttaccga gaagctgaat aatccgtcag aatagagacg tgattcgata ggcatgttgt
    28441 ccatcgtcgg tagcggacgt cgactactgg aaacttcgct aaaaccctgt ggcaaccagg
    28501 ttggcgtcca gctgaattta gctttttcac ctacaggaac agaaagcaac ggcggcaaat
    28561 ttgccttcgc cagcgtctgc atactgctgc tgatatcctg attgacgtta aaagcaatca
    28621 cgcgaaattg ttccagcgtt tcaccatcgc gatcaaggag atcaacccgc atcggtaatt
    28681 tcgattcggt gtccatccac acgatgtagc tgtagcgtgt accatctcgg gcaaccacgc
    28741 gaatgacttc gcaaagacga tcagcaatac gcgtgcgccc gacggagata aagtcgtagt
    28801 aaggagaaag gcgtttgaaa tcggtataga tgagcgatgg cagagaatca acaatgtaat
    28861 cgccattaag cgtgaacggt tcaagtcccg gttcaaaata gctgatttca tcgccgcgct
    28921 gtaccacttc ccggcgcggg ccatccattt gcaacaattg tgcaagagga cggttatcga
    28981 ggcgtgcatg tcgataacgc agagactcaa caccctgttt attgatgctg atgaatgaca
    29041 gctcgtaatt cagtgactga ctggccaggt tcatctgctg taataacgcc ccggacgcgg
    29101 gagtggccga ggcgttagca gagaataaca ggctacctgt cactaatgac atggcaaacc
    29161 aaagttgctt cattactgcg attgcgttcc taaagtttga attcctggca cctgtacagc
    29221 ggcttgctgg gtttgcgcct gctcaaactg aagctgttca gagtggagtc ggcgttgcag
    29281 ttcgtaatcc tgcaacattg cattaatgcg acgacgctgc tcctgtacct gctgctgttg
    29341 accattgttt gcggtcgctt cagaaggtac tcccaggctt accgggctgg ctttacccat
    29401 catcggcagt gtattaaata ccggcgtttc gggctgctgg gacgtttcag attgtccatt
    29461 atagtgctgg acgccaacga taactgcaag cgatacgcat gctgctacgc ccatttgggt
    29521 aagctgtgcc gcccacggac gtactttctg ccagaatggc attttctgcc attgatgcgg
    29581 cgcaggctgg gcttccggga tcaatgtcgc cggttgacgt actggctctt cttcaatggc
    29641 ggccatcacg cgtgaagaga tatcgaaatg gagcacctcg ggagtatcac cccgcattga
    29701 gtcacggatt aagtgatagc tttcccaggt tttctgcatt tctgggttat gagccagttc
    29761 gttaagcagc tcactatcca gcgtttcgcc atccattaaa gcggaaagtt gttctttctg
    29821 catgcctaat acccttatcc agtatcccgc tatcgtcaac gcctgataag cggttgaact
    29881 ttgttatcaa tagcttccct cgctcggaag atacgtgaac gcaccgtacc taccggacaa
    29941 tccatgatag cggctatctc ttcatagctc aggccatcca gctcccgcaa ggttattgcc
    30001 atgcgcaaat cttccgggag ggactcaata gttcggaaaa ctatctgtct cagttcttct
    30061 gacaacatta agttctcagg gttcgaaatt tctttcaacg cgccgccact ttcgaagttt
    30121 tcagcttcaa tggcatccac atcactggaa ggtggacgac gcccctgagc aaccaggtaa
    30181 tttttcgctg tatttacagc aatccgatac agccatgtat aaaaagcgct atctccccgg
    30241 aacgaatcca gcgcacgata ggctttaata aaagcttctt gtaccacatc gggaacatca
    30301 cccgacggca catagcggga aaccagactc gccactttat gctgatagcg cactaccagt
    30361 aagttaaagg ctttctgatc tcccttctgg acccgttcaa ccaggacctg gtccgttaac
    30421 tgctcgctca tccgaggtaa agtctcccca aaccaaattt ccacgcgcta tcgaaacgcc
    30481 actccattag ctgcaatttg agcaagcaaa gggttagagt gtctcgtttt tgtaaagttc
    30541 cgtaacgcat ctgtttttgt ttgtcatgct gtagacggat cattatctat cattataagt
    30601 ctacagaatc tgaacatcgc attatctgtg tagaaatgcc catttaactg cctgaagagt
    30661 aacccaacgg cctttttatt tcaccaccta atcctccacc agccagtaac ttctcttttt
    30721 ctcgccgccc tgcatcagcg tgtttagcaa ctgtaacaaa tattaaaata gcaggtgttt
    30781 attcgcacaa catgatgcta tgctgaccaa accgtgttta gtaaattaaa caaagaaaat
    30841 gaatactctc cctgaacatt catgtgacgt gttgattatt ggtagcggcg cagccggact
    30901 ttcactggcg ctacgcctgg ctgaccagca tcaggtcatc gttctaagta aaggcccggt
    30961 aacggaaggt tcaacatttt atgcccaggg cggtattgcc gccgtgtttg atgaaactga
    31021 cagcattgac tcgcatgtgg aagacacatt gattgccggg gctggtattt gcgatcgcca
    31081 tgcagttgaa tttgtcgcca gcaatgctcg ttcctgtgtg caatggttaa ttgaccaggg
    31141 ggttttgttt gatacccacg ttcaaccgaa tggcgaagaa agctaccatc tgacccgtga
    31201 aggaggacat agtcaccgtc gtattcttca tgccgccgac gccaccggta gagaagtaca
    31261 atccacgctg gtgagcaagg cgcagaacca tccgaatatt cgtgtgctgg agcgcagcaa
    31321 cgcagttgat ctgattgtct ctgacaaaat tggcctgccg ggcacgcgac g
//
LOCUS       DADMJB010000028        31139 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.028, whole genome shotgun sequence.
ACCESSION   DADMJB010000028 DADMJB010000000
VERSION     DADMJB010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 31139)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31139)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31139
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.028"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(457..2148)
                     /gene="fruA"
                     /locus_tag="JN078_001171"
     CDS             complement(457..2148)
                     /gene="fruA"
                     /locus_tag="JN078_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIBC"
                     /protein_id="HAY9040447.1"
                     /translation="MKTLLIIDANLGQARAYMAKTLLGAVARKAKLEIIDNPNDAEMA
                     IVLGDSIPNDSALNGKNVWLGDISRAVAHPELFLSEAKGHAKPYTAPVAATAPVAASG
                     PKRVVAVTACPTGVAHTFMAAEAIETEAKKRGWWVKVETRGSVGAGNAITPEEVAAAD
                     LVIVAADIEVDLAKFAGKPMYRTSTGLALKKTAQELDKAVAEATPYEPAGKAQTATTE
                     GKKESAGAYRHLLTGVSYMLPMVVAGGLCIALSFAFGIEAFKEPGTLAAALMQIGGGS
                     AFALMVPVLAGYIAFSIADRPGLTPGLIGGMLAVSTGSGFIGGIIAGFLAGYIAKLIS
                     TQLKLPQSMEALKPILIIPLISSLVVGLAMIYLIGKPVAGILEGLTHWLQTMGTANAV
                     LLGAILGGMMCTDMGGPVNKAAYAFGVGLLSTQTYGPMAAIMAAGMVPPLAMGLATMV
                     ARRKFDKAQQEGGKAALVLGLCFISEGAIPFAARDPMRVLPCCIVGGALTGAISMAIG
                     AKLMAPHGGLFVLLIPGAITPVLGYLVAIIAGTLVAGLAYAFLKRPEVDAVAKAA"
     gene            complement(2165..3103)
                     /gene="fruK"
                     /locus_tag="JN078_001172"
     CDS             complement(2165..3103)
                     /gene="fruK"
                     /locus_tag="JN078_001172"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HAY9040448.1"
                     /translation="MSRRVATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGIN
                     VAKVLKDLGIDVTVGGFLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGE
                     VTDFNFSGFEVTPADWERFVTDSLSWLGQFDMVCVSGSLPSGVSPEAFTDWMTRLRSQ
                     CPCIIFDSSREALVAGLKAAPWLVKPNRRELEIWAGRKLPEMKDVIEAAHALREQGIA
                     HVVISLGAEGALWVNASGEWIAKPPSVDVVSTVGAGDSMVGGLIYGLLMRESSEHTLR
                     LATAVAALAVSQSNVGITDRPQLAAMMARVDLQPFN"
     gene            complement(3103..4233)
                     /locus_tag="JN078_001173"
     CDS             complement(3103..4233)
                     /locus_tag="JN078_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused PTS fructose transporter subunit IIA/HPr
                     protein"
                     /protein_id="HAY9040449.1"
                     /translation="MFQLSVQDIHPGEKAGDKEEAIRQVAAALVQAGNVAEGYVNGML
                     AREQQTSTFLGNGIAIPHGTTDTRDQVLKTGVQVFQFPEGVTWGDGQVAYVAIGIAAS
                     SDEHLGLLRQLTHVLSDDSVAEQLKSATTAEELRALLMGEKQSEQLKLDNEMLTLDIV
                     ASDLLTLQALNAARLKEAGAVDATFVTKAINEQPLNLGQGIWLSDSAEGNLRSAIAVS
                     RAANAFAVDGETAAMLVSVAMNDDQPIAVLKRLADLLLDNKADRLLKADAATLLALLT
                     SDDAPTDDVLSAEFVVRNEHGLHARPGTMLVNTIKQFNSDITVTNLDGTGKPANGRSL
                     MKVVALGVKKGHRLRFTAQGADAEQALKAIGDAIAAGLGEGA"
     gene            4601..5782
                     /gene="setB"
                     /locus_tag="JN078_001174"
     CDS             4601..5782
                     /gene="setB"
                     /locus_tag="JN078_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar efflux transporter SetB"
                     /protein_id="HAY9040450.1"
                     /translation="MHNSPAVSSAKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTD
                     EVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWN
                     RNYFVLLFVGVFLSSFGSTANPQMFALTREHADKTGREAVMFSSFLRAQVSLAWVIGP
                     PLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMQKELPLATGTVEAPRRNRRDT
                     LLLFVICTLMWGSNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFA
                     KRLGKRFLMRVAAVGGVCFYAGMLMAHSPAILLGLQLLNAIFIGILGGIGMLYFQDLM
                     PGQAGSATTLYTNTSRVGWIIAGSVAGIVAEIWNYHAVFWFAMVMIIATLFCLLRTKD
                     V"
     gene            complement(5779..6033)
                     /locus_tag="JN078_001175"
     CDS             complement(5779..6033)
                     /locus_tag="JN078_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HAY9040451.1"
                     /translation="MECRPGCGACCTAPSIFSPIPGMPDGKPANTPCIQLDEQQRCKI
                     FTSPLRPKVCAGLQASAEMCGNSRQQAMTWLIDLEMLTAS"
     gene            6188..6760
                     /gene="yeiP"
                     /locus_tag="JN078_001176"
     CDS             6188..6760
                     /gene="yeiP"
                     /locus_tag="JN078_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007750416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P-like protein YeiP"
                     /protein_id="HAY9040452.1"
                     /translation="MPRANEIKKGMVLNYNGKLLLVKDIDIQSPTARGAATLYKMRFS
                     DVRTGLKVEERFKGDDIVDTVTLTRRYVDFSYVDGNEYVFMDKEDYTPYTFTKDQIEE
                     ELLFMPEGGMPDMQVLTWDGQLLALELPQTVDLEIVETAPGIKGASASARNKPATLST
                     GLVIQVPEYLSPGEKIRIHIEERRYMGRAD"
     gene            6983..8449
                     /locus_tag="JN078_001177"
     CDS             6983..8449
                     /locus_tag="JN078_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol dehydrogenase family protein"
                     /protein_id="HAY9040453.1"
                     /translation="MKTIASVTLPHHVHAPRYDRQQLQSRIVHFGFGAFHRAHQALLT
                     DRVLNAQGGDWGICEISLFSGDQLMSQLRAQNHLYTVLEKGADGNQVIIVGAVHECLN
                     AKLDSLAAIIEKFCEPQVAIVSLTITEKGYCIDPATGALDTSNPRIIHDLQTPEEPHS
                     APGILVEALKRRRERGLTPFTVLSCDNIPDNGHVVKNAVLGMAEKRSPELAGWIKEHV
                     SFPGTMVDRIVPAATDESLAEISQHLGVNDPCAISCEPFIQWVVEDNFVAGRPAWEVA
                     GVQMVNDVLPWEEMKLRMLNGSHSFLAYLGYLSGFAHISDCMQDRAFRHAARTLMLNE
                     QAPTLQIKDVDLTQYADKLIARFANPALKHKTWQIAMNGSQKLPQRMLAGIRIHLGRE
                     TDWSLLALGVAGWMRYVSGVDDAGNAIDVRDPLSDKIRELVAGSSSEQRVTALLSLRE
                     VFGDDLPDNPHFVQAIEQAWQQIVQFGAHQALLNTLKI"
     gene            8567..9553
                     /locus_tag="JN078_001178"
     CDS             8567..9553
                     /locus_tag="JN078_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HAY9040454.1"
                     /translation="MTRTNLITGFLGSGKTTSILHLLAHKDPNEKWTVLVNEFGEVGI
                     DGALLADSGALLKEIPGGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQIL
                     DLLTAPVYEPWIDLRATLCILDPRLLLDEKSASNENFRDQLAAADIIVANKSDRATPE
                     SEQALQRWWQQNGGDRQLIHSEHGKVDGHLLDLPRRNLAELPASAAHSHQHVVKKGLA
                     ALSLPEHQRWRRSLNSGQGYQACGWIFDADTVFDTIGILEWARLAPVERVKGVLRIPE
                     GLVRINRQGDDLHIETQNVAPPDSRIELISSSEADWNALQSALLKLRLATTA"
     gene            9592..10305
                     /gene="lpxT"
                     /locus_tag="JN078_001179"
     CDS             9592..10305
                     /gene="lpxT"
                     /locus_tag="JN078_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311093.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Kdo(2)-lipid A phosphotransferase"
                     /protein_id="HAY9040455.1"
                     /translation="MIKNLPQIVLLNIVGLALFLSWYIPVNHGLWLPIDADIFYFFNQ
                     KLVESKAFLWLVALTNNRAFDGCSLLAMGMLMLSFWLKENAPGRRRIVIIGLVMLLTA
                     VVLNQLGQALIPVKRASPTLTFTNINRVSELLSVPTKDASRDSFPGDHGMMLLIFSAF
                     MWRYFGKVAGLIALIIFVVFAFPRVMIGAHWFTDIIVGSMTVILIGLPWVLLTPLSDR
                     LITFFDKSLPGKNKHFQNK"
     gene            10717..11283
                     /gene="mepS"
                     /locus_tag="JN078_001180"
     CDS             10717..11283
                     /gene="mepS"
                     /locus_tag="JN078_001180"
                     /EC_number="3.4.17.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional murein DD-endopeptidase/murein
                     LD-carboxypeptidase"
                     /protein_id="HAY9040456.1"
                     /translation="MVKSQPILRYILRGIPAIAVAVLLSACSANNTAKNMHPETRAVG
                     SETSSLQASQDEFENLVRNVDVKSRIMDQYADWKGVRYRLGGSTKKGIDCSGFVQRTF
                     REQFGLELPRSTYEQQEMGKSVSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHAST
                     SSGVIISSMNEPYWKKRYNEARRVLSRS"
     gene            11464..13020
                     /locus_tag="JN078_001181"
     CDS             11464..13020
                     /locus_tag="JN078_001181"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic di-GMP phosphodiesterase"
                     /protein_id="HAY9040457.1"
                     /translation="MFIRAPNSGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYD
                     TLIIDVQKYLDTYFADLKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVKDK
                     KTFCSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSG
                     VFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIA
                     GIPLTVRLYADDWTWNDVWYAFLLGGMSGTVVGLLCYYLMSVRMRPGREIMTAIKREQ
                     FYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFEL
                     IARDAAELEKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVLEITERD
                     MLKEQEATQLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTET
                     ITSPVLDAVLTLAKRLNMLTVAEGGETPEQARWLSEPGVNFMQGYWISRPLPLDDFVR
                     WLKKPYTPQW"
     gene            13102..14916
                     /locus_tag="JN078_001182"
     CDS             13102..14916
                     /locus_tag="JN078_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311096.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HAY9040458.1"
                     /translation="MIVRILLLFIALFTFGAQAQAIKESYAFAVLGEPRYAFNFNHFD
                     YVNPAAPKGGQITLSALGTFDNFNRYALRGNPGARTEQLYDTLFTTSDDEPGSYYPLI
                     AESARYADDYSWVEVAINPRARFHDGSPITARDVEFTFQKFMTEGVPQFRLVYKGTTV
                     KAIAPLTVRIELAKPGKEDMLSLFSLPVFPEKYWKDHKLSDPLATPPLASGPYRVTSW
                     KMGQNIVYSRVKDYWAANLPVNRGRWNFDTIRYDYYLDDNVAFEAFKAGAFDLRMEND
                     AKNWATRYTGKNFDKKYIIKDEQKNESAQDTRWLAFNIQRPVFSDRRVREAITLAFDF
                     EWMNKALFYNAWSRTNSYFQNTEYAARNYPDAAELVLLAPMKKDLPPEVFTQIYQPPV
                     SKGDGYDRDNLLKADTLLNEAGWVLKGQQRVNATTGQQLSFELLLPASSNSQWVLPFQ
                     HSLQRLGINMDIRKVDNSQITNRMRSRDYDMMPRLWRAMPWPSSDLQISWSSEYINST
                     YNAPGVQSPVIDSLINQIIAAQGNKEKLLPLGRALDRVLTWNYYMLPMWYMAEDRLAW
                     WDKFSHPAVRPVYSLGIDTWWYDVNKAAKLPSARQQGE"
     gene            14917..16011
                     /locus_tag="JN078_001183"
     CDS             14917..16011
                     /locus_tag="JN078_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin C ABC transporter permease YejB"
                     /protein_id="HAY9040459.1"
                     /translation="MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEF
                     GNAGVLPGAGGEGVRASHAQTGVGNISDSNYRGGRGLDPEVIAEITHRYGFDKPIHER
                     YFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV
                     HNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWY
                     QKITDYLWHITLPVLATVIGGFAALTILTKNSFLDEVRKQYVVTARAKGVSEKNILWK
                     HVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTL
                     YIFTLIGLLLNIVSDISYTLVDPRIDFEGR"
     gene            16011..17036
                     /locus_tag="JN078_001184"
     CDS             16011..17036
                     /locus_tag="JN078_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAY9040460.1"
                     /translation="MSRLSPVNQARWARFRHNRRGYWSLWIFLVLFGLSLCSELIAND
                     KPLLVRYDGSWYFPLLKNYSESDFGGPLASQADYQDPWLKQRLENNGWVLWAPIRFGA
                     TSINFATDKPFPSPPSRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVL
                     AGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSL
                     VGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITTL
                     TSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLGITAFLSVAILLSLLIFIGEAVRDA
                     FDPNKAV"
     gene            17038..18627
                     /gene="yejF"
                     /locus_tag="JN078_001185"
     CDS             17038..18627
                     /gene="yejF"
                     /locus_tag="JN078_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin C ABC transporter ATP-binding protein
                     YejF"
                     /protein_id="HAY9040461.1"
                     /translation="MTQTLLAIEDLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGES
                     GSGKSVTALSILRLLPSPPVEYLSGDIRFRGESLLHASDQTLRGVRGNKIAMIFQEPM
                     VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG
                     ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLS
                     IVRKLAHRVAVMQNGRCVEQNYAATLFASPTHPYTQKLLNSEPSGDPVPLPEPASTLL
                     DVEQLQVAFPIRKGILKRIVDHNVVVKNISFTLRAGETLGLVGESGSGKSTTGLALLR
                     LINSQGSIIFDGQPLQNLNRRQLLPIRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH
                     QPTLSAAQREQQVIAVMHEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILD
                     EPTSSLDKTVQAQILTLLKSLQQKLQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG
                     PCARVFAAPQQEYTRQLLALS"
     gene            complement(18631..18975)
                     /locus_tag="JN078_001186"
     CDS             complement(18631..18975)
                     /locus_tag="JN078_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040462.1"
                     /translation="MTSLQLSIVHRLPQNFRWSAGFAGSKVEPIPQNGPCGDNSLVAL
                     KLLSPDGDNAWSVMYKLSQALSDIEVPCSVLECEGEPCLFVNRQDEFAATCRLKNFGV
                     AIAEPFSNYNPF"
     gene            complement(19308..20491)
                     /gene="bcr"
                     /locus_tag="JN078_001187"
                     /pseudo
     CDS             complement(19308..20491)
                     /gene="bcr"
                     /locus_tag="JN078_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311101.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter Bcr"
     gene            complement(20519..21214)
                     /gene="rsuA"
                     /locus_tag="JN078_001188"
     CDS             complement(20519..21214)
                     /gene="rsuA"
                     /locus_tag="JN078_001188"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase RsuA"
                     /protein_id="HAY9040463.1"
                     /translation="MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE
                     HDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLD
                     IDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDL
                     TKPAVLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGE
                     YRPLTEEEIASVV"
     gene            21363..23123
                     /locus_tag="JN078_001189"
     CDS             21363..23123
                     /locus_tag="JN078_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HAY9040464.1"
                     /translation="MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL
                     ARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR
                     NLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGW
                     IYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS
                     NGLFSEADLNRELKKQQRITPHIISQIMEFAEKRKGVMIFAATVEHAKEIVGLLPAED
                     AALITGDTPGAERDVLIEDFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY
                     QQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANT
                     FWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE
                     CDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSERF
                     RLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYWQ
                     VREKVFDYEGRFRRAHELRG"
     gene            23248..23532
                     /gene="rplY"
                     /locus_tag="JN078_001190"
     CDS             23248..23532
                     /gene="rplY"
                     /locus_tag="JN078_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000494192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HAY9040465.1"
                     /translation="MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDH
                     DKVMNMQAKAEFYSEVLAIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA"
     gene            complement(23671..24678)
                     /gene="yejK"
                     /locus_tag="JN078_001191"
     CDS             complement(23671..24678)
                     /gene="yejK"
                     /locus_tag="JN078_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein YejK"
                     /protein_id="HAY9040466.1"
                     /translation="MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTETVVEMVAELH
                     RVYSAKNKAYGLFSEESELAQTLRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGF
                     VLFCHYRYLAVEYLLVAVLSNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETN
                     PESTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAE
                     RQNVRQQVYSYCNEQLQAGEEIELESLSKELAGVSEVSFTKFAAEKGYELEECFPADR
                     STLRQLTKFAGSGGGLTINFDAMLLGERIFWDPATDTLTIKGTPPNLRDQLQRRTSGG
                     N"
     gene            24860..25087
                     /locus_tag="JN078_001192"
     CDS             24860..25087
                     /locus_tag="JN078_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YejL family protein"
                     /protein_id="HAY9040467.1"
                     /translation="MPQISRYSDEQVEQLLAELLNVLEKHKAPTDLSLMVLGNMVTNL
                     INTSIAPAQRQAIANSFARALQSSINEDKAH"
     gene            25107..26867
                     /gene="pbgA"
                     /locus_tag="JN078_001193"
     CDS             25107..26867
                     /gene="pbgA"
                     /locus_tag="JN078_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin transport protein PbgA"
                     /protein_id="HAY9040468.1"
                     /translation="MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWP
                     TTLAGRIYSYVSIIGHFSFLVFATYLLILFPLTFIVGSQRLMRFLSVILATAGMTLLL
                     IDSEVFTRFHLHLNPIVWQLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKL
                     RSLTRRRRFARPLAAFLFIAFIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFL
                     EKHGLLDAQEYQRRLIEQGNPDAVSVQYPLSELRYRDMGTGQNVLLITVDGLNYSRFE
                     KQMPALAGFAEQNISFTRHMSSGNTTDNGIFGLFYGISPSYMDGILSTRTPAALITAL
                     NQQGYQLGLFSSDGFTSPLYRQALLSDFSMPSVRPQSDEQTATQWINWLGRYAQEDNR
                     WFSWVSFNGTNIDDSNQQAFARKYSRAAGNVDDQINRVLNALLDSGKLDNTVVIITAG
                     RGIPLSEDEETFDWSHGHLQVPLVIHWPGTPAQRINALTDHTDLMTTLMQRLLHVSTP
                     ASEYSQGQDLFNPQRRHYWVTAADNDTLAITTPKKTLVLNNNGKYRTYNLRGERVKDE
                     KPQLSLLLQVLTDEKRFIAN"
     gene            26942..27018
                     /locus_tag="JN078_001194"
     tRNA            26942..27018
                     /locus_tag="JN078_001194"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:26976..26978,aa:Pro,seq:ggg)
     gene            27237..28478
                     /locus_tag="JN078_001195"
     CDS             27237..28478
                     /locus_tag="JN078_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000101912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HAY9040469.1"
                     /translation="MARKTPPLTTVQIKAARPAEKEYTLQDGGGLFLLVKPSGSKLWR
                     FSYYRPSDKKRILLSFGSLDDVSLADARKRRSEYRALISAGTDPQGHEKKKREAEARR
                     QGNTFENVAAAWYQVKISQNLAPNTIKDIWRSLDKYVFPFIGNTPIDTLTARRFVEVL
                     TPIKERGNLETLKRVLQRVNEVMDYAANSGLIDANPAMNVRKAFPSPVKKHMPTIRPE
                     QLPELMQALSVSATERQTRLLIEWQLLTVTRPAEASSTRWDEINLDAKQWTIPAGRMK
                     MRRDHVIPLSGQAMAVLEAMKPISHHRNYVFPSLKDPQQPMNSQTANAALRRMGFAGV
                     LVSHGLRAIFSTAANEEGFEPDVIEAALAHVDTNEVRRAYNRSNYIEKRIVLMRWWGE
                     FVEAAATGVTLASGKRGIRAV"
     gene            28974..29180
                     /locus_tag="JN078_001196"
     CDS             28974..29180
                     /locus_tag="JN078_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000387479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family phage regulatory protein"
                     /protein_id="HAY9040470.1"
                     /translation="MEAIRKIIFRQEVKKIIHIKADSTLQSMINAGEFPQGFRVGLRR
                     RGWYEDDVLAWQKEREQEARGTAA"
     gene            29195..29860
                     /locus_tag="JN078_001197"
     CDS             29195..29860
                     /locus_tag="JN078_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001329530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040471.1"
                     /translation="MTNTKKAAPIWSRLSEQLTRCALCVYDPKHKHGDDSRYQAGGQC
                     NQSGSVRCHTCNERFSLYSLRNCSRAKAHGANLSDSCSIFLRRLFRAGDNVLVNSLSV
                     IVLSCIAMRRNTSHHGADSFYPLGSMPRRFSSVRPNSLSQLARLMPSLCASLSNCSFS
                     SGEIRILNCGDCPSPLGLLSRLIINKWSPIELAFPLLGGHLNTRALKKAKPRKCHYHS
                     QGF"
     gene            29886..30086
                     /locus_tag="JN078_001198"
     CDS             29886..30086
                     /locus_tag="JN078_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000226783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host cell division inhibitor Icd-like protein"
                     /protein_id="HAY9040472.1"
                     /translation="MVAVNHIPHLVHTQTAFVWRFLALSAGESQIIHVTAWTEREARS
                     RCPSGCVAVFAARIRQGETYAQ"
     gene            30076..30297
                     /locus_tag="JN078_001199"
     CDS             30076..30297
                     /locus_tag="JN078_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001372127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040473.1"
                     /translation="MHNKTTPNAAAAALTTLMHALIDIECTAELAQGEEQKDRTQFAL
                     ECIRYIATRSLNDAKNILVADCENGGGYA"
     gene            30290..30523
                     /locus_tag="JN078_001200"
     CDS             30290..30523
                     /locus_tag="JN078_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001373432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040474.1"
                     /translation="MRDDRFNSLKQEFPGVPDDAADALSSMPELIRAAFFLLSTREYK
                     STGLDVLNIAADYAEYVAEARYRRKFPEDVSHA"
     gene            30516..30749
                     /locus_tag="JN078_001201"
     CDS             30516..30749
                     /locus_tag="JN078_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040475.1"
                     /translation="MRDIYHETIDRAFLALSHSENMLEILRIWLETLGDNERDKQKSR
                     IATALITLLEPVIMELQEIDLLHDRYKEQHTGE"
     gene            30755..31054
                     /locus_tag="JN078_001202"
     CDS             30755..31054
                     /locus_tag="JN078_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4222 domain-containing protein"
                     /protein_id="HAY9040476.1"
                     /translation="MKLKYSGLTASGNTHPKFTRGDIYRDQYGGTVMIKGVEERRVTY
                     RREGYEYDCVMPVYQFRRDFSLVQTAPHNVPTSNARARANIQKLKTMINGFRGKK"
     gene            31051..>31139
                     /locus_tag="JN078_001203"
     CDS             31051..>31139
                     /locus_tag="JN078_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707046.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HAY9040477.1"
                     /translation="MKSAPNLKKQPYDKMTEVIIFAGSDAWAHA"
BASE COUNT         7676 a         8033 c         7726 g         7704 t
ORIGIN      
        1 agcctataat tacgacataa tccttttcgc gcatagcaca tcctctggta aaaaattacc
       61 aaccctgtca atccacaaga atatagatac tgcaaagacg gtttaaacat gtgttcatat
      121 ttaaacatgt gctcatagca tgcatgtttt acgtaaagta aattaccgcc agagaggcaa
      181 aatgggcaga tttgagcagg ctcacaaaat gcgattaaat gcctgaatta caaaagcgag
      241 gaatttgtga cgggatgcac agaacgggaa caataaaaaa ggcagaaaat aatctgccct
      301 tgaggaaata accttagtgt ttgatgaacg tttcaagttt ctactgaaag ataaaaccat
      361 ttaaattcat aaaattacat tcacaaaccg gtcattctct ttgcgctcat caaatgttac
      421 agggcaggaa atttctgccc tgtaacacac cttttattac gctgctttcg ctactgcgtc
      481 cacttccgga cgtttcagga aggcataggc caaacccgcc accagcgtac cggcaataat
      541 tgctaccagg taacccagta ccggcgtaat agcgccaggg atcagcagaa caaacagacc
      601 accgtgcggt gccatcagtt tcgcaccaat cgccattgag attgcgccag tcagcgcccc
      661 acccacgata cagcacggca gcacacgcat cggatcacga gcagcaaacg gaattgcacc
      721 ttccgaaatg aagcacagtc ccaataccag agcggctttg ccaccttcct gctgcgcttt
      781 gtcgaatttg cgacgcgcca ccattgttgc cagacccatt gccagcggtg gcaccatacc
      841 tgccgccata atcgccgcca tcgggccata ggtttgagta ctcagcagac ccacaccgaa
      901 tgcgtacgct gctttgttta ccggaccgcc catgtcagta cacatcatgc caccgaggat
      961 cgcccccagc agaaccgcat tcgcagtccc catggtctgc agccagtgag tcagcccttc
     1021 gagaatgcca gcaactggtt taccgatcag gtagatcatc gccagaccga ccaccagact
     1081 ggaaattagc ggaatgatca ggatcggttt cagcgcctcc atactctgtg gcagtttcag
     1141 ttgcgtactg attaacttcg caatgtaacc agccaggaag ccagcaatta taccgccaat
     1201 aaagccagaa ccggtgctga ccgccagcat accgccaatc agacccggcg tgaggcccgg
     1261 acgatcggca atggagaagg caatataacc tgccagtacc ggcaccatca gcgcaaaggc
     1321 tgaaccaccg ccaatctgca tcagcgccgc tgccaacgta cccggctctt taaacgcttc
     1381 gataccaaaa gcaaaagaaa gcgcgataca cagaccacct gcgacgacca tcggcagcat
     1441 ataagagacg cctgtcagca agtgacggta agcgcctgca ctctctttct taccttcagt
     1501 ggtcgccgtt tgagctttgc ccgccggttc atacggcgtt gcttcagcaa ccgctttatc
     1561 cagttcctgc gcggttttct tcagcgccag accggtagag gtacgataca tcggtttacc
     1621 agcaaatttc gccagatcca cttcgatatc tgccgccaca atcaccagat ccgctgctgc
     1681 gacttcttca ggggtgattg cattgcccgc gccaacagaa ccacgggttt caactttcac
     1741 ccaccagcca cgttttttcg cttcggtttc aatggcttca gccgccataa aggtgtgtgc
     1801 tacgccagtc gggcaagcag tcaccgcaac tacgcgtttc ggaccgctgg cagcaaccgg
     1861 tgctgtcgca gcgaccggcg cagtgtaagg tttcgcatgg cctttggctt cactcaggaa
     1921 cagctcaggg tgcgcaactg cccgggaaat atcacccagc cagacatttt taccgttcag
     1981 cgcgctgtca ttcgggatgg aatcaccgag aacaatcgcc atttctgcgt cgttcggatt
     2041 gtcgatgatt tccagttttg cttttcgcgc caccgcgccc agcagggtct tcgccatata
     2101 ggcgcgtgcc tgaccgagat tagcgtcaat aatcagcagc gttttcatta tgcctctcct
     2161 gctgtcagtt aaaaggttgt aagtcgacgc gcgccatcat tgcggccaac tgcggacgat
     2221 cggtaatacc cacattgctt tgacttaccg ccagggctgc aacagctgtc gccagacgca
     2281 gtgtgtgttc actggattca cgcatcagca agccataaat caggccacca accatagaat
     2341 cccctgcgcc aacggtgctt acgacatcga ctgacggtgg tttggcgatc cattcgccgg
     2401 aggcattaac ccaaagcgcg ccttcggcac ccagtgaaat aacaacatgc gcaatacctt
     2461 gttcacgtag cgcatgtgca gcttcaatca catctttcat ttcaggcagt ttacggcctg
     2521 cccaaatttc caactcgcgg cggttaggtt tcaccagcca cggtgccgct ttcaaacctg
     2581 ctactaacgc ttcacggcta ctatcaaaga taatgcaagg acactgacta cgcaggcgag
     2641 tcatccagtc ggtgaacgct tccgggctga cgcctgacgg taagcttccg ctgacacaga
     2701 ccatatcgaa ctgaccgagc cagctcagag aatcagtcac aaagcgttcc cagtcggcgg
     2761 gggtgacttc aaaacccgag aagttgaagt cggtcacttc gccgtctttt tccgtcagct
     2821 taacgttaat tcgggtgcgc ccctgtacaa cctggaaacg gttggcaatg cccagctcgc
     2881 tgaacagttg ctgaaaacca tcctgattgt ctttacccag gaagccgcca acggtgacat
     2941 caattcccag gtcttttaat actttggcca cgttgatgcc tttacccgcc gcatgcagac
     3001 cggtggtttt caccaggttc acttcgccgc gttcaatttc cgggcagaaa ccaacaaggt
     3061 cataagccgg attaagggtg atcgtagcaa cacgtctgct cattatgcgc cctccccaag
     3121 accagcagcg atagcgtcgc caatggcttt cagcgcctgt tcagcatctg caccctgggc
     3181 ggtaaagcgt aggcgatgac ctttcttaac gccaagtgcc acaactttca tcagactacg
     3241 tccgtttgcc ggtttgccgg tgccatcaag gtttgtcacg gtaatatcac tgttaaattg
     3301 tttaatggta ttgaccagca tggtacctgg acgagcatgc aggccgtgtt cattgcgcac
     3361 cacaaactcc gcgcttaaca cgtcgtcggt cggcgcatca tcgctggtca gcagcgccag
     3421 caacgttgcc gcatctgctt tcagcaagcg gtcagcttta ttgtcgagca ataaatcagc
     3481 gagacgctta agaaccgcga tgggctgatc gtcattcatc gccacactca ccagcatggc
     3541 tgccgtttcg ccgtccacag caaaagcatt tgccgcacgg cttaccgcaa tcgcgctacg
     3601 cagattgcct tcggcgctat cgctcagcca gataccctgt ccgagattca gcggttgttc
     3661 attgatggct ttggtgacga aagtggcgtc aactgccccc gcctctttca gacgcgcagc
     3721 gttcagcgcc tgaagagtca gcagatcgct ggcgacgata tccagcgtca gcatttcgtt
     3781 gtcgagcttc agctgctcac tctgcttttc gcccatcagt aatgcgcgaa gttcttctgc
     3841 tgttgttgct gacttcagtt gttcagcaac ggaatcatcg ctcagtacgt gggtcagctg
     3901 gcgtagcagg cccagatgtt catccgagct ggcagcaata ccgattgcca cgtacgctac
     3961 ctgaccgtca ccccaggtga cgccttccgg gaactgaaat acctgaacgc cggttttcag
     4021 cacctgatcg cgggtgtcgg tagtgccgtg tggaatagca ataccattgc cgaggaacgt
     4081 tgaggtttgc tgttcgcgcg ccagcatgcc attgacgtag ccttctgcta cattaccggc
     4141 ctgcaccagc gccgcagcga cctggcgaat cgcctcttct ttgtctccgg ccttttcgcc
     4201 cggatggatg tcctgtacgg ataactggaa catagttctc ctctcttgct gaattgaaac
     4261 gattcagcct ctatgagaaa aaaagcgcca acctggctta gggttaaaga caagatcgcg
     4321 ctgaaacgtt tcaagaaagc ataatacttc tgtttcagca cgcaaggaaa gccgtaaagt
     4381 tatgagcaaa agtttgatgt gctgcacatt tttttgtcat ttttcctaat tgctgatggg
     4441 aaaatccgtt atcagcaatt tcatttcagc agcgtcagca gccaatcagc aacagtgaaa
     4501 tggcattttg attattcgtg gcgcttttga tttcgctgtc tgtttatttt ctgacaagca
     4561 gcgtaaactc cgcgtcttcc tcttccagtg atagacctgc atgcataact cccccgcagt
     4621 ctccagcgcg aaatcgtttg acctgacctc gacggcgttt ttaatcgttg cctttctcac
     4681 cggtattgcg ggtgctctgc aaaccccgac actcagtatt ttccttaccg atgaagtaca
     4741 tgcccgtccg gcgatggtgg gattcttctt taccggcagc gctgtcattg ggattctggt
     4801 aagtcagttt ctcgctgggc gctctgataa gcgcggcgat cgcaaatcgc tgattgtctt
     4861 ttgctgcctg ttaggcgtgc tggcctgcac cctttttgcc tggaatcgca actactttgt
     4921 tttgctattc gttggcgtct ttcttagcag ctttggctcg accgctaacc cgcaaatgtt
     4981 tgcccttacc cgtgaacatg ccgacaaaac cggacgtgag gcggtgatgt tcagctcttt
     5041 tttacgcgct caggtttcac tggcatgggt cattggccca ccgctggctt atgcgttagc
     5101 gatgggtttc agctttacgg taatgtatct gagcgcagcg gtagcgttta ttgtttgcgg
     5161 cgtgatggtg tggctgtttt taccgtcgat gcaaaaagag cttccgctgg cgaccggcac
     5221 ggttgaagcg ccgcgccgta accgtcgcga tacgctactg ctgtttgtca tttgtacatt
     5281 gatgtggggc tcgaacagcc tgtacatcat caacatgccg ctatttatta tcaacgaact
     5341 gcatcttccc gagaaactgg ccggtgtgat gatggggacc gccgccgggc tggaaatccc
     5401 gacgatgttg attgccggat atttcgccaa acgtctgggt aagcgtttct taatgcgcgt
     5461 tgctgccgtg ggtggcgtct gtttttacgc aggaatgctg atggcgcatt cacctgccat
     5521 tctgttgggc ttgcagctgc taaatgctat ttttattggc attctgggcg gcatcgggat
     5581 gctctatttt caggatttga tgcccggtca ggcaggttca gccaccacgc tctataccaa
     5641 cacgtcgcgc gtgggctgga tcatcgcagg atcagtggcg ggcatcgtcg ccgagatctg
     5701 gaattatcac gctgtgttct ggtttgcgat ggtgatgatt atcgccactc tgttttgctt
     5761 actgcggact aaagatgttt aagacgcggt cagcatttcc agatcgataa gccaggtcat
     5821 ggcctgctga cgcgagttac cgcacatttc agcgctggct tgtaagcctg cacagacttt
     5881 cggtcgcagt ggcgaggtga aaattttaca gcgttgctgt tcatcaagct gaatgcaggg
     5941 cgtattggcg ggcttgccat ctggcatacc gggaataggg ctgaaaattg aaggggcagt
     6001 gcaacacgcc ccgcaacccg gacggcattc catacgttgt tctcttaagg ttaaccaccg
     6061 gattgatgag cgcgcacagt accacctttt ttgcaccagc aaaagtgcga ataccacttg
     6121 cccgaaaggc ccgtcgcgag tactttgtcg cgatattttt gacattttcg actacaggaa
     6181 tttttcgatg ccaagagcga acgaaattaa aaaaggtatg gtactgaatt acaacggcaa
     6241 actgctgctg gttaaggata ttgatattca gtcgcccact gcccgcggtg ccgctacgct
     6301 gtacaaaatg cgtttttctg atgtccgtac cgggctgaaa gtagaagagc gtttcaaagg
     6361 tgatgatatc gttgacaccg tgacgctgac ccgccgttac gttgacttct cctatgtcga
     6421 tggcaacgaa tatgtcttta tggataaaga agactatacc ccgtatacct tcaccaaaga
     6481 tcagattgaa gaagagttgc tgtttatgcc agagggcggc atgccggaca tgcaggtgct
     6541 gacctgggac ggtcaactgc tggcgcttga gctgccgcag accgttgatc tggaaatcgt
     6601 tgaaaccgca ccaggcatca aaggggcatc tgccagcgcc cgtaacaaac cggcgacatt
     6661 gagcactggt ctggtgattc aggtaccaga atacttaagc ccgggcgaaa aaattcgtat
     6721 ccatatcgaa gaacgccgtt atatggggcg tgctgactaa cttcagccgc atgcagaaaa
     6781 gggatagctc aggctgcccc ttttttaatt tattatacca atcttctatt ttgcgcttcc
     6841 tgaacacctt acgccctcaa ttttcactcg ttgattgatc gccctcacac ttcatcgcat
     6901 taacaatcca gaccaatttc aattgctgtc atataacttt acactgtcat tgttaattta
     6961 tcgttactaa gacgtgactc ctatgaagac aattgcctcc gttacgctcc cgcatcatgt
     7021 acacgctcca cgctacgatc gccagcagtt gcaatcacgt atcgttcatt ttggctttgg
     7081 cgcctttcac cgcgctcatc aggcgttact gaccgatcgt gtgctgaatg cccagggcgg
     7141 cgactggggg atctgtgaaa tcagcttgtt cagcggtgat caactgatga gccagctccg
     7201 cgcacagaac catttatata ccgtgctgga gaaaggtgcg gacggcaatc aggtgataat
     7261 tgtcggtgcc gttcacgaat gccttaatgc aaaactggat tccttagcgg caattattga
     7321 gaaattttgc gagccacagg tggcaattgt ttccctgacg attaccgaaa aaggctattg
     7381 tattgacccg gccaccggtg cactcgacac cagtaatccg cggattattc acgatctaca
     7441 aacccctgaa gaacctcact ccgcaccggg tattctcgtc gaagcactga aacgccgccg
     7501 tgagcgcggc cttacaccgt ttaccgtgct ctcctgcgac aatattcccg acaatggcca
     7561 tgtggtgaaa aacgcggtgc tgggaatggc agaaaaacgt tcgccagaac tcgccgggtg
     7621 gataaaagaa cacgtcagtt ttccgggaac catggtcgac cgcattgttc cggctgcaac
     7681 cgacgaatca ctggcagaaa tcagccagca tctgggggta aatgatccct gcgcgattag
     7741 ctgcgaaccg tttatccagt gggtggtgga agataacttc gtcgctgggc gtcctgcctg
     7801 ggaagtcgca ggtgtacaaa tggtgaatga tgtcctgcca tgggaagaga tgaaactgcg
     7861 tatgcttaat ggcagccact cttttctcgc ttatctgggt tacctttcag gattcgccca
     7921 tatcagtgat tgcatgcagg atcgcgcatt tcgccatgcc gccagaacat taatgctgaa
     7981 tgagcaagcg ccgacactac aaattaaaga tgtcgattta acacaatatg cggacaagtt
     8041 aattgctcgt tttgctaatc cggcgctgaa acataagacc tggcaaatcg caatgaatgg
     8101 tagccagaaa ttaccgcaac gtatgctggc aggtattcgc atacatctgg ggcgcgaaac
     8161 ggactggtcg ttgctggcat taggcgttgc tggctggatg cgttacgtca gcggcgttga
     8221 tgatgccgga aatgccattg atgttcgcga tccgcttagc gataaaattc gcgaacttgt
     8281 tgcgggcagc agcagtgaac aacgcgtaac cgccctgctt tccctgcgtg aagttttcgg
     8341 tgatgatctg ccagataacc cgcattttgt gcaggccatc gaacaagcct ggcaacaaat
     8401 cgtacaattc ggcgcacatc aggcgctatt aaacaccctc aaaatttaac gatttctgcg
     8461 gttaaagcgg atgaagctca ccttcgtccg ctctcccctt ctcttttctg ccttttttag
     8521 ccaggattaa cgctcagtta acttaccaga gtattgcgga gccgttgtga ccaggaccaa
     8581 cctcatcacc ggttttctcg gcagcgggaa aaccacgtcg attcttcatc tgttagccca
     8641 taaagatccc aacgaaaaat ggacggtact ggttaatgaa tttggggaag tcggaattga
     8701 tggtgctttg ctcgccgata gcggcgcatt gctgaaagag atccccggcg gctgcatgtg
     8761 ctgcgttaat ggtttaccca tgcaggtagg gttgaatacc ttactgcgtc agggaaaacc
     8821 agaccgcttg ttgatagagc cgaccgggct gggccatccg aaacagatcc tcgatctgtt
     8881 aaccgcacca gtctatgaac cgtggataga tctgcgcgcc accttgtgca ttctcgatcc
     8941 acgcttgctg ctggacgaaa aaagcgccag caatgaaaac ttccgtgacc agctggctgc
     9001 cgcagacatc attgtcgcca ataaatccga ccgtgcgacg cccgaaagtg agcaagcgct
     9061 acagcgttgg tggcagcaaa atggtggcga tcgacaatta attcacagtg agcatgggaa
     9121 agttgacggt catcttctgg atttgccgcg tcgcaattta gccgagttgc ccgccagcgc
     9181 cgcgcattct catcagcatg tcgtgaaaaa agggttagca gcgttaagcc tgccagagca
     9241 tcaacgctgg cgtcgcagtc tgaacagcgg gcaaggatat caggcctgcg gctggatatt
     9301 cgacgctgat acggtattcg acaccattgg cattctggaa tgggcgcgac ttgcaccggt
     9361 ggaacgcgtc aaaggcgtgc tgcgtattcc cgaagggctg gtacgaatca accgtcaggg
     9421 cgatgacctg cacattgaaa cgcaaaacgt tgcgccaccg gacagccgta ttgagctgat
     9481 ttccagcagc gaagctgact ggaatgcctt gcagagcgcg ctgttgaagc ttcgtttagc
     9541 gactaccgcg taaggttgcc tgcgtttttc agtaagataa ttagagaaaa tatgattaaa
     9601 aatttgccgc aaatagtgtt gttgaatatt gtcggcctcg cgctgtttct ttcctggtat
     9661 attcccgtta atcatggatt atggttgccg attgatgcgg atatttttta tttctttaat
     9721 cagaaactgg tcgaaagtaa ggccttttta tggctggttg cattgaccaa caatcgcgct
     9781 ttcgacggtt gttctctgct ggcgatggga atgttgatgc tgagtttctg gctgaaagaa
     9841 aacgccccag gcagacgacg tatcgtgatt attggtctgg taatgctatt aactgcagtg
     9901 gtattaaacc agctgggtca ggcattaatt cctgtaaaac gggccagccc aacattgacg
     9961 tttactaata ttaaccgcgt cagcgaactg ctctctgtcc ccacgaaaga tgcctcacga
    10021 gatagctttc ccggcgatca cggcatgatg ctgcttattt tttcggcatt catgtggcgt
    10081 tatttcggta aagttgcagg tcttatcgcc cttattattt ttgtggtttt tgcgtttccc
    10141 agagtaatga ttggcgcaca ctggtttact gacatcattg tcggttcgat gaccgtgata
    10201 ttgatcggtt tgccctgggt gttgctgacg ccattaagtg atcgattaat cacctttttt
    10261 gacaaatcac taccgggaaa aaacaaacat ttccaaaaca aataactcac agtaattaac
    10321 atcatcaggt ttatttttat agtgaggata atcctgatga tgcgcaccgt gctttcatct
    10381 atcgaacgca aaaatcattc tctaagtaaa tgaatggatt gcatgcgttt cactcaatcg
    10441 tactttaatt gaccaatccc gcttattaac tttctgtatc actttttctt ataaaaaatc
    10501 atgtaaaacc gctcgccaag accgcaccaa tcgggtaatc tcgaactcgt tttgcctcgg
    10561 cggtagatta tcctcacagc atataatttt gtgcgttagt ccacagattt ggccttaagg
    10621 aattgtttca acatgcccag gtaattagtc tcgtgtcgct tggcattttt ttataacgat
    10681 atttgtcgtt aaggacttca agggaaaaca aacaacatgg tcaaatctca accgattttg
    10741 agatatatct tgcgcgggat tcccgcgatt gcagtagcgg ttctgctttc tgcatgtagt
    10801 gcaaataaca ccgcaaagaa tatgcatcct gagacacgtg cagtgggtag tgaaacatca
    10861 tcactgcaag cttctcagga tgaatttgaa aacctggttc gtaatgtcga cgtaaaatcg
    10921 cgaattatgg atcagtatgc tgactggaaa ggcgtacgtt atcgtctggg cggcagcact
    10981 aaaaaaggta tcgattgttc tggtttcgta cagcgtacat tccgtgagca atttggctta
    11041 gaacttccgc gttcgactta cgaacagcag gaaatgggta aatctgtttc ccgcagtaat
    11101 ttgcgtacgg gtgatttagt tctgttccgt gccggttcaa cgggacgcca tgtcggtatt
    11161 tatatcggca acaatcagtt tgtccatgct tccaccagca gtggtgttat tatttccagc
    11221 atgaatgaac cgtactggaa gaagcgttac aacgaagcac gccgagttct cagccgcagc
    11281 taataaaccg tttggatgca atcccttggc tatcctgacg agttaactga aagcactgct
    11341 taggtagtgc ttttttgttt tcattcatca gagaaaatga tgtttccgcg tcttgatcca
    11401 ggctatagtc cggtcattgt tatcttttaa atgttgtcgt aatttcagga aattaacgga
    11461 atcatgttca tacgcgctcc caattctgga cgtaagctcc tgcttacctg cattgtagca
    11521 ggcgtgatga ttgcgatact ggttagctgc cttcagtttt tagtggcctg gcataagcac
    11581 gaagtcaaat acgacacact gattatcgac gtacaaaagt atctcgatac ctattttgcc
    11641 gacctgaaat ccactactga ccggcttcag ccgctgacct tagatacctg ccagcaggct
    11701 aaccccgaac tgaccgctcg cgcggcgttt agcatgaatg tccgtacgtt tgtgctggtg
    11761 aaagataaaa aaacattctg ttcatctgcg actggtgaga tggacattcc actcaatgaa
    11821 ttgattccgg cgctcgacat taataaaaac gtcgatatgg cgatcttacc cggcacgccg
    11881 atggtgccga acaaacccgc aatcgtcatc tggtatcgca accctttgct gaaaaatagc
    11941 ggtgtgtttg ccgctctgaa tctcaacctg acgccttctc tcttttatag ttcacggcag
    12001 gaagattacg atggcgtcgc cctcattatt ggcaatactg cgctatctac cttttcttca
    12061 cgtttgatga acgttaatga attaaccgac atgcctgtcc gtgaaactaa aattgcgggc
    12121 attcctctga ccgttcggct ttatgcggat gactggacat ggaacgatgt gtggtacgca
    12181 tttttactgg gcggcatgag tggaactgtc gttggcctgc tctgctatta cctgatgagc
    12241 gtacgtatgc gccccggcag agaaatcatg accgccatca agcgcgaaca attttacgtg
    12301 gcgtatcaac cggtggtgga tacacaagct ttgcgagtaa cgggcctgga agtactgcta
    12361 cgctggcggc atcctgtcgc gggagaaatt cccccggatg ccttcattaa ctttgccgaa
    12421 tcgcaaaaga tgattgtgcc gctgactcag cacctgtttg agttaattgc ccgcgatgcc
    12481 gcagaattag aaaaagtgct gccagtaggc gtcaaatttg gtattaacat tgcgccggac
    12541 catctgcaca gcgaaagctt taaagcagat atccagaaac tgctcacttc cctgcccgca
    12601 caccatttcc agattgtgct ggaaattacc gagcgcgata tgctgaaaga gcaagaagcc
    12661 acacaactct tcgcctggct gcactcggtc ggcgtagaaa ttgctattga tgacttcggc
    12721 accgggcaca gcgcgcttat ctatcttgag cgttttacgc tcgattatct gaaaattgac
    12781 cgtggattta tcaacgccat cggtacggaa acgatcactt cacccgtact tgacgcggtg
    12841 ctgacgctgg cgaaacgcct caatatgctg acggttgctg aagggggcga aacgccggaa
    12901 caggcgcgat ggctaagcga acccggcgtt aatttcatgc aaggctactg gattagtcgc
    12961 ccgttaccgc tggacgattt tgttcgctgg ctgaagaaac cgtatacgcc gcagtggtaa
    13021 ggtgtgctta cgtcccttat tattcatagt gaaagcatgc cggattgcgg ctaatgatga
    13081 gtaaaaggaa atccgttgca gatgattgtg cgcatactgc tgctgtttat cgccctgttc
    13141 accttcggtg cgcaggcgca ggctatcaag gaaagctatg cctttgccgt gctgggcgaa
    13201 ccccggtacg catttaattt caaccatttt gattatgtga accccgccgc gccaaaaggt
    13261 gggcagataa cgttgtcagc cctcggtacc ttcgataatt tcaaccgcta tgcactgcgc
    13321 ggcaacccgg gcgcacgcac cgagcagttg tacgacacgc tatttacgac ttccgatgac
    13381 gaaccaggca gttattaccc gctgattgct gaaagtgcac gctatgctga cgattattcc
    13441 tgggtggagg tcgctattaa tccgcgcgcc cgttttcatg atggttcgcc cattactgcc
    13501 cgcgatgtag agtttacttt tcaaaaattt atgaccgaag gcgtgccgca atttcgtctg
    13561 gtctacaaag gcaccaccgt caaagccatt gcaccgttaa ccgtgcgcat tgagttagct
    13621 aaacccggca aagaagatat gctgagtctg ttttcgctgc cggtatttcc agaaaagtac
    13681 tggaaggatc acaaacttag cgacccgctc gccacgcctc cgcttgccag tggtccgtac
    13741 cgcgttacgt cctggaaaat ggggcaaaat attgtctatt cccgtgtgaa agattactgg
    13801 gcagcaaact taccggtaaa ccgtggacgc tggaatttcg acaccattcg ctacgattat
    13861 tacctcgatg ataatgtcgc ctttgaagcg tttaaagcag gtgcctttga tttgcgtatg
    13921 gaaaacgacg ctaaaaactg ggccacgcgt tataccggta aaaatttcga taaaaaatac
    13981 atcatcaaag atgagcaaaa gaacgaatca gcccaggata cgcgctggct ggcgtttaat
    14041 atccaacgtc cggtattcag cgatcgccgg gtccgggaag caatcactct cgcctttgac
    14101 tttgaatgga tgaacaaggc gttgttttac aacgcctgga gtcgcacgaa cagttatttt
    14161 cagaataccg aatacgcggc cagaaattac cccgacgccg cggagctggt gcttctggca
    14221 ccaatgaaaa aagatctacc gccagaagtc ttcacacaaa tctaccagcc gccggtatct
    14281 aaaggcgatg gctacgatcg tgacaacctg ttaaaagccg acacacttct caacgaagcg
    14341 ggctgggtgc tgaagggtca gcaacgcgtt aatgccacaa cgggtcagca actcagcttt
    14401 gaattattgc ttcccgcaag cagcaatagt cagtgggtat tgccgttcca gcacagcctg
    14461 caacggctgg gtatcaacat ggacattcgc aaggtggata actcgcaaat caccaaccgc
    14521 atgcgcagtc gcgactatga catgatgccg cgcctatggc gggcgatgcc gtggcccagt
    14581 tccgatttac agatttcctg gtcatcggaa tatatcaatt ccacttataa tgcccccggc
    14641 gtgcaaagcc cggttatcga ctcactgatc aaccaaatta ttgccgcgca gggaaataaa
    14701 gaaaaattat tgccgttggg gcgagcactg gatcgcgtat taacgtggaa ttattacatg
    14761 ctgccaatgt ggtacatggc ggaagaccgt ctcgcctggt gggataaatt ctcccacccc
    14821 gctgtacgcc ctgtttacag cctgggtatc gatacctggt ggtatgacgt taataaagcg
    14881 gccaaactgc cgtcagccag gcaacaggga gagtagatgg gcgcttacct gattcgccgt
    14941 ctgttgctgg tgatcccaac attatgggcg attatcacca tcaacttttt catcgtgcaa
    15001 attgcgcctg gcggtccggt cgaccaggcc atcgccgcca ttgagtttgg taatgccgga
    15061 gtattacccg gcgcaggcgg tgaaggtgtt cgtgccagcc atgcgcaaac gggtgtcggc
    15121 aatatcagcg acagtaatta ccgtggcgga cgcggattag atccagaagt gatcgctgag
    15181 atcactcatc gctacggttt tgataagccg atccacgaac gttacttcaa aatgctctgg
    15241 gactacatcc gctttgattt tggtgatagc ctgtttcgca gcgcctcggt gctgacgctg
    15301 attaaagaca gtctgccggt ttccatcacc ctcggattgt ggagcacgct gattatctat
    15361 ctggtgtcga ttccgttagg cattcgcaaa gctgttcata atgggagccg ctttgacgtc
    15421 tggagtagcg catttatcat tatcggctac gccattccgg cctttttgtt tgccatcctg
    15481 ctgattgtct tcttcgcggg cggcagctat ttcgacctgt tccctctacg cggcctggtt
    15541 tccgctaact ttgattcgct gccgtggtat cagaaaatca ccgattatct gtggcatatc
    15601 acgctgccgg tgctggcgac ggtgattggt ggctttgcgg cgctgaccat actgacaaaa
    15661 aactcattcc ttgatgaagt gcgcaagcaa tacgtggtga ccgcgcgtgc gaaaggggta
    15721 agtgaaaaaa atattctctg gaaacatgtg ttccgcaacg ccatgctgct ggtgattgcc
    15781 ggttttccgg cgacgtttat cagcatgttt tttaccggct cgctgctgat tgaggtgatg
    15841 ttttcactca atggtctggg cttactgggc tacgaagcga ccgtctcgcg cgattatcct
    15901 gtaatgtttg gtaccttgta tattttcacc ctgattggcc tgctgctgaa tattgtcagt
    15961 gatatcagct atacgctggt tgatccgcgt attgattttg agggacgtta atgtcgcgac
    16021 tcagccccgt caatcaggcc cgttgggcgc gttttcgtca taaccgtcgc ggctactggt
    16081 cgttatggat tttcctcgtc ttgtttggtt tgagtttgtg ttcagagctt atcgccaacg
    16141 ataaaccatt gctggtacgt tatgacggca gttggtattt cccgttgttg aaaaactaca
    16201 gcgaaagcga ttttggcggc ccgctggcaa gtcaggctga ttatcaggac ccgtggctga
    16261 aacaacggct ggaaaataac ggctgggtac tgtgggcacc gattcgcttt ggtgctacca
    16321 gtatcaactt tgctaccgat aagcccttcc cttctccacc ctcccggcaa aactggctgg
    16381 gaacggatgc caacggcggc gatgtgctgg cacgcattct ctatggcacg cggatctcgg
    16441 ttctgtttgg cctgatgctg actctctgtt ccagcgtgat gggcgtgctg gcgggggcgc
    16501 tacaaggcta ttacggcggt aaagtcgatc tctggggaca acgctttatt gaagtatggt
    16561 cggggatgcc gacgctgttt ttgattattt tactttccag cgtcgtacag cctaacttct
    16621 ggtggctgct ggcaattact gtcttgtttg gctggatgag tctggtcggc gtggtgcggg
    16681 cggagttttt acgtactcgt aatttcgact acattcgtgc ggcgcaggcg cttggcgtca
    16741 gcgatcgcag tatcatcctg cgtcatatgt tgcctaatgc catggtcgcg accctcacct
    16801 ttttaccgtt tattttatgt agttcgatca ccaccctgac ctcactcgat ttcctcggct
    16861 tcggtctgcc gctcggttca ccgtcactcg gtgaactgct gttacaaggg aaaaataacc
    16921 ttcaggctcc gtggcttggg atcaccgcct tcttgtcggt ggcgatatta ttgtctttgc
    16981 tgatctttat tggtgaagcc gtccgcgacg catttgatcc taataaggcg gtgtagcatg
    17041 acgcaaactc tgttagcgat tgaagatttg tcggtgggtt ttcgccatca gcaaaccgta
    17101 cgtacagtag tcaatgatgt ttcactacag attgaggctg gcgaaacgct ggcgctggtg
    17161 ggtgagtcag gttcaggcaa aagcgttacc gcgctgtcaa ttttacgcct gctcccttcc
    17221 ccgccggttg aatatctctc cggcgatatt cgttttcgtg gcgaatcgct gcttcatgcc
    17281 agcgatcaaa cgttgcgcgg tgtacgcggt aataagatcg ccatgatttt tcaagagccg
    17341 atggtgtcgt taaatccatt gcataccctg gaaaaacagc tttatgaagt gctttcactc
    17401 caccgcggga tgcgtcggga agcggctcga ggcgaaattc ttaactgcct tgatcgcgtt
    17461 ggtatccgcc aggcggcaaa acggctgaca gattatccgc atcagctctc cggcggcgaa
    17521 cgccagcggg tgatgattgc gatggcgctg ttaacgcgac cggaattatt aattgccgat
    17581 gaaccgacca ccgcactgga cgtctctgtc caggcgcaga ttttacagct gttgcgcgaa
    17641 ctgcaaggcg agctgaatat gggcatgctg tttattactc ataacctcag cattgtcaga
    17701 aaactggccc accgcgtggc ggtaatgcaa aacggtcgct gtgtcgagca aaattacgcc
    17761 gctacgctat ttgcctcacc cactcatcct tacacacaaa agctactcaa cagtgaaccg
    17821 tcaggcgatc cagtgccgtt gccagaacct gcctcaacgt tgctggatgt tgaacagctt
    17881 caggttgcct tccccattcg caaagggatt ttgaagcgca ttgtggatca taatgtggtg
    17941 gtgaaaaaca tcagttttac gctacgagcg ggtgaaacac tgggtttagt gggcgagtcc
    18001 ggttccggga aaagtacgac gggactggcg ctgctgcgac tgattaattc tcagggcagc
    18061 atcatctttg acggtcagcc actgcaaaat ttaaatcgcc gccagctgtt acctattcgt
    18121 catcgcattc aggtggtatt tcaggatcca aactcctcgc tcaacccacg actcaacgtt
    18181 ttgcagatta ttgaggaagg cttacgggtt caccagccga cgctttctgc cgcacaacgc
    18241 gaacaacaag tgatagccgt gatgcatgaa gtgggattag atcctgaaac acgccaccgt
    18301 tatccggcgg agttctctgg tggtcagcga caacgtattg caattgccag ggcattaatt
    18361 cttaagccct cgctgatcat acttgatgaa ccgacatcat cactcgacaa aacggtacag
    18421 gcgcaaatat tgacgctatt gaaatcattg caacaaaagc tgcaactggc ctatttgttt
    18481 atcagccacg atttgcacgt tgtccgcgcg ttatgtcatc aggttatcgt actgcgacaa
    18541 ggggaagtag tggaacaagg accgtgcgcg cgcgtgtttg ccgcaccgca gcaggagtat
    18601 acgcgtcagc tactggcgtt gagctgacgc ttaaaaagga ttgtagtttg aaaagggttc
    18661 ggcaattgcc acaccaaaat ttttcaatcg gcatgttgca gcaaactcgt cctggcgatt
    18721 tacaaacagg cacggctcac cttcacactc cagcaccgaa cacggaactt cgatgtcgct
    18781 taacgcctgg cttagtttgt acatcaccga ccatgcatta tcaccatccg ggctaagcaa
    18841 tttaagcgcc accaggctgt tgtcaccgca cggtccattt tgcggaatcg gttcaacctt
    18901 cgaacctgcg aaaccagcag accagcgaaa gttctgcggt agacgatgga cgattgagag
    18961 ttgtaatgaa gtcacttatt ttccccggaa gcacatttac ttcacaattt gtttacatca
    19021 attttaacac atcatcaaca atccgtcttt atacagatcg taaagattga tgcctcgcct
    19081 gcgtggcctc tatggctctg atttaagtaa tatctgcggg cgtggtcacg tttgcggggc
    19141 tatatgtacc cgtttctgcg atctaactca acctttttaa ctacaatgat gtgacttttt
    19201 acataaattg attttacata aaataaacat atatcggggg aatgatagat ttgtggttga
    19261 catgcatcaa caaaggaagc cttttagctt cctcgttgtg caatagatca ccgttttttc
    19321 ggtcgactgg cgtacagaca gaagagaatg gagctgcttg cgcagaatgc aattgaccaa
    19381 atcatcggcc atgcagagtt aaaggtcgca agagaaagca atgcgccaac aattgcccct
    19441 atgccaaaac ggaaggttcc tgccagcgaa gatgccgttc ccgccatatg gggaaactca
    19501 tcaagaatga ccgccatcgc attggatgac accatcgaca cacagcccac aaacgccgca
    19561 acgccaacca ccagaatccc agccccagca gcgcactgat gaccatccac gctgccataa
    19621 taaattgtat ccacaacccc gagcggaaca tatttaacgc gccaatgcgg cgaacgaagc
    19681 ggctgttaaa gatggtcatc acgaacagga aaacaatgtt tagtgcaaag taataaccaa
    19741 agttttccgg cgcgacgtgg ttaatttcaa tgtagacaaa cggtccggcg ctcaggaacg
    19801 agaacattcc ggcaaagctg aaaccgctgg ccagcatata actcaggaca cgcttatgac
    19861 ggaacagcgc cgcaaagtta ccaatagtag tacgaatgtg aaaaggctgg cgacgctccg
    19921 gtggtaaggt ttctttgatc agaaagaaga tcattgccga agccagaatc gccgccacgg
    19981 cgaggatcca gaagatgtaa tgccagctca gccacaccag cacccagccg ccaactatcg
    20041 gtgccatcag cggtgcaatg gtcgtcacca gcatgacaaa cgacatcatc cgcgagaact
    20101 cttctttcgg gtagatatca cgcatcaaag cgttgataac catgctggcc gcagccgcag
    20161 ccagcccgtg gaaaaaacgc atcacaatca gctgatcgat ggtttgtgcc aacgcacacg
    20221 ccaccgcggc ggcggcaaac accagcgtac cgccgagcac caccggctta cgcccgaagc
    20281 tgtctgccat cggcccgtag attaactgcc ccaacgcaaa gcccagaata taagtactga
    20341 gggtcatctg cgtactgccc gccggtacgc caaactgcgc tgaaattacc ggtagcgcgg
    20401 gcagatacat atcaatcgac agcggcatca acatggccag caggccaagg ataaaaacaa
    20461 tagcaaacga cgaatgctgt cgggtggtca caacgggctc ctgaaagtca ttgaaaagtt
    20521 agacgacgct ggcaatttct tcttcagtta acggacgata ttcaccgggg gctaaatcag
    20581 catccagcgt aataccgcca atacgttcac gatgcagctc aaccacgtgg ttacccacgg
    20641 cggcgaacat gcgtttcacc tgatgataac gcccttcgct gatggtcaga cgaacctgcg
    20701 ttggggtaat cacttccagc accgcaggct tagtgagatc tttttcgtta tgcagctgca
    20761 cgcctttagc aaattgctct gccgtatcgt cagctacagg tgattccagt gtcaccagat
    20821 aggtcttctc gcaatgatgg cgcggagaag taatgcggtg cgaccactga ccatcatcag
    20881 tcatcagcac cagaccggtg gtatcgatat ccagacgtcc tgcggcgtgc agtttccagg
    20941 ctaccggttc atccagaaaa tagagcaccg ttgggtgatc agggtcgtcc gtggagcaaa
    21001 catagccctg aggcttattg agcatgaagt aacgtggacc atgttgctgc gccagcgggt
    21061 tgccatcgta agcgacatca tgttcaggaa gcagtttgaa cgctgcatta cgaacaattt
    21121 cgccatcgac ggtgacacga ttgccgcgga tttcacgccc ggcaatagca cggctaacgc
    21181 cgagttgctg tgcgataaat ttatcaagtc gcatgtgtgt gattttgcct gtaaaaacgg
    21241 aggtcgggca ttgacccgaa aatctgaact gttgtctgcc cagtatagcg gtctaataac
    21301 atccctcaag ggaaaaagat ccatggcata ctattagcag aataatctac ctacgcgaga
    21361 ccatgatttt tacactccgc ccatatcagc aagaagccgt ggatgccacg ctcaaccatt
    21421 ttcgtcgtca taaaacccct gccgttatcg tgctgcccac cggcgcaggt aaaagcctgg
    21481 tgattgccga actggcacgg ctggcgcgtg gtcgtgttct ggtgctggca cacgtcaaag
    21541 aactggtggc gcaaaaccat gcaaagtatc aggcgctggg gctggaagcc gatatttttg
    21601 ccgctgggtt aaagcgcaaa gagagccacg gtaaagtggt atttggcagc gtgcagtcgg
    21661 tcgctcgtaa tcttgatgcc tttcagggtg aattttcgct gttgattgtc gatgaatgcc
    21721 accgtattgg tgacgatgaa gagagccagt atcagcaaat cctcactcac ctgactaaag
    21781 tgaatcccca cttacgcctg ctggggctga ctgccacgcc ttttcgattg ggcaaaggct
    21841 ggatctacca gttccattat cacggcatgg tacgcggcga tgagaaagcc cttttccgtg
    21901 actgcattta tgagctgccg ctgcgttata tgattaaaca cggctatctg acgccgccag
    21961 aacgactgga tatgccagta gtgcaatacg atttcagccg cttgcaggca cagagtaacg
    22021 ggctgttcag cgaagctgat ctcaaccgtg agctgaaaaa acagcaacgc attacgccac
    22081 atatcatcag ccagatcatg gagttcgccg aaaagcgcaa aggggtaatg attttcgccg
    22141 ccaccgttga acacgcaaaa gagattgtgg gattactgcc tgccgaagat gcagcactga
    22201 ttactggcga cacccccggc gctgagcgcg atgtgttaat tgaagatttt aaagcccagc
    22261 gttttcgcta tctggtcaac gtcgcggtac tgaccaccgg atttgacgcc ccgcacgtcg
    22321 atcttatcgc cattctgcgt cctaccgaat cagtgagtct ttaccaacaa attgtcgggc
    22381 gcggtctgcg tctcgctcct ggcaagactg attgcttaat tcttgattat gcgggtaatc
    22441 ctcacgacct ctacgcgccg gaagttggta caccgaaagg caaaagtgac aacgtcccgg
    22501 tacaggtttt ctgccctgcc tgcggttttg ccaacacctt ttgggggaaa acgaccgccg
    22561 acgggacatt gattgaacac tttggtcgtc gctgtcaggg atggtttgaa gatgacgacg
    22621 gccatcgcga acagtgtgac ttccgtttcc gttttaaaaa ttgcccgcaa tgtaacgcgg
    22681 aaaacgatat tgccgcccgc cgctgccgcg aatgtgacac ggtactggtt gatccggatg
    22741 atatgttaaa agcggcgcta cgactgaaag acgcgctggt attacgctgt agcggcatgt
    22801 ctttacagca tgggcacgac gagaaaggcg aatggttgaa aatcacctat tacgatgaag
    22861 acggcgcgga tgtgagtgag cgtttccgtc tgcaaacgcc cgcccagcga actgccttcg
    22921 agcagctttt tatccgcccg catacgcgca caccgggcat ccctctgcgc tggatcaccg
    22981 ccgccgatat cctcgcccag caagccttac tgcgacatcc ggattttgtc gtcgcccgca
    23041 tgaaaggtca gtactggcag gtgcgtgaaa aagtgttcga ttacgaaggt cgttttcgtc
    23101 gggcgcacga attacgcggt taatggtagt tttgattgat gtataaggcg attgagtata
    23161 gaatctcgcc cgcttttgca tacgcaaagc agatcactta cctgttgctg ggtcgcctgt
    23221 agcaggatta atttaagaga gaaagaaatg tttactatca acgcagaagt acgtaaagag
    23281 cagggtaagg gtgcgagccg ccgcctgcgt gccgctaaca agttcccggc aatcatctac
    23341 ggtggcaaag aagcaccgct ggctatcgag ctggatcacg acaaagtcat gaacatgcaa
    23401 gctaaagctg aattctacag cgaagttctg gccatcgttg ttgacggtaa agaaatcaaa
    23461 gttaaagctc aggacgtaca gcgtcacccg tacaaaccga agctgcagca catcgacttc
    23521 gttcgcgctt aattgctgaa taagttgtaa aaaaccccgc tccggcgggg ttttttgtat
    23581 ctgcagatta tgcctgatta cggtattgct attttttgca ggccagataa ggcgttcacg
    23641 ccgcatctgg cattcagaat acaaaaccga ttaattgccg ccagacgtcc ggcgctgcaa
    23701 ttggtcgcgc aaattcggcg gcgtgccttt aatggtcaag gtatcggttg ctggatccca
    23761 gaagatgcgt tcacctaaca gcatcgcatc aaagttaata gtcaagccac cgccgctacc
    23821 ggcaaacttc gtcaactgac gcagtgtgct acggtctgcc gggaagcact cttccagttc
    23881 gtagcctttt tcagccgcaa acttcgtgaa gctcacttcg cttacgcctg ccagctcttt
    23941 cgacagcgat tccagttcga tctcttcgcc tgcctgcagc tgctcattac agtagctata
    24001 aacctgctgg cgcacgttct gtcgctctgc tttatccagt tgtgcttcgg cagtgaaatc
    24061 atcaaccgct tgcaacagcc cacggttttg cgctttcgcg ttcaatcctt cgctggcccc
    24121 gaggaaatcc ataaagaaat ccgccacttt gcgccctact cgccctttca ggaaagtgag
    24181 atagcgggtg gactctggat tggtttccca ttcggttaaa tcgatacgcg caacaatatc
    24241 cgcatgattg atatcaagat aatgggttgg gttgatgtcg agattttcgt taacgcgcat
    24301 actgctcagg ttgctcagaa ctgccaccag cagatactcc accgccagat aacggtagtg
    24361 gcaaaacagc acgaatccac cgtcagcaaa aggatatttc gctaattcgt cacgcaggcg
    24421 cccggttgcc gcgcggctaa atgccagaaa gtcctcttcg ccctgacgct gtaagcgcag
    24481 cgtctgcgcc agttcactct cttcgctaaa caagccgtaa gctttatttt tggcgctata
    24541 gacccgatgc agttctgcca ccatctcaac gacggtttct gtcggttcca gcaatgaatc
    24601 gcgcaacacc agctcaaggt tctgctcatc acgcttgata agctggtgca gagcaatctg
    24661 gttgatatcc agactcatga taaactctcc tttaagaccg ggcggtattc aaccaccgcc
    24721 ggttaagcga cgcaataaaa tatggcggtc attttacaga aggcagcgta acgagaatga
    24781 tttaacgcat aaaaaagcag aaaaaaaacc gttgctacgg taatatgttg ccctttcatc
    24841 aactaactga tttcgattta tgccacaaat ttcccgctac agtgatgaac aggttgaaca
    24901 attgctcgca gagctgctca acgtactgga aaaacataag gctccgaccg acctttccct
    24961 gatggtgtta ggcaacatgg tcactaacct tatcaacacc agcattgccc cggcccaacg
    25021 ccaggcaatt gccaactctt ttgcccgcgc cttacagtcc tctatcaacg aagacaaagc
    25081 gcactaaggg aaacagataa caggttatgg taactcatcg tcagcgctac cgtgaaaaag
    25141 tctcccagat ggtcagttgg gggcactggt ttgcactgtt caatattctg ctttcgctcg
    25201 tcattggcag ccgttacctg tttatcgccg actggccgac aacgcttgct ggtcgcattt
    25261 attcctacgt aagcattatc ggccatttca gcttcctggt gttcgccacc tacttgctga
    25321 tcctcttccc gctgaccttt atcgtcggct cccagaggct gatgaggttt ttgtccgtca
    25381 ttctggcaac ggcgggaatg acgctattac tgatcgatag cgaagtcttt actcgtttcc
    25441 atctccatct taatcccatc gtctggcagt tggttatcaa cccagacgaa aatgagatgg
    25501 cgcgcgactg gcagctgatg ttcatcagcg tgccggttat tttattgctt gaactggtgt
    25561 ttgcgacgtg gagctggcaa aagctgcgca gcctgacgcg tcgtcgacgc ttcgcgcgcc
    25621 cgctggccgc attcttattt atcgccttta tcgcctcgca tgtggtgtat atctgggccg
    25681 atgccaactt ctatcgcccg atcaccatgc agcgcgctaa cctgccgctt tcgtacccga
    25741 tgacggcgcg acgtttcctt gagaagcatg gcctgcttga tgcgcaggag tatcaacgcc
    25801 gtcttattga gcaaggtaat ccagacgccg tttccgtaca gtatccgtta agcgaactgc
    25861 gctatcgcga tatgggcacc gggcagaatg tgctgttgat tactgtcgat ggcctgaact
    25921 actcacgctt cgagaagcag atgcctgcgc tggcaggttt tgctgagcaa aatatttcgt
    25981 tcacgcgcca tatgagctcc ggcaacacta cagacaacgg catctttggc ctgttctatg
    26041 gcatctcgcc gagctatatg gacggcattc tgtcgacccg tacccctgcg gcgttaatta
    26101 ctgcgcttaa tcagcaaggc tatcagctgg gattattctc gtcagatggc tttaccagtc
    26161 cgctgtatcg ccaggcattg ttgtcagatt tctcgatgcc gagcgtacgc ccccaatccg
    26221 acgagcagac cgccacgcag tggatcaact ggctgggccg ctacgcacaa gaagataacc
    26281 gctggttctc gtgggtctct ttcaatggca ctaacattga cgacagcaat cagcaggcat
    26341 ttgcacggaa atatagccgg gcggcaggca atgtcgatga ccagatcaac cgcgtgctca
    26401 atgcactgct tgattctggc aaactggaca atacggttgt gattatcact gccggtcggg
    26461 gtattccgct gagcgaagac gaagaaacct ttgactggtc ccacggtcat ctgcaggtgc
    26521 cattagtgat tcactggcca ggcacgccgg cgcagcgtat taatgcgctg actgatcata
    26581 ccgatctgat gacgacgctg atgcaacgcc tgctacatgt cagcacacct gccagcgaat
    26641 attcgcaagg tcaggatttg ttcaaccctc aacgccgtca ttactgggtc actgcagcgg
    26701 ataacgatac gctggcaatt accaccccga aaaagacgct ggtgctgaac aataacggta
    26761 aataccgcac ttacaactta cgtggtgaaa gagtgaaaga tgaaaaacca cagttaagtt
    26821 tgttattgca agtgctgaca gacgagaagc gttttatcgc taactgatta attataaatc
    26881 agttagcgaa atatcttact tgcaatcggt gtggaaaacg gtagtattag cagccacgag
    26941 tcggcacgta gcgcagcctg gtagcgcacc gtcatggggt gtcgggggtc ggaggttcaa
    27001 atcctctcgt gccgaccaaa tcgcccaccg gataccaccg gaattaacag tttttagaca
    27061 cgaaaagccc gctaatcctt gattagcggg tttttttatg gtttttagtc accggacatc
    27121 accggattta taagctatca gccggatttt ttagttatac gcttagttat acgggcttgc
    27181 gtataactaa agccgtataa ctaaaaccct gttttttcgt gtggaatcat atacatatgg
    27241 cgagaaaaac acccccatta accacggtgc agatcaaagc agccagacca gcggaaaagg
    27301 aatacaccct acaggacggc ggagggcttt ttctcctggt caaaccgtcc ggatcaaaac
    27361 tctggcgatt ttcctactac cggccatcgg acaaaaaaag aatattgctg agttttggat
    27421 cgcttgatga tgtttccctg gctgatgcca gaaaacgccg tagcgagtac agagcgttaa
    27481 tcagtgccgg aactgacccg cagggccatg agaagaaaaa acgagaggca gaggcccgaa
    27541 gacaagggaa cacgttcgaa aatgtggcgg cggcatggta ccaggtgaaa atcagccaga
    27601 atctggcccc caacacgatt aaagacatct ggcgttcgct ggataaatat gtattcccgt
    27661 tcatcggcaa cacgccaata gataccctca ccgcccgaag gttcgttgaa gtgcttacac
    27721 ccatcaagga gcgcggcaac ctggaaacac tcaagcgggt tttacagcgc gttaatgagg
    27781 taatggatta cgccgccaac agtgggctga ttgatgccaa tccggctatg aatgtgcgta
    27841 aggcgtttcc ctcacctgta aaaaaacata tgccaacaat ccgccccgaa cagctgccgg
    27901 agcttatgca ggctttatca gtatcggcaa cagaacggca gaccagatta ctgattgaat
    27961 ggcagttact gaccgtaacc cgtcccgccg aagcgtcatc aacgcggtgg gatgaaatca
    28021 acctggacgc gaagcaatgg acgatacctg ccggacgcat gaagatgcgc agggatcacg
    28081 ttatcccgct ttccggtcag gctatggcgg tgctggaggc catgaaacca atcagccacc
    28141 accgcaatta cgttttccca agtctgaaag acccacagca gccgatgaac agccagacag
    28201 ctaacgcagc attgcggcgt atgggattcg ctggcgtgct ggtgtctcat ggattacgcg
    28261 ccatattcag cacagcagcg aacgaggaag gattcgagcc ggacgtaata gaggcggcac
    28321 ttgcccacgt cgacaccaac gaagttagac gggcatacaa ccggagcaac tacatagaaa
    28381 aacgcatcgt gctgatgcgc tggtggggcg aatttgtcga ggctgcggcg acgggcgtaa
    28441 ccctcgccag tggtaaaagg ggtatccgag ccgtgtagct gtacagaaaa ccagtaaaaa
    28501 ctacgaaaac catgtaaaac cgtcgtataa ttgcatcaaa tttaacgaca aggccgtgaa
    28561 acatgaaacc gttaagatgc aaaaaaatat cagatgcaat tgcgacgggc tgcaactggc
    28621 cctgatggtt cagcatgaat tttggtcaac ctacgatccg gaggacagaa cgacggcccc
    28681 atcaaaaaaa caggtagtag attttctggt atcccgtggc gcttccagaa atctggcggt
    28741 aagtattgat aaggtcgtac gtccggcatc tatgaagatc ggaggcaggc ccaaaaaatg
    28801 gcggtaacaa tcctggaagc ggcagaaatg ccgctttttt tataattcca tttcaaatca
    28861 tcaatataaa aacggtgtat accgtttaaa aacggtggga actgttttta cccatatccg
    28921 atgatttacc gtatttgtca ccggaataca ccggattcac aaggtaaatc acgatggaag
    28981 caatcagaaa aattatcttt cgccaggaag taaaaaaaat tatccacatc aaggcagaca
    29041 gcacgctgca aagcatgatc aacgccggag aatttccgca gggttttcgc gttggtttac
    29101 gccgtcgcgg atggtatgag gatgatgtgt tggcctggca gaaagaacgc gaacaggaag
    29161 cacgcggaac ggctgcttaa cgggtatcac agatatgaca aacacgaaaa aagcggcccc
    29221 gatatggagc cgcctttctg aacaattaac ccgctgcgcc ttatgtgtat atgatcccaa
    29281 acataagcac ggggatgata gccgctatca ggctggtggg caatgcaatc agtctggttc
    29341 agttcgttgc catacctgca atgagcgctt ttccctatac tctttaagga attgctcaag
    29401 ggcaaaagca catggtgcga atctttctga ttcatgctct atctttctgc gccgtctttt
    29461 ccgtgccggt gataatgttt tggtcaattc tttatcggtc attgtgttgt cctgcatagc
    29521 aatgcgccgt aatacctcac accacggcgc tgatagtttt tatcctttgg gttctatgcc
    29581 gcgccgcttt agttcagtgc gccccaactc tttaagccag ttggctaggc ttatgccgtc
    29641 gctctgtgct tctttgtcga attgctcttt tagctctgga gaaattcgca ttctgaattg
    29701 tggggattgc ccgtcccctt tagggctttt atcgcgtttg attattaaca agtggtcacc
    29761 tattgaatta gcctttccat tgttaggtgg ccaccttaac acaagagcac ttaaaaaagc
    29821 aaagccccgc aagtgtcatt accactcgca gggcttctaa ccaacaacgt aaactaggag
    29881 ccgttatggt tgccgtaaat catataccac accttgtaca cacacaaacg gcctttgtgt
    29941 ggcgttttct ggccctgagt gccggagaat ctcaaatcat ccacgtaacc gcctggacgg
    30001 aacgcgaagc gcgtagccgt tgcccgtccg gttgtgttgc tgtattcgcc gcccgtattc
    30061 gtcaggggga aacctatgca caataaaacc acaccgaacg cagcagccgc cgcactcact
    30121 acgctgatgc acgcgcttat tgatattgaa tgcactgcag agcttgcgca gggagaagaa
    30181 cagaaagacc ggacacagtt cgccctggaa tgtatccgat acatcgcaac gcggtcgctg
    30241 aatgacgcta aaaatattct tgttgctgat tgtgaaaatg gggggggtta tgcgtgatga
    30301 tcgttttaat tccctgaaac aggaatttcc cggcgttcct gatgatgcgg ctgatgcgct
    30361 ttcgtcaatg ccagaactta ttagagcggc ttttttctta ctttccacga gagaatataa
    30421 atcaacgggg cttgatgtac tgaatatcgc cgccgattat gcggaatatg tggcagaggc
    30481 gcgttacaga agaaaatttc ctgaggatgt aagccatgcg tgatatttac cacgaaacaa
    30541 tagaccgcgc atttcttgca ctttctcaca gtgaaaacat gctggaaata ttgcgcatat
    30601 ggcttgaaac acttggcgac aatgaacgcg acaaacaaaa atcaagaatt gccacggcat
    30661 taataacgct tcttgagcct gtaataatgg aactgcaaga aatagatcta ttgcacgaca
    30721 gatataaaga acagcacacc ggagaataaa aataatgaaa cttaaatatt ctggcttaac
    30781 tgccagtggc aacactcacc ctaaatttac gcgcggtgat atttaccgcg accagtacgg
    30841 cggcacggta atgattaagg gcgtggaaga acggcgtgta acctaccgcc gtgaaggtta
    30901 cgaatatgat tgcgtgatgc ctgtttatca gttccggcgt gatttttctc tggtacagac
    30961 cgcgccgcat aacgtgccca ccagcaacgc cagggcacgg gcaaacatcc agaagctgaa
    31021 aaccatgatt aacggattca ggggcaagaa atgaaaagcg caccgaactt aaaaaaacag
    31081 ccttacgaca agatgaccga agtcattatt tttgcgggta gtgatgcctg ggcacatgc
//
LOCUS       DADMJB010000029        30971 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.029, whole genome shotgun sequence.
ACCESSION   DADMJB010000029 DADMJB010000000
VERSION     DADMJB010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 30971)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30971)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30971
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.029"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            248..631
                     /gene="secE"
                     /locus_tag="JN078_001204"
     CDS             248..631
                     /gene="secE"
                     /locus_tag="JN078_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007665874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HAY9040478.1"
                     /translation="MSANTEAQGSGRGLEAMKWVVVVALLLVAIVGNYLYRDIMLPLR
                     ALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTA
                     VMSLILWGLDGILVRLVSFITGLRF"
     gene            633..1178
                     /gene="nusG"
                     /locus_tag="JN078_001205"
     CDS             633..1178
                     /gene="nusG"
                     /locus_tag="JN078_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005280494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HAY9040479.1"
                     /translation="MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMV
                     PTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAP
                     ISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV
                     SVSIFGRATPVELDFSQVEKA"
     gene            1338..1766
                     /gene="rplK"
                     /locus_tag="JN078_001206"
     CDS             1338..1766
                     /gene="rplK"
                     /locus_tag="JN078_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006121495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HAY9040480.1"
                     /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA
                     KTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGAGKPNKDKVGKIS
                     RAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED"
     gene            1770..2474
                     /gene="rplA"
                     /locus_tag="JN078_001207"
     CDS             1770..2474
                     /gene="rplA"
                     /locus_tag="JN078_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HAY9040481.1"
                     /translation="MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDV
                     AVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLAD
                     QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
                     VRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTM
                     GAGVAVDQAGLSASVN"
     gene            2887..3384
                     /gene="rplJ"
                     /locus_tag="JN078_001208"
     CDS             2887..3384
                     /gene="rplJ"
                     /locus_tag="JN078_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002438625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HAY9040482.1"
                     /translation="MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKA
                     GREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPTLIAYSMEHPGAAARLFKEFAKA
                     NAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRD
                     AKEAA"
     gene            3451..3816
                     /gene="rplL"
                     /locus_tag="JN078_001209"
     CDS             3451..3816
                     /gene="rplL"
                     /locus_tag="JN078_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HAY9040483.1"
                     /translation="MSITKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVAVAAG
                     PVEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKD
                     DAEALKKALEEAGAEVEVK"
     gene            4136..8164
                     /gene="rpoB"
                     /locus_tag="JN078_001210"
     CDS             4136..8164
                     /gene="rpoB"
                     /locus_tag="JN078_001210"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HAY9040484.1"
                     /translation="MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE
                     GQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRL
                     VIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD
                     KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE
                     QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ
                     LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE
                     TLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE
                     DRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN
                     RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS
                     SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG
                     PNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD
                     EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG
                     ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE
                     MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ
                     NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN
                     VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
                     DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLF
                     SRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE
                     AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD
                     ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ
                     RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL
                     PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK
                     AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
                     ESFNVLLKEIRSLGINIELEDE"
     gene            8241..12464
                     /gene="rpoC"
                     /locus_tag="JN078_001211"
     CDS             8241..12464
                     /gene="rpoC"
                     /locus_tag="JN078_001211"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HAY9040485.1"
                     /translation="MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETI
                     NYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERM
                     GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQML
                     TEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLT
                     KRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN
                     NRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK
                     QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT
                     TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
                     PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL
                     GLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAK
                     TSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQI
                     MYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKV
                     IDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQL
                     AGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR
                     RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADI
                     LVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA
                     IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK
                     LVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITE
                     VSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDV
                     LIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE
                     ARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
                     ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR
                     KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI
                     SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEA
                     PAAPQVTAEDASASLAELLNAGLGGSDNE"
     gene            12677..13216
                     /locus_tag="JN078_001212"
     CDS             12677..13216
                     /locus_tag="JN078_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat-shock protein C"
                     /protein_id="HAY9040486.1"
                     /translation="MKQEVEKWRPFGHPDGDIRDLSFLDAHQAVYVQHHEGKEPLEYR
                     FWVTYSLHCFTKDYEHQTNEEKQSLMYHAPKESRPFCQHRYNLARTHLKRTILALPES
                     NVIHAGYGSYAVIEVDLDGGDKAFYFVAFRAFREKKKLRLHVTSAYPISEKQKGKSVK
                     FFTIAYNLLRNKQLPQPSK"
     gene            complement(13626..14759)
                     /gene="thiH"
                     /locus_tag="JN078_001213"
     CDS             complement(13626..14759)
                     /gene="thiH"
                     /locus_tag="JN078_001213"
                     /EC_number="4.1.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HAY9040487.1"
                     /translation="MKTFSDRWRQLDWDDIRLRINGKTAVDVERALNASQFTRDDMMA
                     LLSPAASGYLEQLAQRAQRLTRQRFGNTVSFYVPLYLSNLCANDCTYCGFSMSNRIKR
                     KTLDEADIARESAAIREMGFEHLLLVTGEHQAKVGMDYFRRHLPALREQFSSLQMEVQ
                     PLAKTEYAELKQLGLDGVMVYQETYHEATYARHHLKGKKQDFFWRLETPDRLGRAGID
                     KIGLGALIGLSDNWRVDCYMVAEHLLWLQQHYWQSRYSVSFPRLRPCTGGIEPASIMD
                     ERQLVQTICAFRLLAPEIELSLSTRESPWFRDRVIPLAINNVSAFSKTQPGGYADNHP
                     ELEQFSPHDDRRPEAVAAALTAQGLQPVWKDWDSYLGRASQRL"
     gene            complement(14756..15601)
                     /gene="thiG"
                     /locus_tag="JN078_001214"
     CDS             complement(14756..15601)
                     /gene="thiG"
                     /locus_tag="JN078_001214"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709785.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HAY9040488.1"
                     /translation="MSSGRNISCRMATRSCFFRLLQGVEMLRIADKTFDSHLFTGTGK
                     FASSQLMVEEIRASGSQLVTLAMKRVDLRQHNDAILEPLIAAGVTLLPNTSGAKTAEE
                     AIFAAHLAREALGTNWLKLEIHPDARWLLPDPIETLKAAEMLVQQGFVVLPYCGADPV
                     LCKRLEEVGCAAVMPLGAPIGSNQGLETRAMLEIIIQQATVPVVVDAGIGVPSHAAQA
                     LEMGADAVLVNTAIAVADDPVNMAKAFRLAVEAGLLARQSGPGSRSHFAHATSPLTGF
                     LEASA"
     gene            complement(15528..15728)
                     /gene="thiS"
                     /locus_tag="JN078_001215"
     CDS             complement(15528..15728)
                     /gene="thiS"
                     /locus_tag="JN078_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HAY9040489.1"
                     /translation="MQILFNDQPMQCATGQTVHELLEQLDQRQAGAALAINQQIVPRE
                     QWTQHILQDGDQILLFQVIAGG"
     gene            complement(15712..16467)
                     /gene="thiF"
                     /locus_tag="JN078_001216"
                     /pseudo
     CDS             complement(15712..16467)
                     /gene="thiF"
                     /locus_tag="JN078_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709786.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole biosynthesis adenylyltransferase ThiF"
     gene            complement(16460..17095)
                     /gene="thiE"
                     /locus_tag="JN078_001217"
     CDS             complement(16460..17095)
                     /gene="thiE"
                     /locus_tag="JN078_001217"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709787.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HAY9040490.1"
                     /translation="MYQPDFPPVPFRLGLYPVVDSVQWIERLLDAGVRTLQLRIKDRR
                     DEEVEADVVAAIALGRRYNARLFINDYWRLAIKHQAYGVHLGQEDLQATDLNAIRAAG
                     LRLGVSTHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLEQLARHVERLADYP
                     TVAIGGISLARAPAVIATGVGSIAVISAITQAADWRLATAQLLEIAGVGDE"
     gene            complement(17095..18990)
                     /gene="thiC"
                     /locus_tag="JN078_001218"
     CDS             complement(17095..18990)
                     /gene="thiC"
                     /locus_tag="JN078_001218"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HAY9040491.1"
                     /translation="MSATKLTRREQRARAQHFIDTLEGTAFPNSKRIYLTGTHSGVRV
                     PMREIQLSPTLIGGSKEQPQFEENEAIPVYDTSGPYGDPQIAINVQQGLAKLRQPWID
                     ARGDTEELTVRSSDYTKARLADDGLDELRFSGVLTPKRAKAGRRVTQLHYARQGIITP
                     EMEFIAIRENMGRERIRSEVLRHQHPGMSFGARLPENITAEFVRDEVAAGRAIIPANI
                     NHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWSTRWGADTVMDLSTGRYI
                     HETREWILRNSPVPIGTVPIYQALEKVNGIAEDLTWEAFRDTLLEQAEQGVDYFTIHA
                     GVLLRYVPMTAKRLTGIVSRGGSIMAKWCLSHHQENFLYQHFREICEICAAYDVSLSL
                     GDGLRPGSIQDANDEAQFAELHTLGELTKIAWEYDVQVMIEGPGHVPMQMIRRNMTEE
                     LEHCHEAPFYTLGPLTTDIAPGYDHFTSGIGAAMIGWFGCAMLCYVTPKEHLGLPNKE
                     DVKQGLITYKIAAHAADLAKGHPGAQIRDNAMSKARFEFRWEDQFNLALDPFTARAYH
                     DETLPQESGKVAHFCSMCGPKFCSMKISQEVRDYAATQTIEMGMADMSENFRARGGEI
                     YLRKEEA"
     regulatory      complement(19071..19171)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(19224..19700)
                     /gene="rsd"
                     /locus_tag="JN078_001219"
     CDS             complement(19224..19700)
                     /gene="rsd"
                     /locus_tag="JN078_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma D regulator"
                     /protein_id="HAY9040492.1"
                     /translation="MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKE
                     SYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQ
                     IMDYYDSSLETAIDHDNYLEFQKVLSDIGEALEARFVLEDKLILLVLDAARVKHPA"
     gene            19795..20568
                     /gene="nudC"
                     /locus_tag="JN078_001220"
     CDS             19795..20568
                     /gene="nudC"
                     /locus_tag="JN078_001220"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HAY9040493.1"
                     /translation="MDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRAL
                     QIGEWQGEPVWLVQQQRRHDMGSVRQVIDLDVVLFQLAGRGVQLAEFYRSHKYCGYCG
                     HEMYPSKTEWAMLCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGF
                     VEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDPK
                     ELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAEYE"
     gene            20608..21672
                     /gene="hemE"
                     /locus_tag="JN078_001221"
     CDS             20608..21672
                     /gene="hemE"
                     /locus_tag="JN078_001221"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HAY9040494.1"
                     /translation="MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKVTRAQAG
                     DFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSP
                     VTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS
                     SKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRD
                     YQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIA
                     DARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVP
                     PEHAGVFVEAVHRLSEQYHR"
     gene            21682..22353
                     /gene="nfi"
                     /locus_tag="JN078_001222"
     CDS             21682..22353
                     /gene="nfi"
                     /locus_tag="JN078_001222"
                     /EC_number="3.1.21.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease V"
                     /protein_id="HAY9040495.1"
                     /translation="MDLASLRAQQIELASSVIREDRLDKDPPDLIAGADVGFEQGGEV
                     TRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQKPDLVFV
                     DGHGISHPRRLGVASHFGLMVDVPTIGVAKKRLCGKFEPLSSEPGALAPLMDKGEQLA
                     WVWRSKARCNPLFIATGHRVSVDSALAWVQRCMKGYRLPEPTRWADAVASERPAFVRY
                     TANQP"
     gene            22396..22986
                     /locus_tag="JN078_001223"
     CDS             22396..22986
                     /locus_tag="JN078_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjaG family protein"
                     /protein_id="HAY9040496.1"
                     /translation="MLQNPIHLRLERLESWQHVTFMACLCERMYPNYAMFCQQTGFGD
                     GQIYRRILDLIWETLTVKDAKVNFDSQLEKFEEAIPSADDFDLYGVYPAIDACVVLSE
                     LVHSRLSGETLEHAVEVSKTSITTVAMLEMTQVGREMSDEELKENPAVEQEWDIQWEI
                     FRLLAECEERDIELIKGLRADLREAGESNIGIIFQQ"
     gene            23173..23445
                     /gene="hupA"
                     /locus_tag="JN078_001224"
     CDS             23173..23445
                     /gene="hupA"
                     /locus_tag="JN078_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein HU-alpha"
                     /protein_id="HAY9040497.1"
                     /translation="MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQL
                     VGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK"
     gene            23458..24153
                     /locus_tag="JN078_001225"
     CDS             23458..24153
                     /locus_tag="JN078_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1481 domain-containing protein"
                     /protein_id="HAY9040498.1"
                     /translation="MNSFNEGVVSPLLSFWRRSLMLAGALLLTACSHNSSLPPFTASG
                     FAEDQGAVRIWRKDSGDNVHLLAVFSPWRSGDTTTREYRWQGDNLTLININVYSKPPV
                     NIRARFDDRGDLSFMQRESDGEKQQLSNDQIDLYRYRADQIRQISDALRQGRVVLRQG
                     RWHAMEQTVTTCEGQTIKPDLDSQAIAHIERRQSRSSVDVSVAWLEAPEGSQLLLVAN
                     SDFCRWQPNEKTF"
     gene            complement(24155..24580)
                     /gene="zraP"
                     /locus_tag="JN078_001226"
     CDS             complement(24155..24580)
                     /gene="zraP"
                     /locus_tag="JN078_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc resistance sensor/chaperone ZraP"
                     /protein_id="HAY9040499.1"
                     /translation="MKRNTKIALVMMALSAMAMGSTSAFAHGGHGMWQQNAAPLTSEQ
                     QTAWQKIHNDFYAQSSALQQQLVTKRYEYNALLAANPPDSSKINAVAKEMENLRQSLD
                     ELRVKRDIAMAEAGIPRGAGMGMGYGGCGGGGHMGMGHW"
     gene            24818..26194
                     /gene="zraS"
                     /locus_tag="JN078_001227"
     CDS             24818..26194
                     /gene="zraS"
                     /locus_tag="JN078_001227"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     ZraS"
                     /protein_id="HAY9040500.1"
                     /translation="MRFMQRSKDSLAKWLSAILPVVIVGLVGLFAVTVIRDYGRETAA
                     ARQTLLEKGSVLIRALESGSRVGMGMRMHHAQQQALLEEMAGQPGVRWFAVTDEQGTI
                     VMHSNSGMVGKQLYSPQEMQQLHPGDEEAWRRIDSADGEPVLEIYRQFQPMFAAGMHR
                     MRHMQQYAATPQAIFIAFDASNIVSAEDREQRNTLIILFALATVLLASVLSFFWYRRY
                     LRSRQLLQDEMKRKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQL
                     AQVMAKEADRLNRVVSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRF
                     TANDTLPEIQADPDRLTQVLLNLYLNAIQAIVQHGVISVTVSESGAGVKISVTDSGKG
                     IAADQLEAIFTPYFTTKAEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLPVN
                     ITRKDPQG"
     gene            26191..27515
                     /gene="zraR"
                     /locus_tag="JN078_001228"
                     /pseudo
     CDS             26191..27515
                     /gene="zraR"
                     /locus_tag="JN078_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418432.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent response regulator
                     transcription factor ZraR"
     gene            complement(27512..28801)
                     /gene="purD"
                     /locus_tag="JN078_001229"
     CDS             complement(27512..28801)
                     /gene="purD"
                     /locus_tag="JN078_001229"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HAY9040501.1"
                     /translation="MKVLVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPALQ
                     NVAIGVTDIPALLDFAQNEKIDLTIVGPEAPLVKGVVDTFRAAGLKIFGPTAGAAQLE
                     GSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMT
                     LEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRV
                     GDKDTGPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMI
                     DKQGNPKVIEFNCRFGDPETQPIMLRMKSDLVELCLAACESKLDEKTSEWDERASLGV
                     VMAAGGYPGDYRTGDVIHGLLLEEVAGGKVFHAGTKLADDEQVVTNGGRVLCVTALGH
                     TVAEAQKRAYALMTDIHWDDCFCRKDIGWRAIEREQN"
     gene            complement(28813..30402)
                     /gene="purH"
                     /locus_tag="JN078_001230"
     CDS             complement(28813..30402)
                     /gene="purH"
                     /locus_tag="JN078_001230"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HAY9040502.1"
                     /translation="MQQRRPVRRALLSVSDKAGIVEFAQALSARGVELLSTGGTARLL
                     AEKGLPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDAIMEEHQIQPIDMVV
                     VNLYPFAQTVAREGCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYDAIIKEM
                     DDNEGSLTLATRFDLAIKAFEHTAAYDSMIANYFGSMVPAYHGESKEAAGRFPRTLNL
                     NFIKKQDMRYGENSHQQAAFYIEENVKEASVATATQVQGKALSYNNIADTDAALECVK
                     EFAEPACVIVKHANPCGVAIGNSILDAYDRAYKTDPTSAFGGIIAFNRELDAETAQAI
                     ISRQFVEVIIAPSASEEALKITAAKQNVRVLTCGQWGERVPGLDFKRVNGGLLVQDRD
                     LGMVGAEELRVVTQRQPTEQELRDALFCWKVAKFVKSNAIVYAKNNMTIGIGAGQMSR
                     VYSAKIAGIKAADEGLEVKGSSMASDAFFPFRDGIDAAAAAGVTCVIQPGGSIRDDEV
                     IAAADEHGIAMLFTDMRHFRH"
BASE COUNT         7351 a         7989 c         8439 g         7192 t
ORIGIN      
        1 gcaaaagttc tgagctaatt gccgataaca tttgactcaa tgcgcactaa aagggcatca
       61 tttgatgccc tttttgcacg ctttcgtacc agaacctggc tcatcagtga ttttctttgt
      121 cataatcatt gctgagacag gctctgttga gggcgtataa tccgaaaagc taatacgcgt
      181 ttcgatttgg tttgcctcgc gatcgcgggg tgaaaatgtt tgtagaaaac ttctgacagg
      241 ttggtttatg agtgcgaata ccgaagctca aggaagcggg cgcggcctgg aagcgatgaa
      301 gtgggtcgtt gtggtggcat tgctcttggt ggcgattgtc ggcaactacc tttatcgcga
      361 cattatgctg ccgctgcgtg cgctggccgt agtaattctg attgctgcag cgggtggtgt
      421 cgcgctgtta acgacaaaag gtaaagctac cgttgctttt gcccgtgaag cgcgtaccga
      481 agtccgtaag gtcatttggc cgactcgcca ggaaacattg cacaccacgc tgattgtggc
      541 tgcggttacc gcagtaatgt cactgatcct gtggggactg gatggtattc tggttcgcct
      601 ggtatccttt atcactggcc tgaggttctg agatgtctga agctcctaaa aagcgctggt
      661 acgtcgttca ggcgttttcc ggttttgaag gccgcgtagc aacgtcgctg cgtgagcata
      721 tcaaattaca caacatggaa gatttgtttg gtgaagtcat ggtaccaacc gaagaagtgg
      781 ttgaaatccg tggcggtcag cgtcgcaaaa gcgaacgtaa attcttccct ggctacgtcc
      841 tcgttcagat ggtgatgaac gacgcgagct ggcacttggt gcgcagcgta ccgcgagtga
      901 tgggcttcat cggcggtact tccgatcgtc ctgcgccaat cagcgataaa gaagtcgatg
      961 cgattatgaa ccgcctgcag caggttggtg ataagccgcg tccgaaaacg ctgtttgaac
     1021 cgggtgaaat ggtccgtgtt aatgatggtc cgttcgctga cttcaacggt gttgttgaag
     1081 aagtggatta cgagaaatct cgtctgaaag tgtctgtttc tatcttcggt cgtgcgaccc
     1141 cggtagagct ggacttcagc caggttgaaa aagcctaacc cagcgatcaa aaaagcggcg
     1201 atttaatcgt tgcacaaggc gcgagattgg aatacaattt cgcgcctttt atttttatgg
     1261 gccttgcccg taaaaacgat tttttatatc acggggagcc tctcagaggc gttattaccc
     1321 aacttgagga atttataatg gctaagaaag tacaagccta tgtcaagctg caggttgcag
     1381 ctggtatggc taacccgagt ccgccagtag gtccggctct gggtcagcag ggcgtaaaca
     1441 tcatggaatt ctgcaaagcg ttcaacgcaa aaactgattc catcgaaaaa ggtctgccga
     1501 ttccggtagt aatcaccgtt tacgctgacc gttctttcac tttcgttacc aagaccccgc
     1561 cggcagcagt tctgctgaaa aaagcggctg gtatcaagtc tggtgccggt aagccgaaca
     1621 aagacaaagt gggtaaaatt tcccgcgctc agctgcagga aatcgcgcag accaaagctg
     1681 ccgacatgac tggtgccgac attgaagcga tgactcgctc catcgaaggt actgcacgtt
     1741 ccatgggcct ggtagtggag gactaagaaa tggctaaact gaccaagcgc atgcgtgtta
     1801 tccgcgagaa agttgatgca accaaacagt acgacatcaa cgaagctatc gcactgctga
     1861 aagagctggc gactgctaaa ttcgtagaaa gcgtggacgt agctgttaac ctcggcatcg
     1921 acgctcgtaa atctgaccag aacgtacgtg gtgcaactgt actgccgcac ggtactggcc
     1981 gttccgttcg cgtagccgta tttacccaag gtgcaaacgc tgaagctgct aaagctgcag
     2041 gcgcagaact ggtaggtatg gaagatctgg ctgaccagat caagaaaggc gaaatgaact
     2101 ttgacgttgt tattgcttct ccggatgcaa tgcgcgttgt tggccagctg ggccaggttc
     2161 tgggtccgcg cggcctgatg ccaaacccga aagtgggtac tgtaacaccg aacgttgctg
     2221 aagcggttaa aaacgctaaa gctggccagg ttcgttaccg taacgacaaa aacggcatca
     2281 tccacaccac catcggtaaa gtggactttg acgctgacaa actgaaagaa aacctggaag
     2341 ctctgctggt tgcgctgaaa aaagcaaaac cgactcaggc gaaaggcgtg tacatcaaga
     2401 aagttagcat ctccaccacc atgggtgcag gtgttgcagt tgaccaggct ggcctgagcg
     2461 cttctgtaaa ctaatgcctt tacgtgggcg gtgattttgt ctacaatctt acccccacgt
     2521 ataatgctta atgcagacgt atatccgaga tattcgggtt gtggcaaggc ggcaactgag
     2581 tgagtcgcca agagcatagc taactatgtg actggtgcga atgaaggaag ccaacgccgc
     2641 cacaagttga atagcgacgg atagaaaaga tttgttcgtt ggagcttggc ctatccaggc
     2701 ctccgtcgaa gaccgcagga gtttcgcaag aaacttaatc ccctgcgtag acggtgacag
     2761 aacgctaaga ttattctttt atattctggc ttgtttctgc tcaccgtaat taagacgctc
     2821 tctccgtttg gaggagtgaa gtgagttcca gagattttct ctggcaaaca tccaggagca
     2881 aagctaatgg ctttaaatct tcaagacaaa caagcgattg ttgctgaagt cagcgaagta
     2941 gccaaaggcg cgctgtctgc agtagttgcg gattcccgtg gcgtaactgt agataaaatg
     3001 actgaactgc gtaaagcagg tcgcgaagct ggcgtataca tgcgtgttgt tcgtaacacc
     3061 ctgctgcgcc gtgctgttga aggtactccg ttcgagtgcc tgaaagacgc gtttgttggt
     3121 ccgaccctga ttgcatactc tatggaacac ccgggcgctg ctgctcgtct gttcaaagag
     3181 ttcgcgaaag cgaatgcaaa atttgaggtc aaagccgctg cctttgaagg tgagctgatc
     3241 ccggcgtctc agatcgaccg cctggcaact ctgccgacct acgaagaagc aattgcacgc
     3301 ctgatggcaa ccatgaaaga agcttcggct ggcaaactgg ttcgtactct ggctgctgta
     3361 cgcgatgcga aagaagctgc ttaatcgcag ttatcttttt aacgcattcg cttacgtata
     3421 aacttattct gatattcagg aacaatttaa atgtctatca ctaaagatca aatcattgaa
     3481 gcagttgcag ctatgtctgt aatggacgtt gtagaactga tctctgcaat ggaagaaaaa
     3541 ttcggtgttt ccgctgctgc tgctgtagct gtagctgctg gcccggttga agctgctgaa
     3601 gaaaaaactg aattcgacgt aattctgaaa gctgctggcg ctaacaaagt tgctgttatc
     3661 aaagcagtac gtggcgcaac tggcctgggt ctgaaagaag ctaaagacct ggtagaatct
     3721 gcaccggctg ctctgaaaga aggcgtgagc aaagacgacg cagaagcact gaaaaaagct
     3781 ctggaagaag ctggcgctga agttgaagtt aaataagcca acccttccgg ttgcagcctg
     3841 agaaatcagg ctgatggctg gtgacttttt agtcaccagc ctttttgcgc tgtaaggcgc
     3901 cagtagcgtt tcacactgtt tgactactgc tgtgcctttc aatgcttgtt tctatcgacg
     3961 acttaatata ctgcgacagg acgtccgttc tgtgtaaatc gcaatgaaat ggtttaagcg
     4021 tgatagcaac aggcattgcg gaaagtgttc cattttccgg tcaacaaaat agtgttgcac
     4081 aaactgtccg ctcaatggac agatgggtcg acttgtcagc gagctgagga accctatggt
     4141 ttactcctat accgagaaaa aacgtattcg taaggatttt ggtaaacgtc cacaagttct
     4201 ggatgtacct tatctccttt ctatccagct tgactcgttt cagaaattta tcgagcaaga
     4261 tcctgaaggg cagtatggtc tggaagcagc tttccgttcc gtattcccga ttcagagcta
     4321 cagcggtaat tccgagctgc aatacgtcag ctaccgcctt ggcgaaccgg tgtttgacgt
     4381 ccaggaatgt caaatccgtg gcgtgaccta ttccgcaccg ctgcgcgtta aactgcgtct
     4441 ggtgatctat gagcgcgaag cgccggaagg caccgtaaaa gacattaaag aacaagaagt
     4501 ctacatgggc gaaattccgc tcatgacaga caacggtacc tttgttatca acggtactga
     4561 gcgtgttatc gtttcccagc tgcaccgtag tccgggcgtc ttctttgact ccgacaaagg
     4621 taaaacccac tcttcgggta aagtgctgta taacgcgcgc atcatccctt accgtggttc
     4681 ctggctggac ttcgaattcg atccgaagga caacctgttc gtacgtatcg accgtcgccg
     4741 taaactgcct gcgaccatca ttctgcgcgc cctgaactac accacagagc agatcctcga
     4801 cctgttcttt gaaaaagtta tctttgaaat ccgtgataac aagctgcaga tggaactggt
     4861 gccggaacgc ctgcgtggtg aaaccgcatc ttttgacatc gaagctaacg gtaaagtgta
     4921 cgtagaaaaa ggccgccgta tcactgcgcg ccacattcgc cagctggaaa aagacgacgt
     4981 caaacttatc gaagtcccgg ttgagtacat cgcaggtaaa gtggttgcta aagactatat
     5041 tgatgagtct accggcgagc tgatctgcgc agcgaacatg gagctgagcc tggatctgct
     5101 ggctaagctg agccagtctg gtcacaagcg tatcgaaacg ctgttcacca acgatctgga
     5161 tcacggccca tatatctctg aaaccttacg tgtcgaccca actaacgacc gtctgagcgc
     5221 actggtagaa atctaccgca tgatgcgccc tggcgagccg ccgactcgtg aagcagctga
     5281 aagcctgttc gagaacctgt tcttctccga agaccgttat gacttgtctg cggttggtcg
     5341 tatgaagttc aaccgttctc tgctgcgcga agaaatcgaa ggttccggta tcctgagcaa
     5401 agacgacatc attgatgtta tgaaaaagct catcgatatc cgtaacggta aaggcgaagt
     5461 cgatgatatc gaccacctcg gcaaccgtcg tatccgttcc gttggcgaaa tggcggaaaa
     5521 ccagttccgc gttggcttgg tacgtgtaga gcgtgcggtg aaagagcgtc tgtctctggg
     5581 cgatctggat accctgatgc ctcaggatat gatcaacgcc aagccgattt ccgcagcagt
     5641 gaaagagttc ttcggttcca gccagctgtc tcagtttatg gaccagaaca acccgctgtc
     5701 tgagattacg cacaaacgtc gtatctccgc actcggccca ggcggtctga cccgtgaacg
     5761 tgcaggcttc gaagttcgag acgtacaccc gactcactac ggtcgcgtat gtccaatcga
     5821 aacccctgaa ggtccgaaca tcggtctgat caactctctg tccgtgtacg cacagactaa
     5881 cgaatacggc ttccttgaga ctccgtatcg taaagtgacc gacggtgttg taactgacga
     5941 aattcactac ctgtctgcta tcgaagaagg caactacgtt atcgcccagg cgaactccaa
     6001 cttggatgaa gaaggccact tcgtagaaga cctggtaact tgccgtagca aaggcgaatc
     6061 cagcttgttc agccgcgacc aggttgacta catggacgta tccacccagc aggtggtatc
     6121 cgtcggtgcg tccctgatcc cgttcctgga acacgatgac gccaaccgtg cattgatggg
     6181 tgcgaacatg caacgtcagg ccgttccgac tctgcgcgct gataagccgc tggttggtac
     6241 tggtatggaa cgtgctgttg ccgttgactc cggtgtaact gcggtagcta aacgtggtgg
     6301 tgtcgttcag tacgtggatg cttcccgtat cgttatcaaa gttaacgaag acgagatgta
     6361 tccgggtgaa gcaggtatcg acatctacaa cctgaccaaa tacacccgtt ctaaccagaa
     6421 cacctgtatc aaccagatgc cgtgtgtgtc tctgggtgaa ccggttgaac gtggcgacgt
     6481 gctggcagac ggtccgtcca ccgacctcgg tgaactggcg cttggtcaga acatgcgcgt
     6541 agcgttcatg ccgtggaatg gttacaactt cgaagactcc atcctcgtat ccgagcgtgt
     6601 tgttcaggaa gaccgtttca ccaccatcca cattcaggaa ctggcgtgtg tgtcccgtga
     6661 caccaagctg gggccggaag agatcaccgc tgacatcccg aacgtgggtg aagctgcgct
     6721 ctccaaacta gatgaatccg gtatcgttta cattggtgcg gaagtgaccg gtggcgacat
     6781 tctggttggt aaggtaacgc cgaaaggtga aactcagctg accccagaag aaaaactgct
     6841 gcgtgcgatc ttcggtgaga aagcctctga cgttaaagac tcttctctgc gcgtaccaaa
     6901 cggtgtatcc ggtacggtta tcgacgttca ggtctttact cgcgatggcg tagaaaaaga
     6961 caaacgtgcg ctggaaatcg aagaaatgca gctcaaacag gcgaagaaag acctgtctga
     7021 agaactgcag atcctcgaag cgggtctgtt cagccgtatc cgtgctgtgc tggtagccgg
     7081 tggcgttgaa gctgagaagc tcgacaaact gccgcgcgat cgctggctgg agctgggcct
     7141 gacagacgaa gagaaacaaa atcagctgga acagctggct gagcagtatg acgaactgaa
     7201 acacgagttc gagaagaaac tcgaagcgaa acgccgcaaa atcacccagg gcgacgatct
     7261 ggcaccgggc gtgctgaaga ttgttaaggt atatctggcg gttaaacgcc gtatccagcc
     7321 tggtgacaag atggcaggtc gtcacggtaa caagggtgta atttctaaga tcaacccgat
     7381 cgaagatatg ccttacgatg aaaacggtac gccggtagac atcgtactga acccgctggg
     7441 cgtaccgtct cgtatgaaca tcggtcagat cctcgaaacc cacctgggta tggctgcgaa
     7501 aggtatcggc gacaagatca acgccatgct gaaacagcag caagaagtcg cgaaactgcg
     7561 cgaattcatc cagcgtgcgt acgatctggg cgctgacgtt cgtcagaaag ttgacctgag
     7621 taccttcagc gatgaagaag ttatgcgtct ggctgaaaac ctgcgcaaag gtatgccaat
     7681 cgcaacgccg gtgttcgacg gtgcgaaaga agcagaaatt aaagagctgc tgaaacttgg
     7741 cgacctgccg acttccggtc agatccgcct gtacgatggt cgcactggtg aacagttcga
     7801 gcgtccggta accgttggtt acatgtacat gctgaaactg aaccacctgg tcgacgacaa
     7861 gatgcacgcg cgttccaccg gttcttacag cctggttact cagcagccgc tgggtggtaa
     7921 ggcacagttc ggtggtcagc gtttcgggga gatggaagtg tgggcgctgg aagcatacgg
     7981 cgcagcatac accctgcagg aaatgctcac cgttaagtct gatgacgtga acggtcgtac
     8041 caagatgtat aaaaacatcg tggacggcaa ccatcagatg gagccgggca tgccagaatc
     8101 cttcaacgta ttgttgaaag agattcgttc gctgggtatc aacatcgaac tggaagacga
     8161 gtaattctcg ctcaaacagg tcactgctgt cgggttaaaa cccggcagcg gattgtgcta
     8221 actccgacgg gagcaaatcc gtgaaagatt tattaaagtt tctgaaagcg cagactaaaa
     8281 ccgaagagtt tgatgcgatc aaaattgctc tggcttcgcc agacatgatc cgttcatggt
     8341 ctttcggtga agttaaaaag ccggaaacca tcaactaccg tacgttcaaa ccagaacgtg
     8401 acggcctttt ctgcgcccgt atctttgggc cggtaaaaga ttacgagtgc ctgtgcggta
     8461 agtacaagcg cctgaaacac cgtggcgtca tctgtgagaa gtgcggcgtt gaagtgaccc
     8521 agactaaagt acgccgtgag cgtatgggcc acatcgaact ggcttccccg actgcgcaca
     8581 tctggttcct gaaatcgctg ccgtcccgta tcggtctgct gctcgatatg ccgctgcgcg
     8641 atatcgaacg cgtactgtac tttgaatcct atgtggttat cgaaggcggt atgaccaacc
     8701 tggaacgtca gcagatgctg actgaagagc agtatctgga cgcgctggaa gagttcggtg
     8761 acgaattcga cgcgaagatg ggtgcggaag caatccaggc tctgctgaag agcatggatc
     8821 tggagcaaga gtgcgaacag ctgcgcgaag agctgaacga aaccaactcc gaaaccaagc
     8881 gtaaaaagct gaccaagcgt atcaaactgc tggaagcgtt cgttcagtct ggtaacaaac
     8941 cagagtggat gatcctgacc gttctgccgg tactgccgcc agatctgcgt ccgctggttc
     9001 cgctggatgg tggtcgtttc gcgacttctg acctgaacga tctgtatcgt cgcgtcatta
     9061 accgtaacaa ccgtctgaaa cgtctgctgg atctggctgc gccggacatc atcgtacgta
     9121 acgaaaaacg tatgctgcag gaagcggtag acgccctgct ggataacggt cgtcgcggtc
     9181 gtgcgatcac cggttctaac aagcgtcctc tgaaatcttt ggccgacatg atcaaaggta
     9241 aacagggtcg tttccgtcag aacctgctcg gtaagcgtgt tgactactcc ggtcgttctg
     9301 taatcaccgt aggtccatac ctgcgtctgc atcagtgcgg tctgccgaag aaaatggcgc
     9361 tggagctgtt caaaccgttc atctacggca agctggaact gcgtggtctt gctaccacca
     9421 ttaaagctgc gaagaaaatg gttgagcgcg aagaagctgt cgtttgggat atcctggacg
     9481 aagttatccg cgaacacccg gtactgctga accgtgcacc gactctgcac cgtctgggta
     9541 tccaggcatt tgaaccggta ctgatcgaag gtaaagctat ccagctgcac ccgctggttt
     9601 gtgcggcata taacgccgac ttcgatggtg accagatggc tgttcacgta ccgctgacgc
     9661 tggaagccca gctggaagcg cgtgcgctga tgatgtctac caacaacatc ctgtccccgg
     9721 cgaacggcga accaatcatc gttccgtctc aggacgttgt tctgggtctg tactatatga
     9781 cccgtgactg tgttaacgcc aaaggcgaag gcatggtgct gactggcccg aaagaagcag
     9841 aacgtctgta tcgctctggt ctggcttctc tgcatgcgcg cgttaaagtg cgtatcaccg
     9901 agtatgaaaa agatgcaaac ggtgaattag tagcgaaaac cagcctgaaa gacacgactg
     9961 ttggccgtgc cattctgtgg atgattgtac cgaaaggtct gccttactcc atcgtcaacc
    10021 aggcgctggg taaaaaagca atctccaaaa tgctgaacac ctgctaccgc attctcggtc
    10081 tgaaaccgac cgttattttt gcggaccaga tcatgtacac cggcttcgcc tatgcagcgc
    10141 gttctggtgc atctgttggc atcgatgaca tggtcatccc ggagaagaaa cacgaaatca
    10201 tctccgaggc agaagcagaa gttgctgaaa ttcaggagca gttccagtct ggtctggtaa
    10261 ctgcgggcga acgctacaac aaagttatcg atatctgggc tgcggcgaac gatcgtgtat
    10321 ccaaagcgat gatggataac ctgcaaactg aaaccgtgat taaccgtgac ggtcaggaag
    10381 agaagcaggt ttccttcaac agcatctaca tgatggccga ctccggtgcg cgtggttctg
    10441 cggcacagat tcgtcagctt gctggtatgc gtggtctgat ggcgaagccg gatggctcca
    10501 tcatcgaaac gccaatcacc gcgaacttcc gtgaaggtct gaacgtactc cagtacttca
    10561 tctccaccca cggtgctcgt aaaggtctgg cggataccgc actgaaaact gcaaactccg
    10621 gttacctgac tcgtcgtctg gttgacgtgg cgcaggacct ggtggttacc gaagacgatt
    10681 gtggtaccca tgaaggtatc atgatgactc cggttatcga aggtggtgat gttaaagagc
    10741 cgctgcgcga tcgcgtactg ggtcgtgtaa ctgctgaaga cgttctgaag ccgggtactg
    10801 ctgatatcct cgttccgcgc aacacgctgc tgcacgaaca gtggtgtgac ctgctggaag
    10861 agaactctgt cgacgcggtt aaagtacgtt ctgttgtatc ttgtgacacc gactttggtg
    10921 tatgtgcgca ctgctacggt cgtgacctgg cgcgtggcca catcatcaac aagggtgaag
    10981 caatcggtgt tatcgcggca cagtccatcg gtgaaccggg tacacagctg accatgcgta
    11041 cgttccacat cggtggtgcg gcatctcgtg cggctgctga atccagcatc caggtgaaaa
    11101 acaaaggtag catcaagctc agcaacgtga agtcggttgt gaactccagc ggtaaactgg
    11161 ttatcacttc ccgtaatact gaactgaaac tgatcgacga attcggtcgt accaaagaaa
    11221 gctacaaagt accttacggt gcggtactgg cgaaaggcga tggcgaacag gttgctggcg
    11281 gcgaaaccgt tgcaaactgg gacccgcaca ccatgccggt tatcaccgaa gtaagcggtt
    11341 ttgtacgctt tactgacatg atcgacggtc agaccattac tcgtcagaca gacgaattga
    11401 ccggtctgtc ttcgctggtg gttctggatt ccgcagaacg taccgcaggt ggtaaagatc
    11461 tgcgtccggc actgaaaatc gttgatgctc agggtaacga cgttctgatt ccgggtaccg
    11521 atatgcctgc gcagtacttc ctgccgggta aagcgattgt tcagctggaa gatggcgtac
    11581 agatcagctc tggtgacacc ctggcgcgta ttccgcagga atccggcggt accaaggaca
    11641 tcaccggtgg tctgccgcgc gttgcggacc tgttcgaagc acgtcgtccg aaagagccgg
    11701 caatcctggc tgaaatcagc ggtatcgttt ccttcggtaa agaaaccaaa ggtaaacgtc
    11761 gtcttgttat caccccggta gacggtagcg atccgtacga agagatgatt ccgaaatggc
    11821 gtcagctcaa cgtgttcgaa ggtgaacgtg tagaacgtgg tgacgtaatt tccgacggtc
    11881 cggaagcgcc gcacgacatt ctgcgtctgc gtggtgttca tgctgttact cgttacatcg
    11941 ttaacgaagt acaggacgta taccgtctgc agggcgttaa gattaacgat aaacacatcg
    12001 aagttatcgt tcgtcagatg ctgcgtaaag ctaccatcgt taacgcgggc agctccgact
    12061 tcctggaagg cgaacaggtt gaatactctc gcgtcaagat cgcaaaccgc gaactggaag
    12121 cgaacggcaa agtgggtgca acttactccc gcgatctgct gggtatcacc aaagcgtctc
    12181 tggcaaccga gtccttcatc tccgcggcat cgttccagga gaccactcgc gtgctgaccg
    12241 aagcagccgt tgcgggcaaa cgcgacgaac tgcgcggcct gaaagagaac gttatcgtgg
    12301 gtcgtctgat cccggcaggt accggttacg cgtaccacca ggatcgtatg cgtcgccgtg
    12361 ctgcgggtga agctccggct gcaccgcagg tgactgcaga agacgcatct gccagcctgg
    12421 cagaactgct gaacgcaggt ctgggcggtt ctgataacga gtaatcgtta atccgcaaat
    12481 aacgtaaaaa cccgcttcgg cgggtttttt tatgggggga gtttagggaa agagcatttg
    12541 tcagaatatt taaggaattt ctgaatactc ataatcaatg tagagatgac taatatcctg
    12601 aaactgactg aactaattga gtcaaactcg gcaaggattc gatactattc ctgtgtaact
    12661 ttcttaagga acgagaatga aacaggaagt ggaaaagtgg cgaccttttg gacatccgga
    12721 tggtgatatt cgtgatttat catttcttga tgctcatcag gctgtctacg ttcagcatca
    12781 tgagggcaaa gagcctttag agtatcgctt ttgggttacc tactctcttc actgcttcac
    12841 aaaagattat gaacatcaga cgaacgaaga aaaacaatcg ttaatgtacc acgcgcctaa
    12901 agaatctcgt cccttctgcc agcaccgtta taacttagcg cgcacacact taaaaagaac
    12961 tattttggcg ctgccagaaa gcaacgttat tcatgccggg tatggtagct atgccgtgat
    13021 tgaggtggac ttagacggag gagataaggc attttacttt gttgcgttca gggctttcag
    13081 ggaaaagaaa aaactccgtt tgcatgtaac tagcgcttat cccatttctg aaaaacagaa
    13141 aggtaaatca gtgaaatttt tcaccattgc ctacaactta ttgagaaata agcagcttcc
    13201 tcagccctca aaataacaaa acccacctta aggtgggttt cgccagagaa ttatctctgg
    13261 tattcagaac gccattaccg gactttgcct tgaccttgcg ataatcgcag gttgcgggat
    13321 gtctgaattt cttcagtctg ctgcatcctg gaagatgaga acatgtgttc ttattttcgt
    13381 ctctatcata gttgagtatt tactctctta caatcagatc tctttcattg ctcaacaggc
    13441 gatggcttca gactttgcat tacggaattt ttaagaaagg cagggcgaaa cgaggaagaa
    13501 gcttttcgcc ctggacaaca ttcctgctga cggcactacc ataaaaaaac acaacgcttt
    13561 caacaacctt gcgtttttca tcttccgtag cggctcggaa taaatttacg ttcttacatt
    13621 ccgtctcata gtctttgcga ggcccgtccc agatagctgt cccagtcttt ccataccggc
    13681 tgcaaaccct gagcggttaa cgcggcagca accgcttccg gtctgcgatc gtcgtgcggt
    13741 gagaactgtt ccaactcggg gtgattatcg gcatagccac ctggctgcgt tttcgagaag
    13801 gcgctgacgt tattgatcgc cagcggaata acgcgatcgc gaaaccacgg tgattcccgc
    13861 gtggagagtg acagttcaat ctccggtgca agcagtcgga aggcgcagat ggtttgcact
    13921 aactggcgtt catccataat cgacgcaggc tcaatgccgc cagtacacgg gcgcaggcgc
    13981 ggaaaggaga cagagtaacg gctttgccag taatgctgtt gcagccatag caaatgttcg
    14041 gcaaccatat agcagtcaac gcgccagttg tcggaaaggc caattagcgc gccgaggcct
    14101 atcttatcaa tccccgcacg ccccagccga tccggcgttt ccagccgcca gaagaagtcc
    14161 tgttttttgc ctttcagatg atggcgggca taagtcgcct cgtgatatgt ctcctgataa
    14221 accatcacgc catccagacc aagctgcttt aactcggcgt attccgtctt cgccagcggt
    14281 tgcacttcca tttgtagtga agagaactgt tcacgcaggg cggggagatg acgacgaaag
    14341 taatccatcc ccactttcgc ctgatgttca ccagtgacta atagcagatg ttcaaagccc
    14401 atctcccgta tagcggcgct ttccctggca atatccgctt catccagcgt tttgcgcttg
    14461 atgcgattac tcatggaaaa tccgcagtac gtgcagtcgt tagcgcaaag attggaaaga
    14521 taaagcggga cgtagaaact aactgtgttg ccaaatcgct gacgggtcag acgctgcgcc
    14581 cgttgggcca gttgttccag atagccactg gcggctggcg ataacagcgc catcatatcg
    14641 tcgcgggtga attgcgaggc atttagcgcc cgctctacgt caacagccgt tttgccgttg
    14701 atacgcaggc ggatgtcatc ccagtccagt tgtcgccagc gatcgctgaa ggttttcatg
    14761 ccgatgcctc cagaaatcca gtcagcgggc tggtggcatg agcaaaatga ctgcggctgc
    14821 ccggtccgga ctgacgtgcc agcaggcctg cttctaccgc cagacgaaat gccttcgcca
    14881 tgttgacggg atcgtccgct acggcaatcg ccgtattcac taacaccgcg tcggccccca
    14941 tttccagggc ctgcgctgca tggctgggaa cgccgatgcc agcatcgaca accaccggaa
    15001 ctgtggcctg ctggataata atctccagca tggcacgggt ttccagtccc tgattcgagc
    15061 caatcggcgc gccgagcggc atcaccgctg cacagccgac ttcttccaga cgtttacaca
    15121 ataccggatc ggccccgcag taaggcagca cgacaaatcc ctgttgtacc agcatttcgg
    15181 cggctttcag agtttcgatg ggatcgggca acagccagcg ggcgtcaggg tgaatctcta
    15241 attttaacca gtttgtgcct aacgcttcac gtgccagatg ggcggcgaaa atggcttctt
    15301 ccgctgtttt cgccccggaa gtatttggca gcagggtcac acccgccgcg ataagcggtt
    15361 cgaggatagc gtcgttgtgc tggcgcaagt cgacacgttt catcgccagt gtcaccagct
    15421 ggctgccgga agcgcggatc tcctccacca tcagttgtga agaagcgaat ttccctgtgc
    15481 cggtaaacag atgtgaatca aacgttttgt ccgcaatacg taacatctca accccctgca
    15541 ataacctgaa aaagcaggat ctggtcgcca tcctgcagga tatgttgcgt ccactgctca
    15601 cgcgggacga tttgctgatt aatcgccaga gccgcgcccg cttgtcgttg gtcgagttgc
    15661 tccagtagtt cgtgaacagt ttgcccggtg gcgcactgca tcggttgatc gttaaacagg
    15721 atctgcattg cttcctccgc ataccgggca accactggcg cggcgcaacg ccaggctgcg
    15781 ccactggctc gatttaccgt cgaacagtcg gagttctccc gcaggtgtct ctataccgct
    15841 taataactta atggcttcca gtgcctgcaa agtgcccata accccgacca ccgggccaac
    15901 cacgcccgcc gtgcggcagt tgcgttctgg ctcctggtta tctggccaca ggcagcggta
    15961 acacccctgc tcccagggcg gcgtcagtac catcaactga ccgccaaatc cgaccgcgct
    16021 ggcggtgata agcggcgtgt tgagtaccac gcaggcggca ttaatctcct ggcgagtcgc
    16081 catattgtcg gtacagtcga gcaccacatc ggcccgtgca accgcatctt ttaacgcctc
    16141 acccgttaac cgttgttgta atgctgtcag ttgaatgtcg ggattcaact gtgtcagtcg
    16201 ctgttggctg acctgcgatt tcgggctgtt gatatcttca gtggtaaaga gaatttgtcg
    16261 ttacagattg cttaaatgca catcgtcgtc atctgccagt accagcgtcc cgacgccagc
    16321 gcccgccagg tatagcgcag caggtgtacc cagcccgcca agaccgataa tcagcacctg
    16381 gctgtcgagc agtttttgct gcccgtcaag agcgatatca tcgagcagga tttggcggct
    16441 ataacgcata aaatcacggt cattcatcgc caactcctgc aatttccagc aactgtgccg
    16501 ttgccaaacg ccagtctgcg gcttgagtaa tggcgctgat gacggcgata ctgccgacac
    16561 ccgttgctat caccgcaggc gcgcgtgcca gactgatacc gccaatcgcc acggtgggat
    16621 aatccgccag tcgctcaaca tgccgtgcca gctgttccag cccctgcggt gcagaaggca
    16681 tctgtttggt ttgcgtcggg aacacatgtc ccagcgcgat ataagagggg cgtgctgcca
    16741 gcgcgacgtc gatttccata tcgtcatgtg tcgaaacacc cagccgcagg cctgccgcgc
    16801 ggatggcatt gagatcggtg gcttgcaaat cttcctgccc caaatggacg ccatacgcct
    16861 gatgcttgat cgcgagccgc cagtaatcgt tgataaacaa tcgcgcgtta tagcggcggc
    16921 ccagcgcaat tgccgccacg acatcggctt ccacctcttc atcgcgccga tctttgatgc
    16981 gtagctggag agtacgtacg cctgcatcca acagacgttc gatccactgt acgctgtcca
    17041 ccactgggta cagtcctaaa cgaaaaggta caggaggaaa atcaggctga tacatcacgc
    17101 ttcctcctta cgcaggtaga tttctccgcc tctggcacgg aagttctccg acatatccgc
    17161 cattcccatt tcaatagttt gcgtggcggc gtaatcacgc acttcctggc tgattttcat
    17221 cgagcagaat ttcggcccac acatggagca aaaatgggcg actttacctg actcttgcgg
    17281 cagggtttca tcgtgataag cgcgggcggt aaacgggtcg agggccagat taaactggtc
    17341 ttcccagcga aattcgaagc gggctttcga catggcgtta tcgcgaattt gcgcgcccgg
    17401 atgccctttc gccaggtcag cggcgtgggc ggcaatctta taggtgataa gcccctgctt
    17461 aacatcttct ttattaggca gacccagatg ctcttttggt gttacgtaac agagcatcgc
    17521 gcagccaaac cagccaatca tcgccgcacc aatccccgac gtgaagtggt catagcccgg
    17581 cgcaatatcg gtagttagcg gccccagagt gtaaaacggc gcttcgtggc agtgctctaa
    17641 ctcctcggtc atattgcggc ggatcatctg catcggcacg tggcctgggc cttcaatcat
    17701 cacctgcacg tcatattccc aggcaatttt ggtcagttcg cccagcgtat gcagctcggc
    17761 aaactgcgct tcatcgttgg cgtcctgaat agaaccgggg cgcagaccgt cgcccagcga
    17821 cagcgaaacg tcataagcgg cacagatttc acaaatttcg cggaagtgtt gatagaggaa
    17881 attttcctga tgatgggaga ggcaccattt cgccataatc gaaccgccgc gagagacgat
    17941 accggtcagg cgtttcgcgg tcatcggcac atagcgcaac agtacgcccg catggatagt
    18001 gaagtaatcc acaccttgct cggcctgttc cagcagcgtg tcgcggaacg cttcccaggt
    18061 aagatcttcg gcgatcccgt taaccttctc cagcgcctgg tagatcggca ctgtaccgat
    18121 cggcaccgga ctgttacgca aaatccactc gcgggtttcg tgaatatagc gaccggtgga
    18181 gagatccatc accgtatccg ctccccagcg cgtggaccat accagctttt ccacttcttc
    18241 ttcgatggaa gaggtgaccg ccgagttgcc gatattggcg ttaactttta ccaggaagtt
    18301 acggccaata atcatcggct ccgattccgg atgattaatg ttggccggga taatcgcacg
    18361 tccggcagca acttcatcac ggacaaattc cgcagtgata ttttccggca gacgtgcgcc
    18421 aaagctcatt cccggatgct ggtggcgtaa aacttcgcta cgtatgcgct cgcggcccat
    18481 attctcgcgg atggcgatga attccatttc cggagtgatg atgccctggc gggcgtagtg
    18541 cagttgggtg acacggcgtc ctgctttggc gcgttttggt gttagtacgc cgctaaaacg
    18601 cagttcgtcg aggccatcat ctgccagccg cgctttagtg taatcggaac tgcgcacggt
    18661 aagttcttcg gtatcgccgc gcgcatcgat ccacggctgg cgtagttttg ccagcccttg
    18721 ctgcacgtta atggcgatct gcggatcgcc atatgggccg gaggtgtcgt agaccggaat
    18781 cgcttcgttt tcttcaaact gcggctgttc tttgctgccg ccgattagcg tcgggctaag
    18841 ctggatctca cgcatcggca cgcgaacgcc agagtgtgtg ccagtgaggt aaatgcgttt
    18901 tgagttggga aaggcggtgc cttccagggt gtcgataaaa tgttgggccc gggcgcgttg
    18961 ttcgcggcgg gtcagttttg ttgcagacat agctcattcc aaaaagttaa ggacgtggct
    19021 tgtcagacga cggatgaagc aagagacgat cgccgcaaag gcgatgcgat agcagattaa
    19081 ctcttgttcc cttcgcaggt attagcctga tcaggttccg cggatcccga ataaacggtc
    19141 tcagccagtt aaggcactcc gacaagaaat tagcccccac aaacggggcg ttgaatgtaa
    19201 attacgcgtt aacagcgcag aactcaagca ggatgtttga cgcgggcggc gtcaagcacc
    19261 agcagaatca gcttatcttc cagcacaaag cgcgcttcca gcgcctcgcc gatgtcagat
    19321 aaaacctttt gaaactcaag gtaattatca tgatcgatgg cggtttccag gctggaatcg
    19381 tagtaatcca taatctgttg ggtattggct tcgagttgcg gccaaatctt cgcggcgcgc
    19441 gcgagttgcc cgttgccttc cagcttatga agaatgcgct cataaatact gaaatgtccg
    19501 gcagacaagt aatcgaccag gctctgacaa aaatcatcaa gggctttttc gtttagcctc
    19561 atgtacgatt ctttgccagg cttaatgcca accagattgt agtaagccac gagcagatgc
    19621 ttacgtacat gtagccagcg atcaaccagt ttgttacttc ctctgacgcg ctccgtcagg
    19681 ttatcgagct ggttaagcat gattgactcc gcaagtttgt attcaaaaac tgctcagtga
    19741 gaaatgtaaa aaccatgtta aacatgccag tgatgcaaag gtagtgcaag agctatggat
    19801 cgtataattg aaaaattaga tcacggctgg tgggtcgtca gccatgaaca aaaattatgg
    19861 ttaccgaagg gagaattgcc atatggcgaa gcggcaaatt tcgatcttgt gggtcagcgc
    19921 gcactacaaa tcggcgaatg gcagggggaa cctgtttggt tagtacaaca gcagcggcgt
    19981 cacgatatgg ggtcggtacg tcaggtcatt gatctcgatg ttgtgctgtt tcaactggcc
    20041 ggacgaggcg tacaactggc ggagttttac cgatcgcata aatactgtgg ttactgcggg
    20101 catgaaatgt atccgagcaa aaccgaatgg gcgatgctgt gcagccattg ccgtgagcgt
    20161 tactacccgc aaatcgcccc ctgcattatt gttgccatcc gtcgcgatga ttcgatcctc
    20221 ctcgcccagc atacccgcca tcgtaacggt gtccatacag tacttgccgg attcgtcgaa
    20281 gtgggcgaaa ccctcgagca ggcagtcgcg cgggaagtga tggaagagag cggaattaaa
    20341 gttaaaaact tgcgttacgt gacttctcag ccgtggccgt ttcctcagtc tttaatgacc
    20401 gcgtttatgg cggaatatga cagcggcgac atcgtgatcg acccgaaaga attgctcgag
    20461 gcgaactggt atcgctatga cgatttgccg ttactcccgc cgcccggcac cgtagcgcgc
    20521 cgtctgatag aagatactgt ggcgatgtgt cgggcagagt atgagtgatg atacactgac
    20581 cgcctgacgc actaaggaac agccaaaatg accgaactta aaaacgatcg ttatctgcgg
    20641 gcgctgctgc gccagcccgt tgatgtcact ccagtatgga tgatgcgcca ggcgggtcgc
    20701 tatctaccgg aatataaagt cacgcgcgcc caggcgggcg attttatgtc gctgtgcaaa
    20761 aacgccgagc tggcgtgcga agtgactttg caaccgctgc gtcgctaccc gctggatgcg
    20821 gcgatcctct tttccgatat cctcaccgtg ccggacgcga tggggttagg gctctatttt
    20881 gaagccggag aaggtccgcg ttttacctcg ccagtcacct gcaaagccga cgtcgataag
    20941 ctgccaattc cggacccgga agatgagctg ggttacgtga tgaacgcggt gcgtaccatt
    21001 cgtcgcgaac tgaaaggcga agtgccgctg attggttttt ccggcagccc gtggacgctg
    21061 gcaacctaca tggtggaagg cggcagcagc aaagccttca ccgtgatcaa aaaaatgatg
    21121 tatgccgatc cgcaggcgct gcacgctcta ctcgataaac tggcgaaaag cgtcactttg
    21181 tatctgaatg cgcagattaa agccggtgct caggcagtga tgattttcga cacctggggc
    21241 ggtgtgctta ccgggcgcga ttatcaacag ttctcgctct attacatgca taaaattgtt
    21301 gatggtttac tgcgtgaaaa cgacggtcgc cgcgtaccgg tcacgctgtt taccaaaggc
    21361 ggcggacagt ggctggaagc gatggcagaa accggttgcg atgcgttggg cctcgactgg
    21421 acaacggata tcgccgatgc gcgccgccgt gtgggcaata aagtcgcgtt gcagggtaat
    21481 atggatccgt cgatgctgta cgcgccgcct gcccgcattg aagaagaagt agcgactata
    21541 cttgcaggtt tcggtcacgg cgaaggtcat gtctttaacc ttggtcacgg cattcatcag
    21601 gatgtgccgc cagaacatgc tggcgtgttc gtggaggcag tgcatcgact gtctgaacaa
    21661 tatcaccgct aaggagtgat tatggatctc gcgtcattac gcgctcaaca aatcgaactg
    21721 gcttcttctg tgatccgcga ggatcgactc gataaagatc caccggatct gatcgccgga
    21781 gccgatgtcg ggtttgagca gggcggagaa gtgacgcgag cggcgatggt gctgctgaaa
    21841 tatccctcgc ttgagctggt ggagtataaa gttgcccgca tcgccaccac catgccttac
    21901 attccaggtt ttctttcctt ccgcgaatat cctgcgctgc tggcagcgtg ggagatgctg
    21961 tcgcaaaagc cggatttagt gtttgtcgat ggtcatggga tctcgcatcc tcgccgtctt
    22021 ggcgtcgcca gccattttgg tttgatggtg gatgtgccaa cgatcggcgt ggcgaaaaaa
    22081 cggctctgcg gtaaattcga accgctctcc agcgaaccgg gcgcgctggc cccactgatg
    22141 gataaaggcg agcagctggc ctgggtctgg cgcagcaaag cgcgctgtaa cccgttgttt
    22201 atcgctaccg gccatcgggt cagcgtggac agcgcgctgg cgtgggtaca acgctgcatg
    22261 aaaggctatc gtctgccgga gccaacgcgc tgggcggacg cggtggcctc ggaacgtccg
    22321 gcgttcgtgc gctatacagc aaatcagccc taattcaggt aaactgcgga taatttccgt
    22381 atttgagaac ttaacatgtt acaaaaccca attcatctgc gtctggagcg cctggaaagc
    22441 tggcagcatg tcactttcat ggcttgctta tgcgaacgca tgtaccccaa ttacgccatg
    22501 ttctgccagc aaaccggttt tggtgatggg caaatttacc gtcgtattct cgatctcatc
    22561 tgggaaacgc tgaccgttaa agacgcaaaa gtaaatttcg acagccaact ggagaaattt
    22621 gaagaagcga ttccttcagc cgacgatttc gatctgtacg gcgtttatcc ggcaatcgat
    22681 gcctgcgtgg tgttaagtga actggtccat tcgcgtttga gtggtgaaac gctcgaacac
    22741 gcggtggaag tgagtaagac ctccatcacg accgttgcga tgctggaaat gactcaggtt
    22801 ggtcgcgaaa tgagcgatga agagcttaaa gaaaacccag ctgtagagca agaatgggac
    22861 attcagtggg aaatattccg acttttagct gagtgcgaag aacgcgatat cgagctgata
    22921 aaaggcctta gggcagacct gcgtgaggcg ggtgagagca atattggtat aatttttcag
    22981 caataagacc agaaaacgtg atttaacgcc tgatttgtcg tacttggagt cttccctttc
    23041 gccccccgtc tggtctacat ttggggggcg aaaaaaagtg gctatcggtg cgtgtatgca
    23101 ggagagtgct attctggcat ttccgtcgca ctcgatgctt agcaagcgat aaacacattg
    23161 taaggataac ttatgaacaa gactcaactg attgatgtaa ttgcagagaa agcagaactg
    23221 tccaaaaccc aggctaaagc tgctctggag tccactctgg ctgcaattac tgagtctctg
    23281 aaagaaggcg atgctgtaca actggttggt ttcggtacct tcaaagtgaa ccaccgcgct
    23341 gagcgtactg gccgcaaccc gcagaccggt aaagaaatca aaattgccgc agctaacgta
    23401 ccggcatttg tttctggcaa ggcactgaaa gacgcagtta agtaagattg cgtggcagtg
    23461 aacagtttta acgaaggggt ggtttcaccc cttttgtctt tctggcgtcg atcattgatg
    23521 ctggctggcg ctctgcttct cactgcctgt agtcataact cttcacttcc tccctttacc
    23581 gccagtggat ttgctgaaga ccagggcgcg gtacgcatct ggcgaaaaga cagcggcgat
    23641 aatgtgcatc tgcttgccgt gtttagcccg tggcgcagtg gcgataccac gacgcgagag
    23701 tatcgctggc agggcgataa cctcacgctc atcaatatca atgtttacag caaaccgccg
    23761 gtgaatattc gcgcgcgttt tgacgatcgc ggtgatctga gctttatgca acgtgaatcc
    23821 gatggggaaa agcagcagct ttctaacgac caaatcgatt tataccgtta tcgtgctgat
    23881 cagatccgcc agattagcga tgccttacgt caggggagag tcgtgctgcg ccaggggcgc
    23941 tggcatgcga tggaacagac cgtgaccacc tgcgaagggc aaaccattaa acctgattta
    24001 gattcgcagg cgatagcgca tatcgagcgc cgccagagcc gctcttctgt tgatgtcagc
    24061 gtggcatggc tggaagcgcc cgaaggttcg caattactgt tagtggcaaa ctctgatttc
    24121 tgtcgctggc aacccaacga gaaaacgttc tgatttacca gtggcccata cccatatgac
    24181 cgccaccacc gcagccgccg tagcccatgc ccattccggc tccgcgcgga atacccgctt
    24241 cagccatcgc gatatctcgt ttcacccgta actcatctaa cgactgacgc aaattctcca
    24301 tctctttggc gaccgcgtta attttgctgc tatccggtgg gttcgcggct aacagggcat
    24361 tgtattcata acgcttcgtc accagttgct gttgcagtgc gctgctttga gcgtaaaagt
    24421 cattatggat tttctgccac gctgtctgtt gttcgctggt caaaggcgcg gcattttgct
    24481 gccacatacc gtgtccgccg tgagcaaatg cagatgtcga tcccatcgcc attgctgaaa
    24541 gcgccatcat taccagggca attttcgtgt tccgtttcat ggttaatcct ccagtggttg
    24601 tcttacttcg ggtattgcat cttccgtgcc aacgatgaaa cgctgatatg acgggtaatc
    24661 tggcatgata aacgagtaaa aatgactcgc ctgctgcggg tagcgagtca tttttactca
    24721 ttgaaactta agcctttgtg ttacagcgca gggtaagcgc tgataaaaga tggcatgatt
    24781 tctgctgtca gaaagggatg agcaggcaaa gaagaagatg cgttttatgc aacgttctaa
    24841 agactcctta gctaaatggt taagcgcgat cctccccgtg gtcattgttg ggctggtagg
    24901 gttgtttgcg gtgacggtga ttcgcgatta tgggcgcgag actgccgccg ccagacaaac
    24961 gctgctggaa aaaggcagtg tacttattcg cgctcttgaa tccggctcgc gcgtcggcat
    25021 ggggatgcgc atgcatcatg cgcagcagca ggccttactg gaagaaatgg ccgggcagcc
    25081 tggagtacgt tggtttgcgg tcacggatga acaaggaaca atcgtgatgc atagcaactc
    25141 cggcatggtg ggaaaacagc tttattcccc gcaggaaatg cagcagttac atccgggaga
    25201 tgaagaagcg tggcggcgga tcgatagcgc agacggtgag cctgttctgg aaatttatcg
    25261 ccagtttcaa ccgatgtttg ctgctggaat gcaccggatg cgccatatgc agcagtatgc
    25321 cgcgacacca caagcaattt tcatcgcttt cgacgccagt aatattgtga gtgccgaaga
    25381 tcgtgagcag agaaacaccc tgattatcct cttcgccctg gcgacggtct tgctggcaag
    25441 cgtattgtca ttcttctggt atcgccgcta tctgcgctcg cgccagcttc tacaagatga
    25501 aatgaagcgc aaagagaagc tggtggcact ggggcatctg gcggcaggcg ttgcccacga
    25561 aatccgtaat ccactttcct caattaaagg gctggcgaaa tactttgccg aacgcgcgcc
    25621 agcaggggga gaagcgcatc aactggcgca ggtgatggcg aaagaagccg accgtttaaa
    25681 ccgcgtggta agcgagttgc tggaactggt taagccaacg catctggctt tgcaggcggt
    25741 ggatctcaac acgctgatta accactcatt acagctggta agccaggatg caaacagccg
    25801 ggagatccag ttacgcttta ccgccaacga cacattaccg gaaattcagg ccgatccgga
    25861 caggctgact caggtcctgt tgaatctcta tctcaatgct attcaggcga ttgttcagca
    25921 tggcgtgatt agcgtgacgg tcagcgaaag cggcgcgggc gtgaaaatca gcgttaccga
    25981 cagcggtaag ggaattgcgg cagatcagct tgaagccatc ttcactccgt acttcaccac
    26041 caaagccgaa ggcaccggat tggggctggc ggtcgtgcat aatattgttg aacaacacgg
    26101 tggtacaatt caggtcgcaa gccaggaggg aaaaggctca acgttcaccc tctggcttcc
    26161 ggtcaatatt acgcgtaagg acccacaagg atgacgcacg ataatatcga tattctggtg
    26221 gtggatgatg acattagcca ctgcactatt ttgcaggctt tactgcgcgg ctggggctat
    26281 aacgtcgcgc tggcgaacag cgggcgacag gcgctggagc aggtgcggga acaggttttt
    26341 gatcttgtgc tttgcgatgt gcgaatggcg gagatggacg gcatcgccac gctgaaagag
    26401 atcaaagcgt taaacccggc aattccggtg ctgattatga ctgcgtactc cagcgtcgag
    26461 acggcggtag aggcactgaa aactggggcg ctggattatc tcatcaagcc gctggatttc
    26521 gataacctac aggcgacgct ggaaaaggcg ctcgcgcata cgcacagtat tgatgctgaa
    26581 acacctgcgg tgactgccag ccagttcggt atggtcggta aaagcccggc gatgcaacac
    26641 ctgctcagtg aaatcgccct cgtcgcgcca tcggaagcca cagtgctgat ccacggcgat
    26701 tccggcaccg gtaaagagct ggtcgccagg gcgattcacg ccagtagcgc acgtagcgaa
    26761 aaaccgctgg taacgctcaa ctgtgcggca ctcaacgaat ccttgctgga atctgaattg
    26821 ttcggtcacg aaaaaggggc gtttactgga gccgataaac gccgggaagg gcgctttgtt
    26881 gaggcggacg gcggcacgct gtttctcgat gaaattggcg atatctcgcc gatgatgcag
    26941 gtgcgtctgc tgcgtgcgat tcaggagcgc gaagttcagc gtgtcggtag caaccagact
    27001 atctcggttg atgtccggct gattgcggcg acccatcgcg atcttgccgc agaggtgaat
    27061 gccgggcgtt ttcgctagga tctctactat cgcctgaatg tggtggcgat tgaagtacca
    27121 tcgctgcggc aacggcggga agatatccct ctgctggctg gccattttct gcagcgcttt
    27181 gccgagcgta atcgcaaggc ggtaaaaggt tttacgcccc aggcgatgga tctgttgatt
    27241 cattacgact ggccgggaaa tattcgtgag ctggaaaacg cggtggaacg ggcagtggtg
    27301 ctgctgccgg ggaatatatt tccgaacgcg agctgccgct ggcgattgcc agtacgccga
    27361 tcccgctggg gcaaagtcag gatattcagc cgctggtgga agtggaaaaa gaggtgattc
    27421 tggcggcact ggagaaaacg ggcggcaaca aaactgaagc cgcccgtcag ttagggatca
    27481 cgcgtaaaac gttattggca aaactgtcgc gttagttctg ctcgcgttcg atagcacgcc
    27541 agccgatatc tttccggcag aagcagtcgt cccagtggat atcggtcatt aaggcatagg
    27601 cgcgtttctg cgcttctgcc acggtatgac ccagcgcggt gacgcacagt acgcgcccgc
    27661 cgttggtcac tacctgctcg tcatccgcca gttttgtgcc cgcgtggaac actttgccgc
    27721 ctgccacttc ttccagcagc aggccgtgga tcacgtcacc ggtgcggtaa tcacccggat
    27781 atccacccgc agccatcacc acgccgagag aagcgcgttc atcccactcg gacgttttct
    27841 cgtccagttt gctttcacag gccgccaggc agagctcaac cagatcggac ttcatgcgca
    27901 gcataatcgg ctgggtttcc ggatcgccaa agcggcagtt aaattcaata accttcggat
    27961 tgccctgttt gtcgatcatc aggcccgcgt agagaaaacc ggtgtaggtg ttgccttccg
    28021 ccgccatgcc tttcacggtt ggccagataa tacgttccat ggtgcgctga tgaacgtcat
    28081 cggttactac cggcgcgggg gagtaagcgc ccatcccgcc ggtgtttggt ccggtatctt
    28141 tatcgcctac gcgtttgtga tcctggctgg tagccatcgg cagcacatgc tcgccgtcca
    28201 ccatcacgat aaagctcgct tcttcgccat cgaggaactc ttcgataacg atgcgatgac
    28261 ccgcgtcgcc aaaagcgttg cccgccagca tatcgtgaac agccgcttcc gcttcttcca
    28321 gcgtcatcgc cacgataacg cctttcccgg cagccagacc gtccgcttta atgacgattg
    28381 gcgcgccttt ctcacgcaga tacgccagcg caggttctac ctcggtgaag ttctggtatt
    28441 ccgccgtagg gatcttatgg cgggccagga aatctttggt aaacgctttt gagccttcca
    28501 gttgggccgc acctgcggtt gggccgaaga ttttcagccc ggcggcgcgg aaggtatcga
    28561 ccacgccttt caccagcggc gcttccgggc cgacgatggt cagatcaatc ttttcgtttt
    28621 gtgcgaaatc caacagcgcc gggatatcgg tcacgccaat agcaacgttt tgcagcgcgg
    28681 gttccagcgc agtgcctgca ttacccggag caacaaaaac agtctcaacc agcggcgact
    28741 gggccgcttt ccaggccagc gcgtgctcgc gcccgccgtt accaatcact aatactttca
    28801 tctattgctc cattaatggc ggaagtggcg catgtcggtg aagagcatcg caataccgtg
    28861 ctcgtcggcg gcggcaatca cttcgtcatc acggatggaa ccgccaggct ggattacgca
    28921 ggtcacgccc gcagcggcgg cggcatcaat accgtcgcgg aacgggaaga acgcgtcaga
    28981 agccatcgag gaacctttca cttccaggcc ttcatcggca gctttaatac cggcgatttt
    29041 cgcggagtac acgcggctca tctggcccgc gccaataccg atggtcatat tgtttttggc
    29101 atagacgata gcattggatt tcacgaactt cgccactttc cagcagaaca gcgcatcgcg
    29161 cagttcctgt tcggtcggct gacgttgggt gacgacgcgc agttcttccg caccgaccat
    29221 ccccaggtca cgatcctgaa ccagcagacc gccgttcacg cgtttgaaat caagacccgg
    29281 aacacgctcg ccccactgac cgcaggtcag aacgcgtacg ttctgcttgg cggcggtgat
    29341 tttcagggct tcttcgctgg cggaaggcgc aataatcact tcgacaaact gacgagaaat
    29401 gatggcctgt gcggtttccg catctagctc gcggttaaag gcaatgatgc cgccgaatgc
    29461 ggaggttggg tcggttttgt acgcgcgatc gtaagcatca agaatggaat tgccgatagc
    29521 tacaccgcaa gggttggcgt gcttcacaat cacacatgcc ggctcggcga actctttcac
    29581 gcactccagc gccgcatcgg tatcggcgat gttgttataa gagagggctt taccctgaac
    29641 ctgggttgcg gtagcaacgg aggcttcttt cacattctct tctatataga aggcagcctg
    29701 ctggtggctg ttctcgccgt aacgcatatc ctgcttctta atgaagttca ggttcagcgt
    29761 gcgtgggaag cgaccggcgg cttctttgct ttcaccgtgg tacgccggaa ccatgctgcc
    29821 gaagtagttg gcaatcatgc tgtcgtaggc ggcagtgtgt tcgaaggctt tgatggcgag
    29881 gtcgaaacgg gttgcaagcg tcagcgatcc ttcgttgtca tccatctctt taataatggc
    29941 gtcgtagtcg ctgctcttca ccacgattgc gacatcttta tggttcttag cggcggagcg
    30001 caccatggtc gggccgccga tatcgatgtt ctcaaccgca tcttccagcg agcagccttc
    30061 acgagcaaca gtctgggcga acggatacag gttaacaacc accatatcga taggctggat
    30121 ctgatgttct tccataatgg catcgtcctg gccgcgacgg cccagaatgc caccatgtac
    30181 tttcggatgc agggtcttca cgcgtccatc catcatctcc gggaaaccgg tgtaatcgga
    30241 aacttcggtt accggcagac ctttttctgc taacagacgg gcagtgcccc ctgtagacag
    30301 cagctccaca ccgcgtgcgg aaagtgcctg ggcgaattcg acgataccgg ctttgtcaga
    30361 aacactgagc agagcgcggc ggactggacg acgttgttgc atggtaaatc ccctggattt
    30421 gactattaca gagagcgtta gctgaatttt tcgcgaaaaa ctcagctaac gcccctaacg
    30481 gggcatcctt atttttcgcc cgcattgtaa cgaaaacgtt tgcgcaacgc tcgcgaattt
    30541 ttctctttca atggtgatca caattttgac agtggctacc gtgggaaaaa tacagaaatt
    30601 acattgatga ttgtggataa ctctgtgcgt aaaaaggtat aaagcggggt tttgctgggg
    30661 aatgcagcag tcagtcattt ttctgcaatt tttctattgc ggcctgcgga gaactcccta
    30721 taatgcacct ccatcgacac ggcggatgtg aatcacttca cacaaacagc cggttcggtt
    30781 gaagagaaaa atcctgaaat tcagggttga ctctgaaaga ggaaagcgta atatacgcca
    30841 cactcacgac agtgcgctaa agctcgtcgc aactgctctt taacaattta tcagacaatc
    30901 tgtgtgggca ctcgaagata cggattctta acgtcgcaag acgaaaaatg aataccaagt
    30961 ctcaagagtg a
//
LOCUS       DADMJB010000030        30293 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.030, whole genome shotgun sequence.
ACCESSION   DADMJB010000030 DADMJB010000000
VERSION     DADMJB010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 30293)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30293)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30293
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.030"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(1..868)
                     /locus_tag="JN078_001231"
                     /pseudo
     CDS             complement(1..868)
                     /locus_tag="JN078_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310631.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-trehalose-phosphate synthase"
     gene            complement(843..1643)
                     /gene="otsB"
                     /locus_tag="JN078_001232"
                     /pseudo
     CDS             complement(843..1643)
                     /gene="otsB"
                     /locus_tag="JN078_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416411.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-phosphatase"
     gene            complement(1810..2799)
                     /locus_tag="JN078_001233"
     CDS             complement(1810..2799)
                     /locus_tag="JN078_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose ABC transporter permease AraH"
                     /protein_id="HAY9040503.1"
                     /translation="MMSSVSTSGSGAPKSSFSFGRIWDQYGMLVVFAVLFIACAIFVP
                     NFATFINMKGLGLAISMSGMVACGMLFCLASGDFDLSVASVIACAGVTTAVVINLTES
                     LWIGVAAGLLLGILCGLVNGFVIAKLKINALITTLATMQIVRGLAYIISDGKAVGIED
                     ESFFALGYANWFGLPAPIWLTVACLIIFGLLLNKTTFGRNTLAIGGNEEAARLAGVPV
                     VRTKIIIFVLSGLVSAIAGIILASRMTSGQPMTSIGYELIVISACVLGGVSLKGGIGK
                     ISYVVAGILILGTVENAMNLLNISPFAQYVVRGLILLAAVIFDRYKQKAKRTV"
     gene            complement(2811..4325)
                     /locus_tag="JN078_001234"
     CDS             complement(2811..4325)
                     /locus_tag="JN078_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose ABC transporter ATP-binding protein
                     AraG"
                     /protein_id="HAY9040504.1"
                     /translation="MQQSTPYLSFRGIGKTFPGVKALTDISFDCYAGQVHALMGENGA
                     GKSTLLKILSGNYAPTTGSVVINGQEMSFSDTTAALNAGVAIIYQELHLVPEMTVAEN
                     IYLGQLPHKGGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVEIAKALAR
                     NAKIIAFDEPTSSLSAREIDNLFRVIRELRKEGRVILYVSHRMEEIFALSDAITVFKD
                     GRYVKTFTDMQQVDHDALVQAMVGRDIGDIYGWQPRSYGEERLRLDAVKAPGVRTPIS
                     LAVRSGEIVGLFGLVGAGRSELMKGLFGGTQITAGQVYIDQQPIDIRKPSHAIAAGMM
                     LCPEDRKAEGIIPVHSVRDNINISARRKHVLGGCVINNGWEENNADQHIRSLNIKTPG
                     AEQLIMNLSGGNQQKAILGRWLSEEMKVILLDEPTRGIDVGAKHEIYNVIYALAAQGV
                     AVLFASSDLPEVLGVADRIVVMREGEIAGELLHEQADERQALSLAMPKVSQAVA"
     gene            complement(4395..5383)
                     /locus_tag="JN078_001235"
                     /pseudo
     CDS             complement(4395..5383)
                     /locus_tag="JN078_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001397210.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose ABC transporter substrate-binding
                     protein"
     gene            6097..6600
                     /locus_tag="JN078_001236"
     CDS             6097..6600
                     /locus_tag="JN078_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin-like protein"
                     /protein_id="HAY9040505.1"
                     /translation="MATAGMLLKLNSQMNREFYASNLYLHLSNWCSEQSLNGTATFLR
                     AQAQSNVTQMMRMFNFMKSVGATPIVKAIDVPGEKLNSLEELFQKTMEEYEQRSSTLA
                     QLADEAKELNDDSTVNFLRDLEKEQQHDGLLLQTILDEVRSAKLAGMCPVQTDQHVLN
                     VVSHQLH"
     gene            complement(6679..6930)
                     /locus_tag="JN078_001237"
     CDS             complement(6679..6930)
                     /locus_tag="JN078_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416416.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2766 domain-containing protein"
                     /protein_id="HAY9040506.1"
                     /translation="MSQPLNADQELVSDVVACQLVIKQILDVLDVIAPVEVREKMSSQ
                     LKNIDFSNHPAAADPVTMRAIQKAIALIELKFTPQGESH"
     gene            complement(7045..7131)
                     /gene="azuC"
                     /locus_tag="JN078_001238"
     CDS             complement(7045..7131)
                     /gene="azuC"
                     /locus_tag="JN078_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein AzuC"
                     /protein_id="HAY9040507.1"
                     /translation="MKLRKILKSMFNNYCKTFKDVPPGNMFR"
     gene            7394..7717
                     /locus_tag="JN078_001239"
     CDS             7394..7717
                     /locus_tag="JN078_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040508.1"
                     /translation="MRLLILTLSLITLAGCTVTRQAHVSEVDAATGIVRLVYDQAFLQ
                     HAHTDRYVSRGIADRACQQEGYTHAIPFGQPVGNCSLFAGSLCLNTEFTLSYQCHHSA
                     FPVFL"
     gene            7888..8385
                     /gene="ftnA"
                     /locus_tag="JN078_001240"
     CDS             7888..8385
                     /gene="ftnA"
                     /locus_tag="JN078_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HAY9040509.1"
                     /translation="MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLR
                     RHAQEEMTHMQHLFDYLTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQKIN
                     ELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKELST
                     LDTQN"
     gene            complement(8423..8662)
                     /locus_tag="JN078_001241"
     CDS             complement(8423..8662)
                     /locus_tag="JN078_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YecH family protein"
                     /protein_id="HAY9040510.1"
                     /translation="MDSIHGHEVLNMMIESGEQYTHASLEAAIKARFGEQARFHTCSA
                     EGMTAGELVAFLAAKGKFIPSKDGFSTDQSKICRH"
     gene            8853..10064
                     /gene="tyrP"
                     /locus_tag="JN078_001242"
     CDS             8853..10064
                     /gene="tyrP"
                     /locus_tag="JN078_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000797569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine transporter TyrP"
                     /protein_id="HAY9040511.1"
                     /translation="MKNRTLGSVFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLW
                     ALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGA
                     GELLASSISDWTGISMSATAGVLLFTFVAGGVVCVGTSLVDLFNRFLFSAKIIFLVVM
                     LVLLLPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMDGNVRKLRRVF
                     ITGSAIPLVAYIFWQVATLGSIDSTTFMGLQANHAGLNGLLQALREMVASPHVELAVH
                     LFADLALATSFLGVALGLFDYLADLFQRSNTVGGRLQTGAITFLPPLAFALFYPRGFV
                     MALGYAGVALAVLALIIPSLLTWQSRKHNPQAGYRVKGGRPALVVVFLCGIAVIGVQF
                     LIAAGLLPEVR"
     gene            complement(10126..10791)
                     /gene="yecA"
                     /locus_tag="JN078_001243"
     CDS             complement(10126..10791)
                     /gene="yecA"
                     /locus_tag="JN078_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein YecA"
                     /protein_id="HAY9040512.1"
                     /translation="MKTGPLNESELEWLDDILTKYNTNHAILDVAELDDLLTAVLSSP
                     QEIEPEQWLVAVWGGADYVPRWASEKEMTRFMNLAFQHMADTAERLNEFPEQFEPLFG
                     LREVDGSELTIVEEWCFGYMRGVALSDWSTLPDSLKPALEAIALHGTEENFERVEKMS
                     PEAFEESVDAIRLAALDLHAYWMAHPQEKAVQQPIKAEEKPGRNDPCPCGSGKKFKQC
                     CLH"
     gene            complement(10987..11073)
                     /locus_tag="JN078_001244"
     tRNA            complement(10987..11073)
                     /locus_tag="JN078_001244"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11037..11039),aa:Leu,seq:taa)
     gene            complement(11086..11159)
                     /locus_tag="JN078_001245"
     tRNA            complement(11086..11159)
                     /locus_tag="JN078_001245"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11125..11127),aa:Cys,seq:gca)
     gene            complement(11214..11289)
                     /locus_tag="JN078_001246"
     tRNA            complement(11214..11289)
                     /locus_tag="JN078_001246"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11254..11256),aa:Gly,seq:gcc)
     gene            complement(11441..11989)
                     /gene="pgsA"
                     /locus_tag="JN078_001247"
     CDS             complement(11441..11989)
                     /gene="pgsA"
                     /locus_tag="JN078_001247"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HAY9040513.1"
                     /translation="MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAV
                     TDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIARE
                     IIISALREWMAELGKRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVA
                     AVLTLWSMLQYLSAARADLLDQ"
     gene            complement(12046..13878)
                     /gene="uvrC"
                     /locus_tag="JN078_001248"
     CDS             complement(12046..13878)
                     /gene="uvrC"
                     /locus_tag="JN078_001248"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310678.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HAY9040514.1"
                     /translation="MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLS
                     SYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSY
                     PFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR
                     NRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETAS
                     QNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKV
                     LGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLS
                     ELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEV
                     KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRY
                     GKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLET
                     LFFEPEDEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGP
                     KRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH"
     gene            complement(13875..14531)
                     /gene="uvrY"
                     /locus_tag="JN078_001249"
     CDS             complement(13875..14531)
                     /gene="uvrY"
                     /locus_tag="JN078_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrY/SirA/GacA family response regulator
                     transcription factor"
                     /protein_id="HAY9040515.1"
                     /translation="MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCR
                     TNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYL
                     SKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
                     ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ
                     "
     gene            14826..15002
                     /locus_tag="JN078_001250"
     CDS             14826..15002
                     /locus_tag="JN078_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040516.1"
                     /translation="MIKIFIGHYINVFYSTADITLKKQPLLFLAKLMVYSAALTFFTA
                     NFHCNMTRKINEYA"
     gene            14989..15213
                     /locus_tag="JN078_001251"
     CDS             14989..15213
                     /locus_tag="JN078_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2594 family protein"
                     /protein_id="HAY9040517.1"
                     /translation="MSTPDFSTAENNQELANEVSCLKAMLTLMLQAMGQADAGRVMLK
                     MEKQLALIEDETQAAVFSKTVKQIKQAYRQ"
     gene            complement(15280..16028)
                     /gene="sdiA"
                     /locus_tag="JN078_001252"
                     /pseudo
     CDS             complement(15280..16028)
                     /gene="sdiA"
                     /locus_tag="JN078_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310681.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator SdiA"
     gene            complement(16258..17010)
                     /gene="yecC"
                     /locus_tag="JN078_001253"
     CDS             complement(16258..17010)
                     /gene="yecC"
                     /locus_tag="JN078_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine ABC transporter ATP-binding protein
                     YecC"
                     /protein_id="HAY9040518.1"
                     /translation="MSAIEVKNLVKKFQGQTVLHGIDLEVKPGEVVAIIGPSGSGKTT
                     LLRSINLLEQPEAGTITVGDITIDTARSLSQQKSLIRQLRQHVGFVFQNFNLFPHRTV
                     LENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA
                     MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD
                     LGRIVEQGAAKALFADPQQPRTRQFLEKFLLQ"
     gene            complement(17007..17675)
                     /gene="tcyL"
                     /locus_tag="JN078_001254"
     CDS             complement(17007..17675)
                     /gene="tcyL"
                     /locus_tag="JN078_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter permease"
                     /protein_id="HAY9040519.1"
                     /translation="MQESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMR
                     LSPIWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQFGIELDPILSAMIGLSLNTAAY
                     AAETLRAAISSIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDT
                     SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQE
                     REPK"
     gene            complement(17690..18676)
                     /gene="dcyD"
                     /locus_tag="JN078_001255"
     CDS             complement(17690..18676)
                     /gene="dcyD"
                     /locus_tag="JN078_001255"
                     /EC_number="4.4.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-cysteine desulfhydrase"
                     /protein_id="HAY9040520.1"
                     /translation="MPLHNLTRFPRLEFIGAPTPLEYLPRFSDYLGREIFIKRDDVTP
                     MAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENP
                     IGTTAENYLTNGNRLLLNLFNTQIEMCDTLTDPNAQLEELATRVEAQGFRPYVIPVGG
                     SNALGALGYVESALEIAQQCEGAVNISSVVVASGSAGTHAGLAVGLEHLMPESELIGV
                     TVSRSVADQLPKVVNLQQAIAKELELTASAEILLWDDYFAPGYGVPNDEGMEAVKLLA
                     RLEGILLDPVYTGKAMAGLIDGISQKRFKDEGPILFIHTGGAPALFAYHPHV"
     gene            complement(18781..19581)
                     /gene="tcyJ"
                     /locus_tag="JN078_001256"
     CDS             complement(18781..19581)
                     /gene="tcyJ"
                     /locus_tag="JN078_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY9040521.1"
                     /translation="MKLAHLGRQALMGVMAVALVAGMSVKSFADEGLLNKVKERGTLL
                     VGLEGTYPPFSFQGDDGKLTGFEVEFAQQLAKHLGVEASLKPTKWDGMLASLDSKRID
                     VVINQVTISDERKKKYDFSTPYTISGIQALVKKGNEGTIKTAADLKGKKVGVGLGTNY
                     EEWLRQNVQGVDVRTYDDDPTKYQDLRVGRIDAILVDRLAALDLVKKTNDTLAVTGEA
                     FSRQESGVALRKGNEDLLKAVNDAIAEMQKDGTLQALSEKWFGADVTK"
     gene            complement(19669..20220)
                     /gene="fliZ"
                     /locus_tag="JN078_001257"
     CDS             complement(19669..20220)
                     /gene="fliZ"
                     /locus_tag="JN078_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310687.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulatory protein FliZ"
                     /protein_id="HAY9040522.1"
                     /translation="MMVQHLKRRPLSRYLKDFKHSQAHCAHCRKLLDRITLVRDGKIV
                     NKIEISRLDTLLDENGWQVEQQSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEM
                     SPGTVREYVVRLRRLGNHLHEQNISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQ
                     HYQRQTCTGLVQKSSSLPASDIY"
     gene            complement(20266..20985)
                     /locus_tag="JN078_001258"
     CDS             complement(20266..20985)
                     /locus_tag="JN078_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HAY9040523.1"
                     /translation="MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDL
                     LQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQ
                     AIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELV
                     TDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGE
                     SRVSQLHSQAIKRLSTKLGKL"
     gene            complement(21329..23011)
                     /locus_tag="JN078_001259"
     CDS             complement(21329..23011)
                     /locus_tag="JN078_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000079739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin FliC"
                     /protein_id="HAY9040524.1"
                     /translation="MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDD
                     AAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSEINNNLQRILELTVQASTG
                     TNSDSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLAKDGSMKIQVGANDGQTITIDL
                     KKIDSDTLGLNGFNVNGKGTIANKAATVSDLTAAGATGTGPYAVTTNNTALSASDALS
                     RLKTGDTVTTTGSSAAIYTYDAAKGNFTTQATVADGDVVNFANTLKPAAGTTASGVYT
                     RSTGDVKFDVDANGDVTIGGKAAYLDATGNLSTNNAGIASSAKLSDLFASGSTLATTG
                     SIQLSGTTYNFGAAATSGVTYTKTVSADTVLSTVQSAATANTAVTGATIKYNTGIQSA
                     TASFGGANTNGAGNSNDTYTDADKELTTTASYTINYNVDKDTGTVTVASNGAGATGKF
                     AATVGAQAYVNSTGKLTTETTSAGTATKDPLAALDEAISSIDKFRSSLGAIQNRLDSA
                     VTNLNNTTTNLSGAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQ"
     gene            23277..24683
                     /gene="fliD"
                     /locus_tag="JN078_001260"
     CDS             23277..24683
                     /gene="fliD"
                     /locus_tag="JN078_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HAY9040525.1"
                     /translation="MASISSLGVGSGLDLSSILDSLTAAQKATLTPISNQQSSFTAKL
                     SAYGTLKSALTTFQTANTALSKADLFSATSTTSSTTAFSATTAGNAIAGKYTISVTHL
                     AQAQTLTTRTTRDDTKTAIATSDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNA
                     KAGVSASIINVGNGEYRLSVTSNDTGLDNAMTLSVSGDDALQSFMGYDASASSNGMEV
                     SVAAKNAQLTVNNVAIENSSNTISDALENITLNLNDVTTGNQTLTITQDTSKAQTAIK
                     DWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGDSTLRTIQTQLKSMLSNTVS
                     SSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGDGKKTGITTTIGS
                     NLTSWLSTTGIIKAATDGVSKTLNKLTKDYNAASDRIDAQVARYKKQFTQLDVLMTSL
                     NSTSSYLTQQFENNSNSK"
     gene            24708..25118
                     /gene="fliS"
                     /locus_tag="JN078_001261"
     CDS             24708..25118
                     /gene="fliS"
                     /locus_tag="JN078_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HAY9040526.1"
                     /translation="MYAAKGTQAYAQIGVESAVMSASQQQLVTMLFDGVLSALVRARL
                     FMQDNNQQGKGVSLSKAINIIENGLRVSLDEESKDELTQNLIALYSYMVRRLLQANLR
                     NDVSAVEEVEALMRNIADAWKESLLSPSLIQDPV"
     gene            25118..25484
                     /gene="fliT"
                     /locus_tag="JN078_001262"
                     /pseudo
     CDS             25118..25484
                     /gene="fliT"
                     /locus_tag="JN078_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001015018.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulatory protein FliT"
     gene            25562..27049
                     /gene="amyA"
                     /locus_tag="JN078_001263"
     CDS             25562..27049
                     /gene="amyA"
                     /locus_tag="JN078_001263"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HAY9040527.1"
                     /translation="MRNPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPA
                     YKGASGGYSVGYDSYNLFDLGEFDQKGSIPTKYGDKVQLLAAIDALKRNDIAVLLDVV
                     VNHKMGADEKEAIRVQRVNADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCF
                     SGIDHIENPDEDGIFKIVNDYTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKY
                     WARWVMEQTQCDGFRLDAVKHIPAWFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQT
                     YIDQVEGKTMLFDAPLQMKFHEASRMGRDYDMTQIFTGTLVEADPFHAVTLVANHDTQ
                     PLQALEAPVEPWFKPLAYALILLRENGVPSVFYPDLYGAHYEDVGGDGQTYPIDMPII
                     EQLDELILARQRFAHGVQTLFFDHPNCIAFSRSGTDEYPGCVVVMSNGDDGEKTIHLG
                     ENYGNKTWRDFLGNRQESVITDEHGEATFFCNGGSVSVWVIEEVI"
     gene            complement(27083..27496)
                     /locus_tag="JN078_001264"
     CDS             complement(27083..27496)
                     /locus_tag="JN078_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310694.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HAY9040528.1"
                     /translation="MKKLAIAGALMLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQ
                     RALVSPEAIGSLIVTKEGDTLDCRQWQRVIAVPGKLALMSDDLTNVTVKRELYEVERD
                     GNTIEYDGMTMERVDRPTAECAAALDKAPLPTPLP"
     gene            27683..28888
                     /gene="yedE"
                     /locus_tag="JN078_001265"
     CDS             27683..28888
                     /gene="yedE"
                     /locus_tag="JN078_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HAY9040529.1"
                     /translation="MSWQQFKHAWLIKFWAPIPAVIAAGILSTYYFGITGTFWAVTGE
                     FTRWGGQLLQLFGVHAEEWGYFKIIHLEGSPLTRIDGMMILGMFGGCFAAALWANNVK
                     LRMPRSRIRIMQAIIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFAIATAIGSW
                     FGARFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRFRLGMLVFFGMLGWALLTAMNQ
                     PKLGLAMLFGVGFGLLIERAQICFTSAFRDMWITGRTHMAKAIIIGMAVSAIGIFSYV
                     QLGVEPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGS
                     TILAYYWDDFAPALATDWDKINLLKTFGPMGGLLVTYLLLFTALMLIIGWEKRFFRRA
                     APQTAKEIA"
     gene            28885..29118
                     /gene="yedF"
                     /locus_tag="JN078_001266"
     CDS             28885..29118
                     /gene="yedF"
                     /locus_tag="JN078_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HAY9040530.1"
                     /translation="MKNIVPDYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCP
                     QSINNIPLDARNHGYTVRDIQQDGPTIRYLIQK"
     gene            29225..29896
                     /locus_tag="JN078_001267"
     CDS             29225..29896
                     /locus_tag="JN078_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016245363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SOS response-associated peptidase"
                     /protein_id="HAY9040531.1"
                     /translation="MCGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKV
                     LLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADG
                     WFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFEHGDEAEGFLIVTAAADQGLVDIH
                     DRRPLVLSPEAAQEWMRQEIGGKEASEIATNGCVPANQFTWHPVSRAVGNVKNQGAEL
                     IQPVC"
     gene            complement(29936..>30293)
                     /locus_tag="JN078_001268"
     CDS             complement(29936..>30293)
                     /locus_tag="JN078_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001458895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY9040532.1"
                     /translation="PGRNVRAKSGLNRSILDQGWYEMRRQLEYKQLWRGGQVFAVPPA
                     CTSQRCACCGHTAKENRLSQSKFRCQVCGYTANADVNGARNILAAGHAVLACGEMVQS
                     GRPLKQEPTEMIQATA"
BASE COUNT         7522 a         7798 c         7259 g         7714 t
ORIGIN      
        1 taacgaattt taccatgatg ctgcggatat ttttccagca acgcttcata ggcgagaaaa
       61 cgctctggca aacctttgga ataatccagc cgttcgacag aaaagatatt ttgtacgttt
      121 ttcagttccg ctttaagttg cgccagtttt ggcggcagtg gcccggcagc ctgtttggct
      181 atttctttcg gttcaatgcc gatcgggtag acttctgttc gaaatgcttt gccccaggct
      241 gtatggcttt ttgcgctacg tgtcgtgacg cgggtcaggt tagaaagaca atccaggaac
      301 gccagacgat cgttttctgt ctggaaaccc agcaaatcat aatcacaaag ctgttcaagc
      361 aaggtgtcat atgtcggcag cgcgttgaag atttccggtg tcgggaaagg aatatgcaga
      421 aagaaaccaa tgcgattatt caccccacgt ttgcgtaatt catgcgcaaa gggcaacagg
      481 tgataatcgt ggatccagat aatgtcatcg tcttgcaaca gcggcagtaa tttatctgcc
      541 agcaacgcat ttacgcgtag atagccgtcc caggcaggac gctgaaattg catcagatcg
      601 agccgataat gaaaagcggg ccagagaacg gcattggaga attggttgta gtattcgtca
      661 aggtcctgtt cgctgaggtt aaaagaggcc cacgtaatgt tacctttttt agcggctgat
      721 cctcattccc tgtttcacca ctccagccaa accacagtcc gcctgtggct ttcagtgccc
      781 ccagtatgcc aacggcaagg ccaccggcac tggcggcgtg ctcgtctggt ggtgcaatcc
      841 ggttagatac tacgactaaa cgactcatag tcatcactcc tgttattttc tcttttttgt
      901 tgtaatgcgg tggttatcat ttcaagcctg ctccagacat ccggcacacc cgccagtcgc
      961 catgatgcct gagttgcacc tgtgccaatt tttactgaca ttccgcccag tcggttaacg
     1021 actgcgaagc cagattcatc ggttaaatca tcgcccagaa atacgggcgt tcgcccgata
     1081 aagggagctt cctgcataaa agctgcaatt gcctcacctt tactggtacc tctcggtttg
     1141 atctcgacaa cacactttcc ctgctgtaac gccatttgtg gccagatctg agtaatacgt
     1201 tacgctaatg tcattaatgc gtcttcatgc tgcggagcct gacgataatg cagcgcaaaa
     1261 gccatccctt tcgcctccag ctccgcgccg ggatactgag cgataactgt atgcagttgc
     1321 acgctaatat cacgcgcaat cgcatccggc agatgaacga tatgcgtttt accattgatg
     1381 tcacggcgct ccgccccatg cacgcccgct aacgggaagc gataaggttt tgccagtgcg
     1441 tcaagctcca ccattgagcg ccctgatatc aatgccaatg caccatcact tgcggttgcc
     1501 agtagctgta gtccttgcag aatattgtca ggcacgacga cctgatcggg atgcggtttg
     1561 atttccgcca gcgttccatc gagatcaaaa aaccaggcat atttcgcgga tagttcaggg
     1621 gtttcggtta acggttctgt cacccggttc tcctacttct cttttcttat tgttttgcgc
     1681 agaacgcgct ttacagacat gtaagtatag acagtgtgac gggggtcgcc atttgcaacg
     1741 aagaacagcc aaccgttatg gcggttggct gtggtgggaa aaaacgctaa attgttgcag
     1801 aaaaaagcat cagacagtgc gtttcgcttt ttgcttgtaa cggtcgaaga tcaccgctgc
     1861 cagcaggatt aagccgcgaa ccacgtactg cgcgaaagga gaaatattaa gcaggttcat
     1921 ggcgttttcc acggtgccta aaattaagat acccgccacc acatatgaga tttttccgat
     1981 gcctcctttc agagaaacgc cacctaaaac gcaggcggag ataacaatca gctcgtaacc
     2041 aatcgacgtc attggctgcc cactggtcat acgtgaagcc agaataattc cggctatcgc
     2101 agataccagg ccagagagaa caaagataat aattttggtg cgaacaaccg gtacacccgc
     2161 cagacgcgca gcctcttcgt tcccgccaat cgccagggtg ttacgaccaa aggtggtttt
     2221 attcagcaac aaaccaaaga taatcagaca cgcgacggtg agccagattg gcgcaggcag
     2281 accgaaccag ttagcgtaac caagggcaaa gaagctttca tcttcgatac cgaccgcttt
     2341 accgtctgaa atgatgtacg ccagacctcg aacaatctgc atcgttgcca gtgttgtgat
     2401 cagagcattt attttcagtt tggcgataac aaagccattg accaggccac agagaatgcc
     2461 aagcagcaac cccgctgcca cgccaatcca caggctttca gtcaggttga taaccaccgc
     2521 cgtggtgaca cccgcacagg caattacgga ggcgacagaa aggtcaaagt caccggaagc
     2581 aaggcagaac aacatgccac acgccaccat ccccgacatg gaaattgcca ggcccaaccc
     2641 tttcatatta atgaaggtgg caaaatttgg gacaaaaatg gcacaggcga taaagagcac
     2701 cgcaaacacc accagcatgc cgtactgatc ccagatacgc ccgaagctga atgacgactt
     2761 aggtgcgcca gaacccgatg tagaaacaga agacatcata ctctccttac tcaggcaact
     2821 gcctggctga ctttaggcat cgcaaggctc agtgcctgac gctcatctgc ctgctcgtgt
     2881 aacaattcac cggcgatttc accttcccgc atcaccacaa tccggtcggc aacgccgagg
     2941 acttcaggta agtcgctgga ggcaaacagc accgccacac cctgcgccgc cagcgcataa
     3001 attacgttat atatttcgtg cttagcacca acatcaatgc cgcgcgtagg ttcatccagc
     3061 aaaatgacct tcatctcttc cgataaccag cggcccagaa tggctttttg ctgatttccg
     3121 cctgagagat tcatgatcag ttgctcagcg cccggcgttt tgatgttgag cgaacgaatg
     3181 tgctgatcgg cattgttttc ttcccaaccg ttgttgatta cacaaccgcc gagcacatgt
     3241 ttgcgtctgg cactgatgtt gatattgtcg cgaacggagt gcacgggaat aatgccttcc
     3301 gctttgcgat cttccgggca gagcatcatg cctgcggcaa tggcgtggct cggtttacga
     3361 atatcgatcg gctgttggtc gatataaacc tgaccggcgg tgatttgcgt cccgccaaac
     3421 aagcctttca ttaattcgct acgccccgcc cctaccagac caaacagccc aacaatttca
     3481 ccactgcgaa ccgccagact tattggcgta cgcacgcctg gtgctttcac agcatcaaga
     3541 cgcaggcgct cctcgccata actacgaggt tgccagccgt agatatcgcc aatgtcgcgc
     3601 ccgaccatcg cctgcaccag cgcgtcgtgg tcaacctgct gcatatcggt aaaggttttg
     3661 acataacgtc catctttaaa gacagtgatg gcatcgctga gggcaaatat ttcttccata
     3721 cggtgagaaa cgtataagat cacccgcccc tcttttcgca gttcacgaat aacgcggaaa
     3781 agattgtcga tttcgcgggc agaaagggag ctggttggct catcaaaggc gataatttta
     3841 gcgttacgcg ccagcgcctt ggcgatttca accatctgcc actgaccaat ggagagatat
     3901 ttcagcggcg tgtccgggtc aatatccata ccaagatgtt taagttgtaa acccgcctca
     3961 taattcagca atgagcgatt cacaatgccg cctttatgcg gcagctggcc gagatagatg
     4021 ttttccgcga cggtcatttc cggcacgaga tgcagttcct ggtaaataat cgccacaccc
     4081 gcgttaagtg ctgcggtcgt gtcggaaaag gacatttcct gcccattaat cactacagaa
     4141 cccgtggttg gcgcatagtt gccgctgagg atttttaaga gagttgattt tcctgcgcca
     4201 ttttcaccca tcaacgcatg aacctgaccg gcatagcagt caaaactaat atccgtcagc
     4261 gccttaacgc cgggaaacgt tttaccgatg ccgcgaaatg agagatacgg ggtagactgt
     4321 tgcataacgt ctccgtgaat cactggtcgt tcacaccccc tctgcatcat gcagagggga
     4381 atttttccgg caaattactt accgcctaaa ccttttttct ccagttcttc tttaaagttg
     4441 tcacgcgtga tcagcaccac gtcggtaact tcggtaaatt ttggcggttc aacgtctttt
     4501 gctacccagt tgtaaagcat ttcgctggat ttatagccat gtacgtccgg gcttggcagc
     4561 agggaaccgt agaagccggt tgcctgtact ttagacagtt cgctcaccgc atccacaccg
     4621 ttaatgccaa tgccgataat atcggcagct ttaaagccct gaccttccgt cgcgcgtacg
     4681 ccgcccagca cggtgctgtc gttcataccg acgatcagcc aatgtttaac ttcaggatgt
     4741 tgaaccagca ttgagttggc agcgtcaaat gcccccggga tgtcgttaga tttggtaggt
     4801 acctgataaa tttgtttttc cgggaatccg gccgctttca gcgcatccat agatcccgta
     4861 gtacggcggc gggcagtatc cagttcgttg gcggtaatca ccatcaccgc gctttctttg
     4921 acatcccagc cacgtttctg catctcttta tacagttcct gaccctgacg ttcgccaatt
     4981 ttagtcgcgc catcatcacc agcggaacgg tatccattgg cttacctttg gcgttaacaa
     5041 actgatcatc cacggcaatg actttcatat cgtagccacg cgctttcgcg acgatggcag
     5101 agccgagttt ggggtccgga gtacaaataa cgaaaccttt tgcgccactg gcagccaggc
     5161 tgtcgatcgc gttcaatgtt ttttcgccat ccggcacggc aatcttaata acctcaaacc
     5221 ctaaatcctt cccggcttta tcggcaaact tccattcggt ctggaagcac ggctcttccg
     5281 gttgcttcac cagaaaaccg agcttcaggt tctccgccat agcggattgt gacataacgg
     5341 ctgccagacc aatggctgcc agggctttag taaatttgtg catggttctc tccagcttta
     5401 gtgtcgtttt gtgtagggca aaaacgaatg acattcgtta aattaatcgg aaaacaaagc
     5461 attacctttt aactaaaaga taagtgaccg tgttgacata gttttagcga gaaattaatt
     5521 ctccatagga gagcaatatc acatcgcaga attacagtga gaacgtgcat aaatttagcg
     5581 ggaaaagaca taagggaaag ccaatttgtc agacaaattg tcgaatgcac agcagattaa
     5641 tccataagat tagcttggaa atccttgttg tctttggtac ccatgcggga tgtcttcttt
     5701 ttaaccagtc aataggccgc attacctggc gttgagtttt tgaaatggtg taataaccgc
     5761 aactcaaaga tgtggaaaat gcacgtcatt catttcgcca ttaattatca ctgtgctcat
     5821 taattaacag aacacgtata atgagagcca tctcgcaaaa atgaaaaaac gttttataaa
     5881 atcatcattt catcaatgaa atgtaaaaat atataaactt gatgatttaa gcattttctt
     5941 atacccgttc agacgttatt cttatttcag atcatcgtca gaattgactc cacgatcaca
     6001 tttcggaccg gcagaaagga attattctgc aaacagtaat tatggtgttt tgatttatct
     6061 tgcacctctc cacttctgga tataaggata ttaggtatgg caaccgctgg aatgcttctc
     6121 aaactcaact ctcaaatgaa ccgcgagttt tacgcatcca atctctacct tcacctgagt
     6181 aactggtgtt ctgaacagag tctgaacggc accgccactt tccttcgcgc ccaggcacag
     6241 agtaatgtga cccaaatgat gcgcatgttt aactttatga agagtgtcgg cgctaccccc
     6301 atcgttaaag ccattgatgt tcccggtgaa aaactgaact ctctggaaga actgttccaa
     6361 aaaacgatgg aagaatacga gcaacgttct agtacgttgg cacagttagc cgatgaagcg
     6421 aaagaactga atgatgattc aaccgtcaat ttcctgcgcg atctggaaaa agaacagcag
     6481 catgatggtc tgttgctgca aaccattctt gatgaagtgc gcagtgcgaa acttgctggt
     6541 atgtgcccag tgcagaccga ccaacatgtt ctgaatgtcg tgtcgcatca gctgcattga
     6601 tcatacatcg gcgctaatgc attgcgccga tgaagttttt gagaaaccgc tgcctcatct
     6661 ttttgaagca gcggtttttt aatgggattc gccttgtggg gtaaacttga gttcaatcag
     6721 cgcgatggct ttttggattg cccgcatggt gaccgggtct gcggcggcgg gatggttact
     6781 aaagtcgata ttcttcagct gactggacat tttttcacga acttcaacgg gcgcgattac
     6841 atcgagaaca tccagaattt gtttgataac caactggcaa gcaaccacat cagaaaccag
     6901 ttcctgatcg gcattcagcg gctgggacat cgtaaactcc tgatagcatt ttgaaagccg
     6961 ttatagtagc ggcttcacat cttcagcgat agtcacatcc accgtcatca ggacacaaaa
     7021 aaacctgccg gagcaggttt tttgttatcg gaacatattg cctggcggta cgtctttgaa
     7081 cgtcttgcaa tagttattga acatactttt caggattttg cgcagtttca tcgcggcact
     7141 ccgaccattt gttatacatg tgttattttc tttgtgctta taatatgaca accatcacaa
     7201 aaatcaatct ttatgtgatg caaatcacac aaataccccc ttaatgttat aaaaatgata
     7261 atcaaaaaac agccccccca tttctgacac ctacagatgg caagaaatag cgcctgccag
     7321 gcgtcttttc cggtcattgt cgcagcgctg taacgcgtaa aatagtgctt tcttttactc
     7381 ttctggctgg accatgagac ttctgattct gactctttca ttaataacgc tggcggggtg
     7441 tacggttact cgccaggccc atgtgagcga agttgacgcg gcaacaggta ttgtacggtt
     7501 ggtttatgac caggcttttt tgcagcatgc ccataccgat cgttatgtca gtcgcgggat
     7561 cgccgatcgc gcatgccagc aggaaggcta tacccacgcg atcccctttg gtcagccagt
     7621 aggcaactgt agcctttttg cgggttcctt atgtttgaat acggaattca ctttgtcata
     7681 tcagtgccat cattccgcct tccctgtctt tctctaaata ttttaatcag cgaggggatc
     7741 ttcgctgatt aaaaaaatag cggtaatgcg ttttattccc attcgtattt ttaataattg
     7801 aagtttatat tttacctttt gcaaataata aaataacaaa ttatagtgac gccacagcaa
     7861 caaatataac ctttgtggag cactatcatg ctgaaaccag aaatgattga aaaacttaat
     7921 gagcagatga acctggaact gtactcttca ctgctttatc agcaaatgag cgcctggtgc
     7981 agctatcata ccttcgaagg tgctgccgcg ttcctgcgcc gtcacgccca agaagagatg
     8041 acgcatatgc agcatctgtt tgattacctg actgataccg gcaatttacc gcgtattaat
     8101 accgttgaat ctccgtttgc tgaatattcc tcacttgatg aattattcca ggaaacctat
     8161 aaacacgaac aattaatcac ccagaaaatt aacgaactgg ctcatgctgc aatgaccaat
     8221 caggactacc caacatttaa tttcctgcaa tggtatgttt ctgagcagca tgaagaagag
     8281 aaactgttca aatcgattat tgataaatta agcctggcag gcaaaagcgg cgaaggtctg
     8341 tattttatcg acaaagaact ctctaccctc gacacacaaa actaatactc tccggcggca
     8401 ggtttactgc cgccgtttca aatcagtgac ggcaaatctt actctgatcg gtcgaaaaac
     8461 cgtctttcga aggtataaat ttgccttttg ctgccagaaa cgctaccagc tctcccgctg
     8521 tcatcccttc tgccgagcag gtgtgaaaac gtgcctgttc accaaaacgc gctttaattg
     8581 ctgcttccag actggcatgc gtatattgct cgcctgattc aatcatcata tttaacactt
     8641 catgaccgtg aatagagtcc atcgttcctc ctcaaaaaaa gcctagcgta gcgattgccg
     8701 cttatgaaga ctttgcgcca gagcagaact gaatgctttt tattgtacat ttatatttac
     8761 accatatgta acgtcggttt gacgaagcag ccgttatgcc ttaacctgcg ccgcagatat
     8821 cactcataaa gatcgtcagg acagaagaaa gcgtgaaaaa cagaactctg ggaagtgttt
     8881 ttatcgtggc gggaaccaca attggcgcag gcatgctggc aatgccgctg gctgcggcag
     8941 gtgttggttt tagcgtcacg ttaatcttgt tgattgggct ttgggcgttg atgtgctaca
     9001 cggcgctatt actgctggag gtgtaccagc atgttccggc agataccggt ctgggcacgc
     9061 tggcaaaacg ctatctggga cgctacggtc aatggctgac gggcttcagt atgatgttct
     9121 taatgtatgc tctgactgcg gcatacatca gcggtgccgg tgaattgttg gcctccagca
     9181 tcagcgactg gacaggtatt tcaatgtcgg caaccgctgg cgtgctgttg ttcacttttg
     9241 ttgccggtgg cgtggtttgt gttggaacat cgctggtcga tttatttaac cgttttctgt
     9301 tcagcgccaa aattattttt ctggtggtga tgctggtatt gctgctaccg catattcaca
     9361 aagtgaatct tttaaccctg ccgttgcaac aggggctggc tctgtcagca atcccggtga
     9421 tttttacctc atttggtttt cacggtagcg tgccgagtat tgtcagctat atggatggca
     9481 acgttcgtaa gctacgcagg gtgtttataa ccggtagtgc gatccccctg gtggcatata
     9541 ttttctggca ggtggcaacg cttggcagca ttgattcaac aacctttatg ggattgcagg
     9601 ctaatcatgc tggattaaac gggctgttac aggcgttacg cgaaatggtg gcctctccgc
     9661 atgttgagct ggcagtgcat ttatttgctg atttagccct cgccacgtca tttctcggcg
     9721 ttgcgttagg cttatttgat tatctggctg atttatttca gcgttcaaat accgttggtg
     9781 gacggttgca aactggtgca attacctttc tgccgccgtt ggcgtttgca ctgttttatc
     9841 cacgaggatt tgtgatggcg ctgggttacg ccggtgtggc gctggcggta ctggcattga
     9901 ttatcccttc gctgttgacc tggcaaagca gaaagcacaa tcctcaggcg ggttaccggg
     9961 tcaaaggtgg tcgtccggcg ctggtggtgg tgtttctctg tggtattgct gtgattggcg
    10021 tgcaattttt gattgcggca gggttgttac cagaagtgag gtgatcagat agcctcaaat
    10081 tccttattgg gtgccagaat taacgctgac acccaatttg gcctcttaat gcaggcagca
    10141 ctgcttaaat ttcttaccac taccgcacgg gcaaggatcg ttacgccccg gtttctcttc
    10201 tgctttgatc ggttgctgaa cagctttttc ctgcggatgc gccatccagt acgcatgtag
    10261 atcaagcgcc gccagtcgaa tggcatctac gctctcttca aacgcttctg gcgacatctt
    10321 ttctacccgc tcgaagtttt cctcagtacc gtgcagcgca atcgcctcca gcgctggttt
    10381 taacgaatcg ggcaacgttg accagtcaga aagtgccacg ccccgcatat agccaaagca
    10441 ccactcctca acaatcgtca gctcgctgcc atcaacttct cgcaagccga ataacggctc
    10501 aaactgctcc gggaattcgt tcagacgctc tgcggtatcg gccatatgtt gaaaagccag
    10561 gttcataaag cgcgtcatct ctttctctga cgcccagcgc ggcacatagt cagccccacc
    10621 ccacacggca accagccact gttccggttc aatctcttgc ggagaactca acaccgccgt
    10681 caataaatcg tccagctccg ccacatcaag gatggcgtgg ttagtgttgt atttggtcag
    10741 aatatcgtcc agccattcca actcactttc gtttaacggt cccgttttca tacgcttttc
    10801 cttgtggatc tcaactcgcc agcacctatc ttacatgccg gtccgtatca gagatacttt
    10861 ttgagtggct ttgccggtga ttaaaaatta aggagggtgt aacgacaagt tgcaggcaca
    10921 aaaaaaccac ccgaaggtgg tttcacgaca ctgcttattg ctttgatttt attcttatct
    10981 ttcccatggt acccggagcg ggacttgaac ccgcacagcg cgaacgccga gggattttaa
    11041 atcccttgtg tctaccgatt ccaccatccg ggctcgggaa gaaagtggag gcgcgttccg
    11101 gagtcgaacc ggactagacg gatttgcaat ccgctacata accgctttgt taacgcgcca
    11161 aattcttcag gcctttcagc cagacatccg cttgacgccg atgtctttta aactggagcg
    11221 ggaaacgaga ctcgaactcg cgaccccgac cttggcaagg tcgtgctcta ccaactgagc
    11281 tattcccgca ttcattaagc aatcagttaa tcacttgatt ttattatcgt ctggcaatca
    11341 gtgccgccgt tcgatgcgtt gcattctact tacctggcgc gatgagtcaa cgatattttt
    11401 caccactttt gatcgtttgc tgaaaattac gccgaaacga tcactgatca agcaaatctg
    11461 cacgcgcagc gctcaaatat tgcaacattg accacagagt cagcaccgca gccacaaaga
    11521 aaagtgcaat accggcgtac tcaacccaaa tgttcggacg ccacagcagc caggccaacg
    11581 ccaccatctg ggcagtggtt ttcactttcc caatccagga gacagccacg ctactgcgtt
    11641 tacccaactc cgccatccat tcgcgtagcg cagaaataat aatttcacgg gcgatcatcg
    11701 ttgccgccgg tagggtcacc caccagctgt gataatgctc ggttaccagc accatggcga
    11761 tagccacgag aactttatct gctacagggt caaggaaagc accaaaccgg gtactctggt
    11821 tccagcggcg tgccagaaaa ccatcgaacc agtcagtcac cgccgcgacg cagaaaatga
    11881 gcgcggcggc aaacggcgac caggtgacag gcagataaaa gaccaataca aagaatggga
    11941 taaggatgac acggaacagt gtaagcaacg tagggatatt aaattgcata atgacgggta
    12001 actatctgtt gtcagtaaga ttacccctat gttgctacag agacatcaat gtttcaacga
    12061 ccagaagatc ttttctgcca gaccttgcga aatacccggc acttttgcaa tttcctcgac
    12121 gctggcgtta cgtaaacctt gcaaaccgcc catatatttc aacaacattt gccgacgttt
    12181 tggcccgacg ccttcaatgg tttccaggga actggtattt ttgaccttcg cccgtttttt
    12241 acggtgcccg ccaatcgcgt gatcatgtga ttcatcgcga atatgctgga taacatgcag
    12301 cgcgggtgaa tctggcggca aactaaatcc ctcatcttcc ggctcaaaga acagcgtttc
    12361 cagtccagcc ttacgatctg ctcctttggc aacgccaagt agcagcggat gatttttatc
    12421 ccatgagaca tccagttcgg cgaagacatt tttcgcctgc gcaagctggc ctttgccgcc
    12481 gtcgataagg atcacatccg ggatcttact gtcgtcaatg gctttaccat aacgccgacg
    12541 cagcacctga ttcatcgccg cataatcatc gcccggcgtg atgcctgtaa tgttatagcg
    12601 ccgatactcc gcacgcagcg ggccgttagc atcaaacacc acacaggaag cgacggtttg
    12661 ttcgcccatg gtatggctga tgtcaaagca ctccatccgc ttcacttccg gcaatttcaa
    12721 cacgctggca agcgcggtca gtcgctggtg aacggtagat tgctgcgaaa gtttgctggt
    12781 taaggccgtc gccgcattgg tgcgcgcgag tttcagataa cgcgccctat cgccgcgagg
    12841 tttggtttga acattaatct tgcgtcccgc cagttctgaa agggaatcgg cgagcagcgt
    12901 tttatcgcta agattaaaat cgagcaggat ctcacccggt aaggtgcgca tctggctgcc
    12961 ttgtaaatag aactgaccta cgaaggtttc taccacctcg ctcagttccg taccgccagg
    13021 cactttcggg aaatagctgc ggctgccgag cactttgccc tgacgaatga acaatacgtg
    13081 gacacaagcc atgcccgcat cgaacgccac accaataacg tcaaggtcgt cgccggtatt
    13141 ggaaacaaac tgtttttcgg tgacgcgtcg caccgcctga atttggtcgc gaatacgtgc
    13201 cgcttcttca aactccagat tctgactggc agtttccata cggctaatga gttgcgtaag
    13261 cacctgatca tctttgccag acaaaaacag gcgcacatac tcgacctgct gagcgtattc
    13321 ttcttcactc accagtcctt caacgcacgg tcccagacag cgccctatct gatattgcag
    13381 acacggacgc gagcgattgc gataaacact attttcgcac tggcgaatgg ggaaaatctt
    13441 ttgcagtagc gccagagttt cacgtacggc atagccattc gggaacgggc cgaaatattc
    13501 acctttggca tgcttcgcac cacgatgcat cgccagacgc gggtgggtat cgccactcag
    13561 gaagataaaa ggataagatt tatcatcgcg tagcaaaacg ttgtaacgcg gctgatagag
    13621 tttgatgtag ttgtgttcca gcaacagcgc ttcggtttct gtatgagtaa ccgttacatc
    13681 aatttgctga atctgggcga ccagcgcttc ggttttgcgc gaagcgaggt tgctacggaa
    13741 atagctggaa agccgttttt tcaggtcttt cgctttgccg acatagataa ccgtaccacc
    13801 agcatcgtac atgcgataaa cgcctggctg gctggttacg gtttttaaaa acgcttttgc
    13861 gtcaaactga tcactcactg acttgataat gtctccgcat tacacagacc atggcgaatt
    13921 gccaggtgag tcagctcaac atcgccatga atgtttagtt tactgaacat acgatagcgg
    13981 tagctgttca ccgttttcgg actgagattg agctgttctg agatctcatt gaccttctgg
    14041 cccttggtga tcatcagcat aatctgcaat tcacgttcag acaaactggc aaatgggctt
    14101 tctgtttttt ctggttcgat ctggcttaac gccatttgtt gagcgatgtc agaagcaatg
    14161 taacgctgcc ctgaatagac agaacgaatc gcactcacga cttcctgcgg agccgcgcct
    14221 ttgctgaggt agcccgcagc accggcctgc atgactttcg ctggtaaagg gttttctgta
    14281 tgaacggtaa gcatgatgat tttgacatca gctgtggaac gcgcgatttt acgcgtcgcc
    14341 tcaagaccgc caatgcccgg catactcatg tccattagca ccacgtcaac ggcatttgtc
    14401 cggcaccact taacggcgtc ttcaccgcac gatgcctcac cgacgacttt tatacccttt
    14461 atatcttcca gaatgcgtcg tatccctgcg cgcaccagtt cgtggtcatc aacaagtaga
    14521 acgttgatca aagaaatatc tccagaaata gggataacgc tactgatagt tagtcattcg
    14581 tatattagcg gtttttattg caactttgaa acgttaaaaa tggtgggtat tcgatttttc
    14641 tctcgttttt gtcaattcga ttgtccacag ttatggtcac gcccgtcacc aacggcttac
    14701 cggatcgttt cacagtaagc cctacgatga aatgtgacaa aaattgactt tattcagcaa
    14761 aaatgaaaat cagcccgctg aatatgtaac attaattaac ccgaacaata cgggcaaaaa
    14821 cattcatgat aaaaatattt attggtcatt atattaacgt attttatagc actgccgata
    14881 tcacgctcaa aaaacaacca ctgctatttt tagcaaagct tatggtatac tccgccgcct
    14941 taacattttt caccgcaaat tttcattgca acatgacgag gaaaataaat gagtacgcct
    15001 gatttttcta ctgccgagaa taatcaagaa ctggcaaatg aagtctcctg cctgaaagcg
    15061 atgctgacgc tgatgctgca ggcgatggga caagctgacg cgggccgcgt gatgttaaag
    15121 atggaaaaac agcttgcgct gatcgaagac gaaacccagg ctgcagtatt ttccaaaacg
    15181 gttaagcaaa ttaaacaagc ctaccgtcag taatataaaa ccggctgaga gcgtgccttt
    15241 cagccggttt ttgcatctgg cacgcagaaa gaaaagcgat caaattaagc cagtagcggc
    15301 cgcgtaacag gccacctggg tcttatttgg tgcattgatt tttttctgca tgtttttctg
    15361 atggaaattg accgtattct cagagattga caaaatcatc gctatctctg ctgatgtctt
    15421 cccttccgcc gtccatttca gaatttcttt ttcgcgcttg ctgaaattca tctctggcgt
    15481 catcactatt tcatcattta aacgcatcag agccatcaga ctttcgcgca ccagtaactg
    15541 catttttaat tgcagttcat cactaagaat gggtatttcg cgcgtgctgc aacgggaaaa
    15601 ggacaaaaag cccagcgccc gatttggcag cattaaatac tgagtgacac cgcggcgtaa
    15661 accatgtgcg tgcgcggctt cccataatgg ctgtgcttcg ctgaataagt catcattcca
    15721 cattaaatgg ccctgactaa agttttcagg gttcagcaca ggatcaattg cgagaaaatt
    15781 agcacaggat caattgcgag aaaatttttt gcctgataat aactaaccca cgactcaggg
    15841 taattggtgt agaaagccac tttaggtcgc gtgaatggta ccgggtggcg aacacataac
    15901 gaatagtaat cgtactccag ctgctgagcc tgaagctcta tttcatggta gacctcttct
    15961 gcgacctcca tcctctgaaa acgcaacagc atcgtgcgac gccaactgaa aaaatccgta
    16021 tcctgcatag taaaccgcaa cgcccctgag agtgagtatc atttataatg ataattcaaa
    16081 ctatcacata aataagattt atatataatt tatattattc aggcaatgaa ttacttttgc
    16141 aagccatcgc attctcttat gttattaatg agttatgctg atttgttaag cagttttatc
    16201 acgcttgaaa tggcgtcccg ccccgacagg tgaatcgtcg gggctgattt tttcttatta
    16261 ttgcagcaga aacttctcga ggaactgtcg ggtgcgaggc tgctggggat cggcaaataa
    16321 cgcttttgct gccccctgct cgactatccg ccccaggtcc ataaaaatcg cccggtccgc
    16381 aacatcccgg gcaaagctca tttcgtgcgt cacaatcacc atcgtgcgct tttcctgcgc
    16441 cagctggcgg attgtgttca ggacttcgcc caccagctct ggatccagcg ctgacgttgg
    16501 ctcgtcaaac aaaatcacct caggacgcat tgccagcgca cgcgcaatcg ctacacgctg
    16561 ctgttgaccg ccagacaaac gacgtggata gctggtttct ttaccggcca gcccaacttt
    16621 cgccagcagc tcgcgagcgc gcgccgtggc ctcttctttc ggttcgcctt tgacgatcac
    16681 cggcccttca ataatgtttt ccagcaccgt acgatgcgga aacaaattaa agttctggaa
    16741 gacaaacccg acgtgctgac gcaactggcg aatcagcgat ttttgctgac ttaatgaacg
    16801 tgcagtatca atagtgatat cgccaacggt gatcgttccc gcttccggtt gttccagcag
    16861 atttatgctg cgtagcaacg tggttttgcc ggaaccactc ggaccgataa ttgccaccac
    16921 ttcgccaggc tttacctcga ggtcgatacc gtgcagcacc gtctgacctt ggaatttttt
    16981 caccaggttc ttaacttcaa tggcactcat ttgggttctc tctcctggcg attaagttga
    17041 ttctcaaaat ggttctgcaa cgtcgataac acagtcgcca tgatccagta gatgagcgaa
    17101 gccgccaggt acatggtgaa cacctccagc gtgcgcgagg taatcaactg cgcctgacgg
    17161 aacagctccg gcacctggat tgtcgcggcc agcgacgtat cttttaccag actgataaag
    17221 ctgttcgaca gcggcggcaa cgccacccgc gccgcctgtg gcaaaatcgc gcgacgcatg
    17281 gtctgccacg gcgtcatacc aatactggca gcggcttccc actgaccttt atcaatagaa
    17341 gaaatggcgg cgcgcagcgt ttcggcggca taggcggcag tgttcagcga cagaccaatc
    17401 attgctgaca gaatgggatc taattcgata ccaaactgcg gcaggccgta atagatcata
    17461 aacagttgtg cgatgagcgg cgtaccacga aaaatagaga tataaaaacg cgccagccag
    17521 cgcacgggcc agattggcga caggcgcatc agcgcgagaa taaacccgag tagtaagcca
    17581 aaaaacatgc cgccgatact gagttgcagg gtatacccag cccctttcaa caggaacggc
    17641 aaggaatcaa taaccagttg tatactttct tgcatgagcg ttcccggagc taaacgtggg
    17701 gatgataggc gaacagcgca ggcgcgccgc cggtatgaat aaacagaatc ggcccttcat
    17761 ctttgaagcg tttctgactg ataccgtcaa tcagccccgc catcgctttt ccggtataca
    17821 caggatcaag cagaatgcct tccagacgcg ccagcaattt cactgcttcc atgccttcgt
    17881 cgttcggcac gccgtagcca ggtgcaaaat agtcatccca gagtaaaatt tccgctgatg
    17941 cggtcagctc cagttctttc gcaatcgcct gttgtaggtt aaccactttc ggcaattgat
    18001 cggcaacgga acgcgacacg gtcacgccaa tcagttcgct ttcaggcatc aggtgttcca
    18061 gcccaacagc caatccggcg tgagttccgg cactgcccga tgcgaccacc accgacgaaa
    18121 tattaaccgc cccttcacac tgttgcgcga tttccagcgc actctccaca taacccagcg
    18181 cgcccagagc attagaaccg ccaaccggaa tgacatacgg gcgaaagcct tgtgcttcga
    18241 ctcgcgtcgc cagctcttcc agttgggcat tgggatcggt cagtgtgtcg cacatttcaa
    18301 tctgggtatt gaacagattc agcaacaaac gattgccgtt ggttaaatag ttttctgcgg
    18361 ttgtgccaat aggattttcc agcagcgcca cgcagtgcag gccgagtttc gccgcaactg
    18421 cggcagtctg ccgcacatgg ttagactgga tcgcgccggc agtaatcagc gtatcggcac
    18481 cttcgcgcag ggcatctgcc gcgagaaatt ccagcttacg taatttattg ccgcccattg
    18541 ccatgggtgt gacgtcatcc cgtttgatga aaatttcccg tccaagataa tcagaaaagc
    18601 gcggcagata ttcgagcggc gttggcgcgc cgataaactc cagccgtgga aaacgggtta
    18661 aattatgcag tggcataata gcctccgatg tgtgttgttg tgattttctt attatgcacg
    18721 ctgaaaacgc gtaaataaaa aaggcgctag tgaaagcgcc cttttttgtc attatgctga
    18781 ttatttggtc acatcagcac caaaccattt ttcggaaagg gcttgcagag tgccatcttt
    18841 ttgcatttcc gcaattgcat cgttcactgc tttcagcagg tcttcatttc ctttacgcag
    18901 cgccacgcca gactcctgac gggagaatgc ttcaccggtt actgccagcg tatcgttggt
    18961 tttcttcacc agatccagcg ccgccagacg gtcaacgagg atcgcatcga tacggcctac
    19021 gcgcagatcc tgatatttgg tcgggtcatc atcataggta cgcacatcga cgccctgaac
    19081 attctgccgc agccactctt catagttggt gcccagaccg acacccactt ttttgccttt
    19141 cagatcagca gccgttttaa tggtgccttc gttacctttt ttcaccagcg cctgaatacc
    19201 agaaatggtg tacggggtag agaaatcgta ttttttcttg cgctcatcag aaatggtgac
    19261 ctgattaatc accacatcaa tacgtttaga gtccagcgac gctagcatac cgtcccattt
    19321 ggtcggtttt agtgacgcct caacgccaag atgttttgcc agctgttggg caaattccac
    19381 ttcaaaaccg gttaatttgc cgtcatcccc ctgaaaactg aacggcggat aagttccttc
    19441 cagccctacc agtagcgtac cgcgctcttt gactttatta agcagacctt catctgcaaa
    19501 acttttaacg ctcatgcccg caaccagcgc cacggccatc acacccatca atgcctgacg
    19561 tcccagatgt gctaatttca tattcacccc gaatgttgtt atgtctgttt gcagtgtaga
    19621 gccattgttt gtaaacacaa aaacaactcc gctacatctt attcttattt aatatatatc
    19681 agaagcaggc aggctggagg atttctgcac aagtccggta cacgtttgac gctgatagtg
    19741 ttgatacttc cgtaatgcga tgcggtaatt gttggtgctg gtggtgggca gccacggggc
    19801 gaggatttca tcaaggaaac cgtcctgcag ctgatcgagg gaaatatttt gctcatgtag
    19861 atgattcccc aaacggcgca aacgaacgac atattcacgc accgtacctg ggctcatttc
    19921 agtttgctca aaaagaaatt gcttaaagcc gataatatcg aaaaaatcac tctgcgtttt
    19981 gcaatgtaaa tcaccgcaaa atcggcacaa tgccgcccat gactgttgtt ccacttgcca
    20041 gccattttca tcaagcagcg tgtccaggcg ggaaatctcg attttattca ctattttgcc
    20101 gtcgcgaact aaggtaatgc gatcgagtaa tttacggcaa tgcgcgcaat gggcctggct
    20161 gtgtttaaag tctttaagat agcggcttaa tggccgtctt ttcaggtgct gcaccatcat
    20221 taagaactcc tggtagtcaa agttaaagtg cggcatttac tgacgttata acttacccag
    20281 tttagtgctt aaccgtttaa tggcctggct gtgtaactga ctgacccgcg attccccgac
    20341 ctccagcacc gcgccaatct ctttgagatt cagctcttcc tggtaataga gggttaatac
    20401 cagtttttcg cgctccggca acgtttcgat agcttccatc acccgctggc gcagattact
    20461 gtccagcagt tgttgtagcg ggttttctcg ctgatgatca tcagtaacca gttcgatgct
    20521 atcgccgtgc tcttcgcgcc actcatcgta ggagaaaagc tggctgttat tggtgtcgag
    20581 caacatttgg cgataatcgg caatatcgat ccctaaacgt tccgctacct cagtttccgt
    20641 ggcgttgcgg ccaagttcct gctccagttg ccctattgcc tgtgccactt cacgcgcgtt
    20701 gcgtcgcacg ctgcgcggca cccagtcacg gctgcgaagt tcatccagca tagcgccacg
    20761 gatacgctgc actgcgtaag ttgtaaatgc cgttccttgt agggcgtcat agcgttcgac
    20821 ggcattaagt aacccaatgc cgcccgcctg tagcagatcg tcaagttcca cgctcgcggg
    20881 cagtcgaacc tgcaggcgca atgcttcgtg acgcaccagc gggacataac gctgccacag
    20941 cgagtgttta tccattacac cttcagcggt atagagtgaa ttcacgataa acagccctgc
    21001 gttatatgag ttatcggcat gattatccgt ttctgcaggg tttttaatcg gacgattagt
    21061 gggtgaaatg aggggttatt tgggggttac cggtaaattc catgcagaaa aaaccccgcc
    21121 ggtggcgggg aagcacgttg ctgacaaatt gcgctttatg ttgccggatg cggcgtaaac
    21181 gccttatccg gcctacaaaa atgtgcaaat tcaataaatt gcaattcacc ttgtaggcct
    21241 gataagtgca gcgcatcagg caatttggcg ttgccgtcag tctcagttaa tcaggttacg
    21301 acgattaacc ctgcagcaga gacagaacct actgcggtac ctggttggct tttgccagca
    21361 cggagttacc ggcctgctgg atgatctgcg ctttcgacat gttggacact tcggtcgcat
    21421 agtcggcgtc ctgaatacgg gactgcgctc cagacaggtt ggtagtggtg ttgttcaggt
    21481 tggtgactgc agaatccaga cggttctgaa tagcacccag ggatgaacgg aatttgtcga
    21541 tggagctgat agcttcatcc agggcagcca gaggatcttt ggttgcagtg cctgcactgg
    21601 tggtttcagt ggtcagtttg cctgtagagt taacataagc ctgtgcccca acagtagctg
    21661 caaatttacc agttgcacct gcgccatttg aagctacagt tactgtaccg gtatccttat
    21721 cgacgttgta gttgatagtg taagatgcgg ttgtggtgag ctctttgtct gcatcagtat
    21781 aggtgtcatt cgaattacca gcaccattag tattcgcacc accgaaggac gccgttgcag
    21841 actgaatacc tgtattatac ttaattgtcg caccagtaac tgctgtgtta gccgttgcag
    21901 cactctgcac tgtgctcagt acagtatcag cgcttacagt tttggtgtag gttacgccag
    21961 aagttgccgc tgcaccaaag ttataagttg tgccagacaa ctggatagaa ccagttgtcg
    22021 ctaaggtact accgctagca aacagatcgg acaatttcgc tgaagatgca atgccggcgt
    22081 tgtttgtaga taggttacca gtggcgtcca ggtacgcggc tttaccaccg atggtcacat
    22141 cgccattagc atctacatca aacttcacat caccagtact acgagtataa acacctgatg
    22201 cagtagtgcc agccgctggt ttcagagtat tcgcaaagtt aacaacatcg ccatctgcaa
    22261 ctgttgcttg agtggtgaag ttccctttag ccgcatcata agtatagatc gcagcactcg
    22321 agccagtagt agtaactgta tctccggttt tcaggcgaga cagtgcatcg ctagcgctga
    22381 gtgctgtatt gtttgtggtc acagcataag gacctgttcc cgttgcacca gcagcggtca
    22441 gatcgctgac tgtagcagct ttgttcgcaa tagtgccttt gccattcacg ttaaaaccat
    22501 tcagccccag cgtatctgag tcaattttct tcagatcaat cgtgatagtc tggccgtcat
    22561 tcgcaccaac ctgaattttc attgaaccgt ctttcgccag tacgttcacg ccgttgaact
    22621 gggtctggcc agatacgcgg tcaatttcgt ccagacggga tttgatttcg tcctgaatgg
    22681 agtccagatc cgaatcggag ttagtcccgg tagaagcctg aaccgtcagt tcaagaatac
    22741 gctgtaagtt gttgttgatt tcggacagcg cgccttcagt ggtctgcgca acggagatac
    22801 cgtcgttggc gttacgggcc gcctgagtca ggcctttaat attagaagta aaacggttag
    22861 caatcgcctg acctgcggcg tcatccttcg cgctgttaat acgcaagcca gaagacagac
    22921 gctcgataga actcgacagc gcagactggt tcttgttgat attattttga gtgatcagcg
    22981 agaggctgtt ggtattaatg acttgtgcca tgattcgtta tcctatattg caagtcgttg
    23041 attacgtatt gggtttccac ccgtcggctc aatcgccgtc aaccctgtta tcgtctgtcg
    23101 taaaacaacc tttagaattt ttttcacaaa cagccatttt ttgttagtcg ccgaaatact
    23161 cttttctctg ccccttattc ccgctattaa aaaaaacaat taaacgtaaa ctttgcgcaa
    23221 ttcaggccaa taaccccggt attcgtttta cgtgtcgaaa gataaaagga aatcgcatgg
    23281 caagtatttc atcgctggga gtcgggtcag gtctggattt aagttcaatc cttgatagcc
    23341 tcaccgccgc gcaaaaagcg acgctaaccc ctatttcaaa tcagcaatcg tcgtttaccg
    23401 ctaaacttag cgcctacggt acgctgaaaa gcgcgctgac gactttccag accgccaata
    23461 ctgcattgtc taaagccgat cttttttccg ccaccagcac taccagcagc accaccgcgt
    23521 tcagtgccac cactgcgggt aacgccatcg ccgggaaata caccatcagc gtcacccatc
    23581 tggcgcaggc gcaaaccctg accacgcgca ccaccagaga tgatacgaaa acggcgatcg
    23641 ccaccagcga cagcaaactc accattcaac aaggcggcga caaagatccg attaccattg
    23701 atatcagcgc ggctaactca tcgttaagcg ggatccgtga tgctatcaac aacgcaaaag
    23761 cgggcgtaag tgcgagcatc attaacgtgg gtaacggtga atatcgtctg tcagtcacat
    23821 caaatgacac cggccttgat aatgcgatga cactctcggt cagcggtgat gatgcgctac
    23881 aaagttttat gggctatgac gccagtgcca gcagcaacgg tatggaggtc tcggtcgccg
    23941 ccaagaatgc gcagctgacg gtcaacaacg tcgccattga gaacagcagc aacaccatca
    24001 gcgacgcgct ggaaaacatc accctgaacc tgaacgatgt caccacgggc aaccagacgc
    24061 taaccatcac tcaggacacc tccaaagcgc aaacggcgat taaagactgg gtgaatgcct
    24121 ataactcgtt aatagatacc ttcagtagcc tgaccaaata caccgccgta gatgcgggag
    24181 ctgatagcca gagttctagc aatggcgcac tgctcggcga ctccacgctg cggacgattc
    24241 agacgcagtt gaagtcgatg ctgagtaata ccgtcagttc ttccagctat aaaacgctgg
    24301 cgcagattgg tatcacgacc gatcccagcg atggcaaact ggaactggat gccgacaaac
    24361 tcaccgctgc actgaaaaaa gatgccagcg gcgtaggtgc attgattgtt ggcgatggta
    24421 aaaaaaccgg catcacgacc accatcggca gcaacctgac cagttggctt tcgacaacgg
    24481 gcattattaa agccgctacc gatggcgtta gtaagaccct gaataagtta actaaagact
    24541 acaacgccgc cagcgatcgc attgatgcgc aggtcgcgcg ctacaaaaaa caatttaccc
    24601 aactggacgt tttaatgacc tcgttaaaca gcaccagcag ctacttaacg cagcagttcg
    24661 aaaacaacag taattccaag taatcattat tcatcgggag acaggtcatg tacgcggcaa
    24721 aaggcaccca ggcctatgca caaattggcg tcgaaagcgc cgtaatgagc gccagccagc
    24781 agcagctggt caccatgcta tttgatggag tgctgagcgc actggttaga gcgcgcctgt
    24841 ttatgcagga caacaatcag caaggcaaag gcgtctcttt gtcaaaagcg atcaacatca
    24901 ttgagaacgg actgcgggtg agtcttgatg aagagagcaa agacgaacta acccaaaact
    24961 tgattgctct ttatagctat atggtcaggc gcttgctgca agccaattta cgcaacgatg
    25021 tctccgcagt cgaagaagtg gaagcattaa tgcgcaatat tgccgatgcc tggaaagagt
    25081 cgttactctc cccttctttg attcaggacc cagtctgatg aaccatgcac cgcatttgta
    25141 tttcgcctgg caacaactcg tcgaaaaaag ccagctcatg ttacgcctgg caacggaaga
    25201 acaatgggac gaactcatcg ccagcgaaat ggcgtatgtg aatgcggtgc aggagtatag
    25261 cacacctgac tgaagaggtt gccccgtcca ccacgatgca ggagcagctc cgcccgatgc
    25321 tgcgcctgat tctcgacaac gaaagcaagg taaagcagtt attacagatt cgtatggatg
    25381 aactggcgaa actggtcggt cagtcatcgg tgcaaaaatc ggtgttaagt gcctatggcg
    25441 atcagggcgg ctttgtgctg gctccgcaag ataacttctc gtgaatctta acgagctaat
    25501 ggttcgcgaa taatccgatt acggctacgc ttctaatgtt ccccttgaat ggagtcgaag
    25561 aatgcgtaat cccacgctgt tacaatgttt tcactggtat tacccggaag gcggtaagct
    25621 ctggcctgaa ctggccgagc gcgccgacgg ttttaatgat attggtatca atatggtctg
    25681 gttgccgccc gcctataaag gcgcatcggg cgggtattcg gtcggctacg actcctataa
    25741 tttatttgat ttaggcgagt ttgatcagaa aggcagcatc cctactaaat atggcgataa
    25801 agtacaattg ctggccgcca ttgacgccct gaaacgtaat gacattgcgg tgctgttgga
    25861 cgtggtagtc aaccacaaaa tgggcgcgga tgaaaaagaa gctattcgcg tgcagcgtgt
    25921 aaatgctgac gaccgtacgc aaattgatga agaaatcatt gagtgcgaag gctggacgcg
    25981 ttacaccttc cccgcccgtg ccgggcaata ctcacagttt atctgggatt tcaaatgttt
    26041 tagcggtatc gaccatatcg aaaaccctga tgaagatggc atatttaaaa ttgttaacga
    26101 ctacaccggc gaaggctgga acgatcaggt tgatgatgaa ttaggtaatt tcgattatct
    26161 gatgggcgag aatatcgatt ttcgcaatca tgccgtgacg gaagagatta aatactgggc
    26221 gcgctgggtg atggaacaaa cgcaatgcga cggttttcgt cttgatgcgg tcaaacatat
    26281 tccggcgtgg ttttataaag agtggatcga acacgtacag gaagttgcgc caaagccgct
    26341 gtttattgtg gcggagtact ggtcgcatga agtcgataaa ctgcaaacgt atattgatca
    26401 ggtggaaggc aaaaccatgc tgttcgatgc gccgctgcag atgaaattcc atgaagcatc
    26461 gcgcatgggg cgcgactacg acatgacgca gattttcacg ggtacattag tggaagccga
    26521 tcctttccac gccgtgacgc tcgttgccaa tcacgacacc caaccgttgc aagccctcga
    26581 agcgccggtc gaaccgtggt ttaaaccgct ggcgtatgcc ttaattttgt tgcgggaaaa
    26641 tggcgttcct tcggtattct atccggacct ctacggtgcg cattacgaag atgtcggtgg
    26701 tgacgggcaa acctatccga tagatatgcc aataatcgaa cagcttgatg agttaattct
    26761 cgcccgtcag cgtttcgccc acggtgtaca gacgttattt ttcgaccatc cgaactgcat
    26821 tgcctttagc cgcagtggca ccgacgaata tcccggctgc gtggtggtca tgtcgaacgg
    26881 ggatgatggc gaaaaaacca ttcatctggg agagaattac ggcaataaaa cctggcgtga
    26941 ttttctgggg aaccggcaag agagcgtaat aaccgacgaa cacggcgaag caaccttctt
    27001 ttgcaacggc ggcagcgtca gcgtgtgggt tatcgaagag gtgatttaaa ttcatccccg
    27061 gcggcaagcc ggggagattt cattacggca gtggcgtcgg taacggcgct ttatccagcg
    27121 cggcggcaca ctctgccgtc gggcgatcca cacgctccat cgtcatacca tcgtactcaa
    27181 tggtgttacc gtcacgctca acctcgtaca gctcacgttt tacggtaacg ttagtgagat
    27241 catcagacat caatgccaac ttacccggca cagcaatcac ccgctgccac tgacggcaat
    27301 ccagagtatc accctcttta gtgacaatca ggctgcctat cgcttccgga ctgaccagcg
    27361 cacgttgcgg ccctttggtc tgccagtagc ccgccagcca gtccggcgcg ggggttttca
    27421 cgacattgtt atagttttcg acttcggcac agcccgccag caacatgagc gcgcctgcaa
    27481 ttgcgagttt tttcatcatt cgtcctgcat gagaagaaaa gaggattgtg gcattaaagc
    27541 cctgatgtcg ccagcctttc caggttcaga gagaaatttg atctaactat tatttttgtg
    27601 aattattacc ccgaaaataa atttgcatga tgtatgattc gcgactcttg tttcaaacct
    27661 tctgagttca gaggctacat tcatgtcatg gcagcaattc aaacacgcct ggttgattaa
    27721 attctgggca cccatccctg cggtcatcgc ggcgggtatt ctctccactt actattttgg
    27781 cattactggc accttttggg ctgtcacggg tgaatttacc cgttggggcg gccagctcct
    27841 gcagctgttt ggcgtccatg ctgaagagtg gggttatttt aaaattatcc atctggaagg
    27901 atcgccatta acccgcatcg acgggatgat gatcctcggc atgtttggcg gctgctttgc
    27961 cgcagcgctg tgggccaaca atgtcaaact gcgcatgcca cgcagccgta tccgcattat
    28021 gcaggccatt attggcggta ttatcgctgg ttttggcgcg cgtctggcaa tgggctgtaa
    28081 cctggcggcg ttctttaccg gtattcctca gttctcgctg catgcctggt tctttgccat
    28141 cgccactgcc attggttcat ggtttggcgc acgctttacc ctgctgccca tcttccgtat
    28201 tcccgtgaaa atgcagaaag tttctgccgc ctcaccgctg acgcaaaaac cggatcaggc
    28261 gcggcgtcgt tttcgtctcg ggatgctggt ctttttcggt atgctgggct gggcgctgct
    28321 cacggcgatg aaccaaccaa aactggggct ggcaatgctg tttggcgtcg gctttggttt
    28381 actgattgaa cgtgcgcaaa tctgctttac ttcggcgttc cgcgatatgt ggatcaccgg
    28441 acgtacccat atggcgaaag caatcattat cggtatggcg gtgagtgcca tcgggatctt
    28501 cagttacgta cagttaggcg ttgaacccaa aatcatgtgg gcgggaccaa acgcggtaat
    28561 tggtggttta ctgtttggtt ttggcatcgt gctggcaggc ggctgcgaaa ccggctggat
    28621 gtaccgcgcg gtagaaggcc aggtgcacta ctggtgggtc ggtctgggca atgtgatcgg
    28681 ctcgacgatt ctggcgtatt actgggatga tttcgctccg gcgctggcca ccgactggga
    28741 caaaatcaac ctgctgaaaa cctttggccc gatgggtggc ctgctggtga catatttgct
    28801 gttgtttact gcgctgatgt tgattatcgg ctgggaaaaa cgcttcttcc gccgtgcggc
    28861 accgcagact gctaaggaga tcgcatgaaa aatatcgttc ctgattaccg ccttgatatg
    28921 gtgggtgaac cctgccctta tccggcagtc gcaacccttg aggcgatgcc gcagttaaaa
    28981 aaaggggaaa tcctggaagt ggtgagcgac tgtccacagt cgatcaataa tattccactg
    29041 gatgcgcgta atcacggcta tacggtgcgg gatattcagc aagacgggcc gaccattcgt
    29101 tatttaattc agaagtaatc cctcattccc gctgtggccc acagcgggaa catcgttgcc
    29161 tctgacacat agattttacc cgccccctct cctattcttt tcagtatgat ctcaggaggt
    29221 ttctatgtgt ggacgctttg cccaatccca aacgcgtgaa gattaccttg cgcttctcgc
    29281 ggaagatatt gaacgcgata ttccctacga tcccgaaccc attggcagat acaacgtcgc
    29341 gccgggaacc aaagttcttc tgctcagtga acgtgatgaa caccttcatc tggatccggt
    29401 tttctgggga tatgctcccg gatggtggga taaaccgccg ctgattaacg cccgcgtaga
    29461 aactgccgca accagtcgca tgtttaaacc gctctggcaa catggtcggg caatctgttt
    29521 tgccgatggc tggtttgagt ggaaaaaaga aggcgacaaa aaacagcctt tttttatcta
    29581 tcgtgctgat ggacaaccta tttttatggc cgcgataggt agcacaccat ttgagcatgg
    29641 tgacgaagcc gaaggatttt taattgtcac tgctgcagca gaccagggtc tggtagacat
    29701 tcatgaccgc cgcccgctgg ttctgtcgcc agaagctgca caggaatgga tgcggcaaga
    29761 gattggcggt aaagaagcat cagaaattgc taccaacggc tgtgtgccag caaaccagtt
    29821 cacctggcac ccggtatcgc gcgcggtagg taatgtcaaa aaccagggcg cggagttaat
    29881 tcaacctgtt tgttgacatc ctccacgccc tgaaggacga ggctccctgc tacgttcagg
    29941 ctgtcgcctg aatcatttcg gtgggttcct gcttcaacgg gcggcctgac tgcaccatct
    30001 ctccacaggc aagaacggcg tgccccgccg ctaaaatgtt acgagcgcca tttacatcgg
    30061 cgttcgctgt atatccacat acctggcatc tgaatttact ttgtgacagg cggttttctt
    30121 tcgctgtatg accacagcac gcgcaacgct ggcttgtgca cgctggcgga acagcaaaca
    30181 cctgaccgcc acgccagagc tgcttgtact caagctggcg gcgcatttca taccagccct
    30241 gatccagtat cgaacggttt aaacctgatt ttgcccggac attgcgcccc ggc
//
LOCUS       DADMJB010000031        29251 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.031, whole genome shotgun sequence.
ACCESSION   DADMJB010000031 DADMJB010000000
VERSION     DADMJB010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29251
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.031"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..154
                     /locus_tag="JN078_001269"
     CDS             <1..154
                     /locus_tag="JN078_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2135 domain-containing protein"
                     /protein_id="HAY9040533.1"
                     /translation="NYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTL
                     VKSFDW"
     gene            429..3278
                     /gene="rcsC"
                     /locus_tag="JN078_001270"
     CDS             429..3278
                     /gene="rcsC"
                     /locus_tag="JN078_001270"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416722.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     RcsC"
                     /protein_id="HAY9040534.1"
                     /translation="MKYLASFRTTLKASRYMFRALALVLWLLIAFSSVFYIVNALHQR
                     ESEIRQEFNLSSDQAQRFIQRTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAF
                     EPLFADSDCSAMSNTWRGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGL
                     RDMPVERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANR
                     LQALLGVEQTIRMENFFLPGTLPMGVTILDENGHTLISLTGPESKIKGEPRWMQERSW
                     FGYTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLA
                     RMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLN
                     MLTHEDRQRLTQIICGQQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRV
                     KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLV
                     TAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG
                     LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDT
                     GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS
                     QFTVRIPLYGAQYPQKKGVEGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQE
                     PTPEDVLITDEVVSKKWQGRAVVTFCRRHIGIPLEKAPGEWVHSVAAPHELPALLARI
                     YLIEMESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTAND
                     GVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRC
                     LESGMDSCLSKPVTLDVIKQTLTVYAERVRKSRES"
     gene            complement(3478..4128)
                     /gene="rcsB"
                     /locus_tag="JN078_001271"
     CDS             complement(3478..4128)
                     /gene="rcsB"
                     /locus_tag="JN078_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator RcsB"
                     /protein_id="HAY9040535.1"
                     /translation="MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINN
                     LPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLD
                     IEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR
                     LFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIALLNYLSSVTLSPADKD"
     gene            complement(4145..6817)
                     /gene="rcsD"
                     /locus_tag="JN078_001272"
     CDS             complement(4145..6817)
                     /gene="rcsD"
                     /locus_tag="JN078_001272"
                     /EC_number="2.7.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase RcsD"
                     /protein_id="HAY9040536.1"
                     /translation="MRQKETTATTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNA
                     WLKDKSYQIVDITHAIQKRVNTWRYVTWQIYDNIAATTSPSSGEGLQETRLKQDVYYL
                     EKPRRKTEALIFGSHDNSTLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLVLIST
                     LPLKDLTSGFKESTISDIVDSRRAEMLQQANALDERESFSNMRRLAWQNGHYFTLRTT
                     FNQPGHLATVVAFDLPINDLIPPGMPLDSFRLEPDATATGDNDNEKEGTDSVSIHFNS
                     TKIEISSALNSTDMRLVWQVPYGTLLLDTLQNILLPLLLNIGLLALALFGYTTFRHFS
                     SRSTESLPSTAVNNELRILRAINEEIVSLLPLGLLVHDQESNRTVISNKIADHLLPHL
                     NLQNITTMAEQHQGIIQATINNELYEIRMFRSQVAPRTQIFIIRDQDREVLVNKKLKQ
                     AQRLYEKNQQGRMTFMKNIGDALKEPAQSLAESAAKLNAPESKQLANQADVLVRLVDE
                     IQLANMLADDSWKSETVLFSVQDLIDEVVPSVLPAIKRKGLQLLINNHLKAHDMRRGD
                     RDALRRILLLLMQYAVTSTQLGKITLEVDQDESSEDRLTFRILDTGEGVSIHEMDNLH
                     FPFINQPQNDRYGKADPLAFWLSDQLARKLGGHLNIKTRDGLGTRYSVHIKMLAADPE
                     VEEEEERLLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDERLISQDYDIFLTDNP
                     SNLTASGLLLSDDESGVREIGPGQLCVNFNMSNAMQEAVLQLIEVQLAQEEVTESPLG
                     GDENAQLHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPG
                     KQLCETLEHLIREKDVPGIEKYISDIDSYVKSLL"
     gene            7556..8686
                     /gene="ompC"
                     /locus_tag="JN078_001273"
     CDS             7556..8686
                     /gene="ompC"
                     /locus_tag="JN078_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpC"
                     /protein_id="HAY9040537.1"
                     /translation="MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYF
                     SDNKSEDGDQTYVRLGFKGETQVTDQLTGYGQWEYQIQGNTSEDNKENSWTRVAFAGL
                     KFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFG
                     LVDGLNFAVQYQGKNGSVSGEGMTNNGRGALRQNGDGVGGSITYDYEGFGIGAAVSSS
                     KRTDDQNGSYISNGVVRNYIGTGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSL
                     GWANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKNLGVINSRNYDDEDILKYVDVGATY
                     YFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF"
     gene            8798..9853
                     /gene="apbE"
                     /locus_tag="JN078_001274"
     CDS             8798..9853
                     /gene="apbE"
                     /locus_tag="JN078_001274"
                     /EC_number="2.7.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase ApbE"
                     /protein_id="HAY9040538.1"
                     /translation="MEISFTRVALLAAALFFVGCDQKPQPAKTHATEVTVLEGKTMGT
                     FWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEA
                     MAEIVTTSLRIGAKTDGAMDITVGPLVNLWGFGPEQQPVQIPSQEQIDEMKAKTGLQH
                     LTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSR
                     GINGEGLPWRVAIQKPTDKENAVQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQ
                     TGRPIEHNLVSVTVIAPTALEADAWDTGLMVLGPEKAKEVVRREGLAVYMITKEGDSF
                     KTWMSPQFKSFLVSEKN"
     gene            9927..10979
                     /gene="ada"
                     /locus_tag="JN078_001275"
     CDS             9927..10979
                     /gene="ada"
                     /locus_tag="JN078_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-binding transcriptional
                     regulator/O6-methylguanine-DNA methyltransferase Ada"
                     /protein_id="HAY9040539.1"
                     /translation="MKNATCLTDDQRWQSVLARDPNADGEFVFAVRTTGIFCRPSCRA
                     RHALRENVSFYANASEALAAGFRPCKRCQPDKANAQQHRLDKITHACRLLEQETPVTL
                     EALADQVAMSPFHLHRLFKATTGMTPKAWQQAWRARRLRESLAKGESVTTSILNAGFP
                     DSSSYYRKADETLGMTAKQFRHGGENLAVRYALADCALGRCLVAESERGICAILLGDD
                     DATLISELQQMFPAADNAPADLTFQQHVREVIASLNQRDTPLTLPLDIRGTAFQQQVW
                     QALRTIPCGETVLANAIGKPKAVRAVASACAANKLAIVIPCHRVVGGDGTLSGYRWGV
                     SRKAQLLRREAENEER"
     gene            10979..11629
                     /gene="alkB"
                     /locus_tag="JN078_001276"
     CDS             10979..11629
                     /gene="alkB"
                     /locus_tag="JN078_001276"
                     /EC_number="1.14.11.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA oxidative demethylase AlkB"
                     /protein_id="HAY9040540.1"
                     /translation="MLDLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQS
                     PFRQMVTPGGYTMSVAMTNCGHLGWTIHRQGYLYSPIDPQTNKPWPAMPQSFHDLCQR
                     AATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLK
                     RNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFYPLTTDCRYNLTFRQAGKKE"
     gene            11705..13348
                     /gene="yojI"
                     /locus_tag="JN078_001277"
     CDS             11705..13348
                     /gene="yojI"
                     /locus_tag="JN078_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin J25 efflux ABC transporter YojI"
                     /protein_id="HAY9040541.1"
                     /translation="MELLVLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIEMA
                     DTSLLVLPEFLGLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQL
                     GSASLLAGLTSDVRNITIAFVRLPELVQGIILTIGSAAYLWMLSGKMLLVTAIWMAIT
                     IWGGFVLVARVYKHMATLRETEDKLYTDFQTVLEGRKELTLNRERAEYVFNNLYIPDA
                     QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFWMANSLGWADTNVAATYSLTLLFLR
                     TPLLSAVGALPTLLMAQVAFNKLNKFALAPFKAEFPRPQAFPNWQTLELRNVTFSYQD
                     NAFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSGEQP
                     EDYRKLFSAVFTDVWLFDQLLGPEGKPANPQLVEKWLAQLKMAHKLELSNGRIVNLKL
                     SKGQKKRVALLLALAEERDIILLDEWAADQDPHFRREFYQVLLPLMQEMGKTIFAISH
                     DDHYFIHADRLLEMRNGQLSELTGEERDAASRDAVARTA"
     gene            13566..15212
                     /gene="mqo"
                     /locus_tag="JN078_001278"
     CDS             13566..15212
                     /gene="mqo"
                     /locus_tag="JN078_001278"
                     /EC_number="1.1.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase (quinone)"
                     /protein_id="HAY9040542.1"
                     /translation="MKKVTAMLFSMAVGLNAVSMAAKAKASEEQETDVLLIGGGIMSA
                     TLGTYLRELEPEWSMTMLERLEGVAQESSNGWNNAGTGHSALMELNYTPQNADGSISI
                     EKAVAINEAFQISRQFWAHQVERGVLRTPRSFINTVPHMSFVWGEDNVNFLRARYAAL
                     QQSSLFRGMRYSEDHAQIKEWAPLVMEGRDPQQKVAATRTEIGTDVNYGEITRQLIAS
                     LQKKSNFSLQLSSEVRALKRNDDNTWTVTVADLKNGTAQNIRAKFVFIGAGGAALKLL
                     QESGIPEAKDYAGFPVGGQFLVSENPDVVNHHLAKVYGKASVGAPPMSVPHIDTRVLD
                     GKRVVLFGPFATFSTKFLKNGSLWDLMSSTTTSNVMPMMHVGLDNFDLVKYLVSQVML
                     SEEDRFEALKEYYPQAKKEDWRLWQAGQRVQIIKRDADKGGVLRLGTEVVSDQQGTIA
                     ALLGASPGASTAAPIMLDLLEKVFGDRVSSPQWQATLKAIVPSYGRKLNGDVAATERE
                     LQYTSEVLGLKYDKPQAADSTPKPQLKPQPVQKEVADIAL"
     gene            complement(15362..15850)
                     /gene="eco"
                     /locus_tag="JN078_001279"
     CDS             complement(15362..15850)
                     /gene="eco"
                     /locus_tag="JN078_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease inhibitor ecotin"
                     /protein_id="HAY9040543.1"
                     /translation="MKTILPAVLFAAFATTSAWAAESVQPLEKIAPYPQAEKGMKRQV
                     IQLTPQEDESTLKVELLIGQTLEVDCNLHRLGGKLESKTLEGWGYDYYVFDKVSSPVS
                     TMMACPDGKKEKKFVTAYLGDAGMLRYNSKLPIVVYTPDNVDVKYRVWKAEEKIDNAE
                     VR"
     gene            complement(15985..16149)
                     /locus_tag="JN078_001280"
     CDS             complement(15985..16149)
                     /locus_tag="JN078_001280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040544.1"
                     /translation="MHTPIGVKPVAGSKEWREAWQKRAFAHISNGYKHIYIAINSPEI
                     FLLVCSLIRI"
     gene            16258..16752
                     /gene="napF"
                     /locus_tag="JN078_001281"
     CDS             16258..16752
                     /gene="napF"
                     /locus_tag="JN078_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapF"
                     /protein_id="HAY9040545.1"
                     /translation="MKIDASRRGILTGRWRKASNGIRPPWSGDESHFLTHCTRCDACI
                     NACENNILQRGAGGYPSVNFKNNECSFCYACAQACPESLFSPRHTRAWDLQFTIGDAC
                     LAYQSVECRRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAITAEY
                     LHAH"
     gene            16742..17005
                     /gene="napD"
                     /locus_tag="JN078_001282"
     CDS             16742..17005
                     /gene="napD"
                     /locus_tag="JN078_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HAY9040546.1"
                     /translation="MHTNWQVCSLVVQAKSERISDISTQLNAFPGCEVAVSDAPSGQL
                     IVVVEAEDSETLIQTIESVRNVEGVLAVSLVYHQQEEQGEETP"
     gene            17002..19488
                     /gene="napA"
                     /locus_tag="JN078_001283"
     CDS             17002..19488
                     /gene="napA"
                     /locus_tag="JN078_001283"
                     /EC_number="1.7.99.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HAY9040547.1"
                     /translation="MKLSRRSFMKANAVAAAAAAAGLSVPGVARAVVGQQEAIKWDKA
                     PCRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLL
                     RMKNGKYDKEGEFTLITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAAS
                     KLFKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAE
                     MHPILWSRITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYII
                     QNNAINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVA
                     EYTLEKTAEMTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHL
                     LTGKISQPGCGPFSLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPS
                     GTIPAKIGLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVS
                     DPYPTVSALAADLILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLVQFS
                     RRFKTEEVWPEDLLAKKPELRGKTLYEVLYATPEVSKFPVSELAEDQLNDESRELGFY
                     LQKGLFEEYAWFGRGHGHDLAPFDDYHKARGLRWPVVNGKETQWRYSEGNDPYVKAGE
                     GYKFYGKPDGKAVIFALPFEPAAEAPDEEYDLWLSTGRVLEHWHTGSMTRRVPELHRA
                     FPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQGLVYMPFFDAA
                     QLVNKLTQDATDPLSKETDFKKCAVKLEKV"
     gene            19495..20190
                     /gene="napG"
                     /locus_tag="JN078_001284"
     CDS             19495..20190
                     /gene="napG"
                     /locus_tag="JN078_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HAY9040548.1"
                     /translation="MSRSAKPQNGRRRFLRDVVRTAGGLAAVGVALGLQQQTARASGV
                     RLRPPGAINENAFASACVRCGQCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMC
                     EDIPCAKVCPSGALDREIESIDDARMGLAVLVDQENCLNFQGLRCDVCYRECPKIDEA
                     ITLELERNTRTGKHARFLPTVHRDACTGCGKCEKVCVLEQPAIKVLPLSLAKGELGHH
                     YRFGWLEGNNGKS"
     gene            20177..21040
                     /gene="napH"
                     /locus_tag="JN078_001285"
     CDS             20177..21040
                     /gene="napH"
                     /locus_tag="JN078_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HAY9040549.1"
                     /translation="MANRKRDAGREALEKKGWWRSHRWLVLRRLCQFFVLGMFLSGPW
                     FGVWILHGNYSSSLLFDTVPLTDPLMTLQSLASGHLPATVALTGAVIITVLYALAGKR
                     LFCSWVCPLNPITDLANWLRRRFDLNQSATIPRHIRYVLLVVILLGSALTGTLIWEWI
                     NPVSLMGRSLVVGFGSGALLILALFLFDLLVVEHGWCGHICPVGALYGVLGSKGVITV
                     AATDRQKCNRCMDCFHVCPEPRVLRAPVLDEQSPVQVTSRDCMTCGRCVDVCSEDVFT
                     ITTRWSSGAKS"
     gene            21037..21486
                     /gene="napB"
                     /locus_tag="JN078_001286"
     CDS             21037..21486
                     /gene="napB"
                     /locus_tag="JN078_001286"
                     /EC_number="1.9.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311119.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HAY9040550.1"
                     /translation="MKSHDLKKALCQWTAMLALVVSGAVWAANGVDFSQSPEVSGTQE
                     GAIRMPKEQERMPLNYVNQPPMIPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISP
                     THFMDSDGKVGAEVAPRRYFCLQCHVPQADTAPIVGNTFTPSKGYGK"
     gene            21496..22098
                     /gene="napC"
                     /locus_tag="JN078_001287"
     CDS             21496..22098
                     /gene="napC"
                     /locus_tag="JN078_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type protein NapC"
                     /protein_id="HAY9040551.1"
                     /translation="MGNSDRKPGLIKRLWKWWRTPSRLALGTLLLIGFVGGIVFWGGF
                     NTGMEKANTEEFCISCHEMRNTVYQEYMDSVHYNNRSGVRATCPDCHVPHEFVPKMIR
                     KLKASKELYGKIFGVIDTPQKFEAHRLTMAQNEWRRMKDNNSQECRNCHNFEYMDTTA
                     QKSVAAKMHDQAVKDGQTCIDCHKGIAHKLPDMREVEPGF"
     gene            22117..22734
                     /gene="ccmA"
                     /locus_tag="JN078_001288"
     CDS             22117..22734
                     /gene="ccmA"
                     /locus_tag="JN078_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001300065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis heme-transporting ATPase
                     CcmA"
                     /protein_id="HAY9040552.1"
                     /translation="MLEARELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLL
                     RLLTGLSRPDAGEVLWQGQPLHQVRDSYHQNLLWIGHQPGIKTRLTALENLHFYHRDG
                     DTAQCLEALAQAGLAGFEDIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAIDVN
                     GVDRLTQRMAQHTEQGGIVILTTHQPLNVAESKIRRISLTQTRAA"
     gene            22731..23393
                     /gene="ccmB"
                     /locus_tag="JN078_001289"
     CDS             22731..23393
                     /gene="ccmB"
                     /locus_tag="JN078_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HAY9040553.1"
                     /translation="MMFWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQ
                     LLARIAPGIIWVAALLSSLLALERLFRDDLQDGSLEQLMLLPLPLPAVVLAKVMAHWM
                     VTGLPLLILSPLVAMLLGMDVYGWQVMALTLLLGTPTLGFLGAPGVALTVGLKRGGVL
                     LSILVLPLTIPLLIFATAAMDAASMHLPVDGYLAILGALLAGTATLSPFATAAALRIS
                     IQ"
     gene            23435..24172
                     /gene="ccmC"
                     /locus_tag="JN078_001290"
     CDS             23435..24172
                     /gene="ccmC"
                     /locus_tag="JN078_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmC"
                     /protein_id="HAY9040554.1"
                     /translation="MWKTLHQLAIPPRLYQICGWFIPWLAIASVVVLTVGWIWGFGFA
                     PADYQQGNSYRIIYLHVPAAIWSMGIYASMAVAAFIGLVWQMKMANLAVAAMAPIGAV
                     FTFIALVTGSAWGKPMWGTWWVWDARLTSELVLLFLYVGVIALWHAFDDRRLAGRAAG
                     ILVLIGVVNLPIIHYSVEWWNTLHQGSTRMQQSIDPAMRSPLRWSIFGFLLLSATLTL
                     MRMRNLILLMEKRRPWVSELILKRGRK"
     gene            24169..24378
                     /gene="ccmD"
                     /locus_tag="JN078_001291"
     CDS             24169..24378
                     /gene="ccmD"
                     /locus_tag="JN078_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HAY9040555.1"
                     /translation="MTLAFASWNEFFAMGGYAFFVWLAVVMTVIPLVVLVVHSVMQHR
                     AILCGVEQQRAREARLRAAQQQEAA"
     gene            24375..24854
                     /gene="ccmE"
                     /locus_tag="JN078_001292"
     CDS             24375..24854
                     /gene="ccmE"
                     /locus_tag="JN078_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HAY9040556.1"
                     /translation="MNIRRKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEIL
                     YGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDL
                     FREGQGVVVQGELEKGNHILAKEVLAKHDENYTPPEVEKAMEANHRRPASVYKDPAS"
     gene            24851..26794
                     /locus_tag="JN078_001293"
     CDS             24851..26794
                     /locus_tag="JN078_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HAY9040557.1"
                     /translation="MMPEIGNGLLCLALGIALLLSVYPLWGVARGDARMMASSRLFAW
                     LLFMSVAGAFLVLVNAFVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLL
                     MSGWTFAVAIFSQRIPLDIVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRD
                     LNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIF
                     LTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWT
                     LLLAISAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVIGGSLLLFAARG
                     HKVRSRVNNALWSRESLLLANNVLLVAAMLVVLLGTLLPLVHKQLGLGSISIGEPFFN
                     TMFTWLMVPFALLLGVGPLVRWGRDRPRKIRNLLIIAFISTLVLSLLLPWLFESKVVA
                     MTVLGLAMACWIAVLAIAEAALRISRGTKTTFSYWGMVAAHLGLAVTIVGIAFSQNYS
                     VERDVRMKSGDSVDIHEYRFTFRDVKEVTGPNWRGGVATIGVTREGKPETVLYAEKRY
                     YNTAGSMMTEAAIDGGITRDLYAALGEELENGAWAVRLYYKPFVRWIWAGGLMMALGG
                     LLCLFDPRYRKRVSPQKTAPEAV"
     gene            26791..27348
                     /gene="dsbE"
                     /locus_tag="JN078_001294"
     CDS             26791..27348
                     /gene="dsbE"
                     /locus_tag="JN078_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbE"
                     /protein_id="HAY9040558.1"
                     /translation="MKRKVLLIPLIIFLAIAAALLWQLARNAEGDDPTNLESALIGKP
                     VPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVG
                     MNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHA
                     GDLNPRVWEEEIKPLWEKYSKEAAQ"
     gene            27345..28397
                     /locus_tag="JN078_001295"
     CDS             27345..28397
                     /locus_tag="JN078_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein CcmH"
                     /protein_id="HAY9040559.1"
                     /translation="MRFLLGVLMLMISGSALATIDVLQFKDEAQEQQFRQLTEELRCP
                     KCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNFVTYDPPLTPLTV
                     LLWVLPVVAIGIGGWVIYARSRRRVRVVPDAFPEQSVPEGKRAGYIVYLPGIVVALIV
                     AGVSYYQTGNYQQVKIWQQATAQAPALLDRALDPKADPLNEEEMSRLALGMRTQLQKN
                     PGDIEGWIMLGRVGMALGNASIATDAYATAYRLDPKNSDAALGYAEALTRSSDPNDNR
                     LGGELLRQLVRTDHSNIRVLSMYAFNAFEQQRFGEAVAAWEMMLKLLSANDTRRAVIE
                     RSIAQAMQHLSPQESK"
     gene            complement(28432..29079)
                     /gene="narP"
                     /locus_tag="JN078_001296"
     CDS             complement(28432..29079)
                     /gene="narP"
                     /locus_tag="JN078_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite response regulator protein NarP"
                     /protein_id="HAY9040560.1"
                     /translation="MPEATPFQVMIVDDHPLMRRGVRQLLELDPSFEVVAEAGDGASA
                     IDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALIDAG
                     ADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELD
                     VLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQQRGAQ"
BASE COUNT         6680 a         7220 c         8104 g         7247 t
ORIGIN      
        1 caactactat ggtgggcgca gcgaaacgga attaaccacc gcccaactga cgctgatcac
       61 cgatgaagga tcggtcaatg agaaacagga aacatttatt gtaccgatgc gtaatgctgg
      121 cgagctgacg ctggtgaaaa gttttgactg gtgatccatc ccttcacaca acctggctct
      181 ctcttttttc agataagact gctgggcgat ctgccgacgc caggatataa ccattaacaa
      241 gcgtcggcag attggtcatt tcttattttt cgtactgaga actgtccatc tactccggct
      301 ttcctggtta aggcaatggt ttctaagcga tacgcattat tgcaataatg acagaacatt
      361 gcggtaacac gcttttaccg ctaccttaac cacactccat cggtcacctg aggcggagct
      421 tcgccccttt gaaatacctt gcttcttttc gtacaaccct gaaagcctcg cgctacatgt
      481 tcagagcatt ggcgttagtg ctctggctgt tgattgcttt ttcatccgtt ttttacatcg
      541 ttaatgcgtt acatcagcga gaatcggaaa ttcgtcagga atttaatctg agttccgatc
      601 aggctcagcg ctttattcaa cgcacctctg atgtgatgaa agagctgaag tacatcgccg
      661 aaaatcgctt atcggcagaa aacggtgtgc tttccccgcg tggacgagaa acgcaggcgg
      721 atgtgcctgc gtttgaaccg ctgtttgccg actccgattg ttccgcaatg agtaacacct
      781 ggcgaggttc tctggagtca ttggcgtggt ttatgcgcta ctggcgcgat aatttttctg
      841 cggcttacga tctaaaccgg gtatttttaa tcggcagcga taacctctgc atggccaatt
      901 tcggtctgcg tgatatgcca gtggaacgcg ataccgcgtt gaaagctttg catgaacgca
      961 tcaataaata tcgaaatgca ccacaagatg atagcggcag taacctctac tggatcagcg
     1021 aaggtccgcg ccctggcgtc gggtattttt acgcgttgac gccagtttat ctggcgaacc
     1081 ggttgcaggc gcttttgggg gtcgagcaga ccatccggat ggagaacttt ttcttaccgg
     1141 gtacgttgcc gatgggggtt accattcttg atgaaaatgg tcataccctg atttcgctta
     1201 ccggaccaga aagtaaaatt aagggcgagc ctcgctggat gcaggaacgc tcctggtttg
     1261 gctatacgga agggttccgg gagctggtgc tgaagaaaaa tctgccaccc tcatcgctaa
     1321 gcatcgtgta ttcggtgccg gttgataagg tgctggaacg cattcgcatg ttgatcctta
     1381 acgcaatttt gctgaatgtg cttgccggag ctgcattgtt tactctcgca cggatgtacg
     1441 agcgacgtat tttcattccg gcggaaagcg acgccctgcg actggaagaa catgagcagt
     1501 tcaatcgcaa gattgtcgcc tccgcgccag tgggtatctg cattttgcgt accgctgatg
     1561 gcgtcaatat tttaagtaac gaactggcgc atacctatct caatatgctt acgcatgagg
     1621 accgccaacg actgacgcaa attatctgtg ggcagcaggt caattttgtt gatgtcctga
     1681 ccagcaacaa taccaatctg caaatcagct tcgtccattc gcgctatcgt aatgaaaacg
     1741 tggccatttg tgtgctggtg gatgtttctt cgcgcgtgaa gatggaagag tcgttgcagg
     1801 agatggcaca agcagcggaa caggcgagcc agtcaaaatc gatgttcctt gccaccgtca
     1861 gtcatgagct gcgaacgccg ctgtatggca ttatcggtaa cctggatctg ttgcaaacca
     1921 aagagttacc gaaaggcgtc gatcggctgg tgacggcaat gaacaactct tccagcctgt
     1981 tgttgaaaat tatcagcgat attctcgatt tctcgaagat tgaatcggaa cagttgaaga
     2041 tcgaaccgcg tgagttttca ccgcgtgaag tgatgaacca catcaccgcc aactatttac
     2101 cgctggtggt acgcaagcag ttaggcttgt actgctttat tgaaccggat gtgccagtgg
     2161 ccttaaatgg cgacccgatg cgtttacagc aggtcatctc caacctgttg agtaacgcca
     2221 taaaattcac cgataccggc tgtatagttt tgcatgtccg cgctgatggc gattatctct
     2281 ctatccgtgt tcgcgatacc ggcgtgggga ttccggcgaa agaagtggtg cgcttgtttg
     2341 atcccttctt ccaggtcgga acgggcgtac agcgaaactt ccaggggacc ggtctgggtc
     2401 tggcgatttg tgaaaaactg atcagcatga tggacggcga tatctcggta gattcagaac
     2461 cgggaatggg cagccagttt accgtgcgta ttccgttgta cggcgctcag tacccgcaga
     2521 aaaaaggcgt ggaagggttg agtggtaaac gctgctggct ggcggtccgc aatgcgtcgc
     2581 tctgtcagtt cctggaaact agtttgcagc gcagcggcat cgtcgttaca acatacgaag
     2641 ggcaggaacc gactcccgaa gatgtgttaa ttactgacga ggtagtgagt aaaaaatggc
     2701 agggtagagc ggtagtgacc ttctgtcgtc gccatattgg tattccgctg gagaaagcgc
     2761 caggggagtg ggtacacagt gtggctgccc cgcatgagct accggcattg ttggcgcgta
     2821 tttatttgat cgagatggag agcgacgatc ctgctaacgc tctgccgtcg acggacaaag
     2881 cggtcagcga taatgacgat atgatgattc tggtcgtgga tgatcatccg attaaccgac
     2941 gtctgctggc agatcagttg ggatcgttgg gctatcaatg taaaaccgcg aatgatggtg
     3001 tcgatgcgct taatgtactt agcaagaatc atattgatat cgtgcttagc gacgtcaaca
     3061 tgccaaatat ggatggttac cgcttgacgc aacgcattcg tcagttggga ctgacgttgc
     3121 cggtaatcgg agtaactgct aatgcgttgg ctgaagagaa gcagcggtgt ctggagtccg
     3181 gtatggacag ctgcctgtcg aagccggtaa cgctggatgt gataaaacag acgctgacgg
     3241 tatatgccga gagggtcagg aaatcgcggg aatcgtagga cggataaggt gtttatgtcg
     3301 catctggcat tcagtgcaaa tgccagatgc gacgctgacg cgtcttatct ggcctacttt
     3361 gatgtaatct gttgaaataa tgggaatcgt aggacgcata aggcgtttac gccgcatccg
     3421 gcaatcggtg caaatgccag ataagacact aacgcgtctt atctggccta caggtgatta
     3481 gtctttatct gccggactta acgtcactga agagagataa ttcagcaggg cgatatcgtt
     3541 ctcgacaccc agcttcatca tcgcagattt cttctggcta ctgatggttt taatactgcg
     3601 gttcagcttt ttagcgatct cggtcaccaa gaagccttcc gcaaacaggc gcagaacttc
     3661 actctctttt ggcgagagac gcttgtcacc gtaaccacca gcactgattt tttccaacag
     3721 gcgagaaacg ctttccgggg taaatttctt ccctttctgc agcgcggcga gagctttcgg
     3781 cagatcggtc ggtgcacctt gtttcagcac gatcccttcg atatccagat ccaataccgc
     3841 actaagaatc gccgggttgt tgttcatagt cagaacaatg atcgacaggc ttgggaaatg
     3901 gcgcttgatg tacttgatta aggtaatgcc atcgccgtac ttatcgccag gcatggagag
     3961 atcggtaatc aacacatgcg catccagttt cggcaggttg ttgatcagtg ctgtagagtc
     4021 ttcaaattcg ccgacaacat tcacccactc aatttgctca agtgatttgc gaataccgaa
     4081 caagactatc ggatggtcat cggcaataat tacgttcata ttgttcatgt aataggctac
     4141 cttgctacag caagctcttg acataactgt caatgtcgct gatgtatttt tctattcctg
     4201 gaacatcctt ctcacgaatc agatgttcca gcgtttcaca taactgcttg ccgggtacca
     4261 gatttagcat ggcaaatacg cctttaagac gatgagccgt ttgggctaac gcagcaaagt
     4321 cactggttgc tgcttcagta tacagcctct taacatcatc cggtactgtg tctacaaaga
     4381 gcgcataata gccgctggca tggagttgcg cattttcatc tccgcccaga ggcgattctg
     4441 tcacctcttc ctgcgccagt tgcacttcaa ttaattgtaa gaccgcttcc tgcatagcgt
     4501 tgctcatatt gaagttgacg cacaattgac caggcccaat ttcccgtacg ccagactcat
     4561 catcgcttaa aagcaagcca gaggcagtaa gattagacgg attatccgtt aaaaagatat
     4621 cataatcttg actaattaat ctttcatcgg gtgtgataca ggttgcaccc caattttcta
     4681 actggcgagt gacaatattc cgaatttctg ccgaagtaac atccaccatt acgcagacat
     4741 catccagtaa acgctcttct tcctcttcaa cttccgggtc agcggcgagc attttgatat
     4801 gcacagagta gcgtgtacca agcccatccc gcgttttgat gtttaaatga ccgcccagtt
     4861 tacgcgccag ttgatcgctc agccagaatg ccagcgggtc cgccttgcca tagcgatcgt
     4921 tttggggctg gttgataaac gggaagtgca aattatccat ttcatgaata cttacgcctt
     4981 ctcccgtgtc cagaatgcgg aatgtcaggc ggtcttcaga ggactcatcc tgatcaacct
     5041 caagggtgat ttttcccaat tgcgttgagg tcacggcata ttgcatcagt agcagcaaaa
     5101 tacgtcgtaa ggcatcgcga tcgccgcggc gcatatcgtg tgctttcaga tgattgttaa
     5161 tcagcagttg cagaccttta cgcttgatgg caggcaacac tgaaggcaca acttcatcaa
     5221 ttaaatcctg cacggagaac agcaccgtct cacttttcca gctatcgtcc gcaagcatgt
     5281 tcgctaactg tatttcatcg accagccgca ccagcacatc tgcctgattc gccagttgtt
     5341 tgctttccgg ggcgttgagt ttagccgcgc tctccgccag ggactgtgcg ggttctttca
     5401 gcgcatcgcc aatgtttttc ataaaggtca tccgcccctg ctggtttttc tcatacagac
     5461 gctgcgcctg cttgagtttc ttgtttacca gcacttcgcg atcctgatcg cgaataatga
     5521 aaatttgtgt gcgcggcgcg acctggctgc ggaacatgcg gatctcatac agctcgttat
     5581 tgatcgtcgc ctgaataatc ccctgatgct gttccgccat ggtggtgatg ttttgcagat
     5641 tcaaatgcgg cagcaaatga tcggcaattt tgttacttat gacagtgcgg ttcgattcct
     5701 gatcgtgaac cagcaggccg agcggcagca gtgagactat ctcttcatta attgcccgta
     5761 aaatgcgcaa ttcgttattg accgccgtgc tgggtagact ttctgtactg cggctggaga
     5821 aatggcggaa tgtggtatag ccaaataacg ccagcgccag caaaccgatg ttcagcagca
     5881 gtggcagcag aatgttttgc aacgtatcca gcaataaggt gccataagga acctgccaga
     5941 ccaggcgcat atcggtagag ttgagtgccg aggagatttc aatcttcgta ctgttaaagt
     6001 ggatactgac gctatccgtc ccttctttct cattatcatt gtctcccgtt gccgtcgcgt
     6061 ctggctcaag gcggaaactg tccagcggca tacccggtgg gatcaaatca ttaatcggta
     6121 gatcaaaagc tacgaccgtt gccagatgtc ccggctggtt gaacgtggta cgcaaggtaa
     6181 agtaatgacc gttctgccag gccaggcggc gcatgttaga aaaactttcg cgttcatcga
     6241 gggcgttggc ctgttgcaac atctctgcac gacgtgaatc aacaatgtcg ctgatggtcg
     6301 attctttaaa tccggaggtg agatctttga ggggcagggt tgagatcagc accagactgt
     6361 tatcctgacc attcaggtaa tacatcgacc acggtacatt ttctgcgccc cacaatgtgt
     6421 ccagataggt ggacatccgc tgagtcatct caagcgttga gttgtcgtga gagccaaaga
     6481 ttaacgcttc cgttttgcgg cgcggtttct ccagatagta gacatcctgt ttcaggcgcg
     6541 tctcttgtaa accttcgccg gaggaggggg aggttgtcgc ggcaatgttg tcgtagatct
     6601 gccaggtcac gtaacgccag gtattgacgc gcttttggat agcgtgggta atgtcgacaa
     6661 tctggtaact tttatctttc agccatgcgt taacggcgct ttgtaccatt acacccatcg
     6721 tcaccagtaa cacaatgatc aacagtaaaa agaagcgggt aatgctcccc ggtaggagtg
     6781 aaaagcgggt cgtggccgtt gtctctttct gacgcattcg tgtttatgac ctgttaaaac
     6841 ttcgcgaagt gatagggcag tataaagggt acagtgtgaa attccagact cttacctgat
     6901 tgatgattct ctattctccc gtgatattta tcatcctgca ttgggggaaa tagatgtaca
     6961 agcgccattt tgctgtacaa ataacctaca aaaagcccaa cgaaattaat tgcaaataaa
     7021 cgatgattgc tggaaattat gctgatgtta attatttgtg aaatagttaa caagcgttat
     7081 agtttttctg tggtagcaca gaataatgaa aagtgtgtaa agaagggtaa aaaaaaccgg
     7141 atgcgaggca tccggttgaa ataggggtaa acagacattc agaaatgaat gacggtaata
     7201 aataaagtta atgatgatag cgggagttat tctagttgcg agtgaaggtt ttgttttgac
     7261 attcagtgct gtcaaatact taagaataag ttattgattt taaccttgaa ttattattgc
     7321 ttgatgttag gtgcttattt cgccattcca caataatctt aaaaagttcc cttgtattta
     7381 cattttgaaa catctatagc gataaatgaa acatcttaaa agttttagta tcatattcgt
     7441 gttggattat tctgcatttt tggggagaat ggacttgccg actgattaat gagggttaat
     7501 cagtatgcag tggcataaaa aagcaaataa aggcatataa cagagggtta ataacatgaa
     7561 agttaaagta ctgtccctcc tggtcccagc tctgctggta gcaggcgcag caaacgctgc
     7621 tgaagtttac aacaaagacg gcaacaaatt agatctgtac ggtaaagtag acggcttgca
     7681 ctatttctct gacaacaagt cagaagacgg cgaccagacc tatgtacgtc ttggtttcaa
     7741 aggcgaaact caggttactg accagctgac cggttacggc cagtgggaat atcagatcca
     7801 gggcaatacc tctgaagaca acaaagaaaa ctcctggacc cgtgtggcat tcgcaggtct
     7861 gaaattccag gatgtaggtt ctttcgacta cggtcgtaac tacggcgttg tttacgacgt
     7921 aacttcctgg accgacgtac tgccagaatt cggtggcgac acctacggtt ctgacaactt
     7981 catgcagcag cgtggtaacg gcttcgcgac ctaccgtaac accgacttct tcggtctggt
     8041 tgacggtctg aactttgctg ttcagtacca gggcaaaaac ggtagcgtaa gcggcgaagg
     8101 catgaccaac aacggtcgtg gcgctctgcg tcagaacggc gacggtgtcg gcggttctat
     8161 cacttatgat tacgaaggct tcggtatcgg tgctgcagtt tccagctcca aacgtactga
     8221 tgatcaaaat ggtagctaca tcagcaatgg tgtagttcgt aactacatcg gtactggcga
     8281 ccgtgctgaa acctacactg gtggtctgaa atacgacgct aacaacatct acctggctgc
     8341 tcagtacacc cagacctaca acgcaactcg cgtaggttcc ctgggttggg cgaacaaagc
     8401 acagaacttc gaagctgttg ctcagtacca gttcgacttc ggtctgcgtc cgtctgtagc
     8461 atacctgcag tctaaaggta aaaacctggg tgtcatcaat agtcgtaact acgacgacga
     8521 agatatcctg aaatatgttg atgttggcgc gacctactac ttcaacaaaa acatgtccac
     8581 ctatgttgac tacaaaatca acctgctgga cgacaaccag ttcactcgtg acgctggcat
     8641 caacactgat aacatcgtag ctctgggtct ggtttaccag ttctaatctc gattgatatc
     8701 gaacaaaggg cctgcgggcc cttttttcat tgttttcagc gtacaaactc agttttttgg
     8761 tgtactcttg cgaccgttcg catgaggata atcacgtatg gaaataagct ttacccgcgt
     8821 ggcactgctg gctgccgcgc tcttctttgt tggttgcgat caaaaaccac aacccgccaa
     8881 aacccacgct actgaagtta ccgttcttga aggcaaaacc atgggtacct tctggcgtgc
     8941 cagcatcccg ggcattgatg ccaaacgcag tgccgaactt aaagaaaaga ttcagaccca
     9001 gctggacgcc gacgatcagc tgctttcgac ctataaaaaa gattccgcgc tgatgcgctt
     9061 taacgactcg caaagtttgt cgccgtggcc agtaagtgaa gcgatggccg aaatcgtcac
     9121 tacctcgctg cgcattggcg cgaagaccga tggtgcgatg gatattaccg tcgggccgct
     9181 ggtaaatctg tggggctttg gcccggaaca acagccggtt caaattccga gccaggaaca
     9241 gatcgacgag atgaaagcca aaactggttt acagcacctt acggtcatta atcagtcgca
     9301 tcagcaatat ctgcaaaaag acctgccgga tttatatgtc gatctctcta ccgtcggcga
     9361 aggttatgcg gcggatcact tggcacgctt gatggagcag gaagggattt cccgctatct
     9421 ggtgtcggtg ggcggcgcgc tgaacagccg tggtatcaac ggtgaaggcc tgccgtggcg
     9481 ggtagcgatt caaaaaccaa ccgataaaga aaacgcagtt caggctgtgg tggatatcaa
     9541 cggtcatggg attagcacct ctggcagcta ccgtaactat tacgaactgg acggcaaacg
     9601 tctttcccat gttatcgatc cgcaaaccgg gcgtcccatc gaacacaatc tggtatccgt
     9661 gacggtgatt gctccgacgg cgctggaagc cgatgcctgg gatactggct tgatggtact
     9721 cgggccggag aaagccaaag aggttgttcg ccgggaaggg ctggcggttt atatgatcac
     9781 caaagaaggc gatagcttta aaacctggat gtcaccacag tttaaaagct tccttgtcag
     9841 cgaaaaaaat taaagcgcaa gattgttggt ttttgcgtga tggtgaccgg gcagactaaa
     9901 ggctatcctt aaccagggag ctgattatga aaaacgccac atgcttaact gacgatcaac
     9961 gctggcaatc tgtcttagcc cgcgacccga atgccgacgg cgaattcgtt ttcgccgtgc
    10021 gcaccacagg catcttttgc cgtccgtctt gccgcgccag acatgccttg cgggaaaatg
    10081 tctccttcta cgcaaatgcc agcgaggcac tcgccgccgg atttcgcccc tgcaaacgct
    10141 gccaacctga taaagccaat gcccagcaac atcggttgga taaaatcacc cacgcgtgtc
    10201 gactgctgga acaggaaacg cctgtaacgt tggaagcctt agccgaccag gtggcgatga
    10261 gtccatttca tctacatcgg ttgtttaaag cgactaccgg aatgacgcct aaagcctggc
    10321 aacaggcctg gcgcgctcgc cgtttgcgcg aatcgctggc gaaaggggag agcgtgacga
    10381 cgtctattct taacgccgga ttccccgaca gcagcagtta ctaccgcaaa gccgatgaaa
    10441 cgctgggcat gacggctaaa caattccgtc acggtggcga aaatctggcg gtgcgttacg
    10501 cgctggctga ttgtgcgctg ggtcgttgcc tggtggcaga aagcgagcgg gggatttgcg
    10561 cgatattgct gggcgatgat gacgcgacat taatcagcga gttgcagcag atgtttcccg
    10621 ctgccgacaa cgcgcctgcc gatctgacgt ttcagcaaca tgtgcgtgaa gtgatcgcca
    10681 gcctcaatca acgcgatacg ccgctgacgt taccgctgga tattcgcggc actgcttttc
    10741 agcaacaagt ctggcaggca ctgcgcacga taccttgcgg tgaaaccgta ctggctaacg
    10801 ccatcggcaa accgaaagcg gtacgggccg ttgccagcgc ctgtgccgcc aacaagctgg
    10861 ctatcgtaat accctgtcat cgagtggtcg gtggtgatgg cacactttcc ggttaccgct
    10921 ggggcgtgtc tcgtaaagcg caactgctgc gccgcgaagc tgaaaatgag gagaggtaat
    10981 gttggatctg tttgccgatg ctgaaccgtg gcaagagcca ctggcggctg gtgcggtaat
    11041 tttacggcgt tttgctttta acgctgcgga gcaactgatc cgcgatatta atgacgttgc
    11101 cagccagtcg ccgtttcgcc agatggtcac ccccggggga tataccatgt cggtggcgat
    11161 gaccaactgt gggcatctgg gctggacgat ccatcggcaa ggttatctct attcgcccat
    11221 tgatccgcaa acaaataaac cgtggcccgc catgccacaa agctttcatg atttatgtca
    11281 acgtgcggct acggcggcgg gctatccaga tttccagcca gatgcttgtc ttatcaaccg
    11341 ctacgctcct ggcgcgaaac tgtcgctgca tcaggataaa gacgaaccgg atctgcgcgc
    11401 gccaattgtt tctgtttctc tgggcttacc cgcgattttt caatttggtg gcctgaaacg
    11461 taatgatccg ctcaaacgtt tgttgttgga acatggcgat gtggtggtat ggggcggtga
    11521 atcgcggctg ttttatcacg gtattcaacc gttgaaagcg gggttttatc cactcaccac
    11581 cgactgccgc tacaacctga cattccgtca ggcaggtaaa aaagaataaa aataagaatt
    11641 attattgctg tgcgcgcgaa gatgtttaaa ctgcgggctg taattcattg tccgggtttt
    11701 ctgcatggaa cttcttgtac ttgtctggcg gcagtatcgc tggccattta tcagtgtgat
    11761 ggcgctaagc ctcgccagtg cggcattagg cattggctta attgctttta tcaatcagcg
    11821 ccttatcgaa atggcggata ccagtctgct ggtattgccg gagtttctgg gattattgct
    11881 gctgttgatg gcagtcactc tcggatcgca actggcgctc accactttgg ggcatcactt
    11941 cgtttaccga ctgcgtagtg aatttatcaa gcggattctg gatacccacg tcgagcgcat
    12001 tgaacaactc ggtagcgcct cgttgttggc gggattaacc agcgatgtgc gcaatatcac
    12061 cattgctttt gtgcgtcttc cggaactggt gcaggggatc attctcacta tcggttccgc
    12121 ggcgtatctg tggatgctgt cgggcaaaat gttgctggta acggctatct ggatggcgat
    12181 caccatctgg ggtggttttg tactggtggc gcgggtgtac aaacatatgg cgaccctacg
    12241 tgaaaccgaa gacaagctgt acacggattt tcaaactgta cttgaagggc gcaaagagct
    12301 gactctgaac cgggaacgcg ccgagtatgt gtttaacaac ctctacatcc ccgatgcgca
    12361 agagtatcgc catcatatta ttcgcgcaga caccttccat cttagtgccg tgaactggtc
    12421 aaacatcatg atgctgggcg ctatcggcct ggtgttctgg atggcgaaca gtctcggttg
    12481 ggctgatacc aacgttgctg cgacctattc gttgacgctt ttattcctgc gtacgccgct
    12541 gctttcggcg gttggcgcat tgccgacgct gctgatggcg caggtggcgt ttaacaagct
    12601 gaacaaattc gcgctcgcgc ctttcaaagc agagtttccg cgcccgcagg cgtttcccaa
    12661 ctggcaaacg ctggagctgc gtaatgtgac gtttagctat caggataacg cgttttccgt
    12721 tggtccgatt aatctcacca tcaaacgtgg cgagctactg tttctgattg gtggtaacgg
    12781 tagtggaaaa tcgacgctgg cgatgttgtt gacgggcttg tatcagccac aaagcggcga
    12841 aatcttgctg gatggcaaac ctgtcagcgg cgaacaaccg gaagattatc gcaaactgtt
    12901 ttcggcagtg tttaccgatg tctggctttt tgatcaactg ctggggccgg agggtaaacc
    12961 cgctaacccg caactggttg agaagtggct ggcgcagctg aaaatggctc ataagcttga
    13021 gttaagcaac gggcgtattg ttaacctgaa gttatcaaaa gggcagaaaa aacgcgtggc
    13081 gctgttgctg gcgctggcag aagaacgcga tattatcctg ctggatgaat gggcggcgga
    13141 tcaggatcca cacttccgtc gtgagtttta tcaggtgttg ctgccgctga tgcaggagat
    13201 gggtaaaact attttcgcta tcagtcatga tgatcattac tttatccacg ccgaccgcct
    13261 gctggaaatg cgcaatgggc aacttagcga gctgacgggc gaagagcgcg atgccgcttc
    13321 gcgtgatgcc gttgcccgga cggcataata ttacgacgct gacctggcgg actgctgccg
    13381 tcaggtcaat atgctaaaaa tcccttcatt tctaataacc ctataattaa tcaacgaaat
    13441 tataatgttt ctaaaattag aatataattt ataaacatta tttaaatgtt gttacttaag
    13501 tgttaccttt gatgccgcgc aaatctcacc tgcaataaag cgactaaaag taaggcatta
    13561 acaagatgaa aaaagtgact gccatgctct tctcgatggc cgtggggctt aatgccgttt
    13621 cgatggcggc aaaagcgaaa gcgtccgagg agcaggaaac tgatgtactg ttgattggcg
    13681 gcggcattat gagcgccacg ttggggacct atttacgcga gctggagcct gaatggtcga
    13741 tgaccatgct ggagcgcctg gagggtgtcg cgcaggagag ttcgaacggc tggaataacg
    13801 ccggaaccgg gcattctgca ctgatggaac tgaactacac cccgcaaaac gccgatggca
    13861 gtatcagtat tgaaaaagca gtcgccatta acgaagcatt tcagatttcc cgccagttct
    13921 gggcgcacca ggtcgagcgc ggcgtgctgc gtactccgcg ttcatttatc aataccgttc
    13981 cgcatatgag ctttgtctgg ggcgaggata acgttaattt cctgcgcgcc cgttacgccg
    14041 cgttgcaaca aagctcgctg tttcgcggta tgcgttactc tgaagatcac gcgcagatca
    14101 aagagtgggc accgttagtg atggaagggc gcgatccgca acagaaagtg gcagccacgc
    14161 gtacggaaat tggtaccgat gtgaactacg gcgagatcac ccgccagtta attgcttcct
    14221 tgcagaagaa atctaacttc tcgctgcaac tcagcagcga agtccgcgcc ctaaagcgta
    14281 atgacgataa cacctggacc gttaccgttg ccgatctgaa aaatggcact gcacagaaca
    14341 ttcgtgccaa atttgtcttt atcggcgcgg gcggtgcggc gctgaagctg ttacaggaat
    14401 cggggattcc ggaagcgaaa gactacgccg gtttcccggt gggcggacag ttccttgttt
    14461 cggaaaaccc ggacgtggtt aatcaccatc tggcgaaggt ttacggtaaa gcatccgttg
    14521 gcgcaccacc gatgtcggtt ccgcatatcg atacccgcgt tctggacggt aaacgcgtag
    14581 tgctgtttgg gccatttgcc accttctcaa ccaaattcct caaaaacggt tcattgtggg
    14641 atctgatgag ttccaccacc acctctaacg tgatgccgat gatgcacgtc gggctggata
    14701 atttcgatct ggtgaaatat ctggtgagtc aggtgatgtt gagtgaagag gatcgttttg
    14761 aagcgttgaa agagtactat ccgcaggcga aaaaagagga ctggcgtttg tggcaagcgg
    14821 ggcagcgtgt gcagattatc aagcgtgatg ccgataaagg tggtgtactg cgtctgggta
    14881 ctgaagtggt cagtgaccag caagggacca ttgccgcgct cctgggagca tcgccagggg
    14941 cgtcaaccgc cgcgccgatt atgttggatc tgctggaaaa agtatttggc gatcgcgttt
    15001 ccagcccgca atggcaggct acgttgaaag cgatcgttcc gtcttatgga cgcaagctga
    15061 acggtgatgt agcggcaaca gaacgcgagt tgcagtacac cagcgaagtg ctggggctga
    15121 aatacgacaa gccgcaggca gcagatagta cgccaaaacc gcagttgaaa ccgcaacccg
    15181 ttcaaaaaga agtggcggat attgcgttgt aatgatgtgc cacatccggc atggtatgcc
    15241 ggatgtggcg tatactgata agacgcgcca gcgtcgcatc aggcaaccgg ctcgggcgtt
    15301 agatgttgga tgcggcgtaa ccgccttatc caaccaacgg ggtgccgtac ttcacaacag
    15361 tttagcgaac ttctgcgttg tcaattttct cttccgcctt ccagacgcgg tatttcacat
    15421 ctacattgtc tggcgtatac accacgatcg gcagcttgct gttgtaacgc agcattccag
    15481 catcgcccag atacgcggtg acaaatttct tctctttctt gccatccggg caggccatca
    15541 tcgtggaaac cggcgagcta actttatcaa agacataata atcatagccc cagccttcca
    15601 gcgttttgct ttccagcttc ccgccgagac gatgcaaatt gcaatcgact tccagcgtct
    15661 gaccgattaa cagttctact ttcagggtag attcatcttc ttgcggggtt aactgaatca
    15721 cctgacgctt catccctttt tcagcttgtg gataaggcgc gattttttcc agtggctgga
    15781 cgctttctgc cgcccaggcg gaagtggtag cgaaagcggc aaacaatact gcaggtagaa
    15841 tggtcttcat ttttttgctt tccttcttca tttataggtt ttcaccgatg atgtcgctga
    15901 aggttaacat attcataaga tttattaatt tgctttatga ataacttaaa gaatattcag
    15961 acaattttac ctgctctttt agtgttaaat tctgatgaga gaacaaacca gcagaaatat
    16021 ctctggtgaa ttaatcgcta tataaatatg tttataacca tttgaaatgt gagcaaaagc
    16081 ccgtttttgc cacgcttccc gccactcttt tgatcctgct acaggtttta ccccgatcgg
    16141 ggtatgcatc tttgacacat cctttaatat cttagcggtt ataaaaatgg cttattaatt
    16201 atgcggttta tttggtcgct ctcaattttc agagcgcgtt aatgatggaa ggtcaatgtg
    16261 aagattgatg catcccgtcg gggcatactc actggtcgct ggcgcaaagc cagtaacggt
    16321 atccgtccgc cctggtccgg tgatgaatct cattttctga cccattgcac ccgttgcgac
    16381 gcctgtatta atgcttgtga aaacaacatt ctgcaacgcg gcgcgggcgg ctatccgagc
    16441 gttaatttca aaaataacga gtgcagcttc tgttacgctt gcgcgcaggc ttgccccgaa
    16501 tcgctatttt ctccgcgcca caccagggcc tgggatttgc agttcaccat tggggacgcg
    16561 tgcctggcgt atcagtcagt tgaatgccgc cgctgtcagg atagctgtga gccaatggca
    16621 attatctttc gcccgacgct ctccgggatc taccagccgc aacttaatag ccaactttgc
    16681 aacggatgtg gagcatgtgc agccagctgt ccggtatcag ccataactgc ggagtatctc
    16741 catgcacact aactggcaag tttgcagcct ggtcgtgcag gccaaaagcg aacgaatttc
    16801 agacatcagc acccaactga acgcctttcc cggctgtgaa gttgctgtca gcgacgcgcc
    16861 gagcggtcag ttgattgtgg tggtggaagc agaagacagc gaaacgctga tccaaaccat
    16921 tgagtcagta cgcaacgtag agggcgtgct ggcggtgtcg ctggtttatc accagcagga
    16981 agagcaaggt gaggaaacac catgaaactc agtcgtcgta gctttatgaa agctaacgcc
    17041 gttgcggccg ctgcggcggc tgccggtctc agcgtgccgg gcgttgcccg cgccgttgtt
    17101 ggtcagcagg aagccatcaa atgggataaa gcgccgtgcc gtttctgcgg tactggttgc
    17161 ggcgttctgg tcggaacgca gcagggacgt gtggtggcct gtcagggcga cccagacgca
    17221 ccggttaacc gtggcctgaa ctgcattaag ggctatttcc tgcccaagat catgtacggt
    17281 aaagaccgtt tgacgcagcc gctgctgcgt atgaaaaacg gtaaatatga caaagaaggc
    17341 gaatttaccc taatcacctg ggatcaggcc ttcgatgtga tggaagagaa attcaaaacc
    17401 gccctgaaag aaaaagggcc ggaatcgatc ggtatgttcg gttctggtca gtggactatc
    17461 tgggaaggtt atgccgcgtc caagctgttt aaagcgggct tccgttcgaa caacatcgac
    17521 ccgaacgcgc gtcactgtat ggcgtcggca gtagttggct ttatgcgtac ctttggtatg
    17581 gatgagccga tgggctgcta tgacgacatc gagcaggctg acgcgtttgt gctgtggggc
    17641 gcaaacatgg cggagatgca cccgatcctc tggtcgcgca tcactaaccg tcgtctctct
    17701 aatcagaacg tcaccgtggc ggtgctttct acctaccagc atcgtagctt cgagctggcg
    17761 gataacggca tcatctttac gccacagtct gacctggtga tcctgaacta catcgccaac
    17821 tatatcattc aaaacaatgc gataaatcag gacttcttca gcaaacacgt taacctgcgc
    17881 aaaggggcga cggacattgg ctacggttta cgtccgaccc atccgctgga aaaagcagcg
    17941 aagaatccag gttctgacgc ctccgaaccg atgagctttg aagattacaa agccttcgtt
    18001 gccgagtata cgctggaaaa aactgccgaa atgaccggcg tgccgaaaga ccagttagaa
    18061 caactggcgc agctgtatgc cgatccgaac aagaaagtca tctcctactg gacgatgggc
    18121 ttcaaccagc atactcgtgg cgtgtgggct aacaacctgg tctacaacct gcacctgctg
    18181 accggcaaaa tttcccagcc gggttgcggt ccgttctccc tgaccgggca accttctgcg
    18241 tgtggtactg cgcgtgaagt gggcaccttt gctcaccgtc tgcctgcgga catggtggtg
    18301 accaacgaga aacaccgtga tatctgcgag aagaagtgga atatcccgag cggcaccatt
    18361 ccggcgaaaa tcggtctgca cgcggtggca caagaccgtg cgctgaaaga cggcaaactg
    18421 aatgtttact ggaccatgtg taccaacaac atgcaggccg ggccgaacat caatgaagag
    18481 cgtatgccgg gctggcgcga tccgcgcaac ttcatcatcg tctccgatcc gtatccgaca
    18541 gtcagtgcgc tggccgccga cttgatcctg ccgaccgcaa tgtgggtaga gaaagagggc
    18601 gcttacggta acgccgaacg ccgtactcag ttctggcgtc aacaggtaca ggcaccgggc
    18661 gaagcgaaat cggatctctg gcagttagtc cagttctccc gccgcttcaa aactgaagaa
    18721 gtatggccgg aagatctgct ggcgaagaaa ccggaactgc gtggcaaaac gctgtacgaa
    18781 gtgctgtatg ccacaccgga agtgagcaaa ttcccggtat ccgaactggc ggaagatcag
    18841 ctgaacgatg aatcccgcga gctgggcttc tatctgcaaa aagggctgtt cgaagagtac
    18901 gcatggtttg gtcgcggtca cggtcacgat ctggcaccgt tcgatgacta ccacaaagcg
    18961 cgcggtctgc gctggccggt ggtgaacggt aaagaaacgc agtggcgtta cagcgaaggt
    19021 aacgacccgt acgtgaaagc gggcgaaggc tataagttct acggcaaacc ggatggcaaa
    19081 gcggtgatct tcgcactgcc attcgaaccg gcggcggaag caccggatga agagtacgac
    19141 ctgtggctct ctaccggacg cgttctggag cactggcaca ccggcagtat gactcgccgt
    19201 gtaccagaac tgcaccgcgc cttcccggaa gcggtcctgt ttattcaccc gctggatgcg
    19261 aaagcgcgcg atctgcgtcg tggcgacaaa gtgaaagtgg tttctcgccg tggcgaagtg
    19321 atctcgattg tcgaaacgcg cggtcgtaac cgtccgccgc agggcctggt gtacatgccg
    19381 ttcttcgacg ccgcacagct ggttaacaaa ctaacgcagg acgcgaccga tccgctctcg
    19441 aaagagacgg acttcaagaa gtgcgcagtc aaactggaga aggtgtaagc cattatgtcc
    19501 cggtcagcga aacctcaaaa tggtcgccgc cgctttctgc gcgatgttgt tcgcacagca
    19561 ggcgggctgg ctgccgtggg tgtggcgctg gggttacaac agcaaaccgc acgcgcatct
    19621 ggcgtgcggt tgcgcccgcc cggagccata aacgagaacg cctttgccag tgcctgtgtg
    19681 cgttgcggtc agtgtgttca ggcttgccct tacgacacct taaaactggc gacgctggcc
    19741 tctggtctgt cggcgggcac gccatatttt gtcgcacggg atattccttg cgaaatgtgt
    19801 gaggacattc cgtgcgccaa agtgtgcccg agcggtgcgc tggatcgtga gatcgaatcg
    19861 atcgacgacg cgcggatggg gctggcggta ctggtggacc aggaaaactg tctcaacttt
    19921 caggggctgc gctgcgatgt ttgttatcgc gaatgcccga aaattgatga ggccatcacc
    19981 ctggagctgg agcgcaacac gcgtaccggt aagcacgccc gctttctgcc gacggttcac
    20041 agagacgcct gtaccggttg cggtaagtgc gaaaaagtgt gcgtgctgga acaaccggca
    20101 atcaaggtgt taccgctgtc actggctaaa ggggagttag gtcaccatta ccgcttcggc
    20161 tggctggagg ggaacaatgg caaatcgtaa acgtgacgcc gggcgcgagg cgctggagaa
    20221 aaaaggctgg tggcgcagtc accgttggct ggtgttacgt cgcctttgtc agttcttcgt
    20281 gctggggatg tttttgagcg gtccgtggtt tggtgtgtgg atcttacacg gtaactacag
    20341 cagtagcctg ttattcgaca ccgttccgct gaccgatccg ctgatgacgc tgcaaagtct
    20401 tgccagcggt catctgcctg ccacggtggc gttgaccggt gcggtgatta tcaccgtgct
    20461 ctacgccctg gcaggaaagc gattattttg cagctgggtc tgcccgctga atccgattac
    20521 cgacttagcg aactggttac gcaggcgctt tgacctcaat cagtctgcga cgatccctcg
    20581 ccacattcgc tacgtgctgt tggtggtcat tctgctggga tcggccttaa ctggcacgct
    20641 catctgggaa tggatcaacc ccgtatctct gatggggcgc agcctggtag tgggcttcgg
    20701 cagcggcgcg ctgcttattc tcgcgctgtt tttatttgat ctactggtcg ttgaacacgg
    20761 ctggtgcggg cacatttgtc cggttggcgc gctgtatggc gtgctgggta gcaaaggtgt
    20821 gattaccgtt gcggccaccg atcggcagaa atgtaaccgc tgtatggatt gttttcatgt
    20881 ttgcccggaa ccgcgtgtgc tacgtgcccc ggtgctggat gaacaaagcc cggtgcaggt
    20941 caccagccgc gattgcatga cgtgcggtcg ctgcgtggat gtctgttctg aggatgtatt
    21001 tacaataact acacgatgga gttcgggagc gaaatcatga aaagccatga cctgaagaaa
    21061 gcgctgtgtc aatggacggc gatgctggcc ctggtggtaa gcggcgcggt ttgggcggct
    21121 aatggcgtcg attttagcca gtcgccggaa gtatccggga cacaggaagg ggccattcgg
    21181 atgccaaaag agcaggaacg gatgccgctg aactatgtga atcagccgcc aatgatcccg
    21241 catagcgttg aaggttatca ggtaacgacc aataccaacc gctgcttgca gtgccacggt
    21301 gtcgaaagtt atcgcaccac tggcgcgccg cgcattagtc ctactcactt tatggacagc
    21361 gacggcaaag tgggcgcgga agtggctccg cgtcgttatt tctgtctgca atgtcacgta
    21421 ccgcaggccg ataccgcgcc aatcgtgggg aataccttta ccccatcaaa aggttacggg
    21481 aaataagagg ttattatggg aaattctgac cgtaagcctg gtctgattaa gcgcctgtgg
    21541 aaatggtggc gtacccccag ccgtctggcg ctggggacgc tgctgttgat cggttttgtt
    21601 ggcggcatcg tcttctgggg tggctttaac accgggatgg aaaaagccaa taccgaagag
    21661 ttctgcatta gctgccacga aatgcgcaac acggtatatc aggaatacat ggattccgtg
    21721 cactacaaca accgtagcgg cgtccgtgcg acctgtccgg attgtcacgt tccgcacgag
    21781 tttgtgccga agatgatacg caagctcaaa gcaagtaaag agctgtatgg taaaattttt
    21841 ggcgttattg acacgccgca gaaatttgaa gctcatcgtc tgacgatggc acagaatgag
    21901 tggcggcgca tgaaggacaa taactcgcag gagtgccgta actgtcacaa cttcgagtat
    21961 atggatacaa ccgcccagaa atcggttgcc gcgaagatgc atgaccaggc ggtgaaagat
    22021 gggcaaacct gtattgattg ccataaaggg atagcgcaca agctgcccga tatgcgtgaa
    22081 gtcgagccag gtttttaaca gggttattgc gtgggtatgc ttgaagccag agagttactt
    22141 tgtgagcggg atgaacgaac cttatttagt ggcttgtcat ttacgctgaa cgcaggagag
    22201 tgggtacaaa tcaccggtag caacggcgcg gggaagacaa cgcttctccg tttgctgacg
    22261 gggttgtctc gccctgacgc aggcgaggtt ctctggcaag ggcagccctt gcatcaggta
    22321 cgcgacagct accatcaaaa cctgttatgg ataggccatc agccggggat caaaacccgg
    22381 ctgacggcgt tagaaaatct gcacttttat catcgcgatg gcgataccgc acaatgtctg
    22441 gaagccctgg cgcaggccgg gcttgccgga ttcgaagata ttcctgtaaa tcagctctcg
    22501 gccgggcaac aacgccgcgt cgctttagcg cgtctgtggc tgacccgtgc cacgttatgg
    22561 atcctcgacg agccttttac cgcgattgac gttaacggcg tcgatcgtct gacccagcgt
    22621 atggcgcagc atacggagca gggggggatt gtgattctga ctacccacca gccgctcaac
    22681 gttgctgaaa gtaaaattcg ccgcatttca ctgacgcaaa cgagggccgc atgatgttct
    22741 ggcgcatttt ccgtcttgag ctgcgtgtag cgtttcgcca tagcgccgaa atcgccaacc
    22801 cgctgtggtt cttcctgatt gtaattaccc tttttccgct cagtatcggt ccggagccgc
    22861 aactgctggc gcgtattgca ccgggcatta tctgggttgc tgcgctgctt tcatccttgc
    22921 tggcgctgga acgactgttc cgtgacgatt tgcaggacgg cagtcttgaa caattgatgt
    22981 tgttgccgtt acccttgccc gccgttgtgc tggcgaaggt gatggcgcac tggatggtaa
    23041 ccggtctgcc gttactcatc ctttcgccac tggtagcaat gctactggga atggatgttt
    23101 atggctggca agtgatggcg ctgacgctgc tgctgggaac gcctacgctt ggctttctcg
    23161 gtgcaccggg tgtggcgttg acagtgggac ttaagcgcgg tggtgtgctg ctcagcatac
    23221 tggtgttacc gctgactatc ccattactca tctttgccac cgccgcgatg gacgcggctt
    23281 ccatgcattt gcccgttgac gggtatctgg caattttagg cgcgttgctg gcaggcaccg
    23341 cgacattaag tccttttgcg acggcggcag cgttacgaat cagcattcaa taacgctgga
    23401 ttactgattt ttgttcgagt ctggtatcga aactatgtgg aaaacactgc atcaactggc
    23461 gatcccacca cggctgtatc aaatctgtgg ctggtttata ccgtggctgg caattgccag
    23521 tgtggtcgtg cttaccgtcg gctggatctg gggattcggc tttgctccgg ctgattatca
    23581 gcagggaaat agctaccgca ttatctacct gcatgtgcct gcggcgatct ggtcgatggg
    23641 tatttatgca tcaatggcgg tggcggcgtt tattggcctt gtctggcaga tgaaaatggc
    23701 caacctggcg gtggcggcga tggcccccat tggtgccgtg tttaccttta ttgccctggt
    23761 taccggctct gcatggggaa aaccgatgtg gggcacctgg tgggtatggg atgcacgtct
    23821 gacttctgaa ctggtgctgc tgtttttgta tgtgggtgtg attgccctgt ggcacgcctt
    23881 cgacgaccgc cgtctggcgg gccgtgcggc aggtatcctg gtgctgattg gcgtggtgaa
    23941 tctgccgatt attcattact ccgtggagtg gtggaacacc ctgcatcagg gatcaacgcg
    24001 gatgcagcaa agtatcgatc cggcgatgcg ttcgccgctg cgctggtcga tttttggctt
    24061 cctgctcctg tctgccacgc tgacgctgat gcggatgcgt aatttgattt tgctgatgga
    24121 aaaacgccgt ccgtgggtga gtgaactgat actgaaaaga ggccgtaaat gacccttgca
    24181 tttgcttcct ggaatgaatt tttcgcaatg ggcggttacg ccttttttgt ctggctggcg
    24241 gtggtgatga ccgttattcc gctggtggtt ttggtcgtgc actcggtgat gcagcatcgc
    24301 gcaattctgt gtggtgtgga gcaacagcgg gcgcgtgagg cgcgtttacg tgctgcgcaa
    24361 cagcaggagg ctgcatgaat attcgccgta aaaaccgctt gtggattgcc tgtgctgtgt
    24421 tggcaggttt ggcgctgacc atcggtctgg tgctgtatgc gctgcgctcg aatatcgatc
    24481 tcttttatac gccgggggaa attctctacg gcaagcgtga aactcagcaa atgccggaag
    24541 tcggtcagcg tctgcgcgtt ggcgggatgg tgatgccggg tagtgtgcag cgcgatccca
    24601 attcgctgaa agtgaccttc accatttacg acgctgaagg ctcagtggat gtctcttacg
    24661 aaggcatttt gccggatctg ttccgtgaag ggcagggcgt tgtggtgcag ggcgagctgg
    24721 aaaaaggcaa tcatatcctc gcgaaagaag tgctggcgaa acacgacgaa aactacacgc
    24781 cgccagaagt tgagaaagcg atggaagcta accaccgtcg cccggcgagt gtttataagg
    24841 acccagcatc atgatgccgg aaattggaaa cgggctgctg tgcctggcgc tgggaattgc
    24901 gctgctgctg tccgtgtatc cgctatgggg cgtggcgcgc ggagatgcgc gcatgatggc
    24961 gtcttcccgc ttgtttgcct ggctgctgtt tatgtctgtg gctggcgcat ttctggtgct
    25021 ggtcaatgct ttcgtggtca acgactttac cgtcacctat gttgccagca actccaatac
    25081 ccagcttccg gtgtggtatc gcgtggcggc tacctggggc gcgcatgaag gttcgcttct
    25141 gctgtgggtg ctgctgatga gcggctggac ctttgcggtg gcgattttta gtcagcgtat
    25201 tccgctggat attgtggccc gtgtactggc gataatgggg atggtcagcg tcggcttttt
    25261 gctgttcatt ctctttacct ctaacccgtt ctcacgcacg ctgccgaact tcccaattga
    25321 agggcgcgat cttaacccgc tgttacagga tccggggctg atcttccatc cgcctctgct
    25381 ttatatgggg tacgtgggtt tctcggtggc gtttgctttt gccattgctt ctttgctgag
    25441 cgggcgtctg gacagcactt atgcgcgttt tactcgcccg tggacgctgg cggcgtggat
    25501 tttcctgacg ctcggcattg tgctcggttc cgcatgggcc tattacgaac tcggctgggg
    25561 gggctggtgg ttctgggatc cggtagaaaa cgcctcgttt atgccgtggc tggtggggac
    25621 tgcgctgatg cactcactgg cggtcactga acaacgcgcc agcttcaaag cgtggacatt
    25681 actgctggca atcagtgcct tctcgttgtg tctgctgggg actttcctgg tgcgttccgg
    25741 cgtgctggta tcggtacacg cgtttgcctc tgatccggca cgcggtatgt ttatcctcgc
    25801 ctttatggta ctggtgattg gtggttcgct gctgctgttt gccgcgcgtg gacacaaagt
    25861 tcgctcacgc gtaaacaatg cgctgtggtc gcgggaatct ctgctgttag cgaacaacgt
    25921 tttgttggtc gccgcgatgc tggtggtatt actggggacg ctgctgccgc tggtgcacaa
    25981 gcaactggga ctgggcagta tttcgattgg cgaaccgttc ttcaacacca tgtttacctg
    26041 gctgatggtg ccgtttgcgc tgctgcttgg tgtcggtcct ctggtgcgct gggggcgcga
    26101 tcgcccacgt aaaatccgca atttattgat tatcgccttc atctcaacgc tggtgctgtc
    26161 gctgctgctg ccgtggctgt tcgaaagcaa agttgtggcg atgacggtgc tcggcctggc
    26221 aatggcctgc tggattgctg tgctggcaat tgcggaagct gcgctgcgta tttcacgtgg
    26281 cacgaaaacc accttcagtt attggggaat ggtggcggct cacctggggc tggcagtgac
    26341 aattgttggt attgccttta gccagaacta tagcgttgag cgtgatgtgc gcatgaagtc
    26401 cggcgatagc gtcgatattc atgaatatcg cttcaccttc cgtgatgtca aagaggtgac
    26461 tggcccgaac tggcgcggcg gtgtggcgac tattggcgta acgcgagagg gtaaaccgga
    26521 aacggtgctg tatgcggaaa aacgttatta caacactgcc gggtcgatga tgaccgaagc
    26581 ggcgattgac ggcggcatca cgcgtgacct gtacgccgcg ctcggtgaag agctggaaaa
    26641 cggcgcgtgg gccgtgcgtc tttactacaa accgtttgtt cgctggattt gggcgggcgg
    26701 gctgatgatg gcgttgggcg gactgctgtg tctgtttgat cctcgctatc gtaagcgcgt
    26761 gagtccgcaa aaaactgcgc cggaggctgt atgaagcgca aagtattgtt aattccgttg
    26821 attatcttcc tggcgattgc cgcggcgctg ctgtggcagc tggcgcgtaa tgccgaaggg
    26881 gatgatccga ccaatctgga atcggcgctc attggcaagc cagtgccgaa gtttcgcctc
    26941 gaatcactgg acaatccggg gcagttttat caggcggatg tgctgactca gggcaaacct
    27001 gtgctgctta acgtttgggc tacctggtgt ccgacctgcc gtgcggaaca tcaatatctg
    27061 aatcagcttt ctgcgcaggg cattcgcgtg gtcggcatga actataaaga cgatcgccag
    27121 aaggcaataa gctggctgaa agagctgggc aatccttacg cgctaagcct gtttgatggc
    27181 gatggcatgt tagggctgga tctcggtgtc tatggcgcgc cagaaacgtt cctcatcgac
    27241 ggcaacggca tcattcgcta tcgccatgcg ggcgatctca atcctcgcgt ctgggaagaa
    27301 gagatcaagc cgctgtggga gaaatacagt aaggaggccg cacaatgagg tttttattgg
    27361 gcgtgctgat gctgatgatc tccggctcag cgctggcgac catcgacgtg ttgcagttta
    27421 aggatgaagc gcaggagcag cagttccgcc aactcactga agaactacgc tgcccgaaat
    27481 gccagaacaa cagcattgcc gattccaact cgatgattgc caccgacctg cgccagaaag
    27541 tgtatgaact gatgcaggaa ggtaaaagta aaaaagagat tgtcgattat atggtggcgc
    27601 gttacggcaa cttcgtcact tacgatccgc cgttaacgcc gctgaccgtg ctgctgtggg
    27661 tgcttccggt agtggctatt ggcattggcg gttgggtcat ttacgcccgt tcgcggcgtc
    27721 gggtacgcgt ggtgccggac gcgtttcctg aacaaagcgt gccggaaggt aagcgtgccg
    27781 gatatattgt ttatctgccg ggtattgtgg tggcgttaat tgtggctggc gtcagctact
    27841 accagactgg caattatcag caggtgaaaa tctggcagca ggccacggca caggctccgg
    27901 cgttgctgga cagggcgctg gatccgaaag ccgatccgct caacgaagaa gagatgtcgc
    27961 gtcttgcgct ggggatgcgt actcaactgc aaaaaaatcc gggagatata gaaggctgga
    28021 ttatgttggg ccgcgttggc atggcgctgg gtaacgccag tatcgccacc gatgcatacg
    28081 ctactgcgta tcgcctcgat ccgaaaaaca gtgatgccgc actgggttat gctgaagcgt
    28141 tgacacgttc atctgatccc aacgacaacc gcctcggtgg tgaactgctg cgccagttgg
    28201 tgagaacgga ccatagcaat atccgtgtgt taagcatgta tgcgtttaat gcctttgagc
    28261 agcagcgatt tggcgaagcc gttgccgcgt gggagatgat gttgaaactc ttatctgcca
    28321 acgatactcg ccgtgcggtg attgaacgta gtatcgcgca ggcgatgcaa catttgtcgc
    28381 cgcaggagag taaataaaaa gaggcccgat ggtgatgcca tcgggctatt tttattgtgc
    28441 cccgcgttgt tgcaggaaca gaatggtggc tgccacgcgt gagcggacat tgagtttgcg
    28501 cagcagattg cgaatatgta cttttactgt ctgctctgaa atattcaaca ccgaggcaat
    28561 ctgtttattt gacagcccct gtgccagctc gtgcagaaca tccagctcgc gctccgtcag
    28621 cacgctgaag ggatcttctt ccgcgccaaa catttcacgt tcacgtaagt actgattgac
    28681 gcgttcgcta aagactttgc tgcctttcgc tccagcacga attgcttcca gcaatacttc
    28741 cgggtcgctg tctttcaaca gataaccgtc tgcgcctgcg tctatcagcg caaagacatc
    28801 gctggaggca tctgatacgg tcaggataat aatttgcgcg gtaacgccat ccctgcgcaa
    28861 ggcattgagg gtatccaggc cactcatacc tttcatattg agatccagca agatcacgtc
    28921 gatatccagt ctatttgcca gatcgatcgc gctcgcgccg tcgcccgctt cggcgaccac
    28981 ttcaaagcta ggatcaagct ccagtaactg acgaacaccg cgtcgcataa gtggatgatc
    29041 atccacaatc atcacctgaa aaggcgttgc ttcaggcata gtagtctcca ggggttttat
    29101 tagaatcatt atgtttgagc gtagcgttgg taacgctacc aggcgcgtga atgttacccc
    29161 attttatgta tggacatgta gtgaaaacta caaccttgtc gttcgctttg gcatcatttt
    29221 cattataaag acggaatttt gcatcagctt c
//
LOCUS       DADMJB010000032        29058 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.032, whole genome shotgun sequence.
ACCESSION   DADMJB010000032 DADMJB010000000
VERSION     DADMJB010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29058
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.032"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            162..605
                     /locus_tag="JN078_001297"
     CDS             162..605
                     /locus_tag="JN078_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004997737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HAY9040561.1"
                     /translation="MDLALVTGQREGDLAAMRWEDIRDGRLYVEQQKTGAKIRISLPT
                     TISRLNLTLTDVLDNLKKINGKNEKLLGGKTARTIAAQFRIARDTSGLKWEGDPPPFH
                     EIRSLSGRLHSAEKGSDFTQALLGHRSSSMTDKYRDGRGREWKDI"
     gene            841..1659
                     /locus_tag="JN078_001298"
     CDS             841..1659
                     /locus_tag="JN078_001298"
                     /EC_number="3.1.3.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphatase"
                     /protein_id="HAY9040562.1"
                     /translation="MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTG
                     RHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVNKALQLIEMLNEHHI
                     HGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFAL
                     THDDMPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENV
                     VAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI"
     gene            complement(1660..2718)
                     /gene="modC"
                     /locus_tag="JN078_001299"
     CDS             complement(1660..2718)
                     /gene="modC"
                     /locus_tag="JN078_001299"
                     /EC_number="7.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum ABC transporter ATP-binding protein
                     ModC"
                     /protein_id="HAY9040563.1"
                     /translation="MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAI
                     SGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMA
                     KSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLD
                     IPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWG
                     SSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQ
                     ASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELA
                     IKPGLWLYAQIKSVSITA"
     gene            complement(2721..3410)
                     /gene="modB"
                     /locus_tag="JN078_001300"
     CDS             complement(2721..3410)
                     /gene="modB"
                     /locus_tag="JN078_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HAY9040564.1"
                     /translation="MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGK
                     ALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVM
                     SFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARS
                     LGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEW
                     LARISRERAGR"
     gene            complement(3410..4183)
                     /gene="modA"
                     /locus_tag="JN078_001301"
     CDS             complement(3410..4183)
                     /gene="modA"
                     /locus_tag="JN078_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY9040565.1"
                     /translation="MARKWLNLFAGAALSFAVAGNTLADEGKITVFAAASLTNAMQDI
                     ATQYKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTASRQ
                     TLLGNSLVVVAPKASEQKDFIIDSTTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKL
                     GAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVVSKGVKVVATFPEDSHKKV
                     EYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTTK"
     gene            complement(4349..4498)
                     /locus_tag="JN078_001302"
     CDS             complement(4349..4498)
                     /locus_tag="JN078_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux pump-associated protein, AcrZ
                     family"
                     /protein_id="HAY9040566.1"
                     /translation="MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQ
                     PGQNH"
     gene            4627..5415
                     /gene="modE"
                     /locus_tag="JN078_001303"
     CDS             4627..5415
                     /gene="modE"
                     /locus_tag="JN078_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-dependent transcriptional regulator"
                     /protein_id="HAY9040567.1"
                     /translation="MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGIS
                     YKSAWDAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYDLLAQIQQKAFDV
                     LSDDDALPLNSLLAAISRFSLQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKV
                     AITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNANNQLPGIISHIERGAEQCE
                     VLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIATLC"
     gene            5483..6955
                     /gene="modF"
                     /locus_tag="JN078_001304"
     CDS             5483..6955
                     /gene="modF"
                     /locus_tag="JN078_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter ATP-binding protein
                     ModF"
                     /protein_id="HAY9040568.1"
                     /translation="MSSLQILQGTFRLSDTKTLQLPQLTLNAGDSWAFVGSNGSGKSA
                     LARALAGELPLLKGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLGPGEDDTGRTT
                     AEIIQDEVKDAPRCMQLAQQFGITALLDRRFKYLSTGETRKILLCQALMSEPDLLILD
                     EPFDGLDVASRQQLAERLASLHQSGITLVLVLNRFDEIPEFVQFAGVLADCTLAETGA
                     KEELLQQALVAQLAHSEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPIL
                     NNLSWQVNPGEHWQIVGPNGAGKSTLLSLVTGDHPQGYSNDLTLFGRRRGSGETIWDI
                     KKHIGYVSSSLHLDYRVSTTVRNVILSGYFDSIGIYQAVSDRQQKLVQQWLDILGIDK
                     RTADAPFHSLSWGQQHLALIVRALVKHPTLLILDEPLQGLDPLNRQLIRRFVDVLISE
                     GETQLLFVSHHAEDAPACITHRLEFVPDGGLYRYVLTKIY"
     gene            7216..8232
                     /gene="galE"
                     /locus_tag="JN078_001305"
     CDS             7216..8232
                     /gene="galE"
                     /locus_tag="JN078_001305"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308814.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HAY9040569.1"
                     /translation="MRVLLTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVI
                     ERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVN
                     GTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL
                     TDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIF
                     GNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGIGSSVLDVVNAF
                     SKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQ
                     GYPD"
     gene            8242..9288
                     /gene="galT"
                     /locus_tag="JN078_001306"
     CDS             8242..9288
                     /gene="galT"
                     /locus_tag="JN078_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HAY9040570.1"
                     /translation="MTQFNPVDHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQV
                     LPAHDPDCFLCAGNVRVTGDKNHDYTGTYVFTNDFAALMSDTPDAPESNDPLMRCQSA
                     RGTSRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKTYPWVQVFENKGAAMGC
                     SNPHPHGQIWANSFLPNEAEREDRLQKEYFAEQKSPMLVDYVQRELADGSRTVVETEH
                     WLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPY
                     SMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAER
                     LRAVSDIHFRESGV"
     gene            9292..10440
                     /gene="galK"
                     /locus_tag="JN078_001307"
     CDS             9292..10440
                     /gene="galK"
                     /locus_tag="JN078_001307"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001713229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HAY9040571.1"
                     /translation="MSLKEKTQSLFANAFGYPATHTIQAPGRVNLIGEHTDYNDGFVL
                     PCAIDYQTVISCAPRDDRKVRVMAADYENQLDEFSLNAPIVAHENYQWANYVRGVVKH
                     LQLRNNSFGGVDMVISGNVPQGAGLSSSASLEVAVGTVLQQLYHLPLDGAQIALNGQE
                     AENQFVGCNCGIMDQLISALGKKDHALLIDCRSLGTKAVSMPKGVAVVIINSNFKRTL
                     VGSEYNTRREQCETGARFFQQPALRDVTIEEFNAVAHELDPIVAKRVRHILTENARTV
                     EAASALEQGDLKRMGELMAESHASMRDDFEITVPQIDTLAEIVKAVIGDKGGVRMTGG
                     GFGGCIVALIPEELVPAVQQAVAEQYEAKTGIKETFYVCKPSQGAGQC"
     gene            10434..11474
                     /gene="galM"
                     /locus_tag="JN078_001308"
     CDS             10434..11474
                     /gene="galM"
                     /locus_tag="JN078_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-epimerase"
                     /protein_id="HAY9040572.1"
                     /translation="MLNETPALAPDGQPYRLLTLRNNAGMVVTLMDWGATLLSARIPL
                     SDGSVREALLGCASPECYQDQAAFLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQ
                     LHGGPEGFDKRRWQIVNQNDRQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITY
                     RATVDKPCPVNMTNHVYFNLDGEQSDVRNHKLQILADEYLPVDEGGIPHDGLKSVAGT
                     SFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQAKGDGKKVAAHVWSADEKLQLKVYT
                     TAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPNHPEWPQPDCFLRPGEE
                     YSSLTEYQFIAE"
     gene            11676..12428
                     /gene="gpmA"
                     /locus_tag="JN078_001309"
     CDS             11676..12428
                     /gene="gpmA"
                     /locus_tag="JN078_001309"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000301556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HAY9040573.1"
                     /translation="MAVTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKL
                     LKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAE
                     TAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDR
                     VIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLVYEF
                     DENFKPLKRYYLGNADEIAAKAAAVANQGKAK"
     gene            complement(12586..13638)
                     /gene="aroG"
                     /locus_tag="JN078_001310"
     CDS             complement(12586..13638)
                     /gene="aroG"
                     /locus_tag="JN078_001310"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001109196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HAY9040574.1"
                     /translation="MNYQNDDLRIKEIKELLPPVALLEKFPATENAANTVAHARKAIH
                     KILKGNDDRLLVVIGPCSIHDPVAAKEYATRLLALREELKDELEIVMRVYFEKPRTTV
                     GWKGLINDPHMDNSFQINDGLRIARKLLLDINDSGLPAAGEFLDMITPQYLADLMSWG
                     AIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHS
                     AIVNTSGNGDCHIILRGGKEPNYSAKHVAEVKEGLNKAGLPAQVMIDFSHANSSKQFK
                     KQMDVCADVCQQIAGGEKAIIGVMVESHLVEGNQSLESGEPLAYGKSITDACIGWEDT
                     DALLRQLANAVKARRG"
     gene            13954..14334
                     /locus_tag="JN078_001311"
     CDS             13954..14334
                     /locus_tag="JN078_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040575.1"
                     /translation="MKMTKLATLFLTATLSLASGAALAADSGAQTNNGQANAATDAGQ
                     VAPDARENVAPNNVDNNGVNTGSGGTMLHSDGSSMNNDGMTKDEEHKNTMCKDGRCPD
                     INKKVQTGDGINNDVDTKTDGTTQ"
     gene            14448..15389
                     /gene="zitB"
                     /locus_tag="JN078_001312"
     CDS             14448..15389
                     /gene="zitB"
                     /locus_tag="JN078_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family zinc transporter ZitB"
                     /protein_id="HAY9040576.1"
                     /translation="MAHSHSHTSSHLPEDNNARRLLYAFGVTAGFMLVEVVGGFLSGS
                     LALLADAGHMLTDTAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVIT
                     ILIVWEAIERFRTPRPVEGGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHV
                     LGDLLGSVGAIIAALIIIWTGWTPADPILSIVVSLLVLRSAWRLLKDSVNELLEGAPV
                     SLDIAELKRRMCREIPEVRNVHHVHVWMVGEKPVMTLHVQVIPPHAHDALLDQIQHYL
                     MDHYQIEHATIQMEYQPCHGPDCHLNEGVSGHSHHHH"
     gene            complement(15386..16105)
                     /locus_tag="JN078_001313"
     CDS             complement(15386..16105)
                     /locus_tag="JN078_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HAY9040577.1"
                     /translation="MDFFSVQNILVHIPIGAGGYDLSWIEAVGTIAGLLCIGLASLEK
                     ISNYFFGLINVTLFGIIFFQIQLYASLLLQVFFFAANIYGWYAWSRQTSQNEAELKIR
                     WLPLPKALSWLAVCVVSIGLMTVFINPVFAFLTRVAVMIMQALGLQVVMPELQPDAFP
                     FWDSCMMVLSIVAMLLMTRKYVENWLLWVIINVISVVIFALQGVYAMSLEYIILTFIA
                     LNGSRMWINSARERGSCALSH"
     gene            complement(16143..17186)
                     /gene="nadA"
                     /locus_tag="JN078_001314"
     CDS             complement(16143..17186)
                     /gene="nadA"
                     /locus_tag="JN078_001314"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HAY9040578.1"
                     /translation="MSVMFDPDTAIYPFPPKPTPLSIDEKAYYREKIKRLLKERNAVM
                     VAHYYTDPEIQQLAEETGGCISDSLEMARFGAKHPASTLLVAGVRFMGETAKILSPEK
                     TILMPTLQAECSLDLGCPVEEFNAFCDAHPDRTVVVYANTSAAVKARADWVVTSSIAV
                     ELIDHLDSLGEKIIWAPDKHLGRYVQKQTGGDILCWQGACIVHDEFKTQALTRLQEEY
                     PDAAILVHPESPQAIVDMADAVGSTSQLIAAAKTLPHQRLIVATDRGIFYKMQQAVPD
                     KELLEAPTAGEGATCRSCAHCPWMAMNGLQAIAEALEQEGSNHEVHVDERLRERALVP
                     LNRMLDFAATLRG"
     gene            complement(17435..17510)
                     /locus_tag="JN078_001315"
     tRNA            complement(17435..17510)
                     /locus_tag="JN078_001315"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17475..17477),aa:Lys,seq:ttt)
     gene            complement(17657..17732)
                     /locus_tag="JN078_001316"
     tRNA            complement(17657..17732)
                     /locus_tag="JN078_001316"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17697..17699),aa:Lys,seq:ttt)
     gene            complement(17736..17811)
                     /locus_tag="JN078_001317"
     tRNA            complement(17736..17811)
                     /locus_tag="JN078_001317"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17776..17778),aa:Val,seq:tac)
     gene            complement(17863..17938)
                     /locus_tag="JN078_001318"
     tRNA            complement(17863..17938)
                     /locus_tag="JN078_001318"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17903..17905),aa:Lys,seq:ttt)
     gene            complement(17941..18016)
                     /locus_tag="JN078_001319"
     tRNA            complement(17941..18016)
                     /locus_tag="JN078_001319"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17981..17983),aa:Val,seq:tac)
     gene            complement(18052..18127)
                     /locus_tag="JN078_001320"
     tRNA            complement(18052..18127)
                     /locus_tag="JN078_001320"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18092..18094),aa:Lys,seq:ttt)
     gene            complement(18292..19083)
                     /gene="cpoB"
                     /locus_tag="JN078_001321"
     CDS             complement(18292..19083)
                     /gene="cpoB"
                     /locus_tag="JN078_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein CpoB"
                     /protein_id="HAY9040579.1"
                     /translation="MSSNFRHQLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQ
                     LERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLS
                     SGGAAAQSTSSDQSGAAASTTPTADAGTANAGAPVKSGDANTDYNAAIALVQDKSRQD
                     DAMVAFQNFIKNYPDSTYLPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD
                     AMFKVGVIMQDKGDTAKAKAVYQQVISKYPGTDGAKQAQKRLNAM"
     gene            complement(19093..19614)
                     /gene="pal"
                     /locus_tag="JN078_001322"
     CDS             complement(19093..19614)
                     /gene="pal"
                     /locus_tag="JN078_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HAY9040580.1"
                     /translation="MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMD
                     ANGGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYK
                     VTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE
                     AAYSKNRRAVLVY"
     gene            complement(19649..20941)
                     /gene="tolB"
                     /locus_tag="JN078_001323"
     CDS             complement(19649..20941)
                     /gene="tolB"
                     /locus_tag="JN078_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001646851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HAY9040581.1"
                     /translation="MKQALRVAFGFLILWASVLHAEVRIVIDSGVDSGRPIGVVPFQW
                     AGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPSAWSALGIDAVVVG
                     QVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK
                     GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT
                     FESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA
                     SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQN
                     QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYS
                     SSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL"
     gene            complement(21074..22255)
                     /gene="tolA"
                     /locus_tag="JN078_001324"
     CDS             complement(21074..22255)
                     /gene="tolA"
                     /locus_tag="JN078_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HAY9040582.1"
                     /translation="MSKATEQNDKLKRAIIISAVLHVILFAALIWSSFDENIEASAGG
                     GGGSSIDAVMVDSGAVVEQYKRMQSQESSAKRSDEQRKMKEQQAAEELREKQAAEQER
                     LKQLEKERLAAQEQKKQAEEAAKQAELKQKQAEEAAAKAAADAKAKAEADAKAAEEAA
                     KKAAADAKKKAEAEAAKAAAQKKAEAAAAALKKKAEAAEAAAAEARKKAATEAAEKAK
                     AEAEKKAAAEKAAADKKAAADKKAAEKAAAEKAAADKKAAAEKAAAEADDIFGELSSG
                     KNAPKTGGGAKGNNASPAGSGNSKNNGASGADINNYAGQIKSAIESKFYDASSYAGKT
                     CTLRIKLAPDGMLLDIKPEGGDPALCQAALAAAKLAKIPKPPSQAVYEVFKNAPLDFK
                     P"
     gene            complement(22320..22748)
                     /gene="tolR"
                     /locus_tag="JN078_001325"
     CDS             complement(22320..22748)
                     /gene="tolR"
                     /locus_tag="JN078_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin uptake protein TolR"
                     /protein_id="HAY9040583.1"
                     /translation="MARARGRGRRELKSEINIVPLLDVLLVLLLIFMATAPIITQSVE
                     VDLPDATESQAVSSNDNPPVIVEVSGIGQYTVVVEKDRLERLPPEQVVAEVSSRFKAN
                     PKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMTQPI"
     gene            complement(22752..23444)
                     /gene="tolQ"
                     /locus_tag="JN078_001326"
     CDS             complement(22752..23444)
                     /gene="tolQ"
                     /locus_tag="JN078_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolQ"
                     /protein_id="HAY9040584.1"
                     /translation="MTDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNA
                     AAREAEAFEDKFWSGIELSRLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPE
                     AVVEGASRAMRISMNRELENLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVK
                     QATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILH
                     RQAFTVSESNKG"
     gene            complement(23441..23845)
                     /gene="ybgC"
                     /locus_tag="JN078_001327"
     CDS             complement(23441..23845)
                     /gene="ybgC"
                     /locus_tag="JN078_001327"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HAY9040585.1"
                     /translation="MNTTLFRWPARVYYEDTDAGGVVYHASYVAFYERARTEMLRHHH
                     FSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENT
                     LLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ"
     gene            complement(23995..24288)
                     /gene="ybgE"
                     /locus_tag="JN078_001328"
     CDS             complement(23995..24288)
                     /gene="ybgE"
                     /locus_tag="JN078_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyd operon protein YbgE"
                     /protein_id="HAY9040586.1"
                     /translation="MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTS
                     ELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIIGLIFFFF"
     gene            complement(24288..24401)
                     /gene="cydX"
                     /locus_tag="JN078_001329"
     CDS             complement(24288..24401)
                     /gene="cydX"
                     /locus_tag="JN078_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-I oxidase subunit CydX"
                     /protein_id="HAY9040587.1"
                     /translation="MWYFAWILGTLLACSFGVITALALEHVESGKAGQEDI"
     gene            complement(24416..25555)
                     /gene="cydB"
                     /locus_tag="JN078_001330"
     CDS             complement(24416..25555)
                     /gene="cydB"
                     /locus_tag="JN078_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HAY9040588.1"
                     /translation="MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDT
                     ERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPV
                     GFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGN
                     FFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALA
                     GVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLP
                     LLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQ
                     LTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY"
     gene            complement(25571..27139)
                     /gene="cydA"
                     /locus_tag="JN078_001331"
     CDS             complement(25571..27139)
                     /gene="cydA"
                     /locus_tag="JN078_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HAY9040589.1"
                     /translation="MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSG
                     KQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLM
                     AFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFN
                     FETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKR
                     SFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPD
                     QEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSG
                     STDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRI
                     MVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQP
                     WAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGR
                     YHFEQSSTTTQPAR"
     gene            complement(27987..>29058)
                     /locus_tag="JN078_001332"
     CDS             complement(27987..>29058)
                     /locus_tag="JN078_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HAY9040590.1"
                     /translation="IEESSDDGDEYDYSPAKEEWVITAANAKPQCDIIHEAWQSRAVI
                     RYDMAVPLNLSERSARQSTGRVGVVLVVTLSHNSRRIDVDINLDNQADDHRLRVLVPT
                     PFNTDSVLADTQFGSLTRPVNDSAMNNWQQEGWKEAPVPVWNMLNYVALQEGRNGMAV
                     FSEGLREFEVIGEEKKTFAITLLRGVGLLGKEDLLLRPGRPSGIKMPVPDSQLRGLLS
                     CRLSLLSYTGTPTAAGVAQQARAWLTPVQCYNKIPWDAMKLNKAGFNVPESYSLLKMP
                     PVGCLISALKKAEDRQEVILRLFNPAESATCDATVAFSREVISCSETMMDEHITTEEN
                     QGSNLSGPFLPGQSRTFSYRLA"
BASE COUNT         7342 a         7637 c         7086 g         6993 t
ORIGIN      
        1 acatttttaa aacagctata gcttctggtc ttgccgaaga agatccagct tctgcaacca
       61 ggccattcag aactgaagtg aagcgcagtc gactgttaat tgacgagtat ctgttaatca
      121 ggaaaatagc agacgtccag aacgaatggt tcggcctttg catggatctt gcactggtaa
      181 caggacagcg cgaaggagat ctggcggcta tgagatggga ggatataaga gatggcagac
      241 tatacgtgga acaacaaaaa acaggggcaa aaattcgcat ttctctcccc accacgattt
      301 ccagattgaa tttaacactt accgatgtac tggataactt gaaaaaaata aacggtaaaa
      361 acgaaaagtt actcggaggg aagacagcca ggacaatcgc agcacagttc aggattgccc
      421 gagacacatc cggattgaaa tgggaaggtg acccaccgcc atttcatgaa atccgaagtt
      481 tatccggtcg cctgcactca gcagaaaaag gcagtgattt cactcaggcg ctccttggac
      541 atcgttcatc cagcatgacg gataaatacc gtgacggacg agggagggaa tggaaagaca
      601 tttagaatta atttcgaatg atttcgaaac accacttgta attaattgat tataaaggat
      661 taattcctaa gaggcatttg cttcatgaat gctcctttgc atttagcaac tgactgtaac
      721 agctaaaatt agtcgctttt ggcggtgaat gctgaattaa aacgcagaat tttgtccgat
      781 agtggtatcg gtgtaccatt cgcgcagacg aaaattctta accttaatct ggaatacgcc
      841 atgaccacac gcgtgattgc tctcgactta gacggcacct tattgacccc gaaaaagacc
      901 ctgcttcctt catcgataga agccctggcc cgcgctcgcg aagcaggcta tcaattaatc
      961 atcgtcacag gtcgccatca cgtcgctatt catccttttt atcaggcgct ggcgctggat
     1021 acacctgcta tttgctgtaa tggcacctat ttgtatgatt atcatgcaaa aaccgtgctg
     1081 gaagcggacc caatgcccgt taataaagcc ctgcaactca ttgagatgct gaatgaacac
     1141 cacattcacg gtctgatgta tgtggatgat gcaatggtct atgagcaccc gaccgggcat
     1201 gtcattcgca cgtctaactg ggcgcaaacc ctgccgccgg aacagcgtcc gactttcaca
     1261 caagtcgctt ctctggctga aacggcgcaa caagttaacg ccgtatggaa gttcgccctg
     1321 acgcacgatg acatgccgca attgcagcat tttggtaagc atgtcgaaca tgaactggga
     1381 ctggagtgtg aatggtcctg gcacgatcag gttgatattg cacgcggcgg caacagcaaa
     1441 ggtaaacgtt tgacgaaatg ggttgaggcg caaggctggt cgatggaaaa cgtcgtggcg
     1501 ttcggcgata actttaatga tatcagtatg ctggaggccg ctggtacagg cgtggcgatg
     1561 ggcaacgccg atgacgcggt aaaagcgcgc gccaacattg tgattggtga taacaccacc
     1621 gacagcattg cccagttcat ttatagccac ctgatttaat caggcggtta tcgacacact
     1681 tttaatttgc gcgtacagcc acaggcctgg tttgatcgcc agttcatccc tggcccacgg
     1741 gctgatacgc gcccacagcg ttttaccgcc gacttccagc tccacttcca cctgaccgtt
     1801 gtcgtcataa ctattaacaa cttttgcccg caatacgtta cgaatgctgg tttgctgcgg
     1861 cggttgtaaa accagagaaa catcggaagc ctgaatgcgg atacgtagcg cagcttgcag
     1921 cggttcgtcc agcttattga cccacaaatg ctgatcgccc agcgccagcg cggtcatcgc
     1981 gtaatgcgga tgatgctcaa gcaccgtcac tttcagaatg ctactttgtt gctctttcgg
     2041 cagccacgga ttcatcacgc tactacccca gacttcttcc agtgcgccaa aggctttcac
     2101 ctgaccgttt tccagtacca tcactctgtc tgccagatgg aggatctcat ccagcgaatg
     2161 gctgacatac aacatcggga tgttgatttc ccgcgtcaga cgttgcagat aaggcaacag
     2221 ttcgcgttta cgcggaatat ccagtgacgc cagcggttca tccagcaaca gcaattctgg
     2281 tgccgtcagc aaagcccgcc caatcgctac gcgctgtttt tcgcctccgg acaggctgcc
     2341 tggtaaacgg tcaagcaacg gttcaatgcc taaaagcgcc accagcttat cgaactgatc
     2401 gaccatgctt ttcgccatgc cgtagcgcag attgccacgc actttgtaat gcggaaacag
     2461 ccgcgcatcc tgaaaaacat agccaacgcg acgcttttct ggcgtcaggc agataccttt
     2521 ttcggcatca tttagtaccc gaccattgag gacaatcctc cctttttgcg ggcgcgtcag
     2581 tccactgatg gcgttaatca gcgaagtttt tccggcaccg gagacgccaa agatagcagt
     2641 gatgccattg gcgggcagcg tttcattaat agtcaggcaa tggttgccca acgtctggga
     2701 aaaattcagt tccagcatga ttagcgcccc gcccgttcac ggctgattct ggccagccat
     2761 tctgaaatca acagggagat catcgccagc gcaatagaaa taatgcacag tctcgccgcg
     2821 ccactttccc cgccgggggt ctggatcagg gtatacatgg cagagggaat ggttcgcgtt
     2881 tcgccaggaa tgttcgacac aaaggtgatg gttgcaccaa actcaccgag agaacgagca
     2941 aaagccagta ccgtaccaac aataattccc ggtaaggtca gcggtaacgt gatagtaaag
     3001 aaaacgcgcc agcgcccggc acctagtgtt cttgcggcct gttcgagttt gacatcaacc
     3061 ccttccagcg ccagacgaat tgcccgcacc atcagcggaa acgacatgac ggcggcagcg
     3121 agaaccgcgc cgcgccagct aaaggcgaag gtaataccaa accagtcata cagacgttca
     3181 ccgataaatc cgcgccgtcc catcgaaact aataataagt aaccgacgac cacgggcggt
     3241 aacaccagcg gtagatgcag tacgctgtcg agcagagctt tgcccggaaa cgtgcaacgc
     3301 accagtaacc aggcaaaaaa gatcccaaac ggcaggctaa acagcacagc cagggaagaa
     3361 actttcaggc ttaataaaac tgcctgccat tctggatcgg tcagtatcat tacttggttg
     3421 taaatccgta acgtttaaag atttccgctg cctgcggtcc cttcagataa tcataaaatg
     3481 ctttcactgt cgcattgtta tgcccttcca caacagcaac cggatattcc acttttttat
     3541 gtgaatcttc cgggaaggtg gcaaccactt ttaccccttt gctgacaact gcgtcagaac
     3601 cgtaaacaat gcccaacggc gcttcattgc gttcgaccaa cgccagcgcg ccacgaacat
     3661 cttccgccgg agccaatttc ggggagagcg tatcccatgc gcccagtttt tgcagtgctt
     3721 cttttgcata aatgccagca gggacatgtt ccggatcgcc aaccgcgagg cgaccgccat
     3781 tcagcagcga agtccagtta gttgtgctgt cgatgatgaa atctttctgc tcgctggctt
     3841 tcggtgctac aacgaccagg ctattgccga gcagtgtctg gcgcgaagcc gtatcgatcg
     3901 cttttttatc aaccgcataa tccatccatt tctgatcggc agagataaac agatccgcag
     3961 gcgctcccgc ttcaatctga cgggccagag tagatgacga agcgaaagaa gaaaccacat
     4021 ccacgccttt ttctttttta tactgcgtag caatgtcctg cattgcgtta gtcagtgatg
     4081 cggcggcgaa caccgtgatt ttcccttcat ctgccagtgt attgccagca acagcgaaag
     4141 agagtgccgc cccggcaaac aagttcaacc atttacgagc cattggtaac cccttaatgt
     4201 aacgttatat aggtgacaat ataacggcta actcagaatt ttcccagcag ttattgctaa
     4261 cctttgtgag gtagataaga aaaaatatcg gctggaaaag caggaagttg agaaaaagaa
     4321 atgcccgact aagtgggcat tcagggaatc aatgattttg tccgggctgg tcttttttac
     4381 caacaccaga aaagatgttg aatacttcac caagaccgta aatcagaccc aggatgatgg
     4441 ccatcacgac aggtaccatg attacggcga ataccagact ttttaataac tctaacatgg
     4501 tcaactccag atatagtcat gagactattc taaccgctaa gcacagaaaa gcactcccct
     4561 tttgtgcggt cagctttgcg tggcgttcgt tttccgtcac aataagactt ttgccaggac
     4621 attgttatgc aggccgaaat ccttctcacc cttaagctcc aacaaaaatt attcgccgac
     4681 ccgcgccgga tttcgctact aaaacacatt gcgctttccg gttccattag ccagggagcg
     4741 aaagatgccg gtatcagcta taaaagcgcc tgggatgcca ttaacgagat gaatcagtta
     4801 agcgagcata ttctggttga gcgcgcaaca ggcggtaaag gtggcggcgg cgcagtactg
     4861 acccgctatg gtcagcgact gattcagctc tatgacttac tggcgcaaat ccagcaaaaa
     4921 gcctttgatg tgttaagtga cgatgacgcc ctgccgctga acagcctgct ggccgcgatc
     4981 tcacgttttt cactgcaaac cagcgcccgt aaccagtggt tcggtaccat caccgcccgc
     5041 gatcatgatg acgttcaaca gcatgttgat gtcttactgg ctgacggaaa aacacgcctg
     5101 aaagtcgcaa ttaccgcaca aagcggcgca cgtctggggc tggatgaagg caaagaagtg
     5161 ttgatattgc taaaagcgcc gtgggtaggc attactcagg acgaagcggt cgcacaaaac
     5221 gccaacaacc aattaccggg tattattagt catattgagc gcggcgcaga gcagtgcgaa
     5281 gtattaatgg cgctacccga cgggcaaaca ctgtgcgcca cagtgccggt aaatgaagcg
     5341 acttctcttc agcaagggca gaatgtcacg gcctacttta atgccgacag cgtgattatc
     5401 gccacgctgt gctaagcgtg ttgacaattt gttatgaaac acgtatccct gtcagtaatc
     5461 gctgcacaaa atgggatata aaatgtcatc gttgcaaatt ttgcaaggca cgtttcgtct
     5521 tagcgacaca aaaacgctgc aattgcctca gctaacgtta aacgcgggtg atagttgggc
     5581 gtttgtcggt tcgaatggaa gcgggaaatc ggccctggcc cgcgcgctgg cgggggaact
     5641 tccgcttttg aaaggtgaac ggcaaagcca gttttcccac atcactcgtc tctccttcga
     5701 gcaattgcaa aaactcgtca gcgacgaatg gcagcggaat aacaccgata tgctcggccc
     5761 tggcgaagat gacaccggac gcactacggc tgagatcatt caggatgaag taaaggatgc
     5821 accgcgttgc atgcaactgg cgcagcagtt cggtattacc gccctcctcg accgacgctt
     5881 taaatacctt tccactggcg agacgcgaaa aatcctgctg tgtcaggcgc tgatgtcgga
     5941 gcctgacttg ttgattcttg atgagccgtt cgatggcctg gatgttgcct cacgtcagca
     6001 gctggctgag cgactcgcct cgttacatca gtccggtatt actctggtac tggtgctcaa
     6061 tcgcttcgat gagatcccgg agtttgtcca gtttgctggc gtgctggcgg attgcacgtt
     6121 agcggaaact ggcgctaaag aggaactgct ccaacaagca ctcgtcgcgc aactggcaca
     6181 tagtgaacag cttgaaggtg tgcaactgcc ggagccggat gaaccttcag cacgtcacgc
     6241 cttacccgcc aacgaaccgc gcattgtgct gaacaatggc gtggtttctt ataacgatcg
     6301 ccccattctt aataacctta gctggcaggt gaatccaggt gaacactggc aaattgtcgg
     6361 gccaaatggt gcaggaaaat cgacgttatt aagcctggtt actggcgatc atccgcaagg
     6421 ttacagcaac gatttgacgc ttttcggacg acgtcgcggc agcggcgaaa ccatctggga
     6481 tatcaaaaag catatcggtt acgtcagcag tagtttgcat ctggattacc gggtcagcac
     6541 taccgtgcgt aatgtgattc tttctggcta ttttgattcg attggcattt atcaggccgt
     6601 ttcggatcgc cagcaaaaac tggtgcagca gtggctggat attctcggca ttgataaacg
     6661 tacggctgac gctccgttcc atagtctttc ctggggacag cagcatctgg cgctgatcgt
     6721 ccgcgcactg gtgaaacatc cgacgttgct tattctcgat gaaccactac aggggcttga
     6781 tccgctcaat cgccagctta tccgccgttt tgttgatgtg ctgattagcg aaggtgaaac
     6841 gcaattgttg tttgtttcgc accacgctga agatgcgcct gcctgtatta cccatcgcct
     6901 tgagttcgtg ccggacggtg gactctatcg ctatgtgctg acaaaaatat attgagtcgg
     6961 tagtgctgac cttgccggag gcggcctaag cgccctctcc ggccaacggt tcgacgcatg
     7021 caggcatgaa accgcttctt ttttcagata aaaagcgcaa tcattcataa accctctgtt
     7081 ttataatcac ttaatcgcgc ataaaaaacg gctaaattct tgtgtaaacg attccactaa
     7141 tttattccat gtcacacttt tcgcatcttt gttatgctat ggttatttca taccataagc
     7201 ctaatggagc gaattatgag agttctgctt accggtggta gcggttacat tggaagtcat
     7261 acctgcgtgc aattactgca aaacggtcat gatgtcatca ttcttgataa cctctgtaac
     7321 agtaagcgca gcgtactgcc tgttatcgag cgtttaggcg gcaaacatcc aacgtttgtt
     7381 gaaggcgata ttcgtaacga agcgttgatg accgagatcc tgcacgatca cgctatcgac
     7441 accgtgatcc acttcgccgg gctgaaagcc gttggcgaat cggtacaaaa accgctggaa
     7501 tattacgaca acaatgtcaa cggtactctg cgcctgatta gcgccatgcg cgccgctaac
     7561 gtcaaaaact ttatttttag ctcctccgcc accgtttatg gcgatcagcc caaaattcca
     7621 tacgttgaaa gcttcccgac cggcacaccg caaagccctt acggcaaaag caagctgatg
     7681 gtggaacaga tcctcaccga tctgcaaaaa gcccagccgg actggagcat tgccctgctg
     7741 cgctacttca acccggttgg cgcgcatccg tcgggcgata tgggcgaaga tccgcaaggc
     7801 attccgaata acctgatgcc atacatcgcc caggttgctg taggccgtcg cgactcgctg
     7861 gcgatttttg gtaacgatta tccgaccgaa gatggtactg gcgtacgcga ttacatccac
     7921 gtaatggatc tggcggacgg tcacgtcgtg gcgatggaaa aactggcgaa caagccaggc
     7981 gtacacatct acaacctcgg cgctggcata ggcagcagcg tgctggacgt ggttaatgcc
     8041 ttcagcaaag cctgcggcaa accggttaac tatcattttg caccgcgtcg cgagggcgac
     8101 cttccggcct actgggcgga cgccagcaaa gccgaccgtg aactgaactg gcgcgtaacg
     8161 cgcacactcg atgaaatggc gcaggacacc tggcactggc agtcacgcca tccacaggga
     8221 tatcccgatt aaggaacgac catgacgcaa tttaatcccg ttgatcatcc acatcgccgc
     8281 tacaacccgc tcaccgggca atggattctg gtttcaccgc accgcgctaa gcgcccctgg
     8341 cagggggcgc aggaaacgcc agccaaacag gtgttacctg cgcacgatcc agattgcttc
     8401 ctctgcgcag gtaatgtgcg ggtgacaggc gataaaaacc acgattacac cgggacttac
     8461 gttttcacta atgactttgc ggccttgatg tctgacacgc cagatgcgcc agaaagcaac
     8521 gatcctttga tgcgttgcca gagcgcgcgc ggtaccagcc gggtgatctg cttttcaccg
     8581 gatcacagta aaacgttgcc agaactgagc gttgcggcat tgacggaaat cgtcaaaacc
     8641 tggcaggagc aaaccgcaga gctgggaaaa acgtacccgt gggtgcaggt ctttgaaaac
     8701 aaaggtgcgg cgatgggctg ctctaacccg catccgcacg gacagatttg ggcaaatagc
     8761 ttcctgccta acgaagctga gcgcgaagac cgcctgcaaa aagaatattt tgccgaacag
     8821 aaatcaccaa tgctggtgga ttatgttcag cgcgagctgg cagacggtag ccgtaccgtt
     8881 gtcgaaaccg aacactggtt agccgttgtg ccttactggg ctgcctggcc gttcgaaacg
     8941 ctactgctgc ccaaagccca cgttttgcgg atcaccgatt tgaccgacgc ccagcgcagc
     9001 gatttggcgc tggcgttgaa aaagctgacc agtcgttatg acaacctctt ccagtgctcc
     9061 ttcccctact ctatgggctg gcacggcgca ccatttaatg gcgaagagaa tcaacactgg
     9121 cagctgcacg cgcactttta tccgcctctg ctgcgctccg ccaccgtacg taaatttatg
     9181 gttggttatg aaatgctggc agagacccag cgagacctga ccgcagaaca ggcagcagag
     9241 cgtttgcgcg cagtcagcga tatccatttt cgcgaatccg gagtgtaaga aatgagtctg
     9301 aaagaaaaaa cacaatctct gtttgccaac gcatttggct accctgccac tcacaccatt
     9361 caggcgcctg gccgcgtgaa tttgattggt gaacacacgg actacaacga cggtttcgtt
     9421 ctgccctgcg cgattgatta tcaaaccgtg atcagctgtg caccacgcga tgaccgtaaa
     9481 gttcgcgtga tggcagccga ttatgaaaat cagctcgacg agttttccct caatgcgccc
     9541 attgtcgcgc atgaaaacta tcaatgggcg aactacgttc gtggcgtggt gaaacatctg
     9601 caactgcgta acaacagctt cggcggtgtg gacatggtga tcagcggcaa tgtgccgcag
     9661 ggtgccgggt taagttcttc cgcttcactg gaagtcgcgg tcggaaccgt attgcagcag
     9721 ctttatcatc tgccgctgga cggcgcacaa atcgcgctta acggtcagga agcagaaaac
     9781 cagtttgttg gctgtaactg cgggatcatg gatcagctaa tttccgcact cggcaagaaa
     9841 gatcatgcct tgctgattga ctgtcgttca ctggggacca aagcagtttc catgccgaaa
     9901 ggtgtggctg tcgtcatcat caacagtaac ttcaaacgta ccctggttgg cagcgaatac
     9961 aacacccgtc gtgaacagtg cgaaaccggt gcgcgtttct tccagcagcc agccctgcgc
    10021 gatgtcacca ttgaagagtt caacgctgtt gcacatgagc tggacccaat cgtggcgaaa
    10081 cgcgtgcggc atatcctgac tgaaaacgcc cgcaccgttg aagctgccag cgcgctggag
    10141 cagggcgacc tgaaacgtat gggcgagttg atggcggagt ctcatgcctc tatgcgcgat
    10201 gatttcgaaa tcaccgtgcc gcaaattgac actctggcag aaatcgtcaa agctgtgatt
    10261 ggcgacaaag gtggcgtacg catgaccggc ggcggatttg gcggctgtat cgtcgcgttg
    10321 atcccggaag agctggtgcc tgccgtacag caagctgtcg ctgaacaata tgaagcaaaa
    10381 acaggtatta aagagacttt ttacgtttgt aaaccatcac aaggagcagg acagtgctga
    10441 acgaaactcc cgcactggca cccgatggtc agccgtaccg actgttaact ttgcgtaaca
    10501 acgcagggat ggtagtcacg ctgatggact ggggtgcgac tttactttca gcccgtattc
    10561 cgctttccga tggcagcgtc cgcgaggcgc tgctcggctg tgccagcccg gaatgctatc
    10621 aggatcaggc cgcgtttctg ggggcctcta ttggtcgtta tgccaaccgc atcgccaata
    10681 gccgttatac ctttgacggt gaaaccgtga ccctttcgcc aagtcagggc gttaaccagc
    10741 tgcacggcgg cccggaaggg ttcgacaaac gtcgctggca gattgtgaac cagaacgatc
    10801 gtcaggtgct gtttgccctg agttcagatg atggcgatca gggcttcccg ggtaatctcg
    10861 gcgcaacggt gcaatatcgt ctgaccgacg ataaccgtat ctccattact tatcgcgcca
    10921 cagttgataa accttgcccg gtgaatatga ctaatcacgt ctatttcaat cttgacggcg
    10981 agcagtctga cgtgcgcaat cacaagttgc agattctggc ggacgaatat ctgccggttg
    11041 atgaaggcgg cattccgcac gacggcctga aatctgtcgc cggaacgtct tttgatttcc
    11101 gcagcgccaa aatcatcgcc agtgagtttc ttgccgacga cgatcagcgc aaagtgaaag
    11161 gttacgatca cgcattcttg ttacaggcca aaggcgatgg caagaaagtg gcggcgcatg
    11221 tctggtcagc agatgaaaaa ttgcagctga aggtctacac caccgctccg gctctgcaat
    11281 tctactccgg caacttcctc ggcggcacac cgtcgcgggg aacagaacct tacgccgact
    11341 ggcaagggct ggcgttggaa agcgagtttc tgccggacag cccgaaccac cctgaatggc
    11401 cgcaaccgga ctgcttcctg cgtcctggcg aagagtattc cagcctgacg gaatatcagt
    11461 ttattgctga gtaatgttaa gccctcgtca tgagggcttt atctcatatt gctcaaatca
    11521 ccagcaaaca ccgacatatt tgcaactcaa tattcacaac aaccttacac tgcgccacta
    11581 ttttcgctat ggttatgcgt aagcattgct gttgcttcgt cgcggcaata taatgagaat
    11641 tattatcatt aaaagatgat ttgaggagta agtatatggc tgtaactaag ctggttctgg
    11701 ttcgtcatgg cgaaagtcag tggaacaaag aaaaccgttt caccggttgg tacgacgtgg
    11761 atctgtctga gaaaggcgta agcgaagcaa aagcagcagg taagctgctg aaagaggaag
    11821 gttacagctt tgactttgct tacacttctg tgctgaaacg cgctatccat accctgtgga
    11881 atgtgctgga cgaactggat caggcatggc tgcccgttga gaaatcctgg aaactgaacg
    11941 aacgtcacta cggtgcgttg cagggtctga acaaagcgga aactgctgaa aagtatggcg
    12001 acgagcaggt gaaacagtgg cgtcgtggtt ttgcagtgac tccgccggaa ctgactaaag
    12061 atgatgagcg ttatccgggt cacgatccgc gttacgcgaa actgagcgag aaagaactgc
    12121 cgctgacgga aagcctggcg ctgaccattg accgcgtgat cccttactgg aatgaaacta
    12181 ttctaccgcg tatgaagagc ggtgagcgcg taatcatcgc cgcacacggt aactccctgc
    12241 gtgcgctggt gaaatatctt gataacatga gcgaagaaga gattcttgag ctgaatatcc
    12301 cgactggcgt gccgctggtg tatgagttcg acgagaattt caaaccgctg aaacgctatt
    12361 atctgggtaa tgctgacgag atcgcagcga aagcagcggc ggttgcaaac cagggtaaag
    12421 cgaagtaaac gtcattcgtt taaaatgaga aagccgactg caagtgagtc ggcttttttg
    12481 ttgctaacaa tggagcacat tgcctgatgc gacgcttcgc gacttatcag gcctgtggtg
    12541 attcatcgga tacgccactc tgacggcgca tccgacaatt aaaccttacc cgcgacgcgc
    12601 ttttactgca ttcgccagtt gacgtaacag agcatcggta tcttcccagc cgatgcaggc
    12661 atcggtgatg ctcttaccgt aggccagcgg ctccccgctc tcgaggctct gattgccttc
    12721 caccagatgg ctttccacca tcacgccaat aatggccttt tcgccaccgg caatctgctg
    12781 gcaaacgtca gcacaaacat ccatctgctt tttgaattgt ttggacgagt tagcatggct
    12841 gaaatcgatc atcacctgtg ctggcaggcc tgctttgttc agcccttctt tcacttcagc
    12901 aacgtgcttc gcgctgtagt taggctcttt accgccgcgc agaatgatat ggcaatcgcc
    12961 gttaccgctg gtattcacaa tcgccgaatg cccccatttc gttacggaca ggaagcagtg
    13021 cggcgcaccg gcggcattaa tggcatcgat agccacttta atcgtaccgt cggtgccatt
    13081 tttgaagccg actggacaag aaagccctga tgccagttcg cggtgcacct gcgattcggt
    13141 ggtacgtgcg ccaattgcgc cccagctcat caggtcagcg agatattgtg gggtgatcat
    13201 atcgagaaac tcacccgccg ctggcagacc gctgtcgtta atatcaagca gcaatttacg
    13261 ggctatacga agaccgtcgt tgatctggaa gctgttatcc atatgcggat cgttaatcag
    13321 ccctttccag cccaccgtgg tacgcggctt ttcaaaatag acgcgcatta cgatttccag
    13381 ctcatctttc agctcttcac gcagcgccag caagcgagtg gcatactctt tagccgcgac
    13441 aggatcatga attgagcacg ggccaatcac caccaacagg cgatcatcat tacctttcag
    13501 gatcttatgg atcgcttttc gggcatgggc aaccgtattc gcggcatttt cagtagcggg
    13561 gaatttttcc agcaatgcga caggaggaag taactctttg atttctttga tgcgtaaatc
    13621 gtcgttctga taattcatgt ctgttccagt gttgccatac ttatcttagt gaatgcaata
    13681 cttccaatct atatcttccg tcagaatgtg taaacggggt tttacattat gaacggatta
    13741 atcctggaat tagcaagaaa aacgccagat tgtcgcgaaa aacgagatct ctcctacaat
    13801 ttctaactgt aactcctttg tttgttaatt atttcaagat tctctgctgc gtttcataaa
    13861 ctggctgaaa tcttaaacca atgccttata ttcacctgca aatgcactgt tggaagaggt
    13921 tatccgacat aacgaccata acaggagcat cctatgaaaa tgacaaaact ggccacatta
    13981 tttctgactg ccactctaag ccttgccagc ggtgccgcac tggctgccga tagcggagcg
    14041 caaactaata acggccaggc aaacgccgca actgatgcgg gccaggtagc ccctgacgcc
    14101 cgtgaaaatg tcgcgccaaa taacgtcgac aataacgggg taaataccgg ttctggcggc
    14161 acaatgctgc attcggatgg ttcttcaatg aacaatgacg gaatgaccaa agatgaagag
    14221 cacaagaaca ccatgtgcaa agatggtcga tgtccggata tcaataaaaa ggtacaaacc
    14281 ggtgatggca tcaataatga tgtcgatacc aaaaccgacg gtaccacgca gtaaccctgc
    14341 aaaatagcca ataatgggag agcggagtct ctccctttta atttttcact tctaaaagca
    14401 gtatgatgtc ataaagttaa gtgagaataa ttaagggatg actcgtcatg gcgcactcac
    14461 actcacacac gtcctcacac ctgccagaag ataataatgc tcgtcgcttg ttgtatgctt
    14521 tcggcgtgac tgccgggttt atgctggtag aagtcgttgg tggttttctt tctggttctc
    14581 tggcattgct ggccgatgcg ggtcatatgt tgaccgatac tgccgccctg cttttcgccc
    14641 tactcgccgt gcaattttca cgtcgtcctc ccaccattcg ccacactttc ggttggctaa
    14701 gactgaccac gctcgcggcg tttgtgaatg ccatcgccct cgtggtaatt accattttga
    14761 ttgtctggga ggcgatagaa cgcttccgca cgccgcgtcc ggtcgagggc ggcatgatga
    14821 tggcaattgc cgtggctggg ttgctggcaa atatactttc tttctggtta cttcatcacg
    14881 gcagcgaaga gaaaaacctc aacgtacgag cagcggcatt gcatgtgctc ggggacctgt
    14941 tgggttcggt tggggctatt attgccgcgt tgattattat ctggaccggc tggacacctg
    15001 ctgaccccat tctctcgata gtggtgtcgc ttctggttct gcgtagcgcg tggcgactgt
    15061 tgaaagatag cgtgaatgaa ttacttgaag gtgcaccggt atcgctggat atcgctgaac
    15121 tgaagcgtcg tatgtgccgg gaaatcccgg aagtccgcaa tgtgcaccat gtacatgtat
    15181 ggatggtagg tgagaagccg gtgatgacgc tgcatgtgca ggtgatcccg ccacacgctc
    15241 acgatgcctt gttggatcag atccaacact acctgatgga tcactatcag attgagcacg
    15301 ccaccattca gatggaatat caaccttgtc atgggccaga ctgccacctg aatgaagggg
    15361 tgtctggcca ttcacatcat caccattaat gggacagcgc gcatgagcct ctttcacgtg
    15421 cgctgttgat ccacatccga ctgccgttga gcgcaataaa ggtcaggatg atgtactcca
    15481 gagacatggc gtaaacgccc tgaagtgcaa aaataacgac gctaatcacg ttaataatca
    15541 cccacaacag ccagttttcc acatacttac gcgtcatcag aagcattgcc acgatagata
    15601 acaccatcat gcatgaatcc cagaacggga aagcgtccgg ttgcagttca ggcatcacaa
    15661 cctgtaatcc taatgcttgc atgatcatga ctgccacgcg ggtcaaaaat gcaaacaccg
    15721 gattgataaa taccgtcatc agaccaatcg aaacaacgca aaccgccaac cagctgagcg
    15781 ccttcggcaa tggtaaccag cgaattttca actccgcctc gttctgactg gtttgtcgcg
    15841 accacgcata ccaaccgtaa atattcgcgg caaagaaaaa cacctgtaat agcaggctgg
    15901 catacagctg aatctgaaag aaaataatgc caaacaaggt gacgttgatc aggccaaaga
    15961 agtagttgct gatcttctcc agactggcaa ggccaataca cagcaacccg gcgatcgtgc
    16021 ctaccgcttc gatccatgag agatcataac cgcctgctcc tattggtata tgtaccagga
    16081 tattctgcac actaaaaaaa tccatctttc ccccaaagcg taacgttacg ccttattatt
    16141 cgttatccac gtagtgtagc cgcaaaatcc agcatacgat tgagcggcac cagcgccctc
    16201 tctcgcagcc tttcatcaac atgaacctcg tgattgcttc cttcctgttc taatgcctct
    16261 gcgatggcct gaaggccatt catggccatc cacggacaat gcgcgcagct gcggcaggtt
    16321 gcaccctcac ctgcggttgg tgcttccagt aactctttat ctggcaccgc ctgctgcatt
    16381 ttgtagaaaa taccccgatc ggttgccaca ataagcctct gatgtggcaa tgttttcgca
    16441 gcagcgatca gttgactggt ggaaccgacc gcatccgcca tatcgacaat agcttgtggt
    16501 gattctggat gcaccagtat ggcagcatcc gggtattctt cttgcaagcg ggttaacgcc
    16561 tgagtcttaa attcatcatg cacaatacag gcaccctgcc agcatagaat gtctccaccc
    16621 gtctgttttt gcacgtaacg ccccagatgt ttgtcgggtg cccagatgat tttttcaccc
    16681 aaactatcaa gatgatcaat aagttcgacg gcaatgcttg aagttaccac ccaatctgcg
    16741 cgcgctttta ccgcagcaga agtgttggcg tagacgacga cagtacgatc gggatgggca
    16801 tcgcaaaatg cgttaaattc ttcaacaggg cagccgagat ccagtgaaca ttcagcctga
    16861 agtgtcggca tcagaattgt tttttccgga ctgagaattt tggcggtttc tcccataaat
    16921 ctcaccccag cgactaacaa agtagaagcg ggatgctttg caccgaagcg cgccatttcc
    16981 agagaatcag aaatacagcc accggtttct tctgccagtt gttgaatttc gggatcggta
    17041 tagtagtggg caaccatcac cgcattacgt tcttttagca gacgttttat cttctcgcgg
    17101 taatacgctt tttcatcaat gcttaacggc gtcggcttcg gggggaaagg ataaatcgcc
    17161 gtgtctggat caaacattac gctcatctta ccatctcgtt ttacaggctt aacgttaaaa
    17221 ccgacattag cgtaatattc gctgttatcg gtgtaatttg ttttatatgc taaacaagat
    17281 agtcgaatgg tggggaaaag tcactcgaat tacgcctaat tccaccgacg tagagttgct
    17341 tgcacagtaa gctctgacga tgtcatcagg tttacaaagt gaaattgagg atgcctgaat
    17401 agcaaaaaag cgcctttagg gcgctttttt acattggtgg gtcgtgcagg attcgaacct
    17461 gcgaccaatt gattaaaagt caactgctct accaactgag ctaacgaccc atacgggtgt
    17521 tacctgaaag atttctactc ggggccaatc tttaagattg gtgtgtcgtg caggatgact
    17581 cgcttcgctt gccctacggg ccgttgctgg cgcaacgtta tccttcacgc ttaacatctg
    17641 agtttgatgt taaaattggt gggtcgtgca ggattcgaac ctgcgaccaa ttgattaaaa
    17701 gtcaactgct ctaccaactg agctaacgac ccgagtggtg ggtgatgacg ggatcgaacc
    17761 gccgaccccc tccttgtaag ggaggtgctc tcccagctga gctaatcacc cgataatgcg
    17821 ctggatacta caaactactt ccaccgaacc catcgtaatt agtggtgggt cgtgcaggat
    17881 tcgaacctgc gaccaattga ttaaaagtca actgctctac cgactgagct aacgacccgg
    17941 tggtgggtga tgacgggatc gaaccgccga ccccctcctt gtaagggagg tgctctccca
    18001 gctgagccaa tcacccaata ctacgctgga tactacaact aactatgtta gtggtgggtc
    18061 gtgcaggatt cgaacctgcg accaattgat taaaagtcaa ctgctctacc aactgagcta
    18121 acgacccact ttttcgttgc tttcggtttg tttgatatcc cgtggcaacg gcggcatata
    18181 ttactgattt cagacttgag cgcaacaaaa atttcgatgc agatcactca actgcttatg
    18241 attcgcacga cacgaccaga aataatgcaa cttctggtcg tgtgttatgc attacatcgc
    18301 gttcagacgt ttttgtgcct gtttagcgcc atcagtacca gggtatttac tgataacctg
    18361 ctggtatacg gctttcgctt ttgcggtgtc acctttgtcc tgcatgatga cgccgacttt
    18421 aaacatcgca tcagcagcct ttggtgactt cggatagttt ttcactaccg aagcaaaata
    18481 gtacgccgca tcatcttttt tacccttgtt gtagtttaac tgacccagcc aataattggc
    18541 gtttggcagg taagttgaat cagggtaatt tttgatgaaa ttctgaaatg ccaccattgc
    18601 gtcatcctgg cgggatttat cctgcaccag cgcaatagct gcattgtaat ccgtgtttgc
    18661 atcgccgctt ttcaccggcg cgccagcatt cgcagtacca gcatcagctg tcggcgtcgt
    18721 tgatgccgcc gcaccgcttt gatcgctgct ggttgattgc gccgctgcac caccgctgct
    18781 gaggctgtcg atctgcaaca ggatctgctt ttgccgctcc acgacctgat tcagttgata
    18841 ctgattttcc tgaatctgac cacgcaggga atcaatatcg gattgattat cagaaagttg
    18901 ttgctggagt tgggttaaaa gctggctgtg agcattagaa atacgctcaa gttgagtgac
    18961 gcggtcttcg accgagcctg agccgacact actgattggt gcctgagcaa aagcggccca
    19021 gggggccgct ataccaacca gtaacgacag actcaatagt tgatgtctga agttactgct
    19081 catgcaattc tcttagtaaa ccagtaccgc acgacggttt ttggagtatg ccgcttcgtc
    19141 atgacccagt actgcaggtt tttctttacc gtaagaaacg atggagatct ggtctgcaga
    19201 aacgccttta ccctgcaggt acatcttaac ggcgttcgca cgacgttcac ccagggagat
    19261 gttgtattcc ggagtaccac gttcgtccgc gtgaccttct acggtgactt tgtaagacgg
    19321 gttgctacgc aggaagtttg catgtgcatc cagcatttga gcgaagtcag aacggatatc
    19381 gtacttgtcc agatcgaagt aaacgatgtt gttctgctgc agctgttgca tttgcagacg
    19441 agcctgctct tcggaagaca tgttgccgtt gccgccgttc gcatccatac cagtgccggc
    19501 acccagcatg ccttcgctgc cgtcattgct ggcgttcttg ttggaagaac atgccgcaat
    19561 tgccataaca ggcagagcaa tcatcagccc tttcagcact ttgttcagtt gcatttcaat
    19621 gattccttta ctattcaatt aattattatc acagatacgg cgaccaggca gggaatttga
    19681 cctgtccatc agttgccgga agacgcgctt tgaaacgccc atctgtagaa accaaattca
    19741 gcacggatcc catcccctga gaagagctgt agattaccat agtgccatta ggtgccagac
    19801 ttggcgtttc atccaggaac gtggacgaca gaacttgtac gcctcccgtt gccagatctt
    19861 gtttggcaat gtgctgctgc ccaccattgg agctgaccat taccataaat ttaccgtcgc
    19921 tgctgacatc cgcatcctgg ttctgcgaac cttcccaggt aatacgttgt ggcgcaccgc
    19981 cgttgatatt cactttataa acctgcggac gaccggcctg gtcagaagta aatgccaggt
    20041 tctggctatc cgggaaccag gtcggttcgg tattgttact gcgaccatca gtcacctggc
    20101 ggatctgacc agaagccaaa tccattacgt acaggttcag actaccggtt ttcgacaagg
    20161 cgaatgccag tttgctgccg tctggcgaga atgcaggtgc accgttgtga cgcgggaatg
    20221 aagccacctg acgtacagcg ccatttgcca gcgtctgaat aaccagcgcg gaacgaccgc
    20281 tttcgaaggt cacataagcc agtttagaac cgtctggtga ccacgccgga gacatcagcg
    20341 gctgcggtga acggtgaacg acaaactggt tgtaaccgtc atagtcagat acgcgcagtt
    20401 catacgggaa ctgaccgccg ttggtctgaa caacgtaggc aatacgggta cggaacgcac
    20461 ctttaatgcc ggtcagtttt tcaaacactt catcactggc ggtatgacca gcataacgca
    20521 gccactgctt gttcactttg tacgagttct gagcaagtac agtacccggt gcgccgccag
    20581 tgtcaacaag ttgataagca acattgtaag aaccatccgg attcggagtg acctgaccga
    20641 caactacagc gtcaatgccc agtgcggacc atgcagatgg ttgtacttcc tgcgcactac
    20701 ccggctgctg tggcagacga gcgcgatcta acggattaaa tttaccgctg ttacgcaagt
    20761 cagcagcaac gatgccgcca atatcttcag gtgccgcacc aggccccgcc cactggaaag
    20821 gaacaacacc aataggacga ccggaatcta caccgctgtc gatcacaatg cggacttcag
    20881 catgcagaac tgatgcccac agtatgagaa aaccaaatgc tactcgtaat gcctgcttca
    20941 tcatatctcc cttatctgga ccgatggccc acgataattt agcagaatgt taacaaacta
    21001 aaatacacaa aactaccaga accccgtggc aaccggtgcc tgatgttgac cgtccgaaca
    21061 gtcaacatcg cgattacggt ttgaagtcca atggcgcgtt tttgaacact tcatatactg
    21121 cctggcttgg tggtttcggg atcttcgcaa gtttagctgc tgccaacgca gcctgacaaa
    21181 gtgcgggatc gccaccttca ggtttgatat ccagtaacat accatcgggt gccagtttta
    21241 tgcgcagcgt acaggttttg cctgcatagg acgatgcgtc atagaactta ctttcgatag
    21301 cagatttaat ctgcccggca tagttattga tatcggcccc tgatgcgcca ttgtttttag
    21361 aattaccact cccggcaggc gaagcattgt tccctttcgc ccctcccccc gttttcggtg
    21421 cattcttacc agagcttagc tcaccgaaaa tatcatctgc ctctgcggcg gctttttctg
    21481 ccgctgcttt cttatcagct gctgcctttt cagcagccgc tttttctgct gcttttttgt
    21541 cggctgcagc tttcttatca gctgcagcct tttcagcagc cgctttcttc tcagcttctg
    21601 ctttggcttt ttcagcagct tcagttgccg ctttctttct tgcttcagct gcagctgctt
    21661 ctgccgcttc cgctttcttc ttcagtgccg cagcggctgc ctcggctttt ttctgcgctg
    21721 cggctttggc ggcttctgct tctgcttttt tctttgcgtc tgcagccgct ttcttcgctg
    21781 cttcttccgc agctttagca tctgcttcgg ccttcgcttt agcatctgcc gccgctttcg
    21841 ctgccgcctc ttcagcttgc ttctgcttta actcggcctg ttttgcggct tcttcagcct
    21901 gctttttctg ctcctgagcc gctaaccgct ctttctcaag ttgcttcagg cgttcctgtt
    21961 cagccgcttg tttctcacgc agttcttcag cagcctgctg ttccttcatc ttgcgctgtt
    22021 catcagaacg cttcgcgctt gattcctggc tttgcatgcg tttgtactgc tcaactaccg
    22081 cacctgaatc aaccatgaca gcgtcgatgg acgaaccacc gccgcctccg gctgaagctt
    22141 ctatattctc atcgaacgaa ctccagatca gcgccgcaaa taagatgaca tgcagcactg
    22201 ctgaaataat tatcgcccgc ttgagcttgt cgttttgttc ggttgccttt gacactctcg
    22261 gtttccaaaa actgttcgcc tgttacccgc tctctttcaa gcaagggaaa cgcagatgtt
    22321 tagataggct gcgtcattaa accaaccgat ttcacacccg cactatgtaa caagttcagt
    22381 gctttaatta tttcatcgta aggcacatct tttgcgccac cgatcagaaa gaccgttttc
    22441 gggttggcct tgaagcggct ggacacttcc gccaccacct gctctggtgg taaacgctcc
    22501 aggcgatctt tctcaaccac cacggtgtac tgaccaatac cagacacttc aacaatcact
    22561 ggcggattat cgttactgct caccgcctgt gattcagtag cgtctggcag atcgacctcc
    22621 acgctctggg tgatgatggg cgctgtcgcc atgaagatca gcaacagcac cagcagtacg
    22681 tccagcaacg gtacaatgtt gatttcggac ttaagttcgc gacgacctcg tccacgcgct
    22741 ctggccatga cttacccctt attgctctcg ctaacggtaa acgcctggcg gtgcagaatc
    22801 gcggtaaact cttccataaa gttgtcgtaa ttcagttcca gtttgtttac gcgctggttg
    22861 aggcggttgt aggccataac tgccgggata gcggcaaaca gaccaattgc agtcgcaatc
    22921 aacgcttctg cgataccggg cgcaaccatt tgcagtgttg cttgttttac cgccccgagg
    22981 gcgataaagg catgcatgat cccccagacc gtaccaaaca gaccaatata cgggctgatg
    23041 gagccaaccg taccgaggaa cggaatgtgc gtttccagat tttcaagttc acggttcatg
    23101 gagatacgca tagcacgcga cgccccttcc actacggctt ccggcgcatg gctattggca
    23161 cgatgcaggc gcacaaactc tttgaacccg ctgtaaaata tttgttccga accagtcaga
    23221 ttatcccgtt tcccctgact ctcttgatag aggcgagaga gttcgattcc agaccagaat
    23281 ttatcttcaa acgcttcggc ttcgcgcgcc gctgcgttaa gaatacgggt ccgctggata
    23341 ataatggccc aggatgcgat tgaaaaacca atcaaaatca acatgataag tttaaccaga
    23401 aggctagcct tcaggaacaa atcaaggata ttcatgtcag tcactgctta aactccgcga
    23461 caatagactt gggaagcgca cgaggcttca ttttgagtgg gtcaacgcaa acaaccagaa
    23521 cctctgcttc attcagcaaa gtattctcgg cgttgacaat acgttgcgtg aaaaccaaag
    23581 aggtgccacg cattgatgtt atttcagtct gtatttcgag catatcgtcg agccgcgcag
    23641 gtgcgtaata ttccaccgtc attttacgta ccacaaaggc aacgcgttca gccatcagcg
    23701 cctgctgact gaagtgatga tgacgcagca tctctgtgcg tgctctttca taaaaagcga
    23761 cgtaactggc gtggtacacc acaccaccgg catcggtatc ttcatagtag acgcgagccg
    23821 gccatcgaaa cagcgttgta ttcactttac atcccggtaa tgcaacaaaa gttagagctt
    23881 ttaaacgctg ctactatacg cgcgcgattg aggtttggga atgagggcaa gttaagggag
    23941 cgtaaaaatt tatgggcctg gagcggccca taatttttta aagagaattc tgatttaaaa
    24001 gaagaagaaa atcagcccga taatgagaac aatatcggca agcaatgggc aaaaaatccc
    24061 ttgccaaaga accttctgcg gacgaaagcc cacgccgtga atcacaccag cacagacggc
    24121 ccacatcagc aataaaccat gccagatttc cagttcactg gtcttcgcgg caaaacgaga
    24181 tgggtcccaa aacatacatc ctgctaacag aagcgccatc acgaaggaaa gcgcccgcag
    24241 ggggcgcttg tccattaccg catacaaggt cgcgataatc ttactcatca gatgtcttct
    24301 tgaccggctt tgcctgattc gacgtgttca agcgccagcg cggtgattac cccaaacgaa
    24361 caggcaagaa gcgttcccag aatccatgcg aaataccaca tttttagctc cttacttagt
    24421 acagagagtg ggtgttacgt tcaatatctt ctttggtgat acgaccgaac attttccagt
    24481 aacaccaggc ggtgtagagc agaatgatcg gtaccagaac caccgcaacc caggtcatga
    24541 cgttaagcgt cagctggctg gaagttgcat cccacattgt cagacttgcg ttcatcatgg
    24601 tgctggacgg catcacaaac gggaacattg cgataccggc tgtcaggatg atgcaggcca
    24661 gcgtcaggga ggagaacaca aacgcccacg cggctttatc catacgtgca gtcaggatgg
    24721 tcagcagcgg cagaaccaca cccagtgccg gaatagccca cagaattggc gtgttgttga
    24781 agttaaccag ccatgcgcca gcttcacgaa ccacttcttt attcagtggg ttagaggctg
    24841 cgtaatggtc cattgtcgat ttcacgacat aaccatcgat accgtacatc acccatacgc
    24901 cagccagtgc gaaacagacc agtgtcacca gcgcagccac ctgagccgtt gcacgggtac
    24961 gcaggtgcag ttcgcccacg gtacgcattt gcagataggt tgcgccctga gtaatgatca
    25021 tccctacgct caccacgcct gccagcaggc cgaacgggtt aagcaactgg aagaagttac
    25081 cggtgtagta cagacgcaga tattcatcaa cgttgaacgg tacgccctgc aacaggttac
    25141 cgaacgcaac accaattacc agcggcggaa cgaagctacc aatgaagatg ccccagtccc
    25201 acatgttacg ccagcgggtt tcttcaatct tggagcggta gtcaaaaccg accggacgga
    25261 agaacaaaga cgccagcacg aggatcatcg ccacatagaa gccggagaac gcagcggcat
    25321 agaccatcgg ccaggcagca aagagtgcgc cgcccgcggt gatcagccaa acctggttac
    25381 cgtcccagtg tggtgcaatg gagttaatca taattcgacg ctcggtgtcg ttacgaccga
    25441 ggaaacgggt gagcatgccc acccccatgt cgaaaccgtc agtgactgca aaaccaatca
    25501 gcagaacgcc aaccagcagc caccagataa aacgcaatac ttcataatcg atcatttgac
    25561 gactcctgtc ttagcgtgcc ggctgagtag tcgtggaaga ctgctcaaag tgatagcgac
    25621 cggttttcag gctgcttggg ccgaggcgtg caaatttgaa cattaagaac aattctgcca
    25681 ccaggaacag ggtatacagg ccgcaaatca gcaccattga gaagatgaga tcgcctgcgg
    25741 tcagtgacga attcgccaca gctgtcggca gcacttcacc gatagcccac ggttggcggc
    25801 catattcagc cacgaaccag cccgcttcta cagcaatcca cggcagcgga ataccgtaca
    25861 gcgcggcgcg cagcagccat tttttctcgc caatgcggtt gcggatgaca ctccagaaag
    25921 agagcgcgat gattgccagc agcaggaagc cacacgccac cataatacgg aacgcgaagt
    25981 acagcggcgc tacacgcgga atggagtctt tagttgcctg ttgaatctgc gcttcagtcg
    26041 catcagccac gtttggcgta tagcgtttca gcagcagacc gtaaccgagg tctttcttca
    26101 tgctattgaa ctggtcacga accgcctggt cggtagaacc agaacgcagt tgttcgagca
    26161 gagagtacgc cttcatcccg ttacgaatgc gttcttcatg ctgcaccatc agctctttca
    26221 ggccgataac cggggtatcc acggaacgcg ttgcaatgat gcccagtgcg taagggatct
    26281 gaatcgcaaa tttgttcgtc tcctcttcct gatcaggaat gccgaacaga gtaaaggcag
    26341 caggcgcagg ttgcgtttcc cactcggctt caatagcagc cagtttggtt ttctgcacgt
    26401 cgcccatttc gtagccggat tcatcaccca gaacaataac agacagaaca gcagccatac
    26461 cgaagctggc agcgatagca aaggagcgtt tagcgaaggc gaagtcacga cctttcagca
    26521 tataccatgc gctgataccg aggatgaaca tcgcgccagt cacataacca gacgctacag
    26581 tgtgaacgaa tttcacctga gcaaccgggt taagcaccag ctcggagaag ctcaccatct
    26641 ccatacgcat agtttcaaag ttgaaatcgg acgcgattgg gttttgcatc cagccgttcg
    26701 caaccagaat ccacagtgcg gacaggtttg aaccgagcgc caccagccag gtgacacaca
    26761 tatgctgaac tttacccaga cgatcccaac cgaagaagaa cagacctaca aaggtggatt
    26821 cgaggaagaa ggccatcaga ccttcgattg ccagcggcgc accgaagata tcccctacat
    26881 agtgggaata gtaagaccag ttagtcccga actggaactc catggtcaga ccggtagcca
    26941 cacccagagc gaagttgata ccaaacaact tgccccagaa cttggtcata tctttataaa
    27001 tctgtttgcc ggagaggacg tagaccgttt ccataatggc cagcaggaac gccataccga
    27061 gcgtcagtgg cacaaaaagg aagtggtaca tcgcggtcaa ggcaaactgt aagcgcgaca
    27121 gttcgactat atctaacatc atgactcctt gctcatcgca tgaagactcc gagagtgaac
    27181 cccgttagaa agggtcacac gcatgcccca atagaaattt gtttgaacac tttcatcata
    27241 ccatgtgaat gcacacaaaa acggcgtaaa gaaaggttgc aaacatgtta ataaaaactc
    27301 aaattgatcc cacgtatata ttacgccgca aaatccttac aataaacagg tttttgttga
    27361 agcaaatttg catttttcga cggtgatcaa tttatagcta aattaccgcc tttcagccaa
    27421 tttgatcgag aacaatttat ctctttttga tgcccatttc caagacttat acattgataa
    27481 atatcaattc ctacaaatta tgttaatcat gtttcaataa ggtaacttta gtgacattta
    27541 tgtttaaaat gtgtgagtta taaggctgaa attagtttcg gttggcaatt aaagataaaa
    27601 agagacgaag caaaaacagc acggttgacc ttaattcttt ttttggtcac tggctaatac
    27661 gacgcagagt ttcaggatta ctaataaagg cataaatcca cccccgccga tattaacatt
    27721 taattaactt ataattatat tataattaac tcacccaggg ttattatttt gttaaaaata
    27781 aagccacata tacgtggctt gagagtgaag ataaacgcaa aattacctga tgcgctacgc
    27841 ttgccagtgt ctacatcatc tctgcaatat attgaatttg cctgcttttg tagaccgaat
    27901 aaagcgttca tgccgtatcc ggcatgaaca aagcgccctt tgtcaacaat ctggccgcgc
    27961 atatgtggct tcggtttgat tgctattcag gcaagccggt aactgaacgt ccgtgactgg
    28021 ccgggtaaaa aaggccccga tagatttgaa ccttgatttt cctcggtggt aatgtgttca
    28081 tccatcatcg tttctgagca agaaatcacc tcgcgactga aagcaacagt cgcatcacag
    28141 gttgctgatt cagccggatt aaacagccgt aaaatcactt cttgtcggtc ttcagctttc
    28201 ttaagtgcgc ttatcaggca tcccactggg ggcattttca acaaactata actttccggc
    28261 acgttgaatc cggctttgtt gagcttcatc gcatcccatg ggattttgtt gtaacactgt
    28321 actggagtca gccatgctcg cgcctgctga gctacaccag cggcggttgg cgtaccggta
    28381 taactcaata aacttaggcg acaagaaagc agaccacgta gttgtgagtc cgggactggc
    28441 attttaattc ccgaaggccg cccaggcctt aaaagcagat cttctttgcc cagtaagccc
    28501 acgccacgca gcaacgtaat ggcaaaggtt ttcttctctt caccgatgac ttcaaattca
    28561 cgtaaccctt cgctaaagac agccatgccg ttacgccctt cctgtaaggc aacatagttg
    28621 agcatattcc ataccggaac cggcgcttct ttccagcctt cttgctgcca gttgttcatt
    28681 gcactgtcgt tcacggggcg cgttagcgaa ccaaactgcg tatctgccag aacactgtcg
    28741 gtgttaaaag gtgtagggac caggacacga aggcgatgat cgtcagcctg gttatcaagg
    28801 ttgatatcca catcaatacg cctgctgtta tgactaagag tgacaaccaa caccacccct
    28861 actctgccag tggattgccg ggcgctgcgt tctgacaaat tgagcggcac tgccatgtca
    28921 tagcggataa cagccctgct ctgccaggct tcatgaataa tatcgcattg cggtttcgcg
    28981 ttcgctgcgg taattaccca ctcttctttt gcgggtgaat agtcatattc atcaccatca
    29041 tcagagcttt cttcaatt
//
LOCUS       DADMJB010000033        28686 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.033, whole genome shotgun sequence.
ACCESSION   DADMJB010000033 DADMJB010000000
VERSION     DADMJB010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 28686)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28686)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28686
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.033"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            44..811
                     /gene="hdhA"
                     /locus_tag="JN078_001333"
     CDS             44..811
                     /gene="hdhA"
                     /locus_tag="JN078_001333"
                     /EC_number="1.1.1.159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-alpha-hydroxysteroid dehydrogenase"
                     /protein_id="HAY9040591.1"
                     /translation="MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN
                     ADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPK
                     PFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYA
                     SSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRL
                     GQPQDIANAALFLCSPAASWVSGQILTVSGGGVQELN"
     gene            1040..1618
                     /locus_tag="JN078_001334"
     CDS             1040..1618
                     /locus_tag="JN078_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAY9040592.1"
                     /translation="MMDNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAIS
                     PGTLYHHFISKEALIQAIILQDQERAREPIEGIHFVDYMVESIVSLTHEAFGQRALVV
                     EIMAEGMRNPQVAAMLKNKHMTITEFVAQRMRDAQQKGEISPDINTSMTSRLLLDLTY
                     GVLADIEAEDLAREASFAQGLRAMIGGILTAS"
     gene            2006..3806
                     /gene="uidA"
                     /locus_tag="JN078_001335"
                     /pseudo
     CDS             2006..3806
                     /gene="uidA"
                     /locus_tag="JN078_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416134.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucuronidase"
     gene            3803..5176
                     /gene="uidB"
                     /locus_tag="JN078_001336"
     CDS             3803..5176
                     /gene="uidB"
                     /locus_tag="JN078_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronide transporter"
                     /protein_id="HAY9040593.1"
                     /translation="MNQQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVACVGAA
                     AAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTD
                     WSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFV
                     CLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLK
                     ISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYERYVLNDTGLFTVLVLVQNLVG
                     TVASAPLVPGMVARSGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG
                     VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYI
                     ANQVQTPEVIMGIRTSIALVPCGFMLLAFVIIWFYPLTDKKFKEIVVEIDNRKKVQQQ
                     LISDITN"
     gene            5215..6480
                     /gene="uidC"
                     /locus_tag="JN078_001337"
     CDS             5215..6480
                     /gene="uidC"
                     /locus_tag="JN078_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416132.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronide uptake porin UidC"
                     /protein_id="HAY9040594.1"
                     /translation="MRKIVAMAVICLTAASGLTSAYAAQLADDEAGLRIRLKNELRRA
                     DKPSAGAGRDIYAWVQRGLFDFNSGYYSNIIGVEGGAYYVYKLGARADMSTRWYLDGD
                     KSFGFALGAVKIKPCENSLLKLGRFGTDYSYGSLPYRIPLMAGSSQRTLPTVSEGALG
                     YWALTPNIDLWGMWRSRVFLWTDSTTGIRDEGVYNSQTGKYDKHRARSFLAASWHDDT
                     SRYSLGASVQKDVSNQIQSILEKSIPLDPNYTLKGELLGFYAQLEGLSRNTSQPNETA
                     LVSGQLTWNAPWGSVFGSGGYLRHAMNGAVVDTDIGYPFSLSLDRNREGMQSWQLGVN
                     YRLTPQFTLTFAPIVTRGYESSKRDVRIEGTGILGGMNYRVSEGPLQGMNFFLAADKG
                     REKRDGSTLGDRLNYWDVKMSIQYDFMLK"
     gene            complement(6706..8214)
                     /locus_tag="JN078_001338"
     CDS             complement(6706..8214)
                     /locus_tag="JN078_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HAY9040595.1"
                     /translation="MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQL
                     KLTAPESNLEVSYQNYHRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFP
                     LAQLKKLNLIPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLK
                     PLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLK
                     TDGSSTLASFGERVGNQKLSLEKMTISVEGKELALLEGMEISGKSDLVNDGKTINSQL
                     DYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYNAQTQALLAQPEIANNPELY
                     QEKVTEAFFSALPLMLKGDPVITVAPLSWKNSQGESALNLSLFLKDPATTKEAPQTLA
                     QEVDRSVKSLDAKLTIPVDMATEFMTQVAKLEGYQEDQAKKLAKQQVEGASAMGQMFR
                     LTTLQDNTITTSLQYTNGQITLNGQKMSLEDFVGMFAMPALNVPAVPAIPQQ"
     gene            complement(8315..9490)
                     /gene="manA"
                     /locus_tag="JN078_001339"
     CDS             complement(8315..9490)
                     /gene="manA"
                     /locus_tag="JN078_001339"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416130.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase"
                     /protein_id="HAY9040596.1"
                     /translation="MQKLINSVQNYAWGSKTALTELYGMENPSSQPMAELWMGAHPKS
                     SSRVQNAAGDIVSLRDVIESDKSTLLGEAVAKRFGELPFLFKVLCAAQPLSIQVHPNK
                     RNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSEIVSLLQP
                     VAGAHPAIAHFLQQPNAERLSELFASLLNMQGEEKSRALAILKSALDSQQGEPWQTIR
                     LISEFYPEDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAG
                     LTPKYIDIPELVANVKFEAKPANQLLTQPVKQGAELDFPIPVDDFAFSLHDLSDKETT
                     ISQQSAAILFCVEGDATLWKGSQQLQLKPGESAFIAANESPVTVKGHGRLARVYNKL"
     gene            9689..11335
                     /locus_tag="JN078_001340"
     CDS             9689..11335
                     /locus_tag="JN078_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000066594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase"
                     /protein_id="HAY9040597.1"
                     /translation="MSNKPFHYQAPFPLKKDDTEYYLLTSEHVSVSEFEGQEILKVAP
                     EALTLLARQAFHDASFMLRPAHQQQVADILRDPEASENDKYVALQFLRNSDIAAKGVL
                     PTCQDTGTAIIVGKKGQRVWTGGCDEAALARGVYNTYIEDNLRYSQNAPLDMYKEVNT
                     GTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALLTPGKLKNYLVEKMRT
                     LGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNEHGQAFRDVELEKEL
                     LIEAQNLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINRQGIW
                     IEKLEHNPGKYIPEELRKAGEGEAVRVDLNRPMKEILAQLSQYPVSTRLSLNGTIIVG
                     RDIAHAKLKERMDNGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGPTTAGRMDSYVDQ
                     LQAQGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKSLECVEYPEL
                     GMEAIWKIEVEDFPAFILVDDKGNDFFQQIQLTQCTRCVK"
     gene            11478..12881
                     /gene="fumC"
                     /locus_tag="JN078_001341"
     CDS             11478..12881
                     /gene="fumC"
                     /locus_tag="JN078_001341"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HAY9040598.1"
                     /translation="MNTVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSL
                     IHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQS
                     NMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQL
                     IPQLKTLTQTLSEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYS
                     LPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQ
                     AHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALT
                     MLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIE
                     PNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEF
                     DSWVRPEQMVGSMKAGR"
     gene            complement(12878..13807)
                     /gene="tus"
                     /locus_tag="JN078_001342"
     CDS             complement(12878..13807)
                     /gene="tus"
                     /locus_tag="JN078_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication terminus site-binding protein"
                     /protein_id="HAY9040599.1"
                     /translation="MARYDLVDRLNTTFRQMEQELAAFAAHLEQHKLLVARVFSLPEV
                     KKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQV
                     DNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRSLT
                     VLHDPATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQD
                     IAALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGE
                     LLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD"
     gene            complement(13883..15184)
                     /gene="rstB"
                     /locus_tag="JN078_001343"
     CDS             complement(13883..15184)
                     /gene="rstB"
                     /locus_tag="JN078_001343"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     RstB"
                     /protein_id="HAY9040600.1"
                     /translation="MKKLFIQFYLLLFVCFLVMSLLVGLVYKFTAERAGKQSLDDLMN
                     SSLYLMRSELREIPPHDWGKTLKEMDLNLSFDLRVEPLSKYHLDDISMHRLRGGEIVA
                     LDDQYTFLQRIPRSHYVLAVGPVPYLYYLHQMRLLDIALIAFIAISLAFPVFIWMRPH
                     WQDMLKLEAAAQRFGDGHLYERIHFDEGSSFERLGIAFNQMADNINALIASKKQLIDG
                     IAHELRTPLVRLRYRLEMSDNLSAAESQALNRDISQLEALIEELLTYARLDRPQNELH
                     LSEPDLPLWLSTHLADIQAVTPDKTVRIKTLVQGHYAALDMRLMERVLDNLLNNALRY
                     CHSTVETSLLLSGNRATLIVEDDGPGIAPENREHIFEPFVRLDPSRDRSTGGCGLGLA
                     IVHSIALAMGGTVNCDTSELGGARFSFSWPLWHNIPQFTSA"
     gene            complement(15188..15907)
                     /gene="rstA"
                     /locus_tag="JN078_001344"
     CDS             complement(15188..15907)
                     /gene="rstA"
                     /locus_tag="JN078_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416125.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator RstA"
                     /protein_id="HAY9040601.1"
                     /translation="MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRE
                     NPDLVLLDIMLPGKDGITICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKT
                     MPPAVLLARLRLHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEI
                     SLSTADFELLWELATHAGQIMDRDALLKNLRGVSYDGLDRNVDVAISRLRKKLLDNAA
                     EPYRIKTVRNKGYLFAPHAWE"
     gene            16033..16356
                     /locus_tag="JN078_001345"
     CDS             16033..16356
                     /locus_tag="JN078_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlpM family protein"
                     /protein_id="HAY9040602.1"
                     /translation="MKAALGVLVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVAS
                     ERGIEALRATIIFSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIIC
                     WIKLH"
     gene            complement(16353..17075)
                     /gene="folM"
                     /locus_tag="JN078_001346"
     CDS             complement(16353..17075)
                     /gene="folM"
                     /locus_tag="JN078_001346"
                     /EC_number="1.5.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydromonapterin reductase"
                     /protein_id="HAY9040603.1"
                     /translation="MGKAQPLPILITGGGRRIGLALAWHFINQKQPVIVSYRTHYPAI
                     DGLIKAGAQCIQADFSTNDGVMAFADEVLKSTHGLRAILHNASAWMAEKLGAPLADVL
                     ACMMQIHVNTPYLLNHALERLLRGHGHAASDIIHFTDYVVERGSDKHIAYAASKAALD
                     NMTRSFARKLAPEVKVNSIAPSLILFNEHDDAEYRQQALNKSLMKTAPGEKEVIDLVD
                     YLLTSCFVTGRSFPLDGGRHLR"
     gene            complement(17112..18494)
                     /locus_tag="JN078_001347"
     CDS             complement(17112..18494)
                     /locus_tag="JN078_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAY9040604.1"
                     /translation="MEKKLGLSALTALVLSSMLGAGVFSLPQNMAAVASPAALLIGWG
                     ITGAGILLLAFAMLILTRIRPELDGGIFTYAREGFGELIGFCSAWGYWLCAVIANVSY
                     LVIVFSALSFFTDTPELRLFGDGNTWQSIVGASALLWIVHFLILRGVQTAASINLVAT
                     LAKLLPLGLFVVLAMMMFKLDTFKLDFTGLVLGVPVWEQVKNTMLITLWVFIGVEGAV
                     VVSARARNKRDVGKATLLAVLSALGVYLLVTLLSLGVVARPELAEIRNPSMAGLMVEM
                     MGPWGEIIIAASLIVSVCGAYLSWTIMAAEVPFLAATHKAFPRIFARQNAQAAPSASL
                     WLTNICVQICLVLIWLTGSDYNTLLTIASEMILVPYFLVGAFLLKIATRPLHKAVGVG
                     ACIYGLWLLYASGPMHLLLSVVLYAPGLLVFLYARKTHTHDNVLNRQEMVLIGMLLIA
                     SVPATWMLVG"
     gene            complement(18680..19624)
                     /locus_tag="JN078_001348"
     CDS             complement(18680..19624)
                     /locus_tag="JN078_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HAY9040605.1"
                     /translation="MKLKNTLLASALLSATAFSVNAATELTPEQAAAVKPFDRVVVTG
                     RFNAIGEAVKAVSRRADKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNR
                     VINGVVELPKDQAVLIEPFDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDA
                     NQGGNQRITAFIYKKDAKKRIVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTA
                     SPSSEVGRFFETQSSKGGRYTVTLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTE
                     VSYQVAKRAAKKGAKYYHITRQWQERGNNLTVSADLYK"
     gene            20147..21679
                     /gene="pntA"
                     /locus_tag="JN078_001349"
     CDS             20147..21679
                     /gene="pntA"
                     /locus_tag="JN078_001349"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HAY9040606.1"
                     /translation="MRIGIPRERLTNETRVAATPKTVEQLLKLGFTVAVESGAGQLAS
                     FDDKAFVQAGAEIVEGNSVWQSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQNPELM
                     QKLAERNVTVMAMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAA
                     GKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE
                     EAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMK
                     TGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLPGRLPTQSSQLYGTNLVNL
                     LKLLCKEKDGNITVDFDDVVIRRVTVIRAGEITWPAPPIQVSAQPQAAQKAAPEVKTE
                     EKCACSPWRKYALMALAIILFGWLASVAPKEFLGHFTVFALACVVGYYVVWNVSHALH
                     TPLMSVTNAISGIIVVGALLQIGQGGWVSFLSFIAVLIASINIFGGFTVTQRMLKMFR
                     KN"
     gene            21690..23078
                     /gene="pntB"
                     /locus_tag="JN078_001350"
     CDS             21690..23078
                     /gene="pntB"
                     /locus_tag="JN078_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000014033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HAY9040607.1"
                     /translation="MSGGLVTAAYIVAAILFIFSLAGLSKHETSRQGNNFGIAGMAIA
                     LIATIFGPDTGNVGWILLAMVIGGAIGIRLAKKVEMTEMPELVAILHSFVGLAAVLVG
                     FNSYLHHDAGMAPILVNIHLTEVFLGIFIGAVTFTGSVVAFGKLCGKISSKPLMLPNR
                     HKMNLAALVVSFLLLIVFVRTDSVGLQVLALLIMTAIALVFGWHLVASIGGADMPVVV
                     SMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFG
                     TDGSSTGDDQEVGEHREITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLR
                     ARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGAND
                     TVNPAAQDDPKSPIAGMPVLEVWKAQDVIVFKRSMNTGYAGVQNPLFFKENTHMLFGD
                     AKASVDAILKAL"
     gene            complement(23103..24008)
                     /gene="tqsA"
                     /locus_tag="JN078_001351"
                     /pseudo
     CDS             complement(23103..24008)
                     /gene="tqsA"
                     /locus_tag="JN078_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416118.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2 transporter TqsA"
     gene            24185..25414
                     /locus_tag="JN078_001352"
     CDS             24185..25414
                     /locus_tag="JN078_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HAY9040608.1"
                     /translation="MSRAMNKLSDTLLRKLHGKPAEKNTFYSDGGNLSVKYLTSGKLT
                     WYFIYRAGTGRETRPERIKLGSYPDLSLKSAREKAAQCRAWLAEGKNPRHELNYTVQE
                     ALKPVTVGDALTYWLEYYVKENRVDYIALKRRLNNHVIQQIGAMPLDKCELRHWLACF
                     DQVAKRTPVTAGFVLQACKQALKFCRRRRYAISNVLDDLNVADVGKKPDISERVLSNK
                     ELGELLQALDKKIFSPYYVALIRLLIVFGARTVELRLSEIGEWDFTEMLWTVPKEHSK
                     TKVAIFRPIPEAILPFVTQLVEQNRHTGLLLGEVKQEASVSQYGRLAHRRLNHPHWSL
                     HDIRRTFTTMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALDMWTERLGI
                     LAGTHENVTTLPVARRK"
     gene            25781..25969
                     /locus_tag="JN078_001353"
     CDS             25781..25969
                     /locus_tag="JN078_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001443601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family transcriptional regulator"
                     /protein_id="HAY9040609.1"
                     /translation="MLSTDRFIREKECEKLTGLSRTCRYRLEKAGQFPSRRKLGGRSV
                     GWSLSEVLAWKDSCKAVH"
     gene            26027..27049
                     /locus_tag="JN078_001354"
     CDS             26027..27049
                     /locus_tag="JN078_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001429961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host cell division inhibitor Icd-like protein"
                     /protein_id="HAY9040610.1"
                     /translation="MKIEYTPERGRGFVRPGETEKQQNWGFSGIKKAAPKWSRLSEQI
                     TRCAVCVCDPKHKHGDDSRYQAGGQCNQSGSVRCHTCNERFSLYSLRNCSRAKAHGAN
                     LSDSCSIFLRRLFRAGDNVLVNSLSVIVLSCIAMRRNTLHHGADGDYSGSLALRRWRY
                     STSRFNAAVTNCPVLSPGIFTASTLFITSCGTLAATVCDFAFTAFVAMWCTPHKKQMQ
                     YAGKKISVQHLTCLTPGFKLVFNTLLAQGAETTKPGSALTLTGLLTTNDSESIEVAMR
                     NHTIHPQGRDSHNLNKYIWRFIALSTAQPRVITIEATSEQEARQQSPAGCVMVFAARI
                     RQGVGL"
     gene            27046..27276
                     /locus_tag="JN078_001355"
     CDS             27046..27276
                     /locus_tag="JN078_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000076670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040611.1"
                     /translation="MSQEITLQQAAERAHQIEVICALAEDYPGMMTDSESGAIIGLLK
                     RLSGEVCVFLSDEQERRTLISNEKKCGGVHVQ"
     gene            27266..27490
                     /locus_tag="JN078_001356"
     CDS             27266..27490
                     /locus_tag="JN078_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000336139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040612.1"
                     /translation="MCNKTTPDAAAAALTTLMHALIDISVIADRAHKHAARESECIFH
                     YLTFVQLKADQALDKAGKIIMADVQEVHHA"
     gene            27483..28061
                     /locus_tag="JN078_001357"
     CDS             27483..28061
                     /locus_tag="JN078_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000551752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040613.1"
                     /translation="MHNLSISDLNSIQFDEKFTGQLLVNVENGRIVRNYHLPDGAIAG
                     SVEALLELAERARLIKPSTSHHDDDLHFTGCMVSHYENGVEVSCERLRDDCCFGTLPE
                     FIELLTSCGYQVIQGVNMRDDRFNSLKQEFSGVPDDAADALSSMPELIRAAFFLLSTR
                     EYKSTGLDVLNIVADYADFVTEVILRKTTDGD"
     gene            28063..28296
                     /locus_tag="JN078_001358"
     CDS             28063..28296
                     /locus_tag="JN078_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040614.1"
                     /translation="MRDIYLETIDRAFLALSHSENMLEILRIWLETLGDNERDKQKSR
                     IATALITLLEPVIMELQEIDLLHDRYKEQHTGE"
     gene            28302..28601
                     /locus_tag="JN078_001359"
     CDS             28302..28601
                     /locus_tag="JN078_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4222 domain-containing protein"
                     /protein_id="HAY9040615.1"
                     /translation="MKLKYSGLTASGNTHPKFTRGDIYRDQYGGTVTIKGVEERRITY
                     RREGYEYDCVMPVYQFRRDFSLVQAAPRSKPTSREKARANIQEIKKMLNVFRGKK"
     gene            28598..>28686
                     /locus_tag="JN078_001360"
     CDS             28598..>28686
                     /locus_tag="JN078_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707046.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HAY9040616.1"
                     /translation="MKSAPNLKKQPYDKMTEVIIFAGSDAWAHA"
BASE COUNT         7364 a         6815 c         7408 g         7099 t
ORIGIN      
        1 aggcggtgcc ttttattttt actgaagttc acaggaggtt tatgtgttta attctgacaa
       61 cctgagactc gacggaaaat gcgccatcat cacaggtgcg ggtgcaggta ttggtaaaga
      121 aatcgccatt acattcgcga cagctggcgc atctgtggtg gtcagtgata ttaacgccga
      181 cgcagctaac catgttgtag acgaaattca acaactgggg gggcaggcat ttgcctgccg
      241 ttgtgatatt acttccgaac aggaactctc tgcactggca gactttgcta tcagtaagct
      301 gggtaaagtt gatattctgg ttaacaacgc cggtggcggt ggacctaaac cgtttgatat
      361 gccaatggcg gattttcgcc gtgcttatga actgaatgtg ttttcttttt tccatctgtc
      421 acaacttgtt gcgccagaaa tggaaaaaaa tggcggtggc gttattctga ccatcacttc
      481 tatggcggca gaaaataaaa atataaacat gacttcctat gcatcatcta aagctgcggc
      541 cagtcatctg gtcagaaata tggcatttga cctgggtgaa aaaaatattc gggtgaatgg
      601 cattgcgccg ggggcaatat taaccgatgc cctgaaatcc gttattacac cagaaattga
      661 acaaaaaatg ttacagcaca cgccgatcag acgtctgggt caaccgcaag atattgctaa
      721 cgcggcgctg ttcctttgct cgcctgcagc cagctgggta agcggacaaa ttctcaccgt
      781 ctccggtggt ggggtacagg agctcaatta atacactaac gaaccggtaa acagccgtat
      841 gtgttgttta ccgggatagc gtgtgcaatt catcaacgtc tctgctaaac aactggcagc
      901 caaatcacgg ctattggtta accaatagct ggatgaaaag catacgaata gagtgtgcct
      961 tcgcactatt caacagcaat gataggcgct cacctgacaa cgcggtaaac tagttattca
     1021 cgctaactat aatggtttaa tgatggataa catgcagact gaagcacaac cgacacggac
     1081 ccggatcctc aatgctgcca gagagatttt ttcagaaaat ggatttcaca gtgcctcgat
     1141 gaaagccatc tgtaaatcct gcgccattag tcccgggacg ctttatcacc atttcatctc
     1201 caaagaagcc ttgattcagg cgattatctt acaggaccag gagagggcgc gggaaccgat
     1261 tgaagggatt cattttgttg actatatggt cgagtctatt gtctctctca cccatgaagc
     1321 ctttgggcaa cgggcgctgg tggtcgaaat tatggcggaa gggatgcgta acccacaggt
     1381 cgccgccatg cttaaaaata agcatatgac gatcactgaa tttgttgccc agcggatgcg
     1441 tgatgcccag caaaaaggcg agataagccc agacatcaac acgtcaatga cttcacgttt
     1501 actgctggat ctgacctacg gtgtactggc cgatatcgaa gcggaagatc tggcgcgtga
     1561 agcgtcgttt gctcagggat tacgcgcgat gattggcggt atcttaaccg catcctgatc
     1621 ctctcatttc gcgggctggt gataactgtg cccgcgtttc atactttaat ttccctgtac
     1681 aaaatacaat ctagccggga tcggagaatt cccccccaaa atattcaccg tagccatatg
     1741 tcatgagagt ttatcgttct caagatgctc gaacgagcgt tcgattgctt attttatggc
     1801 ttctgtcaac gctgttttaa agattaatgc gatctatatc acgctgtgcg tattgcagat
     1861 tttggttttt tgatcgcggt gtcagttctt tttatttcca tttctcttcc atgggtttct
     1921 cacagataac tgtgtgcaac acagaattgg ttaactaatc agattaaagg ttgaccagta
     1981 tttttatttg aatgaggagt cccttatgtt acgtcctgta gaaaccccaa cccgtgaaat
     2041 caaaaaactc gacggcctgt gggcattcag tctggatcgc gaaaactgtg gaattgatca
     2101 gcgttggtgg gaaagcgcgt tacaagaaag ccgggcaatt gctgtgccag gcagttttaa
     2161 cgatcagttc gccgatgcag atattcgtaa ttatgtgggc aacgtctggt atcagcgcga
     2221 agtctttata ccgaaaggtt gggcgggcca gcgtatcgtg ctgcgtttcg atgcggtcac
     2281 tcattacggc aaagtgtggg tcaataatca ggaagtgatg gagcatcagg gcggctatac
     2341 gccatttgaa gccgatgtca cgccgtatgt tattgccggg aaaagtgtac gtatcaccgt
     2401 ttgtgtgaac aacgaactga actggcagac tatcccgccg ggaatggtga ttaccgatga
     2461 aaacggcaag aaaaagcagt cttacttcca tgatttcttt aactatgccg ggatccatcg
     2521 cagcgtaatg gtctacacca cgccgaacac ctgggtggac gatatcaccg tggtgacgca
     2581 tgttgcgcaa gactgtaacc acgcgtctgt tgactggcag gtggtagcaa atggtgatgt
     2641 cagcgttgaa ctgcgtgatg cggatcagca ggtggttgca actggacaag gtaccagcgg
     2701 gactttgcaa gtggtgaatc cccacctctg gcaaccgggt gaaggttatc tctatgaact
     2761 gtgcgtcaca gccaaaagcc agacagagtg tgatatctac ccgctgcgcg tcggcatccg
     2821 gtcagtggca gtgaaggacg aacaaccaca aaccgttcta ctttactggc tttggtcgtc
     2881 atgaagatgc ggatttgcga ggcaaaggat tcgataacgt gctgatggtg cacgatcacg
     2941 cattaatgga ctggattggg gccaactcct accgaacctc gcattaccct tacgctgaag
     3001 agatgctcga gtgggcagat gaacatggca tcgtggtgat tgatgaaact gcagctgtcg
     3061 gctttaacct ctctttaggc attggtttcg aagcgggcaa caagccgaaa gaactgtaca
     3121 gcgaagaggc tgtcaacggg gaaactcagc aggcgcattt acaggcgatt aaagagctga
     3181 tagcgcgtga caaaaaccac ccaagcgtgg tgatgtggag tattgccaac gaaccggata
     3241 cccgtccgca aggtgcacga gaatatttcg cgccactggc ggaagcaacg cgtaaactcg
     3301 acccgacgcg tccgatcacc tgcgtcaatg taatgttctg cgacgctcac accgatacca
     3361 tcagcgatct ctttgatgtg ctgtgcctga accgttatta cggatggtat gtccaaagcg
     3421 gcgatttgga aacggcagag aaggtactgg aaaaagaact tctagcctgg caggagaaac
     3481 tgcatcagcc gattatcatc accgaatacg gcgtggatac gttagccggg ctgcactcaa
     3541 tgtacaccga catgtggagt gaagagtatc agtgtgcatg gctggatatg tatcaccgcg
     3601 tctttgatcg cgtcagcgcc ggcgtcggtg aacaggtatg gaatttcgcc gattttgcga
     3661 cctcgcaagg catattgcgc gttggcggta acaagaaggg gagcttcacc cgcgaccgca
     3721 aaccgaagtc ggcggctttt ctgctgcaaa aacgctggac tggcatgaac ttcggtgaaa
     3781 aaccgcagca gggaggcaaa caatgaatca acaactctcc tggcgcacca tcgtcggcta
     3841 cagcctcggt gacgtcgcca ataacttcgc cttcgcaatg ggggcgctct tcctgttgag
     3901 ttactacacc gacgtcgctt gcgtcggtgc cgctgcggcg ggcaccatgc tgttattggt
     3961 gcgggtattc gatgccttcg ccgacgtctt tgccggacga gtggtggaca gtgtgaatac
     4021 ccgctgggga aaattccgcc cgtttttact cttcggtact gcgccgttaa tgatcttcag
     4081 cgtgctggta ttctgggtac cgaccgactg gagccatagc agcaaagtag tgtatgcata
     4141 tttgacctac atgggcctcg ggctttgcta tagcctggtg aatattcctt atggttcact
     4201 tgctaccgcg atgacccaac aaccacaatc ccgcgcccgt ctgggcgcgg ctcgtgggat
     4261 tgccgcttca ttgacctttg tctgcctggc atttctgata gggccgagca ttaagaactc
     4321 cagcccggaa gagatggtgt cggtatacca tttctggacg attgtgctgg cgattgccgg
     4381 aatggtgctt tacttcatct gcttcaaatc gacgcgtgag aatgtggtac gtatcgttgc
     4441 gcagccgtca ttgaagatca gtctgcaaac cctgaaacgg aatcgcccgc tgtttatgtt
     4501 gtgcatcggt gcgctgtgtg tgctgatttc gacctttgcg gtcagcgcct cgtcgttgtt
     4561 ctacgagcgc tatgtgttaa atgataccgg gctgttcact gtgctggtac tggtgcaaaa
     4621 cttggttggt actgtggcat cggcaccgct ggtgccgggg atggtcgcga ggagcggtaa
     4681 aaagaatacc ttcctgattg gcgctttgct gggaacctgc ggttatctgc tattcttctg
     4741 ggtttccgtc tggtcactgc cggtggcgtt ggttgcgttg gccatcgctt caattggtca
     4801 gggcgttact atgactgtga tgtgggcact ggaagctgat accgtagaat acggtgaata
     4861 cctgaccggc gtgcgaattg aagggctcac ctattcacta ttctcattta cccgtaaatg
     4921 cggtcaggca atcggaggtt caattcctgc ctttattttg ggattaagcg gatatatcgc
     4981 caatcaggtg caaacgccgg aagttattat gggcatccgc acatcaattg ccttagtacc
     5041 ttgcggattt atgctactgg cattcgttat tatctggttt tatccgctca cggataaaaa
     5101 attcaaagaa atcgtggttg aaattgataa tcgtaaaaaa gtgcagcagc aattaatcag
     5161 cgatatcact aattaatatt caataaaaat aatcagaaca tcaaaggtgc aactatgaga
     5221 aaaatagtgg ccatggccgt tatttgcctg acggctgcct ctggccttac ctctgcttat
     5281 gcggcgcaac tggctgacga tgaagcggga ctacgcatca gactgaaaaa cgaattgcgc
     5341 agggcggata agcccagtgc tggcgcggga agagatattt acgcatgggt acagagagga
     5401 ttgttcgatt tcaatagtgg ttattattcc aatattattg gcgttgaagg cggggcatat
     5461 tatgtttata aattaggtgc tcgtgctgat atgagtaccc ggtggtatct tgatggtgat
     5521 aaaagttttg gctttgccct gggggcagta aaaataaaac cctgtgaaaa tagcctgctt
     5581 aaattaggtc gcttcgggac ggattatagt tatggtagct taccttatcg tattccgtta
     5641 atggctggca gttcgcaacg tacattaccg acagtttctg aaggagcatt aggttattgg
     5701 gctttaacac caaatattga tctgtgggga atgtggcgtt cacgagtatt tttatggact
     5761 gattcaacaa ccggtattcg tgatgaaggg gtgtataaca gccagacggg aaaatacgat
     5821 aaacatcgcg cacgttcttt tttagccgcc agttggcatg atgataccag tcgctattct
     5881 ctgggggcat cggtacagaa agatgtttcc aatcagatac aaagtattct cgagaaaagc
     5941 ataccgctcg acccgaatta tacgttgaaa ggggagttgc tcggctttta cgcgcagctc
     6001 gaaggtttaa gtcgtaatac cagccagccc aatgaaacgg cgttggttag tggacaattg
     6061 acctggaatg cgccgtgggg aagcgtattt ggcagtggtg gttatttgcg ccatgcaatg
     6121 aatggtgccg tggtggatac cgacattggc tatccctttt cattaagtct tgatcgtaac
     6181 cgtgaaggaa tgcagtcctg gcaattgggc gtcaactatc gtttaacgcc gcaatttaca
     6241 ctgacatttg caccgattgt gactcgcggc tatgaatcca gtaaacgaga tgtgcggatt
     6301 gaaggcacgg gtatcttagg tggtatgaac tatcgggtca gcgaagggcc gttacaaggg
     6361 atgaatttct ttcttgctgc cgataaaggg cgggaaaagc gcgatggcag tacgctgggc
     6421 gatcgcctga attactggga tgtgaaaatg agtattcagt atgactttat gctgaagtaa
     6481 gaaataacgc cggagagaaa aacctccggc gtttcagatt gttgacaaag tgcgcgtttt
     6541 ttatgccgga tgcggcgtaa acgccttatc cagcctacaa aaactcataa attcaaagta
     6601 ttgcaggaaa aggtaggcct gataagcgta gcgcatcagg caatctctgg tttgttttca
     6661 gatgaaaacg ccgaagtgaa aattctccgg cgttttggcc gtgaattact gctgcggaat
     6721 tgccggtaca gccggaacgt taagagctgg catcgcaaac atgccaacaa aatcttctaa
     6781 cgacattttc tgcccattta acgttatctg accgttagta tattgcaggc tggtggtgat
     6841 ggtattgtcc tgcaaggtgg tcagacggaa catctgcccc attgctgatg caccttcaac
     6901 ttgctgtttc gccagttttt tcgcttgatc ttcctgataa ccttccagct tcgctacctg
     6961 agtcataaac tcagttgcca tatccaccgg aatggtcagt ttcgcatcca gagatttaac
     7021 cgaacgatct acttcctgcg ccagcgtttg cggcgcttct ttagtcgttg ccggatcttt
     7081 caggaacagc gacagattca gcgcactttc accctgactg tttttccagc ttagcggcgc
     7141 gacagtaatc accggatcgc ctttcaacat cagcggcagg gcgctaaaga aggcttccgt
     7201 cactttctcc tgataaagtt cgggattgtt ggcaatttct ggctgtgcca gcagcgcctg
     7261 agtttgcgcg ttatattgct ggctgaactg atgccaggct tcaccatcaa tctggccgac
     7321 ttttaaagtc agcttgccgc tgcccagatc ctgattctgt accttcaggc tgtttagcga
     7381 gtaatccagt tggctattga tcgttttacc gtcattgacc agatccgatt taccgctgat
     7441 ctccatgcct tccagcagtg ccagttcttt gccttccact gaaatggtca ttttttccag
     7501 tgacagtttt tggtttccta cgcgctcacc aaaacttgcc agcgtgctgg aaccgtcggt
     7561 tttcagatta ttaaaggtca actgcacttt ctggttgtat tcgttaactg cgtctatccg
     7621 accactttgc gcctccccgg aaagggagat ggctttgccg tctctgtcag catttaactg
     7681 gaactcgccg ccgctaaagg cgactttttc atccttttgc tcgtaattca gtggcttgag
     7741 cgaaatatcg gaactggaat caccgctgta accaatgcgc gagttaatct caaaaggcgt
     7801 ttcacctttt gccatatcaa acagtggttt gcttacttcg ttattaacca gcgtggtttg
     7861 aattgatgcc atcgacggga tcaggttcag ttttttaagc tgggcaagcg ggaagggacc
     7921 atgatcaacc gattcgttga agatgacgct ctgaccgctt ttaatccacg gattttcttt
     7981 cccggcaatg ggtttcacca acagttgcaa ctgactgctg aatacgccgc gatgatagtt
     8041 ttgataactc acttccaggt tggattcagg agctgtcagt tttagttgcg cgttcgcctg
     8101 cgcgaccatg tcttcgagat gggtttcaat cttcttgcct gtataccatg cgccgcctgt
     8161 ccagactacg cctagcgcaa caatgacgcc taccgctacc agcgatttat tcataatgat
     8221 tatccataaa atgaaatcag gcggactggc cgcctgaagg tgttataagc ctttaataag
     8281 cttagcaaga gatgttaatt ttttcagtaa gctcttacag cttgttgtaa acacgcgcta
     8341 aacggccgtg gcctttgaca gtcaccggtg attcgttggc ggcaataaac gctgattcac
     8401 ccggtttaag ctgtaactgc tgagaacctt tccacaacgt tgcatcgcct tcgacgcaga
     8461 acaaaatggc ggcactctgc tggctaatgg tggtttcttt atcactaagg tcatgcagcg
     8521 agaaggcaaa atcatccact ggaatcggga agtccagttc tgcaccttgt ttcaccggct
     8581 gggtcaacaa ctggttagcc ggtttggctt cgaatttcac attggcaacc agttccggaa
     8641 tatcaatgta cttaggcgtc agacccgcac gcagcacgtt atcggagttc gccatcactt
     8701 ccagcgccac gccttgcagg taagcgtgcg gtgtttcagc gaacaggaac atcgcttcgc
     8761 caggattcaa tttcaccaca ttcagtaaca gcggggagaa caggccgctg tcttccgggt
     8821 aaaattcaga aattaaacga atcgtttgcc acggttcacc ctgctgactg tcgagcgccg
     8881 attttaaaat cgccagcgcg cgggattttt cttcaccctg catattcaac aggctggcga
     8941 acagttcgct taaacgttcg gcattaggct gttgtaaaaa gtgagcaatt gccggatgtg
     9001 cacctgcgac tggctggagt agggagacaa tctcggaaaa ctcacgaaac gcgttcatcg
     9061 caaggaaagg cgtcagcgca aaaaccagct ccggcttgtg gttaggatct ttatagttac
     9121 gctcggcggc atccatcggg atacctgcgg cattttcttt ggcaaaaccg atttcagaat
     9181 tgcgtttgtt tggatgaacc tgaatggaga gcggctgtgc tgcgcataat actttgaaca
     9241 ggaaaggcag ttcgccaaag cgtttggcaa cggcctctcc gagcagagtc gatttatcac
     9301 tctcaatcac atcacgcagt gaaacgatat ctccggcggc attctgcact cgtgaactgc
     9361 ttttcggatg tgcgcccatc cacagctcgg ccatcggctg gctggacgga ttttccatac
     9421 cataaagttc agtcaacgcc gttttgctgc cccaggcata gttttgcact gagttaatga
     9481 gtttttgcat gatcaatccc tgttttaatg tggaaattaa tcccactatt aaagcaagaa
     9541 tcctacggga agtaacctgg agccgcaaaa agtcgtacta gtctcagttt ttgttaaaaa
     9601 agtgtgtagg atattgttac tcgcttttaa cagggcaacg gaacacccgc ccagagcata
     9661 accaaaccag gcagtaagtg agagaacaat gtcaaacaaa ccctttcatt atcaggctcc
     9721 ttttccactc aaaaaagatg atactgagta ttacctgcta accagcgaac acgttagcgt
     9781 atctgaattt gaagggcagg agattttgaa agtcgcaccc gaagcgttaa ctctgttggc
     9841 gcgtcaggcg tttcatgatg cgtcatttat gctgcgtccg gctcaccaac aacaggtggc
     9901 cgacattctg cgtgacccgg aagccagcga aaatgataaa tatgtggcgc tgcaattcct
     9961 gcgcaactcc gacatcgcgg cgaaaggtgt tctgccaacc tgtcaggata ccggcactgc
    10021 gattattgtt ggtaaaaaag ggcagcgtgt atggaccggt ggctgtgatg aagcggcgct
    10081 ggcgcgcggt gtctataaca cttatatcga agataatttg cgctactcgc aaaacgcgcc
    10141 gctggatatg tataaagagg tgaataccgg caccaatctg ccagcgcaga tcgatcttta
    10201 tgccgttgat ggcgacgagt acaaattcct ctgtatcgcc aaaggtggtg gttcggcaaa
    10261 caagacgtat ctctatcagg aaaccaaagc gttactaacg ccggggaaac tgaaaaatta
    10321 cctggttgag aagatgcgca cgctgggtac ggcggcctgt cctccgtatc atattgcgtt
    10381 cgtaattggt ggaacttctg cagaaactaa ccttaaaaca gtgaaactgg cttccgctaa
    10441 atactatgac gaactgccaa cggaagggaa tgagcacggt caggcattcc gcgatgtgga
    10501 actggaaaaa gaattgctga tcgaagcgca aaatctcggt ctgggtgcgc agtttggtgg
    10561 taaatacttc gctcacgaca tacgcgtgat tcgcctgcca cgtcacggcg catcctgtcc
    10621 ggttggtatg ggtgtttcct gctctgctga ccgtaatatc aaagcgaaga tcaaccgtca
    10681 ggggatctgg atcgaaaaac tggaacataa tccaggtaaa tatatccctg aagagctgcg
    10741 taaagcggga gaaggcgaag cggtgcgcgt tgaccttaac cgtccgatga aagagatcct
    10801 cgcacagttg tcgcagtatc ccgtttctac acgcttatcg cttaacggca cgattatcgt
    10861 cggtcgtgat attgctcacg ccaaactgaa agagcggatg gataacggtg aagggctgcc
    10921 gcagtacatt aaagatcatc cgatttacta cgcgggtccg gccaaaacgc cggaaggtta
    10981 tgcctccggt tctcttggcc caacgaccgc cggacggatg gattcttatg tcgatcaact
    11041 gcaagcgcag ggcggaagta tgatcatgct ggcgaaaggc aaccgcagcc agcaggtgac
    11101 ggatgcctgt aaaaaacacg gcggcttcta ccttggcagt atcggtggtc cggccgctgt
    11161 attggcgcag ggaagtatta agagcctgga atgtgttgaa tatccggaac tgggaatgga
    11221 agccatctgg aaaattgaag tggaagattt cccggcgttt atccttgtgg atgataaagg
    11281 aaatgacttc ttccagcaga tacaactcac acagtgcact cgctgtgtga aataaacaga
    11341 gccgcccttc ggggcggttt ttttacatgg cacgaaagac caaacacttg ttatcaaata
    11401 gtaaataata agtgagctaa aagttgctta gcgaaagcaa aacagaaaga aaaaattaaa
    11461 caggtgagga gcaggccatg aatacagtac gcagcgaaaa agattcgatg ggggcgattg
    11521 atgtcccggc agataagctg tggggcgcac aaactcaacg ctcgctggag catttccgca
    11581 tttcgacgga gaaaatgccc acctcactga ttcatgcgct ggcgctaacc aagcgcgcag
    11641 cggcaaaagt taatgaagat ttaggcttgt tgtctgaaga gaaagcgagc gccattcggc
    11701 aggcggcgga tgaagtactg gcaggacagc atgacgacga attcccgctg gctatctggc
    11761 agaccggctc cggcacgcaa agtaacatga acatgaacga agtgctggct aaccgggcca
    11821 gtgaattact cggcggcgtg cgcgggatgg aacgtaaagt tcaccctaac gacgacgtga
    11881 acaaaagcca aagttccaac gatgtctttc cgacggcgat gcacgttgcg gcgctgctgg
    11941 cgctgcgcaa gcaactcatt ccgcagctta aaaccctgac gcagacactg agtgaaaaat
    12001 cgcgtgcatt tgccgatatc gtcaaaatcg gtcgaaccca cttgcaggac gccacgccgc
    12061 taacactagg gcaggagatt tccggctggg tagcgatgct cgagcataat ctcaaacata
    12121 tcgaatacag cctgcctcac gtagcggaac tggctcttgg cggtacagcg gtgggtactg
    12181 gactaaatac ccatccggag tatgcgcgtc gcgtagcaga tgaactggca gtcattacct
    12241 gtgcaccgtt tgttaccgcg ccgaacaaat ttgaagcgct tgcgacctgt gatgccctgg
    12301 ttcaggcgca cggcgcgttg aaagggttgg ctgcgtcact gatgaaaatc gccaatgatg
    12361 tccgctggct ggcctctggc ccgcgctgcg gaattggtga aatctcaatc ccggaaaatg
    12421 agccgggcag ctcaatcatg ccggggaaag tgaacccaac ccagtgtgaa gcattaacca
    12481 tgctctgctg tcaggtaatg gggaacgacg tggcgatcaa catgggtggc gcttccggta
    12541 actttgaact gaacgtcttc cgtccgatgg tgatccataa tttcctgcaa tcggtgcgct
    12601 tgctggcaga tggcatggaa agttttaaca aacactgcgc agtgggtatt gaaccgaatc
    12661 gtgagcgaat caatcaatta ctcaatgaat cgctgatgct ggtgactgcg cttaacaccc
    12721 acattggtta tgacaaagcc gcggagatcg ccaaaaaagc gcataaagaa gggctgacct
    12781 taaaagctgc ggcccttgcg ctggggtatc ttagcgaagc cgagtttgac agctgggtac
    12841 ggccagaaca gatggtcggc agtatgaaag ccgggcgtta atctgcaaca tacaggtgca
    12901 gccgtggaat gatcaaacga agcggctgcg cctgaggttt ataacggtgc tgcacattgt
    12961 cggcatcgta atttaacaac tcaccaacgt ccggcacgcc cgcaccatta tcccgattaa
    13021 tcagtgcaat cagcggtgta gggcaggcgt gttgcacttg tttttgatct cctttgtacc
    13081 agacgcgggc aatcggctgc accttcaccg gacgtttgat ttttaacttc gcgttctgtg
    13141 gcagggcagc gatatcctga tactctcgct ccagttttct ttgccactcc tcgcgcgtcc
    13201 acggtgcgac actgcgtggt gatttcaggc ttttttccag ctgtgccagg acttcatcac
    13261 gatgcaaatt tttaatgata tgtttattag cccagccaaa acgtaaagtg gcggggtcgt
    13321 gcagaacggt gagcgagcgg taagcattaa gggtgatcag ccccggcaaa tgacgatgca
    13381 cccattcaaa acgtgccgcg gtggggagtt ctgactcaac cgtgacgata tgctcgaacg
    13441 tggtcttgag tttattgatg tgctgaatat gactgaccaa cgctgcttgc gaaaggttat
    13501 cgacctggta acacaacacg ccaggcagac ggacagcggc tttgctgctg cgattttcgg
    13561 actgttgttg aataaataaa tggcggaaat gacgcaacgc cagcgactgc gcgtcgttgc
    13621 cgagatgttg tttcacctca atacgattaa gcggattatg ctcatcctct ttttttacct
    13681 ccggcaaaga gaacacgcgg gcaaccaata gcttgtgttg ctcaagatga gcggcaaatg
    13741 cagccagctc ttgttccatc tggcgaaagg tagtgttgag tcggtctacg agatcgtaac
    13801 gcgccataat attaaccact ttagttacaa catccttaat ttatagcaca atggtggtga
    13861 cttgaccatc gtgcgcgtag tgtcaggcag aggtaaattg cgggatgtta tgccataacg
    13921 gccagctaaa cgagaagcga gcaccaccca gttcgctggt gtcacaatta accgtaccgc
    13981 ccattgccag tgctatagag tggacaattg ccagccccag cccgcagccg ccggttgagc
    14041 gatcccggct gggatcgagg cgaacaaaag gttcaaagat atgttcgcgg ttttctgggg
    14101 caatccctgg gccatcatcc tcaacaatta atgtcgctct attccccgac agtagcaggc
    14161 tggtttcaac cgttgaatgg cagtaccgca gggcgttatt gagcaaatta tccagcacgc
    14221 gctccattaa gcgcatatcc aacgccgcat aatggccttg cacgagcgtt tttatccgta
    14281 ccgttttatc gggcgttact gcctgaatat ctgccagatg cgttgacagc cacaacggca
    14341 ggtctggttc gctaagatga agctcgtttt gtgggcgatc gagtcgggca taagtcagca
    14401 gctcttcaat taaagcttca agttgactga tatcacgatt caacgcctgg gactcggcgg
    14461 cgctcaggtt atcgctcatc tccagtcgat aacgcaggcg cactaacggt gttcgcagtt
    14521 cgtgagcgat accgtcaata agctgttttt tgctggcaat caaggcgttg atattgtccg
    14581 ccatctggtt aaatgcgata ccaagtcgtt caaagctcga accctcatca aagtggatac
    14641 gctcatagag atgcccatcg ccaaatcgtt gcgccgctgc ttccagtttt aacatatcct
    14701 gccagtgcgg acgcatccag ataaacaccg gaaaggcgag ggaaatagca ataaaagcga
    14761 tcagggcgat atccagcaat cgcatctgat ggagataata aagataagga acaggaccaa
    14821 ctgccagcac gtagtggctg cgcgggatac gctgcaaaaa cgtgtactga tcgtccaggg
    14881 cgacaatttc gccgccacgc agtcggtgca tggaaatatc atcaagatgg tatttactca
    14941 gtggctcgac acgcagatcg aaagagagat ttaaatccat ctctttcagc gtcttacccc
    15001 agtcgtgtgg ggggatctca cgcaattcgc tgcgcatcag atacagcgaa ctgttcatca
    15061 aatcatccag cgactgtttg cccgcgcgtt cggcggtaaa tttgtacacc aacccaacca
    15121 gcagagacat cacaaggaag cagacaaaca ataacaggta aaactggata aacagttttt
    15181 tcatcgctta ttcccatgca tgaggcgcaa aaagatagcc tttgttacgc acagttttaa
    15241 tgcgataagg ttctgcggcg ttatcgagca gtttttttct taaccgcgaa atagccacgt
    15301 ccacgttacg atccagtccg tcataactga cgccgcgtaa atttttcagc aatgcatcgc
    15361 ggtccatgat ttgcccggca tgggtagcta attcccacaa taattcgaaa tcagctgtcg
    15421 agagcgagat ttcagtgtta gccagggtga ctacgcggtt gatgggatcg atggtcaacg
    15481 tgccgaaatg cagggctttg tagggagtca gagacgtttc ctgaagacct ttggtcagtg
    15541 tggcttgctc attctgacgc aaatgcaaac gtaaacgcgc tagcaaaaca gcagggggca
    15601 tcgttttgag aatatagtcg caggcaccca tttccagtgc caggatgtgg ttcatatcgc
    15661 tatcgagaga ggttagaaga acaatcggtc cagaccactt tgcgcgtaaa tcacgacaaa
    15721 tggtaatgcc gtccttgcct ggtagcatga tgtcgagtaa caccaaatcc ggattttctc
    15781 gcaaaatggt ttcttcggcc tggtcgccgc gcggctctac ggtaacctgc atatcatgtt
    15841 ttgccaggta cgcggcaatc agtgaaccga cttccgcatc atcttccaca aatacgatag
    15901 tgttcataac attcacggta gatataaaaa cgtcacaata caccgcgctg tttttactta
    15961 ctatcaatcg tttctaaaca agttttcatc aggtattcta ctgatgactt gttatggaag
    16021 tgttaaggta aaatcaaagc cgcgctcggt gtgctggtag tgctgttgat tggtgtttta
    16081 gcaaaaacga aaaattatta tatcgccggg ctgattccac ttttcccgac ctttgcgctt
    16141 atcgcgcatt atattgttgc cagcgaacgc ggcattgaag ccttacgcgc aaccatcatt
    16201 tttagtatgt ggtcgattat tccctatttt gtttacctgg tgtcgctgtg gtatttcacc
    16261 ggaatgatgc gcttgcccgc cgcttttgtt ggttctgttg cgtgttgggg gataagcgca
    16321 tgggtgttga ttatatgctg gataaagctg cattaacgca gatgacgacc gccatcaagt
    16381 gggaaactgc gtccggtgac aaagcaactg gtaagtaagt aatcgaccag gtcgatcact
    16441 tctttctcgc caggcgcggt tttcatcagt gatttattca gcgcctgttg tcgatattcg
    16501 gcatcatcat gttcattaaa caggatcagc gatggagcaa tagaattcac tttcacttcc
    16561 ggtgccagct tgcgggcaaa cgagcgggtc atattatcca gtgccgcttt gcttgcagca
    16621 tacgcaatat gcttgtcgct accgcgctcc accacataat cggtaaagtg aatgatatcg
    16681 ctggcggcgt gtccgtgccc acgcagtaat ctttccagcg catggttgag caggtatggg
    16741 gtattaacgt ggatctgcat catgcaagcc agtacgtcgg ccagtggcgc acccagtttt
    16801 tccgccatcc acgcactggc gttatgcaaa atagcacgca gaccatgggt gctttttagt
    16861 acttcatcgg caaacgccat cacaccgtcg ttggtcgaaa aatcagcctg aatacactgc
    16921 gcacctgcct taatcagtcc atcaatggct ggatagtgcg tccgatagct gacaatcacc
    16981 ggttgctttt gattaatgaa atgccaggcg agggcgaggc cgatgcgacg acctccgcca
    17041 gtaattaata ttggcaaggg ctgggcttta cccatcgtta tctcctttgc tatccaacga
    17101 tgggatgaac gttatcccac cagcatccag gtcgccggaa ctgaggcaat taacagcatg
    17161 ccaatcagca ccatttcctg acggttcagt acattatcat gtgtatgcgt tttgcgcgca
    17221 tacaggaaaa ccagcagccc cggcgcatac agaacaacgg ataacagcaa gtgcattgga
    17281 ccagaggcgt acaataacca taagccataa atgcaggcac cgacacctac cgctttatgc
    17341 agtggacggg ttgcgatttt cagcaagaac gcgccgacca ggaaataggg caccagaatc
    17401 atttctgagg cgatggtcag caacgtgttg taatcggaac cggtcagcca gatgagtacc
    17461 agacaaattt gcacgcagat gttggtcaac cacagtgagg cggatggcgc agcttgtgcg
    17521 ttctggcgcg caaaaatgcg tgggaatgct ttatgagtgg cagccaggaa cggaacttct
    17581 gccgccatga tggtccagct taagtacgcg ccgcaaacgg aaacgatcaa actggcagcg
    17641 atgatgattt cgccccatgg tcccatcatt tccaccatca gaccggccat tgacgggtta
    17701 cgaatttcag ccagttcagg acgtgccacc acacccagcg aaagcagcgt taccagcaag
    17761 taaacgccca gagcggagag aaccgccagc agtgtcgctt tgccaacatc acgtttatta
    17821 cgcgcacgcg cagaaacaac cacggcacct tccacaccaa tgaaaaccca cagggtgatc
    17881 agcatggtgt ttttcacctg ttcccaaacg ggtacgccaa gtacaagtcc ggtgaagtcg
    17941 agcttgaagg tatccagttt gaacatcatc atcgccagca caacaaacag acccagcggc
    18001 aacaattttg ccagtgtcgc caccaggtta atgctggcag cggtttgcac cccgcgcagg
    18061 atcaaaaagt gaacaatcca caataaagcc gatgcaccga cgatcgattg ccaggtatta
    18121 ccatcgccga acaggcgcaa ttccggcgtg tccgtaaaaa agcttaacgc ggaaaaaacg
    18181 atcaccagat aggagacgtt ggcgatgact gcgcacagcc agtatcccca tgcggaacaa
    18241 aagccgatta gctcgccaaa cccttcgcgg gcataggtaa agataccgcc gtcaagttcg
    18301 ggacgaatgc gcgtgaggat cagcatggca aaggccagca ataaaatgcc agcgccagta
    18361 ataccccagc cgatgagcag tgctgccggg ctggcaactg ccgccatatt ttgcggcaga
    18421 ctgaaaacac ccgcgcccag cattgagctt aataccagcg cggtgagtgc gctcagtccc
    18481 agtttctttt ccatcgatat ccagtgatta aaacgtgata agaagaataa atattagggc
    18541 aaaacgcata aaaatggagt ttgccactga agcgcgggat tttacgaaga gatgtgtctg
    18601 catgcaatgg tcgcggggaa atttgtgact aaaaatgcga aaggcggcat caagccgcct
    18661 tataggagta actgaatagt tatttataca gatctgcgct gacggtcagg ttattaccac
    18721 gttcctgcca ctggcgggtg atgtggtaat acttagcacc tttcttcgcg gcacgtttcg
    18781 caacctgata ggagacttcg gtcatgttgc cgtagttgcc agagaatttg atgctatcga
    18841 acgggaccat catcgctgcg gtcgctttgt tcagttcttc gactttagtg ccatccggga
    18901 gcgtgacggt gtaacgcccg ccttttgatg actgggtttc aaagaaacga ccgacttcag
    18961 aacttggtga tgcggtagtc gcaacacctg ggatctcaac tttcttcgcg gcttcgccac
    19021 cggcagccag agctgcacgt cctgcttcgg aatctgccgg gatcacatcc gggctctgga
    19081 cgatacgttt cttagcatct tttttataga tgaatgcagt aatacgctgg ttgccgccct
    19141 ggttggcatc gatttgacga acgatgtaga aagagtaggc acctttcgct tttgccgctt
    19201 tggtgatggc atcattgact tctggctggc tacgatagaa gccctggacg gtgaccgtgt
    19261 caaacggttc aatcagaaca gcctgatctt tcggcagttc gacaacaccg ttaattacgc
    19321 gattacttgt ttcttctgct ttttcagcat cggctttata gaggtcagcg accacacgcc
    19381 agttaccgct gttaccaaaa tcagaagtgt cgacaacata aaaagaggcg gcaccttctt
    19441 tatctgcgcg acgagaaacg gctttcaccg cttcgccaat agcattaaaa cgaccggtaa
    19501 ccactacacg gtcaaaaggt ttaaccgctg ccgcttgctc cggtgtcagt tctgttgctg
    19561 cgttaacgga gaatgccgta gcagaaagca gtgccgacgc caggagggtg ttcttaagct
    19621 tcataaaata atccttcgcc ttgcgcaaac caggtactgg tattgttatt aacgagaaac
    19681 gtggctgatt attgcattta aacggtgtaa ctgtctgcgt catttttcat atcacattcc
    19741 ttaagccaat tttaatcctg ctcaaatgac cgtctatgct taaaaaacag ccgtatcagc
    19801 atcattacta ctgaagcaac tgaattgtat aagttaattt aatgttaagt agtgaatcgt
    19861 gccggggcga tgtctcgttt tacccgaccg tcgaagacaa ttatcagtct ttatccggcg
    19921 ttctaaggtg tttatcccac tatcacggct gaatcgttaa tattttgcga gttcacgccg
    19981 aaatactgat ttttggcgct agatcacagg tataattttc agtacgttat agggcgtttg
    20041 ttactaattt attttaacgg agtaacattt agctcgtaca tgagcggctt gtgtggctcc
    20101 tgacacaggc aaaccatcat caataaaacc gatggaaggg aatatcatgc gaattggcat
    20161 accaagagaa cggttaacca atgaaacccg tgttgcagca acgccaaaaa cagtggaaca
    20221 gctgctgaaa ctgggtttta ccgtcgcggt agagagcggc gcgggtcaac tggcaagttt
    20281 tgacgataaa gcgtttgtgc aagcgggcgc tgaaattgta gaagggaata gcgtctggca
    20341 gtcagagatc attctgaagg tcaatgcgcc gttagatgat gaaattgcgt tactgaatcc
    20401 tgggacaacg ctggtgagtt ttatctggcc tgcgcagaat ccggaattaa tgcaaaaact
    20461 tgcggaacgt aacgtgaccg tgatggcgat ggattctgtg ccgcgtatct cacgcgcaca
    20521 atcgctggac gcactaagct cgatggcgaa catcgccggt tatcgcgcca ttgttgaagc
    20581 ggcacatgaa tttgggcgct tctttaccgg gcaaattact gcggccggga aagtgccacc
    20641 ggcaaaagtg atggtgattg gtgcgggtgt tgcaggtctg gccgccattg gcgcagcaaa
    20701 cagtctcggc gcgattgtgc gtgcattcga cacccgtccg gaagtgaaag aacaagttca
    20761 aagtatgggc gcggaattcc tcgagctgga ttttaaagag gaagcgggca gcggcgatgg
    20821 ctatgccaaa gtgatgtcgg acgcgttcat taaagcagaa atggaactct ttgccgccca
    20881 ggcaaaagag gtcgatatca ttgtcaccac cgcgcttatt ccaggcaaac cagcgccgaa
    20941 gctaattacc cgtgaaatgg ttgactccat gaagacgggc agtgtgattg tcgacctggc
    21001 agcccaaaac ggtggcaact gtgaatacac cgtgccgggt gaaatcttca ctacggaaaa
    21061 tggtgtcaaa gtgattggtt ataccgatct tccgggccgt ctgccgacgc aatcctcgca
    21121 gctttacggt actaacctcg ttaatctgct gaaactgttg tgcaaagaga aagacggcaa
    21181 tatcactgtt gattttgatg atgtggtgat tcgccgcgtg accgtgatcc gtgcgggcga
    21241 aattacctgg ccggcaccgc cgattcaggt atcagctcag ccgcaggcgg cacaaaaagc
    21301 ggcaccggaa gtgaaaactg aggaaaaatg tgcctgctca ccgtggcgta aatacgcgtt
    21361 gatggcgctg gcaatcatcc ttttcggttg gctggcaagc gttgcgccga aagagtttct
    21421 tgggcacttc accgttttcg cgctggcctg cgttgtcggt tattacgtgg tgtggaatgt
    21481 atcgcacgcg ctgcatacac cgttgatgtc ggtcaccaac gcgatttcag ggattattgt
    21541 tgtcggagca ctgttgcaga ttggccaggg cggctgggtt agcttcctta gttttatcgc
    21601 ggtgcttata gccagcatta atattttcgg tggcttcacc gtgactcagc gcatgctgaa
    21661 aatgttccgc aaaaattaag gggtaacata tgtctggagg attagttaca gctgcataca
    21721 ttgttgccgc gatcctgttt atcttcagtc tggccggtct ttcgaaacat gaaacgtctc
    21781 gccagggtaa caacttcggt atcgcaggga tggcgattgc gttaatcgca accatttttg
    21841 gaccggatac gggtaatgtt ggctggatct tgctggcgat ggtcattggt ggggcaattg
    21901 gtatccgtct ggcgaagaaa gttgaaatga ccgaaatgcc agaactggtg gcgatcctgc
    21961 acagcttcgt gggtctggcg gcagtgctgg ttggctttaa cagctatctg catcatgacg
    22021 cgggaatggc accgattctg gtcaatattc acctgacgga agtgttcctc ggtatcttca
    22081 tcggggcggt aacgttcacg ggttcggtgg tggcgttcgg caaactgtgt ggcaagattt
    22141 cgtctaaacc gttgatgctg ccaaaccgtc acaaaatgaa cctggcggct ctggtcgttt
    22201 ccttcctgct gctgattgta tttgttcgca cggacagcgt cggcctgcaa gtgctggcat
    22261 tgctaataat gaccgccatt gcgctggtat tcggctggca tttagtcgcc tccatcggtg
    22321 gtgcagatat gccagtggtg gtgtcgatgc tgaactcgta ctccggctgg gcggctgcgg
    22381 ctgcgggctt tatgctcagc aacgacctgc tgattgtgac cggtgcgctg gtcggttctt
    22441 cgggggctat cctttcttac attatgtgta aggcgatgaa ccgttccttt atcagcgtta
    22501 ttgcgggtgg tttcggcacc gacggctctt ctactggcga tgatcaggaa gtgggcgagc
    22561 accgcgaaat caccgcagaa gagacagcgg aactgctgaa aaactcccat tcagtgatca
    22621 ttactccggg gtacggcatg gcagtcgcgc aggcgcaata tcctgtcgct gaaattaccg
    22681 agaaactgcg cgctcgtggt atcaacgtgc gtttcggtat ccacccggtt gcggggcgtt
    22741 tgcctggaca tatgaacgta ttgctggctg aagcaaaagt accgtatgac atcgtgctgg
    22801 aaatggacga gatcaacgat gactttgctg ataccgatac cgtactggtg attggtgcta
    22861 acgatacggt taacccggcg gcgcaggatg atccgaagag tcctattgct ggtatgcctg
    22921 tgctggaagt gtggaaagcg caggacgtga ttgtctttaa acgttcgatg aacactggct
    22981 atgctggtgt gcaaaacccg ctgttcttca aggaaaacac ccacatgctg tttggtgacg
    23041 ccaaagccag cgtggatgca atcctgaaag ctctgtaacc ctgacggcct ctgcggaggc
    23101 cgtcactctt tattgagatc gcttaacaga acggcgatgc tttgacctcc cgctgtttgt
    23161 tcaagcgcaa ttttgacaat aattgttaac ggcacggaaa gcagcatacc caccggtcct
    23221 aacaaccatc cccaaaaaat caacgacaaa aataccacca atgtggaaag ccccagccca
    23281 cgtcccatga tgcgcggctc cagaatattg ccgaagacca gattaatcag cagatatccc
    23341 gccagcacca gcaacgcttc gtagaagcca ttaaacacca gtacctgagc gatagggggg
    23401 attgccgcga gaactgaacc aatattaggg atgtaattaa gcgcaaaggc cagcaatccc
    23461 cagacaaaag cgaagcgaac atcgagtgcg gcgagcatcg cccaggcgac caggccggtg
    23521 atgatgctga tggctgtttt cagcaccaga taatgagaaa cactgtcaat tgcacgttga
    23581 atcgccgcca tcccttcaac cggacgcgcc atcatttgct gaaattttcc gggcaattgt
    23641 ggcacttcga gcagcataaa cagcaccgtc agcagcaata aaaatattga taacatggca
    23701 ttagataact gcgtcaataa gttggtgagc aacgtcatcg ctgcgttcgg atcaatgtaa
    23761 tgcgccagct ggtcaactga gacgtcaatc cctacgcgtt gcaacaacgg ctcaagagct
    23821 tgcagcggcg tcataataga gttgcgatat tgcggtaacg tccgcgtcaa ctcgttgagc
    23881 gcggaaccca gataagctaa tagcaacacc atcgccatca cgatgatggt catcaaaatc
    23941 gacaccgcca gtacacgcgg cactcgccag cggaccatgt gttgcaccag cgggttaaga
    24001 ataacagcat tttatcattt agtgtttttt gctgttttat aatgtttcag gctgtgcatt
    24061 atgtttttga ttatcaacag atttgtgatt ctccttgttc cagcttgttt cacgttgtag
    24121 ccctttgtgc aacgatcggt gtagtcactg gtgtagtcac tttttcgtaa agagggggta
    24181 aaacgtgagc agagcaatga acaaactgag cgataccttg ctaaggaaac ttcatggtaa
    24241 gccagcggag aaaaacacgt tttatagtga tggcggaaac ctgagcgtga aatatttaac
    24301 atcagggaaa ttgacctggt atttcatata cagggccgga acgggaaggg agacacgacc
    24361 cgaacgcatt aagctgggaa gttatcctga tctgagcctg aaatcagcca gggaaaaagc
    24421 cgcccagtgt cgcgcatggc tggcagaggg gaaaaatcca cgtcatgagc ttaattacac
    24481 cgtacaggaa gcgttaaagc cggtaacggt tggcgatgcg ctcacctact ggcttgagta
    24541 ttacgtaaag gaaaaccgcg tggattatat cgccctgaaa aggcgactta ataatcacgt
    24601 aatacagcag attggtgcta tgccgctgga taaatgcgag ctacggcact ggctggcctg
    24661 ttttgaccag gtggcaaagc gaacgcctgt tactgccgga ttcgtgctac aggcgtgcaa
    24721 acaggcgctt aagttctgcc gtaggcggcg ctatgcaatc agcaacgttc tggacgatct
    24781 gaacgtggcg gacgttggga aaaaaccgga tataagcgaa cgtgtcttaa gtaacaaaga
    24841 acttggcgaa ttattgcagg cactggacaa aaaaatattc tccccttact acgtcgcgtt
    24901 aatccgcctc ctgattgtct tcggagccag aacggtagaa ctgaggttat cggagatcgg
    24961 ggagtgggat tttacggaaa tgctatggac cgttccgaag gagcacagca aaacgaaggt
    25021 cgcaatattc cggcccatac cggaagcgat cctgccgttc gtcacgcagc tggtggagca
    25081 gaacaggcac acgggcttat tgctggggga agtgaaacag gaggccagcg tatcgcagta
    25141 tggaagatta gcgcacagga ggcttaatca tcctcactgg tcactgcatg acatccggcg
    25201 cacctttaca accatgctga acgatttagg cgttgatccg catgtcgtgg agcagcttac
    25261 aggccaccag atgccaggaa tgcagcgagt ttataatcat tcccgttatc tggatgctaa
    25321 acgcaatgcg ctggatatgt ggacggagcg gttagggata ctggcgggaa cacatgaaaa
    25381 cgtaaccacg ctaccagtag ccagaagaaa ataatttttt tcgtgttttt tcagtatgcg
    25441 catactgtat atgcgaacag atacaacgtg caacaatgag caacaatgtg gaacaaccac
    25501 gaacaagagg cgaaaaagca tacagattta taagtggctg atttttaatg tgtcactggt
    25561 tttttataca ctagcgaatc actctttaaa gagcgagaaa aaaggcatga aacaatattt
    25621 tatgcctttg tattaacatg aatttaaaag attttattct tactgtttca ttttctgtaa
    25681 atcatacatc ctcaatattt gccattcatc actctagcgg gaacaatacg acacaataag
    25741 acacctgatg actctttaag aaacgaaagg gggggcaata gtgttaagca ctgatcggtt
    25801 tatacgtgaa aaagaatgcg aaaaactaac cggccttagc cgtacgtgtc gctaccgcct
    25861 ggaaaaggcc ggacaattcc catcacgtcg taaacttggc ggtcgttccg ttggctggtc
    25921 tttatccgag gttctggcct ggaaggatag ctgcaaggca gttcattaat cacgctggcg
    25981 gcacgcagcc gccacacatc aatcatctga acacagagct ataaccatga agattgaata
    26041 tacgccagaa cgtgggcggg gattcgttcg ccctggtgaa actgaaaaac aacaaaattg
    26101 gggtttttca ggtataaaaa aagcggcccc gaaatggagc cgcctttctg aacagataac
    26161 ccgctgcgcc gtttgtgtgt gtgatcccaa acataagcac ggggatgata gccgctatca
    26221 ggctggtggg caatgcaatc agtctggttc agttcgttgc catacctgca atgagcgctt
    26281 ttccctgtac tctttaagga attgctcaag ggcaaaagca catggcgcga atctttctga
    26341 ttcatgctct atctttctgc gccgtctttt ccgtgccggt gataatgttt tggtcaattc
    26401 tttatcggtc attgtgttgt cctgcatagc aatgcgccgt aataccttac accacggcgc
    26461 tgatggtgat tactctggtt ctttggcctt gcgccgctgg cgatattcaa cttctcgttt
    26521 taatgccgca gtaacaaatt gccccgtact ttcgccaggc atttttaccg cctcaacatt
    26581 gttcataact tcatgcggaa cccttgccgc aacggtttgt gattttgcgt ttactgcttt
    26641 tgtcgccatg tggtgtaccc ctcataaaaa acaaatgcag tatgcaggaa aaaaaataag
    26701 tgttcaacac ttgacgtgtt taacacctgg gtttaaattg gtgttcaaca ccttgttggc
    26761 gcaaggtgca gaaacgacga aacccggcag tgcgctaaca ctaaccgggc ttctaaccac
    26821 caacgatagc gaaagtatcg aggtagctat gagaaatcat accatacacc cgcaagggcg
    26881 ggactcgcac aacctgaata aatacatctg gcgttttatc gccctgagca cggcacaacc
    26941 gcgcgtgatt accattgagg ccaccagcga acaggaagca cgccagcaat ctccggctgg
    27001 ctgcgtgatg gtatttgctg cccgtattcg tcagggggta ggcttatgag ccaggaaatc
    27061 acactacaac aggcagcaga acgcgcccac caaatcgaag ttatttgcgc actggcagag
    27121 gattaccctg gcatgatgac cgacagcgaa tcaggggcaa tcatcggctt acttaaacgc
    27181 cttagcggtg aggtctgcgt attcctgagc gatgaacagg aaagaagaac gcttatttct
    27241 aacgaaaaaa aatgcggagg ggtacatgtg caataaaacc acaccggacg cagccgccgc
    27301 cgcgctcact acgctgatgc acgcgcttat tgatatttct gttattgctg acagggcgca
    27361 taaacacgca gccagagaat cagaatgcat cttccattat ttaacatttg tgcagctaaa
    27421 agccgatcag gcactggata aggccggaaa aattatcatg gctgatgtgc aggaggtgca
    27481 ccatgcataa cctgtcaatt tctgacctta acagcattca gtttgacgag aaatttaccg
    27541 ggcagttgct ggtcaatgtg gagaacgggc gcatagtgcg taattatcac ctgccggatg
    27601 gtgcaattgc cggaagcgtt gaagcattgc tggaactggc ggaacgtgcg cgactgatta
    27661 agccgtcaac gagccatcac gatgatgatc tgcattttac cggatgtatg gtgagtcact
    27721 acgaaaacgg cgtcgaggta tcctgcgaac ggctgcgtga tgattgctgt ttcggcacac
    27781 tgccggaatt tatcgagttg ttgaccagtt gcggttatca ggtcattcag ggggtaaaca
    27841 tgcgtgatga tcgttttaat tccctgaaac aggaattttc cggcgttcct gatgatgcgg
    27901 ctgatgcgct ttcgtcaatg ccagagctta ttagagcggc ttttttctta ctttccacga
    27961 gagaatataa atcaacgggg cttgatgtac tgaatatcgt cgccgattat gctgatttcg
    28021 tgacagaggt tattttaaga aaaacgacgg acggggatta atatgcgtga tatttacctt
    28081 gaaacaatag accgcgcatt tcttgcactt tctcacagtg aaaacatgct ggaaatatta
    28141 cgcatatggc ttgaaacact tggcgacaat gaacgcgaca aacaaaaatc aagaattgcc
    28201 acggcattaa taacgcttct tgagcctgta ataatggaac tgcaagaaat agatctattg
    28261 cacgacagat ataaagaaca gcacaccgga gaataaaaat aatgaaactt aaatattctg
    28321 gcttaactgc cagtggcaac actcacccta aatttacgcg cggcgatatt taccgcgacc
    28381 agtacggcgg caccgtaacg attaaaggtg tagaagagcg acgcattacc taccgccgtg
    28441 aaggctacga atatgactgc gtgatgcctg tttatcagtt ccggcgtgat ttttctctgg
    28501 tacaggcagc gccccgcagt aaaccaacca gcagggagaa agcacgcgcc aatattcagg
    28561 aaataaaaaa gatgcttaac gtattcaggg gcaagaaatg aaaagcgcac cgaacttaaa
    28621 aaaacagcct tacgacaaga tgaccgaagt catcattttt gcgggtagtg atgcgtgggc
    28681 acatgc
//
LOCUS       DADMJB010000034        28224 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.034, whole genome shotgun sequence.
ACCESSION   DADMJB010000034 DADMJB010000000
VERSION     DADMJB010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 28224)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28224)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28224
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.034"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..856)
                     /locus_tag="JN078_001361"
     CDS             complement(<1..856)
                     /locus_tag="JN078_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000239477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic di-GMP phosphodiesterase"
                     /protein_id="HAY9040617.1"
                     /translation="MVKKPQQGTIFAAAQRSDSYFVKCINMLSLYEKIKIRLIILFLL
                     AALSFIGLFFIINYQLVSERAVKRADSRFELIQKNVGYFFKDIERSALTLKDSLYLLK
                     NTEEIQRAVILKMEMMPFLDSVGLVLDDNKYYLFSRRANDKIVVYHQEQVNGPLVDES
                     GRVIFADFNPSKRPWSVASDDSNNSWNPAYNCFDRPGKKCISFTLRINGKDHDLLAVD
                     KIHVDLNWRYLNEYLDQISANDEVLFLKQGHEIIAKNQLAREKLIIYNSEGNYNIIDS
                     VDTEYIAKT"
     gene            complement(956..1867)
                     /gene="gsiD"
                     /locus_tag="JN078_001362"
     CDS             complement(956..1867)
                     /gene="gsiD"
                     /locus_tag="JN078_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001236035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter permease GsiD"
                     /protein_id="HAY9040618.1"
                     /translation="MRLFNWRRQAVLNAMPLVKPDQVRTPWHEFWRRFRRQHMAMTAA
                     LFVILLIVVAIFARWIAPYDAENYFDYDNLNNGPSLQHWFGVDSLGRDIFSRVLVGAQ
                     ISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMRICDVLFAFPGILLAIAVVAVL
                     GSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDMTILLRHILPGT
                     VSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHVAVFPA
                     LAIFLTVLAFNLLGDGLRDALDPKIKG"
     gene            complement(1870..2790)
                     /gene="gsiC"
                     /locus_tag="JN078_001363"
     CDS             complement(1870..2790)
                     /gene="gsiC"
                     /locus_tag="JN078_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter permease GsiC"
                     /protein_id="HAY9040619.1"
                     /translation="MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEAD
                     AQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLT
                     ITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELG
                     WLPTVGADSWQHYILSSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWV
                     VLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQA
                     EILLFSLEFILINLVVDVLYAAINPAIRYK"
     gene            complement(2808..4346)
                     /gene="gsiB"
                     /locus_tag="JN078_001364"
     CDS             complement(2808..4346)
                     /gene="gsiB"
                     /locus_tag="JN078_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter substrate-binding
                     protein GsiB"
                     /protein_id="HAY9040620.1"
                     /translation="MARAVHRSGLVALGIATALMASCAFAAKDVVVAVGSNFTTLDPY
                     DANDTLSQAVAKSFYQGLFGLDKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGT
                     DFNAAAVKANLDRASDPANHLKRYNLYKNIAKTEAIDPTTVKITLKQPFSAFINILVH
                     PATAMISPAALEKYGKEIGFHPVGTGPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSI
                     TWRPVADNNTRAAMLQTGEAQFAFPIPYEQAALLEKNKNIELMASPSIMQRYISMNVT
                     QKPFDNPKVREALNYAINRPALVKVAFAGYATPATGVVPPSIAYAQSYKPWPYDPVKA
                     RELLKEAGYPNGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEV
                     EGKGQKESGVRMFYTGWSASTGEADWALSPLFASQNWPPTLFNTAFYSNKQVDDFLAQ
                     ALKTNDPAEKTRLYKAAQDIIWQESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFSFED
                     ADLQ"
     gene            complement(4366..6237)
                     /gene="gsiA"
                     /locus_tag="JN078_001365"
     CDS             complement(4366..6237)
                     /gene="gsiA"
                     /locus_tag="JN078_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415350.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter ATP-binding protein
                     GsiA"
                     /protein_id="HAY9040621.1"
                     /translation="MPHSDELDAGNVLAVENLNIAFMQDQQKIAAVRNLSFSLQRGET
                     LAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLQRRSREVIELSEQSAAQMRHVR
                     GADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQNASREEAMVEAKRMLDQVRIPEAQT
                     ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM
                     SMGVIFITHDMGVVAEIADRVLVMYQGEAVETGTVEQIFHAPQHPYTRALLAAVPQLG
                     AMKGLDYPRRFPLISLEHPAKQEPPIEQKTVVDGEPVLRVRNLVTRFPLRSGLLNRVT
                     REVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS
                     PGKLQALRRDIQFIFQDPYASLDPRQTIGDSIIEPLCVHGLLPGKDAAARVAWLLERV
                     GLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD
                     LQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLLAA
                     VPVAEPSRQRPQRVLLSDDLPSNIHLRGEEVAAVSLQCVGPGHYVAQPQSEYAFMRR"
     gene            complement(6224..7189)
                     /gene="iaaA"
                     /locus_tag="JN078_001366"
     CDS             complement(6224..7189)
                     /gene="iaaA"
                     /locus_tag="JN078_001366"
                     /EC_number="3.4.19.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-aspartyl-peptidase"
                     /protein_id="HAY9040622.1"
                     /translation="MGKAVIAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLE
                     AGESALDVVTEAVRLLEECPLFNAGIGAVFTRDETHELDACVMDGNTLKAGAVAGVSH
                     LRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSPAIFSTPLRYEQLLAARKEG
                     ATVLDHSGAPLDEKQKMGTVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGC
                     YANNASVAVSCTGTGEVFIRALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGG
                     LIAIGHEGNVALPFNTEGMYRAWGYAGDTPTTGIYREKGDTVATQ"
     gene            7393..8628
                     /gene="moeA"
                     /locus_tag="JN078_001367"
     CDS             7393..8628
                     /gene="moeA"
                     /locus_tag="JN078_001367"
                     /EC_number="2.10.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HAY9040623.1"
                     /translation="MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDV
                     VSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGA
                     PVPEGCEAVVMQEQTEQTDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAE
                     LPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGC
                     EVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKL
                     AIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVR
                     TASRLKKTPGRLDFQRGVLQRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGN
                     VDVGEWVEVEPFNALFGGL"
     gene            8628..9377
                     /gene="moeB"
                     /locus_tag="JN078_001368"
     CDS             8628..9377
                     /gene="moeB"
                     /locus_tag="JN078_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HAY9040624.1"
                     /translation="MAELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGC
                     AASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHNDATVGQPKVESARDALTRINPHIA
                     ITPVNALLDDAELAALIAEYDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQ
                     ITVFTYQDGEPCYRCLSRLFGENALTCVEAGVMAPLIGVIGSLQAMEAIKLLAGYGKP
                     ASGKIVMYDAMTCQFREMKLMRNPGCEVCGQ"
     gene            complement(9453..10115)
                     /gene="fsa"
                     /locus_tag="JN078_001369"
     CDS             complement(9453..10115)
                     /gene="fsa"
                     /locus_tag="JN078_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HAY9040625.1"
                     /translation="MELYLDTSDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLDVVLP
                     QLHEAMGGQGRLFAQVMATTAEGMVNDARKLRSIIADIVVKVPVTAEGLAAIKMLKAE
                     GIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLHQLLKMHAPQA
                     KVLAASFKNPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDWLGAFGRT
                     SI"
     gene            10246..11145
                     /locus_tag="JN078_001370"
     CDS             10246..11145
                     /locus_tag="JN078_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415345.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl-radical enzyme activating protein"
                     /protein_id="HAY9040626.1"
                     /translation="MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARTQDL
                     LYDARLCLEGCELCAKAAPEVIERALNGLLIHREKLTPEHLTALTDCCPTQALTVCGE
                     VKSVEEIMATVLRDKPFYDRSGGGLTLSGGEPFMQPEIATALLQACHEAGIHTAVETC
                     LHVPWKYITPSLPYIDLFLADLKHIADAPFKQWTDGNAAKVLDNLKKLAAAGKKIIIR
                     VPLIQGFNADETSVKAITDFAADELHVGEIHFLPYHTLGINKYHLLNLPYDAPEKPLD
                     APDLLDFAQQYACQKGLTATLRG"
     gene            11151..13583
                     /locus_tag="JN078_001371"
     CDS             11151..13583
                     /locus_tag="JN078_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl radical protein"
                     /protein_id="HAY9040627.1"
                     /translation="MTTLKLDTLSDRIKAHKNALVHIVKPPVCTERAQHYTEMYQQHL
                     DKPIPVRRALALAHHLANRTIWIKHDELIIGNQASEVRAAPIFPEYTVSWIEKEIDDL
                     ADRPGAGFAVSEENKRVLHEVCPWWRGQTVQDRCYGMFTDEQKGLLATGIIKAEGNMT
                     SGDAHLAVNFPLLLEKGLDGLREKVAERRSRINLTVLEDLHGEQFLKAIDIVLVAVSE
                     HIERFAALAREMAATETRESRRDELLAIAENCDLIAHQPPQTFWQALQLCYFIQLILQ
                     IESNGHSVSFGRMDQYLYPYYRRDVELNQTLDREHAIELLHSCWLKLLEVNKIRSGSH
                     SKASAGSPLYQNVTIGGQTLVDGQPMDAVNPLSYAILESCGRLRSTQPNLSVRYHAGM
                     SNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYAAIGCIETAVGGKW
                     GYRCTGMSFINFARVMLAALEGGRDATSGNVFLPQEKALSAGNFNNFDEVMDAWDTQI
                     RYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGI
                     ANLGNSLAAVKKLVFEQGAIGQQQLAAALADDFDGLTHEQLRQRLINGAPKYGNDDDT
                     VDTLLARAYQTYIDELKQYHNPRYGRGPVGGNYYAGTSSISANVPFGAQTMATPDGRK
                     AHTPLAEGASPASGTDHLGPTAVIGSVGKLPTAAILGGVLLNQKLNPATLENESDKQK
                     LMILLRTFFEVHKGWHIQYNIVSRETLLEAKKHPDQYRDLVVRVAGYSAFFTALSPDA
                     QDDIIARTEHML"
     gene            13729..14544
                     /gene="ybiV"
                     /locus_tag="JN078_001372"
     CDS             13729..14544
                     /gene="ybiV"
                     /locus_tag="JN078_001372"
                     /EC_number="3.1.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-phosphatase YbiV"
                     /protein_id="HAY9040628.1"
                     /translation="MSVKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIEFVVAS
                     GNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQL
                     NFVACGLQSAYVSENAPEAFVALMAKHYHRLKAVKDYQEIDDVLFKFSLNLPDEQIPL
                     VIDKLHIAFDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGN
                     DAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTSPFNS"
     gene            14696..15961
                     /locus_tag="JN078_001373"
     CDS             14696..15961
                     /locus_tag="JN078_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1479 domain-containing protein"
                     /protein_id="HAY9040629.1"
                     /translation="MASTFTSDTLPADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIA
                     TRVAEINALKAQGDAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGW
                     DQSMLDYLDRNRFDEVYKGPGDNFFGTLSTSRPEIYPIYWSQTQMQARQSEEMANAQS
                     FLNRLWTFESDGKQWFNPDVSVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQ
                     RVFANVFNGNLAQYDPWHAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLL
                     HVVPIPEAMAYVLLRPLLDDVPEDELCGVAPGRVLPVSEQWHPLLIEALTSIPKLEAG
                     DSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYAHKVKAALEKGASPGDFP
                     HEDYETNWEGRFTLADLNIHGKRALGMDV"
     gene            complement(16202..17794)
                     /locus_tag="JN078_001374"
     CDS             complement(16202..17794)
                     /locus_tag="JN078_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATPase"
                     /protein_id="HAY9040630.1"
                     /translation="MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFM
                     KILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRI
                     YALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGW
                     KLRVLLAQALFADPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMV
                     CTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANA
                     SKSRQATSRARQIDKIKLEEVKASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPL
                     FKNLNLLLEVGEKLAVLGTNGVGKSTLMKTLVGDLQPDSGTVKWSENARIGYYAQDHE
                     YEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFG
                     KLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILEI
                     TPERVIDFSGNYEDYLRSKGIE"
     gene            18013..18933
                     /gene="ldtB"
                     /locus_tag="JN078_001375"
     CDS             18013..18933
                     /gene="ldtB"
                     /locus_tag="JN078_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HAY9040631.1"
                     /translation="MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVIT
                     IPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIV
                     INSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE
                     YRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDI
                     KFLFEKVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKS
                     VQTVTGQPDVDQVVLDEAIKNRSGMPVRLN"
     gene            complement(18992..20110)
                     /locus_tag="JN078_001376"
     CDS             complement(18992..20110)
                     /locus_tag="JN078_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion transporter"
                     /protein_id="HAY9040632.1"
                     /translation="MSLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHT
                     IITLSGLMLLTKGVELSGYFDVLGRKMVRRFATERRLAMFMVLAAALLSTFLTNDVAL
                     FIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFI
                     AQMAPLAGAMMLTLLLLCWCCFPGKVLQYHTGVQTPEWKPRLVWSCLGLYIVFLTALE
                     FKQELWGLVIVAAGFALLARRVVLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLGNVS
                     HLSEPGLWLTAIGLSQVISNVPSTILLLNYVPPSLLLAWAVNVGGFGLLPGSLASLIA
                     LRMANDRRIWWRFHLYSIPMLLWAALVGYVLLVILPAN"
     gene            complement(20107..20574)
                     /gene="mntR"
                     /locus_tag="JN078_001377"
     CDS             complement(20107..20574)
                     /gene="mntR"
                     /locus_tag="JN078_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese-binding transcriptional regulator
                     MntR"
                     /protein_id="HAY9040633.1"
                     /translation="MSRRAGTPTAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVEL
                     ISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLA
                     QESRERHQIVENFLLVLGVSPEIARRDAEGMEHHVSEETLDAFRLFTQKHGTK"
     gene            20760..20888
                     /gene="mntS"
                     /locus_tag="JN078_001378"
     CDS             20760..20888
                     /gene="mntS"
                     /locus_tag="JN078_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganase accumulation protein MntS"
                     /protein_id="HAY9040634.1"
                     /translation="MNEFKRCMRVFSHSPFKVRLILLSMLCDMVNNKPQQDKPSDK"
     gene            21160..22743
                     /locus_tag="JN078_001379"
     CDS             21160..22743
                     /locus_tag="JN078_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HAY9040635.1"
                     /translation="MNLTLKESLVTRSRVFSPWTAFYFLQSLLINLGLGYPFSLLYTA
                     AFTAILLLLWRTLPRVQKVLVGVSSLVAACYFPFAQAYGAPNFNTLLALHSTNMEEST
                     EILTIFPWYSYLVGLFIFALGVIAIRRKKENEKARWNTFDSLCLVFSVATFFVAPVQN
                     LAWGGVFKLKDTGYPVFRFAKDVIVNNNEVIEEQERMAKLSGMKDTWTVTAVKPKYQT
                     YVVVIGESARRDALGAFGGHWDNTPFASSVNGLIFADYIAASGSTQKSLGLTLNRVVD
                     GKPQFQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVYFLKEGNFEADK
                     NTKDEALLDMTAQVLAQEHSQPQLIVLHLMGSHPQACDRTQGKYETFVQSKETSCYLY
                     TMTQTDDLLRKLYDQLRNSGSSFSLVYFSDHGLAFKERGKDVQYLAHDDKYQQNFQVP
                     FMVISSDDKAHRVIKARRSANDFLGFFSQWTGIKAKEINIKYPFISEKKAGPIYITNF
                     QLQKVDYNHLGTDIFDPKP"
     gene            complement(22792..23307)
                     /gene="ompX"
                     /locus_tag="JN078_001380"
     CDS             complement(22792..23307)
                     /gene="ompX"
                     /locus_tag="JN078_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein OmpX"
                     /protein_id="HAY9040636.1"
                     /translation="MKKIACLSALAAVLAFTAGTSVAATSTVTGGYAQSDAQGQMNKM
                     GGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASI
                     YGVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDV
                     GTWIAGVGYRF"
     gene            complement(23360..23425)
                     /locus_tag="JN078_001381"
     CDS             complement(23360..23425)
                     /locus_tag="JN078_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040637.1"
                     /translation="METFCYMKWPVRHHKSRRVSH"
     gene            23660..24547
                     /gene="rhtA"
                     /locus_tag="JN078_001382"
     CDS             23660..24547
                     /gene="rhtA"
                     /locus_tag="JN078_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/homoserine exporter RhtA"
                     /protein_id="HAY9040638.1"
                     /translation="MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVGAPGVT
                     ALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVA
                     LEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACW
                     AIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVAILS
                     TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAAS
                     MGSTLTVRKESKIKELDIN"
     gene            24846..25349
                     /gene="dps"
                     /locus_tag="JN078_001383"
                     /gene_synonym="pexB"
     CDS             24846..25349
                     /gene="dps"
                     /locus_tag="JN078_001383"
                     /gene_synonym="pexB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001730644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein Dps"
                     /protein_id="HAY9040639.1"
                     /translation="MSTAKLVKSKATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLS
                     LITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKT
                     PLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLW
                     FIESNIE"
     gene            25753..26499
                     /gene="glnH"
                     /locus_tag="JN078_001384"
     CDS             25753..26499
                     /gene="glnH"
                     /locus_tag="JN078_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter substrate-binding
                     protein GlnH"
                     /protein_id="HAY9040640.1"
                     /translation="MKSVLKVSLAALTLVFAVSSHAADKKLVVATDTAFVPFEFKQGD
                     KYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAID
                     FSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPN
                     IDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDEL
                     RDKVNGALKTLRENGTYNEIYKKWFGTEPK"
     gene            26638..27297
                     /gene="glnP"
                     /locus_tag="JN078_001385"
     CDS             26638..27297
                     /gene="glnP"
                     /locus_tag="JN078_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015367581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter permease GlnP"
                     /protein_id="HAY9040641.1"
                     /translation="MQFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFAR
                     TFGGWIANHVALVFIEVIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSG
                     AYIAEITRGAVLSIHKGFREAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIK
                     DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMKI
                     L"
     gene            27294..28016
                     /gene="glnQ"
                     /locus_tag="JN078_001386"
     CDS             27294..28016
                     /gene="glnQ"
                     /locus_tag="JN078_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017491583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter ATP-binding protein
                     GlnQ"
                     /protein_id="HAY9040642.1"
                     /translation="MIEFKNVSKHFGPTQVLHNIDLNIAQGEVVVIIGPSGSGKSTLL
                     RCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP
                     LRVRGANKEEAEKLARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLF
                     DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDG
                     NPQVLIKNPPSQRLQEFLQHVS"
BASE COUNT         6981 a         7539 c         6971 g         6733 t
ORIGIN      
        1 atgtctttgc aatatactcc gtatcgacag aatcaataat attataatta ccttcgctat
       61 tataaataat cagtttttca cgagcgagtt gattcttggc aatgatctca tgaccttgtt
      121 tcaaaaatag aacttcatca ttagcgctga tttgatcaag atactcgttc aaataccgcc
      181 agtttaaatc gacatgaatt ttatctaccg ctaacaaatc gtgatctttg ccgttgatac
      241 gtagcgtaaa agagatacat tttttacccg gacgatcaaa gcaattgtat gccggattcc
      301 agctgttgtt agagtcatct gaagccaccg accacggtcg tttcgatggg ttaaaatcgg
      361 caaaaataac ccgccctgac tcgtcgacaa gcggtccatt tacttgttcc tgatgataaa
      421 caacgatttt atcattcgcc ctccgtgaaa agagataata tttattatca tcaagtacca
      481 gtcccaccga gtctaaaaat ggcatcattt ccattttcag aatcacggcg cgttgaatct
      541 cctctgtatt ttttaataaa tacagtgagt cctttaatgt cagggccgaa cgttcaatat
      601 ctttaaagaa atagccaacg tttttctgaa taagttcaaa gcggctatcg gcacgtttta
      661 ccgcgcgttc cgataccagt tgatagttaa tgatgaaaaa aagaccaata aatgacagtg
      721 ctgccaataa aaataaaatt atcagcctta tctttatctt ttcgtataaa ctcagcatgt
      781 taatacattt aacaaaataa ctatctgaac gctgtgccgc tgcaaaaata gtcccttgct
      841 gcggcttttt aaccaaatta cccgattcta caaaatcagc agaaagttac aacacttgct
      901 tagggcaata atttcctgtg aggtgattac cctttcaagc aatattcaaa cgtaactatc
      961 ctttaatttt cggatccagc gcatcgcgta aaccatcgcc caacaaattg aacgccagta
     1021 cggtcagaaa aatagccagg gccggaaaaa cagcgacatg cggcgcgata accatatccg
     1081 ctcgtgcctc attgagcatt gctccccact ctggtgtcgg cggctgcgca ccgaggccga
     1141 gaaatgacag gctggcggca gagataatcg aggtgccaat gcgcatggtg aaaaacacca
     1201 cgatagacga gacggtccca ggcaagatat gacgcaataa aatggtcata tcgctggcac
     1261 caatactgcg tgctgactca ataaaggttt gctgtttcaa caccagcgtg ttgccgcgca
     1321 ccagtcgggc aaacgcgggg atggaaaaaa tggcgactgc gataatcacg ttagcaatgc
     1381 cgcttcccaa caccgcaaca acagcgatcg ccagtaaaat acccgggaag gcaaacagca
     1441 catcgcaaat gcgcatgatc agccgatccc accagccttc ataatatcca gccaacaagc
     1501 ccagcaacgt cccgatcgcc gcaccgataa acacggcaaa cacgcccgcc gccagcgaga
     1561 tttgcgcacc aaccaggaca cggctgaaaa tgtcgcgccc cagtgaatcg acgccaaacc
     1621 agtgctgcaa agaaggtccg ttattcagat tgtcataatc aaaataattt tcggcgtcat
     1681 agggagcgat ccagcgtgca aaaatggcca ccacaatcaa taaaataacg aataatgcgg
     1741 cggtcatcgc catatgctga cggcgaaatc gtcgccagaa ttcatgccac ggtgtacgca
     1801 cctggtcagg tttgaccagt ggcatggcgt ttaacaccgc ctgacgtcgc cagttaaata
     1861 gtcgcatcct tacttgtacc tgatagccgg gttaatggcg gcgtaaagca catccaccac
     1921 taagttgata agaataaatt ccagcgagaa aagcagaatt tccgcctgaa tcaccgggta
     1981 atcgcgcatt tctacggagt caacgagtaa gcgtccaagt ccgggccagt tgaaaacttt
     2041 ctccaccacg atagaaccac cgagcaaaaa gccaaactgt aagcccatca tggtcactac
     2101 cgggatcatc gcgttacgta gcccgtgttt gaggacaacc caggtttcgc tcaccccttt
     2161 cgccctcgcg gtacgcatat aatcttcgct taaaacatcg acaaacgacg cgcgggtaaa
     2221 gcgcgccatc acggctgcca ctgccgcgcc gagcgtcagg gaggataaaa tgtagtgctg
     2281 ccaactgtct gctcccacgg taggcagcca gcccagttca acggagaata cctgaattaa
     2341 aagcatcccc agcgcaaatg ccggaaacga gatccccgac accgcaatgg tcatactcaa
     2401 tcgatccggc caacgattac gccagacggc ggcgataatt cccgccgcca taccaaatat
     2461 caccgcccag accatactgg ttatggtcag ccacagcgtt ggcataaagc ggctggcaat
     2521 ctcatcggca accggacgac gcgacaccat cgacaggcca aaatccccct gcacagcatt
     2581 gctgatatag tgccagaact ggtgatacag cggctgatcc aaccccagct gctgacgcac
     2641 cagttctata acctgcgcat cagcttcggg cccggcaatc aatcgcgccg gatcgccggg
     2701 cagcatatgc acaaataaaa acaccagcac cgagacgata aacagcgtcg gaatcaaccc
     2761 cagtaagcgt ttgataacgt aattaagcat tccactccct gcgttgctta ttgcaaatcc
     2821 gcgtcttcaa agctgaagcc ggtgtctggc atgatccaaa aaccggtcag gtttttactg
     2881 tgtgccgaca ccagtttttc taccaccagc gggatccacg gcgactcttg ccagatgata
     2941 tcctgcgccg ccttatacaa gcgggtcttt tccgccggat cattagtttt cagtgcctga
     3001 gccaggaagt cgtccacctg tttattgctg taaaatgcgg tattaaacag cgtcggtggc
     3061 cagttttgcg aggcgaacag tggcgatagc gcccagtccg cttcgccggt tgaagccgac
     3121 cagccagtgt agaacatccg cacgccgctc tctttttgcc ctttaccttc aacttctgcc
     3181 gcccgctgtc cggcatccat cgcggtcacc tgggctttaa tcccgacctg cgctaactgc
     3241 tgctgggtaa attgcagcac tttctgcgcg gtgctgtggt tatgtgacga ccacagcgtg
     3301 gtactgaaac cgttgggata tcccgcctct ttcagtaatt cgcgcgcttt cactggatcg
     3361 taaggccacg gtttataact ttgcgcgtag gcgatacttg gcggtaccac accagtagct
     3421 ggcgttgcat agcccgcaaa ggcaactttc accagcgccg gacggttaat ggcgtaattc
     3481 agcgcctcac ggaccttcgg gttatcgaac ggcttttgcg tcacgttcat actgatataa
     3541 cgctgcataa ttgacggact ggccatcaac tcgatatttt tgtttttctc cagcagtgcg
     3601 gcctgctcgt agggaatggg gaaagcaaac tgcgcttcac cggtttgcag cattgccgcg
     3661 cgggtgttgt tatccgccac cggacgccag gttatgctgt ccagtttggg caatcctggc
     3721 tgccagtaac ccgcgaattt tttcaccttc acaaaatcgg tctgattcca ggtatccagt
     3781 tcatacggtc cggttcccac cggatgaaaa ccaatctcct tgccatattt ttccagcgct
     3841 gccggtgaaa tcatcgcggt cgccggatgg acaagaatat taataaacgc tgagaacggc
     3901 tgtttgaggg taatctttac cgttgtcgga tcgatcgcct ccgttttggc aatattctta
     3961 tacaggttat agcgtttaag atgattcgcc ggatcgctgg cccggtccag attcgctttc
     4021 accgccgcgg cgttgaaatc ggtgccatcc tggaatttaa ttccttcccg caatttcacg
     4081 gtgtaagtaa tgccgtcatc ggaaacggta taactctccg ccagcacgtt tttcagtttc
     4141 atctctttat ccagaccgaa cagcccctgg taaaacgatt tcgctacggc ctgagataac
     4201 gtgtcattcg cgtcatacgg atcgagcgtg gtgaaattcg atcctaccgc caccaccaca
     4261 tctttggcag cgaatgcaca agatgccatc aacgctgtcg caatgcccag cgccactaac
     4321 ccactacggt gtacagctct tgccatttta ttctccgcct gaatgttatc tacgcatgaa
     4381 tgcgtattct gattgtggtt gtgcgacgta atgccccggc ccgacgcatt gcaacgagac
     4441 ggctgccacc tcttcgccac gcagatgaat attgctggga agatcgtccg acagcagtac
     4501 acgctgcggt cgttgtcggg acggttcagc gaccggaact gccgccagta atttacgcgt
     4561 ataaggatgc tgcgggtttt cgaagaccgc gcgccgtgga ccaatttcaa caatttgccc
     4621 gagatacatc accgccacac gatgactaat ccgctctacc acggccatat cgtgggagat
     4681 aaacagatac gcaatgccga aatcacgctg gagatcgagc aacaagttga taatctgccc
     4741 gcgaatagaa acatccagcg ccgaaacggc ttcgtcggca atgatcactt ttggattcaa
     4801 tgccaacgcg cgagcaatgc agatgcgctg gcgctgaccg ccggaaaact catgcgggta
     4861 acgccaggca tgttcaggta acaggcccac gcgctccagc aaccacgcaa cgcgtgcagc
     4921 cgcgtcttta cctggcaata aaccgtgtac acacagcggt tcgataatcg aatcaccgat
     4981 ggtctgacgt gggtccagcg aagcgtaagg gtcctgaaaa ataaactgaa tatcccggcg
     5041 caatgcctga agtttgccag gtgacaaggt atcgattcgc tgaccgttaa agataatttc
     5101 gccgccctgc gattcgacca ggcgcagcaa cgcccgcccg gtagtggatt taccgctgcc
     5161 agactcgccc accagcgata gcgtttcgcc aggccagaga tcaaaactga ctttctcaac
     5221 ggcatgcact tcccgcgtta cgcgattcaa caaaccgctg cgcaaaggga aacgggtgac
     5281 aagattacgc actcgtaaaa caggttcgcc atccaccacc gttttctgct cgatgggggg
     5341 ttcctgtttc gctggatgtt caagcgatat caatgggaaa cgtcggggat aatctaaccc
     5401 tttcatcgca ccaagttgcg gaacagcagc taacagcgca cgggtgtaag gatgttgcgg
     5461 tgcatgaaaa atctgttcga cggtacccgt ttccaccgcc tcgccctgat acatcaccag
     5521 tacccgatcg gctatctctg ccaccacgcc catatcgtgc gtgataaaga taacacccat
     5581 cgacatctct ttttgcaata ctttgattaa ttgcaggatc tgcgcctgaa tagtgacatc
     5641 cagcgcggtg gttggctcat cggcaatcag caccgccggg cggcatgaca gcgccatcgc
     5701 aatcatcact cgctggcgca tcccgccaga gagttgatgc ggataacgtg aaagaatggt
     5761 ttgtgcctca ggaatgcgta cctgatccag catccgcttc gcctcgacca tcgcttcttc
     5821 acgactggcg ttctgatgca gacgaattga ttcggcaatc tgttcaccca cagtaaatac
     5881 cgggttcagc gatgtcatcg gctcctgaaa tatcatcgcc atatccgcac cgcgaacatg
     5941 gcgcatttgt gcagcgctct gctcgctaag ttcaatcact tcgcgactgc gccgctgcaa
     6001 cagcatttta tcgcactgta ctaaaccgcc cgcctgttcc aacaggcgca tcaatgccaa
     6061 cgcagtcact gacttaccgg agccggattc gccaacaatt gccagcgtct caccgcgttg
     6121 cagactaaaa gagagattgc ggaccgcagc tattttctgc tggtcctgca taaaggcaat
     6181 attcagattt tcaaccgcca gcacattacc ggcatcaagt tcatcactgt gtggcaacgg
     6241 tgtccccttt ttcacggtag ataccggtgg ttggcgtatc gcctgcgtag ccccaggcgc
     6301 gatacattcc ttcggtgtta aacggtagcg cgacattccc ttcatggccg atagcgatta
     6361 agccaccgct accgccaagc gcagggagtt tttccattac tacccgctcg caggcttccg
     6421 cgagacttaa tccgccgtaa tccattaacg cggcgatgtc atatgccgcc agcgcgcgga
     6481 tgaagacttc gcccgtgccg gtacaagaaa ccgccacact ggcgttattg gcgtagcatc
     6541 cggcacccac taagggacta tcgccaactc gtccgggtaa tttattggtc attccgcctg
     6601 tggacgtggc tgccgccaaa ttgccgtcta aatccaacgc cacggccccc acggtgccca
     6661 ttttctgttt ttcatccagt ggcgcaccgc tatggtcgag gacggttgcc ccttccttgc
     6721 gcgctgccag tagttgttca taacgcaaag gcgtggagaa aatcgccggc gagacgcgct
     6781 ccatgccacg agcaaacgca aaattttctg ccccttcgcc aatcatcatc acatgcgggc
     6841 tttgctccat caccagccgg gcggcaagaa ccggattacg cagatgacta acgcccgcca
     6901 ccgcaccggc tttcagggtg ttaccatcca tcacacaggc gtccagttca tgggtttcat
     6961 cacgcgtaaa gacagcgcca attccggcgt taaacagtgg acactcttcc agcagacgca
     7021 ccgcttccgt caccacatcc agcgcacttt cgcccgcttc cagcattttc tgcccggttt
     7081 caacaatggc agacaacgcc tcaatgtagc gtaattcctg ttgcagactc atctgcgcgc
     7141 ggctaattgc acctgcgcca ccatgaattg caatgactgc tttgcccata gtattcgtcc
     7201 attaagggtg gctcgccact tttgctataa atatcagaat ttttatgaat tactcattca
     7261 atttttgaat atagaaagat ggatatggca tgtaaaggca ggagccaacg ctacgcccga
     7321 ggtggcatac agtctgtggc gtttttctga cataataggc aaattcgatt ttgcctccgc
     7381 aggagtgttt tcatggaatt taccaccgga ttgatgtcgc tcgacaccgc gcttaatgag
     7441 atgctttctc gcgtcacccc actgaccgcc caggaaacgc tgccactggt acagtgtttt
     7501 ggtcgtattc tggcgagcga tgtcgtttcg ccgcttgatg ttccggggtt tgataactcc
     7561 gcaatggacg gctacgcggt gcgtttagcc gatattgcct ccgggcaacc gctgcccgtt
     7621 gccggtaaat cctttgccgg tcagccgtat catggtgaat ggcctgcggg cacctgcatt
     7681 cgtattatga ccggtgcgcc ggtgccggaa ggctgcgaag cggtggtgat gcaggagcag
     7741 actgaacaaa cggacaatgg cgtgcgtttt actgctgaag tgcgtagcgg gcaaaatatt
     7801 cgccgtcgcg gtgaagatat ctctgcaggt gcggttgttt tcccggcggg aactcgcctg
     7861 actaccgcag agctgccagt aattgcttca ctggggattg ccgaagttcc ggtgattcgt
     7921 aaagtgcgtg tagcgctttt ttctaccggt gatgaactcc agttgcccgg tcagccgctg
     7981 ggtgacggcc aaatctacga caccaaccgt ctcgccgtac acctgatgtt agaacagctg
     8041 ggttgcgagg taatcaactt agggattatc cgcgacgatc cccatgccct gcgcgccgca
     8101 tttattgaag ccgacagcca ggcggatgta gtgatcagtt ccggcggtgt ttcagtgggt
     8161 gaagcggatt acaccaaaac gattcttgaa gagctggggg agatcgcctt ctggaagctg
     8221 gcgattaaac caggtaaacc gttcgcgttc ggtaaactca gcaatagctg gttctgcggc
     8281 ctgccgggca acccggtttc agcgacgctg accttctatc aactggtaca gcctttgctg
     8341 gcaaaactaa gcggcaacac cgccagcggc ctgcccgcgc gccagcgcgt acgcacagcg
     8401 tcccgcctga aaaaaacgcc aggacgtctt gatttccagc gcggcgtgct gcaacgcaac
     8461 gccgacggtg aacttgaagt gacgaccacc ggacatcagg gttcacatat atttagctcc
     8521 tttagtctcg gcaactgctt tatcgtgctg gaacgcgatc gcggcaatgt ggacgtgggc
     8581 gaatgggtgg aagtagaacc gtttaacgcg ttgttcggag gcctgtaatg gcggaactca
     8641 gcgatcagga gatgctgcgc tacaaccggc aaatcattct gcgcggtttt gattttgacg
     8701 gtcaggaggc gctaaaagat tctcgtgtgc tgatcgtcgg cctcggtgga ctcggctgcg
     8761 cagcttcgca gtatctggca agcgccggtg tcggcaacct gacgctgctc gacttcgaca
     8821 cggtttcgct ctcgaatctg caacgccaga cactgcacaa tgatgccacg gtcgggcaac
     8881 cgaaggtgga atccgcccgt gacgccctga cgcggatcaa cccacatatc gcgattacgc
     8941 cagtcaatgc actgctagat gacgcagaac ttgcagcatt gattgctgaa tacgatctgg
     9001 tgctcgactg tacggataac gttgcggtac gtaatcaact gaacgcaggc tgttttgccg
     9061 cgaaggtgcc gctggtttcc ggcgcggcaa ttcgtatgga agggcaaatc acggtcttca
     9121 cttatcagga cggcgaaccg tgctatcgct gccttagccg tttgtttggc gagaacgcgt
     9181 taacctgcgt agaagcaggc gtgatggcac cgttgatcgg cgtaattggt tcgttgcagg
     9241 caatggaagc gatcaaactg ctggcaggtt atggcaaacc ggccagcggg aaaatcgtca
     9301 tgtacgatgc gatgacctgt cagtttcgcg aaatgaaact gatgcgtaat ccggggtgtg
     9361 aggtgtgcgg gcagtaattg ccacctccag gccagataag acgcggcact ccgccacgtc
     9421 atcagcaatt tatgaggatg cagaacgtcc ggttaaatcg acgttctgcc aaacgctccc
     9481 agccagtcct gttcaaactt cgccacagcg gcatcaaccg ccggatagct aatcatctgt
     9541 tgtgccacat ccagtggcag cgtaattgat tcacatcctg ccagtaagca gtccagcgcc
     9601 tgacgcgggt ttttgaaact cgctgccagc actttcgcct gcggcgcatg cattttcaat
     9661 aactggtgta agtcggtcac agtctgaatg ccgctaccgc cctgagcatc aatacgatta
     9721 acgtaaggcg caacatattc cgcacctgcc agcgccgaca gcagcccttg tgctgcgcca
     9781 tataccgcgg ttcccagcgt tggaatccct tccgctttta acatcttaat agctgccagc
     9841 ccctcggcgg tcaccggaac tttcaccacg atatccgcaa taatagaacg caatttacgt
     9901 gcgtcattca ccatcccttc agcagtggta gccattacct gggcaaacag acgcccctga
     9961 ccgcccatcg cttcatgaag ttgcggaagc acaacatcca gcggtttttt acccgcggcg
    10021 ataatgcttg ggttagtggt cacacccgcc agcggaaaaa tacgtgacag cgccttcact
    10081 gcaacaacgt ctgaagtatc cagatacagt tccataacca tcctcaaaat gtactttttg
    10141 tctgaatgta gactatcacg ggaaaactct ctgaacagtt gacgcacatc aatccaactt
    10201 tcattcgaaa gtattttaat gtttgaacga aacagagagg caactatgat tttcaatatt
    10261 cagcgctact cgacccatga tggccccggt atccgcacgg tcgtatttct taaaggctgt
    10321 tcgctgggct gccgctggtg tcagaacccg gaaagccgcg cccgcacgca ggatctgctg
    10381 tatgacgcac gactgtgtct ggaaggctgc gagctgtgcg ctaaggcagc gccggaagtg
    10441 attgagcgcg cattgaatgg tttgcttatt catcgggaaa agttaacccc ggagcatctg
    10501 acggcgctaa ccgactgctg cccgacacag gcgttaaccg tgtgtgggga agtgaaaagc
    10561 gttgaggaga tcatggcgac cgttctgcgc gataaaccgt tttacgatcg cagcggcggc
    10621 ggcttaacgc tttcgggtgg tgaacccttt atgcagccgg aaatagcgac ggcgctactg
    10681 caagcctgcc acgaggcagg cattcatact gcggtagaaa cctgtctgca tgtgccgtgg
    10741 aaatatatca ccccttctct gccctatatc gatctgtttc ttgccgattt aaaacacatt
    10801 gccgacgcgc cgtttaaaca gtggaccgac ggtaacgccg ccaaggtgct ggataacctg
    10861 aaaaaactcg ccgcagcggg caaaaaaatc attatccgcg tgccgctgat tcagggcttt
    10921 aatgccgacg aaacctctgt aaaagccatt accgattttg ccgccgacga gctgcacgtt
    10981 ggcgaaattc attttctgcc ctaccacacg ctgggcatca acaaatatca cttacttaat
    11041 ctgccctatg acgccccgga aaaaccgctt gatgcgccag acctgctcga ctttgcccag
    11101 cagtatgcct gccagaaagg gttaaccgcg accttacgag gataacaacc atgaccacac
    11161 tgaaactgga cacgctcagc gaccgcatta aagcgcacaa aaatgcgctg gtgcatattg
    11221 tgaaaccgcc ggtctgtacc gagcgcgcgc agcactatac cgagatgtat caacaacatc
    11281 tcgataagcc gatcccggta cgtcgcgcgc tggctctggc gcatcacctg gcgaatcgca
    11341 ccatctggat caagcacgat gagttgatca tcggcaacca ggcaagcgag gttcgcgctg
    11401 cgccgatctt cccggaatat accgtctcgt ggatcgaaaa agagattgat gatctggcag
    11461 atcgtcccgg tgctggtttt gcggtgagcg aagagaacaa acgcgttctg catgaagtgt
    11521 gcccgtggtg gcgcggtcag acggtacagg atcgctgcta cggcatgttt accgatgagc
    11581 aaaaaggtct gctggcgacc ggaatcatta aagcggaagg caatatgacc tccggcgatg
    11641 cgcacctggc ggtgaatttc ccgctgctgc tggaaaaagg tcttgatggt ctgcgcgaga
    11701 aagtagcgga acgtcgctcg cgcatcaatc tgacggtact ggaagatttg cacggcgaac
    11761 agttcctgaa agcgattgat atcgtgctgg tggcagtcag cgaacacatt gaacgttttg
    11821 cagccctggc gcgtgaaatg gccgcgaccg aaacccgcga aagccgtcgc gatgaactgc
    11881 tggcgatagc agaaaactgc gatcttatcg cccaccagcc gccgcagact ttctggcagg
    11941 cgctgcaact gtgttacttc atccagttga tattgcagat cgaatctaac ggtcactcgg
    12001 tatcgtttgg tcgtatggac cagtatctct acccgtacta tcgccgagac gttgaactca
    12061 accagacact ggatcgcgaa cacgccatcg aattgctgca tagctgctgg ctgaaactgc
    12121 tggaagtgaa caagatccgc tccggctcac actcaaaagc ctctgcggga agtcctctgt
    12181 atcagaacgt caccattggc ggacaaactc tggttgatgg tcaaccaatg gacgcggtga
    12241 atccactctc ttacgcgatc ctcgaatcct gcggtcgcct gcgttccact cagcctaacc
    12301 tcagcgtgcg ttaccatgca ggaatgagta atgatttcct cgacgcctgc gtacaggtga
    12361 tccgttgcgg cttcgggatg ccggcgttca acaacgacga aatcgtgatc ccggaattta
    12421 ttaaactcgg tattgaaccg caggacgctt acgactacgc agcgattggt tgtatcgaaa
    12481 ccgccgtcgg tggcaaatgg ggctatcgct gtaccggcat gagctttatc aacttcgccc
    12541 gcgtgatgct ggcggcgctg gaaggcgggc gtgatgccac aagcggcaac gtgttcctgc
    12601 cacaagaaaa agcgttgtcg gcaggcaact ttaacaattt cgatgaagta atggacgcgt
    12661 gggatacgca aatccgttat tacacgcgta aatcaatcga aatcgaatat gtcgtcgaca
    12721 ccatgctgga agagaacgtg cacgatattc tctgctcggc gctggtggat gactgtattg
    12781 agcgagcgaa aagtatcaag caaggcggcg cgaaatatga ctgggtttct ggcctgcagg
    12841 ttggcattgc caacctcggc aacagcctgg cggcagtgaa gaaactggta tttgaacagg
    12901 gcgcgattgg tcagcaacag ctggctgccg cactggcgga tgacttcgat ggcctgactc
    12961 atgagcaact gcgtcagcgg ctgattaacg gtgcgccgaa gtacggcaac gacgatgata
    13021 ctgtcgatac gctgctggct cgcgcttatc agacctatat cgacgaactg aaacagtacc
    13081 ataatccgcg ctacggtcgt ggtccggttg gcggcaacta ttacgcgggt acgtcatcta
    13141 tctccgctaa cgtaccgttt ggtgcgcaaa ctatggcaac gccggacggg cgtaaagccc
    13201 acaccccgct ggcagaaggc gctagtccgg cctctggtac tgaccatctc ggccctactg
    13261 cggtcattgg ctcggtgggt aaactgccta cggcagcgat tctcggcggc gtgttgctca
    13321 accagaaact gaatccggca acgctggaga acgaatctga caagcagaag ctgatgatcc
    13381 tgctgcgcac cttcttcgag gtgcataaag gctggcatat tcagtacaac atcgtttccc
    13441 gcgaaacgct gctggaggcg aaaaaacatc cggatcagta ccgcgatctg gtagtgcgtg
    13501 tcgcgggtta ttccgccttc ttcaccgcgc tctctccaga cgctcaggac gatatcatcg
    13561 ctcgtactga acatatgctg taatctcttc ggcccggctg cggcgtcgcc gggctaaatc
    13621 attcacatca tcaatttcat ccttactttc attcgaaata taatttgtgc tctgcgtcac
    13681 attgttatta cactgttacg gtttcatttt cgagccagga gcacacctat gagcgtaaaa
    13741 gttatcgtca cagacatgga cggtactttt cttaacgacg ccaaaacgta caaccaacca
    13801 cgttttatgg cgcaatatca ggaactgaaa aagcgcggca ttgagttcgt tgtcgccagc
    13861 ggtaatcagt attaccagct tatttcgttc tttcctgagc taaaggatga gatctctttt
    13921 gtcgcggaaa acggcgcact ggtttacgaa catggcaagc aactgttcca cggcgaactg
    13981 acccgacatg aatcgcggat tgttattggc gagttgctaa aagataagca actcaatttt
    14041 gtcgcctgcg gtctgcaaag tgcatatgtc agcgaaaatg cccccgaagc atttgtcgca
    14101 ctgatggcaa aacactacca tcgcctgaaa gctgtaaaag attatcagga gattgacgac
    14161 gtactgttca agttttcgct caacctgcca gatgaacaaa tcccgttagt gatcgacaaa
    14221 ctgcacatag cgttcgatgg cattatgaaa cccgtcacca gtggttttgg ctttatcgac
    14281 ctgattattc ccggtctaca taaagcaaac ggtatttcgc ggttactgaa acgctgggat
    14341 ctgtcaccgc aaaatgtggt agcgattggc gacagcggta acgatgcgga gatgctgaaa
    14401 atggcgcgtt attcctttgc gatgggcaat gctgcggaaa acattaaaca aatcgcccgt
    14461 tacgctaccg atgataataa tcatgaaggc gcgctgaatg tgattcaggc ggtgctggat
    14521 aacacatccc cttttaacag ctgacctctc taccggagcc gtgcgctccg gttttccctt
    14581 ctttttacat cctgtacatc acatcaaatc attaaacttg cattaactta tttataactt
    14641 atattgtcac atgcaaatca taatggtttc gaatgaaagt taatgagagg tggttatggc
    14701 ttctactttt accagcgaca cattgccagc cgatcacaaa gcagctatcc gtcagatgaa
    14761 gcacgcgctg cgggcgcagc ttggcgacgt ccagcagatc tttaatcagc taagcgatga
    14821 cattgccacg cgagtggctg aaatcaacgc actcaaagca cagggcgatg ccgtctggcc
    14881 ggtgctgtct tatgccgata tcaaagcagg tcatgttact gcagagcagc gcgaacagat
    14941 taaacgtcgc ggttgtgcgg tgataaaagg ccatttcccc cgcgaacaag cgctaggctg
    15001 ggatcagtcg atgctggact atctggaccg caaccgcttt gacgaggtct acaaaggccc
    15061 cggcgataat ttcttcggga cgctcagcac ttcacgtccc gagatttacc ccatctactg
    15121 gtcgcagacg caaatgcagg cccgccagag tgaagaaatg gcgaatgcgc agtcgtttct
    15181 caatcgtctg tggacatttg aaagtgatgg aaagcaatgg tttaacccgg atgtgagcgt
    15241 catctaccct gaccgtatcc gccgccgtcc gcccggaacg acctccaaag gtcttggagc
    15301 gcataccgac tccggggcgc tggaacgctg gctgcttcca gcgtatcagc gcgttttcgc
    15361 caacgtcttt aatggcaatc tggcgcaata tgatccctgg catgcggcac atcgtacgga
    15421 agttgaagag tacacggtgg acaacaccac caaatgttcc gtgtttcgga cattccaggg
    15481 ctggacagcg ctctctgata tgctgcctgg tcaggggttg ctgcacgttg tgcccattcc
    15541 tgaagccatg gcgtacgtac tgttacgtcc gctgcttgat gatgtgccgg aggatgaact
    15601 gtgcggcgta gcgcccggaa gagtgttgcc ggtatcagag caatggcatc cactgttaat
    15661 tgaggcgtta accagcattc caaaactcga ggccggagac tccgtctggt ggcactgcga
    15721 cgtcatccat tccgttgccc ccgttgaaaa tcaacagggt tggggcaacg tgatgtacat
    15781 tcctgcggca ccgatgtgcg agaaaaatct tgcctacgcg cacaaggtga aggccgcact
    15841 ggaaaaaggc gcatcgccgg gcgacttccc gcacgaggac tatgaaacaa actgggaagg
    15901 acgctttacg cttgccgacc tcaacattca cggtaagcga gcgttgggca tggatgtttg
    15961 agagttaatg gaagtgaatt gatgtgggat taagaaaatc gattcgacgt tactcagatt
    16021 gctgacaagt gcgctttctt aatgcctgat gcggcgttaa cgccttatct ggcctacaaa
    16081 gtcctgcaga ttcaatatat tacaggtact gcgtaggcct gataagcgta gcgcatcagg
    16141 ctattttgca tttgtcatca gccgccgtca ccccgacagt atcggggtga cggataatca
    16201 cttactcgat ccctttacta cgcaggtaat cttcgtaatt accgctaaag tcgatcacgc
    16261 gttccggggt gatttccaga atgcgggtcg ccagggagct tacgaactca cggtcgtgtg
    16321 aaacaaagat cagcgtgccc tgatacagtt ccagcgccat gttcagtgac tcgatggatt
    16381 ccatatccag gtggttggtc ggttcgtcca tgatcagaat gttcggcttc tgcatcatta
    16441 acttaccaaa cagcatccgc cctttttccc caccggaaag cactttagct ggctttttga
    16501 tgtcgtcctg gctgaacagc aaacgaccga gaatgctgcg taccgcctgc tcgtcatcgc
    16561 cttcctgctt ccactgactc atccattcga acacggtcag atcattttca aactcatatt
    16621 cgtggtcctg ggcgtagtaa ccaatgcgcg cgttttcaga ccattttacg gtgccgctgt
    16681 ccggttgcag atcgcccacc agcgttttca tcagcgttga tttaccgacg ccgttggtac
    16741 ccagtaccgc aagtttttca ccgacctcca gcagcaggtt gagattttta aacagtggac
    16801 cgttatcaaa ccctttggtc agaccttcca cttccagcgc gttacggaac agtttcttat
    16861 cctgttcaaa acggatgaac gggttctgac ggctggaggc tttcacctct tccagtttga
    16921 ttttatcaat ctggcgcgcg cgcgaagttg cctggcgaga tttcgaggcg ttggcgctaa
    16981 agcggctaac gaaagattgc aactcagcaa tctgcgcttt cttcttggcg ttatcggcca
    17041 gcagacgttc acgcgcctgg gtcgccgccg tcatgtactc atcgtagtta cccggataaa
    17101 cgcgcagctc gccgtaatcc agatccgcca tgtgggtaca gaccatgtta aggaagtgac
    17161 ggtcgtgcga gatgatgatc atggtgctgt cacgctcgtt cagcacctgt tccagccagc
    17221 gaatggtgtc gatgtcgagg ttgttggtcg gttcgtcgag caggagaata tccggatcag
    17281 caaacagcgc ctgcgccaga agcacacgca gcttccagcc aggagcaact tcactcatcg
    17341 ggccgtagtg ctgttccact ggaattccca cgccaagcaa caattcaccg gcgcgagctt
    17401 ccgcagagta accgtccatt tcgccgtatt taacttccag atcggccact ttatagccgt
    17461 cttcctcact catttccggc aaagcataga tgcggtcacg ctcctgcttc acttcccaca
    17521 actctttatg ccccatgatc accgtatcca gcacagtgaa ctcttcaaag gcaaactgat
    17581 cctgacgcag cttaccaatg cgctcgttgg gatcgaggga aacgttaccc aaagtcggct
    17641 ctaagtcgcc gccgaggatc ttcataaagg tggatttacc actaccgttc gcgccaatca
    17701 ggccgtaacg gttgccgccg ccaaatttga cggaaatgtt ttcaaacaac ggcttactgc
    17761 cgaactgcat ggtgacgtta ctggaaacta acacaggcgt atcctgaaaa gagatatgac
    17821 aaaccgcgca ttatgccata agtctgaaag aagatcctgc tcctcgctta aggtctacac
    17881 tcaagccaaa ggcaaaaaat gtgatttcgt acacatctga tttcactgtg agctggaatg
    17941 aacttataat gcgcttccaa tactctaata ttctcaaccc aatggcctgc caggcacaaa
    18001 atctcgctta acatgaatat gaaattgaaa acattattcg cagcggcctt cgctgttgtc
    18061 ggcttttgca gtaccgcctc tgcggtaact tatcctctgc caaccgacgg gagtcgcctg
    18121 gttggtcaga atcaggtgat caccattcct gaaggtaaca ctcagccgct ggagtatttt
    18181 gccgcggagt accagatggg gctttccaat atgatggaag cgaacccggg tgtggatacc
    18241 ttcctgccga aaggcggtac tgtactgaac attccgcagc agctgatcct gccggatacc
    18301 gttcatgaag gcatcgtcat taacagtgca gagatgcgtc tgtattacta tccgaaaggg
    18361 accaacaccg ttatcgtgct gccgatcggc attggtcagt taggcaaaga tacgcctatc
    18421 aactggacca ccaaagttga gcgtaagaaa gcaggcccga cctggacgcc gaccgcaaaa
    18481 atgcacgcag agtaccgcgc tgcgggcgaa ccgcttccgg ctgtcgttcc ggcaggtccg
    18541 gataacccga tgggtctgta tgcactctac atcggtcgcc tgtatgctat ccatggcacc
    18601 aacgccaact tcggtatcgg cctgcgtgta agtcatggtt gtgtgcgtct gcgtaacgaa
    18661 gacatcaaat tcctgttcga gaaagtaccg gtcggtaccc gcgtacagtt tattgatgag
    18721 ccggtaaaag cgaccaccga gccagacggc agccgttata ttgaagtcca taacccgctg
    18781 tctaccaccg aagcccagtt tgaaggtcag gaaattgtgc caattaccct gacgaagagc
    18841 gtgcagacag tgaccggtca gccagatgtt gaccaggttg ttcttgatga agcgattaaa
    18901 aaccgctccg ggatgccggt tcgtctgaat taatcttcaa aacttaaagc aaaaggcgga
    18961 ctcataatcc gcctttttta tttgccagac cctagttggc cgggagtata actaacaaaa
    19021 catatcccac caacgccgcc cacaacagca tcggtattga atagagatgg aaacgccacc
    19081 agatgcggcg atcgttcgcc atacgtagcg caatcaaact tgccagcgat ccgggtaata
    19141 acccaaagcc acctacgttt accgcccatg ccagtaataa agacggcggc acatagttca
    19201 gcaacaatat ggtactcggc acgttactga tcacctgcga taaaccgatt gccgttaacc
    19261 ataacccggg ttcagataga tgactcacgt tacccaacac gccttgcaac gctggaagct
    19321 gggtcagtaa atggacgtcg ataaacatcg ccataaacac cagcagcagc gtccagtcca
    19381 cactgagcac cacgcgacgt gccagcagcg caaagcctgc cgccacaatc accagtcccc
    19441 acagctcttg tttgaactcc agcgccgtta gaaagacgat atacagcccc agacaactcc
    19501 acaccagccg cggtttccac tccggtgttt gcacccccgt atggtattgc agcacctttc
    19561 cagggaaaca acaccagcac aggagcagga gcgtcagcat cattgcgcca gccagcggtg
    19621 ccatttgggc aataaatccg gcaaacgaaa gaccagaacg tccccagata agaatatttt
    19681 gcgggttgcc aattggcgtc agtagcgaac cagcattgac tgccagcgcc tcaaaaataa
    19741 tcagacgatt aaccgggatc tcacacagtc tttttagcgt gatagtcagc ggaacaacaa
    19801 taaacagcgc gacatcgttg gtcagaaagg tagaaagcag cgccgccgcc agcaccataa
    19861 acatcgccag ccgacgctcc gtagcaaagc ggcgcaccat tttgcgcccc agcacatcaa
    19921 aataaccgct taactccaca cctttggtca gcagcatcag gccgcttaag gtgatgatgg
    19981 tgtgccagtc gatagcagca ggccaggatt tcggtgcaaa gggcacgaaa aagcttaatc
    20041 cgataccaac aagaattaat aactgaaaaa aacgatcgcc ttgcagcgtg cgtaaaaaag
    20101 gcaggctcat ttggtaccgt gtttctgggt aaacaaacga aaagcgtcga gcgtctcttc
    20161 actaacatgg tgctccatgc cttccgcgtc gcgacgggcg atttccggac tgacgcccaa
    20221 caccaacaag aaattttcga ctatctgatg tcgctcgcgg ctttcctgcg ccagcttctc
    20281 tccttctgcc gttaaaaaca cgccacgcca ggggatcatt tcaatcagcc ccatggttgc
    20341 cagccgctta agcattttag ccaccgtcgg ttgcgaaact cccagacgag cagccatgtc
    20401 cacctgacga gcttccccca cttccctgat caagtcagaa atcagctcaa cgtaatcatc
    20461 aataagctcg cgccgatgcg cctctctgac ctggcggaac ccttcaacgt gctcttccac
    20521 gttcactaac tgcgtcactt tttttgctgt tggcgtacct gcgcgacgac tcattgtgct
    20581 tcctcattat ggtgacgcat acatagcgtt ctcatttcgt gcgcacattg taaaccagag
    20641 ttgcgaaggt acaaaaaatt aacgttttag caatagctat ataatatagc ctgtgctata
    20701 tctgtatgta atgcaatcat ccctcaagga tcgacgggat tagcaagtca ggaggtctta
    20761 tgaatgagtt caagaggtgt atgcgcgtgt ttagtcattc tccctttaaa gtacggttaa
    20821 tactgctctc tatgttgtgc gatatggtca acaacaaacc gcagcaagat aaaccttccg
    20881 ataaatagcg gcgtcgcggt acgccgcttc actcctgctt tcatgcaggc ataacgcgtt
    20941 ttggcctgaa aaaccccact ttttgtcgga tttgcaatcc ccttcgcaaa agatttgttc
    21001 gtcagtagtt gacctgaacg gcggctcgct ctatcttctt gcagccctgc gtatattgcg
    21061 gctcgcggat gcggacccct ttccactctt cacgcactct tgcaggtatt gacccttgac
    21121 gccagggtaa gcacatggcg tttgttacga tagtggcata tgaatttaac cctcaaagaa
    21181 tcgcttgtta cccgtagccg ggtatttagc ccgtggactg cgttctactt tttacagtcg
    21241 ctattaatta acctcggctt aggttacccc ttcagtttgc tctacaccgc tgcgtttacg
    21301 gctattttgc ttttgctatg gcgaacattg cctcgcgtac aaaaagttct ggtcggtgtc
    21361 agttcgctgg tggcggcttg ttatttccct tttgctcagg cctacggcgc gcctaatttc
    21421 aatacattgc tggcattgca ctccaccaat atggaagagt cgaccgaaat cctgacgatt
    21481 tttccgtggt acagctacct ggtcggctta tttatttttg cgctcggcgt aatagcaatc
    21541 aggcgaaaaa aagagaatga aaaagcgcgc tggaatacct tcgacagcct gtgtctggta
    21601 ttcagtgtgg cgacattttt tgttgctccc gtgcaaaacc tggcctgggg tggcgtattt
    21661 aaactgaaag atactggcta tccggtattt cgttttgcta aggatgtcat cgtcaataat
    21721 aacgaggtga ttgaagagca agaacggatg gcaaaacttt ccggaatgaa agatacctgg
    21781 acggtcactg ccgttaagcc gaagtatcag acctatgtgg tggtgatcgg tgaaagcgcg
    21841 cgtcgcgatg ccctcggtgc ctttggcggt cactgggaca ataccccgtt tgccagcagc
    21901 gttaacggtt tgatatttgc tgactacatt gccgccagtg gctccacgca gaaatcgctt
    21961 ggcttaacgc tcaatcgcgt agtcgatggc aaaccacagt ttcaggataa ctttgtcacc
    22021 ctggcaaatc gcgcgggctt ccagacctgg tggttttcca accagggcca aatcggcgaa
    22081 tacgatactg ctatcgccag catcgccaaa cgtgcagatg aagtgtactt cctgaaagaa
    22141 ggtaattttg aagcagataa aaacacgaaa gacgaagcgt tactggatat gaccgctcaa
    22201 gtgctggcgc aagagcactc gcaaccgcag ctgattgttc tgcatctgat gggctcgcat
    22261 ccgcaggcct gcgacaggac acaaggcaaa tacgaaacct ttgtgcaatc gaaagaaacg
    22321 tcgtgctatc tctataccat gacgcaaacg gacgatttac tgcgcaagct gtacgatcag
    22381 ttacgcaaca gcggcagcag cttctctctg gtttactttt ctgaccacgg tctggccttt
    22441 aaagagcgcg gcaaagacgt gcaatacctt gcccatgatg ataaatatca gcaaaatttc
    22501 caggtgcctt ttatggtcat ttccagcgac gataaagcgc atcgggtgat taaagcccgc
    22561 cgctcagcca atgacttctt aggctttttc tcgcagtgga cgggaattaa agcgaaggaa
    22621 ataaatatca aatacccgtt tatatctgag aagaaagccg ggccgatata catcaccaac
    22681 ttccagttac agaaggtgga ttacaaccat ctcggaaccg atattttcga cccgaaacct
    22741 taaaaacaaa aatccgcccc gagaggcgga ttttttatat caccaaagtg attagaagcg
    22801 gtaaccaaca ccggcaatcc aggtgcctac gtcaacgcta cgaatacggc tctgctcgta
    22861 agagaagtcc agagcaacgt tttccatcgg gttgaactgc agaccagcac cgtaggagaa
    22921 accgtagtcg ctggtgtcgt gtttgtaggt cgggtattca gtggtctgga atttaccata
    22981 acccacaccc actacaccgt agatgcttgc ccagtcgtta atgcggtaag ccggaccagc
    23041 agtgatgccg tagtactggt ttttgttgta gtcaccagag cttgcagtac gacttttctc
    23101 ggtgtaagtg aaagaaccga tcacacccag cgggctgttg tcttcttcat agcggtattt
    23161 caggttgaaa ccgcccattt tgttcatttg gccctgagcg tcgctctgtg cgtaaccgcc
    23221 agttacggta gaagtcgcag ctacggaagt acctgcggtg aaagccagaa ctgcggccag
    23281 tgctgaaaga catgcaattt ttttcataac cacctcaaat gtgattcaaa taagtcctaa
    23341 gttttaaata tatcaaaaat taatgggaaa ctcttcgcga tttgtgatgt ctaacgggcc
    23401 atttcatgta acagaacgtt tccatacacc gctatccatc taaatttaaa tcactttttc
    23461 agagaactgc gtaagtatta cgcatgtttt ccctgtcatt catccagatt attcctaatc
    23521 accagactaa tgattccatc aatcctggcg cattttaatc aaaacggggg aaaatttttt
    23581 caacaaatgc tcaaccagca ttgggtatat ccagtacact ccacgcttta cttaagtcta
    23641 gatatttgtg ggagaaagga tgcctggttc attacgtaaa atgccggtct ggttaccaat
    23701 agtcatattg ctcgttgcca tggcgtctat tcagggtgga gcctcgttag ctaagtcact
    23761 ttttcctctg gtgggcgcac cgggtgtcac tgcgctgcgt ctggcattag gaacgctgat
    23821 cctcatcgcg ttctttaagc catggcgact gcgctttgcc aaagagcaac ggttaccgct
    23881 gttgttttac ggcgtttcgc tgggtgggat gaattatctt ttttatcttt ctattcagac
    23941 agtaccgctg ggtattgcgg tggcgctgga gttcaccgga ccactggcgg tggcgctgtt
    24001 ctcttctcgt cgcccggtag atttcgtctg ggttgtgctg gcggttcttg gtctgtggtt
    24061 cctgctaccg ctggggcaag acgtttccca tgtcgattta accggctgtg cgctggcact
    24121 gggggccggg gcttgttggg ctatttacat tttaagtggg caacgcgcag gagcggaaca
    24181 tggccctgcg acggtggcaa ttggttcgtt gattgcagcg ttaattttcg tgccaattgg
    24241 agcgcttcag gctggtgaag cactctggca ctggtcggtt attccattgg gtctggctgt
    24301 cgctattctc tcgaccgctc tgccttattc gctggaaatg attgccctca cccgtttgcc
    24361 aacacggaca tttggtacgc tgatgagcat ggaaccggcg ctggctgccg tttccgggat
    24421 gattttcctc ggagaaacac tgacacccat acagctgctg gcgctcggcg ctatcatcgc
    24481 agcttcaatg gggtctacgc tgacagtacg caaagagagc aaaataaaag aattagacat
    24541 taattaaatt tacatttctg catggttatg cataaccatg cagaatttct cgctactttt
    24601 cctctacacc gtctttatat atcgaattat gcaaaagcat atttattccg aaaattcctg
    24661 gcgagcagat aaataagaat tgttcttatc aatatatcta actcattgaa tctttattag
    24721 ttttgttttt cacgcttgtt accactatta gtgtgatagg aacagccaga atagcggaac
    24781 acatagccgg tgctatactt agtctcgtta attactggga cataacatca agaggatatg
    24841 aaattatgag taccgctaaa ttagttaaat caaaagcgac caatctgctt tatacccgca
    24901 acgatgtctc cgacagcgag aaaaaagcaa cagtagagtt gctgaatcgc caggttatcc
    24961 agtttattga tctttctttg attaccaaac aagcgcactg gaacatgcgc ggcgctaact
    25021 tcattgccgt acatgaaatg ctggatggct tccgcaccgc actgatcgat catctggata
    25081 ccatggcaga acgtgcagtg cagctgggcg gtgtagctct ggggaccact caagttatca
    25141 acagcaaaac cccgctgaaa agttacccgc tggacatcca caacgttcag gatcacctga
    25201 aagaactggc tgaccgttac gcaatcgtcg ctaatgacgt acgcaaagcg attggcgaag
    25261 cgaaagatga cgacaccgca gatatcctga ccgccgcgtc tcgcgacctg gataaattcc
    25321 tgtggtttat cgagtctaac atcgaataaa tccatcgctg atggtgcaga actttagtac
    25381 ccgataaaag cggcttcctg acaggaggcc gttttgtttt gcagcccacc tcaacgcact
    25441 tatttagtgc atccatctgc tatctccagc tgattaagta aattttttgt atccacatca
    25501 tcacacaatc gttacataaa gattgttttt tcatcaggtt ttacgctaaa taatcactgt
    25561 gttgagtgca caattttagc gcaccagatt ggtgccccag aatggtgcat cttcagggta
    25621 ttgccctata aatcgtgcat cacgtttttg ccgcatctct aaaaatcaat gagttgcaaa
    25681 actggcacga ttttttcata tatgtgaatg tcacgcaggg gatcgtcccg tggatagaaa
    25741 aaaggaaatg ctatgaagtc tgtattaaaa gtttcactgg ctgcactgac cctggttttt
    25801 gcggtttctt ctcatgccgc ggataaaaaa ttagttgtcg cgacggatac cgccttcgtt
    25861 ccgtttgaat ttaaacaggg cgataaatat gtgggctttg acgttgatct gtgggctgcc
    25921 atcgctaaag agctgaagct ggattacgaa ctgaagccga tggatttcag tgggatcatt
    25981 ccggcactgc aaaccaaaaa cgtcgatctg gcgctggcgg gcattaccat caccgacgag
    26041 cgtaaaaaag cgatcgattt ctctgacggc tactacaaaa gcggcctgtt agtgatggtg
    26101 aaagctaaca ataacgatgt gaaaagcgtg aaagatctcg acgggaaagt ggttgctgtg
    26161 aagagcggta ctggctccgt tgattacgcg aaagcaaaca tcaaaactaa agatctgcgt
    26221 cagttcccga acatcgataa cgcctatatg gaactgggca ccaaccgcgc agacgccgtt
    26281 ctgcacgata cgccaaacat tctgtacttc atcaaaaccg ccggtaacgg tcagttcaaa
    26341 gcggtaggtg actctctgga agcgcagcaa tacggtattg cgttcccgaa aggtagcgac
    26401 gagctgcgtg acaaagtcaa cggcgcgttg aaaaccctgc gcgagaacgg aacttacaac
    26461 gaaatctaca aaaaatggtt cggtactgaa ccgaaataat aacgctacac ctgtaaagcg
    26521 cactggcagt tccctctccc ctctggggag aggattaggg tgaggggcgc aaacccgctc
    26581 cggggccatt aattaccctg aatttgatta tttacaccac ggtaacagga acaacatatg
    26641 cagtttgact ggagtgccat ctggcctgcc attccgcttc tgattgaagg tgccaaaatg
    26701 accctgtgga tttcggtcct cggtctggct ggcggtctgg taatcggatt gctggcaggt
    26761 tttgcacgca ccttcggtgg ttggatagcc aaccacgtcg cgctggtctt tattgaagtg
    26821 atccgcggca cacctatcgt cgtccaggtg atgtttatct atttcgccct gccgatggcg
    26881 tttaacgact tacgcatcga cccatttact gcggcggtgg tcaccatcat gatcaactcc
    26941 ggcgcgtaca ttgcggaaat cacgcgtggt gcggtgctgt ctattcacaa aggttttcgt
    27001 gaagcaggac tggcgctcgg tctttcacgt tgggaaacca ttcgctacgt cattttaccg
    27061 ctggcactgc gtcgtatgct gccgccgctg ggtaaccagt ggatcatcag cattaaagac
    27121 acctcgctgt ttattgttat cggcgtggcg gaactgaccc gtcaggggca agaaattatt
    27181 gccggtaact tccgcgccct tgagatctgg agcgccgtgg cggtgttcta tctgattatt
    27241 accctggtgc tgagctttat tctgcgtcgt ctggaaagaa ggatgaaaat cctgtgattg
    27301 aatttaaaaa cgtctccaag cactttggcc caacccaggt gctgcacaat atcgatttga
    27361 acattgccca gggcgaagtc gtggtgatta tcgggccgtc cggttccggt aaatcgaccc
    27421 tgctgcgctg catcaacaaa ctggaagaaa tcacctccgg cgatctgatt gtcgatggcc
    27481 tgaaggttaa cgatccgaaa gttgacgagc gcctgattcg ccaggaagca ggtatggtgt
    27541 tccagcagtt ttacctcttc ccgcatctga cggcgctgga aaacgtcatg tttggtccgc
    27601 tacgcgtgcg tggcgcgaac aaagaagagg cggaaaaact ggcgcgtgag ctgctggcga
    27661 aagtcggtct ggcagaacgt gcacatcact acccttccga actttctggt ggtcaacagc
    27721 agcgtgtggc gattgcccgc gcgctggcgg tgaagccgaa aatgatgctg tttgatgaac
    27781 cgacttccgc tcttgacccg gaactgcgcc atgaagtgct gaaggttatg caggatctgg
    27841 ctgaagaagg gatgacgatg gtgatcgtga cccacgaaat cggttttgcc gagaaagtag
    27901 cttcgcggct gatctttatc gacaaaggcc ggattgcgga agatggcaat ccgcaggtgt
    27961 tgatcaagaa cccgccgagc cagcgcttgc aggaattttt gcagcacgtc tcttaataag
    28021 acacattgcc tgatgcgcta cgcttatcag gcctacagga tatctggcaa cttattaaaa
    28081 ttgcatgaac ttgtaggacg gataaggcgt tcacgccgca tccggcaaaa aagcccgcac
    28141 gttgtcagca atctgcttaa tatcccttcc tccctttcac ccgaaaggga ggcacaccag
    28201 attcctctca tttaaaatcg cccc
//
LOCUS       DADMJB010000035        27850 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.035, whole genome shotgun sequence.
ACCESSION   DADMJB010000035 DADMJB010000000
VERSION     DADMJB010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27850
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.035"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..527
                     /locus_tag="JN078_001387"
     CDS             <1..527
                     /locus_tag="JN078_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4049 domain-containing protein"
                     /protein_id="HAY9040643.1"
                     /translation="KYKIMANHHGIIFDEQRKRYIIGSITVSIDEMTNALDPVELAEI
                     INKKHHAVINGKKFKNSRAISCRSFNRYFSVSTDYRPKLEALLACSQMLGINQVVAHN
                     GNGGRECIGETGTVLGLNARDSKHAGRMFSMHNCQINPGAGPEITTPWKSYQHEKNRN
                     GLMPLIRRRTMLQL"
     gene            893..1960
                     /locus_tag="JN078_001388"
     CDS             893..1960
                     /locus_tag="JN078_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HAY9040644.1"
                     /translation="MDKSKRHLAWWVVGALAVAAVVAWWLLRPAGVPEGFAVSNGRIE
                     ATEVDIASKIAGRIDTILVKEGQFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVA
                     AAQALLEQRQSETRAAQSLVNQRQAELDSVAKRHMRSRSLAQRGAISAQQLDDDRAAA
                     ESARAALESAKAQVSASKAAIEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPR
                     DGRVQYRVAEPGEVLAAGGRVLNMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAP
                     DLRIPATISFVASVAQFTPKTVETSDERLKLMFRVKARIPPELLQQHLEYVKTGLPGV
                     AWVRVNEELPWPDDLVVRLPQ"
     gene            1957..4692
                     /gene="rbbA"
                     /locus_tag="JN078_001389"
     CDS             1957..4692
                     /gene="rbbA"
                     /locus_tag="JN078_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated ATPase/putative transporter
                     RbbA"
                     /protein_id="HAY9040645.1"
                     /translation="MTHLELVPVPPVAQLAGVSQHYGKTVALNNITLDIPARCMVGLI
                     GPDGVGKSSLLSLISGARVIEQGNVMVLGGDMRDPKHRRDVCPRIAWMPQGLGKNLYH
                     TLSVYENVDFFARLFGHDKAEREVRINELLTSTGLAPFRDRPAGKLSGGMKQKLGLCC
                     ALIHDPELLILDEPTTGVDPLSRAQFWDLIDSIRQRQSNMSVLVATAYMEEAERFDWL
                     VAMNAGEVLATGSAEELRQQTQSATLEEAFINLLPQAQRQAHQAVVIPPYQPENAEIA
                     IEARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAW
                     LFGQPVDPKDIDTRRRVGYMSQAFSLYNELTVRQNLELHARLFHIPEAEIPARVAEMS
                     ERFKLNDVEDVLPESLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLM
                     VDLSRQDKVTIFISTHFMNEAERCDRISLMHAGKVLASGTPQELVEKRGAASLEEAFI
                     AYLQEAAGQSNEAEAPPVVHDTTHAPRQGFSLRRLFSYSRREALELRRDPVRSTLALM
                     GTVILMLIMGYGISMDVENLRFAVLDRDQTVSSQAWTLNLSGSRYFIEQPPLTSYDEL
                     DRRMSAGDITVAIEIPPNFGRDIARGTPVELGVWIDGAMPSRAETVKGYVQAMHQSWL
                     QDVASRQSTPASQSGLMNIETRYRYNPDVKSLPAIVPAVIPLLLMMIPSMLSTLSVVR
                     EKELGSIINLYVTPTTRSEFLLGKQLPYIALGMLNFFLLCGLSVFVFGVPHKGSFLTL
                     TLAALLYIIIATGMGLLISTFMKSQIAAIFGTAIITLIPATQFSGMIDPVASLEGPGR
                     WIGEVYPTSHFLTIARGTFSKALDLTDMWQLFIPLLIAIPLVMGLSILLLKKQEG"
     gene            4692..5816
                     /locus_tag="JN078_001390"
     CDS             4692..5816
                     /locus_tag="JN078_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709253.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-2 transporter permease"
                     /protein_id="HAY9040646.1"
                     /translation="MRHLRNIFNLGIKELRSLLGDKAMLTLIVFSFTVSVYSSATVTP
                     GSLNLAPIAIADMDQSQLSNRIVNSFYRPWFLPPEMITADEMDAGLDAGRYTFAINIP
                     PNFQRDVLAGRQPDIQVNVDATRMSQAFTGNGYIQNIINGEVNSFVARYRDNSEPLVS
                     LETRMRFNPNLDPAWFGGVMAIINNITMLAIVLTGSALIREREHGTVEHLLVMPITPF
                     EIMMAKIWSMGLVVLVVSGLSLVLMVKGVLGVPIEGSIPLFMLGVALSLFATTSIGIF
                     MGTIARSMPQLGLLVILVLLPLQMLSGGSTPRESMPQMVQDIMLTMPTTHFVSLAQAI
                     LYRGAGFEIVWPQFLTLMAIGGAFFTIALLRFRKTIGTMA"
     gene            5889..6164
                     /locus_tag="JN078_001391"
     CDS             5889..6164
                     /locus_tag="JN078_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HAY9040647.1"
                     /translation="MRTKVQALRKKQKNTLDQIFKTPVPQGIKWSDIESLVKALGGEI
                     KEGRGSRCKFILNMSVACFHRPHPSPDTDKGAVESVRDWLLSIGVKP"
     gene            6161..6520
                     /locus_tag="JN078_001392"
     CDS             6161..6520
                     /locus_tag="JN078_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HAY9040648.1"
                     /translation="MIKLKTPNSMEIAGQPAVITYVPELNAFRGKFLGLSGYCDFVSD
                     SIQGLQKEGELSLLEYLEDCKAAGIEPYARTEKIKTFTLRYPESLSERLNNAAAQQQV
                     SVNTYIIETLNERLNHL"
     gene            complement(6640..7041)
                     /gene="nikR"
                     /locus_tag="JN078_001393"
     CDS             complement(6640..7041)
                     /gene="nikR"
                     /locus_tag="JN078_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-responsive transcriptional regulator
                     NikR"
                     /protein_id="HAY9040649.1"
                     /translation="MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEA
                     TQQHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLK
                     GDMGDVQHFADDVIAQRGVRHGHLQCLPKED"
     gene            complement(7047..7853)
                     /gene="nikE"
                     /locus_tag="JN078_001394"
     CDS             complement(7047..7853)
                     /gene="nikE"
                     /locus_tag="JN078_001394"
                     /EC_number="7.2.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel import ATP-binding protein NikE"
                     /protein_id="HAY9040650.1"
                     /translation="MTLLNVSGLSHHYAHGGFSGKHQHQAVLNNVSLTLKSGETVALL
                     GRSGCGKSTLARLLVGLESPSQGNISWRGESLAKLNRAQRKAFRRDIQMVFQDSISAV
                     NPRKTVREILREPMRHLLSLKKSEQLARASEMLKAVDLDDSVLDKRPPQLSGGQLQRV
                     CLARALAVEPKLLILDETVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERF
                     CQRVMVMDNGQIVETQAVGDKLTFSSDAGRVLQNAVLPAFPVRRRATEKV"
     gene            complement(7850..8614)
                     /gene="nikD"
                     /locus_tag="JN078_001395"
     CDS             complement(7850..8614)
                     /gene="nikD"
                     /locus_tag="JN078_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel import ATP-binding protein NikD"
                     /protein_id="HAY9040651.1"
                     /translation="MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSL
                     TCAATLGILPAGVRQTAGEILADGKAVYPCALRGIKIATIMQNPRSAFNPLHTMHTHA
                     RETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
                     FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGK
                     IVEQGDVETLFNAPKHTVTRSLVSAHLALYGMELAS"
     gene            complement(8614..9447)
                     /gene="nikC"
                     /locus_tag="JN078_001396"
     CDS             complement(8614..9447)
                     /gene="nikC"
                     /locus_tag="JN078_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter permease subunit NikC"
                     /protein_id="HAY9040652.1"
                     /translation="MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSH
                     LLSPDAQHWLGTDHLGRDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGR
                     VDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISL
                     RQREFVLASRLSGAGHVRVFVDHLAGAVIPSLLVLATLDIGHMMLHVSGMSFLGLGVT
                     APTAEWGVMINDARQYIWTQPLQMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHA
                     H"
     gene            complement(9444..10388)
                     /gene="nikB"
                     /locus_tag="JN078_001397"
     CDS             complement(9444..10388)
                     /gene="nikB"
                     /locus_tag="JN078_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter permease subunit NikB"
                     /protein_id="HAY9040653.1"
                     /translation="MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNL
                     PPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATL
                     ELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV
                     YLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLND
                     KQTERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPV
                     IQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEGAHA"
     gene            complement(10388..11962)
                     /gene="nikA"
                     /locus_tag="JN078_001398"
     CDS             complement(10388..11962)
                     /gene="nikA"
                     /locus_tag="JN078_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter, nickel/metallophore
                     periplasmic binding protein"
                     /protein_id="HAY9040654.1"
                     /translation="MLSTLRRTLFALLACASFIVHAAAPDEITTAWPVNVGPLNPHLY
                     TPNQMFAQSMVYEPLVKYQADGSVIPWLAKSWTHSEDGKTWTFTLRDDVKLSNGEPFD
                     AEAAAENFRAVLDNRQRHAWLELANQIVDVKALSKTELQITLKSAYYPFLQELALPRP
                     FRFIAPSQFKNHETMNGIKAPIGTGPWILQESKLNQYDVFVRNENYWGEKPAIKKITF
                     NVIPDPTTRAVAFETGDIDLLYGNEGLLPLDTFARFSQNPAYHTQLSQPIETVMLALN
                     TAKTPTNELAVREALNYAVNKKSLIDNALYGTQQVADTLFAPSVPYANLGLKPRQYDP
                     QKAKALLEKAGWTLPAGKDIREKNGQPLRIELSFIGTDALSKSMAEIIQADMRQIGAD
                     VSLIGEEESSIYARQRDGRFGMIFHRTWGAPYDPHAFLSSMRVPSHADFQAQQGLADK
                     PLIDKEIGEVLATHDETQRQALYRDILTRLHDEAVYLPISYISMMVVSKPELGNIPYA
                     PIATEIPFEQIKPVKP"
     gene            complement(12073..12660)
                     /gene="acpT"
                     /locus_tag="JN078_001399"
     CDS             complement(12073..12660)
                     /gene="acpT"
                     /locus_tag="JN078_001399"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase AcpT"
                     /protein_id="HAY9040655.1"
                     /translation="MYRIVLGKVSTLSAAPLPPGLREQAPQGPRRERWLAGRALLSHT
                     LSPLPEIIYGEQGKPAFAPETPLWFNLSHSGDDIALLLSDEGEVGCDIEVIRPRANWR
                     WLANAVFSLGEHAEMDAVHPDQQLEMFWRIWTRKEAIVKQRGGSAWQIVSVDSTYHSS
                     LSVSHCQLENLSLAICTPTPFTLTADSVQWIDSVN"
     gene            complement(12715..13751)
                     /locus_tag="JN078_001400"
                     /pseudo
     CDS             complement(12715..13751)
                     /locus_tag="JN078_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709244.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
     gene            13883..15100
                     /locus_tag="JN078_001401"
     CDS             13883..15100
                     /locus_tag="JN078_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417930.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9040656.1"
                     /translation="MPEPVAEPALNGLRLNLRIVSIVMFNFASYLTIGLPLAVLPGYV
                     HDVMGFSAFWAGLVISLQYFATLLSRPHAGRYADLLGPKKIVVFGLCGCFLSGLGYLT
                     AGLTASLPVISLLLLCLGRVILGIGQSFAGTGSTLWGVGVVGSLHIGRVISWNGIVTY
                     GAMAMGAPLGVVFYHWGGLQALALIIMGVALVAILLAIPRPTVKASKGKPLPFRAVLG
                     RVWLYGMALALASAGFGVIATFITLFYDAKSWDGAAFALTLFSCAFVGTRLLFPNGIN
                     RIGGLNVAMICFSVEIIGLLLVGVATMPWMAKIGVLLAGAGFSLVFPALGVVAVKAVP
                     QQNQGAALATYTVFMDLSLGVTGPLAGLVMSWAGVPVIYLAAAGLVAIALLLTWRLKK
                     RPPEHVPEAASSS"
     gene            complement(15104..15661)
                     /gene="dcrB"
                     /locus_tag="JN078_001402"
     CDS             complement(15104..15661)
                     /gene="dcrB"
                     /locus_tag="JN078_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417929.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage sensitivity protein DcrB"
                     /protein_id="HAY9040657.1"
                     /translation="MRNLVKYVGIGLLVMGLAACDDKDTNATAQGSVAENNATGNPVN
                     LLDGKLSFSLPADMTDQSGKLGTQANNMHVWSDATGQKAVIVIMGDDPKEDLAVLAKR
                     LEDQQRSRDPQLQVVTNKAIELKGHKMQQLDSIISAKGQTAYSSVILGNVGNQLLTMQ
                     ITLPADDQQKAQTTAENIINTLVIQ"
     gene            complement(15734..16399)
                     /locus_tag="JN078_001403"
     CDS             complement(15734..16399)
                     /locus_tag="JN078_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HAY9040658.1"
                     /translation="MNVFSQTQRYKALFWLSLFHLLVITSSNYLVQLPVSILGFHTTW
                     GAFSFPFIFLATDLTVRIFGAPLARRIIFAVMIPALLISYVISSLFYMGSWQGFGALA
                     HFNLFVARIATASFMAYALGQILDVHVFNRLRQSRRWWLAPTASTLFGNVSDTLAFFF
                     IAFWRSPDAFMAEHWMEIALVDYCFKVLISIVFFLPMYGVLLNMLLKRLADKSEINAL
                     QAS"
     gene            16620..16865
                     /gene="tusA"
                     /locus_tag="JN078_001404"
     CDS             16620..16865
                     /gene="tusA"
                     /locus_tag="JN078_001404"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA"
                     /protein_id="HAY9040659.1"
                     /translation="MTDLFSSPDHTLDALGLRCPEPVMMVRKTVRNMQPGETLLIIAD
                     DPATTRDIPGFCTFMEHELVAKETDGLPYRYLIRKGG"
     gene            complement(16967..19165)
                     /gene="zntA"
                     /locus_tag="JN078_001405"
     CDS             complement(16967..19165)
                     /gene="zntA"
                     /locus_tag="JN078_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase
                     ZntA"
                     /protein_id="HAY9040660.1"
                     /translation="MSTPDNHGKKAPQFAAFKPLTTVQNANDCCCDGACSSSPTLSEN
                     VSGTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVES
                     AVQKAGYSLRDEQAADEPQASRLKENLPLITLIVMMAISWGLEQFNHPFGQLAFIATT
                     LVGLYPIAHQALRLIKSGSYFAIETLMSVAAIGALFIGATAEAAMVLLLFLIGERLEG
                     WAASRARQGVSALMALKPETATRLRNGEREEVAINSLRPGDVIEVAAGGRLPADGKLL
                     SPFASFDESALTGESIPVERATGDKVPAGATSVDRLVTLEVLSEPGASAIDRILKLIE
                     EAEERRAPIERFIDRFSRIYTPAIMAVALLVTLVPPLLFAASWQEWIYKGLTLLLIGC
                     PCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTQVAFDKTGTLTVGKPRVTA
                     IHPATGISESELLTLAAAVEQSATHPLAQAIVREAQVAALAIPAAESQRALVGSGIEA
                     QVNGERVLICAAGKHPADAFAGLINELESAGQTVVLVVRNDDVLGIIALQDTLRADAA
                     TAISELNALGVKGVILTGDNPRAAAAIAGELGLEFKAGLLPEYKVKAVTELNQHAPLA
                     MVGDGINDAPAMKAAAIGIAMGSGTDVALETADAALTHNHLRGLVQMIELARATHANI
                     RQNITIALGLKGIFLVTTLLGMTGLWLAVLADTGATVLVTANALRLLRRR"
     gene            complement(19239..19865)
                     /locus_tag="JN078_001406"
     CDS             complement(19239..19865)
                     /locus_tag="JN078_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000964717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysoplasmalogenase"
                     /protein_id="HAY9040661.1"
                     /translation="MLWSFIAVCLSAWLSVDASYRGPTWQRWVFKPLTLLLLLLLAWQ
                     APMFDAISYLVLAGLCASLLGDALTLLPRQRLMYAIGAFFLSHLLYTIYFASQMTLSF
                     FWPLPLVLLVLGALLLAIIWTRLEEYRWPICTFIGMTLVMVWLAGELWFFRPTAPALS
                     AFVGASLLFISNFVWLGSHYRRRFRADNAIAAACYFAGHFLIVRSLYF"
     gene            20006..20365
                     /locus_tag="JN078_001407"
     CDS             20006..20365
                     /locus_tag="JN078_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2500 domain-containing protein"
                     /protein_id="HAY9040662.1"
                     /translation="MSKPPLFFIVIIGLIVVAASFRFMQQRREKADNDMAPLQQKLVV
                     VSNKREKPINDRRSRQQEVTPAGTSMRYEASFKPQSGGMEQTFRLDAQQYHALTVGDK
                     GTLSYKGTRFVSFVGEQ"
     gene            complement(20368..20637)
                     /locus_tag="JN078_001408"
     CDS             complement(20368..20637)
                     /locus_tag="JN078_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1145 family protein"
                     /protein_id="HAY9040663.1"
                     /translation="MLINIGRLLMLCVWGFLILNLVHPFPRPLNIFVNVALIFTVLMH
                     GMQLALLKSTLPKDGPQMTTAEKVRIFLFGVFELLVWQKKFKVKK"
     gene            complement(20627..21223)
                     /gene="rsmD"
                     /locus_tag="JN078_001409"
     CDS             complement(20627..21223)
                     /gene="rsmD"
                     /locus_tag="JN078_001409"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase"
                     /protein_id="HAY9040664.1"
                     /translation="MKKPNHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLF
                     NWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGN
                     ARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEV
                     ENGLPTVPANWSLHREKVAGQVAYRLYQREAQGESDAD"
     gene            21373..22866
                     /gene="ftsY"
                     /locus_tag="JN078_001410"
     CDS             21373..22866
                     /gene="ftsY"
                     /locus_tag="JN078_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HAY9040665.1"
                     /translation="MAKEKKRGFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQAQEP
                     AKASEQAVEEQPQAHTEAEAETFAADVVEVTEQVAESEKAQPEAEVVAQPEPVVEETP
                     EPVAIEREELPLPEDVNAEEVSPEEWQAEAETVEIVEAAEEEAAKEEITDEELEAQAL
                     AAEAAEEAVMVVPPVEEQPVEEIAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLF
                     RGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMG
                     EILAKVDEPLNVEGKTPFVILMVGVNGVGKTTTIGKLARQFELQGKSVMLAAGDTFRA
                     AAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSH
                     LMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDG
                     TAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED"
     gene            22869..23537
                     /gene="ftsE"
                     /locus_tag="JN078_001411"
     CDS             22869..23537
                     /gene="ftsE"
                     /locus_tag="JN078_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HAY9040666.1"
                     /translation="MIRFEHVSKAYLGGRQALQGVTFHMQPGEMAFLTGHSGAGKSTL
                     LKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI
                     PLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL
                     ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDINLISRRSYRMLTLSDGHLHGG
                     VGHE"
     gene            23530..24588
                     /gene="ftsX"
                     /locus_tag="JN078_001412"
     CDS             23530..24588
                     /gene="ftsX"
                     /locus_tag="JN078_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsX"
                     /protein_id="HAY9040667.1"
                     /translation="MNKRDAINHIRQFGGRLDRFRKSVGGSGDGGRNAPKRAKSSPKP
                     VNRKTNVFNEQVRYAFHGALQDLKSKPFATFLTVMVIAISLTLPSVCYMVYKNVNQAA
                     TQYYPSPQITVYLQKTLDDDAAAGVVAQLQAEQGVEKVNYLSREDALGEFRNWSGFGG
                     ALDMLEENPLPAVAVVIPKLDFQGTESLNTLRDRITQINGIDEVRMDDSWFARLAALT
                     GLVGRVSAMIGVLMVAAVFLVIGNSVRLSIFARRDSINVQKLIGATDGFILRPFLYGG
                     ALLGFSGALLSLILSEILVLRLSSAVAEVAQVFGTNFDINGLSFDECLLLLLVCSMIG
                     WVAAWLATVQHLRHFTPE"
     gene            24833..25687
                     /gene="rpoH"
                     /locus_tag="JN078_001413"
     CDS             24833..25687
                     /gene="rpoH"
                     /locus_tag="JN078_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007899894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HAY9040668.1"
                     /translation="MTDKMQSLALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYH
                     GDLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLV
                     SFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARE
                     LGVTSKDVREMESRMAAQDMTFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWE
                     EQAANRLTDAMQGLDERSQDIIRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMK
                     KLRAAIEA"
     gene            25958..27061
                     /locus_tag="JN078_001414"
     CDS             25958..27061
                     /locus_tag="JN078_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HAY9040669.1"
                     /translation="MNIKGKALLAGCIALAFSNMALAEDIKVAVVGAMSGPVAQYGDQ
                     EFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCS
                     SSTQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVK
                     PQRIAIVHDKQQYGEGLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENID
                     FVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYD
                     QVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQSDDPAEIAKYLKANSVDT
                     VMGPLTWDEKGDLKGFEFGVFDWHANGTATDAK"
     gene            complement(27260..27643)
                     /gene="panM"
                     /locus_tag="JN078_001415"
     CDS             complement(27260..27643)
                     /gene="panM"
                     /locus_tag="JN078_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase autocleavage activator
                     PanM"
                     /protein_id="HAY9040670.1"
                     /translation="MKLTIIRLENFSDQDRIDLQKIWPEYSPSSLQVDDNHRIYAARF
                     NERLLAAVRVTLSGTEGALDSLRVREVTRRRGVGQYLLEEVLRNNPGVSCWWMADAGV
                     EDRGVMTAFMQALGFTAQQGGWEKR"
BASE COUNT         6593 a         7227 c         7741 g         6289 t
ORIGIN      
        1 ccaaatacaa aataatggca aatcatcatg ggataatttt tgatgagcag cgaaaacgtt
       61 acattatagg atcgataaca gtctctattg atgaaatgac caatgctctc gatccggtcg
      121 aattagcgga aattattaat aaaaagcacc atgctgtaat taatggcaaa aagtttaaaa
      181 atagccgggc tatctcttgt cgatccttta atcgttattt ttctgtttcg acagattaca
      241 gacctaaact tgaagcacta ttagcatgct cacaaatgtt aggtataaat caagttgttg
      301 cacataacgg taatggtgga agagaatgta taggtgaaac ggggacagtt ttaggtctta
      361 acgcccgtga cagtaaacat gctggaagaa tgttcagcat gcataattgc caaattaacc
      421 ctggtgcagg gcctgagata accactccct ggaagtctta ccagcatgaa aaaaacagaa
      481 atggacttat gcctttgatt agaaggcgca caatgttaca gctctgaacc atagacaaca
      541 tgaatattaa tgttactatc tggttgagac tgttgataaa acgtaaaaag gaatgctctg
      601 ttcctgcaac tgaacaggcg tgaaacgcga tccaacagga tggataccgt tttgtcagcc
      661 agttttatag atcacactta tgagtatgcg tgtttcattt acggccagga atgctgatga
      721 tgacaacatt actacccgtt ttcactaagc cttccccgtt ggcgctcaat gctctgcgcg
      781 ctggtcgtat ttgtcgtttc cttcttatcc cggatggaag aatccgctga acgtcgttcg
      841 gcggcagttg taacacgcgt cgtttgctta cagggattat ggcgggccga ttatggataa
      901 gagtaagcgc catctggcgt ggtgggttgt cggggcactg gcggtggctg ccgtcgtggc
      961 gtggtggctg ttgcgcccgg cgggtgtgcc ggaaggcttt gctgtcagca atgggcgcat
     1021 tgaagcgacg gaagtggata tcgccagcaa aattgccggg cgtatcgaca ccattctggt
     1081 gaaagaaggc cagtttgttc gcgaaggtga agtgctggcg aagatggata ctcgtgtgtt
     1141 gcaggaacag cgactggaag ccatcgcgca aatcaaagag gcacaaagcg ccgttgccgc
     1201 cgcgcaggct ttgctggagc aacgacaaag cgaaactcgc gccgcgcagt cgctggttaa
     1261 tcaacgccag gcagaactgg actccgtagc aaaacgtcat atgcgttccc gttcactggc
     1321 ccaacgaggg gctatttctg cgcaacagct ggatgacgac cgcgccgccg ctgagagcgc
     1381 ccgagctgcg ctggaatcgg caaaagctca ggtttctgct tctaaagccg ctatagaggc
     1441 ggcacgtacc aatatcattc aggcgcaaac ccgcgtcgaa gcggcacaag ccactgaacg
     1501 gcgcattgcc gcagatatcg atgacagcga actgaaagcc ccgcgtgacg gacgcgtgca
     1561 gtatcgggtt gccgagccag gggaagtgct ggcggcaggc ggtcgggtgc tgaatatggt
     1621 cgatctcagc gacgtctata tgactttctt cctgccaacc gaacaggcgg gcacgctaaa
     1681 actgggcggt gaagcacggc tgatcctcga tgccgcgcca gatctgcgta ttccggcgac
     1741 catcagtttt gtcgccagcg tcgcccagtt cacgccaaaa accgtcgaaa ccagcgatga
     1801 acggctgaaa ctgatgttcc gcgtcaaagc gcgtatccca ccggaattac tccagcagca
     1861 tctggaatat gtcaaaacgg gcttgccggg cgtagcgtgg gtgcgggtga atgaagaact
     1921 tccgtggcct gacgacctgg tggtgaggtt gccgcaatga cgcatctgga actggttccc
     1981 gtcccgcctg tcgcgcaact ggcgggcgtg agccagcatt atggaaaaac cgttgcgctg
     2041 aacaatatca ctctcgatat tccggcccgc tgtatggtcg ggctgattgg cccggacggc
     2101 gtcgggaagt cgagtttgtt gtcgttgatt tccggtgctc gtgtcattga gcagggcaat
     2161 gtgatggtgc tgggcggcga tatgcgcgac ccgaagcatc gccgcgacgt ctgcccgcgc
     2221 atcgcctgga tgccgcaggg gctgggcaaa aacctctacc acaccttgtc ggtgtatgaa
     2281 aacgtcgatt ttttcgcccg cctgttcggt cacgacaaag cggagcggga agtgcgaatt
     2341 aatgagctgc tgaccagcac ggggttagca ccgtttcgcg atcgtccggc agggaaactc
     2401 tccggcggga tgaagcaaaa acttgggctg tgctgcgcgt taatccacga cccggaactg
     2461 ttgatccttg atgagccaac aacgggggtt gacccgctct cccgcgccca gttctgggat
     2521 ctgatcgaca gtattcgcca gcggcagagc aatatgagcg tgctggtcgc caccgcctat
     2581 atggaagagg ccgaacgctt cgactggctg gtagcgatga atgccggaga agtgctggca
     2641 accggcagcg ccgaagagct gcggcagcaa acgcaaagcg ccacgctgga agaagcattt
     2701 attaatctgt taccgcaagc gcaacgccag gcgcatcagg cggtagtgat cccaccgtat
     2761 caacctgaaa acgcagagat tgccatcgaa gcgcgcgatc tgaccatgcg ttttggttcc
     2821 ttcgttgccg ttgatcacgt caatttccgc attccacgcg gggagatttt tggattcctt
     2881 ggttcgaacg gctgcggtaa atccaccacc atgaaaatgc ttaccggact gctgcccgcc
     2941 agcgaaggtg aggcgtggct atttgggcaa ccggttgatc caaaagatat cgatacccgc
     3001 cgtcgtgtgg gctatatgtc gcaggcgttt tcgctctata acgaactcac cgtgcggcaa
     3061 aacctggagt tacatgcccg tttgtttcac atcccggaag cggaaattcc cgcgcgagtg
     3121 gctgaaatga gcgagcgttt taagctcaac gacgttgaag atgttctgcc ggagtcattg
     3181 ccgctcggca ttcgccagcg gctttcgctg gcggtggcgg tgattcatcg cccggagatg
     3241 ttaatcctcg atgagcctac ttctggtgtc gatccggtgg cgagggatat gttctggcag
     3301 ttgatggtcg atctctcgcg ccaggacaaa gtgactatct tcatctccac ccactttatg
     3361 aacgaagcgg aacgttgcga ccgcatctca ctgatgcacg ccggaaaagt gcttgccagc
     3421 ggtacaccgc aggaactggt tgagaaacgc ggagccgcca gtctggaaga ggcatttatc
     3481 gcctatttgc aggaagcggc agggcagagc aacgaagccg aagcgccgcc cgtggtacac
     3541 gacaccaccc acgcgccgcg tcagggattt agcctgcgcc gtctgtttag ctacagccgc
     3601 cgcgaagcgc tggaactgcg acgcgatcca gtacgttcga cgctggcgct gatgggaacg
     3661 gtgatcctga tgctgataat gggttacggc atcagtatgg atgtggaaaa cctgcgcttt
     3721 gcggtgctcg accgcgacca gaccgtcagt agccaggcgt ggacactcaa cctctccggt
     3781 tcccgttact ttatcgaaca gccgccgctc accagttatg acgagcttga tcgtcggatg
     3841 agtgcgggcg atatcacggt ggcgattgag atcccgccca atttcgggcg cgatatcgcg
     3901 cgtggtacgc ctgtggaact cggcgtctgg atcgacggag cgatgcccag tcgtgccgaa
     3961 acggtaaaag gttacgtgca ggcaatgcac cagagttggc ttcaggatgt ggcgagccga
     4021 caatcgacac ccgccagcca aagcgggctg atgaacattg agacgcgtta tcgctataac
     4081 ccggacgtaa aaagcctgcc agcaattgtt ccggcggtga tcccgcttct gctgatgatg
     4141 atcccgtcaa tgctaagcac ccttagcgtg gtgcgggaaa aagagcttgg gtcgattatc
     4201 aacctttacg tgacccccac cacgcgtagt gaatttttgc ttggtaaaca gttgccatac
     4261 atcgcgctgg ggatgctgaa ctttttcctg ctctgcggcc tgtcggtgtt tgtgtttggc
     4321 gtaccgcata aaggcagttt cctgacgctc accctggcgg cgctgctgta tatcatcatt
     4381 gccaccggaa tggggctgct gatctccacc tttatgaaaa gccagattgc cgccattttc
     4441 ggaacggcga ttatcacgtt gatcccggcg acacagtttt ccgggatgat cgatccggta
     4501 gcttcgctgg aagggcctgg acgttggatc ggcgaggttt acccgaccag tcattttctg
     4561 actatcgccc gcgggacgtt ctcgaaagcg ctggatctga ctgatatgtg gcaacttttt
     4621 atcccgttgc tgatagccat cccgctggtg atgggcttaa gtatcctgct gctgaaaaaa
     4681 caggagggat gatgcgccat ttacgcaata tttttaatct gggtatcaaa gagttgcgca
     4741 gtctgctcgg tgataaagcg atgctgacgc tgattgtctt ctcgtttacg gtgtcggtgt
     4801 attcgtcagc gaccgttacg ccaggatcgt tgaacctcgc gccgatcgcc attgccgata
     4861 tggatcaatc gcagttatcg aaccggatcg ttaacagctt ctatcgtccg tggtttttgc
     4921 caccggagat gatcaccgcc gatgagatgg atgccggact ggacgccgga cgctatacct
     4981 tcgcgataaa tattccgcct aattttcagc gtgatgtcct cgccggacgc cagccggata
     5041 ttcaggtgaa cgtcgatgcc acgcgcatga gccaggcatt taccggcaat gggtatatcc
     5101 agaatattat caacggtgaa gtgaacagct ttgtcgcgcg ctaccgtgat aacagcgaac
     5161 cgttggtatc gctggaaacc cggatgcgct ttaacccgaa ccttgatccc gcgtggtttg
     5221 gcggggtgat ggcgatcatc aacaacatta ccatgctggc gattgtattg accggatcgg
     5281 cgctgatccg cgagcgtgaa cacggcacgg tggaacactt actggtgatg ccgataacgc
     5341 cgtttgagat catgatggcg aagatctggt cgatggggct ggtggtgctg gtggtatcgg
     5401 gattatcgct ggtgctgatg gtgaaaggtg tactgggcgt accgattgaa ggctcgatcc
     5461 cgctgtttat gctgggcgtg gcgctcagtc tgtttgccac cacgtcaatc ggcattttta
     5521 tggggacgat agcgcgttca atgccgcaac tggggctgct ggtgattctg gtgctgctgc
     5581 cgctgcaaat gctttccggt ggatccacgc cgcgcgaaag tatgccgcag atggtgcagg
     5641 acattatgct gaccatgccg acgacacact ttgttagcct cgcgcaggcc attctctacc
     5701 ggggtgccgg attcgaaatc gtctggccgc agttcctgac gctgatggca attggcggcg
     5761 cgtttttcac cattgcgctg ctgcgattca ggaagacgat tgggacaatg gcgtaaggaa
     5821 gggaaacttg acttcatact gtgatgtcat actattgatg tcataaagtg aagtcataag
     5881 gacatgccat gagaaccaag gtacaggctt tacggaagaa acaaaaaaat acattggatc
     5941 aaatatttaa aactcctgtt cctcaaggga tcaagtggtc tgatatagag tcactggtta
     6001 aagcattagg cggagaaatt aaggaaggaa gaggttcgcg ttgtaagttc atactaaata
     6061 tgagcgttgc gtgtttccat cggcctcatc cgtcgccaga taccgataaa ggcgctgtag
     6121 aaagcgtgcg tgactggtta ctaagtatag gggtaaaacc atgatcaaac tgaagacgcc
     6181 aaactctatg gagattgccg ggcaaccagc tgttattacc tacgtgccag aactgaatgc
     6241 atttcgtggc aaattcctgg gcttgtcagg ttattgtgat tttgtctctg acagcattca
     6301 ggggctgcaa aaagaagggg aactttccct gctagagtat cttgaggatt gtaaagctgc
     6361 gggtattgag ccgtatgcgc gtacagaaaa gattaagacc tttacgttac gctatccaga
     6421 atcgctgagt gaacgcctta ataatgcggc tgcgcagcaa caagtctctg ttaataccta
     6481 tattattgaa acactgaatg agcgtttgaa tcatttataa attttagcgg cgtacattac
     6541 gcagaatatc tgcctttaca ggatctatct atgcaactga acttaatttt ataaattaag
     6601 ttcagttaat atcttttctt tcctcgtttc agaaataact caatcttcct tcggcaagca
     6661 ctgcaaatgc ccatgccgca cgccgcgctg ggcgataacg tcatcggcaa aatgctgcac
     6721 gtcgcccata tcacctttca gcacggcgat ttccagacag tcgtcgtgat tgatatgcac
     6781 atgcagcgtg gcgacggaga gatcgtggtg atggtgctgg gtggagacaa tgcggctggc
     6841 taagtcgcgt ttttcgtgtt catacacata ggagagcacc gcgaaacctt gcgtgccgtg
     6901 ctgctgagtg gcctcctggg ccagggcgct acgcagaata tcgcggatag cttcggaacg
     6961 gttgttataa ccacgacgct ggctcaggct gtccagcgtc tccagtaaat cgtcatcaag
     7021 cgtgatggtg actcgttgca tttgcgttaa accttttctg tggcgcgacg gcgcacgggg
     7081 aatgcgggta ataccgcgtt ttgtagcaca cgtccggcgt cagaggaaaa ggttaattta
     7141 tctcccaccg cctgggtttc gacgatttgt ccgttgtcca tcaccatcac ccgctggcaa
     7201 aagcgttcta caagacgtaa gtcgtgggtg atgaacaggc aggcggtgcc aaactgttgt
     7261 tgcagctttt tcagcaggcg aatgacgccc gcctgtaaca cgagatcaag gttagaaacg
     7321 gtttcatcca gaatcagcaa tttcggttcg accgccagcg cgcgtgccag gcagacgcgc
     7381 tggagctggc cgccgcttaa ctgcggtggg cgtttgtcga gaacgctgtc atcgagatcg
     7441 accgccttca gcatttcgct ggcgcgcgcc agttgttcgg attttttcag tgatagcagg
     7501 tggcgcatcg gttcacgcag gatctcgcgc acggttttgc gcggattcac ggcactgatg
     7561 gagtcctgaa acaccatctg aatatcacgg cggaaggctt tacgttgggc gcgattaagt
     7621 ttcgccagcg attcgccgcg ccagctaata ttcccttgtg agggagactc taagcctacc
     7681 agcagccgcg cgagggtgct ttttccgcag ccgctgcgtc ccagcagggc gacggtttcg
     7741 ccgcttttca gggtcaggga aacgttattc agcaccgcct gatgttgatg ttttccgcta
     7801 aatccaccgt gggcatagtg atgggaaagg ccgctgacgt taagtaaggt catgatgcca
     7861 gctccatacc gtagagggcg agatgagcgg aaaccaggct gcgcgtcacc gtatgtttgg
     7921 gggcgttaaa cagcgtttct acatcgccct gttcgacaat tttaccttgt gacatcaccg
     7981 ccacgtcatc cgccagacgc gccacaacgc ccatatcatg ggtgaccagc agcattcccg
     8041 gcgcttgttt ttgcataatg ctttccagca gatcgaggat gcgcgcctgt gctaccacgt
     8101 cgaggtcggt ggtcggttca tcggcgatga taaacggtga ttcacacagc accgccatcg
     8161 caatcatcat gcgctgcaac atgccgccgc tcatctcgaa cgggtacagc ttcagcacgc
     8221 gcgcggcgtt ttccagcccc accgcttcta tggcagcggt aagcgtagcg tcatcggcgg
     8281 gtttccctaa cgccaggcag gtttcccgcg cgtgggtgtg catggtgtgt agcggattaa
     8341 aggcgctgcg cgggttctgc atgatggtgg caattttgat gccgcgcagg gcgcagggat
     8401 aaaccgcttt gccatcggct aaaatttccc ccgccgtctg gcgaacgcca gcgggcaaaa
     8461 tgcccagcgt cgcggcgcag gttaatgatt tcccgctgcc gctaccgccg actaacgcca
     8521 gcacgcgccc gcgttgcagg gttaacgata caccgtgtac cagcggctgc gcggcctgta
     8581 gcgcgatatt acgtagttca atctgttgcg gcattagtgt gcgtgctccg tcaccagatg
     8641 agggtccaga tgatcgcgca gtgcgtcacc caccaggtta aaggccatca cgctgataaa
     8701 cagcgccagc cccggccaga acatttgcag cggctgggtc cagatatact ggcgcgcgtc
     8761 gttaatcatc acgccccatt cggcggtcgg cgcggtcaca ccgaggccaa ggaaagacat
     8821 ccccgagacg tgcagcatca tatggccgat atccagcgtt gccagcacca gcagcgaagg
     8881 gatcaccgcg cctgccagat gatcgacaaa cactcgcaca tggcccgcac cggaaagccg
     8941 tgacgccagc acaaactcgc gttggcgtag tgaaatcacc aggctgcgca ccatgcgtgc
     9001 ataccacgcc cagtgcgaca gggcgatggc gataattacg ttggtcagcc cggtgccgag
     9061 cacgccaacc ataaagaacg acagaatcga ggtcgggaag gtcataaaca tatcggcgac
     9121 gcgcatggtg gcctgatcaa cgcgcccgcc aatcaacccg gcgctgccgc caataaccag
     9181 ccctaatgtc agcaccagca gcaggcaggc cattaccgaa ccgagcgaca cgcgggtcgc
     9241 tgccatcagc cgcgagaaaa tatcgcgacc taagtgatcg gtgcccagcc agtgctgcgc
     9301 atccggcgaa agcaggtgcg acggcaaatc aatcgcctgg gggtcatacg gcagccacca
     9361 ctggctggtg agcgcaatca gcgccagcag ggcgataatg atcagcgcca ggcgtaccga
     9421 ccagcgggaa gagaggaaaa agttcacgcg tgcgctcctt catgacgacg aatgcgcggg
     9481 tccagcgcgg cgttgagcaa atcgacaatc aaattacaga ccacaaaaac caccaccatc
     9541 atcagcgtaa agcactgaat caccggatag tcacggttaa aaatcgccga caccgcatag
     9601 cgcccgacgc caggccaggc aaagatgttt tcgataatca tcgtcccgcc aatcaattcg
     9661 ccaatgtgca tccccacggc ggtgatcatc ggcagcgagg cattgcgcag aatatggcgg
     9721 cgttcggtct gtttgtcatt caggccgcgt agccgcgccc aggtgacgtg acgctgaccg
     9781 gcgacgtcca gcatactggc gcgcagcagt cgcgcgttaa tcgccagcga cataaaggcg
     9841 atggaaaccg caggcaaaat gatgtgctgc cagccgccgt agcccatcgc gggtagccat
     9901 tgcagataca ccgaaaacgc catcactagc aaaaatgcca gccagaagtt gggcatcgac
     9961 acgccaagaa acgcgataaa gcgcacggcg aaatccggca aacgatcgcg gtggcgcgcc
    10021 gcccagatac cgagcggtac ggaagtgagc agaattaata ccagcgccgc acctgcaagt
    10081 tccagcgtgg cgggcaggaa gttcagcata tcgtccagca ccgggcgttg gctggcgaat
    10141 gagataccaa agtcaagatg cagcgccttc cacaaccagg tgccgtactg gacgtacagc
    10201 ggctgatcca gtccgagcat ggtgcgggta gaggccagca tctccggcgt cggcggcagg
    10261 ttagacagac gcaaataatc gagcgccggg tcgccggtac cgaggcgcag catcagaaaa
    10321 atgatcaccg aggcggcgag caccatcggg atcagcagca gaaagcggcg taatacgtaa
    10381 cgcaacatta aggtttcacc ggtttaatct gttcgaacgg aatttcggtg gcgatcggcg
    10441 cgtaggggat gttacccagc tccggttttg ataccaccat cattgagatg taactgatag
    10501 gcagataaac cgcctcgtca tgcagacggg tcagaatgtc gcgatacagt gcctgacgtt
    10561 gcgtttcgtc atgggtcgcc agcacttcgc cgatctcttt atcaatcagc ggtttgtcgg
    10621 ctaatccttg ctgtgcctgg aagtcagcgt gcgacggtac gcgcattgaa ctcaggaagg
    10681 cgtgtggatc gtatggcgcg ccccaggtgc ggtggaaaat catgccaaaa cgaccgtcgc
    10741 gctgacgagc atagatactg ctctcttctt cgccaatcag cgagacatct gcgccaatct
    10801 ggcgcatatc agcctgaatg atttccgcca tcgatttgct taacgcatcg gtgccgatga
    10861 acgacagttc aatgcgcagc ggctgaccat ttttctcgcg gatgtctttg cccgcaggca
    10921 gcgtccaacc ggctttttcc agcaacgctt tcgctttctg cggatcgtac tggcgcggtt
    10981 tcaggccgag gttggcgtag ggcacagaag gggcaaacag ggtgtcggcg acctgctggg
    11041 tgccatacaa cgcgttatca atcagcgatt ttttgtttac cgcgtaatta agagcttcac
    11101 gtactgccag ctcattggtg ggggttttgg cggtattaag cgccagcatc acggtttcga
    11161 tcggctgtga cagttgggta tggtaagccg ggttctggct aaagcgggcg aaggtatcga
    11221 gcggtaataa cccttcgttt ccgtacagca ggtcgatatc gccagtttca aacgccaccg
    11281 cgcgggtagt cgggtccggg atgacgttaa aggtgatctt tttaatcgct ggcttttcgc
    11341 cccagtagtt ttcgttacgg acgaagacat cgtactgatt cagtttcgat tcctgcaaaa
    11401 tccacggtcc ggtgccaatc ggcgctttaa ttccgttcat ggtttcatgg tttttaaact
    11461 gcgagggagc gataaaacgg aaaggacggg gcagggccag ttcttgcagg aaaggatagt
    11521 aggcgctttt cagggtaatt tgcagctctg ttttactgag tgctttaaca tcaacaatct
    11581 ggtttgccag ctccagccag gcgtgacgtt gacggttatc gagcactgcg cggaagtttt
    11641 ctgccgccgc ctcggcatcg aacggttcac cgttggataa tttcacgtca tcacgcaggg
    11701 tgaaggtcca ggttttacca tcttctgaat gagtccagct ttttgccagc cacgggatca
    11761 ccgaaccgtc tgcctgatat ttcaccaatg gttcataaac catgctctgg gcgaacatct
    11821 ggttaggcgt gtaaaggtgc gggtttagtg gcccgacatt caccggccag gcggtagtga
    11881 tttcatctgg tgcagcggca tggacgataa aagacgcaca agccagcagc gcaaatagag
    11941 tgcggcggag tgtggagagc atgataaccc caatggatta aaatagatgg cggaaataag
    12001 tatgacgatt ttaagtattc gtcatactga ttacctgttc tggatcaata gatgggcagt
    12061 cgggtgggcg gatcagttaa ctgaatcgat ccattgcaca ctgtcggcgg tgagcgtaaa
    12121 gggggtgggg gtgcagatcg caaggcttaa attttctagc tgacaatggc tgactgacag
    12181 cgaggagtga taggtgctat ctacgctgac gatttgccag gcgctgccgc cacgctgttt
    12241 aacgatggct tctttgcgcg tccagatgcg ccagaacatt tccagttgct gatcaggatg
    12301 cacggcgtcc atttcagcgt gttccccgag gctgaacacg gcgttcgcca gccagcgcca
    12361 gttggcgcgc gggcgaatca cttcgatatc gcagccgact tcgccttcat cgctcaacag
    12421 cagagcgata tcgtcaccgc tatggcttaa gttgaaccat agcggcgttt ccggcgcgaa
    12481 tgcaggtttg ccttgttcgc catagatgat ctccggtagc ggggaaagcg tgtgcgaaag
    12541 caatgcacgc cccgccagcc agcgttcgcg tcgtggacct tgcggtgctt gctcgcgtaa
    12601 acccggtggc agtggagctg cgcttaaggt cgaaactttc cccagaacta tccgatacat
    12661 atcagggcca acgtttaatg gaaaatgaaa gtgcgtatcg tatcacttgt cgcctcatcc
    12721 cggtaaccga cttttcggtc tgcctagccc cagtaaaatc gccagtttgc taccgccttt
    12781 ggtggtttcc atccagattt tacacacgct ggttaatggc accgaaagta gcatccctac
    12841 cgggccgagc agccatcccc aaattaacaa tgaaagaaat accaccatgg tggacatccc
    12901 caggcgatgg cccatcatcc gtggtcgatg accatatgga ccactaaaaa caatgcgccg
    12961 accagaatac atgcgtaaac accattaaac agcagcacct gaatcattgg cggtacggcg
    13021 gaaattaccg cgccgatatt gggcacgtag ttgagcaaaa acgccagtac tgcccacatc
    13081 agcgcaaact gtacgcccat tagcgccagc cccagccaga cgatgacacc tgtccataaa
    13141 ctgagtagcg tctttaacgc cagataatgc gaaacgcctt taagtgcgcg gtgtaatcct
    13201 gcgatgtgaa tctgtgggtt attcagcgca aaacgcattt tgtaagggac gtggcgcact
    13261 tcaaacagca taaaaactac ggtcatcacc agcaaaagca cgctcgccat tgccccggaa
    13321 agcccgatca ttagcgctgt ggtgaaggta accacttttt ccgagtccat ccgctgcagc
    13381 attcgctccg gcgacatatg caaattaaga aaaggcaaca tctcctgcaa tttaaaaagt
    13441 ttgcgcgtca gctccttatt aaacttcggc agcatagaga taaattcgtt aaacgatgcc
    13501 gccagtacgc cgactagcgc ggttagtgcg atcagcatca ccaccactac aatcgtaatg
    13561 gtaacggggc gttgtactcc ccgacgaata aaccaggtaa cgagcgggtt gaggacgatg
    13621 gcaaaaaaca gcgccagtaa cagctgcaca atgatatctg ccgctgcgtg aatgcccgcg
    13681 aggatcacta ccagcgaggc caacttgagc agaatgtgca tgcccgtttt atcgggttga
    13741 ggggtttcca ttggggcttc cttgtgactt tttgtgttaa gtgtagcggg agtcacgtca
    13801 gcaatattct gattcttact gctgattttc acgtcagcac gtggtaaaaa tgaaacactg
    13861 ttgtaaaaat gtggtgatcc tcatgcccga acccgtagcc gaacccgcgc taaacggatt
    13921 gcgcctgaat ttgcgcattg tctccattgt catgtttaac ttcgccagct acctcaccat
    13981 cgggttgccg ctcgctgtat taccgggcta tgtccatgat gtgatgggct ttagcgcttt
    14041 ctgggcagga ttggttatca gcctgcaata tttcgccacc ttgctgagcc gtcctcatgc
    14101 cggacgttac gccgatttgc tgggccccaa aaagattgtc gtcttcggtt tatgcggctg
    14161 ctttttgagc ggtctgggat atctgacggc aggattaacc gccagtctgc ccgtcatcag
    14221 cctgttatta ctttgcctgg gacgcgtgat ccttgggatt gggcaaagtt ttgccggaac
    14281 gggatcgacc ctgtggggcg ttggcgtggt tggctcgctg catatcgggc gagtgatttc
    14341 gtggaacggc attgtcactt acggggcgat ggcgatgggt gcgccgttag gcgtcgtgtt
    14401 ttatcactgg ggcggcttgc aggcgttagc gttaatcatt atgggcgtgg cgctggtggc
    14461 cattttgttg gcgatcccgc gtccgacggt aaaagccagt aaaggcaaac cgctgccgtt
    14521 tcgcgcggtg cttgggcgcg tctggctgta cggtatggca ctggcactgg cttctgccgg
    14581 atttggcgtc atcgccacct ttatcacgct gttttatgac gctaaaagtt gggacggtgc
    14641 ggctttcgcg ctgacgctgt ttagctgtgc gtttgtcggt acgcgtttgt tattccctaa
    14701 cggcattaac cgtatcggcg gcttaaacgt agcgatgatt tgctttagcg ttgagataat
    14761 cggcctgcta ctggttggcg tggcgactat gccgtggatg gcgaaaatcg gcgtcttact
    14821 ggcgggggca gggttttcgc tggtgttccc ggcattaggt gtagtggcgg taaaagcggt
    14881 tccgcagcaa aatcaggggg cggcgctggc aacttacacc gtatttatgg atttatcgct
    14941 tggcgtgacc ggaccactgg ctgggctggt gatgagctgg gcgggcgtac cggtgattta
    15001 tctggcggcg gcgggactgg tcgcaatcgc gttattactg acgtggcgat taaaaaaacg
    15061 gcctccggaa cacgtccctg aggccgcctc atcatcttaa aacttactga ataaccagcg
    15121 tattaatgat gttttctgcg gtggtctgcg ctttttgctg atcgtcagcg ggcagcgtaa
    15181 tttgcatggt cagcagttga ttacccacgt tacccagaat aacggaagag tacgccgtct
    15241 ggcctttcgc ggagataata ctgtctaact gctgcatttt gtgacctttc agctcaatgg
    15301 ctttattggt taccacttgc agctgcggat cgcggctacg ttgctgatct tccagacgct
    15361 tcgccagcac cgccagatct tctttcggat catcgcccat gatgacgatg actgctttct
    15421 gcccggtggc gtcggaccag acatgcatgt tattggcctg cgttcccagc ttaccgctct
    15481 ggtcggtcat atccgctggc agcgagaaac ttaacttgcc atcaagcagg ttgacgggat
    15541 tcccggtagc gttattttcc gcgaccgaac cctgcgccgt agcgttagtg tctttatcat
    15601 cacaggccgc aagccccata accagcaggc caattccgac atatttaacc agattgcgca
    15661 ttgacttctt cctttcgata aacggccata acggctcatt catccatctt atcacaactc
    15721 tgataacgaa cctttaactc gcctgcaaag cgttgatttc ggatttatct gccagtcttt
    15781 tcaacagcat attgagtaat acgccataca ttggcaggaa gaaaacgata ctgattaaca
    15841 ctttgaaaca gtaatcgacc agcgcgattt ccatccagtg ttcagccata aaggcatccg
    15901 ggctacgcca gaaggcaatg aagaaaaagg ccagcgtgtc gctgacgtta ccgaacagtg
    15961 tggacgctgt cggtgccagc caccagcggc gactctgacg caggcggtta aaaacgtgca
    16021 cgtcgaggat ctgtcccagc gcgtaggcca tgaaactggc ggtggcgata cgggcgacaa
    16081 acaggttgaa gtgggcgagt gcgccgaatc cctgccagga acccatatag aatagcgacg
    16141 agatgacgta ggagatcagc aacgccggga tcatcaccgc aaagatgata cgacgggcca
    16201 gcggtgcgcc aaaaatacgc acggtcaggt cggtagcaag gaaaataaac gggaagctaa
    16261 acgcgcccca ggtggtatgg aaacccaaaa tggagacggg aagctgaacc agatagttac
    16321 tggaggtgat caccagcaga tgaaataacg ataaccagaa caacgcctta tagcgttgag
    16381 tttgcgagaa aacgttcata ttgtaccttt ttgattaacc attggggtga gggaacccaa
    16441 tacgtacgac acgtctgtta ccttaacata ataacgtgct tacccttttt tcgagccgcc
    16501 gcatgatact gctttacgtt gacaatgcaa tggttaattt tcacgcaatc gttaacctgg
    16561 tttgcttacg gactcacagg gcgtaaacta gcgccgtttt tttatgtgat gagaagaaaa
    16621 tgaccgatct cttttccagc cctgaccaca cactcgacgc acttggcctg cgctgcccgg
    16681 aacccgtaat gatggtgcgc aaaactgtgc gcaatatgca gcccggcgaa acgttgctga
    16741 ttatcgccga cgatccggcc actacccgcg atattcctgg gttttgtacc tttatggaac
    16801 acgaactggt tgcgaaagag acggatggac tgccttatcg ttatttgatt cgtaaaggcg
    16861 gttgatgggg gctgattggc ttcgatgccg ccttttcccc tcaccctaac cctctcccca
    16921 gaggggcgag gggaccgatc gcgctcaatg ttgcgatcgg tttgccttat ctcctgcgca
    16981 acaatcttaa cgcattcgct gtcaccagca ccgtcgcacc cgtatctgcc agcaccgcca
    17041 gccatagtcc ggtcatccct aaaagcgtgg tgacgaggaa gatccctttc agtcccagcg
    17101 caatggtgat gttctggcgg atattggcgt gagtggcgcg tgccagttca atcatttgca
    17161 ccaggccgcg caggtggtta tgggttaatg ctgcatcagc ggtttccagc gccacgtctg
    17221 tgccactgcc cattgcaatc ccaatggcgg cagctttcat cgctggcgcg tcgttaatac
    17281 cgtcaccgac catcgccagc ggcgcatgtt gattcagctc ggtcaccgct ttgactttat
    17341 attccggcaa caggcccgct ttaaactcca gccccagctc cccggcaatt gccgccgctg
    17401 cgcgtggatt atcgccggtg aggatcaccc ctttgacgcc cagcgcgttc agttcactga
    17461 tggcagttgc agcatcggcg cgcagggtat cctgcaatgc aatgataccc agcacgtcat
    17521 cattacgtac taccagcaca accgtttgcc cggcgctttc cagttcatta atcaaaccag
    17581 caaatgcatc agcgggatgt ttcccggcag cgcatatcaa cacgcgctca ccgttaacct
    17641 gcgcttcaat gccagacccg accagcgccc gctgtgattc ggcggcggga atggcgagtg
    17701 cagcaacctg tgcttcgcgc acgatggcct gcgccagtgg atgcgtcgcg ctttgctcga
    17761 ccgccgccgc cagtgtcagc agttcagatt cactaatacc cgttgccgga tgaatcgcgg
    17821 taacgcgcgg tttaccgacg gtcagcgtac cggttttatc aaacgccacc tgagtaacac
    17881 gacctagttg ttccagcgcc gctccgcctt taatcaacgc cccacgacgc gctgctgccg
    17941 ccagcccgga ggtaatcgcc gcgggcgtgg agataactaa cgcacacggg cagccaatca
    18001 gcagcagcgt caggccttta taaatccact cctgccagct ggcggcaaac agcagcggtg
    18061 gcaccagcgt caccagcagg gcgacggcca taatcgctgg cgtataaata cggctgaaac
    18121 ggtcgataaa ccgctcaatg ggggcgcggc gctcttcggc ttcttcgatc agtttcagaa
    18181 tccggtcaat ggcgctggca cccggttctg acagcacttc cagcgttacc agacggtcta
    18241 cgctggtggc tcctgcagga actttatcgc ccgtcgcgcg ctccaccgga atggattctc
    18301 cggtcagggc gctttcatca aaactggcaa acggtgagag cagtttaccg tcggcaggca
    18361 aacgcccacc tgcggcgact tcaatcacat cgccaggccg caggctgtta atcgccacct
    18421 cttcccgctc accgttacgc aggcgcgtgg cggtttctgg tttcagcgcc attaacgcgc
    18481 taacgccctg acgcgcgcgg ctggcggccc agccttccag tcgttcacca atcaaaaaca
    18541 gcagcaacac catcgcagct tcagccgttg cgccaataaa cagtgcacca atagcggcta
    18601 cgctcattaa ggtttcaatg gcgaagtagc tgccggattt gatcagccgt aatgcctgat
    18661 gagcaatcgg gtacagccca accagcgtgg tcgcgataaa cgccagttgc ccgaacggat
    18721 gattgaactg ctccagaccc cagctgattg ccatcatcac gattagtgta atcagcggca
    18781 gattctcttt caggcgcgat gcttgtggct cgtcggcggc ctgctcatcg cgcagggaat
    18841 agcccgcttt ttgcaccgca gattcaactt gtgcacgaat gtcattgtcg gcatcaacca
    18901 ccagtttttc ggtggcgaac aacacctgca cctgattcac acctgcaagc tggcgcacgg
    18961 cattttctac cttgcgcgca caggcggcgc agtccatgcc actgactttc cagctatagc
    19021 gggtgccgga gacgttttca gagagcgttg gcgagctgga gcatgcgccg tcgcagcaac
    19081 agtcgttggc gttctgtacc gtggttagcg gtttgaacgc agcaaattga ggggctttct
    19141 tgccgtgatt gtcaggtgtc gacatggcat actccggtta agttttttct cattaaccga
    19201 aggatacact ctggagtcga ctccagagtc aagttttatc agaaatacag tgagcggacg
    19261 atgaggaagt gaccggcaaa gtagcaggcc gcagcaatcg cgttatccgc acggaagcgt
    19321 cggcgatagt ggctccccag ccagacaaag ttactgataa acagcaacga agcgccaaca
    19381 aacgcagaga gcgccggagc ggtcggacgg aagaaccaca gttcacctgc cagccacacc
    19441 atcaccagcg tcatgccgat aaacgtgcag ataggccaac gatactcttc cagccgcgtc
    19501 cagataatcg ccagtaacag cgcacccaga accagcaaca ccagtggcag aggccagaag
    19561 aaagagagcg tcatctgact ggcgaaatag atggtgtaca gcaggtgcga gaggaaaaac
    19621 gcgccgatgg cgtacatcag acgttgacgt ggcaacaggg ttagcgcatc gcccagcagt
    19681 gaggcgcaca gccctgccag caccagatag ctaatggcgt cgaacatcgg cgcttgccag
    19741 gccagtaaca gcaggagaag aagggttaac ggtttaaaca cccagcgttg ccaggttggc
    19801 ccacgatacg atgcatccac agatagccat gcggaaagac agacagcgat aaacgaccaa
    19861 agcatcttag ttccttgaat tcgttatttt ttcgtaagcg gaatgcctac ggtcttgctt
    19921 ccagtttagt ggcgagggtg gacggatgac aacaccataa ctagcagggt atgcttattt
    19981 ccgcattttc cgatgaggga taaagatgag caaaccacct cttttcttta ttgttatcat
    20041 tggcttaatt gtcgtcgccg catcgtttcg ttttatgcaa cagcgacggg aaaaagctga
    20101 taatgatatg gctccgctcc agcaaaagct ggtggtggtg agcaacaagc gggaaaaacc
    20161 gattaacgat cgccgttcgc gccagcagga agtgactccg gcaggcacca gtatgcgcta
    20221 tgaggcaagc ttcaaaccgc aaagcggagg aatggagcag acgtttcgcc tcgacgccca
    20281 gcagtaccat gccctgacag tgggcgataa aggtacgctg agctataaag gaacgcgctt
    20341 tgttagcttt gttggcgaac aataaggtta ttttttaact ttaaatttct tctgccagac
    20401 cagcagttca aacacgccga aaaggaaaat ccgcaccttt tcggcggtgg tcatctgcgg
    20461 gccatctttc ggtaaagtgg atttcaatag cgccagctgc ataccatgca tcagcacggt
    20521 aaaaatcagc gccacgttaa cgaaaatatt cagcgggcgc gggaagggat gcaccagatt
    20581 gaggattaaa aatccccaaa cgcagagcat taacaaacga ccaatattaa tcagcatcac
    20641 tttctccttg tgcttcgcgt tgatacagcc gataagccac ctgacccgcc actttttccc
    20701 gatgtaatga ccagtttgcc ggaacagtgg gcagaccgtt ttcgacttcg ctttcgacat
    20761 aaatcagggc ttcgtcagcc agccagccgt tatcttccag taaatttatc gtctcttcta
    20821 acaagccacg gcggaacggt ggatcgacaa acacgatatt atgcggtgta cctttttgcg
    20881 ccaggaatga catcgcgttg ctgttcacca cgcgtgcatt gcctgctttt agtgtcgcca
    20941 gattcttaat taactgctga gaaaccgcgc gatccatctc aatcaacgtg gcccccgcag
    21001 cgtagcgcga taacgcttcc agtcccagcg cgccgctccc ggcgaagcaa tccagacatt
    21061 gggcgtcaac aatgaccgga gccagccagt taaacaatgt ttcgcgtacg cggtcggtgg
    21121 tggggcgcag acctgggcta tcaggaaccg ggagtttacg gcctcgccac tgcccgccaa
    21181 taatgcggat ttggccgctg ccggaatgat tcggtttttt catgataaat tgctcaatcc
    21241 gccagataac acatacttgc aggcggtgat gtgaattaag ttaagtgata gactatttca
    21301 tcattttttt agctgctatg tacatagcgt taacgctgtg ccatgaagca acagcgagga
    21361 gtgtagtcgc aaatggcgaa agaaaaaaaa cgtggctttt tttcctggct gggctttggt
    21421 caaaaagagc agaccccgga aaaagagaca gaagttcaga atgaacaacc ggttgtagaa
    21481 gaaatcgttc aggcgcaaga gcctgcgaag gcttctgaac aagccgtcga agagcaaccg
    21541 caggcgcata ctgaagccga ggcggaaact tttgctgccg acgttgtgga agtcactgaa
    21601 caggttgctg aaagtgaaaa agcgcagcct gaagcggaag tcgttgcaca gccggaaccg
    21661 gtcgtagaag aaacgccgga gccagtggct atcgaacgtg aagagctgcc gttgccggaa
    21721 gacgtcaacg ccgaagaggt ttcgccagaa gagtggcagg ctgaagcgga aaccgtagag
    21781 attgtcgaag cggcggaaga agaagcggct aaagaagaaa tcaccgacga agagctggaa
    21841 gcacaggcgc tggctgccga agcggcagaa gaggcggtga tggtggttcc tccggtagaa
    21901 gagcagccgg tggaagaaat cgctcaggag caggaaaaac cgaccaaaga aggtttcttc
    21961 gcgcgcctga aacgcagcct gttaaaaacc aaagaaaatc tcggttccgg atttatcagc
    22021 ctgttccgcg gtaaaaaaat cgacgatgat ctgtttgagg agctggaaga acagctgttg
    22081 atcgccgatg tgggcgtgga aaccacacgt aaaattatca ccaatctgac ggaaggcgca
    22141 tcccgcaagc agcttcgtga tgccgaggcg ctctatggcc tgctgaaaga agagatgggc
    22201 gagattctgg cgaaagtcga tgagccgctg aatgttgaag gtaaaacgcc gttcgtgatc
    22261 ctgatggtgg gcgtcaacgg tgtgggtaaa actacgacga ttggtaagct ggcacgtcag
    22321 tttgagctgc agggtaaatc ggtgatgctg gcggcgggcg atactttccg tgcagcagcg
    22381 gttgaacagc ttcaggtctg gggtcagcgc aacaatattc cggtgattgc ccagcatacc
    22441 ggtgcggatt ccgcctctgt tatcttcgac gccattcagg cagctaaagc gcgtaatatc
    22501 gacgtcctga ttgccgatac cgccggacgc ctgcagaaca aatcgcacct gatggaagag
    22561 ttgaagaaaa tcgtccgcgt gatgaagaaa ctcgacgttg aagcgccgca tgaagttatg
    22621 ctgactattg atgccagtac cgggcagaat gcggtaagcc aggccaaact gttccacgaa
    22681 gccgttggct taaccggcat cacgctaacg aaactggacg gcacggcgaa aggcggggta
    22741 attttctcgg tggctgacca gtttggtatc cctatccgct acattggtgt cggcgaacgt
    22801 attgaggatt tgcgtccgtt taaggcggac gactttatag aggcactttt tgcccgagag
    22861 gattaacaat gattcgcttt gaacatgtca gcaaggctta tctcggtggg agacaggcgc
    22921 tgcagggcgt tacgttccat atgcagccgg gtgagatggc gtttctgacc ggtcattccg
    22981 gcgcagggaa aagtaccctc ctgaagctga tctgtgggat tgagcggccc agcgccggga
    23041 aaatctggtt tagcggccat gacatcacgc gtctgaaaaa ccgtgaagtt ccgtttctgc
    23101 gccgccagat tggcatgatt ttccaggatc accatctact gatggaccgt actgtctacg
    23161 ataacgtggc gatcccgctg attatcgctg gtgccagcgg tgacgatatt cgtcgccggg
    23221 tgtcggcggc actggataaa gtcgggctac tggacaaagc gaagaacttc cctattcagc
    23281 tttccggcgg tgaacaacag cgtgttggca ttgcccgcgc ggtggtgaat aagcccgcgg
    23341 tactgctggc ggacgaaccg accggtaacc tggacgacgc gttgtcggaa gggattctac
    23401 gtctgtttga agagtttaac cgcgttgggg taaccgtatt gatggcaacg cacgacatca
    23461 acctgatttc acggcgttcc tatcgcatgc tcaccctgag cgatggtcac ttgcatggag
    23521 gcgtgggcca tgaataagcg cgatgcaatc aatcatattc ggcagtttgg tgggcgtctg
    23581 gatcgcttcc gtaaatcggt cggcggctca ggcgacggcg gtcgtaacgc accgaaacgc
    23641 gcgaaatcct cgccaaaacc ggtaaatcgc aaaaccaacg ttttcaacga acaggtgcgc
    23701 tatgccttcc acggcgcatt gcaggatctg aaaagcaaac cgttcgccac gtttttaacg
    23761 gtgatggtta tcgccatctc cctgacgctg cccagcgtct gttatatggt gtacaaaaac
    23821 gttaatcagg cggcgacgca gtattatccg tcaccgcaaa tcactgttta cttgcaaaaa
    23881 acgctggacg atgacgccgc tgcgggcgtg gtggcacagt tgcaggccga gcaaggcgtg
    23941 gagaaagtga actatctttc tcgtgaagac gcactgggcg agttccgtaa ctggtctggt
    24001 tttggtggtg cgctggatat gctggaagaa aacccgcttc cggcagtggc ggtggtgatc
    24061 ccgaaactcg attttcaggg gacggaatca ctcaatacgc tgcgtgatcg tatcacgcag
    24121 attaacggca ttgacgaagt gcggatggat gacagctggt ttgcccgtct ggcggcgttg
    24181 accgggctgg tcgggcgcgt ttcggcgatg atcggcgtgt tgatggtggc ggcagtgttc
    24241 ctcgtcatcg gcaacagcgt acgtctgagc atctttgctc gccgtgactc catcaacgtg
    24301 cagaaactga ttggtgcgac ggatggtttc atccttcgcc cgttcctgta tggtggcgca
    24361 ctgctgggat tttctggcgc attgttgtca ttaattttgt cagaaattct ggtgctgcga
    24421 ttgtcatcgg cggttgcgga agtggcacag gttttcggaa cgaattttga tatcaatggt
    24481 ttatcgttcg atgaatgcct gctattgctg ctggtatgct cgatgattgg ctgggtggca
    24541 gcgtggcttg ccacggtaca acatttacgc cactttacgc ctgaataata aaagcgtgtt
    24601 atactctttc cctgcaatgg gttccgtagc agggaaagag atcccgttgt ctcttcccgg
    24661 tatttcatct ctatgtcaca ttttgtgcgt aatttattca caagcttgca ttgaacttgt
    24721 ggataaaatc acggtctgat aaaacagtga atgataacct cgttgctctt aagctctggc
    24781 acagttgttg ctaccattga agcgccagaa gatatcgatt gagaggattt gaatgactga
    24841 caaaatgcaa agtttagctt tagccccagt tggcaacctg gattcctaca tccgggcagc
    24901 taacgcgtgg ccgatgttgt cggctgacga ggagcgggcg ctggctgaaa agctgcatta
    24961 ccatggcgat ctggaagcag ctaaaacgct gatcctgtct cacctgcggt ttgttgttca
    25021 tattgctcgt aattatgcgg gctatggcct gccacaggcg gatttgattc aggaaggtaa
    25081 catcggcctg atgaaagcag tgcgccgttt caacccggaa gtgggtgtgc gcctggtctc
    25141 cttcgccgtt cactggatca aagcagagat ccacgaatac gttctgcgta actggcgtat
    25201 cgtcaaagtt gcgaccacca aagcgcagcg caaactgttc ttcaacctgc gtaaaactaa
    25261 gcagcgtcta ggctggttta accaggatga agtcgaaatg gtggcccgtg aactgggcgt
    25321 aaccagcaaa gacgttcgtg agatggaatc acgtatggcg gcacaggaca tgacctttga
    25381 tctgtcttcc gacgacgatt ccgacagcca gccgatggca ccggtgctct atctgcagga
    25441 taaatcatct aactttgccg acggcatcga agatgataac tgggaagagc aggcggcaaa
    25501 ccgtctgacc gacgcgatgc aaggtctgga cgaacgcagc caggacatca tccgcgcgcg
    25561 ctggctggac gaagacaaca agtccacgtt gcaggaactg gctgaccgtt acggtgtttc
    25621 cgctgaacgt gtacgccagc tggaaaagaa cgcgatgaaa aaactgcgcg ctgctataga
    25681 agcgtaattt ccgctattaa gcagagaacc ctggatgaga gtccggggtt tttgtttttt
    25741 gggcctctac aataatcaat tccccctccg gcaaaacgtc aatccccacg cagattgtta
    25801 ataaactgtc aaaatagcta ttccaatatc ataaaaatgg ggtatgtttt agcagagtat
    25861 gctgctaaag cacgggtagt catgcataaa acgaaataaa gtgctaaatc acaacaccac
    25921 aacacacgta ataaccagaa gaatggggat tctcaggatg aatataaagg gtaaagcgtt
    25981 actggcagga tgtatcgcgc tggcattcag caatatggct ctggcagaag atattaaagt
    26041 cgcggtcgtg ggcgcaatgt ccggtccggt tgcgcagtac ggtgaccagg agtttaccgg
    26101 cgcagagcag gcggttgcgg atatcaacgc taaaggcggc attaaaggca acaaactgca
    26161 aatcgtaaaa tatgacgatg cctgtgaccc gaaacaggcg gttgcggtgg cgaacaaagt
    26221 cgttaacgac ggcattaaat atgtgattgg tcacctctgt tcttcatcaa cgcagcctgc
    26281 gtctgatatc tacgaagacg aaggcatttt aatgatcacc ccagcggcaa ccgcgccgga
    26341 gctgaccgcc cgtggctatc agctgatcct gcgcaccacc ggcctggact ccgaccaggg
    26401 gccgacggcg gcgaaatata ttcttgagaa agtgaaaccg cagcgtattg ctatcgttca
    26461 cgacaaacag caatacggcg aaggtctggc gcgagcggtg caggacggcc tgaagaaagg
    26521 caatgctaac gtggtgttct ttgatggtat caccgccggg gaaaaagatt tctcaacgct
    26581 ggtggcgcgt ctgaaaaaag agaatatcga cttcgtttac tacggcggtt atcacccgga
    26641 aatggggcaa atcctgcgtc aggcacgcgc ggcagggctg aaaactcagt ttatggggcc
    26701 ggaaggtgtg gctaacgttt cgctgtctaa cattgcgggc gaatcagcgg aagggctgct
    26761 ggtgaccaag ccgaagaact acgatcaggt tccggcgaac aaacccattg ttgacgccat
    26821 caaagcgaaa aaacaggacc caagcggcgc attcgtttgg accacctacg ccgcgctgca
    26881 atctttgcag gcgggcctga atcagtctga cgatccggct gagatcgcca aatacctgaa
    26941 agcgaactcc gtggataccg tgatgggtcc gctgacgtgg gatgagaaag gtgatctgaa
    27001 aggctttgag ttcggcgtat ttgactggca cgccaacggc acggcgaccg atgcgaagta
    27061 atcattaatc ggcaactttg ggttgccgcc aaattgctaa tatcgagtac gttgcttcat
    27121 gccggatgcg gcgtaaacgc cttatccggc ctacaagatc caaagaaatc agtaaattgc
    27181 aacacacatt gtaggcctga taagcgtagc gcatcaggca atttctcgtt ggtcatcact
    27241 tttgaaatca acttgacgat taacgcttct cccagccgcc ctgttgcgcc gtaaatccca
    27301 gtgcctgcat aaacgccgtc atcacaccgc gatcttccac gcctgcatcc gccatccacc
    27361 agcatgaaac gccaggattg ttacgcaaaa cctcttccag cagatattgc cccacaccgc
    27421 gacgtcgggt gacttcccgc acacgcaggg aatccagtgc tccctcggtg ccgcttaagg
    27481 ttacccgtac ggcagcgagc aggcgctcgt taaaacgcgc ggcgtagata cggtggttat
    27541 cgtcaacctg taaagaggaa ggggaatact ccggccagat cttttgcagg tcaatccggt
    27601 cctggtcgct aaagttttct aatcgaatga tggtcagctt catgggtaac ccgtgtaaat
    27661 cacaaaagtg gaaccagtgt agcgaaataa tttaatcgga ggctttctct tttttatttc
    27721 ttttggcagg tgattaattt tttaacagca ataattacaa agttaaaaca ttagagaatg
    27781 aaaaataccc agcataatcc cctgaatggt agtgaattat tccgcccttt gtgccgttat
    27841 tttatgctga
//
LOCUS       DADMJB010000036        27676 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.036, whole genome shotgun sequence.
ACCESSION   DADMJB010000036 DADMJB010000000
VERSION     DADMJB010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27676)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27676)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27676
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.036"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(211..420)
                     /gene="fumD"
                     /locus_tag="JN078_001416"
     CDS             complement(211..420)
                     /gene="fumD"
                     /locus_tag="JN078_001416"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase FumD"
                     /protein_id="HAY9040671.1"
                     /translation="MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTA
                     LANKRIQRSELDKQAMETVINALVK"
     gene            977..2389
                     /locus_tag="JN078_001417"
     CDS             977..2389
                     /locus_tag="JN078_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010346010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase I"
                     /protein_id="HAY9040672.1"
                     /translation="MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHG
                     QRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGN
                     SEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNL
                     PGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHII
                     SKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVIT
                     ATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICER
                     TDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFP
                     DATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVV
                     MVSGALVPSGTTNTASVHVL"
     gene            2700..2936
                     /locus_tag="JN078_001418"
     CDS             2700..2936
                     /locus_tag="JN078_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006675846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major outer membrane lipoprotein"
                     /protein_id="HAY9040673.1"
                     /translation="MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQL
                     SNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK"
     gene            complement(3000..4004)
                     /gene="ldtE"
                     /locus_tag="JN078_001419"
     CDS             complement(3000..4004)
                     /gene="ldtE"
                     /locus_tag="JN078_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase LdtE"
                     /protein_id="HAY9040674.1"
                     /translation="MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTV
                     QEGDKNLQAIARRFDTAAMLILEANNTIAPVPKPGTTITIPSQLLLPDAPRQGIIVNL
                     AELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTWTPTAGIRQRSLER
                     GIKLLPVVPAGPNNPLGRYALRFAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIK
                     ALFSSVRTGTPVKVINEPVKYSVEPNGMRYVEVHRPLSAEEQQNVQTMPYTLPAGFTQ
                     FKDNKAVDQKLVDKALYRRAGYPVSVSSGATPAASNAPSVESAQNGEPEQGNMLRARQ
                     "
     gene            complement(4153..4569)
                     /gene="sufE"
                     /locus_tag="JN078_001420"
     CDS             complement(4153..4569)
                     /gene="sufE"
                     /locus_tag="JN078_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfuration protein SufE"
                     /protein_id="HAY9040675.1"
                     /translation="MALLPDKEKLLRNFLRCANWEEKYLYIIELGQRLPELRDEDRSP
                     QNSIQGCQNQVWIVMRQNAQGIIELQGDSDAAIVKGLIAVVFILYDQMTPQDIVNFDV
                     RPWFEKMALTQHLTPSRSQGLEAMIRAIRAKAAALS"
     gene            complement(4582..5802)
                     /gene="sufS"
                     /locus_tag="JN078_001421"
     CDS             complement(4582..5802)
                     /gene="sufS"
                     /locus_tag="JN078_001421"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase SufS"
                     /protein_id="HAY9040676.1"
                     /translation="MTFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEA
                     EFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVA
                     NSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLHTL
                     FDEKTRLLAITHVSNVLGTENPLAGMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCD
                     FYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEA
                     GTPNTGGIIGLGAALEYVSVLGLNNIAEYELNLMHYALSQLESVPNLTLYGPQNRLGV
                     IAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVD
                     RLVTGLQRIHRLLG"
     gene            complement(5799..7070)
                     /gene="sufD"
                     /locus_tag="JN078_001422"
     CDS             complement(5799..7070)
                     /gene="sufD"
                     /locus_tag="JN078_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HAY9040677.1"
                     /translation="MAGLPNSSNALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTR
                     KHENWKYTSLEGLTNSQFVSIAGEISPQQRDALALTLDAVRLVFVDGRYVPALSDAIE
                     GSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMYITQG
                     VAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKL
                     AFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMP
                     VKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNN
                     LLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQMFYLRSRGINQQDAQQMIIYA
                     FAAELTEALRDEGLKQQVLARIGQRLPGGAR"
     gene            complement(7045..7791)
                     /gene="sufC"
                     /locus_tag="JN078_001423"
     CDS             complement(7045..7791)
                     /gene="sufC"
                     /locus_tag="JN078_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008500629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HAY9040678.1"
                     /translation="MLSIKDLHVSVEDKAILRGLSLAVRPGEVHAIMGPNGSGKSTLS
                     ATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA
                     LNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA
                     VLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHV
                     LYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ"
     gene            complement(7801..9288)
                     /gene="sufB"
                     /locus_tag="JN078_001424"
     CDS             complement(7801..9288)
                     /gene="sufB"
                     /locus_tag="JN078_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416198.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HAY9040679.1"
                     /translation="MSRNTEATDDVKTWTGGPLNYKEGFFTQLATDELAKGINEEVVR
                     AISAKRNEPEWMLEFRLNAYRAWLEMEEPHWLKAHYDKLNYQDYSYYSAPSCGNCDDT
                     CASEPGAVQQTGANAFLSKEVEAAFEQLGVPVREGKEVAVDAIFDSVSVATTYREKLA
                     EQGIIFCSFGEAIHDHPELVRKYLGTVVPGNDNFFAALNAAVASDGTFIYVPKGVRCP
                     MELSTYFRINAEKTGQFERTILVADEDSYVSYIEGCSAPVRDSYQLHAAVVEVIIHKN
                     AEVKYSTVQNWFPGDNNTGGILNFVTKRALCEGENSKMSWTQSETGSAITWKYPSCIL
                     RGDNSIGEFYSVALTSGHQQADTGTKMIHIGKNTKSTIISKGISAGHSQNSYRGLVKI
                     MPTATNARNFTQCDSMLIGANCGAHTFPYVECRNNSAQLEHEATTSRIGEDQLFYCLQ
                     RGISEEDAISMIVNGFCKDVFSELPLEFAVEAQKLLAISLEHSVG"
     gene            complement(9297..9665)
                     /gene="sufA"
                     /locus_tag="JN078_001425"
     CDS             complement(9297..9665)
                     /gene="sufA"
                     /locus_tag="JN078_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold SufA"
                     /protein_id="HAY9040680.1"
                     /translation="MDMHSGTFNPQDFAWQGLTLTPAAAIHIRELVAKQPGMVGVRLG
                     VKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREGLNQI
                     FKFHNPKAQNECGCGESFGV"
     gene            complement(10213..10401)
                     /locus_tag="JN078_001426"
     CDS             complement(10213..10401)
                     /locus_tag="JN078_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416200.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040681.1"
                     /translation="MSTQLDPTQLAIEFLRRDQSNLSPAQYLKRLKQLELEFADLLTL
                     SSAELKEEIYFAWRLGVH"
     gene            complement(10501..10911)
                     /gene="menI"
                     /locus_tag="JN078_001427"
     CDS             complement(10501..10911)
                     /gene="menI"
                     /locus_tag="JN078_001427"
                     /EC_number="3.1.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA hydrolase"
                     /protein_id="HAY9040682.1"
                     /translation="MIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDS
                     RTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGIC
                     KPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAIL"
     gene            complement(10908..13964)
                     /locus_tag="JN078_001428"
     CDS             complement(10908..13964)
                     /locus_tag="JN078_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HAY9040683.1"
                     /translation="MIPQISQAPGVVQLVLNFLQELEQQGFTGDTATSYADRLTMSTD
                     NSIYQLLPDAVVFPRSTADVALIARLAAQERYSSLIFTPRGGGTGTNGQALNQGIIVD
                     MSRHMNRIIEINPEEGWVRVEAGVIKDQLNQYLKPFGYFFAPELSTSNRATLGGMINT
                     DASGQGSLVYGKTSDHVLGVRAVLLGGDVLDTQPLPVELAETLGKSNTTIGRIYNTVY
                     QRCRQQRQLIIDNFPKLNRFLTGYDLRHVFNDEMTEFDLTRILTGSEGTLAFITEARL
                     DITRLPKVRRLVNVKYDSFDSALRNAPFMVEARALSVETVDSKVLNLAREDIVWHSVS
                     ELITDVPDQEMLGLNIVEFAGDDEALIDERVNALCARLDELIASHQAGVIGWQVCREL
                     AGVERIYAMRKKAVGLLGNAKGAAKPIPFAEDTCVPPEHLADYIAEFRALLDSHGLSY
                     GMFGHVDAGVLHVRPELDMCDPQQEILMKQISDDVVALTAKYGGLLWGEHGKGFRAEY
                     SPAFFGEELFAELRKVKAAFDPHNRLNPGKICPPEGLDAPMMKVDAVKRGTFDRQIPI
                     AVRQQWRGAMECNGNGLCFNFDARSPMCPSMKITQNRIHSPKGRATLVREWLRLLADR
                     GVDPLKLEQELPESGVSLRTLIARTRNSWHANKGEYDFSHEVKEAMSGCLACKACSTL
                     CPIKIDVPEFRSRFLQLYHTRYLRPLRDHLVATVESYAPLMARAPKTFNFFINQPLVR
                     KLSEKHIGMVDLPLLSVPSLQQQMVGHRSANMTLEQLESLNAEQKARTVLVVQDPFTS
                     YYDAQVVADFVRLVEKLGFQPVLLPFSPNGKAQHIKGFLNRFAKTAKKTADFLNRMAK
                     LGMPMVGVDPALVLCYRDEYKLALGEERGEFNVLLANEWLASALESQPVATVSGESWY
                     FFGHCTEVTALPGAPAQWAAIFARFGAKLENVSVGCCGMAGTYGHEAKNHENSLGIYE
                     LSWHQAMQRLPRNRCLATGYSCRSQVKRVEGTGVRHPVQALLEIIK"
     gene            14353..15465
                     /gene="ydiK"
                     /locus_tag="JN078_001429"
     CDS             14353..15465
                     /gene="ydiK"
                     /locus_tag="JN078_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter YdiK"
                     /protein_id="HAY9040684.1"
                     /translation="MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTV
                     VIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISS
                     GDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHI
                     GRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGV
                     VVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTT
                     WGTVLLVWSGVVGTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLL
                     AVSWRLFAAWVEEVPPPTDQPEEILEELGEIEKPNK"
     gene            15651..15758
                     /gene="rprA"
                     /locus_tag="JN078_001430"
     ncRNA           15651..15758
                     /ncRNA_class="antisense_RNA"
                     /gene="rprA"
                     /locus_tag="JN078_001430"
                     /product="antisense sRNA RprA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00034"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00034"
     gene            15894..16273
                     /locus_tag="JN078_001431"
                     /pseudo
     CDS             15894..16273
                     /locus_tag="JN078_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001014786.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YdiL family protein"
     gene            16218..16940
                     /locus_tag="JN078_001432"
                     /pseudo
     CDS             16218..16940
                     /locus_tag="JN078_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707590.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            16952..17818
                     /gene="ydiB"
                     /locus_tag="JN078_001433"
                     /pseudo
     CDS             16952..17818
                     /gene="ydiB"
                     /locus_tag="JN078_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416207.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="quinate/shikimate dehydrogenase"
     gene            17850..18608
                     /gene="aroD"
                     /locus_tag="JN078_001434"
     CDS             17850..18608
                     /gene="aroD"
                     /locus_tag="JN078_001434"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HAY9040685.1"
                     /translation="MKTVTVKDLVIGTGAPKIIVSLMAKDIARVKSEALAYREADFDI
                     LEWRVDHFADLSNVESVMAAAKILRETMPEKPLLFTFRSAKEGGEQAISTEAYIALNR
                     AAIDSGLVDMIDLELFTGDDQVKETVACAHAHDVKVVMSNHDFHKTPEAEEIIARLRK
                     MQSFDADIPKIALMPQSTSDVLTLLAATLEMQEQYADRPIITMSMAKTGVISRLAGEV
                     FGSAATFGAVKKASAPGQISVNDLRTVLTILHQA"
     gene            18754..20349
                     /locus_tag="JN078_001435"
     CDS             18754..20349
                     /locus_tag="JN078_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl CoA:acetate/3-ketoacid CoA transferase"
                     /protein_id="HAY9040686.1"
                     /translation="MKPVKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEAT
                     TLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRI
                     SELAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKE
                     DLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNN
                     GGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLD
                     DSTKLSLPLNQRKLVARRALFEMRKGAVGNVGVGIADGIGLVAREEGCADDFILTVET
                     GPIGGITSQGIAFGANVNTRAILDMTSQFNFYHGGGLDVCYLSFAEVDQHGNVGVHKF
                     NGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIQELPEI
                     TFSGKIALERELDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILDKMDFTPVISPE
                     LKLMDERLFIDAAMGFVLPEAAH"
     gene            20363..21514
                     /locus_tag="JN078_001436"
     CDS             20363..21514
                     /locus_tag="JN078_001436"
                     /EC_number="1.3.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310429.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HAY9040687.1"
                     /translation="MDFSLTEEQELLLASIRELITTNFAEEYFRTCDQNGTYPREFMR
                     ALADNGISMLGVPEEFGGIPADYVTQMLALMEVSKCGAPAFLITNGQCIHSMRRFGSA
                     EQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYINGQKTFITGAK
                     EYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKINPLHKIGWHMLSTCEVYLDNVEV
                     EESDMVGEEGMGFLNVMYNFEMERLINAARSTGFAECAFEDAARYANQRIAFGKPIGH
                     NQMIQEKLALMAIKIDNMRNMVLKVAWQADQHQSLRTSAALAKLYCARTAMEVIDDAI
                     QIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILKDYQNK"
     gene            complement(21557..22468)
                     /locus_tag="JN078_001437"
     CDS             complement(21557..22468)
                     /locus_tag="JN078_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HAY9040688.1"
                     /translation="MYQRCFDNASETLFVAGKTPRLSRFAFSDDPKWESGHHVHDNET
                     ELIYVKKGVARFTIDSSLYVAHADDIVVIERGRLHAVASDVNDPATTCTCALYGFQFQ
                     GAEENQLLQPHSCPVIAAGQGKEVIKTLFNELSVILPQSKNSQTSSLWDAFAYTLAIL
                     YYENFKNAYRSEQGYIKKDVLIKDILFYLSNNYREKITLEQLSKKFRASVSYICHEFT
                     KEYRISPINYVIQRRMTEAKWSLTNTELSQAEISWRVGYENVDHFAKLFLRHVGCSPS
                     DYRRQFKNCFAEQEILSEFPQPVSLVG"
     gene            22782..23553
                     /locus_tag="JN078_001438"
                     /pseudo
     CDS             22782..23553
                     /locus_tag="JN078_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416212.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein"
     gene            23573..24511
                     /locus_tag="JN078_001439"
     CDS             23573..24511
                     /locus_tag="JN078_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit alpha"
                     /protein_id="HAY9040689.1"
                     /translation="MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTDQAQAV
                     MPYGPKCIYVLEQNDALQRTENYAESIAAPLKDKHPAMLLLAATKRGKALAARLSVQL
                     NAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSH
                     QCPTETVPYVAPRHEILCRERRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAA
                     VLNAEVGCSRPIAEGENWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVI
                     VAINKDKNAPIFNYADYGLVGDIYKVVPALISQLSR"
     gene            24567..25856
                     /locus_tag="JN078_001440"
     CDS             24567..25856
                     /locus_tag="JN078_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HAY9040690.1"
                     /translation="MSDDKFDAIVVGADVASSVAALVMARAGLDVLVIERGDSAGCKN
                     MTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHAS
                     YTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILQANVVVLAD
                     GVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSD
                     GLMGGGFLYTNKDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEY
                     SAHMVPEGGLAMVPQMVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAA
                     KEREDFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYSRMVADIMNEMF
                     TIDGKPNQPVRKMIMGHAKKIGLINLLKDGIKGATAL"
     gene            25853..26146
                     /locus_tag="JN078_001441"
     CDS             25853..26146
                     /locus_tag="JN078_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HAY9040691.1"
                     /translation="MSQNATVNVDIKLGVNKFHVDEGHPHIILAANPDINEFRKLMKA
                     CPAGLYKQDDAGNIHFDSAGCLECGTCRVLCGNTILEQWQYPAGTFGIDFRYG"
     gene            26149..>27676
                     /gene="fadK"
                     /locus_tag="JN078_001442"
     CDS             26149..>27676
                     /gene="fadK"
                     /locus_tag="JN078_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416216.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="medium-chain fatty-acid--CoA ligase"
                     /protein_id="HAY9040692.1"
                     /translation="MHPTGPHLGPDVLFRESKMKVTLTFNEQRRAAYRQQGLWGDASL
                     ADYWQQTARAMPDKIAVVDNHGATYTYSALDHAASCLANWMLAKGIESGDRIAFQLPG
                     WCEFTVIYLACLKIGAVSVPLLPSWREAELVSVLNKCQAKMFFAPTLFKQTRPVDLIL
                     PLQNQLPQLQQIVGVDKLAPATSSLSLSPIIADNTSLTTAITTHGDELAAVLFTSGTE
                     GLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARS
                     VLLDIFTPDACLALLEQQRCTCMLGATPFVYDLLNVLEKQPADLSALRFFLCGGTTIP
                     KKVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDDAR
                     KTLPPGCEGEEASRGPNVFMGYFDEPELTARALDEEGWYCSGDLCRMDEAGYIKITGR
                     KKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLS
                     L"
BASE COUNT         6905 a         7003 c         6803 g         6965 t
ORIGIN      
        1 aactgatatt tattatcatt tgaaataaat ttaacttaag cgacaattat ttgtgacgtt
       61 cattgcagaa aataaaaata atattatcgt tataaattaa aatacatacc gcaattcgta
      121 taatttcagc agttgttatt tagaatgatt aactggaccg caactgaagc aagaatatca
      181 ggatgaagct taccgcctca tcctgaatgg tcattttacc agtgcgttaa tgacggtttc
      241 catcgcctgc ttatccagct cactgcgctg aatgcgttta ttggctaatg ctgtacgtaa
      301 tacgcctgcg ataacaatat gctttggttc ctgccccaga tcgcgcattt ccagcacaac
      361 tttaccgaca actctgcaca tttctcggta cagttcatcc tcttttgtcc gatttcccat
      421 tctttatacc tatttatcat gccaactatc agcatatatc aatctaacca attaaacaaa
      481 aatcaaacaa aatcagacaa ataacgcgat aaattatttt aactgtagca attgagcgat
      541 gatatattta tacaccggat gaactttcac ttatcctcac actgacaact ttggcaccag
      601 acgttgcgca aacagcgaag tttttgcgta accttttccc tggaacgtta aatctttgat
      661 aacaatttat tgtctaacaa gttgtatatt ttttgaaacg ctgtttttgt tttccttttg
      721 gattaatttc agcgtataat gcgcgccaat tgactcttga atggtttcag cactttggac
      781 tgtagaactc aacgactcaa aaacaggcac tcacgttggg ctgagacaca agcacacatt
      841 cctctgcacg ctttttcgat gtcacttatc cttagagcga ggcaccacca ctttcgtaat
      901 accggattcg ctttccggca gtgcgcccag aaagcaagtt tctcccatcc ttctcaactt
      961 aaagactaag actgtcatga aaaagaccaa aattgtttgc accatcggac cgaaaaccga
     1021 atctgaagag atgttagcta aaatgctgga cgctggcatg aacgttatgc gtctgaactt
     1081 ctctcatggt gactatgcag aacacggtca gcgcattcag aatctgcgca acgtgatgag
     1141 caaaactggt aaaaccgccg ctatcctgct tgataccaaa ggtccggaaa tccgcaccat
     1201 gaaactggaa ggcggtaacg acgtttctct gaaagctggt cagaccttta ctttcaccac
     1261 tgataaatct gttatcggca acagcgaaat ggttgcggta acgtatgaag gtttcactac
     1321 tgacctgtca gttggcaaca ccgtactggt tgacgatggt ctgatcggta tggaagttac
     1381 cgccattgaa ggtaacaaag ttatctgtaa agtgctgaac aacggtgacc tgggcgaaaa
     1441 caaaggtgtg aacctgcctg gcgtttccat tgctctgcca gcactggctg aaaaagacaa
     1501 acaggacctg atctttggtt gcgaacaagg cgtagacttt gttgctgctt cctttattcg
     1561 taagcgttct gacgttatcg aaatccgtga gcacctgaaa gcgcacggcg gcgaaaacat
     1621 ccacatcatc tccaaaatcg aaaaccagga aggcctcaac aacttcgacg aaatcctcga
     1681 agcctctgac ggcatcatgg ttgcgcgtgg cgacctgggt gtagaaatcc cggtagaaga
     1741 agttatcttc gcccagaaga tgatgatcga aaaatgtatc cgtgcacgta aagtcgttat
     1801 cactgcgacc cagatgctgg attccatgat caaaaaccca cgcccgactc gcgcagaagc
     1861 cggtgacgtt gcaaacgcca tcctcgacgg tactgatgca gtgatgctgt ctggtgaatc
     1921 cgcaaaaggt aaatacccgc tggaagcggt ttctatcatg gcgaccatct gcgaacgtac
     1981 cgaccgcgtg atgaacagcc gtctcgagtt caacaatgac aaccgtaaac tgcgcattac
     2041 cgaagcggta tgccgtggtg ccgttgaaac tgctgaaaaa ctggatgctc cgctgatcgt
     2101 ggttgctact cagggcggta aatctgctcg cgcagtacgt aaatacttcc cggatgccac
     2161 catcctggca ctgaccacca acgaaaaaac ggctcatcag ttggtactga gcaaaggcgt
     2221 tgtgccgcag ctggttaaag agatcacttc tactgatgat ttctaccgtc tgggtaaaga
     2281 actggctctg cagagcggtc tggcacacaa aggtgacgtt gtagttatgg tttctggtgc
     2341 actggtaccg agcggcacta ctaacaccgc atctgttcac gtcctgtaat attgcttttg
     2401 tgaattaatt tgtatatcga agcgccctga tgggcgcttt ttttatttaa tcgataacca
     2461 gaagcaataa aaaatcaaat cggatttcac tatataatct cactttatct aagatgaatc
     2521 cgatggaagc atcctgtttt ctctcaattt ttttatctaa aacccagcgt tcgatgcttc
     2581 tttgagcgaa cgatcaaaaa taagtgcctt cccatcaaaa aaatattctc aacataaaaa
     2641 actttgtgta atacttgtaa cgctacatgg agattaactc aatctagagg gtattaataa
     2701 tgaaagctac taaactggta ctgggcgcgg taatcctggg ttctactctg ctggcaggtt
     2761 gctccagcaa cgctaaaatc gatcagctgt cttctgacgt tcagactctg aacgctaaag
     2821 ttgaccagct gagcaacgac gtgaacgcaa tgcgttccga cgttcaggct gctaaagatg
     2881 acgcagctcg tgctaaccag cgtctggaca acatggctac taaataccgc aagtaatagt
     2941 acctgtgaag tgaaaaatgg cgcacattgt gcgccatttt ttttgtctgc tatttaccac
     3001 tactgcctcg cgcgtaacat attcccttgc tctggttcac cattctgcgc tgactctact
     3061 gaaggcgcat tgctggctgc gggagttgct ccactgctca ccgaaaccgg ataccctgcc
     3121 cgacgataca acgctttatc gactaacttc tgatctacag ccttattgtc tttaaattgc
     3181 gtaaagcctg ctggcagtgt gtatggcatt gtctgaacgt tctgctgttc ttctgccgat
     3241 agtggtcgat gtacttcaac ataacgcatc ccgttaggct ccacggaata tttcaccggt
     3301 tcgttgatca ctttcaccgg cgttcccgtc cgcacgctgg agaataaggc tttaatatcc
     3361 ggtgcattca tgcgaataca gcccgaactg acgcgtaaac cgacgctgtc cggcgcactg
     3421 gtaccatgaa tgaggtattc gccattacca tgcgcgaagc gcagtgcgta acgtcctagc
     3481 gggttatttg gtccggcagg aacgactggc agtaatttaa tgccacgctc cagcgaacgt
     3541 tgacgaatgc ctgccgtagg cgtccaggtt ggattaggga ttttctgccc cacacgcgtt
     3601 tccatcaccg gcgtttccag cccctgcaag ccaataccta tcggataaac ctgcacgata
     3661 ttttctcccg gcggataata ataaaggcgc agctctgcaa ggttaacgat aatcccctga
     3721 cgcggtgcat caggtaataa cagttgtgaa ggaatagtta tcgtcgtacc aggttttggc
     3781 accggggcga tagtgttatt ggcttcaagg atcaacattg ccgcagtatc aaaacgtcgg
     3841 gcaatagcct gaaggttttt atccccttct tgcaccgtat acgtttgatt ttgcccaacc
     3901 agtcggcttc cggttggtgg tagcggataa tcaaccgccc aggcagcctg gatggcgcta
     3961 aaagcgccga taagcgtgag tgtaagcaaa gacgcgcgtt tcattgtaaa cctcctgtat
     4021 ttgccggaga ctcacgctga aacgtcggat ggcgcttatg ttcacctgaa accaaaacac
     4081 tcctgtgcag gtcagtgtaa acattgacca tccggcaatg tgagccaacc ggatgaaagc
     4141 tgtcccttta gtttagctaa gtgcagcggc tttggcgcga attgcgcgaa tcatcgcttc
     4201 cagaccttgt gaacgagatg gggtgagatg ttgggtgagc gccatttttt caaaccacgg
     4261 acgcacatcg aaattgacaa tatcctgcgg cgtcatctga tcgtagagaa taaatacgac
     4321 cgcaataagc cctttcacaa tcgccgcatc gctgtcgccc tgcaattcaa taattccctg
     4381 cgcattctgg cgcatgacaa tccacacctg attctggcag ccctgaatgc tattttgtgg
     4441 gcttcggtct tcgtcgcgta attctggcag acgctggccc agctcaataa tgtagagata
     4501 tttctcttcc cagttggcgc agcgtaaaaa attacgcagc aatttttctt tatccggcaa
     4561 taaagccata gtgcctccct gttatcccag cagacggtga atacgttgca ggccggtcac
     4621 cagacgatcc acttcttcat gagtgttata catggccagc gacgcccgac acatcgcagg
     4681 gacgttgtaa taggccatta atggcatagc gcagtgatgt ccggtacgca cagcaatgcc
     4741 gtaattatcg agaaaactgc caacatcata ggcgtggtgt ttaccgagat taaaagcaat
     4801 aacgccaagc ctgttttgtg ggccatagag agtgagattc ggtacagatt ccagctgtga
     4861 tagcgcgtaa tgcatcagat tcagttcata ctcggctatg ttattaagcc ccagcaccga
     4921 aacatattcc agcgccgcgc caagaccaat gatgcccccg gtattgggtg taccggcttc
     4981 aaaccgccat ggtgctttgg tccaggtagt gccttcactc aggctgacgg tggcgatcat
     5041 agaaccgccc ccttcccacg gcggcatctc ctgcaacaag gcttctttga cataaagaat
     5101 gccaatcccg gtggggccat acagtttatg cccggaaaac acgtaaaaat cgcaatccag
     5161 cgcctgaaca tccaccggat gatgcatcac cgcctgagcg ccatccacca gcacttttgc
     5221 gccatgctgg tgcgcaagcg tgatcattcc cgccagtgga ttttctgtgc caagcacgtt
     5281 ggagacatga gtaattgcca gcaggcgagt tttctcatca aacagcgtat gcagcgtctc
     5341 cagttgcagc gtaccgtcgg ggttgagagg gatcacacgc agctctgcgc caacgcgtgc
     5401 gcaaagcatc tgccagggga caatgttagc gtggtgctcc atctgactga tgatgatgtt
     5461 atcgcccgcc cgcacattgc tgttgcccca gctattggcg accagattga tcccttccgt
     5521 cgtgccgcgg acgaacacca gctcttccgc cgaacgggca ttaataaaca gcgatgcccg
     5581 cttgcgcacg ttctccattt tctcggtcgc ctgggcgctt aaggtatgaa taccgcgatg
     5641 caccgccgcg tagccatgac gataaaactc ggcctcggcg tcaatcacct ggctcggttt
     5701 ctgtgcactg gcggcgctgt cgagataagc cagcggcaaa ccgtttacct cacgcgaaag
     5761 caccggaaag tcggcccgca ctttgtcgac ggaaaaagtc atcttgcacc tcctggcagc
     5821 cgttgaccga ttcgggccag cacctgctgt ttaagcccct catcacgcag tgcttccgtc
     5881 agttcggcag caaaggcgta aatgatcatc tgctgggcat cctgctgatt gatcccgcgc
     5941 gagcgcagat agaacatctg ttcatcatca atacgcccca ccgtcgcgcc gtggctgcat
     6001 ttcacatcat ctgcatagat ttccagctgc ggtttcgtat ccacttccgc cagtttgccc
     6061 atcagcagat tattgttggt catctgacca tccgttttga tggcgtgctg cgcgacgttg
     6121 atcaaaccgt taaataccgc gcggcctttg tcgctgacga tagttttgtg caactgtcgg
     6181 ctgttacaaa aacctttatt gtgttccagc caggtacggg tatcacacac ctcgtttttc
     6241 accggcatcg ccaggctatt gatccgcagc gtgctgtttt cgccattgag ttgcgtactg
     6301 gtgttgtgtc gtaacactgc gccacccagc aggaaactat ggctaaatgc ggtggcatcc
     6361 tcagccagca acaaatcgtt atgagcaaag tggtgactga gcgggttttc aaacgccagc
     6421 ttgatatgct gcaagtgggc gttcgctgcg acattgatag tgaaccgtgc cccggtaaaa
     6481 tgacgagcat cattaaggct gacaaaatgt tcgatcaccg ttgcttcggc accttccgcc
     6541 agatccagat gatgccggta atgggcagtg ttcacctctt cacctgccac gccctgggtg
     6601 atatacatta acagcaatgg ctttgccggc cgttgaccgc gcttcacggc gatatgcgtc
     6661 acgctttgtg ccaggctttc cgtcaaatgc agaaacactt ccgcctgaat agcgtcgggt
     6721 aacccctgac ggtcgtcgtt aatgctcact tcatatccgc tgccttcaat tgcatcgctc
     6781 agcgcgggca cgtaacgtcc atcgacaaac accagccgca cggcgtctaa cgttaacgct
     6841 aaggcatcac gctgctgtgg ggatatctcc cccgcaatgc tgacaaactg gctattggtc
     6901 agcccttcca gcgacgtata tttccagttt tcatgtttac gtgtcggcag tccggtacgc
     6961 agcaattgtt gtaaatgctg ctgtgcttgc ggggagcgtt ttgtcccttc agcttcaaac
     7021 aagtgatgcc actgttgcag cgcgttactg ctgttcggta agccagccat aaccctgctc
     7081 ctccagttgt ttgaccaacg tgaaatcgcc ggatttcaca attcgtccct gatatagcac
     7141 atggacgtaa tcaggcttga tgtagtcgag aatgcgttgg tagtgcgtaa caatgatgaa
     7201 tgagcgcttg ccatcacgca gggagttcac gccatcggcg accactttta atgcgtcaat
     7261 atccagcccg gagtccgact catcaagaat gcataactcc ggttccagca ccgccatttg
     7321 caaaatatcg ttgcgctttt tctcgccgcc ggaaaaacca acgtttaccg aacgggttaa
     7381 taaatcttcc ggcatcttca ggagagcgat tttctcttcc atcaaatcct gaaaatcaaa
     7441 gcggtcgagc gtttcctggc cgcgatagct gcgcactgca ttaagtgccg tttgcaggaa
     7501 aaactggtta ctgacgcctg gaatctccac cggatactgg aaggccataa agatgccttc
     7561 gcctgcacga tcttccggcg acagtgcaag caaatctttg cctttgaact caaccgtgcc
     7621 gcccgtcact tcataatctt cgcgcccggc aagcgttgcc gataaggtac ttttgcccga
     7681 accgtttggc cccataatgg cgtgaacttc gccgggacga acggcgaggc ttaatccacg
     7741 caggatagct ttatcttcca cgctgacgtg taaatcttta atacttaaca tgtttattcc
     7801 ttatccgacg ctgtgttcaa gactgatcgc gaggagtttt tgtgcttcaa cggcaaattc
     7861 cagcggcagt tctgagaaca cgtctttgca gaaaccgtta acaatcatcg agatggcgtc
     7921 ttcttcgctg atcccgcgtt gcaggcagta aaacagttga tcttcaccaa tacgtgatgt
     7981 cgttgcctcg tgctccagtt gtgcgctgtt attgcgacat tcgacatacg ggaaggtatg
     8041 cgccccacaa ttagcgccaa tcagcattga gtcgcactga gtgaaattgc gcgcattggt
     8101 tgccgtcggc atgattttca ctaagccgcg ataactgttc tgactatgtc cggcagagat
     8161 ccctttcgag ataatggtcg atttggtgtt tttaccgatg tggatcatct tggtgccggt
     8221 atccgcttgc tgatgaccgc tggtcagcgc cactgagtaa aactcaccaa tggagttatc
     8281 gccgcgcaaa atgcagctgg gatatttcca cgtaatcgcg gacccggttt ctgattgcgt
     8341 ccatgacatt ttgctgtttt cgccttcgca caaagcacgc ttggtgacga agttgagaat
     8401 accgccggtg ttgttatcgc cagggaacca gttttgtacc gtggaatatt tcacctcggc
     8461 gtttttatgg atgatgactt ccaccactgc cgcgtgtaac tgatagctgt cacgcaccgg
     8521 agcggaacag ccttcaatgt agctgacgta gctgtcttcg tcggccacca gaatggtgcg
     8581 ctcaaactgc ccggtttttt ccgcgttaat gcgaaaatag gtggaaagtt ccatcgggca
     8641 gcgcacgcct ttaggcacat aaataaacgt accgtcagag gctaccgccg cattaagcgc
     8701 ggcaaagaag ttgtcattcc ccggcaccac ggtgccgaga tatttacgca ccagttccgg
     8761 gtgatcgtgg atcgcctcac caaaggaaca gaaaataatt ccctgctccg ccagtttttc
     8821 gcgataagta gtggcaaccg aaacagagtc gaaaatggca tccaccgcca cctctttgcc
     8881 ttcccgcacg ggaacgccca actgctcaaa cgccgcctcc acctctttac ttaaaaaggc
     8941 gttcgcgcca gtttgctgca ccgcgccagg ttcagacgcg caagtgtcgt cacaattacc
     9001 gcacgatggt gctgagtagt agctgtaatc ctgataattc agcttgtcgt agtgcgcttt
     9061 caaccagtgc ggttcttcca tctccagcca tgcgcgatag gcgtttagac gaaactccag
     9121 catccactcc ggctcattac gcttcgccga aattgcgcgc accacctctt cgtttatccc
     9181 ctttgccagc tcatcggtgg ctaactgggt gaagaatcct tctttataat tcagcgggcc
     9241 gccggtccag gttttgacat cgtcagttgc ttcagtatta cgagacatag taccgcctat
     9301 accccaaagc tttcgccaca gccacattca ttctgggctt tagggttgtg aaatttgaat
     9361 atctgattaa gtccttcacg aacgaaatcg acttccgtgc catcaataaa cggcatcgct
     9421 tgcagcggga caaacagctt cgcgccgtcg tgttcaaaca gcagatcgtc tttgtccggc
     9481 tcgctaacac tgtcgagcac atagccaaag cccgcgcagc ccgtttgctt cacgcctaaa
     9541 cgcacgccga ccatacccgg ctgctttgcc accagctcac ggatgtgtat cgccgctgcg
     9601 ggtgtcagcg ttaagccttg ccaggcgaaa tcttgtgggt taaaggttcc tgaatgcatg
     9661 tccatcgatt tacctcactt catcgctttc agcgtataac agcatgttgg tgataatgat
     9721 tatcagttca acccagcaaa cgcaggggct ttaccgtaaa acatgctttt tgcctgcttt
     9781 taataagcat agaccctgat gtgtgggtta acaggcacgc taagaattag cgtatctcat
     9841 tgttagataa tggttattat ctaaggagca ttaaggctgt gatgaaaaag aaaaagttgt
     9901 attaaaatga ctatttaaga gataggtaaa aaagtgcagc gttcagaaat aagaaaaccc
     9961 ttaagtctgt gcgacacagg cttaagggtt tctaccccat ccggcgctta tctccggcac
    10021 tctcagtggc ttagctcttg aaggggcgat aagaataatc tcataaagct aacccgccgt
    10081 tttaacacaa actgcgatta gtattatttt tgaacaatat caggcggtag ataagcagta
    10141 ttaagaaggt catcgaacct ggacggaggt taatccaggt cgatttggcg aacttgcggc
    10201 attaagtcag gatcaatgca cgcccagacg ccaggcaaag tagatttctt cttttaattc
    10261 agcagaagag agagtaagca ggtcagcaaa ttcaagttct agttgtttca gacgtttgag
    10321 atattgggca ggtgaaagat tgctctggtc acggcgtaaa aattcaatgg ccagctgggt
    10381 gggatcaagt tgagtagaca tagcatcctc gcttttagac aagacgtgta cagtatacca
    10441 ccgtttactg tgcagataat gaccaaaagc aatatgcgtc acacttttct ggtgacaacg
    10501 tcacaaaatg gcggtcgtca atcgtgacga acagcacaaa cgccctttct catcgaagat
    10561 ttcaatctgc cagacctggt gacgcgaacc gagatgcaac ggtttacata tgccgcgcac
    10621 ccgcccttct cgtgccgagc ggacgtgatt agcattgatt tccagaccaa ccactttttg
    10681 ctcaccttcg gtacataaat aaccggcaac ggaaccgata ctttcggcca gtaccacgga
    10741 tgctcctcca tgcagcaacc cgaaaggctg ctttgtccgc gagtctactg gcattgtcgc
    10801 ttcaagggtg tcatcaccaa tatgttcaaa gcgaatatcc aggaacccca ccatgtttcc
    10861 ttcacccata gcattcagtg cttccagggt gattttccgt ttccatatca tttaataatc
    10921 tccagtaaag cctgcacagg atggcgtacc cccgtgcctt caacccgttt tacctggcta
    10981 cggcaggaat atccggtcgc cagacagcgg ttacgcggca gtcgctgcat agcctgatgc
    11041 caggataact catagatccc gagcgaattt tcatggtttt tcgcttcatg tccgtaagtc
    11101 cctgccatgc cgcagcaacc cacgctgaca ttttccagtt tcgcgccaaa acgggcaaat
    11161 atcgcggccc attgtgctgg cgcacccggc aaggcggtaa cttcggtaca gtgaccaaag
    11221 aaataccatg attcaccgct gactgtagcc acaggctgtg actcaagtgc gcttgccagc
    11281 cattcattcg ccagtaagac gttaaactcg ccacgctcct cgcccagcgc cagtttatat
    11341 tcatcgcgat aacaaagtac cagcgccgga tcgacgccca ccattggcat acccagcttc
    11401 gccatacggt tgaggaaatc cgccgtcttt ttcgccgtct tcgcaaaacg attaagaaaa
    11461 cctttaatat gctgggcttt gccatttggc gaaaatggca gtaacacagg ctggaaacct
    11521 aatttttcga ccagacggac aaaatccgcc accacttgcg catcgtaata gctggtaaag
    11581 gggtcctgca ccaccaacac tgtgcgcgct ttctgctctg cattgagaga ttcaagctgt
    11641 tccagcgtca tgtttgccga gcgatgcccc accatttgtt gttgtagcga ggggaccgac
    11701 agcagcggca aatcaaccat gccgatatgt ttttccgaga gtttgcgcac cagcggctgg
    11761 ttaatgaaga agttaaaggt tttcggcgcg cgtgccatca gcggcgcgta gctctcgacc
    11821 gtagcgacga ggtggtcgcg cagcgggcgt aaataacggg tgtgatagag ctgcagaaaa
    11881 cgagagcgaa actccggcac atcaattttg atggggcaca gggtcgaaca cgctttacag
    11941 gccagacagc ccgacatcgc ctctttgact tcgtgtgaga agtcatattc gcctttattc
    12001 gcatgccagc tattgcgcgt gcgggcaatt aacgtccgca aactgacgcc ggattcaggc
    12061 agttcttgtt ccagtttgag tggatcaacg ccgcgatccg ccaacaaacg cagccattca
    12121 cgcaccagcg ttgcgcgccc tttcggtgaa tgaatccggt tctgggtgat cttcatcgac
    12181 ggacacatcg gactacgggc atcaaagttg aagcataaac cgttgccgtt acactccatc
    12241 gcaccgcgcc actgctggcg taccgcaatg gggatctgcc gatcgaatgt accgcgcttc
    12301 accgcgtcca ctttcatcat cggcgcatcg agaccttctg gcgggcaaat cttccctggg
    12361 ttgagtcggt tatgcgggtc aaatgccgct ttcactttgc gcagttctgc aaaaagttcc
    12421 tcaccgaaaa acgccgggct gtattcagcg cgaaaacctt tgccgtgctc gccccacaac
    12481 aaaccaccgt atttcgcagt cagcgccacc acgtcatcag agatttgctt catcaaaatc
    12541 tcttgttgag gatcgcacat atccagctct ggacggacgt gcaagacacc tgcgtcgacg
    12601 tgaccgaaca taccgtagct taagccgtgg ctgtcgagca gcgcgcgaaa ttcagcaata
    12661 taatccgcca ggtgttccgg cggtacgcag gtatcctcag caaacggaat tggcttagcg
    12721 gcacctttgg cattgccaag cagaccaacg gcttttttgc gcattgcata gatacgttca
    12781 acccccgcca gctcacggca cacctgccag ccgatgacac ctgcttgatg actggcgatc
    12841 agctcatcca accgcgcaca gagtgcattt acccgctcat caatcagcgc ctcatcatca
    12901 ccagcaaatt ccacaatgtt cagcccgagc atctcttggt caggcacatc ggtaatcaac
    12961 tcgctgacgg aatgccagac aatatcttcc cgcgccagat tcagcacttt tgagtccacc
    13021 gtctctaccg aaagcgcccg cgcctcaacc ataaacggcg cgttacgcag cgcagagtca
    13081 aaagagtcat atttgacgtt caccagacgg cgcactttag gcaagcgcgt aatatccagc
    13141 cgcgcttcgg taataaaggc cagcgtccct tctgaacccg tcagaatgcg cgtcaggtcg
    13201 aactcggtca tctcatcgtt aaagacatga cgcagatcgt aaccggtaag aaagcggtta
    13261 agtttgggga agttgtcgat aattaactgg cgttgctgac ggcaacgttg ataaaccgtg
    13321 ttataaattc gcccgattgt ggtattggat ttacccagcg tttccgccaa ttcgacgggt
    13381 aaaggttgcg tatcgagaac atcgcccccc aacaacaccg cgcgtacgcc aagtacgtga
    13441 tctgacgttt tgccatagac cagcgatccc tgaccggatg catcggtatt gatcatccca
    13501 ccgagcgttg cccggttgct ggtcgaaagt tccggcgcaa aaaagtagcc gaacggtttc
    13561 aggtactgat tgagttgatc ttttatcacc ccggcctcaa cgcgcaccca gccctcttca
    13621 gggttaattt cgatgatgcg gttcatatgg cgggacatat caacaataat cccctggttg
    13681 agcgcctgac cgttagtgcc ggtgccgccg ccgcgggggg taaagatcag cgatgaatag
    13741 cgttcctgcg cggcaagacg ggcgatcagc gccacatctg cggttgaacg cggaaatacc
    13801 accgcatcgg ggagaagttg gtaaatactg ttgtcggtcg acattgtcag acgatcggca
    13861 taacttgtcg ccgtatcgcc ggtaaaacct tgttgctcca gctcttgcaa aaaattaagc
    13921 accagttgaa cgacgccggg tgcctgagaa atctgtggaa tcattatatt gcccctttcc
    13981 tgcggtctgt gatgtaggtc gatacactat tctttcaggc ggctgcaata gcgcactgaa
    14041 aggtgatgtt tatttactct atggatttcg agttgcagga aggcggcaag cgagtgaact
    14101 ccaggagctt acaatagtaa gtgactgggg tgaacgaacg tagccgcagc acatgcaact
    14161 tgaaatacga cgagtaaatc gtttgcgtgt tgcctgagtt gttgtaccac atttttttct
    14221 aacacgccca tcagaattaa gggcagaatc ggcctgttaa aaaccgctga aattgctcat
    14281 cattatgcag gtgagtttcg cgtgttcacg tcgcgtcgac gatttgacgc acaaaaaagg
    14341 tgaaaagtag ttatggtaaa tgttcgtcag cccagggatg tcgcacaaat tctgctttcg
    14401 gtgctgtttt tagccatcat gattgtggca tgtctgtgga ttgttcaacc ctttattctc
    14461 ggctttgcat gggccggtac ggtggttatc gccacctggc cggtattgtt acgtttgcaa
    14521 aagatcatgt ttggccgccg ctctctcgcc gttctggtga tgacgctgtt attagtgatg
    14581 gtgtttatca tccctattgc tttgctggtt aacagtatcg tcgacggcag cggcccgcta
    14641 attaaagcca tttccagcgg cgacatgacg ttacccgatc tggcgtggct taataccatt
    14701 ccggtgattg gcgcgaagct gtatgcaggc tggcacaact tgctggatat gggggggacg
    14761 gcgatcatgg cgaaagtccg cccttatatt ggcaccacca ccacctggtt cgttgggcag
    14821 gcggcgcata tcgggcgctt tatggtgcat tgtgcgctga tgcttctctt cagtgccctg
    14881 ctgtactggc gcggtgaaca ggtggcacaa ggcattcgcc attttgcaac ccgtctggca
    14941 ggcgttcgcg gagatgccgc cgtactgctg gcggcacagg ctatccgcgc ggtggcgctg
    15001 ggtgtggtgg tgacggcgtt agtacaggca gtgcttggcg gtatcggcct cgccgtatcc
    15061 ggcgtacctt atgcaacgtt gctaacggtg ttaatgatcc tctcctgcct tgtccagctt
    15121 ggcccgttgc cggtactgat tccggcgatt atctggctct actggactgg cgataccacc
    15181 tggggaacgg tattgttagt gtggagcggt gtggttggca cgctggataa cgtcatccgc
    15241 ccaatgttaa ttcgcatggg tgccgattta ccgctgatcc tgatcctctc tggtgttatt
    15301 ggtggtttga ttgctttcgg gatgatcggt ctgtttattg gtccggttct gttagccgtt
    15361 tcctggcgtc tgtttgccgc gtgggtggaa gaagtcccgc cgccgacgga ccaaccggaa
    15421 gaaattctcg aagaacttgg cgaaatcgag aaaccgaata agtaatttct catcaggcgg
    15481 ctctgccgcc tgattgttaa cccccgctaa ttgatatttg cttgctcttc cccatatttt
    15541 cctgcttacc gccattcagc tggtagtacc tgtcgcaaat tctttacagt ttttaaacta
    15601 atgagacgaa tctgatcgac gcaaaaagtc cgtatgccta ctattagctc acggttataa
    15661 atcaacatat tgatttataa gcatggaaat cccctgagtg aaacaacgaa ttgctgtgtg
    15721 tagtctttgc ccatctccca cgatgggctt ttttttaaca tttttccact tcgctacctc
    15781 gcccctcact ctttccaata atgttgcaca agatactgtg actctcttca agccgtcagc
    15841 aggctgataa tgttatttat attttattgt ttatttcatg cagccattac acgatgaacg
    15901 cttatgaact ccaggcactc cgacatattt ttgccatgac tattgatgaa tgcgcacctg
    15961 gattgcccag accggtgaca gtgaaagctg gcgtcagtgg gaaaatggca agtgtgccat
    16021 tcctgatcgt gtagtcgagc aactgttggc tatgcgtcag caaagaaaaa aacatcttca
    16081 tgccatcata gagaaaataa ataaccgcat cggcaacaac accatgcgtt ttttccccga
    16141 cttaaccgca tttcaacgag tctaccctga tggcaatttt attgactgga agatctatca
    16201 atcggtagcc gctgaaggta atgctgttga aaagcaaatt ccccagccag ttggtggacg
    16261 ccagcgtagc taatgaatta ccgcaaatga acagcaaacc gttagtctgg ctggaaggtg
    16321 tttcatcggt actgttcggt gtagccgcat tctcgacctt ttatgtgatt gtggtgtgga
    16381 tgcccaaata tgcgatggct tttgctggta tgtcagaagc tgaggcatta aaaaccatct
    16441 cttattacag tatgggctcg ttggtctgtg tctttatttt tgccgcacta ctgaaaaaaa
    16501 tggtccggcc catctgggct aatgtattta actctgcact ggcaacaata acagcagcca
    16561 ttatctatct gtacccttct ccactggtgt gtaatgccgg cgcctttgtt atcggtttct
    16621 cagcagctgg cggcatttta cagctcggtg tttcggtcat gtcagagttt ttcccaaaaa
    16681 gcaaagccaa agtcaccagt atttatatga tgatgggtgg actggctaac tttgttattc
    16741 cgctgattac cggttatctg tcgaacatcg gccttcaata tatcattgtt ctcgatttta
    16801 ctttcgcgct gctggccctg attaccgcaa ttattgtttt tatccgctat taccgcgttt
    16861 ttattattcc tgagaatgat gtgcggtttg gcgagcgtaa atttagcacc cggttaaaca
    16921 caattaagca tagaggttaa aggagttaat tatggatgtt accgcaaaat acgaattgat
    16981 tgggctgatg gcctatccta tccgccacag tttatcgcct gaaatgcaga ataaagcctt
    17041 agaaaaagcg ggattgccat ttacctatat ggcctttgaa gtggataacg atagttttcc
    17101 cggagcaatt gaaggattaa aagctctaaa aatgcgcgga actggtgtat caatgccgaa
    17161 caaacaactg gcttgttaat atgttgatga attaacgcca gcagccaaac tggtgggtgc
    17221 catcaacacc atcgttaatg atgatggcta cctgcgcggc tataacaccg acggcacggg
    17281 ccatattcgc gccattaaag agagcggttt tgatatcaaa ggcaaaacaa tggtgctgtt
    17341 aggggccgga ggtgcctcaa cggctattgg cgcgcagggg gcaattgaag gtttaaaaga
    17401 aattaaactc tttaaccgtc gggatgagtt cttcgataaa gccctcgcct tcgcgcagcg
    17461 ggttaacgaa aacaccgatt gtgtcgtcac ggttaccgat ctcgccgatc agcaagcctt
    17521 tgctgaagcc ctggcttccg ccgacatttt aaccaatggc acaaaagtgg gtatgaaacc
    17581 ccttgagaat gaatcattag ttaatgatat cagtctgtta catccgggac ttctggtcac
    17641 tgaatgcgtg tataacccgc atatgacgaa gttattgcag caggcgcaac aagctggttg
    17701 caaaacgatt gatggatacg gcatgttgtt gtggcaaggg gctgaacagt tcacgttatg
    17761 gactggcaaa gatttccctc tggaatatgt taaacaggtc atggggttcg gtgcctgaca
    17821 ggctgaccgc gcgcagaaag ggtaaaaaaa tgaaaaccgt aactgtaaaa gatctcgtca
    17881 ttggtacggg cgcacctaaa atcatcgtct cgctgatggc gaaagatatc gcccgcgtga
    17941 aatccgaagc tctcgcctat cgtgaagcgg actttgatat tctggaatgg cgtgtggacc
    18001 actttgccga cctctccaat gtggagtctg tcatggcggc ggcaaaaatt ctccgcgaaa
    18061 ccatgccaga aaaaccgctg ctgtttacct tccgcagtgc caaagaaggc ggcgagcagg
    18121 cgatttccac cgaggcttat attgctctca atcgtgcagc catcgacagc ggcctggttg
    18181 atatgataga tctggagtta tttaccggcg atgatcaggt taaagaaacc gtcgcctgcg
    18241 cccacgcgca tgatgtgaaa gttgtcatgt ccaaccatga cttccataaa acgccggaag
    18301 ccgaagaaat cattgcccgt ctgcgcaaaa tgcagtcctt cgacgccgat attcctaaga
    18361 ttgcgctgat gccgcaaagt accagcgatg tgctgacgtt gcttgccgcg accctggaga
    18421 tgcaggagca gtatgccgat cgtccaatca tcacaatgtc aatggcaaaa actggcgtaa
    18481 tttctcgtct ggctggtgaa gtatttggct cggcggcaac ttttggtgcg gtaaaaaaag
    18541 cctctgcgcc agggcaaatc tcggtaaatg atttacgcac agtattaact attttacatc
    18601 aggcataagc aataatattt cggcgggaat atcctccccc gccgaactaa aaaaaatata
    18661 ttcaaccgta tttaataaaa atatttcgtg agtctctgtg cgctaaatat ccatctggcg
    18721 tagggaaaat cacacctgaa tcagaaatta acaatgaaac ctgtaaaacc acctcgtatt
    18781 aatggacgag tgccggtcct gtcggcacag gaagcggtga attatattcc cgacgaagca
    18841 acactttgtg tgttaggcgc tggcggcggt attctggaag ccacgacgtt aattactgct
    18901 cttgctgata aatataaaca gactcaaacg ccacgtaatt tatcgattat tagtccaaca
    18961 gggcttggcg atcgcgccga ccgtggtatt agtccgctgg cgcaagaagg tctggtgaaa
    19021 tgggcattat gtggtcactg gggacaatcg ccgcgtattt ctgaactcgc agaacaaaat
    19081 aaaattattg cttataacta tccacaaggt gtacttacac aaaccttacg cgccgccgca
    19141 gcccaccagc ctggtattat tagtgatatt ggcatcggga catttgtcga tccacgccag
    19201 caaggcggca aactgaatga agtcacgaaa gaagacctga ttaaactggt cgagtttgat
    19261 aacaaagaat atctctatta caaagcgatt gcgccagata tcgccttcat tcgcgctacc
    19321 acctgcgaca gtgaaggcta cgccactttt gaagatgagg tgatgtatct cgacgcattg
    19381 gttattgccc aggcggtgca caataacggc ggtattgtga tgatgcaggt gcagaaaatg
    19441 gttaagaaag ccacgctgca tcctaaatct gtccgtattc cgggttatct ggtggatatt
    19501 gtggtggtcg atccggatca aagccaactg tatggcggtg cgccggttaa ccgctttatt
    19561 tctggtgact tcacccttga tgacagcacc aaacttagcc tgcccctaaa ccaacgtaaa
    19621 ttagttgcga ggcgtgcatt attcgaaatg cgtaaaggcg cggtggggaa tgtcggcgtc
    19681 ggtattgctg acggtattgg cctggtcgcc cgggaagaag gttgtgctga tgactttatt
    19741 ctgacggtag aaacaggtcc gattggcgga attacttcac aggggatcgc ctttggcgcg
    19801 aacgtgaata cccgtgccat tctggatatg acgtcccagt ttaattttta tcacggtggt
    19861 ggtctggatg tttgttattt gagttttgct gaagtcgacc agcacggtaa cgtcggcgtg
    19921 cataaattca atggcaaaat catgggtacc ggtggattta ttgatatcag tgccacctcg
    19981 aagaaaatta ttttctgcgg cacgttaacc gcgggcagtt taaaaacaga aattgccgat
    20041 ggcaaattaa atatcgtcca ggaaggacgg gtgaagaaat ttattcagga actaccggaa
    20101 attactttta gcggaaaaat cgcgctcgaa cgggaactgg atgttcgtta catcaccgaa
    20161 cgtgctgtat tcacgctgaa agaagacggc ctgcatttaa tcgaaatcgc ccctggcgtc
    20221 gatttacaaa aagatattct cgacaaaatg gatttcaccc cagtgatttc gccagaactc
    20281 aaactgatgg acgaaagatt atttatcgat gcggcgatgg gttttgtcct gcctgaagcg
    20341 gctcattaac aggagtatca cgatggattt ttctttaact gaagaacaag aactgctgct
    20401 ggccagtatt cgcgaactga ttacgactaa ctttgcggaa gagtatttcc gcacctgcga
    20461 tcaaaacggg acatatccgc gtgagtttat gcgggcgctg gcggataacg gcatttctat
    20521 gcttggcgtg ccggaagagt tcggtggcat ccctgcggat tacgtcaccc agatgctggc
    20581 gctgatggaa gtgtcaaaat gcggtgctcc ggcatttttg attaccaacg gtcaatgtat
    20641 tcacagtatg cgccgtttcg gttctgcaga gcagctacgt aaaacggcag agagcaccct
    20701 ggaaacgggt gatcccgcct atgccctggc gttgacggag ccaggcgcag gctcagacaa
    20761 caacagtgcc actaccactt acacgcgtaa aaacggcaag gtttacatca acggacagaa
    20821 aacctttatt accggtgcga aagagtaccc gtatatgctg gtgttggcgc gcgatccgca
    20881 accgaaagat cccaaaaaag ccttcaccct gtggtgggtc gactccagta agcccggcat
    20941 taagattaac ccgctgcata aaatcggctg gcatatgctc agcacctgcg aagtctatct
    21001 cgacaacgtg gaggttgaag agagcgacat ggtgggcgaa gaaggaatgg gtttcctcaa
    21061 tgtgatgtac aactttgaga tggagcgcct gatcaacgcc gcgcgcagca ccggctttgc
    21121 cgaatgcgcc tttgaagatg ccgcccgcta tgccaaccaa cgtatcgctt ttggtaagcc
    21181 cattggtcat aaccagatga tccaggaaaa actggcgctg atggcgatta agatcgacaa
    21241 catgcgcaac atggtgctga aagtggcatg gcaagccgat cagcatcagt cactgcgcac
    21301 cagcgcggcg ctggcaaaac tgtattgcgc acgtaccgca atggaagtca ttgatgatgc
    21361 gattcaaatc atgggcggtc tgggctatac cgatgaagcg cgcgtctccc gcttctggcg
    21421 tgatgtccgt tgtgaacgta tcggcggcgg tacagacgaa attatgattt acgtagcagg
    21481 tcggcagatc ctgaaagact atcagaacaa ataatctgca ggcggcgcag cttcttaaca
    21541 aactgcgccg ccagatttat ccaacaagac ttaccggttg aggaaattca gataggattt
    21601 cttgttccgc aaaacagttt ttaaattgtc tacggtaatc gctgggcgaa caaccgacat
    21661 ggcgcaaaaa cagtttggca aagtgatcga cattttcata acccacacgc caggagatct
    21721 ctgcctgtga taattcagta ttagtgagtg accattttgc ttccgtcata cgccgttgaa
    21781 taacatagtt aataggggaa atacgatact ctttggtaaa ttcatggcaa atataactga
    21841 cgctggcacg aaattttttc gataactgtt ctaaagtgat tttttcgcga taattattac
    21901 tcagatagaa aagaatatct tttatcagaa catctttttt aatatacccc tgctccgaac
    21961 gataagcatt tttaaaattt tcgtagtaaa gaatggctaa cgtataggca aatgcatccc
    22021 ataacgaaga tgtttggcta tttttacttt gcggcaaaat cacacttagc tcattaaata
    22081 aggtttttat gacttctttt ccctgccccg cggcaattac cggacaagaa tgcggttgca
    22141 gtagctgatt ttcctcagcc ccctgaaact gaaagccgta cagcgcacag gtacacgtcg
    22201 ttgccggatc gttaacgtca gaggccaccg catgcagcct gccgcgttct atcaccacaa
    22261 tgtcatccgc atgtgcgaca tataacgaag aatcgatggt aaaccttgca acccctttct
    22321 tgacgtaaat caactcggtt tcattgtcat gaacgtgatg tccggactcc cattttggat
    22381 catcgctaaa tgcaaaacgt gaaagccgtg gcgttttacc ggcgacaaac agcgtttcac
    22441 tggcgttatc aaaacagcgt tgatacatga caacctccct attccatgag caagcaaaaa
    22501 caatatatgc cggataaaat acggcgtgta ttgcggttat acaaccgcgt ttagcgagag
    22561 ctaaacaaga ttatttacac tgaatgcaag attgtacggt catggaataa ctatattgcc
    22621 gcaaattgca cttttgtttt agcgatcgca tttttttgca agattgttgg caaggaaaac
    22681 agcttgctcc gtcgaaaacc cccaccgcta tcgcacacta ttttcaggcc atttttacct
    22741 tccatcggag atggttccgt atgcgactca caggagaaat catgaaaata ataacctgct
    22801 ttaagctggt gcctgaagaa caggacattg ttgtcactcc agaatacacc ctgaatttcg
    22861 acaatgccga cgccaaaatc agccagttcg atctcaatgc cattgaagct gcaagccagc
    22921 tcgcaacaga tgacgatgag atagccgcgc tgaccgttgg cggctcattg ttgcagaact
    22981 cgaaagtgcg cagtgcgcaa agatgtgcta tcccgcgggc cgcacagcct gtatttggtg
    23041 caggatgcgc aacttgaaca tgcactgcct ctcgataccg caaaagcgct ggcggcagca
    23101 attgaaaaga tcggcttcga tttactgatc tttggtgaag gttccggcga cctttatgcc
    23161 cagcaggttg gcttgctggt cggagaaatt ctgcaacttc cggtgattaa tgcagtgagt
    23221 gctattcagc gtcagggtaa tacactggtg attgaacgca cgcttgaaga tgatgttgaa
    23281 gttattgaac tctctgttcc agccgtgctc tgcgtcacct ccgatattaa cgtgccacgc
    23341 attccttcga tgaaagccat tctcggcgcg ggtaaaaaac cggtaaatca gtggcaggca
    23401 agtgatattg actggagcca gagcgcgcca cttgctgaac tggtcggcat tcgcgtaccg
    23461 ccgcaaacag aacgtaagca catcattatc gataacgatt cgccggaggc cattgccgag
    23521 ctggcggaac atctgaagaa agccctgaac tgaagcctac ggagaagaaa cgatgagtca
    23581 attaaacagc gtctgggtct ttagcgataa tcctgaacgt tatgctgaac tgtttggcgg
    23641 cgctcagcaa tggggccaac aggtgtatgc cattgtacaa aataccgacc aggcgcaggc
    23701 agttatgcct tatggtccaa aatgtattta tgttcttgag caaaacgacg cgctgcaacg
    23761 cactgaaaat tacgccgaaa gcattgctgc cccgctgaaa gataaacacc ccgctatgtt
    23821 gctgttggcc gcgacgaaac gtggtaaagc tctggcagca cggttaagtg tgcaactgaa
    23881 tgcggcgctg gtgaacgatg ccacggcggt ggatattgtc gatggtcaca tttgcgccga
    23941 acaccggatg tatggcgggt tagcgttcgc tcaggaaaag atcaacagcc cgctggcgat
    24001 cattaccctt gcacccggtg ttcaggaacc gtgcaccagt gatacctctc atcagtgccc
    24061 gacagaaacg gtaccttatg ttgctccgcg tcatgaaatt ctctgtcgcg aacgccgtgc
    24121 gaaagccgca agcagcgtgg acctgagcaa agcaaaacgt gtggttggcg tcggtcgtgg
    24181 tctggcggcg caggatgacc tgaaaatggt ccacgaactg gcggcggtgc tgaatgctga
    24241 agtcggctgt tcacgtccaa ttgccgaagg cgagaactgg atggagcgtg aacgttatat
    24301 cggtgtctcc ggcgtgttgc tgaaatccga tctctacctg acgctgggga tctccgggca
    24361 gatccagcat atggttggcg gcaacggcgc aaaagtgatt gtcgccatca ataaagataa
    24421 aaatgcgcca atcttcaatt atgccgacta cggtctggtg ggcgatatct acaaagtcgt
    24481 ccctgccctg attagccagt tgagccgcta attccccttt caaccacatc tcccgctgta
    24541 aacgcagcgg gaagggagca taacgcatgt cggatgacaa atttgatgcc attgtggtcg
    24601 gtgcggacgt tgctagtagc gttgccgcac tggtcatggc gcgagccgga ctggatgtcc
    24661 tggtgataga acgcggcgac agtgccggat gtaaaaacat gaccggcggg cgtctttatg
    24721 cccacacact tgaagcaatc attccaggct ttgcagtatc agcgccggta gaacgcaagg
    24781 tcacacgcga gaaaatctcc ttcttaaccg aagaaagcgc cgttaccctc gattttcacc
    24841 gcgagcaacc agatgttccg caacacgcat cttataccgt attgcgtaat cgtctggacc
    24901 cgtggttgat ggaacaagcc gagcaggcgg gcgcacagtt tatcccgggc gttcgcgtcg
    24961 atgcgttggt tcgtgaagga aacaaggtca ctggcgtgca ggccggggat gatattctcc
    25021 aagcgaatgt ggtggttcta gctgatggcg taaactcgat gcttggccgc tcgctgggaa
    25081 tggttcccgc ttccgatccg catcattacg ctgttggtgt taaagaggtt attggcctca
    25141 caccagaaca gatcaacgat cgctttaata ttacgggcga ggaaggtgcc gcctggctgt
    25201 ttgccggctc cccttctgac ggcctgatgg gcgggggatt tctctatacc aacaaggatt
    25261 ccatatcctt ggggctggtt tgtggattgg gtgatatcgc ccatgcgcaa aaaagcgtgc
    25321 cgcaaatgct ggaagatttt aaacaacacc ccgccattcg cccactaatt agcggcggca
    25381 aactgcttga atattccgcg catatggtgc cagaaggcgg tctggcaatg gtgccgcaga
    25441 tggttaacga tggcgtgatg atcgttggtg acgccgcagg cttctgcctg aatttgggtt
    25501 ttacagttcg tggcatggat ttagccattg catcggctca ggctgccgcc acaacggtga
    25561 tcgccgccaa agaacgcgag gatttctccg ccagcagtct ggcgcaatac aaacgtgagc
    25621 tggaacaaag ctgcgtcatg cgcgatatgc agcatttccg caagatcccg gcgctgatgg
    25681 aaaacccgcg cctgtttagc caatactcac gaatggtcgc cgacatcatg aacgagatgt
    25741 tcaccattga cggcaaacca aaccagccgg tacgcaaaat gatcatggga cacgcgaaga
    25801 aaattgggct gatcaacttg ctgaaagatg gcattaaggg agcaaccgcg ctatgagcca
    25861 gaacgctacg gttaacgtcg acatcaaatt aggcgtcaat aaattccatg ttgatgaggg
    25921 ccacccgcat atcattctgg cggcaaatcc cgatatcaat gaattccgta aattaatgaa
    25981 agcttgccct gccggacttt ataagcagga tgacgccggc aacattcatt tcgattccgc
    26041 cggttgtctg gagtgcggca cctgtcgggt gctgtgcggc aacactattc tcgaacagtg
    26101 gcaatatccc gcaggcacct tcggtattga ttttcgctac ggctaatcat gcatcccaca
    26161 ggcccgcatc tcgggcctga tgttctgttt cgagagtcca aaatgaaagt gacattaacg
    26221 ttcaacgaac aacgtcgtgc ggcgtatcgt cagcaagggt tatggggcga tgcttcactg
    26281 gccgattact ggcagcagac cgctcgtgcg atgccagaca aaattgccgt ggtcgacaat
    26341 catggtgcaa cgtacaccta tagcgcgctc gatcacgccg cgagctgtct ggcaaactgg
    26401 atgttagcga agggtattga atcaggcgat cgcatcgcat ttcaactgcc tggctggtgt
    26461 gaatttaccg ttatctatct tgcctgcctg aaaatcggtg cggtttccgt gccgctgttg
    26521 ccttcctggc gggaagcaga actggtgtcg gtgctcaata agtgtcaggc aaaaatgttc
    26581 tttgcaccga cgttgtttaa acaaacacgt ccggtagatt taatcctgcc gctgcaaaat
    26641 cagcttccac aactacaaca aattgtcggc gtggacaaac tggctcccgc cacctcttcc
    26701 ctctcattaa gtccgattat cgccgacaat acctcactga ccacggcgat aacgacccac
    26761 ggcgatgaat tagctgcggt gctgtttacc tccggaaccg agggtctgcc aaagggcgtg
    26821 atgctaacgc ataacaatat tctcgccagt gagcgggctt attgcgcgcg actgaatctg
    26881 acctggcagg atgtctttat gatgcctgcg ccacttggtc acgcaacggg ctttctgcat
    26941 ggcgtaacgg caccattctt aattggcgct cgcagcgtgt tgttagatat tttcactcct
    27001 gatgcgtgtc tcgcgctgct tgagcagcag cgttgcacct gtatgctagg cgcaacgccg
    27061 tttgtctatg atcttttgaa tgtactagag aaacaacccg cggacctttc agcgctgcgt
    27121 ttctttcttt gcggcggtac cacaatcccc aaaaaagtgg cacgtgaatg ccagcagcgc
    27181 ggcattaaat tattaagtgt ttatggttcc acagaaagtt cgccgcatgc ggtggtgaat
    27241 ctcgatgatc ctttgtcgcg ctttatgcac accgatggtt acgctgccgc aggtgtagag
    27301 attaaagtgg tcgatgacgc acgcaagacc ttaccgccag gttgcgaagg tgaagaagcc
    27361 tcgcgtggcc ccaatgtgtt tatggggtat tttgatgaac ctgaattaac cgcccgtgcg
    27421 ctggacgaag aaggctggta ttgcagcggc gatctctgcc gtatggatga ggctggctat
    27481 ataaaaatta ccggacgcaa aaaagatatt attgtccgcg gcggcgaaaa tattagcagc
    27541 cgtgaagtgg aagatatttt attgcagcat cctaaaattc acgatgcctg tgtggttgca
    27601 atgcccgatg aacgtttagg tgaacgatca tgcgcttatg tcgtgctgaa agcgccgcat
    27661 cattcattat cgctgg
//
LOCUS       DADMJB010000037        27619 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.037, whole genome shotgun sequence.
ACCESSION   DADMJB010000037 DADMJB010000000
VERSION     DADMJB010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27619)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27619)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27619
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.037"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(174..704)
                     /gene="ppa"
                     /locus_tag="JN078_001443"
     CDS             complement(174..704)
                     /gene="ppa"
                     /locus_tag="JN078_001443"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001739810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HAY9040693.1"
                     /translation="MSLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDR
                     FMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGE
                     DAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAE
                     AAKAEIVASFERAKNK"
     gene            1014..1970
                     /gene="ytfQ"
                     /locus_tag="JN078_001444"
     CDS             1014..1970
                     /gene="ytfQ"
                     /locus_tag="JN078_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactofuranose ABC transporter
                     substrate-binding protein YtfQ"
                     /protein_id="HAY9040694.1"
                     /translation="MWKRLLVVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNV
                     AKSEAEKRGITLKIADGQQKQENRIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKD
                     AEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVG
                     ASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYA
                     HNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMIDGEANASVELTPNMAGPA
                     FDALEKYKKDGTMPEKLTLTKSPLYLPDTAKEELEKKKNMGY"
     gene            2110..2646
                     /locus_tag="JN078_001445"
     CDS             2110..2646
                     /locus_tag="JN078_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000205831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HAY9040695.1"
                     /translation="MTTDQHQEILRTEGLSKFFPGVKALDNVDFSLRRGEIMALLGEN
                     GAGKSTLIKALTGVYHADRGTIWLEGQVISPKNTAHAQQLGIGTVYQEVNLLPNMSVA
                     DNLFIGREPKRFGLLRRKEMEKRATELMASYGFSLDVREPLNRFSVAMQQIVAICRAI
                     DLSAKVLILDEPTASLDT"
     gene            2650..3612
                     /locus_tag="JN078_001446"
     CDS             2650..3612
                     /locus_tag="JN078_001446"
                     /inference="COORDINATES: protein motif:HMM:NF012235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HAY9040696.1"
                     /translation="MELLFGLMRQLRDRGVSLIFVTHFLDQSYQVSDRITVLRNGSFV
                     GCRETRELPQIELVKMMLGRELDTHALQRAGRTLLSDKPVAAFKNYGKKGTIAPFDLE
                     VRPGEIVGLAGLLGSGRTETAEVIFGIKPADSGTALIKGKPQNLRSPHQASVLGIGFC
                     PEDRKTDGIIAAASVRENIILALQAQRGWLRPISRKEQQEIAERFIRQLGIRTPSTEQ
                     PIEFLSGGNQQKVLLSRWLLTRPQFLILDEPTRGIDVGAHAEIIRLIETLCADGLALL
                     VISSELEELVGYADRVIIMRDRKQVAEIRLAELSVPAIMNAIAA"
     gene            3626..4648
                     /locus_tag="JN078_001447"
     CDS             3626..4648
                     /locus_tag="JN078_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313234.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAY9040697.1"
                     /translation="MPQSLPDTTTPKRRFRWPTGMPQLVALLLVLLVDSLVAPHFWQV
                     VLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVA
                     EVSLPIVLLSALGTGILAGLWNGILVAILKIQPFVATLILMVAGRGVAQLITSGQIVT
                     FNSPDLSWFGSGSLLFLPTPVIIAVLTLLLFWLLTRKTALGMFIEAVGINIRAAKNAG
                     VNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAILAVVIGGGSLMG
                     GRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQSQRFISLIKGV
                     RSRDKT"
     gene            4635..5630
                     /gene="yjfF"
                     /locus_tag="JN078_001448"
     CDS             4635..5630
                     /gene="yjfF"
                     /locus_tag="JN078_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418652.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease YjfF"
                     /protein_id="HAY9040698.1"
                     /translation="MIKRNLPLMITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAF
                     LGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVVGDFGLSPLLAFPLVLVMGCAFG
                     AFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGG
                     RLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLST
                     GLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQG
                     LIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQSSPVTRVNIAQR"
     gene            complement(5663..6661)
                     /gene="fbp"
                     /locus_tag="JN078_001449"
     CDS             complement(5663..6661)
                     /gene="fbp"
                     /locus_tag="JN078_001449"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016233757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HAY9040699.1"
                     /translation="MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAG
                     LVDILGASGAENVQGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEH
                     AKYVVLMDPLDGSSNIDVNVSVGTIFSIYRRVTPVGTPVTEEDFLQPGNKQVAAGYVV
                     YGSSTMLVYTTGCGVHAFTYDPSLGVFCLCQERMRFPEKGKTYSINEGNYIKFPNGVK
                     KYIKFCQEEDKSTNRPYTSRYIGSLVADFHRNLLKGGIYLYPSTASHPDGKLRLLYEC
                     NPMAFLAEQAGGKASDGKERILDIIPETLHQRRSFFVGNDHMVEDVERFIREFPDA"
     gene            6837..8210
                     /gene="mpl"
                     /locus_tag="JN078_001450"
     CDS             6837..8210
                     /gene="mpl"
                     /locus_tag="JN078_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HAY9040700.1"
                     /translation="MRIHILGICGTFMGGLAMLARQLGHEVTGSDANVYPPMSTLLEK
                     QGIELIQGYDASQLDPQPDLVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRD
                     RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEAD
                     EYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRII
                     WPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSLV
                     GEHNMHNGLMAIAAARHVGVAPADTANALGSFINARRRLELRGEANGVTVYDDFAHHP
                     TAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGRADEVFLLQPAHI
                     PWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNGGFGGIHQKLLDGLA
                     KKAEAAQ"
     gene            complement(8293..8844)
                     /locus_tag="JN078_001451"
     CDS             complement(8293..8844)
                     /locus_tag="JN078_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein"
                     /protein_id="HAY9040701.1"
                     /translation="MTKQPEDWLDDVPGDDIEDEDDEIIWVSKSEIKRDAEELKRLGA
                     EIVDLGKNALDKIPLDADLRAAIELAQRIKMEGRRRQLQLIGKMLRQRDVEPIRQALD
                     KLKNRHNQQVVLFHKLENLRDRLIDQGDDAIAEVLNLWPDADRQQLRTLIRNAKKEKE
                     GNKPPKSARQIFQYLRELAENEE"
     gene            8938..10290
                     /gene="pmbA"
                     /locus_tag="JN078_001452"
     CDS             8938..10290
                     /gene="pmbA"
                     /locus_tag="JN078_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HAY9040702.1"
                     /translation="MALAMKVISQVEAQRKILEEAVSTALELASGKSDGAEVAVSKTT
                     GISVSTRYGEVENVEFNSDGALGITVYHQNRKGSASSTDLSPQAIARTVQAALDIARY
                     TSPDPCAGVADKELLAFDAPDLDLFHPAEVSPDEAIELAARAEQAALQADKRITNTEG
                     GSFNSHYGVKVFGNSHGMLQGYCSTRHSLSSCVIAEENGDMERDYAYTIGRAMSDLQT
                     PEWVGVDCARRTLSRLSPRKLSTMKAPVIFANEVATGLFGHLVGAIAGGSVYRKSTFL
                     LDSLGKQILPDWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDGILTQWLLTSYSA
                     RKLGLKSTGHAGGIHNWRIAGQGLSFEQMLKEMGTGLVVTELMGQGVSAITGDYSRGA
                     AGFWVENGEIQYPVSEITIAGNLKDMWRNIVTVGNDIETRSNIQCGSVLLPEMKIAGQ
                     "
     gene            10474..10860
                     /gene="cybC"
                     /locus_tag="JN078_001453"
     CDS             10474..10860
                     /gene="cybC"
                     /locus_tag="JN078_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313240.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b562"
                     /protein_id="HAY9040703.1"
                     /translation="MRKSLLAILAVSSLVFSSASFAADLEDNMETLNDTLKVVEKADN
                     AAQVKDALTKMRAAALDAQKATPPKLEGKSPDSPEMKDFRHGFDILVGQIDDALKLAN
                     EGKVKEAQAAAEQLKTTRNAYHQKYR"
     gene            complement(10905..11369)
                     /gene="nrdG"
                     /locus_tag="JN078_001454"
     CDS             complement(10905..11369)
                     /gene="nrdG"
                     /locus_tag="JN078_001454"
                     /EC_number="1.97.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate
                     reductase-activating protein"
                     /protein_id="HAY9040704.1"
                     /translation="MNYHQYYPVDIVNGPGTRCTLFVSGCVHECPGCYNKSTWRVNSG
                     QPFTKAMEDQIINDLNDTRIKRQGISLSGGDPLHPQNVPDILKLVQRIRAECPGKDIW
                     VWTGYKLDELNAAQMQVVDLINVLVDGKFVQDLKDPSLIWRGSSNQVVHHLR"
     gene            complement(11559..13697)
                     /gene="nrdD"
                     /locus_tag="JN078_001455"
     CDS             complement(11559..13697)
                     /gene="nrdD"
                     /locus_tag="JN078_001455"
                     /EC_number="1.17.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004128226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HAY9040705.1"
                     /translation="MTPHVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAA
                     VVSEQMQGRNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEI
                     RGLVEQTNASLLNENANKDSKVIPTQRDLLAGIVAKHYARQHLLPRDVVQAHERGDIH
                     YHDLDYSPFFPMFNCMLIDLKGMLTQGFKMGNAEIEPPKSISTATAVTAQIIAQVASH
                     IYGGTTINRIDEVLAPFVTASYNKHRKTAEEWNIPDAEGYANSRTIKECYDAFQSLEY
                     EVNTLHTANGQTPFVTFGFGLGTSWESRLIQESILRNRIAGLGKNRKTAVFPKLVFAI
                     RDGLNHKKGDPNYDIKQLALECASKRMYPDILNYDQVVKVTGSFKTPMGCRSFLGVWE
                     NENGEQIHDGRNNLGVISLNLPRIALEAKGDEATFWKLLDERLVLARKALMTRIARLE
                     GVKARVAPILYMEGACGVRLNADDDVSEIFKNGRASISLGYIGIHETINALFGGEHVY
                     DNEQLRAKGIAIVERLRQAVDQWKEETGYGFSLYSTPSENLCDRFCRLDTAEFGVVPG
                     VTDKGYYTNSFHLDVEKKVNPYDKIDFEAPYPPLANGGFICYGEYSNIQHNLKALEDV
                     WDYSYQHVPYYGTNTPIDECYECGFTGEFECTSKGFTCPKCGNHDASRVSVTRRVCGY
                     LGSPDARPFNAGKQEEVKRRVKHLGNGQIG"
     gene            complement(14091..15746)
                     /gene="treC"
                     /locus_tag="JN078_001456"
     CDS             complement(14091..15746)
                     /gene="treC"
                     /locus_tag="JN078_001456"
                     /EC_number="3.2.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709962.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-phosphotrehalase"
                     /protein_id="HAY9040706.1"
                     /translation="MTNPPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVIQRLDYLHK
                     LGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVTQAKSRGIRIILDMV
                     FNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYY
                     LHLFAPEQADLNWENPAVRAVLKKVCEFWADRGVDGLRLDVVNLISKDPRFPDDLDGD
                     GRRFYTDGPRAHEFLHEMNRDVFTPRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFN
                     FHHLKVDYPGGEKWTLAKPDFVALKTLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFG
                     DEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELR
                     NDGRDADELLAILASKSRDNSRTPMQWSNGDNAGFTAGEPWIGLGDNYQQINVEAALA
                     DDSSVFYTYQKLIALRKQEAILTWGNYQDLLPNSPVLWCYRREWKGQTLLVIANLSRE
                     IQPWQPGQMRGNWQLVMHNYEEASPQPCAMNLRPFEAVWWLQK"
     gene            complement(15796..17217)
                     /gene="treB"
                     /locus_tag="JN078_001457"
     CDS             complement(15796..17217)
                     /gene="treB"
                     /locus_tag="JN078_001457"
                     /EC_number="2.7.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS trehalose transporter subunit IIBC"
                     /protein_id="HAY9040707.1"
                     /translation="MMSKINQTDIDRLIELVGGRGNIATVSHCITRLRFVLNQPANAR
                     PKEIEQLPMVKGCFTNARQFQVVIGTNVGDYYQALIASTGQAQVDKEQVKKAARQNMK
                     WHEQLISHFAETFFPLLPALISGGLILGFRNVIGDLPMSNGQTLAQMYPSLQTIYDFL
                     WLIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPEVWDF
                     GMFSIAKVGYQAQVIPALLAGLALGVIETRLKRIVPDYLYLVVVPVCSLILAVFLAHA
                     LIGPFGRMIGDGVAFAVRHLMTGSFAPIGAALFGFLYAPLVITGVHQTTLAIDLQMIQ
                     SMGGTPVWPLIALSNIAQGSAVIGIIISSRKHNEREISVPAAISAWLGVTEPAMYGIN
                     LKYRFPMLCAMIGSGLAGLLCGLNGVMANGIGVGGLPGILSIQPNYWQVFALAMAIAI
                     IIPIVLTSFIYQRKYRLGTLDIV"
     gene            complement(17318..18283)
                     /gene="treR"
                     /locus_tag="JN078_001458"
     CDS             complement(17318..18283)
                     /gene="treR"
                     /locus_tag="JN078_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001181347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator TreR"
                     /protein_id="HAY9040708.1"
                     /translation="MQNRLTIKDIARLSGVGKSTVSRVLNNESGVSQRTRERVEAVMN
                     QHGFSPSRSARAMRGQSDKVVAIIVTRLDSLSENLAVQTMLPEFYEQGYDPIMMESQF
                     SPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQSSLVLLARDAKGFASVCYDDE
                     GAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAM
                     KQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPE
                     IVTVDPGYAEAGRQAACQLIAQVTGRSEPQQIIIPATLSRSFPER"
     gene            18468..18521
                     /gene="mgtL"
                     /locus_tag="JN078_001459"
     CDS             18468..18521
                     /gene="mgtL"
                     /locus_tag="JN078_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_003933616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mgtA regulatory leader peptide MgtL"
                     /protein_id="HAY9040709.1"
                     /translation="MEPDPTPLPRRRLKLFR"
     gene            18662..21358
                     /gene="mgtA"
                     /locus_tag="JN078_001460"
     CDS             18662..21358
                     /gene="mgtA"
                     /locus_tag="JN078_001460"
                     /EC_number="7.2.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium-translocating P-type ATPase"
                     /protein_id="HAY9040710.1"
                     /translation="MFKEIFTRLIRHLPSRLVHRDPLPGAQQTVNTVVPPSLSAHCLK
                     MAVMPEEELWKTFDTHPEGLNQAEVESAREQHGENKLPAQQLSPWWVHLWVCYRNPFN
                     ILLTILGAISYATEDLFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVL
                     RVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQARDLFVAQASLTGESLP
                     VEKAATTRQPEHSNPLECDTLCFMGTTVVSGTAQAMVIATGANTWFGQLAGRVSEQES
                     EPNAFQQGISRVSMLLIRFMLVMAPVVLLINGYTKGDWWEAALFALSVAVGLTPEMLP
                     MIVTSTLARGAVKLSKQKVIVKHLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDIS
                     GKTSERVLHSAWLNSHYQTGLKNLLDTAVLEGTDEESARSLASRWQKIDEIPFDFERR
                     RMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRKIKRVTDTLNRQ
                     GLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLDPPKETTAPALKALKASGITVK
                     ILTGDSELVAAKVCHEVGLDAGEVVIGSDIETLSDDELANLAQRTTLFARLTPMHKER
                     IVTLLKREGHVVGFMGDGINDAPALRAADIGISVDGAVDIAREAADIILLEKSLMVLE
                     EGVIEGRRTFANMLKYIKMTASSNFGNVFSVLVASAFLPFLPMLPLHLLIQNLLYDVS
                     QVAIPFDNVDDEQIQKPQRWNPADLGRFMIFFGPISSIFDILTFCLMWWVFHANTPET
                     QTLFQSGWFVVGLLSQTLIVHMIRTRRVPFIQSCASWPLMIMTVIVMIVGIALPFSPL
                     ASYLQLQALPLSYFPWLVAILAGYMTLTQLVKGFYSRRYGWQ"
     gene            complement(21564..21950)
                     /gene="ridA"
                     /locus_tag="JN078_001461"
     CDS             complement(21564..21950)
                     /gene="ridA"
                     /locus_tag="JN078_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418664.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminobutanoate/2-iminopropanoate deaminase"
                     /protein_id="HAY9040711.1"
                     /translation="MSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPA
                     DVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATF
                     PARSCVEVARLPKDVKIEIEAIAIRR"
     gene            complement(22023..22484)
                     /gene="pyrI"
                     /locus_tag="JN078_001462"
     CDS             complement(22023..22484)
                     /gene="pyrI"
                     /locus_tag="JN078_001462"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000148566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase regulatory
                     subunit"
                     /protein_id="HAY9040712.1"
                     /translation="MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITI
                     GLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPER
                     IDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN"
     gene            complement(22497..23432)
                     /gene="pyrB"
                     /locus_tag="JN078_001463"
     CDS             complement(22497..23432)
                     /gene="pyrB"
                     /locus_tag="JN078_001463"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HAY9040713.1"
                     /translation="MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQSELLKHKV
                     IASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDA
                     IVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAM
                     VGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEE
                     VMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIAT
                     DVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL"
     gene            complement(23436..23570)
                     /gene="pyrL"
                     /locus_tag="JN078_001464"
     CDS             complement(23436..23570)
                     /gene="pyrL"
                     /locus_tag="JN078_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyr operon leader peptide"
                     /protein_id="HAY9040714.1"
                     /translation="MVQCVRHFVLPRLKKDAGLPFFFPLITHSQPLNRGAFFCPGVRR
                     "
     gene            complement(23850..24245)
                     /locus_tag="JN078_001465"
     CDS             complement(23850..24245)
                     /locus_tag="JN078_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HAY9040715.1"
                     /translation="MVERTAVFPAGRHSLYAEHRYSAAIRSGDLLFVSGQVGSREDGT
                     PEPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFHTDPEKQFEDIMTVKNEIFSAP
                     SYPTWTAVGVTWLAGFDFEIKVIARIPEL"
     gene            complement(24376..25089)
                     /gene="bdcA"
                     /locus_tag="JN078_001466"
     CDS             complement(24376..25089)
                     /gene="bdcA"
                     /locus_tag="JN078_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAY9040716.1"
                     /translation="MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAA
                     ERLAQETGATAVFTDSADKDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRL
                     FKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGL
                     ARDFGPRGITINVVQPGPIDTDANPANGPMRDMSHSFMAIKRHGQPEEVAGMVAWLAG
                     PEASFVTGAMHTIDGAFGA"
     gene            25160..25753
                     /locus_tag="JN078_001467"
     CDS             25160..25753
                     /locus_tag="JN078_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313255.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAY9040717.1"
                     /translation="MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTD
                     YLGINPPSLYAAFGNKAGLFSRVLNEYVGTEAIPLADILRDDRPVGECLAEVLKEAAR
                     RYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFM
                     STVMSGLSAKAREGHSIEQLCATAALAGEAIKTILKE"
     gene            25898..26350
                     /locus_tag="JN078_001468"
     CDS             25898..26350
                     /locus_tag="JN078_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313256.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF386 domain-containing protein"
                     /protein_id="HAY9040718.1"
                     /translation="MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNRL
                     FYLISEDMTEPHEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAF
                     LPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPARVRKAVVKMLMA"
     gene            26473..27619
                     /locus_tag="JN078_001469"
                     /pseudo
     CDS             26473..27619
                     /locus_tag="JN078_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016234052.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
BASE COUNT         6623 a         6842 c         7304 g         6850 t
ORIGIN      
        1 tccagcaagt ggctatgaac agcaaaatgg tggtcgggtt tgcttgttct taccgttcaa
       61 gccttgcaac cgctgagaat aatgatggtg gaatagagag tttatttatc gcgggcataa
      121 aaaaaccctt actaaccgaa gcccggcgtt cagggttatt gcgctagaag aacttattta
      181 ttctttgcgc gctcgaagga agcaacgatt tcagctttag cggcttctgc gttttcccaa
      241 ccttcaactt tcacccactt gcctttttcg aggtctttgt agtgctcgaa gaagtgagcg
      301 atttgcgctt tcagcagttc aggcagatcg tttacgtctt taatgtgatc gtattctttg
      361 ctcagcttgc tgtgcggaac cgcaaccagt ttcgcatctt caccggcttc gtcggtcatt
      421 ttcagaacgc caaccggacg gcaacggatc acagaaccag gctgcagcgg gtacggagtc
      481 gggaccagta cgtcaaccgg gtcaccgtcc agagacaggg tgtggttgat gtaaccgtag
      541 ttgcacggat agaacatcgc ggtggacatg aagcggtcaa cgaacagtgc gccgctctct
      601 ttgtcgattt cgtatttgat cggatctgcg ttagccggga tctcaataac aacgtagatg
      661 tcttccggca gatctttacc cgcagggacg ttgagtaagc tcatgtctgt ttcctttaaa
      721 aatatgtggc aaacaagtgc cgagtattat agccaactcg cgccgaatgt ctttgcttgt
      781 tttcgtcttc attttccttt ttcgccagtt ttaagacggt atacagagca ggaaaatcca
      841 taaccgtagc cgcatttttc atagtgagat gaaagcgatt acaaacttgt gattaacgtt
      901 ttatttactt ttttgaagtg tgatgtaacg caatccgtta cataacgaat tgtctatagt
      961 tttttcgcga acatcttttc accaataata attaccccga cgaggacaac cctatgtgga
     1021 aacgcttact tgtagtctct gcagtctcgg cagccatgtc gtctatggcg ttggccgctc
     1081 cattaaccgt aggattttcg caggtcggat cggaatccgg ctggcgcgcc gcagaaacca
     1141 atgtggcgaa aagtgaggcc gaaaaacgcg gaattacgtt gaaaattgcc gatggtcagc
     1201 aaaagcagga aaaccggatt aaagcggtac gttccttcgt tgcacaaggg gtggatgcga
     1261 tctttatcgc tccagtggtt gcgacgggtt gggaaccggt attaaaagag gcgaaagatg
     1321 ccgaaatccc ggtcttcttg ctcgaccgtt ccatcgatgt gaaagacaaa tctctctata
     1381 tgaccaccgt tactgccgac aacatcctcg aaggtaagtt gatcggtgac tggctggtaa
     1441 aagaagtgaa tggcaaacca tgcaacgtgg tggagctgca gggcaccgtt ggggccagcg
     1501 tcgccattga ccgtaagaaa ggctttgccg aagccattaa gaatgcgcca aatatcaaaa
     1561 ttatccgctc gcagtcaggt gacttcaccc gcagtaaagg caaagaagtc atggagagct
     1621 ttatcaaagc ggaaaacaac ggcaaaaaca tctgcatggt ttacgcccat aacgacgaca
     1681 tggtgattgg tgcaattcag gcaattaaag aagcgggcct gaaaccgggc aaagatattc
     1741 tgacaggttc tatcgatggc gtaccggata tctacaaagc gatgattgat ggcgaagcga
     1801 acgccagtgt tgaactgacg ccgaatatgg cgggacccgc ttttgacgcg ctggagaaat
     1861 acaaaaaaga cggcaccatg cctgaaaagc tgacgttaac caaatccccc ctttacctgc
     1921 ctgataccgc aaaagaagag ttagagaaga agaaaaatat ggggtattga gggttgctat
     1981 gcctgatgcc gattcgtagg ccggataagg cgctcgcgcc gcatccggcg atggtgcact
     2041 gaagcctgat gcgacgctta ccgcgtctta tcatgcctac tgggagcacg ctttacaccg
     2101 ggggaaacca tgacgaccga ccaacaccag gaaatcctcc gcaccgaagg attaagtaaa
     2161 tttttccccg gcgtcaaagc gttagacaac gttgatttca gcctgcgccg tggcgaaatc
     2221 atggcgctgc tcggtgaaaa cggggcggga aaatcaacgc taatcaaagc attaactggt
     2281 gtataccacg ccgatcgcgg caccatctgg ctggaaggcc aggttatctc accgaaaaat
     2341 accgcccacg cgcaacaact cggcattggc accgtctatc aggaagtcaa cctgctaccc
     2401 aatatgtcgg tcgctgataa tctatttata ggccgcgaac ccaaacgctt cggccttcta
     2461 cgccgcaaag agatggaaaa gcgcgccacc gaactgatgg catcttacgg tttctccctc
     2521 gacgtgcgcg aaccgctcaa ccgcttttca gtcgcgatgc agcaaatcgt cgccatttgc
     2581 cgggctatcg atctctccgc caaagtgctg atcctcgatg aacccaccgc cagcctcgac
     2641 acctaggaag tggagctatt atttggcctg atgcgtcagt tgcgcgatcg cggcgtcagc
     2701 ctgatctttg tcactcactt tctcgatcag agctatcagg tcagcgatcg gatcaccgtt
     2761 ttacgcaacg gcagtttcgt aggctgtcgg gaaacgcgcg agctaccgca gatcgaactg
     2821 gtaaaaatga tgctggggcg cgagctggat acccacgcgc tacagcgtgc cgggcgaaca
     2881 ttgttgagcg acaaacccgt tgccgcgttc aaaaattacg gcaaaaaagg aacgatagca
     2941 ccgtttgatc tcgaagtgcg ccccggcgag atcgtcggcc tggcaggctt gctgggatcc
     3001 ggacgtaccg aaaccgccga agtgatcttc ggtatcaaac ctgctgacag cggcacggcg
     3061 ttgatcaaag gcaaaccgca aaacctgcga tcgccacatc aggcttcggt actgggcatc
     3121 ggcttctgcc cggaagacag gaaaaccgat ggcatcatcg ctgccgcctc ggtgcgggaa
     3181 aatatcatcc tcgctctcca ggcccagcgc ggctggctac gacctatttc ccgcaaagag
     3241 cagcaagaga ttgccgaacg ctttatccgc cagcttggca ttcgcacacc ttcaactgaa
     3301 caaccgattg aatttctctc cggcggcaat cagcaaaaag tgttgctttc acgttggcta
     3361 ctgacccgac cgcaatttct gatcctcgat gagccaaccc gtggcattga tgttggtgcc
     3421 cacgccgaga tcatccgcct gattgaaacg ctatgcgccg atggtctggc gctgctggtg
     3481 atctcctccg aactggaaga actggtgggc tatgccgacc gggtgatcat catgcgcgat
     3541 cgcaaacagg tggcggagat ccggctggca gagctttccg ttccggctat catgaacgcc
     3601 attgcggcgt aaggagaaca gtgtgatgcc tcaatctctt ccggacacca ctacgccaaa
     3661 aaggcgcttt cgctggccga cggggatgcc gcagctggta gcactattgc tggtgctgct
     3721 ggtcgacagc ctggtagccc cgcatttctg gcaggtagtg cttcaggatg ggcgtttgtt
     3781 cggtagcccc atagacattc ttaaccgtgc agcccccgtt gcgttactgg cgattggtat
     3841 gacgctggtg atcgccaccg gtgggattga tctctccgta ggggcggtga tggctatcgc
     3901 cggagccaca acggctgcga tgacggtcgc ggaagtcagc ctgccgattg ttttgttaag
     3961 cgccctaggc accggcatcc tggcgggatt gtggaacggc atactggtag cgatcctcaa
     4021 aattcagcca tttgtcgcca ccctgatcct gatggtcgcc gggcgcggcg tggcgcaact
     4081 gatcacctcc ggacagatcg tcacgtttaa ctcgccggat ctctcatggt ttggcagtgg
     4141 atcgctgttg ttcctgccaa cgccagtcat tattgcggta ctgacgcttc tcctgttctg
     4201 gctgttgacc cgcaaaacgg cactggggat gtttatcgaa gccgttggta tcaacattcg
     4261 ggcggcaaaa aatgccgggg taaacacgcg gatcatcgtc atgctcactt atgtgttgag
     4321 cgggctgtgt gcggcgattg cgggcattat cgtggcggcg gatattcgcg gtgccgatgc
     4381 caacaacgcc ggattatggc tggagctgga cgccattctc gcggtggtga ttggcggcgg
     4441 atcgctgatg ggcgggcgct ttaacctgct gctctcggta gtgggggcgc tgattattca
     4501 ggggatgaac accggaattt tgctttcggg ctttccaccg gagatgaacc aggtggtgaa
     4561 agcggtggtg gtgctttgcg tgctgattgt ccagtcgcaa cgctttatca gtctgattaa
     4621 aggagtacgt agccgtgata aaacgtaatt tgccactgat gatcaccatc ggcgtctttg
     4681 tgctgggcta tttctactgc ctgacgcagt ttcccggttt tgcttccaca agagtgatct
     4741 gcaatatcct gaccgataac gcttttctgg ggattattgc cgttggtatg acctttgtga
     4801 tcctctctgg cggtatcgat ctctccgtcg gttcggtgat cgcctttact ggcgtgtttc
     4861 tggcaaaagt ggttggcgat ttcggcctct cgccgctgct ggcgtttccg ctagtgctgg
     4921 tgatgggctg tgccttcggc gcatttatgg ggcttctgat cgacgccctg aagatcccgg
     4981 catttatcat tacgcttgcg gggatgttct ttttgcgcgg cgtcagctat ctcgtttcgg
     5041 aagagtcgat tccgataaac catcccattt atgacacgct ctcaagcctt gcgtggaaaa
     5101 tccccggcgg cggtcgcctt agtgcgatgg ggctgttgat gctggcggtg gtggttatcg
     5161 gtattttcct tgcgcatcgt acccgttttg gcaatcaggt gtacgctatt ggcggcaacg
     5221 cgacgtcggc gaacctgatg gggatttcta ctcgcagcac tactattcgc atttatatgc
     5281 tctccaccgg actggcaaca ctggcgggga ttgtcttctc gatttatacc caggccggat
     5341 atgcactggc gggcgtaggt gtggaactgg acgccatcgc gtcggtggtg attggcggta
     5401 cgttgttaag tggtggcgtc gggacggtgc ttgggacgct ttttggcgtg gcaattcagg
     5461 gactgatcca gacttacatc aactttgacg gcacgctgag ttcctggtgg acgaaaatcg
     5521 ccatcggtat tttgttgttt atttttatag cattacagcg tgggttaacg gtgctgtggg
     5581 agaatcgtca gagttcgcca gtgacaagag tcaacattgc gcagcgataa aaatgcctct
     5641 ccgtgtggag aggcgcagga gattacgcgt ccgggaactc acggataaag cgttcgacat
     5701 cttcaaccat atggtcgttg ccgacaaaga acgaacggcg ctggtgcaga gtttccggga
     5761 tgatatccag aatacgctct ttgccatcgc tcgctttacc gcccgcttgt tccgccagga
     5821 atgccatcgg gttgcactca taaagcaaac gcagtttgcc gtccgggtgg ctggcggtgc
     5881 ttgggtagag ataaataccg cctttcagca ggttacggtg gaaatccgca accagtgaac
     5941 cgatataacg tgaggtatac gggcggttgg tggatttatc ttcttcctgg cagaatttaa
     6001 tgtacttctt caccccgttc ggaaacttaa tgtagtttcc ttcgttgatg gagtaggttt
     6061 tgcctttctc cgggaagcgc atccgttcct ggcacaggca gaaaacgccc agcgaaggat
     6121 cgtaagtaaa ggcgtgaaca ccgcatccgg tggtgtaaac cagcatggta gaggagccgt
     6181 ataccacgta acctgccgca acctgtttgt taccaggctg gaggaaatct tcttccgtta
     6241 ccggcgtgcc gacgggcgta actcggcggt agatggagaa aatggtaccg acagagacgt
     6301 taacatcgat gttggacgag ccatccagtg ggtccatcag caccacgtat tttgcatgtt
     6361 cacagccttc aaagacaaca atctcatctt cttcttcaga ggcaatgcct gcaacgatat
     6421 cgcgtgcttt cagtgcggct ttcagttttt cattagcgaa caagtcgagt ttttgctgaa
     6481 cctcgccctg cacgttctca gcaccgctgg cacccaggat atcaaccagt cctgctttgt
     6541 tgatatcgcg atggataatc ttggcgccca gttttattgc cgacagcaaa gcagtgagct
     6601 caccggtagc atgagaaaac tcgtgctgct tttcgacaat aaattcacct aacgttttca
     6661 taaaactttc cctgcaatgt ttatggagta aagcgaccgc aacaatctta acaaataatc
     6721 tcaatgttgc gctcaggtga atcgcgccag caaattacgg attatcctga aatgcgtttc
     6781 tcacttgccc gacatatgcg taaaatgagc ggcagattaa aaaaggatag tgacgtatgc
     6841 gcattcatat tttaggaatt tgtggcacgt ttatgggcgg tctggcgatg ctggcgcgcc
     6901 agttaggcca tgaagtaacg ggttcggacg ccaatgtgta tccgccgatg agcaccttac
     6961 ttgagaagca aggcattgaa ctgattcagg gttacgatgc cagccagctc gatccgcagc
     7021 cggatctggt gattattggc aacgccatga cccgtggaaa tccgtgtgtg gaagcggtac
     7081 tggaaaaaaa catcccttat atgtcaggtc cacagtggct gcacgatttt gtgctgcgcg
     7141 accgctgggt gctggccgtt gccggtacac acggcaaaac caccaccgcg ggaatggcga
     7201 cctggattct ggaacagtgt ggttacaaac cgggatttgt gatcggcggt gtgccgggga
     7261 actttgaggt ttcggcgcgt ctgggcgaaa gcgacttctt tgttatcgaa gcggatgagt
     7321 acgactgcgc cttcttcgac aaacgctcta aatttgtcca ttactgcccg cgtacgctga
     7381 tcctcaacaa ccttgagttc gatcacgccg atatctttga cgacctgaaa gcgatccaga
     7441 aacagttcca ccatctggtg cgtatcgttc cggggcaggg ccgtattatc tggccggaaa
     7501 atgacatcaa cctgaaacag accatggcga tgggctgctg gagcgagcag gagctggtgg
     7561 gtgagcaggg gcactggcag gcgaaaaagc tgaccactga tgcttccgaa tgggaagtct
     7621 tgctggatgg cgaaaaagtg ggcgaagtga aatggtcgct ggtaggcgaa cataatatgc
     7681 ataatggcct gatggcgatt gcggcggccc gccatgttgg cgtagcgccg gcagataccg
     7741 ctaacgcgct gggttcgttt attaatgctc gtcgccgtct ggagttgcgt ggtgaagcga
     7801 atggcgtcac ggtatatgac gattttgccc atcacccgac ggcgattctg gcaacgctgg
     7861 cggcgctgcg tggcaaagtt ggtggtacag cgcgcattat tgctgtgctg gaaccgcgct
     7921 cgaataccat gaaaatgggg atctgcaaag acgatttggc accttcatta ggtcgtgccg
     7981 atgaagtctt cctgctgcaa ccggcgcata ttccgtggca ggtggcagaa gtggcagaag
     8041 cctgcgttca gcctgcacac tggagtggcg atgtggatac gctggcagat atggtggtga
     8101 aaaccgctca gcctggcgac catattctgg tgatgagcaa cggcggtttt ggtgggatcc
     8161 atcagaaact gctggatggt ctggcgaaga aggcggaagc tgcgcagtaa ttcggcctca
     8221 gcctgagata gcattgccgg ataaggcgtt tacgccgcat ccggcaaacc atactcacat
     8281 caacaacgaa aattactctt cattctccgc cagttcgcgc agatactgga aaatctggcg
     8341 tgcggatttc ggcggcttat tcccttcttt ctctttcttc gcgttgcgga tcagagtacg
     8401 cagttgctga cgatcggcat cgggccacag atttaatacc tcagcgatgg cgtcatcacc
     8461 ttgatcgatc agacgatcgc gcaggttttc cagtttatgg aacagcacca cctgctggtt
     8521 gtgacggttt ttcagcttat ccagcgcctg acggatcggt tctacatcgc gctggcgcag
     8581 catcttaccg atgagctgca actggcggcg gcgaccttcc atcttaatac gctgggcgag
     8641 ctcaatagcc gcgcgcagat ccgcatctaa cgggatctta tccagcgcgt ttttccccag
     8701 atcaacaatt tccgcgccaa ggcgttttag ctcctcggca tcacgtttaa tttcactttt
     8761 actgacccag ataatttcat cgtcttcgtc ttcgatgtca tcaccgggaa cgtcgtcgag
     8821 ccagtcttcg ggctgcttag tcatctcagg ctccttaaaa aaagaggcta atgttaccag
     8881 ttaagatgcg cactgaaaaa cggttctctg ttagacttca gagaaactct ctacattatg
     8941 gcacttgcaa tgaaagtaat ctctcaagtt gaagcgcagc gcaagattct ggaagaagca
     9001 gtttccactg cgctggagtt ggcctcaggc aaatcggacg gtgcggaagt tgccgtcagc
     9061 aagaccaccg gcattagcgt aagcacgcgt tatggtgaag tggagaatgt tgaattcaat
     9121 agcgatggcg cgctggggat cactgtttat caccagaacc gcaaaggtag cgcatcatcc
     9181 accgatttaa gcccgcaggc cattgcccgt actgtacagg cggcgctgga tattgcccgt
     9241 tatacctcgc cagatccctg tgccggcgtg gcagacaaag agctgctggc ctttgacgca
     9301 ccagatctcg acttgttcca ccctgcggaa gtttccccgg atgaagccat tgaactggcg
     9361 gcccgcgcag aacaggcggc attgcaggcg gacaaacgca tcaccaatac cgaaggtggc
     9421 agctttaaca gccactacgg tgtcaaagtt tttggcaaca gccacggcat gttgcagggt
     9481 tactgctcaa cgcgtcattc gctctccagc tgtgtaattg ccgaagaaaa tggcgatatg
     9541 gagcgtgatt acgcctacac cattggtcgt gcgatgagcg atctgcaaac gccagagtgg
     9601 gttggggtcg actgtgctcg ccgtacttta tcgcgcctgt caccgcgtaa actctccacc
     9661 atgaaagcgc cggtcatttt tgccaatgaa gtggcaaccg ggctttttgg ccatctggtg
     9721 ggggcgatag cgggtggatc ggtttaccgt aaatctacct tcctgctgga ttcgctgggt
     9781 aaacaaattc tgccggactg gctgaccatt gaagagcatc cgcatctgct gaaagggctg
     9841 gcgtcgacgc cattcgacag cgaaggtgtg cgcaccgagc gtcgcgatat tattaaagat
     9901 ggcatcctga ctcagtggct gctgaccagc tattcggcgc gaaaactggg gctgaaaagc
     9961 accggacatg cgggcggtat tcacaactgg cggattgccg gacaaggtct aagcttcgag
    10021 cagatgctca aagagatggg caccgggctg gtggtgacgg aattgatggg ccagggcgtg
    10081 agtgcaatta ccggtgatta ttcccgtggt gcggcgggct tctgggtaga aaacggcgaa
    10141 attcagtatc cggttagcga aatcaccatc gcaggtaatt taaaagatat gtggcgcaat
    10201 attgtcaccg tcggtaacga tattgaaaca cgcagtaata tacagtgtgg ttctgtgctg
    10261 ttgccggaga tgaaaatcgc cggacagtaa aaaaactggc gcgacctgtc gcgctataaa
    10321 ctaaaaaatt acacaaaatc attcgcactg catcgagacg gaaagtgaat gagggccggg
    10381 gagcgtactc gcagtacgtg acccggtcga atgagcgtag tcgtcgatga ggcagtgtga
    10441 atgatgaagt gtaaataaaa aaggaagtga gcaatgcgaa aaagcctgtt agctattctt
    10501 gcagtctcct cgttggtatt cagttcggcg tcgtttgccg ctgatcttga agacaatatg
    10561 gaaaccctca acgacacttt aaaagtggtc gaaaaagccg ataacgcggc gcaagtcaaa
    10621 gacgcgttaa cgaagatgcg cgccgcagcg ctggatgcgc aaaaagcaac gccgccgaag
    10681 ctcgaaggca aatcaccgga cagcccggag atgaaagact tccgtcacgg tttcgatatt
    10741 ctggtcggtc agattgacga cgcgctgaag ctggcaaatg aaggtaaagt aaaagaagcg
    10801 caggctgccg cagagcaact gaaaacgacc cgcaacgcct atcaccagaa gtatcgttaa
    10861 ttcctcattt ccctgttgcc tgcactcagg taacagggaa cttatcatcg caaatgatgc
    10921 accacctgat tgctgctgcc gcgccagatc agggaagggt cttttaaatc ctgcacaaat
    10981 ttgccgtcga ccagcacgtt aatcaaatca acaacctgca tttgcgctgc gttgagttcg
    11041 tcgagtttat agcctgtcca cacccagatg tctttacccg gacactcggc gcggatgcgt
    11101 tgtaccagtt tcagaatatc cggcacgttt tgcggatgca gcggatcgcc gccggagagg
    11161 gaaataccct ggcgtttgat acgagtgtca ttcagatcgt taatgatctg gtcttccatt
    11221 gctttagtaa atggctgacc ggaatttacc cgccatgtgc ttttgttata gcaaccgggg
    11281 cattcatgaa cacacccgga gacaaacaga gtgcaacgag tgccggggcc gttgacgatg
    11341 tcgacaggat agtactgatg ataattcatt atttcgcctg gcttatcagt ccgcgtgtag
    11401 actgcatccg gtaatcaatg cctgatgcga cgctgtcgcg tcttatcagg cctacagccg
    11461 ttgccaaatg taggccggat aaggcgttta cgccgcatcc ggcaatcaac gcgggatgcg
    11521 acgctttcac atcacatccg gcatttgctt agtgcagatc aacctatctg cccatttccc
    11581 aaatgtttaa cgcggcgctt aacttcttcc tgcttgccgg cgttaaacgg acgtgcatcc
    11641 gggctaccta aatatccgca cacgcggcga gttaccgaca cacgggaggc gtcatggtta
    11701 ccacatttcg ggcaggtgaa gcctttgctg gtgcactcga actcaccggt aaagccacac
    11761 tcgtagcact catcaatcgg tgtattggtg ccgtaatacg gtacatgctg atagctgtaa
    11821 tcccagacat cttccagcgc cttcaggttg tgctgaatgt ttgaatactc gccgtagcaa
    11881 atgaaaccac cgttcgccag cggcgggtaa ggcgcttcaa agtcgatctt gtcgtacggg
    11941 ttcaccttct tctccacatc gaggtggaaa ctgttggtgt agtaaccttt atcggtcacg
    12001 cccggcacca cgccaaactc agcagtatcg agacggcaga agcggtcgca caggttttca
    12061 ctcggcgtgc tgtagagact gaaaccataa cccgtttctt ccttccactg atccactgcc
    12121 tgacgcagac gttcaacaat ggcgatacct ttcgcgcgaa gctgctcgtt gtcgtaaaca
    12181 tgctcgccgc cgaacagcgc gttaatggtt tcgtggatgc cgatgtaacc cagcgaaata
    12241 gacgcacgac cgtttttgaa gatttcagaa acatcatcgt cagcattgag acgcacgcca
    12301 caagcacctt ccatatagag gatcggggcc acgcgcgctt tcacgccttc gagacgagcg
    12361 atacgggtca tcagcgcctt acgtgccagc accagacgtt catccagcag cttccagaag
    12421 gtggcttcat cgccttttgc ttccagagca atacgcggca ggttcaggct gatcacgccg
    12481 aggttgttac gaccatcgtg gatctgctcg ccgttttcat tttcccacac gccgaggaag
    12541 ctgcggcagc ccatcggagt tttaaacgaa ccggtgactt tcactacctg atcgtagttc
    12601 aggatatccg gatacatgcg cttgcttgcg cactccagcg ccagctgttt gatgtcgtag
    12661 ttcggatcgc cttttttatg gttcaggcca tcgcgaatcg caaacaccag tttcgggaac
    12721 accgcagttt tacggttttt accgaggcct gcgatacggt tacgcaggat agattcctga
    12781 atcaggcgcg actcccagct ggtgcccaga ccaaaaccaa aggttacaaa cggcgtctga
    12841 ccgttggcgg tgtgcagggt gtttacttcg tactccagcg actggaaggc atcgtagcac
    12901 tctttaatgg tacgagagtt agcgtagcct tcggcgtccg ggatgttcca ctcttctgcg
    12961 gtcttgcgat gtttgttgta gctggcggtg acaaacggtg ccagcacttc atcgatacgg
    13021 ttaatggtgg tgccgccata aatatggctg gcgacctgag caataatctg cgcagttaca
    13081 gcggttgccg tagagatcga cttcggcggt tcaatctcgg cgttccccat cttaaagccc
    13141 tgggtcagca tgcctttcag gtcgatcaac atgcagttga acatcgggaa gaacggcgag
    13201 taatcgagat cgtgatagtg aatatcgcca cgctcatgtg cctgcaccac gtcacgcggc
    13261 agcaggtgct gacgtgcata gtgtttagcc acgatcccgg ccagcaggtc gcgctgggtt
    13321 ggaatcacct tgctgtcttt gttggcgttt tcgttgagta acgaggcgtt ggtctgctcg
    13381 accagaccac ggatctcctg attcaggcga ccgcgttttt cacgttcaat gtcgcgatcg
    13441 tgacggtact cgatgtaagc acgagccagt tgtttgtatg gacctgacat cagctggttt
    13501 tcaacagcgg tctggatctc attgatatcc acctggttgc ggccctgcat ctgctcgctg
    13561 acaactgcag caacagtggc gcaataatcg gcatcatcga cttccgctgc tttagctgca
    13621 cgcagaatcg cttctttgat gcgctctgat ttaaacggca ctttgcagcc gtctcgtttc
    13681 atcacatgcg gtgtcatgat cgctccatat ttttaagaac aggttatcca cagaaattgg
    13741 gaaaggcgtt ttccggtttt ttcgtttcgt tttccggtgc tttccgcaat cgccatccgc
    13801 ttttccacaa cgccgcacct ttttcgtggg gagctgtagt agcaattata gtcgattaat
    13861 acaacatatt gggttgggac gcattttaaa gtctatatat agtgctttgc atcaaggatg
    13921 tttgaacttt ttttgatgta gctcaaagta aaaagcagag cgtacggatg acgggcgcta
    13981 cagcgttatg taaatttttt aatgaatttg ctggttgaaa aataaacaaa aacaacatgc
    14041 tgacagacaa aaccccggaa tgaccggcat taccggggct tagggaagat ttacttctgt
    14101 aaccaccaga cagcctcaaa aggccgtaaa ttcatggcac agggttgtgg tgaggcttct
    14161 tcgtagttat gcatcacaag ctgccagttg ccgcgcattt gccctggctg ccagggttgg
    14221 atctcacggc taaggttggc aatgaccagc aaggtttgcc ccttccattc acggcgatag
    14281 caccacaata cagggctgtt tggcagcaga tcctggtaat tgccccatgt caggatggct
    14341 tcctgcttac gcagtgcgat taacttttgg taggtgtaaa acaccgagga atcatcggcc
    14401 agcgcggctt ctacgttgat ttgttgatag ttatcaccca ggccaatcca cggttcgcca
    14461 gccgtaaatc cggcattatc gccgttgctc cattgcatgg gcgtgcggct gttgtcacgg
    14521 gatttactgg cgaggattgc caataactcg tcggcatcac gaccatcgtt gcgcagctcg
    14581 gcaaacatat tgaggctctc tacgtcgcga tagtcagtaa tgcgcgtgaa atgcgggttg
    14641 gtcatgccaa tctcttcgcc ctggtagata tacggcgttc cctgcatgcc atgcagcacc
    14701 atcgccagca tttttgccgc aggcacgcgg tattcacctt catcaccaaa gcgagaaaca
    14761 atgcgcggct gatcgtggtt acaccagaac aaggcattcc atgctacgtt gtgcattcct
    14821 tgttgccagt ggcggaacaa tgttttcaac gccacaaagt caggtttagc cagcgtccat
    14881 ttttcaccac cgggataatc gaccttcagg tgatgaaaat taaaggtcat cgacaattca
    14941 ctgcctgtca gtgccgcgta tcgctggcaa tgctcaaggc tggtggagga catttcacct
    15001 acggtcatta acccgcgtgg cgtaaacaca tcgcggttca tctcgtgcaa aaactcgtgt
    15061 gctcgtggcc cgtcggtgta gaagcgacgc ccgtcgccat ccaggtcatc agggaaacgc
    15121 gggtctttgg agatcagatt caccacatcc aggcgcaacc cgtcgacccc acgatcggcc
    15181 cagaactcac agactttttt cagcactgcg cgtaccgctg gattctccca gttgagatcc
    15241 gcctgttctg gtgcaaagag atgcaaatag tactgttcgc tttccgcatg ccagcgccac
    15301 gcactaccgc caaattttga acgccagttg ttcggtggcg tttctggttc tccatcgcgc
    15361 cagatataaa actggcggta agggctttct ttgttcagcg cctcgcgaaa ccaggcatgt
    15421 tgggtagagg tatggttaaa caccatatcg agaatgatac gaatcccgcg cgattttgcc
    15481 tgcgtcacca gttcgtcaaa atcgtccagc gtgccgtagg tgggatcaat cgccgtatag
    15541 ttcgctacgt cgtaaccgtt atcgacctgg ggagagacat aaaagggggt tagccagatg
    15601 gcatcaacgc ccagtttatg cagatagtcc aggcgttgga taacgccacg taaatcgccg
    15661 gtaccgctac ccgtggtgtc ctgaaaactc tttggataaa tctggtagat aacgccgttt
    15721 tgccaccagt ggggaggatt agtcattacg ttattcctgc aaatgcgagg gggcgcaatt
    15781 gcgccccgaa gaaaattaaa caatgtccag cgtgcccagg cggtatttcc gctgatagat
    15841 aaacgaggtg agtacaatcg ggatgatgat ggcgatagcc attgccagcg caaacacctg
    15901 ccagtagttc ggttgaatcg agagaattcc cggcaggccg cctacgccga tgccattcgc
    15961 cataacgccg ttcaggccgc atagcaatcc tgccagacca gaaccaatca tcgcgcacag
    16021 catcgggaag cgatatttca ggttgatgcc gtacattgca ggctcagtga ccccaagcca
    16081 ggcggagatc gccgcaggca cggagatctc gcgttcattg tgcttgcggc tggaaatgat
    16141 aatgccgatc acggcggagc cctgagcgat attcgacagc gcaatcagtg gccacactgg
    16201 cgtaccaccc atgctttgaa tcatctgcaa atcaatagca agcgtggtct ggtgtacccc
    16261 ggtgatcacc agcggggcgt acaggaagcc aaacaatgcc gcgccaatcg gagcaaagct
    16321 gccggtcatc aggtgacgta ccgcaaaggc aacgccatcg ccaatcatgc gaccaaacgg
    16381 accaatcagc gcatgggcga ggaacaccgc gaggatcagc gaacagacgg gcaccaccac
    16441 cagatagagg taatctggca cgatgcgttt aaggcgagtt tcaataacgc ccagcgccag
    16501 cccggctaac agtgccggga tcacctgcgc ctgatagccc actttggcga tgctgaacat
    16561 gccaaagtcc cacacttccg gcagctgctg cccgagcaga taagcgttca tcagttgggg
    16621 ggaaaccagt gtcacgccaa gcacgatacc aaggatcggt gtgccgccca tttttttcac
    16681 cgctgaccag caaatcccga ccggcaggta gaagaagatc gcttcaccga tcaaccacag
    16741 aaaatcgtag atcgtttgca gggaagggta catttgcgcc agcgtttgac cgttgctcat
    16801 gggcaaatcg ccgatcacat tgcgaaaacc gaggatcaaa ccgccgctaa tcaacgcggg
    16861 cagcaacggg aagaaggtct ctgcgaaatg agagatcaac tgctcatgcc atttcatatt
    16921 ctgccgggcg gcttttttta cctgctcttt atcaacctgc gcctgtccgg ttgacgctat
    16981 cagtgcttga tagtagtcac ccacgttggt gccaatcacc acctgaaatt gcctggcatt
    17041 ggtgaaacag cctttcacca tggggagttg ctcaatttct ttcggtctgg cattggccgg
    17101 ttggttgagg acaaagcgta ggcgagtaat acagtggctc accgtcgcaa tattgccgcg
    17161 cccgccgacc agttcaatca accgatcgat atccgtttgg tttattttgc tcatcataaa
    17221 gccccatggc agatgacatt tttggttggc tgcagaatat attgcgcgga aaaatttaaa
    17281 aacgggaacg ttcccgaaac gcagcgaaga tcacaattta tcgttcagga aacgatctgg
    17341 acagggtggc ggggatgatg atttgttgcg gttcgctgcg cccggttacc tgtgcgatca
    17401 actggcaggc cgcctggcgt ccagcttcgg cgtaaccggg atctacggtg acgatctccg
    17461 gatggaggaa tttcattaac ggcgtattac cgacgctcgc cagttgcaag gtgtcgatgc
    17521 gttgctcttg caggtattta cttgcgccaa gtgccagcgt gtcggttgcg cacagtaagg
    17581 cggtagtttc aggcgtaatc acttttgcta cgttctcata gccttgcttc atagcaaggc
    17641 ctggcagagc ggcaacggga tgcagtttat gcgctttgca gaacgccagg taggcttcgt
    17701 gacgtcgctt accggtcgtc acgtcactgt gcggcacgcc gagataactg atattacgat
    17761 gcccctggtc atacagccgt tgcatcagga tcttgattgc cccttcgtcg tcataacaga
    17821 ccgaagcaaa gccttttgcg tcacgcgcca gcagaaccag cgatgactgc cagtgggcta
    17881 acatttcttc tgttatgccg gtaaaaccga acagcactac gccgtcgata ttacgccgtt
    17941 tcagcacccc caaatgttcg gcaactaatt gcggggaaaa ctgactttcc atcatgattg
    18001 ggtcgtaacc ttgttcatag aactctggca gcatggtttg aacggcgaga ttttctgaca
    18061 acgaatccag gcgggtaaca atgatggcga ccactttatc gctttgccca cgcatagcgc
    18121 gcgcagagcg ggaaggggaa aatccatgct gattcatcac tgcttcaaca cgctcgcggg
    18181 tgcgctggct cacgccgctt tcgttattca gcacccggga aactgtagat ttccccacgc
    18241 cgcttaagcg cgcgatgtct ttgatggtca gccgattttg catcctgttg tcctgtaacg
    18301 tgttgtttaa ttatttgagc ctaactttac ccgtgcattc agcaatgggt aaagtctggt
    18361 ttatcgttgg tttagttgcc agcaggtatt atatcgccat agatgctacg aatattattg
    18421 gattctcctt attatttgcg gcgctttttt cacttaccgg aggttatatg gaacctgatc
    18481 ccacgcctct ccctcgacgg agattaaaac ttttccggta agcccgtctt ttcacggcgt
    18541 taccggatgc gtaaggccgt gacgttttaa cgtccctgct cagctttatt accttcaggt
    18601 aaggcttcgc cacgcctgaa gacatttctg tactgtttca gacagtgcgg agggactcct
    18661 tatgtttaaa gaaattttta cccggctcat tcgccattta ccttcccgtc tggttcatcg
    18721 tgatccattg cctggcgcgc agcagacagt gaatacggtg gtcccgccgt ccttaagtgc
    18781 gcattgcctg aaaatggcgg tgatgcccga agaagaattg tggaaaacgt tcgacaccca
    18841 tccggaaggg ttaaatcagg cggaagtgga atctgcccgc gaacaacatg gtgaaaataa
    18901 attacccgca caacaactgt cgccgtggtg ggtacattta tgggtctgct atcgcaaccc
    18961 ctttaatatt ttactcacca ttctcggcgc tatttcttac gccacggaag atttatttgc
    19021 tgcgggcgtt atcgcgctaa tggtcgctat ttctacgttg ctgaacttta ttcaggaagc
    19081 acgttccact aaagcggcag atgccctgaa agcgatggtc agcaataccg cgacggtgct
    19141 gcgcgtaatt aacgacaaag gcgaaaatgg ctggctggag atcccgatcg accagctggt
    19201 gcccggcgat attataaaac tggcggcggg ggatatgatc ccggcagatt tacgtatctt
    19261 gcaagcgcgg gatctgttcg tcgctcaggc gtcgttaacc ggtgagtctc tgcccgtgga
    19321 aaaagccgct accactcgcc agccggagca cagcaatccg ctggagtgcg acacgctgtg
    19381 ttttatgggc accaccgtgg tgagcggcac ggcacaagca atggtgattg ctacaggtgc
    19441 caatacctgg tttggtcaac tggcggggcg tgttagtgag caggaaagcg agccgaatgc
    19501 ctttcagcaa gggatcagcc gcgtcagtat gctgctgatt cgctttatgc tggtgatggc
    19561 accggtggtg ctgttaatca atggctacac caaaggcgac tggtgggaag cggcgctgtt
    19621 tgcgctttcg gtcgcggtag gcctaacgcc ggaaatgttg ccgatgattg ttacctcgac
    19681 gctggcgcgc ggcgcagtaa agctgtcgaa acagaaagtg atcgtcaaac atctggatgc
    19741 tattcagaac tttggcgcaa tggatattct gtgcactgat aaaaccggca ccctgacgca
    19801 ggataaaatt gtgctggaga atcataccga tatctccggt aaaaccagcg aacgcgtgct
    19861 gcatagcgcg tggttgaaca gtcattatca gaccggactt aaaaacctgc tcgatacagc
    19921 ggtgctcgaa ggtacggatg aagagtcagc gcgctcgctg gccagtcgtt ggcaaaaaat
    19981 cgatgagatt ccgtttgatt tcgagcgtcg ccggatgtcg gtggtagtgg cagaaaatac
    20041 cgagcaccat cagctggttt gcaaaggtgc attgcaggaa atcctcaatg tgtgttcgca
    20101 ggtgcgtcac aatggcgaga ttgtgccgct cgatgacatc atgctgcgta agattaagcg
    20161 ggttactgat acgctgaatc gtcaggggct gcgcgtggtt gcggtggcga cgaaatacct
    20221 gccagcgcgt gaaggagatt accagcgggc ggatgaatcc gacctgatcc tcgaaggata
    20281 tattgctttt cttgatccgc caaaagagac aaccgctccg gcactgaagg cattaaaagc
    20341 gagtggaatt accgtaaaaa tccttactgg cgacagtgag ttagttgcag cgaaagtgtg
    20401 ccatgaagtg gggctggacg cgggagaggt ggtcattggt agtgatattg aaacgctatc
    20461 tgacgacgaa ctggcaaatc ttgcacagcg caccacgctg tttgcccgcc tgacgccgat
    20521 gcataaagaa cgcattgtga ccttactgaa gcgcgaaggg catgtggttg gctttatggg
    20581 cgatggtatt aatgatgcgc ccgccttacg cgcggcggat atcggcattt ctgtggacgg
    20641 cgcggtagat attgcccgtg aagcggctga tatcatcctg ctggaaaaaa gcctgatggt
    20701 gctggaagag ggggttattg agggacgtcg cactttcgcc aacatgctga aatacatcaa
    20761 aatgacggcg agttctaact ttggtaatgt gttcagcgtg ctggtggcga gtgctttctt
    20821 gcccttcctg ccgatgttgc cgttacactt gcttattcag aacctgctgt acgatgtgtc
    20881 acaggtggcg atcccgtttg ataacgtcga cgacgagcaa attcaaaagc cgcagcgttg
    20941 gaatccggcg gatctggggc gctttatgat cttcttcgga ccgatcagct cgatcttcga
    21001 tattctgacg ttttgcctga tgtggtgggt attccatgcc aacacgccgg aaacgcaaac
    21061 gctgttccag tcgggatggt ttgtggtggg cttactgtcg caaacgctga ttgtgcatat
    21121 gatccgcacc cgccgtgtgc cgtttattca gagctgtgca tcgtggccgt taatgatcat
    21181 gaccgtgatc gtgatgattg tcgggatcgc attgccgttt tcaccgctgg ccagttatct
    21241 gcaattacag gcgttgccgt taagctattt cccgtggctg gttgcgattc tggcagggta
    21301 tatgacgtta acccagttgg tgaaaggatt ttatagccgt cgttacggct ggcagtaaag
    21361 aataaactag gcatggtggc ccggattcag attgcagaca aagtgagttt tgttcatgcc
    21421 ggatgcggtg taaacgccta atccggccta caaattcaat caattgcagg aatcacgtag
    21481 gcctgataag cgtagcgcat caggcgattt tgcgtttgtc atcagactta atccgggcat
    21541 gatagcccgg atttccatca agattagcga cgaatagcga tcgcttcgat ctcaatcttt
    21601 acgtctttcg gcagacgggc aacttcaacg caagaacgtg ccgggaaggt ggcgttgtgt
    21661 tcggtgaaga aggcttcgta agtggcgttt acggttgcga agtcgttcag atcttttaca
    21721 aacacggtag ttttaacgat gtcgcccact ttcagaccag cggcttcgac gatcgctttt
    21781 acgttatcca gcgactgacg tgcctgtgca gcgacgtctg ccggtacttc gcccgttttc
    21841 ggatttaccg ggatctgacc ggaggtgatg atcatatttc ccagatcaac gccctgtacg
    21901 taaggaccga tagctgctgg tgcattttcc gtcgcgatag ttttgctcat gatttctcct
    21961 ttattacagc ggtaaaaagt ctggctcatt atagggagcc agacttttat taccaaccgc
    22021 aattaattgg ccagcaccac attatgggaa aactcttttt cacagtattt gcatttgagc
    22081 gcgatgtcat tggcgcgttt tcgcacggca aagctggatg aaaccggttc ggcatggctg
    22141 atacagttgc tgttcgggca gaccaacaca ttgtcgatgc gctctggcag actggggcgc
    22201 gatttaccca ccacttcata gttgtcgata cggttaaccg tggcttgcgg cgcatacaat
    22261 gccagttgat ctacctgatc ttcactcaaa aaggtatttt cgattttgat cagatctttg
    22321 cggcccatct cgccagaagg caggttcaga ccaatggtga tgcgctgatc cgtttcggtc
    22381 agcttgaaca gactcaacag cttaaaaccg atctgggcgg ggatatggtc aattaccgtg
    22441 ccgcgtttaa tagcttcaac ctgcaattta ttatcgtgtg tcatctctat ttccccttac
    22501 agtaccagat cgcgattcag aaccagtgcc agtaacgcct ggcgagcgaa aatcccgttg
    22561 cctgcctgct ggaagtacca ggcgtgtggc gttttatcaa catccgtcgc aatttcatca
    22621 acacgcggca gcggatgcag tactttcata ttggctttgg cgttgtggag atcgctggcg
    22681 cgaagaacaa actgcgcttt cacgttggcg tattcggatg ggtccaggcg ctctttttgc
    22741 acgcgggtca tatacaggat gtctacttcc gccatcactt cttcaataga gctgtgcaga
    22801 ctccatgcga tccctttttc atcgagcata tccagaatgt attgcggcat tgccagcgcg
    22861 tccggcgcga tgaagtaaaa acggttgccg tcgaacttcg ctaacgcctg agtcagggag
    22921 tgaacggtgc ggccatattt caggtcacca accattgcga cgtggagatt gtccagacgc
    22981 ccctgggttt cctgaatagt gaataagtcc agcaaggttt gcgtcggatg ttggttggag
    23041 ccatcaccgg cattcagtac cggtacattg ccggaaaact cggtggccag gcgcgccgca
    23101 ccttcctgcg gatgacgcat cactatcgca tcgacgtaag tgctgataac cgaaatggta
    23161 tcggccagcg tttcgccctt tttacccagt gatgtattgg cgctgtcgga gaagcccacc
    23221 acgctggcac ccaggcggtg catggaagtt tcgaaagaga ggcgggtacg ggtagaggct
    23281 tcgaagaagc agctggcaat gactttgtgc ttcaacagct ctgattgcgg gtttgctttc
    23341 agttttgccg ctgttgccag caccagatta aggtcatcgc gactaaggtc gtttatggaa
    23401 atgatatgtt tctgatatag cggattagcc atcttttatc tcctgacgcc tgggcaaaaa
    23461 aaagcccctc gattgagggg ctgggaatgg gtgatcaacg ggaagaaaaa cggcaggcca
    23521 gcgtcttttt tcagacgcgg taagacaaaa tgtcgaacac actgaaccat acatcctccc
    23581 ggcaaattgt ccggcattat actcatcgtc agaagcggtg caagcaattg atgcaatatt
    23641 ttgtcagcgc aaacggttta tttgaattta aagttaaaat atatgcattt ttatttactg
    23701 tgattctggg gggaactgtc gttcggtatc aataattgca gacatttcct gcttttttct
    23761 ttttcacttt cacgcaatca gatatgcatt ttattccatt catccgactt atagggcgga
    23821 gtgtgaaaac gaacggctag cactattgct tagagctcag ggatgcgcgc tatcacttta
    23881 atttcaaaat caaagcctgc cagccatgta acgcccaccg ccgtccaggt tggataagat
    23941 ggcgcgctaa atatttcatt tttcaccgtc atgatgtctt caaattgttt ttctggatcg
    24001 gtatgaaagc tcgtaacatc aatgatatcg tcaaaagtgc atcccgcagc tgccagggtc
    24061 gcatgcaaat tatcaaaggc cagtctgact tgttgctgaa aatcgggttc tggtgttccg
    24121 tcctctcgac ttcctacttg cccggaaaca aacagcaaat cgccggaacg aatagccgca
    24181 gaataacgat gctcagcata cagtgaatgt cgtccagcag ggaaaacagc ggttctttct
    24241 accatttggt tatcctcaag atttacgaca tgaacagaag atttatattt accaggagcc
    24301 gcttttagcg gacgacgtga gtaaacaaaa cccagacatc atgggaaatg gctgggctta
    24361 attgagcgta gtcggttatg cgccaaacgc gccatcaatg gtatgcatcg cgccggtaac
    24421 aaaactggct tctggccctg ctaaccatgc gaccatacca gcgacctctt ccggttgccc
    24481 atgtcttttg atggccataa aactatgcga catatcgcgc attggcccgt tggcgggatt
    24541 agcgtcggta tcaattggcc ctggctggac gacgttgatg gtgatcccac gcggtccgaa
    24601 atcacgggcc agcccgcgcg ccatgccttg cagggcagat ttactggcgg cataagcagc
    24661 catgcctgca acaggcatac gatcgccatt cacggagccg atgattaaga tgcgtccgcc
    24721 ttcgggcatc tgccgggcgg cttcaacaga ggcatggtaa ggagcatgaa tattgatttt
    24781 gaaaaggcga tcaatatcgt cggcatttaa ttccagggca tcgccaaaga cgccaatacc
    24841 tgcatttacc accaggatat ccaatgcgcc gctcttacga acgacatcaa taacagcgtc
    24901 tttgtcagca ctatctgtga atactgctgt cgctccagtc tcttgtgcca ggcgttcagc
    24961 ggcatctttc gaccccgcat aggtgaatcg tacattggcc ccatcggtga cgaaacgacg
    25021 tacgatagcg gcaccgattc cacggctacc accgaggatg agaactgtct tacctgtaaa
    25081 agcgcccata aggactcctt gatttattat gtaacatgca ttacaaaact gttttaactt
    25141 tctgtcaaca agttttgtaa tggtcactaa aaaacaatct cgcgttccag gtcgtcccag
    25201 acgtttcgct cctgagcagg cagtctctgc ggcaaaagtg ctttttcacc aaaaaggttt
    25261 cgatgctgtc agtgttgctg aagttactga ttatcttggt attaaccccc cgagcctcta
    25321 cgcggctttt ggcaataagg ctgggttatt tagccgtgta ctcaatgaat atgtcggtac
    25381 ggaagctatt ccgcttgccg atattcttcg tgatgatcgt ccggtagggg agtgcctggc
    25441 tgaggtatta aaagaagcgg cgcgccgata tagccaaaac ggcggctgcg ctggctgtat
    25501 ggttcttgaa ggcattcata gtcatgatcc acaagcgcgt gatattgccg ttcaatatta
    25561 tcacgccgca gaaacgacca tttatgacta tatcgccagg cggcatccac aaagcgcaca
    25621 atgtgtgact gattttatga gtaccgtgat gtcagggctt tctgcgaagg cacgggaggg
    25681 gcactccatc gaacaactct gtgcaacagc tgcactggcg ggggaagcga taaaaactat
    25741 tctcaaggag tgatgcgggc cttgacccga aaggcgggaa cgcgcctgcc gataagttgt
    25801 gataagacaa taattcacgc gttaaggcta gcggaattga tcatcttttc gtataacgat
    25861 ggaaatgaaa cgttgtttta attaaggagt ggaaaagatg atcatcggaa atattcataa
    25921 tcttcagccg tggctacccc aggagttacg ccaggcgatt gagcatatca aagcacacgt
    25981 tacggcagaa acgccaaagg gcaagcacga tatcgaaggc aatcgtctgt tttatcttat
    26041 ctcggaagat atgaccgagc cgcacgaagc tcgccgtgcg gagtaccatg cccgctatct
    26101 cgacattcag attgtgttaa aaggtcagga aggcatgacc ttcagcacgc aacctgcagg
    26161 caccccggat accgactggt tagctgataa agacatcgca tttttgccgg aaggcgttga
    26221 tgagaaaaca gttatcctta atgaaggtga ttttgttgtg ttttatccgg gggaagtgca
    26281 taaaccgctg tgcgcagtgg gcgcgccagc ccgggttcgc aaagcagtag tgaagatgct
    26341 gatggcgtga tgacttttcg ccgtaaataa ctctaggttt acggcgagtt tgtgaaaaga
    26401 gcgttttttg atattttttt gtgagtaaaa tttgtaatgc ttagacgttc ttattaactc
    26461 aaggagttcg tcatgagcaa aatatcagat ttgaattatt ctcaacacat tacattagcc
    26521 gacaatttta aacaaaaaag tgaagtttta aatacctggc gtgttggaat gaataatttt
    26581 gcccgtaatg ccgaggggca ggataacaca agaaatatcc ttgatcctaa gacatttttg
    26641 gaatttttgg taaaaatatt tactctaggt tatgtggatt ttagcaaacg ctccaacgaa
    26701 gcgggaagaa atatgatggc tcatattgag tcctcatctt atatcaaaaa taatgatggc
    26761 agtgagataa taaagtttgt tatgaataat cctgaagggg aacgagcgga tttatctaag
    26821 gtggaaatag aaatcacact ttccactttc actactatgg ggactcgtca aggacatacg
    26881 gctattatat ttcaacaacc tgatggttcg actaatcgtt atgaaggaaa gtcctttgaa
    26941 agaaaagatg agagttcatt acacctgatt actaacaaga ttctggcatg ttaccaacgc
    27001 gaagctaaca aggaaatagc tcgtctatta aatatttcac aggagttaaa taattctcag
    27061 gacttgaata actcgcaggt gagttgtaaa gattcagttg attctacgat tacggattta
    27121 ttagaaaaac cattgaataa tgcattatta gcaataagga aagaacatct gctattaatg
    27181 ccttatgtat gtaatgaatc gatttcatac ttgcttggtg aaaaagggat actgaaagaa
    27241 atagatgacc ttaacgcagt aaataattat cttcttaata ataagaaagc tactgacaat
    27301 gaaattaatg acatcaaagt taacctgtct catattctta ttgattcctt agatgatgca
    27361 aaagttaacc ttacaccggt catcgattct ggatgacttt tttaaaatcc ccatatatta
    27421 atgatgtaag aatactggat tggtgtttta ataaaagaat gcaatatttt ggtgattctg
    27481 aaaagataaa gtatgcatgc tccgtgataa atcatattga ttttagccgc gatcaatcta
    27541 aagattttag ctgcgatcaa tctaaaatta aaatagctga gaccttattt ttcaatctcg
    27601 ataaagaacc ctataaaaa
//
LOCUS       DADMJB010000038        27468 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.038, whole genome shotgun sequence.
ACCESSION   DADMJB010000038 DADMJB010000000
VERSION     DADMJB010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27468)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27468)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27468
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.038"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            454..3639
                     /gene="rne"
                     /locus_tag="JN078_001470"
     CDS             454..3639
                     /gene="rne"
                     /locus_tag="JN078_001470"
                     /EC_number="3.1.26.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E"
                     /protein_id="HAY9040719.1"
                     /translation="MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKG
                     KITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIV
                     QIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLEL
                     PEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAF
                     RDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIE
                     SAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQL
                     RLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRL
                     SPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASY
                     LLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEE
                     AMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPA
                     QPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRD
                     TRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTDEQQAPRRERSRR
                     RNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAV
                     VAPVVEETAAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRS
                     RRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQV
                     EEQREQEEVQVQPMVTEVPVAAAVEPVVSAPVVEEMAEVVEAPVPVAEPQPEVVETTH
                     PEVIAAAVTEQPQVITESDVAVAQEVAEHAEPVVEPQEETADIEEVAETAEVVVAEPE
                     VVAQPAAPVVAEVAAEVETVAAVEPEITVEHNHATAPMTRAPAPEYVPEAPHHSDWQR
                     PTFAFEGKGAAGGHTATHHASAAPARPQPVE"
     gene            complement(3836..4789)
                     /gene="flgL"
                     /locus_tag="JN078_001471"
     CDS             complement(3836..4789)
                     /gene="flgL"
                     /locus_tag="JN078_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-filament junction protein FlgL"
                     /protein_id="HAY9040720.1"
                     /translation="MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPI
                     AASQAVVLSQAQAQNSQYTLARTFAIQKVSLEESVLSQVTTAIQNAQEKIVYASNGTL
                     SDDDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESI
                     KQQVDASRSMVIGHTGDKIFDSITSNAVAEPDGSASETNLFAMLDSAIAALKTPVADS
                     EADKEIAAAALDKTNRGLKNSLNNVLAVRAELGTQLNELESLDSLGSDRALGQTQQMS
                     DLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSLFQLNK"
     gene            complement(4801..6444)
                     /gene="flgK"
                     /locus_tag="JN078_001472"
     CDS             complement(4801..6444)
                     /gene="flgK"
                     /locus_tag="JN078_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HAY9040721.1"
                     /translation="MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQA
                     NSTLGAGGWVGNGVYVSGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTS
                     TSSLATQMQDFFTSLQTLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNI
                     AIGASVDQINNYAKQIASLNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVS
                     VQDGGTYNITMANGYSLVQGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLN
                     TGSLGGILTFRSQDLDQTRNTLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPA
                     VLQNTKNKGDVAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKV
                     AFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEKDAGDSDNRNGQ
                     ALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSIS
                     GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR"
     gene            complement(6510..7451)
                     /gene="flgJ"
                     /locus_tag="JN078_001473"
                     /pseudo
     CDS             complement(6510..7451)
                     /gene="flgJ"
                     /locus_tag="JN078_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415599.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly peptidoglycan hydrolase FlgJ"
     gene            complement(7451..8548)
                     /locus_tag="JN078_001474"
     CDS             complement(7451..8548)
                     /locus_tag="JN078_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415598.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HAY9040722.1"
                     /translation="MIKFLSALILLLVTTAAQAERIRDLTSVQGVRQNSLIGYGLVVG
                     LDGTGDQTTQTPFTTQTLNNMLSQLGITVPTGTNMQLKNVAAVMVTASLPPFGRQGQT
                     IDVVVSSMGNAKSLRGGTLLMTPLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQL
                     NGGRITNGAVIERELPSQFGVGNTLNLQLNDEDFSMAQQIADTINRVRGYGSATALDA
                     RTIQVRVPSGNSSQVRFLADIQNMQVNVTPQDAKVVINSRTGSVVMNREVTLDSCAVA
                     QGNLSVTVNRQANVSQPDTPFGGGQTVVTPQTQIDLRQSGGSLQSVRSSARLNNVVRA
                     LNALGATPMDLMSILQSMQSAGCLRAKLEII"
     gene            complement(8560..9258)
                     /gene="flgH"
                     /locus_tag="JN078_001475"
     CDS             complement(8560..9258)
                     /gene="flgH"
                     /locus_tag="JN078_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HAY9040723.1"
                     /translation="MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPT
                     PVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKT
                     NFGFDTVPRYLQGLFGNARADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGN
                     LHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVVDARIEYVGNGYINEAQN
                     MGWLQRFFLNLSPM"
     gene            complement(9311..10093)
                     /gene="flgG"
                     /locus_tag="JN078_001476"
     CDS             complement(9311..10093)
                     /gene="flgG"
                     /locus_tag="JN078_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006819466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HAY9040724.1"
                     /translation="MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDL
                     LYQTIRQPGAQSSEQTTLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGF
                     FQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVT
                     QQGQAAPVQVGQLNLTTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGLLYQGY
                     VETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMQQKLTQL"
     gene            complement(10231..10986)
                     /locus_tag="JN078_001477"
     CDS             complement(10231..10986)
                     /locus_tag="JN078_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgF"
                     /protein_id="HAY9040725.1"
                     /translation="MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV
                     PVEGLSLPTRTLVTASTPGADMTPGKIDYTSRPLDVALQQDGWLAVQTADGSEGYTRN
                     GSIQVDPTGQLTIQGHQVIGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVGR
                     LKLVKATGSEVQRGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMS
                     DMIASARRFEMQMKVISSVDDNAGRANQLLSMS"
     gene            complement(11006..12934)
                     /gene="flgD"
                     /locus_tag="JN078_001478"
                     /pseudo
     CDS             complement(11006..12934)
                     /gene="flgD"
                     /locus_tag="JN078_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706995.3"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook assembly protein FlgD"
     gene            complement(12946..13350)
                     /gene="flgC"
                     /locus_tag="JN078_001479"
     CDS             complement(12946..13350)
                     /gene="flgC"
                     /locus_tag="JN078_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HAY9040726.1"
                     /translation="MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRA
                     KQVVFQVNAAPGAATGGVKVADVIESQAPDKLVYEPGNPLADAKGYVKMPNVDVVGEM
                     VNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ"
     gene            complement(13354..13683)
                     /gene="flgB"
                     /locus_tag="JN078_001480"
     CDS             complement(13354..13683)
                     /gene="flgB"
                     /locus_tag="JN078_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HAY9040727.1"
                     /translation="MLDKLDAALRFQQEALNLRAQRQEVLAANIANADTLGYQARDID
                     FASELKKVMQRGRDATSVVALTMTSTQHIPAQALTPPTAELQYQMSLSALSGQIKGMM
                     NVLQSGN"
     gene            13839..14498
                     /gene="flgA"
                     /locus_tag="JN078_001481"
     CDS             13839..14498
                     /gene="flgA"
                     /locus_tag="JN078_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HAY9040728.1"
                     /translation="MLAIKRSVAIIAILFSPLSAASNLTSQLHTFFSAQLVGVSDEVR
                     VSIRTAPNLLPPCEQPLLSMSNNSRLWGNVNVLARCGNDKRYLQVNVQATGNYVVAAM
                     PIVRGGKLEAGNVKLKRGRLDTLPPRTVLDINQLVDAISLRDLSPDQPIQLTHFRQAW
                     RVKAGQRVNVIASGDGFSANAEGQALNNAAVAQNARMRMVSGLVVSGVVDADGNILIN
                     L"
     gene            14574..14909
                     /gene="flgM"
                     /locus_tag="JN078_001482"
     CDS             14574..14909
                     /gene="flgM"
                     /locus_tag="JN078_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma-28 factor FlgM"
                     /protein_id="HAY9040729.1"
                     /translation="MSIDRTSPLNPVSTVQPRETTDAPVTNTRAAKTTDSTSTSTSTS
                     TSTSTSTSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIRNGELKMDIGKIADALIN
                     EAQQDLQSN"
     gene            14914..15330
                     /gene="flgN"
                     /locus_tag="JN078_001483"
     CDS             14914..15330
                     /gene="flgN"
                     /locus_tag="JN078_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis chaperone FlgN"
                     /protein_id="HAY9040730.1"
                     /translation="MTRLAEILDQMSAVLNDLKTVMDQEQQHLSMGQINGSQLQWITE
                     QKSSLLATLDYLEQLRKKEPNTANSVDISQRWQEITVKTQQLRQMNQHNGWLLEGQIE
                     RNQQALEMLKPHQEPTLYGANGQTSTTHRGGKKISI"
     gene            complement(15370..16905)
                     /gene="murJ"
                     /locus_tag="JN078_001484"
     CDS             complement(15370..16905)
                     /gene="murJ"
                     /locus_tag="JN078_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706990.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HAY9040731.1"
                     /translation="MNLLKSLAAVSSMTMFSRVLGFARDAIVARIFGAGMATDAFFVA
                     FKLPNLLRRIFAEGAFSQAFVPILAEYKSKQGEDATRVFVSYVSGLLTLALAVVTVAG
                     MLAAPWVIMVTAPGFADTADKFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIP
                     AFAPTLLNISMIGFALFAAPYFNPPVLALAWAVTVGGILQLVYQLPHLKKIGMLVLPR
                     INFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFASFLASGSVSWMYYADRLMEFPS
                     GVLGVALGTILLPSLSKSFASGNHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTV
                     SLFQYGKFTAFDALMTQRALIAYSVGLIGLIVVKVLAPGFYSRQDIKTPVKIAIVTLI
                     LTQLMNLAFIGPLKHAGLSLSIGLAACLNASLLYWQLRKQKIFTPQPGWMAFLLRLVV
                     AVLVMSGVLLGMLHIMPEWSLGTMPWRLLRLMAVVLAGIAAYFAALAVLGFKVKEFAR
                     RTV"
     gene            complement(17072..17938)
                     /locus_tag="JN078_001485"
     CDS             complement(17072..17938)
                     /locus_tag="JN078_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HAY9040732.1"
                     /translation="MKKLRIGVVGLGGIAQKAWLPVLAAASDWMLQGAWSPTRAKALP
                     ICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRD
                     AERLVELAARKKLTLMVGFNRRFAPLYGELKTQLATAASLRMDKHRSNSVGPHDLYFT
                     LLDDYLHVVDTALWLSGGKASLDGGTLLTNDAGEMLFAEHHFSAGPLQITTCMHRRAG
                     SQRETVQAVTDGALIDITDMREWREERGQGVVHKPIPGWQSTLEQRGFVGCARHFIEC
                     VQNQTVPQTAGE"
     gene            complement(17940..18587)
                     /locus_tag="JN078_001486"
     CDS             complement(17940..18587)
                     /locus_tag="JN078_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF480 domain-containing protein"
                     /protein_id="HAY9040733.1"
                     /translation="MKYQLTALEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNR
                     EPVMNLSESEVQEQLDNLVKRHYLRTVSGFGNRVTKYEQRFCNSEFGDLKLSAAEVAL
                     ITTLLLRGAQTPGELRSRAARMYEFSDMAELESTLEQLANREDGPFVVRLAREPGKRE
                     SRYMHLFSGEVEDQPAVTDMSNAVDGDLQARVEALEIEVAELKQRLDSLLAHLGD"
     gene            complement(18598..19182)
                     /gene="rimJ"
                     /locus_tag="JN078_001487"
     CDS             complement(18598..19182)
                     /gene="rimJ"
                     /locus_tag="JN078_001487"
                     /EC_number="2.3.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S5-alanine
                     N-acetyltransferase"
                     /protein_id="HAY9040734.1"
                     /translation="MFGYRSNVPKVRLTTDRLVVRLVHDRDAWRLADYYAENRHFLKP
                     WEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFGLFDPDEKEIIGVANFSNVVRGSF
                     HACYLGYSIGQKWQGKGLMFEALTAAIRYMQRTQHIHRIMANYMPHNKRSGDLLARLG
                     FEKEGYAKDYLLIDGQWRDHVLTALTTPDWTPGR"
     gene            19418..20620
                     /gene="mdtH"
                     /locus_tag="JN078_001488"
     CDS             19418..20620
                     /gene="mdtH"
                     /locus_tag="JN078_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtH"
                     /protein_id="HAY9040735.1"
                     /translation="MSRVSQARNLGKYFLLIDNMLVVLGFFVVFPLISIRFVDQMGWA
                     AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMGIAHEPWLL
                     WFSCLLSGLGGTLFDPPRSALVVKLIRPQQRGRFFSLLMMQDSAGAVIGALLGSWLLQ
                     YDFRLVCATGAVLFVLCAAFNAWLLPAWKLSTVRTPVREGMTRVMRDKRFVTYVLTLA
                     GYYMLAVQVMLPIMVNDVAGAPSAVKWMYAIEACLSLTLLYPIARWSEKHFRLEHRLM
                     AGLLIMSLSMMPVGMVSGLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMG
                     FSRLGLAIGGAIGYIGGGWLFDLGKSAHQPELPWMMLGIIGIFTFLALGWQFSQKRAA
                     RRLLERDA"
     gene            20684..21331
                     /gene="grxB"
                     /locus_tag="JN078_001489"
     CDS             20684..21331
                     /gene="grxB"
                     /locus_tag="JN078_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 2"
                     /protein_id="HAY9040736.1"
                     /translation="MKLYIYDHCPYCLKARMIFGLKNIPVELHVLLNDDAETPTRMVG
                     QKQVPILQKDDSRYMPESMDIVHYVDKLDGKPLLTGKRSPAIEEWLRKVNGYANKLLL
                     PRFAKSAFDEFSTPAARKYFVDKKEASAGNFADLLAHSDGLIKNISDDLRALDKLIVK
                     PNAVNGELSEDDIQLFPLLRNLTLVAGINWPSRVADYRDNMAKQTQINLLSSMAI"
     gene            21465..22025
                     /locus_tag="JN078_001490"
     CDS             21465..22025
                     /locus_tag="JN078_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HAY9040737.1"
                     /translation="MNKFLFAAALIVSGLLVGCNQLTQYTITEQEINQSLAKHNNFSK
                     DIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALP
                     VFDKEKGAIFLKEMEVVDATVQPEKMQTVMQTLLPYLNQALRNYFNQQPAYVLREDGS
                     QGEAMAKKLAKGIEVKPGEIVIPFTD"
     gene            22131..23177
                     /gene="pyrC"
                     /locus_tag="JN078_001491"
     CDS             22131..23177
                     /gene="pyrC"
                     /locus_tag="JN078_001491"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HAY9040738.1"
                     /translation="MTAPSQVLKIRRPDDWHLHLRDGDMLKTVMPYTSEIYGRAIVMP
                     NLAPPVTTVEAAVAYRQRILDAVPAGHNFTPLMTCYLTDSLDPNELERGFNEGVFTAA
                     KLYPVNATTNSSHGVTSIDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREAHFIES
                     VMEPLRQRLTALKVVFEHITTKDAADYVRDGNERLAATITPQHLMFNRNHMLVGGVRP
                     HLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAPTAL
                     GSYATVFEEMNALQHFEAFCSVNGPQFYGLPVNDTFIELVREEQQVAESIALTDDTLV
                     PFLAGETVRWSVKQ"
     gene            23251..23496
                     /gene="dinI"
                     /locus_tag="JN078_001492"
     CDS             23251..23496
                     /gene="dinI"
                     /locus_tag="JN078_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage-inducible protein I"
                     /protein_id="HAY9040739.1"
                     /translation="MRIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRY
                     AAANNLSVIGVTKEDKQRISEILQETWESADDWFVSE"
     gene            23786..24040
                     /gene="bssS"
                     /locus_tag="JN078_001493"
     CDS             23786..24040
                     /gene="bssS"
                     /locus_tag="JN078_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309465.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator BssS"
                     /protein_id="HAY9040740.1"
                     /translation="MEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQTPNKSEQEGT
                     EVGQTLWLTTDVARQFISILEAGIAKIESGDFPVNEYRRH"
     gene            24155..25273
                     /gene="solA"
                     /locus_tag="JN078_001494"
     CDS             24155..25273
                     /gene="solA"
                     /locus_tag="JN078_001494"
                     /EC_number="1.5.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-methyl-L-tryptophan oxidase"
                     /protein_id="HAY9040741.1"
                     /translation="MKYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHH
                     GDTRLIRHAYGEGEKYVPLVLRAQTLWDELSRHNEDDPIFVRSGVINLGPADSAFLAN
                     VAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAK
                     EAGCAQLFNCPVTAIRHDDDGVTIETVDGEYQAKKAIVCAGTWVKDLLPELPVQPVRK
                     VFAWYQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERV
                     PFAEVVSDGSEAFPFLRNVLPGIGCCLYGAACTYDNSPDEDFIIDTLPGHDNTLLITG
                     LSGHGFKFASVLGEIAADFAQDKKSDFDLTPFRLSRFQ"
     gene            25321..25434
                     /locus_tag="JN078_001495"
     CDS             25321..25434
                     /locus_tag="JN078_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706980.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2770 domain-containing protein"
                     /protein_id="HAY9040742.1"
                     /translation="MRRLLHYLINNIREHLMLYLFLWGLLAIMDLIYVFYF"
     gene            25695..26261
                     /locus_tag="JN078_001496"
     CDS             25695..26261
                     /locus_tag="JN078_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HAY9040743.1"
                     /translation="MSFTNTPERYGVISAAFHWLSAIIVYGMFTLGLWMVTLSYYDGW
                     YHKAPELHKSIGILLMMGLVIRVLWRVISPPPGPLPSYSPMTRLAAKAGHLALYLLLF
                     AIGISGYLISTADGKPISVFGWFDVPATLADAGAQADFAGALHFWLAWSVVVLSVMHG
                     FMALKHHFIDKDDTLKRMLGKSSSDYGV"
     gene            26265..26840
                     /locus_tag="JN078_001497"
     CDS             26265..26840
                     /locus_tag="JN078_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HAY9040744.1"
                     /translation="MKKSLLGLTFASLMFSAGSAVAADYKIDKEGQHAFVNFRIQHLG
                     YSWLYGTFEDFDGTFTFDEKNPAADKVNVTINTTSVDTNHAERDKHLRSADFLNTAKY
                     PQATFTSTSVKKDGDELDITGDLTLNGVTKPVTLEAKLIGQGDDPWGGKRAGFEAEGK
                     IKLKDFNIKTDLGPASQEVDLIISVEGVQQK"
     gene            complement(26882..>27468)
                     /locus_tag="JN078_001498"
     CDS             complement(26882..>27468)
                     /locus_tag="JN078_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HAY9040745.1"
                     /translation="NHYEYEVGHFENALEIPADTFREQLPKAVEMMQAHKDKKIVMYC
                     TGGIRCEKASAWMKHNGFNKVWHIEGGIIEYARKAREQGLPVRFIGKNFVFDERMGER
                     ISDEIIAHCHQCGAPCDSHTNCKNDGCHLLFIQCPVCAEKYKGCCSEICCEESALPPE
                     EQRRRRAGRENGNKIFNKSRGRLNTTLGIPDPTE"
BASE COUNT         6590 a         7315 c         6919 g         6644 t
ORIGIN      
        1 gggatgcgtt catataaaaa ctgtgagtaa gcgggtgata aatggtaaaa gtcatcttgc
       61 tataacaagg cttgcagtgg aataatgaag ccgtttccgt gtccatcctt gttaaaacaa
      121 gaaattttac ggaataaccc attttgcccg accgatcatc cacgcagcaa tggcgtaaga
      181 cgtattgatc tttcaggcag ttagcgggct gcgggttgca gtccttaccg gtagatggaa
      241 atatttctgg agagtaatac ccagtctgtt tctttgataa ttgcgctgtt tttccgcatg
      301 aaaaacgggc aaccgacact ctgcgcctct ttgagctgac gataaccgtg aggttggcga
      361 cgcgactaga cacgaggcca tcggttcaca cccggaaagg cgttactttg cccgcagctt
      421 agtcgtcaat gtaagaataa tgagtaagtt acgatgaaaa gaatgttaat caacgcaact
      481 cagcaggaag agttgcgcgt tgcccttgta gatgggcagc gtctgtatga cctggatatc
      541 gaaagtccag ggcacgagca gaaaaaggca aacatctaca aaggtaaaat cacccgcatt
      601 gaaccgagtc tggaagctgc ttttgttgat tacggcgctg aacgtcacgg tttcctccca
      661 ctaaaagaaa ttgcccgcga atatttccct gctaactaca gtgctcatgg tcgtcccaac
      721 attaaagatg tgttgcgtga aggtcaggaa gtcattgttc agatcgataa agaagagcgc
      781 ggcaacaaag gcgcggcatt aaccaccttt atcagtctgg cgggtagcta tctggttctg
      841 atgccgaaca acccgcgcgc gggtggcatt tctcgccgta tcgaaggcga cgaccgtacc
      901 gaattaaaag aagcactggc aagccttgaa ctgccggaag gcatggggct tatcgtgcgc
      961 accgctggcg tcggcaaatc tgctgaggcg ctgcaatggg atttaagctt ccgtctgaaa
     1021 cactgggaag ccatcaaaaa agccgctgaa agccgcccgg ccccgttcct gattcatcag
     1081 gagagcaacg taatcgttcg cgctttccgc gattacttac gccaggacat cggcgaaatc
     1141 cttatcgata acccgaaagt gctcgaactg gcacgtcagc atatcgctgc attaggtcgc
     1201 ccggatttca gcagcaaaat caaactgtac accggcgaga tcccgctgtt cagccactac
     1261 cagatcgagt cgcagatcga gtccgccttc cagcgtgaag tccgtctgcc gtccggtggt
     1321 tcgattgtta tcgacagtac cgaagcgtta actgccatcg acatcaactc cgcacgcgcg
     1381 acccgcggcg gcgatatcga agaaaccgcg tttaacacca acctcgaagc tgccgatgag
     1441 attgctcgtc agctgcgcct gcgtgacctc ggcggcctga ttgttatcga cttcatcgac
     1501 atgacgcctg tacgccacca gcgtgcggta gaaaaccgtc tgcgtgaagc ggtgcgtcag
     1561 gaccgtgcgc gtattcaaat cagccatatt tctcgctttg gcctgctgga aatgtcccgt
     1621 cagcgcctga gcccatcact gggtgaatcc agtcatcacg tttgtccgcg ttgttctggt
     1681 actggcaccg tgcgtgacaa cgaatcgctg tcgctctcta ttctgcgtct gatcgaagaa
     1741 gaagcgctga aagagaacac ccaggaagtt cacgccattg ttcctgtacc aatcgcttct
     1801 tacctgctga atgaaaaacg ttctgcggta aatgccattg aaactcgtca ggacggtgtg
     1861 cgctgcgtga ttgtgccaaa cgatcagatg gaaaccccgc actaccacgt gctgcgcgtg
     1921 cgtaaagggg aagaaacccc aaccttaagc tacatgctgc cgaagctgca tgaagaagcg
     1981 atggcgctgc cgtctgaaga agagttcgct gaacgtaagc gtccggaaca acctgcgctg
     2041 gcaacctttg ccatgccgga tgtgccgcca gcgccaacgc cagctgaacc tgccgcgcct
     2101 gttgtagctc cagcaccgaa agctgcaccg gcaacaccag cagctcctgc acaacctggg
     2161 ctgttgagcc gcttcttcgg cgcactgaaa gcgctgttca gcggtagtga agaaaccaaa
     2221 ccgaccgagc aaccagcacc gaaagcagaa gcgaaaccgg aacgtcaaca ggatcgtcgc
     2281 aagcctcgtc agaacaaccg ccgtgaccgt aatgagcgcc gcgacacccg tagtgaacgt
     2341 actgaaggca gcgataatcg cgaagaaaac cgtcgtaatc gtcgccaggc acagcagcag
     2401 actgccgaga cgcgtgagag ccgtcagcaa gctgaggtaa cggaaaaagc acgtaccacc
     2461 gacgagcagc aagcgccgcg tcgtgaacgt agccgccgcc gtaacgatga taaacgtcag
     2521 gcgcaacaag aagcgaaggc gctgaatgtt gaagagcaat ctgttcagga aaccgaacag
     2581 gaagaacgtg tacgtccggt tcagccgcgt cgtaaacagc gtcagctcaa tcagaaagtg
     2641 cgttacgagc aaagcgtagc cgaagaagcg gtagtcgcac cggtggttga agaaactgcc
     2701 gctgccgaac caattgttca ggaagctcca gctccacgca cagaactggt gaaagtcccg
     2761 ctgccagtcg tagcgcaaac tgcaccagaa cagcaagaag agaacaatgc tgataaccgt
     2821 gacaacggtg gcatgccgcg tcgttctcgc cgctcgcctc gtcacctgcg cgtgagtggt
     2881 cagcgtcgtc gtcgctatcg tgacgagcgt tatccaaccc agtcgccaat gccgttgacc
     2941 gtagcgtgcg cgtctccgga actggcctct ggcaaagtct ggatccgcta tccaattgta
     3001 cgtccgcaag atgtacaagt tgaagagcag cgcgaacagg aagaagtaca agtgcagccg
     3061 atggtgactg aggtccctgt cgccgccgct gtcgaaccgg ttgttagcgc gccagttgtt
     3121 gaagaaatgg ctgaagtcgt agaagccccc gtaccggttg ccgaaccgca accggaagtg
     3181 gttgaaacga cgcatcctga agtgattgcc gccgcggtaa ctgaacagcc gcaggtgatt
     3241 accgagtctg atgttgccgt agcccaggaa gttgcagaac acgcagaacc ggtggttgaa
     3301 ccgcaggaag agacggcaga tattgaagaa gttgccgaaa ctgctgaggt tgtggttgca
     3361 gaacctgaag ttgttgctca acctgccgcg ccagtcgtcg ctgaagtcgc agcagaagtt
     3421 gaaacggtag ccgcggttga accagagatc accgttgagc ataaccacgc taccgcgcca
     3481 atgacgcgcg ctccggcacc ggaatatgtt ccggaggcac cgcatcacag tgactggcag
     3541 cgccctactt ttgccttcga aggtaaaggt gccgcaggtg gtcatacggc aacgcatcat
     3601 gcctctgccg ctcctgcgcg tccgcaacct gttgagtaat aattagctca aagtaatcaa
     3661 gccctggtaa ctgccagggc ttttttattt catgtttgaa tcaacatatt aaaattcatc
     3721 aaatggcatc cttgctaacc aacaatgcaa aataggcaaa aaaaatgccc gccccggcga
     3781 tccctgagcg ggcagacaaa acatacccag tttcatgata tgttttaaag cgagcttatt
     3841 tgttgagctg gaagagcgac aatccctgca tatcggtaaa tgctttatac gatgcctgca
     3901 atgccgtttg ctgcatgatg taagatgaaa tagttgcatt ccagtccaca tcaaccagat
     3961 cgctcatctg ctgcgtttgc cctaaagcgc gatcgctacc taaggaatcc agcgactcca
     4021 gttcgttcag ctgcgtgcct aattccgcgc gaacggcaag gacattattc agcgagtttt
     4081 tcagtccacg gttggtttta tccaatgccg cagcggcgat ttctttatcc gcttcgctat
     4141 ccgcgaccgg cgttttcagg gctgcgatgg cgctatccag catggcaaaa agattggttt
     4201 cagaagcgct accgtctggc tccgcaactg cgttgctggt aatactgtcg aaaattttgt
     4261 cacccgtgtg ccctatcacc atcgaacgcg aagcatcgac ctgttgctta atactttctg
     4321 ctccaccgac gtatttccct ttctcttcgc taaacggcgc agtctctgtt ttataaccgg
     4381 caaaaatgta gcgcccgtta ccgtcagtgg tgttcgccag attcagcaac tggtcacgaa
     4441 gcccctgaat atccgtagcc agcgaggccc ggtcatcgtc actcaaggtg ccattgctgg
     4501 cgtagacaat tttttcctga gcattctgga tagcagtggt gacctggcta agtacactct
     4561 cttccagtga cactttttga atggcgaaag tacgcgccag cgtgtactgg ctgttttgcg
     4621 cctgtgcctg ggagagaact acggcttgtg atgctgcaat gggatcgtca gaagggttaa
     4681 cgactcgctt acctgtcgac atctgctcgc cgtacttcat ccattccgcc tgagaattgg
     4741 tgatgccacg catgttttgc tggtacatca tctgggtact gaaacgcatc ttatctcccc
     4801 ttagcgaatg ttaatcagcg catcaaaaat cgcgtttgcc gtctgcagaa cctgcgcatt
     4861 cgccaggtaa tactgctgaa aacgttgcag atttccgtac tcttcgtcga gattgacgcc
     4921 agagatagac tgctgctgat tggaaagctg cgtcaccaca ttaccttgcg tggcgctact
     4981 ggttttcaac gtcgcggttt tattaccgat atcactcact aacgaggcat aagcgtcgtt
     5041 aaaggatttc gcaccgccca ccgttttact gttgctttgc agatccagca gggcctgacc
     5101 gttgcggtta tcgctatcac ccgcatcttt ttcgctcgcc atcgctattt tcgcttcgtc
     5161 ggtgattaat acatccatgt tgacgatggc gtcacttact ggtttcagcg tgaagctgtc
     5221 gttaacggca ggcgttcctg taaacgtcaa ctccagacca tcaaatgcca ctttaccgtt
     5281 ggcatccggc gtcaccgtaa aagtggtatt gctggcaagg cgggtgacct gccactgatt
     5341 attatcgaac gagattttgt aatctgtcgc cagtaccgcg gaggcatcag ttaccgtggc
     5401 accgatcgca acgtcacctt tgtttttcgt gttttgcaaa accgcgggct taccgatagc
     5461 aaagaaatct tcaccagcat cgccgttggc atcaaatccg gctttgtgtt gggtgttgaa
     5521 agcctcagca aatgccagcg ccagttgtcc aagcgtatta cgcgtctggt ccagatcctg
     5581 agaacggaat gtcagaatgc cgcccagcga cccggtattc agtaatttct ccgggatctc
     5641 aatattgcct gccgtcccat caacgtaagc gacagtcgta cgagaagggt cggcgctgga
     5701 aggaactgcc gccagttgcc gcgccgtact tccctgaacc agtgagtaac cattggccat
     5761 cgtgatgtta taagtgccgc catcctgaac gctgacttct acaccaacaa tctggtttaa
     5821 ttcgctcacc agttgatcgc gttgatccag cagattgtta ggtgacgccc ctgcccccac
     5881 gcctgtcagg cgggagattt ggtcgttcag gctggcgatt tgtttagcgt aattgttgat
     5941 ctgatcaacg ctggcaccta tcgcgatatt gacctgtttg tcctggtcgc gaagatactg
     6001 atcggtggtt ttaaactgat tcaccaaccc ttctgatttc ccaatcagcg cctggcgcgc
     6061 tgccgggtct tccgcgttac tcaccagcgt ttgcaggctg gtgaagaaat cctgcatctg
     6121 tgttgccagc gaagaggtac tggtggagag catattgtcg attttcgaca tctgctcata
     6181 gcgggcagtc aggccgctac tttgcgtctg cgccgcacgt aactggttgg tgataaacgc
     6241 atcatactca cgctgcacac cagaaacgta gacaccattg ccaacccagc cgccagcgcc
     6301 caacgtgcta ttggcctgcg ccataatagt ggtttggcgg gtatatccgg caacgttata
     6361 gctggagata ttattacttg ccgtatttaa cgccgcctgg gccgcgttca gtccgctcat
     6421 ggcgttatta atcaagctgg acatggaggt tccttataag ccttcaatta cagagtatta
     6481 tcggcagcga cccgccggac ttgagttatt caaaacagat tatcaatgtt catactgtag
     6541 gttttgctca ccttgtcgct tatcgatttc atctgctgaa tcatgttggt gagtttgcgg
     6601 gcatagtgag gatcggtggc atagcccgcg tcctgtaggg cctgcgcccc ctgctccgca
     6661 ctcgtggcgg tggtcacggc ggcgtagcgc gggttacgcg ttaacagccc aacgtaatcc
     6721 gactatgctt ccagatacga gctgtagacc cgaaacttcg cttttacttt cttcgcttcg
     6781 ccgttttcat attcagtcgt ggtgatttca gtaactggcc ctttccagtt gccagaggct
     6841 ttgacaccaa acaggttata gctcggctcg ccgttttcgc ggcggatttg ccgttgcccc
     6901 caaccagatt ccagcgccgc ctgagcgagg atcaaatgat gtggcacacc gctttgctgg
     6961 cttgccagtt gggcgggcag cgagagttgc gcgaggaatg ctttactgtc acccggcagc
     7021 gaatcatcgt agttacgtgg cacggccttt tgcaccagct gcgaaagcgc ctgattttga
     7081 taacgcacca cagtttcgag cgggaatttc atcggtgctg ctggcgtgga ctcctctggc
     7141 aatggttgtt ctggcgtcat ctgtttaacc atcatctctg caagccccag acctttgccc
     7201 gccgtcatct gttgggcaat ctgctggtca tacatactgg tatacaggcg agtgtgctcg
     7261 ctgctgaaca ggccatcttt tggtaaagcg tcgcgcatgc ttttcaacat catctgcacg
     7321 aacatccctt ccacctgacg ggccaccgga cggatatttg ccgccggatc ttcgcccgct
     7381 ttcgccttta gttcgttgag tgattgcgca tcccaggccg cacttgccag tagtttgcta
     7441 tcgctgatca tcagatgatt tccagttttg cccgcagaca tcccgcactt tgcattgatt
     7501 gcagtatgga catcagatcc atcggcgtag cgcccagcgc attgagcgcg cgcaccacgt
     7561 tattgagcct ggcgctggaa cgtacgcttt gcagcgaacc gccgctctgg cgtaaatcga
     7621 tctgcgtttg tggagtaacc acagtctgtc caccaccaaa cggtgtatct ggctggctga
     7681 cattggcctg acgattaact gttactgaga gattcccctg cgctaccgcg cagctgtcga
     7741 gggtcacttc gcgattcatc accaccgaac cggtgcgcga gttaatcact actttagcgt
     7801 cctgcggggt gacattaacc tgcatattct ggatatcggc aaggaagcgg acctgggaac
     7861 tgttgccact cggtacgcgc acctgaatag tccgcgcatc taacgcggtg gcgctgccat
     7921 atccacgcac gcggttgatg gtgtcagcga tttgctgcgc catgctgaaa tcttcgtcgt
     7981 taagttgcaa attaagggta ttcccgacgc caaactggct gggcaattca cgttcaataa
     8041 ccgcaccatt ggtgatccgt ccaccgttca gttggttaac ctgaacactg ctaccgccag
     8101 cggaggctcc tgcgccgcca accagaatat tgccctgcgc cagcgcatac acctgactgt
     8161 caacgccctt aagcggtgtc atcaacaacg tacctccacg caagcttttg gcattaccca
     8221 tggaagaaac caccacatcg atggtttgcc cctgacgtcc aaacggagga agtgacgctg
     8281 tcaccattac cgcagcgacg ttttttagct gcatattggt gcccgtcgga acggtaattc
     8341 ccagctgtga gagcatgtta ttaagcgttt gtgtggtaaa cggcgtctgg gttgtctggt
     8401 caccggtgcc atccagcccc accaccagac catagccaat cagtgagttt tgccttaccc
     8461 cctgaacact ggtgagatcg cgaatacgct cagcctgagc cgccgtcgtg accagtagaa
     8521 gaattaatgc agagagaaat ttaatcacca cagcctcact tacattggcg acaggttaag
     8581 gaagaaacgc tgcaaccagc ccatattttg cgcttcgtta atgtagccat tgcctacgta
     8641 ttcaatgcgc gcatccacca cctgagtaga cggtacggta ttgctgccgc tgatagtgcg
     8701 tggattaacc acgccagaga agcgaataaa ttcggtaccc tgattaatgg caatctgttt
     8761 ttcacccacc acatgcaggt tgccgttgac cagtacctgg tcaaccgtca ccgtcaacgt
     8821 gccgctaaag gtattgctgg cattggcccc gccctttccg ttgaacgtgt taccaccgga
     8881 ggcttcgaca tcggcacgag cgttaccaaa cagcccctgc aaatagcgcg gcacagtatc
     8941 aaagccaaaa ttagttttac cgtcacggct ggcattcgca gaggagcttt tgctggcgct
     9001 gacgttctcc tgcaacacga tggtcagcgt atcgccaata ttgcgtggtc gacgatcttc
     9061 aaacagcggt tgatagccat agttaatcgg ctgagcagac tggaaaatag aaccgttggc
     9121 gacgggcgtc ggaccgggaa ccggttgtgc actggtcgcc ccctgcacca gcggcgtgga
     9181 gggtatccag gcgcagccgg ttagtgaaag caccaacaag ctggaaatgg cataagtatg
     9241 cgcagcgttt ttttgcatgg ctatcatctt caaaaatcag taaaccggtg aacctgccac
     9301 cggttaagcc ttagagttgc gtcagttttt gctgcatctg atcggtggtg gacaccgctt
     9361 tactgttgat ttcgtaagcg cgttgcacct gaatcatatt gaccagttct tccgccacgt
     9421 tgacgttaga cgtttcaaca tacccttgat acagcaatcc cgcgccgttc aggcccggcg
     9481 tgctttcgtt cggtgcacca gaggattgcg tttcggtgta gaggttttcg ccaatgctct
     9541 ccagcccggt gtcattcata aaggtggtga gattgagctg cccaacctga accggagctg
     9601 cctggccttg ttgggttacg ctgaccacgc catcacgacc gatggtgata cttaacgcat
     9661 tcgccggaat ggtgatcgct ggctgcacct gaaaaccacc agccgtcacc agctgcccgt
     9721 tctgatccac ctggaaagag ccgtcacggg tataggctga tgaaccatct ggcaacatca
     9781 cctggaaaaa gccctgccct ttaatcgcga catctttgct gttgttggtc tgcgacagat
     9841 ttccctggct gtgtaagcgt tcagtggcga ccgggcgtac ccccgtgccg atttgtaatc
     9901 cggagggtaa ggtggtttgt tcggaagact gtgcccccgg ctggcgaatg gtttgataaa
     9961 gcagatcttc aaacaccgcg cgctgacgct taaaaccgtt agtactgacg tttgccaggt
    10021 tgttggcaat gacgtccata ttggtttgct gggcgtcaag gcccgttttg gcgatccata
    10081 atgaactgat cataaaatgt cctgtagtgg attagtgaca agcagagcag aagcacgcga
    10141 cagtgtgaat tccccctcac tctaaccctc tccccaaagg ggcgagggaa tagtccgcgc
    10201 gcttttattg caatgtcatc aatcgttcaa ttaactcatc gacagcagtt ggttggcacg
    10261 gcctgcgtta tcatcgacgc tgctgatcac cttcatctgc atttcaaaac gccgcgcgct
    10321 ggcaatcatg tcgctcattg ccgcaacggc attgacgtta ctgccttcca gaacccccga
    10381 catcacacgc aaggttggat ctgcctgcag taccggccct cgcgtggcct gggtttctgc
    10441 gcttaaacga aaaatgccgt cgtcaccgcg ctgcacttcg ctgcccgtgg ctttcaccag
    10501 tttcagacgc cctactggcg caactgtatt tgccggatcg cccggattga gcgccgagat
    10561 tgtgccatcg gcagcaatag tgatttccgc tccttccggc acagcaattg gccccgcctc
    10621 gcctatcacc tgatgcccct gaattgtcag ttgcccggtg ggatcaacct gaatgctgcc
    10681 attacgcgta tacccttcgc tgccgtcagc ggtctgcacg gccagccagc catcctgctg
    10741 caacgcaacg tccagcgggc gcgaggtgta atctatcttg ccgggcgtca tgtctgcacc
    10801 cggtgttgac gccgttacca gcgtgcgcgt gggcagtgaa agcccttcca ccggcactgc
    10861 gcgcaaggcg tttaactgcg cgcgaaaacc gggcgtagag gcattggcca gattactggc
    10921 ggttaccgcc tgttgattca gcgtctggct ggctgctccc atcgcagtat aaattgcgtg
    10981 atccattgag ctatcccgtc agcgattagc gtaagttaac cagcgtgttg aggatctggt
    11041 cctgggtttt gatggtctgg gcgttagact gatagttacg ctgggcaacg atcatattga
    11101 ccagttcttt actgagatcg acgttggacg cttccagcgc accgttggtc agggtgccaa
    11161 agtttcccgt cccggctgtc cccaacagcg ccacgccaga agattgcgtc gcagaccaga
    11221 cgttgtcgcc ttcggatgcc agaccttcgt tgttggcaaa gttcgccagt acaatctgcc
    11281 ccagcagttg agtttgttcg ttggaatagt tgccgacaac cgtaccgtca tcattgattt
    11341 gataactcac cagatcgccc ggtttgtagc cgttctgggg ggttgccaca atattgttag
    11401 cgccggtatt ttgctgcatg gagttgagga agctcagact aaacgtggcg ggttctgcac
    11461 cgttaattgc gccggttgcg atattattcg ccatcgcacc atccactaat gtgccattag
    11521 cattaaattc cagtgttgtc gctgtcttcg caatgctgtt tggatcactg ctatcctggg
    11581 tgtagacctg ccagttatta tccccggtct tcacaaagta gacgctcatg tcatgagcat
    11641 taccctgact gtcgaaaaca gtcaccgaac cttttttgtt atagctatcc gcattgctgg
    11701 cgctgaatgg cgtaacagta ggaagcggat cactggaatt caggttgatc tgcatcgacg
    11761 ccgtggtggt agttttcgct gccatcaggg tattcgggat cgaaatattg gtcggattcg
    11821 ccccttgctg aatagtcggc ggcgtaccgg ttgccgggta acccgtcagc tgtaaacctt
    11881 gcatattcac caggttacgg ttttcatcca gcttaaattg tccgttacgg ctgtagaaca
    11941 ccgaaccgtt gctgtctacc agacggaaaa aaccgttctg gctgatagca acgtccagac
    12001 ctcgcccggt gttggtggtc gtgccatctg taaagtcctg agtgataccg gcaactttta
    12061 cccccagtcc cactttcgaa ccggcaaaca tatcggcaaa agaggccgtg cctgatttaa
    12121 agccgtaggt ggcggagttg gcaatattgt tgccaataac atcgaggtta gtggcggcag
    12181 cgtttaatcc gctaaccgct tgagaaaagg ccatgactga ctcctgaaat gtgaaggctt
    12241 aaattatctg ccgtacttcg tcgagggtgg tggtgccgta agtgccgaga tccagcgtat
    12301 taccgctgtt gccgcggatc acaccctgca ccagagcaaa ctgcagcggc tgggcaacca
    12361 gttgtgtacc accgttactg gcggtaatcg ctacattgta agaaccgttc ggcgcagtgc
    12421 tgccatcagt caacgtaccg tcccaggtga aactgtgaac tccggcggtc agttcaccaa
    12481 tatcaatggt gcgcacaacc gcgccatttt tatcggtgat ggtggccgta actttgtctg
    12541 ccgcctgttg cagctcaaca ccaaacggcg tggtcgtggt cacagcccct tcttcactgc
    12601 cggttcccgc aagaacagtt gtgccgggga tcatcacgcc gtgaccgatc aggttactgg
    12661 cctgtaacga ctggctgtta tcaatctgtc cggaaataga tccgagcatg gtattgagtt
    12721 tttcaatccc gctgaccgtg ctgatttgtg ccaattgcga cgtcagctcg ttgttttcca
    12781 ttggattggt cgggtcctgg tttttcagct gcgccaccag caaagtcaga aaactgcttt
    12841 gtaaatctgc ggcgttgctg cccgtgagcg aactactgct ggtggtactg acgccggtat
    12901 ttgtcggatc ggtggtggtt accgcaatgg acatagcttt ctcctttatt gaccgagcgt
    12961 aagggttttc agcatcatgc ttttcaccgt gttgagcact tcaacattgg cctgatagct
    13021 gcgtgacgcc gacatggtgt taaccatctc tccgacaaca tcaacgttcg gcatttttac
    13081 gtagcccttt gcatccgcca gcggattacc cggttcataa accagtttgt ccggggcctg
    13141 actttctata acatcggcaa cctttacgcc gcctgtcgca gcacctggtg cagcgttaac
    13201 ctggaatacc acctgttttg cccgatatgg ctgtccatcg ggaccggtca cgctatcagc
    13261 attcgccaga ttactggccg ccacgttcag gcgctgggac tgggcagtta acgccgaccc
    13321 ggcgatatca aaaatattca gcagtgccat ccgttaattt ccgctctgta aaacgttcat
    13381 catgcctttg atttgcccgc tcaacgcact aaggctcatc tggtattgca gttctgcggt
    13441 aggaggcgtc agcgcctgcg ccggaatgtg ttgcgttgag gtcatcgtca gagcaaccac
    13501 actggttgca tcccgtccac gttgcatgac ttttttaagt tcactggcaa aatcgatatc
    13561 gcgcgcctga taaccaaggg tatcggcatt ggcgatgttt gctgccagca cttcctgacg
    13621 ctgggcgcgc agattgagcg cctcttgttg aaaacgtaag gcggcgtcga gcttatcgag
    13681 catatctcct ccgcaggtat caaaattctg ccatcagctt aaatgccttt acgcgcgcgt
    13741 tatcggcgga ataaacgcaa aatgggtcgc tatttatgcc gttgatgacc attggggacg
    13801 ggtacaattc acgttgtaga aatagctggg gggcgaaaat gctggcaata aaacgtagcg
    13861 tggcgatcat cgcgatactg ttcagtccgt taagtgcggc gagcaatctc acatcgcaat
    13921 tgcacacctt ttttagcgcc cagctcgtgg gggtaagtga tgaggttcgt gtttctattc
    13981 gtacagcacc caatctacta ccgccgtgcg agcagccatt gctttcgatg agcaataatt
    14041 cccgcctgtg gggcaatgtg aatgtgttgg cacgctgcgg taacgacaaa cgatatttac
    14101 aggttaatgt gcaggccaca ggaaattatg tggttgccgc gatgcccatt gtgcggggag
    14161 gaaagctgga agctggcaat gtcaaactaa aacgcggacg actggatacc ctgccaccgc
    14221 gtacggtgct ggatatcaat caacttgttg atgccattag cctacgcgat ctatcacccg
    14281 atcaaccaat ccaattaacc cattttcgcc aggcatggcg ggtaaaagcg ggacaacgcg
    14341 tcaacgtgat cgccagcggt gacgggttta gcgccaacgc agaaggtcag gcgctgaaca
    14401 atgcagccgt cgcacagaat gcgcggatgc gcatggtatc gggactggtg gtcagcggcg
    14461 ttgttgatgc agatgggaat attcttataa acctgtaagc tgttaaagat tacccgtccc
    14521 ttgccgataa ataagcaaca catgataaaa gcgccctcaa tgaggaataa accatgagta
    14581 ttgatcgcac ttcgcctctg aatcccgtaa gcaccgttca accgcgcgaa accactgacg
    14641 cgccggtaac gaacacccgg gcggcaaaaa caaccgactc caccagcacc agcaccagca
    14701 ccagcaccag caccagcacc agcaccagca ccagtgtgac gttaagcgac gcgcaagcaa
    14761 aactgatgca acccggcagc agtgatatca atcttgaacg tgtcgaagcg ttaaaactgg
    14821 cgattcgtaa cggtgaacta aaaatggaca tcggcaaaat tgccgatgcg ctgatcaacg
    14881 aagctcagca agacttgcag agtaactgat cgtatgacac gtcttgcaga gatccttgac
    14941 cagatgtccg ctgtgcttaa cgatctcaaa acggtaatgg atcaagagca gcaacatctc
    15001 tctatggggc agatcaacgg cagccagttg caatggatta cagaacaaaa aagctcactg
    15061 ctggcgacgc tggattacct cgaacagtta cgcaagaaag aacccaatac agcaaatagc
    15121 gttgatatta gtcaacgctg gcaggaaatt actgtgaaaa cgcagcaact acgccaaatg
    15181 aatcaacata acggttggtt actggaagga cagattgagc gcaatcaaca ggcgctggaa
    15241 atgttgaaac cgcatcagga accgacgcta tatggggcga acggtcagac ctcaacaacc
    15301 catcgcggcg gtaaaaagat ttcgatctga agattatctc cggcctgcac tgcaggccgg
    15361 aatgcattgt tacaccgtcc ggcgggcaaa ttctttaact ttgaagccca gtaccgccag
    15421 tgcagcgaag tacgcggcaa tccccgccag cacgaccgcc attaaacgca gtaagcgcca
    15481 gggcatggta cccaatgacc actccggcat gatatgtaac atacctaaaa gcacgccaga
    15541 catcaccagt accgccacca ccagacgcaa cagaaacgcc atccagccgg gttgcggagt
    15601 aaagattttc tgcttacgca actgccagta aagcagcgaa gcattcagac acgccgccag
    15661 accaatagaa agtgacagcc cggcatgttt caacggacca ataaacgcca ggttcatcaa
    15721 ttgcgttaaa atcagcgtaa cgatggcaat tttcactggc gttttaatgt cctggcggga
    15781 ataaaagcca ggagccaaca ctttcactac aatcaggcca atcaaaccca ccgagtaggc
    15841 aattaacgcc cgctgggtca tcagcgcatc aaacgcggta aatttaccgt actggaacag
    15901 cgaaacggtt aacggacctg aaagaatgcc caacgcaacc gcactcggca gcgccaacag
    15961 gaaacaaaga cgcaaccccc agtccatcaa acggttgtat tcatcatgat tgccactggc
    16021 aaaacttttc gacagcgacg gcagcaaaat ggtgccaagc gccacgccca gcacaccgga
    16081 cggaaactcc attaagcggt cggcgtaata catccaagac accgaaccgg aagcaagaaa
    16141 cgaggcaaaa atggtgttga tgattaagga gatctggctc acagagacgc caaggatcgc
    16201 cggtcccatc tgtttcacca cgcgcattgc tccggcatcg tggaagttaa tgcgcggcag
    16261 gaccagcatg ccgatcttct tcaggtgcgg tagctgatac accagctgca ggatgccgcc
    16321 gaccgtaaca gcccacgcca gcgccagcac cggtgggtta aagtacggtg cggcaaacag
    16381 cgcgaaacca atcatgctga tgttaagcag tgttggcgca aacgccggaa tcgagaagcg
    16441 gttccacgta ttcagaatcg ctcccaccag cgacgccagg gagatcagca agatataggg
    16501 aaaggtaatc tttagtagct ggctggtcag ggcaaatttg tcagctgtat cagcgaagcc
    16561 tggcgcggtc accatgatca cccacggtgc ggcgagcatg ccagcgaccg tcacaaccgc
    16621 cagcgcaagt gtcagcaggc cagaaacata agagacaaag acccgcgtgg cgtcttcacc
    16681 ctgcttactt ttatattccg ccagaatcgg tacaaatgcc tgggaaaatg ccccttcggc
    16741 aaagatacgg cgtaacaagt taggaagttt aaaagcgacg aaaaaggcgt cggttgccat
    16801 ccctgcgcca aagattctgg cgacaattgc gtctcgtgcg aagccaagca cacgcgaaaa
    16861 catggtcatc gagctgacgg cggccagcga ttttaataaa ttcatcggtg ttctaatcca
    16921 gaccaacggg caaaacgcct gcaagacagg cgctgaaaga ggcgaatagt ctacctggat
    16981 tatggtgaat tgctaccgcc agatgttaca gggtttattc actcatcgca tcgcgccaga
    17041 tcttgtcaac gatacgttgc gccagcacgg cctattcgcc ggcggtttgc ggaactgtct
    17101 gattttgcac acattcaatg aagtgccgcg cacagccgac aaatccacgt tgttcaagag
    17161 tgctctgcca accaggaatc ggtttatgca ctacgccctg cccgcgctcc tcacgccatt
    17221 cgcgcatatc cgtaatgtcg atgagcgcac cgtcagtcac ggcctgcacg gtttcacgct
    17281 gacttccggc acggcgatgc atacaggtgg tgatctgcaa aggaccggcc gaaaaatggt
    17341 gctcggcaaa cagcatttcg ccagcgtcgt tagtcagtag cgtaccgcca tccagagagg
    17401 ctttgccgcc cgacaaccac agcgcggtat ccaccacatg cagataatca tccagcaacg
    17461 tgaaataaag atcgtgtggc ccgacactat tgctacgatg tttatccatt cttagcgaag
    17521 ctgcggtagc gagttgcgtt tttaactcac cgtagagtgg tgcgaaacga cggttaaaac
    17581 cgaccatcaa cgtcagtttt ttccgcgccg ccagttccac cagccgttca gcatcgcgca
    17641 gattttctgc cagcggttta tcgacacaga catgtacacc cgcattgagt aacgtactga
    17701 ccacgtcaaa gtggctggcg gtgctggaat gcacaaaaac cgcatcgcaa ctggcggcaa
    17761 ggctggataa cgaatcggca taaggaatgc gccagctttc acaaattggc agggctttcg
    17821 cgcgcgtagg cgaccaggct ccttgtaaca tccagtcaga cgctgccgcc agcaccggta
    17881 accacgcttt ttgcgcaatg ccgcctaatc ccacaacgcc gatacgtaat tttttcactt
    17941 taatctccca gatgggccag caacgaatca agacgctgtt tcagttctgc cacttcgatt
    18001 tccagggctt cgacgcgggc ctgtaaatca ccatcaaccg cgttcgacat atccgttacc
    18061 gccggctgat cctctacctc accactgaaa agatgcatgt agcggctttc gcgtttaccc
    18121 ggttcgcggg ccagacgcac cacaaaagga ccatcttcgc gatttgccag ttgttccagc
    18181 gtcgactcca attccgccat atcgctgaat tcatacattc gcgcggcgcg gctgcgcagt
    18241 tcacccggcg tctgggcacc acgcaataac aacgtggtga ttaacgccac ttccgctgcg
    18301 ctcagtttca gatcgccaaa ttctgaatta caaaaacgtt gttcatattt ggtgacccga
    18361 ttaccaaagc cactcaccgt gcgcagataa tggcgtttga ccagattatc cagttgctcc
    18421 tgcacttcag attcactcag attcatgacc ggttcacggt tcgttttctg attacaggcc
    18481 gtgactacac cattgactga gagcgggtat tgctccggcg tggtcacctg cttttccagc
    18541 aagcaaccaa tcacgcgagc ttcaagggca gtaagttgat atttcatgag attctcctta
    18601 gcggccgggc gtccagtctg gggtagttaa tgccgtcagt acgtgatcgc gccattgtcc
    18661 atcaatcaac agatagtctt tcgcatagcc ttctttttca aaacccagtc gcgccagtaa
    18721 atcaccgctg cgtttattgt gcggcatata attagccata atgcgatgaa tatgttgggt
    18781 gcgctgcata taacgaatgg ctgcggtcag ggcttcaaac atgagtcctt tgccctgcca
    18841 tttttgccca atcgaataac cgagatagca ggcatgaaaa gagccacgaa caacattgga
    18901 aaaattggca acgccaataa tctctttttc gtccgggtcg aataagccaa agtagaaagc
    18961 tgaaccttgt ttatgaaatt cgttaatcat ccccagcctg gcctgccagc ctgatggata
    19021 acagtggctt tcgtcgcgca ctggctccca gggcttgagg aaatggcgat tctctgcgta
    19081 ataatccgca agacgccagg catcacgatc atgcaccaga cgcacgacca gtcggtctgt
    19141 ggttaagcgc acttttggca cgttactgcg atagccaaac attctatacc tactccttcc
    19201 cgtaacgtct ttaatacgct gtaagtatta ctatacctgc gcaaccagac cctgtgaaaa
    19261 gtccaaaatg ccattttctg cattattcac atatttgata aaaactctct atcaaagcga
    19321 cgttttgata aaaaaatatt gtccccgaag tgatgggaaa agtcttagcg gcaatgcaga
    19381 atagaaagtg ctcatctttt atttcccggg aggggaaatg tcccgcgtat cgcaggcgag
    19441 gaacctgggt aaatatttcc tgctcatcga taatatgctg gtcgtgctgg ggttctttgt
    19501 tgtcttcccg ctgatctcta tccgcttcgt tgatcaaatg ggctgggccg ccgtcatggt
    19561 cggtattgct ctcggtctac gccagtttat tcagcaaggt ctgggtattt tcggcggcgc
    19621 aattgccgac cgctttggtg ccaaaccgat gattgttacc ggtatgctga tgcgcgccgc
    19681 cggattcgcc acaatgggta tcgcccacga accgtggcta ttgtggtttt catgcctgct
    19741 ctcgggactc ggcggcacgt tgtttgatcc gccgcgttcg gcgctggtgg tgaaactaat
    19801 ccgtccacaa caacgtggtc gttttttctc gctgttgatg atgcaggaca gtgccggtgc
    19861 ggtcattggc gcattgttgg ggagctggct gttgcaatac gactttcgcc tggtctgcgc
    19921 cacaggggcc gttttgtttg tgctgtgtgc ggcgttcaat gcgtggttgt taccggcatg
    19981 gaaactctcc accgtacgca cgcccgttcg cgaaggcatg acccgcgtga tgcgtgacaa
    20041 gcgttttgtc acctatgtcc tgacgctggc gggttactac atgctggctg tacaagtgat
    20101 gctgccaatt atggtcaacg acgtggctgg cgcgccctct gccgttaaat ggatgtatgc
    20161 cattgaagcg tgtctgtcgt taacgttgct ctaccctatc gcccgctgga gtgaaaagca
    20221 ttttcgtctg gaacaccggt tgatggctgg gctgttgata atgtcattaa gcatgatgcc
    20281 ggtgggcatg gtcagcggcc tgcaacaact tttcaccctg atttgtctgt tttatatcgg
    20341 gtcgatcatt gccgagcctg cgcgtgaaac cttaagtgct tcgctggcgg acgcaagagc
    20401 tcgcggcagc tatatggggt ttagccgtct gggtctggcg attggcggcg ctattggtta
    20461 tatcggtggt ggctggctgt ttgacctggg caaatcggcg caccagccag agcttccgtg
    20521 gatgatgctg ggaattattg gcatcttcac tttccttgcg ctgggttggc agtttagtca
    20581 gaaacgcgcc gcgcgtcgtt tgctggaacg cgacgcctga tttgatactc ccccctgact
    20641 cctccatact gaaagtgaac tgacagccaa atggaggagt cacgtgaagc tatacattta
    20701 cgatcactgc ccttactgcc tcaaagcccg catgattttc ggcctgaaaa atatccccgt
    20761 cgaattacat gttctgctca acgacgacgc agaaacaccc acccggatgg tcggtcaaaa
    20821 acaggttccc attctgcaaa aagatgacag ccgctatatg ccagaaagca tggatatcgt
    20881 tcactatgtc gataaactcg acggcaaacc gttactgacc ggcaaacgtt cccctgccat
    20941 tgaagagtgg ctgcgcaagg tcaatggcta cgccaacaaa ctgctgttgc cgcgttttgc
    21001 caaatcggca tttgatgagt tttctactcc cgccgcgcgc aaatatttcg tcgacaagaa
    21061 agaggccagc gcgggtaatt ttgccgacct gctggcccac tctgacggtc tgattaagaa
    21121 tatcagcgat gatttgcgtg cgctggacaa actgatcgtc aaaccgaacg ccgtgaatgg
    21181 agaactttcg gaagatgata ttcagctatt tccgctactg cgtaatctga cgctggtagc
    21241 cggaatcaac tggccaagcc gcgttgctga ttaccgcgat aatatggcga aacagacaca
    21301 aatcaatttg ttatcatcaa tggcgattta atcctgaccc gccgcggcag cctgtattcg
    21361 cgggttgccg ccgttttcag ttttttctgc tggcgagttt atcgctggtg acacatgctg
    21421 cgttgtgtca ggatattgac gcagatttca tgtcgaggac taccatgaac aagtttttat
    21481 ttgccgctgc attgatcgtc agtggcctgc tcgttggctg taatcaactc acccaataca
    21541 ccatcaccga acaagaaatt aaccagtcgc ttgcgaaaca taataatttc tcaaaagata
    21601 tcggtttacc cggcgtggct gacgcccata ttgttctgac aaacttgacc agccaaattg
    21661 gtcgcgaaga gccgaataag gttaccctaa ccggagacgc caatctggac atgaactccc
    21721 tgttcggtag tcagaaagcg accatgaaac tgaagctgaa agcgctgccc gtgtttgata
    21781 aagaaaaagg tgcgatcttc ctgaaagaga tggaagtggt cgatgcgacg gtacaaccgg
    21841 aaaaaatgca aacggtgatg caaacgttgc ttccctattt gaaccaggca ttacgcaatt
    21901 actttaacca gcaacctgct tacgtcctgc gcgaagatgg cagtcagggc gaagcaatgg
    21961 cgaaaaaact ggcgaaaggc attgaagtga agccaggcga aattgtcatt ccgtttacgg
    22021 attaatgacg agggcgcatt cgcgcccttt atttttcgtg caaaggaaaa cgtttccgct
    22081 tatcctttgt gtccggcaaa aacatccctt cagccggagc atagagatta atgactgcac
    22141 catcccaggt attaaagatc cgccgcccag acgactggca ccttcacctc cgcgatggcg
    22201 acatgttaaa aactgtcatg ccgtatacca gcgaaattta tggacgggct attgtaatgc
    22261 ccaatctggc tccgcccgtg accactgttg aggctgccgt ggcgtatcgc cagcgtattc
    22321 ttgatgccgt acctgccggg cacaatttca ccccattgat gacctgttat ttaacagatt
    22381 cgctggatcc taatgagctg gagcgcggat ttaacgaagg cgtgttcacc gctgcaaaac
    22441 tttatccggt aaacgcaacc actaactcca gccacggcgt gacgtcaatt gacgcaatca
    22501 tgccggtact tgagcgcatg gaaaaaatcg gtatgccgct actggtgcat ggtgaagtga
    22561 cacatgcaga tatcgacatt tttgatcgtg aagcgcactt tatagaaagc gtgatggaac
    22621 ctctgcgcca gcgcctgact gcgctgaaag tcgtttttga gcacatcacc accaaagatg
    22681 ctgccgacta tgtccgtgac ggaaatgaac ggctggctgc caccatcact ccgcagcatc
    22741 tgatgtttaa ccgcaaccat atgctggttg gtggcgtgcg tccgcacctg tattgtttac
    22801 ccatcctcaa acgcaatatt caccaacagg cattgcgtga actggtcgcc agcggtttta
    22861 atcgagtatt cctcggtacg gattctgcgc cacatgcacg tcatcgcaaa gagagcagtt
    22921 gcggctgcgc gggctgcttc aacgccccaa ccgcgctggg cagttacgct accgtctttg
    22981 aagagatgaa tgctctgcag cactttgaag cattctgttc tgtaaacggc ccgcagttct
    23041 atggcttgcc ggtcaacgac acattcatcg aactggtacg tgaagagcaa caggttgctg
    23101 aaagcatcgc actgactgat gacaccctgg tgccattcct cgccggggaa acggtacgct
    23161 ggtccgttaa acaataaaaa tcgtagcttc ctgttgtcat taggttattt tacctgtata
    23221 aataaccagt atattcaaca gggggctatt atgcgaattg aagtcaccat agcgaaaact
    23281 tctccattgc cagctggggc tattgacgcc ctggctggcg aactttcccg ccgtattcag
    23341 tatgcgtttc ctgataatga aggccacgta tcggtacgtt atgccgcagc gaataattta
    23401 tcggttattg gcgtaacaaa agaagataaa cagcgcatta gcgaaattct ccaggaaacg
    23461 tgggaaagcg ccgatgactg gtttgtcagc gaataatatg cagtgatttt tgtttttgcc
    23521 gggtcgcccc ggctttttta ttttacttac aaattttgag tacaaaattt ctacacttcc
    23581 tcaaaataat tgcacaatat gctaaaaaaa tatgaatgac atgctgtttt attgttcata
    23641 taaatcttaa aagcagaaat ttatctgttc ccccctttaa aaattcggtg aataccctta
    23701 cttattggta tactgaagtt gcttcagata aaaacgcatt gaacctcgaa taacgttgtc
    23761 tagtaacacg aattaggggg ccatgatgga aaaaaataat gaagtcattc agactcatcc
    23821 gctcgtaggg tgggacatca gcaccgttga tagctatgat gcgctgatgt tgcgtttgca
    23881 ctaccagacc ccaaataagt ccgagcagga agggactgaa gttggtcaga cgctctggtt
    23941 aaccactgat gttgccagac aatttatttc gatattagaa gcaggaatcg ccaaaattga
    24001 atccggtgat ttcccggtaa acgagtatcg gcgtcattaa catgacatga ccatccaccc
    24061 aaaaggcacc tcaccggtgc ctttaccatt tctgggttgt atatctgcat tcagttaatt
    24121 actctgctta aaccatgaga gcagagagaa aaaaatgaaa tacgatctca tcattattgg
    24181 cagcggttcc gtaggcgctg ccgccgggta ttatgcaacc cgcgccggtt taaacgtgct
    24241 aatgaccgac gcccatatgc caccgcatca acacggcagc caccacggcg atacgcgatt
    24301 aattcgccat gcttatggtg aaggcgaaaa gtatgtcccg ttggtcctcc gcgcgcaaac
    24361 gctgtgggat gaactttccc gccacaacga agatgatccc atttttgtac gctctggtgt
    24421 cattaacctc ggcccggctg actccgcatt tctcgccaac gtcgcccaca gcgccgaaca
    24481 gtggcaactc aacgttgaaa agctcgatgc gcaagggatt atggcccgct ggccagaaat
    24541 acgcgtcccg gacaactaca tcggcttatt tgagactgat tccggttttt tgcgcagcga
    24601 actggcgatt aaaacctgga tccaactggc gaaggaagcg ggctgtgcgc aactgttcaa
    24661 ctgcccggtc accgcaattc gtcatgacga tgatggcgta actattgaaa ccgttgacgg
    24721 tgagtatcag gcgaaaaaag cgattgtctg cgcgggaaca tgggtaaaag acctgctccc
    24781 ggagctgcct gtccagcctg tacgtaaagt atttgcctgg tatcaggccg atggccgcta
    24841 tagcgtgaag aataaattcc cggcgtttac cggtgaactg cccaatggcg atcaatatta
    24901 tggttttccg gcagaaaacg acgcgttgaa gattggcaaa cataacggag gccaggttat
    24961 ccattcagcg gatgaacgtg ttccgtttgc ggaagtggtc agcgatggtt cggaagcctt
    25021 cccgttcttg cgcaatgtat tgccgggtat cggttgctgc ctgtacggcg ctgcctgcac
    25081 ctatgataat tcgcctgacg aagattttat tatcgatacc ctacccggcc acgataatac
    25141 actgctcatt accggcctga gtgggcacgg ttttaaattt gcgtcagttt taggggaaat
    25201 agctgccgat tttgcgcaag acaaaaaaag cgattttgat ttgacgccat tcaggctttc
    25261 ccgcttccaa taatcatcat tacggcctcc agaatgaggc cgtttttaca ggagtattta
    25321 atgcgtcggc tgttgcacta tctcatcaat aatattcgcg agcatctgat gctttatctt
    25381 tttctctggg gattgttggc aattatggat ctgatctatg tgttttattt ttagttttcc
    25441 gcactgacat aaactgacaa atatttaatc tccctttcat ttagcgtgaa aaattgaatg
    25501 agattattcc tgcttctaca gcactcacca gacatctctg atgctgaacc cactaaactt
    25561 atgaagattc tttcattatt aattcaaaat tattgaaata aaaataaata tcattcaatt
    25621 tgttattttt gtgttgcaat tcattctccg acacgccatt ttctttctct cgcaaattcg
    25681 tattggatgc acttatgtca ttcacaaata cccctgaacg ctatggtgtt atatctgcgg
    25741 ccttccattg gctaagcgca attattgtct acggcatgtt tactttaggt ctgtggatgg
    25801 tcacgctcag ttattacgat ggctggtatc acaaagcacc cgaactgcat aaaagcatcg
    25861 gtattttgtt aatgatgggg ctggttattc gcgttctgtg gcgtgtcata tctccaccgc
    25921 cgggtccgct gccgagttat tcgcccatga ctcgtcttgc cgcaaaggct ggacatctcg
    25981 cattgtacct attgctgttc gccatcggca tcagcggcta tctgatctca actgccgatg
    26041 gtaaaccgat cagcgttttt ggctggtttg acgtccccgc gacccttgcc gacgctggcg
    26101 cacaggcaga ctttgccggt gccctgcatt tttggctcgc gtggagcgtc gtagtactgt
    26161 ccgttatgca cggatttatg gccctgaagc atcatttcat cgataaagac gacactctga
    26221 agcgcatgct gggaaagtcg tcatctgact atggagtata aaaaatgaaa aaaagcctgc
    26281 ttggtttaac cttcgcgtcc ctgatgttct ctgccggttc agcggttgcc gccgattaca
    26341 aaattgacaa agaaggtcag cacgcctttg ttaatttccg catccagcac cttggctata
    26401 gctggttata cggcaccttt gaagatttcg acggtacttt tacctttgac gaaaaaaatc
    26461 cggctgccga taaagtgaat gtgacaatta acaccaccag cgtcgatact aatcacgccg
    26521 aacgcgataa acatcttcgc agtgcagatt tcctcaatac cgcaaaatat ccacaggcaa
    26581 cattcacctc caccagcgtg aagaaagacg gtgacgaact ggatattacc ggcgatctga
    26641 cgctgaatgg cgtaaccaaa cccgtcacgc tggaagcgaa attaattggt cagggcgacg
    26701 acccatgggg tggtaaacgt gcaggcttcg aggccgaagg caaaattaag ctcaaggact
    26761 tcaatatcaa gacagattta ggtccagctt ctcaggaagt ggatctgatt atttcagtgg
    26821 aaggcgtaca gcagaagtaa gcgtgaaatg ttgccggatg gcacgcatcc ggcaatgata
    26881 tttattctgt tggatcagga atgcccagtg ttgtattcag acgtccacga gacttattaa
    26941 agatcttatt gccattttca cgtcctgccc gacggcgtcg ctgttcttct ggcggtaacg
    27001 cgctttcttc gcagcaaatc tcactacaac aacctttgta tttttccgcg catactggac
    27061 actgaataaa cagcaggtgg cagccatcat ttttacagtt ggtatggctg tcgcacggcg
    27121 cgccgcactg gtggcaatgc gcgataatct catccgatat acgttcgccc atccgctcgt
    27181 caaaaacaaa atttttgcca ataaaacgca ccggcaagcc ctgctcgcgc gccttacggg
    27241 cgtattcaat aattccgccc tcgatatgcc agactttgtt gaatccgtta tgtttcatcc
    27301 aagcactggc cttttcacaa cgaatgccgc cggtgcagta catgacgatt tttttatctt
    27361 tatgtgcctg catcatctcg actgcttttg gcagctgctc acggaaggta tctgccggaa
    27421 tttcgagcgc gttttcaaag tgccccactt catactcata gtggttac
//
LOCUS       DADMJB010000039        27203 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.039, whole genome shotgun sequence.
ACCESSION   DADMJB010000039 DADMJB010000000
VERSION     DADMJB010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27203
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.039"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(37..1335)
                     /gene="eno"
                     /locus_tag="JN078_001499"
     CDS             complement(37..1335)
                     /gene="eno"
                     /locus_tag="JN078_001499"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HAY9040746.1"
                     /translation="MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTG
                     SREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTEN
                     KSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHA
                     DNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGS
                     NAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHF
                     LEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKG
                     IANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQI
                     KTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA"
     gene            complement(1423..3060)
                     /gene="pyrG"
                     /locus_tag="JN078_001500"
     CDS             complement(1423..3060)
                     /gene="pyrG"
                     /locus_tag="JN078_001500"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase (glutamine hydrolyzing)"
                     /protein_id="HAY9040747.1"
                     /translation="MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPY
                     INVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRK
                     ERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQM
                     AVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPA
                     NERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEW
                     EQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVE
                     TRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARH
                     VANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVD
                     DSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPW
                     FVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK"
     gene            complement(3288..4079)
                     /gene="mazG"
                     /locus_tag="JN078_001501"
     CDS             complement(3288..4079)
                     /gene="mazG"
                     /locus_tag="JN078_001501"
                     /EC_number="3.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
                     /protein_id="HAY9040748.1"
                     /translation="MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVL
                     DAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFAD
                     SSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWT
                     TLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQK
                     ANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL"
     gene            complement(4150..4485)
                     /gene="mazF"
                     /locus_tag="JN078_001502"
     CDS             complement(4150..4485)
                     /gene="mazF"
                     /locus_tag="JN078_001502"
                     /EC_number="3.1.27.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endoribonuclease MazF"
                     /protein_id="HAY9040749.1"
                     /translation="MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTG
                     MCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKRIAWRARGATKKGTVAPEELQLI
                     KAKINVLIG"
     gene            complement(4485..4733)
                     /gene="mazE"
                     /locus_tag="JN078_001503"
     CDS             complement(4485..4733)
                     /gene="mazE"
                     /locus_tag="JN078_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin MazE"
                     /protein_id="HAY9040750.1"
                     /translation="MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLII
                     EPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW"
     gene            complement(4811..7045)
                     /locus_tag="JN078_001504"
     CDS             complement(4811..7045)
                     /locus_tag="JN078_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase"
                     /protein_id="HAY9040751.1"
                     /translation="MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQ
                     QTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKS
                     VVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHL
                     REVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLL
                     HERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDV
                     RAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTV
                     EIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGE
                     MLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVP
                     FTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAG
                     RQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNK
                     PSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGF
                     ITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRD
                     ITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARR
                     LHGS"
     gene            complement(7093..8394)
                     /gene="rlmD"
                     /locus_tag="JN078_001505"
     CDS             complement(7093..8394)
                     /gene="rlmD"
                     /locus_tag="JN078_001505"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HAY9040752.1"
                     /translation="MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGL
                     LPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQR
                     SKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVK
                     QCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREK
                     LERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVA
                     SALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ
                     NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPA
                     TLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK"
     gene            8451..11207
                     /gene="barA"
                     /locus_tag="JN078_001506"
     CDS             8451..11207
                     /gene="barA"
                     /locus_tag="JN078_001506"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase BarA"
                     /protein_id="HAY9040753.1"
                     /translation="MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDA
                     GASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFH
                     LDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYI
                     ALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRR
                     GQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQN
                     VELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTI
                     ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTL
                     NIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIR
                     DTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNR
                     GSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYS
                     PTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKL
                     KQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKL
                     IGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQ
                     QTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPE
                     VNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGL
                     VDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREAS
                     KILG"
     gene            complement(11439..12779)
                     /gene="gudD"
                     /locus_tag="JN078_001507"
     CDS             complement(11439..12779)
                     /gene="gudD"
                     /locus_tag="JN078_001507"
                     /EC_number="4.2.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
                     /protein_id="HAY9040754.1"
                     /translation="MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIMIIK
                     DNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQ
                     TFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGDRKAT
                     PLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAE
                     SIVALAQRFPQARITLDPNGAWLLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMA
                     EFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGL
                     TWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQV
                     PEKPGLGVEIDMDQVMKAHELYQKHGLCARDNAMGMQYLIPGWTFDNKRPCMVR"
     gene            complement(12800..14140)
                     /locus_tag="JN078_001508"
     CDS             complement(12800..14140)
                     /locus_tag="JN078_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708582.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
                     /protein_id="HAY9040755.1"
                     /translation="MTTQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTD
                     NAGHTGIGEAPGGEVIYQTLVDAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGA
                     WTFELHVNAVAALEAALLDLLGKALNVPVCELLGPGKQRETITVLGYLFYIGDRTKTD
                     LPYLENTPGNHEWYQLRHQKAMNSEAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDT
                     VRALKKRFPDARITVDPNGAWLLDEAISLCKGLNDVLTYAEDPCGAEQGFSGREVMAE
                     FRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLT
                     WGCHSNNHFDISLAMFTHVGAAAPGNPTAIDTHWIWQEGDCRLTKNPLEIKNGKIAVP
                     DAPGLGVELDWEQVQKAHEAYKRLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH"
     gene            complement(14142..15512)
                     /locus_tag="JN078_001509"
     CDS             complement(14142..15512)
                     /locus_tag="JN078_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9040756.1"
                     /translation="MFRSATTSSLSQAASSVEKRTNARYWIVVMLFIVTSFNYGDRAT
                     LSIAGSEMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWS
                     MFTLLQGFVDIFSGFGIIVALFTLRFLVGLAEAPSFPGNSRIVAAWFPAQERGTAVSI
                     FNSAQYFATVIFAPIMGWLTHEVGWSHVFFFMGGLGIVISFIWLKVIHEPNQHPGVNQ
                     KELEYIAAGGALINMDQQNTKVKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYF
                     FITWFPVYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGSLNIARKT
                     PIVMGMLLSMVMVFCNYVNVEWMIIGFMALAFFGKGIGALGWAVMADTAPKEISGLSG
                     GLFNMFGNISGIVTPIAIGYIVGTTGSFNGALIYVGVHALIAVLSYLVLVGDIKRIEL
                     KPVAGQ"
     gene            complement(15929..16378)
                     /locus_tag="JN078_001510"
     CDS             complement(15929..16378)
                     /locus_tag="JN078_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin"
                     /protein_id="HAY9040757.1"
                     /translation="MAEIGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPELSDW
                     LPYQDKYVLVVTSTTGQGDLPDSIVPLFQGIKDSLGFQPNLRYGVIALGDSSYVNFCN
                     GGKQFDALLQEQSAQRVGEMLLIDASENPEPETESNPWVEQWGTLLS"
     gene            complement(16396..17178)
                     /gene="truC"
                     /locus_tag="JN078_001511"
     CDS             complement(16396..17178)
                     /gene="truC"
                     /locus_tag="JN078_001511"
                     /EC_number="5.4.99.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(65) synthase TruC"
                     /protein_id="HAY9040758.1"
                     /translation="MLEILYQDEWLVSVNKPSGWLVHRSWLDRDEKVVVMQTVRNQIG
                     QHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDY
                     PLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGR
                     KHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLT
                     IHAGLDDTWMQALSQFGWRGLLPENERVEFSAPSGQDGEISS"
     gene            complement(17178..17507)
                     /locus_tag="JN078_001512"
     CDS             complement(17178..17507)
                     /locus_tag="JN078_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqcC family protein"
                     /protein_id="HAY9040759.1"
                     /translation="MTTHDRVRLQLQALEALLREHQHWRNDEPQPHQFNSTQPFFMDT
                     MEPLEWLQWVLIPRMHDLLNNNQPLPGAFAVAPYYEMALATDHPQHALILAELEKLDA
                     LFADDAS"
     gene            complement(18129..18674)
                     /gene="syd"
                     /locus_tag="JN078_001513"
     CDS             complement(18129..18674)
                     /gene="syd"
                     /locus_tag="JN078_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SecY-interacting protein"
                     /protein_id="HAY9040760.1"
                     /translation="MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIIST
                     TEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQ
                     TWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGT
                     RKRTHLASNLAEFLNQLKPLL"
     gene            18742..19590
                     /gene="queF"
                     /locus_tag="JN078_001514"
     CDS             18742..19590
                     /gene="queF"
                     /locus_tag="JN078_001514"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HAY9040761.1"
                     /translation="MSSYANHQALAGLTLGKSTDYRDTYDASLLQGVPRSLNRDPLGL
                     KADNLPFHGTDIWTLYELSWLNAKGLPQVAVGHVELDYTSVNLIESKSFKLYLNSFNQ
                     TRFNNWDEVRQTLERDLSTCAQGKISVALYRLDELEGQPIGHFNGTCIDDQDITIDNY
                     EFTTDYLENATCGEKVVEETLVSHLLKSNCLITHQPDWGSIQIQYRGRQIDREKLLRY
                     LVSFRHHNEFHEQCVERIFNDLLRFCQPEKLSVYARYTRRGGLDINPWRSNSDFVPST
                     TRLVRQ"
     gene            19702..21066
                     /gene="ppnN"
                     /locus_tag="JN078_001515"
     CDS             19702..21066
                     /gene="ppnN"
                     /locus_tag="JN078_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide 5'-monophosphate nucleosidase"
                     /protein_id="HAY9040762.1"
                     /translation="MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNS
                     GSLTDNSKELLSRFENFDINVLRRERGVKLELINPPEEAFVDGRIIRALQANLFAVLR
                     DILFVYGQIHNTVRFPNLNLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSIN
                     ENEYLYARRVGNQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPS
                     IIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPA
                     NKDQVLPLILTGPKESADYFRVLDEFVVHTLGENARRHYRIIIDDAAEVARQMKKSMP
                     LVKENRRDTGDAYSFNWSMRIAPDLQMPFEPSHENMANLKLYPDQPVEVLAADLRRAF
                     SGIVAGNVKEVGIRAIEEFGPYKINGDKEIMRRMDDLLQGFVAQHRMKLPGSAYIPCY
                     EICT"
     gene            21623..22912
                     /locus_tag="JN078_001516"
     CDS             21623..22912
                     /locus_tag="JN078_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
                     /protein_id="HAY9040763.1"
                     /translation="METTQTSTIASKDSRSAWRKTDTMWMLGLYGTAIGAGVLFLPIN
                     AGVGGMIPLIIMAILAFPMTFFAHRGLTRFVLSGKNPGEDITEVVEEHFGIGAGKLIT
                     LLYFFAIYPILLVYSVAITNTVESFMSHQLGMTPPPRAILSLILIVGMMTIVRFGEQM
                     IVKAMSILVFPFVGVLMLLALYLIPQWNGAALETLSLDTASATGNGLWMTLWLAIPVM
                     VFSFNHSPIISSFAVAKREEYGDMAEQKCSKILAFAHIMMVLTVMFFVFSCVLSLTPA
                     DLAAAKEQNISILSYLANHFNAPVIAWMAPIIAIIAITKSFLGHYLGAREGFNGMVIK
                     SLRGKGKSIEINKLNRITALFMLVTTWIVATLNPSILGMIETLGGPIIAMILFLMPMY
                     AIQKVPAMRKYSGHISNVFVVVMGLIAISAIFYSLFS"
     gene            22970..24337
                     /gene="sdaB"
                     /locus_tag="JN078_001517"
     CDS             22970..24337
                     /gene="sdaB"
                     /locus_tag="JN078_001517"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase II"
                     /protein_id="HAY9040764.1"
                     /translation="MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARNLLKDVTR
                     VVVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDSIPGFIQDVNTHGRLMLANGQ
                     HEVEFPVDQCMNFHADNLSLHENGMRITALAGDKVVYSQTYYSIGGGFIVDEEHFGQQ
                     DSAPVEVPYPYSSAADLQKHCQETGLSLSGLMMKNELALHSKEELEQHLANVWEVMRG
                     GIERGISTEGVLPGKLRVPRRAAALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENA
                     AGGRVVTAPTNGACGIIPAVLAYYDKFIREVNANSLARYLLVASAIGSLYKMNASISG
                     AEVGCQGEVGVACSMAAAGLAELLGASPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPC
                     IERNAIAAVKAVNAARMALRRTSEPRVCLDKVIETMYETGKDMNAKYRETSRGGLAMK
                     IVACD"
     gene            24359..25204
                     /gene="xni"
                     /locus_tag="JN078_001518"
     CDS             24359..25204
                     /gene="xni"
                     /locus_tag="JN078_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311685.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flap endonuclease Xni"
                     /protein_id="HAY9040765.1"
                     /translation="MRGLFPISHPAVACSGIECYPYRLIFKGVIVAVHLLIVDALNLI
                     RRIHAVQGSPCVETCQHALDQLIMHSQPTHAVAVFDDENRSSGWRHQRLPDYKAGRPP
                     MPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLAATLAVKVTQAGHQATIVSTDKGY
                     CQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPDYWGLAGISSSKVPGVAGIGPK
                     SATQLLVEFQSLEGIYENLDAVAEKWRKKLETHKEMAFLCRDIARLQTDLHIDGNLQQ
                     LRLVR"
     gene            complement(25309..26446)
                     /gene="fucO"
                     /locus_tag="JN078_001519"
                     /pseudo
     CDS             complement(25309..26446)
                     /gene="fucO"
                     /locus_tag="JN078_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417279.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lactaldehyde reductase"
     gene            complement(26474..27121)
                     /gene="fucA"
                     /locus_tag="JN078_001520"
     CDS             complement(26474..27121)
                     /gene="fucA"
                     /locus_tag="JN078_001520"
                     /EC_number="4.1.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculose-phosphate aldolase"
                     /protein_id="HAY9040766.1"
                     /translation="MERNKLARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTG
                     IPYEKLTESHIAFIDGNGKHEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVS
                     ILNRPIPAIHYMIAAAGGNSIPCAPYATFGTRELSEHVALALKNRKATLLQHHGLIAC
                     EVNLEKALWLAHEVEVLAQLYLTTLAITDPVPVLSDEEIAVVLEKFKTYGLRIEE"
BASE COUNT         6581 a         7295 c         6553 g         6774 t
ORIGIN      
        1 cggaggctgg catttttaaa tcagataaag tcagtcttat gcctggcctt tgatctcttt
       61 acgaccgttg tacggtgctt tttcgcccag agcttcttcg atacgaatca gctggttgta
      121 tttagcaaca cggtcagaac ggctcataga accagttttg atctggcctg cagcagtacc
      181 aacagccagg tcagcgatgg tagcgtcttc agtttcgcca gaacggtgag agataactgc
      241 agtgtagcca gcatctttcg ccatcttgat tgcagccaga gtttcggtca gagaaccgat
      301 ctggttgaat ttgatcagga tggagttagc gatacctttt tcgatacctt ctttcaggat
      361 cttggtgttg gttacgaaca ggtcgtcacc aaccagctgg attttgtcgc ccagaacttt
      421 ggtctggtat gcgaaaccgt cccagtcaga ttcgtccaga ccgtcttcga tagaaacgat
      481 cgggtactgt ttggtcagtt cttccaggaa gtgagtgaat tcttcagagg tgaacgcttt
      541 gttgccttcg ccagccagaa cgtatttacc atctttgtag aattcagaag ctgcgcagtc
      601 catcgccaga gtgatgtctt tgcccagttc ataaccagca gctttaacag cttcagcgat
      661 aacagccaga gcttcagcgt tggaacccag gttcggcgca tagccacctt cgtcaccaac
      721 agcagtattc atgcctttcg ctttcagaac ttttgccagg tgatggaaaa cttcagaacc
      781 catgcggatg gcttctttca cagttttcgc gccaaccggc tgaatcatga attcctggat
      841 atcaacgttg ttgtcagcgt gctcaccacc gttgatgatg ttcatcatcg gaaccggcat
      901 agagtatttg cccggagtac cgttcagttc agcgatgtgc tcgtacagcg gcataccttt
      961 agcagctgca gcagctttgg cgttagccag agatacagcc aggattgcgt tcgcgccgaa
     1021 tttggatttg ttttcggtgc cgtccaggtc gatcatgatc ttgtcaatgc cagcctgatc
     1081 tttagcatct ttgccaatca gcgcctgagc gatcgggccg tttaccgcag caacagcttt
     1141 ggttacgcct ttacccagga aacgggattt gtcgccatcg cgcagttcca gagcttcacg
     1201 ggaaccagta gaagcacctg acggagcagc tgccataccg acgaaaccac cctccagatg
     1261 tacttcggct tcaacagtcg ggttaccacg ggagtcgatg atttcacgac cgatgatttt
     1321 tacgattttg gacattaggt tttcctcaag tcactagtta aactgaaact ccagacaaac
     1381 aacacgtacc cagggtacgc gttgccgttc taactttttt acttacttcg cctgacgttt
     1441 ctggaactcg ctggcggctt tcacaaagcc tgcaaacagc gggtgaccat cacgtggagt
     1501 agaagtaaac tccggatgga actggcaagc cacgaaccac gggtgattcg gaacttcgat
     1561 gatctcgacc aactgatcat ccccggaacg gcccgcaacg cgcagacctg catcttcaat
     1621 ctgtttcaac agcatgttgt tgacttcgta acggtgacga tgacgctcaa caattgtcgg
     1681 cgcattgtac agctggcgaa ccaggctatc gtcaaccaac tggcactgct gtgcgccgag
     1741 acgcatggta ccgccgagat cgctcttctc gctacgaact tcaacgttgc cgttttcatc
     1801 gcgccactcg gtaatcagcg ccacaaccgg gtacttacag tctggcacaa attccgtaga
     1861 gttggcgttc tccatgttgg caacatggcg agcgtaatca attaacgcca cctgcatacc
     1921 caggcaaatg cccagataag gaatattgtt ctcacgcgca aaacgcgcgg tcgtaatcat
     1981 gccttctacg ccacgatagc cgaaaccgcc aggtacgagg attgcgtcca gacctttaag
     2041 gatttcaacg ccgcgcgttt caacatcttg tgaatcgatc agtttgatgt tgacgctgac
     2101 acgattcttc agcccaccgt gtttcagtgc ttcgatcact gatttataag catccggcag
     2161 ttcaatgtac ttgccgacca taccgatggt gacttcactt accgggttcg cttcttcgaa
     2221 gataacctgt tcccattcgg acagattcgc ttccgggcag tttaagctga atcgtttaca
     2281 aatataatcg tccagcccct gagatttcaa caggcccgga attttataga tggaatcgac
     2341 gtctttcaga gaaataaccg ctttttccgg aacattacag aacaatgcaa tcttcgcacg
     2401 ttcgttcgcc ggaacagcgc gatctgaacg acaaatcagg atgtcaggct ggataccgat
     2461 ggagagcagc tcttttacag agtgctgagt cggtttggtt ttgacttcac cagacgctgc
     2521 catgtacggc accagcgtca ggtgcataaa cagagtgtgc tcacggccaa tttcaacagc
     2581 catctggcga atcgcttcga ggaacggcaa ggattcgata tcacctactg taccgccgat
     2641 ttctaccagt actacgtcat gaccttcgcc accttccagc acgcgctctt tgattgcgtt
     2701 agtgatgtgc ggaataacct gcacggttgc gccgaggtag tcaccgcggc gttctttacg
     2761 cagaacgtca gagtagatac gacccgtggt gaagttgttg cggcggctca ttttggtacg
     2821 aatgaaacgc tcgtagtgcc ccaggtccag gtcggtttca gcgccgtctt cagtaacgaa
     2881 cacttccccg tgttggattg ggctcatagt acctggatcg acgttgatgt acggatccag
     2941 tttcatgatg gtcacattga ggccacgggc ttcaagaatg gctgcgaggg aggctgcggc
     3001 aatgccttta cccagagagg atacgacccc gccggtcaca aaaatatagt tcgttgtcat
     3061 gctgaacctg agaagttagg ttgaaaagac gatggaataa ccaggacggg aaagcagtat
     3121 acccgaacat gacctgtgcc acaaactttc attatccctc ctcttcgcca gcgcactatt
     3181 gaaatcagga gtgagaaaat agcccctttg gggtaaatgt ttttgacgca aatcaagcgc
     3241 ttgtcattta aaaaatgaca caaatggcac ttgaccgcgt aattccctta gagatcaatt
     3301 tcctgccgtt ttacctgttg ccagacttct tccattgttt cgaggtcaac acctgtcatt
     3361 tccagtccac gcgcggcaac aatacgctcc acttcgcgaa aacgacgctc gaatttttcg
     3421 ttcgcttttt gcaatgcgat ttctgctttc gtccctaaat ggcgagccag attaaccgtg
     3481 gcaaacagca ggtcccccat ttcctcctcc agtttagcct ggtcgacaac agcctgccgc
     3541 gcttcgtaca tcacctcgtc gatctcttcg tagactttat caaccaccgg gccaagcgtc
     3601 gtccagtcga agccaacgtt ggcgcaacgt ttctggattt tttgcgcccg cattaaagcc
     3661 ggtaaactac gaggaatatc gtccagcgcc gaatgctgcg ctttctgcgc gcgctcttcg
     3721 gttttgattt gctcccaacg ggcaagcact tcactactgt tttcggcaga actatcagca
     3781 aaaacatgcg gatggcgacg ctctaattta tcgctaatag cagcgcaaat atcattaaag
     3841 tcaaagcgcc cttcttcctg agccatttgc gcgtaaaaca ccacctggaa tagcagatcg
     3901 cccagttcac cgcgaagatc gtcaaaatct tcacgggcga tggcgtccag cacttcgtag
     3961 gtttcttcaa gggtgtaagg cgcaatggtg gcaaatgtct gctctttatc ccacgggcag
     4021 ccgttttccg gatcgcgcag gcgctgcata atagtgagca aacgatcgat ttgattcatt
     4081 gaattgtcct gaaaattgcg ggtctgtcag gtggaaacct gtgaccagaa tagaagtgag
     4141 ttagtaacac tacccaatca gtacgttaat tttggcttta atgagttgta attcctctgg
     4201 ggcaactgtt cctttcttcg ttgctcctct tgcccgccag gcgattcttt ttacctgatc
     4261 agctaacgct acgccatcac gttcctgacc ggataaaaca acttcgaacg gatatccttt
     4321 tgattgcgtt gtacaaggaa cacacagaca catacctgtt ttgttgttgt acatgaaagg
     4381 actcaggaca acagctggac gatgtccagc ttgctcgcta ccttttgtcg ggtcaaaatc
     4441 aacccaaatc agatcgccca tatcgggtac gtatcggctt accattacca gacttcctta
     4501 tctttcggct ctccccagtc gatattctcg tggaggtttt ccggcgtgat gtcgttgacc
     4561 agttcagcaa gcgtaaatac gggctcttta cgcactggct caataattaa tttgccatcc
     4621 accaggtcaa tcttcacttc atcatcaata ttcagattga gcgcctgcat taacgtagcc
     4681 gggatccgca ccgccggtga atttccccaa cgctttacgc tactgtggat catcaccctt
     4741 tcctcaaacc gctatcatat gtagatacag tatatatcaa tctacattgt agatacgagc
     4801 aaatttctgc ctaactcccg tgcaaccgac gcgcgtcgat aacatccggc acctggttga
     4861 gtttacccag cacgcggccc agcacctgca ggttgtaaat ctcaatggtc atgtcgatgg
     4921 tcgccagttg ctgtttggtg tcgctacggc tggcaacgcc aagtacgttc accttctcgt
     4981 tggcgagaat ggtcgtgata tcacgtaaca acccactacg atcattagcc accacgcgga
     5041 ccaccagcga atatccggcg gagtagctct caccccatac cgcgtcaaca atgcgttctg
     5101 gcgcatgaga gcgcagttcc gccagttgtt cgcaatcggc gcggtgtact gaaataccgc
     5161 gcccctgggt aatgaagccg acaatctcat ctccaggaat cggctggcag cagcgcgcga
     5221 tgtggtgcat caggttgcca acaccttcga ctaccacgcg accgttatct ttactgcggt
     5281 tttgcggcgt gtagcttttt tgctgaagtt gcttcagcgc ggcggcgtcc tgctcttcgg
     5341 cactcggctt attaaattgc gattgcagga agttcaccat ctgattgaga cggatatccc
     5401 cgccaccaat cgccgccagc aactcgtcga catcattaaa gttgtaacgc ggcagcagat
     5461 gtttttctgc ttctttcagg ctgatcccca gatgttccag ctcgtcgtca aggatttgcc
     5521 gcccagccag aatgtttttg tcacggtcct gtttacggaa ccaggcgtga attttcgaac
     5581 gcccacggct ggttgtgacg taaccgaggt ttgggtttaa ccagtcacgg ctggggttcg
     5641 gctgtttctg ggtgataatt tcaatctggt cgcccatctg cagctggtag gtgaacggca
     5701 caatgcgccc gccaattttt gccccgatgc agcggtgtcc gacatcactg tggatgtggt
     5761 aagcgaagtc cagcggcgtt gatcccgcag gcaaatcaac gacatcacct ttcggcgtaa
     5821 agacatacac ccggtcgtca aagacctggc tgcgtacttc gtcgagcatt tcgccggaat
     5881 cagccatctc ttcctgccac gcaatcagtt tacgcagcca ggcaatccgg tcttcatgtc
     5941 ccgaacgtgc gccgccagct gccgcgccct ctttatattt ccagtgcgca gcaacaccca
     6001 actctgcatc ttcatgcatc tgtttggtgc ggatttggat ctcaacggtt ttgccacctg
     6061 gccccagaac cacggtatga atagactgat aaccgtttgg tttcgggtta gcgacataat
     6121 cgtcaaactc atccggcagg tggcgatagt gagtgtgcac tatccccagt gcggcataac
     6181 aatcctgtaa acgctcggcg acaatacgta ccgcacgcac atcaaacagc tcatcgaagg
     6241 cgaggttctt tttctgcatt ttgcgccaga tgctgtagat gtgtttcgga cggccataca
     6301 cttcagcttt aacgccttca gctttcatct cagcgcgcag atgaccgaca aactcttcga
     6361 tatagtgttc gcggtcgaga cggcgttcat gcagcagttt tgcgatgcgt ttgtattcgg
     6421 tcgggtgcag ataacggaag cagtaatctt ccagctccca tttcagttgc ccaatcccaa
     6481 gacggttcgc caacggcgcg tagatattgg tgcactcttt tgccgccagt acgcgttcat
     6541 cttccggcgc atcttttact tcgcgcagat gagcaatacg ctccgccagt ttgatgacca
     6601 cgcagcgaaa atcatcgacc atcgccaata acatccggcg aacgttatcg acctgttcgg
     6661 aggaaacaga atcagtgtgc gtcgctttca gctggcggat cgccgccata tcacgcacgc
     6721 cgtgaataag gttaacgaca gacttaccga cgctctcacg cagcacatct tcgctgacta
     6781 cgttggcatc ggccagaggg aacagcagcg ccgcccgcag cgtgtcaatg tccatactta
     6841 atgtcgagag gatctccacc atctcaacac cacgccacaa taacagactg gcatccggat
     6901 gcccctgcgt ctgctgcaga caatacgccc aggtttcggc taagcactca cacgacttct
     6961 ggctggtaat acccagactt gcgatccatt tttccggatc aaattcacca gccttattga
     7021 tatgtgcact tcttaccgca accattgtcc tctcctttag ggaccagacc tgccgaaatc
     7081 ggcaaatcgt aactatttaa cgcgcgagaa aagtaccatc gattccagat gtcccgtgtg
     7141 tgggaacata tccagcatcg ccagtcgcgc aatggtatat cctgctttta ataacgcttc
     7201 gctatcccga gccagcgttg cagggttaca ggatacataa actatacgaa taggttccag
     7261 ttttataatt tgctgcataa cacctgcggc acctgctcgc gccgggtcca gcaacacttt
     7321 atcgaagccg tttttcgccc acggctgctt tgtgacatct tcttcaagat tttcgtgata
     7381 aaacgtcaca ttctgtaagc cattaagacg cgcattctgc tggccttttt ccaccagcgc
     7441 cggaacacct tctacaccga ccacactggc agcttgtgtc gccaatggca gtgtaaagtt
     7501 gcccataccg cagaacagat ccagtacgcg atcttcaggt tgcacatcca gccattccaa
     7561 cgcactcgct accatttttt ggttcacacc cgcattgacc tgaataaaat cgcgcgggct
     7621 aaaagttaag cgcaacccgt tagagtcata ccagggcatc tcaccagaga cggtttcgag
     7681 tatctcacta tcgggggcga gatacagatc caggccttca gaatgcgaaa agcgttccag
     7741 tttttcgcga tctgccgaac ttagcggtgc ggtatggcgc aaaatcatca gcgtgccgct
     7801 ggttgcctgt accagttcaa catgaccaag atggcgcatt gcttgtaagc tgcccaggca
     7861 tgccctgact ttgggcagca atgcttcaag ttggggcact aaaatgggac attgtttaac
     7921 gtcgacaatg tcactggagc ccgctttgcg aaaccccatc tgaagttgct gtgttttcgg
     7981 taagtagttc agacttaaac gcgcgcgacg gcgatagccc cagggaacat cggcgatcac
     8041 ttcagagact tcgtgtttca ttaatcgggc gagtgccgca cttttgcttc gctgctgtaa
     8101 atccacgctg gcgtgttgtt gctgacagcc gccgcatacg ccaaaatgag gacagcgtgg
     8161 cgtttcgcgt tccgggctat cgcttaaccg gcgtacgact ttagcgcggg catactgttt
     8221 tttatcttca gtaacagtaa cttccgcgtt ttcctgcggc aataatccgg ggataaatag
     8281 cgttttgccg ttatgtcgcg ccacgccctg accaaaagag tcgaggtcgt tgactgaaac
     8341 ggttatgatc tgacgcgtcg tcgtgcgtcg ttttgcagag tagaattgcg ccattggcga
     8401 gactttctca atttaacagt gtgaccttaa ttgtcacata acggaactcc atgaccaact
     8461 acagcctgcg cgcacgcatg atgattctga tcctggcacc gaccgtcctt attggtttat
     8521 tgctgagtat atttttcgtc gtgcatcgct ataacgactt gcagcgtcaa ctggaagatg
     8581 caggtgccag cattattgag ccgcttgcag tttctactga atatggcatg agcctgcaaa
     8641 atcgcgaatc tatcggtcag ttaataagcg tactgcatcg tcgccattcc gatattgttc
     8701 gcgcgatttc ggtttatgat gaaaataacc gactctttgt cacctccaat tttcatcttg
     8761 atccctcatc aatgcagctc ggcagcaacg tgccgtttcc tcgccagctc actgtcactc
     8821 gtgacggcga tattatgatc ctccgcacgc cgattatttc tgagagttac tcccccgacg
     8881 aatcgcccag tagcgatgcc aaaaatagtc aaaatatgtt gggatatatt gcgcttgagc
     8941 tggatcttaa atcggttcgc ttgcagcaat ataaagagat ctttatttcc agcgtgatga
     9001 tgctgttttg tatcggtatt gcgcttattt ttggctggcg cttaatgcgc gatgtaaccg
     9061 gtccgattcg caacatggtg aataccgtcg accgcatccg tcgcgggcaa ctcgacagcc
     9121 gggtggaagg atttatgctc ggcgagctgg atatgctgaa aaacggtatc aactcgatgg
     9181 caatgtcgct ggctgcttat cacgaagaga tgcagcacaa tatcgaccag gcgacgtccg
     9241 atctgcgtga aacgctggag cagatggaaa ttcagaacgt tgagttggat ctggcgaaaa
     9301 agcgcgccca ggaagcggcg cgtattaaat ccgagtttct ggcaaatatg tcacacgagc
     9361 tgcgtacacc actgaatggt gttattggct ttacccgcct gacgctgaaa acagaattaa
     9421 caccaacgca gcgcgatcac ctgaatacga ttgaacgttc ggcaaataat ttgctggcaa
     9481 ttattaatga tgttctcgac ttctcgaaac tggaagcagg taagctgatt ctggaaagta
     9541 ttccattccc actacgcagc acgctggatg aagtcgttac tctgctggca cattcttctc
     9601 acgataaagg gttggaactg acgctcaata ttaaaagcga cgtgcctgat aacgtgatcg
     9661 gcgacccact gcgattacag caaatcatca ctaacctggt ggggaatgca attaaattca
     9721 ccgagaatgg caacattgat attctggtag aaaaacgtgc gctgagtaat accaaagtgc
     9781 agattgaagt gcagattcgg gataccggca ttggtattcc tgaacgcgat caatcgcgct
     9841 tattccaggc cttccgacag gctgatgcca gtatttcccg ccgtcatggt ggcaccgggc
     9901 tggggctggt gattacacaa aaactggtta atgaaatggg cggcgatatt tcgttccata
     9961 gccagccgaa tcgcggttca actttctggt tccacattaa tctcgatctg aacccgaaca
    10021 ttattatcga agggccatcc acccagtgcc tcgcaggtaa gcgcctggcc tatgtcgaac
    10081 caaactccgc agcagcgcaa tgcacgctgg atattttaag tgaaacgccg ctggaagtgg
    10141 tttatagccc aacgttctcc gcgctgcctc ccgcgcatta cgacatgatg ttgttaggca
    10201 tcgcggtgac cttccgcgag ccgctaacaa tgcaacatga gcgattagcg aaagcggtat
    10261 cgatgaccga tttcctgatg ctggcacttc cttgccatgc acaagtcaat gctgaaaaac
    10321 tcaagcaaga tggtatcggc gcgtgtctgc tgaaaccatt aacacctaca cgcctgttgc
    10381 ctgccctgac ggaattttgt catcacaaac aaaacacgct tttgcctgta accgatgaaa
    10441 gtaagctggc aatgacagtc atggcggttg atgacaaccc cgctaacctg aaacttatcg
    10501 gcgcattgct ggaagatatg gtgcaacatg tggaactttg cgatagcggg catcaggcgg
    10561 ttgaacgggc gaaacagatg ccgttcgatt tgatcttaat ggatattcaa atgccggaca
    10621 tggatggcat tcgggcctgc gaactcatcc accagctccc ccatcagcaa caaacgccgg
    10681 ttatcgcggt aacggcgcat gcaatggccg ggcaaaaaga gaagctgctt ggcgcaggga
    10741 tgagcgatta tctggcgaaa ccgattgaag aagagcgatt gcataatttg ttgttgcgct
    10801 acaagcctgg cagcggtatt tcctctcgcg tcgtgacgcc cgaagtcaac gaaattgtgg
    10861 tgaacccgaa tgcgaccctc gactggcaac tggcactacg ccaggcagca ggaaaaaccg
    10921 atttagcgcg cgatatgctg caaatgttac tcgatttcct gcctgaagtt cgcaacaaag
    10981 ttgaggaaca gctggttgga gaaaacccgg aaggcctggt tgatttgatt cataaactgc
    11041 atggcagttg cggctatagc ggtgtgccgc gtatgaagaa tctctgccaa ctgatcgaac
    11101 aacagctacg tagcggtact aaagaagaag atttggagcc ggagctgctg gaactgttgg
    11161 acgagatgga taatgtcgcg cgcgaagcca gcaaaattct cgggtaacgg acgtcttgtc
    11221 gagtagcaat cggcttttta tgacgctggt ttcagattgg tgacaaagtg cctgtgttta
    11281 tgccggatgc ggcgttaacg ccttatccgg cctacaaaac caattaaatt caatgaatta
    11341 aaaaatgatg tagacctgat acatagcaca acaggctatt ttgcgtttag catcagtctc
    11401 aagccggctc cagatagagc cggttttggt tttctgtctt aacgcaccat gcacgggcgc
    11461 ttgttatcga acgtccagcc aggaatcaga tactgcattc ccatcgcatt gtcacgcgcg
    11521 caaagcccgt gtttctgata cagctcatgg gctttcatca cttgatccat atcgatttct
    11581 acacccagcc ccggtttttc cggcacctga accagaccgc ctttgatctc aaacggttct
    11641 ttggtcaagc gctgattgcc ttcctgccaa atccagtgcg tatcaatcgc ggtgatttta
    11701 cccggtgcag cggcggcaac atgggtaaac atcgccaggg aaatatcgaa gtggttgttt
    11761 gagtgtgaac cccaggtcag gccaaattca tggcacattt gcgccacacg taccgaacct
    11821 tgcatcgtcc agaaatgcgg atccgccagc gggatatcaa cggattgcag ggagagcgta
    11881 tggcccatct gccgccagtc ggtggcgatc atattggttg cggtcggcag gccagttgcg
    11941 cgacggaact ctgccatcac ttcacgcccg gagaaacctt gctccgcacc acacggatct
    12001 tctgcataag ccagcgaccc tttcaggtat ttaccaattt taatcgcttc gttcagcaac
    12061 caggcaccgt taggatcgag cgtaatacgc gcctgcggga agcgttgcgc cagtgccaca
    12121 atagactcgg cctcttcttc cccggccagt acaccgcctt tcagtttgaa atcgttgaag
    12181 ccatattttt catacgccgc ttccgccagg cgcaccaccg catccggcgt catcgcttct
    12241 tcatgacgca ggcgatacca gtcgcatgag tcatccggct ggctttgata cggcagcggt
    12301 gtggctttgc gatcaccgac gaagaacaga taaccgagca tttcgacttc gctacgctgt
    12361 tgaccatcgc ccagcaggga tgccacgttt acccccagat gctgccccag cagatccagc
    12421 attgccgctt ctatcccggt aactacatga atagtggtac gcaaatcaaa tgtctgcaaa
    12481 ccgcgcccac cagcatcacg atcggcaaaa gtattacgca ccagcgtcag aacgtttttg
    12541 tattcaccca gcgttttacc taccaccagc ggaatcgcat cttccagcgt tttacggatt
    12601 ttctcgccgc cgggaatttc ccctacgcca gtgtgaccag aattatcttt gataatcata
    12661 atattacgcg taaagaacgg tgcgtgtgca ccactcagat tcatcagcat actgtcatga
    12721 cccgccaccg ggatgacctg catttcagta acaacaggcg tcgtaaattg agaactcata
    12781 tttatgtcct ttttcagaat caatgacggc cgaaaacggg acgtttacgg tcaaaggtcc
    12841 agccggggat caggtactgc atcggacctg cgtcgttacg cgcaccgcca ggcagacgtt
    12901 tataggcctc atgtgccttt tgtacctgtt cccagtccag ttccacgccc agaccgggcg
    12961 catcaggaac ggcaattttt ccgtttttaa tctccagcgg atttttggtc aggcgacaat
    13021 cgccctcctg ccaaatccag tgggtatcga tagcggtagg attacccggt gccgccgcgc
    13081 ccacatgggt aaacatcgcc agagagatat cgaaatggtt attagaatgg cagccccagg
    13141 tcagccccca gtcgtcgcaa agctgcgcca cacggactgc accggaaagc gtccagaagt
    13201 gcggatcggc aagtggaata tctaccgcat tgagcatcac cgcatgaccc atttcgcgcc
    13261 agttggtggc gatcatgtta gtcgcgacgg gcaagccggt cgcccgccga aactccgcca
    13321 taacttcacg accggagaaa ccctgttctg cgccgcatgg atcttcggca taggtaagaa
    13381 catcattcag ccctttgcat agagaaatgg cttcatcaag tagccaggca ccgttgggat
    13441 caacggtaat ccgcgcatca gggaagcgtt tcttcaatgc acgaacagtg tcgatttctt
    13501 gctcgccagg taacaccccg cccttaagtt tgaaatcttt aaagccatag cgatcctgtg
    13561 aggcttccgc cagacgcaca acggcttcgc tgttcatcgc tttctgatgg cgcaactgat
    13621 accactcatg gttgcccggc gtattttcca gataaggaag atcggttttg gtccgatcac
    13681 cgatataaaa cagataaccg aggacggtaa tagtctcgcg ttgcttgcct ggccccaaca
    13741 gttcgcagac cggaacattc agcgccttac ctagcaggtc aagcaaggcg gcttccagcg
    13801 ccgccacggc attaacgtgc aattcaaaag tccaggcacc tttgccgaag gtatcaaaat
    13861 cggctgcctg attaccttta tgcacctgct gaaccacttt attcaggcgc gcaacttcct
    13921 ggcccagaac catcggaata gcatcgacca gtgtttgata aatcacctct ccgcccggcg
    13981 cttcaccaat gccggtatgc ccggcgttat cggtgagtac cacaatattg cgggtgaaat
    14041 atgcgttatg tgccccacca atattaagca acatgctatc gtgcccggcg accggaatga
    14101 ctttcatatc agtaataaca ggactggatt gtgtcgtcat cttattgccc cgcgacaggt
    14161 ttcagctcga tacgcttgat atcgcccacc agcaccaggt agctcagtac cgcgattaag
    14221 gcatgaacac caacataaat cagcgcccca ttaaaggagc cagtcgtgcc aacgatataa
    14281 ccaattgcga ttggcgtgac gatgccagaa atgttaccga acatgttgaa caggccaccg
    14341 gaaagaccgc tgatctcttt tggcgcggta tctgccatta ctgcccaacc cagcgccccg
    14401 atgcccttac cgaagaaggc cagcgccata aagccgatga tcatccactc aacgttgacg
    14461 tagttgcaga acaccatcac catcgacagc aacatgccca ttacgatcgg tgttttacgc
    14521 gcaatgttca gcgatcccgt gcggcgcatc agccagtcgg aaataatccc acccagcaca
    14581 ccgccgataa aaccgcaaac cgccggaacg gaagccacaa agcccgcttt cagaattgac
    14641 atcccacgcg cctgcaccag ataaaccgga aaccaggtaa tgaaaaagta agtcagggcg
    14701 ttgatacagt actgaccgat ataaacgccg atcatcatcc gtgacccgag cagttgtttg
    14761 atctgccccc acttcacgct gaacggcact ttaactttgg tgttttgctg atccatattg
    14821 atcagcgcgc cacccgcggc gatgtactcc agctctttct gatttacccc cggatgttga
    14881 tttggctcgt ggatgacttt caaccagata aagctgatga caatccccag accgcccata
    14941 aagaagaaga cgtgtgacca gcccacttca tgcgtcagcc agcccataat cggcgcgaag
    15001 atcaccgttg cgaagtattg agcggagtta aaaatcgaca ccgccgttcc cctttcctgc
    15061 gccggaaacc aagccgcaac aatgcgactg ttgccgggga aagatggcgc ttcagcaagc
    15121 ccgaccagga agcgcagagt aaacagggca acgataatgc cgaatccact aaagatatcg
    15181 acgaagcctt gcagcaaggt aaacatcgac cagataaaga tcgaccagaa gtagacgcgt
    15241 tttgaaccaa aacgatccag caaccaacca ccagggatct gcccgataac ataagcccat
    15301 gagaaggcag agaacacata gcccattccc acgggatcaa ggccgatatc tttggccatt
    15361 tccgaaccgg caatagaaag cgtagcgcgg tcgccgtagt tgaaggatgt gacgataaac
    15421 aacatcacca ctatccagta acgagcattc gtgcgttttt ccacactgct cgcagcctga
    15481 cttaaagaac tcgttgttgc actcctgaaa attcgcgtta gccacgctaa ctctggactg
    15541 cgacatagcc aggaaatcag aggtgacgta gggtgttttt tgccgttttt ataggtcgtt
    15601 cgccgaatac ggcgcgtgtt tatatctggc aatagcagta taaaaagcgc gccatagcgg
    15661 ctcaccgtgc aacaacacaa cattaatgcg ttcaatgagg cccgattttg gcattagccc
    15721 tggacggtgg aatccacttc acggaaatga aaacaagaac aagaaaggaa gggttaaaac
    15781 gaagaaataa agaagagtat gaaatggatc gcttgactcc aggcaaacgc cagtaaaaat
    15841 ccgcgctatg aagcagtttt tactggcatt tgcctgaaaa gattcgattc agcaccgcta
    15901 aaacgacatt taccgctcgc tgaacatatc aggacaacag cgtgccccac tgttcgaccc
    15961 acggatttga ttccgtttcc ggttccgggt tctcactggc gtcaatcaac agcatttcgc
    16021 caactcgctg agcgctctgt tcctgcaaca aggcatcgaa ctgtttgccg ccattgcaga
    16081 aatttacata actgctgtcg ccgagcgcaa tcacgccata acgcagattc ggctggaagc
    16141 ccagactatc tttgattccc tgaaagagcg gcacaatgct atcaggaagg tcgccctgcc
    16201 cggtcgtgga cgtaaccacc agaacatact tatcctgata aggcagccag tcgcttaatt
    16261 caggatcttc aaataccgtt gctttgtggc cctgtgcggt cagaattgct tctgcttctt
    16321 ccgccactaa cagcgaattt ccgtacatgg tgccgacaaa aataccaatt tccgccatac
    16381 cgttttctcc ctggattagg aacttatctc tccatcctga cccgatggcg cactgaactc
    16441 aaccctttca ttttcaggaa gcagaccgcg ccagccaaat tgtgataacg cctgcatcca
    16501 ggtgtcgtcc aggcccgcgt gaatagtcag cggctcgcca gtaaaaggat gcgtcaatga
    16561 caactgactg gcatgtagca ttaaccgctg gaggccaaaa tgctcagcac cgctgcgatt
    16621 ctggcgtaaa tcgccatgtt tgctatcgcc aataatcgga tgacgcaaat gggcaagatg
    16681 tcggcgaagc tgatgtttgc gtccggtttt cggctccagt tccaccaggc cgtagcgcgt
    16741 ggtcgggtaa cgtccggtcg ctaccggcat ttctacggtc gccagaccgc gataatgcgt
    16801 cactgctggc tgcgggcctt tatcttcgcg ggcaaattta tcagcgattt tgtccagttc
    16861 ttccaccagt ggataatcca gcaccgcttc ttccatcaac cagccgcgca caatcgcatg
    16921 gtaacgtttc tggatttggt gctgttcaaa ctgttgtgcc agcagccgtc cggcctcgct
    16981 ggataatccc atcaacaaca caccagaagt gggtcggtcc agacgatgag cagtaaaaac
    17041 atgctgtcct atctggttac gcacggtttg catgaccact actttctcgt cgcgatccag
    17101 ccagctacgg tgaaccagcc agccggaggg tttatttacc gaaaccagcc attcatcctg
    17161 atagagtatt tccagcatta gctcgcatca tccgcaaaaa gagcatccag tttttccaac
    17221 tcagccagaa taagcgcgtg ttgcggatgg tccgtcgcca gcgccatttc ataatagggt
    17281 gcaacagcaa aagcgcccgg taacggctgg ttgttattta acaaatcgtg cattcgcggg
    17341 atcagcaccc actgcaacca ctccagtggt tccatggtgt ccataaagaa cggttgggta
    17401 ctattaaatt gatgcggctg gggttcatcg tttcgccagt gctgatgttc acgcagtaac
    17461 gcttcaagcg cctgcaactg gagacgaacg cggtcatgag tggtcataaa gcaacctcaa
    17521 taagaaaaac tgccgcgaag gatagcagga ataaaaaaag ggagcactgt attcacagcg
    17581 ctcccggttc gtttcgcagc attccagcta cttttgttgc tccctgctca tccttgacaa
    17641 cttttcctct ggccttgcgg ccaatcgttc atcctgaact attgcttcct gctcacacca
    17701 ccccgatgtg atacttcatc ctgaagtgtc cttggccttc ctgaccagcc gaatcatcct
    17761 gaccggttct cattctccat cctggaggtg tcctttaacg cgtcctgcgt catcctcttc
    17821 gcttcatcca gaagcctttc cctgaaacac catcctggtg tgtcctgcag aagtgtcatc
    17881 atcctgatgt tcacttcgtt gtctgactcc ctgtcgacga agatagaatc gtctttttcg
    17941 cgaagtctta caaggcgctt acagacaatg ccttaaggaa aatttcatat gaaagttaag
    18001 aattaacaat caacattttg attttaaatg aaaataacga ttcttatctt tttaagtatt
    18061 cgcttatttc ctggcgatct cctacagagt ctgtaagaga tctctcacaa ccagatgggg
    18121 tatttggatt acagaagagg cttaagttga ttaaggaatt ccgcaagatt tgaggctaaa
    18181 tgcgtccgtt tacgtgttcc cagcgtctct ttgcacactt caccggagag attacacacc
    18241 gagatgacct ctaactcttc ttccagcgtc gcgataaata gcgtgggcgg cagttttagc
    18301 cttttctgag tcaccagatg accaatcaga ttttcctgca cccgacggaa gtcgtcttca
    18361 ctccaggttt gcagcaatgt cagtttgata tcgccaaact gcgcgtgcat atccccggca
    18421 aactgagtcg tataaaaggt atgaattgtg ggttgtatca caatatcaaa agcgcgttca
    18481 accgcgttta cattttgttc cccggtaaac ggctggggtt gccagtatac ggcatcttcg
    18541 gtagttgaaa taatgcacgg tgaaggaaca ccgtacagtt cctcacttaa cggccagctt
    18601 ttatgctctt catgccacgc atcgcagtag cgtgcagtaa aatctttcag ggcttgtgcg
    18661 gtcaaatcgt ccactaattt ctctcttcac ttaaaccaga tacacttgtc gtttagttta
    18721 tctggtttat gacggtgaaa catgtcttct tatgcaaacc atcaggcact tgcgggcctg
    18781 actcttggaa aatcaaccga ttaccgggat acctatgacg ccagcctact gcaaggcgtt
    18841 ccacgcagcc tgaatcgcga cccgctgggt ctgaaagcgg ataacctgcc ttttcacggt
    18901 acggatatct ggacgctgta tgaactttcc tggctgaatg cgaaaggttt gccgcaggtc
    18961 gctgtcggtc atgttgaact tgattacacc agcgtaaatc tgattgagtc gaagagtttt
    19021 aagctctatc tcaacagttt taaccagacg cgttttaata actgggatga ggtgcgccag
    19081 acgctggagc gcgacttaag cacttgcgct cagggtaaga ttagcgtggc gttatatcgt
    19141 cttgatgaac tggaaggcca gccgataggt cattttaatg gcacttgcat tgatgaccag
    19201 gatatcacta tcgataacta tgaattcact actgactatc tggagaatgc cacctgtggt
    19261 gaaaaagtag tggaagagac gcttgtcagc cacctgctga aatcaaactg cctgatcacc
    19321 catcaaccag attggggttc gatccaaatt cagtatcgtg gacgccaaat tgacagagaa
    19381 aaactgctgc gttacctggt ctcattccgt catcacaacg agttccacga acagtgcgtg
    19441 gaacgcatct ttaatgacct gttacgcttc tgccagccag aaaaattgag cgtttacgca
    19501 cgttataccc gtcgtggcgg tctggacatt aacccgtggc gcagtaatag cgattttgtc
    19561 ccatcgacca caagactggt tcggcaataa attttttctc aattttgcgt gctggattca
    19621 cgcagaaggt tgtgaaaggt catcaggcag ggctattgta atcaaaggga atgacgatat
    19681 tcgtcccata aggagttttt cttgattaca catattagcc cgcttggctc catggatatg
    19741 ttgtcgcagc tggaagtgga tatgcttaaa cgcaccgcca gcagcgacct ctatcaactg
    19801 tttcgcaact gttcacttgc cgtactgaac tccggtagtt tgaccgataa cagcaaagaa
    19861 ttgctgtctc gttttgaaaa tttcgatatt aacgtcttgc gccgtgaacg cggcgtaaag
    19921 ctggaactga ttaatccccc ggaagaggct tttgtcgatg ggcgaattat tcgcgctttg
    19981 caggccaact tgttcgcggt cctgcgtgac attctcttcg tttacgggca aatccataac
    20041 accgttcgtt ttcccaacct gaatctcgac aactccgtcc acatcactaa cctggtcttt
    20101 tccatcttgc gtaacgctcg cgcgctgcat gtgggtgaag cgccaaatat ggtggtctgc
    20161 tggggcggtc actcaattaa cgaaaacgag tatttgtatg cccgtcgcgt cggaaaccag
    20221 ctgggcctgc gtgagctgaa tatctgcacc ggctgtggtc cgggagcgat ggaagcgccg
    20281 atgaaaggtg ctgcggtcgg acacgcgcag cagcgttaca aagacagtcg ttttattggt
    20341 atgacagagc cgtcgattat cgccgctgaa ccgcctaacc cgctggtcaa cgaattgatc
    20401 atcatgccag atatcgaaaa acgtctggaa gcgtttgtcc gtatcgctca cggtatcatt
    20461 atcttccctg gcggtgtggg tacggcagaa gagttgctgt atttgctggg aattttaatg
    20521 aacccggcca acaaagatca ggttttacca ttgatcctca ccggcccgaa agagagcgcc
    20581 gactacttcc gcgtactgga cgagtttgtc gtgcatacgc tgggtgaaaa cgcgcgccgc
    20641 cattaccgca tcatcattga tgacgccgct gaagtcgctc gtcagatgaa aaaatcgatg
    20701 ccgctggtga aagaaaatcg ccgcgacaca ggcgatgcct acagctttaa ctggtcaatg
    20761 cgcattgcgc cagatttgca aatgccgttt gagccgtctc acgagaatat ggctaatctg
    20821 aagctttacc cggatcaacc cgttgaagtg ctagctgccg acctgcgccg tgcgttctcc
    20881 ggtattgtgg cgggtaacgt aaaagaagtc ggtattcgcg ccattgaaga gtttggtcct
    20941 tacaaaatca acggcgataa agagattatg cgtcgtatgg acgacctgct acagggtttt
    21001 gttgcccagc atcgtatgaa gttgccaggc tcagcctaca tcccttgcta cgaaatctgc
    21061 acgtaatctc ccctcccccg gtgacgtttg ttgccgggtt ttctcgtttt tggtcactta
    21121 ctcatcaact catttcattt gttatatgaa tgtttcttac caccctcacg cgacaaatat
    21181 catcacagtt aatatgtcat acaatttatg ttgcaacgca aacgtttccc tattttcata
    21241 aaccgtattt tatcgctatg aaaaagaaat tatcgccatg attaactaaa agtattgatt
    21301 ttttcagttc aacctacata tattgcgcgc cctggaagaa gtcagatgtc gtttaatggg
    21361 caaatattgc ccttaaattc tcttttactt ttgatttaca gagtaaagcg ttgggataat
    21421 ctatcttcca agtagattat tgtatttgag atcaagatca ctgatagata cataacttgt
    21481 gtgtatcttt ccgccctcaa attattacgg cggtaaatga ttaagccatc gccgatagac
    21541 agatttcatt tttacggtca ggcaccttcc cgggctgaac tggctaaaag ctgaattatt
    21601 tgcattcctc caggagaaat agatggaaac gactcaaacc agcacgattg cgtcgaaaga
    21661 ctctcgtagt gcctggcgca agacagacac catgtggatg ctgggccttt acggcacggc
    21721 aatcggcgcg ggcgtgctgt tcctgccaat caacgccggt gttggcggta tgatcccgct
    21781 gatcatcatg gctatccttg cgttcccgat gacgtttttt gctcaccgcg gcctgactcg
    21841 cttcgtactg tctggtaaaa acccgggcga agacatcacc gaggttgtag aagaacactt
    21901 tggtattggc gcaggtaaac tgattaccct gctctacttc ttcgctatct acccgatcct
    21961 gctggtttat agcgtggcaa tcaccaatac agttgaaagc ttcatgtctc accagctggg
    22021 tatgacgcca ccgccgcgtg cgattctgtc gctgatcctg atcgtgggta tgatgaccat
    22081 cgttcgcttc ggtgagcaga tgatcgttaa agcgatgagt attctggtgt tcccgtttgt
    22141 tggcgtattg atgctgctgg ctctgtacct gatcccgcag tggaacggcg cagcactgga
    22201 aacgctgtct ctggacactg catctgcaac cggaaacggt ctgtggatga ccctgtggct
    22261 ggcaattccg gtaatggtgt tctcgttcaa ccactctccg atcatctctt ctttcgccgt
    22321 tgcgaagcgt gaagagtacg gcgatatggc agaacagaaa tgctcgaaga tcctggcatt
    22381 cgcacacatc atgatggtgc tgaccgtaat gttcttcgtc ttcagctgtg tactgagcct
    22441 gactccggca gacctggctg cggctaaaga gcagaacatc tcgattctgt cttacctggc
    22501 taaccacttt aacgcaccgg ttatcgcgtg gatggctccg attatcgcga ttatcgctat
    22561 caccaaatcc ttcctcggcc actacctggg cgcacgtgaa ggcttcaacg gtatggtgat
    22621 taaatctctg cgtggtaaag gtaagtctat cgaaatcaac aagctgaacc gtatcactgc
    22681 gctgttcatg ctggtaacga cctggattgt tgccaccctg aacccgagca tcctgggtat
    22741 gattgaaacc ctgggcggtc caatcatcgc gatgatcctg ttcctgatgc cgatgtacgc
    22801 aattcagaaa gtaccggcaa tgcgtaagta cagcggtcac atcagcaacg tattcgttgt
    22861 cgtgatgggt ctgattgcaa tctccgcaat cttctactct ctgttcagct aagtcctttc
    22921 gcgccgcttt cgggcggcgc ttcctccgtt ttaacgcgat gtatttccta tgattagcgt
    22981 attcgatatt ttcaaaatcg gcattggccc ttccagttct cataccgttg gaccaatgaa
    23041 agcgggtaaa caatttaccg acgatctgat tgcccgtaac ctgcttaaag acgtgacccg
    23101 cgtggtggtt gacgtgtacg gctcgctctc tctgaccggt aaaggccacc acactgatat
    23161 cgccattatt atgggcctgg cgggtaacct gccggatacc gtggatatcg attccatccc
    23221 tggttttatt caggatgtga atactcatgg tcgcctgatg ctggcaaacg gtcagcatga
    23281 agtggagttc ccggttgatc agtgcatgaa cttccacgcc gacaaccttt ctctgcatga
    23341 aaacggtatg cgcattaccg cgctggcggg cgataaagtc gtttacagcc agacttacta
    23401 ctctattggc ggtggcttta tcgttgatga agagcatttt ggccagcagg atagcgcacc
    23461 ggttgaagtt ccttatccgt acagttcagc agccgatctg caaaaacatt gtcaggaaac
    23521 cgggctgtca ctctctggcc tgatgatgaa aaacgagcta gcgctgcaca gcaaagaaga
    23581 gctggaacag cacctggcga acgtatggga agtcatgcgt ggcggtattg agcgcggtat
    23641 ttccaccgaa ggcgtgttgc ctggcaaact gcgcgttcca cgccgtgctg cggcactacg
    23701 ccggatgctg gtcagccagg ataaaaccac cactgacccg atggcggttg ttgactggat
    23761 caacatgttt gcactggcag tgaacgaaga gaacgctgct ggcggacgcg tggtgactgc
    23821 gccgactaac ggtgcgtgcg ggattatccc ggcagtgctg gcgtactacg acaagtttat
    23881 ccgcgaagtg aacgctaact cactggctcg ttacctgctg gtagccagtg ccattggttc
    23941 tctttataag atgaacgcgt caatttctgg tgctgaagtc ggctgccagg gtgaagttgg
    24001 tgtggcgtgc tcaatggcgg cggctggtct ggcagaactg ttaggtgcaa gcccggcgca
    24061 ggtgtgcatc gcggcggaaa tcgccatgga gcacaacctc ggtctgacgt gtgacccggt
    24121 cgccggacag gtccaggtgc catgcatcga gcgtaacgcc attgcggcag taaaagcggt
    24181 gaacgccgca cgtatggcgc tacgccgtac cagcgagccg cgcgtctgcc tcgataaagt
    24241 tatcgaaacc atgtacgaaa caggtaaaga tatgaacgcc aagtaccgcg aaacctctcg
    24301 cggcggcctg gcaatgaaga tcgttgcctg cgattaatcg ctctccagag gcctcgtttt
    24361 gcgaggcctc ttcccgattt ctcatccagc cgtagcctgt tccggcatcg aatgttaccc
    24421 ttatcgcctg atctttaagg gggttatcgt ggctgttcat ttgcttattg tcgatgcact
    24481 gaatcttatt cgtcgcattc atgccgttca gggatcgccc tgtgtcgaaa cctgccagca
    24541 tgcgctcgat cagctcatta tgcacagcca gccaacccac gcggtcgccg tttttgatga
    24601 tgaaaaccgc agtagcggct ggcgtcatca gcgtttacca gattacaaag cgggtcgacc
    24661 gccaatgccg gaagagttgc acgacgagat gcctgcatta cgcgccgcct ttgagcaacg
    24721 cggcgtcccg tgctggtcaa ccagcggcaa cgaagccgat gacttagccg ccacgctggc
    24781 ggtcaaagtg acacaggccg ggcatcaggc aacgattgtt tcgacagata aaggctactg
    24841 tcagttactt tcaccgacat tacgtattcg tgattacttc cagaaacgtt ggctggatgc
    24901 gccatttatc gataaagaat ttggcgttca accgcagcag ttgcccgatt actggggact
    24961 tgcggggatc agcagttcaa aggtaccggg tgttgcggga atcggaccaa aaagcgccac
    25021 gcagctgctg gtcgagtttc agagtctgga agggatatat gagaatctgg atgcggttgc
    25081 cgaaaagtgg cgcaaaaaat tagaaaccca taaagagatg gcgtttctgt gccgcgatat
    25141 tgcccgctta caaaccgatt tgcatatcga cggcaattta cagcaattgc ggttggtacg
    25201 gtaacggcga gccggatgca aacgattatc aacacattga atttaatgca cttatatacc
    25261 ggataagacg cggctagcgt cgtatccggc attatcacat cagcgcattt accaggcggt
    25321 atggtaaagc tctacaatat cctcaagcgt tgcttcacgc gggttgccac cggtacaaac
    25381 atcatccagt gccgcctgcg ccagtgccgg aatgtcttcc ttgcgtacac caacatcacg
    25441 caaatgtggc ggaataccga catcacggtt gagagcaaac accgcttcaa cagcggcatt
    25501 acgcgcctct tccagccact ttcacgccca taacgcgcgc gatatcgcgg tacttctcac
    25561 cggtaaagtc agcgttatag cgcatgacat gcggtaacag gatggcgttc gcaacaccgt
    25621 gtggagtgtt gtaaaacgcg cccagtggat gcgccatacc atgcaccaac cctaacccaa
    25681 cattcgagaa gcccataccc gcaacatact gcccgagcgc catttcttct ccggcatcct
    25741 tatcaccagc aaccgatcct cgcagcgccc cagcaatgat ttcaatcgct ttaatgtgca
    25801 gtgcatcggt tagcgcccac gcgccacggg taatataccc ctcaatagca tgagtgagcg
    25861 catcgacacc cgtcgcagct ttcagcgctg gaggcatacc atccatcatg tcagcgtcaa
    25921 taaacgccac ctgcgggata tcatgcggat caacgcaaac aaacttgcgc cgtttctctt
    25981 cgtcagtgat cacgtagtta atggtcactt ctgccgcagt acctgctgtg gtaggaattg
    26041 ccagaatcgg tacactgggt ttattggtcg gggaaagccc ttccaggcta cgcacatcgg
    26101 caaactccgg gttgttgctg ataatgccaa tcgctttaca agtatcctgt ggagaaccac
    26161 caccaatagc gatcaggtaa tccgcgccgc tattctggaa tacaccgagc ccttctttga
    26221 cgacagtaat tgttgggttg ggcactacgc cgtcgtaaat cgcccatgcc agccctgcag
    26281 catccatctt atcggtcact ttcgccacca cgccgcattg caccagcgtt ttatcggtga
    26341 cgatcagcgc cttctgataa ccacggcgtt tcacctcatc ggttaaagcc ccaacagcac
    26401 cccgaccaaa ccatgccgtt tcgttcagaa tcattctgtt agccatcatc cttctccttg
    26461 ttgctttacg aaattactct tcaatccgta acccataggt tttgaatttc tccagcacta
    26521 cggcaatctc ttcatcgctc agcactggca ccgggtccgt aatcgccagg gtcgtcaggt
    26581 aaagttgcgc cagcacttca acttcatgcg ccagccataa cgctttttcc agattcacct
    26641 cacaagcgat aagcccatga tgttgtaaca aagttgcctt acgatttttg agagccagcg
    26701 caacatgttc agaaagttcg cgtgttccaa aggtcgcata aggcgcgcaa ggaatagaat
    26761 taccacctgc cgccgcaatc atgtagtgaa tagcggggat cggtcggtta agaatggaaa
    26821 ctgctgtgca atgaacggca tgattgtgaa caaccgcgtt ggcatccggt ctgctttgat
    26881 aggccgccat atggaaacgc cattcgcttg aggggagctt tccttcctca tgtttaccgt
    26941 taccatcaat aaaggcaata tgcgactccg tcagtttttc atatggaatg cctgtaggcg
    27001 taatcagcat cccatcctga taacgtacac tgacgttccc cgctgtcccc tggttcagtc
    27061 ccaggcgggt catttccagg caagtgtcaa taatctgacg agcaagttta tttcgttcca
    27121 ttagctacct ctctctgatt caaaacaggg caataatgtt gttcctttca cactattgaa
    27181 ttagccgttt aattacccac cat
//
LOCUS       DADMJB010000040        26780 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.040, whole genome shotgun sequence.
ACCESSION   DADMJB010000040 DADMJB010000000
VERSION     DADMJB010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 26780)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26780)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26780
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.040"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..326)
                     /locus_tag="JN078_001521"
     CDS             complement(<1..326)
                     /locus_tag="JN078_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /protein_id="HAY9040767.1"
                     /translation="MTISTTSTPHDAVFKSFLRHPDTARDFIDIHLPAPLRKLCDLTT
                     LKLEPNSFIDEDLRQYYSDLLWSVKTQEGVGYIYVVIEHQSKPEELMAFRMMRYSIAA
                     MQNHLDA"
     gene            complement(523..1296)
                     /gene="hisP"
                     /locus_tag="JN078_001522"
     CDS             complement(523..1296)
                     /gene="hisP"
                     /locus_tag="JN078_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter ATP-binding protein
                     HisP"
                     /protein_id="HAY9040768.1"
                     /translation="MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGK
                     STFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN
                     LWSHMTVLENVMEAPIQVLGLSKQEAHERAVKYLAKVGIDERAQGKYPVHLSGGQQQR
                     VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV
                     STHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQFLKGSLK"
     gene            complement(1304..2020)
                     /locus_tag="JN078_001523"
     CDS             complement(1304..2020)
                     /locus_tag="JN078_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAY9040769.1"
                     /translation="MIEILHEYWKPLLWTDGYRFTGVAITLWLLILSVVIGGVLALFL
                     AIGRVSSNKYIQFPIWLFTYIFRGTPLYVQLLVFYSGIYTLEIVKGTEFLNAFFRSGL
                     NCTVLALTLNTCAYTTEIFAGAIRSVLHGEIEAARAYGFSTFKMYRCIILPSALRIAL
                     PAYSNEVILMLHSTALAFTATVPDLLKIARDINAATYQPFTAFGIAAVLYLIISYVLI
                     SLFRRAEKRWLQHVKPSSTH"
     gene            complement(2017..2703)
                     /locus_tag="JN078_001524"
     CDS             complement(2017..2703)
                     /locus_tag="JN078_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311219.1"
                     /note="The N-terminal region of this protein, as described
                     by TIGR01726, is a three transmembrane segment that
                     identifies a subfamily of ABC transporter permease
                     subunits, which specificities that include histidine,
                     arginine, glutamine, glutamate, L-cystine (sic), the
                     opines (in Agrobacterium) octopine and nopaline, etc;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HAY9040770.1"
                     /translation="MLYGFSGVILQGALVTLELAISSVVLAVIIGLIGAGGKLSQNRL
                     SGLIFEGYTTLIRGVPDLVLMLLIFFGLQIALNTVTEAMGVGQIDIDPMVAGIITLGF
                     IYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQV
                     ILKSTALVSLLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTTVSNGVLLFLERR
                     YSVGVKRADL"
     gene            complement(2793..3575)
                     /gene="hisJ"
                     /locus_tag="JN078_001525"
     CDS             complement(2793..3575)
                     /gene="hisJ"
                     /locus_tag="JN078_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter substrate-binding
                     protein HisJ"
                     /protein_id="HAY9040771.1"
                     /translation="MKKLVLSLSLVLAFSSATAAFAAIPQNIRIGTDPTYAPFESKNS
                     QGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQE
                     IAFTDKLYAADSRLVVAKNSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIV
                     SYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTG
                     MGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGG"
     gene            complement(3796..4578)
                     /gene="argT"
                     /locus_tag="JN078_001526"
     CDS             complement(3796..4578)
                     /gene="argT"
                     /locus_tag="JN078_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine/arginine/ornithine ABC transporter
                     substrate-binding protein ArgT"
                     /protein_id="HAY9040772.1"
                     /translation="MKKSILALSLLVGLSAAASSYAALPETVRIGTDTTYAPFSSKDA
                     KGDFVGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQE
                     IAFSDKLYAADSRLIAAKGSPIQPTLDSLKGKHVGVLQGSTQEAYANETWRSKGVDVV
                     AYANQDLVYSDLAAGRLDAALQDEVAASEGFLKQPAGKDFAFAGSSVKDKKYFGDGTG
                     VGLRKDDAELTAAFNKALGELRQDGTYDKMAKKYFDFNVYGD"
     gene            complement(4844..5413)
                     /locus_tag="JN078_001527"
     CDS             complement(4844..5413)
                     /locus_tag="JN078_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HAY9040773.1"
                     /translation="MKRLIVGISGASGAIYGVRLLQVLRDVTDIETHLVMSQAARQTL
                     SLETDFSLREVQALADVTHDARDISASISSGSFQTLGMVILPCSIKTLSGIVHSYTDG
                     LLTRAADVVLKERRPLVLCVRETPLHLGHLRLMTQAAEIGAVIMPPVPAFYHRPQSLD
                     DVINQTVNRVLDQFAITLPEDLFARWQGA"
     gene            complement(5508..7025)
                     /gene="purF"
                     /locus_tag="JN078_001528"
     CDS             complement(5508..7025)
                     /gene="purF"
                     /locus_tag="JN078_001528"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006820991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HAY9040774.1"
                     /translation="MCGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFR
                     LRKANGLVSDVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHN
                     GNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAAT
                     NRLIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLG
                     FDFLRDVAPGEAIYITEEGQLFTRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSAR
                     VNMGTKLGEKIAREWEDLDIDVVIPIPETSCDIALEIARILGKPYRQGFVKNRYVGRT
                     FIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVY
                     LASAAPEIRFPNVYGIDMPSATELIAHGREVDEIRQIIGADGLIFQDLNDLIDAVRAE
                     NPDIQQFECSVFNGVYVTKDVDQDYLDFLDTLRNDDAKAVQRQNEVENLEMHNEG"
     gene            complement(7062..7550)
                     /gene="cvpA"
                     /locus_tag="JN078_001529"
     CDS             complement(7062..7550)
                     /gene="cvpA"
                     /locus_tag="JN078_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin V production protein"
                     /protein_id="HAY9040775.1"
                     /translation="MVWIDYAIIAVIAFSSLVSLIRGFVREALSLVTWGCAFFVASHY
                     YTYLSVWFTGFEDELVRNGIAIAVLFIATLIVGAIVNFVIGQLVEKTGLSGTDRVLGV
                     CFGALRGVLIVAAILFFLDSFTGVSKSEDWSKSQLIPQFSFIIRWFFDYLQSSSSFLP
                     RA"
     gene            complement(7809..8471)
                     /gene="dedD"
                     /locus_tag="JN078_001530"
     CDS             complement(7809..8471)
                     /gene="dedD"
                     /locus_tag="JN078_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416817.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein DedD"
                     /protein_id="HAY9040776.1"
                     /translation="MASKFQNRLVGTIVLVALGVIVLPGLLDGQKKHYQDEFAAIPLV
                     PKAGDRDEPDMMPAATQALPTQPPEGAAEEVRAGDAAAPSLDPATIAANNTEFEPEPA
                     PVAPPKPKPVEPPKPKVEAPPAPKPEPKPVVEEKAAPTGKAYVVQLGALKNADKVNEI
                     VGKLRGAGYRVYTSPSTPVQGKITRILVGPDASKDKLKGSLGELKQLSGLSGVVMGYT
                     PN"
     gene            complement(8461..9729)
                     /gene="folC"
                     /locus_tag="JN078_001531"
     CDS             complement(8461..9729)
                     /gene="folC"
                     /locus_tag="JN078_001531"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HAY9040777.1"
                     /translation="MIIKRTPQAASPLASWLSYLENLHSKTIDLGLERVSQVAARLGV
                     LKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPE
                     SAHTASFAEIESARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVD
                     ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRSAKPAIVGEPEMPSTIADVAQEKGA
                     LLQRRGVEWNYSVTDHDWAFSDAHGTLENLPLPLVPQPNAATALAALRASGLEVSENA
                     IRDGIASAILPGRFQIVSESPRVIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLH
                     DKDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADA
                     KAEDTVLVCGSFHTVAHVMEVIDARRSGGK"
     gene            complement(9799..10713)
                     /gene="accD"
                     /locus_tag="JN078_001532"
     CDS             complement(9799..10713)
                     /gene="accD"
                     /locus_tag="JN078_001532"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HAY9040778.1"
                     /translation="MSWIERIKSNITPTRKASIPEGVWTKCDSCGQVLYRAELERNLE
                     VCPKCDHHMRMTARNRLHSLLDEGSLVEMGSELEPKDVLKFRDSKKYKDRLASAQKET
                     GEKDALVVMKGTLYGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFS
                     ASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNI
                     AEPKALIGFAGPRVIEQTVREKLPLGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAK
                     LMNLPAPNPEAPREGVVVPPVPDQEPEA"
     gene            complement(10869..11528)
                     /locus_tag="JN078_001533"
     CDS             complement(10869..11528)
                     /locus_tag="JN078_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HAY9040779.1"
                     /translation="MDLIYFLIDFILHIDVHLAELVAEYGVWVYAILFLILFCETGLV
                     VTPFLPGDSLLFVAGALASLETNDLNVHMMVVLMLIAAIVGDAVNYTIGRLFGDKLFS
                     NPDSKIFRCSYLDKTHQFYERHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYN
                     VIGALLWVLIFTYAGYFFGMLPFIQSNLKLMIVGIIFVSILPGVFEFIRHKRAAARAA
                     K"
     gene            complement(11611..12423)
                     /gene="truA"
                     /locus_tag="JN078_001534"
     CDS             complement(11611..12423)
                     /gene="truA"
                     /locus_tag="JN078_001534"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HAY9040780.1"
                     /translation="MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALS
                     QVANEPITVFCAGRTDAGVHGTGQVVHFETTAPRKDAAWTLGVNANLPDDIAVRWVKA
                     VPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGEND
                     FTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHN
                     QPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKPPMGPLFLAD"
     gene            complement(12423..13436)
                     /locus_tag="JN078_001535"
     CDS             complement(12423..13436)
                     /locus_tag="JN078_001535"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HAY9040781.1"
                     /translation="MSEGWNIAVLGATGAVGEALLETLAERQFPVGEIYALARNESAG
                     EQLRFGGKTITVQDAAEFDWTQAQLAFFVAGKEATAAWVEEATNSGCLVIDSSGLFAL
                     EPDVPLVVPEVNPFVLTDYRNRNVIAVPDSLTSQLLAALKPLIDQGGLSRISVTSLIS
                     ASAQGKKAVDALAGQSAKLLNGIPIDEEDFFGRQLAFNMLPLLPDSEGSVREERRIVD
                     EVRKILQDEGLMISASVVQAPVFYGHAQMVNFEALRPLAAEEARDAFAQGEDIVLSEE
                     NEFPTQVGDASGTPHLSVGCVRNDYGMPEQVQFWSVADNVRFGGALMAVKIAEKLVQE
                     YLY"
     gene            complement(13502..14638)
                     /gene="pdxB"
                     /locus_tag="JN078_001536"
     CDS             complement(13502..14638)
                     /gene="pdxB"
                     /locus_tag="JN078_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-phosphoerythronate dehydrogenase PdxB"
                     /protein_id="HAY9040782.1"
                     /translation="MKILVDENMPYARDLFSRLGEVTAVPGRPIAVAQLADADALMVR
                     SVTKVNESLLAGKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSS
                     LLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRS
                     LDELVQHADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALL
                     TCLNEGQKLSVVLDVWEGEPELNVELLTKVDIGTPHIAGYTLEGKARGTTQVFEAYSK
                     FIGHEQHVALDTLLPAPEFGRITLHGPLDQPTLKRLVHLVYDVRRDDAPLRKVAGIPG
                     EFDKLRKNYLERREWSSLYVICDDASAASLLCKLGFNAVHHPAR"
     gene            14737..15732
                     /locus_tag="JN078_001537"
     CDS             14737..15732
                     /locus_tag="JN078_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulator Flk"
                     /protein_id="HAY9040783.1"
                     /translation="MIQPISGPPPGQPPGQGDNLPSGAGNQPLSSQQRTSLESLMTKV
                     TSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQ
                     LGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREAT
                     DRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWL
                     QARQTLSQQNTPTLESLQMALKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDIL
                     NQLYQRRVKGIDPRDMQPLLNPFPPMMDTLQNMATRPALWILLVAIILMLVWLVR"
     gene            complement(15729..16907)
                     /locus_tag="JN078_001538"
     CDS             complement(15729..16907)
                     /locus_tag="JN078_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9040784.1"
                     /translation="MTAVSQTETRSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHH
                     DLGYGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGGALLLAA
                     ILPVSAPLKFALLVVGRLILGFGESQLLTGALTWGLGIVGAKHSGKVMSWNGMAIYGA
                     LAVGAPLGLLIHSHYGFAALAITTMVLPLLAWACNGTVRKVPALAGERPSLWSVVGLI
                     WKPGLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVVMRVMFGWMPDRF
                     GGVKVAIVSLLVETVGLLLLWQAPGAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQ
                     VRGTALGGYAAFQDIALGVSGPLAGMLATTFGYSSVFLAGAISAVLGIIVTILSFRRG
                     "
     gene            complement(17236..18456)
                     /gene="fabB"
                     /locus_tag="JN078_001539"
     CDS             complement(17236..18456)
                     /gene="fabB"
                     /locus_tag="JN078_001539"
                     /EC_number="2.3.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase I"
                     /protein_id="HAY9040785.1"
                     /translation="MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGM
                     RSHVWGNVKLDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLI
                     AGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSIS
                     SACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKA
                     SRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG
                     AVRCMKMAMHGVDTPIDYLNSHGTSTPVGDVKELAAIREVFGDKSPAISATKAMTGHS
                     LGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGF
                     GGTNATLVMRKLKD"
     gene            18615..20621
                     /gene="mnmC"
                     /locus_tag="JN078_001540"
     CDS             18615..20621
                     /gene="mnmC"
                     /locus_tag="JN078_001540"
                     /EC_number="1.5.-.-"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HAY9040786.1"
                     /translation="MKHYSIQPANLEFNAEGTPVSRDFDDVYFSNDNGLEETRYVFLG
                     GNQLEVRFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK
                     FPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINEL
                     TSQQDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAGFVRR
                     GLQDAGFTMQKRKGFGRKREMLCGVMEQTLPLPCSAPWFNRTGSSKREAAIIGGGIAC
                     ALLSLALLRRGWQVTLYCADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFAR
                     RFYDQLPVKFDHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEANAVEQITGVA
                     TNCSGITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNLSRKDDCWLLNFAGDQ
                     QATHSVVVLANGHQISRFSQTSTLPVYSVAGQVSHIPTTPELAELKQVLCYDGYLTPQ
                     NPANQHHCIGASYHRGSEDTAYSEDDQQQNRQRLIDCFPQAQWAKEVDVSDKEARCGV
                     RCATRDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPVFDDLFMFAALGSRGLCSAP
                     LCAEILAAQMSDEPIPMDASTLAALNPNRLWVRKLLKGKAVKAG"
     gene            complement(20742..21020)
                     /locus_tag="JN078_001541"
     CDS             complement(20742..21020)
                     /locus_tag="JN078_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcL family protein"
                     /protein_id="HAY9040787.1"
                     /translation="MIAEFESRILALIDGMIDHASDDELFASGYLRGHLTLAIAELES
                     GDDHSAQAVHTTVSQSLEKAIGAGELSPRDQALVTDMWENLFQQASQQ"
     gene            complement(21054..21602)
                     /locus_tag="JN078_001542"
     CDS             complement(21054..21602)
                     /locus_tag="JN078_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P hydroxylase"
                     /protein_id="HAY9040788.1"
                     /translation="MNSTHHYEQLIEIFNSCFADEFNTRLIKGDDEPIYLPADAEVPY
                     NRIVFAHGFYASAIHEISHWCIAGKARRELVDFGYWYCPDGRDAQTQSQFEDVEVKPQ
                     ALDWLFCVAAGYPFNVSCDNLEGDFEPDRVVFQRRVHAQVMDYLTNGIPERPARFIKA
                     LQNYYHTPELTAEQFPWPEALN"
     gene            complement(21602..22411)
                     /locus_tag="JN078_001543"
     CDS             complement(21602..22411)
                     /locus_tag="JN078_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HAY9040789.1"
                     /translation="METFNSLFMVSPLLLGVLFFVAMLAGFIDSIAGGGGLLTIPALM
                     AAGMSPANALATNKLQACGGSISATIYFIRRKVVSLSDQKLNIAMTFAGSMSGALLVQ
                     YVQADVLRQILPILVICIGLYFLLMPKLGEEDRQRRMYGLPFALIAGGCVGFYDGFFG
                     PAAGSFYALAFVTLCGFNLAKATAHAKLLNATSNIGGLLLFILGGKVIWATGFVMLVG
                     QFLGARMGSRLVLSKGQKLIRPMIVIVSAVMSAKLLYDSHGQEILHWLGMN"
     gene            complement(22411..23235)
                     /gene="mepA"
                     /locus_tag="JN078_001544"
     CDS             complement(22411..23235)
                     /gene="mepA"
                     /locus_tag="JN078_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-insensitive murein endopeptidase"
                     /protein_id="HAY9040790.1"
                     /translation="MNKTAIALLALLASSASLAATPWQKITQPVPGSAQSIGSFSNGC
                     IVGADTLPIQSEHYQVMRTDQRRYFGHPDLVMFIQRLSSQVSNLGMGTVLIGDMGMPA
                     GGRFNGGHASHQTGLDVDIFLQLPKTRWTSAQLLRPQALDLVSRDGKHVVSTLWKPEI
                     FSLIKLAAQDKDVTRIFVNPAIKQQLCLDAGTDRDWLRKVRPWFQHRAHMHVRLRCPA
                     DSLECEDQPLPPPGDGCGAELQSWFAPPKPGTTKPEKKTPPPLPPSCQALLDEHVI"
     gene            complement(23239..24324)
                     /gene="aroC"
                     /locus_tag="JN078_001545"
     CDS             complement(23239..24324)
                     /gene="aroC"
                     /locus_tag="JN078_001545"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HAY9040791.1"
                     /translation="MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGILLTEADLQHD
                     LDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVF
                     RPGHADYTYEQKYGLRDYRGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQM
                     GDIPLEIKDWSLVEQNPFFCPDPDKIDALDELMRALKKEGDSIGAKVTVVASGVPAGL
                     GEPVFDRLDADIAHALMSINAVKGVEIGDGFDVVALRGSQNRDEITKDGFQSNHAGGI
                     LGGISSGQQIIAHMALKPTSSITVPGRTINRFGEEVEMITKGRHDPCVGIRAVPIAEA
                     MLAIVLMDHLLRQRAQNADVKTDIPRW"
     gene            complement(24359..25291)
                     /gene="prmB"
                     /locus_tag="JN078_001546"
     CDS             complement(24359..25291)
                     /gene="prmB"
                     /locus_tag="JN078_001546"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HAY9040792.1"
                     /translation="MDKIFVDEAVNELQTIQDMLRWSVSRFSAANIWYGHGTDNPWDE
                     AVQLVLPSLYLPLDIPEDMRTARLTSSEKHRIVERVIRRVNERIPVAYLTNKAWFCGH
                     EFYVDERVLVPRSPIGELINNKFAGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVD
                     AVDISPDALAVAEQNIEEHGLIHNVIPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSD
                     LPNEYRHEPELGLASGTDGLKLTRRILGNAADYLADDGVLICEVGNSMVHLMEQYPDV
                     PFTWLEFDNGGDGVFMLTKEQLLAAREYFAIYKD"
     gene            25457..26008
                     /gene="smrB"
                     /locus_tag="JN078_001547"
     CDS             25457..26008
                     /gene="smrB"
                     /locus_tag="JN078_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease SmrB"
                     /protein_id="HAY9040793.1"
                     /translation="MKKKTTLSEEDQALFRQLMAGTRKIKQDTIVHRPQRKKISEVPV
                     KRLIQEQADASHYFSDEFQPLLNTEGPVKYVRPDVSHFEAKKLRRGDYSPELFLDLHG
                     LTQLQAKQELGALIAACRREHVFCACVMHGHGKHILKQQTPLWLAQHPHVMAFHQAPK
                     EYGGDAALLVLIEVEEWLPPELP"
     gene            complement(26046..26759)
                     /locus_tag="JN078_001548"
     CDS             complement(26046..26759)
                     /locus_tag="JN078_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005007603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2544 domain-containing protein"
                     /protein_id="HAY9040794.1"
                     /translation="MATPDSVNYAIFKATFMPNSQPDLVSWTGDSSTQPSMSKISDSR
                     VSMSACPGLEQYDSQTKTGWTCNELKMFVYYDGNLHGCPWIVSSFVKSRDPFAKTYDD
                     DFPDYIGPTKVSSSCPAVPLAPYDVSWNENYVVHNKVVRLQSTGGVIEQTLPTFLMEN
                     GKLCNGNNFDERGVYCRFIAQQMTFSTSGCDNAKVTVTPEPQPITSRQLHDMKLRVDT
                     TSRQPIDSTCRFTYILNMY"
BASE COUNT         6601 a         7327 c         6748 g         6104 t
ORIGIN      
        1 gcatcaagat ggttttgcat tgccgcaatg gaataacgca tcatgcgaaa agccattaat
       61 tcttccggct tactttggtg ctctatcact acataaatat aacccactcc ctcctgcgtt
      121 ttcacagacc acaagaggtc ggaataatat tgccgcaggt cttcatcaat aaaactgttt
      181 ggttccagtt taagcgtcgt taaatcacac agtttgcgca gcggcgcggg aagatgaata
      241 tcaataaaat cccgcgcggt gtctggatgg cgtaaaaaag atttaaatac cgcatcatgc
      301 ggcgtggaag ttgtcgatat tgtcatggcg ttccgtcacc cctcaaattt aagatgacgc
      361 gacaataacc acgattaaca cccaatgcag caggcagttt ttatctttgg acagcgaatt
      421 cagaagtatt tttagcggac tgcaactttt acatttcagc ggaagctgac tcgcaaattc
      481 cccatgaaaa tactccggca gcgttagcca ccggagagga aattatttca gcgatccctt
      541 aaggaactgt tgcagacgag ggctttgcgg gttgccaaat aactgctccg gcgcgccctc
      601 ttcttctatt ttcccctgat ggaggaaaat gacatgagta gaaacatggc gagcaaagcc
      661 catttcgtga gtcactacca ccatggtttt cccctcttct gccagttgct gcataatacg
      721 caacacttcg cctaccagtt caggatcgag cgccgaggta ggttcatcaa acagtaaaac
      781 ttccggttcc atcgccagcg cccgcgcgat agaaacacgc tgttgctgac cgccggaaag
      841 atgcaccgga tatttcccct gcgcacgttc gtctatcccg acttttgcca gatacttgac
      901 cgcccgctcg tgcgcttcct gcttgctcag gcccaacacc tgaatcggcg cttccatgac
      961 gttttccagc accgtcatat ggctccagag attgaagtgc tggaatacca tcgtcaggcg
     1021 tgtgcgcagt aagcgcagtt gatttttatc ggcgactttg agttgaccgt ctttgtcgcg
     1081 caccagattg atcgtctggc cattgaccac gatcgaccct tcactcggtt tttcgaggaa
     1141 gttaatgcag cgcagaaagg tacttttccc cgatcccgac gatccgatga tgcttattac
     1201 atctccggca ttcgcttgca gtgagacccc tttcagcact tcatgttcgc cgtagcgttt
     1261 gtgcaaatcg ataacgttta atttattctc ggacatcgta ttctcagtgc gttgaagaag
     1321 gtttcacatg ctgcaaccag cgtttttccg ctctgcgaaa gaggctgatc aggacataag
     1381 agatgattaa atagagcacc gcggcaatgc cgaaggcggt aaaaggttga tacgtggcgg
     1441 cgttaatatc gcgggctatt ttcagcagat ccggcacagt ggccgtaaac gccagcgcag
     1501 tagagtgcag catcaggatc acttcgttgc tgtatgccgg taacgcaata cgcagcgcag
     1561 aaggcaaaat aatgcaacga tacattttaa aagtcgagaa gccataggct ctggcggctt
     1621 caatttcccc atgcagaacc gaacggattg ccccagcaaa aatctcggta gtgtaagcgc
     1681 aggtgttaag cgtcagcgcc agcacggtac agttcaggcc actgcggaag aaagcgttaa
     1741 ggaattcggt tcccttaaca atctcaagcg tgtatatgcc ggaatagaac accagcaact
     1801 gaacatacag cggcgtaccg cgaaaaatat aggtaaataa ccagattgga aactggatgt
     1861 atttattact ggagacacga ccaatcgcca gaaacagcgc caggactccg cctatcacta
     1921 ccgacaaaat aagcagccac agagtgatcg ccacaccagt aaagcgataa ccgtcggtcc
     1981 acagcagcgg tttccagtat tcatgtaaga tttcgatcac aggtcagccc tcttcacacc
     2041 cacggagtag cggcgctcaa ggaacagcag cacaccattg gaaacagtgg tgaaaaccag
     2101 gtaaatcacg ccacagacga tggcgaaata gaacggttcc caggtacttt tgcctgccag
     2161 ttgggtggct ttgaccacat cttccaggcc gagtaacgaa accagtgcgg tagatttgag
     2221 gatcacctgc cagttgttgc caatgcctgg cagggcgtaa cgcatcatcg ccggaaacat
     2281 gatccgccga aacacttgcc cacgagtaaa accgaacgcc gtcgccgcct ctatatgtcc
     2341 tttcggcact gccataaaag caccacggaa cgtttcggta aaataagcac cgtagataaa
     2401 accgagagtg ataataccag cgaccatcgg atcgatatca atctgcccga cgcccatcgc
     2461 ctccgtcacc gtgtttagcg caatctgcaa accgaagaaa atcagcagca tcaacactaa
     2521 gtccggcacg ccacgaatca gcgtggtgta cccttcgaaa atcagccccg aaagccgatt
     2581 ttgcgagagc ttaccgccag cgccaattaa accgatgatt acagcgagca ctacagagct
     2641 gatagccagc tccagcgtga cgagcgcccc ctgtaaaata acacctgaaa acccatataa
     2701 catgctgcct gtcctgtcgt gtgtggtgaa ttaccgcctc ttgtctccct ccggttaccc
     2761 gaagggagcg ggctttcttt caccgatggc gattagccac cataaacatc aaaatcgaag
     2821 tactttttcg ctaatttctc gtaagtaccg tcagcgcgca tttcggcaaa ggctttgttc
     2881 agtgcttcgc gcagttcgtt atcttcttta cgcaggccca tgccggtccc tacgccaaac
     2941 agtttttcat ctttaacaga cgggccaccg aatttgtaat ctttaccgac aggttgtttg
     3001 aggaaacctt cgctggcagc gacctcatcc tggaacgcgg catcaatacg tccggcagtc
     3061 aggtcagaat aaatgttgtc ctgcccctga tacgagacga tttcaatgcc ttttggtgcc
     3121 caatgttcat taccgaacgt ctcctgggtg gtgccctgca atacgcctac ccgtttgcct
     3181 ttcagcgact cgactgtcgg ctgaatgtca gaatttttcg ccaccaccaa acgagaatcg
     3241 gcagcgtaca gtttgtcggt gaaggctatt tcttgctgac gtttttccgt aatggaaagc
     3301 gatgacatga tggcgtcaat cttcttcgct tttaaggacg ggattaacgc atccagcgga
     3361 ttttcgacaa acgtacattg cgtattgatg cgtttgcata attcctttgc cagatcgata
     3421 tcgaagccaa ccagttcgcc ttgtgaattt tttgattcaa atggcgcata ggtcgggtcg
     3481 gtaccgatgc ggatgttttg cggaatcgca gcaaatgccg cagttgcgct ggagaaggcc
     3541 agaaccagag agagcgatag caccagtttt ttcataatgt cctcaactga cagtcttttt
     3601 atagggaata tttacaggtt tgttacactt atcgtgccat aaaattgacc atcaaggcaa
     3661 aatatcccgc cccgttagat gtattatttt tcattaaaaa tgcttaagta tgcatttcaa
     3721 tgcaccacga tagtgcaaca aacctagcgt gcaccatgat gatcattcca tcaggtacag
     3781 cttcccagcg acgtatcagt caccgtagac attaaagtcg aaatactttt tcgccatctt
     3841 gtcgtaggtg ccgtcctgac gcagctcgcc aagcgcctta ttgaaggcag ccgtcagttc
     3901 agcatcatct ttacgtagcc ctacaccggt gccatcaccg aagtattttt tgtcttttac
     3961 tgatgagcca gcaaaggcga aatctttacc agcaggttgc ttgaggaatc cttcgctggc
     4021 agcaacttca tcttgtaacg cagcatccag acgtcctgca gccagatcgg aatagaccaa
     4081 atcctggttg gcataggcca ccacatccac gcctttgcta cgccaggtct cgttagcgta
     4141 agcttcctgg gttgatccct gcagcacacc aacatgttta cctttcagtg aatccagcgt
     4201 tggctgaatc ggtgaacctt tggcagcaat caaacgagaa tctgcggcgt acagcttgtc
     4261 ggagaaggca atctcctgct gacgtttatc ggtaatggaa agcgacgaaa taatggcgtc
     4321 gatttttttc gctttcagtg aggggatcag cgcgtcaaag tcactggcaa cccaggtaca
     4381 tttcacctgc atccgtttgc acatctcgtt accgagatcg atatcaaagc caacaaaatc
     4441 acctttagca tctttcgacg agaacggcgc ataggtggta tcggttccga tacgtaccgt
     4501 ctccggtagc gccgcatagc tggaagccgc tgcggagaga ccgactaaca aagacagagc
     4561 gagaatcgac ttcttcatac ataaccctca agtgaaaatg gcttttttat gttgtgtatt
     4621 gtgttgtgtg tttgcaggct ctttcatgca ggtcttatgc catcttgacg acaacagtaa
     4681 cattcaacgt taaatatgtt aataagacgt tgcattattg tcctgaagtt gaagatagca
     4741 ggtatagcgg ttgaatcgca gcgtttcgat tgaatggcag aaacaaaatg tcgaggattt
     4801 gatcgcggtt gcaaaattgc cctgaaacag ggcaacagcg gagttatgcg ccctgccagc
     4861 gggcaaagag atcttcagga agggttattg caaactggtc aagaacacga ttaaccgtct
     4921 gatttatcac atcatcaagg gattgcgggc gatgataaaa cgccggaaca ggaggcataa
     4981 tcaccgcacc gatttctgcc gcctgagtca ttaaacgcag atggcctaag tgcaatggtg
     5041 tttcacgcac gcagagcacc aacgggcgac gctctttcag caccacatct gccgcacggg
     5101 tcagtaagcc atcagtatag ctatggacaa tgccggaaag ggttttgatt gaacagggta
     5161 aaatcaccat ccccagcgtc tggaaagaac cggaagagat gctggcggaa atatcgcgcg
     5221 catcgtgcgt gacatcagct aatgcctgca cttcgcgcag ggaaaaatcc gtttcgaggg
     5281 ataaggtctg gcgcgccgcc tggctcatca ccagatgcgt ttcgatatct gtgacatcgc
     5341 gcagaacctg taataagcgc acgccataaa tcgcgccgct ggcaccgctg atgcctacaa
     5401 tgagtcgttt cataaatagt tgccctgtca gacttgcagg cagactttgc agtatttcgg
     5461 cgggagttgc aagtcagggt gccagaccgg caccctcagc gaaggcatca tccttcgtta
     5521 tgcatttcga gattttccac ttcgttctga cgttgcactg ctttggcgtc atcattacgt
     5581 aacgtatcga ggaaatcgag gtagtcctga tcaacatctt tggtgacgta gacgccgttg
     5641 aacaccgagc attcaaactg ctggatatcc ggattttcag cgcgaacggc gtcgatcaga
     5701 tcgttcagat cctggaaaat caacccgtca gcaccgatga tctggcgaat ttcatcaact
     5761 tcgcgaccgt gagcgatcag ttccgtggcg ctcggcatat caataccata aacgttcggg
     5821 aagcgaattt ccggggccgc agaagcgagg tacactttct tcgctccggc ttcgcgtgcc
     5881 atctcgataa tctgctcaga agtggtgcca cggacgatgg agtcgtcgac cagcaggacg
     5941 tttttatcgc ggaactcggc gcggttggcg ttcagtttac ggcgcacgga cttacgacgc
     6001 agctgctggc ccggcatgat gaaggtgcgg ccaacatagc ggtttttaac gaagccctgg
     6061 cggtacggct tgcccagaat acgagcaatt tccagcgcga tatcacacga ggtttccggg
     6121 atcgggatca ccacgtcgat atccagatct tcccattcgc gggcaatttt ctcacccagt
     6181 ttcgtgccca tattcacacg cgcgctgtaa acggaaattt tgtcgataaa cgagtccggg
     6241 cgggcaaagt atacatactc aaacaggcac ggattgctga ccggattgtc agcacattga
     6301 cgggtaaaca actgcccttc ttcagtgatg taaatcgctt cgcccggcgc gacgtcacgc
     6361 aggaaatcaa agcccagcgt atcgagcgct acgctttcgg aagcgaccat atattctgta
     6421 cggttctcgt caatatcacg ttttcccagt accagcggac gaatcccgtt tggatcgcgg
     6481 aaagcaacca taccgtggcc gataatcatc gccacacagg catatgcgcc gcggattaag
     6541 cggtttgtgg cagcaatggc agcgaaaata ttgtcggctt ccagcgggta gtggcggaag
     6601 ttgtccagct cgctagcgaa gatattaagc agaatttccg agtcggaagt ggtgttgatg
     6661 tggcggcgtt tttcttcaaa cagtttttta cgcaactcgt gagcgttggt cagattgccg
     6721 ttgtgggcaa gcgtaatgcc atacggggag ttaacgtaaa acggctgcgc ttcagaggcg
     6781 ctggagctgc cagccgtagg gtaacgcaca tgaccaatgc ccatattgcc ctgcaaacgc
     6841 tgcatatggc gagcttcaaa tacatcgctc accagcccgt tcgctttacg caaacggaag
     6901 cagttattgg catctatggt gatgatgccg gcggcatcct gaccgcgatg ctgaagcacc
     6961 gttaaggcat cataaatcga ctggttaacc ggcataacac cggcgatacc gacaataccg
     7021 cacatacgtc tttttcctcg ttaagccaca tctcagagca cttacgctct gggcaagaaa
     7081 cttgacgagc tttgcagata atcaaaaaac catctgatga taaaactgaa ctgcgggatc
     7141 agctgtgatt tgctccagtc ttcgcttttc gacaccccgg taaaggagtc gagaaagaag
     7201 agaatggcgg caacaatcaa cacaccgcgc aacgcaccga aacagacgcc cagcacccga
     7261 tcggtgcctg acaaccccgt tttctccacc aactggccta tcacgaagtt cacgatagca
     7321 ccaacgatca gggtagcgat aaacagtacc gcgatggcaa ttccatttcg aaccagttcg
     7381 tcttcaaagc ccgtaaacca gactgacagg taagtgtagt aatgactggc aacaaagaaa
     7441 gcacaacccc atgtcaccag cgataacgct tcacgaacaa agccgcggat caggctaacc
     7501 agagaggaaa aagcaatcac cgcgattatg gcgtaatcaa tccagaccat atgtgtccca
     7561 cgattttacg ccctgtcatc ctgttcgggg cgcattctaa cagaaaaaga aaacgtttgc
     7621 gtagggattt ccttcccacg catcaataaa aatggcgctg aaaaaatatt caacgccatc
     7681 gactttttat gcctttgcgg catcgtgcaa tgcgtgtcgg atgcggcgta aacgccttat
     7741 ccgacctacg gttctaacac tgcccaagcc tgataagacg cgccagcgtc gcatcaggca
     7801 agactgtatt aattcggcgt atagcccatt accacgccac ttaagccaga aagttgcttc
     7861 aactcaccca gcgaaccttt cagcttatct ttcgaggcat ccggcccaac cagaatacgg
     7921 gtaattttac cctgcactgg cgtggatggc gacgtataaa cccgataacc ggcaccgcgc
     7981 agcttaccga caatctcatt cactttatcg gcatttttca gcgcacccag ttgcacaaca
     8041 taggctttac ccgttggcgc tgctttttct tccacgaccg gcttcggttc tggcttcggc
     8101 gcaggtggtg cttcaacctt cggtttaggc ggctccaccg gtttcggctt cggtggggcg
     8161 accggtgcag gttccggttc aaactcggtg ttattggctg caatagtggc cggatcgagc
     8221 gacggtgctg cggcatcacc tgcccgcacc tcttccgctg cgccttccgg cggctgcgtc
     8281 ggcaacgcct gggtggcggc tggcatcata tcaggctcat cgcgatcgcc cgcttttgga
     8341 accagcggga tagccgcaaa ctcatcctga taatgttttt tctgcccgtc cagcagccct
     8401 ggaagtacaa tcacccccag cgccaccagc acgatcgtgc ccactaaccg attctgaaac
     8461 ttacttgcca ccgcttctcc tcgcgtcaat cacttccatg acatgtgcga ccgtgtggaa
     8521 agaaccacac accagcacgg tgtcttccgc tttagcgtcc gccattgcgg catcccatgc
     8581 ctgcgcaacg ctatcaaatg atttgccgtt acccaaatgc tcaagcagtt gttctgccgt
     8641 ggcaccgcgc ggcccttcca gtggcgcaca ataccagtca tcaaccacgc ttttcaacca
     8701 ggccagagtt ccggcaatat ctttatcatg tagcataccg ataaccgcca gcacgcgccc
     8761 gtttttcggt agcgctttca tacgcccggt gagatattcc gccgcatgtg gattatgcgc
     8821 gacatcaaaa ataacgcgtg gcgactcgct cacaatctgg aaacgtcccg gcaaaattgc
     8881 gctggcaatc ccgtcgcgaa tggcattttc actgacttcc agcccgctgg cacgcagtgc
     8941 cgccagcgct gttgcggcat tcggttgcgg gacaagcggc aacggcagat tttccagcgt
     9001 gccgtgagca tcgctaaacg cccagtcatg atcggtgacg gaatagttcc actcaacgcc
     9061 ccgacgttgt aacagtgcac ctttttcctg cgccacatca gcaatggtag aaggcatttc
     9121 cggctcaccg acaattgccg gttttgcgct gcgaaagatg cctgctttct cgcgaccaat
     9181 actttcgcga tctggcccca gccagtcggt atgatccagc gcaatactgg ttactaccgc
     9241 gacatcggca tcgacaatat tggttgcgtc cagacgaccg cccagcccta cttccagaat
     9301 caccacgtca agttgtgcct gtttgaacag ccacaacgcc gacagcgtac cgtactcgaa
     9361 ataggtcagg gaaatatcac cgcgtgccga ttcaatctcc gcaaaagagg cggtgtgggc
     9421 cgattccggc aattcctgcc cctgcacacg tacgcgctcg gtataacgca ccagatgcgg
     9481 cgaactgtag acgcccactt tgtaccctgc cgccatcaga atcgactcca gcgtacggca
     9541 ggtggtgcct ttgccattcg tacccgcaac ggtaaacaca aatggcgctg gtttcagaac
     9601 gccaagacga gccgcgacct ggctcacgcg ctcaaggccg agatcgatag ttttactgtg
     9661 caggttttcc agataagaaa gccacgaagc cagaggcgac gcggcttgag gagtgcgttt
     9721 gataatcatg gtatccgctg attcgttacg gtgagaatag caaaagggca gagccagtgg
     9781 ccctgccctt atcagttatc aggcctcagg ttcctgatcc ggtaccgggg gtaccactac
     9841 gccttcacgc ggcgcttcag gattcggcgc tggcagattc atcaacttcg ccagaatgct
     9901 cgccagtttc aggcgcattt ccggacgacg gacgatcatg tcgatcgcgc ctttctcgat
     9961 caggaattca ctgcgctgga atcctagcgg cagtttttcg cgaacggtct gttcgataac
    10021 acgcggaccg gcaaagccaa ttaacgcttt cggttcagcg atgttgagat cgcccagcat
    10081 ggcgaaactt gcagaaacac cgcccatcgt cgggtcggtc agcacggaga tgtacggcaa
    10141 gccgcgctcc tgcatttttg ccagtgccgc agaggttttc gccatctgca tcagcgacat
    10201 cagtgcttcc tgcatacgtg cgccaccaga ggcggagaag cagatcagcg ggcagttatc
    10261 ttccagcgcc tgctcaacgg cacgcacgaa acgtgcaccc acaacagacc ccattgaacc
    10321 gcccataaag gcgaactcga atgccgcagc gacaaccggc attccataca gagtgccttt
    10381 catcaccacc agcgcatctt tttcgccggt ttctttctgc gcagaagcca gacggtcttt
    10441 atacttcttg gagtcacgaa acttcagcac atctttcggc tcaagctcgc tacccatctc
    10501 cacaaggctt ccttcatcta acaggctatg caggcgatta cgcgctgtca tacgcatgtg
    10561 atggtcacac ttcggacaga cctcaagatt acgttccagc tcagcgcggt ataaaacctg
    10621 accgcagcta tcacacttag tccacacccc ttcaggaatg ctcgccttgc gggtgggagt
    10681 aatgttgctt ttaattcgtt caatccagct cattagggac ctttctgtct gaacctggtt
    10741 cgatgccagt tttatctttg gggacgcata atgccatttt tgcccccaac agaccatgaa
    10801 tgttgcacat taaaacataa cagcccgaaa ctttggataa aaaagtggtc gaaccgcgga
    10861 gttacttttt attttgcggc gcgtgccgca gcgcgtttgt gacgaataaa ttcgaaaacc
    10921 ccaggcaata ttgaaacaaa aataatgcca acaatcatca gcttaaggtt gctctgaatg
    10981 aaggggagca tgccgaagaa ataacccgcg taggtaaaaa tcagtaccca caacagtgcg
    11041 ccgatcacgt tataagcggc gaaatgacgg tacgacatgt ggcccattcc cgcaacaaac
    11101 ggcgcgaacg ttctgacgat cggtacaaaa cgggcgagaa taatcgtttt gccgccatgt
    11161 ctctcgtaaa actgatgagt cttatcaaga taactgcaac gaaagatttt cgaatccggg
    11221 ttactgaaca gtttgtcacc aaataaccgt ccaatggtat agttcactgc atcaccgaca
    11281 atagcggcaa tcaacataag caccaccatc atatggacat tgagatcgtt agtttccagc
    11341 gacgccaatg caccagcaac aaacagcagc gaatcaccag gcaggaatgg cgttaccacc
    11401 agccccgttt cgcagaacag aatcaaaaac agaatggcat aaacccagac gccgtactcc
    11461 gcgaccagct ctgccagatg cacgtcaatg tgcaggataa aatcgatgag gaaataaatc
    11521 aggtccatat ttgcctatgc cttgtactcg tcatctttca ggctgtaact acgttggcta
    11581 cagcctgaaa tgttccgagc attattctcg ttagtccgcc agaaatagcg ggcccattgg
    11641 cggttttgga agatcatacc ggtcagggta atccaccgcg accagataca gcccttccgc
    11701 ttttgccgtt gctgccgcca gcgttctgtc ctttgccgcc agcaactctg ctatccagct
    11761 ctccggctgg ttgtgggcac cgacttccat caggctgccg acaatattcc tgaccatatg
    11821 atgtacaaag gcattcgctt tgatatctac caccacataa ggaccgtgac gcgtgacatt
    11881 aatatgcata acgttgcgcc acggggttcg ggactggcac tgcaccgcac ggaacgaggt
    11941 gaaatcattc tcgcccagca agcattgcgc agcccgatgc atccgttcag cgtccagcgg
    12001 ttcgtaaaaa tgggttaccc ctttactcag taccgccggg cgcagccgat gattgtagat
    12061 gatgtagcga taacggcgag ccgtggcgct aaatcgggca tgaaaatcat caggtacagc
    12121 tttaacccaa cgcacggcga tgtcatcagg taaattcgca tttacgccca aggtccacgc
    12181 cgcgtctttg cgcggcgcgg ttgtttcgaa atgcaccacc tgcccggtac cgtgtacccc
    12241 tgcgtcagta cgcccggcgc agaagacggt gatgggttcg ttcgccacct gggagagcgc
    12301 cttttccagc ttctcctgca cactgcggac ttcattctgc cgttgccagc cgtaatactt
    12361 actgccgtcg tactcaatgc ccagcgcaat tttataaact ggcagttgtt gctggtcgga
    12421 cattagtaca gatactcctg caccagtttc tcggcgattt ttactgccat cagcgcgccg
    12481 ccaaagcgaa cgttatcggc caccgaccag aactggactt gctccggcat accgtagtca
    12541 ttacgcacgc agccaacaga aagatgcgga gtacccgaag catcccctac ctgagtcggg
    12601 aattcgttct cttcagagag cacaatatct tcgccctgag caaacgcatc acgcgcttct
    12661 tctgccgcca gcggacgcag tgcttcaaag ttgaccatct gggcatgacc gtagaatacc
    12721 ggtgcctgga cgacgcttgc cgaaatcatc agcccttcgt cctgcaggat tttgcgtact
    12781 tcgtcaacga tacgacgttc ttcacgcacg ctaccttcgc tatccggcaa caacggcagc
    12841 atattgaacg ccagttgacg accgaagaaa tcttcttcgt caatcggaat gccgttgagc
    12901 aatttcgcac tctgccccgc taacgcatcg accgcttttt tgccctgggc ggaggctgaa
    12961 atcaggctgg taacactgat acgcgacaaa ccgccctgat cgattaacgg tttcagtgcc
    13021 gccagcagct ggctggtcag actgtctggt acggcgatga cattccggtt gcggtaatcg
    13081 gtcagtacaa acgggtttac ttccggcacc accagcggta cgtcgggttc gagagcaaac
    13141 agtccgctgc tgtcgatcac caggcaacct gagttggtcg cttcttcaac ccaggcagcg
    13201 gtagcttctt tgcctgcgac aaaaaatgcc agctgcgcct gcgtccagtc gaattcagcg
    13261 gcatcctgca cggtgattgt tttaccacca aagcgcagtt gttcgcctgc gctttcgtta
    13321 cgtgccagtg cataaatttc cccaaccggg aactgacgtt cagccagcgt ttcaagcagg
    13381 gcttcgccca cagcgccagt tgcgcccagg acggcaatgt tccagccttc agacatggtg
    13441 gtttactcca gaaatagcaa agctccctgc caatgttaca gcagagagca tgaagaagag
    13501 attaacgtgc cggatgatga acggcgttaa aacccagttt acacagcaat gatgccgcac
    13561 tggcgtcatc acaaattaca tacagagatg accattcacg gcgctcaaga tagtttttgc
    13621 gcagtttatc gaactcaccc ggtatcccgg cgactttacg cagcggtgcg tcatcgcggc
    13681 gcacatcata caccaaatgc accagccttt tcagcgtcgg ttgatcgagc gggccatgca
    13741 gcgtaatgcg accaaactct ggcgcgggca gtaatgtatc cagcgcaacg tgctgttcat
    13801 gcccaataaa cttgctataa gcttcaaaca cttgcgtagt accgcgtgct ttaccttcca
    13861 gggtataacc tgcgatatgc ggcgtgccga tatccacttt tgtcagcaac tccacgttaa
    13921 gttccggttc gccttcccag acatccagca ctacgcttaa cttctggcct tcattcaggc
    13981 aggtcagcaa cgcagtatta tcgacgactg cgccacggca ggcgttaatc agaatcgctc
    14041 ccggcttcag gctacggatc agtttttcat ccgccagatg cagcgttttg tacggcccat
    14101 ctttgaagag tggcgtatgg aaagtcagaa tatccgcatg ctgaactaat tcatccagcg
    14161 agcggaaatc accctcatcc ccacggtcag cgcgaggcgg atcgcaaagc aatgttttaa
    14221 tccctaacgc ttccagtcgc gcctgcaatc gacgtccaac gttaccaacg cccacgatcc
    14281 ccaccgtacg gtcgtgcagt gaaaatccat cgcgttcggc aagcatcagt agtgaggaga
    14341 aaacatattc caccaccgca atcgcattac agccaggtgc agcggaaaaa ccaattcccg
    14401 cctgcttcaa ccatgcttca tcgacatggt cggtccccgc agtggcagtg ccaacaaatt
    14461 taatgggttt tcctgccagc aaagattcat tcactttcgt gaccgaacgc accatcagcg
    14521 catccgcgtc tgccagttga gcgacggcga ttggacgccc gggaaccgcg gtcacctcac
    14581 ccaaacggct aaataagtcg cgggcataag gcatattttc atcaacaagg attttcacgt
    14641 ttgtgttacc tgtatgagac gagagttaac cggacaagtg tgccataatc tcgcggccag
    14701 gcatacttgc gaagatttca ggtataagga tacgtaatga tacaacctat ttccggccct
    14761 cctcctgggc aaccaccagg tcagggagat aacctgccgt ctggcgcggg caatcagcct
    14821 ttatccagtc agcaacgtac ttcgctggaa agcttaatga cgaaagtgac ctcactgacg
    14881 caacagcaaa gagcagaact gtgggcgggt atcaggcacg atattggtct gtcgggagat
    14941 tcaccgctgc tttcgcgtca cttccctgcc gctgagcata atctggcgca acgtctgctg
    15001 gccgcgcaaa aaagccattc tgcccgccag cttttagcgc aattagggga gtatttacgt
    15061 ctggggaata atcgtcaggc ggtcacggat tatatccgtc ataactttgg tcagacgccg
    15121 ctgaatcagc tctcaccgga gcaattaaaa accattctca ccctgttgca ggaagggaag
    15181 atggttattc cgcaaccgca gcagcgcgag gcgaccgacc gtcctttatt accggcggag
    15241 cacaatgcgc taaaacagct ggtgaccaaa cttgcggcgg caacggggga acccagcaaa
    15301 cagatctggc aatcgatgct ggaactttcc ggggtgaaag atggcgagtt aattccagcg
    15361 aaactgttta accatctggt gacctggcta caggcgcgtc agacgctaag ccagcaaaat
    15421 acgccgacgc tggaatcact acagatggcg ctaaaacaac ctttagatgc cagtgaactg
    15481 gcggcgttat cggcatatat ccagcaaaaa tatggccttt ctgcgcaatc atcgctttct
    15541 tctgcccagg ccgaggatat tcttaatcag ctttatcaac ggcgggttaa agggattgat
    15601 ccgcgtgata tgcaaccgct gcttaatcct tttccaccga tgatggacac gttgcaaaat
    15661 atggcaacgc gtcccgcgct gtggatactg ttagtcgcga ttatcctgat gctggtctgg
    15721 ctggttcgtt aaccccgacg aaatgacagt atcgtgacaa taatacccag caccgcagag
    15781 atcgccccgg caagaaatac cgaagagtaa ccaaacgtgg tcgccagcat tcccgccagc
    15841 ggcccggaga cgccgagggc gatatcctga aacgcggcgt aaccgcccag tgcggtgccg
    15901 cgaacttgtg aggggacgcg tttaaccacc tccacgccca gcgcaggaaa gataagcgaa
    15961 catccggctc cggttaacgc cgcgcccgct aatgcgaccc atgcacctgg ggcttgccag
    16021 agcagcaaca agcccaccgt ttctacaagc agagagacaa tcgccacttt cacgccgcca
    16081 aaacggtccg gcatccagcc aaacatgacg cgcatcacga caaatgcgcc gccaaacgcg
    16141 gtaagagtaa agcccgccat cgcccatcct ttgctggcaa agtagagcga aacgaaagtc
    16201 ccgataaccg caaaaccaac gccttgtagt gccagcccta accctggttt ccagataagc
    16261 ccgacaacgc tccacagcga tggacgttct cccgccaggg ccggtacttt gcgcactgtg
    16321 ccgttacagg cccacgccag taagggtaat accattgtgg tgatcgccag tgcggcaaaa
    16381 ccgtaatggc tatgaatcaa caggccaagc ggcgcaccaa cagcgagggc accgtaaatc
    16441 gccattccgt tccatgacat cactttgcca gagtgttttg cccctacgat gcctaatccc
    16501 caggtcagag cgcctgtcag taactggctt tcaccaaagc caagaatcaa acgcccgacg
    16561 accaacaggg caaatttcaa cggtgcggag acaggcaaaa tcgccgccag cagcaacgcg
    16621 ccgccagcca gaccacaagc taacatcccc tgaagcgccg aacgttttgc accatattga
    16681 tcggccagtc gcccggcata gccacgcgtc agcaccgtag ccagaaactg aatcccgacg
    16741 gcaatcccga ccatggtatt gccatagccc agatcatgat gaacaaacag cgggataacc
    16801 ggcaacggca gccctacggt catgtaggtg agaaaaaccg caaaagcgat gcggaagagc
    16861 gaaaaattgg cagaagatcg tgtttcggtt tggcttacag cagtcatgca ttactccaga
    16921 atgcagcgca aggcgaggag tatccccgtc tcatctctct ggtttcaggg ttacagtgcg
    16981 ttggcaggat ttaacgcgta cgtcttttca gaaggaaatc gacaaagcgg gaagtttgcc
    17041 tggaactggc ggcgattgtc aatgatgtga aaaagggaac catcaggttc ccttttgcgt
    17101 tagtgccgga ggccgcattg gcgcgtaacg tcggatgcga cgctggcgcg tcttatccga
    17161 cctactccga ctactccgac tactccgact actccgacta ctccgactac tccgactact
    17221 ccgacctact gcgaattaat ctttcagctt gcgcattacc agcgtggcgt tggtgccgcc
    17281 gaagccgaag ctgttagaca taacggtggt cagttcgcga tcggtcgttt cggtcacgat
    17341 gttcagacct gccgcctgct cgtccagctc ttcaatgttg atgctcgggg cgataaagcc
    17401 gtgttccagc atcagcagag agtagatagc ttcctgtacg ccagcagcgc ccagagagtg
    17461 accggtcatg gctttggttg cagaaatcgc cgggctctta tcgccgaaca cttcacggat
    17521 agctgccagt tctttcacgt cgccaaccgg agtcgaagta ccatgagagt tcaggtaatc
    17581 gattggggta tcaacgccgt gcatcgccat cttcatgcag cgtactgcgc cttcgccaga
    17641 cggagcaacc atgtctgcac catcagaggt tgcgccgtag ccaacgattt cagcatagat
    17701 gtgagcacca cgcgccagcg cgtgttccag ctcttcaacc actaccatac cgccgccgcc
    17761 agcgataacg aaaccgtcac ggtgagcgtc gtaagtacgg gaggcttttt ccggggtgtc
    17821 gttgtattta gtagacagcg cacccatcgc gtcgaattcg caggccattt cccagcacag
    17881 ctcttcgccg ccgccagcaa acacgatgtc ctgtttgccc agttggatct gctctactgc
    17941 gttaccgata cagtgtgcgg aagtcgcaca cgcggagctg atggagtagt taacgccatg
    18001 aattttaaac ggcgtggcga ggcaggcaga aacgccggat gccatcgctt tggtgaccac
    18061 atacgggcca accgctttca ggccgcgcgg gccgcgcatt gcgtcagcgc cgaatacctg
    18121 gaaacgcggg gaaccgccgc cagaacctgc aatcaggcca acgcgcgggt tattctggta
    18181 agcttccgga gaaaggcccg catctgcgat tgcctgctcc atagaaagga atgcataaat
    18241 ggatgcgtcg ctcataaagc gcacaacttt gcggtcaatg aggccagtgg tatccagttt
    18301 tacgttgccc cagacgtggc tacgcatgcc ggaatcctta agctcctgag agaaagtgat
    18361 ccctgaacgt ccttcacgca gagatgccag gacttcctgc tggttattac cgatgctgga
    18421 aacaatgccc aggccagtaa tcactgcacg tttcattcaa tacctctgta agtcgcacat
    18481 agagtaagtt tcgaatgcac aatagcgtac acttgtacgc cgaacaagtc cgatcagcca
    18541 tttaatagag aaatttgcgc agccttacac acatcgctaa gatcgagcca ccgcctgtaa
    18601 gacgagtaac ttacgtgaaa cactactcca tacaacctgc caacctcgaa tttaatgctg
    18661 agggtacacc tgtttcccga gattttgacg atgtctattt ttccaacgat aacgggctgg
    18721 aagagacgcg ttatgttttt ctgggaggca accaattaga ggtacgcttt cctgagcatc
    18781 cacatcctct gtttgtggta gcagagagcg gcttcggcac cggattaaac ttcctgacgc
    18841 tatggcaggc atttgatcag tttcgcgaag cgcatccgca agcgcaatta caacgcttac
    18901 atttcattag ttttgagaaa tttcccctca cccgtgcgga tttagcctta gcgcatcaac
    18961 actggccgga actggctccg tgggcagaac aacttcaggc gcagtggcca atgcccttgc
    19021 ccggttgcca tcgtttattg ctcgatgaag gccgcgtgac gctggattta tggtttggcg
    19081 atattaacga actgaccagc caacaggacg attcgctaaa tcaaaaagta gatgcctggt
    19141 ttctggacgg ctttgcgcca gcgaaaaacc cggatatgtg gacgcaaaat ctgtttaacg
    19201 ccatggcaag gttggcgcgt ccgggcggca cgctggcgac atttacgtct gccggttttg
    19261 tccgccgcgg tttgcaggac gccggattca cgatgcaaaa acgtaagggc tttgggcgca
    19321 aacgggaaat gctttgcggg gtgatggaac agacattacc gctcccctgc tccgcgccgt
    19381 ggtttaaccg cacgggcagc agcaaacggg aagcggcgat tatcggcggt ggtattgcct
    19441 gcgcgttgtt gtcgctggcg ctattacggc gcggctggca ggtaacgctt tattgcgcgg
    19501 atgaggcccc cgcactgggt gcttccggca atcgccaggg ggcgctgtat ccgttattaa
    19561 gcaaacacga tgaggcgcta aaccgctttt tctctaatgc gtttactttt gctcgtcggt
    19621 tttacgacca attacccgtt aaatttgatc atgactggtg cggcgtcacg cagttaggct
    19681 gggatgagaa aagccagcat aaaatcgcac agatgttgtc aatggattta cccgcagaac
    19741 tggctgtagc cgttgaggca aatgcggttg aacaaattac gggcgttgcg acaaattgca
    19801 gcggcattac ttatccgcaa ggtggttggc tgtgcccagc agaactgacc cgtaatgtgc
    19861 tggaactggc gcaacagcag ggtttgcaga tttattatca atatcagtta cagaatttat
    19921 cccgtaagga tgactgttgg ttgttgaatt ttgcaggaga tcagcaagca acacacagcg
    19981 tagtggtact ggcgaacggg catcaaatca gccgattcag ccaaacgtcg actctcccgg
    20041 tgtattcggt tgccgggcag gtcagccata ttccgacaac gccggaattg gcagagctga
    20101 agcaggtgct gtgctatgac ggttatctca cgccacaaaa tccggcgaat caacatcatt
    20161 gtattggtgc cagttatcat cgcggcagcg aagatacggc gtacagtgag gacgatcagc
    20221 agcagaatcg ccagcggttg attgattgtt tcccgcaggc acagtgggca aaagaggttg
    20281 atgtcagtga taaagaggcg cgctgcggtg tgcgttgtgc cacccgcgat catctgccaa
    20341 tggtaggcaa tgttcccgat tatgaggcaa cactcgtgga atatgcgtcg ttggcggagc
    20401 agaaagatga ggcggtaagc gcgccggttt ttgacgatct ctttatgttt gcggctttag
    20461 gttctcgcgg tttgtgttct gccccgctgt gtgccgagat tctggcggcg cagatgagcg
    20521 acgaaccgat tccgatggat gccagtacgc tggcggcgtt aaacccgaat cggttatggg
    20581 tgcggaaatt gttgaagggt aaagcggtta aggcggggta atctgctctc gcagtgtttg
    20641 ccggatgcgg cgtgaacgcc ttatccgacc tacgtgtgac gtgtaggcct gataagacgc
    20701 gataagcgtc gcatcaggca tggtgctcca gacgccgcaa cttactgctg tgacgcctgc
    20761 tgaaacaggt tttcccacat atcggtcacc agcgcctggt cacgcggcga caattcaccg
    20821 gcaccaatgg ctttttccag actctggcta acggtcgtat gcaccgcctg agcggagtgg
    20881 tcatcaccac tttccagttc tgcgatggct aatgtcaggt ggccacgcaa atacccactg
    20941 gcaaacaact catcatcact ggcatggtca atcatgccgt cgattaatgc cagaatgcgt
    21001 gattcaaact ccgcgatcat cttctttcct cattgtaaaa cgtggcaccg gcttcagttg
    21061 agcgcttccg gccacgggaa ctgttccgcc gtaagttccg gcgtgtgata ataattttgt
    21121 agtgctttaa tgaagcgtgc cggacgctcg ggaatgccat ttgtcagata atccatcacc
    21181 tgcgcatgta cccgccgttg aaacaccaca cgatccggtt cgaagtcgcc ttccagattg
    21241 tcgcaactga cgttaaacgg atatcccgcc gccacacaga acaaccagtc gagtgcctgc
    21301 ggcttcactt caacatcttc aaactggctt tgcgtttggg catcacgccc atccgggcaa
    21361 taccagtagc cgaaatcaac cagctcacgg cgcgcttttc cggcaataca ccagtgcgaa
    21421 atctcatgaa ttgcgctggc ataaaagccg tgggcaaaga caattcggtt atacggtact
    21481 tccgcatcag caggaagata gatcggttcg tcgtcgcctt taatcagacg ggtattaaat
    21541 tcatcggcaa agcagctatt aaaaatttca atcaactgct catagtggtg tgtactgttc
    21601 attagttcat ccccaaccag tggaggatct cctgtccgtg gctatcgtaa agtaatttgg
    21661 cactcatcac cgccgagacg ataacgatca tcgggcggat cagtttttgt cctttgctca
    21721 gcaccagtct tgaacccatg cgcgcgccga ggaactgccc caccagcatg acaaagcccg
    21781 tcgcccaaat cactttgccg ccgagaataa acagcagcag accgccaatg tttgacgttg
    21841 cgttgagtaa tttggcgtga gccgtggctt tggcgaggtt gaatccgcac agcgtaacga
    21901 aggccagcgc gtaaaacgat ccggcagccg ggccaaagaa tccgtcataa aaaccgacgc
    21961 agccaccggc aattaacgcg aagggtaaac cgtacatccg gcgctggcga tcttcttcac
    22021 ccagctttgg catcagcaag aaatagaggc cgatacaaat taccagaatg ggcaaaatct
    22081 gccgtaagac atcagcctga acgtattgca ccagcagtgc gccgctcatt gagccggcaa
    22141 aggtcatggc gatattgagt ttctgatcgc ttaaactaac cactttgcgg cgaataaagt
    22201 agatagtggc ggaaatagag ccgccgcagg cttgcagttt attggttgcc agcgcgttag
    22261 cgggagacat tcccgcagcc atcaatgccg gaatggtgag taacccaccg ccaccggcaa
    22321 tcgagtcgat aaatcccgcc agcatggcga caaaaaagag aactcccagc aacagcgggg
    22381 aaaccataaa caggctatta aacgtttcca ttagatcacg tgctcatcca gtagcgcctg
    22441 gcaggaaggc ggcaacggag gcggtgtctt cttctcaggc tttgttgttc ctggttttgg
    22501 aggtgcaaac cagctttgca gttctgcccc gcaaccatcg cctggtggcg gtaaaggttg
    22561 atcttcacac tccagactat cggcagggca acgtaatcgt acatgcatat gcgcgcgatg
    22621 ctggaaccag ggtcgcactt tgcgcaacca gtcgcgatcg gtgcccgcat caaggcaaag
    22681 ttgttgttta atcgccggat taacaaaaat gcgcgtgacg tctttgtcct gggcggcgag
    22741 tttgatcaag ctgaaaattt ctggcttcca cagcgtggag acaacgtgtt taccgtcgcg
    22801 ggaaactaag tccagtgctt gcgggcgcaa gagctgcgcg gaggtccagc gagttttcgg
    22861 cagttgcaga aagatatcga catccagtcc ggtctggtgg ctggcatgac cgccgttgaa
    22921 acgcccacca gcgggcatcc ccatatcgcc aatcagcacc gtacccatgc ccagattgct
    22981 cacctggcta ctcagacgct ggataaacat caccagatcc gggtgaccga aatagcgacg
    23041 ctgatcggta cgcatgacct gataatgttc ggactgtatc ggcaacgtgt cagcgccgac
    23101 aatacagcca ttagaaaaac tgcctatcga ttgtgcgcta cccggcacag gttgggttat
    23161 tttttgccac ggcgtcgctg ccaagctagc gctactggca agcagagcca gcagcgcaat
    23221 cgcggttttg ttcatttttt accagcgtgg aatatcagtc ttcacatcgg cattttgcgc
    23281 ccgctgccgt aacaggtgat ccattaaaac gatcgccagc atcgcttcag cgatcggcac
    23341 tgcacggatc ccgacacagg gatcgtgacg acctttggtg atcatctcaa cttcttcgcc
    23401 aaagcggtta atagtgcgcc ccggcacggt aatgctggag gtcggtttca gcgccatatg
    23461 agcaatgatt tgctgcccgc tgctgatacc gccgagaatg ccgcccgcat ggttgctctg
    23521 gaaaccgtct ttggtgattt cgtcgcggtt ctggctgccg cgcagcgcca ctacgtcaaa
    23581 gccgtcgcca atttccacgc ctttcaccgc gttgatgctc atcagcgcat gggcgatgtc
    23641 ggcatccagg cggtcaaata ccggctcgcc aagtccggcg gggacgccac tggcaacaac
    23701 ggtgactttc gcgccgatgg agtcgccctc ttttttcagc gcgcgcatca gttcatctaa
    23761 cgcgtcgatt ttgtccggat ccgggcagaa gaacggattt tgttcaacca gcgaccagtc
    23821 tttgatttcc agcggaatgt cgcccatctg ggtcaagcag ccgcggattt caataccaaa
    23881 tttctcggcg agatattttt tggcaatcgc ccctgccgcc acgcgcatgg cggtttcgcg
    23941 ggcggaagaa cgtccaccgc cgcgataatc gcgcagaccg tatttttgtt cgtaggtgta
    24001 atcagcatgg cctgggcgga aaacgtcttt aattgcgctg taatcctgag agcgctggtc
    24061 agtgttttcg atcaacaagc caatgctggt gccagtagta acgccttcaa aaacaccaga
    24121 gagaattttg acctgatccg gctcgcggcg ctgggtggta tagcgcgatg tcccagggcg
    24181 acgacggtcg aggtcatgtt gcaggtccgc ttccgtcagc agaatgcctg gcggaacacc
    24241 atcgacgatg cagccgagcg ccagcccatg cgattcgccg aaggtggtta cgcgaaagag
    24301 ttgtccaatt gtgtttccag ccatcacggc tccgttattg ttgtgtttgc gtgtttactt
    24361 aatctttata aatcgcgaaa tattcacggg ccgccagcag ctgctctttg gtgagcataa
    24421 acacaccatc gccgccgtta tcaaactcca gccaggtgaa cggaacatcc ggatattgtt
    24481 ccataagatg taccatgctg ttgccgactt cacaaatcaa cacgccatca tcagcaaggt
    24541 aatctgccgc gtttccaaga atgcgacgcg tcagtttaag gccgtcggtg ccagatgcca
    24601 ggcccagttc cggctcgtga cggtattcgt ttggcaggtc ggacatatct tccgcgtcga
    24661 catacggcgg gttagtgaca atcagatcgt actgcacttt cggcaagtcg cggaacagat
    24721 cggaacgaat cggaatgacg ttgtggatca gaccgtgttc ttcgatgttc tgttcagcaa
    24781 ccgccagcgc gtcgggagag atatccaccg cgtcgacttc tgcatccggg aaggcataag
    24841 cacaggcaat ggcgatgcag ccgctaccgg tacacatatc taaaatatgc tgcggttgtt
    24901 tgctgatgag tccggcaaat ttattgttga tcagttcacc aatcggcgag cgcggcacca
    24961 gcacgcgttc atcgacgtaa aattcatgac cgcagaacca ggctttgttg gtcaggtaag
    25021 ccaccggaat gcgctcgttg acgcggcgga tcacgcgttc aacaatacga tgtttttcgc
    25081 tggaggtcag acgcgcggtg cgcatatctt ccgggatatc cagcggcagg tagagcgatg
    25141 gtaacaccag ctgtacggct tcatcccacg ggttatcggt gccgtgaccg taccagatat
    25201 ttgccgcgct gaagcggctc actgaccagc gcaacatgtc ctgaatggtt tgcagctcat
    25261 ttactgcttc atcaacgaaa attttatcca cgtattcctc cagggcatga tcgcaataat
    25321 ttcggcggct agtttgccat gaagatgacg ataaatcagc attcacgcgc ggtgagtgag
    25381 gaaaaatacg tttaaaacga tcgattgtgc tacgagtcgg gtaaactgta ggaaaattag
    25441 aaatagagac agataaatga aaaagaaaac aacacttagc gaggaggacc aggctctgtt
    25501 tcgccagttg atggcgggga ctcgcaagat taagcaggac acgattgtcc accgaccgca
    25561 gcgtaaaaaa atcagcgaag tgccggtgaa acgcttgatc caggagcagg ctgatgccag
    25621 ccattatttc tccgatgagt ttcagccgtt attaaatacc gaaggtccgg tgaaatatgt
    25681 tcgcccggat gtcagccatt tcgaggcgaa gaaactgcgc cgcggcgatt attcaccgga
    25741 attgtttttg gatttacacg gtctgacgca gctgcaggcc aagcaggaac tgggcgcgtt
    25801 gattgccgcc tgtcgccgcg aacatgtgtt ttgtgcctgc gtgatgcatg ggcacgggaa
    25861 gcatattttg aagcaacaaa caccgctgtg gctggcacaa catccgcatg tgatggcatt
    25921 tcaccaggca ccgaaagagt acggcggtga tgcggctttg ttggtgttga ttgaagtgga
    25981 agagtggttg ccgccggagt tgccctgagg agttgagcgt gttgtgccag gtgagaaaag
    26041 gtgcgctaat acatattcag tatgtaagtg aatcggcagg tagaatctat gggctgtcga
    26101 gatgtcgtgt ccacgcgtag cttcatatca tgcagttgcc tggacgtaat cggttgcggc
    26161 tcaggcgtca ccgtcacttt ggcattatca cagccggaag tcgagaaggt catctgctgt
    26221 gcgataaaac ggcagtagac accacgctca tcaaaattat tcccgttaca cagtttgcca
    26281 ttttccatca ggaaagtggg cagtgtttgc tcaataacac cacctgttga ctgcaacctg
    26341 acgactttgt tatgtacaac ataattttca ttccaggaaa catcatacgg tgccaggggc
    26401 accgccggac atgaagaact caccttcgtt gggccaatat agtcaggaaa atcatcatca
    26461 tacgttttag cgaagggatc tctactctta acaaacgacg acacaatcca cggacaacca
    26521 tgtaaattcc catcgtaata aacaaacatc tttaattcat tacatgtcca tcccgttttg
    26581 gtctggctat catactgctc taatccagga caggctgaca tggataccct gctgtccgaa
    26641 attttcgaca tagatggttg agtagaacta tcgccagtcc acgaaactaa atccggctgt
    26701 gaattgggca tgaatgtagc cttaaatata gcgtaattaa ctgaatctgg cgtcgctata
    26761 atcagatgaa actcaaactc
//
LOCUS       DADMJB010000041        25805 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.041, whole genome shotgun sequence.
ACCESSION   DADMJB010000041 DADMJB010000000
VERSION     DADMJB010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25805)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25805)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25805
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.041"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(82..2301)
                     /locus_tag="JN078_001549"
     CDS             complement(82..2301)
                     /locus_tag="JN078_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgiQ family radical SAM protein"
                     /protein_id="HAY9040795.1"
                     /translation="MSSISLIQPDRDLFSWPQYWAACFGPAPFLPMSSEEMDQLGWDS
                     CDIILVTGDAYVDHPSFGMAICGRMLEAQGFRVGIIAQPDWSSKDDFMRLGKPNLFFG
                     VTAGNMDSMINRYTADRRLRHDDAYTPDNVAGKRPDRATLVYTQRCKEAWKDVPVILG
                     GIEASLRRTAHYDYWSDTVRRSVLVDSKADMLMFGNGERPLVEVAHRLAMGEPISEIR
                     DVRNTAIIVKEALPGWSGVDSTRLDTPGKIDPIPHPYGEDLPCADNKPVAPKKQEAKA
                     VTVQPPRPKPWEKTYVLLPSFEKVKGDKVLYAHASRILHHETNPGCARALMQKHGDRY
                     VWINPPAIPLSTEEMDSVFALPYKRVLHPAYGNVRIPAYEMIRFSVNIMRGCFGGCSF
                     CSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANMYMLRCKSPRAE
                     QTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYDIAVEDPRYI
                     KELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGKEQYLIPY
                     FISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKKPLAKIGYK
                     SEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLVPAPTIE
                     EMREARRQNRNTRPALTKHTPMATQRQTPATAKKASSTQSRPVNAGAKKRPKAAVGR"
     gene            complement(2412..3824)
                     /gene="ftsP"
                     /locus_tag="JN078_001550"
     CDS             complement(2412..3824)
                     /gene="ftsP"
                     /locus_tag="JN078_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsP"
                     /protein_id="HAY9040796.1"
                     /translation="MSLSRRQFIQASGIALCAGAVPLKASAAGQQQPLPVPPLLESRR
                     GQPLFMTVQRAHWSFTPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMT
                     VAGLQVPGPLMGGPARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGM
                     WLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQ
                     SPYVEVSRGWVRLRLLNASNSRRYQLQMSDSRPLHVISGDQGFLPAPVSVKQLSLAPG
                     ERREILVDMSNGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTD
                     SLPMRLLPTEIMAGSPIRSRDISLGDDPGINGQLWDVNRIDVTAQQGTWERWTVRADE
                     PQAFHIEGVMFQIRNVNGAMPFPEDRGWKDTVWVDGQVELLVYFGQPSWAHFPFYFNS
                     QTLEMADRGSIGQLLVNPVP"
     gene            complement(3899..4636)
                     /gene="plsC"
                     /locus_tag="JN078_001551"
                     /gene_synonym="parF"
     CDS             complement(3899..4636)
                     /gene="plsC"
                     /locus_tag="JN078_001551"
                     /gene_synonym="parF"
                     /EC_number="2.3.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acylglycerol-3-phosphate O-acyltransferase"
                     /protein_id="HAY9040797.1"
                     /translation="MLYIFRLIITVIYSILVCVFGSIYCLFSPRNPKHVATFGHMFGR
                     LAPLFGLKVECRKPADAESYGNAIYIANHQNNYDMVTASNIVQPPTVTVGKKSLLWIP
                     FFGQLYWLTGNLLIDRNNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGRGLLPFK
                     TGAFHAAIAAGVPIIPVCVSTTSNKINLNRLHNGLVIVEMLPPIDVSQYGKDQVRELA
                     AHCRSIMEQKIAELDKEVAEREAAGKV"
     gene            complement(4869..7127)
                     /gene="parC"
                     /locus_tag="JN078_001552"
     CDS             complement(4869..7127)
                     /gene="parC"
                     /locus_tag="JN078_001552"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001639862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HAY9040798.1"
                     /translation="MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRR
                     IVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG
                     QGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPAR
                     LPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTE
                     AEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRN
                     KKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL
                     DGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEI
                     IRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI
                     LVSERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG
                     WVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ
                     GEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL
                     PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARG
                     EDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID
                     SPRRASSGDSEE"
     gene            complement(7673..8155)
                     /locus_tag="JN078_001553"
     CDS             complement(7673..8155)
                     /locus_tag="JN078_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HAY9040799.1"
                     /translation="MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKET
                     GLSPVNQSQTFGVAWDDPATTAPKAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVA
                     RHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGMTEQRLETDVYVPLA
                     "
     gene            complement(8208..8600)
                     /gene="ygiW"
                     /locus_tag="JN078_001554"
     CDS             complement(8208..8600)
                     /gene="ygiW"
                     /locus_tag="JN078_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OB fold stress tolerance protein YgiW"
                     /protein_id="HAY9040800.1"
                     /translation="MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNG
                     SVTTVESAKSRRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPK
                     DTVEIQGEVDKDWNSVEIDVKQIRKVNP"
     gene            8752..9411
                     /gene="qseB"
                     /locus_tag="JN078_001555"
     CDS             8752..9411
                     /gene="qseB"
                     /locus_tag="JN078_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator QseB"
                     /protein_id="HAY9040801.1"
                     /translation="MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAP
                     YDAVILDLTLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKP
                     FALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLASEPLTLKPKEFALLEL
                     LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE
                     K"
     gene            9408..10757
                     /gene="qseC"
                     /locus_tag="JN078_001556"
     CDS             9408..10757
                     /gene="qseC"
                     /locus_tag="JN078_001556"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     QseC"
                     /protein_id="HAY9040802.1"
                     /translation="MKFTQRLSLRVRLTLIFLILASVTWLLSSFVAWKQTTDNVDELF
                     DTQLMLFAKRLSTLDLNEINAADRMAQTPNKLKHGHVDDDALTFAIFTHDGRMVLNDS
                     DNGEDIPYSYQREGFADGQLVGEDDPWRFVWMTSPDGKYRIVVGQEWEYREDMALAIV
                     AGQLIPWLVALPIMLIIMMVLLGRELAPLNKLALALRMRDPDSEKPLNATGVPSEVRP
                     LVESLNQLFARTHAMMVRERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKAL
                     LQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKID
                     VRLTLNVQGIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNADNFIVRDNGPGV
                     TPEALARIGERFYRPSGQTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSW"
     gene            10867..11448
                     /gene="mdaB"
                     /locus_tag="JN078_001557"
     CDS             10867..11448
                     /gene="mdaB"
                     /locus_tag="JN078_001557"
                     /EC_number="1.6.5.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH:quinone oxidoreductase MdaB"
                     /protein_id="HAY9040803.1"
                     /translation="MSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRA
                     DSDYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRK
                     DPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGM
                     EPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG"
     gene            11479..11793
                     /locus_tag="JN078_001558"
     CDS             11479..11793
                     /locus_tag="JN078_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HAY9040804.1"
                     /translation="MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMV
                     DCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVLEMNIRILQP
                     GI"
     gene            complement(11841..13733)
                     /gene="parE"
                     /locus_tag="JN078_001559"
     CDS             complement(11841..13733)
                     /gene="parE"
                     /locus_tag="JN078_001559"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HAY9040805.1"
                     /translation="MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSV
                     DEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN
                     KNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRN
                     TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDG
                     LNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG
                     GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK
                     ERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLT
                     SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV
                     SSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVK
                     HFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGL
                     GEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD
                     MAEIEV"
     gene            complement(13762..14343)
                     /gene="yqiA"
                     /locus_tag="JN078_001560"
     CDS             complement(13762..14343)
                     /gene="yqiA"
                     /locus_tag="JN078_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase YqiA"
                     /protein_id="HAY9040806.1"
                     /translation="MSTLLYLHGFNSSPRSAKASLLKNWLAEHHPDVEMIIPQLPPYP
                     SDAAELLESIVLEHGGDSLGIVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDY
                     LGQNENPYTGQQYVLESRHIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYA
                     SCRQTVIEGGNHAFTGFEDYFNPIVDFLGLHHL"
     gene            complement(14343..15170)
                     /gene="cpdA"
                     /locus_tag="JN078_001561"
     CDS             complement(14343..15170)
                     /gene="cpdA"
                     /locus_tag="JN078_001561"
                     /EC_number="3.1.4.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-AMP phosphodiesterase"
                     /protein_id="HAY9040807.1"
                     /translation="MESLLTLPLAGEARVRILQITDTHLFAQKHEALLGVNTWESYQA
                     VLEAIRPHQHEFDLIVATGDLAQDQSSAAYQHFAEGIASFRAPCVWLPGNHDFQPAMY
                     SALQDAGISPAKRVFIGEQWQILLLDSQVFGVPHGELSEFQLEWLERKLADAPERHTL
                     LLLHHHPLPAGCSWLDQHSLRNAGELDTVLAKFPHVKYLLCGHIHQELDLDWNGRRLL
                     ATPSTCVQFKPHCSNFTLDTIAPGWRTLELHADGTLTTEVHRLADTRFQPDTASEGY"
     gene            complement(15195..15617)
                     /locus_tag="JN078_001562"
     CDS             complement(15195..15617)
                     /locus_tag="JN078_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1249 family protein"
                     /protein_id="HAY9040808.1"
                     /translation="MKRYTPDFPEMMRLCEMNFSQLRRLLPRNDAPGETVSYQVANAQ
                     YRLTTVESTRYTTLVTIEQTAPAISYWSLPSMTVRLYHDAMVAEVCSSQQIFRFKARY
                     DYPNKKLHQRDEKHQINQFLADWLRYCLAHGAMAIPVY"
     gene            complement(15618..16247)
                     /gene="nudF"
                     /locus_tag="JN078_001563"
     CDS             complement(15618..16247)
                     /gene="nudF"
                     /locus_tag="JN078_001563"
                     /EC_number="3.6.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribose diphosphatase"
                     /protein_id="HAY9040809.1"
                     /translation="MLKPDNLPVTFGKNDVEIIARETLYRGFFSLDLYRFRHSLFNGQ
                     MSHEVRREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEG
                     ESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLA
                     DENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQLHHQALKNEWA"
     gene            16452..17933
                     /gene="tolC"
                     /locus_tag="JN078_001564"
     CDS             16452..17933
                     /gene="tolC"
                     /locus_tag="JN078_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417507.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane channel protein TolC"
                     /protein_id="HAY9040810.1"
                     /translation="MKKLLPILIGLSLSGFSSLSQAENLMQVYQQARLSNPELRKSAA
                     DRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGINSNATSASLQLTQSIFDMSK
                     WRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLD
                     QTTQRFNVGLVAITDVQNARAQYDTVLANEVTARNNLDNAVEQLRQITGNYYPELAAL
                     NVENFKTDKPQPVNALLKEAEKRNLSLLQARLSQDLAREQIRQAQDGHLPTLDLTAST
                     GISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGA
                     SEQLESAHRSIVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIV
                     DVLDATTTLYNAKQELANARYNYLINQLNIKSALGTLNEQDLLALNNALSKPVSTNPE
                     NVAPQTPEQNAIADGYAPDSPAPVVQQTSARTTTSNGHNPFRN"
     gene            18081..18752
                     /locus_tag="JN078_001565"
     CDS             18081..18752
                     /locus_tag="JN078_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417509.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1190 family protein"
                     /protein_id="HAY9040811.1"
                     /translation="MKRTKSIRHASFRKNWSARHLTPVALAVATVFMLASCEKSDETV
                     SLYQNADDCSAANPGKSAECTTAYNNALKEAERTAPKYATREDCVAEFGEGQCQQAPA
                     QAGMAPENQAQAQQSSGSFWMPLMAGYMMGRLMGGGAGFAQQPLFSSKNPASPAYGKY
                     TDATGKNYGAAQPGRTMTVPKTAMAPKPATTTTVTRGGFGESVAKQSTMQRSATGTSS
                     RSMGG"
     gene            18758..19918
                     /locus_tag="JN078_001566"
     CDS             18758..19918
                     /locus_tag="JN078_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HAY9040812.1"
                     /translation="MERVSITERPDWREKAHEYGFNFHTMYGEPYWCEDAYYKLPLAQ
                     VEKLEEVTAELHQMCLKVVEKVIASDELMTKFRIPKHTWSFVRQSWLTHQPSLYSRLD
                     LAWDGTGEPKLLENNADTPTSLYEAAFFQWIWLEDQLNAGNLPEGSDQFNSLQEKLID
                     RFVELREQYGFQLLHLTCCRDTVEDRGTIQYLQDCATEAEIATEFLYIDDIGLGEKGQ
                     FTDLQDQVISNLFKLYPWEFMLREMFSTKLEDAGVRWLEPAWKSIISNKALLPLLWEM
                     FPNHPNLLPAYFAEDDHPQMEKYVVKPIFSREGANVSIIENGKTIEAAEGPYGEEGMI
                     VQQFHPLPKFGDSYMLIGSWLVNDQPAGIGIREDRALITQDMSRFYPHIFVE"
     gene            complement(19956..20771)
                     /gene="ygiD"
                     /locus_tag="JN078_001567"
     CDS             complement(19956..20771)
                     /gene="ygiD"
                     /locus_tag="JN078_001567"
                     /EC_number="1.13.11.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311954.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,5-DOPA dioxygenase extradiol"
                     /protein_id="HAY9040813.1"
                     /translation="MTPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMT
                     LPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYPAPGSPVLAQHLV
                     ELLAPVPVTLDKEARGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLA
                     ALRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWAMSFNEYVKANLTWQGAVEQHPLVN
                     YLDHEGGALSNPTPEHYLPLLYVLGAWDGQEPITIPVDGIEMGSLSMLSVQIG"
     gene            20887..21648
                     /gene="zupT"
                     /locus_tag="JN078_001568"
     CDS             20887..21648
                     /gene="zupT"
                     /locus_tag="JN078_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HAY9040814.1"
                     /translation="MSVPLILTILAGAATFIGAFLGVLGQKPSNRLLAFSLGFAAGIM
                     LLISLMEMLPAALAAEGISPVLGYGMFIFGLLGYFGLDRMLPHAHPQDLMQKSVQPLP
                     KSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPV
                     YAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAVAGIMVALSVDELMP
                     LAKEIDPNNNPSYGVLCGMSVMGFSLVLLQTAGIG"
     gene            complement(21706..21876)
                     /locus_tag="JN078_001569"
     CDS             complement(21706..21876)
                     /locus_tag="JN078_001569"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040815.1"
                     /translation="MFIAWYWIVLIALVVVGYFLHLKRYCRAFRQDRDALLEARNKYL
                     NSTREETAEKVE"
     gene            complement(22136..22789)
                     /gene="ribB"
                     /locus_tag="JN078_001570"
     CDS             complement(22136..22789)
                     /gene="ribB"
                     /locus_tag="JN078_001570"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001077009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HAY9040816.1"
                     /translation="MNQTLLSSFGTPFERVENALAALREGRGVMVLDDEDRENEGDMI
                     FPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTGFTVTIEAA
                     EGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDL
                     MTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHERKAS"
     regulatory      complement(22893..23041)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            23103..23453
                     /gene="ubiK"
                     /locus_tag="JN078_001571"
     CDS             23103..23453
                     /gene="ubiK"
                     /locus_tag="JN078_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis accessory factor UbiK"
                     /protein_id="HAY9040817.1"
                     /translation="MTYPYRTTMVLNTYQYRETTMIDPKKIEQIARQVHESMPKGIRE
                     FGEDVEKKIRQTLQAQLTRLDLVSREEFDVQTQVLLRTREKLALLEQRMSELENRSTE
                     IKKQPDPETLPPTL"
     gene            23737..24288
                     /locus_tag="JN078_001572"
     CDS             23737..24288
                     /locus_tag="JN078_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial-like protein"
                     /protein_id="HAY9040818.1"
                     /translation="MSAFKKSLLVAGVAMILSNNVFADEGHGIVKFKGEVISAPCSIK
                     PGDEDLTVNLGEVADTVLKSDQKSLAEPFTIHLQDCMLSQGGTTYSKAKVTFTTANTM
                     TGQTDLLKNTKETEIGGATGVGVRILNSQSGEVTLGTPVVITFNNTNSYQELNFKVRM
                     ESPGKDATPGNVYAQADYKIAYE"
     gene            24348..>25805
                     /locus_tag="JN078_001573"
     CDS             24348..>25805
                     /locus_tag="JN078_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001480735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
                     /protein_id="HAY9040819.1"
                     /translation="MYKKLKLTTISELIKNIYCSLSVLIIGCASAYAVEFNKDLIEAE
                     DRENVNLSQFETDGQLPVGKYSLNAIINNKRTPIHLDLQWVLIDNQTAVCLTPEQLTL
                     LGFTDEIIEEAQQNLIDGCYPIEKEKQITTYLDKGKMQLSISAPQAWLKYKDANWTPP
                     ELWDHGIAGAFLDYNLYASHYAPHQGDNSQNISSYGQAGVNLGAWRLRTDYQYDQSFN
                     NGKSQANNLDFPRIYLFRPIPAINAKLTIGQYDTESSIFDSFHFSGVSLKSDENMLPP
                     DLRGYAPQITGVAQTNAKVTVSQNNRIIYQENVPPGPFAITNLFNTLQGQLDVKVEEE
                     DGQVTQWQVASNSIPYLTRKGQIRYTTAMGKPTSVGGDSLQQPFFWTGEFSWGWLNNV
                     SLHGGSVLTNRDYQSLAAGVGFNLNSLGSLSFDVTRSDTQLHNQDKETGYSYRANYSK
                     RFESTGSQLTFAGYRFSDKNFVTMNEYINDTNHYTN"
BASE COUNT         6458 a         6802 c         6372 g         6173 t
ORIGIN      
        1 tcggcatata aataaatgcc taatgagata gattctgatg taatatcccc ggtagcaatt
       61 ctgctaccgg gaacagcgaa tttaacgtcc aaccgccgct ttaggccgtt tcttcgcacc
      121 agcattcacc ggacgagatt gcgtagacga cgcttttttt gccgtagcag gcgtctgacg
      181 ctgggtcgcc atcggcgtat gtttcgtcaa cgccggacgg gtattgcggt tctggcgacg
      241 agcttcacgc atctcttcaa tggttggcgc aggcactaag caatcgcgac ggctaccaat
      301 cagatgcttt ttacccatcg cttccagcgc ctggcggatt aacggccagt ttgccggatc
      361 gtggtaacgc aacaacgctt tatgcaaacg acgctgcttg tcgcccttcg gtacgaagac
      421 gtcttcactc ttataaccaa tcttcgccag cggttttttc ccggtgtaat acatggtggt
      481 tgagttcgcc agcggcgatg ggtagaagtt ctgtacctgg tcgagacgga aacgatgctt
      541 tttcagccac agcgccagat tcaccatatc ttcatcacgc gtaccggggt gcgcggagat
      601 gaaatagggg atcagatact gctctttacc tgcctgtttt gagtaagtat cgaacagctc
      661 tttaaagcgg tcatagctgc ccatgcccgg cttcatcatc ttcgataacg gcccttcttc
      721 ggtatgttcc ggggcaatct tcagataacc gccgacgtga tgggtcgcca gttctttgat
      781 atagcgcgga tcttccacgg cgatgtcata acgcacacca gaggcaatca ggatcttttt
      841 aatgcctttc agatcacgcg cacggcgata gaggttgatc gttggttcgt ggttcgtgtc
      901 catgtgcgga caaatatccg gataaacgca cgacaaacgg cggcaggttt gctcagcgcg
      961 tggcgatttg cagcgcaaca tatacatgtt ggcagttggc ccaccgagat cggaaattac
     1021 gcccgtaaaa cctggaacgg tgtcgcggat cgcttcgatc tcattaatga tcgaatcttc
     1081 ggaacggctc tgaataatgc gcccttcgtg ctcggtgata gaacagaaag agcagccgcc
     1141 aaagcagcca cgcataatgt tgaccgaaaa acggatcatt tcgtaagccg gaatacggac
     1201 attgccatag gccggatgta gcacgcgctt gtatggcagc gcaaaaacgc tgtccatctc
     1261 ttcggtagaa agcggaatag caggcgggtt gatccacaca tagcggtcgc cgtgtttttg
     1321 catcaatgcg cgggcacagc ctgggttggt ttcgtggtgc agaatacgcg aagcatgggc
     1381 gtacagcact ttatcgccct tcactttctc gaaagaaggc agcaacacgt aggttttttc
     1441 ccacggtttc gggcgcggtg gctgcacggt tacggctttg gcttcctgct ttttcggtgc
     1501 caccggtttg ttatccgcgc acggcaaatc ttcaccatac ggatgcggga ttgggtcgat
     1561 ttttccaggg gtatcaagac gggtggaatc cacgccgctc cagccaggca gggcctcttt
     1621 cacgataatc gcggtattac gcacatcgcg gatttcacta atcggctcgc ccatcgccag
     1681 acggtgcgcc acctccacca gcggacgctc accgttacca aacatcagca tgtcggcttt
     1741 cgaatccacc agcacggaac ggcgcacggt atcggaccag taatcataat gtgcggtacg
     1801 acgcagacta gcctcaatac cgccgaggat caccggtaca tctttccacg cctctttaca
     1861 acgctgggta taaaccagtg tggcgcgatc cgggcgctta cccgcgacgt tatccggcgt
     1921 gtaggcatcg tcatgacgta aacggcgatc ggcggtataa cggttgatca tcgaatccat
     1981 gttgccagca gtaacaccga aaaacagatt cggtttaccc agacgcataa agtcgtcttt
     2041 gctgctccag tccggctggg cgatgatccc gacgcgaaag ccctgcgctt ccagcatacg
     2101 accgcaaatc gccatcccga agcttgggtg atcgacatac gcgtcgccag taaccaaaat
     2161 gatgtcgcag ctatcccagc caagttgatc catctcttca ctagacatcg gcaaaaacgg
     2221 tgccggtcca aaacaggcgg cccagtactg cggccaggag aacaggtcgc gatccggttg
     2281 gatcagggag atagagctca ttttgcttcc agaaatgata aaaaaataat caaaggccgg
     2341 ggattataag ccggaacgaa agagaaatcg aaaagtattc catactcgcc ctcctcgggc
     2401 gagtatgaag attacggtac cggattgact aacagttgcc caatcgagcc acggtccgcc
     2461 atttccagcg tctgactgtt gaagtagaac gggaagtgcg cccaggaagg ctgaccgaaa
     2521 taaacaagca gctccacttg tccgtcaacc caaacggtat ctttccagcc tctgtcttcc
     2581 gggaacggca tcgcaccatt cacgttacgg atctggaaca tcacgccttc aatatggaac
     2641 gcttgcggct cgtccgcgcg taccgtccag cgttcccacg ttccttgctg cgcggtgaca
     2701 tcaatacggt tgacgtccca cagttgtcca ttaatacccg ggtcatcacc cagactgata
     2761 tcgcgactgc gaatcggcga accggccatg atttcagttg gcagcaagcg catcggaaga
     2821 ctgtctgtga ccagcggcag aaggccggtt gggcgcagcg ttagcaccag ggtagaaacc
     2881 agaatgctgg atggctcaaa gaagccacga atacgatcaa caatgctcgc cgcttcgcca
     2941 caggtgatcg acacttcatc accgttgctc atatccacca gaatctcgcg gcgctcgccc
     3001 ggtgccaacg aaagttgctt caccgataca ggagcaggca ggaatccctg atcgccagaa
     3061 atcacatgta acgggcgact atcgctcatc tgtagttgat agcgacgaga gttcgacgcg
     3121 ttcagcagtc gcaagcgcac ccagccacgc gagacttcaa cgtacgggct ttgtacaccg
     3181 ttaaccagca gcgtatcacc aacaaagccg ccgcttcccg gttcgttgta ttctggcgta
     3241 ccaaagttat ccagccgttt atcctggata atgaccggaa aatcatccac accataatgg
     3301 ttggggatag gcagcgactt gctgacttca tcttccacca gccacattcc ggcaaggccg
     3361 ttatagacct gctgagccgt gcggttggga gtattggcgt gataccacag agtagctgcg
     3421 ttctggcgaa tgggcagtac gggtgcccag tcagcgtttg gcgacatcat ccgtgccgga
     3481 ccgcccatca gcgggcctgg tacctgtagc ccggccaccg tcattgagac attttctgtc
     3541 aggcggttgc tgtaaataag cttaacatcg tcgcccttcc agacgcggat agtcggcccc
     3601 aggtaacgac cattgattcc ccagaccgac gcgcgtgtcc ctggcgtaaa tgaccagtgc
     3661 gcacgttgta cagtcataaa cagcggttgc ccacggcgag attcaagtag cggcggaacg
     3721 ggtagcggtt gctgttgccc ggctgcgctg gccttcaggg gaacagcgcc ggcacaaagt
     3781 gcaatccccg atgcctgaat gaactgacgc cgactgagtg acatatttgc tccatgtaaa
     3841 actggctaaa gtaataccgt gcaggaaagt gttccccgca aaaatacaga ttgccgactt
     3901 aaacttttcc ggcggcttcg cgttctgcga cttctttatc gagctcggcg attttttgtt
     3961 ccattatcga acgacaatgg gcagccagct cacgaacctg atctttgcca tactgactga
     4021 cgtcaattgg cggcagcatt tcgacaatca ccagaccgtt gtgcagtcga ttaagattaa
     4081 tcttattcga agttgtagag acgcacacgg gaataatcgg gacgcccgcc gcaattgccg
     4141 cgtgaaatgc tccagtcttg aacggtagca ggccgcgacc acggctgcgg gttccttccg
     4201 ggaacatcca gatggaaata cggcgttttt tgaaatgatt cacgacttcc gcaatggtgc
     4261 cgtgagcttt agtgcgattg tttctgtcga tcaataagtt gccggttaac cagtacaact
     4321 gcccgaagaa ggggatccac agcaagctct ttttacctac cgtcaccgtc ggcggttgca
     4381 caatgttcga tgctgtcacc atgtcatagt tgttctggtg gttagcgata tagatagcat
     4441 tgccgtagct ttcagcatct gcaggtttgc ggcactcaac tttcaggccg aacagcggcg
     4501 caagacggcc aaacatatgc ccaaaggtgg ccacatgttt cgggttacgc gggctgaaaa
     4561 ggcagtaaat ggagccgaat acacagacta agatgctgta aatcacggta ataataagac
     4621 gaaagatata tagcataaca acctctgaag gtctgagaga ctggcattgt acgtcacctg
     4681 aaatcaggtt agggcattgt taaaagccgc tctctggaaa agcgtattgt taatcgcaac
     4741 gcatgaataa acaacggttt caagggaatt tttatcgttt ccgggggttg aatacgctgc
     4801 cggatgacga cttaacgttt catccggcgt tccttgcaag cgggaggaaa caggccctcc
     4861 ccggcatatt actcttcgct atcaccgctg ctggcacggc gaggagagtc gatctcaaca
     4921 cgatcgatac gctgcaaacc gcgcatcaac gtaccgcggc gtccacgttc gccagtgact
     4981 ttctgtaact cttccgggcg cagtttaatt ttgcgtttcc caacatgaat ggtcagcgtg
     5041 ctttgcggcg gcagaacgta caattgcgcc agaccatctt ctccacgcgc ggcttctgcc
     5101 gatggaatgt tgataatctt gttgcctttg cccttcgaca gctgcggcag atcgcttacc
     5161 gggaacatca acatacggcc tgcctgagtg attgccagca gcatatcgga agcatcttca
     5221 atcaccaccg gcggcataac atgggcattt tccggtaagg tgatcaaagc cttacctgca
     5281 cggttacgcg ccaccagatc gttaaaggtg cagacgaaac cgtaacccgc atcggaagcc
     5341 atcagcagtt tctgatcgtc gctttccatc agcatatggt caacggtcgc cccaggcggc
     5401 aacgttaatt tgccggtgag tggttcgccc tgaccacgcg ccgacggcag cgtaatcggg
     5461 tcgatggcat agctacgacc ggtggaatca acaaacacta ccggttggtt gctcttacct
     5521 ttcaccgccg ctttgaagct atcacccgct ttataattca ggcccggcgc gtcgatatca
     5581 tggcctttag cgctgcgtac ccagcccatc tgcgacagca caatggtgac aggttcagac
     5641 ggcagcatgt cgtgctcgct catcgctttc gcttcttcgc gttcctgcaa cggcgaacga
     5701 cgatcgtcac cgtaggcttg cgcgtctgcc tgcagttctt tcttcagcag gttattcatt
     5761 ttacgctcgg aaaccaaaat gccctgcaac tggtcgcgct ctttttccag ctcactctgc
     5821 tcaccgcgaa tcttcatctc ttccagtttg gcaagatgac gcagtttcag ttcgaggatc
     5881 gcttccgcct gggtttccgt aaggccaaac cgcgacatca gcgccggttt cggttcatct
     5941 tcgttacgaa tgatctcaat cacttcgtcg atgttgagaa acgccaccag caaaccttcc
     6001 aggatatgca ggcgcttgag gactttctcc agacgatagt tcagtcggcg gcgcacggta
     6061 tcgcgacgga acaccagcca ttcggagagg atttccagca ggtttttcac cgccggacga
     6121 ccatccagac cgatcatatt gaggttaatg cgatagctct tttccagatc ggtggtagcg
     6181 aagaggtggt tcatcacctg atccatatcc acgcggttgg aacgcggcac aatcaccaga
     6241 cgggtcgggt tctcgtggtc agattcatcg cgcagatcgt caaccatcgg cagctttttg
     6301 ttgcgcattt gcgcagcaat ttgctccagt acgcgcgcac ctgaaacctg atgcggcaat
     6361 gcgctgataa ccaccgcgcc atcttctttc ttccacaccg cgcgcatacg cactgaacca
     6421 cgtccgttct cgtagatttt acggatctcg gcgcgcgaag tgataatttc cgcttcagtc
     6481 ggataatccg gcccctgcac gatatccagc agctgatcga gcgtggtttt cggctggtcg
     6541 attaatgcga ttgccgcctg agctacttca cgcaggttat gcggtggaat atcggtcgcc
     6601 atgccgacgg caataccggt ggtgccgtta agcaaaatgt ttggcagacg ggcaggcagc
     6661 attttcggct cctgcaaagt gccgtcgaag tttggcaccc agtcagccgt cccctgcccc
     6721 agctcgctca atagcagctc ggaatatttc gacaaccggg attcggtgta acgcattgcc
     6781 gcgaacgatt tcggatcgtc cggcgcgccc cagttcccct gaccatcaac cagcggataa
     6841 cggtaagaga acggctgcgc catcaggacc atcgcttcat aacaggcgct atcgccgtgc
     6901 ggatggtatt tacccagtac gtcaccgacg gtacgggccg attttttaaa tttggcgctg
     6961 gcattcaggc ccagttcaga catcgcatac acaatgcggc gctgaacagg tttaagacca
     7021 tcgccaataa acggcaacgc acggtccatg atcacgtaca tggagtagtt taagtaggcg
     7081 ttttccgtaa attcatgtag cgcaaggcgc tctgccatat cgctcattaa ttctgattcc
     7141 tcaacttatt cgccagcctt caaaggggca atattgccgg agatactaca ttatctgccg
     7201 cgtcgagtca caggagatca gcgtgaatag cgccgccgga cgtgctccga cggcgataaa
     7261 ggcatcaatg tgccttgata tacaactctt tgctgtagac ttgatcggca tagagggcag
     7321 cacaaggttg cgcccatgcc acaccactcg gcatgggggt ccgctccggg cgattcgaga
     7381 agttgaggtt atgcgagtcc agggaagcct aaagcatcaa agtagtcgac tgtaagtata
     7441 cggttcagcc cagtttagct gtgtctccac cagtgccccg cgcctcctgc cataagtgcg
     7501 gcttgctcat ggataccccc gagacggctt acggcgcacc ggataataaa tttcgcgtat
     7561 acatggtatt ccttaccgga gaaattataa gcccaacaac aatacgcctg tggcattgtt
     7621 cgctcaaact tatcgcgagt gatttggctc acactccggt aaagattccc catcacgcta
     7681 acggcacata aacatccgtt tccagtcgct gttctgtcat accttcggca agattggtgt
     7741 agtgaaacag aatcggtgct ttacgcattt tctcgccgct tgcaggcagc cagtggcgaa
     7801 tgatgcccca taccgtgtgt gaaatatcgt ccagctcgcc aacgtggcgg gccacggcat
     7861 aacgtccacc ggtaagttca ccattgctca caccataacg attatcggga atcggttcgc
     7921 taacgctgcc gcagatatca aagcgaaacg ctttcggtgc ggtggtggca gggtcgtccc
     7981 aggcgacgcc aaaagtctgg ctttggttaa caggagaaag ccccgtctct ttacgccaca
     8041 tgataaattt cgccacactg tagttgagca actcagggct acagcggtgc ggcaacatcg
     8101 ccacagggat tgatgggaaa tcgataatgt ttacatccag tgtcaggttt gtcattttgc
     8161 ctccctgcga aattattccc gggaacgcgt cccgggagcg gtaacaatta cggatttact
     8221 ttgcggatct gtttgacgtc aatttcaaca gaattccagt ctttatcgac ttccccctga
     8281 atctcaaccg tatctttcgg cgtcaccgtc acaccgttcc agcgtttgtg gtcgatatca
     8341 acattgatag taccgctggc atctttaaac acgtagagat cgtcagagat gcgttcaacg
     8401 atattgccgc gcagggttac ccaggtgtcg tcacgccggg attttgcgct ttctacagtc
     8461 gttacgctgc cgttcggccc ctggaatcct ccggcctgac tttgcgttgc cgatgggcca
     8521 gaaaaaccgc cctgctctgc tgccatcacc ggtgcactgc acagggccat tactgcgatt
     8581 actgctgcga attttttcat gtttattact ccctttaatg tctgtttccg agcatttaac
     8641 aagatagtcc ttaacaactt cttaagggaa aaaaataaaa tttaatgctg tacagagcgc
     8701 gttacaacac ggtttactgg cagcaaatac ggttatcgca gggatgaaaa aatgcgaatt
     8761 ttactgatag aagatgacat gctgattggc gacggcatca aaactggcct tagtaaaatg
     8821 ggttttagtg tcgactggtt tacacaaggt cgtcagggaa aagaggcgct ttatagcgca
     8881 ccttatgatg cggtgatcct ggatttaacc ttaccaggca tggatggtcg cgatattttg
     8941 cgcgaatggc gagagaaagg tcagcgtgag ccggtactga tcctgaccgc gcgtgatgcg
     9001 ttagcggaac gtgtagaagg gctgcgtctg ggagctgacg attatctgtg taaacctttt
     9061 gcgttgatag aagtcgccgc caggctggag gctctgatgc gccgaaccaa cggccaggcc
     9121 agcaacgagc tgcgccacgg taacgtcatg ctcgaccccg gcaaacgtat cgccacgctg
     9181 gctagcgaac ccttaacact gaaaccaaaa gaatttgccc tgctggaatt actgatgcgt
     9241 aacgctggtc gggtactgcc gcgcaaactg attgaagaga aactgtatac ctgggacgaa
     9301 gaggtcacca gtaatgccgt tgaagtgcat gtgcatcatc tgcgacgcaa actcggtagt
     9361 gattttattc gtaccgtgca tggtattggc tacacattag gtgagaaatg aaatttaccc
     9421 aacgtcttag tctgcgcgtc aggctgacgc taatcttttt aattctggcc tcggtgacct
     9481 ggctgctttc cagctttgtc gcctggaaac aaacaacgga taacgtcgat gaattgttcg
     9541 acacccaact gatgctgttt gccaagcggt taagtacgct cgatctcaac gaaatcaacg
     9601 cggcggatcg catggcacag acgccaaata aattaaaaca cggtcatgtt gatgacgatg
     9661 cgctgacctt tgccatcttt acccacgacg gcagaatggt ccttaatgat agcgataacg
     9721 gagaagatat tccctatagc tatcaacggg aaggttttgc tgacgggcaa ctggtcggtg
     9781 aagacgatcc ttggcgtttt gtctggatga cctcacctga tggcaaatat cgcatcgttg
     9841 ttggccagga atgggaatac cgtgaagaca tggcgctggc gattgttgcc gggcaattga
     9901 tcccgtggct ggtcgcactg ccgattatgt taatcatcat gatggtacta ctgggtcgtg
     9961 aactcgcgcc gctgaacaaa ctggcgctgg cactacgtat gcgtgaccct gactcggaaa
    10021 aaccactaaa cgcgactggc gtacccagcg aagtgcgacc actggttgag tcgctaaatc
    10081 aactgttcgc ccgcacacat gcgatgatgg ttcgagaacg acgctttacc tccgatgcag
    10141 ctcacgaact acgtagcccg ttaacagcgc tgaaagtgca aaccgaagtt gcgcagctct
    10201 ctgacgatga tccgcaggca cggaaaaaag cactgctcca attacattcc gggatcgatc
    10261 gcgctactcg tctggttgat caactgctca cgctatcgcg gctggactca ctggataacc
    10321 ttcaggacgt cgcggagatc ccgcttgaag atctcctgca atcgtcggtg atggatattt
    10381 accacacggc gcagcaggcg aaaattgacg tgcgactgac actcaatgtc cagggcatca
    10441 aacgcaccgg acaaccgcta ttgctaagtt tgttggtgcg aaatttgctg gataacgccg
    10501 tgcgttacag tccacagggc agcgtggtgg acgtcacgct gaatgccgat aatttcatcg
    10561 tgagggataa cggccccggt gtgacaccag aggcactggc gcgaattggc gaacgcttct
    10621 atcgcccctc cggacaaacc gctaccggca gtggacttgg gctatcgatt gtccagcgaa
    10681 tcgccaagct gcatggcatg aatgttgagt ttgggaatgc ggaacaaggt ggatttgagg
    10741 cgaaagtaag ctggtaaggg taagactttt gctaaattcg caaaagactt tgcacatttt
    10801 gctaatttca ccgtaccgct ctgtgacgta ctatagtcgg caaacgtctc accttgaggt
    10861 taaaaaatga gcaacattct gattatcaac ggcgcgaaaa aattcgccca ctccaatggt
    10921 caactgaatg acaccctgac cgaagtcgcg gatggcacac tgcgcgacct cgggcatgat
    10981 gttcgcatcg ttcgcgccga cagcgactac gatgtcaaag cggaagtaca aaactttctc
    11041 tgggctgatg tggtgatctg gcagatgcca ggctggtgga tgggcgcgcc gtggacagtg
    11101 aaaaaataca ttgatgatgt attcaccgaa ggtcacggga cgctgtatgc cagcgatggc
    11161 cgtacccgca aagatccgtc aaaaaaatac ggttccggcg gcctggtaca gggcaaaaaa
    11221 tatatgcttt ctctgacctg gaacgcacca atggaagcct tcaccgaaaa agatcaattc
    11281 ttccacggcg ttggcgtcga cggtgtgtat ctgccgttcc ataaagcaaa ccaattcctt
    11341 ggcatggaac cgctgccgac atttatcgct aatgacgtga taaaaatgcc tgatgttccc
    11401 cgctatactg aagaatatcg caagcatctt gtggaaattt ttggttaact agagctcagg
    11461 ctttagaagg agttaaccat gcttaccgta atcgcagaaa tccgtactcg tcctggtcaa
    11521 catcaccgtc aggcggtatt ggatcagttt gctaaaatcg ttccaaccgt actgaaagaa
    11581 gaaggttgcc acggctatgc gccaatggtg gattgcgctg ctggcgtgag tttccagtct
    11641 atggcaccgg attctatcgt gatgattgag cagtgggaaa gcatcgcgca ccttgaagcg
    11701 catctgcaaa ccccgcacat gaaggcgtac agcgaagccg taaaaggtga cgtgctggag
    11761 atgaatattc gtattctgca gccagggatt taatcctgcc ttgtttgccc ggccatcctg
    11821 accgggcaat gttctttcct ttaaacctca atctccgcca tgtcgccttt ctcttgcaac
    11881 cagttgcggc gatcttccga gcgtttcttc gccagtagca tgtccatcat cgcgtcagta
    11941 cgctgatcgt cttcatcatc gatagtcaac tgcaccagac ggcgagtgtt cggatcaagc
    12001 gtggtttcgc gcaattgcat cgggttcatt tcccccagac ctttaaaacg ctggacgttc
    12061 ggcttgcctt tcttgcgttt taattgctca agtacgccct ctttctcttc ttccgtcagc
    12121 gcgtaataaa cctctttccc gagatcaata cggtagagcg gtggcagtgc gacgtaaacg
    12181 tgaccgtgtt tcaccaacgc gcggaagtgt tttacaaaca aagcgcagag cagcgtggca
    12241 atgtgcagac catcggagtc agcatccgcc aggatacaga tcttgccgta acgaagctgg
    12301 ctcaaatcgt cgctgtcagg atcgataccg atcgctaccg aaatatcgtg cacttcctgc
    12361 gaagccagca cttcgtcgga agagacttcc caggtgttaa ggatcttacc tttcagtggc
    12421 atgatcgcct gatattcgcg atcgcgcgcc tgcttggcag atccgcctgc ggagtcacct
    12481 tccacaagaa acagttcggt gcggttaagg tcctgcgcgg tacagtcagc cagtttgcca
    12541 ggcagcgccg gaccgctggt cagcttttta cgcaccactt ttttagccgc acgcatacga
    12601 cgctgggcgc tggaaatcgc catctctgcc agcaactccg ccgcctgaac gttctggttc
    12661 agccacagga taaaggcatc tttcaccacg ccagaaacga atgccgcgca ctgacgcgaa
    12721 gagagacgct ctttggtctg cccggcaaac tgcggatcct gcatttttac tgacagcaca
    12781 taggcgcagc gatcccagat atcttccgcc gacagcttta caccgcgcgg cagaatgttg
    12841 cggtattcac agaactcacg catcgcgtcc agcaggccct gacgcagacc attaacatgg
    12901 gtaccgccct gcatcgttgg gatcaggttg acgtagcttt cggtcagcag ttcaccgcct
    12961 tccggcagcc acagtagcgc ccagtccacc gcttcagtat cgccagcgaa attaccgata
    13021 aacggttttt ctggcagcgt cggtaaaccg tttaccgctt ccgccaggta atcattcaga
    13081 ccgtcctgat agcaccagcg ctgttcggtg ttgttgatct catctttaaa ggtaatctca
    13141 acgccggggc acagtactgc tttggctttc agcacatgcg tcaggcgtga aacagaaaaa
    13201 cgcgggctat cgaagaaggt ttcatccggc cagaaatgga cgctggttcc ggtattgcgt
    13261 ttaccgcaag tgccgacaac ctgtaaatcc tgcacctttt cgccattttc aaaggcgatg
    13321 ttataaatct gaccatcgcg gcgcacgtta acttctacgc gcttcgacag ggcgttaacc
    13381 accgaaatcc ccacgccatg caggccgcca gagaactggt aatttttgtt agagaattta
    13441 ccgcctgcat gcagacggca aagaatcagt tcaaccgccg gtacaccctc ttccgggtga
    13501 atatccaccg gcatcccgcg cccatcgtca ataacttcta acgactggtc agcatgtaaa
    13561 ataacgtcca cgcgttttgc gtgacccgcc agtgcttcat ccacactgtt atcaatgact
    13621 tcttgcccca aatggttagg gcgagtggta tcggtataca tccccggacg gcggcgaacc
    13681 ggctcaagcc cggtgagtac ctcaatggca tcagcgttat aagtttgcgt catggtttaa
    13741 gttagtaatt cgagttgatc gtcagagatg gtgcagacca agaaaatcga cgatcgggtt
    13801 gaaataatct tcgaagcccg tgaatgcgtg gttgccgcct tctatgacag tctggcggca
    13861 ggaagcgtag tacgccaccg cctggcggta atccagcact tcatctcccg tctgttgcag
    13921 cagccagatc aaatccggcg cttccagcgg gtcaatctgc atgactttaa gatcgtaaat
    13981 atggcgtgac tctagcacat attgctgccc ggtgtagggg ttctcgttct gaccgagata
    14041 gtccgtcagc agttcaaacg ggcgcaccgc cgggtttacc accactgcgg gcagcataaa
    14101 acattgtgac aaccaggtgg cgtaatatcc ccccagtgac gaaccgacaa tacccagcga
    14161 atcgccgcca tgttccagga caatggattc cagcagctct gccgcgtcgg aaggatacgg
    14221 cggcaactgc ggaatgatca tctcaacgtc agggtgatgt tccgccagcc agttttttaa
    14281 caagctcgct tttgcagagc gcggcgagct gttgaaaccg tgtaaataaa gaagcgtaga
    14341 catcagtagc cttctgaagc ggtatcaggt tggaaacgtg tgtccgccag gcgatgcacc
    14401 tcggtggtca gcgtgccatc agcatgtaac tcgagagtac gccagccggg cgcgatggta
    14461 tccagcgtaa agttggaaca gtgcggctta aactgcacac aggtcgacgg cgttgccagc
    14521 aggcggcgac cgttccagtc gagatccagc tcctgatgaa tatgaccgca cagcaagtat
    14581 ttgacgtgcg gaaacttcgc cagcacggta tccagttcgc ccgcgttacg cagactgtgt
    14641 tgatcgagcc aactacaacc cgcaggtagc ggatgatgat gcagcagcag caacgtatgg
    14701 cgttctggcg catcggccag tttacgttcc agccactcaa gctgaaactc gctcagctca
    14761 ccgtgcggca cgccaaacac ctggctatcc agcaacagga tttgccattg ctcaccaata
    14821 aacacgcgct tcgccgggga gatacccgca tcctgtaacg cgctgtacat cgcgggctgg
    14881 aaatcgtggt tgcccggcag ccagacgcag ggcgcacgaa aacttgcgat gccttcagcg
    14941 aaatgctgat aggccgcaga ggattgatcc tgcgctaaat cacctgtcgc gacaatcagg
    15001 tcgaattcgt gctgatgtgg acgaatcgcc tccagcaccg cctggtagct ttcccaggtg
    15061 tttaccccta acagggcttc gtgcttttgt gcaaacaggt gagtatcggt aatttgtaaa
    15121 atcctgactc tggcctcacc agccagagga agggttaaca ggctttccaa atggtgtcct
    15181 taggtttcac gacgctagta aaccggaatc gccatcgctc catgtgctaa acagtatcgc
    15241 aaccagtccg ctaaaaactg gttaatttga tgcttttcgt cgcgttgatg caacttttta
    15301 ttaggataat cataccgcgc tttgaagcga aaaatctgct ggcttgaaca cacttcagcc
    15361 accatcgcgt catgatacag acgcaccgtc attgacggaa ggctccagta actgatcgcg
    15421 ggcgcagtct gttctattgt caccaaggta gtgtatcggg tcgattccac agtcgtcagc
    15481 cgatattgtg cgtttgccac ctgatagctt acagtttcgc cgggtgcgtc attgcgcggt
    15541 aacaaacggc gcaattgtga aaagttcatc tcgcacaggc gcatcatttc aggaaagtca
    15601 ggtgtgtaac gcttcattta tgcccactca ttttttaacg cttggtggtg cagctgcagc
    15661 cattgcaaag cgatgaccga cgctgcgttg tcgattttcc cctcttctac ccactggtat
    15721 gcctgttccc ggcttaccac atgaacgcga atatcttcgt tttcatcagc cagaccatga
    15781 ataccgcttg cggtcgtggc gtccacttcg cccaccataa ttgacgaacg ctcactggtg
    15841 ccccccgggc ttgccaggaa acttaacacc ggtttggtcc gtttgactat cagccccgcc
    15901 tcttcaatcg cttcgcgacg ggcaacatct tccacacttt caccctcttc aatcatcccg
    15961 gcaaccatct ccagtagcca gggggtttcg ctagtgtcgt acgcggcaat tcgaatctgc
    16021 tcaatcagca caacttcatc acgcactggg tcaaagggta gcaagactgc ggcgtgaccg
    16081 cgctcaaaaa tttcccgccg cacctcatga ctcatttgcc cgttgaatag actatgacga
    16141 aatctataaa gatctaatga aaaaaagccg cgataaagtg tttctcgtgc aataatttct
    16201 acatcgtttt tgccaaatgt aacgggcagg ttgtctggct taagcattgt taatgtcctg
    16261 gcactaatag tgaattaaat gtgaatttca gcgacgtttg actgccgttt gagcagtcat
    16321 gtgttaaatt gaggcacatt aacgccctat ggcacgtaac gccaaccttt tgcggtagcg
    16381 gcttctgcta gaatccgcaa taattttaca gtttgatcgc gctaaatact gcttcaccac
    16441 aaggaatgca aatgaagaaa ttgctcccca ttcttatcgg cctgagcctt tctgggttca
    16501 gttcgttgag ccaggccgag aacctgatgc aagtttatca gcaagcacgc cttagtaacc
    16561 cggaattgcg taagtctgcc gccgatcgtg atgctgcctt tgaaaaaatt aatgaagcgc
    16621 gcagtccatt actgccacag ctaggtttag gtgcagatta cacctatagc aacggctacc
    16681 gcgacgcgaa cggcatcaac tcgaacgcga ccagtgcgtc cctgcagtta actcaatcca
    16741 tttttgatat gtcgaaatgg cgtgcgttaa cgctgcagga aaaagcagca gggattcagg
    16801 acgtcacata tcagaccgat cagcaaacct tgatcctcaa caccgcgacc gcttatttca
    16861 acgtgttgaa tgctattgac gttctttcct atacacaggc acaaaaagaa gcgatctacc
    16921 gtcaattaga tcaaaccacc caacgtttta acgtgggcct ggtagcgatc accgacgtgc
    16981 agaacgcccg cgcgcagtac gataccgtgc tggcgaacga agtgaccgca cgtaataacc
    17041 ttgataacgc ggtagagcag ctgcgccaga tcaccggtaa ctactatccg gaactggcgg
    17101 cgctgaatgt cgaaaacttt aaaaccgaca aaccacagcc ggttaacgcg ctgctgaaag
    17161 aagccgaaaa acgcaacctg tcgctgttac aggcacgctt gagccaggac ctggcgcgcg
    17221 agcaaattcg ccaggcgcag gatggtcact taccgacgct ggatttaacg gcttctaccg
    17281 ggatttctga cacctcttat agcggttcga aaactcgtgg tgccgctggt acccagtatg
    17341 acgacagcaa tatgggccag aacaaagtgg gcctgagctt ctcgctgccg atttatcagg
    17401 gcggaatggt taactcgcag gtgaaacagg cccagtacaa ctttgttggt gccagcgagc
    17461 aactggaaag cgcgcatcgt agcatcgtgc aaaccgtacg ttcctccttc aacaacatta
    17521 atgcatctat cagtagcatt aacgcctaca aacaagccgt agtttccgct caaagctcat
    17581 tagacgcgat ggaagcgggc tactcggtcg gtacgcgtac cattgttgat gtgttggatg
    17641 caaccaccac gctgtacaac gctaagcaag agctggcaaa tgcgcgttat aactacctga
    17701 ttaatcagct gaatattaag tcagccctgg gtacgttgaa cgagcaggat ctgctggcac
    17761 tgaacaatgc gctgagcaaa ccggtttcca ctaatccgga aaacgttgcc ccgcaaacgc
    17821 cggaacagaa tgctattgct gatggttatg cgcctgatag cccggcaccc gtcgttcagc
    17881 aaacatccgc acgcactacc accagtaacg gtcataaccc tttccgtaac tgatgacgac
    17941 gacggggctt cggccccgtc tgaacgtaag acaacgtaaa gatacgggtt atctgccgca
    18001 ttcttccccc ttctcgcttc aatttcgacc agccatcctc tattctgatg ggtatttacc
    18061 actggtcccg gaagacaaaa atgaaacgga caaaatccat acgccacgca tcgttccgca
    18121 aaaactggag cgcacgccat ctgacaccag tcgctctcgc ggttgccact gtttttatgc
    18181 tggctagctg tgaaaagagt gatgaaacag tgtctctcta tcaaaatgct gacgactgtt
    18241 cagctgcaaa cccaggcaaa agcgccgaat gtaccaccgc gtacaacaat gcgctgaaag
    18301 aagccgaacg tactgcgccg aaatacgcca cccgtgaaga ctgtgttgct gaatttggtg
    18361 aaggtcagtg ccagcaggca ccagcccagg ctggcatggc accagaaaac caggcgcagg
    18421 cccagcaatc cagcgggagt ttctggatgc cgctgatggc cggttacatg atggggcgtc
    18481 tgatgggcgg cggcgcggga tttgcacagc agccgctgtt ctcctcgaaa aacccagcca
    18541 gcccggctta cggtaaatat accgacgcga cgggtaaaaa ctatggcgca gcccagccag
    18601 gccgcaccat gaccgtaccg aagacagcca tggcaccaaa accggcgacc actactaccg
    18661 ttacccgtgg cggttttggt gaatctgttg ccaaacaaag cactatgcag cgtagcgcaa
    18721 ccggcacctc ttctcgttca atgggtggct gataccgatg gaaagagtca gtattaccga
    18781 gcgcccggac tggcgtgaaa aagcccacga atacggtttc aattttcaca ccatgtacgg
    18841 cgagccgtac tggtgtgaag atgcttacta caagttgccc ctcgcccagg ttgaaaagct
    18901 ggaagaagtc accgccgaac tgcaccagat gtgcctgaaa gtggtggaaa aagtgatcgc
    18961 cagcgatgag ctgatgacca aattccgcat tccaaaacac acctggagtt ttgtgcgtca
    19021 gtcatggctg actcaccagc catcgcttta ttcgcgtctt gatctggcat gggatggcac
    19081 tggcgaacct aaactgctgg aaaataacgc cgatacacca acgtcactat acgaggcggc
    19141 gttctttcag tggatctggc tggaagatca gcttaacgcc ggtaacttgc cggagggcag
    19201 cgaccagttt aacagtctgc aagaaaagct aatcgatcgc tttgtcgagt tgcgtgaaca
    19261 gtatggcttc cagttgctgc atctcacctg ctgtcgcgac acggtggaag atcgcggaac
    19321 cattcagtat ttgcaggact gcgcgacgga agctgaaatc gctaccgagt tcctctacat
    19381 tgacgatatc gggttaggtg aaaaaggtca gttcacggat ttacaggatc aggtaatttc
    19441 caacctgttc aagctgtatc catgggaatt tatgttgcgt gagatgttct ccaccaagct
    19501 ggaggatgca ggcgtacgct ggctggaacc ggcgtggaag agcattatct ccaacaaagc
    19561 gcttctaccg ctactgtggg agatgttccc gaatcacccg aacctgctgc ccgcttattt
    19621 tgcggaagat gatcatccgc aaatggaaaa atatgtggtt aaaccgatct tctcccgtga
    19681 aggcgcaaac gtgtcgatca ttgagaacgg caaaaccatt gaagcagcgg aaggtccgta
    19741 tggcgaagaa gggatgattg ttcagcaatt ccatccgtta ccgaaattcg gcgacagcta
    19801 tatgctgatt ggtagctggc tggtgaacga tcaacccgcc ggaattggca ttcgtgaaga
    19861 ccgtgcattg atcacccagg atatgtctcg gttttatcca catatttttg ttgagtaatc
    19921 aatgatgccg gatggcattc gccatccggt aattgttaac ctatctgcac cgacagcata
    19981 ctcaggctgc ccatttctat accatcgacc ggaatggtaa ttggctcctg cccatcccac
    20041 gcacctaaga catacaacaa cggcagatag tgctccggcg ttgggttcga taacgcgcca
    20101 ccttcatggt cgaggtaatt caccagagga tgctgctcta ccgccccttg ccacgtcaga
    20161 ttcgctttca catactcatt aaacgacatc gcccaaggat atggtgaact atcaccgtgc
    20221 cacttcactg tacgcaggtt atgcaccacg ttgccactgg cgaccaacat tattccttca
    20281 tctcgcagcg ctgccagttt gcgccccatt tcgaaatgcc aggcggcagg tttgctactg
    20341 tcgatactca actgcaccat cgggatatcg gcgtcaggat acatcttaat cagcacgccc
    20401 caggaaccgt ggtcaaagcc cctggcttct ttatccagcg tcaccgggac cggcgctaac
    20461 agctcaacca gatgctgtgc cagcacaggc gaacccggag caggataatg cgtatcgtac
    20521 agcgcctgcg ggaagccacc aaagtcatga atcgtgggcg gcgtctccat cgcggtcact
    20581 cctgttccac gggtaaacca gtgagccgaa accaccacaa tcgcttgcgg gcgtggcaat
    20641 gtcatcccca acttctgcca gctgcgggta tacaaattat cttccagcac gttcatcgga
    20701 ctaccgtgac ctaaaaacaa tgctggcata cgtgttgaag acatgatgat atccttaact
    20761 aagggtgtca ttttgatatc ctcacaatac gcttgttcgg cggagtaaga acccggataa
    20821 caatgatgat gatcatcagt tattttgacg atctgcctga aggtgaagat ttataaggag
    20881 ttgtcgatgt cagtacctct cattctgacc atactggcgg gggcagccac gtttattggc
    20941 gcgtttctcg gcgttctcgg acaaaaaccc tcgaaccgct tactggcgtt ttcgctaggt
    21001 tttgcggcgg ggatcatgtt gctcatctca ttaatggaaa tgcttcctgc cgcactagca
    21061 gctgaaggaa tatcgcctgt gttgggttat ggaatgttta tcttcggtct gcttggctac
    21121 tttggcctgg accgcatgtt gccgcatgcg catccgcagg atttaatgca aaaatcggtg
    21181 cagccgttgc caaaatcgat caagcgcaca gccattctgc tcactctcgg catcagtctg
    21241 cataacttcc cggaagggat tgccaccttt gtcacggcga gcagcaacct ggagctggga
    21301 tttggcatcg cactggccgt cgcgttgcac aatatccctg aaggtctggc agtggcaggc
    21361 ccggtttatg cggcaacggg gtctaaacgc accgcgattc tgtgggcggg gatttctgga
    21421 ctagcagaaa ttcttggtgg tgtgctggcg tggttaatcc tcggtagcat gatttccccg
    21481 gtggtcatgg cggcggttgc aggaattatg gtggcgctct cggttgatga attaatgccg
    21541 ctcgccaaag agattgaccc taataataac cccagctatg gcgtactatg tggaatgtca
    21601 gtgatgggat tcagtttagt gctgctacaa acggcgggaa ttggttaaaa acaacatcag
    21661 aagttgtcca gcacatggac aacttctgcc agcttcacga aagccttatt ctaccttttc
    21721 ggctgtctct tctctcgtac tgtttaagta tttgttccgc gcttcaagca gtgcgtctct
    21781 gtcctggcga aacgcccgac aataacgttt caaatgcagg aaataaccca ccacaaccag
    21841 agcaatcaat acaatccagt accaggcgat aaacatcctt tacccttaat atttaacaat
    21901 actaaacatt tagcgcataa atttcacata tcctttttcg gatatattca tatggtcgca
    21961 taataacgga acaattatat gattttgatc ataatgaaaa agaatgcctg atattaatga
    22021 aattttctca tagaaagaga agcggaatta acatcttgca tagcagggca aaataaaaac
    22081 cgaagccagc tacaacttcg gtttcttgat taaggcagta attaagcagc ggttttcagc
    22141 tggctttacg ctcatgtgcc tgacggtatg ccaccaggtc ttcaatagtc acgagcgcca
    22201 tattgtgttt attggcaaac tcaatgcact ctggtgcacg cgccatcgtg ccatcgtcat
    22261 tagtcagctc acacagcaca ccagccggtt taaagcctgc cagcgtcatc aaatcaatag
    22321 tcgcttcagt atgaccgcca cgcgtcagta caccacctgc ctgcgcgcga agtgggaaaa
    22381 cgtggcccgg gcgattcaga tcagaaggtt ttgcgccatc ggcaatcgct gcgcgaacgg
    22441 tcgtaatacg atcagcggca gaaacaccgg tagtcacacc ttcagccgct tcaatggtca
    22501 cggtaaaacc ggtgccatag gcgctggtgt tattttctac catcattggc agatcaagtt
    22561 gtttacggcg atcttcagtg atgcacaggc aaacaatacc gctaccgtgg cgaatggtca
    22621 gcgccatctg ctcaacggtc atggtttctg ccgggaagat catatcgcct tcgttttcac
    22681 ggtcttcatc atcaagcacc attacaccgc gtccttcacg cagcgcagcc agtgcatttt
    22741 caacacgttc gaaaggcgta ccaaaagagg aaagtagcgt ctgattcatg gtaaaaaaaa
    22801 ctcactaaaa ttatggttac cagaatcagg gcagtcttag gagtggcggc atatagccaa
    22861 aataacgtga gcgggtccat gcccgacaga atcgttactc tctcccatcc ggactctaac
    22921 cgtcggcccc ggaattacac cggatctgct gtcctttgag ttcgcaccca aagcgctcgc
    22981 gggctttcaa ctgagttgat ttaccgccgg tggggaattt cgccccgccc tgagaataag
    23041 cggattcact ataacgctaa tgattagcgg cagcaacgca tagcttcaca taattctggt
    23101 ttatgactta cccttatcgc actacaatgg tactcaacac ctatcagtac agggaaacta
    23161 caatgattga cccgaaaaaa attgagcaaa tcgctcgcca agttcacgaa tcaatgccta
    23221 aaggaatcag ggagttcggg gaagatgtgg agaaaaaaat ccgccaaacc ctacaagctc
    23281 agctgacgcg cctcgacctt gtaagccgtg aagagttcga cgtccaaacg caagtcctgt
    23341 tacggactcg tgagaaactg gcgctgcttg aacaaagaat gagcgaactg gaaaatcgca
    23401 gtactgagat taaaaagcag ccagatccag agactctccc cccaacgctg taaacatttg
    23461 tctttaatgc actgtaaatt atgaattaat cttctaattt acagtgcttt ctattacctt
    23521 atcgcttaat tccattcaga atatcaccac aaaaatgaat gagtgcaatt gaaaatatta
    23581 ttgttatgta tttttttaag ttttacttaa tccatattta gataaactaa tttcataaaa
    23641 cccgaaaagt aaaatataat atttgaatga ttagcaatcc ttaaataaca gttactaatc
    23701 attcattttc tacttatatt tatataaagg aatattatgt ctgcttttaa aaagtcactt
    23761 cttgttgctg gcgtagcaat gattctttcc aataacgtat ttgctgacga aggtcacggc
    23821 attgttaaat ttaaaggtga agttatctct gctccatgtt caattaaacc aggtgacgaa
    23881 gacttaactg taaatctggg tgaagtagca gataccgttc tgaaaagcga ccagaaatct
    23941 ttggctgagc ctttcactat tcacctgcaa gactgcatgt tgagccaggg tggaaccact
    24001 tattcaaaag cgaaggttac tttcaccaca gcgaatacta tgacgggtca gactgacctg
    24061 ctgaaaaaca ccaaagaaac tgaaatcggt ggtgccacag gcgttggcgt acgtattctg
    24121 aatagccaga gcggcgaagt gactttaggt actccggtag taattacatt caacaatact
    24181 aacagctatc aggaactgaa cttcaaagtt cgtatggaat ccccgggcaa agatgctacc
    24241 ccgggcaacg tttacgctca ggctgactat aagattgctt acgagtaatc acattaggcc
    24301 gggttcgccc ggccacatca ttaacggatt aatgataagt ggaacagatg tataaaaaat
    24361 taaaattaac cacaataagc gaattgatta aaaatattta ttgttcatta tccgttctca
    24421 tcattggttg tgcgtcagct tatgccgttg aattcaacaa agatttaatc gaagccgaag
    24481 atcgtgaaaa cgttaacctt tcccaatttg aaactgatgg ccaattaccc gtaggtaaat
    24541 actcattaaa cgctattatt aataataaaa ggacgccaat ccatctggac ctgcaatggg
    24601 tattaattga taaccaaact gcagtttgtc tgactccaga gcaattaaca ttattaggct
    24661 ttactgatga gattattgaa gaggctcagc aaaacctgat cgatggttgt taccctatcg
    24721 aaaaagaaaa acaaattaca acttatctcg ataaagggaa aatgcaatta tccatatctg
    24781 cacctcaggc atggttaaaa tacaaagatg caaactggac gcctcctgaa ctttgggatc
    24841 atggtattgc tggggcattt cttgactaca atttatatgc ctctcattat gcaccacatc
    24901 agggcgataa ttcacaaaat ataagttcct atgggcaggc tggggttaat cttggggcct
    24961 ggcgcctgcg tactgattac cagtacgatc agtcatttaa caatggcaaa agccaggcga
    25021 acaacctgga ttttccgcgt atttatttgt ttcgcccaat cccagcaatt aatgcaaaac
    25081 taactatagg tcaatacgat actgaatcct ctattttcga ctctttccat ttttctggcg
    25141 tttcgttgaa aagcgatgag aatatgttgc cgcctgatct acgtggttac gcaccgcaaa
    25201 tcacgggtgt tgcacaaacg aatgcaaagg tcactgtctc acagaacaac cgtattattt
    25261 atcaagaaaa tgttcctcct ggcccatttg ctattactaa tttattcaat acattacagg
    25321 ggcaactgga cgtcaaggtt gaagaagagg acgggcaagt cacgcaatgg caagttgcat
    25381 ctaatagtat tccttatctg acgcgtaaag ggcagattcg ctacaccact gctatgggta
    25441 aaccgaccag cgttggtggt gattccttac aacaaccctt cttctggact ggtgaattct
    25501 catggggttg gctgaacaat gtatccctgc atggtggttc agttttaaca aaccgtgatt
    25561 atcaatctct ggctgccggc gttggcttta accttaactc attgggttca ttatcttttg
    25621 atgtcacacg atctgatact cagttgcata atcaggataa agaaacgggt tatagctacc
    25681 gcgctaacta ttcaaaacgt tttgaatcta ccggtagcca gctcactttc gctggttacc
    25741 gtttctctga taaaaacttt gtgacaatga atgaatatat caatgacact aaccattaca
    25801 cgaat
//
LOCUS       DADMJB010000042        25509 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.042, whole genome shotgun sequence.
ACCESSION   DADMJB010000042 DADMJB010000000
VERSION     DADMJB010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25509
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.042"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..183
                     /locus_tag="JN078_001574"
     CDS             <1..183
                     /locus_tag="JN078_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine:cation symporter family protein"
                     /protein_id="HAY9040820.1"
                     /translation="ACMAITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPD
                     IGRQLSPDAWDDVSQE"
     gene            253..1029
                     /gene="yaaA"
                     /locus_tag="JN078_001575"
     CDS             253..1029
                     /gene="yaaA"
                     /locus_tag="JN078_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HAY9040821.1"
                     /translation="MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPP
                     QISTLMRISDKLAGINAARFHDWQPDFTPANARQAILAFKGDVYTGLQAETFSEDDFD
                     FAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENARGKDLYQFWGDIITNKLNEALA
                     AQGDNVVINLASDEYFKSVKPKKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLMSRF
                     IIENRLTKPEQLTGFNSEGYFFDEASSSNGELVFKRYEQR"
     gene            complement(1182..1478)
                     /locus_tag="JN078_001576"
     CDS             complement(1182..1478)
                     /locus_tag="JN078_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2502 domain-containing protein"
                     /protein_id="HAY9040822.1"
                     /translation="MKKMQSIVLALSLVLVAPMAAQAAEITLVPSVKLQIGNRDNRGY
                     YWDGGHWRDHGWWKQHYEWRGNRWHPHGPPPPPRHHKKAPHDHHGGHGPGKHHR"
     gene            complement(1692..2978)
                     /gene="thrC"
                     /locus_tag="JN078_001577"
     CDS             complement(1692..2978)
                     /gene="thrC"
                     /locus_tag="JN078_001577"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HAY9040823.1"
                     /translation="MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEID
                     EMLKLDFVTRSAKILSAFIGDEIPQEILEERVRAAFAFPAPVANVESDVGCLELFHGP
                     TLAFKDFGGRFMAQMLTHIAGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRG
                     KISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSANSINISR
                     LLAQICYYFEAVAQLPQEARNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVN
                     DTVPRFLHDGQWSPKATQATLSNAMDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDE
                     TTQQTMRELKELGYTSEPHAAVAYRALRDQLNPGEYGLFLGTAHPAKFKESVEAILGE
                     TLDLPKELAERADLPLLSHNLPADFAALRKLMMNHQ"
     gene            complement(2979..3911)
                     /gene="thrB"
                     /locus_tag="JN078_001578"
     CDS             complement(2979..3911)
                     /gene="thrB"
                     /locus_tag="JN078_001578"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HAY9040824.1"
                     /translation="MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETF
                     SLNNLGRFADKLPSEPRENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACS
                     VVAALMAMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDI
                     ISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQ
                     PELAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPDTA
                     QRVADWLGKNYLQNQEGFVHICRLDTAGARVLEN"
     gene            complement(3913..6375)
                     /gene="thrA"
                     /locus_tag="JN078_001579"
     CDS             complement(3913..6375)
                     /gene="thrA"
                     /locus_tag="JN078_001579"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase I"
                     /protein_id="HAY9040825.1"
                     /translation="MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKIT
                     NHLVAMIEKTISGQDALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIK
                     HVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHY
                     LESTVDIAESTRRIAASRIPADHMVLMAGFTSGNEKGELVVLGRNGSDYSAAVLAACL
                     RADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQF
                     QIPCLIKNTGNPQAPGTLIGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAAR
                     VFAAMSRARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAV
                     TERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATT
                     GVRVTHQMLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSWLKNKHIDLRVCGVANSKA
                     LLTNVHGLNLENWQEELAQAKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYAD
                     FLREGFHVVTPNKKANTSSMDYYHLLRHAAEKSRRKFLYDTNVGAGLPVIENLQNLLN
                     AGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARK
                     LLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARDEG
                     KVLRYVGNIDEDGACRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAG
                     NDVTAAGVFADLLRTLSWKLGV"
     gene            complement(6455..6520)
                     /gene="thrL"
                     /locus_tag="JN078_001580"
     CDS             complement(6455..6520)
                     /gene="thrL"
                     /locus_tag="JN078_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thr operon leader peptide"
                     /protein_id="HAY9040826.1"
                     /translation="MKRISTTITTTITITTGNGAG"
     gene            complement(6734..7420)
                     /locus_tag="JN078_001581"
     CDS             complement(6734..7420)
                     /locus_tag="JN078_001581"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA/rRNA methyltransferase"
                     /protein_id="HAY9040827.1"
                     /translation="MRITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPAT
                     RWVAHGSGDIIDNIKVFPTLVESLHDVDFTVATTARSRAKYHYYATPVELVLLLEEKS
                     SWMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQ
                     QPTKSDTTADQHQLQALRERVMALLTTLAVADDIKLVDWLQQRLGLLEQRDTAMLHRL
                     LHDIEKNITK"
     gene            complement(7820..7960)
                     /locus_tag="JN078_001582"
     CDS             complement(7820..7960)
                     /locus_tag="JN078_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040828.1"
                     /translation="MTKVRNCVLDALSINVNNIISLVVGTFPQDPTVSKTAVILTILT
                     AT"
     gene            8056..8772
                     /gene="arcA"
                     /locus_tag="JN078_001583"
     CDS             8056..8772
                     /gene="arcA"
                     /locus_tag="JN078_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003856501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator ArcA"
                     /protein_id="HAY9040829.1"
                     /translation="MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS
                     EYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYIT
                     KPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYK
                     LPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDT
                     PEIIATIHGEGYRFCGDLED"
     gene            complement(8832..10184)
                     /gene="creD"
                     /locus_tag="JN078_001584"
     CDS             complement(8832..10184)
                     /gene="creD"
                     /locus_tag="JN078_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein CreD"
                     /protein_id="HAY9040830.1"
                     /translation="MLKSPLFWKMTTLFGAVLLLLIPIMLIRQVIVERADYRSDVEDA
                     IRQSTSGPQKLVGPLIAIPVTELYTVQEEDKTVERKRSFIHFWLPESLMVDGNQNVEE
                     RKIGIYTGQVWHSDLTLKADFDVSRLSELNAPNIILGKPFIVISVGDARGIGVVKAPE
                     VNGTALTIEPGTGLEQGGQGVHIPLPEGDWRKQNLQLNMALNLSGTGDLSVVPAGRNS
                     EMPLTSNWPHPSFLGDFLPAKREVSESGFQAQWQSSWFANNLGERFASGNDTGWENFP
                     AFSVAVTTPADQYQLTDWATKYAILLIALTFMAFFVFETLTAQRLHPMQYLLVGLSLV
                     MFYLLLLALSEHIGFTVAWIIASLIGALMNGIYLQAVLKGWRNSMLFTLALLLLDGVM
                     WGLLNSADSALLLGTSVLVVALAGMMFVTRNIDWYAFSLPKMKASKEVTMDDQLRIWK
                     "
     gene            complement(10242..11666)
                     /gene="creC"
                     /locus_tag="JN078_001585"
     CDS             complement(10242..11666)
                     /gene="creC"
                     /locus_tag="JN078_001585"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     CreC"
                     /protein_id="HAY9040831.1"
                     /translation="MRIGMRLLLGYFLLVAVAAWFVLAIFVKEVKPGVRRATEGTLID
                     TATLLAELARPDLLSGDPTHGQLAQAFNQLQHRPFRANIGGINKVRNEYHVYMTDSQG
                     KVLFDSANKAVGQDYSRWNDVWLTLRGQYGARSTLQNPADPESSVMYVAAPIMDGSRL
                     IGVLSVGKPNAAMAPVIKRSERRILWASAILLGIALVIGAGMVWWINRSIARLTRYAD
                     SVTDNKPVPLPELGSSELRKLAQALESMRVKLEGKNYIEQYVYALTHELKSPLAAIRG
                     AAEILREGPPPEVVARFTDNILTQNARMQALVETLLRQARLENRQEVVLTVVDVAALF
                     RRVSEARTVQLAEKNITLHVMPTEVNVAAEPALLEQALGNLLDNAIDFTPESGRITLS
                     AEVDQEHVALKVLDTGSGIPDYALSRIFERFYSLPRANGQKSSGLGLAFVSEVARLFN
                     GEVTLRNVQEGGVLASLRLHRHFT"
     gene            complement(11666..12355)
                     /gene="creB"
                     /locus_tag="JN078_001586"
     CDS             complement(11666..12355)
                     /gene="creB"
                     /locus_tag="JN078_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator CreB"
                     /protein_id="HAY9040832.1"
                     /translation="MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKAR
                     QLVPDVMILDVGLPDISGFELCSQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYV
                     AKPFSPREVCARVRTLLRRVKKFSSPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEF
                     LLLKTLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLHAKLRAINPDLSPINT
                     HRGMGYSLRGL"
     gene            complement(12368..12841)
                     /gene="creA"
                     /locus_tag="JN078_001587"
     CDS             complement(12368..12841)
                     /gene="creA"
                     /locus_tag="JN078_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein CreA"
                     /protein_id="HAY9040833.1"
                     /translation="MKYKHLILSLSLIMLGPLAHAEEIGSVDTVFKMIGPDHKIVVEA
                     FDDPDVKNVTCYVSRAKTGGIKGGLGLAEDTSDAAISCQQVGPIELSDRIKNGKAQGE
                     VVFKKRTSLVFKSLQVVRFYDAKRNALAYLAYSDKVVEGSPKNAISAVPVMPWRQ"
     gene            13052..13921
                     /gene="robA"
                     /locus_tag="JN078_001588"
     CDS             13052..13921
                     /gene="robA"
                     /locus_tag="JN078_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MDR efflux pump AcrAB transcriptional activator
                     RobA"
                     /protein_id="HAY9040834.1"
                     /translation="MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKD
                     VTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPAL
                     YRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMR
                     YQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVM
                     LQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRP
                     INLRCELLIPIRR"
     gene            complement(13918..14565)
                     /gene="gpmB"
                     /locus_tag="JN078_001589"
     CDS             complement(13918..14565)
                     /gene="gpmB"
                     /locus_tag="JN078_001589"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase GpmB"
                     /protein_id="HAY9040835.1"
                     /translation="MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATRAK
                     ELGITHIISSDLGRTRRTAEIIAQACGCDIIFDSRLRELNMGVLEKRHIDSLTEEEEN
                     WRRQLVNGTVDGRIPEGESMQELSDRVNAALESCRDLPQGSRPLLVSHGIALGCLVST
                     ILGLPAWAARRLRLRNCSISRVDYQESLWLASGWVVETAGDISHLDAPALDELQR"
     gene            14617..15138
                     /gene="yjjX"
                     /locus_tag="JN078_001590"
     CDS             14617..15138
                     /gene="yjjX"
                     /locus_tag="JN078_001590"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001649724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-canonical purine NTP phosphatase"
                     /protein_id="HAY9040836.1"
                     /translation="MHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQ
                     PFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENTSQRGEARSA
                     TLPLPAVILQKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVIL
                     ALSPFHNAVYQAL"
     gene            complement(15223..15549)
                     /gene="trpR"
                     /locus_tag="JN078_001591"
     CDS             complement(15223..15549)
                     /gene="trpR"
                     /locus_tag="JN078_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon repressor"
                     /protein_id="HAY9040837.1"
                     /translation="MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLT
                     PDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEE
                     VLLKSD"
     gene            complement(15639..17576)
                     /gene="sltY"
                     /locus_tag="JN078_001592"
     CDS             complement(15639..17576)
                     /gene="sltY"
                     /locus_tag="JN078_001592"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase"
                     /protein_id="HAY9040838.1"
                     /translation="MEKAKQVTWRLLAAGVCLLTVSSVARADSLDEQRSRYAQIKQAW
                     DNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQ
                     SRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK
                     SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAI
                     ISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNED
                     QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTW
                     LARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYE
                     LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYA
                     FNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAW
                     NPKVKSPVGASGLMQIMPGTATHTVKMFSIPGYSSPGQLLDPETNINIGTSYLQYVYQ
                     QFGNNRIFSSAAYNAGPGRVRTWLGNSAGRIDAVAFVESIPFSETRGYVKNVLAYDAY
                     YRYFMGDKPTLMSATEWGRRY"
     gene            17787..19454
                     /gene="ettA"
                     /locus_tag="JN078_001593"
     CDS             17787..19454
                     /gene="ettA"
                     /locus_tag="JN078_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HAY9040839.1"
                     /translation="MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAG
                     KSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQEPQLNPEHTVRESIEEAVSEVVNALK
                     RLDEVYALYADPDADFDKLAAEQGRLEEIIQAHDGHNLNVQLERAADALRLPDWDAKI
                     ANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHD
                     RYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWV
                     RQGTKGRQSKGKARLARFEELNSTEYQKRNETNELFIPPGPRLGDKVLEVSNLRKSYG
                     DRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITLGETVKLASVD
                     QFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGER
                     GRLHLAKLLQVGGNMLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIA
                     THILDYQDEGKVEFFEGNFTEYEEYKKRTLGADALEPKRIKYKRIAK"
     gene            complement(19761..20993)
                     /locus_tag="JN078_001594"
     CDS             complement(19761..20993)
                     /locus_tag="JN078_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418807.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trifunctional nicotinamide-nucleotide
                     adenylyltransferase/ribosylnicotinamide
                     kinase/transcriptional regulator NadR"
                     /protein_id="HAY9040840.1"
                     /translation="MSSFDYLKTAIKQQGCTLQQVADASGMTKGYLSQLLNAKIKSPS
                     AQKLEALHRFLGLEFPRQKKTIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGFDD
                     TRDRALFEDSAMSQQPTVPDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSNG
                     IKKFMAEKGIQPDLIYTSEEADAPQYMEHLGIDTVLVDPKRTFMSISGAQIRENPFRY
                     WEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDE
                     IALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVTTQAFCKKYEGREHPFVQALI
                     DEYRFDLVILLENNTPWVADGLRSLGSSVDRKEFQNLLVEMLEENNIEFVRVEEDDYD
                     SRFLRCVELVREMMGEQR"
     gene            complement(21014..22396)
                     /gene="radA"
                     /locus_tag="JN078_001595"
     CDS             complement(21014..22396)
                     /gene="radA"
                     /locus_tag="JN078_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001399683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HAY9040841.1"
                     /translation="MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPT
                     VARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGG
                     NPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIE
                     QICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV
                     GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQG
                     LREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLE
                     QNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQ
                     DLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKL
                     SDALSVFDDL"
     gene            complement(22445..23413)
                     /gene="serB"
                     /locus_tag="JN078_001596"
     CDS             complement(22445..23413)
                     /gene="serB"
                     /locus_tag="JN078_001596"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase"
                     /protein_id="HAY9040842.1"
                     /translation="MPNITWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYG
                     RGLDKQRLTQYQSKLGAAMVIVAAWCVEDYQVIRLAGSLTARATRLAHEAQLDVAPLG
                     KIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEMVAEVTERAMRGELDFTASLRS
                     RVATLKGADANILQQVRENLPLMPGLTQLVLKLETLGWKVAIASGGFTFFAEYLRDKL
                     RLTAVVANELEIMDGKFTGNVIGDIVDAQYKAKTLTRLAQEYEIPLAQTVAIGDGAND
                     LPMIKAAGLGIAYHAKPKVNEKAEVTIRHADLMGVFCILSGSLNQK"
     gene            23519..24163
                     /locus_tag="JN078_001597"
     CDS             23519..24163
                     /locus_tag="JN078_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtjB family periplasmic protein"
                     /protein_id="HAY9040843.1"
                     /translation="MARTKLKFRLHRAVIVLFCLALLVALMQGASWFSQNHQRQRNPQ
                     LEELARTLARQVTLNVAPLMRTDSPDEKRIQAILDQLTDESRILDAGVYDEQGDLIAR
                     SGESVEVRDRLALDGKKAGGYFNQQIVEPIAGKNGPLGYLRLTLDTHTLATEAQQVDN
                     TTNILRLMLLLSLAIGVVLTRTLLQGKRTRWQQSPFLLTASKPVPEEEESEKKE"
     gene            24191..25207
                     /gene="lplA"
                     /locus_tag="JN078_001598"
     CDS             24191..25207
                     /gene="lplA"
                     /locus_tag="JN078_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase LplA"
                     /protein_id="HAY9040844.1"
                     /translation="MSTLRLLISDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTV
                     VIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTIST
                     SIVLNALNALGVSAEASGRNDLVVKTAEGDRKVSGSAYRETKDRGFHHGTLLLNADLS
                     RLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITKAFFAHYGERVEA
                     EIISPDKTPDLPNFAEIFARQSSWEWNFGQAPAFSHLLDERFSWGGVELHFDVEKGHI
                     TRAQVFTDSLNPAPLEALAGRLQGCLYRADMLQQECEALLVDFPDQEKELRELSTWIA
                     GAVR"
BASE COUNT         6131 a         7029 c         6335 g         6014 t
ORIGIN      
        1 gcctgcatgg ctattaccaa tttgaccgcc attttactgc tctcgcctgt ggttcatacc
       61 attgccagtg attatctacg ccagcgtaaa ctcggcgtgc gcccggtgtt tgatccgttg
      121 cgttatccgg atatcggtcg ccagctttct ccggacgcgt gggatgatgt ttcgcaggag
      181 taatcacaac tatcgatcaa ctcattctct ttttttgcta aagtcggcat aaatttcctg
      241 caaggactgg atatgctgat tcttatttca cctgcgaaaa cgcttgatta ccaaagcccg
      301 ttgaccacca cgcgctatac gctgccggag ctgttagaca attcccagca gttgatccat
      361 gaagcgcgga aactgacgcc tccgcagatt agcacgctga tgcgcatcag cgacaaactg
      421 gcgggtatca acgccgctcg ctttcatgac tggcagccag atttcacgcc ggcgaatgcc
      481 cgccaggcga ttctggcgtt taaaggtgat gtctacaccg gcttgcaggc cgaaaccttc
      541 agcgaagacg atttcgattt tgcccaacag catttgcgaa tgctttccgg cttgtatggc
      601 gtactgcgcc cgctcgattt aatgcagcct tatcgtctgg aaatggggat ccgtcttgag
      661 aatgcccgag ggaaagatct gtatcaattc tggggagata tcatcaccaa caagctgaac
      721 gaggcgctcg cagcacaagg cgataatgtg gtgattaatc tggcgtcaga tgagtatttt
      781 aaatcggtga agccgaagaa attgaatgcc gagattatca agccggtgtt cctcgatgag
      841 aagaacggca aatttaagat catcagcttc tacgctaaga aagcacgcgg tctgatgagt
      901 cgtttcatta ttgaaaatcg gctgaccaaa ccagagcaac tgactggttt taatagcgaa
      961 ggttacttct ttgatgaagc ttcctccagc aatggcgaac tggtgtttaa acgctacgag
     1021 cagcgttaag tttgcagtca atgccggatg cggcgtgaac gccttatccg gcctacaaaa
     1081 gcatgcagat tcaatatatt gcagaattca cgtaggcctg ataagacgcg ccagcgtcgc
     1141 atcaggcgct gaatgccgga ttgttacccg gcatttgtca tttagcggtg atgtttgcct
     1201 ggaccatgac cgccgtgatg atcatgagga gctttcttat ggtggcgcgg cggtggcggc
     1261 ggtccgtgtg ggtgccagcg attgcctcgc cattcataat gttgtttcca ccagccgtgg
     1321 tcgcgccagt gacctccatc ccagtaatag ccacgattat cacgattgcc tatctgtaat
     1381 tttactgacg ggactaacgt aatttccgca gcctgtgctg ccatgggagc gaccagaacc
     1441 agggaaagtg cgagtacgat agattgcatc tttttcacag gttactcctt ttatcattgc
     1501 ccgttatggg tcgatatccg gagattacgc gatgagaacg acggttgtta ttctccgcaa
     1561 tcctaatctc taagttaccg catttattga gaatatctcc tttttccctg tcgtttttct
     1621 ccataatttc ttcataaaaa agccgggctg cataaaagca aacccggcct gattgagata
     1681 atgaatagat tttactgatg attcatcatc aatttacgca acgcagcaaa atcggcgggc
     1741 agattatgtg aaagcaaggg taaatcagca cgttctgcca gctcttttgg cagatccaac
     1801 gtttcaccga gaatcgcttc cacgctctct ttaaatttcg ccggatgcgc ggtgccgagg
     1861 aacaagccat attcgcctgg attcaactgg tcacgcagcg cacgatacgc tacggcagcg
     1921 tgcggctccg aggtgtagcc cagttctttt aactcacgca ttgtctgttg cgtggtttca
     1981 tcatccacgg ctgcataacc cagctctttc agttgccaga ttttgcggcg gaacaactct
     2041 tccacacgcg gccagttgtt cggctgactc acgtccatcg cgttggataa cgtcgcctga
     2101 gtcgctttgg gtgaccactg accgtcgtgc aggaaacgtg gcacggtatc gttcacgttg
     2161 gtcgcagcaa taaaacgttt caccggcaga ccgagtgact tcgccagcag acccgccgtc
     2221 aaatcgccga agtttccgct tggcaccgag acaaccagct ggttgcgcgc ttcctgcggc
     2281 agctgcgcaa ctgcttcaaa gtagtagcaa atctgcgcca gcaaacggct gatgttaatc
     2341 gagttagctg agtttaaccc cagcgccact ttcagctctt catcatcaaa cgcctgcttc
     2401 accagcgcct gacaggcatc gaaatcgccg tcgatggcaa cagtttcgat attgccgccc
     2461 aatgtacaga acagtttttc ttgcagtgga ctgattttgc ctcgtggata gaggataacc
     2521 actttcacat tcggtaaacc gtagaaagca tgagccactg ccgctccggt atcaccggag
     2581 gtcgcggtca gaatggtcac tggcttatcg cccgcaatat gggtcagcat ttgtgccata
     2641 aagcgaccgc cgaaatcttt aaatgccagc gttggcccgt ggaacaattc cagacaaccg
     2701 acatcgcttt caacattggc gaccggagcc gggaaggcaa acgccgcgcg cacgcgctct
     2761 tccaggattt cctgcgggat ttcatcacca ataaacgccg agaggatctt cgcactgcgg
     2821 gtgacaaaat ccagcttcag catctcatca atttcagtca ggctgaattc cggcaggtcg
     2881 tgcggaaaaa acagcccctg atttttgccc aacccctggg ttacggcttg cgcaaagctg
     2941 acctgctcat tgtgatcttt cagattgtag agtttcattt agttttccag tactcgtgcg
     3001 cccgccgtat ccagccggca aatatgaaca aaaccttcct gattttgcag gtagttctta
     3061 cccaaccagt cggcaacgcg ctgggcggta tccggcttgt cacacagagc gaacaaggtc
     3121 gggccggagc cggagatacc gctcgctacc gcgccgattt ccgcaaccgc ctgccgcgcc
     3181 tgccggaagc caggcagtaa ccgttcacgg tagggttcag cgataacatc tttcatcagc
     3241 ttcgcggcaa gctcaggctg acgggaatag caggcgtgaa tgaagccagc cagatgtcgc
     3301 ccgtgcgcaa tgcaatcctg gcggcgatac tgcgccggta aaatagccct ggcttctgcc
     3361 gttgagactt taatccccgg atacgccagc acccacagcc actcatcaaa ccctggcact
     3421 tgctggctga tgatgtcgtt ttcttcgatc atcaactgca taccaccaag aaaacacggt
     3481 gccacgttgt cgtaatgaat gctgccggag attcgtcctt ccagctcgcc catcaaagcc
     3541 agcaaacgag tgtcattaag cggcttgcca cagtgttcat tcatcgccat cagcgccgcg
     3601 accaccgaac aggcgctgga gcctaagccc gaaccgattg gcatattctt ttccagagtc
     3661 atcgccactg gaatttgctt gccaagctcc tggcaaaaac gctcccagca ctgataaacg
     3721 atattttccc gtggttctga cggcagctta tcggcaaagc gtccgaggtt gttgagactg
     3781 aatgtctctg ccgcctcaac cgtgactaca tctccgagca atgcaccatc aacaggtgtc
     3841 accgccgccc cgagcacatc aaacccgacg ctcatattgg cactggaagc cggggcataa
     3901 actttaacca tgtcagactc ctaacttcca tgagagggta cgtagcagat cggcaaagac
     3961 accggcagct gtaacgtcat tgcccgcacc atatccgcgc agcaccaacg gcagcggctg
     4021 ataatagtgg ctataaaagg ccagggcgtt ttcgccattt ttcactttga acagcggatc
     4081 attaccatcc acttcggcaa tcttcacgcg gcaggcacca tcttcatcaa tattgccaac
     4141 atagcgcaaa acttttcctt catcacgggc cttcgccacg cgcgcggcaa agagatcgtc
     4201 gagctgtgac agattcgcca taaaagcggc aacatcaccc tcagcgttaa actctgcggg
     4261 cagcacaggt tcaatttcaa tatccgccag ctccagttca cgtcccgttt cacgagcgag
     4321 aatcaatagc ttacgcgcta catccatacc agaaagatca tctcgcggat ccggttcggt
     4381 ataacccatt tcccgcgcca gagtagtcgc ctcggagaaa ctcatgcctt cgtctaactt
     4441 gccgaagata taagaaagcg aacctgaaag aatgccggag aacttcatca attcatcacc
     4501 agcattgagc agattttgca ggttctcaat aaccggtaat ccagccccaa cgttggtgtc
     4561 atagaggaat ttacgccgcg atttttccgc cgcatgacgc aacagatggt agtaatccat
     4621 cgacgaggtg ttggcctttt tgttcggcgt gacaacgtgg aaaccttcgc gcaagaagtc
     4681 ggcatattga tccgccactg cctggctgga ggtgcagtca acaatgaccg ggttcagcag
     4741 atgatattct ttcacgaggc gaattaagcg cccgagatta aacggctctt tggcttgcgc
     4801 cagttcttcc tgccagtttt ccagatttag gccatgcaca ttggtgagca gtgccttcga
     4861 gttggcaaca ccgcagacac gtaagtcgat atgtttattc ttcagccagc tttgttgacg
     4921 cttcagttgc tccagcagcg caccgccaac gccaccgacg ccaatcacaa acacttcgat
     4981 aacctgatcg gtattgaaca gcatctgatg agtaacgcgc acgccagtgg tcgcatcatc
     5041 gttatttacc acgacagaga ttgagcgttc agaagatccc tgagcaatgg cgacaatgtt
     5101 gatattggcg cgggccagcg cggcaaagaa tttcgccgag atcccacgca aggtgcgcat
     5161 accatcacct accaccgaga taatggccag ccgttccgtc accgccagcg gctccagtaa
     5221 gccttctttc agttccaggt agaactcttc ctgcattgcc cgttcagctc gcacacagtc
     5281 gctttgtgga acgcagaaac tgatactgta ttcggaagat gattgcgtaa tcagcaccac
     5341 ggaaatacgg gcgcgtgaca ttgcagcaaa gacgcgcgcc gccatgccga ccattccttt
     5401 catccccgga ccagaaacgc tgaacattgc catattattc agattggaaa tgcctttgac
     5461 cggtaattcg tcttcatcac ggctggcacc aatgagcgta cctggtgctt gaggatttcc
     5521 ggtattttta atcaggcaag ggatctggaa ctgggcgatg ggggtaatgg tgcgggggtg
     5581 aagaacttta gcgccgaagt aggaaagctc catcgcttcc tggtaggaca tcgacttcaa
     5641 caacctcgca tcgggcacct gacgcgggtc gcaggtatag accccgtcaa cgtccgtcca
     5701 aatctcgcaa caatcggcgc gtaaacaggc agccagcacc gccgcggagt agtcggaacc
     5761 gttacgtcca agtaccacca gttcgccttt ttcattaccg gaggtgaaac ctgccatcaa
     5821 caccatgtga tcagccggaa tgcggcttgc cgcaatacgg cgggtggact cagcaatatc
     5881 gacggtagat tcgaggtaat gccccactgc cagcagtttt tcgaccggat cgataacggt
     5941 aacgttgtga ccacgagctt ctaacacgcc ggccataatg gcgatcgaca ttttctcgcc
     6001 acggcaaatc agcgcagcgt tgatgctatc cgggcactgc cccaacaaac taatgccatg
     6061 caggacatgt tttatttggg caaattcctg atcgacgaaa gttttcaatt gcgccagcgg
     6121 gaaccccggc tgggcggcgg cgagtcccgt caaaagttcg gcaaaaatac gttcggcatc
     6181 gctgatattg ggtaaagcat cctggccgct aatggttttt tcaatcatcg ccaccaggtg
     6241 gttggtgatt ttggcggggg cagagaggac ggtggccacc tgcccctgcc tggcattgct
     6301 ttccagaata tcggcaacac gcagaaaacg ttctgcattt gccactgatg taccgccgaa
     6361 cttcaacact cgcatggttg ttacctcgtt acctttggtc gaaaaaaagc ccgcactgtc
     6421 aggtgcgggc ttttttctgt gtttcctgta cgcgtcagcc cgcaccgtta cctgtggtaa
     6481 tggtgatggt ggtggtaatg gtggtgctaa tgcgtttcat ggatgttgtg tactctgtaa
     6541 tttttatctg tctgtgcgct atgcctatat tggttaaagt atttagtgac ctaagtcaat
     6601 aaaattttaa tttactcacg gcaggtaacc agttcagaaa ctgctatcag acactctttt
     6661 tttaatccac acagagacat attgcccgtt gcagtcagaa tgaaaagctg aaaaatactt
     6721 actaaggcgt tttttatttg gtgatatttt tttcaatatc atgcagcaaa cggtgcaaca
     6781 ttgccgtgtc tcgttgctct aaaagcccca ggcgttgttg taaccagtcg accagtttta
     6841 tgtcatctgc cactgccaga gtcgtcagca atgccatgac tcgttcgcgt aaagcttgca
     6901 gttgatgttg gtctgccgtt gtgtcacttt tcgtcggttg ttgtattaat gttgctaatt
     6961 gatagcaata gaccatcacc gcctgcccca gattgagcga aggataatcc gccaccatcg
     7021 gcacaccagt aagaacgtca gccaacgcta actcttcgtt agtcagcccg gaatcttcgc
     7081 gaccaaacac cagcgcggca tggctcatcc atgaagattt ttcctctaac agcagcacca
     7141 gttctactgg cgtggcgtag taatgatatt tcgcccgact gcgcgcagtg gtggcgacag
     7201 tgaaatcgac atcgtgtaac gattcaacca gtgtcgggaa aactttaata ttatcaataa
     7261 tatcaccaga tccatgtgcg acccagcgag tggctggctc cagatgtgcc tgactatcga
     7321 caatccgcag ttcgctaaaa cccatcgttt tcattgcccg cgccgctgcc ccaatatttt
     7381 ctgctctggc gggtgcgacc agaataatcg ttatacgcat attgccactc ttcttgacca
     7441 aatgaccgcg aacagggtga tcactgtcaa cttattacac ggtgcgaatt tacaaatcct
     7501 taacgtaagt cgcagaaaaa gccctttact tatcttaagt aaggctaaac tatttcctga
     7561 ctgtactaac ggttgaattg ttaaaaaatg ctacatatcc ttctgtttac ttaggataat
     7621 tttataaaaa ataaatctcg acaattggat tcaccacgtt tattagttgt atgatgcaac
     7681 tagttggatt attaaaataa tgtgacgaaa gctagcattt agatacgatg atttcatcaa
     7741 actgttaacg tgctacaatt gaacttgata tatgtcaacg aagcgtagtt ttattgggtg
     7801 tccggcccct cttagcctgt tatgttgctg ttaaaatggt taggatgaca gccgtttttg
     7861 acactgtcgg gtcctgaggg aaagtaccca cgaccaagct aatgatgttg ttgacgttga
     7921 tggaaagtgc atcaagaacg caattacgta ctttagtcat gttacgccga tcatgttaat
     7981 ttgcagcatg catcaggcag gtcagggact tttgtacttc ctgtttcgat ttagttggca
     8041 atttaggtag caaacatgca gaccccgcac attcttatcg ttgaagacga gttggtaaca
     8101 cgcaacacgt tgaaaagtat tttcgaagcg gaaggctatg atgttttcga agcgacagat
     8161 ggcgcggaaa tgcatcagat cctctctgaa tatgacatca acctggtgat catggatatc
     8221 aatctgccgg gtaagaacgg tcttctgtta gcgcgtgaac tgcgcgagca ggcgaatgtt
     8281 gcgttgatgt tcctgactgg ccgtgacaac gaagtcgata aaattctcgg cctcgaaatc
     8341 ggtgcagatg actacatcac caaaccgttc aacccgcgtg aactgacgat tcgtgcacgc
     8401 aacctgctgt cccgtaccat gaatctgggt actgtcagcg aagaacgtcg tagcgttgaa
     8461 agctacaagt tcaatggttg ggaactggac atcaacagcc gttcgttgat cggccctgat
     8521 ggcgagcagt acaagctgcc gcgcagcgag ttccgcgcca tgcttcactt ctgtgaaaac
     8581 ccaggcaaaa ttcagtctcg tgctgaactg ctgaagaaaa tgaccggccg tgagctgaaa
     8641 ccacacgacc gtactgtaga cgtgacgatc cgccgtattc gtaaacattt cgaatctacg
     8701 ccggatacgc cggaaatcat cgccaccatc cacggtgaag gttatcgctt ctgtggtgat
     8761 ctggaagatt aatcggcttt accaccgtca aaaaaaacgg cgctttttag cgccgttttt
     8821 atttttcaac cttatttcca gatacgtaat tgatcgtcca ttgtaacttc tttactggct
     8881 ttcattttcg gcagtgaaaa cgcataccag tcgatattac gagtcacaaa catcatgccg
     8941 gccagcgcca ccaccagcac actggttccc aacaacagcg cgctatcggc agagttgagc
     9001 agtccccaca tcacaccatc cagcaacaac agcgcgaggg taaacaacat gctgttgcgc
     9061 cagcctttca ataccgcctg caaataaata ccgttcatta acgccccaat cagactggcg
     9121 attatccatg ccacggtaaa accgatatgt tcagaaagcg ccagcaagag caaataaaac
     9181 atcaccaatg aaagccccac cagcaaatat tgcattgggt gtaaacgttg cgcggtgagc
     9241 gtttcaaaaa caaagaacgc cataaaagtc agtgcaatca gcagaatggc gtacttagtc
     9301 gcccagtccg ttaattggta ttgatcggct ggcgtcgtca ctgcgacgct aaacgcgggg
     9361 aagttttccc agccggtatc attgcctgaa gcaaaacgct caccgagatt attagcaaac
     9421 cagctgcttt gccattgcgc ctgaaaacct gactcgctaa cttcccgttt ggctggtaga
     9481 aaatcaccta aaaaactggg atgcggccag ttgctggtta agggcatttc gctattacgc
     9541 ccggcaggca ccacagaaag atcgccggta ccgcttaaat tcagtgccat attcagctgc
     9601 aggttctgct tccgccagtc cccttcgggt aaagggatat gcacgccctg cccgccttgc
     9661 tctaacccgg taccgggttc aatggtcagt gccgttccgt taacttcagg cgctttcacc
     9721 acaccaatac cacgcgcatc cccgacgcta atcacaataa agggcttgcc taagatgata
     9781 tttggcgcgt tgagctcgct aagacgcgaa acatcgaaat cggcttttag cgttaaatca
     9841 ctgtgccaga cctgaccggt ataaatccct atcttgcgtt cttccacgtt ctgattgcca
     9901 tcaaccatca atgactcagg taaccaaaaa tggataaaac ttcgtttccg ctccacggtt
     9961 ttatcctctt cctgcaccgt ataaagctcg gtcacaggaa tagcgataag cggcccaacg
    10021 agtttttgcg gcccgctggt actttggcga atcgcatctt ccacatcgct acggtaatcg
    10081 gcacgttcga caatcacttg ccgaatcagc attatcggaa tcaacaacag caatactgca
    10141 ccaaacaagg tggtcatttt ccagaacagg ggggatttca acatagtctt ctcctttgca
    10201 atggcagcag gatacgaagg ctatgtggga agaatttgaa gctatgtgaa gtgacggtga
    10261 agtcgaagcg aggccagcac gccaccttcc tgcacgttgc gcagcgtgac ttcgccgtta
    10321 aacaaacggg cgacctcact gacgaacgcc aaccccagac cgctgctttt ttgcccattt
    10381 gcacgcggca aagagtaaaa gcgttcaaaa atacgtgaca gcgcgtagtc aggaatacca
    10441 ctaccggtat ccagcacctt aagggcgacg tgttcctgat ccacttcggc gcttagcgtt
    10501 atgcgaccgc tctcgggggt aaaatcgatg gcgttatcca gtaaattccc cagcgcctgc
    10561 tccagtaacg ccggttcagc agcaacatta acctcagtgg gcataacatg tagagtgatg
    10621 tttttttctg ccaactgcac ggtgcgcgct tcgctgacgc ggcgaaataa tgccgccaca
    10681 tcaacaacag tcagaacgac ttcctgacga ttctccagtc ttgcctggcg tagtaacgtt
    10741 tctaccaatg cctgcatacg cgcattttgc gtcagaatgt tgtcggtaaa acgagccacc
    10801 acttccggtg gcggaccttc gcgtaaaatt tccgccgcgc cacgaatcgc cgccagtggg
    10861 ctttttagct catgggttaa cgcataaaca tactgctcaa tatagttttt cccttccagc
    10921 ttcacgcgca tactttccag cgcctgcgca agcttacgca actcgctact gccgagttca
    10981 ggaagaggaa cgggcttatt gtcagtgacg gaatcggcat agcgagtgag ccgggcaatg
    11041 gagcggttga tccaccaaac catgcctgcg ccaatcacca gtgcaatccc cagcaaaatg
    11101 gcgctggccc ataaaattcg ccgctcgcta cgcttaatga ccggagccat cgccgcgttc
    11161 ggtttgccta cgctcaaaac gccaataagc cgcgagccgt ccataatcgg cgcggcaaca
    11221 tacatcaccg aactttcggg atcggcagga ttttgcaacg tgctgcgcgc accatactga
    11281 ccacgcaacg ttagccagac gtcattccag cgcgaataat cctgcccaac ggctttattt
    11341 gccgaatcga acaatacttt accctgcgaa tcggtcatat agacatgata ttcattgcgc
    11401 actttgttaa tgccaccgat attggcgcga aacggacgat gttgtagctg attaaacgcc
    11461 tgcgccagtt gcccatgcgt tgggtcccca gagagcaaat cgggacgcgc cagctccgcc
    11521 agcaacgttg cggtgtcgat caacgtcccc tccgttgctc ttcgcacgcc cggtttaact
    11581 tctttgacaa aaatagccag tacgaaccag gccgccaccg ccaccagtaa aaaatagccc
    11641 agcagcaacc gcatgccgat acgcattaca ggcccctcag gctatatccc atgccgcgat
    11701 gagtattaat cggtgaaaga tcggggttga tggcacgcag cttggcatgc aacgttttaa
    11761 tgtgggtatc aacggtgcga tcgtaggtgt cctgcgcatc ttcccacacg ctatccatca
    11821 gttgctggcg ggaccagacg cggcctggcg acttgagtaa cgtcttcagc aataaaaact
    11881 cataccgcgt cagcgttaat ggcgtgtcaa accagctgat ctgcgccgcg ggttcattca
    11941 attcaaaatg accaatacgg atgacgggag acggcgacga gaacttcttc acccgacgca
    12001 gtaaggtgcg caccctggcg cacacttcgc ggggtgaaaa cggtttagcc acatagtcgt
    12061 cagcgccaat ttccagccca agcaggcgat cgacctcttc acttcgggcc gtcaggaaca
    12121 gtacaggtaa cgccggatgg agcgccagta actggctgca caattcaaag ccgctgatat
    12181 caggcaaacc aacgtcgaga atcatgacgt cgggaaccag ctggcgagct ttatccagca
    12241 ccggcaagcc tcgctcaaag acctcgacgg caaaaccttc ctgctgcaac atgtagacca
    12301 gcgtgtcggc tatcccttgc tcatcttcca ctaaccagac cgtttcccgt tgtataaatc
    12361 gcctctgtta ttgccgccac ggcatgacag gaaccgcgct aatcgcgttt ttcggcgaac
    12421 cttctacaac tttgtcggag taagccagat aagcgagcgc gttgcgtttg gcgtcataaa
    12481 agcgcacgac ctgtaacgac ttaaagacca gggacgtgcg ttttttgaat actacctcgc
    12541 cctgagcttt gccgttttta atacgatccg acagttcaat cggcccgact tgctgacaag
    12601 aaatagccgc atcggaggta tcttccgcca gacccaatcc ccctttaata ccacctgttt
    12661 tcgcccggct cacataacag gtgacatttt tcacatcggg atcgtcaaag gcttccacaa
    12721 caattttgtg atccgggccg atcattttaa atacggtgtc gaccgaacca atctcttctg
    12781 catgagccaa tggccccagc attatcaggc ttaaagacag gatcaaatgc ttgtatttca
    12841 tattgttacc atttttatct attacacgag caattagttc gtcacggtaa ataacatatt
    12901 gattaagaac aaaatctcaa ttcttttatt tccgtcaagc cctaaaacat actctactaa
    12961 gaaaaaaaca ctgaatgcta aaacagcaaa aaatgctatt atccaattac ctgatgtcag
    13021 gtgctcgttg ttgaaaggat gaggatattt tatggatcag gccggcatta ttcgcgacct
    13081 tttaatctgg ctggaaggtc atctggatca gcccctgtcg ctcgacaatg tagcggcgaa
    13141 agcaggttat tccaagtggc acttacagag aatgtttaaa gatgtcactg gccatgctat
    13201 tggcgcgtat attcgtgctc gtcgtttgtc gaaatcggcg gtcgcactac gcctgactgc
    13261 gcgtccgatt ctggacatcg cgctgcaata ccgcttcgac tctcaacaga catttacccg
    13321 cgcattcaag aagcagtttg cccagactcc tgcactttac cgccgttctc ctgaatggag
    13381 cgcctttggt attcgcccgc cgctacgtct gggtgaattc acaatgccag agcacaaatt
    13441 tgtcaccctg gaagatacgc cgctgattgg tgttacccag agctactcct gttcgctgga
    13501 gcaaatctct gatttccgcc atgaaatgcg ttatcagttc tggcacgatt ttctcggcaa
    13561 cgcgccgacc attccgccag tgctctacgg cctgaatgaa acgcgtccga gtcaggataa
    13621 agacgacgaa caagaggtat tctataccac cgcgttagcc caggatcagg cagatggcta
    13681 tgtactgacg gggcatccgg tgatgctgca gggcggcgaa tatgtgatgt ttacctatga
    13741 aggtctggga accggcgtgc aggagtttat cctgacggta tacggaacgt gcatgccaat
    13801 gctcaacctg acgcgccgta aaggtcagga tattgagcga tactacccgg cagaagacgc
    13861 caaagcggga gatcgcccaa ttaatctgcg ctgtgaactg ctgattccta tccgccgtta
    13921 acgctgcagc tcatctaatg caggggcgtc cagatgcgag atgtcccctg cggtttcaac
    13981 gacccagcca gacgccagcc acaggctttc ctgataatcc acgcgcgaaa tagaacagtt
    14041 acgcagacgt aagcggcgcg ctgcccatgc tggtaatccg agaatcgtac tcaccagaca
    14101 tcccagtgca ataccatggc tcaccagcag cggtcggctt ccctgcggta agtcccggca
    14161 agattccagt gccgcattga cgcgatcgct gagctcctgc attgactcgc cttcaggaat
    14221 acgcccgtca acggtgccat tgaccagctg ccgacgccag ttctcttctt cttcggtcag
    14281 agaatcgata tgtctttttt ccagcacacc catgtttaat tcacgcaggc gagaatcaaa
    14341 gatgatgtca cagccgcagg cctgggcgat gatttccgcc gtacgccggg tgcgtcctaa
    14401 atcgctactg ataatatgcg taatgccaag ctctttggca cgggttgcca cctgcatcgc
    14461 ctgttgctca cctttggcgg tcagcgggct gtcagactgg ccctgaatac gtcgctcggc
    14521 gttccactgc gtttcaccgt ggcggactag gtatacctgt aacatgcttt ttttccgtat
    14581 actgctgtaa cgttaatttt ctgagtaatg ctgattatgc accaagttgt ctgtgcgacc
    14641 accaatcccg ctaaaattca ggccattctg caggcatttc acgagatctt cggcgaagga
    14701 tcctgccata ttgcatccgt tgccgtcgag agcggtgtac cggaacagcc ctttggcagt
    14761 gaggaaacgc gcgctggcgc acgaaatcgg gtagcaaatg cccgccgttt acttccagag
    14821 gctgattttt gggtggcgat tgaagctggc atcgatggtg acagcacttt cagttgggtg
    14881 gtgattgaaa acaccagcca gcgcggcgag gcgcgttcgg ctactttgcc gttacctgcg
    14941 gtgattctgc agaaagtgcg tgaaggtgag gcgcttggtc ccgtgatgtc gcgttatacc
    15001 ggtattgatg agattggtcg taaggaaggg gcgatcggcg tgtttaccgc cgggaaactc
    15061 actcgcgcca gcgtctatca ccaggcggtg atcctggcgc tgagtccgtt tcacaatgcc
    15121 gtgtatcagg cattgtagga cggataaggc gttcacgccg catccggcat tcggtgcacg
    15181 atgcctgatg cgacgctgcc gcgtcttatc aggcctacaa aatcaatcgc ttttcagcaa
    15241 cacctcttcc agccactggc gcagctccac gggcgcggct ttcaggctgt tagatccacg
    15301 cgtaatcgtc gcgatgcccg cgccgagttc attttttaac tcacgctgac tcatttcgcc
    15361 acgcaacagc tcttcgacaa tacgcacgcg agtccccaac gcttcgcgct catctggcgt
    15421 cagcatcagg tttaacaacg gtaaatggag atcgttttgg taggcattct taagcaggtc
    15481 gacaaaacgt aaccactcct ggtgacgctg ttctgccatc gctgctgaat agggtgattg
    15541 ttgggccata atatgtcgcc attgttagcg ggggaagcaa aatgcctccc ccggttgtac
    15601 tcgctaaaga gtacgatagc atatcataaa cgtgcggatc agtaacgacg tccccattcc
    15661 gtggcgctca tcaacgtcgg tttatccccc atgaaataac ggtagtaagc gtcataagcc
    15721 agcacgttct tcacataacc gcgcgtctcg gagaacggaa tactctcgac aaatgccaca
    15781 gcgtcgatac gcccggcgct gttgccaagc caggttcgca cccgtccagg tccggcgtta
    15841 taagctgctg aggagaaaat acggttattg ccaaactgct gataaacata ttgcaggtaa
    15901 ctggtgccaa tgttgatatt cgtttccgga tccagcaatt gcccagggct gctataacca
    15961 ggaatagaga acatcttcac cgtatgggtc gctgtaccag gcataatctg catcaggccg
    16021 ctggccccta ccggtgattt cactttcgga ttccaggcgc tctcctgacg ggcaatcgcc
    16081 atcgcatagc tttgcgggat ctctttccca ctggtgtaac gtttgaaaag atcgttgtaa
    16141 gccagcggga atcgctcttc cagatgatcc caaagcttcc cggcgatcgt tgcctgaacg
    16201 ctaagatccc accattggtt attgaaagca taccgagcca gttgagcctg ctctgttttt
    16261 gacttgctct tcaccagatt ggcccactcg ctacgcgcgg tgttatcgag attccagtac
    16321 atcaactcgc gcacgcgcgc catctccggc ccctgagtca gggcgctgtc aacattctgc
    16381 ggcgctttat caatcttcag ctcatactct tctccgatgc gttgtgctgc aaccatcggg
    16441 tagaaaccac gctgttgcat gagttgatgc aaaatctctt tcgcttcagc ttcacgtccg
    16501 cgttccagca ataaatccgc ctgccagtaa cgccattcat ctttctcttt tgcttccatc
    16561 ggcagacgcg ccagccaggt attcaggccg cgacgatcgc cggtgccaag tgccattcgc
    16621 acacggcgtt caatcaacga cgtggattgc gagcgcataa tggcgtcatc gcgccatttc
    16681 gcctgctcgt cggtgacatc gttgcccatc aaacgccagg cgacgatatc gcgcagctcc
    16741 tgaatctgat cttcattaag ctgctgcgcc tgggcaagcg acgggatcat cagccgtgca
    16801 ttttcagcat cctgccgcgc cacactggca aacgccaccg ctgccatttg acgggtaaaa
    16861 tcggtcgctc cggttgtacg cgcgaaggtc agtaccgtat tagggttgtt cgccagtgaa
    16921 atgattgccg aggcgatagt ctggtaatcg gcaggcatct gccctgccag cactgttacc
    16981 aggccagtgt tacccgcttt catcgccaga cggatacgct ctaaatacgc cagcggatct
    17041 tgtttacctg acgcacgcca gacgctaaat aacttgtcac aggcgttagg ctggctcttg
    17101 ccggttagcc acagctcttt cgccccttgc caggcttctt cactctgccc ggtgttccat
    17161 ttcgcatagt agtaattaca ttgcgcttcg gtagttccgg gcttttccgg gctaaaggct
    17221 aacaagccac gccagtcttc acgccgcgcc agttcattga cgaaacgaga ttgcagcgtg
    17281 cgagcgggag gaagcgtggg gttagcgcga acaaagttag tgaccgtcac cgccggttga
    17341 ttcatcagat catcggtgat ctggcggtat tccaggtagg gataaagcgg ataatccttc
    17401 agtccaggca tcatttgttc gaccacatcc atttgtcgat tatcccaggc ctgcttgatt
    17461 tgcgcgtaac ggctacgctg ctcatccagt gagtcggctc gcgccacgct gctgaccgtc
    17521 agcagacaga caccggcagc caacagccgc caggtaactt gtttggcttt ttccacaagc
    17581 gcatcctcta agtgtaaata catcaatgca gcgtcatgcc gcgtaataga tttatgctaa
    17641 ccagtcattg ccgtttacgc cacgttacgg acactttttt acttttactg cgaaggtgat
    17701 cgaccaactg ggattaggcg gggaaaaagg ctacacttcg cctttgaaaa ctcatcatca
    17761 cgataaacat agaggcgaag tccaacgtgg ctcaattcgt ttataccatg catcgtgtcg
    17821 gcaaagttgt tccgccgaaa cgtcatattt tgaaaaacat ctctctgagt ttcttccctg
    17881 gggcaaaaat tggtgtcctg ggtctgaacg gcgcgggtaa gtctaccctg ctgcgcatta
    17941 tggcaggcat tgataaagac atcgaaggtg aagcgcgtcc gcagccagac atcaagattg
    18001 gttacctgcc gcaggaaccg cagctgaacc cggaacacac cgtgcgtgag tccattgaag
    18061 aagcggtttc tgaagtggtt aacgccctga aacgcctgga tgaagtgtat gcgctgtacg
    18121 ccgatccgga tgccgatttt gacaagctgg ccgctgaaca aggccgtctg gaagagatca
    18181 ttcaggctca cgacggtcat aacctgaacg tacagctgga gcgtgcggcg gatgcgctac
    18241 gtctgccgga ctgggacgcg aaaatcgcta acctctccgg tggtgagcgt cgtcgcgtag
    18301 cgttgtgccg cctgctgctg gaaaaaccag acatgctgct gctcgacgaa ccgaccaacc
    18361 acctggatgc cgaatccgtg gcctggctgg aacgcttcct gcacgacttc gagggcaccg
    18421 tggtggcgat tacccacgac cgttacttcc tcgataacgt tgcaggctgg atcctcgaac
    18481 ttgaccgcgg tgaaggtatt ccgtgggaag gcaactactc ctcctggcta gagcagaaag
    18541 atcagcgcct ggcgcaggaa gcttcacaag aagcggcgcg tcgtaagtcg atcgagaaag
    18601 agctggagtg ggtacgtcag ggaactaaag gccgccagtc gaaaggtaaa gcacgtctgg
    18661 cacgctttga agagctgaac agcaccgaat atcagaaacg taacgaaacc aacgaactgt
    18721 ttattccacc tggaccgcgt ctgggcgata aagtgctgga agtcagcaac ctgcgtaaat
    18781 cctacggtga tcgcctgctg attgatgacc tgagcttctc gatcccgaaa ggggcaatcg
    18841 tcgggatcat cggtccgaac ggcgcgggta aatcgaccct gttccgtatg atctctggtc
    18901 aggaacagcc ggacagcggc accatcactt taggtgaaac ggtgaaactg gcatcggttg
    18961 atcagttccg tgactcaatg gataacagca aaaccgtttg ggaagaagtt tccggcgggc
    19021 tggatattat gaagatcggc aacaccgaga tgccaagccg cgcctacgtt ggccgcttta
    19081 actttaaagg ggttgatcag ggtaaacgcg ttggtgaact ttccggtggt gagcgcggtc
    19141 gtctgcatct ggcgaagctg ctgcaggttg gcggcaacat gctgctgctc gacgaaccaa
    19201 ccaacgacct ggatatcgaa accctgcgcg cgctggaaaa cgccctgctg gagttcccgg
    19261 gctgtgcgat ggttatctcg cacgaccgtt ggttcctcga ccgtatcgcc acgcacatcc
    19321 tggactacca ggatgaaggt aaagttgagt tcttcgaagg taactttact gagtacgaag
    19381 agtacaagaa acgcacgctg ggcgcagacg cactggagcc gaagcgtatc aagtacaagc
    19441 gtattgcgaa gtaatgcgta aaatgccgga tgcggcgtga acgccttatc cggcctacaa
    19501 accaagaaat ttcaatacgt tgtgaatctc caggcctgat aagacgcggt aagcgtcgca
    19561 tcaggcattg agcaccgaat gccggatacg gcgtgaacgc cttttccggc ctacaatagc
    19621 cttagtatcc gcaatttcgt agcgggtcac ccgtgctgat tcttttaaac cttgtttaat
    19681 ctcgacagcc tcttccagag aggttttcaa ctcatcaaaa aacttatttt atacctcgcc
    19741 tttgagccgt ttcatcgcgg ttatctctgc tcccccatca tctcccgcac cagctccacg
    19801 cagcgcagga aacggctgtc ataatcgtcc tcttcaaccc gcacgaattc gatattgttc
    19861 tcttccagca tctccaccag caagttctgg aactctttgc gatccaccga actgccgagg
    19921 ctgcgtaaac catccgccac ccacggcgtg ttgttctcca gcaggatcac cagatcgaaa
    19981 cggtattcat caatcaacgc ctgtacgaac ggatgctcac gcccttcgta ctttttgcag
    20041 aacgcctggg tagtgacaaa atcagtgtca ataaacgcca ctttattggc atatttcact
    20101 gcaaaatcaa tgtattgtgc gtggcccagc gcgattttat cgtaatcgga atactgcaat
    20161 gcgatctcat caccgccgag gtgtgaaaag acataatcgc gaccatattc ccacgcactg
    20221 gtggtattga agatattggc aagtttgttt accagggtgg atttaccgct cgactcgcca
    20281 ccaaggatcg ccacggtacg tacaaagaac ggcttcactt ccgtaggaat atattcccag
    20341 tagcggaacg ggttttcgcg gatctgcgca ccgctgatac tcataaaggt acgtttcgga
    20401 tcgaccagca ccgtatcgat ccccagatgt tccatatact gtggcgcatc ggcttcttcc
    20461 gaggtgtaga tcaggtccgg ctgaatcccc ttttcagcca taaacttttt gatgccgttg
    20521 ctccacacat cccagccgtg cggatacggc tccatgccct cctcgttgaa agcatgaatg
    20581 cgaatatttt tctgatattt aaaagtttgt aataaccagc gcagacgatc cggcaccgtg
    20641 ggctgctgcg acatggcgct gtcttcaaac aacgcgcggt cgcgggtatc gtcaaaaccc
    20701 ataatgatat gcagctcgtc aacctggcta caggcgcgct ggataaggta gatatgtccg
    20761 gtatgcagcg ggtagaactt accgaatacg acaccaatgg ttttcttctg tcggggaaat
    20821 tcaagcccca aaaaacggtg caacgcctcc agcttttgcg cgctggggct tttaattttg
    20881 gcattcagta actggcttaa ataccctttg gtcataccgc tggcatcagc tacctgctgt
    20941 agcgtgcagc cctgttgctt gatggcagtt ttcaggtaat caaatgacga catatctccc
    21001 tccgtatctc tcattataag tcgtcgaaca cgctaagcgc gtcggagagt tttttaacgc
    21061 caaaaatctg catcccttcc ggcgcttttt tcggtacgtt agccgccgga acaatcgccc
    21121 ggcgaaaacc gtgtttcgcc gcttctgaaa ttcgttcctg accgctgggc accgggcgga
    21181 tctcccctgc cagcccgact tcaccaaaca ccaccagatc ctgtggcagc ggtctgtcac
    21241 gcaggctgga aaccatcgcc agcagtaacg ctaaatcggc actggtttcg gttaccttca
    21301 cgccgccgac cacgttcaca aatacatcct gatcggccat ttgcagacca ccgtgacggt
    21361 gcaagacagc cagcaggatt gccagacggt tttgttccag ccccactgcc acgcggcgcg
    21421 gattcgccat catcgagtga tcgaccagcg cctgaatctc caccagcaac ggacgcgttc
    21481 cttcccacac caccatcacg gagctgccgg aggtcacttc atctccgcga cttaagaaaa
    21541 ttgccgaagg gttgctgact tcacgcagcc cctgttcggt catcgcgaag acgcccagct
    21601 cattcaccgc gccgaagcgg tttttatggc tgcgcaaggt gcgaaaacgg gagtcggcat
    21661 caccatccag aagcaccgaa cagtcgatac agtgttccag cactttaggg ccagccagcg
    21721 agccatcttt ggttacgtgc ccaaccatga caatcgccac accgcgcgtt ttggcgaagc
    21781 gcgtcagata agccgccgtt tcacgcacct gcgccacgct accaggcgat gattgtacat
    21841 ccgccatatg catcacctgg atcgagtcaa ttaccatcag tttcggttgc tcttcttcgg
    21901 caatcaggca gatctgttcg atgctggttt ccgacaacat attgagattg tcagtcggca
    21961 ggccaaggcg atgagcgcgc attgccacct gttgcagcga ctcttcgcca gtgacataca
    22021 gcgttttcat ctgctgggcc agtttgcaca gcgtttgcag tagcagcgtg gatttccccg
    22081 cacctgggtt accgccaatc agaatggcgc ttcccggcac cacgccgccg cctagtacgc
    22141 ggtcgaactc tttaaatccg gtggaaaaac gcggcagctc ttcaaggctg atatcggaga
    22201 gtttctggac ttttgccacc ccggcgctac cggcatagcc gctgagacgc tcgttacgcg
    22261 ccaccgttgg cgacgcagca agacgcacct cggtgatggt gttccaggca tgacaggcac
    22321 tgcactgccc ctgccagcgc ggataatcgg ccccgcattc attacaaaca aaggcgcgtt
    22381 ttggagcttt tgccacggtg tacctcgtta atgctgtgcc gcccgcagga tggcgggcga
    22441 gcaattactt ctgattcagg ctgccagaga ggatgcagaa tacccccatc aggtcagcgt
    22501 gacggatggt gacttccgcc ttttcattca cttttggctt ggcatggtag gcaatcccca
    22561 gccctgctgc tttgatcatc ggcaggtcat tagctccatc gccaatcgcc acggtctgcg
    22621 ccagcgggat ttcatactcc tgcgcgaggc gagtcaaagt tttcgctttg tactgcgcgt
    22681 ctacgatgtc gccgatcaca ttgccggtaa atttaccgtc catgatctcc agttcattgg
    22741 ctaccacggc ggtcaggcgc agcttgtcgc gcagatattc agcaaagaaa gtaaagccgc
    22801 cggaggcaat cgccactttc cagcccagcg tttccagctt gagcaccagt tgcgttaagc
    22861 ctggcatcag cggcagattt tcacgcacct gttgcagaat attggcgtca gcgcctttca
    22921 gcgtcgccac acggctgcgc aggctggcgg taaaatcgag ttcgccgcgc atcgcccgtt
    22981 cggttacttc cgccaccatc tcgcccgttc cggccagttt ggcaatttca tcaatacatt
    23041 caatctggat ggcggtggaa tccatgtcca tcaccagcaa acccggcgtg cgcaggtgcg
    23101 ggattttccc cagcggggcg acatccagtt gcgcttcatg ggccaggcgc gtagcccgtg
    23161 cggtgagtga acctgccaga cgaatcacct gataatcttc cacgcaccag gcggcaacaa
    23221 tcaccatcgc cgcacccagt ttgctctggt attgggtcag acgctgttta tccagcccac
    23281 gaccatacag cagccagccg ctacgacctg cgtggtaatc cagtggcatc acttcatcac
    23341 cacttaatga aagaggcaga ccaggccata aagagacatc ttcaggcagg tcgcaccagg
    23401 taatgttagg cattaaggat cctgtaaaat cgttcgaagc agggaaaata acgcatgagg
    23461 ctaccttgta tccattgctt ctggcaacat taagtctcaa attttcaaag ggtggaagat
    23521 ggctcgcaca aaactgaaat tccggctgca tcgggcagtg attgtcctgt tctgtcttgc
    23581 cttgttagtg gcgctgatgc agggagcgtc atggtttagt caaaaccacc agcgacaacg
    23641 taatccacag ctggaagaac tggcccgcac cctggcgcgt caggtaacgc tgaacgttgc
    23701 accgctgatg cgtaccgact caccggatga aaaacgcatt caggcgatcc tcgatcagtt
    23761 aacggatgaa agccgtatcc tcgacgcggg tgtgtatgac gaacaaggcg atcttatcgc
    23821 acgttctggc gaaagcgtcg aagtgcgcga ccggctggcg ctcgacggta aaaaagcggg
    23881 cggctatttt aaccagcaga ttgtcgaacc aattgccggg aaaaacggac cgctcggcta
    23941 tctgcgcctg acgctcgaca cccatacgct cgccaccgaa gcccaacagg tggataacac
    24001 cactaacatt ttacgcctga tgttgctgct ttcactggca atcggcgtag tgctgacccg
    24061 cacgctgcta cagggtaaac gtacccgctg gcagcaatcg cccttcctgt taaccgccag
    24121 caaaccggtg ccggaagagg aagaaagcga gaaaaaagag tgacccatta ctacaagaaa
    24181 ggaaatcgtt atgtccacat tacgcctgct catctctgac tcttacgacc cgtggtttaa
    24241 cctggcggtg gaggagtgta tttttcgcca gatgcccgcc acgcagcgcg ttctgtttct
    24301 ctggcgcaat gccgacacgg tagtgattgg tcgcgcgcag aacccgtgga aagagtgtaa
    24361 tacccggcgg atggaagaag ataacgtccg cctggcacgg cgcagtagcg gtggcggcgc
    24421 ggtgttccac gatctcggca atacctgctt tacctttatg gctggcaagc cggagtacga
    24481 taaaaccatc tccacgtcga ttgtgctcaa tgcgctgaac gcgcttggcg tcagcgccga
    24541 agcgtccggg cgtaacgatc tggtggtgaa aaccgccgaa ggcgaccgca aagtctcagg
    24601 atcggcctat cgcgaaacca aagatcgtgg cttccaccac ggcaccttgc tgctcaatgc
    24661 cgaccttagc cgcctggcaa actatctcaa tccggataaa aagaaactgg cggcgaaagg
    24721 cattacctca gtgcgttccc gcgtgaccaa cctcaccgag ctgctgccgg ggatcaccca
    24781 tgagcaggtt tgcgaggcca taaccaaggc ctttttcgcc cattatggcg agcgtgtaga
    24841 agcggaaatc atctccccgg acaaaacgcc agacttgcca aacttcgccg aaatctttgc
    24901 ccgtcagagt agctgggaat ggaacttcgg tcaggctccg gcattctcgc atctgctgga
    24961 tgaacgcttt agctggggcg gcgtggaact gcatttcgac gttgaaaaag gccatatcac
    25021 ccgcgcccag gtgtttaccg acagcctcaa ccccgcgccg ctggaagccc tcgccgggcg
    25081 actgcaaggc tgcctgtacc gcgcggatat gctgcaacaa gagtgcgaag cgctgttggt
    25141 tgacttcccg gaccaggaaa aagagctacg ggagttgtcg acgtggatag cgggggcggt
    25201 aaggtaactc gctgattaaa ataccaaagg aagggaatat gatcgatctg gaaaaccagg
    25261 agcgggagat tatcaattta atgttaagcc agcgtatttc ctggctagcc gccgtgcgta
    25321 tcaggcataa attatcgctt gctgaagtaa gtaaaatgtt aggtatctcg attaattctc
    25381 taaaatagat cgaaaagacg gaacggttta gctcaaacat caaaagcaaa atggcagaaa
    25441 tttatggttg tccaccagag ttgctgatat gcccttcctg gatgacggct gaacataaat
    25501 gaatagatt
//
LOCUS       DADMJB010000043        25242 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.043, whole genome shotgun sequence.
ACCESSION   DADMJB010000043 DADMJB010000000
VERSION     DADMJB010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25242)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25242)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25242
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.043"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..403)
                     /locus_tag="JN078_001599"
     CDS             complement(<1..403)
                     /locus_tag="JN078_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HAY9040845.1"
                     /translation="MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFY
                     QVCHPDGLADALWGTIVGYGTFAVIYWGYRILRHKEGLGYGDVKFLAALGAWHSWAFL
                     PRLVFLAASFACGAVVIGLLMRGKESLKNPLP"
     gene            782..1093
                     /gene="rpsJ"
                     /locus_tag="JN078_001600"
     CDS             782..1093
                     /gene="rpsJ"
                     /locus_tag="JN078_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014268624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HAY9040846.1"
                     /translation="MQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPT
                     RKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL
                     G"
     gene            1126..1755
                     /gene="rplC"
                     /locus_tag="JN078_001601"
     CDS             1126..1755
                     /gene="rplC"
                     /locus_tag="JN078_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000579825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HAY9040847.1"
                     /translation="MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDG
                     YRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFA
                     DVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKK
                     MAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAVKA"
     gene            1766..2371
                     /gene="rplD"
                     /locus_tag="JN078_001602"
     CDS             1766..2371
                     /gene="rplD"
                     /locus_tag="JN078_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010304939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HAY9040848.1"
                     /translation="MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTR
                     AQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYR
                     GALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDENLFLA
                     ARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA"
     gene            2368..2670
                     /gene="rplW"
                     /locus_tag="JN078_001603"
     CDS             2368..2670
                     /gene="rplW"
                     /locus_tag="JN078_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007891652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HAY9040849.1"
                     /translation="MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIK
                     AAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE"
     gene            2688..3509
                     /gene="rplB"
                     /locus_tag="JN078_001604"
     CDS             2688..3509
                     /gene="rplB"
                     /locus_tag="JN078_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HAY9040850.1"
                     /translation="MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRN
                     NNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERR
                     YILAPKGLKAGDQIQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGT
                     YVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRP
                     TVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSK"
     gene            3526..3804
                     /gene="rpsS"
                     /locus_tag="JN078_001605"
     CDS             3526..3804
                     /gene="rpsS"
                     /locus_tag="JN078_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HAY9040851.1"
                     /translation="MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNM
                     IGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK"
     gene            3819..4151
                     /gene="rplV"
                     /locus_tag="JN078_001606"
     CDS             3819..4151
                     /gene="rplV"
                     /locus_tag="JN078_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000447526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HAY9040852.1"
                     /translation="METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAA
                     VLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSH
                     ITVVVSDR"
     gene            4169..4870
                     /gene="rpsC"
                     /locus_tag="JN078_001607"
     CDS             4169..4870
                     /gene="rpsC"
                     /locus_tag="JN078_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000529946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HAY9040853.1"
                     /translation="MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLT
                     KELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN
                     IAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGA
                     EIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPE
                     KPAAQPKKQQRKGRK"
     gene            4883..5293
                     /gene="rplP"
                     /locus_tag="JN078_001608"
     CDS             4883..5293
                     /gene="rplP"
                     /locus_tag="JN078_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HAY9040854.1"
                     /translation="MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTAR
                     QIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVL
                     YEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM"
     gene            5293..5484
                     /gene="rpmC"
                     /locus_tag="JN078_001609"
     CDS             5293..5484
                     /gene="rpmC"
                     /locus_tag="JN078_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000644743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HAY9040855.1"
                     /translation="MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLK
                     QVRRDVARVKTLLNEKAGA"
     gene            5484..5738
                     /gene="rpsQ"
                     /locus_tag="JN078_001610"
     CDS             5484..5738
                     /gene="rpsQ"
                     /locus_tag="JN078_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006817275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HAY9040856.1"
                     /translation="MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKL
                     HVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL"
     gene            5903..6274
                     /gene="rplN"
                     /locus_tag="JN078_001611"
     CDS             5903..6274
                     /gene="rplN"
                     /locus_tag="JN078_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013975775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HAY9040857.1"
                     /translation="MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIK
                     EAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGP
                     VTRELRSEKFMKIISLAPEVL"
     gene            6285..6599
                     /gene="rplX"
                     /locus_tag="JN078_001612"
     CDS             6285..6599
                     /gene="rplX"
                     /locus_tag="JN078_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000729185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HAY9040858.1"
                     /translation="MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKK
                     HQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSET
                     IK"
     gene            6614..7153
                     /gene="rplE"
                     /locus_tag="JN078_001613"
     CDS             6614..7153
                     /gene="rplE"
                     /locus_tag="JN078_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HAY9040859.1"
                     /translation="MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAI
                     ADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFER
                     LITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTA
                     KSDEEGRALLAAFDFPFRK"
     gene            7168..7473
                     /gene="rpsN"
                     /locus_tag="JN078_001614"
     CDS             7168..7473
                     /gene="rpsN"
                     /locus_tag="JN078_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HAY9040860.1"
                     /translation="MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNA
                     VLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW"
     gene            7507..7899
                     /gene="rpsH"
                     /locus_tag="JN078_001615"
     CDS             7507..7899
                     /gene="rpsH"
                     /locus_tag="JN078_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HAY9040861.1"
                     /translation="MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEG
                     FIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIA
                     VVSTSKGVMTDRAARQAGLGGEIICYVA"
     gene            7912..8445
                     /gene="rplF"
                     /locus_tag="JN078_001616"
     CDS             7912..8445
                     /gene="rplF"
                     /locus_tag="JN078_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HAY9040862.1"
                     /translation="MSRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVK
                     HADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNV
                     INLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGK
                     GVRYADEVVRIKEAKKK"
     gene            8455..8808
                     /gene="rplR"
                     /locus_tag="JN078_001617"
     CDS             8455..8808
                     /gene="rplR"
                     /locus_tag="JN078_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HAY9040863.1"
                     /translation="MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNG
                     SEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGR
                     VQALADAAREAGLQF"
     gene            8823..9326
                     /gene="rpsE"
                     /locus_tag="JN078_001618"
     CDS             8823..9326
                     /gene="rpsE"
                     /locus_tag="JN078_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004106339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HAY9040864.1"
                     /translation="MAHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNG
                     RVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEG
                     TGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKS
                     VEEILGK"
     gene            9330..9509
                     /gene="rpmD"
                     /locus_tag="JN078_001619"
     CDS             9330..9509
                     /gene="rpmD"
                     /locus_tag="JN078_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012147215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HAY9040865.1"
                     /translation="MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAI
                     RGMINAVSFMVKVEE"
     gene            9513..9947
                     /gene="rplO"
                     /locus_tag="JN078_001620"
     CDS             9513..9947
                     /gene="rplO"
                     /locus_tag="JN078_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011095501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HAY9040866.1"
                     /translation="MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGG
                     GVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIG
                     IQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE"
     gene            9955..11286
                     /gene="secY"
                     /locus_tag="JN078_001621"
     CDS             9955..11286
                     /gene="secY"
                     /locus_tag="JN078_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004868351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HAY9040867.1"
                     /translation="MAKQPGLDFQSAKGGLGELKRRLLFVIGALIVFRIGSFIPIPGI
                     DAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQLLTVVHPTL
                     AEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTA
                     VVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFL
                     VLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIP
                     AIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPLYVLLYASAIIFFCFFYTA
                     LVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMR
                     DAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKANLKGYGR"
     gene            11318..11434
                     /gene="rpmJ"
                     /locus_tag="JN078_001622"
     CDS             11318..11434
                     /gene="rpmJ"
                     /locus_tag="JN078_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020322760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HAY9040868.1"
                     /translation="MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG"
     gene            11581..11937
                     /gene="rpsM"
                     /locus_tag="JN078_001623"
     CDS             11581..11937
                     /gene="rpsM"
                     /locus_tag="JN078_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018356918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HAY9040869.1"
                     /translation="MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVK
                     ISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRT
                     KTNARTRKGPRKPIKK"
     gene            11954..12343
                     /gene="rpsK"
                     /locus_tag="JN078_001624"
     CDS             11954..12343
                     /gene="rpsK"
                     /locus_tag="JN078_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HAY9040870.1"
                     /translation="MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGW
                     ATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNA
                     AGFRITNITDVTPIPHNGCRPPKKRRV"
     gene            12377..12997
                     /gene="rpsD"
                     /locus_tag="JN078_001625"
     CDS             12377..12997
                     /gene="rpsD"
                     /locus_tag="JN078_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HAY9040871.1"
                     /translation="MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR
                     KPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVV
                     YRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE
                     LAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK"
     gene            13023..14012
                     /gene="rpoA"
                     /locus_tag="JN078_001626"
     CDS             13023..14012
                     /gene="rpoA"
                     /locus_tag="JN078_001626"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HAY9040872.1"
                     /translation="MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALR
                     RILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTL
                     NKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIH
                     SEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIR
                     RAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIH
                     YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIADE"
     gene            14053..14436
                     /gene="rplQ"
                     /locus_tag="JN078_001627"
     CDS             14053..14436
                     /gene="rplQ"
                     /locus_tag="JN078_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HAY9040873.1"
                     /translation="MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKEL
                     RRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGF
                     RAGDNAPMAYIELVDRSEKAEAAAE"
     gene            14543..14911
                     /locus_tag="JN078_001628"
     CDS             14543..14911
                     /locus_tag="JN078_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1992 domain-containing protein"
                     /protein_id="HAY9040874.1"
                     /translation="MWLLDQWAERHIAEAQAKGEFDNLAGSGEPLILDDDSHVPPELR
                     AGYRLLKNAGCLPPELEQRREAIQLLDILRGIRHDDPQYQEVSRRLSLLELKLRQAGF
                     STDFLRGDYADKLLDKINDN"
     gene            14922..15347
                     /gene="zntR"
                     /locus_tag="JN078_001629"
     CDS             14922..15347
                     /gene="zntR"
                     /locus_tag="JN078_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn(2+)-responsive transcriptional regulator"
                     /protein_id="HAY9040875.1"
                     /translation="MYRIGELAKMAEVTPDTIRYYEKQQMMEHEVRTEGGFRLYTESD
                     LQRLKFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQS
                     MQRSLQRLNDACCGTAHSSVYCSILEALEQGASGVKSGC"
     gene            15403..15621
                     /gene="arfA"
                     /locus_tag="JN078_001630"
     CDS             15403..15621
                     /gene="arfA"
                     /locus_tag="JN078_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome alternative rescue factor ArfA"
                     /protein_id="HAY9040876.1"
                     /translation="MSRYQHTKGQIRDNAIEALLHDPLFRQRVEKNKKGKGSYMRKGK
                     HGNRGNWEASGKKVNHFFTTGLLLSGAC"
     gene            complement(15618..16028)
                     /gene="mscL"
                     /locus_tag="JN078_001631"
     CDS             complement(15618..16028)
                     /gene="mscL"
                     /locus_tag="JN078_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HAY9040877.1"
                     /translation="MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPP
                     LGLLIGGIDFKQFAVTLRDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKL
                     NRKKEEPAAAPAPTKEEVLLAEIRDLLKEQNNRS"
     gene            complement(16158..17534)
                     /gene="trkA"
                     /locus_tag="JN078_001632"
     CDS             complement(16158..17534)
                     /gene="trkA"
                     /locus_tag="JN078_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004125888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HAY9040878.1"
                     /translation="MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRTLQDKFD
                     LRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSP
                     DYVRDADKLFHSDAVPIDHLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKA
                     YYGGPLIGNALSTMREHMPHIDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHI
                     RAVMSELQRLEKPYKRIMLVGGGNIGAGLARRLEKDYSVKLIERNQQRAAELAEKLQN
                     TIVFFGDASDQELLAEEHIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRA
                     YVDLVQGSVIDIAISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTS
                     RVVGRVIDEIKLPPGTIIGAVVRGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERL
                     FQPSPFFL"
     gene            complement(17556..18845)
                     /gene="rsmB"
                     /locus_tag="JN078_001633"
     CDS             complement(17556..18845)
                     /gene="rsmB"
                     /locus_tag="JN078_001633"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HAY9040879.1"
                     /translation="MKKQRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALL
                     QELCFGVLRTLSQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAET
                     VEGAIAIKRPQLKGLINGVLRQFQRQQEELLAKFNASDARYLHPSWLLKRLQKAYPEQ
                     WQSIVEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVH
                     ALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAV
                     DIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH
                     PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQR
                     TADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIKK"
     gene            complement(18891..19838)
                     /gene="fmt"
                     /locus_tag="JN078_001634"
     CDS             complement(18891..19838)
                     /gene="fmt"
                     /locus_tag="JN078_001634"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HAY9040880.1"
                     /translation="MSESLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRG
                     KKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVADLQADVMVVVAYGLILPKAVLEM
                     PRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPIT
                     AEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWS
                     LSAAQLERYIRAFNPWPMSWLEIERQPVKVWKASVIDTATNAAPGTILEANKQGIQVA
                     TGDGILNLLSLQPAGKKAMSAQDLLNSRREWFVPGNRLA"
     gene            complement(19853..20362)
                     /gene="def"
                     /locus_tag="JN078_001635"
     CDS             complement(19853..20362)
                     /gene="def"
                     /locus_tag="JN078_001635"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HAY9040881.1"
                     /translation="MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEG
                     IGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVP
                     RAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVE
                     KLDRLKARA"
     gene            20492..21616
                     /gene="dprA"
                     /locus_tag="JN078_001636"
     CDS             20492..21616
                     /gene="dprA"
                     /locus_tag="JN078_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HAY9040882.1"
                     /translation="MVDTDIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGL
                     TLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSEFYPPQLLATTDYPGALFVEGEL
                     YALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
                     GVSIAVLGNGLNTIHPRRHARLATSLLEHGGALVSEFPLDVSPLAYNFPRRNRIISGL
                     SKGVLVVEAALRSGSLVTARCALEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEP
                     EEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQP
                     VPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV"
     gene            21588..22061
                     /locus_tag="JN078_001637"
     CDS             21588..22061
                     /locus_tag="JN078_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF494 domain-containing protein"
                     /protein_id="HAY9040883.1"
                     /translation="MFDVLMYLFETYIHTEAELRVDQDKLEQDLTDAGFDREDIYNAL
                     LWLEKLADYQEGLTEPMQLASDPLSMRIYTPEECERLDASCRGFLLFLEQIQVLNLEI
                     REMVIERVLALDTAEFDLEDLKWVILMVLFNIPGCENAYQQMEELLFEVNEGMLH"
     gene            22090..22632
                     /locus_tag="JN078_001638"
     CDS             22090..22632
                     /locus_tag="JN078_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040884.1"
                     /translation="MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYV
                     RPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCSNYPECEHTELIDKPDET
                     AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKT
                     AQGVKHFCASKQCGKPVSAE"
     gene            22637..23209
                     /gene="tsaC"
                     /locus_tag="JN078_001639"
     CDS             22637..23209
                     /gene="tsaC"
                     /locus_tag="JN078_001639"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase type 1
                     TsaC"
                     /protein_id="HAY9040885.1"
                     /translation="MNNNLQGDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVM
                     RLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPAT
                     TPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVRAQFGA
                     AFPVVLGETGGRLNPSEIRDALTGELFRQG"
     gene            23214..24032
                     /gene="aroE"
                     /locus_tag="JN078_001640"
     CDS             23214..24032
                     /gene="aroE"
                     /locus_tag="JN078_001640"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709069.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HAY9040886.1"
                     /translation="METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFI
                     NTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLKRLEDGRLQGDNTD
                     GIGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAK
                     LFAHTGSIQALGMDELEGHEFDLIINATSSGISGDIPAIPSSLIHLGIYCYDMFYQKG
                     KTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEELSA"
     gene            24029..24286
                     /locus_tag="JN078_001641"
     CDS             24029..24286
                     /locus_tag="JN078_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1488 domain-containing protein"
                     /protein_id="HAY9040887.1"
                     /translation="MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRF
                     TGDTPEQWLASFRQHRWDLEEEAENLIQEQSEDDQGWVWLP"
     gene            complement(24262..24816)
                     /locus_tag="JN078_001642"
     CDS             complement(24262..24816)
                     /locus_tag="JN078_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HAY9040888.1"
                     /translation="MSDVLRPYRDLFPQIGQRVMIDDSSVVIGGVRLADDVGIWPLVV
                     IRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGN
                     RVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAG
                     LRYSANNYVKWKDEYLDQGNQTQP"
BASE COUNT         6458 a         5996 c         6568 g         6220 t
ORIGIN      
        1 aaggcagcgg gttttttaat gattcttttc ctctcatgag cagaccaata actacggctc
       61 cgcaagcgaa tgaggcagca aggaaaacca gtcgtggtaa gaaggcccat gaatgccagg
      121 cgccaagggc ggcgagaaac ttcacatcac catagcctaa tccttcttta tgtcgcagta
      181 tgcgataccc ccagtaaatg acagcgaatg tgccgtaacc aacaattgtc ccccataacg
      241 catcggctaa accatcagga tgacaaactt gatagaacaa aagacctgac cagagtaacg
      301 ggcacgtaaa tctgtcaggt aacaagccat gctttgcatc ccagaaaaaa agtagggctg
      361 ataaacaagc gtacaaaatc agaaagggaa gggtagtgtc cataaaacat cctctgtaat
      421 tggagtatca ccatcgaata actccggatg ctcagcaaca gagagagcgc tgatttgtta
      481 acctgattcc ggtgaaaaac gctatcttca caaccttaca aatttcgtgg aatgcagctc
      541 gcaatctgcg cgttgcgatt aatttctacc cgatgcttgc gtcaggctca gatttgcgta
      601 taatgcgcgg gcttgtcgta gttgacagca ggttcaatct gaacctcagt tagccgaatt
      661 tggctaccta acaatgctcc caatcgggga gctacgtaag aacggttaca ctctcccatc
      721 aatcgtaatg ggtctgagga gtaatcattt tcgtttataa aataattgga gctctggtct
      781 catgcagaac caaagaatcc gtatccgcct gaaagcgttt gatcatcgtc tgatcgatca
      841 agcaaccgcg gaaatcgtcg agactgccaa gcgcactggt gcgcaggtcc gtggtccgat
      901 cccgctgccg acacgcaaag agcgcttcac tgttctgatc tccccgcacg tcaacaaaga
      961 cgcgcgcgat cagtacgaaa tccgtactca cttgcgtctg gttgacatcg ttgagccaac
     1021 cgagaaaacc gttgatgctc tgatgcgtct ggatctggct gccggtgtag acgtgcagat
     1081 cagcctgggt taatcaggtc attgagcgat tgagaggttg aaacaatgat tggtttagtc
     1141 ggtaaaaaag tgggtatgac ccgtatcttc acagaagacg gcgtttctat cccagtaacc
     1201 gtaatcgaag ttgaagcaaa ccgcgttact caggttaaag acctggctaa cgatggctac
     1261 cgtgctattc aggtgaccac cggtgctaaa aaagctaacc gtgtgaccaa gcctgaagct
     1321 ggccacttcg ctaaagctgg cgtagaagct ggccgtggtc tgtgggaatt ccgcctggct
     1381 gaaggcgaag agttcactgt aggtcagagc attagcgttg aactgtttgc tgacgttaaa
     1441 aaagttgacg taactggcac ctctaaaggt aaaggtttcg caggtaccgt taagcgctgg
     1501 aacttccgta cccaggacgc tactcacggt aactccttgt ctcaccgcgt tccgggttct
     1561 atcggtcaga accagactcc gggcaaagtg ttcaaaggca agaaaatggc aggtcagatg
     1621 ggtaacgaac gtgtaaccgt tcagagcctt gacgtagtac gcgttgacgc tgagcgcaac
     1681 ctgctgctgg ttaaaggtgc tgtcccgggt gcaaccggta gcgacctgat cgttaaacca
     1741 gctgtgaagg cgtaaggaga tagcaatgga attagtattg aaagacgcgc agagcgcgct
     1801 gactgtttcc gaaactacct tcggtcgtga tttcaacgaa gcgctggttc accaggttgt
     1861 tgttgcttat gcagctggtg ctcgtcaggg tactcgtgct cagaagactc gtgctgaagt
     1921 aactggttcc ggtaaaaaac cgtggcgcca gaaaggcacc ggccgtgcgc gttctggttc
     1981 tatcaagagc ccgatctggc gttctggtgg cgtgaccttt gctgctcgtc cgcaggacca
     2041 cagtcaaaaa gttaacaaga agatgtaccg cggcgcgctg aaaagcatcc tgtccgaact
     2101 ggtacgtcag gatcgtctga tcgttgtcga gaagttctct gtagaagcgc cgaaaactaa
     2161 gctgctggca cagaaactga aagacatggc tctggaagat gtgctgatca tcaccggtga
     2221 gctggacgaa aacctgttcc tggctgcgcg caacctgcac aaggttgacg tacgcgatgc
     2281 aactggtatc gacccggtta gcctgatcgc cttcgacaaa gtcgtaatga ctgctgatgc
     2341 tgttaagcaa gttgaggaga tgctggcatg attcgtgaag aacgtctgct gaaggtgctg
     2401 cgtgcaccgc acgtttctga aaaagcgtct actgcgatgg aaaaatccaa caccatcgta
     2461 ctcaaagttg ctaaagacgc gaccaaagca gaaatcaaag ctgctgtgca gaaactgttt
     2521 gaagtcgaag tcgaagtcgt taacaccctg gtagttaaag ggaaagttaa acgtcacgga
     2581 cagcgtatcg gtcgtcgtag cgactggaaa aaagcttacg tcaccctgaa agaaggccag
     2641 aatctggact tcgttggcgg cgctgagtaa gtcggaggag taatacaatg gcagttgtta
     2701 aatgtaaacc gacatctccg ggtcgtcgcc acgtagttaa agtggttaac cctgagctgc
     2761 acaagggcaa accttttgct ccgttgctgg aaaaaaacag caaatccggt ggtcgtaaca
     2821 acaatggccg tatcaccact cgtcatatcg gtggtggcca caagcaggct taccgtattg
     2881 ttgacttcaa acgcaacaaa gacggtatcc cggcagttgt tgaacgtctt gagtacgatc
     2941 cgaaccgttc cgcgaacatc gcgctggttc tgtacaaaga cggtgaacgc cgttacatcc
     3001 tggcccctaa aggcctgaaa gctggcgacc agattcagtc tggcgttgat gctgcaatca
     3061 aaccaggtaa caccctgccg atgcgcaaca tcccggttgg ttctactgtt cataacgtag
     3121 aaatgaaacc aggtaaaggc ggtcagctgg cacgttccgc tggtacttac gttcagatcg
     3181 ttgctcgtga tggtgcttat gtcaccctgc gtctgcgttc tggtgaaatg cgtaaagtag
     3241 aagcagactg ccgtgcaact ctgggcgaag ttggcaatgc tgagcatatg ctgcgcgttc
     3301 tgggtaaagc aggtgctgca cgctggcgtg gtgttcgtcc gaccgttcgc ggtaccgcga
     3361 tgaacccggt agaccaccca catggtggtg gtgaaggtcg taactttggt aagcacccgg
     3421 taactccgtg gggcgttcag accaaaggta agaagacccg cagcaacaag cgtactgata
     3481 aattcatcgt acgtcgccgt agcaaataat tttagaggat aagccatgcc acgttctctc
     3541 aagaaaggtc cttttattga cctgcacttg ctgaagaagg tagagaaagc ggtggaaagc
     3601 ggagacaaga agcccctgcg cacttggtcc cgtcgttcaa cgatctttcc taacatgatc
     3661 ggtttgacca tcgctgtcca taatggtcgt cagcacgttc cggtatttgt aaccgacgaa
     3721 atggtcggtc acaaactggg tgaattcgca ccgactcgta cttatcgcgg ccacgctgct
     3781 gataaaaaag cgaagaagaa ataaggtagg aggaagagat ggaaactatc gctaaacatc
     3841 gccatgctcg ttcttctgct cagaaggttc gccttgttgc tgacctgatt cgcggtaaga
     3901 aagtgtcgca ggctctggat attttgacct acaccaacaa gaaagcggct gtactggtca
     3961 agaaagttct ggaatctgcc attgctaacg ctgaacacaa cgatggcgct gacattgacg
     4021 atctgaaagt tacgaaaatt ttcgtagacg aaggcccgag catgaagcgc attatgccgc
     4081 gtgcaaaagg tcgtgcagat cgcatcctga agcgcaccag ccacatcact gtggttgtgt
     4141 ccgatcgctg agactctgga gactagcaat gggtcagaaa gtacatccta atggtattcg
     4201 cctgggtatt gtaaaaccat ggaactctac ctggtttgcg aacaccaaag aattcgctga
     4261 caacctggac agcgatttta aagtacgtca gtacctgact aaggaactgg ctaaagcgtc
     4321 cgtatctcgt atcgttatcg agcgtccggc taagagcatc cgtgtaacca ttcacactgc
     4381 tcgcccgggt atcgttatcg gtaaaaaagg tgaagacgta gaaaaactgc gtaaggtcgt
     4441 agcggacatc gctggcgttc ctgcacagat caacatcgcc gaagttcgta agcctgaact
     4501 ggacgcaaaa ctggttgctg acagcatcac ttctcagctg gaacgtcgcg ttatgttccg
     4561 tcgtgctatg aagcgtgctg tacagaacgc aatgcgtctg ggcgctaaag gtattaaagt
     4621 tgaagttagc ggccgtctgg gcggcgcgga aatcgcacgt accgaatggt accgcgaagg
     4681 tcgcgtaccg ctgcacactc tgcgtgctga catcgactac aacacctctg aagcgcacac
     4741 cacttacggt gtaatcggcg ttaaagtgtg gatcttcaaa ggcgagatcc tgggtggtat
     4801 ggctgctgtt gaacaaccgg aaaaaccggc tgctcagcct aaaaagcagc agcgtaaagg
     4861 ccgtaaataa ggagcgtcgc tgatgttaca accaaagcgt acaaaattcc gtaaaatgca
     4921 caaaggccgt aaccgcggtc tggcgcaggg tacggatgtt agcttcggca gcttcggtct
     4981 gaaagctgtt ggccgtggtc gtctgactgc ccgtcagatc gaagcagcac gtcgtgctat
     5041 gacccgtgca gttaagcgtc aaggtaagat ctggatccgt gtgttcccgg acaaaccgat
     5101 cactgaaaag ccgctggcag tgcgtatggg taaaggtaaa ggtaacgtgg agtattgggt
     5161 tgccttgatt cagccgggta aagtcctgta tgaaatggac ggtgttccgg aagagctggc
     5221 ccgtgaagca ttcaagctgg cagcagcgaa actgccgatt aaaaccacct ttgtaactaa
     5281 gacggtgatg taatgaaagc aaaagagctg cgtgagaaga gcgttgaaga gctgaacacc
     5341 gagctgctga acctgctgcg tgagcagttc aacctgcgta tgcaggctgc aagtggccag
     5401 ctgcaacagt ctcacctgtt gaagcaagtg cgtcgcgatg tcgcacgcgt taagacttta
     5461 ctgaacgaga aggctggtgc gtaatgaccg ataaaatccg tactctgcaa ggtcgcgttg
     5521 ttagcgacaa aatggagaaa tccattgttg ttgctatcga acgttttgtg aaacacccga
     5581 tctacggtaa attcatcaag cgtacgacca aactgcacgt acatgacgag aacaacgaat
     5641 gcggtatcgg tgacgtggtt gaaatccgcg aatgccgtcc gctgtccaag actaaatcct
     5701 ggacgctggt tcgcgttgta gagaaagcgg ttctgtaata cagtacactc tctcgatacg
     5761 aataaacggc tcagaaatga gccgtttatt ttttctaccc atatccttga agcggtgtta
     5821 taatgccgcg ccctcgatat ggggattttt aacgacctga ttttcgggtc tcagtagtag
     5881 ttgacattag cggagcacta aaatgatcca agaacagact atgctgaacg tcgccgacaa
     5941 ctccggtgca cgtcgcgtaa tgtgtatcaa ggttctgggt ggctcgcacc gtcgctacgc
     6001 aggcgtaggc gacatcatca agatcaccat caaagaagca attccgcgtg gtaaggtcaa
     6061 aaaaggtgat gtgctgaagg cggtagtggt gcgcaccaag aagggtgttc gtcgcccgga
     6121 cggttctgtc attcgcttcg atggtaatgc ttgtgttctt ctgaacaaca acagcgagca
     6181 gcctatcggt acgcgtattt ttgggccggt aactcgtgag cttcgtagtg agaagttcat
     6241 gaaaattatc tctctggcac cagaagtact ctaaggagcg aatcatggca gcgaaaatcc
     6301 gtcgtgatga cgaagttatc gtgttaaccg gtaaagataa aggtaaacgc ggtaaagtta
     6361 agaatgtcct gtcttccggc aaggtcattg ttgaaggtat caacctggtt aagaaacatc
     6421 agaagccggt tccggccctg aaccaaccgg gtggcatcgt tgaaaaagaa gccgctattc
     6481 aggtttccaa cgtagcaatc ttcaatgcgg caaccggcaa ggctgaccgt gtaggcttta
     6541 gattcgaaga cggcaaaaaa gtccgtttct tcaagtctaa cagcgaaact atcaagtaat
     6601 ttggagtagt acgatggcga aactgcatga ttactacaaa gacgaagtag ttaaaaaact
     6661 catgactgag tttaactaca attctgtcat gcaagtccct cgggtcgaga agatcaccct
     6721 gaacatgggt gttggtgaag cgatcgctga caaaaaactg ctggataacg cagcagcaga
     6781 cctggcagca atctccggtc aaaaaccgct gatcaccaaa gcacgcaaat ctgttgcagg
     6841 cttcaaaatc cgtcagggct atccgatcgg ctgtaaagta actctgcgtg gcgaacgcat
     6901 gtgggagttc tttgagcgcc tgatcactat tgctgtacct cgtatccgtg acttccgtgg
     6961 cctgtccgct aagtctttcg acggtcgtgg taactacagc atgggtgtcc gtgagcagat
     7021 catcttccca gaaatcgact acgataaagt cgaccgcgtt cgtggtttgg atattaccat
     7081 taccactact gcgaaatctg acgaagaagg ccgcgctctg ctggctgcct ttgacttccc
     7141 gttccgcaag taaggtaggg ttactaaatg gctaagcaat caatgaaagc acgcgaagta
     7201 aaacgcgtag ctttagctga taaatacttc gcgaaacgcg ctgaactgaa agcgatcatc
     7261 tctgatgtga acgcttccga cgaagatcgt tggaacgctg ttctcaagct gcagactctg
     7321 ccgcgtgatt ccagcccgtc tcgtcagcgt aaccgctgcc gtcaaacagg tcgtccgcat
     7381 ggtttcctgc ggaagttcgg gttgagccgt attaaggtcc gtgaagccgc tatgcgcggt
     7441 gaaatcccgg gtctgaaaaa ggctagctgg taattgtcac caattgaatc acgggagtaa
     7501 agacagatga gcatgcaaga tccgatcgcg gatatgctga cccgtatccg taacggtcag
     7561 gccgcgaaca aagctgcggt caccatgcct tcctccaagc tgaaagtggc aatcgccaac
     7621 gtgctgaagg aagaaggttt tattgaagat tttaaagttg aaggcgacac caagcctgaa
     7681 ctggaactta ctctgaagta tttccagggc aaagctgttg tagaaagcat tcagcgtgtc
     7741 agccgcccag gtctgcgcat ctataaacgt aaagatgagc tgccgaaagt tatggcgggt
     7801 ctgggtatcg cagttgtttc tacctctaaa ggtgttatga ctgatcgtgc agcgcgccag
     7861 gctggtcttg gtggcgaaat tatctgctac gtagcctaat cggaggaaaa aatgtctcgt
     7921 gttgctaaag caccggtcgt tgttcctgcc ggcgttgacg taaaaatcaa cggtcaggtt
     7981 attacgatca aaggtaaaaa cggcgagctg actcgtactc tcaacgatgc tgttgaagtt
     8041 aaacatgcag ataataccct gaccttcggt ccgcgtgatg gttacgcaga cggttgggca
     8101 caggctggta ccgcgcgtgc cctgctgaac tcaatggtta tcggtgttac cgaaggcttc
     8161 actaagaagc tgcagctggt tggtgtaggt taccgtgcag cggttaaagg taatgtgatt
     8221 aacctgtctc tgggtttctc tcatcctgtt gaccatcagc tgcctgcggg tatcactgct
     8281 gaatgtccga ctcagactga aatcgtgctg aaaggcgctg ataagcaggt gatcggccag
     8341 gttgcagcgg atctgcgcgc ctaccgtcgt cctgagcctt ataaaggcaa gggtgttcgt
     8401 tacgccgacg aagtcgtgcg tatcaaagag gctaagaaga agtaaggtaa cactatggat
     8461 aagaaatctg ctcgtatccg tcgtgcgacc cgcgcacgcc gcaagctcca ggagctgggc
     8521 gcaactcgcc tggtggtaca tcgtaccccg cgtcacattt acgcacaggt aattgcaccg
     8581 aacggttctg aagttctggt agctgcttct actgtagaaa aagctatcgc tgaacaactg
     8641 aagtacaccg gtaacaaaga cgcggctgca gctgtgggta aagctgtcgc tgaacgcgct
     8701 ctggaaaaag gcatcaaaga tgtatccttt gaccgttccg ggttccaata tcatggtcgt
     8761 gtccaggcac tggcagatgc tgcccgtgaa gctggccttc agttctaagg tagaggtgta
     8821 agatggctca catcgaaaaa caagctggcg aactgcagga aaagctgatc gcggtaaacc
     8881 gcgtatctaa aaccgttaaa ggtggtcgta ttttctcctt cacagctctg actgtagttg
     8941 gcgatggtaa cggtcgcgtt ggttttggtt acggtaaagc gcgtgaagtt ccagcagcga
     9001 tccagaaagc gatggaaaaa gcccgtcgca atatgattaa cgtcgcgctg aataacggca
     9061 ctctgcaaca ccctgttaaa ggtgttcaca cgggttctcg cgtattcatg cagccggctt
     9121 ccgaaggtac cggtatcatc gccggtggtg caatgcgcgc cgttctggaa gtcgctgggg
     9181 ttcataacgt tctggctaaa gcatatggtt ccaccaaccc gatcaacgtg gttcgtgcaa
     9241 ctattgatgg cctggaaaat atgaattctc cagaaatggt cgctgccaag cgtggtaaat
     9301 ccgttgaaga aattctgggg aaataaacca tggcaaagac tattaaaatt actcaaaccc
     9361 gcagtgcaat cggtcgtctg ccgaaacaca aggcaacgct gcttggcctg ggtctgcgtc
     9421 gtattggtca caccgtagag cgcgaggata ctcctgctat tcgcggtatg atcaacgcgg
     9481 tttccttcat ggttaaagtt gaggagtaag agatgcgttt aaatactctg tctccggccg
     9541 aaggctccaa aaaggcgggt aaacgcttgg gtcgtggtat cggttctggc ctcggtaaaa
     9601 ccggtggtcg tggtcacaaa ggtcagaagt ctcgttctgg cggtggcgta cgtcgcggtt
     9661 tcgagggtgg tcagatgcct ctgtaccgtc gtctgccgaa attcggcttc acttctcgta
     9721 aagcagcgat tacagccgaa gttcgtctgt ctgacctggc taaagtagaa ggcggtgttg
     9781 tagacctgaa cacgctgaaa gcggctaaca ttatcggtat ccagatcgag ttcgcgaaag
     9841 tgatcctggc tggcgaagta acgactccgg taactgttcg tggcctgcgt gttactaaag
     9901 gcgctcgtgc tgctatcgaa gctgctggcg gtaaaatcga ggaataagta gcagatggct
     9961 aaacaaccgg gattagattt tcaaagtgcc aaaggtggct taggcgagct gaaacgcaga
    10021 ctgctgtttg ttatcggtgc gctgattgtg ttccgtattg gctcttttat tccgatccct
    10081 ggtattgatg ccgctgtact tgccaaactg cttgagcaac agcgaggcac catcattgag
    10141 atgtttaaca tgttctctgg tggtgctctc agccgtgctt ctatctttgc tctggggatc
    10201 atgccgtata tttcggcgtc gatcattatc cagctgctga cggtggttca cccaacgttg
    10261 gcggaaatta agaaagaagg ggagtctggt cgtcgtaaga tcagccagta cacccgctac
    10321 ggtactctgg tgctggcaat attccagtcg atcggtattg ctaccggtct gccgaatatg
    10381 cctggtatgc aaggcctggt gattaacccg ggctttgcat tctacttcac cgctgttgta
    10441 agtctggtca caggaacgat gttcctgatg tggttgggcg aacagatcac tgaacgaggt
    10501 atcggcaacg gtatttcaat cattatcttc gccggtattg tcgcgggact cccgccagcc
    10561 attgcccata ctatcgagca agcgcgtcaa ggcgacctgc acttcctcgt gttgctgttg
    10621 gttgcagtat tagtatttgc agtgacgttc tttgttgtat ttgttgagcg tggtcaacgc
    10681 cgcattgtgg taaactacgc gaaacgtcag caaggtcgtc gtgtctatgc tgcacagagc
    10741 acacatttac cgctgaaagt gaatatggcg ggggtaatcc cggcaatctt cgcttccagt
    10801 attattctgt tcccggcgac catcgcgtca tggttcgggg gcggtactgg ttggaactgg
    10861 ctgacaacaa tttcgctgta tttgcagcct gggcaaccgc tttatgtgtt actctatgcg
    10921 tctgcaatca tcttcttctg tttcttctac acggcgttgg ttttcaaccc gcgtgaaaca
    10981 gcagataacc tgaagaagtc cggtgcattt gtaccaggaa ttcgtccggg agagcaaacg
    11041 gcgaagtata tcgataaagt aatgacccgc ctgaccctgg ttggtgcgct gtatattacc
    11101 tttatctgcc tgatcccgga gttcatgcgt gatgcaatga aagtaccgtt ctacttcggt
    11161 gggacctcac tgcttatcgt tgttgtcgtg attatggact ttatggctca agtgcaaact
    11221 ctgatgatgt ccagtcagta tgagtctgca ttgaagaagg cgaacctgaa aggctacggc
    11281 cgataattgg tcgcccgaga agttacggag agtaaaaatg aaagttcgtg cttccgtcaa
    11341 gaaattatgc cgtaactgca aaatcgttaa gcgtgatggt gtcatccgtg tgatttgcag
    11401 tgccgagccg aagcataaac agcgccaagg ctgatttttt cgcatatttt tcttgcaaag
    11461 ttgggttgag ctggctagat tagccagcca atcttttgta tgtctgtgcg tttccatttg
    11521 agtatcctga aaacgggctt ttcagcatgg aacgtacata ttaaatagta ggagtgcata
    11581 gtggcccgta tagcaggcat taacattcct gatcataagc atgccgtaat cgcattaact
    11641 tcgatttatg gcgtcggcaa gacccgttct aaagccatcc tggctgcagc gggtatcgct
    11701 gaagatgtta agatcagtga gctgtctgaa ggacaaatcg atacgctgcg tgacgaagtt
    11761 gccaaatttg tcgttgaagg tgatctgcgc cgtgaaatca gcatgagcat caagcgcctg
    11821 atggatcttg gttgctatcg cggcttgcgt catcgtcgtg gtctcccggt tcgcggtcag
    11881 cgtaccaaga ccaacgcacg tacccgtaag ggtccgcgca aaccgatcaa gaaataatcg
    11941 gggtgattga ataatggcaa aggcaccaat tcgtgcacgt aaacgtgtaa gaaaacaagt
    12001 ctctgacggc gtggctcata tccatgcttc tttcaacaac accatcgtga ctatcactga
    12061 tcgtcagggt aacgcgttgg gttgggcaac agccggtggt tccggtttcc gtggttctcg
    12121 caaatccact ccgtttgcag ctcaggttgc agcagagcgt tgcgctgacg ccgtgaaaga
    12181 atacggcatc aagaatctgg aagttatggt taaaggtccg ggtccaggcc gcgaatctac
    12241 tattcgtgct ctgaacgccg caggtttccg catcactaac attactgatg tgactccgat
    12301 ccctcataac ggttgtcgtc cgccgaaaaa acgtcgcgta taacgcctcg ttttccaggt
    12361 ttgttggaga aagaaaatgg caagatattt gggtcctaag ctcaagctga gccgtcgtga
    12421 gggcaccgac ttattcctta agtctggcgt tcgcgcgatc gataccaagt gtaaaattga
    12481 acaagctcct ggccagcacg gtgcgcgtaa accgcgtctg tctgactatg gtgtgcagtt
    12541 gcgtgaaaag caaaaagttc gccgtatcta tggtgtgctg gagcgtcagt tccgtaacta
    12601 ctacaaagaa gcagcacgtc tgaaaggcaa caccggtgaa aacctgttgg ctctgctgga
    12661 aggtcgtctg gacaacgttg tataccgtat gggcttcggt gccactcgtg cagaagcacg
    12721 tcagctggtt agccataaag caattatggt aaacggtcgt gttgttaaca tcgcttctta
    12781 tcaggttagt ccgaatgacg ttgtaagcat tcgtgagaaa gcgaagaagc agtctcgcgt
    12841 gaaagccgct ctggagctgg ctgagcagcg tgaaaagcca acttggctgg aagttgatgc
    12901 tggcaagatg gaaggtacgt ttaagcgtaa gccggagcgt tctgatctgt ctgcggacat
    12961 taacgaacac ctgatcgtcg agctttactc caagtaaagc ttagtaccaa agagaggaca
    13021 caatgcaggg ttctgtgaca gagtttctaa aaccgcgcct ggttgatatc gagcaagtga
    13081 gttcgacgca cgccaaggtg acccttgagc ctttagagcg tggctttggc catactctgg
    13141 gtaacgcact gcgccgtatt ctgctctcat cgatgccggg ttgcgcggtg accgaggttg
    13201 agattgatgg tgtactacat gagtacagca ccaaagaagg cgttcaggaa gatatcctgg
    13261 aaatcctgct caacctgaaa gggctggcgg tgagagttca gggcaaagat gaagttattc
    13321 ttaccttgaa taaatctggc attggccctg tgactgcagc cgatatcacc cacgacggtg
    13381 atgtcgaaat cgtcaagccg cagcacgtga tctgccacct gaccgatgag aacgcgtcta
    13441 ttagcatgcg tatcaaagtt cagcgcggtc gtggttatgt gccggcttct acccgaattc
    13501 attcggaaga agatgagcgc ccaatcggcc gtctgctggt cgacgcatgc tacagccctg
    13561 tggagcgtat tgcctacaat gttgaagcag cgcgtgtaga acagcgtacc gacctggaca
    13621 agctggtcat cgaaatggaa accaacggca caatcgatcc tgaagaggcg attcgtcgtg
    13681 cggcaaccat tctggctgaa caactggaag ctttcgttga cttacgtgat gtacgtcagc
    13741 ctgaagtgaa agaagagaaa ccagagttcg atccgatcct gctgcgccct gttgacgatc
    13801 tggaattgac tgtccgctct gctaactgcc ttaaagcaga agctatccac tatatcggtg
    13861 atctggtaca acgtaccgag gttgagctcc ttaaaacgcc taaccttggt aaaaaatctc
    13921 ttactgagat taaagacgtg ctggcttccc gtggactgtc tctgggcatg cgcctggaaa
    13981 actggccacc ggcaagcatc gctgacgagt aaccggatca caggttaagg ttttactgag
    14041 aaggataagg tcatgcgcca tcgtaagagt ggtcgtcaac tgaaccgcaa cagcagccat
    14101 cgccaggcta tgttccgcaa tatggcaggt tcactggttc gtcatgaaat catcaagacg
    14161 actctgccta aagcgaaaga gctgcgccgc gtagttgagc cgctgattac tcttgccaag
    14221 actgatagcg ttgctaatcg tcgtctggca ttcgcccgta ctcgtgataa cgagatcgtg
    14281 gcaaaactgt ttaacgaact gggcccgcgt ttcgcgagcc gtgccggtgg ttacactcgt
    14341 attctgaagt gtggcttccg tgcaggcgac aacgcgccga tggcttacat cgagctggtt
    14401 gatcgttcag agaaagcaga agctgctgca gagtaatctg aagcaacgta aaaaaacccg
    14461 ccccggcggg tttttttata cccgtagcat ccccacttat ctacaatagc tgtactcttt
    14521 ttgttcatcc cctggagtat ttatgtggtt acttgaccag tgggcagagc gtcatatagc
    14581 agaagcgcaa gcgaaaggtg agtttgataa tctggcaggt agcggcgaac cattgatact
    14641 ggatgatgat tctcatgtgc caccggaatt acgtgcgggg tatcgcttgc tgaagaatgc
    14701 tggttgctta ccgccagaac ttgagcagcg gagggaagca attcagcttc tggatatcct
    14761 gagaggtatc cgtcacgatg atccgcaata tcaagaggtt agccgtcgat tgtcattact
    14821 ggaattgaag ctgcgacaag ctggatttag taccgatttt ttacgcggcg attatgctga
    14881 caagttgttg gacaaaatca acgataacta gtggagtatg tatgtatcgc attggtgagc
    14941 tggcaaaaat ggcggaagta acacctgaca cgattcgtta ttacgaaaaa cagcagatga
    15001 tggagcatga agtgcgtact gaaggcgggt ttcgcctgta taccgaaagc gatctccagc
    15061 gattgaaatt tatccgccat gccagacaac taggtttcag tctggagtcg atccgcgagt
    15121 tgctgtcgat ccgcatcgat cctgaacacc atacctgtca ggagtcaaaa ggcattgtgc
    15181 aggaaagatt gcaggaagtc gaagcacgga tagccgagtt gcagagtatg cagcgttcct
    15241 tgcaacgcct taacgatgcc tgttgtggga ccgcccatag cagtgtttat tgttcgattc
    15301 ttgaagctct tgaacaaggg gcgagtggcg ttaagagtgg ctgttgattt tttgcactgg
    15361 caggattaca ctcgcgccgt aaaataacca attggagttt ttatgagccg atatcagcat
    15421 actaaagggc agataaggga taatgcgata gaagcattac tacatgatcc cttattccga
    15481 cagcgcgtag agaaaaataa gaaggggaaa ggcagttaca tgcgaaaagg aaaacatggc
    15541 aatcggggga actgggaggc cagtggcaag aaagtaaatc acttttttac cactggtctt
    15601 ctgctttcag gcgcttgtta agagcggtta ttctgctctt tcagcaaatc acgaatttct
    15661 gccagtaata cttcttcttt agttggtgca ggtgcggcag ctggttcttc ttttttccga
    15721 ttcagtttgt tgattagctt aatcgccata aagatggcaa aggccacaat cagaaaatca
    15781 aagacgtttt gaatgaagac accgtaatgc atcacaacag cagggatatc cccctgcgca
    15841 tcgcgtagcg tgacagcaaa ctgtttaaag tcgatcccgc caattaataa gcccagaggt
    15901 ggcatgatga tatcggcaac cagtgaagat acaatcttcc cgaatgccgc accgataatg
    15961 acacccaccg ccaaatccac cacgttcccg cgcatcgcaa attcgcgaaa ttctttaata
    16021 atgctcatgt tattctccct atgaagccga caaccataag tctaacaaat gttaagccat
    16081 tttcctgcca ggaatgaatt taattaatcc ttgataatca aagggaaata ataaggcgtc
    16141 attagacgcc ttattaatta caagaagaaa gggcttggct ggaagagtct ttcgacgtcg
    16201 gtaataaact ttttatctgt gaggaacata attacgtgat cgccttgctc aatgcgcaga
    16261 ttgtcattgg caatcatcac gtcgtttcca cgtaccaccg ctccaataat cgttcctggc
    16321 ggtagcttga tttcgtcaat gactctgccg acaacgcgtg aggtgctttc atcaccgtga
    16381 gcaacggctt caatagcttc tgctacgccg cggcgcaatg aggaaacacc aacaatatct
    16441 gcttttcgca catggctaag caacgcagaa atagttgctt gttgtggtga aattgcaata
    16501 tcgatcacgc tcccctgaac cagatccaca taagcgcgac gctggatcaa taccatcacc
    16561 tttttcgcac ccatacgttt ggcaagcatg gcggacatga tattggcctc gtcatcgttg
    16621 gtgacggcaa taaacagatc aacttgatcg atatgttctt cggccagcag ttcttgatcc
    16681 gacgcatcac caaaaaagac gatcgtattc tgcaactttt ccgccagttc ggcagcgcgc
    16741 tgctgattac gttcgatgag tttaacgctg taatcttttt ccagacgacg cgccagccct
    16801 gcaccgatat taccgccacc aaccagcatg atccgcttat acggtttttc cagtcgctgt
    16861 aattcactca tcaccgcgcg gatatgctgt gaagcggcaa taaagaacac ttcatcacca
    16921 gcttcaacaa tggtcgaacc ttgtggacga atggggcgat cgtggcggaa aattgctgcc
    16981 acacgagtat cgatatgtgg catatgttcg cgcatggtcg aaagtgcatt accaatcagc
    17041 gggccgccat aataggcttt aactacagcg aggctgactt taccctcagc gaagttcacc
    17101 acctgcaatg cgcctggata ctcaatcagt cggtaaatat tatcgataac caactgctct
    17161 ggtgcgatca gatgatcaat cggtacagca tctgaatgaa atagcttatc ggcatcgcgt
    17221 acgtagtctg gtgagcggat gcgagcgatg cgattagggg tgttgaaaag tgagtaggct
    17281 acctggcagg caaccatatt ggtttcatct gaactggtta cagcaaccag catatcggcg
    17341 tcgtcggcac ctgcctcccg caatacgcgt ggatgagagc catgcccctg cacgactcgc
    17401 aggtcaaatt tatcctgcaa ggtccgcaga cgctcaccgt tggtatcgac aacagtaata
    17461 tcgttgttct cgccaaccag gttttccgcc agtgtgccgc caacctggcc ggcacccaga
    17521 atgataattt tcatcagtct cgacccgtta tctcatcact ttttgattag cttagcgtaa
    17581 aagaagccgt cgccctcttc ggcaccaggc agattttgtt tacccggttg ctctggtgtt
    17641 cctgtttcgc aaagttcggc atcagcggta cgttgcaaaa aagctttaat ctgcaggcta
    17701 ttctcttccg gtaacaccga acaggtggca tagaccaggg ttccaccgga ttttaaatgc
    17761 ggccaaatgg cgtcgagaat ttcagactgc aattgcgcga gttccgggat atcgcgatcg
    17821 cgacgtaacc atttaatatc cggatggcga cgaatcaccc ccgttgctga acaaggcgca
    17881 tctaataaaa tgcgatcaaa ctgttgctcg ccacaccatt gggaagggta acggccatca
    17941 ccttgtttca cggttgcctt cataccaagg cgttttaaat tgtcgtaaac gcgagagagg
    18001 cgctgttcgt caatatcaac cgcaacaacc tgcgcttctg gtgccacctc aaggatatgc
    18061 gttgttttac cgccgggggc ggcacaaaga tccagaatgt gttcaccgtt ttgtggcgca
    18121 agccaggtca tgcaaccttg tgctgatgca tcctgaacgg taacccatcc gtcttcaaaa
    18181 ccaggtagcg catgaacagg tgcaggtgtt tccagacgta cagcatcagg gtaatccgca
    18241 tgcgggaaac ctttcattcc tgcttcatcc agcaatgcaa gccagctgtc gcgggaatga
    18301 tgcgtacgat taacgcgcag ccacattggc ggacgctggt tattggcttc gacgatggat
    18361 tgccactgct ctggatacgc tttttgcaga cgcttcagca accaggaagg atgcagataa
    18421 cgtgcatcac tggcattaaa cttggctaat aactcttctt gctgacgctg gaactggcgt
    18481 aatacaccgt taatcaaccc tttaagttgc ggacgcttaa ttgcgatagc gccttcaacc
    18541 gtttcagcca gcgcagcatg aggtggaatg cgggtataaa gcagttgata caaaccaacc
    18601 ataatcaggt aatgcacagt gcgctgtttg ccggtcatcg gacgggccat taacttatta
    18661 atcagccagt ctaactgcga aagcgtacgc agtacgccaa agcacaactc ttgaagaagt
    18721 gctttgtctt tatcagaaac tttttgctgg agcggtggca gaatgttgct taatgattgc
    18781 ccttgctcga cgacttgttc aacggcctgg gccgccatgc tacgtaaatt acgttgtttt
    18841 ttcataagta taaaaatgcc cggtaagacc gggcttagaa gagtggacta tcaggccaga
    18901 cggttgcccg gaacaaacca ttcccgacga gaattcagga ggtcttgcgc gctcatcgct
    18961 ttcttacccg caggttgtaa cgagagcaga ttcaggattc catcaccagt tgcaacctga
    19021 atgccttgtt tgttggcttc aaggatcgtt cctggtgcag cgttggttgc cgtatcaatg
    19081 accgacgctt tccagacttt aaccggctgt ctttcaattt ccagccagct cattggccat
    19141 ggattgaaag cgcgaatgta gcgttcaagc tgtgctgccg aaagtgacca gtcaatacgc
    19201 gcttcttctt tactcaactt ttcggcgtaa gtgacaagag tttcgtcctg aacttctggt
    19261 ttcgccgtgc cgtctgccag ttgtttcaac gtggtgataa gcccttgtgg gccaagctct
    19321 gccagcttgt cgtacagcgt accactggta tcttctgcag taatcgggca ggagagctta
    19381 tagagcatgt caccggtgtc taaaccgaca tccatttgca taatggtcac accagtttct
    19441 gcatcacccg cccatagtga gcgttggatt ggtgcagcac cgcgccagcg tggcagcagt
    19501 gaaccatgaa cgttgataca gccaagacgc ggcatctcca gcactgcttt aggcagaatt
    19561 aagccatagg cgacgacgac cataacatca gcctgcagat cggcgaccag ttgctggttt
    19621 tcttgtggac gcagggaaac aggttgaaaa acgggcagac ctttttcctc agccagaact
    19681 ttaaccgggc tgggcatcag ttttttaccg cgtcctgccg gtcggtctgg ctgggtgaac
    19741 acgccaacga cgttatgacc agaagacaac agcgcgtcga gatgacgcgc tgcaaagtca
    19801 ggtgtacccg caaaaataat acgtagtgat tctgacacgt tagttcttat ccttaagccc
    19861 gggctttcag acgatccagt ttttcaactt tctgacgaat acgttgttgt ttcaacggtg
    19921 acagataatc cataaacagt ttgccgacca ggtgatccat ctcatgctga atacagatgg
    19981 ctaacagacc gtctgcttcc aattcaaatg gtttaccgtc gcggtccagg gcgcgaattt
    20041 taactttctc tgcgcgtggc actaaagcac gttgttcagg gatcgacagg caaccttctt
    20101 caatgcctgt ttcgccgctt ttttctaaaa gctccggatt gattaacacc agccgttcgt
    20161 cacggttttc cgaaacatca ataacaatga tacgttgatg gatatcaacc tgggttgccg
    20221 ccaggccaat accttcttct gcgtacatcg tctcgaacat atcatcgacg atacgctgaa
    20281 tttctgcatt cacttcttct accggtttag caactttgcg aagccgctcg tccggaatat
    20341 gtaacacttg caaaactgac ataaatctcc agagatgtgt tcaggagtta gaaagattat
    20401 ttcttctatt ctagacaaat ccccctctga ttgacagcat cactgaccaa tcgcaaagat
    20461 tgctaaggct gcttatggca gggagataag gatggtcgat acagatattt ggctgcgttt
    20521 aatgagcatc agcagcttgt acggcgatga tatggtccgt atagctcact ggctggcaaa
    20581 acagtcgcat attgatgcgg ttgtattgca gcaaacaggg cttacattgc ggcaggcaca
    20641 acgctttctt tcatttccgc gaaagagtat cgaaagctca ctttgttggt tggagcaacc
    20701 caaccatcat ttaatccctg cggacagcga attttatcct cctcaacttc tggcgacgac
    20761 agattacccc ggcgcactgt ttgttgaagg agaactgtac gcgctgcatt catttcagct
    20821 tgccgtagtg gggagtcggg cgcattcatg gtatggcgag cgatggggac gattattttg
    20881 cgaaactctg gccacgcgtg gagtgacaat tacgagtgga ctggcgcgtg gaatcgatgg
    20941 tgtggcgcat aaagcggcct tacaggtaaa tggcgtcagc attgctgtat tggggaacgg
    21001 acttaatacc attcatccgc gccgccatgc ccgactggct accagtttgc ttgaacatgg
    21061 tggggcactt gtctcggaat ttcccctcga tgtttcaccc cttgcttaca atttcccacg
    21121 aagaaatcgc attatcagtg gtctaagtaa aggtgtactg gtggtggaag cggctttgcg
    21181 cagtggttcg ttggtgacag cacgttgtgc gcttgagcag gggcgtgaag tttttgcctt
    21241 gccaggacca atagggaatc cgggaagcga agggcctcac tggttaataa aacaaggtgc
    21301 gattcttgtg acggaaccgg aagaaattct ggaaaacttg caatttggat tgcactggtt
    21361 gccagacgcc cctgaaaatt cattttattc accagatcag caagacgtgg cattgccatt
    21421 tcctgagctc ctggctaacg taggagatga ggtaacacct gttgacgtcg tcgctgaacg
    21481 tgccggccaa cctgtgccag aggtagttac tcaactactc gaactggagt tagcaggatg
    21541 gatcgcagct gtacccggcg gctatgtccg attgaggagg gcatgccatg ttcgacgtac
    21601 taatgtattt gtttgaaacc tatattcaca cagaagctga gttgcgtgtg gatcaagaca
    21661 aacttgaaca ggatcttacc gacgcaggat ttgatcgaga agatatctac aatgccctgc
    21721 tttggctgga aaagcttgcg gattatcagg aaggactgac agaaccgatg caactggcct
    21781 ctgatccact ctccatgcgt atttataccc ctgaggagtg tgaaagactg gatgccagct
    21841 gtcgtggttt tctgcttttc cttgagcaaa ttcaggtgct taaccttgaa atccgtgaaa
    21901 tggtgataga gcgagtgctc gcgctggata ccgcagagtt cgacctggaa gacctgaaat
    21961 gggtaatcct gatggtgttg ttcaatattc cgggctgcga aaatgcgtac cagcaaatgg
    22021 aagaattact ctttgaagtg aatgaaggta tgctgcatta atcatttctt taattcagca
    22081 taagttgtta tggcgaaatc agcactgttc acggtgcgta ataatgagtc ctgcccaaag
    22141 tgcggggctg aactggttat tcgatccggg aaacacggtc cgtttcttgg atgctcacag
    22201 tatccggcgt gtgactacgt ccgtcctctg aaatcttcag cggatggaca tattgtcaaa
    22261 gttctggagg ggcaggtttg ccctgcatgt ggcgcaaatc tggtattacg ccagggacgc
    22321 tttggtatgt ttattggttg cagtaactac cctgaatgcg aacataccga acttatcgat
    22381 aaaccggacg aaacagcaat tacatgcccc caatgtcgga cgggccatct ggtccagcgc
    22441 cgctcccgtt atggcaaaac atttcactcc tgtgatcgct acccggagtg tcaatttgcc
    22501 attaacttca aacccatagc tggagaatgc cctgagtgtc attatccact actcatcgaa
    22561 aagaaaaccg cgcagggtgt aaaacacttt tgtgccagta aacaatgtgg aaagccggtt
    22621 tcggcggaat aataacgtga ataataacct gcaaggagac gctatcgcag ctgcgataga
    22681 tgtcctcaat gaagaacgtg tcatcgccta tccaacggaa gccgttttcg gtgttgggtg
    22741 cgatcctgat agcgaaacag cagtgatgag actgttggag ttaaaacagc gtccggttga
    22801 taaggggctg attttaatcg cggcaaatta cgagcagctt aaaccctata ttgatgacac
    22861 catgctgact gatgcgcagc gtgaaaccat tttttcccgc tggccaggtc ctgtcacctt
    22921 tgtctttccc gcgcctgcga caacaccgcg ctggttgacg ggccgctttg attcgcttgc
    22981 tgtacgagtc accgaccatc cgttggtggt tgctttgtgc caggcttatg gtaaaccgct
    23041 ggtttctacc agtgccaact tgagtggatt gccaccttgt cgaacagtag acgaagttcg
    23101 cgcacaattt ggcgcggcgt tcccggttgt gcttggtgaa acgggggggc gtttaaatcc
    23161 ttcagaaatc cgcgatgccc tgacgggtga actgtttcga caggggtaac ataatggaaa
    23221 cctatgctgt ttttggtaat ccgatagccc acagcaaatc gccattcatt catcagcaat
    23281 ttgctcagca actgaatatt gaacatccct atgggcgcgt gttggcaccc atcaatgatt
    23341 tcatcaacac actgaacgct ttctttagtg ctggtggtaa aggtgcgaat gtgacggtac
    23401 cttttaaaga agaggctttt gccagagcgg atgagcttac tgaacgggca gcgttggctg
    23461 gtgctgttaa taccctcaag cggttagaag atggacgctt gcagggtgac aataccgatg
    23521 gtataggttt gttaagcgat ctggaacgtc tgtcttttat ccgtccgggt ttacgtattc
    23581 tgcttatcgg cgctggtgga gcatctcgcg gcgtactact accactcctt tccctggact
    23641 gtgcggtgac aatcactaat cggacggtat cccgtgcgga agagttggct aaattgtttg
    23701 cgcacactgg cagtattcag gcgttgggta tggacgaact ggaaggtcat gagtttgatc
    23761 tcattattaa tgcaacatcc agtggcatca gtggtgatat tccggcgatc ccgtcatcgc
    23821 tcattcatct aggcatttat tgctatgaca tgttctatca gaaaggaaaa actccttttc
    23881 tggcatggtg tgagcagcga ggctcaaagc gtaatgctga tggtttagga atgctggtgg
    23941 cacaggcggc tcatgccttt cttctctggc acggtgttct gcctgacgta gaaccagtta
    24001 taaagcaatt gcaggaggaa ttgtccgcgt gaatcaggcc atccagtttc cggacaggga
    24061 agagtgggac gagaataaaa aatgtgtatg ttttcccgct ctcgtgaatg gtatgcaact
    24121 gacatgcgcg atctctggcg agagtctggc gtatcgcttt actggagata cgccagaaca
    24181 gtggttagcg agttttcgtc agcatcgctg ggacctggaa gaagaagcgg aaaacttaat
    24241 tcaggaacaa agtgaagatg atcaaggctg ggtctggtta ccctgatcca gatattcgtc
    24301 cttccatttc acgtaattat tcgcggaata gcgtaaccca gccttctctt catcacttaa
    24361 cgggcggatc tgtttgacgg ggctaccgag atacagatat ccgctctcca gccgtttatt
    24421 ttgtgggacc agactacccg caccaatcat cacatcatct tctactattg cgccatcaag
    24481 taaaattgag cccatcccaa ccaaaactcg attgccaatg gtgcagccgt ggagcatcac
    24541 cttgtgacca acagtgacat cttcgccaat ggttaatggg ttgccatctg ggttgtacga
    24601 ggatttatga gtgacatgca acatactgcc atcctggata ttggtgcgtg ctccgatctg
    24661 tacataatgt acatctccac gaatcacaac gagcggccag atccccacat catcagccag
    24721 acgaacgcca ccaatcacga cactgctatc gtcgatcatt acgcgctgac cgatttgtgg
    24781 aaaaagatcg cggtatgggc gtaaaacatc agacatactt acctcagcaa taaatgattt
    24841 actaatgact ttgggggcat tattggcctt gtgcaagtct tttagtatgc aaaaaagcac
    24901 cgttttgtgt gcgattgcag caaaaagggt gaaaaaacaa caaacagaaa aaaagatcaa
    24961 aaaaatactt gtgcaaaata ttgggatccc tataatgcgc ctccgttaag acgacaacgt
    25021 gaaacacttc acaggatggt cggaacaacg aagagaaaaa atcctgaaat tcagggttga
    25081 ctctgaaaga ggaaagcgta atatacgcca cctcgcgaca gtgagctgaa agccgcgtca
    25141 caactgctct ttaacaattt atcagacaat ctgtgtgggc actcgaagat acggattctt
    25201 aacgtcgcaa gacgaaaaat gaataccaag tctcaagagt ga
//
LOCUS       DADMJB010000044        25118 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.044, whole genome shotgun sequence.
ACCESSION   DADMJB010000044 DADMJB010000000
VERSION     DADMJB010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25118)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25118)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25118
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.044"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..393
                     /gene="hyfA"
                     /locus_tag="JN078_001643"
     CDS             <1..393
                     /gene="hyfA"
                     /locus_tag="JN078_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit HyfA"
                     /protein_id="HAY9040889.1"
                     /translation="QLNESLCIGCKLCAVVCPFGAISASGSRPVNAPAQYVFQADGSL
                     KDGEENAPTQHALLRWEPGVQTVAVKCDLCNFLPEGPACVRACPNQALRLITDDSLQR
                     QMKEKQRLAASWFANGGEDPLSLTQEQH"
     gene            393..2410
                     /gene="hyfB"
                     /locus_tag="JN078_001644"
                     /pseudo
     CDS             393..2410
                     /gene="hyfB"
                     /locus_tag="JN078_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311371.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit B"
     gene            2421..3368
                     /gene="hyfC"
                     /locus_tag="JN078_001645"
     CDS             2421..3368
                     /gene="hyfC"
                     /locus_tag="JN078_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311372.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit HyfC"
                     /protein_id="HAY9040890.1"
                     /translation="MRQTLCDGYLVIFALAQAVILLLLTPLFTGISRQIRARMHSRRG
                     PGIWQDYREIHKLFKRQEVAPISSGLMFRLMPWVLISSMLVLAMALPLFITVSPFAGG
                     GDLITLIYLLALFRFFFALSGLDTGSPFAGVGASRELTLGILVEPMLILSLLVLALIA
                     GSTHIEMISNTLATGWNSPLTTVLALLACGFACFIEMGKIPFDVAEAEQELQEGPLTE
                     YSGAGLALAKWGLGLKQVVMAALFVALFLPFGRAQELSLACLLTSLVVTLLKVLLIFV
                     LASIAENTLARGRFLLIHHVTWLGFSLAALAWVFWLTGL"
     gene            3385..3495
                     /locus_tag="JN078_001646"
     CDS             3385..3495
                     /locus_tag="JN078_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000429114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoin racemase"
                     /protein_id="HAY9040891.1"
                     /translation="MENLALTTLMLPFIGALVVSFSPQRRAAEWGFCSPH"
     gene            3507..4614
                     /locus_tag="JN078_001647"
                     /pseudo
     CDS             3507..4614
                     /locus_tag="JN078_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001442177.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit D"
     gene            4626..5276
                     /gene="hyfE"
                     /locus_tag="JN078_001648"
     CDS             4626..5276
                     /gene="hyfE"
                     /locus_tag="JN078_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 membrane subunit"
                     /protein_id="HAY9040892.1"
                     /translation="MIGSMIVNNLAGLMMLTSLFVISVKSYRLSCGFYACQSLVLVSI
                     FATLSCLFAAEQLLIWSASAFITKVLLVPLIMTYAARNIPQNIPEKALFGPAMMALLA
                     ALIVLLCAFVVQPVKLPMATGLKPALAVALGHFLLGLLCIVSQRNILRQIFGYCLMEN
                     GSHLVLALLAWRAPELVEIGIATDAIFAVIVMVLLARKIWRTHGTLDVNNLTALKG"
     gene            5281..6861
                     /gene="hyfF"
                     /locus_tag="JN078_001649"
     CDS             5281..6861
                     /gene="hyfF"
                     /locus_tag="JN078_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit F"
                     /protein_id="HAY9040893.1"
                     /translation="MSYSVMFALLLLTPLLFSLLCFACRKRGLSATCTVTVLHSLGIT
                     LLLILALWVVQTAADAGEIFAAGLWLHIDGLGGLFLAILGVIGFLTGVYSIGYMRHEV
                     AHGELSPVTLCDYYGFFHLFLFTMLLVVTSNNLIVMWAAIEATTLSSAFLVGIYGQRS
                     SLESAWKYIIICTVDVAFGLFGTVLVYANAASVMPQAEMAIFWSEVLKQSSLLDPTLM
                     LLAFVFVLIGFGTKTGLFPMHAWLPDAHSEAPSPVSALLSAVLLNCALLVLIRYYIII
                     CQAIGSDFPNRLLLIFGMLSVAVAAFFILVQRDIKRLLAYSSVENMGLVAVALGIGGP
                     LGIFAALLHTLNHSLAKTLLFCGSGNVLLKYGTRDLNVVCGMLKIMPFTAVLFGGGAL
                     ALAGMPPFNIFLSEFMTVTAGLARNHLLIIVLLLLLLTLVLAGLVRMAARVLMAKPPK
                     AVNRGDLGWLTTSPMVILLVMMLAMGTHIPQPVIRILAGASTIVLSGTHDLPAQRSTW
                     HDFLPSGTASVSEKHSER"
     gene            6851..8566
                     /gene="hyfG"
                     /locus_tag="JN078_001650"
     CDS             6851..8566
                     /gene="hyfG"
                     /locus_tag="JN078_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 catalytic subunit HyfG"
                     /protein_id="HAY9040894.1"
                     /translation="MNVNSSSNSGEAILAALKTQFPGAVLDEERQTPEQVTITVKINL
                     LPDVVHYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSR
                     EFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLHKDAMDYRL
                     RPEPTTDSETYAFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYV
                     HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSI
                     LLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGG
                     VRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPV
                     GPLIRGSGFARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFA
                     LDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW
                     PVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRN
                     RSPLK"
     gene            8576..9115
                     /gene="hyfH"
                     /locus_tag="JN078_001651"
     CDS             8576..9115
                     /gene="hyfH"
                     /locus_tag="JN078_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit H"
                     /protein_id="HAY9040895.1"
                     /translation="MLKLLKTIMRAGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG
                     ACACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKA
                     DLYTRATFHLQRCSRCERPFAPQKTVALAAELLAQQQNAPQNREMLRAQASVCPECKQ
                     RATLINDDTDVPLVAKEQL"
     gene            9112..9870
                     /gene="hyfI"
                     /locus_tag="JN078_001652"
     CDS             9112..9870
                     /gene="hyfI"
                     /locus_tag="JN078_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 catalytic subunit HyfI"
                     /protein_id="HAY9040896.1"
                     /translation="MSPVLTQHVSQPITLDEQTQKMKRHLLQDIRRSAYVYRVDCGGC
                     NACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH
                     KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQ
                     QKIHAVDYRDPTGVTMQPLWPQIPPSQRIAIEREARRLAGYRQGREICDRLLRHLSDD
                     PTGNRVNTWLRDADDPRLNSIVQQLFRVLRGLHD"
     gene            9863..10276
                     /gene="hyfJ"
                     /locus_tag="JN078_001653"
     CDS             9863..10276
                     /gene="hyfJ"
                     /locus_tag="JN078_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416985.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 assembly chaperone HyfJ"
                     /protein_id="HAY9040897.1"
                     /translation="MTEECGEIVFWTLRKKFVASSDEMPEHRSQVMYYSLAIGHHVGV
                     IDCLNVAFRCPLTENEDWLAQVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFALLA
                     DDATSVWQARSIQFIHLLDEIVQEPAIYLMARKIA"
     gene            10306..12318
                     /locus_tag="JN078_001654"
                     /pseudo
     CDS             10306..12318
                     /locus_tag="JN078_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416986.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent Fis family transcriptional
                     regulator"
     gene            12340..13184
                     /locus_tag="JN078_001655"
                     /pseudo
     CDS             12340..13184
                     /locus_tag="JN078_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311381.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter"
     gene            complement(13222..14283)
                     /locus_tag="JN078_001656"
     CDS             complement(13222..14283)
                     /locus_tag="JN078_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HAY9040898.1"
                     /translation="MLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLV
                     AIVLAYLLEWPTVRLQSIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRD
                     MPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLL
                     TIAVYLVLVPLMVFFLLKDKEQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVL
                     EMIVVGIATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGT
                     EFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPL
                     ATLIKAVIHAWPDGQIAQE"
     gene            14496..15959
                     /gene="bepA"
                     /locus_tag="JN078_001657"
     CDS             14496..15959
                     /gene="bepA"
                     /locus_tag="JN078_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-barrel assembly-enhancing protease"
                     /protein_id="HAY9040899.1"
                     /translation="MFRQLKKNLVATLIAAMTIGQVAPAFADNADTLPDMGTSAGSTL
                     SIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINND
                     EINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHLTQRHLARAMEDQQRSTPLT
                     WVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFD
                     PQAMPTFLEKLLDQARYSSRPPEILLTHPLPESRLADARNRANQMRPMVVQSSEDFYL
                     AKARTLGMYNSGRNQLTSDLLDEWAKGNVRQQRAAQYGRALQAMEANKYDEARKTLQP
                     LLAAEPGNAWYLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQLNLANAYLQGGQP
                     QEAANILNRYTFNNKDDSNGWDLLAQAEAALNNRDQELAARAEGYALAGRLDQAISLL
                     SSASSQVKLGSLQQARYDARIDQLRQLQERFKPYTKM"
     gene            15980..16339
                     /gene="arsC"
                     /locus_tag="JN078_001658"
     CDS             15980..16339
                     /gene="arsC"
                     /locus_tag="JN078_001658"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311384.1"
                     /note="This arsenate reductase requires both glutathione
                     and glutaredoxin to convert arsenate to arsenite, after
                     which the efflux transporter formed by ArsA and ArsB can
                     extrude the arsenite from the cell, providing resistance;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (glutaredoxin)"
                     /protein_id="HAY9040900.1"
                     /translation="MTKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAAT
                     LRDLLKMLGMNSARELMRQKEDLYKELNLADSSLSEEALIQAMVDNPKLMERPIVVAN
                     GKARIGRPPEQVLEIVG"
     gene            complement(16477..17223)
                     /gene="hda"
                     /locus_tag="JN078_001659"
     CDS             complement(16477..17223)
                     /gene="hda"
                     /locus_tag="JN078_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA inactivator Hda"
                     /protein_id="HAY9040901.1"
                     /translation="MVNFSRFCEILVEVSLNTPAQLSLPLYLPDDETFASFWPGDNSS
                     LLAALQNVLRQEHSGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVP
                     EVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNL
                     GLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRT
                     LFMTLDQLDRASITAQRKLTIPFVKEILKL"
     gene            complement(17273..18562)
                     /gene="uraA"
                     /locus_tag="JN078_001660"
     CDS             complement(17273..18562)
                     /gene="uraA"
                     /locus_tag="JN078_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil permease"
                     /protein_id="HAY9040902.1"
                     /translation="MTRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPA
                     TVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFC
                     LVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTII
                     ISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTL
                     YTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVI
                     SGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVM
                     GGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGM
                     ALATIVGIGLSLIFKLISVLRPEEVVLDAEEADITDK"
     gene            complement(18648..19274)
                     /gene="upp"
                     /locus_tag="JN078_001661"
     CDS             complement(18648..19274)
                     /gene="upp"
                     /locus_tag="JN078_001661"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HAY9040903.1"
                     /translation="MKIVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEAT
                     ADLETEKVTIEGWNGPVEIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMY
                     RNEETLEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLV
                     AAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK"
     gene            19598..20635
                     /gene="purM"
                     /locus_tag="JN078_001662"
     CDS             19598..20635
                     /gene="purM"
                     /locus_tag="JN078_001662"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HAY9040904.1"
                     /translation="MTDKTSLSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGG
                     FGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEP
                     LFFLDYYATGKLDVDTASAVISGIAEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFC
                     VGVVEKSEIIDGSKVSDGDVLIALGSSGPHSNGYSLVRKILEVSGCDPQTTELDGKPL
                     ADHLLAPTRIYVKSVLELIEKVDVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQW
                     PEVFNWLQTAGNVERHEMYRTFNCGVGMIIALPAPEVDKALALLNANGENAWKIGIIK
                     ASDSEQRVVIE"
     gene            20635..21273
                     /gene="purN"
                     /locus_tag="JN078_001663"
     CDS             20635..21273
                     /gene="purN"
                     /locus_tag="JN078_001663"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HAY9040905.1"
                     /translation="MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLE
                     RARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAG
                     RLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGD
                     TEDDVTARVQTQEHAIYPLVISWFADGRLKIHENAAWLDGQRLPPQGYAADE"
     gene            21445..23511
                     /gene="ppk1"
                     /locus_tag="JN078_001664"
     CDS             21445..23511
                     /gene="ppk1"
                     /locus_tag="JN078_001664"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HAY9040906.1"
                     /translation="MGQEKLYIEKELSWLSFNERVLQEAADKSNPLIERMRFLGIYSN
                     NLDEFYKVRFAELKRRIIISEEQGSNSHSRHLLGKIQSRVLKADQEFDGLYNELLLEM
                     ARNQIFLINERQLSVNQQNWLRHYFKQYLRQHITPILINPDTDLVQFLKDDYTYLAVE
                     IIRGDTIRYALLEIPSDKVPRFVNLPPEAPRRRKPMILLDNILRYCLDDIFKGFFDYD
                     ALNAYSMKMTRDAEYDLVHEMEASLMELMSSSLKQRLTAEPVRFVYQRDMPNALVEVL
                     REKLTISRYDSIVPGGRYHNFKDFINFPNVGKANLVNKPLPRLRHIWFDKAQFRNGFD
                     AIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHN
                     GKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFLISRKENGEVV
                     RYAHIGTGNFNEKTARLYTDYSLLTADARITNEVRRVFNFIENPYRPVTFDYLMVSPQ
                     NSRRLLYEMVDREIANAQQGLPSGITLKLNNLVDKGLVDRLYAASSSGVPVNLLVRGM
                     CSLIPNPEGISDNIRAISIVDRYLEHDRVYIFENGGDKKVYLSSADWMTRNIDYRIEV
                     ATPLLDPHLKQRVLDIIDILFSDTVKARYIDKELSNRYVPRGNRRKVRAQLAIYDYIK
                     SLEQPE"
     gene            23516..25057
                     /gene="ppx"
                     /locus_tag="JN078_001665"
     CDS             23516..25057
                     /gene="ppx"
                     /locus_tag="JN078_001665"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HAY9040907.1"
                     /translation="MPIHDKSPRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQR
                     VHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFL
                     KRVEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI
                     LVESRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLETLTWQFRIQGWNVAMGASG
                     TIKAAHEVLMEMGEKDGIITPERLEKLVKEVLRHRNFASLSLPGLSEERKTVFVPGLA
                     ILCGVFDALAIRELRLSDGALREGVLYEMEGRFRHQDVRSRTASSLANQYHIDSEQAR
                     RVLDTTMQMYEQWREQQPKLAHPQLEALLRWAAMLHEVGLNINHSGLHRHSAYILQNS
                     DLPGFNQEQQLMMATLVRYHRKAIKLDDLPRFTLFKKKQFLPLIQLLRLGVLLNNQRQ
                     ATTTPPTLTLITDDSHWTLRFPHDWFSQNALVLLDLEKEQEYWEGVAGWRLKIEEEST
                     PEIAA"
BASE COUNT         5718 a         6576 c         6684 g         6140 t
ORIGIN      
        1 caactcaacg aaagcctctg tattggctgc aagctttgcg ccgtggtctg cccatttggc
       61 gcaatcagcg cttcaggaag ccgtccggtg aatgcccctg cgcaatatgt ttttcaggct
      121 gacggctcac tcaaagatgg cgaagaaaac gcgccgaccc aacatgcttt gctgcgctgg
      181 gaaccgggtg tccagaccgt cgcggtgaaa tgcgacctgt gtaatttctt gccagaaggt
      241 ccggcctgcg ttcgcgcttg cccgaatcag gcgttacggc tgattaccga cgatagcctg
      301 caacgtcaga tgaaagaaaa acagcgcctt gccgcaagct ggtttgccaa tggcggggag
      361 gatccccttt ccctcactca ggagcaacac taatggatgc cctgcaatta ttaacctggt
      421 cgctgatcct ctttctgttt gccagtctgg cttcgctgtt tttactcggt ctggacagac
      481 tggctattaa gctttccggc atcacatcgc tggtgggcgg cgtgattggc atcatcagcg
      541 gaattacgca attacatgct ggtgtaactt tagtcgcccg ttttgccacc ccttttgact
      601 ttgccgattt aaccctgcga atggatagcc tctcggtatt tatggtgctg gttatctcct
      661 tgctggtggt ggtttgttcg ctctattcat tgacttatat gcgcgaatac gagggcaaag
      721 gcgcggcggc gatgggcttc tttatgaatc ttttcatcgc atcgatggtt gccctgctgg
      781 tgatggacaa cgctttttgg ttcatcgtgc tgtttgaaat gatgtcgctg tcttcctggt
      841 ttctggtcat tgccaggcag gataaaacgt cgatcaacgc tggcatgctc tactttttta
      901 tcgcccacgc cggatcggtg ctgattatga tcgccttctt gctgatgggg cgcgaaagcg
      961 gcagcctcga ttttgccagt ttcgcacgct ttcactttct ccggggctgg cgtcggcgat
     1021 gtttctgctg gcctttttcg gttttggcgc gaaagccggg atgatgccgt tgcacagctg
     1081 gttgccgcgc gctcaccctg ccgcaccatc gcacgcttcg gcgttgatgt ctggcgtaat
     1141 ggtcaaaatc ggtattttcg gcatcctgaa agtagcgatg gatctgctgg cgcaaacggg
     1201 tttgcctctg tggtggggca ttctggtgat ggcgatcggc gcaatctccg cgctcctggg
     1261 cgtgctatat gcgctggcgg aacaggatat caaacggctg ctggcctgga gtaccgtcga
     1321 aaacgtcggc attattttgc tggcagtcgg tgtggcgatg gacggtctgt cactgcacga
     1381 cccgctgctc accgtggttg gactgctcgg cgcactgttt catctgctca accatgcgct
     1441 gttcaaaggg ctgctatttc tcggcgcggg cgcgattatt tcgcgtttgc atacccacga
     1501 catggaaaaa atgggggcac tggcgaaacg gatgccgtgg acagccgcag catgcctgat
     1561 tggttgcctc gcgatatcag ccattcctcc gctgaatggt tttatcagcg aatggtacac
     1621 ctggcagtcg ctgttctcac taagtcgtgt ggaagccgta gcgctacaac ttgcgggtcc
     1681 tattgctatg gtaatgctgg cagtcactgg tgggctggca gtaatgtgct tcgtcaaaat
     1741 gtacggtatt actttctgtg gtgcgccgcg cagtacacac gctgaagagg cacaggaagt
     1801 gccaaatacg atgatcgtcg ccatgctact gctcgcggca ctctgcgtat taattgcgct
     1861 tagtgccagt tggctggcac cgaagataat gcatattgcc catgcgttta ccaatacccc
     1921 tcccgtcact gtcgccagcg gaatagcact tgtacccggc acgtttcata cacgggtcac
     1981 tccttcatta ctgttgctgt tactactggc gatgcctttg ctgcctggcc tttactggct
     2041 gtggtgtcgt tcgcgccgcg cagcgtttcg tcgcacagga gatgcctggg catgcggcta
     2101 cggctgggaa aacgcgatgg ctccgtcagg caatggcgtg atgcagccgc tgcgtgtggt
     2161 cttctctgcg ttatttcgtc tacgacaaca gctcgaccct acgctgaggc taaataaaga
     2221 tcttgcgcac gtcaccgcca gggctcagag cacagaaccc ttctgggatg agcgggtgat
     2281 ccgccccatc gtgagcgcca cccaacggct ggccaaagaa atacagcatc tgcaaagcgg
     2341 cgactttcgt ctctattgcc tgtatctagt tgccgcactg gttgtgctgc taatcgctat
     2401 tgccgtctaa ggaaatcacc atgagacaaa ctctttgcga cggatatctg gtcatttttg
     2461 cgttagcaca ggccgtgatt ctgctgctgc taaccccgct ttttacgggt atttcccggc
     2521 agatacgcgc gcgtatgcac tcccgccgcg ggccggggat ctggcaggat tatcgcgaga
     2581 tccacaaact gtttaaacgc caggaagttg cgcctatatc ttcaggtctg atgttccgcc
     2641 tgatgccgtg ggtattaatc agcagcatgc tggtgctggc gatggcccta ccacttttta
     2701 ttaccgtttc cccttttgcg ggcggcggcg atctgatcac ccttatctat cttcttgccc
     2761 tgtttcgttt tttctttgct ctttccggac tggataccgg aagcccgttt gcgggagtcg
     2821 gtgccagtcg cgagttgacg ctcggcattc tggtcgaacc catgctcatt ctctcactgc
     2881 tggtattggc gctgatagca ggttccacgc atatcgagat gatcagcaat acgctggcaa
     2941 cgggctggaa ctcgccgcta accaccgtac tggcgttact ggcctgtggt tttgcctgct
     3001 tcattgagat gggaaaaatt ccctttgatg ttgctgaagc agaacaggaa ttacaggaag
     3061 gcccgctgac cgaatattcc ggtgccgggc tggcgctagc gaaatggggg ctggggctga
     3121 aacaggtcgt gatggcagca ctgtttgtgg ccctgtttct gccctttggg cgcgcgcaag
     3181 aactttctct cgcctgcctg ctgacttcac ttgtcgttac gctgctcaag gttttgctga
     3241 tttttgtact ggcctcaatc gcagaaaaca cgctggcacg cgggcgtttt ttactcattc
     3301 accatgtgac ctggcttggc ttcagccttg ctgcgcttgc atgggtcttc tggttaaccg
     3361 gtctgtaagg agcactgacg gaatatggaa aatcttgctc tgacgacgtt aatgctgcct
     3421 tttatcggcg cactggtcgt ttcgttttcg ccacaacgtc gggccgccga atgggggttt
     3481 tgttcgccgc actgaccacg ctgtgcatgt tgtcgctgat ctccgcgttt tatcaggccg
     3541 ataaagttgc cgtcacgttg acgttggtca acgtggggga tgtggcattg tttggcctgg
     3601 tcattgatcg cgtgagtacg ctgattctgt ttgtggtggt gtttctcggt ttgctggtca
     3661 cgatctactc cacgggttat ctgacggata aaaatcgcga acacccgcat aacggcacga
     3721 atcgttatta cgcatttttg ctggtgttta tcggcgcgat ggcgggactg gtactctcct
     3781 cgacgctgct cggtcagttg ttgttttttg aaattagggc ggctgctcct gggcgttgat
     3841 cagttattac cagagcgata aagcgcagcg ttcaacacta aaagcgttgc ttatcaccca
     3901 tatcggttcg ttggggttgt atcttgccgc cgccacgctg tttttgcaga ccggaacgtt
     3961 tgtgcttagc gcgatgagcg agttacatgg cgacgcacgt tatctggttt atggcggcat
     4021 cctgtttgcc gcgtggggga aatcggccca gctaccgatg caagcgtggc taccggacgc
     4081 aatggaagcg ccaacaccga tcagagccta tctccacgcc gcatcgatgg tgaaagtggg
     4141 cggctggcac tggagggcag catcgcctac atcgtcaacc acgcgttcgc taaaagcctg
     4201 tttttccttg tagcaggtgc gctgagttac agctgcggca cgcgcttgtt gccgcgtctg
     4261 cgtggcgtat tgcactccct gccgttgcca ggcgtgggtt tctgcgtggc agcgctggcg
     4321 attaccggtg tgccgccgtt caacggcttc ttcagtaaat tcccgctgtt tgccgccggt
     4381 tttgcgttgt cagtggagta ctggatcctg ctgcccgcca tgattctgct gatgattgaa
     4441 tcggtcgcca gtttcgcctg gtttattcgc tggtttggtc gcgttgtgcc tggcaaaccg
     4501 agcgaggccg tcgccgatgc cgcaccgctg ccagggtcaa tgcgcctggt gttgattgta
     4561 ctgattgtga tgtcgctgat ttccagcgta atcgccgcga cctggttgca gtaaggagat
     4621 gatgaatgat cggttctatg atcgtaaata atctggcggg actgatgatg ctgacatcgc
     4681 tgtttgtgat tagcgtcaaa agctatcgcc tgtcatgcgg attttacgcc tgccagtcgc
     4741 tggtgctggt gtctattttc gccactctct cgtgcctgtt cgccgcagag caactgctga
     4801 tctggtccgc cagcgccttt atcaccaaag tgctgctggt accgttaatc atgacttacg
     4861 ctgcacgaaa tattccccag aacatcccgg aaaaagcgtt attcggtccg gcaatgatgg
     4921 cactgctcgc ggcgttaatt gtcctgcttt gcgcatttgt cgttcagccc gtgaagctac
     4981 cgatggctac cgggctgaaa ccggcgctgg cggtagcgtt aggtcatttt ctgcttggcc
     5041 tgctgtgcat tgtcagccag cgcaatatcc tgcggcaaat ttttggttac tgcctgatgg
     5101 aaaacggctc ccatctggtg ctggcgcttc ttgcctggcg agcaccggaa ctggtggaaa
     5161 taggtatcgc taccgacgcc atcttcgccg tcattgtgat ggtgttactg gcaagaaaaa
     5221 tatggcgtac ccacggcacg ctggacgtga acaacttgac cgcgctgaag ggataatgag
     5281 atgagttatt ctgtgatgtt cgctttactc ctgctcacgc cgctgctttt ttcgctgctc
     5341 tgttttgcct gccggaaacg ggggctctct gcgacttgta cggtgactgt attacatagc
     5401 ttagggatca cactgctgct gattctggca ctctgggtgg tccaaactgc cgctgatgca
     5461 ggagaaatat tcgctgcggg actgtggctt catattgatg gtctgggcgg tttgttcctc
     5521 gccattcttg gtgtgattgg ctttctcacc ggtgtttact cgattggcta catgcgtcat
     5581 gaagtggcac acggcgagct ttcacccgtt acactgtgcg attactacgg tttcttccat
     5641 ctgtttttgt tcaccatgct gctggttgtt accagcaata acctgattgt gatgtgggcg
     5701 gcgatcgaag ccaccacctt aagctcggcg tttctggtag gcatttacgg tcagcgttca
     5761 tcgctggaat cagcatggaa gtacatcatt atttgtactg ttgatgtcgc ttttggtctg
     5821 ttcggtaccg tgctggtata cgccaacgcc gccagcgtta tgccgcaggc agaaatggcg
     5881 atattctgga gcgaggttct taagcaatcg tccttgcttg acccaacatt aatgctgttg
     5941 gcctttgtgt ttgtgctaat tggctttggt accaaaaccg ggctatttcc catgcacgcc
     6001 tggctgccgg atgctcacag tgaagcgccg agtccggtca gcgccctgct ctccgccgta
     6061 ttgctgaact gcgcgctgtt ggtgctgatt cgctattaca tcattatttg ccaagccatc
     6121 ggcagcgatt tccccaaccg gttgttgctc atcttcggca tgttgtcggt tgccgtggcg
     6181 gcatttttca ttctggtaca gcgggacatt aagcgtctgc tggcgtactc cagcgtggag
     6241 aacatggggc tggtcgcggt ggcgctaggc attggcgggc cgctgggaat ttttgccgcg
     6301 ctgctgcaca ccttaaacca cagtctggca aaaacgctgc tgttctgcgg ttccggcaat
     6361 gtactgctca agtacggcac gcgcgatctc aacgtcgtct gtgggatgct caaaatcatg
     6421 ccatttaccg ccgtgctgtt tggcggcggt gcgctggcgc tggcagggat gccgcccttc
     6481 aacatttttc ttagcgaatt tatgaccgtt accgcaggac tggcacgtaa tcacctgctg
     6541 attatcgtcc tgctgttatt gctgttaacg ctggtgctgg cgggcctggt acggatggct
     6601 gcgcgggtgt taatggcgaa accgccgaag gccgttaacc ggggtgatct cggctggttg
     6661 accacctcgc caatggtgat tctgctggtc atgatgctgg cgatgggaac gcatattcca
     6721 caacctgtca tcaggatcct ggcgggcgct tccactatag tcctctcagg gacgcacgac
     6781 ctgcctgcac aacgtagcac ctggcatgat tttttgcctt caggcaccgc atctgtttcg
     6841 gagaaacaca gtgaacgtta attcatcgtc aaatagtggc gaagcgattc tcgccgccct
     6901 gaaaacgcag ttccccggcg cggtactgga tgaagagcga caaacgcctg aacaggtcac
     6961 cattacggtg aaaatcaatc tgctgcctga cgttgtacat tatctttatt atcaacatga
     7021 tggctggctt ccagtcctgt ttggcaacga cgagcggaca cttaacggtc attacgcggt
     7081 ttattatgcc ctttcaatgg aaggggccga aaaatgctgg atcgtggtga aggcactggt
     7141 cgatgccgac agtcgggagt ttccgtcagt cacaccgcgc gtccctgccg cggtctgggg
     7201 cgagcgagaa attcgcgata tgtacgggct gattccggtt ggcctgccgg atcagcgtcg
     7261 cctggtgttg cccgatgact ggccggaaga tatgcatccg ctgcacaaag atgcgatgga
     7321 ttatcgactg cgccctgaac cgacgacaga ttccgaaacg tatgcgttta tcaatgaggg
     7381 caacagcgat gcgcgggtga tccctgtcgg cccgctgcat atcacctccg atgaaccggg
     7441 tcacttccgc ttgtttgtgg atggcgagca aattgtcgat gctgattacc gcctgtttta
     7501 tgtccatcga ggcatggaga aactggcaga aacgcggatg ggctacaacg aagtgacctt
     7561 cttatcggac cgcgtgtgtg ggatttgcgg ttttgcccac agtgtggcct ataccaactc
     7621 ggttgaaaat gcactgggga ttgaggtgcc gcaacgagcg cataccattc gctcgattct
     7681 gctggaagtc gaacggctac acagtcattt gctcaacctt ggcctctcct gccattttgt
     7741 tggttttgat accggcttta tgcaattttt ccgcgtgcgg gaaaagtcga tgacgatggc
     7801 ggaattgctg accgggtcgc gtaaaaccta cggtctgaat ctgattggtg gtgttcgccg
     7861 cgatattctc aaagagcaac gtctgcaaac gctgaaactg gtgcgcgaga tgcgcgccga
     7921 cgtgtcggag ctggtagaga tgctgcttgc tacgccgaat atggaacaac gcactcaggg
     7981 cattggcatt ctcgaccgac aaatcgcccg tgattatagc cctgtagggc cgctgatccg
     8041 cggcagtggt tttgcccgtg atttgcgctt tgatcacccc tacgccgact acggcaatat
     8101 tccaaaaaca ctgtttacct tcaccggcgg cgatgttttc tcccgcgtga tggtccgtgt
     8161 caaagagacg tttgattcgc tggcaatgct ggaatttgcc ctcgacaaca tgccggatac
     8221 cccactgctg accgaaggct ttagctataa acctcacgca ttcgcgctgg gctttgttga
     8281 agcgccacgc ggtgaagacg tgcactggag catgctcggt gataaccaaa aattgttccg
     8341 ctggcgctgc cgtgccgcca cctacgccaa ctggccggtg ttgcgttaca tgctgcgcgg
     8401 caataccgtt tctgacgcac cgctgattat cggtagcctt gatccctgct actcctgtac
     8461 cgaccgtgtg acgctggtag atgtgcgcaa gcgccagtca aaaaccgtgc cgtataaaga
     8521 gatcgaacgc tacggcattg atcgtaaccg ttcgccgctg aagtaaggac agaagatgct
     8581 gaagttactg aaaactatta tgcgcgccgg aaccgcgacg gtgaaatatc ccttcgcgcc
     8641 actggaggtc agcccaggct ttcgcgggaa accggacctg atgcccagcc aatgtattgc
     8701 ctgcggcgcc tgtgcttgtc cggcaaatgc gctgactatc cagaccgacg accagcaaaa
     8761 ttcgcgcacc tggcagctct atctggggcg ttgtatttac tgcggacgtt gtgaagaagt
     8821 gtgcccgacc agagccatcc agcttaccaa taactttgaa ctgaccgtca ccaataaagc
     8881 cgatctctat acccgcgcga cgttccatct acaacgttgc agccgttgcg aacgcccgtt
     8941 tgccccgcaa aaaaccgtcg cactggctgc tgaattgttg gcacagcaac aaaatgcgcc
     9001 acaaaaccgc gaaatgttgc gggcgcaagc gagcgtctgc ccggagtgca aacaacgcgc
     9061 gacgctgatc aacgacgata cagatgtacc gctggtggct aaggagcagc tatgagtcca
     9121 gtgcttacac aacatgtcag ccagcccatc acgctggatg agcaaacgca aaagatgaag
     9181 cggcatttgc tacaggatat ccgtcgctca gcctacgttt atcgcgtcga ttgcggcggc
     9241 tgcaacgcct gtgaaatcga aatttttgct gccatcaccc ccgtattcga cgcagaacgt
     9301 tttggcatta aggttgtttc atcaccgcgt cacgccgata ttttgttatt tactggcgca
     9361 gtcacccggg cgatgcgtat gcctgcactt cgggcgtatg agtctgcccc cgatcataaa
     9421 atctgtgttt cctacggcgc gtgcggtgtc ggcggcggta ttttccacga tctctacagc
     9481 gtctggggcg gcagcgacac cattgtcccc attgatgttt ggatccccgg ctgcccgcca
     9541 acaccggccg ccaccattca cggtttcgcc gtggcgctcg gtttgctgca acagaagatt
     9601 cacgctgtgg attatcgcga tcccaccggg gtgactatgc aaccgttgtg gccacagatc
     9661 ccgccatcac agcgtatcgc cattgagcga gaagcgcggc ggctggcggg ctatcgtcag
     9721 gggcgagaaa tttgcgatcg gctcctgcgc catttaagcg acgatcctac aggaaatcgg
     9781 gttaacacct ggttgcgcga tgccgacgat ccacgtctca atagtatcgt tcagcaactc
     9841 tttcgcgtac tccgggggtt acatgactga agagtgcggg gaaattgttt tctggacgct
     9901 gcgaaaaaag tttgtcgcca gtagcgacga gatgccggaa caccgctctc aggtaatgta
     9961 ttactcgctg gctatcggcc atcacgttgg cgtgattgat tgtctgaatg tcgccttccg
    10021 ctgcccactg acggaaaacg aagattggct tgcacaggtc gaagaggagc aagcccgacg
    10081 taagatgctg ggggtgatga cctttggtga gattgttatt gacgccagcc acaccgccct
    10141 gttgacccgg gcattcgcgc tactggcaga tgacgcgacg tctgtgtggc aggcgcgtag
    10201 cattcaattc attcatctgt tggatgaaat tgtgcaggaa ccggccatct atctgatggc
    10261 cagaaaaatt gcgtgagaag gatttctcat taataaggac tgttgatggc tatgtcagac
    10321 gaggcgatgt ttgccccgcc acaaggaata acaattgaag cggtaaacgg aatgctcgcg
    10381 gagcggttag cacagaaaca cggtaaggcg tctttattac gcgccttcat cccgatgccg
    10441 ccgccgttca gcccggtaca acttattgaa ctgcatgtta tcaaaagcaa cttctattac
    10501 cgctaccatg atgatggcag cgatgtgacg gcaacaacag agtatcaggg cgagatggtc
    10561 gattattcgc gtcacgccgt ccttctcggc agtagtggaa tggcggagct acgctttatt
    10621 cgtacccacg gcagccgttt tactccctag gattgcacac tgtttaactg gctggcacgc
    10681 attatcactc cggttctgca atcatggctc aatgatgaag aacaacaggt ggcgctgcgt
    10741 ttgctggaga aagatcgcga tcatcatcgg gtactggttg atattactaa tgcagtgctg
    10801 tcacatcttg atctcgacga tctgatcgct gacgtcgctc gtgagatcca tcattttttc
    10861 ggtctggctt cagtcagtat ggtactgggc gatcatcgaa agaacgagaa gtttagcctg
    10921 tggtgcagcg atctttctgc ctcacattgt gcgtgtctgc cacgcaatat gcctggcgac
    10981 agtgtattgc tgacacaaac gctacaaacc cgacaaccga ccttgacgca ccgtgcagac
    11041 gatctgtttc tctggcaacg cgacccgtta ttactcttac ttgcatctaa cggctgcgaa
    11101 tctgcgctcc ttataccgct tacctttggc aaccatacac cgggtgcatt gttgctggcg
    11161 catacctctt ccactctctt tagtgaggaa aactgccagc tactacaaca catagccgat
    11221 cgcatcgcta ttgccgttgg caatgccgat gcctggcgta gcatgaccga tttgcaggaa
    11281 agtttgcagc aagaaaacta ccagcttagc gagcagctcc tttcgaatct gggcatcggt
    11341 gacattatct atcaaagcca ggcaatggaa gacctgctcc agcaggtaga tattgtagcg
    11401 aagagcgaca gtacggtgtt gatttgtggt gaaaccggaa ccggcaaaga ggtgatcgcc
    11461 agagcgctcc atcaacttag cacgcgacgc gacaaaccgc tggtcaaaat caactgcgct
    11521 gccatccccg ccagtcttct ggaaagtgag ttattcggtc atgacaaagg ggcgtttact
    11581 ggtgcgatta atacacatcg tggtcgtttt gaaattgccg atggcggcac gttgtttctc
    11641 gatgaaattg gcgatctgcc gttagaactt cagcctaaac tgctgcgcgt attgcaggaa
    11701 cgggagattg agcgtctcgg cgggagtaga acgatcccgg tgaatgtcag agtcattgcc
    11761 gccaccaacc gtgatttgtg gcaaatggtt gaagatcgcc agtttcgcag caatctcttt
    11821 tatcgcctga atgtcttccc attggaattg ccgccgctac gcgaccgtcc ggaagatatc
    11881 cctcttttag caaaacattt cacgcaaaaa atggcgcgcc atatgaatcg cgcaattgac
    11941 gccatcccga ccgaggcgct acgccagttg atgtcgtggg actggccggg caacgtgcac
    12001 gagctggaaa acgtgattga gcgagcggta ctgctgactc gcggtaacag tctgaattta
    12061 catcttaatg tccgacaaag ccgtttactg ccgacgctaa atgaagattc agcgcttcgc
    12121 agttcaatgg cgcagttgct gcacccgacg acgccagaga atgacgaaga agaacgtcag
    12181 cgcattgttc aggtattgcg agaaaccaat ggcattgttg ccgggccccg tggcgcggcg
    12241 acacgattag ggatgaagcg caccacgctg ctgtcacgaa tgcagcgtct ggggatctcg
    12301 gttcgcgagg tgttgtaatc tgcttttgca ggagtatgca tgagaaacaa actctctttc
    12361 gacttgcagt tgagcgccag aaaagcggca atcgctgaac ggattgccgt ccataaaatt
    12421 gcccgcagta aagtgtcggt ctttttaatg gcgatgtccg ctggcgtgtt tatggcgatc
    12481 ggatttactt tttacctttc cgttatcgcc gatgccccgt cttcacaggc attaacccat
    12541 ctggtgggcg gcctttgctt tacactcggc tttattttgc tggcggtttg cggcacagcc
    12601 tgttcacctc gtcggtaatg acggtgatag caaaaagtcg gggcgttatt agttggcgaa
    12661 cttggctgat taacgcactt ctggtggcct gtggtaatct ggcaggtatt gcctgtttca
    12721 gtttgttaat ctggttttcc gggctggtga tgagtgaaaa cgcgatgtgg ggagtcgcgg
    12781 ttttacactg cgccgagggc aaaatgcatc atacatttac tgaatctgtc agcctcggca
    12841 ttatgtgcaa tctgatggtt tgcctggcgc tgtggatgag ttattgcggg cgttcgttat
    12901 gcgacaaaat cgtcgccatg attttgccca tcaccctgtt tgtcgccagt ggctttgagc
    12961 actgtatcgc caatttgttt gtgattccgt tcgccattgc cattcgccat ttcgcccccc
    13021 ccttctggca actggcgcac agtagcgcag acaattttcc ggcactgacg gtcagccatt
    13081 ttattaccgc caatctgctc ccggtgatgc tgggtaatat tatcggcggt gcagtgctgg
    13141 tgagtatgtg ttatcgggct atttatttac gtcaggaatc ctgaaaaatc agcccggcga
    13201 aacagttcgt cgggctgaag attattcttg cgcgatttgc ccatcgggcc aggcgtggat
    13261 cacggctttg atcagcgtcg ccaatggaat ggcgaagaat acgccccaga atccccacaa
    13321 accaccgaag atcaccaccg ataaaataat caccagcgga tgcaggttaa ccgcttcgga
    13381 gaacaacacc ggtactagca ggttgccgtc cagcgcctga ataatcagat acaccgcgaa
    13441 gcagctccag aattccgtgc ctgcgccaaa ctggaatagc gccacgccaa ccaccggaat
    13501 ggtcaccaca aatgcgccaa tgtacggaat aagaaccgag aagccgacca gcaccgccag
    13561 cagcagcgaa tagttcagcc caaagagcaa gaaccccagc caggtggcga tccccaccac
    13621 gatcatctcc agcactttgc cgcggatata gttggtgatt tgttgattca tctccttcca
    13681 cacctgtcct gccagtccac ggttgcgcgg cagcacccga cgaacggcgt tcagcatctg
    13741 ctctttgtct ttcagcagga agaagaccat caatggcacc agcaccagat agacggcaat
    13801 ggtcagcaaa ccgaccagcg aggcgaggga aattttcacc accgaatcgc ccatggtcag
    13861 catccgactg cgcatatttt cggccattgc atcaataatg cccgcgtcca ttaacgccgg
    13921 atagcggcgc ggcaacgtgg cggcaaagtc agaaagctta ttgagcatcc ccggcatatc
    13981 gcggattaag tagatgccct gttgccaggc gataggcagt accacgaacg ccatcagtag
    14041 caatataccg acaaaaacca ccaatacaat cgacgtcgcc cagcggcggg agcagccaat
    14101 agattgcagg cgcacggttg gccattccag caaataggcc agcacaatag ccaccagcaa
    14161 cggagcaagc aggccactaa agaaaaagat aatgccaaat ccggcaacta aaataaccag
    14221 caaggcaatc gcttccgggt cgctaaaacg gcggcgatac cattgcatca acatttcgag
    14281 cataaaaacc ttccctgaac ctcaagagcg ggattgcgat ccgcaattgt atcgaaatgt
    14341 cacaaaaaag acttcgcttt ttatgacgga ttcaggaaac tgaaaagtca tttgagtggg
    14401 ctaatcttcg ccgttacact caaaggcggc gcggtgggaa cgatatttca cagtatcggt
    14461 caaatgacta tcttcagaaa tacaggatag aggttatgtt caggcagttg aaaaaaaacc
    14521 tggttgcaac cctcattgct gctatgacca ttggtcaggt agccccggcg tttgccgaca
    14581 acgcagacac cttgccggat atgggaacct ccgcaggaag cacgctttcc attggtcagg
    14641 aaatgcagat gggcgactat tatgtccgcc agctacgcgg cagcgcgccg ttaattaatg
    14701 acccgctgtt aacgcaatat attaattcgc tggggatgcg tctggtttcg catgccaatt
    14761 cggttaagac accgtttcat ttttttctaa tcaacaacga cgaaattaac gcctttgctt
    14821 tctttggcgg caacgtggtg ctgcactctg ccctgttccg ttattccgat aacgaaagtc
    14881 aactggcttc agttatggcg cacgaaatct cccacctcac ccaacgtcac ctggcgcgag
    14941 cgatggaaga tcagcagcgc agcacgccgc tgacctgggt cggcgcgtta ggttctattt
    15001 tactggcgat ggccagtccg caggcgggga tggcggcgct gaccggtaca ctggcgggaa
    15061 cgcgtcaggg gatgatcagt ttcacccagc aaaatgaaca ggaagcggac cgcattggta
    15121 ttcaggtgct gcaacgctcg ggattcgatc cgcaggcgat gccaaccttc ctcgaaaaat
    15181 tactcgatca ggcgcgttac tcctcgcgcc cgccggaaat tttattgact cacccgttgc
    15241 cggaaagtcg tctggcagat gcccgcaacc gtgctaatca gatgcgaccg atggtggtgc
    15301 agtcgtcgga agatttctat ctggcgaaag cgcgcacact ggggatgtat aattccggac
    15361 gtaaccagct caccagtgat ttgctggatg aatgggcgaa aggaaacgtt cgtcagcaac
    15421 gagcggcgca atatggtcgt gctttacagg cgatggaagc caataaatac gacgaggcgc
    15481 gtaaaacgct gcaaccgtta ctggcggcag aacctggcaa cgcatggtat ctcgatctgg
    15541 ctaccgatat cgatcttggg caaaacaaag ccaatgaggc aatcaatcgc ctgaaaaatg
    15601 cccgtgattt gcgcaccaat ccggtgttgc agctcaacct ggcaaacgct tatctgcaag
    15661 gcggtcaacc acaagaagcg gccaatattc tcaatcgcta cacctttaat aataaagatg
    15721 acagcaacgg ctgggattta ctggcacagg cggaagccgc gctaaataac cgcgatcagg
    15781 agctggctgc gcgagcagaa ggttatgcgc tcgccggacg actcgatcag gccatttcgc
    15841 tgttgagtag cgccagttcg caggtgaaat taggcagcct gcaacaagcg cgttacgatg
    15901 cgcgcatcga ccagttgcgc cagctgcagg aacgctttaa gccttatacc aagatgtaat
    15961 tcgcattaaa ggaagaacaa tgaccaaaca ggtaaaaatc taccataacc cacgctgttc
    16021 aaagagccgg gaaacgctga acctgctgaa agaaaacggc gtggagccag aagtggtact
    16081 ctaccttgag acacccgccg atgcggcaac gctgcgcgat ttgctgaaaa tgctggggat
    16141 gaatagcgcc cgtgaattga tgcgccagaa agaggatctt tataaagaac tgaacctggc
    16201 tgacagttcg cttagcgaag aggcgctgat tcaggcaatg gtggataatc cgaagctgat
    16261 ggagcgcccg attgtggtcg cgaatggcaa agcgcggatt ggtcgtccac cggagcaggt
    16321 actggaaatc gtgggttaag atgtgctcca tcgctagttg aagcacattg ccggatgcga
    16381 cgcttgccat gtcttatccg gcctacgaat actatggatt aacttcgcgt agttcggata
    16441 aggcgttcgc gccgcatccg acaataaaca ccttatctac aacttcagaa tttctttcac
    16501 aaacggaatg gtcagcttac gttgcgcggt aatcgacgca cgatccaact gatccaacgt
    16561 cataaatagc gtgcgcattt ctctgtcgag ccgcttcagc aagaaacgcc ccacatcttc
    16621 cggcagttca aaaccacgca aacgcgcgcg taactgtagc gcctgcaact tatcttcatc
    16681 agaaagtggc tgcaatttgt agatctgccc ccagtcgagt cgcgacgcga gatccggtaa
    16741 tcccagattc aactgccgcg gtggacgatc gccggtgatc aacaaccgtg ttttgcccga
    16801 ttccagaatt cgattgtaga gatcgaaaat cgccatctcc cacaactcat cgcctgcaat
    16861 acactcaatg ttgtcgatac aaaccagcga caaatgctcc ataccgtcga gcacttccgg
    16921 aacaaaccaa gtgcgtttat ccagcgggac atagcccacc gcatcgccac gctgcgacaa
    16981 ttccgcgcaa gccgcgtgca gcagatggct gcgccccgcg ccttcgcgtg cccagagata
    17041 gatgtaaccg ctatgttcct gacgcagcac gttttgcagc gcggccagta aagaggagtt
    17101 atcccccggc cagaaacttg caaaggtttc gtcgtcagga agataaagtg gcaaagagag
    17161 ctgtgccggt gtgttcagag atacctcaac caggatttca caaaatcgcg agaagtttac
    17221 cacagaatcc catgatgttt gaaccgggca gcaacactgc ccggtcggta cattatttgt
    17281 ctgttatatc cgcctcttct gcgtccagca ccacttcttc agggcgcagc acactgatca
    17341 gtttgaaaat caaacttaag ccgataccga cgatggtcgc cagcgccata ccttttaact
    17401 ccgccgcgcc gatgtttacc ttcgcgccac tgacgccgat gatcaaaatc acggaagtca
    17461 ggatcaggtt ctgtgctttg ttgtaatcca ctttcgattc gatcaaaaca cgaataccgg
    17521 aagcaccgat gacaccataa agcagcagcg aaacgccgcc catcaccggc aatgggatca
    17581 tctggatagc ggcagccagt ttaccgacgc aggaaagcag gatagcgaaa atcgccgccc
    17641 cgccgataac ccaggtactg taaacacggg tgatcgccat cacgccaatg ttttctccgt
    17701 aagtggtatt tggcgtggag ccaaagaagc cggagatcac ggtcgacagg ccgttagcaa
    17761 acatcgaacg gtgcagacct ggatcgcgca gcagatcttt tttgacgata ttagccgtta
    17821 ctaccaggtg ccctacgtgt tcggcaataa ccactaacgc cgctggcaga atagtcagaa
    17881 tggcaaacca ctcgaagcgc ggcgtataga gggttggcag cgcaaaccag tgagcattaa
    17941 taatcggcgt ggtatcgaca attcccattg cgaaagagag cgcgtagccc accagcacgc
    18001 caattaaaat cgggataatt gccaggaaac cacgaaacag cacggaacct aaaaccgtga
    18061 ccgccagggt ggtaatagag atgatgatgg ttttggagtc tggcgtttgc ccttcagccg
    18121 ggagtaaacc cgccataccg gcagctacgc ccgccagctc cagaccgatg acggcaacga
    18181 ttgcgcccat tgccgcaggt ggaaacagca cgtccagcca gccggtcccc gctttcttca
    18241 cgataaaaga aaccaggcag aacagcacgc cgcacataat aaagccgccc agcgcgactt
    18301 cataccctaa cggcaacagt aacaataccg gtgaaataaa ggcaaagctg gaaccaagat
    18361 aagccggaat tttcccttta cagatgaaga gatacagcag cgttccaata ccgttaaata
    18421 acagtacagt cgccgggtta atatgaaata agacgggcac caggacggtt gcaccaaaca
    18481 tggcgaacaa atgttgcaaa ctaagcggga ttgtctgtaa aagtggcggt ctttcactca
    18541 ccccgatagc acggcgcgtc atagtattat cctctgtatt atgtgttata ggcgctttac
    18601 tcaaaaaaaa gccgactctt aaagtcggct ttaattattt ttattcttta tttcgtacca
    18661 aagattttgt caccggcatc gccgaggccc ggaataatgt atccgtgctc gttcagtccc
    18721 tgatcaatcg atgcggtata cagttcgacg tccgggtgcg ctttttccag cgcagcgata
    18781 ccttctggcg cagcgaccag caccagaact ttgatgctgc tgcagcccgc ttttttcagc
    18841 aggtcgatgg tcgcgataac ggaaccaccg gttgccagca ttgggtcaac gatcagcgcc
    18901 atacgctcat cgatgttaga aaccagtttc tggaagtacg gtaccggctc cagcgtttct
    18961 tcattacggt acataccgac aacgctgatg cgcgcgctcg gaacattttc cagcacaccg
    19021 tccatcatac caagacccgc acgcagaatt ggcacaacgg taattttctt acctttgatc
    19081 tggtcgattt ctaccgggcc gttccagcct tcgatagtta ctttttccgt ttcgaggtcg
    19141 gcggtcgctt cgtaagtcag caggctaccc acttcggaag cgagttcgcg aaagcgcttg
    19201 gtgctgatat cttgctcacg catcagtccc agcttgtgtt tgacgagtgg gtgtttgact
    19261 tccacgatct tcatactctt tctcctttga ggggcagcca caaaaaaatc gacggattat
    19321 acctcctttc ttcaaggcgg caatattctt ttcgttgact ttagtcaaaa tgataacgat
    19381 ttgagataaa gttattttat attcaaatgg ttatgaaaga agatcattcc atccgaaaac
    19441 taacctttgc cctggcacaa gtcttctttc gccgcgcgtc tggggaaaag acgtgcaaaa
    19501 aggttgtgca aagcagcctc gcaaacgttt gctttccctg ttagaattgc gccgaatttt
    19561 atttttctac cgcaagtaac gcgtggggac ccaagcagtg accgataaaa cctctcttag
    19621 ctacaaagat gccggtgttg atattgacgc gggtaatgct ctggttggaa gaatcaaagg
    19681 cgtagtgaag aaaacgcgtc gtccggaagt gatgggcggt ctgggcggct tcggtgcgct
    19741 gtgtgcattg ccgcaaaaat atcgtgaacc cgtgctggtt tccggcactg acggcgtagg
    19801 taccaagctg cgtctggcaa tggacttaaa acgtcacgac accattggta ttgatctggt
    19861 cgccatgtgc gttaatgacc tggtggtgca aggtgcagaa ccgctgtttt tcctcgacta
    19921 ttacgcaacc ggaaaactgg atgttgatac cgcttcagcg gtgatcagcg gcatcgcgga
    19981 aggttgtctg caatcgggct gttcactggt gggtggcgaa acggcagaaa tgccggggat
    20041 gtatcacggt gaagattacg atgtcgcggg tttctgcgtg ggcgtggtag aaaaatcaga
    20101 aatcatcgac ggctctaaag tcagcgacgg cgatgttctg attgcactcg gttccagcgg
    20161 tccgcactcg aacggctatt cgctggtgcg caaaattctt gaagtcagcg gttgtgatcc
    20221 gcaaaccacc gaacttgatg gtaagccatt agccgatcat ctgctggcac cgacccgcat
    20281 ttacgtgaag tcagtgctgg agttgattga aaaggtcgat gtgcatgcca ttgcgcacct
    20341 gaccggcggc ggcttctggg aaaacattcc acgcgtattg ccagataata ctcaggcagt
    20401 gattgatgaa tcttcctggc agtggccgga agtgttcaac tggctgcaaa cggcaggtaa
    20461 cgttgagcgc catgaaatgt atcgcacctt caactgcggc gtcgggatga ttattgccct
    20521 gcctgctccg gaagtggaca aagccctcgc cctgctcaat gccaacggtg aaaacgcgtg
    20581 gaaaatcggt atcatcaaag cctctgattc cgaacaacgc gtggttatcg aataatgaat
    20641 attgtggtgc ttatttccgg taacggaagt aatttacagg caattattga cgcctgtaaa
    20701 accaacaaaa ttaaaggcac cgtacgggca gttttcagca ataaggccga cgcgttcggc
    20761 cttgaacgcg cccgccaggc gggtattgca acgcatacgc tcatcgccag cgcgtttgac
    20821 agtcgtgaag cctatgaccg ggagttgatt catgaaatcg acatgtacgc acccgatgtg
    20881 gtcgtgctgg ctggttttat gcgcattctc agcccggcgt ttgtctccca ctatgccggg
    20941 cgtttgctga acattcaccc ttctctgctg ccgaaatatc ccggattaca cacccatcgt
    21001 caggcgctgg aaaatggcga tgaagagcac ggtacatcgg tgcatttcgt caccgatgaa
    21061 ctggacggtg gcccggttat tttacaggcg aaagtcccgg tatttgctgg tgatacggaa
    21121 gatgacgtca ccgcccgcgt gcaaacccag gaacacgcta tttatccact ggtgattagc
    21181 tggtttgccg atggtcgtct gaaaatacac gaaaacgccg cgtggctgga tggtcaacgt
    21241 ctgccgccgc agggctacgc tgccgacgag taatgccccc gtagttaaag cgccagctct
    21301 gccgctggcg tttttcaatt cacctgtaaa tcgcaagctc cagcagtttt tttccccctt
    21361 ttctggcata gttggacatc tgccaatatt gctcgccata atatccaggc agtgtcccgt
    21421 gaataaaacg gagtaaaagt ggtaatgggt caggaaaagc tatacatcga aaaagagctc
    21481 agttggttat cgttcaatga acgcgtgctt caggaagcgg cggacaaatc taacccgctg
    21541 attgaaagga tgcgtttcct ggggatctat tccaataacc ttgatgagtt ctataaagtc
    21601 cgcttcgctg aactgaagcg acgcatcatt attagcgaag aacaaggctc caactctcat
    21661 tcccgccatt tactgggcaa aattcagtcc cgggtgctga aagccgatca ggaattcgac
    21721 ggcctctaca acgagctatt gctggagatg gcgcgcaacc agatcttcct gattaatgaa
    21781 cgccagctct ccgtcaatca acaaaactgg cttcgtcatt attttaagca gtatctgcgt
    21841 cagcacatta cgccgatttt aatcaatcct gacactgact tagtgcagtt cctgaaggat
    21901 gattacacct atctggcggt ggaaattatc cgtggagaca ccatccgtta cgcgctgctg
    21961 gagatcccat cagataaagt gccgcgcttt gtgaatttac cgccagaagc gccgcgtcga
    22021 cgcaagccga tgattcttct ggataacatt ctgcgttact gccttgatga tattttcaaa
    22081 ggcttctttg attatgacgc gctgaatgcc tattcaatga agatgacccg cgatgccgaa
    22141 tacgatttag tgcatgagat ggaagccagc ctgatggagt tgatgtcttc cagtctcaag
    22201 cagcgtttaa ctgctgagcc ggtgcgtttt gtttatcagc gcgatatgcc caatgcgctg
    22261 gttgaagtgt tacgcgaaaa actgactatt tcccgctacg actccatcgt ccccggcggt
    22321 cgttatcata attttaaaga ctttattaat ttccccaatg tcggcaaagc caatctggtg
    22381 aacaaaccac tgccgcgttt acgccacatt tggtttgata aagcccagtt ccgcaatggt
    22441 tttgatgcca ttcgcgaacg cgatgtgttg ctctattatc cttatcacac ctttgagcat
    22501 gtgctggaac tgctgcgtca ggcttcgttc gacccgagcg tactggcgat taaaattaac
    22561 atttaccgcg tggcgaaaga ttcacgcatc atcgactcga tgatccacgc cgcacataac
    22621 ggtaagaaag tcactgtggt ggttgagtta caggcgcgtt tcgacgaaga agccaacatt
    22681 cactgggcga agcgcctgac cgaagcaggc gtgcacgtta tcttctctgc gccggggctg
    22741 aaaattcacg ccaaactgtt cctgatttca cgtaaagaaa acggtgaagt ggtccgttac
    22801 gcacacatcg ggaccgggaa ctttaacgaa aaaaccgcgc gtctttatac tgactattcg
    22861 ttgctgaccg cagatgcgcg tatcaccaac gaagtacggc gggtatttaa ctttattgaa
    22921 aacccatacc gcccagtgac atttgattat ttaatggtgt caccgcaaaa ctctcgccgt
    22981 ctgttatatg aaatggtaga ccgcgaaatc gccaacgcgc agcaagggct gcccagtggt
    23041 atcaccctga agctaaataa ccttgtcgat aaaggcctgg ttgatcgtct gtatgcggcc
    23101 tccagctccg gcgtaccggt taatctgctg gttcgcggaa tgtgttcgct gatccccaat
    23161 ccggaaggca ttagcgacaa cattcgtgcc atcagtattg ttgaccgtta ccttgaacat
    23221 gaccgggttt atatttttga aaatggcggc gataaaaagg tctacctttc ttccgccgac
    23281 tggatgacgc gcaatattga ttatcgtatt gaagtggcga caccgctgct cgatccgcac
    23341 ctgaagcagc gggtgctgga catcatcgac atattgttca gcgatacggt caaagcacgt
    23401 tatatcgata aagaactcag taatcgctac gttccccgcg gcaatcgccg caaagtacgg
    23461 gcgcagttgg cgatttacga ctacatcaaa tcactcgaac aacctgaata accctatgcc
    23521 aatacacgat aaatcccctc gtccgcagga gtttgctgcg gtcgatcttg gttcaaacag
    23581 ttttcacatg gtcatagccc gtgtggtaga tggtgccatg cagattattg gccgcctgaa
    23641 acagcgagtg catctggcgg acggcctggg gccagataat atgttgagtg aagaggcaat
    23701 gacgcgcggt ttgaactgtc tgtcgctgtt tgccgaacgg ctacaagggt tttctcctgc
    23761 cagcgtctgt atagtcggca cccatacgct gcgtcaggcg ctgaacgcca ctgactttct
    23821 gaaacgcgtg gaaaaggtca ttccctaccc gattgaaatt atttccggta atgaagaagc
    23881 ccgtctgatt tttatgggcg tggaacatac ccaaccggag aaaggtcgca aactggttat
    23941 tgatattggc ggcggatcta cggaactggt gattggtgaa aatttcgaac cgattctcgt
    24001 tgaaagccgc cggatgggtt gtgtcagctt tgcccagctt tacttccctg gcggggtcat
    24061 caataaagag aattttcagc gcgctcgtat ggcggcagca caaaaactgg aaactttaac
    24121 ctggcaattc cgtattcagg gctggaacgt ggcaatgggc gcttccggta ccataaaagc
    24181 cgcccatgaa gtgttaatgg aaatgggcga gaaagacggg ataattaccc cggaacgtct
    24241 ggaaaaactg gtaaaagaag ttttacgtca ccgtaatttc gcatcgctga gtttaccggg
    24301 tctttccgaa gagcggaaaa cagtcttcgt tcctggactg gcgattttat gcggtgtgtt
    24361 tgatgcttta gccatccgtg aactgcgcct ttctgacggg gcgttacgcg aaggcgtact
    24421 gtacgaaatg gaaggacgtt tccgtcatca ggatgtgcgt agtcgcaccg ccagcagcct
    24481 cgccaaccag tatcacatcg acagcgaaca ggcccgacgg gtgctggata ccactatgca
    24541 aatgtacgaa cagtggcggg aacagcaacc gaagctggcg catccgcaac tggaggcgct
    24601 actgcgatgg gccgccatgc tgcatgaggt cgggttgaat atcaaccaca gcggtttgca
    24661 tcgccactcc gcttatattc tgcaaaacag tgacttgccg ggttttaatc aggaacagca
    24721 gctgatgatg gcgacactgg tgcgctatca ccgcaaagcg attaaactcg acgatctgcc
    24781 gcgctttacc ttgtttaaga agaaacagtt cctgccactg attcagctat tgcgccttgg
    24841 cgtattactc aacaatcaac gtcaggcaac caccacaccg ccaacattga cactgattac
    24901 tgatgacagt cactggacac tgcgtttccc gcatgactgg tttagtcaga atgcgttggt
    24961 actgcttgat ctggaaaagg agcaagaata ctgggaaggc gtggctggct ggcggttgaa
    25021 aattgaagaa gaaagtacac ctgaaatcgc cgcttaatgc tttgcgggcc gacgagaaat
    25081 gtcggcccgc attattcagg cactttcgcg aatgggtt
//
LOCUS       DADMJB010000045        25003 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.045, whole genome shotgun sequence.
ACCESSION   DADMJB010000045 DADMJB010000000
VERSION     DADMJB010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25003)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25003)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25003
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.045"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..808
                     /locus_tag="JN078_001666"
     CDS             <1..808
                     /locus_tag="JN078_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sugar porter family MFS transporter"
                     /protein_id="HAY9040908.1"
                     /translation="PRWLMSRGKQEQAESILRKIMGNTLATQAVQEIKHSLDHGRKTG
                     GRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVIN
                     LTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAF
                     AMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHN
                     GFSYWIYGCMGVLAALFMWKFAPETKGKTLEELEALWEPETKKTQQTATL"
     gene            complement(852..1250)
                     /gene="psiE"
                     /locus_tag="JN078_001667"
     CDS             complement(852..1250)
                     /gene="psiE"
                     /locus_tag="JN078_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-starvation-inducible protein PsiE"
                     /protein_id="HAY9040909.1"
                     /translation="MTSLSRPRVEFISTILQTVLNLGLLCLGLILVVFLGKETVHLAD
                     VLFAPEQTSKYELVVYFLYFEFIALIVKYFQSGFHFPLRYFVYIGITAIVRLIIVDHK
                     SPLDVLIYSAAILLLVITLWLCNSKRLKRE"
     gene            complement(1376..1519)
                     /locus_tag="JN078_001668"
     CDS             complement(1376..1519)
                     /locus_tag="JN078_001668"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040910.1"
                     /translation="MFQRNIVDFSRIAGGWESPEWVIFELPAWVRFVLPDAPPGAAYP
                     AYG"
     gene            1520..1798
                     /locus_tag="JN078_001669"
     CDS             1520..1798
                     /locus_tag="JN078_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040911.1"
                     /translation="MKRNLIKVVKMKPYFAALMLSVSVLPAYAGPLGTADKADLPQSN
                     VSSPMMAQSLRQPDLQPISTDRKTECFRLYTPDRKPGVNCVPDGSTGH"
     gene            complement(1845..3941)
                     /locus_tag="JN078_001670"
     CDS             complement(1845..3941)
                     /locus_tag="JN078_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbH domain-containing protein"
                     /protein_id="HAY9040912.1"
                     /translation="MKKRHLLSLLALGISMACYGETYPAPIGPSQSDFGGVGLLQTPT
                     ARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTY
                     KDKAFDLKLRLWEESYWLPQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGY
                     LGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRL
                     KLEYEGNNYQQDFAGKLEQKSKFNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFN
                     DLRPSYNDNARPQYQPQPQDAILQHSVVANQLTLLKYNVGLADPQIQAKGDTLYVTGE
                     QVKYRDSREGIIRANRIVMNDLPDGIKTIRITENRLNMPQVTTETDVASLKNHLAGEP
                     LGHETKLAQKRVEPVVPQSTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVMG
                     MADLWLTDHLLTTGSLFANLANNYDKFNYTNPPQDSHLPRVRTHVREYVQNDVYVNNL
                     QANYFQHLGNGFYGQVYGGYLETMFGGAGAEVLYRPLDSNWAFGLDANYVKQRDWRSA
                     KDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVV
                     GGYATITNVLKEEYGEGDFTKGVYVSVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGR
                     KFQLYDMTSDRSVNFR"
     gene            complement(3941..4678)
                     /locus_tag="JN078_001671"
                     /pseudo
     CDS             complement(3941..4678)
                     /locus_tag="JN078_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418452.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis GfcC family protein"
     gene            complement(4675..5313)
                     /locus_tag="JN078_001672"
     CDS             complement(4675..5313)
                     /locus_tag="JN078_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbF family lipoprotein"
                     /protein_id="HAY9040913.1"
                     /translation="MKRPALILICLLLQACSATTKELGNSLWDSLFGTPGVQLTDDDI
                     QNMPYASQYMQLNGGPQLFVVLAFAEDGQQKWVTQDQATLVTQHGRLVKILLGGDNLI
                     EVNNLAADPLIKPAQIVDGATWTRTMGWTEYQQVRYATARSVFKWDGTDTVKVGSDET
                     LVRVLDEEVSTDQARWHNRYWIDSEGQIRQSEQYLGADYFPVKTTLIKAAKQ"
     gene            complement(5427..5669)
                     /locus_tag="JN078_001673"
     CDS             complement(5427..5669)
                     /locus_tag="JN078_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040914.1"
                     /translation="MKKVLYGIFAISALAATSAWAAPVQVGEAAGSAATSVSAGSSSA
                     TSVSTVSSAVGVALAATGGGDGSNTGTTTTTTTSTQ"
     gene            complement(6131..7780)
                     /gene="pgi"
                     /locus_tag="JN078_001674"
     CDS             complement(6131..7780)
                     /gene="pgi"
                     /locus_tag="JN078_001674"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HAY9040915.1"
                     /translation="MKNINPTQTAAWQALQKHFDEMKDVTIADLFAKDGDRFSKFSAT
                     FDDQMLVDYSKNRITEETLAKLQDLAKECDLAGAIKSMFSGEKINRTENRAVLHVALR
                     NRSNTPILVDGKDVMPEVNAVLEKMKTFSEAIISGEWKGYTGKAITDVVNIGIGGSDL
                     GPYMVTEALRPYKNHLNMHFVSNVDGTHIAEVLKKVNPETTLFLVASKTFTTQETMTN
                     AHSARDWFLKAAGDEKHVAKHFAALSTNAKAVGEFGIDTANMFEFWDWVGGRYSLWSA
                     IGLSIVLSIGFDNFVELLSGAHAMDKHFSTTPAEKNLPVLLALIGIWYNNFFGAETEA
                     ILPYDQYMHRFAAYFQQGNMESNGKYVDRNGNVVDYQTGPIIWGEPGTNGQHAFYQLI
                     HQGTKMVPCDFIAPAITHNPLSDHHQKLLSNFFAQTEALAFGKSREVVEQEYRDQGKD
                     PATLDYVVPFKVFEGNRPTNSILLREITPFSLGALIALYEHKIFTQGVILNIFTFDQW
                     GVELGKQLANRILPELKDDKEISSHDSSTNGLINRYKAWRG"
     gene            8305..9654
                     /gene="lysC"
                     /locus_tag="JN078_001675"
     CDS             8305..9654
                     /gene="lysC"
                     /locus_tag="JN078_001675"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-sensitive aspartokinase 3"
                     /protein_id="HAY9040916.1"
                     /translation="MSEIVVSKFGGTSVADFDAMNRSADIVLSDANVRLVVLSASAGI
                     TNLLVALAEGLEPGERFEKLDAIRNIQFAILERLRYPNVIREEIERLLENITVLAEAA
                     ALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDVA
                     ALAELAALQLLPRLNDGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVD
                     IWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFV
                     GSSKDPRAGGTLVCNKTENPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILAR
                     HNISVDLITTSEVSVALTLDTTGSTSTGDTLLTQSLLMELSALCRVEVEEGLALVALI
                     GNDLSKACGVGKEVFGVLEPFNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE"
     gene            9906..10178
                     /locus_tag="JN078_001676"
     CDS             9906..10178
                     /locus_tag="JN078_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3811 domain-containing protein"
                     /protein_id="HAY9040917.1"
                     /translation="MALPRITQKEMTEREQRELKTLLDRARIAHGRVLTNSETNSIKK
                     EYIDKLMVEREAEAKKARQLKKKQAYKPDPEASFSWSANTSTRGRR"
     gene            complement(10311..11183)
                     /gene="rluF"
                     /locus_tag="JN078_001677"
     CDS             complement(10311..11183)
                     /gene="rluF"
                     /locus_tag="JN078_001677"
                     /EC_number="5.4.99.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2604) synthase RluF"
                     /protein_id="HAY9040918.1"
                     /translation="MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD
                     QVKPGDIVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFP
                     IGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPIL
                     GTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPL
                     GEWRDLTDDELIDLFKLIENSSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASN
                     GKRFTSPGRKKKGR"
     gene            11531..12478
                     /locus_tag="JN078_001678"
     CDS             11531..12478
                     /locus_tag="JN078_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709812.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HAY9040919.1"
                     /translation="MENSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKR
                     GRDQGIVTIAINYDYNENLWLEQQLKQKFGLKDVVVVSGNDEDEETQLAMMGLHGAQL
                     LDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLT
                     YSAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISAYWDNLDVALVGIGSPAIR
                     DGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQAR
                     YSIGIAMSEEKYSGIVGALRGKYINCLVTNSSTAELLLK"
     gene            12548..13354
                     /locus_tag="JN078_001679"
     CDS             12548..13354
                     /locus_tag="JN078_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAY9040920.1"
                     /translation="MQTWLNLQDKIIIVTGGASGIGLAIVEELLAQGANVQMVDIHGG
                     DGQYEDHKGYQFWPTDISSAKEVNHTVAEIIQRFGRIDGLVNNAGVNFPRLLVDEKAP
                     AGQYELNEAAFEKMVNINQKGVFLMSQAVARQMVKQHDGVIVNVSSESGLEGSEGQSC
                     YAATKAALNSFTRSWSKELGKHGIRVVGIAPGILEKTGLRTPEYEEALVWTRNITVEQ
                     LREGYTKNAIPIGRAGRLAEVADFVCYLLSERASYITGVTTNIAGGKTRG"
     gene            13364..13771
                     /locus_tag="JN078_001680"
     CDS             13364..13771
                     /locus_tag="JN078_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sorbose transporter subunit IIA"
                     /protein_id="HAY9040921.1"
                     /translation="MVNAIFCAHGKLACAMLESVQMVYGDARVEAVEFVPGENAGDIV
                     AKLEKLVSIHNQDEWLIAVDLQCGSPWNAAAMLAMRNPRLRVISGLSLPLALELVDNQ
                     DSMNVDELCEHLTQIAKQTCVVWKQLATAEEDF"
     gene            13771..14265
                     /locus_tag="JN078_001681"
     CDS             13771..14265
                     /locus_tag="JN078_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system
                     mannose/fructose/N-acetylgalactosamine-transporter subunit
                     IIB"
                     /protein_id="HAY9040922.1"
                     /translation="MNITLARIDDRLIHGQVTTVWSKVANAQRIIICNDEVYNDEVRR
                     TLLRQAAPPGMKVNVVNIEKAVAVYHNPQYQDETVFYLFTRPQDALAMVRQGVKIDTL
                     NIGGMAWRPGKKQLTKAVSLDDDDINAFHELNNLGVILDLRVVASDPSINIIDKINEQ
                     LIAN"
     gene            14331..15128
                     /locus_tag="JN078_001682"
     CDS             14331..15128
                     /locus_tag="JN078_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HAY9040923.1"
                     /translation="MEISTLQIIAIFLFSCIAGMGSVLDEFQTHRPLIACTVIGLILG
                     DLKTGIILGGTLELIALGWMNVGAAQSPDSALASIISAILVIVGQQSIATGIAIALPV
                     AAAGQVLTVFARTITVVFQHAADKAAEEARFRTLDILHVSAFGVQALRVAIPALIVSL
                     FVSADMVSNMLSAIPEFVTRGLQIAGGFIVVVGYAMVLRMMGVKYLMPFFFLGFLAGG
                     YLDLSLLAFGGVGVIMALVYIQLNPQWRKAEPQLQATASTALDQLDD"
     gene            15139..15981
                     /locus_tag="JN078_001683"
     CDS             15139..15981
                     /locus_tag="JN078_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000437910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HAY9040924.1"
                     /translation="MEQRKITRSDLVSMFLRSNLQQASFNFERIHGLGFCYDMIPAIK
                     RLYPLKEDQVAALRRHLVFFNTTPAVCGPVIGVTAAMEEARANGAEIDDGTINGIKVG
                     LMGPLAGVGDPLVWGTLRPITTALGASLALSGNILGPLLFFFIFNAVRLAMKWYGLQL
                     GFRKGVNIVSDMGGNVLQKLTEGASILGLFVMGVLVTKWTSINVPLVVSQTHAADGST
                     VTMTVQNILDQLCPGLLALGLTLLMVRLLNKKINPVWLIFALFGLGIIGNALGFLSRF
                     FAPA"
     gene            16015..17244
                     /locus_tag="JN078_001684"
     CDS             16015..17244
                     /locus_tag="JN078_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HAY9040925.1"
                     /translation="MKTTALRLYGKRDLRLETFDLPEMQEDEILATVVTDSLCLSSWK
                     EANLGENHKKVPDDVATNPIIIGHEFCGDILAVGKKWQHKFQPGQRYVIQANLQLPDR
                     PDCPGYSFPWVGGEATHVVIPNEVMEQDCLLAYDGETYFEGSLVEPLSCVIGAFNANY
                     HLQEGSYNHTMGIRPQGRMLILGGTGPMGLLAIDYALHGPVNPSQLVITDTDNDKLSY
                     ARKHYPSEPQTLIHYLNAADAAFDTLMALSGGHGFDDIFVFVPNEGLVTLASSLLATD
                     GCLNFFAGPQDKHFSAPINFYDVHYAFTHYVGTSGGNTDDMRAAVKLIEEKKVQAAKV
                     VTHILGLNAAGETTLELPAVGGGKKLVYTGKYLPLTSLTQIQDQALAAILARHQGIWS
                     GEAEQYLLTHAEAISHD"
     gene            17627..18316
                     /gene="pepE"
                     /locus_tag="JN078_001685"
     CDS             17627..18316
                     /gene="pepE"
                     /locus_tag="JN078_001685"
                     /EC_number="3.4.13.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase PepE"
                     /protein_id="HAY9040926.1"
                     /translation="MELLLLSNSTLPGKAWLEHALPLIAEQLQGRRSAVFIPFAGVTQ
                     TWDDYTAKTAAVLAPLGVSVTGIHSVVDPVAAIENAEIVIVGGGNTFQLLKQCRERGL
                     LAPITDVVKRGALYIGWSAGANLACPTIRTTNDMPIVDPQGFDALNLFPLQINPHFTN
                     ALPEGHKGETREQRIRELLVVAPELTIIGLPEGNWITVSKGHATLGGPNTTYVFKAGE
                     EAVPLEAGHRF"
     gene            complement(18407..20038)
                     /locus_tag="JN078_001686"
     CDS             complement(18407..20038)
                     /locus_tag="JN078_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HAY9040927.1"
                     /translation="MLTLLHLLSAVALLVWGTHIVRTGVMRVFGARLRTVLSRSVEKK
                     PLAFCAGIGVTALVQSSNATTMLVTSFVAQDLVALAPALVIVLGADVGTALMARILTF
                     DLSWLSPLLIFIGVIFFLGRKQSRAGQLGRVGIGLGLILLALELIVQAVTPITQANGV
                     QVIFASLTGDILLDALIGAMFAIISYSSLAAVLLTAALTAAGIISFPVALCLVIGANL
                     GSGLLAMLNNSAANAAARRVALGSLLFKLVGSLIILPFVHLLAETMGKLSLPKAELVI
                     YFHVFYNLVRCLVMLPFVDPMARFCKTIIRDEPELDTQLRPKHLDVSALDTPTLALAN
                     AARETLRIGDAMEQMMEGLNKVMHGEPRQEKELRKLADDINVLYTAIKLYLARMPKEE
                     LAEEESRRWAEIIEMSLNLEQASDIVERMGSEIADKSLAARRAFSLDGLKELDALYEQ
                     LLSNLKLAMSVFFSGDVTSARRLRRSKHRFRILNRRYSHAHVDRLHQQNVQSIETSSL
                     HLGLLGDMQRLNSLFCSVAYSVLEQSDEDEGRDEY"
     gene            complement(20258..23941)
                     /gene="metH"
                     /locus_tag="JN078_001687"
     CDS             complement(20258..23941)
                     /gene="metH"
                     /locus_tag="JN078_001687"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000096005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HAY9040928.1"
                     /translation="MSSKVEQLRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFAD
                     WPCDLKGNNDLLVLSKPEVIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAE
                     INFAAAKLARACADEWTARTPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDQLV
                     AAYCESTKALVEGGADLILIETVFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDA
                     SGRTLSGQTTEAFYNSLRHAEALTFGLNCALGPDELRQYVQELSRIAECYVTAHPNAG
                     LPNAFGEYDLDADTMAKQIREWAQAGFLNIVGGCCGTTPQHIAAMSRAVEGLAPRKLP
                     EIPVACRLSGLEPLNIGDDSLFVNVGERTNVTGSAKFKRLIKEEKYSEAQDVARQQVE
                     NGAQIIDINMDEGMLDAEAAMVRFLNLIAGEPDIARVPIMIDSSKWDVIEKGLKCIQG
                     KGIVNSISMKEGVDAFIHHAKLLRRYGAAVVVMAFDEQGQADTRARKIEICRRAYKIL
                     TEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQDFIGACEDIKRELPHALISGGVSNVS
                     FSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAGQLAIYDDLPAELRDAVEDVILNRR
                     DDGTERLLELAEKYRGSKTDDTDNAQQAEWRSWEVNKRLEYSLVKGITEFIEQDTEEA
                     RQQATRPIEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFIEASK
                     EQGKTNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNA
                     DLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVY
                     VQNASRTVGVVAALLSDTQRDDFVARTRKEYETVRIQHGRKKPRTPPVTLEAARDNDF
                     AFDWQAYTPPVAHRLGVQEVEASIETLRNCIDWTPFFMTWSLAGKYPRILEDEVVGVE
                     AQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRVGDDIEIYRDETRTHVINVSHHLR
                     QQTEKTGFANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALADAFEAQHDDYNKIMV
                     KALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIRENYQGIRPAPGYPACPEHT
                     EKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQVEDYA
                     RRKGMSVSDVERWLAPNLGYDAD"
     gene            24141..24965
                     /gene="iclR"
                     /locus_tag="JN078_001688"
     CDS             24141..24965
                     /gene="iclR"
                     /locus_tag="JN078_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418442.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate bypass operon transcriptional
                     repressor IclR"
                     /protein_id="HAY9040929.1"
                     /translation="MVAPIPAKRGRKPAVATAPATGQVQSLTRGLKLLEWIAESNGSV
                     ALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAIGAHAFMVGSSFLQSRNLL
                     AIVHPILRNLMEESGETVNMEVLDQSDHEAIIIDQVQCTHLMRMSAPIGGKLPMHASG
                     AGKAFLAQLSEEQVTKLLHRKGLHAYTHATLVSPVHLKEDLAQTRKRGYSFDDEEHAL
                     GLRCLAACIFDEHREPFAAISISGPISRITDDRVTEFGAMVIKAAKEVTLAYGGMR"
BASE COUNT         5879 a         6611 c         6534 g         5979 t
ORIGIN      
        1 tcctcgctgg ctgatgtcac gcggcaagca agaacaggcg gaaagtatcc tgcgcaaaat
       61 tatgggcaac acgcttgcaa ctcaggcagt acaggaaatt aaacactccc tggatcatgg
      121 ccgcaaaacc ggtggtcgtc tgctgatgtt tggcgtgggc gtgattgtca tcggcgttat
      181 gctctccatc ttccagcaat ttgtcggcat caatgtggtg ctgtactacg cgccggaagt
      241 gttcaaaacg ctgggggcca gcacggatat cgcgctgttg cagaccatta ttgtcggagt
      301 tatcaacctc accttcaccg ttctggcaat tatgacggtg gataaatttg gtcgtaagcc
      361 actgcaaatt atcggcgcac tcggaatggc aatcggtatg tttagcctcg gtaccgcgtt
      421 ttacactcag gcaccgggta ttgtggcgct actgtcgatg ctgttctatg ttgctgcctt
      481 tgccatgtcc tggggtccgg tatgctgggt actgctgtcg gaaatcttcc cgaatgctat
      541 tcgtggtaag gcgctggcaa tcgcggtggc ggcccagtgg ctggcgaact acttcgtctc
      601 ctggaccttc ccgatgatgg acaaaaactc ctggctggtg gcccatttcc acaacggttt
      661 ctcctactgg atttacgggt gtatgggcgt tctggcagca ctatttatgt ggaaatttgc
      721 cccggaaacc aaaggtaaaa cccttgagga gctggaagcc ctctgggaac cggaaacgaa
      781 gaaaacacaa caaactgcta cgctgtaatc ttcctgtcca gcacgccgcg ccagttcggc
      841 gtgctgtctt tttactcccg cttcagccgt ttcgaattac acagccacag agtgatcacc
      901 agtaacagga tcgcagccga gtagatcaac acatccagtg gcgatttatg atcgacgatg
      961 atcaagcgca caatggcggt gatcccaata tagacaaagt aacgtagcgg gaagtgaaaa
     1021 ccggactgaa agtacttcac aatcagcgcg ataaattcga aatagagaaa gtaaaccacc
     1081 agctcatatt tgctggtttg ttctggcgcg aacagcacat ctgccagatg caccgtttct
     1141 ttgccgagga agacaaccaa aatcaggccg aggcacagca ggccaagatt gagtacggtc
     1201 tgcaaaatgg tggagataaa ctccacgcgc ggacgagaga gtgacgtcat agcagtacct
     1261 ccttcacagt ggcgagcttc ctgtataacg caaaaatgtg acggagatct atattttttg
     1321 tgtatgtttt gttcaacctg gatttggagc gcgcctccac caaagccgga tatacctacc
     1381 cgtaggccgg ataagccgcg cctggcggcg catccggcaa gacaaaccgc acccaagccg
     1441 gtaattcaaa aatcacccat tcaggtgatt cccagccacc agcaatgcgc gaaaaatcga
     1501 caatgttcct ctggaacaaa tgaaacgtaa cctgataaag gtggtaaaaa tgaagcctta
     1561 ttttgctgct ttgatgttat cagtctctgt tcttcctgct tatgctggtc cgctcggtac
     1621 tgctgataaa gccgacctac cgcaaagcaa tgtctccagc ccaatgatgg cccagtcgct
     1681 caggcaacca gacctgcaac cgatatcgac ggacaggaag acagaatgtt ttcgccttta
     1741 cacaccagat cgcaaaccgg gggtgaactg cgttcctgat ggctcgacag gccattaaga
     1801 atgaaggtgc cagtgagtgc gaaaactggc acctttccca tgacttagcg gaaattgacg
     1861 ctacggtcgc tggtcatgtc atacaactgg aacttacgcc caagttgctg accaccgtca
     1921 cgcgtcagcg gcgtccagcc aatcgccgca cggctgcgtg tcgggccaga cgagaagaga
     1981 tccaacggta ccgagacata cacgcctttg gtgaagtccc cttcgccgta ctcctctttc
     2041 aaaacgttgg tgatcgtggc atagccaccc accaccacgc cgctgtcaaa gcgtttggcg
     2101 atctccagcg tgccgccttt atcccctgcc agatactgcc cgacgctggc tttcaccaac
     2161 acgtcctggg cgaaagatgg cgtccagtag gcggtcagat gtccggtttt cacgctgtag
     2221 tcggtgaatt tcatcatatc ttttgcacta cgccagtcgc gctgtttaac gtagttggca
     2281 tccagaccaa acgcccagtt actgtccagc ggacgataca acacttcggc ccccgcaccg
     2341 ccaaacatgg tttcgagata acctccatag acctgaccgt agaagccgtt gcccagatgc
     2401 tggaagtagt tggcttgcag gttattcaca tagacatcgt tctgcacata ctcgcgcaca
     2461 tgggtacgaa cgcgcggtaa gtgcgagtcc tgcggcggat tggtgtagtt aaacttgtcg
     2521 tagttgttgg caagatttgc aaacaggctg ccggtggtca gcagatggtc cgtcagccac
     2581 aaatctgcca ttcccatcac gcccagctga tacatgtaaa agttttccgg gccaccgacc
     2641 gactggttca gcaccggatc gatatggaaa tcaaagcgtg atttgtcgat ataccagccc
     2701 tgctcggtgg actgcggaac cactggctcg acgcgttttt gcgccagctt cgtttcgtgg
     2761 cccaacggct ctccggcgag atgatttttc aggctggcga catcggtttc cgtcgtcacc
     2821 tgcggcatgt taagacgatt ttccgtaatg cggatcgttt tgatcccatc cggcagatcg
     2881 ttcatcacga tccgattagc acggatgatc ccttcgcgcg aatcacgata tttcacctgc
     2941 tcgccggtga catacagcgt atcgcctttc gcctggatct gcggatcggc aagtccgaca
     3001 ttgtatttca acagcgttaa ctgattcgcc accaccgaat gctgcaaaat ggcatcctgc
     3061 ggctgcggtt gatattgcgg gcgggcgtta tcgttgtaag acgggcgcag atcgttaaag
     3121 ttggtgcgca gcgtgacgcc aaacataaag gtgttgccac gttcatagct aaggttaacg
     3181 tcggcccaat cggtaacgcg ataaatcgca ccgacgttaa acttactttt ttgctccagc
     3241 ttcccggcaa aatcctgctg ataattattg ccttcatact ccagtttcag gcgcagcggt
     3301 tgccagggcg tctggtattc cacgccgcca aacagtgagg caggaccgtg gaacatctgg
     3361 ctaccgtcga tagatcccgc ctgtttgtag ctgttatcgc gatagcaata tttatcactg
     3421 gctgaacaga gcggattttt cacattaccg ctggtgccca gataacccca gcccaggccg
     3481 agcgtaaaat cgaacggccc ccaggctttg ctggcaacaa gatattccgc atcaaacagc
     3541 cccgtaccgc cgatatccct cgcaccaacc gccacttgcg gcagccagta actctcttcc
     3601 cacaaacgca gtttgagatc gaaggcttta tctttatacg tttgatcgcc agagaacgct
     3661 tcgacgctgc tgtactgccg ggtgcgcacg tcggtgtagc gcagcgttgt ttccagccac
     3721 gggaagagtt gcactgaagc tgagtaataa cggtactgat cgttatcgcg atagttcagg
     3781 ctcaactccc cttcccgcgc catgcgtgcg gtgggcgttt gtaataatcc tacgccaccg
     3841 aaatccgact gcgacgggcc aatgggcgca ggatatgttt cgccgtagca agccatgcta
     3901 atgcccagcg ccagtaagct aagcagatgt ctttttttca ttattggggt atccgctgcg
     3961 tcagagtctg aagaatgtcg gcgttaaggg catcaggcgt ctcactccag acggagtccg
     4021 cgaggccaac ataaataatg ctgccgggca tcggctctac gtgacgcttg ttccagtaag
     4081 ccaccggcgc tttttgcgtg cgtccgtccg ggtaaaccac ccacgcgtag ctgcgatccg
     4141 caccgctaag caggttctgc ccggagagat agctcgccac gtcgcgacct ggagtgaatg
     4201 gctgcttgcc aggacggctg ataagcccga acaacgtgac cgtggacggc ggtggtccga
     4261 cccacagcgt gtagttgccc tgcaacggtg ggttaccgcg ttcggcaacg cgcacgatat
     4321 cgggatcaag attgattttt tgcctgcccg tcactttcaa cgcctgaatt tgctggcgta
     4381 aggcgttaat ggcggcggca tcgtcggcgc tggagtctgc ggcctgttca gccagccgtg
     4441 tcagcaacgc ctgctgctga cgcaatgctg ccgccgttgc cagctcttcg ctaatcaccg
     4501 caccgggcca ccagttgttt gccagccgcg gttagcctac cagatcgatt aaatgctctg
     4561 cgcctgttag tgttttggcc tcactgctgc cattgctgaa caccttgacg gttcctgccg
     4621 cgaagaccga tgacgctccc acactcaaaa gcaacgcgac aaaagtttgt ttaatcattg
     4681 ttttgccgcc ttgatgagag tggttttcac cgggaaataa tccgcgccga gatactgttc
     4741 cgactggcga atttgccctt cgctgtcgat ccagtagcgg ttatgccagc gcgcctggtc
     4801 ggtggagact tcttcgtcca gcacgcgaac cagggtttca tcgctgccga ctttgacggt
     4861 atcggtgcca tcccatttga agactgagcg tgcggtggcg tagcgtacct gctggtactc
     4921 ggtccagccc atcgtgcgcg tccatgttgc accatcaaca atttgtgcgg gtttaatcag
     4981 cgggtcggcg gcaaggttat tcacttcaat caggttgtcg ccgccaagca aaatcttcac
     5041 cagacgacca tgttgtgtga caagagtggc ttgatcctga gtgacccatt tttgttgtcc
     5101 gtcttcagcg aaggccagca ccacaaacaa ttgcggcccg ccattaagct gcatgtactg
     5161 gctggcgtag ggcatatttt gaatatcatc gtccgtcagc tgtacgcctg gcgtgccgaa
     5221 cagactgtcc cacagtgaat tgcccagctc tttagtcgtg gctgaacagg cctgtaatag
     5281 caggcagata agaatgagtg caggtcgctt cacgactctt ctccagaggg gcagaataac
     5341 cacaccggag tgtggttatg gtaaatccct tcatacttca agccacagat gcaatgactc
     5401 aaattatttt ggggatacat actttattac tgggtactgg tggtcgtggt tgtggtggtc
     5461 ccggtattag aaccatcacc gccaccggtt gccgcgagcg cgacacccac cgccgagctt
     5521 acggtgctga cgctggtcgc ggaggaacta cccgccgaaa ccgacgttgc tgccgaccct
     5581 gccgcttcgc ccacctgtac aggtgcagcc cacgcagaag tcgccgcaag cgcagatatg
     5641 gcaaaaatgc catacagaac ttttttcata acaatttccc ttcattgaat gaatggagat
     5701 ttacccaaaa acatttcggg cgggatcgag tatacacaac taaagcatgc gaattacggc
     5761 gcggggaatt agcgatggcg ttttaggata attggaatga atatcaaata taagcttcaa
     5821 cttatattta aataacaata aaaatcataa acttaaaata aaaacaaaag taattaatct
     5881 gcgtattctc cgaaataaac aacgattaaa aatatatttt aggattaacc tcacggtatg
     5941 atttccgtta aatcacagac aaggggattt atctgataaa acaatgccga cttattgtcg
     6001 gcattgtttt taaggttatt taactcctca tactatgcat taatgtcgat attggcatca
     6061 ggctccggtt gccggatgcg gcgtaaacgc cttatccggc ctacatatcg gcatcaggca
     6121 cgcatgatga ttaaccgcgc cacgctttat agcggttaat cagaccattg gtcgagctat
     6181 cgtggctgct gatttctttg tcatctttca gctctggcag aatacggttc gccagttgtt
     6241 tacccaactc cacgccccac tggtcgaagg taaagatgtt caggatcacg ccctgagtaa
     6301 agattttgtg ctcatacagc gcaatcaacg cccccaggct gaacggagtg atttcgcgca
     6361 gcaggatgga gttggtcggg cggttacctt cgaacacttt gaacggcacc acgtagtcaa
     6421 gcgttgccgg atctttaccc tgatcgcgat attcctgctc aaccacttcg cgggatttac
     6481 caaacgccag cgcttcggtc tgggcgaaga agttagacag cagtttctgg tggtgatcag
     6541 agagcgggtt atgggtgata gccggggcga tgaaatcgca cggtaccatt ttggttccct
     6601 ggtggatcag ctggtagaac gcgtgctgac cgttagtgcc tggttcaccc cagataatcg
     6661 ggccagtctg gtaatccaca acgttaccgt tacggtcaac atacttaccg ttggactcca
     6721 tattgccctg ctggaagtac gccgcgaaac ggtgcatata ctggtcatac ggcagaatcg
     6781 cttcagtttc cgcaccaaag aaattgttgt accagatgcc aatcagcgcc agcaggacag
     6841 gcaggttttt ctcggcaggc gtggtggaga aatgcttgtc catcgcgtgt gcgccagaaa
     6901 gcagttcaac gaagttatca aagccgatgg agagaacaat cgacaggcca atcgctgacc
     6961 acaaagagta acggccgccg acccagtccc agaactcgaa catgttggca gtatcaatac
     7021 caaactcgcc aacggctttg gcattggtgg aaagcgccgc aaagtgtttt gcaacgtgtt
     7081 tttcatcacc tgccgctttc aggaaccagt cacgcgcgct atgggcgttg gtcatagttt
     7141 cctgagtggt gaaggtttta gatgctacca agaacagcgt ggtttccggg tttacttttt
     7201 tcagcacttc agcgatgtga gtcccatcga cgttagaaac aaagtgcatg ttcaggtgat
     7261 ttttgtacgg acgcagtgct tcggtcacca tgtacgggcc gaggtcagaa ccaccgatcc
     7321 cgatgttcac tacgtcagtg attgctttgc cggtataacc cttccactca ccggagataa
     7381 tcgcttccga gaaggttttc atcttctcca gcaccgcgtt gacttccggc attacgtctt
     7441 tgccatcaac cagaatcggg gtattgctac ggttacgcag cgctacgtgc agcacggcgc
     7501 ggttttcagt gcggttgatc ttctcgccag agaacatcga cttaatcgcg cccgccagat
     7561 cgcactcttt cgccagatcc tgtaatttcg ccagcgtctc ttcagtgatg cggtttttgg
     7621 agtaatccac cagcatctga tcgtcgaatg ttgcggagaa cttagaaaaa cgatcgccgt
     7681 ctttagcaaa aagatcggcg atcgtaacgt ctttcatttc atcgaagtgt ttctgtagtg
     7741 cctgccaggc agcggtctgc gttggattga tgtttttcat tagcaatact cttctgattt
     7801 tgagaattgt gactttggaa gattgtagcg ccagtcacag aaaaatgtga tggttttagt
     7861 gccgttagcg taatgttgag tgtaaaccct tagcgcagtg aagcatttat tagctgaact
     7921 actgaccgcc aggagtggat gaaaaatccg catgaccccg tcgttgacaa ccgccccgct
     7981 caccctttat ttataaatgt actacctgcg ctagcgcagg ccagaagagg cgcgttgccc
     8041 aagtaacggt gttggaggag ccagtcctgt gataacacct gagggggtgc atcgccgagg
     8101 tgattgaacg gctggccacg ttcatcatcg gctacagggg ctgaatcccc tgggttgtca
     8161 ccagaagcgt tcgcagtcgg gcgtttcgca agtggtggag cacttctggg tgaaaatagt
     8221 agcgaagtat cgctctgcgc ccacccgtct tccgctcttc ccttgtgcca aggctgaaaa
     8281 tggatcccct gacacgaggt agttatgtct gaaattgttg tctccaaatt tggcggtacc
     8341 agcgtagctg attttgacgc catgaaccgc agcgctgata ttgtgctttc tgatgccaac
     8401 gtgcgtttag tagtcctctc ggcttctgct ggtatcacta atctgctggt cgctttagcg
     8461 gaagggctgg aacctggcga gcgattcgaa aaactcgacg ctattcgcaa catccagttt
     8521 gccattctgg aacgtctgcg ttacccgaac gttatccgtg aagagattga acgtctgctg
     8581 gagaacatta ctgttctggc agaagcggcg gcgctggcaa cgtctccggc gctgacagat
     8641 gagctggtca gccacggcga gctgatgtcg accctgctgt ttgtcgaaat cctgcgcgaa
     8701 cgcgatgttc aggcacagtg gtttgatgta cgtaaagtga tgcgtaccaa cgaccgattt
     8761 ggtcgtgcag agccagatgt agccgcgctg gcggaactgg ccgcgctgca gctgctccca
     8821 cgcctcaatg acggcttagt gatcacccag ggatttatcg gtagcgaaaa taaaggtcgt
     8881 acaacgacgc ttggccgtgg aggcagcgat tatacggcag ccttgctggc ggaggcttta
     8941 cacgcatctc gtgttgatat ctggaccgac gtcccgggca tctacaccac cgatccacgc
     9001 gtagtttccg cagcaaaacg cattgatgaa atcgcgtttg ccgaagcggc agagatggca
     9061 acttttggtg caaaagtact gcatccggca acgttgctac ccgcagtacg cagcgatatc
     9121 ccggtctttg tcggctccag caaagaccca cgcgcaggtg gtacgctggt gtgcaataaa
     9181 actgaaaatc ctccgctgtt ccgcgcgctg gcgcttcgtc gcaatcagac tctgctcact
     9241 ttgcacagcc tgaatatgct gcattctcgc ggcttcctcg cggaagtttt cggcatcctc
     9301 gcgcggcata atatttcggt agacttaatc accacgtcag aagtgagcgt ggcattaacc
     9361 cttgatacca ccggttcaac ctccactggc gatacgttgc tgacgcaatc tctgctgatg
     9421 gagctttccg cactgtgccg ggtggaagta gaagaaggtc tggcgctggt cgcgttgatt
     9481 ggcaatgacc tgtcaaaagc ctgcggcgtt ggcaaagagg tattcggcgt actggaaccg
     9541 ttcaacattc gcatgatttg ttacggcgca tccagccata acctgtgctt cctggtgccc
     9601 ggcgaagatg ccgagcaggt ggtgcaaaaa ctgcatagta atttgtttga gtaaatactg
     9661 tatggcctgg aagctatatt tcgggccgta ttgattttct tgtcactatg cttatcaata
     9721 aacgagcctg tactctgtta accaacgtct ttatcgagaa taattgcctt taattttttt
     9781 atctgcatct ctaattaatt atcgaaagag ataaatagtt aagagaaggc aaaatgaata
     9841 ttatcagttc tgctcgcaaa cgaattcccg tacactgaac tctctggctc actgagggca
     9901 ccatcatggc actcccccgt attacccaaa aagagatgac tgaacgcgag cagcgtgaac
     9961 ttaaaacact gctggatcgg gcgcggattg cgcatggtcg cgtactgacc aactccgaaa
    10021 ccaacagcat taagaaagag tacatcgata aattaatggt cgagcgtgag gctgaagcga
    10081 aaaaagcccg ccaattgaag aaaaaacagg cttataaacc ggatcctgaa gcgtcattta
    10141 gctggtcagc aaatacgtcg acgcgcggca ggcgctaatg aacaatcaac gcctgagatt
    10201 ttcactcgtc tgtgtggaca caatcttccc ctcaccctaa ccctctcccc gaaggggcga
    10261 ggggactgtc cgagctcttt ttggacgttt tcatcagtct gaggcgttaa tcagcgtccc
    10321 ttctttttac gccccggcga ggtaaaacgc ttaccgttgg acgccgggcg accgcctttt
    10381 tccgccgttt tttccatctt aacgactgga cgtttgatgc ccgctgtttt cggtttggcc
    10441 ttcgctttag gttttgcctc ggaagaggaa ttttcgatga gcttaaagag gtcgattaac
    10501 tcatcgtcgg ttaaatcgcg ccactccccc agcggaatgc cgcttaagct gacgttcata
    10561 atgcgcgtac gttccagctt tttcacttca tagccgaaat gctcgcacat gcgccggatc
    10621 tgacggttca gcccctgcac cagggtaatg cggaagacaa acggcgcttc ttttttgact
    10681 ttgcactttt tcgtcaccgt cccgaggatc ggcacccccg cccccatacc acgaataaat
    10741 tcatcggtaa tcggtttatc gaccgtcacc agatactctt tctcatgatc gttacccgca
    10801 cggaggatct tattcaccag atcgccgtga ttggtgagga aaatcagccc ctgggagtct
    10861 ttatccaggc ggccaatcgg gaacacgcgt ttgctgtggt taacgaaatc gacaatgtta
    10921 tcgcgctcgc catcttcggt ggtgctgaca ataccgacgg gcttgttcag ggcgataagt
    10981 accaaatctt cggcttcccg aggctcaatc aactgaccgt ttactttcac aatgtcgccg
    11041 ggtttcacct gatcgccaat ggtggctcgc ttgccattaa ggaacacatt gccttgctcg
    11101 atatagcgat ccgcttcgcg gcgtgagcaa attccgcttt cgctgatgta tttatttaaa
    11161 cggactgatg agtcgggcag cataaattct cctgtaaaac gcggaatata ccgtacctct
    11221 tagcggggaa aaacagggtt atgcggcaac gtcgaaatta aatgtgatct gccacgcctt
    11281 ttatcacaaa agtgtctccg gaagtacgat gcaaatttgc ctggcaaaat aaggataatc
    11341 aacatattac gaatcgctgc acacctgtgc tgatgactac tacgcagaga aacaaatgtg
    11401 caagagaaag cgctatatct ccccatgcaa agagtgaaaa atcgctttga aaggccctca
    11461 tgatggggtt atatcagatc aagcggtgag aaagcgtatt tgcacaaatg tgcagaacca
    11521 ggaggcggca atggaaaaca gtgacgatat ccgtttgatt gtgaagattg cccaactcta
    11581 ttacgaacag gatatgacgc aggcgcaaat cgcgcgcgaa ctgggtattt accgcaccac
    11641 catcagccgc ttgcttaaac gaggccgcga tcagggaatt gtcaccatcg ccatcaacta
    11701 tgactacaac gaaaatctct ggctggagca gcaactgaag caaaagtttg gcctgaaaga
    11761 cgttgtggtg gtgtcgggaa atgatgagga tgaagagact caactggcga tgatggggtt
    11821 acacggcgcg caactgctgg atcgcttgct ggagcctggc gatattgtcg gtttttcctg
    11881 gggtcgcgcg gtgagcgcac tggttgaaaa cttgccgcag gcggggcaat cgcggcagtt
    11941 aatctgcgta ccaattattg gcggaccgtc cggtaaactc gaaagccgct atcatgtaaa
    12001 cacattaacc tacagcgcgg cagcgaagct gaaaggggaa tcgcatctcg cggattttcc
    12061 ggctctgctg gataacccat taattcgtaa tgggatcatg cagtctcagc actttaaaac
    12121 catctctgcc tactgggata atctggatgt cgccctggtg ggaattggct caccggccat
    12181 tcgcgacggc gctaactggc atgcgtttta tggtggtgaa gagagtgacg acctgaatgc
    12241 ccgccaggtt gctggcgata tttgctcgcg cttttttgat attcacggcg caatggttga
    12301 aacgaatatg agcgaaaaaa cactctctat cgaaatgaat aaattaaagc aggcacgata
    12361 ttccattggc attgccatga gtgaagaaaa atacagcgga attgttggtg cactgcgtgg
    12421 aaaatatatt aattgtctgg taacgaatag cagcacagct gaactattac tgaaataaaa
    12481 atcttcccga tgtttagcgt aataaaaatt acggcggggc cctattatct aaaatcagga
    12541 gtctgttatg caaacgtggt taaatttgca ggataaaatc attattgtca ccggcggcgc
    12601 atccggtatt ggtctggcga ttgtagagga attattagca caaggcgcaa acgtacagat
    12661 ggtagatatt cacggtggcg atggtcaata tgaagatcat aaaggctatc agttttggcc
    12721 gaccgatatt tccagcgcca aagaggtaaa tcatacggta gcggaaatta tccagcgttt
    12781 tggtcgcatc gacggtctgg tcaataacgc cggggtcaat ttcccgcgtc tgctggtcga
    12841 tgagaaagcg cctgccgggc agtatgaact caacgaagct gcattcgaaa aaatggtcaa
    12901 tatcaaccag aaaggcgttt ttctgatgtc gcaggcggtg gcgcgacaga tggtcaaaca
    12961 acatgatggc gtgattgtga atgtttcctc agaaagtgga ctggaaggct cagaaggcca
    13021 aagctgttac gccgctacca aagccgcgct taatagcttc acgcgatcct ggtcgaaaga
    13081 attgggtaaa cacggtatcc gtgtggtcgg tatcgcgccg gggattctgg aaaaaacagg
    13141 actgcgcacg ccggaatatg aagaagcgct ggtgtggacg cgcaatatca ccgtcgagca
    13201 gctgcgtgaa ggctatacca aaaacgccat tcctattggg cgcgccggaa gattagcaga
    13261 agtcgctgat tttgtttgtt atctgctgtc tgaacgcgcc agctatatca ccggagtaac
    13321 cactaacatt gcgggcggca aaacgcgcgg ctaaggaggc tttatggtca atgccatttt
    13381 ttgcgcccac ggcaaattag cttgcgccat gctggaatcg gttcagatgg tgtacggcga
    13441 cgccagggtc gaggcagttg aatttgtgcc cggcgagaac gccggagaca tcgtagcaaa
    13501 gctggaaaag ttagtaagca ttcacaatca agatgagtgg ctgattgccg tggatttaca
    13561 gtgcggcagc ccgtggaatg cggcagcgat gcttgcgatg cgcaatcctc gtctgcgggt
    13621 aatcagcggc ctttctctgc cgctggcgct cgaactggtt gataaccagg acagcatgaa
    13681 tgttgatgaa ctgtgtgaac acctgacgca aatcgcaaag caaacctgcg ttgtctggaa
    13741 acaactggca acggcagagg aggatttctg atgaacatta cgctcgcccg cattgatgac
    13801 cgcctgatcc acggtcaggt cactaccgtc tggtcgaaag tggctaacgc ccagcgcatt
    13861 attatctgca atgacgaagt ttataacgat gaagttcgcc ggacattatt gcgtcaggct
    13921 gcgccaccgg gaatgaaggt taacgtggtc aatattgaaa aagccgtcgc tgtttatcac
    13981 aacccgcaat atcaggacga aaccgttttt tatcttttca ctcgcccaca ggatgcctta
    14041 gcgatggttc gccaaggggt aaaaatagac accctaaata ttggcggcat ggcctggcgg
    14101 cccggtaaaa aacagttaac caaagcggtt tcattagatg atgatgatat taacgcattt
    14161 catgagttaa ataatcttgg cgtcatactg gatttacgcg tcgtagcgtc agatccctca
    14221 atcaatatta tcgacaaaat aaacgaacag ttaatcgcaa attaaataat agcgcttgtg
    14281 tacatatgct ttaacaggca gggatgacga cacttaaaag gtgaaaaatc atggaaataa
    14341 gtaccctaca aatcattgct atatttcttt tttcctgtat tgccggaatg ggcagcgtgc
    14401 tggatgaatt tcagactcat cgcccgttaa ttgcctgtac ggtgattggt ttaattctcg
    14461 gtgatttaaa aaccggaata atactcggtg gtacgctgga attgatagct ctcggctgga
    14521 tgaacgtcgg cgcggcgcaa tctccggatt ctgcactcgc cagcataatc tccgccattc
    14581 tggttatcgt tggtcagcaa agcatcgcca ccggaatcgc catcgcgttg cctgtggctg
    14641 cggcaggcca ggtgctgact gtgtttgccc gtaccatcac cgtagtgttc cagcacgcgg
    14701 cggataaagc agcggaagaa gcacggtttc gcactctcga tattctgcat gtctccgcgt
    14761 ttggcgtgca ggcgctgcgc gttgctattc cggcactgat tgtctcactg ttcgtcagcg
    14821 ccgatatggt gagcaatatg ctgagcgcga taccggaatt cgtgacgcgc ggtctgcaaa
    14881 ttgctggcgg ttttatcgtg gtggtcggtt acgccatggt gctacgtatg atgggcgtga
    14941 aatatttgat gcctttcttt ttcctcggtt tcctcgcagg tggctacctc gatctcagtc
    15001 tgctggcgtt cggtggcgtc ggcgtgatca tggccctggt ctacatccag ctaaatccac
    15061 agtggcgtaa agctgaacct caactccagg ccaccgcctc caccgccctt gaccaacttg
    15121 acgattaacg gagccatcat ggaacagaga aaaattacac gcagcgatct ggtgagcatg
    15181 tttctgcgct ccaacctgca acaggcgtcc tttaactttg aacgtattca cgggctgggt
    15241 ttttgctacg acatgatccc cgccatcaaa cgactttacc cattaaaaga ggatcaggtt
    15301 gcggcgctca ggcgacacct ggtgttcttc aataccacgc cagccgtatg tggcccggtc
    15361 atcggcgtca ctgccgccat ggaagaggcg cgggccaacg gcgcggaaat tgatgacggt
    15421 accattaacg gcatcaaagt cggtctgatg ggaccattgg caggagttgg cgatccactg
    15481 gtctggggaa cgctgcgccc gattaccacc gcgctcggcg catctctggc actttcgggc
    15541 aacattctcg gcccgctgct gttcttcttt attttcaatg cggtgcgtct ggcgatgaag
    15601 tggtatggcc tacagctcgg ctttcgcaaa ggggtgaata tcgtcagcga tatgggcggg
    15661 aatgtgctgc aaaaactcac cgaaggcgcg tcgattctcg gactgtttgt gatgggcgtg
    15721 ctggtcacca aatggacgtc aatcaacgta ccgttggtgg tttcacaaac gcatgccgcc
    15781 gatggctcca ccgtcaccat gaccgtgcag aacattctcg accaactttg ccctggtttg
    15841 ctggcgctcg gtctgacgct gcttatggtt cgtctgctca acaaaaaaat taacccggta
    15901 tggctgattt tcgccctgtt tggcttaggg attatcggta atgcgctggg cttcctgtcc
    15961 agattcttcg ccccggcatg actgccgggg ccatcgctca acatgaggtg gtttatgaaa
    16021 acaacagctc tgcgtcttta tggtaaacgt gatttacgcc tggaaacctt tgaccttcct
    16081 gaaatgcagg aggatgaaat cctcgcgacg gtggtcactg acagcctgtg cctctcttcc
    16141 tggaaagagg ccaatctggg tgaaaaccat aaaaaagtac ccgacgatgt ggcgaccaac
    16201 cccatcatca tcggccacga gttttgcggc gatattctgg ccgtgggtaa aaagtggcag
    16261 cacaaattcc agccgggtca gcgttatgtg attcaggcca acctgcaact ccccgaccgc
    16321 ccggactgcc ccggctactc cttcccgtgg gtgggcggcg aagccacgca tgtagttatt
    16381 cccaacgagg tcatggaaca agattgcctg ctggcatacg acggcgaaac ctattttgaa
    16441 ggctcactgg ttgaaccgct ttcctgcgtg attggcgcgt tcaacgccaa ctatcatctt
    16501 caggaaggta gttataacca cacgatgggg attcgcccgc aagggcgcat gctgatcctc
    16561 ggcggcaccg gaccaatggg actgttggcg attgattatg cgctacatgg acccgttaac
    16621 ccgtcgcagc tcgtcattac cgataccgac aacgataaat tgagttatgc gcgcaagcac
    16681 tatccatcag aaccgcaaac actgattcat tatctcaatg ccgccgatgc agcatttgat
    16741 acgctaatgg cgctgagtgg cggtcacggc ttcgatgata ttttcgtctt tgtgcctaat
    16801 gaaggactgg tgactctcgc ctcttccttg ctggcgacag atggttgcct gaatttcttc
    16861 gccggaccgc aggataaaca tttcagcgcg ccaattaatt tctacgatgt gcattatgca
    16921 tttacccact acgtgggcac gtcaggcggc aataccgacg acatgcgcgc ggcggtcaaa
    16981 ctgattgaag agaaaaaagt gcaggccgca aaagtggtaa cacatattct tgggctgaat
    17041 gccgcgggcg aaaccacgct tgaattgcct gccgtcggcg gcggcaaaaa gctggtgtat
    17101 accgggaaat acctgccgct gacgtcactc acgcagattc aggatcaagc actggcggcg
    17161 attctggcgc gtcatcaggg gatctggtcc ggtgaggcgg agcaatatct gctcactcat
    17221 gcagaggcaa tttcccatga ttaatcgcgc tacttaactc tgcatgtcgc tggctggtcg
    17281 ccgcggcaac ttcgcgacct gatgtgcggc tgattgctga agcggcccaa tgtgcacgag
    17341 aaggataaaa aaacatcagc gccttaaggg gcgctcaaat tggtggcaaa gtacacattg
    17401 tttatgccgg atgcggaata aagccttatt cggcctacat aatctcgaaa attcaatata
    17461 ttgcagttat ctggtaggcc tggtaagcgt agcgcatcag gcaatgctgt gtttgtcatc
    17521 agtctcagct cccggtgcaa tacgtgacat cgtgagccat gtcagtaagt ggttaaattc
    17581 gcagtggtag catgccttcc gtgatttctt actaaccgga gaagtaatgg aactgctttt
    17641 attgagtaac tcgacgctgc cgggtaaagc ctggctggaa catgcactgc cgctaattgc
    17701 tgaacagttg cagggtcgcc gctcagcggt gtttatccct ttcgctggcg taacgcagac
    17761 ctgggatgat tacacagcga aaacggctgc ggttctcgct ccgctgggtg tttctgtcac
    17821 cggtattcat agcgttgtcg atcccgttgc cgcgattgaa aatgctgaga tcgtgattgt
    17881 cggcggcggg aatactttcc agttgctgaa acagtgccgc gagcgcgggc tgctggcacc
    17941 aattactgac gtggttaaac gtggtgcgct gtatattggc tggagcgcag gcgctaacct
    18001 tgcttgccca accattcgta ccaccaacga tatgccgatt gtcgatccgc aaggtttcga
    18061 tgcgctaaat ctgttcccgt tgcaaatcaa cccgcacttc accaacgcgc tgccggaagg
    18121 ccataaaggt gaaacccgtg agcagcgtat tcgcgaactg ctggtcgtcg cgccagaact
    18181 gacgattatt ggtctaccgg aaggtaactg gatcacagtg agtaaaggtc acgctacgct
    18241 gggtggcccg aacaccacct atgtgtttaa ggccggtgaa gaagcggttc cgctggaagc
    18301 tggtcaccgt ttttaagtga attgccggat gcatgatccg gcatcttgtt catagtgcct
    18361 gatgcgacgc ttgacgcgtc ttatcaggcc tacaggattc acaatattaa tactcgtccc
    18421 gtccttcatc ttcatccgac tgttccagca cactgtaagc caccgaacaa aacagcgagt
    18481 tcaggcgctg catatctccc agtaagccta aatgtagcga actggtttca atgctctgca
    18541 cgttttgctg atgcaggcga tcgacgtggg cgtgggaata gcggcgatta agaatgcgaa
    18601 agcgatgctt actacggcgc aaacgacgag cgctggtgac atcgccagag aagaacaccg
    18661 acattgccag ctttaaatta ctgagcaatt gctcatagag cgcatccagt tccttcaacc
    18721 catcaagcga aaatgcccgc cgtgctgcca gtgatttgtc agcaatttcg ctgcccatgc
    18781 gctcgacgat atcggaggcc tgttcaaggt tgagcgacat ttcaataatc tccgcccagc
    18841 ggcgcgactc ttcctccgcc agctcttctt ttggcatccg cgccagatac agcttaatgg
    18901 cggtgtagag aacgttgata tcatctgcca gcttacgcag ctctttctcc tgccgtggct
    18961 caccgtgcat cactttattc aacccttcca tcatctgttc catggcgtcg ccaatgcgca
    19021 gggtttcgcg cgcggcgttc gccagagcaa gcgtgggcgt atccagcgcg ctgacatcca
    19081 gatgtttagg ccgtagctgg gtatccagtt ccggttcatc gcgaataatc gttttgcaaa
    19141 accgtgccat cgggtcaaca aatggcagca tgaccaggca acgtacaagg ttgtagaaga
    19201 cgtggaaata gatcaccagt tccgcttttg gcaatgacag cttccccatt gtctctgcca
    19261 gcaaatggac aaacggcagg ataatcaggc tacccaccag cttaaacagc agactaccca
    19321 gcgcgacacg gcgggctgcg gcattggcgg cactgttgtt gagcatcgcc agcaggccgg
    19381 aaccgaggtt agcaccaatc accagacaga gcgccacggg gaaggagata atgcctgcgg
    19441 cggtcagagc cgcggtcagc agtacagcag caaggctgga gtagctgata atggcgaaca
    19501 tcgcgccaat cagcgcatcc agcagaatat cgccggtcag cgaggcaaag atcacctgaa
    19561 cgccgtttgc ctgggtgatc ggcgttacgg cctgcacaat caactccagc gccagcaaaa
    19621 tcagcccaag accaataccg acgcggccca gttgcccggc gcgtgactgt ttgcgtccga
    19681 ggaaaaaaat cacgccgata aaaataagta acggtgacag ccaggataag tcgaaggtga
    19741 gaatacgcgc cattagcgcc gtcccgacat ctgcccccag cacaatgacc agagccggtg
    19801 cgagggctac cagatcctga gcgacgaacg aggtcaccag catggtggtg gcattactgc
    19861 tctgtaccag tgcggtaacg ccgatccccg cgcaaaaggc gagcggcttt ttttcgacgc
    19921 tccggctaag gacagtacgc aaacgcgcgc cgaagacgcg cattacgccg gttcgaacaa
    19981 tatgagtccc ccagaccagc agggcgacgg cagaaagcag gtgaagcagc gttaacacga
    20041 gttcaggttc tccttatcgt tatatgttcc tgaagcaatt gaatgaccaa aggaccggaa
    20101 acacgctgac tggcatcttt actgtgcctt ttgacattcg tttttccggc taagattatt
    20161 ccagcctgat tccagtataa gtgtttcata ttaataaaga gacagggcac tcattgagcg
    20221 ccctgtttgt tgtaaggaaa agtgacagat ttgtgaatca gtccgcgtca taccccagat
    20281 tcggtgccag ccagcgctca acatctgaga cgctcatacc tttacggcgg gcatagtctt
    20341 caacctgatc gcgctgaatt tgcgccacgg cgtagtactt gctgtccggg tggctgaaat
    20401 accaacccga aaccgatgca ccgggccaca tggcgaaaga ttctgtgagt ttcatgccgg
    20461 tatgtttttc cacttccagc agctcccaga tggtggcttt ttccgtatgt tccgggcagg
    20521 ccgggtagcc cggtgccgga cggatgccct ggtagttttc gcggatcagt tcttcgttgc
    20581 tgaggttctc gttcggcgca tagccccagt agactttacg cacacgctca tggagatact
    20641 ccgcaaaggc ttcggctaaa cggtcggcaa gcgctttcac catgattttg ttgtaatcat
    20701 cgtgctgcgc ttcaaaggca tcagccagtg cgtcctcttc cagcccgcca gtcacggcaa
    20761 atgcgccgat gtaatctgct ttaccagaaa gcttcggcgc aacaaagtca gcgagacagt
    20821 agttagcgaa tcccgttttt tcggtctgtt gacgcagatg gtggctgaca ttgatcacat
    20881 gggtgcgcgt ttcgtcacgg tagatttcaa tgtcatcgcc cacacggttt gccgggaaca
    20941 ggcccaccac gccacgcgga ttcagcgttt tctcggcgct taatttatcc agcatgtcgt
    21001 tggcgtcttt aaacagccgc tgcgcctcaa cgcccaccac ttcatcttcc agaatgcgcg
    21061 gatacttccc ggccagcgac caggtcataa agaacggtgt ccagtcgatg caattacgca
    21121 gagtttcgat gctggcttca acttcctgca cgccgagacg gtgcgccacc ggcggcgtgt
    21181 aagcctgcca gtcaaaagcg aagtcgttat cgcgcgccgc ttccagcgtg accggtggtg
    21241 tgcgcggttt cttgcgcccg tgctgaatac gtacggtttc gtactccttg cgggtacgag
    21301 cgacaaaatc atcgcgctga gtatcggaaa gcagcgccgc caccacacca acggtgcgcg
    21361 aggcattctg cacatacacc gtcgggccgc tgtagttctg ctcaattttc accgccgtgt
    21421 gcgcttttga ggtggtcgcg ccaccgatca gtaacggaat ggtgaagccc tgacgctcca
    21481 tctctttcgc cacgttaacc atctcgtcca gcgacggcgt gataagcccc gaaaggccaa
    21541 tcaaatcagc attcacttct ttagcagtac ggagaatttt ttccgcaggc accatcacgc
    21601 cgagatcgac aatttcgtag ttgttacatt gcagcaccac gccaacgata tttttaccga
    21661 tatcgtggac gtcgcccttc acggtggcga tcaccatctt gccgttggtt ttgccctgct
    21721 ctttgctggc ttcaataaac ggttcgagat acgccaccgc ctgtttcatg acgcgcgccg
    21781 atttgaccac ctgtggcagg aacattttgc cttcgccaaa cagatcgccg accacgttca
    21841 tgccgtccat caacgggcct tcaatcactt caatcgggcg cgtagcctgc tggcgggctt
    21901 cttcggtatc ctgctcgata aactcggtaa tgcctttgac cagcgagtat tccagacgtt
    21961 tattcacttc ccacgagcgc cactccgcct gctgggcgtt atcggtgtcg tcggttttgc
    22021 tgccgcgata tttctcggca agctccagta aacgctcagt gccatcgtca cgacgattaa
    22081 gaatcacatc ttccaccgcg tcgcgcagtt cagcgggtag gtcgtcgtaa atcgccagtt
    22141 gccccgcgtt gacgatcccc atatccatgc cattgcgaat agcgtagtag aggaacactg
    22201 cgtgaatggc ttcgcgcacc ggatcgttgc cacggaatga gaaagaaacg ttagatacgc
    22261 cgccggaaat cagcgcgtgc ggcagttcgc gtttgatgtc ttcacacgcg ccgataaagt
    22321 cctgcgcgta gttgttgtgc tcttcaatac cggtggcgac cgcgaagatg ttcgggtcga
    22381 agatgatatc ttctggcggg aagccaacct cttcggtgag gattttgtac gcccgacggc
    22441 aaatctcgat tttccgtgcg cgagtatcgg cctgtccctg ttcatcaaag gccatcacca
    22501 ccactgccgc accgtagcga cgcaacaatt tcgcgtgatg gataaaggcg tcgacgccct
    22561 ctttcatcga gattgagtta acaatgcctt tgccctgaat acacttcagc cctttttcga
    22621 taacgtccca ttttgaggag tcgatcataa tcggcacgcg agcgatatcc ggttcaccgg
    22681 caatcagatt gagaaaacgc accatcgccg cttcggcatc gagcatccct tcatccatgt
    22741 tgatatcgat aatctgcgcg ccgttttcca cctgctgacg cgccacatcc tgcgcctcgc
    22801 tgtatttctc ttctttgatc aggcgcttga acttagcaga gccggtgacg ttggtgcgtt
    22861 cacccacgtt cacaaacagg ctatcgtcgc caatgttcag cggctccagg ccagacaaac
    22921 ggcaggctac gggaatttcc ggcagtttgc gcggcgctaa tccttctact gcacgactca
    22981 tcgctgcaat atgttgcggc gtggtcccgc agcaaccacc gacgatattg agaaagcccg
    23041 cttgcgccca ttcacgtatc tgttttgcca tcgtgtcggc gtcgagatcg tattcaccaa
    23101 aggcgttagg cagcccggcg ttcgggtggg cggtgacgta gcattccgca atccgtgata
    23161 gttcctgcac gtactggcgc agttcatcgg gccccagcgc acagttcagg ccaaaggtta
    23221 gcgcttcggc gtggcgcaat gagttgtaaa atgcttcggt ggtctgcccg gagagcgtgc
    23281 gcccggaggc gtcggtgatg gtgccggaga tcataatcgg cagctcaacg cccagcgctt
    23341 caaactccgt tttcaccgca aaaaccgccg ctttggcgtt aagggtgtcg aaaacggttt
    23401 caatcaggat cagatccgca ccaccttcca ccagcgcttt ggtggattcg caataggccg
    23461 ccaccagctg gtcaaaagtg atgttgcgga atgccggatc gttgacgtcc ggagaaatag
    23521 acgccgtgcg gttggttggg ccgagaacac cggcaacgta gcgcggtttc tccggcgtgc
    23581 gcgcggtcca ctcgtcagca caggcgcgcg ccagtttcgc cgccgcaaag ttgatttccg
    23641 ccgacaggga ttccatctgg taatccgcca tcgcaatggt cgtggagttg aaggtgttgg
    23701 tttcgatgat atccgcgccc gcttcaaagt aggcgttgtg gatagcggcg atcacttccg
    23761 gtttgctgag caccagcagg tcgttgttgc ctttgagatc gcatggccag tcggcaaagc
    23821 gttcaccacg aaaatcggct tcgttcagtc gataactctg gatcatggtg cccataccgc
    23881 cgtccagcac cagaatacgt tcatttaact gcgcacgcag ttgttccact ttgctgctca
    23941 cacttgctcc cgacacgctc aacccagatt taataaaaat tcaacaaacc atactggcat
    24001 aaacgcatct gtggtaaaag cgaccaccac gcaacatgag atttgttcaa cattaactca
    24061 tcggatcagt tcagcaacta ttgcattagc taacaataaa aatgaaaatg attcccacga
    24121 tgcagaaaaa ggagactgtc atggtcgcac ccattcccgc gaaacgcggc agaaaacccg
    24181 ccgttgccac cgcaccagcg actggacagg ttcagtcttt aacgcgtggc ctgaaattac
    24241 tggagtggat tgccgaatcc aatggcagtg tggcactcac ggaactggcg caacaagccg
    24301 ggttacccaa ttccacgacc caccgcctgc taaccacaat gcaacagcag ggtttcgtgc
    24361 gtcaggttgg cgaactggga cactgggcaa tcggcgcaca tgcctttatg gtcggcagca
    24421 gctttctcca gagtcgtaat ttgttagcaa ttgttcaccc tatcctgcgc aatctaatgg
    24481 aagagtctgg cgaaacggtc aatatggagg tgcttgatca aagcgatcac gaagcgatta
    24541 ttatcgacca ggtacagtgt acgcatctga tgcgaatgtc cgcgcctatc ggcggtaaat
    24601 tgccgatgca cgcttccggt gcaggtaaag cctttttagc ccaactgagc gaagaacagg
    24661 tgacgaagct gctgcaccgc aaagggttac atgcctatac ccacgcaacg ctggtgtctc
    24721 ctgtgcattt aaaagaagat ctcgcccaaa cgcgcaaacg gggttattca tttgacgatg
    24781 aggaacatgc gctggggcta cgttgccttg cagcgtgtat tttcgatgag caccgtgaac
    24841 cgtttgccgc aatttctatt tccggaccga tttcacgtat taccgatgac cgcgtgaccg
    24901 agtttggcgc aatggtgatt aaagcggcga aggaagtgac actggcgtac ggtggaatgc
    24961 gctgactttt tctggcgggc agaggccata ttctgcccat cat
//
LOCUS       DADMJB010000046        24987 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.046, whole genome shotgun sequence.
ACCESSION   DADMJB010000046 DADMJB010000000
VERSION     DADMJB010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24987)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24987)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24987
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.046"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(111..449)
                     /locus_tag="JN078_001689"
                     /pseudo
     CDS             complement(111..449)
                     /locus_tag="JN078_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308538.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(565..1116)
                     /gene="maa"
                     /locus_tag="JN078_001690"
     CDS             complement(565..1116)
                     /gene="maa"
                     /locus_tag="JN078_001690"
                     /EC_number="2.3.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose O-acetyltransferase"
                     /protein_id="HAY9040930.1"
                     /translation="MSTEKEKMIAGELYRSADETLSRDRLRARQLIHRYNHSLAEEHT
                     LRQQILADLFGQVTEAYIEPTFRCDYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCML
                     APGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGA
                     VVTKGVPDNVVVGGNPARIIKKL"
     gene            complement(1288..1506)
                     /gene="hha"
                     /locus_tag="JN078_001691"
     CDS             complement(1288..1506)
                     /gene="hha"
                     /locus_tag="JN078_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin expression modulator Hha"
                     /protein_id="HAY9040931.1"
                     /translation="MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFY
                     SAADHRLAELTMNKLYDKIPSSVWKFIR"
     gene            complement(1532..1906)
                     /gene="tomB"
                     /locus_tag="JN078_001692"
     CDS             complement(1532..1906)
                     /gene="tomB"
                     /locus_tag="JN078_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001741190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hha toxicity modulator TomB"
                     /protein_id="HAY9040932.1"
                     /translation="MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNYGWVNDPTSAI
                     NLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYLDDTFMLFSSYGINMQDLQKWRK
                     SGNRLFRCFVNATKENPASLSC"
     gene            complement(2452..5601)
                     /locus_tag="JN078_001693"
     CDS             complement(2452..5601)
                     /locus_tag="JN078_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit"
                     /protein_id="HAY9040933.1"
                     /translation="MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVT
                     ISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADI
                     AQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAA
                     NMKDAISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQ
                     LGGTPPVKGQQLNASIIAQTRLTSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYD
                     IIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVK
                     ISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINT
                     LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLS
                     AVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEG
                     KKGFFGWFNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPD
                     EDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNT
                     GIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDF
                     ELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNGLEDTPQFKIDIDQEKAQALG
                     VSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDWYVRAADGQM
                     VPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASKLPTGVG
                     YDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALL
                     AATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRL
                     RPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVR
                     RRFSRKNEDIEHSHTVDHH"
     gene            complement(5624..6817)
                     /gene="acrA"
                     /locus_tag="JN078_001694"
     CDS             complement(5624..6817)
                     /gene="acrA"
                     /locus_tag="JN078_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit AcrA"
                     /protein_id="HAY9040934.1"
                     /translation="MNKNRGFTPLAVVLMLSGSLALTGCDNKQAQQGGQQMPAVGVVT
                     VKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQ
                     ATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAA
                     KAAVETARINLAYTKVTAPISGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQ
                     SSNDFLRLKQELANGTLKQENGKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITL
                     RAIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQQGVTRTPRGDATVLVVGADDKVET
                     RPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKAQEVTADNNQQAASGAQP
                     EQSKS"
     gene            6959..7606
                     /gene="acrR"
                     /locus_tag="JN078_001695"
     CDS             6959..7606
                     /gene="acrR"
                     /locus_tag="JN078_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter transcriptional
                     repressor AcrR"
                     /protein_id="HAY9040935.1"
                     /translation="MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVT
                     RGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVT
                     EERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMT
                     RRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE"
     gene            7734..11096
                     /gene="mscK"
                     /locus_tag="JN078_001696"
     CDS             7734..11096
                     /gene="mscK"
                     /locus_tag="JN078_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel MscK"
                     /protein_id="HAY9040936.1"
                     /translation="MTMFQYYKRSRHFVFSAFIAFVFVLLCQNTAFARASSNGDLPTK
                     ADLQAQLDSLNKQKDLSAQDKLELQDLTDTLATLDKIDRIKEETVQLRQKVAEAPEKM
                     RQATAALTALSDVDNDEETRKILSTLSLRQLETRVAQALDDLQNAQNDLASYNSQLVS
                     LQTQPERVQNAMYNASQQLQQIRSRLDGTDVGETALRPSQKVLMQAQQALLNAEIDQQ
                     RKSLEGNTVLQDTLQKQRDYVTANSARLEHQLQLLQEAVNSKRLTLTEKTAQEAVSPD
                     EAARIQANPLVKQELEINQQLSQRLITATENGNQLMQQNIKVKNWLERALQSERNIKE
                     QIAVLKGSLLLSRILYQQQQTLPSADELENMTNRIADLRLEQFEVNQQRDALFQSDAF
                     VNKLEEGHTNEVNSEVHDALLQVVDMRRELLDQLNKQLGNQLMMAINLQINQQQLMSV
                     SKNLKSILTQQIFWVNSNRPMDWDWIKAFPQSLKDEFKSMKITVNWEKAWPAVFIAFL
                     AGLPLLLIVGLIHWRLGWLKAYQQKLASAVGSLRNDSQLNTPKAILIDLIRALPVCLI
                     ILAVGLILLTMQLNISELLWSFSKKLAIFWLVFGLCWKVLEKNGVAVRHFGMPEQQTS
                     HWRRQIVRISLALLPIHFWSVVAELSPLHLMDDVLGQAMIFFNLLLIAFLVWPMCRES
                     WRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSGRWIETVYLVIIWNLLYQ
                     TVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIALEQVNQQTLRITMLLM
                     FALFGVMFWAIWSDLITVFSYIDSITLWHYNGTEAGAAVVKNVTMGSLLFAIIASMVA
                     WALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFGSLGVSWDKLQW
                     LAAALSVGLGFGLQEIFGNFVSGLIILFERPVRIGDTVTIGSFSGTVSKIRIRATTIT
                     DFDRKEVIIPNKAFVTERLINWSLTDTTTRLVIRLGVAYGSDLEKVRKVLLKAATEHP
                     RVMHEPMPEVFFTAFGASTLDHELRLYVRELRDRSRTVDELNRTIDQLCRENDINIAF
                     NQLEVHLHNEKGDEVTEVKRDYKGDDPTPAVG"
     gene            complement(11308..11469)
                     /gene="rsmS"
                     /locus_tag="JN078_001697"
     CDS             complement(11308..11469)
                     /gene="rsmS"
                     /locus_tag="JN078_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pleiotropic regulatory protein RsmS"
                     /protein_id="HAY9040937.1"
                     /translation="MSLENAPDDVKLAVDLIVLLEENQIPARTVLRALDIVKRDYEKK
                     LTRDDEAEK"
     gene            complement(11483..12010)
                     /gene="priC"
                     /locus_tag="JN078_001698"
     CDS             complement(11483..12010)
                     /gene="priC"
                     /locus_tag="JN078_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N''"
                     /protein_id="HAY9040938.1"
                     /translation="MKTALLLEKLEGQLATLRQRCAPVAQFATLSARFDRHLFQTRTT
                     TLQACLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAP
                     PKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCR
                     HALEKIENRLARLTR"
     gene            12080..12457
                     /locus_tag="JN078_001699"
     CDS             12080..12457
                     /locus_tag="JN078_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF454 family protein"
                     /protein_id="HAY9040939.1"
                     /translation="MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSP
                     RFHAWLLYRSWFGSYLRFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLL
                     VILACLLFYMWRIPVIDEKQEKH"
     gene            12610..13161
                     /gene="apt"
                     /locus_tag="JN078_001700"
     CDS             12610..13161
                     /gene="apt"
                     /locus_tag="JN078_001700"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HAY9040940.1"
                     /translation="MTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALS
                     IDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDL
                     EYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFD
                     LGGEQRLEKQGITSYSLVPFPGH"
     gene            13290..15161
                     /gene="dnaX"
                     /locus_tag="JN078_001701"
     CDS             13290..15161
                     /gene="dnaX"
                     /locus_tag="JN078_001701"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HAY9040941.1"
                     /translation="MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFS
                     GTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVE
                     DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ
                     KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL
                     SLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGI
                     EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI
                     GRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQ
                     PQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVPSALEKAP
                     AKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAARVS
                     QLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSTLKGSTVEL
                     TIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI"
     gene            15214..15543
                     /locus_tag="JN078_001702"
     CDS             15214..15543
                     /locus_tag="JN078_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001364632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HAY9040942.1"
                     /translation="MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKV
                     TINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLP
                     PGFKMPF"
     gene            15543..16148
                     /gene="recR"
                     /locus_tag="JN078_001703"
     CDS             15543..16148
                     /gene="recR"
                     /locus_tag="JN078_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HAY9040943.1"
                     /translation="MQTSPLLTQLMEALRCLSGVGPKSAQRMAFTLLQRDRSGGMRLA
                     QALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQENGQICVVESPADIYAIEQTGQFS
                     GRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
                     CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF"
     gene            16258..18132
                     /gene="htpG"
                     /locus_tag="JN078_001704"
     CDS             16258..18132
                     /gene="htpG"
                     /locus_tag="JN078_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003903109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HAY9040944.1"
                     /translation="MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAAD
                     KLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGT
                     KSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG
                     EYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDG
                     ETVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTS
                     LLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNV
                     SREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFAN
                     QEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELL
                     RKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKAL
                     TPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQKVPEVKY
                     IFELNPDHVLVKRAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLVS
                     "
     gene            18313..18957
                     /gene="adk"
                     /locus_tag="JN078_001705"
     CDS             18313..18957
                     /gene="adk"
                     /locus_tag="JN078_001705"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HAY9040945.1"
                     /translation="MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSE
                     LGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIN
                     VDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQ
                     EETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG"
     gene            19089..20051
                     /gene="hemH"
                     /locus_tag="JN078_001706"
     CDS             19089..20051
                     /gene="hemH"
                     /locus_tag="JN078_001706"
                     /EC_number="4.99.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HAY9040946.1"
                     /translation="MRQTKTGILLANLGTPDAPTPEAVKRYLKQFLSDRRVVDTSRLL
                     WWPLLRGVILPLRSPRVAKLYASVWMEGGSPLMVYSRQQQQALAQRLPETPVALGMSY
                     GSPSLESAVDELLAEHVDHIVVLPLYPQFSCSTVGAVWDELARILARKRSIPGISFIR
                     DYADNHDYINALANSVRASFAKHGEPDLLLLSYHGIPQRYADEGDDYPQRCRTTTCEL
                     ASALGMAPEKVMMTFQSRFGREPWLMPYTDETLKMLGEKGVGHIQVMCPGFAADCLET
                     LEEIAEQNREVFLGAGGKKYEYIPALNATPEYIEMMANLVAAYR"
     gene            complement(20048..21007)
                     /gene="aes"
                     /locus_tag="JN078_001707"
     CDS             complement(20048..21007)
                     /gene="aes"
                     /locus_tag="JN078_001707"
                     /EC_number="3.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl esterase"
                     /protein_id="HAY9040947.1"
                     /translation="MKPENKLPVLDLISAEMKTVVNTLQPDLPSWPATGTIAEQRQYY
                     TLERRFWNAGAPEMATRAYMVPTKYGQVETRLFCPQPDSPATLFYLHGGGFILGNLDT
                     HDRIMRLLASYSQCTVIGIDYPLSPEARFPQAIEEIVAACCYFHQQAEDYQINMSRIG
                     FAGDSAGAMLALASALWLRDKQIDCGKIVGVLLWYGLYGLRDSVTRRLLGGVWDGLTQ
                     QDLQMYEEAYLSNDADRESPYYCLFNNDLTREVPPCFIAGAEFDPLLDDSRLLYQTLA
                     AHQQPCEFKLYPGTLHAFLHYSRMMKTADEALRDGAQFFTAQL"
     gene            21159..22463
                     /locus_tag="JN078_001708"
     CDS             21159..22463
                     /locus_tag="JN078_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inosine/guanosine kinase"
                     /protein_id="HAY9040948.1"
                     /translation="MKFPGKRKSKHYFPVNARDPLLQQFQPENETSAAWVVGIDQTLV
                     DIEAKVDDEFIERYGLSAGHSLVIEDDVAEALYQELKQKNLITHQFAGGTIGNTMHNY
                     SVLADDRSVLLGVMCSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLIGESG
                     ERTFAISPGHMNQLRAESIPEDVIAGASALVLTSYLVRCKPGEPMPEATMKAIEYAKK
                     YNVPVVLTLGTKFVIAENPQWWQQFLKDHVSILAMNEDEAEALTGESDPLLASDKALD
                     WVDLVLCTAGPIGLYMAGFTEDEAKRKTQHPLLPGAIAEFNQYEFSRAMRHKDCQNPL
                     RVYSHIAPYMGGPEKIMNTNGAGDGALAALLHDITANSYHRSNVPNSSKHKFTWLTYS
                     SLAQVCKYANRVSYQVLNQHSPRLTRGLPEREDSLEESYWDR"
     gene            complement(22596..24272)
                     /locus_tag="JN078_001709"
     CDS             complement(22596..24272)
                     /locus_tag="JN078_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Kef family K(+) transporter"
                     /protein_id="HAY9040949.1"
                     /translation="MHHATPLITTIVGGLVLAFILGMLANKLRISPLVGYLLAGVLAG
                     PFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKAIAIPGAIAQIAVATLL
                     GMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLV
                     MVLTLVLLPAVAGMMEQGDVGFATLAVDMGITIGKVIAFIAIMMLVGRRLVPWIMARS
                     AATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLP
                     LRDAFAVLFFVSVGMLFDPLILIQQPLAVLATLAIILFGKSLAAFFLVRLFGHSQRTA
                     LTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFALLEKYLA
                     KTETLEEQTLEEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR
                     TRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPD
                     IEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLETPPAGEVVTG"
     gene            complement(24510..>24987)
                     /locus_tag="JN078_001710"
     CDS             complement(24510..>24987)
                     /locus_tag="JN078_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9040950.1"
                     /translation="YYTFYLMQKFGLSIQNAQLHLFAFLFAVAAGTVIGGPVGDKIGR
                     KYVIWGSILGVAPFTLILPYASLHWTGVLTVIIGFILASAFSAILVYAQELLPGRIGM
                     VSGLFFGFAFGMGGLGAAVLGLIADHTSIELVYKICAFLPLLGMLTIFLPDNRHKD"
BASE COUNT         6247 a         6509 c         6414 g         5817 t
ORIGIN      
        1 gtcactctcg tctggggaat atctccccgg cagccttcag ggaaaaatat catcagatgg
       61 ctgcttaaaa aagaacaaat ggtagtgtcc gctattgcca gtacacctca cagcgcggca
      121 ggtacaaagc gcgtgttgta ccattcgccg ttatagcaaa cgcggaaatc cagcacgtcg
      181 atatcttcat agcggtagcg tgggtagaca tcgaaaaaga agaaaccatt aagcaggata
      241 aataatacaa ccagtagcca gacagagcct gacagcgttt cggactgcaa catcaccgcc
      301 agggtggcaa aaaaagcaac gtacataccg ataaacagcc ccggatgttt acggataaaa
      361 ctgatactaa agcggggttt gttgtcgcgt ttttcgcggg tattcagaga ctcaatcgtt
      421 tcggtcagca ggcgttgtat ttcggtcatc gtttgccttc gtggtatctg caactttcca
      481 gggaacaccc tattttaacg tgggaatagt agaggggaag taacagatct accacaattt
      541 tgcataacag ttgcgaaaaa ccgattacaa ttttttaatt attctggctg gattaccgcc
      601 cacgacaacg ttgtccggga caccttttgt gacaactgca cctgaagcta ccacgacgtt
      661 atcaccaatg gtcacaccag ggttaatgac cgcgcgtccg ccaatccaga cgttattacc
      721 gatggtgacg ggtttcccca gttcagcacc gctattacgt gctacagggt cgatgggatg
      781 tgttgccgtg tagatatgaa cgcctggtgc caacatacag ttatcaccga tgcgaatagg
      841 gcagacatca agcatcacgc aatcgaagtt ggcgaaaaaa ttattgccga gaaaaatgtt
      901 atagccataa tcacagcgaa acgttggctc aatataagcc tctgtcacct gaccgaataa
      961 atcagcgaga atttgctggc gtaatgtgtg ctcttccgcc agggaatgat tgtatcggtg
     1021 aataagctga cgagcgcgca ggcgatcgcg agataacgtc tcatctgccg agcgatacaa
     1081 ctcaccagca atcatctttt ctttttctgt gctcattact gacctccggt tgctggaaat
     1141 gcggcaacac agtaagacga aaagtcagtg aacagaacgt tcccattaca tctgtgtgat
     1201 aaagatcaca tagggtatgt cttcatggtg aaaaagtata aaattcttaa taaacagccg
     1261 gttatagctc cgaaagcgaa ttatttatta gcgaataaat ttccatactg aggaagggat
     1321 cttgtcgtat agtttattca tggtcaattc ggcgaggcgg tgatctgcgg ctgagtaaaa
     1381 taccgccagt tcattatctg ataattcgta tttatttttc tcgataacac gctccagcgt
     1441 gtcaattgtc tggcaacgac gtaaacgcat taaataatcg gttttcgtta aaggcttttc
     1501 ggacatactt ctacccatgg ttgtaataat tctaacaaga taaactcgca ggattctctt
     1561 tcgtcgcatt gacaaaacaa cggaatagtc gattacctga cttccgccat ttctgaagat
     1621 cctgcatatt aataccataa ctactgaaca acataaaggt gtcatccaga tattcgtcga
     1681 tctgctcaat gagcttattg tcttcattat acttaatttt gtaattaagt gcgaaggtcg
     1741 caatatgctc aatcagttca ttcaactgga ggttgatcgc cgaggttggg tcgttaaccc
     1801 agccataatt gctttcttca aggtttgcaa ggcagtcatg atacagggtt tcacagagaa
     1861 acttaagctg tgcgatatca tgtcttttgg gtgagtattc atccataacg cgtccccttc
     1921 ttagcggttg aactaacgga cacctttcgg gatggaaaaa acttactgac ctggacttgc
     1981 cctctcgttt gttagcttaa ctataagcca ctctttgcag gtattcattg cattattacg
     2041 aaaaattaca attaggaagg aatcgggaca ggactcactt tttcatacta gcactaaccc
     2101 gcagcaggta aaagcagttt gctcgaactg ttcataacat ttcaggatta tcgccagatg
     2161 aaattggtga cactaatacc aggattgctc tgaatatgac gtaataaccg aggaatgaat
     2221 aaagaattac cgcaaataat taagaatagc ctctaaatga ttatggatta ttaaatctat
     2281 tagcgctact taatataaat taactaacaa tcagtatttt ttatgaattt tatccgtggt
     2341 taatactggt tttcgtatga gatcctgagt tggtggttca attactcctt aatgttcgta
     2401 ggttatgcat aaaaaaggcc gcttgcgcgg ccttagtgat tacacgttgt atcaatgatg
     2461 atcgacagta tggctgtgct cgatatcttc attcttgcgg ctaaagcggc ggcgaaccac
     2521 cacaaagaat accggaacga agaagattgc cagtaccgtt gcggtcacca tcccgcccat
     2581 tacaccggta cctactgcgt tctgcgcgcc ggaaccagca ccagtactga taaccagcgg
     2641 cataacgccg aggataaacg ccagcgaggt catcaggatc ggacgtaaac gcatccgcac
     2701 tgcatcaagc gtcgcttcaa tcagaccttt accttcttta tccatcaagt ctttggcgaa
     2761 ttcgacgata agtatcgcgt tcttcgccga caacccaatg gttgtgagca ggcctacttg
     2821 gaagtaaacg tcattggtca ggccacggaa ggtggcagcc agcaacgcac cgataacccc
     2881 cagcggaacg accagcataa cggagaacgg aatcgaccag ctctcgtaca gcgccgctag
     2941 acacaggaat acgacaatca acgaaatcgc gtacagtgaa ggtgcctggt tgccggagag
     3001 gcgttcctga taggacatcc ccgtccagtc atagccaaca ccggtaggca gtttgctcgc
     3061 cagttgttcc attagctcca ttgcttcacc ggtactttta cccggtgccg cctggcctaa
     3121 gatttccatg gatggcaggc cattgtaacg ttccagacgc ggcgaaccgt actcccaacg
     3181 agaagaggag aatgccgaga acggcaccat ctgaccatca gcagcacgaa cataccagtc
     3241 gccgatatca tccggcagca tacggtattt cgcttctgac atgacgtaaa ctttcttcac
     3301 acgaccgcgg tcgataaagt cgttcacata gctaccgccc catgcagcgc ccagagtggt
     3361 gttaatgtcg ttgatagaaa cacccagcgc ctgcgctttt tcctggtcga tatcaatctt
     3421 aaactgcggg gtatcttcca gaccgtttgg acgtacgctg gtcaacatat caggatgctt
     3481 tgctgcttct gcaagcagct ggttacgcgc ctgagtcagt ttttcgtgac caaggccagc
     3541 ctggtcaatc agctcaaagt caaagccggt tgcagtaccc agttccacga ttgcgggtag
     3601 gttaaaggcg aaaaccatcg catctttgat ttgcgagaaa gcgcgtgttg cacgcatggt
     3661 aatcgcttca actttgtttt cttcgcccgg acgatcggcc cagtccttca aggaaacgaa
     3721 cgcaataccg gtattctgac cacgtcccgc aaagccgaag ccgttaacgg cgaacaccga
     3781 ctcaacgttg ttcttttctt tggtcagata gtaatgcgtt acctcattga gcactttctg
     3841 cgtacgttcc tgcgttgcac ctgctggcag ctgaaccatg gtcataaata cgccctggtc
     3901 ctcatctggc aagaaggagc ttggcagacg cacgaacaga taggccatgc cgaccacgat
     3961 gatcagatac agcaccaggt aacgccccgt actgcgcaga ataccgccta cgctgtcggt
     4021 gtagtggtgc gtgctcttct cgaacatgcg gttaaaccag ccgaagaagc cttttttacc
     4081 ttccccgtga tcgcctttgg caatcggttt cagcatggtg gcacaaagag ccggagtcag
     4141 gatcaacgct accagtaccg acagcgccat tgctgaaaca atggtaatag agaactgacg
     4201 atagatagca ccagtagaac cgccaaagaa ggccatcggt acgaataccg ctgacagtac
     4261 catcgcgata ccgaccagag cgccctgaat ctgccccatc gacttacggg tagcttcttt
     4321 tggcggcaaa ccttcttccg ccataacacg ctccacgttt tctaccacaa cgatagcgtc
     4381 atccaccaac aagccgatgg cgagcaccat cccgaacatt gttagcgtgt ttatcgagaa
     4441 gccaaaggcg gcaaggacgg caaaggtccc gagcaatacc accggtacgg caatggtcgg
     4501 aatcaacgtc gcgcggaagt tctgcaggaa cagatacata accaggaaca cgaggatgat
     4561 cgcttcgacc agcgttttaa ccacttcgtg aatagagatt ttcacgaacg gcgtggtgtc
     4621 gtacgggtaa acaattttca gacccgacgg gaagaacggt tccatcttcg ccagttcagc
     4681 acggattgcc gcagcggtat ccagcgcatt tgcaccggtc gccagcttga tccccagacc
     4741 ggaagccggt tggccgttaa actctgcgat gatgtcgtag ttctcaccac ccagctcaat
     4801 cttcgccaca tcacgcagca ggacgcggga accatcctga ttcactttca gcaggatttt
     4861 gccgaactct tcagtagagg tcagacgcgt ctgagcaata atagaggcgt taagctgttg
     4921 gcctttcacc ggcggcgtac caccgagctg acccgccgca acctgggcgt tctgcgcttt
     4981 gatggcggta atgacatcaa ccggcgttag ctggaatttg ttcagctcat tcgggttcat
     5041 ccagatacgc atcgcgtact gtgaaccgaa caactgaaca tcacccacgc ccgacgtacg
     5101 gctgatggca tctttcatat tcgccgctac gtagtcagag atatcctcct gcgtcatggt
     5161 gccatcggtg ttgataacgc cgacaaccat caggaagctg ctggatgatt tctcaacgct
     5221 caccccttgc tgctgaactt cttgcggcag caacggcatc gccagctgca gtttgttctg
     5281 cacctgaacc tgcgcgatat ccgcatcagt accagactca aaggtcaggg tgatctgcac
     5341 ggtccccgtg gagtcactgt tagaggacat gtacatcagg ttatcgatac cgttcatatt
     5401 ctgttcgata acctgtgtca ccgtgtcctg cactgttttc gcatcagcgc cggggtagga
     5461 ggcggagatc gttactgccg gcggtgcaat cgtaggatat tgcgccaccg gcagtttgag
     5521 gatcgccagc ccccctgcca acatgatgat aatggcgatc acccacgcaa aaatcgggcg
     5581 atcgataaag aaattaggca tgtcttaacg gctcctgttt aagttaagac ttggactgtt
     5641 caggctgagc accgcttgcg gcttgctggt tattatcagc ggtaacttct tgtgctttta
     5701 cctggacacc aggacgcact ttctgcagcc cacttattac tacgcgatcg cctgctttca
     5761 gaccttctgt caccagccac ttatcgccaa tagcctggct tgcaacgatc ggacgggttt
     5821 ccactttgtc atccgcgcca actaccagta cggtggcatc accacgcggc gtacgggtta
     5881 cgccctgttg cgggactaaa atagcgtttg gattaagccc ttcttccaga cgtgcgcgca
     5941 cgaacatacc cggcagcaga gtgtgatccg ggttcgggaa gatagcgcgt agggtgatag
     6001 acccagtggt ctgatcaacg gtaacgtcag agaattccag cgtaccgtcc tgcgggaact
     6061 taatgccgtc actggtgatc agcgacactt tggctttgcc gttctcttgt ttcagcgtgc
     6121 cattcgccag ttcctgtttc aggcgcagga agtcgttgct ggactgggtc acatcaacgt
     6181 agatcggatc aagttgctgc acggttgcca gcgcagttgc ctgaccgttc tgtaccaatg
     6241 cgccttccgt cacgttcgac ttaccaatgc gaccgctaat cggagcggtg actttggtgt
     6301 aagccagatt gatccgcgca gtttcaacgg cagctttcgc cgcagttacc gcagcattcg
     6361 cctgttgcgc atcagccaga gcctgatcgt actcttgctt actgatgtac tgagtaccga
     6421 gcagtttctg ataacgattc accgtcaatt gcgcgatatt ggctgcagcc tgggctttcg
     6481 ccagatcacc tttcgcactg tcgtatgtcg cctgataggt cgcaggatca atctgataga
     6541 gagagacacc agcttcgatg tcgctacctt ctttgaaatt acgcttcagg ataatcccgc
     6601 taacttgagg acgaacttct gcgatccggt aggcactggt gcgacccgga agctcggttg
     6661 tgatctgcag aggttcagtt ttgactgtta ctacgccaac ggcgggcatc tgctggccac
     6721 cttgttgggc ctgtttgttg tcacatcctg ttagggctaa gctgcctgag agcatcagaa
     6781 cgaccgccag aggcgtaaac cctctgtttt tgttcatatg taaacctcga gtgtccgatt
     6841 tcaaattggt caatggtcaa aagttaataa acccattgct gcgtttatat tatcgtcgtg
     6901 ctatggtaca tacattcaca aatgtatgta aatctaacgc ctgtaaattc acgaacatat
     6961 ggcacgaaaa accaaacaag aagcgcaaga aacgcgccaa cacatcctcg atgtggctct
     7021 acgtcttttc tcacagcagg gggtatcatc cacctcgctg ggtgagattg caaaagcagc
     7081 tggcgttacg cgcggtgcaa tctactggca ttttaaagac aagtcggatt tgttcagtga
     7141 gatctgggaa ctgtcagaat ccaatattgg tgaactagag cttgagtatc aggcaaaatt
     7201 ccctggcgat ccactctcag tattaagaga gatattaatt catgttcttg aatccacggt
     7261 gacagaagaa cgacgtcgat tattgatgga gattatattc cacaaatgcg aatttgtcgg
     7321 agaaatggct gttgtgcaac aggcacaacg taatctctgt ctggaaagtt atgaccgtat
     7381 agaacaaacg ttaaaacatt gtattgaagc gaaaatgttg cctgcggatt taatgacgcg
     7441 tcgggcagca attattatgc gcggctatat ttccggcctg atggaaaact ggctctttgc
     7501 cccgcaatct tttgatctta aaaaagaagc ccgcgattac gtcgccatct tactggagat
     7561 gtatctcctg tgccccacgc ttcgtaatcc tgccactaac gaataaccct gaatctgact
     7621 ccaggatttt tcctggacat tttcgtcgtt gctattctgg ttcactgcgt cgtgatattc
     7681 ttgcggtttg actttttcag gtcgttcttc aggttcagaa accttcattc atcatgacta
     7741 tgttccagta ttacaaacga tcacggcatt ttgttttttc agcatttatt gcttttgttt
     7801 ttgtcttgtt atgccagaac acggcgtttg cgcgggcgtc atcgaatggt gatctgccga
     7861 caaaagcgga cctgcaggcg caacttgact cactaaataa acaaaaagat ctttctgctc
     7921 aggacaaact ggagctgcag gatctgacag atacattagc caccctcgat aaaatcgatc
     7981 gcataaaaga agagacagtt cagctacggc aaaaagtcgc tgaagcgccg gaaaaaatgc
     8041 gccaggcgac cgcggcgtta acagcactta gcgatgtcga taacgacgaa gaaacgcgca
     8101 aaattctgag tacgctttcg ttgcgccagc tggaaactcg cgttgcccag gcgctggacg
     8161 atttgcaaaa cgcacaaaac gatctggcgt cttataacag ccagctggtt tcgttacaga
     8221 cgcagcccga acgcgtgcaa aatgcgatgt ataacgcttc gcagcagctg caacaaattc
     8281 gcagtcgtct ggatgggact gatgtcggcg agactgcctt acgtcccagc cagaaagtgt
     8341 taatgcaggc tcagcaggcg ttgctgaatg cggagattga ccagcagcgt aaaagcctgg
     8401 aagggaacac cgtcttgcag gataccttgc aaaagcaacg tgattacgtg acggcgaaca
     8461 gcgcccgtct ggagcaccag ttgcagctgt tgcaagaagc ggtaaacagc aagcgcctga
     8521 ctttaactga aaaaacggcg caggaagccg tctccccgga tgaagccgcg cgtattcagg
     8581 ctaatccgct ggtgaaacag gaactggaaa ttaaccagca gttaagtcag cgtctgatta
     8641 ccgcgactga aaacggtaat cagttgatgc agcaaaacat taaagtcaaa aactggctgg
     8701 agcgggcgct gcaatcggaa cgcaatatta aagagcagat tgccgtcctg aagggcagcc
     8761 tgctgttgtc tcgtatcctt taccagcaac aacaaacgct gccctcggcg gatgaactgg
     8821 aaaacatgac caaccgcatc gcggatttgc gtctcgaaca gtttgaagtt aaccagcagc
     8881 gtgatgcact cttccagagc gatgcgttcg tcaacaaact ggaagaaggt cacaccaacg
     8941 aagtcaacag cgaagttcac gatgcgttat tgcaagtggt tgatatgcgt cgcgaattgc
     9001 tggatcaact caacaaacag ttgggtaacc agctgatgat ggccattaac ctgcaaatca
     9061 accagcagca gttaatgagc gtatcgaaaa acctgaaatc catcctgact cagcaaatct
     9121 tttgggtgaa cagtaaccgt ccaatggact gggactggat caaagcgttc ccgcaaagcc
     9181 tgaaagatga atttaagtcg atgaaaatca cggtgaactg ggaaaaagcc tggcctgccg
     9241 tttttatcgc tttcctcgcc ggtttgccgc tgctgttgat tgtcgggctg atccactggc
     9301 gtctgggctg gctgaaagcg tatcaacaaa aactggcttc cgctgtgggt tccctgcgta
     9361 acgatagcca gctcaacaca ccaaaagcga tccttatcga cctgatccgc gcgctgccgg
     9421 tgtgcctgat tattctcgcg gttggcttga ttctgttgac catgcagctc aacatcagcg
     9481 aactgctatg gtcgttcagc aaaaaactgg cgattttctg gctggtgttt ggcctgtgct
     9541 ggaaggtact ggagaagaac ggcgttgccg tgcgtcactt cggcatgccg gaacagcaga
     9601 ccagccactg gcgtcggcaa attgtccgca tcagtctcgc attgctgcct atccatttct
     9661 ggtctgtggt ggcagaactt tccccgctgc atctgatgga tgatgtgctg gggcaagcga
     9721 tgattttctt caacctgctg ctgattgcct tcctggtatg gccaatgtgc cgcgaaagct
     9781 ggcgtgataa agagtcgcac accatgcgac tggtcaccat taccgtgctg tcgattatcc
     9841 cgattgcatt gatggtgctg actgccacgg gttatttcta caccacgctg cgcctctccg
     9901 ggcgttggat tgaaaccgtt tatctggtga tcatctggaa cttgctctac cagacggtat
     9961 tgcgcggctt aagcgtagcg gcgcggcgta tcgcctggcg tcgtgcgctg gcgcgtcggc
    10021 agaatctggt gaaagagggc gcagaaggtg ccgaaccgcc ggaagaaccc accattgcac
    10081 tggaacaggt taaccagcag acgctgcgta ttaccatgtt gctgatgttt gcgctgttcg
    10141 gtgtcatgtt ctgggcaatt tggtccgatt tgatcaccgt gttcagctat atcgacagca
    10201 ttacgctctg gcattacaac ggtactgaag ctggcgctgc ggtggtgaaa aacgtcacca
    10261 tgggcagtct gttgtttgcg attatcgcct caatggtggc ctgggcgttg attcgcaacc
    10321 tgcctggttt gctggaagtg ctggtgctct cgcgactgaa tatgcgccag ggcgcgtcgt
    10381 atgccattac taccatcctt aactacatca ttattgccgt tggtgcgatg acggtgttcg
    10441 gatcgctggg cgtctcttgg gataaactcc agtggctggc ggcagcatta tccgtaggtc
    10501 ttggttttgg tttacaagaa attttcggta acttcgtctc cggtttgatc attctgttcg
    10561 aacgtccggt gcgtattggc gatacggtaa ccattggtag cttctcgggg acggtaagta
    10621 agatccgtat tcgtgcgaca acgattaccg atttcgatcg caaagaagtg atcatcccga
    10681 acaaagcgtt tgttaccgag cgtctgatca actggtcgtt gactgacact actacgcgtc
    10741 tggtgatccg tctcggcgtg gcctatggct ccgatctgga aaaagtgcgt aaagtgttac
    10801 tgaaggcggc gactgagcac ccaagggtga tgcacgaacc aatgccggaa gtcttcttta
    10861 cggcgtttgg tgccagcacg ttggatcatg agctgcgtct gtatgtgcgt gaactgcgtg
    10921 accgtagtcg tactgtcgat gagctgaacc gtactatcga tcagctgtgc cgtgaaaacg
    10981 acatcaacat tgcctttaac cagcttgaag tgcatctgca caacgagaag ggcgatgagg
    11041 tgacggaagt aaaacgcgac tacaaaggcg atgacccgac gccagcggta gggtaataac
    11101 caaagggggc gacatttagt tgccccgaga ttactgacaa agtgcgcgtt gttcatgccg
    11161 gatgcggcgt gaccgcctta tccggcctac gaaaccgcaa gaattcaatg tattgcagga
    11221 gcggtgtagg cctgataagc gtagcgcatc aggcagtttt gcgtttgccc acaatcttag
    11281 gggacattta gcggccccat ttatttctca cttttccgcc tcatcatcgc gcgttaattt
    11341 cttttcataa tcgcgtttta caatatccag cgcgcgcagc acggtgcggg ctgggatctg
    11401 attttcttcc agcagcacaa tcaaatcgac agccagtttg acatcgtcag gggcattttc
    11461 cagtgacata ctctctccat tgctagcggg ttaagcgcgc tagcctgttt tcgatttttt
    11521 ccagcgcatg gcggcagcgt gccaggcgcg cttcataggc ttccacttca cgatgcagcg
    11581 tttgctgttc cacgagatcg gtcacccgcg ccaggcgggc tctgcgttcg gcaaccatct
    11641 cacgtagccg ccgctcaaaa tcctgatgct gaatacgttt acgctgccag cgggcaattt
    11701 tcggtggcgc actgtcccac tcgcgcaatg accaggcgga ggcttcacgc gcgatggctt
    11761 ccagttgtgc cgccagatgt tccgccagcc aggccacttg cggcagctgt tgctgctcaa
    11821 ctgcatgacg aagcgcagcc agattatcgc cagcctcatc gagacaagcc tgcagtgttg
    11881 tcgtacgggt ttgaaaaagg tgtctgtcaa aacgggcact tagcgtggca aattgcgcta
    11941 ccggggcaca acgctgacgc agcgtagcga gctgtccttc cagtttttcc agcagcaggg
    12001 cggttttcac gataagacct caatgaaaat gataattgtt atgctaaagt agccactctg
    12061 taagctgaca acactcaata tgcaacgaat cattttaatc atcattggct ggctggcggt
    12121 agtgctgggt acgctgggcg tggtattacc ggtattaccg acgacgccgt ttatcctgct
    12181 ggcggcctgg tgctttgccc gttcttcccc gcgctttcac gcctggttgc tgtaccgctc
    12241 atggtttggc agctatctac gtttctggca gaaacatcat gcgatgccgc gcggcgtcaa
    12301 accgcgggcg attttgctta ttttgctcac gtttgccatt tctctgtggt tcgtccagat
    12361 gccatgggtg cgcatcatgt tgctggtaat tctcgcctgt ttgcttttct atatgtggcg
    12421 aattccggtg attgatgaaa agcaagaaaa gcactgaagc acaacaatcg cagttgcaat
    12481 tattgcgtac agccagtaca ttctggcgtt ttcgagcaca ggcgcaggcg gtcaaaggtt
    12541 aaacaactgt tacttttgat acgtttaaaa cgcgccgtga gtaccaccgt aacaagcagg
    12601 catacactta tgaccgcgac tgcacagcag cttgagtatc tcaaaaatag catcaaaagc
    12661 attcaggact acccaaaacc cggcattctt ttccgcgatg tcaccagctt actggaagac
    12721 ccgaaagctt acgctctcag catcgacttg ctggttgagc gttacaaaaa tgcgggcatt
    12781 accaaagttg tcggcaccga agcgcgtggc ttcttgtttg gcgctccggt agctctgggt
    12841 ctgggcgttg gctttgtacc ggtccgtaaa ccgggcaaac tgccgcgtga aaccatcagt
    12901 gaaacttacg acctggaata cggcaccgat cagctggaga tccacgttga tgccatcaaa
    12961 ccgggcgaca aagttctggt ggtggacgat ctgctggcaa ccggcggcac tatcgaagcg
    13021 accgttaaac tgatccgtcg tctgggtggt gaagtggctg acgctgcgtt cattatcaac
    13081 ctgttcgatc tcggcggcga acagcgtctc gaaaaacagg gcattaccag ctacagcctt
    13141 gtcccgttcc cgggccatta attatcgcca gtcttgtgct gcccacgcta cggacagcac
    13201 aagatgtgca ttcagcctcg ccgttctgac ggggctgtgt tagcattacc ccttcgtgaa
    13261 tccaccttcc agcgtttcag agcctgccaa tgagttatca ggtcttagcc cgaaaatggc
    13321 gcccacaaac ctttgctgac gtcgtcggcc aggaacatgt gctgaccgca ctggcgaacg
    13381 gcttgtcgtt agggcgtatt catcatgctt atcttttttc cggtacccgt ggcgtcggaa
    13441 aaacctctat cgcccgactg ctggcgaagg ggctaaactg cgaaaccggc attaccgcga
    13501 cgccgtgcgg cgtgtgcgat aactgtcgtg aaatcgagca ggggcgcttt gtcgatctga
    13561 ttgaaatcga cgccgcctcg cgcaccaaag ttgaagatac ccgcgacctg ctggataacg
    13621 tccagtacgc tccggcgcgt ggtcgtttca aagtttatct gatcgacgaa gtgcatatgc
    13681 tgtcgcgcca cagctttaac gcactgttaa aaacccttga agagccgccg gagcacgtta
    13741 agtttctgct ggcgacgacc gatccacaga aattgccggt gacgattttg tcgcgctgtt
    13801 tgcaatttca tctcaaggcg ctggatgtcg agcaaattcg ccatcaactt gagcacatcc
    13861 tcaacgaaga acatatcgct cacgagccgc gggcgttgca attgctggcg cgcgccgctg
    13921 aaggcagcct gcgagatgcc ttaagtctga ccgaccaggc gattgccagc ggtgacggcc
    13981 aggtttcaac ccaggcagtc agtgcgatgc tgggtacgct tgatgacgat caggcgctgt
    14041 cgctggttga agcgatggtc gaggccaacg gcgagcgcgt aatggcgctg attaatgaag
    14101 ccgctgcccg tggtatcgag tgggaagcgt tgctggtgga aatgctcggc ctgttgcatc
    14161 gtattgcgat ggtacaactt tcgcctgctg cacttggcaa cgacatggcc gccattgagc
    14221 tgcggatgcg tgaactggcg cgcaccatac cgccgacgga tattcagctt tactatcaga
    14281 cgctgttgat tggtcgcaaa gaattaccgt atgcgccgga ccgccgcatg ggcgttgaga
    14341 tgacgctgct gcgcgcgctg gcgttccatc cacgtatgcc tctgcctgag ccagaagtgc
    14401 cgcgccagtc ctttgcaccc gtcgcgccaa cggcagtaat gacgccaacc caggtgccgc
    14461 cgcaaccgca atcagcgccg cagcaggcac cgactgtacc gctcccggaa accaccagcc
    14521 aggtgctggc ggcgcgccag cagttgcagc gcgtgcaggg agcaaccaaa gcaaaaaaga
    14581 gtgaaccggc agccgctacc cgcgcgcgtc cggtgccatc ggcgctggaa aaagcgccag
    14641 ccaaaaaaga agcgtatcgc tggaaggcga ccactccggt gatgcagcaa aaagaagtgg
    14701 tcgccacgcc gaaggcgctg aaaaaagcgc tggaacatga aaaaacgccg gaactggcgg
    14761 cgaagctagc ggcagaagcc attgagcgcg acccgtgggc ggcacgggtg agtcaacttt
    14821 cgctaccaaa actggtcgaa caggtggcct taaatgcctg gaaagaggag agcgacaacg
    14881 cagtatgtct gcatttgcgc tcctctcagc ggcatttgaa caaccgcggt gcacagcaaa
    14941 aactggctga agcgttgagc acgttaaaag gttcaacggt tgaactgact atcgttgaag
    15001 atgataatcc cgcggtgcgt acgccgctgg aatggcgtca ggcgatatac gaagaaaaac
    15061 ttgcgcaggc gcgcgagtcc attattgcgg ataataatat tcagaccctg cgtcggttct
    15121 tcgatgcgga gctggatgaa gaaagtatcc gccccatttg atcgtaagca cagcttacgt
    15181 tcgtcatcct taacgtgatt gagagagaaa cctatgtttg gtaaaggcgg tctgggtaac
    15241 ctgatgaagc aagcccagca gatgcaagaa aaaatgcaga aaatgcagga agagatcgcg
    15301 cagctggaag tcaccggcga atctggcgca ggtctggtaa aagtgaccat caacggtgca
    15361 cacaactgcc gtcgcgtaga gatcgacccg agcctgctgg aagacgacaa agagatgctg
    15421 gaagacctgg tggctgcagc attcaacgac gcagcacgtc gtattgaaga aacgcagaaa
    15481 gaaaaaatgg cctctgtatc ctccggaatg cagctgccgc ctggctttaa gatgccgttc
    15541 tgatgcaaac cagcccgctg ttaacacagc ttatggaagc actgcgctgt ctgtcgggcg
    15601 ttggcccgaa gtcggcgcag cgtatggcgt tcacgctgct tcagcgcgat cgtagcggcg
    15661 ggatgcgtct ggcgcaggcg ctcacccggg cgatgtcgga aatcggccac tgcgccgatt
    15721 gccgcacttt caccgaacag gaagtctgta acatctgttc gaatccgcgt cgtcaggaaa
    15781 acggtcaaat ctgtgtggtg gagagtccgg cggacatcta cgccattgag cagacggggc
    15841 agttttctgg tcgttatttt gtgttgatgg ggcatctgtc accgctggac ggcatcggtc
    15901 cggatgatat cgggcttgat cgtctggaac agcgtctggc agaggaaaaa atcactgaag
    15961 tgatcctcgc caccaatccc acggttgaag gtgaagctac cgctaactac attgccgagc
    16021 tttgcgcgca atatgacgtg gaagctagcc gaatcgctca tggcgtaccg gttggcggcg
    16081 aactggaaat ggtcgatggc accacgctgt cacactccct tgccgggcgt cataagattc
    16141 gtttttaagc aaacgagagc aggatcacct gctctcgctt gaaattattc tcccttgtcc
    16201 ccatctctcc ctcatcctgt ttttaacctt aaaatggcat tattgaggta gacctacatg
    16261 aaaggacaag aaactcgtgg ttttcagtca gaagtgaaac agcttctgca cctgatgatc
    16321 cattctctct attccaataa agaaatcttc ctgcgtgagc ttatctctaa cgcctccgat
    16381 gcggcggaca agctgcgttt ccgtgcgcta tctaacccgg acctgtacga aggtgatggc
    16441 gaactgcgcg ttcgtgtctc tttcgataaa gacaagcgca cgctgaccat ctccgataac
    16501 ggcgtgggga tgacccgcga cgaagtgatt gaccatctgg ggactatcgc taaatccggt
    16561 accaaatcat tcctcgaatc cctgggttct gaccaggcga aagacagcca gctgatcggt
    16621 cagtttggtg ttggtttcta ctctgcgttt atcgtggccg acaaagtgac tgtgcgtact
    16681 cgcgcggcag gcgaaaaacc agaaaacggc gtcttctggg aatcggctgg cgaaggtgaa
    16741 tataccgttg ccgacatcac caaagaagat cgtggtactg aaatcaccct gcatctgcgt
    16801 gaaggcgaag acgagttcct cgatgactgg cgcgtgcgtt ccatcatcag caaatactcc
    16861 gaccatatcg cgctgccggt agagatcgaa aaacgcgaag agaaagacgg cgaaaccgtt
    16921 atctcctggg agaaaatcaa caaagcgcag gcgctgtgga ctcgtaacaa gtcggaaatc
    16981 accgatgaag agtacaaaga gttctacaaa cacatcgccc acgactttaa tgatccgctg
    17041 acctggagcc acaaccgcgt tgaaggtaag caggagtaca ccagcctgct gtacatcccg
    17101 tcccaggctc cgtgggatat gtggaaccgt gatcataaac acggcctgaa actgtacgtc
    17161 cagcgtgtgt tcatcatgga cgacgcagaa cagttcatgc cgaactatct gcgcttcgtg
    17221 cgtggtctga ttgactccag cgatctgccg ctgaacgttt cccgtgaaat cctccaggac
    17281 agcacggtaa cgcgtaacct gcgcaatgcg ctgaccaagc gtgtgctgca aatgctggaa
    17341 aaactggcga aagacgacgc ggaaaaatac cagaccttct ggcaacagtt tggcctggta
    17401 ctgaaagaag gtccggcgga agatttcgct aaccaggaag cgatcgccaa actgctgcgt
    17461 tttgcttcta cccataccga ttcttctgcg cagaccgtat ctctggaaga ctacgtttcc
    17521 cgcatgaaag aagggcagga gaaaatctac tacatcaccg cagacagcta tgcggcagcg
    17581 aagagcagcc cgcacctgga actgctgcgt aagaaaggca tcgaagttct gctgctttcc
    17641 gaccgcatcg atgagtggat gatgaactat ctgactgagt tcgacggtaa accgttccag
    17701 tcggtgtcta aagttgacga gtcgctggaa aaactggctg acgaagttga tgagagcgcg
    17761 aaagaagcgg agaaagcact gactccgttc atcgaccgtg tgaaagcctt gctcggcgag
    17821 cgcgtgaaag atgtccgtct gactcaccgt ctgaccgata cgccagcgat cgtttcgacc
    17881 gacgcggacg aaatgagcac tcagatggcg aaactgttcg ctgcggcggg ccagaaagtg
    17941 ccagaagtga aatacatctt cgaactgaac ccggatcacg tactggtgaa acgtgcggca
    18001 gatactgaag atgaagcgaa gttcagcgag tgggtagaac tgctgctgga tcaggcgctg
    18061 ctggcagaac gcggcacgct ggaagatccg aacctgttta ttcgtcgtat gaaccagctg
    18121 ctggtttcct gatgtcatgc cggatgacct ttgtgtcatc cggcattttt cttttcatca
    18181 tctgcacttt ccgcaaatta tctcgccatt aaccgtttca gcctcaggtg cctttcttga
    18241 ggcaatcgcc tgttggtggt atcgtttatc gctttttcaa aaaattcgac acattttaag
    18301 gggattttcg caatgcgtat cattctgctt ggcgctccgg gcgcggggaa agggactcag
    18361 gctcagttca tcatggagaa atatggtatt ccgcaaatct ccactggcga tatgctgcgt
    18421 gctgcggtca aatctggctc cgagctgggt aaacaagcaa aagacattat ggatgctggc
    18481 aaactggtca ccgacgaact ggtgatcgcg ctggttaaag agcgcattgc tcaggaagac
    18541 tgccgtaatg gtttcctgtt ggacggcttc ccgcgtacca ttccgcaggc agacgcgatg
    18601 aaagaagcgg gcatcaatgt tgattacgtt ctggaattcg acgtaccgga cgaactgatt
    18661 gttgatcgta tcgtaggccg ccgcgttcat gcgccgtctg gtcgtgttta tcacgttaaa
    18721 ttcaatccgc cgaaagtaga aggcaaagac gacgttaccg gtgaagaact gactacccgt
    18781 aaagacgatc aggaagaaac cgtacgtaaa cgtctggttg aataccatca gatgactgca
    18841 ccgctgatcg gctactactc caaagaagcg gaagcgggta acaccaaata cgcgaaagtt
    18901 gacggcacca agccggttgc tgaagttcgc gctgatctgg aaaaaatcct cggctaatca
    18961 agccgcagca gatctgcttt cgggcaggtc tgctcatcca cctcaggcaa tacctctcac
    19021 agcaattagt tcttcttcct cacttttccg ctacaattat caacaagttg aatcgataag
    19081 aggcggtaat gcgtcagact aaaaccggta tcctgctggc aaacctgggt acgcccgatg
    19141 cccccacacc tgaagcggta aaacgctatc tgaaacaatt tttaagcgac agacgcgtgg
    19201 ttgatacctc acggttgtta tggtggccat tgctgcgcgg cgttattttg ccgctgcgct
    19261 cgccgcgtgt ggcgaagctg tatgcctctg tctggatgga aggtggctcg ccgctgatgg
    19321 tttacagccg ccagcaacag caggcgctgg cacaacgttt accggagacg cctgtagcgc
    19381 tgggaatgag ctacggctcg ccatcactgg aaagcgccgt cgatgaactc ctggcagagc
    19441 atgtagatca tattgtggtg ctgccgcttt atccgcaatt ctcctgttct acggtcggtg
    19501 cggtatggga tgaactggca cgcattctgg cgcgcaaacg tagcattccg gggatatcgt
    19561 ttattcgtga ttacgccgat aaccacgatt acattaatgc actggcgaac agcgtacgcg
    19621 cttcttttgc caaacatggc gaaccggatc tgctgctgct ctcttatcat ggcattcccc
    19681 agcgttatgc agatgaaggc gatgattacc cgcaacgttg ccgcacaacg acttgcgaac
    19741 tggcttccgc actggggatg gcaccggaaa aagtgatgat gacctttcag tcgcgctttg
    19801 gccgggaacc ctggctgatg ccttataccg acgaaacgct gaaaatgctc ggagaaaaag
    19861 gcgtaggtca tatacaggtg atgtgcccgg gctttgctgc ggattgtctg gagacgctgg
    19921 aagagattgc cgagcaaaac cgtgaggtct tcctcggtgc cggcgggaaa aaatatgaat
    19981 atattccagc gcttaatgcc acgccagaat atatcgaaat gatggctaat cttgttgccg
    20041 cgtatcgcta aagctgagcg gtaaagaact gagcgccgtc gcgaagagcc tcgtcggcgg
    20101 ttttcatcat tcgtgaataa tgcaaaaagg catgcagcgt acctgggtag agtttgaact
    20161 cacagggctg ctgatgcgcc gctaacgtct ggtaaagcag acggctgtca tccagcagcg
    20221 gatcgaactc cgccccggca ataaaacagg gcggaacttc gcgagtgaga tcattattaa
    20281 acagacagta atacggtgac tcgcggtccg cgtcgttgct taaatacgcc tcttcataca
    20341 tctgcaaatc ctgttgcgtt aagccatccc agacaccgcc caacagacga cgagtcacgg
    20401 aatcccgtaa tccgtaaagc ccataccaca gcaaaacacc cacaatttta ccgcaatcga
    20461 tctgtttatc acgcaaccac aacgcactgg cgagcgccag catggcacct gcggaatcac
    20521 cggcaaagcc aatgcgggac atattgattt gataatcctc cgcctgctgg tggaaataac
    20581 aacaagcagc cacaatttcc tctatcgctt gcggaaaacg cgcttcaggt gaaagggggt
    20641 aatcaatacc aatcaccgta cattggctgt agcttgccag caggcgcatg atgcgatcgt
    20701 gggtatcgag attgccgaga ataaaaccgc ctccatgcaa ataaaatagc gtcgccgggc
    20761 tatctggctg cggacaaaag agacgtgttt ccacctgccc atattttgtt ggaaccatgt
    20821 aagctctggt tgccatttct ggagcgcccg cattccagaa tcggcgctca agcgtgtaat
    20881 actgtcgttg ctcagcaatc gttcccgttg cgggccagga cggtaaatcc ggctgaagag
    20941 tattcacaac ggtcttcatt tcagcagaaa taaggtccag aacaggtagt ttgttttccg
    21001 gcttcataca aaaactcctt tcaaattacg tcattgtaag gaaccactgc catgaaaatg
    21061 cgatcccgcc tgctgatatt gaaactggct gcgtctcgcg cgctcccgtc agattgtgtt
    21121 aacattcgcc gctcagttaa ccacccgtaa aaacaaccat gaaatttccc ggtaaacgta
    21181 aatccaaaca ttacttccct gtaaatgcac gcgatccgct gcttcagcaa ttccagccag
    21241 aaaacgaaac cagcgccgcc tgggtcgtag gtattgacca gacgctggtc gatattgaag
    21301 cgaaagtgga tgatgaattc attgagcgtt atggattaag cgccgggcat tcactggtga
    21361 ttgaggatga cgtagccgaa gcgctttatc aggagctaaa acagaaaaac ctgattaccc
    21421 atcagtttgc gggtggcacc attggtaaca ccatgcacaa ctactcggtg ctcgcggacg
    21481 accgttcggt gctgctgggc gtcatgtgca gcaatattga aattggcagt tatgcctatc
    21541 gttacctgtg taacacttcc agccgtaccg atcttaacta tctacaaggc gtggatggcc
    21601 cgattggtcg ttgctttacg ctgattggcg agtccgggga acgtaccttt gctatcagtc
    21661 caggccacat gaaccagctg cgggctgaaa gcattccgga agatgtgatt gccggagcct
    21721 cggcactggt tctcacctct tatctggtgc gttgcaaacc gggtgaaccc atgccggaag
    21781 caaccatgaa agccattgag tacgcgaaga aatataacgt accggtggtg ctgacgctgg
    21841 gcaccaagtt tgtcattgcc gagaatccgc agtggtggca gcaattcctc aaagatcacg
    21901 tctctatcct tgcgatgaac gaagatgaag ccgaagcgtt gaccggagaa agcgatccgt
    21961 tgttggcatc tgacaaggcg ctagactggg tagatctggt gctgtgcacc gccgggccaa
    22021 tcggcttgta tatggcgggc tttaccgaag acgaagcgaa acgtaaaacc cagcatccgc
    22081 tgctgccggg cgctatagcg gaattcaacc agtatgagtt tagccgcgcc atgcgccaca
    22141 aggattgcca gaatccgctg cgtgtatatt cgcacattgc gccgtacatg ggcgggccgg
    22201 aaaaaatcat gaacactaat ggagcggggg atggcgcatt ggcagcgttg ctgcatgaca
    22261 ttaccgccaa cagctaccat cgtagcaacg taccaaactc cagcaaacat aaattcacct
    22321 ggttaactta ttcatcgtta gcgcaggtgt gtaaatatgc taaccgtgtg agctatcagg
    22381 tactgaacca gcattcacct cgtttaacgc gcggcttgcc ggagcgtgaa gacagcctgg
    22441 aagagtctta ctgggatcgt taagttatcg tcggttcgta ggccagataa ggcgttcacg
    22501 ccgcatctgg catttggctc tcgatgcctg atgcgacgct ggcgcgtctt atcatgccta
    22561 catatttttc atattttaca tccggcaacc accgtttacc ccgtcaccac ctcacccgcc
    22621 ggtggcgttt ccagcagttc cagcatggta cgggcgattt cacgctcgcc catcactacc
    22681 tgattcgcac cacgttcggt gatatacgcc acttcatcgt cataatgggc gcgggcaata
    22741 atctcaatat ccggattttt cgcgcgggca gatgccacaa tctcacccgc ttcataaccg
    22801 ttgggaatcg tcaggatcag ccattttgca cattccagat gcgccagttg cataatttct
    22861 tcgttcgccg cattgcccaa tactgcgcgg accccgcgct ctcgcagctc atcaacacgg
    22921 gttcgtgacg tctcaatcac caccagcgga atatcagagg cgagcaattt ctcccccagc
    22981 aggctgccta cacgaccgta acccaccagt agcgcatggt tgcaaatatc cactgggatc
    23041 tgcttctctt cttcgattgc ctcttccagc gtctgctctt ccagcgtttc ggtcttcgcc
    23101 agatatttct ccagtagtgc gaacagtacc gggttgagca taatcgacag gatcgcccct
    23161 gccagtacca ggttttgtcc ggcctgcggc agtaaattca atgccattcc cagtcccgcc
    23221 aggataaacg cgaactcacc aatctgcgcc aggctggcgg cgatggttaa tgccgtacgt
    23281 tgggagtgac caaacagtcg caccaggaaa aatgcggcta acgacttacc aaacagaata
    23341 atcgccagcg tcgccagcac tgccagcggt tgctgaatca gaattaacgg atcaaacaac
    23401 atcccgacgg agacaaaaaa cagcaccgca aacgcgtcgc gcaatggcag cgtatcgtgg
    23461 gcggcacggt gactcagttc agactcgttc agtaccatcc cggcaaagaa cgcaccgagt
    23521 gcaaaggaga catcaaacag ctctaccgca ccaaaggcaa tccctaacgc cagcgccagc
    23581 accgacaggg taaacagctc gcgagaaccg gttgccgcgc tgcgtgccat aatccacggc
    23641 accagacggc gacctaccag catcataatg gcgataaatg cgatcacttt gccgatggtg
    23701 atccccatat cgactgcaag agtggcaaag cccacatcgc cctgttccat cattcctgcc
    23761 actgcgggca gcaacaccag cgtcagaacc attaccaggt cttccacaat caaccaaccg
    23821 atggcgattt gcccacgctg actgtcaatt aattgccgtt cttcaagtgc gcgcagtaac
    23881 accacggtac tggcggtgga aagacataaa ccgaacacga taccggtcat taacgaccag
    23941 cccagcacgg cagagagcgc catacccagc agcgtcgcca cggctatctg ggcgatcgca
    24001 ccgggaatgg cgatggcctt taccgccatc aaatccttca gcgaaaagtg caaaccgacg
    24061 ccaaacatca acagaatgac gcccagttca gccagttccg gcgcaagctt ggtatcggca
    24121 acaaagcccg gagtgaatgg tcctgccagc acacccgcta acagatatcc caccagagga
    24181 gaaatacgta gtttattggc cagcatgccg aggataaagg cgagcacaag gccgccaaca
    24241 atggtggtga taagcggggt ggcgtgatgc attccgtctc cttttcctgg tggttattgt
    24301 ccatttttgg ccgggaaaac caaaattaca ggtaatagtt tatgacaatt tcattgatga
    24361 tgttcatgaa taattattga attttgcaga aaaatggaat tagctgcaaa aaaagcacgg
    24421 atcggaaaac agaaggcggt ttaacagagg aaaggcttat ggcgactgta aaacgatgca
    24481 gccaaagttt gcctttggct gcaatgaaat cagtctttat gccggttatc aggcaggaat
    24541 atggtcaaca tccccaatag tggcaggaaa gcacagattt tatagactaa ctcgatgctg
    24601 gtgtgatcgg cgataagccc cagaactgcc gctcccagac ctcccatgcc aaaagcaaaa
    24661 ccgaaaaaga gtccagaaac cataccgata cgtcccggaa gtagctcctg agcgtagacc
    24721 agaatggcag agaatgccga agcgaggata aatccaataa tcaccgttaa aacccccgtc
    24781 cagtgcaggc tggcgtaggg taaaatcagc gtaaacggcg caacgccgag gatagagccc
    24841 caaatcacat atttccgtcc aattttatcc cctacaggcc cgccgatcac cgtacctgcc
    24901 gcaacggcaa acaggaaggc aaacagatga agctgggcat tctggataga taatccgaat
    24961 ttttgcatca gataaaaggt gtaatag
//
LOCUS       DADMJB010000047        24059 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.047, whole genome shotgun sequence.
ACCESSION   DADMJB010000047 DADMJB010000000
VERSION     DADMJB010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24059)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24059)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24059
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.047"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            322..549
                     /gene="feoA"
                     /locus_tag="JN078_001711"
     CDS             322..549
                     /gene="feoA"
                     /locus_tag="JN078_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transporter A"
                     /protein_id="HAY9040951.1"
                     /translation="MQYTPDTAWKITGFSREISPAYRQKLLSLGMLPGSSFNVVRVAP
                     LGDPIHIETRRVSLVLRKKDLALLEVEAVSC"
     gene            566..2887
                     /gene="feoB"
                     /locus_tag="JN078_001712"
     CDS             566..2887
                     /gene="feoB"
                     /locus_tag="JN078_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(2+) transporter permease subunit FeoB"
                     /protein_id="HAY9040952.1"
                     /translation="MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ
                     FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL
                     YLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALK
                     LAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAY
                     AGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVSNTLTAEPSRFTTAVDK
                     IVLNRFLGLPIFLFVMYLMFLLAINIGGALQPLFDVGSVALFVHGIQWIGYTLHFPDW
                     LTIFLAQGLGGGINTVLPLVPQIGMMYLFLSFLEDSGYMARAAFVMDRLMQALGLPGK
                     SFVPLIVGFGCNVPSVMGARTLDAPRERLMTIMMAPFMSCGARLAIFAVFAAAFFGQN
                     GALAVFSLYMLGIVMAVLTGLMLKYTIMRGEATPFVMELPVYHVPHVKSLIIQTWQRL
                     KGFVLRAGKVIIIVSIFLSAFNSFSLSGKIVDNINDSALASVSRVITPVFKPIGVHED
                     NWQATVGLFTGAMAKEVVVGTLNTLYTAENIQDEEFNPAEFNLGEELFSAIDETWQSL
                     KDTFSLSVLMNPIEASKGNGEMGTGAMGVMDQKFGSAAAAYSYLIFVLLYVPCISVMG
                     AIARESSRGWMGFSILWGLNIAYSLATLFYQVASYSQHPTYSLVCILAVILFNIVVIG
                     LLRRARSRVDIELLATRKSVSSCCAASTTGDCH"
     gene            2887..3123
                     /gene="feoC"
                     /locus_tag="JN078_001713"
     CDS             2887..3123
                     /gene="feoC"
                     /locus_tag="JN078_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[Fe-S]-dependent transcriptional repressor FeoC"
                     /protein_id="HAY9040953.1"
                     /translation="MASLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMG
                     KAVRIQEEPDGCLSGSCKSCPEGKACLREWWALR"
     gene            3326..4204
                     /gene="rpnA"
                     /locus_tag="JN078_001714"
     CDS             3326..4204
                     /gene="rpnA"
                     /locus_tag="JN078_001714"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-promoting nuclease RpnA"
                     /protein_id="HAY9040954.1"
                     /translation="MSKKQSSTPHDALFKLFLRQPDTARDFLAFHLPAPIHALCDMKT
                     LKLESSSFIDDDLRESYSDVLWSVKTEQGPGYIYCLIEHQSTSNKLIAFRMMRYAIAA
                     MQNHLDAGYKTLPMVVPLLFYHGIESPYPYSLCWLDCFADPKLARQLYASAFPLIDVT
                     VMPDDEIMQHRRMALLELIQKHIRQRDLMGLVEQMGCLLSSGYANDRQIKGLFNYILQ
                     TGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLTDI
                     MRFTGVSEEELAAASQ"
     gene            complement(4233..5003)
                     /gene="bioH"
                     /locus_tag="JN078_001715"
     CDS             complement(4233..5003)
                     /gene="bioH"
                     /locus_tag="JN078_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709189.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl ester esterase BioH"
                     /protein_id="HAY9040955.1"
                     /translation="MNNIWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHL
                     VDLPGFGRSQGFGALSLADMAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVQAL
                     VTVASSPCFSARDDWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETARQDARA
                     LKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVPMPFLRLYGYLDGLVPRKVVPML
                     DKLWPRSKSYIFAKAAHAPFISHPVEFCHLLVALKQRV"
     gene            5041..5724
                     /gene="gntX"
                     /locus_tag="JN078_001716"
     CDS             5041..5724
                     /gene="gntX"
                     /locus_tag="JN078_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417872.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein GntX"
                     /protein_id="HAY9040956.1"
                     /translation="MLTVPGLCWLCRMPLALGHWGICSVCSRAARTDKTLCPQCGLPA
                     THSHLPCGRCLQKPPPWQRLVTVADYAPPLSPLIHQLKFSRRSEIASALSRLLLLEVL
                     HARRTTGLQLPDRIISVPLWQRRHWRRGFNQSDLLCQPLSRWLHCRWDSEAVTRTRAT
                     ATQHFLSARLRKRNLKNAFRLELPVQGRHMVIVDDVVTTGSTVAEIAQLLLRNGAATV
                     QVWCLCRTL"
     gene            5783..6358
                     /gene="nfuA"
                     /locus_tag="JN078_001717"
     CDS             5783..6358
                     /gene="nfuA"
                     /locus_tag="JN078_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016942932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S biogenesis protein NfuA"
                     /protein_id="HAY9040957.1"
                     /translation="MIRISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYC
                     PPDAVEATDTALKFDLLTAYVDELSAPYLEDAEIDFVTDQLGSQLTLKAPNAKMRKVA
                     DDAPLMERVEYMLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLK
                     EGIEKQLLNEFPELKGVRDLTEHQRGEHSYY"
     gene            6719..8035
                     /gene="gntT"
                     /locus_tag="JN078_001718"
     CDS             6719..8035
                     /gene="gntT"
                     /locus_tag="JN078_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate transporter"
                     /protein_id="HAY9040958.1"
                     /translation="MPLVIVAIGVILLLLLMIRFKMNGFIALVLVALAVGLMQGMPLD
                     KVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVV
                     LTGFTVGFALFYEVGFVLMLPLVFTIAASANIPLLYVGVPMAAALSVTHGFLPPHPGP
                     TAIATIFNADMGKTLLYGTILAIPTVILAGPVYARVLKGIDKPIPEGLYSAKTFSEEE
                     MPSFGVSVWTSLVPVVLMAMRAIAEMILPKGHAFLPVAEFLGDPVMATLIAVLIAMFT
                     FGLNRGRSMDQINDTLVSSIKIIAMMLLIIGGGGAFKQVLVDSGVDKYIASMMHETNI
                     SPLLMAWSIAAVLRIALGSATVAAITAGGIAAPLIATTGVSPELMVIAVGSGSVIFSH
                     VNDPGFWLFKEYFNLTIGETIKSWSMLETIISVCGLVGCLLLNMVI"
     gene            complement(8080..10164)
                     /gene="malQ"
                     /locus_tag="JN078_001719"
     CDS             complement(8080..10164)
                     /gene="malQ"
                     /locus_tag="JN078_001719"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HAY9040959.1"
                     /translation="MESKRLDNAALAAGISPNYINAHGKPQSISAETKRRLLDAMHQR
                     TATKVAVTPVPNVMVYTSGKKMPMVVEGSGEYSWLLTTEEGTQYKGHVTGGKAFNLPT
                     KLPEGYHTLTLTQDDQRAHCRVIVAPKRCYEPQALLNKQKLWGACVQLYTLRSEKNWG
                     IGDFGDLKAMLVDVAKRGGSFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNA
                     VEDFHLSEEAQAWWQLPTTQQTLQQARDADWVDYSTVTALKMTALRMAWKGFAQRDDE
                     QMTAFRQFVAEQGDSLFWQAAFDALHAQQVKEDEMRWGWPAWPEMYQNVDSPEVRQFC
                     EEHRDDVDFYLWLQWLAYSQFAACWEISQGYEMPIGLYRDLAVGVAEGGAETWCDREL
                     YCLKASVGAPPDILGPLGQNWGLPPMDPHIITARAYEPFIELLRANMQNCGALRIDHV
                     MSMLRLWWIPYGETADQGAYVHYPVDDLLSILALESKRHRCMVIGEDLGTVPVEIVGK
                     LRSSGVYSYKVLYFENDHEKTFRAPKAYPEQSMAVAATHDLPTLRGYWESGDLTLGKT
                     LGLYPDEVVLRGLYQDRELAKQGLLDALHKYGCLPKRAGHKASLMSMTPTLNRGLQRY
                     IADSNSALLGLQPEDWLDMAEPVNIPGTSYQYKNWRRKLSATLETMFADDGVNKLLKD
                     LDRRRRAAAKKQ"
     gene            complement(10174..12567)
                     /gene="malP"
                     /locus_tag="JN078_001720"
     CDS             complement(10174..12567)
                     /gene="malP"
                     /locus_tag="JN078_001720"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin phosphorylase"
                     /protein_id="HAY9040960.1"
                     /translation="MSQPIFNDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALA
                     EMLRAQPFAKPVANQRHVNYISMEFLIGRLTGNNLLNLGWYQEVQDSLKAYDINLTDL
                     LEEEIDPALGNGGLGRLAACFLDSMATIGQSATGYGLNYQYGLFRQSFVDGKQVEAPD
                     DWHRSNYPWFRHNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPL
                     RLWQATHAHPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQ
                     CACSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAW
                     AITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEK
                     VWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTN
                     GITPRRWIKQCNPALAALLDKLLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANK
                     VRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVP
                     RVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLQDYCVSAAEKLIP
                     AADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVE
                     QVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSIGKQGGDPYL
                     VMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQAKR"
     gene            13179..15884
                     /gene="malT"
                     /locus_tag="JN078_001721"
     CDS             13179..15884
                     /gene="malT"
                     /locus_tag="JN078_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MalT"
                     /protein_id="HAY9040961.1"
                     /translation="MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYG
                     KTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIATVQQATNGHCAICETMAQKRQY
                     ASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSR
                     NLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGW
                     ATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAI
                     LRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQW
                     ELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSL
                     LEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREGTMHAE
                     FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL
                     ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL
                     PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD
                     LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA
                     NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ
                     AGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRI
                     LREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQI
                     AGELEVAATTIKTHIRNLYQKLGVAHRQAAVQHAQKLLKMMGYGV"
     gene            complement(15927..16943)
                     /gene="rtcA"
                     /locus_tag="JN078_001722"
     CDS             complement(15927..16943)
                     /gene="rtcA"
                     /locus_tag="JN078_001722"
                     /EC_number="6.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 3'-terminal phosphate cyclase"
                     /protein_id="HAY9040962.1"
                     /translation="MKRMIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAK
                     PGLLRQHLTAVKAAAEICRATVEGAELGSQRLVFRPGAVRGGEYRFAIGSAGSCTLVL
                     QTVLPALWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIHQQTTLLRHGFY
                     PAGGGVVATEVSPVASFNTLQLGERGNIVQMRGEVLLAGVPRHVAEREIATLAGSFSL
                     HEQNIHNLPRDQGPGNTVSLEVESENITERFFVVGEKRVSAEVVAAQLVKEVKRYLAS
                     PAAVGEYLADQLVLPMALAGAGEFTVAHPSCHLLTNIAVVERFLPVRFGLIEIDGVTR
                     VSIE"
     gene            complement(16947..18173)
                     /locus_tag="JN078_001723"
     CDS             complement(16947..18173)
                     /locus_tag="JN078_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HAY9040963.1"
                     /translation="MNYELLTTENAPVKMWTKGVPVEADARQQLINTAKMPFIFKHIA
                     VMPDVHLGKDSTIGSVIPTKGAIIPAAVGVDIGCGMNALRTALTAEDLPENLAELRQA
                     IETAVPHGRTTGRCKRDKGAWENPPVNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHL
                     GTLGTGNHFIKICLDESDQVWIMLHSGSRGIGNAIGTYFIDLAQKEMQETLETLPSRD
                     LAYFMEGTEYFDDYLKAVAWAQLFASLNRDVMMENVVTALQSITQKTVRQPQTLAMEE
                     INCHHNYVQKEQHFGEEIYVTRKGAVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCS
                     CSHGAGRVMSRTKAKKLFSVEDQIRATAHVECRKDAEVIDEIPMAYKDIDAVMTAQSD
                     LVEVIYTLRQVVCVKG"
     gene            18362..19960
                     /locus_tag="JN078_001724"
     CDS             18362..19960
                     /locus_tag="JN078_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-dependent transcriptional regulator"
                     /protein_id="HAY9040964.1"
                     /translation="MRKTVAFGFVGTVLDYAGRGSQRWSKWHPTLCLCQQESLVIDRL
                     ELLHDARSCSLFETLKRDIASVSPETEVVSIEIELHNPWDFEEVYACLHDFARGYKFQ
                     PEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQTSPPRKKEQPRGAGEVTIIDLD
                     LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTG
                     AGKSFLARRIFELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREG
                     LLRSANGGMLFFDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL
                     RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHATLTGDSVRFNTE
                     ARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQES
                     RPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSATGRQLFDVSRQGKASVNDA
                     DRLRKYLARFGLTWEAVQDQHSSS"
     gene            complement(19942..20700)
                     /locus_tag="JN078_001725"
     CDS             complement(19942..20700)
                     /locus_tag="JN078_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000815090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family transcriptional regulator"
                     /protein_id="HAY9040965.1"
                     /translation="MKQTQRHNGIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNELA
                     EQNLILRHHGGAALPSSSVNTPWHDRKATQTEEKERIARKVAEQIPNGSTLFIDIGTT
                     PEAVAHALLNHSNLRIVTNNLNVANTLMVKEDFRIILAGGELRSRDGGIIGEATLDFI
                     SQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVN
                     MGSISMVDAVYTDAPPPVSVMQVLTDHHIQLELC"
     gene            complement(20717..21547)
                     /gene="glpG"
                     /locus_tag="JN078_001726"
     CDS             complement(20717..21547)
                     /gene="glpG"
                     /locus_tag="JN078_001726"
                     /EC_number="3.4.21.105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease
                     GlpG"
                     /protein_id="HAY9040966.1"
                     /translation="MLMITSFANPRVAQAFVDYMATQGVILTIQQHNQSDVWLADESQ
                     AERVRAELARFLENPADPRYLAASWQAGHTGSGLHYRRYPFFAALRERAGPVTWVVMI
                     ACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWY
                     LGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERD
                     PQSGIYLQRGLIIFALIWIIAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSLNARKRK
                     "
     gene            complement(21592..21918)
                     /gene="glpE"
                     /locus_tag="JN078_001727"
     CDS             complement(21592..21918)
                     /gene="glpE"
                     /locus_tag="JN078_001727"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase GlpE"
                     /protein_id="HAY9040967.1"
                     /translation="MDLFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLT
                     NDTLGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPA
                     EVAYGA"
     gene            22108..23613
                     /gene="glpD"
                     /locus_tag="JN078_001728"
     CDS             22108..23613
                     /gene="glpD"
                     /locus_tag="JN078_001728"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase"
                     /protein_id="HAY9040968.1"
                     /translation="METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSA
                     SSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIR
                     IGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVV
                     RKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDEGM
                     HLPSPYGIRLIKGSHIVVPRVHTQKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYK
                     GDPKAVKIEESEINYLLKVYNAHFKKQLSRDDIVWTYSGVRPLCDDESDSPQAITRDY
                     TLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLTPYYQGIGPAWTKESVLPGGAIE
                     GDRDDYAARLRRRYPFLTESLARHYARTYGSNSELLLGNAGAISDLGEDFGHEFYEAE
                     LKYLVDHEWVRRTDDALWRRTKQGMWLNADQQSRVSQWLVEYTQQKLSLAS"
     gene            complement(23665..>24059)
                     /locus_tag="JN078_001729"
     CDS             complement(23665..>24059)
                     /locus_tag="JN078_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000589351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040969.1"
                     /translation="VMAGIGWQFSRRTPPELKNRLHCWLVFSPVYFWLILSNFILYIS
                     PEKSALLENIRNFFLTFVWPPLNFSPFWPQPWTDFVGPISAQLGFALGYYCHWCRKNR
                     NQRKKWGDWVTCLSLAILAQGPLFNYLQ"
BASE COUNT         5656 a         6551 c         6080 g         5772 t
ORIGIN      
        1 caaactcata atatattccg gcaatattta tcacttcatt aacaactgaa accttaatta
       61 aacattagcc agtccgggta attcactatt cgaattatat tttcgctgcg atataacctt
      121 gagccacatc aacattgagt cagattatta ttcaaaccaa cattcgcaca cattttaagt
      181 attgctgata gaaaccattc tcattatcat tgtgttattg attatttaat ctctcctttg
      241 ttggcaaatc atctggtctc atgtcgctgt caaacgcccc atgaggtagt tatccagtta
      301 atgagaaaca agtaggcacc tatgcaatac actccagata ctgcgtggaa aatcactggc
      361 ttttcccgtg aaatcagccc ggcatatcgc caaaaactgc tttctcttgg catgttacct
      421 ggctcctctt ttaatgtggt gcgcgtcgct ccactcggcg accccattca tatcgaaacc
      481 cgtcgtgtga gcctggtatt acgcaaaaaa gatctggcct tattagaagt ggaagcggtt
      541 tcctgttaat acggtgataa caacaatgaa aaaattaacc ataggcttaa ttggtaatcc
      601 aaattctggc aagacaacct tatttaacca gctcactggc gcacgtcagc gtgtaggtaa
      661 ctgggctggc gttaccgtcg aacgtaaaga agggcaattc tccaccaccg atcatcaggt
      721 cacgctggtg gacctacccg gcacctattc tctgaccacc atctcatcgc agacctcgct
      781 cgatgagcaa atcgcctgtc actacatttt gagtggcgac gccgacctgc tgattaacgt
      841 ggtggatgcg tctaaccttg agcgtaacct gtacctgacg ctacaactgc tggaactcgg
      901 cattccctgc attgtggcac tgaacatgct cgacattgcc gagaagcaaa atattcgtat
      961 tgaaattgat gctctgtcgg cgcgtctggg ctgtccggtg atcccgctgg tttcaacccg
     1021 tggtcgcggt attgaagcgc tcaagctggc gattgatcgc tataaagcta acgagaatgt
     1081 ggaactggtg cattacgcac agccgctgct caacgaagca gattcactgg caaaagtgat
     1141 gccttccgac atcccgctga aacaacgtcg ctggctgggc ctgcaaatgc tggaaggcga
     1201 tatctacagc cgcgcctacg ccggtgaagc gtcgcagcat ctggatgccg ccctcgcccg
     1261 tctgcgtaat gagatggacg atccggcgct gcacattgcc gatgcgcgtt accagtgcat
     1321 tgctgccatc tgtgatgtgg taagcaacac cctgacggca gaacccagcc gtttcaccac
     1381 tgcggtagat aaaatcgtgc tcaaccgttt cctcggtctg ccgattttcc tctttgtgat
     1441 gtacctgatg ttcctgctgg ctatcaacat cggcggggcg ttacagccgc tgtttgacgt
     1501 cggctccgtg gcgctatttg tgcatggtat tcaatggatt ggctacacgc tccacttccc
     1561 ggactggctg actatcttcc tcgcccaggg cctgggtggc ggcattaaca ccgtgctgcc
     1621 actggtgccg cagattggca tgatgtacct gttcctctcc ttccttgagg actccgggta
     1681 tatggcgcgt gcggcgtttg tgatggaccg tctgatgcag gcgctgggct tgccggggaa
     1741 atcctttgtg ccgctgatcg tcggtttcgg ttgtaacgta ccgtcggtaa tgggtgcacg
     1801 tacgcttgat gcaccgcgtg aacgtctgat gaccatcatg atggcaccgt ttatgtcctg
     1861 cggcgcgcgt ctggctatct tcgcagtatt cgcggctgcc ttcttcgggc agaacggtgc
     1921 gctggcggtc ttctcgctgt atatgctggg tattgtgatg gcggtgctga ctggcctgat
     1981 gctcaagtac accatcatgc gcggtgaagc gacgccgttt gtcatggagt tgccggtcta
     2041 tcatgtacca cacgttaaaa gcctgattat ccagacctgg cagcgtctga aaggcttcgt
     2101 tctgcgtgct ggtaaagtga tcatcatcgt cagcattttc ctgagcgctt tcaacagctt
     2161 ctcgctgagc gggaaaatcg tcgataacat caacgactcg gcgctggcgt ccgtcagccg
     2221 ggtgatcacc ccggtcttca agccaattgg cgtgcatgaa gataactggc aggcaacggt
     2281 tggcctgttt acaggtgcca tggcgaaaga agtggtagtg ggtacgctca acaccctcta
     2341 caccgcagaa aatattcagg acgaagagtt caatccggca gagtttaacc tcggtgaaga
     2401 gctgttcagt gcgatagatg aaacctggca gagcctgaaa gacaccttca gccttagcgt
     2461 actgatgaac cccattgaag ccagcaaagg caacggcgaa atgggtaccg gggcgatggg
     2521 cgtgatggat cagaaattcg gtagcgcagc agcagcttac agctacctga ttttcgtcct
     2581 gctgtatgta ccatgtatct cggtgatggg agccatcgcc cgtgaatcaa gccgtggctg
     2641 gatgggcttc tccatcctgt gggggctgaa tatcgcttac tcgctggcaa cattgttcta
     2701 tcaggtcgcc agctacagtc agcacccaac ttacagcctg gtgtgcattc tggcggttat
     2761 cctgtttaac atcgtggtta tcggtctgct gcgccgcgcg cgtagccggg tggatatcga
     2821 actgctggca acccgcaagt cggtaagcag ttgctgcgca gccagcacca ccggtgattg
     2881 ccattaatgg cttcacttat tcaggtgcgc gatttgctgg cgttacgggg ccgtatggaa
     2941 gcggcccaga taagccagac attgaacact ccacagccaa tgattaacgc catgctgcaa
     3001 caactggaaa gtatgggcaa agccgtgcgg attcaggaag aacctgacgg ctgcctctct
     3061 ggcagttgta aaagctgccc ggaaggaaaa gcctgtctgc gcgagtggtg ggcgcttcgt
     3121 taaccttact ccatcgcctg ttttggaaag cccggtatgc gtctgcatcc gggctttttt
     3181 gcgtgcggct ttccataaaa atgcaactct tgcagcacgg cgtaagttcc tttgaaagca
     3241 tctcgcaggg atgaaaactc gctaatacac aggtgtggag tggcgcgtag agtcgcggca
     3301 ttcaaacaac aggtgaagga acgccatgag caaaaagcag agttccaccc cacacgatgc
     3361 gctgttcaaa ctctttttac gccaaccgga cacggctcgt gattttcttg cgtttcattt
     3421 accggcaccc attcacgcgc tttgtgatat gaaaaccctc aagctggagt cgagcagctt
     3481 tattgatgac gatctgcgtg aaagctattc cgatgtgctg tggtcggtga aaacggaaca
     3541 aggaccagga tacatctatt gtctgattga acatcaaagc acctcaaaca aactgatcgc
     3601 atttcgcatg atgcgttacg ctattgccgc aatgcaaaat caccttgatg ctggatacaa
     3661 aacgttgccg atggtggtgc cattgttgtt ttaccacggt attgaaagcc cctatcccta
     3721 ttcgctgtgt tggctggatt gtttcgccga tcccaaactg gcaaggcagc tttatgcctc
     3781 cgcatttccg ctgattgatg tcaccgtcat gcctgatgat gaaatcatgc agcaccgacg
     3841 tatggcgctg ctggagttaa ttcaaaaaca tattcgtcaa cgcgacctga tggggctagt
     3901 agagcaaatg ggctgcttat taagtagtgg atacgctaat gacagacaaa tcaaagggct
     3961 gtttaattac atactgcaaa ccggcgacgc ggtacgtttt aacgatttta tcgacggcgt
     4021 tgccgaacgt tcaccgaaac acaaggagag tttaatgaca attgcggaaa gattgcggca
     4081 ggagggggaa caatccaaag ccctgcatat agccaaaata atgcttgaat ccggagtccc
     4141 tcttacagac atcatgcgct ttaccggggt gtcagaagaa gagttggctg cggcgagcca
     4201 gtaaatttct gtctcgccat ttcaaaagtt gcctacaccc tctgcttcaa cgccaccagc
     4261 aggtgacaaa actcgaccgg atgcgaaata aacggcgcat gggccgcttt ggcgaagata
     4321 tatgatttgc tgcgaggcca gagtttatcc agcatcggca ccactttgcg cggcaccaga
     4381 ccatcgagat agccatacaa tcgcaaaaac ggcatgggca cgttttgcag cggctgacgg
     4441 agatcaaccg ttttcaggat ttccagcccg ccattaagca cgtcaacctc cggcatcggt
     4501 aacgccagaa cggttttctt caacgcccgc gcatcctggc gcgccgtttc agtccccatg
     4561 gtttgtaacg ccaggaaccg ctccactgta cgctgaaaat catcactgag ttgctgctga
     4621 aatcccgcca gcacgtccgg ttttatcccc ggccaatcgt cacgagcact aaaacaaggt
     4681 gacgacgcca cggtgaccag cgcctgaaca cgctcgggat gggttaacgc aatctggctt
     4741 gccaccagcc cgcccagact ccagcctaac caaatggctt tatcaggtgc ctgttgcagc
     4801 acggcttcgg ccatatcagc aagtgacagc gcaccaaatc cctggctgcg cccgaagccg
     4861 ggcagatcaa caaggtgcag cgtaaaatgc gagctaagtt cctcgtcaat gcaacgccac
     4921 acttcggcat tcagtcccca tccgtgcagc agcacaagat gaacattccc ctgacctttg
     4981 gtctgccacc agatgttatt catccgctat tgttctcttt tgacttacaa ggatgaacat
     5041 atgctaacag taccgggatt atgctggcta tgccgaatgc cgctggcgtt aggtcattgg
     5101 gggatttgtt cggtctgctc acgcgccgcc cgtacagata aaacgttatg cccacaatgt
     5161 ggattacccg ccacacactc acatcttccc tgcggtcgct gcctgcaaaa accaccgccc
     5221 tggcaaagac tggtcacggt tgccgactat gcgccgccgt taagtccgct tatccaccag
     5281 cttaaatttt cccggcgcag tgaaatcgcc agcgccctgt cacgtctgtt actattggaa
     5341 gtcttacacg ctcgtcgcac caccgggttg caattgccgg atcgcatcat cagcgttccg
     5401 ttatggcagc ggcgtcactg gcgtcgggga tttaatcaga gcgatttgct gtgtcagccg
     5461 ttatcacgct ggttgcactg ccgatgggat agcgaagccg tcacacgaac acgggccact
     5521 gcgacccagc attttctcag tgcccggcta cgcaagcgca acctgaaaaa tgcctttcgt
     5581 cttgaattgc ccgtgcaagg tcgccatatg gtgattgtgg atgatgtcgt taccaccgga
     5641 agtaccgtcg cagagattgc gcagttgctt ttacgcaatg gtgcggcgac tgtccaggtc
     5701 tggtgccttt gtcgaacctt gtagagcctc gatgataggc gtattataac caactaaaat
     5761 agtcaactat taggccatta ctatgatccg tatttccgat gctgcacaag cgcactttgc
     5821 caaactgctg gcaaaccagg aagaagggac acaaatccgc gtatttgtga ttaaccctgg
     5881 cacgcctaac gctgaatgtg gtgtttctta ttgtccgccg gatgccgtgg aagccaccga
     5941 cactgccctg aaatttgacc tgctgaccgc gtatgttgat gagttaagcg ctccttacct
     6001 ggaagatgca gagatcgatt ttgttaccga ccagttgggt tctcagctaa cactgaaagc
     6061 gcctaacgcc aaaatgcgta aagtggcaga cgatgcacca ctgatggagc gcgtggagta
     6121 tatgctgcag tcgcagatca acccacagct tgctggtcac ggtggccgcg tttcactgat
     6181 ggaaatcacc gaagacggtt acgccattct gcaatttggc ggcggctgta acggttgttc
     6241 catggtcgat gtgacgctga aagaagggat cgagaagcag ctgctaaacg aattcccgga
     6301 gctgaaaggt gtgcgcgatc tcaccgaaca ccagcgcggc gaacactcct actactaagt
     6361 tatcccctct tttgtagatt gcccgatgcg acgctaaagc gtcatttcgg gcctacgttg
     6421 aacatgtgcc agacgttggc gcagcattgc tttggcaaat ccctcccttc gtttctccgc
     6481 gataatatga ccaacctctc ataatttaaa tttactccgc tctggtgatt ctcaaacgcc
     6541 agatgttacc ggtatcattc acatgggtac caaacatact cctgacatct gactacaata
     6601 attagtttta gtgggtatca gtcgtggtgc cgcaatatct ctgttcccga ttgggataat
     6661 tagagtttgt cgtcagaaaa ttgacgttac ccataacaaa tgaaaggcca ggtaaatcat
     6721 gccattagtc attgttgcta tcggtgtaat cttgttgttg ctcctgatga tccgtttcaa
     6781 aatgaacggc ttcatcgctc tcgtcctcgt ggcgcttgct gttggattaa tgcaagggat
     6841 gccgctggat aaagttattg gctccatcaa agccggtgtc ggcgggacgc tcggtagcct
     6901 tgccctgatc atgggttttg gcgcgatgct gggcaaaatg ctggcagact gcggtggcgc
     6961 acaacgtatc gccaccaccc tgattgccaa atttggtaaa aaacacatcc agtgggcggt
     7021 ggtactgacc ggttttaccg ttggttttgc cctgttctat gaagtgggct ttgtgctgat
     7081 gctgccgctg gtgtttacca tcgcggcttc tgcgaatatt ccactgctgt atgttggtgt
     7141 accaatggca gctgcactgt ctgtgaccca cggcttcctg ccaccgcatc cgggtccgac
     7201 tgcgattgcc accattttca atgccgacat gggtaaaacc ctgctgtacg gtactattct
     7261 ggcaatcccg accgtgattc tcgccggtcc ggtttacgct cgcgtgttga aaggtataga
     7321 taagccgatc cctgaaggtc tgtacagcgc gaaaaccttc agcgaagaag agatgccgag
     7381 ctttggcgtc agcgtctgga cctctctggt gccggtagtg ctgatggcga tgcgtgcgat
     7441 tgccgaaatg atcctgccga aaggtcacgc tttcctgccg gtagcggagt tcctcggtga
     7501 cccggtaatg gctacgctga ttgccgtgct gattgcgatg ttcacctttg gtctgaaccg
     7561 tggtcgttca atggatcaga ttaacgacac gctggtttct tccatcaaaa tcattgcgat
     7621 gatgctgttg atcatcggtg gtggcggtgc gttcaagcag gtgctggtag acagcggcgt
     7681 ggacaaatac attgcttcca tgatgcacga aaccaacatt tctccgctgc tgatggcctg
     7741 gtcgattgct gccgtactgc gtatcgcgct gggttccgca accgttgcgg caatcactgc
     7801 gggtggtatc gcggcaccgc tgattgcaac gacgggtgtt agcccggagc tgatggttat
     7861 tgcggtgggt tccggtagtg tgattttctc tcatgtgaac gatccgggct tctggctgtt
     7921 caaagagtac tttaacctga ctatcggcga gaccatcaaa tcctggtcga tgctggaaac
     7981 cattatctcg gtgtgcggtc tggtaggctg tctgctgctg aatatggtga tttgataaca
     8041 ctgactgccg gatgcatcgc atccggcatc aaccgcactc tactgcttct tcgctgcagc
     8101 tctgcgccgt ctgtccaaat ccttcagcaa cttattcacg ccatcatcgg caaacatcgt
     8161 ctcaagcgtt gcggaaagct tgcgtcgcca gtttttatac tggtaactgg tgccaggaat
     8221 attcaccggt tcggccatat ccagccagtc ttccggctgt agtcctaaca gagcactgtt
     8281 actgtcggca atgtagcgct gcaaaccacg attaagcgtc ggcgtcatcg acatcaacga
     8341 tgccttatgc ccggcacgtt ttggcagaca accatattta tgcagtgcat ccagcagccc
     8401 ttgcttcgcc agttcgcgat cctgatacag accgcgcagt accacttcat ccggatacag
     8461 ccccagggtt ttgcccaacg ttagatcccc gctctcccag taaccgcgca gcgtaggcag
     8521 gtcatgtgtc gccgcaaccg ccatcgactg ctccggatac gctttcggtg cacggaacgt
     8581 cttctcgtgg tcgttttcga aatagagcac tttgtaggag tacacaccgc tgctgcgcag
     8641 cttaccgaca atctctaccg gtacggtacc gagatcttca ccaatcacca tacagcgatg
     8701 acgtttactt tcgagtgcca gaatcgagag cagatcatcc accggatagt gaacatacgc
     8761 gccctgatct gccgtctcgc catacggtat ccaccacaaa cgcagcatcg acatcacatg
     8821 gtcaattcgt aatgcgccgc agttttgcat attggcacgc aacagctcga taaacggttc
     8881 ataggcacgc gcggtgatga tatgcgggtc cattggcggt aatccccagt tctgccccaa
     8941 cgggccgagg atatccggcg gcgcgccaac cgacgctttc aggcaatata gttcacggtc
     9001 acaccaggtt tccgccccac cttccgctac gccaaccgcc agatcacgat acaagccaat
     9061 cggcatttca tagccctggc ttatctccca gcaggcggca aactggctgt aagccagcca
     9121 ctgcaaccag agataaaaat cgacgtcatc acgatgttct tcgcagaact gacgcacttc
     9181 tggtgaatcc acgttctgat acatctctgg ccatgcaggc cagccccagc gcatttcgtc
     9241 ctctttcact tgctgggcat gtagcgcatc aaaggctgcc tgccagaaca ggctgtcgcc
     9301 ctgctctgca acaaactggc gaaacgcggt catctgctca tcatcacgtt gcgcgaaacc
     9361 tttccacgcc attcgtaatg ctgtcatttt tagggcggta accgtggagt aatcgaccca
     9421 gtcggcatcg cgcgcctgtt gcagcgtctg ttgcgtggtc ggcaactgcc accaggcctg
     9481 agcctcttcg ctaagatgga aatcttcaac ggcgttaacg tcgatataaa tcacattcag
     9541 ccaacggcga gaagacggac tgtatgggct ggcactctcc ggatttgccg gatagagcgc
     9601 atgaatcggg ttcaggccga tgaacgaccc gccacgtttt gccacatcca ccagcatcgc
     9661 tttgagatcg ccaaaatccc caatacccca gtttttttcc gatcgcagcg tataaagctg
     9721 aacgcaggca ccccacagct tttgtttatt cagcaacgcc tgcggttcgt aacagcgttt
     9781 cggggcgaca atcacccggc aatgcgcgcg ctggtcgtcc tgggtgagtg tcagcgtgtg
     9841 ataaccttcc ggcagcttcg tcggtagatt gaacgctttg ccccccgtta catggccttt
     9901 gtactgtgtt ccttcttcgg tggtcagcag ccagctatat tcgccgctgc cctccaccac
     9961 catcggcatt tttttgccgc tggtataaac catgacattc gggactggcg ttaccgccac
    10021 tttcgtggcg gtacgttgat gcatcgcgtc aagcaaacgc cgtttggttt cggcgctaat
    10081 cgactgcggt ttaccgtggg cattgatgta attggggcta atccccgccg ccagcgcggc
    10141 attatccaga cgtttgcttt ccatcgagct tccttagcgt tttgcctgcc agatacgagc
    10201 ctgataatcg cgaatagagc gatccgagct aaacataccg cagcgggcgg tattgaggat
    10261 cgccgcgcga gtccaggcct cttggtcgcg gtacagcaca tccacctgct tttgtgcctc
    10321 aacataggct gcgaaatccg ccatcaccag atacggatcg ccgccttgtt tgccgatact
    10381 gtgcagcatc tggtcgaagg catgcttatc gccgtcgctg tatttaccgc tttccagctc
    10441 tttcaatact gcgtccagca ccttatcttt cttccgccat ttcaccgggt cgtagccttt
    10501 ggccagaatt gccttcactt gttccacggt atgaccaaaa ataaagatat tttcttcacc
    10561 gactttctcg gcgatttcaa cgttcgcacc atccagcgta ccgacagtaa gcgcaccatt
    10621 gagcgccagt ttcatattgc cggtaccgga agcttcttta cctgcagtcg aaatttgttc
    10681 ggagatatcc gccgccggga tcagtttttc cgccgccgaa acgcaataat cctgcaggaa
    10741 caccaccttc aacttatcgc caaccagtgg atcgttgttg atcacgtcag ccactttgtt
    10801 gatcgcaaag ataatattct tcgccaggta gtagcccggt gccgctttcg cgccgaagag
    10861 gaagacgcgc ggtacgcgat cagcctgcgg gttttcacga atttctttgt acaacgccag
    10921 aatatgcagc agattcaggt gctggcgttt gtactcatgc agacgtttaa tctgaatatc
    10981 gaaaatcgcc tgtggattga tctcaatacc ggtacgaact ttcacaaact ccgccagacg
    11041 gactttattc gcctgcttga tctcgcgata ttgctgacgg aatttcgcat catcagcgaa
    11101 tttttccaga ttgatcagct gatcgagatc gttagcccac tctttttgca gtaatttatc
    11161 caacagagcc gccagtgcag ggttgcactg tttgatccag cgacgtgggg taataccgtt
    11221 ggtgacgtta tggaatttgt tcggccatag ctggtgatat tccgggaaca gatctttcac
    11281 caccagatcc gagtgcagcg ccgcaacacc gttcaccgcg aaaccgccaa ccacacacag
    11341 gttcgccata tgcacttgtt tatcgtgcac caccgccagt ttggcccaca ctttttcatc
    11401 gcccggccag gttttctcca ccagcgtttt aaagcgagta ttaatttcgt taataatctg
    11461 catatggcgc ggcagtaagc ctttcaccag tttcacatcc cagcgttcca gcgcttctgg
    11521 catcagggta tggttggtgt aagcgaaagt tttgctggta atggcccagg cgtcatccca
    11581 gctcatctgg tgctcatcga tcagcacgcg cagcagttct ggaatcgcga tagttgggtg
    11641 ggtatcgttc agctgaataa cttcataatc cgccagttcg tgcagtttac gccccgccag
    11701 atgatggcga cgcaaaatat ccgctaccga acaggcacac tggaagtact gctgcatcaa
    11761 gcgcagcttt ttaccggcag tatggttgtc gtttggatag agaactttgg tcagtttttc
    11821 cgcattgatg ccctgctgtt cggcacgcag gaaatcaccg tcgttaaatt tagtcagatc
    11881 aaacggatgc gcgtgcgtcg cctgccacag acgcagcggc tgcgccacgc cattacgata
    11941 gccgacaacg gggagatccc acgcttgacc ggtaatggta aactccggct cccagcgtcc
    12001 gtctttcgtc actttaccgc caatccctac ctgcacatcc agtgcttcgt tgtggcggaa
    12061 ccacgggtag ttactgcgat gccagtcatc cggcgcttca acctgtttgc catcgacaaa
    12121 agactggcgg aacaaaccat attgatagtt cagaccgtaa cccgtcgcag actgaccgat
    12181 agttgccatt gagtcgagga agcacgccgc cagacgtccc agaccaccgt tacccagcgc
    12241 cgggtcgatc tcttcttcca gcaggtccgt cagattgatg tcataagcct tcaacgaatc
    12301 ctgtacttcc tgataccagc cgagattcaa caggttgttg cccgtcaggc gaccaatcaa
    12361 aaactccatt gagatgtagt taacatgtcg ctgattcgcc accggcttgg cgaatggctg
    12421 agcacgcagc atttcggcca gtgcttcact cactgctagc caccactggc gaggagtcat
    12481 ttcagccgca gaatttaagc cataacgctg ccactgacgt gaaagcgctt cctgaaattg
    12541 cttatcgtta aaaataggtt gtgacatagg agttccactt ttcttagatt ttcaacacaa
    12601 cgttatcgct agtttgccag gctcgatgtt gaccttcctc atcctgcggg ggattaggca
    12661 gggaggagtt gcggggatga gcaaggaaat gtgatctcaa ccacttaaag ctagtgcaaa
    12721 ccacaggatt agcagcaaat caatgcaata cagcgcagaa aatctgtatc taagtgcaaa
    12781 aaatggccgt tgcgtatttt caaaaagcgg aaggtaactc tataaattaa gtaaaggagt
    12841 gaaacagttt cacaagtaaa atatccagtg tgctccatct cattcttaat agatttatta
    12901 agatcatctt tttagatggc actttcatca ggaatgaaga agaaaccctt gcttaaatga
    12961 atctgatgaa cataagggaa accagtattc acgctggatc agcgtcgttt taggtgagtt
    13021 gttaataaag atttggaatt gtgacacagt gcaaattcag acacataaaa aaacgtcatc
    13081 gcttgcatta gaaaggtttc tggccgacct tataaccatt aattacgaag cgcaaaaaaa
    13141 ataatatttc ctcattttcc acagtgaagt gattaactat gctgattccg tcaaaactaa
    13201 gtcgtccggt tcgactcgac cataccgtgg ttcgtgagcg cctgctggct aaactttccg
    13261 gcgcgaacaa cttccggctg gcgctgatca cgagtcctgc gggctacgga aagaccaccc
    13321 tcatttccca gtgggcggca ggcaaaaacg atatcggctg gtactcgctg gatgaaggtg
    13381 ataaccagca agagcgtttc gccagctatc tcattgccac cgtgcagcag gcaaccaacg
    13441 gtcactgtgc gatatgtgag acgatggcgc aaaaacggca atatgccagc ctgacgtcac
    13501 tcttcgccca gcttttcatt gagctggcgg aatggcatag cccactttat ctggtcatcg
    13561 atgactatca tctgatcact aatccagtga tccacgagtc aatgcgcttc tttattcgcc
    13621 atcaaccaga aaatctcacc ctggtggtgt tgtcacgcaa ccttccgcaa ctgggcattg
    13681 ccaatctgcg tgttcgtgac caactgctgg aaattggcag tcagcaactg gcatttaccc
    13741 atcaggaagc gaagcagttt tttgattgcc gtctgtcatc gccgattgaa gccgcagaaa
    13801 gcagtcggat ttgcgatgac gtttccggtt gggcgacggc actacagcta atcgccctct
    13861 ccgcccggca gaatacccac tcagcccata agtcggcacg ccgcctggcg ggaatcaatg
    13921 ccagccatct ttcggattat ctggtcgatg aggttttgga taacgtcgat ctcgcaacgc
    13981 gccattttct gttgaaaagc gccattttgc gctcaatgaa cgatgcgctc atcacccgtg
    14041 tgaccggcga agaaaacggg caaatgcgtc tcgaagagat tgagcgtcag gggctgtttt
    14101 tacagcggat ggatgatacc ggcgagtggt tctgctatca cccgctgttt ggcaacttcc
    14161 tgcgccagcg ctgccagtgg gaactggcgg cggagctgcc ggaaatccac cgtgccgccg
    14221 cagaaagctg gatggcccag ggatttccca gcgaagcgat tcatcatgcg ctggcggcag
    14281 gcgatgcgct gatgctgcgc gatattctgc ttaatcacgc ctggagtttg ttcaaccata
    14341 gcgaactgtc gctgctggaa gagtcgctta aggccctgcc gtgggacagt ttgctggaaa
    14401 atccgcagtt agtgttattg caggcgtggc taatgcaaag ccaacatcgc tatggcgaag
    14461 ttaacaccct gctagcccgt gctgaacatg aaatcaagga catcagagaa ggcaccatgc
    14521 acgcagaatt taacgctctg cgcgcccagg tggcgattaa cgatggtaat ccggatgaag
    14581 cggaacggct ggcaaaactg gcactggaag agctgccacc gggctggttc tatagccgca
    14641 ttgtggcaac ctcggtgctg ggtgaagtgc tgcactgcaa aggcgaattg acccgctcac
    14701 tggcgctaat gcagcaaacc gaacagatgg cacgccagca cgacgtctgg cactacgcct
    14761 tatggagttt aatccagcaa agtgaaattc tgtttgccca agggttcctg caaaccgcgt
    14821 gggaaacaca ggaaaaagcg ttccagctga tcaacgagca gcatctggaa cagctgccga
    14881 tgcatgagtt tctggtgcgc atccgagcac aactgttatg ggcctgggca cggctggatg
    14941 aagccgaagc gtcggcgcgt agcgggattg aagtcttgtc gtcttatcag ccacagcaac
    15001 agcttcagtg cctggcaatg ttgattcaat gctcgctggc ccgtggtgat ttagataacg
    15061 cccgtagcca gctgaaccgt ctggaaaacc tgctggggaa tggcaaatat cacagcgact
    15121 ggatctctaa cgccaacaaa gtccgggtga tttactggca aatgaccggc gataaagccg
    15181 ccgctgccaa ctggttgcgt catacggcta aaccggagtt tgcgaacaac cacttcctgc
    15241 aaggtcaatg gcgcaacatt gcccgcgcac aaatcttgct gggcgagttt gaacctgcgg
    15301 aaattgttct cgaagaactc aatgaaaatg cccgcagtct gcggttgatg agcgatctca
    15361 accgtaacct gttgctgctt aatcaactgt actggcaggc cggacgtaaa agtgacgccc
    15421 agcgcgtgtt gctggacgca ttaaaactgg cgaatcgcac cggatttatc agtcattttg
    15481 tcatcgaagg cgaagcgatg gcgcaacaac tgcgccagct gattcaactc aatacgctgc
    15541 cggaactgga acagcatcgc gcgcagcgta ttctgcgaga aatcaatcaa catcatcggc
    15601 ataaattcgc ccatttcgat gagaatttcg ttgaacgtct gctaaatcat ccggaagtgc
    15661 cagaactgat ccgcaccagc ccgttgaccc aacgtgaatg gcaggtcctg gggctgatct
    15721 actccggtta cagcaatgag caaattgcgg gcgagctgga agtggcggca accaccatca
    15781 agacgcatat ccgcaatctg taccaaaaac tcggcgtcgc ccaccgtcag gccgcggtac
    15841 aacacgcgca gaaactgctg aagatgatgg gatatggggt gtgagtttag ccggataatg
    15901 cattggatcc ggtttacatc tttacatcat tcaatactca cccgcgttac gccatctatt
    15961 tctatcaaac caaaccgcac cggcaagaaa cgctccacca cggcgatatt ggtcagcaaa
    16021 tggcatgaag gatgggcgac cgtaaattct cccgcgcccg ccagcgccat cggtagcacc
    16081 agctggtcgg cgagatattc ccccactgcc gccgggcttg ccaggtagcg tttcacctct
    16141 ttcactaact gcgcggctac cacctcggca ctgacgcgct tttcaccgac gacgaaaaag
    16201 cgttcagtga tattttcact ttcgacttcc agcgagacgg tattacccgg cccctggtcg
    16261 cgcggcaggt tatgaatatt ctgttcatgc agggaaaaac tccccgccag tgtagcgatt
    16321 tcacgctcag caacatggcg cggcacacca gctaatagaa cttctccacg catctgcaca
    16381 atgttcccgc gctcgccaag ttgcaaggtg ttaaacgatg ccacgggcga gacttccgtt
    16441 gccaccacgc cgcctccggc aggataaaaa ccgtgacgta acagcgtggt ttgctgatga
    16501 attcctattt tcgccagcag cggctccagc acccggcgga taaaatccgc aggcggcgcc
    16561 gacgggttat cggtgcctcc gctcacttca acacgcgaag gtccatcggc aaaccacagc
    16621 gcgggcagca ccgtttgcag caccagcgta cagcttccgg cactaccgat agcaaagcgg
    16681 tactcgccgc cgcgcacggc gccaggccgg aagaccagac gctgcgaccc cagctccgcg
    16741 ccttccaccg ttgccctaca aatttccgca gccgctttta ccgcggtcag atgctggcgc
    16801 aacagccccg gtttcgcccg cccggcacga atgctggtga tggtaaatgg ctggccggtt
    16861 atcatcgaca ggctcagcgc cgagcgcaga atctgcccgc caccttcgcc ctgtgcgcca
    16921 tccagcgcaa tcatcctttt catcatttat ccttttacgc acaccacctg acgcagggta
    16981 tagataactt ccaccagatc gctttgtgcc gtcatcaccg catcaatatc tttatacgcc
    17041 atcgggattt cgtcgatcac ttcggcatct ttacggcatt ccacatgcgc ggtggcacga
    17101 atttgatctt ccacgctgaa cagttttttc gctttagttc ggctcattac ccgcccggca
    17161 ccgtggctgc acgaacagaa cgactcttca tttcccagcc cacggacgat aaagcttttt
    17221 gctcccatcg aaccgggaat aattccatat tgaccagcac gcgcagacac cgcgccttta
    17281 cgcgtcacgt agatctcttc accaaagtgc tgttcttttt gcacatagtt gtggtgacag
    17341 ttgatctctt ccatcgccag cgtttgtggc tgtctgaccg ttttctgcgt aatgctctgc
    17401 aatgccgtta ccacgttttc catcatcaca tcgcggttaa ggctggcaaa aagctgcgcc
    17461 caggccacgg ctttcaggta atcatcaaag tattccgtac cttccataaa gtacgccaga
    17521 tcacgcgacg gcaacgtctc aagcgtttcc tgcatctctt tttgtgccag atcgataaag
    17581 taagtcccga tggcgttacc aattccgcgt gaaccggagt gcagcataat ccacacctgg
    17641 tccgactcat caaggcagat tttaataaag tggttaccgg ttcccagcgt tcccaggtgt
    17701 ttatagttat tggtattcag gaaacgggga tatttttgcg ttaaccactg ataaccggct
    17761 tcaagctcag cccatttcgc atcgacgttg acaggcgggt tttcccatgc gcctttatca
    17821 cgtttacaac gcccggtagt acgcccgtgc ggcacggccg tttcaatcgc ctgacgcagc
    17881 tctgccaggt tttcaggcag gtcttccgcc gttaacgcgg tacgcagcgc gttcattcca
    17941 cagccaatat ccacgcccac cgccgccgga ataatcgccc ctttggtcgg gatcacgcta
    18001 ccaatggtgg aatctttacc caggtgtaca tcaggcatta ccgcaatatg tttgaaaata
    18061 aacggcatct tcgccgtatt aataagttgc tgacgcgcat cggcttctac cggcacgcct
    18121 ttggtccaca tttttaccgg ggcattttca gtggtcagta attcgtaatt cattttgttt
    18181 ttctcttttc gttgtttgct gtcctgataa ttgcaaccgt cgtgccagaa aattaaataa
    18241 gtaaattaat tttttaattc attgttttta aaaagattat atctttatgt ccgtaaccgg
    18301 agatttcccg caaagccgat ttaccgataa tgaaatatcg tcttttataa ggatatctaa
    18361 gatgcgtaaa acagtagctt ttggctttgt cggaacggtg ctggattatg ccgggcgcgg
    18421 cagtcagcgc tggtcaaaat ggcatccgac actctgttta tgccagcaag aatcgttggt
    18481 catcgatcga ctggaattat tgcatgacgc ccgctcgtgc tcgctatttg aaacgcttaa
    18541 acgcgatatc gccagcgttt cgccagaaac agaagtggtg agcattgaga ttgaactgca
    18601 taacccgtgg gatttcgaag aggtttacgc ctgcctgcat gatttcgccc gtggttacaa
    18661 gtttcagcca gaaaaagaag actatttaat tcacatcacc accggcaccc acgtcgcgca
    18721 gatttgctgg tttctgctgg cggaagcgcg ttatctaccc gcccggttga tacaaacttc
    18781 accaccgcgc aaaaaagaac aaccgcgcgg tgccggtgaa gtgacgatta tcgatctcga
    18841 tctaagccgt tataacgcca tcgccagccg ctttgccgag gaacgccagc aaacgcttga
    18901 ttttcttaag tccggcattg ccacgcgtaa cccccacttc aaccgcatga ttgagcagat
    18961 tgaaaaagtg gcgattaaat cccgcgcacc gatcctgctt aacggcccaa ccggtgcggg
    19021 aaagtcattt ctggcgcgac gtatatttga attaaaacag gcgcggcatc agtttagcgg
    19081 cgcgtttgtg gaagtgaact gcgccaccct gcgcggcgat accgccatgt cgacgctgtt
    19141 tggtcatgtg aaaggcgcgt ttaccggggc gcgggaatct cgtgaaggtt tattacgcag
    19201 cgccaacggc ggaatgttgt tttttgatga gattggcgaa ctgggcgcag acgaacaggc
    19261 aatgctgcta aaagccattg aagagaaaac cttttacccg tttggcagcg atcgccaggt
    19321 gagcagtgat tttcagctta tcgccggaac ggtgcgcgat ttgcgccagc tggttgccga
    19381 aggcaaattt cgcgaagatc tgtacgcgcg gatcaatctc tggaccttca ccctgccggg
    19441 tctacgccag cgccaggaag atattgaacc gaaccttgat tatgaagtgg agcgccacgc
    19501 cacactcact ggcgacagcg tgcgttttaa caccgaagcg cggcgcgcct ggttggcttt
    19561 tgcgacctct ccccaggcaa catggcgcgg taactttcgc gaactttctg ccagcgtcac
    19621 gcggatggcc acctttgcca ctagcggacg catcactctg gacgtggttg aagatgagat
    19681 aaaccgtctg cgctataact ggcaggagag ccgcccctcc gcgcttacgg cgttgctggg
    19741 cgcagaggca gaaaacatcg atctcttcga ccgtatgcaa ctggaacacg ttatcgctat
    19801 ctgccgccag gcaaagtcgc tttctgcaac cggacgacag ctttttgatg tttcgcgcca
    19861 gggaaaagcc agcgtcaatg acgcggatcg gctacgcaaa tacctggcgc gttttggtct
    19921 gacgtgggaa gccgtgcagg atcagcacag ctccagttga atatgatggt ccgtcagcac
    19981 ctgcattacg cttactggcg gcggggcgtc ggtgtagacg gcatctacca tgctgatgct
    20041 gcccatattg accatcgcgt tacggccaaa tttcgagtga tcgacaacca gcataacgtg
    20101 gcgcgagttc tcaataatgg cgcgcttggt gcgaacttcg tggtaatcga actccagcag
    20161 cgagccgtcg ctatcgatgc cgcttatccc cagaatgccg aaatcaaggc ggaactggga
    20221 gataaaatcg agcgtcgctt cgccaatgat cccgccatcg cggctgcgta attcgccacc
    20281 agcgagaata atgcggaaat cttcttttac catcaacgtg ttagcaacat tgagattgtt
    20341 ggtgacaata cgcaaattgc tgtgattaag cagcgcgtgc gccaccgctt ccggcgtggt
    20401 gccgatatcg ataaacagtg tcgagccgtt ggggatttgc tccgccactt tgcgggcaat
    20461 cctctctttt tcttcggtct gggtggcttt gcgatcgtgc cacggcgtgt taaccgaact
    20521 ggaaggcagc gccgcaccgc catggtgacg caggatcagg ttttgctccg ccagctcatt
    20581 gaggtcgcgg cgaatagtct gcgggctgac ggagaaatgc tctaccagct cttcagtact
    20641 gacataaccc tgctgtttaa ccagttcgat aataccgttg tgacgttgtg tttgtttcat
    20701 ttataaatcc ctggaattat tttcgttttc gcgcattgag cgaatcaaca aaagccatcg
    20761 ctaaacccac ggctaacccg gcgatgtgtg ctccgttcgc catcgacatc ccaaacaaat
    20821 caaaccatcc ggcgataatc cagatcagcg caaagataat taacccacgt tgcaggtaaa
    20881 tgccactttg cggatcgcgc tcaccacgta gccagacgta gcccatcagc gcatacacca
    20941 cgccagaaag cccgccaaac cacggcccgc tgaatttttg ctgcacatag ccgcttaaca
    21001 gggcactaat gagagtaata acaattagct taccgctacc gaggcgtttt tccaccgcac
    21061 cgccgagata ccaccaccag agcaggttaa agaggatatg catcagcgag aagtgcatta
    21121 acgcgtgggt gaagtaacgc cagaactcaa atttcagtgt tggatcgaat ggccaggcca
    21181 gccataacat cacttcctga tcgccgagaa tttgcatggc gataaacacc accacgcagg
    21241 cgatcatcac cacccaggtt accggacctg cgcgttcacg caaggcagca aagaaaggat
    21301 aacggcgata atgcagacca ctgccggtat ggcccgcctg ccagctggcc gccagataac
    21361 gcggatctgc cgggttttcg agaaaacgcg ccagctccgc ccgcacgcgc tcggcctggg
    21421 actcatccgc cagccagaca tcgctttggt tatgttgttg aatcgtaagg ataacaccct
    21481 gcgtcgccat gtaatcaaca aacgcctgcg ccacgcgggg gttagcaaaa gaggtaatca
    21541 tcaacatcgt tgctgtcgct tattccacac aaaaggggac agtataaagc gttacgcgcc
    21601 gtacgccacc tctgcgggaa actgacgctg ccaggcttca aaaccgccgt caatgctata
    21661 gaccacatcg tagccctgtt gcagcagata ctgcgccgcg cctttgctgc tattgccgtg
    21721 ataacacatc accatcaccg gagtgtcaaa gtcgttatca cgcataaacg cgcccagcgt
    21781 gtcgttggtt aaatggaaag cctgcaccgc atgtcccatt gcgaaactct gtggatcgcg
    21841 aatatcgacc agcaccgcct ctttttcctg caacttctgg tgcgcgtcgg caacgttaat
    21901 acattcgaac agatccatgc gtctctcttt ctttacaaac aagtgggcaa atttaccgca
    21961 cagtttacgt cgaagcggca gataaacgcc ataatgttat acatatcact ctaaaatgtt
    22021 ttttcaatgt tacctaaagc gcgattcttt gctaatatgt tcgataacga acatttatga
    22081 gctttaacga aagtgaatga gggcagcatg gaaaccaaag atctgattgt gataggtggc
    22141 ggcatcaatg gtgctggtat cgcggcagac gccgctggac gcggtttatc cgtgctgatg
    22201 ctggaggcgc aggatctcgc ttgcgcgacc tcttccgcca gttcaaaact cattcacggt
    22261 ggcctgcgct accttgagca ctatgaattc cgcctggtca gcgaggcgct ggctgaacgt
    22321 gaagtgctgc tgaaaatggc tccgcatatc gccttcccaa tgcgttttcg cctgccacat
    22381 cgtccgcatc tgcgcccggc gtggatgatt cggattggtc tgtttatgta cgatcatctg
    22441 ggtaaacgca ccagcctgcc gggatcaacc ggtttgcgtt ttggcgcaaa ctcagtgtta
    22501 aaaccggaaa ttaagcgcgg attcgaatat tctgactgtt gggtagacga cgcccgtctg
    22561 gtactcgcca acgcccagat ggtggtgcgt aaaggcggcg aagtgcttac tcggactcgc
    22621 gccacctctg ctcgccgcga aaacggcctg tggattgtgg aagcggaaga tatcgatacc
    22681 ggcaaaaaat atagctggca agcgcgcggc ctggttaacg ccaccggccc gtgggtgaaa
    22741 cagttcttcg acgaggggat gcatctgcct tcgccttatg gcattcgcct gatcaaaggc
    22801 agccatattg tggtgccgcg tgtgcatacc cagaagcagg cctacattct gcaaaacgaa
    22861 gataaacgta ttgtgttcgt gatcccgtgg atggacgaat tttccatcat cggcaccacc
    22921 gacgtagagt ataaaggcga tccgaaagcg gtgaagattg aagagagtga aatcaactat
    22981 ctgctgaaag tgtataacgc gcactttaaa aaacagctta gccgtgacga tatcgtctgg
    23041 acctactccg gtgtgcgtcc gctgtgtgat gatgagtccg actcgccgca ggctattacc
    23101 cgtgattaca cccttgatat ccatgatgaa aacggcaaag caccgctgct gtcggtattc
    23161 ggcggtaagc tgaccaccta ccgaaaactg gcagaacatg cgctggaaaa actgacgccg
    23221 tattatcagg gtattggccc ggcgtggacg aaagagagcg tgctgccggg tggtgccatt
    23281 gaaggcgacc gcgacgatta cgcagctcgt ctgcgccgtc gctatccatt cctgactgaa
    23341 tcgctggcgc gtcattacgc acgcacttac ggcagcaaca gcgagctgct gctcggcaat
    23401 gcgggggcga taagcgacct cggggaggat ttcggtcatg agttctacga agcggaactg
    23461 aaatacctgg tggatcacga atgggtccgc cgcaccgacg atgccctttg gcgtcgcaca
    23521 aaacaaggca tgtggctgaa tgcggatcaa caatctcgtg tgagtcagtg gctggtggaa
    23581 tatacgcagc agaagttgtc gctggcgtcg taaggatgat gcccggttga agtgcaaccg
    23641 ggctatttgg attccttaga ctattcattg taaataattg aataacggcc cctgagctaa
    23701 aatcgccaaa cttaagcacg ttacccaatc gccccacttc ttcctctggt ttctattttt
    23761 tctgcaccaa tggcaataat atcccaatgc aaaaccaagc tgtgcactaa tcgggccgac
    23821 aaaatcagtc caaggctgcg gccaaaaagg ggaaaaattc aggggaggcc agacaaacgt
    23881 cagaaagaaa tttcggatat tttccagcaa cgctgatttc tctggagaaa tataaagaat
    23941 gaaattcgag agaattaacc agaaatagac cggcgaaaag accagccagc aatgcagtct
    24001 gttttttaat tcaggaggcg ttctgcggga gaattgccaa ccgatgccag ccattacac
//
LOCUS       DADMJB010000048        23946 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.048, whole genome shotgun sequence.
ACCESSION   DADMJB010000048 DADMJB010000000
VERSION     DADMJB010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 23946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23946
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.048"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            353..1711
                     /locus_tag="JN078_001730"
     CDS             353..1711
                     /locus_tag="JN078_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000823236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HAY9040970.1"
                     /translation="MKRKIIPVLIGCTLSFSALAAQPTAERYVVSFPEGTHVNYAGAF
                     ASAFPNGLPVGIGSGLLFTGKQGDALTFATITDRGPNADSPKEGKNETKIFVTPDFAP
                     LLMTIRVQNGKAEAIDPRPLHDDKGAINGLPLASDVIGSTNEVAFSDTLHRLKGDNHG
                     LDTEGITPDGKGGYWLCDEYGPFLINIDSKGKILAIHGPQAAEGEKAIAGGLPNILKW
                     RQANRGFEGLTRMPDGRIIVAVQSTLDIDAKSKKKALFTRLVSFDPASGKTAMYGYPI
                     DSAAYSKNSDAKIGDIVALDNQHILLIEQGRDKNNRMRNLIYEVDLNKASDLSGFDKP
                     GEYPEFDDEKTLSQRGITLAQKTQVVDLRSLGWQQEKAEGLALIDSKTLAVANDNDFG
                     VKVAMQHPVEGKTFKDYRVNAEGKLTLDDKQVETTLRVKPLEKPESDSELWIVTLPEA
                     LK"
     gene            complement(1950..3335)
                     /locus_tag="JN078_001731"
                     /pseudo
     CDS             complement(1950..3335)
                     /locus_tag="JN078_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000998048.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
     gene            complement(3385..3732)
                     /gene="tnpB"
                     /locus_tag="JN078_001732"
     CDS             complement(3385..3732)
                     /gene="tnpB"
                     /locus_tag="JN078_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019104956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HAY9040971.1"
                     /translation="MIPLPSGTKIWLVAGITDMRNGFNGLAAKAQTALKDDPMSGHVF
                     IFRGRSGSQVKLLWSTGDGLCLLTKRLERGRFAWPSARDGKVFLTQAQLAMLLEGIDW
                     RQPKRLLTSLTML"
     gene            complement(3729..4109)
                     /locus_tag="JN078_001733"
     CDS             complement(3729..4109)
                     /locus_tag="JN078_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000603938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence hypothetical
                     protein"
                     /protein_id="HAY9040972.1"
                     /translation="MQKNVTPGRRKGCPNYPPEFKQQLVAATCEPGISISKLALENGI
                     NANLLFKWRQQWREGKLLLPSSESPQLLPVTLDAAAEQPESLAEDPETLSISCEVTFR
                     HGTLRFNGNVSEKLLTLLIQELKR"
     gene            complement(4464..4898)
                     /locus_tag="JN078_001734"
     CDS             complement(4464..4898)
                     /locus_tag="JN078_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001556209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040973.1"
                     /translation="MRILNCYMANDSKGHFVTAKEAAKHNRQDVLCCVSCGCPLTLQR
                     GNDGQPPWFEHDQMTVAEKILLRCTWLDPAEKEARRLHLQGMTVPDYTVKVRKWFCVM
                     CDENYEGEKCCPRCGTGVYSRAWGRQEVPSEDARADNPLQRL"
     gene            complement(4886..5287)
                     /locus_tag="JN078_001735"
     CDS             complement(4886..5287)
                     /locus_tag="JN078_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004020115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040974.1"
                     /translation="MYAKSFIALDGNGRLTGARTAQAAPYANYTCHLCGSALRYHPQY
                     DTELPWFEHTDDRLTEHGQQCPYVRPERREIQLIKRLQQFVPDALPVVRKASWHCRQC
                     HHDYYGEQYCTHCQTGGFSIPRTTQEEICEF"
     gene            complement(5547..6116)
                     /locus_tag="JN078_001736"
     CDS             complement(5547..6116)
                     /locus_tag="JN078_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000221568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inovirus Gp2 family protein"
                     /protein_id="HAY9040975.1"
                     /translation="MTYKYNPFWQQRIRETVRHALDVHPRLTALRVDLRLPDVPAATD
                     AAVISRFINALKARIDAYQKRKHREGKRVHPTTLHYVWAREFGECKGKKHYHLMLLVN
                     RDTWCRAGDYRAPESLAGMIKQAWCSALGVDVGCHATLVHFPAWPAVWLARNDDTGFQ
                     QVLERADYLAKEHTKAHCTGERNFGCSRS"
     gene            complement(6789..6998)
                     /gene="hha"
                     /locus_tag="JN078_001737"
     CDS             complement(6789..6998)
                     /gene="hha"
                     /locus_tag="JN078_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000453335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin expression modulator Hha"
                     /protein_id="HAY9040976.1"
                     /translation="MEVKTKEDWLYQFRRCSSRETLEKVISHTRYKLTPAELAFNSAV
                     DHRLAELTMNKLYDRVPASVWKYVT"
     gene            7697..7903
                     /locus_tag="JN078_001738"
     CDS             7697..7903
                     /locus_tag="JN078_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family transcriptional regulator"
                     /protein_id="HAY9040977.1"
                     /translation="MNTPVSLMDDQMVDMAFITQLTGLTDKWFYKLIKDGAFPAPIKL
                     GRSSRWLKSEVEAWLQARIAQSRP"
     gene            7989..8561
                     /locus_tag="JN078_001739"
     CDS             7989..8561
                     /locus_tag="JN078_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040978.1"
                     /translation="MQKLENRCDLLLTQHQKWMASVTRFIVAHGMGSPHLHGYHRLTL
                     AHFFLPEKGTIISVAPQGLYQVVNPATPPFIPAIQEGLMTSIQTHEIMLLTHFNLGGV
                     LLSELHRLGESRLANRLNSLLRRFDDRDLYHTLIWLCWYDLMCAHSMQPWTEELKHKS
                     HAELESWAVARKREKRELELMIDEYLLYAC"
     gene            8770..8877
                     /locus_tag="JN078_001740"
                     /pseudo
     CDS             8770..8877
                     /locus_tag="JN078_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            10054..11073
                     /locus_tag="JN078_001741"
     CDS             10054..11073
                     /locus_tag="JN078_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HAY9040979.1"
                     /translation="MNNEQMLIKCKDPRKCRFYAEYLNHKYPNEFPQFAPDNPQNCIR
                     NVNSFLKEKYYKASNNSFGVFGSTAEEALSKEINELEIIAGQAILPEESFLWLKTDEL
                     ATFFTWTTIYLSKEDHTKFPKINHNSSGIKNGIEVRKIRTVTDETLNTYKKSNLPDNP
                     SSHNERIKVIISYFDSCHSLINKNAKSIYLEELRQAWLKKKSACQKFKWLLPDDDEMC
                     QWFWTRLKQKQDEKHPVHNPVTRWFIPSSTKEYYLASLVAFALWKEAPDTIELFRTRI
                     NHAWHQKKQKDKYRSDGKKAINIHIRSNVKEMLDELRTVYGLRTGEFFEMLITEKYLE
                     HKRRK"
     gene            11183..12055
                     /locus_tag="JN078_001742"
     CDS             11183..12055
                     /locus_tag="JN078_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase family protein"
                     /protein_id="HAY9040980.1"
                     /translation="MNPSDAIEAIEKPLSSLPYSLSRHILEHLRKLTSHEPVIGIMGK
                     SGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLSGHGHSMVITDLPGVGESRDRDA
                     EYEALYRDILPELDLVLWLIKADDRALSVDEYFWRHILQCGHQQVLFVVTQADKTEPC
                     HEWDMAGIQPSPAQEQNIREKTEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALP
                     DHAASPLMTRLQDELRTESVRAQAREQFTGAVDRIFDTAESVCVASVARTVLRAVRDT
                     VVSVARAVWNWIFF"
     gene            12383..15508
                     /gene="ag43"
                     /locus_tag="JN078_001743"
     CDS             12383..15508
                     /gene="ag43"
                     /locus_tag="JN078_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter adhesin Ag43"
                     /protein_id="HAY9040981.1"
                     /translation="MLMKRHLNTCYRLVWNHITGAFVVASELARARGKRGGVAVALSL
                     AAVTSLPVLAADIVVHPGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDDNTG
                     GQQIARGGTARNTTVTANGLQDVMAGGSATDTVISAGGGQNLRGQAYGTVLNGGEQWI
                     HAGGSASGTVINQSGYQTIKHGGQATGTIVNTGAEGGPESENVSSGQMVGGTAESTTI
                     NKNGRQVIWSSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHKYGLALNTVINEGG
                     WQVIKEGGTTAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLGAFS
                     VVAGKADNVVLENGGRLDVLSGHTATNTRVDDGGTLDVRNGGAATTVSMGNGGVLLAD
                     SGAAVSGTRSDGTAFRIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGSL
                     AGTTTLNNGATLTLSGKTVNNDTLTIHEGDALLQGGALTGNGRVEKSGSGTLTVSNTT
                     LTQKTVNLNEGTLTLNDSTVTTDVIAQRGTTLKLTGSTVLNGAIDPTNVTLTSGATWN
                     IPDNATVQSVVDDLSHAGQIHFTSARTGKFVPTTLQVKNLNGQNGTISLRVRPDMAQN
                     NADRLVIDGGRATGKTILNLVNAGNSGTGLATTGKGIQVVEAINGATTEEGAFVQGNM
                     LQAGAFNYTLNRDSDESWYLRSEERYRAEVPLYASMLTQAMDYDRILAGSRSHQTGVN
                     GENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSLTTGV
                     YGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLTHTSSGLWADIVAQGTRHSMKAS
                     SDNNDFRARGRGWLGSLETGLPFSITDNLMLEPRLQYTWQGLSLDDGKDNAGYVKFGH
                     GSAQHVRAGFRLGSHNDMTFGEGTSSRDTLRDSAKHSVRELPVNWWVQPSVIRTFSSR
                     GDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAHSINGSSAEG
                     YNSQATLNVTF"
     gene            15629..18145
                     /locus_tag="JN078_001744"
     CDS             15629..18145
                     /locus_tag="JN078_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708766.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040982.1"
                     /translation="MLQIVGALILLIAGFAILRLLFRALTSTASALAGFILLCLFGPA
                     LLAGYITERITRLFHIRWLAGVFLTIAGMIISFMWGLDGKHIALEAHTFDSVKFILTT
                     ALAAGLLVLPVQIRTIQQSGLTPEDISKEINGYYCCFYTAFFLMACSAYAPLIALQFD
                     ISPSLMWWGGLLYWLAALVTLLWAASQIQALKRLTSAISQTLEEQPVLNSKSWLSSLQ
                     NDYSLPETLTERIWLTLISQRISRGELREFELADGNWLLDNAWYERNMAGFNEQLKEN
                     LSFTPDELKTLFRNRLNLSPEANDDFLDRCLDGGDWYPFSEGRRFVSFHHVDELRICA
                     SCGLTEVHHAPENHKPDPEWYCSSLCRETETLCQDISERSYTGFISDATANGLILMKL
                     PETWSTNEKMFASGGQGHGFAAERGNHIVDRVRLKNARILGDNNARNGADRLVSGTEI
                     QTKYCSTAARSVGAAFDGQNGQYRYMGNHGPMQLEVPRDQYAGAVETMKNKIREGKVP
                     GVTDPAEASRLIRRGHLTYTQARNITRFGTIESVTYDIAEGSVISLAAGGISFALTAS
                     VFWLSTGDRDAALQTAAVQAGKTFTRTLAVYVTTQQLHRLSVVQGMLKHIDFSTASPT
                     VRLALQKGTGAGNISALNKVMKGTLVTSLALVAVTTGPDMIKMLRGRISGAQFIRNLA
                     VASSGVAGGAVGSVAGGILFSPLGPFGALTGRVVGGVLGGMIASAVSGKIAGALVEED
                     RVKILAMIQEQVTWLAGSFLLTGHEIENLNENLARVIDQNALEIIFAAGIQQRAATNM
                     LIKPLVVSIIRQRPVMEYDASHLGNMVNRLEEAFPPELPA"
     gene            18221..18676
                     /locus_tag="JN078_001745"
     CDS             18221..18676
                     /locus_tag="JN078_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040983.1"
                     /translation="MIHLFKTCMITAFILGLTWSAPLRAQDQRYISIRNTDTIWLPGN
                     ICAYQFRLDNGGNDEGFGPLTITLQLKDKYGQTLVTRKMETEAFGDSNATRTTDAFLE
                     TECVENVATTEIIKATEESNGHHVSLPLSVFDPQDYHPLLITVSGKNVN"
     gene            18755..18910
                     /locus_tag="JN078_001746"
     CDS             18755..18910
                     /locus_tag="JN078_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001119728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF905 domain-containing protein"
                     /protein_id="HAY9040984.1"
                     /translation="MPGYTEYVLAEGSFSYGQAVAVITAYRNVFIQDDPGMHFRRVIR
                     NAEGQRR"
     gene            19089..19910
                     /locus_tag="JN078_001747"
     CDS             19089..19910
                     /locus_tag="JN078_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF945 domain-containing protein"
                     /protein_id="HAY9040985.1"
                     /translation="MRLASRFGYAANQIRRDRPLTHEELMHHVPGIFGEDKHTSRSQN
                     YTYIPTITVLESLQREGFQPFFACQTRVRDPGRRGYTKHMLRLRRAGEINGEHVPEII
                     LLNSHDGTSSYQMLPGYFRFVCQNGCVCGQSLGEVRVPHRGNVVDRVIEGAYEVVGVF
                     DRIEEKRDAMQSLILPPPARQALAQAALTYRYGDEHQPVTTADILTPRRREDYGKDLW
                     SAYQTIQENMLKGGISGRSAKGKRIHTRAIHSIDTDIKLNRALWVMAETLLESLR"
     gene            19965..20450
                     /locus_tag="JN078_001748"
     CDS             19965..20450
                     /locus_tag="JN078_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antirestriction protein"
                     /protein_id="HAY9040986.1"
                     /translation="MKTISHNSTTSSVSVTAASGNDQPQLVATLVPDEQRISFWPQHF
                     GLIPQWVTLEPRVFGWMDRLCEDYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNA
                     MNGNRAEMSPEAAGIAACLMTYSHHACRTECYAMTVHYYRLRDYALQHPECSAIMRII
                     D"
     gene            20466..20942
                     /locus_tag="JN078_001749"
     CDS             20466..20942
                     /locus_tag="JN078_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RadC family protein"
                     /protein_id="HAY9040987.1"
                     /translation="MQQLSFLPGEMTPGERSLIQRALKTLGRHLHEPGVAFTSTHAAR
                     EWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAA
                     VVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL"
     gene            21029..21250
                     /locus_tag="JN078_001750"
     CDS             21029..21250
                     /locus_tag="JN078_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF987 domain-containing protein"
                     /protein_id="HAY9040988.1"
                     /translation="MKIITRGEAMRIHRQHPASRLFPFCTGKYRWHGSAEAYTGREVQ
                     DIPGVLAVFAERRKDSFGPYVRLMSVTLN"
     gene            21413..21781
                     /locus_tag="JN078_001751"
     CDS             21413..21781
                     /locus_tag="JN078_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001285584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV toxin-antitoxin system YeeU family
                     antitoxin"
                     /protein_id="HAY9040989.1"
                     /translation="MSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYL
                     ADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCKAD
                     TLGSGGYVYLAVYPTPETKK"
     gene            21871..22245
                     /locus_tag="JN078_001752"
     CDS             21871..22245
                     /locus_tag="JN078_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin"
                     /protein_id="HAY9040990.1"
                     /translation="MKTLPDTHVREASSCPSPVTIWQTLLSRLLGQHYGLTLNDTPFA
                     DERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGFSTCPRSQLINSIDILRARRATG
                     LMTRDNYRTVNNITLGKHPEKR"
     gene            22242..22730
                     /locus_tag="JN078_001753"
     CDS             22242..22730
                     /locus_tag="JN078_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9040991.1"
                     /translation="MKLSLMLEADRINVQALNMGRIIVDVDGVNLTELINKVAENGYS
                     LRVVEESDQQSTCTLPPFATLAGIRCSTAHITEKDNAWLYSLSHQTSDVGESEWIHFT
                     GSGYLLRTDAWSYPVLRLKRLGLSKTFRRLVITLTRRYGVSLIHLDASAECLPGLPTF
                     NW"
     gene            22742..22939
                     /locus_tag="JN078_001754"
     CDS             22742..22939
                     /locus_tag="JN078_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF957 domain-containing protein"
                     /protein_id="HAY9040992.1"
                     /translation="MKSLTTETALDILIAWLQDNIDCESGIIFDNNEDKTDSAALLPC
                     IEQAREDIRTLRQLQLQHQNR"
     gene            23149..23277
                     /locus_tag="JN078_001755"
                     /pseudo
     CDS             23149..23277
                     /locus_tag="JN078_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014837283.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
BASE COUNT         5970 a         6238 c         6073 g         5665 t
ORIGIN      
        1 gggatatggc cctgcctttc cagcaatcgt cgattgttat accagtccac ccacgtgagt
       61 gtggtcagct catcatactg acacgtgcat tacccctacc gcgataatgc aaccgtacaa
      121 tatagggcgt ttcctaaacg cagccctcat cactccaatc caacaagaca cagcattttt
      181 gatcacgaag aaagacaaat aatttccgta aatgtttccg ttgttacaaa taacaacagt
      241 gttttacatt tctttggcct caggcccgcg catgttgcca ttcgatgtta ttttcctgac
      301 tcgtttcttc tttatggtgt agtgtgatct tcactttatg gatgctaaca atatgaaaag
      361 aaaaattatt cccgtgctaa tcggttgtac gctctctttc tctgccctgg cggcacaacc
      421 tacggctgag cgctatgtcg tcagttttcc agaaggcacg cacgtgaact acgccggcgc
      481 atttgccagt gcattcccga acggccttcc ggttgggata ggttctggcc tgctgttcac
      541 cggtaaacag ggcgatgccc tgacattcgc aaccattacc gatcgcggtc cgaacgcgga
      601 ttcaccgaaa gaggggaaaa acgaaactaa aattttcgtt acgccagatt tcgcgccgct
      661 gctgatgacg attcgtgtac aaaacggcaa agcggaggcc atcgatcccc gtcctctgca
      721 tgacgataaa ggtgcgatca acggtctgcc gctggcaagc gacgtgattg gctccaccaa
      781 tgaagtggcc ttcagcgaca cgttacatag actgaagggg gataatcacg ggctggatac
      841 ggaagggatc actccggatg gtaaaggagg ttactggctg tgcgatgagt atggcccgtt
      901 cctgattaac atcgacagta aagggaaaat cctggcaatc cacggtccgc aggcggcgga
      961 aggggaaaaa gcgattgcgg gcggtttgcc aaatatcctc aaatggcgtc aggcgaaccg
     1021 cggctttgaa ggcctcaccc gtatgccgga cgggcgtatt attgtcgccg tgcaaagtac
     1081 gctggatatc gacgctaaga gcaagaaaaa ggcgctgttt acgcgtctgg tgagcttcga
     1141 tccggcaagc ggaaaaaccg cgatgtacgg ttatcctatc gacagcgcgg cctacagcaa
     1201 aaacagcgac gctaaaatcg gagacatcgt ggcgctcgat aaccagcaca tcctgctgat
     1261 cgaacaggga agagataaaa acaacagaat gcgtaacctg atttacgagg tcgatctcaa
     1321 taaggcgagc gacctgtcag gcttcgacaa gccgggtgag tatccggagt ttgatgatga
     1381 gaaaaccctg tcacagcgcg gcattaccct tgcgcagaaa acgcaggttg ttgatctgcg
     1441 ctccttgggc tggcagcagg agaaggctga agggttggcg ctgatcgaca gcaaaacgct
     1501 ggcggtggcg aacgataacg actttggcgt gaaggtggcg atgcaacatc cggtcgaggg
     1561 caagacattc aaggattatc gggtgaacgc ggaaggaaag ctgacgcttg acgacaagca
     1621 ggttgaaacg accctcagag tgaagccact ggagaaaccg gagtctgaca gtgaactgtg
     1681 gattgtgacg ctgccggaag cgttgaaata agtttataag gtacggacag cagtatcgct
     1741 tagtttttca aattcatgta tgtgaacaat attggggttc cggcgtagac cctcaatgaa
     1801 agcgtcacca cgtgaaaaca tgcctgcacg gtttacacgt catcccatgg tggcagccgg
     1861 ttaactttcc tgctacacca gtggaaaaag gccataagca gtccgaacaa aagtaagcgt
     1921 acagcgaggg ccgtattgac ggggatgtgt tattcagctg gcagtgctat gcgccacgga
     1981 agcagttcgc tgacccggtt gaccggccag tctgctatga cgccaagcac atggcgaagg
     2041 tagctttctg gatccacgtc attcagtttg cacgtcccga tcaggctgta cagtagcgct
     2101 ccccgctcac caccatggcc agagccgaag aacagggtct tcatcttttc acgcaaccag
     2161 ctttccaggg atttcaacag cggtttcgtt tttcgctgac gttcagcaag ccgctgctct
     2221 gccggcattc cccttatatc cgcctctatg gcgtacaact gaccgatctg ctccagggct
     2281 tcttccgtca gtgctgacgg gatgcggacg tgcacatcgt ggatctttca gcgggcatga
     2341 gcccagcagg cagcttccgt tatcccacca ttgcgataca gctcgttgaa cccggcgtac
     2401 gcatccgctt gcagcacacc gctgaagcaa gcaagatgag tctgcggatg gatgcctttt
     2461 ctgtccgggc tgtaagcgaa cctcactgca ggtgccaacg ctgacccggc attgcggtca
     2521 tcacgaacat acgcccacaa ccgcccggtc ttcgtcttct tattacccgg cagcagtacc
     2581 tggaccgggg tatcatcggc atggagtttg ccgtcagtca tgacatagcc atgaagcgcc
     2641 tcttccagcg gagacagcag ccggcagcat gcatccaccc agcccgacag cagtgaacgg
     2701 ctcagctcca caccttgccg gccgtatatt tctgactggc gatacagcgg ggtgtgctct
     2761 gcatacttcg aggtcagcac gcgggccagc agccccggtc cggcgatacc ccgctcgatg
     2821 ggccgcgaag gtgcaggtgc ctgcacgatg gtatcgcact gagtacaggc atgtttttcc
     2881 tgtaccgtcc ggataacccg gaaggcgcta cgcatcaact ccagctgttc ggcggtatcc
     2941 tcgcccagat agctcagtga accgccgcag ttcgggcagc acggcgccgc aggcaacagt
     3001 cgcttttcgt cacggggtag tgattcaggg aacggcttac gggtgcgggt ctgacgcaac
     3061 ggacgctgta ctgccgggtc atacacccta ccagtcagcg tatcgctctc tttctgaagt
     3121 cggttcagat cggcttccat ttgtgcgata cggcgggaga ctttttcgga acgactgccg
     3181 aagttcatcc ggcggagttt atccagctgc gcctgcagat ggtctatttc gcgctcccgg
     3241 ttgctcagct tttcctgcag ggcgtggatc agcgcttcct gttcggccag gcgctgtttc
     3301 agcaggaaga tgtcgtcaga agagatgtcg ttcataagcc cgtattttac cgggcttatt
     3361 ctgtgacaac caggataaag agatttacag catggtcagg gaggtcagca gccgcttagg
     3421 ctgtcgccag tcgatacctt ccagcagcat cgccagctgc gcctgcgtaa ggaacacttt
     3481 gccatcacgg gctgacggcc aggcgaagcg cccacgctcc agccgtttgg tcaggaggca
     3541 cagtccgtca ccggtggacc acagcagttt aacctgactg ccgctgcggc cccggaaaat
     3601 gaaaacatgg ccggacatgg gatcgtcttt cagcgccgtt tgtgctttcg cagccaggcc
     3661 gttgaagcca tttctcatat cggtgatacc ggcaaccagc caaattttgg tcccggaagg
     3721 taacgggatc atcgcttcag ttcctgtatc agtagagtca ggagcttttc gctgacattg
     3781 ccattgaagc ggagcgtccc gtgccggaac gttacctcac agctgatact gagggtttcc
     3841 gggtcctctg cgagcgattc tggctgttcg gcagcggcat cgagagtcac aggaagtagc
     3901 tgggggctct ctgaagaagg taatagcagc tttccctcgc gccattgttg tcgccatttg
     3961 aacaacagat tggcgttaat gccattttca agagcaagtt ttgagatgga tatcccgggt
     4021 tcacaggtgg cagcaacgag ctgctgttta aattcgggag gataattagg gcagcctttt
     4081 cgcctgccgg gagtcacatt tttctgcata tctgatactt tggttcccac tacttatttg
     4141 gtggacacca ctttgtctaa ttcgtcagat tctgaccaga cggttcaggc tgtacgctta
     4201 ccactatttt atccctgttg aatttggtta agccggtgca gacgcgccgg gaaacgcaca
     4261 cctgaaccgg cacaataaaa tacaatacaa ccccctgtta ctggagatac gaatggaatg
     4321 acgaggcagc ctgtcagtca cagggggctg ttggcataaa atcaacggaa aggccaccaa
     4381 caccggaatt aagctccaca gtccccgcac tggcaatcca ttcccgggaa aggcatcacc
     4441 gcaaactgct ccggaggcaa ccattacagc ctctgtaacg gattatcagc cctggcatct
     4501 tccgacggca cctcctgccg cccccacgcc ctgctgtata ccccggtacc gcagcgtggg
     4561 cagcactttt ccccctcata attttcgtca cacatcacac aaaaccactt tctcaccttc
     4621 accgtataat ccggaaccgt catgccctgc agatgcaaac gacgggcctc tttctctgcc
     4681 gggtcaagcc aggtacatcg cagcaggatt ttttcagcga cagtcatctg gtcatgttca
     4741 aaccacggtg gttgtccgtc attgccccgc tgaagtgtta acgggcatcc acaggacaca
     4801 cagcacaaaa cgtcctgtcg gttgtgcttc gcagcttctt tcgccgtaac aaaatggcct
     4861 ttgctgtcat tcgccatata acagttcaga attcgcatat ttcctcctga gttgtccggg
     4921 gaatactgaa tcctccggtc tggcagtgtg tgcagtactg ctccccataa taatcgtggt
     4981 gacattgtct gcagtgccag ctggctttac gcaccacggg taaggcatcc ggtacgaatt
     5041 gctgcagacg tttaatcaac tgtatttctc tgcgctccgg cctgacataa gggcactgtt
     5101 gaccgtgctc tgtcagcctg tcgtcagtgt gttcaaacca gggaagttca gtgtcgtatt
     5161 gcggatggta tctgagtgca ctgccacaca agtggcaggt gtagttagca taaggtgcgg
     5221 cctgtgcagt acgggcgccc gtcagacgtc cgttgccatc aagagcgata aaggattttg
     5281 cgtacatagt catatacctc agccgccaga cgacacgcag gcaacagccg tcccggtacg
     5341 ggcagcgtgg tcagggtgtg aatggcggtt cagttaaaat ctggactgga gtttgggtaa
     5401 agcaggctgg ttgctgttac agcactgtgg ttgtcacaca atggaacact gacgtaaaaa
     5461 acagtcagtg ggcgagtgga tacatcgttg ccgccagaca acaacccata cttttggttt
     5521 gccggatatt ggcgcgccag tcgtgctcaa ctccggctac agccaaaatt gcgctcaccg
     5581 gtgcagtgag ctttggtatg ctccttcgcc agatagtcag cacgttccag cacttgctga
     5641 aagccggtgt catcattacg cgccagccac accgccggcc aggccggaaa atgcaccagc
     5701 gtggcatggc acccgacatc cactcccagg gcactgcacc acgcctgttt aatcatcccg
     5761 gcgagagact ccggagcgcg gtaatcaccg gcacgacacc aggtatcccg gttgaccagc
     5821 agcatcaggt gatagtgttt tttacctttg cactccccaa actcccgggc ccagacgtaa
     5881 tgcagggttg tgggatgcac gcgtttacct tcccgatgct tacgtttctg gtaagcgtcg
     5941 attcgggctt tcagggcatt gatgaagcgg gatatcacag ctgcgtccgt tgctgccggc
     6001 acatccggga gacgcagatc aacccgaagt gccgtcaggc ggggatgaac atccagtgcg
     6061 tgccgcaccg tctcacgaat acgttgctgc cagaaggggt tgtatttgta ggtcatggtt
     6121 aaatctccgt atggttcata cggaatagcc acgtcgtaaa aaatacgcag agtccctgaa
     6181 gtgacctccg gcaggacact gtctcaggca ctctgtgata acccgaacgg tcgtctccgg
     6241 actgacggtt gaattttcag cgttgttttt taatgtaaaa aaccggttac gggtaaggct
     6301 gtgaggaggg agtgatggtg atacgcaaaa agaagtgcag ggactgtgga aacgcgatta
     6361 ctcataatac agtgtgttgc ccgtattgtg gtcctgctga ctactgtcag cgtcagtgtg
     6421 tgtatactgt gtagctggtg agataacggt tcatgtatcc cctgagctga caatgtaccg
     6481 tgtatattaa gcgtaaccga caggttctcc ttcataccat attaaatttt ccaggtattg
     6541 ccgctgcctt atttcgtccc atacaggaaa actcatctgg gtttctgaca aatacgcgaa
     6601 actcacagcc cctcaatatc aaccacacgt tgtaagccgg taatacctga aaatcagcct
     6661 attaccgccc acgcctccgg caccattccc ttttgatttc gaattctttg ttgccgttat
     6721 actgcttaat gttcccgatc ttccggtgca cagataacac cggagtcatc gtagcgcgga
     6781 ttcaagattc aggtgacata tttccagacg gaagccggca cgcgatcgta aagtttgttc
     6841 attgtcagtt ctgccagccg gtgatcgacc gcagagttaa aggccagttc cgcaggggta
     6901 agtttataac gtgtgtggga aatcactttt tccagcgtct cccgggatga acaacgacgg
     6961 aactgataca gccagtcttc tttggtttta acttccatta gcctctcatc actttatgct
     7021 gcaattaacg tgatactgcc agcataccgc acctgactgg cattctggta cccaccccaa
     7081 actcattact cccgcaccac cacttaaccg gtctctcaga ctgtcactca ccaggtcgga
     7141 tacgtttacc gctcagacgg atgcttaatg cactctgttc acgtgtgttg caggtacgtt
     7201 ttatatacgc aggttatacg ccagctatca gggatagccc tgtgagtaca acgtaatctg
     7261 ttgctactgc gttctcatac ccactgatca cactcacagt gtttatttca cagatatgaa
     7321 ctcatgtgtt tgatctctct tatatattta taataccaat cagacagtct tatcccatcg
     7381 gtgatacctg tctctgccca caaggcacga gctgccccac cgtaaccgcc ccgtaaataa
     7441 ctctgcaatt ataagaacga cggttcttcc cctcatcctc ccgaaaatca tcccttctct
     7501 gtcgtgcgta cgcgcgagaa acatcgtttc gcggtagcca ccgggtatcc cagcatcatg
     7561 ctccctgttt atctcccgac aggaatattc ccctgctcat tttttacgtt tctccccggt
     7621 tgttatgcca gtgaaggtgg tgcgtttttc atcaccaacg ccggttgaga ttaacaacat
     7681 ccggaggaac attttcatga ataccccagt ttcgctgatg gatgaccaga tggtcgacat
     7741 ggcgtttatc actcaactga ccggcttaac cgataagtgg ttttacaagc tcatcaagga
     7801 tggtgccttt ccggccccca tcaaactcgg ccgcagctcc cgatggctga aaagtgaagt
     7861 ggaagcctgg ttgcaggcgc gtattgcaca atcccgtccg taattcctga ccattacccg
     7921 ttcaaccgca gcgaatacac tatccggcct ccggaggcat tttgctgcgt gctaaaggag
     7981 agaatattat gcaaaaactt gaaaaccggt gtgatctgct gctcacccag catcagaaat
     8041 ggatggcaag tgtaacccgg tttattgtcg ctcacggaat gggctctccg catcttcatg
     8101 gttatcatcg cctgaccctg gcccactttt ttctgccgga aaaaggcacc atcatctcgg
     8161 tggcaccaca gggactctat caggtagtca acccggcaac gccaccgttc attcctgcca
     8221 ttcaggaagg gttaatgacc agcattcaga ctcatgaaat catgttactt acacatttta
     8281 acctgggtgg tgttttactc agtgaactac atcgtctggg agaaagccga ctggcaaaca
     8341 ggctgaacag tctgctccgg cgttttgacg atcgcgatct ctaccacacc ctgatatggc
     8401 tgtgctggta tgatctgatg tgcgcccact ccatgcagcc ctggactgaa gagttaaagc
     8461 ataaatcaca cgcagaactt gaaagctggg ctgtggcgcg caaacgggaa aagcgcgagc
     8521 ttgaactgat gattgacgag tacctgttat acgcctgttg attcataatc actcccgggc
     8581 ggtacgtagt cagtgatacc ggaatttccg gagagggtcg caggtatatt gtttctgtgc
     8641 aattcatggt tattcacgtt ggatgtagtg attgctgcat ccaatgctat cggaaagaga
     8701 ttaaccagca aatggttcct caaatcgtat tgatatttac ctggcgcatt gagcaccacc
     8761 atctgccccc gttcccacat caaacggctg gaccggaaaa cgatttgctt ttcatgctcc
     8821 gtggaaattc acgaaaaagt tattgggtca ttcatcgaaa aaaacatatt ctgctgactg
     8881 gagtcatcac ccagaaataa acgtcaactg aacaataacg attttttctt tgtgggattc
     8941 catacacttt tccatccccc tctgaaaatt agtcatcaac tcaccaacac atcttctgaa
     9001 atttgtatta aacttattgc ttaaatagat gatataatat ctcttccatt gcacggaatc
     9061 agcaaaaact gtcattctgg caatcttaac aagaacattt atcggttaat tttatcagta
     9121 aacaatggaa tatcatactg ataaaatgaa cattcagggt aagatgatga aattcacatg
     9181 aaaaatgctg aagattattt atttcatgca gataaacgat aaaaaacaag agagtatatt
     9241 tttcagtgta agagtcaact gttcatctcc actgacaatc acggtcagca tacaaacaaa
     9301 gtgagtcctc ctgcttagtc attgcgtatc agaaactaaa aaacaaaaga ttctgcaaac
     9361 aacgtgacat ttttatgaca tttcccgaat acatgtatat caataaacgg tagtcatcgt
     9421 tgaattaata agtcttacag agctatacgt agcttataaa accactcaac gaccatcatc
     9481 acctgactat ttagcgggag tatcgtctgt ataaatccat aaataataac acctgttatt
     9541 aaaataagaa tgctgtcagc cgtaaactat taacacaaca cctgtccact ctatctgttc
     9601 ttttaactca accggcgtcg aaaatatttc ctgattagtg catcatagtc ttcttttttc
     9661 tttctcaacc atcaaaccaa acacaacatt cacaaccaca caataaaaca aaaccaaaac
     9721 ataagattaa caatgccagt caacaggaaa acactgaata ttgaggtgcg ctgtaacctg
     9781 gacagcgcat acggcgcatg tgatcaacac agcccattct tttctgtcat cccccaaatg
     9841 cagaacaaac aatcataacc aaatgaatat aaaagaaaat atgatttttc accatcataa
     9901 aaacatcaat gtatctttat ataaaaacac tgataacatg acatagacat ttaaaaacat
     9961 aaacaaatca caacaaaaac atttgataat cacttagtga caaaataaaa ttgagacgat
    10021 tttgttataa gagaggcgac atggagtgag ataatgaata acgaacagat gcttatcaaa
    10081 tgcaaagatc cccgtaaatg tcggttttat gccgaatatc tgaatcacaa ataccccaat
    10141 gaattccctc agtttgcgcc tgacaaccca caaaactgta tcagaaatgt taattcgttt
    10201 ttaaaagaaa agtattataa agcttcaaac aattcttttg gtgtttttgg ttcgactgca
    10261 gaagaagctc tcagcaaaga aattaatgaa cttgaaatta ttgcagggca ggcaatactg
    10321 cctgaagaga gttttctctg gttgaaaact gacgaacttg cgactttctt tacctggact
    10381 actatttatc tgtcgaagga agaccataca aaattcccga aaataaacca taattcatca
    10441 ggaataaaaa acggaattga agtcaggaaa atacgaacag ttaccgatga aacgttaaat
    10501 acttacaaaa aaagtaacct tccggataat ccatcatccc ataacgaacg aataaaagta
    10561 atcatttcat attttgactc ctgccattct ttaattaata aaaatgcaaa aagcatatac
    10621 ctcgaggaac tcagacaggc gtggcttaaa aagaaaagcg cttgtcaaaa gtttaagtgg
    10681 ctccttcctg atgatgatga aatgtgtcag tggttctgga caagactgaa acaaaaacag
    10741 gatgaaaaac atccagtaca taacccagtg acccggtggt tcataccatc ttcaacgaaa
    10801 gaatattatc ttgcctctct tgtcgccttt gctttatgga aagaagcgcc tgataccatt
    10861 gaactgttca gaacacgaat aaatcatgcc tggcatcaga aaaaacaaaa ggacaaatat
    10921 cggagtgatg gtaaaaaggc cattaatata catataagaa gcaatgtgaa agaaatgctt
    10981 gatgagctca gaactgttta cggtctgaga acaggagagt tttttgaaat gctgattaca
    11041 gagaaatatc ttgaacacaa gcgaaggaag taattcatta cctgttacat tctaaataat
    11101 ctcagacaga tattatctcc gtgaatcccc cgccaccttt ccggtgcgcg gggttttgtc
    11161 ttttttcacc gggaatacat gtatgaatcc gtctgatgcc attgaggcaa ttgaaaaacc
    11221 gctctcctcc ctgccttact cactttcccg tcacatcctg gaacatctgc gcaaactcac
    11281 cagtcacgaa cccgtgattg gcattatggg taaaagcggg gccggtaaat cttcactctg
    11341 taatgcactg tttcaggggg aggtcacacc ggtcagtgat gttcacgccg gcacccggga
    11401 agtgcagcgc ttccgtctga gtggtcacgg tcacagcatg gttatcactg acctgcccgg
    11461 ggtgggcgag agccgggaca gggatgcaga gtatgaagcc ctgtaccgtg acattctgcc
    11521 tgaactggac ctggtgctgt ggctgattaa agccgatgac cgggccctgt ctgtggatga
    11581 gtatttctgg cgacacatcc tgcagtgcgg acatcagcag gtgctgtttg tggtgacgca
    11641 ggctgacaaa acggaaccct gccatgaatg ggatatggca ggtattcagc cttctcccgc
    11701 acaggaacag aacattcgtg agaaaacgga ggcggtattc cgtctgttcc ggcccgtaca
    11761 tccggttgtt gccgtatcgg cccgcaccgg ctgggaactg gatacgctgg tcagtgcgct
    11821 aatgacagca cttcccgacc atgccgccag tcccctgatg acccgcctgc aggacgagct
    11881 gcgcacggaa tctgtccgcg ctcaggcccg tgaacagttt accggtgcgg tggaccggat
    11941 atttgacacg gcggagagcg tctgtgttgc ctctgttgcc cgtacggttc tgcgtgccgt
    12001 ccgtgacacg gtggtctctg ttgcccgcgc ggtatggaac tggatcttct tctgaacctg
    12061 ttgtggatga tgtcctccct gcctctgagt ctgctcacaa aagcgctgtt ttcgttactg
    12121 tctctcttgt ccgtgcaata gcctgataat agaataaaac gatcgatatc cattttatcg
    12181 atcgtttata tcgatcgtca tgctaataat aactcctgtt agcaacgtgc gcagatacac
    12241 acagacatga gattcaggga acaacagagc cacacgtcag aaacttccgt cagccggacc
    12301 tccggcactg taacccttta cctgccggta tccacatctg tggataccgg cttttttatt
    12361 caccctcact ctgattaagg aaatgctgat gaaacgacat ctgaatacct gctacaggct
    12421 ggtatggaat cacattacgg gcgctttcgt ggttgcctcc gaactggccc gcgcacgggg
    12481 taaacgtggc ggtgtggcgg ttgcactgtc tcttgccgca gtcacgtcac tcccggtgct
    12541 ggctgctgac atcgttgtgc acccgggtga aacagtgaat ggcggaacac tggtaaacca
    12601 tgacaaccag tttgtatccg gaacagctga tggcgtgact gtcagtaccg ggcttgagct
    12661 ggggccggac tctgatgaca acaccggcgg tcagcagata gcccggggtg gcactgccag
    12721 aaacaccacg gtcaccgcaa acggtctgca ggatgtcatg gcaggtggca gtgccacgga
    12781 tacggttatc agtgccggtg gaggacagaa tctgcgcggg caggcttacg gtactgtcct
    12841 taacggtggt gaacaatgga tacatgcagg cggcagtgca tccggaacgg tgattaacca
    12901 gtctggctac cagaccatta aacatggcgg gcaggcaacc ggaaccatcg tcaacaccgg
    12961 tgcagaaggt ggtccggagt ctgaaaatgt gtccagcggt cagatggttg gagggacggc
    13021 tgaatccacc accatcaaca aaaatggccg gcaggttatc tggtcttcgg ggatggcacg
    13081 ggacaccctc atttacgccg gcggtgacca gacggtacac ggcgaggcac ataacacccg
    13141 gctggaggga ggaaaccagt atgtgcacaa atacggactt gcgctgaaca cggtaattaa
    13201 cgaggggggc tggcaggtga ttaaggaagg aggaactacc gcgcatacca ccatcaacca
    13261 gaaaggaaag ctgcaggtga atgccggcgg taaagcgtct gatgtcaccc agaacacggg
    13321 aggtgcactg gttaccagca cagctgcaac cgtcaccggc acaaaccgcc tgggagcatt
    13381 ctccgttgtg gcgggtaagg ctgataatgt cgtactggaa aatggcggac gtctggatgt
    13441 gctgagcgga cacacagcca ctaatacccg tgtggatgat ggcggaacgc tggatgtccg
    13501 caacggtggt gccgccacca ccgtatccat ggggaatggc ggtgtactgc tggccgattc
    13561 cggggccgct gtcagtggta cccggagcga cggaacggca ttccgtatcg gaggcggtca
    13621 ggcggatgcc ctgatgctgg aaaaaggcag ttcattcacg ctgaacgccg gtgatacggc
    13681 cacggatacc acggtaaatg gcggactgtt cactgccaga gggggctcgc tggcgggcac
    13741 caccacgctg aataacggtg ccacgcttac tctttccggg aaaacggtga ataacgatac
    13801 cctgaccatc catgaaggtg atgcactcct gcagggaggc gctcttaccg gtaacggcag
    13861 ggtggaaaaa tcaggaagtg gcacactcac tgtcagcaac accacactca cccagaaaac
    13921 cgtcaacctg aatgaaggca cgctgacgct gaacgacagt accgtcacca cggatgtcat
    13981 tgctcagcgc ggtacaaccc tgaagctgac cggcagcaca gtgctgaacg gtgccattga
    14041 ccccacgaat gtcaccctga catccggtgc cacctggaat atccccgata acgccacggt
    14101 tcagtcggtg gtggatgacc tcagccatgc cggacagatt catttcacct ccgcccgcac
    14161 agggaagttc gttccgacaa ctctgcaggt gaaaaacctg aacgggcaga atggcaccat
    14221 cagcctgcgt gtacgcccgg atatggcgca gaacaatgct gacagactgg tcattgacgg
    14281 tggcagggca accggaaaaa ccatcctgaa tctggtgaac gccggcaaca gtggtacggg
    14341 gctggcgacc accggtaagg gtattcaggt ggttgaggcc attaacggtg ccaccacgga
    14401 ggaaggggct tttgtccagg ggaatatgct gcaggccggg gcctttaact acaccctcaa
    14461 ccgggacagt gatgagagct ggtatctgcg cagtgaagaa cgttatcgtg ctgaagtccc
    14521 cctgtacgcc tccatgctga cacaggcaat ggactatgac cggattctgg caggctcacg
    14581 cagccatcag accggtgtaa acggtgaaaa taacagcgtc cgtctcagca ttcagggcgg
    14641 ccatctcggt cacgataaca acggcggtat tgcccgtggg gccacgccgg aaagcagcgg
    14701 cagctatggc ttcgtccgtc tggagggtga cctgctcaga acagaggtcg ccggtatgtc
    14761 actgacgaca ggagtgtatg gtgctgcagg ccattcttcc gttgatgtta aggatgatga
    14821 cggctcccgc gccggcacgg tccgggatga tgccggcagc ctgggcggat acctgaatct
    14881 gacacataca tcctccggcc tgtgggctga cattgtggca cagggaaccc gccacagcat
    14941 gaaagcatca tcggacaata acgacttccg cgcccggggc cggggctggc tgggttcact
    15001 ggaaaccggt ctgcccttca gtatcactga caacctgatg ctggagccac gactgcagta
    15061 cacctggcag gggctctccc tggatgacgg taaggacaac gccggttatg tgaagttcgg
    15121 gcatggcagt gcacaacatg tgcgtgccgg tttccgcctg ggcagccaca acgatatgac
    15181 ctttggtgaa ggcacctcat cccgtgacac cctgcgcgac agtgcaaaac acagtgtgcg
    15241 tgaactgccg gtgaactggt gggtacagcc ttctgttatc cgcaccttca gttcccgggg
    15301 ggacatgagc atgggtacag ccgcagccgg cagtaacatg acgttctcac cgtcacagaa
    15361 tggtacgtca ctggacctgc aggccggact ggaagcccgt gtccgggaaa acatcaccct
    15421 gggcgttcag gccggttatg cccacagcat caacggcagc agcgctgaag gttataacag
    15481 tcaggccacg ctgaatgtga ccttctgata attctgcatt gcctctctgt ggtcccggtc
    15541 atcatgaccg ggacccggac gggggaaaac gtttcagtgc cacattcact ggcattcaca
    15601 ataacatgat attcatcacg gagtgactat gttacagata gtcggcgcgc tgattctgct
    15661 gatcgcagga tttgccattc ttcgcctttt gttcagagca ttaaccagca cagcgtctgc
    15721 gctggcaggg ttcatattgc tgtgtctgtt cggtccggct ttactggctg gctatatcac
    15781 tgaacgcata acccggttat tccatattcg ctggctggca ggcgtatttc tgacgattgc
    15841 cggaatgatc atcagcttca tgtggggact tgatggtaaa catatcgcac tggaggctca
    15901 tacttttgac tctgtaaaat ttattctgac caccgctctc gccgctggtc tgctggttct
    15961 tcccgtgcag ataagaacca ttcagcagag cgggctcaca cctgaagata tcagcaagga
    16021 aattaacggg tattactgct gtttttatac tgcttttttc cttatggcgt gttctgcata
    16081 cgcaccattg atcgcattgc agttcgatat ttcaccctca ctgatgtggt ggggcgggtt
    16141 gttgtactgg ctggctgcat tagtgacgct gctatgggcg gccagccaga tccaggcgct
    16201 gaaaagactg accagtgcca tcagccagac actggaagaa caaccggtgc tcaacagtaa
    16261 atcgtggctg agcagtttgc aaaacgatta cagccttcct gaaacgctga cggagcgcat
    16321 ctggctgaca ctcatttcac aacggatttc ccggggagaa ctgagggaat ttgaactggc
    16381 agacggaaac tggctactgg acaatgcctg gtatgaaaga aacatggcag ggtttaacga
    16441 acagttgaaa gagaacctgt cattcacacc tgatgaactg aaaacgctct tccggaaccg
    16501 cctgaattta tcaccggaag cgaatgacga ttttctcgat cgttgcctgg acggcggtga
    16561 ctggtacccc ttttcagaag gccgccgttt tgtatcattc caccacgtgg atgagcttcg
    16621 tatctgtgcc tcctgcgggc tgacagaagt acatcatgcc ccggaaaatc ataagccgga
    16681 tccggaatgg tactgctcct ctctttgtcg cgaaacagaa acactgtgtc aggacatttc
    16741 tgaacgttct tacaccggtt ttatttccga tgcaacggcg aatggtctga ttctcatgaa
    16801 actgccggaa acctggagta caaatgagaa aatgtttgct tccggagggc agggacatgg
    16861 gtttgccgct gaacggggaa accatattgt cgacagagtc cgtctgaaaa acgcacggat
    16921 cctcggtgat aataatgcca gaaatggagc agacagactg gtcagcggaa cagaaatcca
    16981 gacgaaatat tgttcaactg cagcccgtag cgtcggtgcg gcattcgacg gacaaaacgg
    17041 acagtatcgt tacatgggaa atcatggtcc catgcaactg gaagtccccc gtgatcagta
    17101 tgccggcgct gtggaaacca tgaagaataa gatccgcgaa ggtaaagtac ccggtgtaac
    17161 cgatcccgca gaagcgtccc ggctgattcg tcggggacat ctgacttata cccaggcccg
    17221 taatatcacc cggttcggga ccatcgaatc ggtcacttat gatattgccg aggggtcggt
    17281 tatcagtctg gcggccggag ggatcagttt tgccctgacg gcatcggtct tctggctcag
    17341 caccggcgat cgcgatgctg ccctgcagac agctgctgtc caggcaggaa aaaccttcac
    17401 ccgcacactg gctgtctacg tcacaaccca gcaactccac cggctcagtg ttgttcaggg
    17461 tatgctgaag cacattgatt tttcgactgc cagcccgact gtccgactgg ctcttcagaa
    17521 ggggaccggt gcaggaaata tcagtgccct gaacaaagta atgaagggta cgctggtgac
    17581 atctctggca ctggtagctg tcacaaccgg ccctgacatg atcaaaatgt tgcggggacg
    17641 gatctccggt gcgcagttca tcaggaatct tgccgtggca tcttccggtg tggcaggtgg
    17701 tgctgtcggg tcagtggcgg gcggaatact gttcagtcca ctgggaccat ttggtgcact
    17761 gacagggcgt gtggttggcg gtgttctggg gggaatgatt gcctccgctg tatcaggaaa
    17821 aattgccgga gcgctggttg aagaagatcg cgtcaaaatt ctggcaatga ttcaggagca
    17881 ggtgacatgg cttgccggca gtttcctgct gaccggacat gagattgaaa atctgaacga
    17941 gaatctggcc cgtgttatcg atcagaatgc tctggagatc attttcgccg ccggtataca
    18001 acaacgggcc gcgaccaata tgttaatcaa accactggtg gtcagtatca tcaggcaacg
    18061 ccccgtcatg gaatatgatg catcccatct cggcaatatg gttaaccgac tggaagaagc
    18121 attccccccg gagttaccgg cataacggct attctgcgcc ttttacgttt tatcacctga
    18181 tttgtcagtg tcatcgtcat gactcagaga ggtaaatacc atgattcacc tgttcaaaac
    18241 ctgcatgatt accgccttca ttctggggtt aacgtggtct gccccactcc gggcacagga
    18301 tcaacgttac atcagtatac gcaatacaga tacgatatgg ctcccgggaa atatttgtgc
    18361 ctaccagttc cggctggata atggcggaaa cgatgaagga tttggccccc tcaccatcac
    18421 tctgcaactc aaagacaaat atggtcagac gctggtgacc agaaaaatgg aaacggaagc
    18481 ctttggtgac agtaatgcca cgcgaaccac agacgcattt ctggaaacgg agtgcgtgga
    18541 aaatgtcgcc acaaccgaaa tcattaaagc aactgaagaa agtaacggcc atcatgtcag
    18601 tctgccgtta tcggttttcg atccccagga ctaccatcca ctgctgatta ccgtttccgg
    18661 aaaaaacgtt aactgatccc tgaagtcagt ttcatgcttc agcctctgtc acaacgcgtg
    18721 gcagaggctt tttatttatc aggagaaaac agatatgccg ggttacacag agtatgtcct
    18781 ggctgaagga tctttctcat acgggcaggc ggttgctgtc ataaccgctt accgcaatgt
    18841 gtttatccag gatgacccgg gaatgcattt tcgtcgggtt atccgcaacg cggaaggtca
    18901 gcgacgctga cgcagccgga actctgaagc tgatgccgga aaacagctta atgcgtggct
    18961 cgccagtgga gggcttctca gacaataaac ctcattgatt tcatccatca ggccgcgtct
    19021 tctccgggag acgcggcttt tttcatttat tacaccagta aatcttaacc accgataagg
    19081 agcaaagtat gcgattagcc agtcgttttg gttatgctgc aaaccagata cgtcgtgacc
    19141 gcccactgac acatgaagag ctgatgcacc atgtgccggg gattttcggg gaagataaac
    19201 acacgtcccg aagccagaac tatacgtaca tccccactat caccgtactg gaaagcctgc
    19261 agcgggaagg ttttcagccc tttttcgcct gccagacccg tgtgcgcgac ccgggccgcc
    19321 ggggatacac aaaacacatg ctgcgtctgc ggcgggccgg agagataaac ggagaacatg
    19381 tccctgaaat tattctgctc aactctcatg acggtacctc cagctaccag atgctgccgg
    19441 gttacttcag gttcgtctgc cagaacggat gcgtctgtgg tcagtctctg ggggaagtgc
    19501 gtgttccgca ccggggaaat gtggtggaca gagtcattga aggggcttac gaggtggtgg
    19561 gcgtgtttga ccggattgag gaaaagcgtg atgccatgca gtcgctgatt ctgccgccac
    19621 cggcacgcca ggcgctggca caggcggcac tgacttaccg ttatggtgac gaacatcagc
    19681 ccgtcaccac cgccgacatt ctgacgccac gacgccggga ggattacggt aaggacctgt
    19741 ggagtgctta tcagaccatt caggagaata tgctgaaagg cggaatttca ggtcgcagcg
    19801 ctaaaggaaa acgtatccat acccgtgcca ttcacagcat tgacactgac attaagctca
    19861 accgcgcatt gtgggtgatg gcggaaaccc tgctggagag cctgcgctga ttcagccatt
    19921 accctgaaaa ccacgcattt atttgtcctt taaggagtca tttcatgaaa accatttcac
    19981 ataattccac cacatcttct gtttccgtaa ccgctgcatc agggaatgac cagcctcagt
    20041 tggttgccac cctcgtccct gatgaacagc gcatcagctt ctggccgcag cactttggcc
    20101 tcattccaca gtgggtgacc ctggagcccc gtgtcttcgg ctggatggac cgtctgtgtg
    20161 aagactactg cggtggtatc tggaatctgt acaccctgaa caacggcggg gcatttatgg
    20221 cacccgaacc ggatgacgat gatgacgaaa catgggtact gttcaatgcc atgaacggta
    20281 accgcgctga aatgagtccg gaagctgccg gcattgctgc ctgtctgatg acgtacagtc
    20341 atcatgcctg tcgtacggag tgttatgcca tgacggtcca ttattaccgg ctgcgggatt
    20401 acgccctgca gcatccggaa tgcagcgcca ttatgcgcat catcgactga atggagagaa
    20461 gtacaatgca acagctttcc tttctgcccg gagagatgac acccggtgag cgcagcctca
    20521 ttcaacgggc cctgaaaacc ctgggccgcc atcttcatga acccggcgtg gccttcacct
    20581 ccacgcatgc ggcacgggaa tggctgattc tgaacatggc gggactggag cgtgaagagt
    20641 tccgggtgct gtatctgaac aaccagaatc agctgattgc cggtgaaacc ctcttcaccg
    20701 gcaccatcaa ccgtacggaa gtccatcccc gggaagtgat taaacgcgcc ctgtaccaca
    20761 atgccgctgc cgtggtgctg gcgcacaatc acccgtccgg tgaagtcacc cccagcaagg
    20821 cagaccgcct tatcactgag cgtctggtac aggcactggc cctggttgat atccgggtac
    20881 cggaccatct gatagtcggt ggcagccagg ttttctcctt tgccgaacac ggtctgcttt
    20941 aacccgtcac cgtcacaatc accttcatat cacttcagtt tctctttctc agctgtttct
    21001 tactttcaca ttcaggagga ctattctcat gaaaatcatc acccgtggtg aagccatgcg
    21061 tattcaccgt cagcatcctg catcccgtct ttttccgttc tgtaccggta aataccgctg
    21121 gcacggtagt gctgaagcgt ataccggtcg tgaagtgcag gatattcccg gtgtgctggc
    21181 cgtgtttgca gaacgccgta aggacagttt tggtccgtat gtccggctga tgagcgtcac
    21241 cctgaactga tgttccgtca cccggaaaac gagtacgact ggctgagctc agacgccgct
    21301 gtggatgagg tcctgctcat caacgaatac acctttaccg aagccggtct gcgcgccggc
    21361 tgacccgtca tcgttaaact atcattcacc gattttctgt gaggatttta tcgtgtcaga
    21421 cacactttcc gggacaacgc atcccgatga caatgacgac catccctggt ggggactacc
    21481 ctgcacagtg acgccctgtt tcggcgcccg tctggtgcag gagggtaacc gcctgcatta
    21541 ccttgccgac cgcgccggta tcagaggcct gttcagcgat gcagatgcgt accacctgga
    21601 ccaggccttt ccgctactga tgaaacaact ggaactcatg ctcaccagcg gtgaactgaa
    21661 tccccgccat cagcataccg tcacgctgta tgcaaaaggt ctgacctgca aagctgacac
    21721 tctcggtagc ggtggttacg tttatctggc tgtttatccg acgcccgaaa cgaaaaagta
    21781 aaccaccgga ataaccttct gctccggcct ggtgctttca ccacgccact tttccatttt
    21841 tcatctctgc atatcaggaa aaccttcagt atgaaaacat tacccgatac acacgtacgg
    21901 gaggcatcga gctgcccgtc tcccgtcacc atctggcaga ctctgctctc ccgactactg
    21961 ggccagcatt acggccttac actgaatgac acaccgttcg ccgatgaacg tgtgattgag
    22021 cagcatattg aagctggcat ttcactgtgt gatgcggtga attttctcgt ggaaaaatac
    22081 gcgctggtgc gtaccgacca gccgggattc agcacttgtc cccgctctca gttaataaac
    22141 agtattgata tcctccgggc tcgccgggcg accggcctga tgacccgcga caattacaga
    22201 acggtaaata acattaccct gggtaagcat ccggagaaac gatgaaactt tccctgatgc
    22261 tggaagccga cagaattaat gtgcaggcac tgaacatggg gcgaattatc gttgacgtcg
    22321 atggtgttaa tctcactgaa ctgattaaca aggtcgctga aaacggttat tcactccgcg
    22381 tggtggagga atccgaccaa cagtcaacct gcacactacc accgtttgca acccttgccg
    22441 gcatacgctg cagtaccgca catatcacgg aaaaggataa cgcctggctg tactcgctgt
    22501 cgcatcagac cagtgacgtt ggtgaatcag aatggattca tttcacaggt agcggatatc
    22561 tgttacgtac cgatgcgtgg tcatatccgg ttctgcggct taaacgcctg gggctgtcaa
    22621 aaacgttccg tcgtctggtt atcacgctta cccgacgtta tggcgtcagt ctcattcatc
    22681 tggatgccag cgctgaatgc ctgccgggtt tacccacttt caactggtaa ccaggaacaa
    22741 catgaaatca ttaaccacgg aaaccgcact ggatattctg attgcgtggc tgcaggacaa
    22801 tatcgactgc gaatcgggaa ttatctttga caacaatgag gataaaacgg attcagcagc
    22861 actgttgccc tgtatcgaac aggccagaga agatatccgt accctgcgcc aactgcagct
    22921 tcagcaccag aaccggtgag tcttactcac cagacttcat tccactgacg ccagcctgaa
    22981 cagggctggc attttcattt atctgcaaaa aggaatatcg attatgtctg atatcacagc
    23041 ctaccgtccg gaagtggtca acgagaatac ggacgttatc tgctcaacca gcatccgccg
    23101 cattctggct gtacgaaaga gttcactgct gcaaatcgac acaattatcc ggcatcaagt
    23161 gagcgatatc agttaacaga tatagatgga gaagatgctt ttatccggat tggttctatc
    23221 gcgatggtgc gagtactact tgatgcaatg aagcctgtcg aggaagatga cgagtaacag
    23281 agctcggtat ctcaatcagg agctgattgt cctggttcga tgccgaaaac cagtgatttt
    23341 tcgtgttggt atctgtgttg gtataagatg atattgttta ttattaacaa ttttaaatca
    23401 tgaggttaag tcacatgttt gagtccggcc ttcgcaccac accgtatgca aatcgagtcg
    23461 ctcaagagcg gctttttttg tgtctgaaat cacccatatc cgtgcagtat ataggcctgc
    23521 cagaaaagca gttcagtatt cttcattttg tagtcgatgg tcccaagttt gctctggctg
    23581 gaagctgcat cgtccacatt acgtgggcag ggtggtttcg ctatgctact tgaacgtttt
    23641 gaccatgtgg ctcaggtagc taataccaaa agacgtcatt ttgtctccac gcccaccttg
    23701 gtgaacattc aataaatagt ttcggtcgag agcagttatg tagggctagc agacgagatg
    23761 cgcagacatc ttgttgaaga caattttact gaccacctga gaacgctatt ctaccgaata
    23821 atatttatta tcttggcgaa taatgatgat tacctgtgta actatggttt tatgctgatg
    23881 ggaccggcag tacaatttct gtagtgtact cgcaatttca ggtctctggc gtttattctg
    23941 gtgcaa
//
LOCUS       DADMJB010000049        23495 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.049, whole genome shotgun sequence.
ACCESSION   DADMJB010000049 DADMJB010000000
VERSION     DADMJB010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 23495)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23495)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23495
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.049"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(299..613)
                     /gene="pspE"
                     /locus_tag="JN078_001756"
     CDS             complement(299..613)
                     /gene="pspE"
                     /locus_tag="JN078_001756"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase PspE"
                     /protein_id="HAY9040993.1"
                     /translation="MFKKGLLALALVFSLPVFAAEHWIDVRVPEQYQQEHVQGAINIP
                     LKEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLKDIAMPKV
                     KG"
     gene            complement(688..909)
                     /gene="pspD"
                     /locus_tag="JN078_001757"
     CDS             complement(688..909)
                     /gene="pspD"
                     /locus_tag="JN078_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein PspD"
                     /protein_id="HAY9040994.1"
                     /translation="MNTRWQQAGQKVKPGFKLAGKLVLLTALRYGPAGVAGWAIKSVA
                     RRPLKMLLAVALEPLLSRAANKLAQRYKR"
     gene            complement(918..1277)
                     /gene="pspC"
                     /locus_tag="JN078_001758"
     CDS             complement(918..1277)
                     /gene="pspC"
                     /locus_tag="JN078_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response membrane protein PspC"
                     /protein_id="HAY9040995.1"
                     /translation="MAGINLNKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLS
                     IFFGLALFTLVAYIILSFALDPMPDNMAFGEQLPSSSELLDEVDRELAASETRLREME
                     RYVTSDTFTLRSRFRQL"
     gene            complement(1277..1501)
                     /gene="pspB"
                     /locus_tag="JN078_001759"
     CDS             complement(1277..1501)
                     /gene="pspB"
                     /locus_tag="JN078_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response membrane protein PspB"
                     /protein_id="HAY9040996.1"
                     /translation="MSALFLAIPLTIFVLFVLPIWLWLHYSNRSGRSELSQSEQQRLA
                     QLADEAKRMRERIQALESILDAEHPNWRDR"
     gene            complement(1555..2223)
                     /gene="pspA"
                     /locus_tag="JN078_001760"
     CDS             complement(1555..2223)
                     /gene="pspA"
                     /locus_tag="JN078_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein PspA"
                     /protein_id="HAY9040997.1"
                     /translation="MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVR
                     STSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIK
                     SLEHEVTLVDDTLARMKKESGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGK
                     LDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAELKADDAISEQLAQLKAKMK
                     QDNQ"
     gene            2390..3367
                     /gene="pspF"
                     /locus_tag="JN078_001761"
     CDS             2390..3367
                     /gene="pspF"
                     /locus_tag="JN078_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309907.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein operon transcriptional
                     activator"
                     /protein_id="HAY9040998.1"
                     /translation="MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKEL
                     IASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGG
                     TLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPATVNEGT
                     FRADLLDRLAFDVVQLPPLRERESDIMLMAEHFAIQMCREIKLPLFPGFTERARETLL
                     NYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLP
                     LDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI"
     gene            complement(3487..4752)
                     /gene="puuE"
                     /locus_tag="JN078_001762"
     CDS             complement(3487..4752)
                     /gene="puuE"
                     /locus_tag="JN078_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-aminobutyrate transaminase"
                     /protein_id="HAY9040999.1"
                     /translation="MSNNEFHQRRLSATPRGVGVMCNFFAQSAENATLKDVEGNEYID
                     FAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQA
                     KTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGP
                     FPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPK
                     ELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGGMPLS
                     GVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTL
                     IDAKESVPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYG
                     NVIRFLYPLTIPDAQFDAAMKILQDALSD"
     gene            complement(4790..6022)
                     /locus_tag="JN078_001763"
     CDS             complement(4790..6022)
                     /locus_tag="JN078_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004984233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HAY9041000.1"
                     /translation="MPFDTLNESITCDVCVVGGGYTGLSSALHLAEAGFDVVVLEASR
                     IGFGASGRNGGQLVNSYNRDIDVIEKSYGMDTAPMLGSMMFEGGEIIRERIKRYQIDC
                     DYRPGSLFVAMNDKQLATLEEQKENWERYGNKQLELLDANAIRREVASDRYTGALLDH
                     SGGHIHPLNLAIGEADAIRLNGGRVYELSAVTQIQHTTPAVVRTAKGQVTAKYVIVAG
                     NAYLGDKVEPELAKRSMPCGTQVITTERLSEDLARSLIPKNYCVEDCNYLLDYYRLTA
                     DNRLLYGGGVVYGARDPDDVERLVVPKLLKTFPQLKGVKIDYRWTGNFLLTLSRMPQF
                     GRLDTNIYYMQGYSGHGVTCTHLAGRLIAELLRGDAERFDAFANLPHYPFPGGRTLRV
                     PFTAMGAAYYSLRDRLGV"
     gene            complement(6061..7548)
                     /gene="puuC"
                     /locus_tag="JN078_001764"
                     /pseudo
     CDS             complement(6061..7548)
                     /gene="puuC"
                     /locus_tag="JN078_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415816.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase PuuC"
     gene            complement(7823..8380)
                     /gene="puuR"
                     /locus_tag="JN078_001765"
     CDS             complement(7823..8380)
                     /gene="puuR"
                     /locus_tag="JN078_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001464354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator PuuR"
                     /protein_id="HAY9041001.1"
                     /translation="MSDEGLAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDK
                     VSPAISTLQKLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLVHNGN
                     PNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINT
                     GIPHSFSNTSAGICRIISAHTPTTF"
     gene            complement(8407..9170)
                     /gene="puuD"
                     /locus_tag="JN078_001766"
                     /pseudo
     CDS             complement(8407..9170)
                     /gene="puuD"
                     /locus_tag="JN078_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415814.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase"
     gene            9382..10800
                     /locus_tag="JN078_001767"
     CDS             9382..10800
                     /locus_tag="JN078_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309901.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase"
                     /protein_id="HAY9041002.1"
                     /translation="METNIVEVENFVQQPEERRGSAFTQEVKRYLERYPNTQYVDVLL
                     TDLNGCFRGKRIPVSSLKKLEKGCYFPASVFAMDILGNVVEEAGLGQEMGEPDRTCVP
                     VLGSLTPSAADPEFIGQMLLTMVDEDGAPFDVEPRNVLNRLWQQLRQRGLFPVVAVEL
                     EFYLLDRQRDAEGYLQPPCAPGTDNRNTQSQVYSVDNLNHFADVLNDIDELAQLQLIP
                     ADGAVAEASPGQFEINLYHTDNVLEACDDALALKLLVRLMAEKHKMHSTFMAKPYEEH
                     AGSGMHIHISMQNNRGENVLSDTEGEDSPLLKKMLAGMIDLMPSSMALLALNVNSYRR
                     FQPGMYVPTQASWGHNNRTVALRIPCGDRHNHRVEYRVAGADANPYLVMAAIFAGILH
                     GLDNELPLQEEVEGNGLEQEGLPFPIRQSDALGEFIENDHLRRYLGERFCHVYHACKN
                     DELLQFERLITETEIEWMLKNA"
     gene            10949..11114
                     /locus_tag="JN078_001768"
                     /pseudo
     CDS             10949..11114
                     /locus_tag="JN078_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518772.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            11104..12489
                     /gene="puuP"
                     /locus_tag="JN078_001769"
     CDS             11104..12489
                     /gene="puuP"
                     /locus_tag="JN078_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415812.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine/proton symporter PuuP"
                     /protein_id="HAY9041003.1"
                     /translation="MAINSPLNIAAQPGKTRLRKSLKLWQVVMMGLAYLTPMTVFDTF
                     GIVSGISDGHVPASYLLALAGVLFTAISYGKLVRQFPEAGSAYTYAQKSINPHVGFMV
                     GWSSLLDYLFLPMINVLLAKIYLSALFPEVPPWVWVVTFVAILTAANLKSINLVANFN
                     TLFVLVQISIMVVFIFLVVQGLHKGEGVGTVWSLQPFISENAHLIPIITGATIVCFSF
                     LGFDAVTTLSEETPDAARVIPKAIFLTAVYGGVIFIAASFFMQLFFPDISRFKDPDAA
                     LPEIALYVGGKLFQSIFLCTTFVNTLASGLASHASVSRLLYVMGRDNVFPERVFGYVH
                     PKWRTPALNVIMVGIVALSALFFDLVTATALINFGALVAFTFVNLSVFNHFWRRKGMN
                     KSWKDHFHYLLMPLVGALTVGVLWVNLESTSLTLGLVWASLGGAYLWYLIRRYRKVPL
                     YDGDRTPVSET"
     gene            12623..12868
                     /locus_tag="JN078_001770"
     CDS             12623..12868
                     /locus_tag="JN078_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmjA family protein"
                     /protein_id="HAY9041004.1"
                     /translation="MNHDIPLKYFDIADEYATECAEPVADAERTPLAHYFQLLLTRLM
                     NNEEISEEAQHEMAAEAGINPVRIDEIAEFLNQWGNE"
     gene            13181..14824
                     /gene="sapA"
                     /locus_tag="JN078_001771"
     CDS             13181..14824
                     /gene="sapA"
                     /locus_tag="JN078_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein SapA"
                     /protein_id="HAY9041005.1"
                     /translation="MRQVLSSLLVIAGLVSGQAIAAPESPPHADIRDSGFVYCVSGQV
                     NTFNPSKASSGLIVDTLAAQFYDRLLDVDPYTYRLMPELAESWEVLDNGATYRFHLRR
                     DVPFQKTDWFTPTRKMNADDVVFTFQRIFDRNNPWHNVNGSNFPYFDSLQFADNVKSV
                     RKLDNHTVEFRLAQPDASFLWHLATHYASVMSAEYARKLEKEDRQEQLDRQPVGTGPY
                     QLSEYRAGQFIRLQRHDDFWRGKPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPAAS
                     QLSILRDDPRLRLTLRPGMNVAYLAFNTAKPPLNNPAVRHALALAINNQRLMQSIYYG
                     TAETAASILPRASWAYDNEAKITEYNPAKSREQLKALGLENLTLKLWVPTRSQAWNPS
                     PLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMSHDLTLSGWATDSNDPDSFFRP
                     LLSCAAIHSQTNLAHWCDPKFDSVLRKALSSQQLAARIEAYDEAQSILAQELPILPLA
                     SSLRLQAYRYDIKGLVLSPFGNASFAGVYREKQDEVKKP"
     gene            14821..15786
                     /gene="sapB"
                     /locus_tag="JN078_001772"
     CDS             14821..15786
                     /gene="sapB"
                     /locus_tag="JN078_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter permease SapB"
                     /protein_id="HAY9041006.1"
                     /translation="MIIFTLRRILLLIVTLFLLTFVGFSLSYFTPHAPLQGASLWNAW
                     VFWFNGLIHWDFGVSSINGQPIAEQLKEVFPATMELCILAFGFALIVGIPVGMIAGIT
                     RHKWQDNLINAIALLGFSIPVFWLALLLTLFCSLTLGWLPVSGRFDLLYEVKPITGFA
                     LIDAWLSDSPWRDEMIMSAIRHMILPVITLSVAPTTEVIRLMRISTIEVYDQNYVKAA
                     ATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAI
                     RQQDYAAISAGVMVCGSLVIIVNVISDILGAMANPLKHKEWYALR"
     gene            15773..16663
                     /gene="sapC"
                     /locus_tag="JN078_001773"
     CDS             15773..16663
                     /gene="sapC"
                     /locus_tag="JN078_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter permease SapC"
                     /protein_id="HAY9041007.1"
                     /translation="MPYDSVYSEKRPPGTLRTAWRKFYSDASAMVGLYGCAGLAVLCI
                     FGGWFAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGTDDLGRDVLSRLLSGAAPTVGGA
                     FVVTLAATICGLVLGTFAGATHGLRSAVLNHILDTLLAIPSLLLAIIVVAFAGPSLSH
                     AMFAVWLALLPRMVRSIYSMVHDELEKEYVIAARLDGASTLNILWFAVMPNITAGLVT
                     EITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMIS
                     VLLVNLLGDGVRRAIIAGVE"
     gene            16663..17655
                     /gene="sapD"
                     /locus_tag="JN078_001774"
     CDS             16663..17655
                     /gene="sapD"
                     /locus_tag="JN078_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein
                     SapD"
                     /protein_id="HAY9041008.1"
                     /translation="MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGS
                     GKSLIAKAICGVNKDNWRVIADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQSCL
                     DPSERVGRQLMQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT
                     EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHD
                     LQMLSQWADKINVLYCGQTVETAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLN
                     TLPGAIPLLEQLPIGCRLGPRCPYAQRECIVTPRLTGAKNHLYACHFPLNMEKE"
     gene            17657..18463
                     /gene="sapF"
                     /locus_tag="JN078_001775"
     CDS             17657..18463
                     /gene="sapF"
                     /locus_tag="JN078_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein
                     SapF"
                     /protein_id="HAY9041009.1"
                     /translation="MIETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLA
                     IIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSFRSQRIRMIFQDPSTSLN
                     PRQRISQILDFPLRLNTDLEPEQRRKQIIETMRMVGLLPDHVSYYPHMLAPGQKQRLG
                     LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHIS
                     DQVLVMHQGEVVERGSTADVLASPLHELTKRLIAGHFGEALTADAWRKDR"
     gene            18531..18884
                     /locus_tag="JN078_001776"
     CDS             18531..18884
                     /locus_tag="JN078_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF559 domain-containing protein"
                     /protein_id="HAY9041010.1"
                     /translation="MMDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVG
                     SYILDFACCSARVVVELDGGQHDLAVAYDTRRTSWLESQGWTVLRFWNNEIDCNEEAV
                     LEIILQELNRRSPSP"
     gene            19252..20040
                     /gene="fabI"
                     /locus_tag="JN078_001777"
     CDS             19252..20040
                     /gene="fabI"
                     /locus_tag="JN078_001777"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HAY9041011.1"
                     /translation="MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL
                     KGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDG
                     DYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMG
                     LAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRR
                     TVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIAAMNELELK"
     gene            20185..21312
                     /locus_tag="JN078_001778"
     CDS             20185..21312
                     /locus_tag="JN078_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309887.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMD domain-containing protein"
                     /protein_id="HAY9041012.1"
                     /translation="MEQRHITGKSHWYHETQSSTAEYDVLPLVPEAAKVSDPFLLDVI
                     LDEETLAPFLSWLVPARVLAVELFPDQLTVTRSQTFTAYERLSTALTVAQVCGVQRLC
                     NYYSARLTPLPGPDSSRESNHRLAQITQYARQLASSPSIIDNRSRQHLNDVGLTARDC
                     VIINQIIGFIGFQARTIATFQAYLGHPVRWLPGLEIQNYADASLFADESIRWRSSYEV
                     EKLPEEYTKSSTAELCQLAETLSLHPISLSLLERLLNSTRVNTQPDNKLAALLCARIN
                     GSPACFAACMDSSNEYKKISPLLRKGENEINQWADRHSVEHATVQAIQWLTRAPDRFS
                     TAQFSPLLEHEQSSTQIINLLVWSGLCGWINRLKIALGETY"
     gene            21380..23314
                     /gene="rnb"
                     /locus_tag="JN078_001779"
     CDS             21380..23314
                     /gene="rnb"
                     /locus_tag="JN078_001779"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exoribonuclease II"
                     /protein_id="HAY9041013.1"
                     /translation="MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSY
                     FIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPD
                     HPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVP
                     WWVTLARHNLEKEAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALP
                     DDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN
                     EVRPVLACRMTLSADGAIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIA
                     EQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEA
                     MIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFC
                     KLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINH
                     RLLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAA
                     EIVDISRGGMRVRLVDNGAIAFIPAPFLHAMRDELVCSQENGTVQIKGETVYKVTDVI
                     DVTIAEVRMETRSIIARPVA"
     gene            complement(23392..23495)
                     /locus_tag="JN078_001780"
                     /pseudo
     CDS             complement(23392..23495)
                     /locus_tag="JN078_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791239.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         5309 a         6207 c         6117 g         5862 t
ORIGIN      
        1 aagacgcgtt acaagtttct gtaaatgagt tgcggtaaat gttccaccgt agatttcgtc
       61 caggtaatca gtaattttct gtttcatgtt gcctttcagt ggtagcgatc ccatgaaacg
      121 agagactact ccgcagaaaa taaactgtca attgagcaca agggttttag tcacgcagga
      181 aatcattttt taccagggaa aaagcgtatt tgtgagctga cgcaaataat ctatggggat
      241 gtaaataagg tgtgacagaa aaaaaacggc gcataagcgc cgctcatggt gaattctttt
      301 aacctttgac cttcggcatt gcgatgtctt tcaagccacc ggcgttctca acgtgggtat
      361 atcccatctc gctaaggatc tcttttgctt gccctgactg gcgtccggca ttgcaataca
      421 ctttcacggt gtcgttttta tccggaacgg cggtggcaat gcgctctttc acttccttca
      481 ggggaatatt gatggccccc tgaacgtgct cttgctgata ctgctctgga acacgaacat
      541 cgatccagtg ttcagcggcg aaaacgggca gtgaaaacac cagtgccaga gcaagtaagc
      601 cttttttaaa catgtaagcg tccttctatg gatgaaaatt gccatccatt atacgcctga
      661 gatttaacaa tttttgcgaa actcccctca ccttttataa cgctgtgcca gtttattagc
      721 agcccgactt aacagcggtt ccagcgccac agccagcaac attttcagcg gtcggcgagc
      781 aactgatttt atcgcccagc ccgctacacc cgccgggcca tagcgcagtg cggtaagaag
      841 taccagcttg cctgctaatt tgaaaccagg ctttaccttt tgcccggcct gttgccagcg
      901 agtattcata actttcctca cagttgacgg aaacggctac gtaacgtgaa agtatcggaa
      961 gtgacataac gttccatctc gcgtaaacgc gtttcacttg ccgccagttc acggtcgact
     1021 tcatccagca attcgctgct ggagggtagc tgctcaccaa aggccatgtt gtccggcatt
     1081 ggatcaagcg caaatgacaa aatgatgtaa gcaaccaggg taaacagcgc cagaccgaag
     1141 aaaatcgaca gcaccaccag gatacgcacc agttttaccg gtacatcaaa atagttggca
     1201 atcccggcgc agacgccgcg gaccatgccc tgctgtggaa tacgccataa ttttttattg
     1261 agattaatgc ccgccattag cgatccctcc agttcggatg ttctgcatca agaatagatt
     1321 ccagcgcctg aatacgttcg cgcatccgtt ttgcttcatc agccagttgc gctaatcgct
     1381 gctgctcact ttgcgacaat tcactgcgac cagaacgatt gctgtaatgc agccataacc
     1441 agatcggtaa aacaaacagc acaaaaatgg ttaacggaat agccagaaat agcgcgctca
     1501 taagtactcc ttagacgatg agcggcggcg cgttcggacg ccgcctagat gttattattg
     1561 attgtcttgc ttcattttgg cttttaattg tgccagttgt tcgctgattg catcatcggc
     1621 tttcagttcg gcaaactgat cgtccagcga tttttgttta ccgaagctgt ggctttctgc
     1681 ttccgcttcc atctggtcaa tacgacgttc gaaagattcg aaacgagcca ttgcttcatc
     1741 cagtttgcca ctgtccagct gacgacgcac atcgcgcgac gagtttgccg cctgatggcg
     1801 taacatcaat gcctgctggc gagcgcgtgt ttcgctcaat ttgttttcca gctcaccgct
     1861 ctctttcttc atgcgtgcca gcgtatcgtc caccagcgtc acttcatgtt ccagactctt
     1921 aatcagatcg gtcagtttct gtttttcaat taacgccgca cgtgccaaat cctctctctc
     1981 tttcagcagc gccagttcgg ctttttcctg ccattcaact tcacgcgccg acgcttgttc
     2041 aatacggcga gtcagctgtt tcttttctgc caacgcacgc gccgaagtag aacgtacttc
     2101 aaccagtgta tcttccatct cctggatcat cagacgcacc agtttctgtg gatcttccgc
     2161 tttctctaac agagcgttga tgttggcatt cacgatgtcg gcaaagcgag aaaaaatacc
     2221 cataatgttg tcctcttgat ttctgcgttc aggattgtcc tgctgaactg ttaatacaat
     2281 ttgcgtgcca attttttatc tttttgattt ataaagatct gattgaagaa tcatcagcaa
     2341 catgccagga tgaattagcg aattacacta acaagtggcg aatttcatca tggcagaata
     2401 caaagataat ttacttggtg aggcgaacag ctttctcgaa gtgctggaac aggtttcgca
     2461 tctcgcaccg ctggacaaac cggtgctcat catcggcgaa cgcggcaccg gtaaagagct
     2521 gattgccagc cgcctgcatt atctctcctc ccgttggcaa gggccgttta tttcccttaa
     2581 ctgcgcggcg ttaaatgaaa atctgctgga ttccgaactg tttggtcacg aagcgggggc
     2641 gtttaccggt gcgcaaaaac gtcatccagg gagatttgaa cgtgccgacg gcggtacgct
     2701 atttcttgat gaactcgcta cggcaccgat gatggtgcag gagaaattat tgcgcgtgat
     2761 tgagtacggt gaactggagc gcgttggcgg cagccagcca ttgcaggtga atgtgcggtt
     2821 ggtatgcgcg acgaatgccg atctcccggc gacggtcaat gaaggcactt ttcgcgctga
     2881 cctgctcgac cgactggctt ttgatgttgt acaactgcca ccactgcgcg agcgcgaaag
     2941 cgacataatg ttgatggcag aacactttgc catccagatg tgtcgggaaa tcaagctgcc
     3001 tctgttcccg gggtttacgg agcgcgccag agaaacattg ctgaattatc gttggccggg
     3061 aaatattcgt gaattgaaaa acgtggtgga acgttcagtg tatcgccacg gcaccagcga
     3121 ttatccgctt gatgacatca ttattgatcc ctttaaacgg cgtccgcctg aagacgctat
     3181 cgccgtttca gaaaccacct cgcttccaac actgccgctg gatttacgtg agtttcagat
     3241 gcagcaggaa aaagagttgc tgcaactcag tttgcaacaa gggaaatata accagaagcg
     3301 cgcggctgaa ttactggggt taacttatca tcagttccgc gcgttgttga aaaagcacca
     3361 gatttagcga agttgagcaa tacaacttgc cggatgcggc gtgaatgctt tattcggcat
     3421 acataatcaa taagtcgttt gcaggcctga taagcgcagc gcatcagaca ttattgcgtt
     3481 gggctattaa tcgctcagcg catcctgcaa aattttcatt gccgcatcga attgcgcatc
     3541 cggaatggtc agcggataca ggaagcgaat cacgttgccg tatgcgccac aggtcagcag
     3601 gagcagcccc tgcgccagcg cgcgttgctg gattttctgt gcaatcgccg ctgacggctc
     3661 gcccgtttgc ggatcgttaa actctgccgc aatcatcgac cccaggccgc gtaccgcagc
     3721 aatggccgga acgctttctt tggcatcaat caacgtgttt ttgagacgct ggcccagttg
     3781 attcgcgcgt tcgcagagtg attctttgtc gataatattg agcaccgcgt gcgcggcagc
     3841 caccgccagc gggttcccgg cgtaggtgcc acccaacccg cccggcgcgg gcgcgtccat
     3901 aatattcgcg ttaccgacca cgcccgaaag cggcatcccg cccgcgaggc ttttcgccat
     3961 cgtcattaag tccggcttat cggcgtaatg atccatggca aacagtttac cggtacgcgc
     4021 aaagccgctt tgcacttcat cggcaatcat cacaataccg tgctcgtcgc acaggcggcg
     4081 aatggcggca accagctctt ttggcgcaac gttgaaaccg ccctcgccct gcaccggttc
     4141 gaaaataatg gccgccacct gcttcgcttc aatgtccgat ttaaacaagc gttcgatggc
     4201 gtcgagggag tcctgtgttg aaatgccgtg taaatctgac ggataaggta cgtgatacac
     4261 cgaaccaggg aacgggccga agccgatttt gtacggcgca acttttccgg tcagcgccat
     4321 ggtcatatat gtacgaccgt ggaagccgcc gctaaacgca atcacgccag gtcgtccggt
     4381 atgggcgcga gcaattttca ccgcgttttc caccgcttcc gcgccggtag tgaagaatgc
     4441 ggttttagcc tgcccgctca ctggggcaag ggcgttaatt ttctccgcca gcgtgacgta
     4501 gctttcgtac ggcacaatct gatacgccgt gtgggtaaac tgttgcaatt gctgctccac
     4561 cgccgcgacc agatcagggt ggcgatgccc ggtattcagc accgcaatgc ctgcggcgaa
     4621 atcgatgtat tcgttgccct ctacgtcctt cagcgtagcg ttttctgccg actgggcgaa
     4681 gaagttacac atcacgccaa ccccgcgtgg ggtagcagaa agacgacgct gatggaattc
     4741 attgttgctc atgtttcaca ccttttgact cttcactgtt aatcggaaat taaacgccca
     4801 gacgatcgcg caggctgtaa taagccgcgc ccatcgcggt aaatggcacg cgcagcgtgc
     4861 gcccgccggg gaacgggtaa tgcggcagat tggcgaaggc atcgaaacgc tcggcgtcac
     4921 cgcgcagcag ttcagcaatc aaacgcccgg cgaggtgggt acaggtgacg ccgtggccgc
     4981 tgtagccctg catgtaatag atgttggtat cgaggcgacc gaactgcggc atccgtgaaa
     5041 gggtcagcag gaagttgccc gtccagcgat agtcgatttt gacgcccttc agctgcggga
     5101 aggttttcag cagtttcggc acaacaagac gctcaacgtc atccgggtcg cgcgcgccgt
     5161 agaccacgcc gccgccgtac agcaaacggt tgtcggcggt aagacggtag taatcaagca
     5221 gataattaca gtcttccaca cagtagtttt tcgggatcag cgaacgggct aaatcttccg
     5281 acagccgttc ggtggtgatc acctgcgtgc cgcacggcat gctgcgtttc gccagttccg
     5341 gctctacttt atcgcccaga tacgcattcc cggcgacaat cacatacttc gccgtcacct
     5401 gacctttggc agtgcgcaca acggctggcg tggtgtgctg gatctgcgtc acggcagaaa
     5461 gttcatacac gcgcccgccg ttgaggcgga tggcgtccgc ttcgccaatg gcgaggttta
     5521 gtgggtgaat atgcccaccg ctgtgatcca gcagcgcacc ggtatagcga tcgctggcta
     5581 cttcacggcg aatggcgttg gcgtccagca attccagctg tttattgccg tagcgttccc
     5641 agttctcttt ctgctcttca agtgtggcga gctgtttatc attcatcgcc acaaacaggc
     5701 tgccggggcg gtagtcgcag tcaatctgat aacgtttgat acgttcgcgg atgatctcac
     5761 caccttcgaa catcatgctg ccgagcatag gggcggtgtc catgccgtag cttttttcga
     5821 tcacgtcgat gtcgcggttg taggagttca caagctgccc gccattgcgc ccgcttgcgc
     5881 caaagccgat gcgtgaggct tcgagaacca ctacgtcaaa gcccgcttcc gccagatgca
     5941 gcgcggagga gagcccggta tagccgccgc caaccacgca aacgtcgcag gtgattgact
     6001 cattcagggt gtcgaatggc acgtatttat gcgtaataac tgctggtatg ttcggtcatt
     6061 tcaggcctcc aggcttatcc agatggtttt cagttcggtg aatttttcaa gggcatgcag
     6121 ggatttgtcg cgaccgttgc cgctctgctt atagccgcca aacggcacgg tcatatcgcc
     6181 gtcgttgtag ttattgacga agacggaacc ggctttcagg cggcggctca tacggtgcgc
     6241 gcgggagagg tcgcgcatcc ataccgccgc gccaaggccg tactggctgt cgttggcaag
     6301 ctgtagcgcc tgttcttctg atgtgaaacg cgtgaccacc agcaccggac cgaaaatctc
     6361 ttcgcggctt aaggacgcat tcgggtctac atccacaaag atggtcgggc cgatggcggc
     6421 agccagcccg gcgttacggc catccagcag cagttgccct ttgccttcgc cctcacgaat
     6481 aaagctatgg accgagtcgg cgtgggcgca gtcgattaaa gtgcccatgg tggttgcggg
     6541 gtcaagcgga tggcccggct gccagttttg cgcctgctgt tttaacaggg ctaagaattc
     6601 atcggcgatg ctctcttcca gcaacaggcg tgttccggcg atgcacacct gaccctggtt
     6661 gtagaagatg cctgctgcgg tggagctcgc cgctttttgc agatccgaac aatcggagaa
     6721 aacgatgttg gcgcttttgc cgcccgcttc cagccagacg cgtttcatgt tgctgtcgcc
     6781 cgcatctttc agcagctgtt tcccggtacg ggttgaaccg gtaaaggcaa tggcgtcgat
     6841 atcgttatga cgcgacagcg cctgccccgc ttcatgacca aaacccgtca ccacgttcaa
     6901 cacaccatcc ggcaagcctg cttctttcgc cagccccacg agacgaatcg cactgagcgg
     6961 tgatttttca gacggtttta gaatcacgct gtttcccgcc gccagcgccg ggccgagttt
     7021 ccagcaagtc agcaacagcg ggaagttcca cggcacgatg gcggcaatca cgccgaccgg
     7081 ttcacgcacg atcatcgcca gctcatggct actggtggtc gccacttcgc catacacttt
     7141 gtcgatcgct tcggcgtacc agcgaatggc gcgcgccgcg ccgggaatat catcacgcag
     7201 actgtgacga atcggtttgc cggtgtcgag agtttccagc agtgccagct cttcggcgtg
     7261 ggcttccatt aaatcggcga gtttattcag taccgcttta cgtttagccg gagaagagag
     7321 tgaccagtcg ccgcgttcaa atacgccgcg tgctgcgctc accgcacggt cgatatcgac
     7381 gctcttgccg cgggcaattt tcgccagcgg tgcctaggtg actggatcaa cggtttcaaa
     7441 ggtttcattt tccgccgcag cagtatattc accgttaata aataagcggt tttcaatggc
     7501 gagacttaac gctttatcct gccagtaagc cagatgatga aaattcatta tgactcctgt
     7561 ttcacgtcta tcagatatat gcagtttgtg aacgtcaggg cgcagagatc cccgggccgt
     7621 atgcccgttt atttctggcg acattcttta tatacacttc atccttcaag ccgcctctgc
     7681 cttggctgcg ttcgctcccc cgaatcactt acctgagtaa gctcatcggg attcgctcac
     7741 ttgccgcctt gatgcaactt gaatgatttt gtgtatagat tgccgggcgc attgcgctta
     7801 cccggcttac agaacaaaaa gattaaaacg tggtgggcgt atgggcgctg ataattcggc
     7861 aaatacctgc cgacgtatta ctgaaactgt gcgggatgcc ggtattaatg gcataacttt
     7921 gacccgcgac gaggtggtaa tcctgaccat taatcgtcag aacaatttca ccttccagta
     7981 ctgtgcctat ttcctcaccc tgatgcttaa ttctttcccc agtggttgtg cccggctggt
     8041 acgtttcaaa gatcatcgcc agcgtgcgat tcgggttacc gttatgaacc agcttcattg
     8101 acacaccctg actgcccatc tcaattaagt cgtcctgatt aatgacgacc tgcggctcat
     8161 caggtttttc cggctcggaa aagaattccg agagtgacag accatacacc ttcagcagct
     8221 tttgcagcgt actgatggca gggctgactt tatcttgttc tatcgtactg atagcactgt
     8281 gagtcagccc ggagagttcg gcggcacgac gttgtgaaag cccctgctgc tggcggattt
     8341 ccgacaagcg ttttcctggc gccagtccct catcactcat atttgcattt ccttaaactg
     8401 tagtggtcag agtcgctgtt tttcagcgat atggtgctga caagcggtga taaagccctc
     8461 gaacaatata cgcgaaagag cgtactcgct actgttccat tccgggtgcc actgtacgcc
     8521 cagcgcaaaa ggatgattga tgacgctaac cgcctcaact aagccatccg gcgagcgagc
     8581 ttcaacacgc aaccgtgggc taacgacctt cgccccttgt ccatgtagag agtttaccca
     8641 aaagttgcta cattcaggta acaacgcaga cagtaatccc ccctcttcaa cctgaacttc
     8701 atgcgacggt gcatattgct gttccaccgg cagttcggat cttcccgatg ttccagcaat
     8761 tcaggctgtt cgcacagctt gcgatgcaac gaaccaccgg ttgccaccac cagttcttgt
     8821 aaaccccggc agatggcgaa aatggggatg cgcctttcga gtgcggcatt aattatcgcc
     8881 atgctcagaa gatcacgccc gggatcggcg tcaggctcat cgccgttttc accatatagg
     8941 tgcggctgca cattgctggg actaccagga agataaatgc catcgagttt cggcaaaagt
     9001 tgttcaagta acgacggttc cgccagcgca tgtggtagcg caattggcaa gccgcctgcg
     9061 tggatgatgg cattcaggta cttttcttgc agagtctggg tcgcatgacc cttaagcctg
     9121 ttcctgcaca ttacgacacc gataaccgga ttgttcatta tatttttcat gctcaatctc
     9181 acaaagtgga ctaaattatc gccattactg cgctttaaat gacctttatg ttcaatattt
     9241 tttcaatcta gcagtgggtt ttcatttttg caaactaaat ttaacatttg gcaaacattt
     9301 agtttgcata cagattcgaa tggtggtcat tatattttac gctttgataa cgagcggaaa
     9361 acaaaccaaa ggcgaagaat catggaaacc aatatcgttg aagtagagaa ctttgttcag
     9421 cagccagaag agaggcgggg tagcgccttt acgcaggaag tgaaacgcta cctggagcgc
     9481 tacccgaata cgcaatatgt tgatgtttta cttactgatt tgaatggttg cttccgtgga
     9541 aaacgtatcc ctgtttcaag cctgaagaag ttggagaaag ggtgttattt cccggcctcg
     9601 gtgtttgcaa tggatattct gggcaacgta gtagaagaag cgggtctggg tcaggaaatg
     9661 ggcgagccgg atcgtacttg tgttcctgtt ctcggttcct taaccccttc tgccgccgat
     9721 ccagagttta tcggtcagat gctcctgacc atggtcgatg aagatggcgc tccctttgac
     9781 gttgagccgc ggaacgttct taaccgcctg tggcagcagc tacgccagcg cggattgttc
     9841 ccggttgtag cggtagagct ggagttctat ttactggatc gtcagcgcga cgctgaaggg
     9901 tatctgcaac cgccctgcgc gcccggcacc gataaccgca atacacaaag ccaggtttac
     9961 tccgttgata acctcaacca cttcgccgac gtgctcaatg atattgatga actggcgcag
    10021 ttacagttaa ttcccgccga cggtgcggtc gccgaagcct cgccgggtca gtttgaaatc
    10081 aacctttacc ataccgataa cgtgctggaa gcctgcgatg atgcgctggc gctaaaactc
    10141 ctggtgcgtc tgatggcaga aaagcataag atgcactcca cttttatggc gaagccgtat
    10201 gaagagcacg cgggcagcgg gatgcatatc catatcagta tgcaaaataa tcgtggcgag
    10261 aatgtgcttt ctgacacaga aggcgaagat tcgccgctgc tgaaaaagat gctcgccggg
    10321 atgattgacc tgatgccgtc gtcgatggcg ttgctggcac taaacgtgaa ctcgtatcgc
    10381 cgcttccagc cgggaatgta tgtgccgacg caggcgtcgt ggggccataa caaccgcacc
    10441 gtcgccctgc gtattccgtg cggcgaccgt cataatcacc gcgtggaata tcgcgtggcg
    10501 ggtgccgatg ccaacccata tctggtgatg gcagcgattt ttgccggtat tttgcatggc
    10561 cttgataacg agctgccgtt gcaggaagaa gtcgaaggca acgggctgga acaggaaggc
    10621 ttacccttcc cgattcgcca gagcgatgcc ctgggtgagt ttatcgagaa tgatcacctg
    10681 cgccgctatt taggcgaacg gttttgccat gtgtatcacg cctgtaaaaa tgatgagctg
    10741 ttgcagtttg agcgcctcat cacagaaaca gaaattgagt ggatgttgaa aaacgcatag
    10801 taccccttgc ggggttgttt catcgacctg agcggagcca ggcctgacat ttgctggtaa
    10861 tccagacatt tcccggatgt cgcgttatgg agcgcaggcg gcaacgggct tccgttaacg
    10921 attaagactg tgacgaggaa atgagatgat gccgatgatt aaatccccgc atggcgaggg
    10981 aggctgcgta tgcgcccctc ctgctactga ctggactccg tcccctttgc ttcccttgct
    11041 aaacaggttt gatttcaggt cgacacgacc gcaaacctta ttacgcaggg ggaggcagca
    11101 attatggcta ttaattcacc actgaatatt gctgcgcaac ccggcaaaac ccgtctgcga
    11161 aaatcactga aattgtggca ggtggtgatg atgggtctgg cctatctcac gccgatgacc
    11221 gtatttgata cttttggtat tgtctccggc attagcgacg gtcacgttcc ggcgtcctat
    11281 ttgctggcgc tggcgggcgt gctgtttacc gctatcagct acggcaaact ggttcgccag
    11341 tttccggagg ccggttcggc ctatacctac gcgcaaaagt cgattaaccc gcacgtcgga
    11401 tttatggtcg gctggtcatc gctgctggat tatctctttt tgccgatgat caacgtcttg
    11461 ttggcgaaaa tctatctctc cgccctcttc ccggaagtgc cgccgtgggt gtgggtagta
    11521 accttcgtcg ccattttaac cgccgcgaat ctgaagagca tcaacctggt cgctaacttc
    11581 aataccctgt ttgtactggt gcaaatctcc atcatggtgg tgtttatctt cctggtagtt
    11641 cagggactgc ataaaggaga aggcgttggc accgtctggt cacttcagcc gtttatcagc
    11701 gagaacgcgc acctgatccc gattattacc ggggcgacga ttgtctgttt ctccttcctc
    11761 ggtttcgatg cggtgaccac gctttcggaa gagacgccgg acgccgcacg cgtgatcccg
    11821 aaagccatct tcctgacggc ggtctacggt ggcgttatct ttatcgcggc gtcgttcttt
    11881 atgcagctgt tctttcccga tatcagccgc tttaaagatc cggatgccgc actgcctgaa
    11941 attgcgctgt acgtcggcgg caagctcttc cagtcgattt tcctctgcac cacgtttgtg
    12001 aacacgttag cctctggcct ggcttcacat gccagcgtgt cgcgtctgct gtatgtgatg
    12061 gggcgtgaca atgtgtttcc ggagcgcgtg tttggctatg tgcacccaaa atggcggact
    12121 ccggcactca acgtcattat ggtcgggatt gtcgcgttgt cggcgctgtt cttcgattta
    12181 gttaccgcca cagcgttaat taacttcggt gctctggtgg cgtttacctt cgtgaatctg
    12241 tcggtgttta atcatttctg gcggcgtaaa ggaatgaata aaagctggaa ggatcacttc
    12301 cactatttgc tgatgccgct ggttggcgcg ctgacggtgg gtgtgctgtg ggttaacctc
    12361 gagtcaacgt cactgacact cggtctggta tgggcttcgt taggcggcgc atatttatgg
    12421 tatctgatcc gccgctatcg caaagtgccg ttgtatgatg gtgacagaac gccggtgagt
    12481 gaaacgtaat agtcggatgc gcggcgcatt atcctgccgg agggtaatgc accgcgccat
    12541 taactataaa aagatgtatg acccggatca cgagtgctat catccgccct tatgcttagc
    12601 gcattaaccc caggggcaaa taatgaacca cgatatcccg ctaaaatatt ttgatattgc
    12661 cgatgagtac gcgaccgaat gcgcagagcc tgtcgcagac gctgaacgca caccgctggc
    12721 ccactacttc cagttactgc tcacccgttt gatgaacaat gaagagatca gcgaagaagc
    12781 ccaacatgaa atggctgctg aagcggggat taatcccgta cgcattgatg agatcgcaga
    12841 gtttttgaat caatggggta atgagtaatt atttaattgc agacgatcgg tcagtatcgt
    12901 tgtccggata aagcgttcac gccgcatccg gctaacaatg acacgcactg cagcgtgctt
    12961 taatgggttt ctcacgatcg taccgctctg ctcctcgcta agttgttctg tgagttatag
    13021 ttatagagga agcacgggta cgaatgttga acagatggcg acgccacctg ttcaacgacc
    13081 aaccacacgg ccctcattac gacccctgaa cacaaacggt aatggcaaat gtcattaaat
    13141 attagtaaga tagcctcttt acataaaatc ccttaatatt atgcgccagg tattatcgtc
    13201 tcttttggtg attgctggac ttgtgagtgg tcaggcaatc gccgcgcctg aatccccccc
    13261 gcatgctgat atccgcgaca gcggttttgt ctattgcgtc agcgggcaag tcaacacctt
    13321 taacccatcc aaagcgagca gtgggttaat tgtcgatacc cttgccgccc agttttatga
    13381 tcgactgctg gatgtcgatc cctataccta tcgcctgatg ccggaacttg ccgaaagctg
    13441 ggaagtactc gacaacggcg cgacctatcg cttccacctg cgtcgcgatg ttccgtttca
    13501 aaaaaccgac tggtttactc ccactcgtaa aatgaatgcc gacgatgtgg tgtttacctt
    13561 ccagcgaatt tttgaccgca acaacccgtg gcataacgtc aacggcagca acttccccta
    13621 cttcgacagc ctgcaatttg ccgataacgt gaaaagcgtc cgcaaactgg ataatcatac
    13681 cgttgagttc cgactcgccc agccggatgc ttcttttttg tggcacctcg caacccatta
    13741 tgcttcggtc atgtcggcag aatatgcccg gaagttagag aaagaagatc gccaggagca
    13801 actcgaccgt caaccggtcg gcaccggtcc gtatcagttg tcggaatacc gcgccgggca
    13861 atttattcgc ctacaacgtc atgatgactt ctggcgcggt aaaccgttaa tgccgcaggt
    13921 agtggtggat ttaggctccg gcggcaccgg acgtctgtcg aaactcctga ccggggaatg
    13981 cgacgttctg gcctggcctg ctgccagcca gctatccatt ttgcgtgacg acccgcgctt
    14041 gcgtttaacg ctgcgtcctg ggatgaacgt cgcctatctg gcatttaaca ccgccaaacc
    14101 gccgctaaat aatcccgctg tccgccatgc actggcactg gcgattaata accagcgcct
    14161 gatgcaatcc atctattatg gtacggctga aacggcggcc tctattttac cgcgcgcctc
    14221 gtgggcctat gacaacgagg ctaaaattac tgaatacaat ccggcgaaat cgcgcgaaca
    14281 gttgaaggcg ttggggctgg aaaacttaac gctgaaactg tgggtgccca cacgttcgca
    14341 ggcgtggaac cccagtccac tgaaaactgc cgaactgatt caggcggata tggcgcaggt
    14401 tggcgtaaaa gtggtgattg tgccggtaga aggtcgcttt caggaggcgc ggttgatgga
    14461 tatgagccat gatctgacgt tatccggttg ggcgacggac agtaacgacc cggacagttt
    14521 cttccgtcct ttactgagct gcgcggcaat tcattcacag accaacctcg cccactggtg
    14581 cgatccgaaa ttcgacagcg tgttgcgtaa ggcgctctcc tcgcagcagc tggcggcgcg
    14641 tattgaagcc tatgacgaag cgcagagtat tctggcgcag gaattgccca ttttgccgct
    14701 ggcgtcgtca ttgcgtttgc aggcctatcg gtacgatatc aaaggtctgg tacttagccc
    14761 gtttggtaac gcctcctttg ctggggtgta tcgcgagaaa caggatgagg tgaaaaaacc
    14821 atgattatct tcaccttacg ccgcattttg ttattgattg tcaccttgtt cctgctgacc
    14881 ttcgttggct tcagcttgag ctatttcacc cctcatgcgc cgttacaagg cgcgtcactg
    14941 tggaatgcct gggtgttctg gtttaacggc ctgatccact gggattttgg tgtttccagc
    15001 attaacggtc aaccgattgc cgaacagtta aaagaggtct tcccggcgac gatggaactg
    15061 tgcatcctcg ccttcggttt tgcgctgatt gttggcatcc ccgtggggat gattgccggg
    15121 attacgcgcc ataagtggca ggataacttg atcaacgcca tcgccttact gggcttttca
    15181 atcccggtgt tctggctggc gcttctgttg acgctgtttt gttcactcac gctaggttgg
    15241 ttgcccgttt cagggcgttt cgatctgctc tacgaagtga aaccgattac cggttttgcg
    15301 ttgattgatg cctggctttc ggactcacca tggcgggatg aaatgatcat gagcgcaatc
    15361 cgccatatga tattgcccgt gatcaccctg tcggttgcgc caacaactga agtgatccgc
    15421 ctgatgcgta tcagcactat cgaagtgtat gaccagaact atgtaaaagc ggcggcgacc
    15481 cgcggtttgt cgcgctttac tattttgcgt cgccacgttc tgcataacgc gttaccgccg
    15541 gttattcctc gcctgggctt acagttttcc accatgctga cgctggcgat gatcaccgaa
    15601 atggttttta gctggccggg tttagggcgc tggttaatta acgccatccg ccagcaggat
    15661 tacgcagcca tttccgccgg agtgatggtg tgtggctcac tggtcattat tgttaacgtg
    15721 atttctgata ttttgggtgc catggctaac cctctgaaac ataaggaatg gtatgcctta
    15781 cgatagcgta tacagcgaaa agcgcccgcc gggcacgctg cgtaccgcct ggcgcaaatt
    15841 ttatagtgac gcctctgcga tggtcggcct gtacggctgc gcggggctgg ctgtactgtg
    15901 tatttttggc ggctggtttg cgccttacgg catcgaccag caatttctcg gttatcaatt
    15961 attgccgcca tcatggtcgc gctatggcga agtttctttc ttcctgggga ctgacgacct
    16021 cggacgcgat gttttaagcc gtttactgag cggagctgcg ccaaccgtgg gtggcgcatt
    16081 tgtggtgacg cttgccgcga cgatctgtgg cctagtactg ggcaccttcg ccggggcgac
    16141 acacggcctc cgctcagcgg tgcttaacca tattctggat accttactgg cgatcccttc
    16201 gctgctgttg gcaattatcg ttgtagcgtt tgccggaccg agtttgtccc acgctatgtt
    16261 tgctgtctgg ctggcattgc tgccgcgtat ggtacgttcg atttacagca tggtgcatga
    16321 cgaactggaa aaagagtacg ttatcgccgc ccgtctggat ggcgcatcaa cgctgaatat
    16381 tctctggttt gctgtgatgc caaacatcac cgccgggctg gtcaccgaga tcacccgcgc
    16441 actgtcgatg gcaattctcg atatcgccgc gctgggcttt ctcgatctcg gcgcacaact
    16501 cccctcgcct gaatggggag cgatgctcgg tgatgcgctg gaactgattt atgtcgcccc
    16561 gtggactgtc atgctgccag gtgcggcaat tatgattagc gtgttgttgg ttaacctcct
    16621 tggcgatggc gttcgtcgtg cgattattgc gggggtggaa taatgccatt actcgatatt
    16681 cgtaacctga ccattgaatt taaaaccggt gatgagtggg ttaaagccgt cgaccgggta
    16741 agtatgacct taaccgaagg tgaaatccgc ggtcttgttg gtgaatccgg ttccggcaag
    16801 agtttgattg cgaaagcgat ttgtggggtg aataaagata actggcgtgt tattgctgac
    16861 cgtatgcgtt ttgatgatat cgatttgctg cgtctctccg cacgcgaacg gcgcaaactg
    16921 gttggccata acgtgtcgat gattttccag gaaccgcagt cgtgtcttga cccttcagaa
    16981 cgtgtgggtc gccagttgat gcaaaacatc ccagcctgga cctataaagg ccgttggtgg
    17041 cagcgttttg gctggcgcaa acgccgtgcc attgaactgc tgcaccgcgt ggggattaaa
    17101 gatcacaaag atgcgatgcg cagttttccc tatgagttga ccgaaggtga atgtcagaaa
    17161 gtgatgatag ccattgcact ggcgaatcaa ccgcgtctgc tgattgctga cgaaccgacc
    17221 aactcaatgg agccaacaac ccaggcgcaa atctttcgcc tgctgacgcg tctcaaccaa
    17281 aacagcaata ccactatttt gcttatcagc catgacttac aaatgcttag ccaatgggcg
    17341 gataaaatta acgtgcttta ctgcggtcaa acagtggaaa ccgcgccgag taaggagttg
    17401 gtgacgatgc cacatcatcc ttatacccag gcgctgatcc gcgcgatacc agacttcggc
    17461 agcgcgatgc cgcataaaag tcgcctcaat acgctgcccg gcgctatccc actgctggaa
    17521 cagttaccga ttggttgtcg tctggggcca cgttgcccgt atgcacaacg agaatgcatt
    17581 gtgacgccac gtttgacggg ggcgaaaaat catctctatg cctgtcattt cccgctgaac
    17641 atggagaaag agtgagatga tcgaaacgct gcttgaagtg cgtaatttaa gtaaaacgtt
    17701 ccgctaccgg accggctggt ttcgccgtca gaccgtagaa gcggtaaaac ccttgagctt
    17761 tacgctacgt gaaggccaga cactggcgat tattggcgag aatggttcgg gtaaatccac
    17821 gctggcaaaa atgctggcgg gaatgataga gcctaccagc ggcgagttat tgattgacga
    17881 tcatccactg cattttggcg attattcctt ccgcagtcag cgtattcgca tgatttttca
    17941 ggatccttcg acctcgttga atccccgtca acgtatctcg caaattctgg attttccact
    18001 gcgcctgaac accgacctgg aaccggaaca gcgtcgcaaa cagattattg aaacgatgcg
    18061 tatggttggg ctgctaccgg atcacgtcag ttactatccg catatgttgg cacccggaca
    18121 aaaacagcgt ctgggtctgg cgcgcgcgct gatattgcgc ccaaaagtca ttattgccga
    18181 tgaagcactc gcttcactgg atatgtcgat gcgttcgcag ttgattaatc tgatgctgga
    18241 gttacaggaa aaacagggca tttcgtatat ttatgttacc cagcatatcg gaatgatgaa
    18301 gcacattagc gaccaggtgc tggtgatgca tcagggcgag gttgtcgagc gaggcagcac
    18361 cgcggatgtg ctggcatcgc cgctgcatga actcaccaaa cggctgattg ccgggcactt
    18421 tggcgaagca ttgacagcgg atgcgtggcg taaagatcgc taattttctg aatcctcctt
    18481 ccagattatc cacctcattc tgacaagaga ttaaatcttg tcagaatgag gtgatggata
    18541 aaataaaatc aaatgcgcgt gatttaagac gcaatctcac tttgcaggaa cgaaagctct
    18601 ggcgatatct tcgcagccga cgttttggtg atttcaaatt tcgccgtcaa catccggtgg
    18661 ggagctacat tctcgatttt gcttgctgct cggcgcgcgt agtcgttgag ctggatggtg
    18721 ggcagcatga tttggcagtt gcctatgata ccaggcgcac tagctggctt gagtcgcagg
    18781 gctggaccgt gctgcgtttc tggaataacg agattgattg taatgaggag gcggtgctgg
    18841 agattattct gcaggaactg aaccgccgat caccctcacc ctgaaagggc gagggggccg
    18901 accgagccga atagctgttg tggtgaaaac atggagactg tgctggagaa tattcggcaa
    18961 ggtctgaacc atcccagcca tcgccataaa agggttaggg gctgtatgag cctgtttgtt
    19021 gctggggtaa caatatttgc acaatatggt cccctcgccc ctctggggag agggttagtg
    19081 taaggggaaa agcgcccacc ctgccgcagc ctgctccggt cggacctagc aactatagct
    19141 actcacagcc aggttgatta taataaccat ttatctgttc gtactgttta ctaaaacgac
    19201 gaatcgcctg attttcaggc acaacaagca tcaacaataa ggattaaagc tatgggtttt
    19261 ctttccggta agcgcattct ggtaaccggt gttgccagca aactatccat cgcctacggt
    19321 atcgctcagg cgatgcaccg cgaaggagct gaactggcat tcacctacca gaacgacaaa
    19381 ctgaaaggcc gcgtagaaga atttgccgct caattgggtt ctgacatcgt tctgcagtgc
    19441 gatgttgcag aagatgccag catcgacacc atgttcgctg aactggggaa agtttggccg
    19501 aaatttgacg gtttcgtaca ctctattggt tttgcacctg gcgatcagct ggatggtgac
    19561 tatgttaacg ccgttacccg tgaaggcttc aaaattgccc acgacatcag ctcctacagc
    19621 ttcgttgcaa tggcaaaagc ttgccgctcc atgctgaatc cgggttctgc cctgctgacc
    19681 ctttcctacc ttggcgctga gcgcgctatc ccgaactaca acgttatggg tctggcaaaa
    19741 gcgtctctgg aagcgaacgt gcgctatatg gcgaacgcga tgggtccgga aggtgtgcgt
    19801 gttaacgcca tctctgctgg tccgatccgt actctggcgg cttccggtat caaagacttc
    19861 cgcaaaatgc tggctcattg cgaagccgtt accccgattc gccgtaccgt tactattgaa
    19921 gatgtgggta actccgcggc attcctgtgc tccgatctct ctgccggtat ctccggtgaa
    19981 gtggtccacg ttgacggcgg tttcagcatc gctgcaatga acgaactcga attgaaataa
    20041 tcattctgtt ggtaaatatt gggcggcgtt ctgccgcccg ttatctctgt tatacctttc
    20101 tgatatttgt tatcgccgat ccgtctttct ccccttcccg ccttgcgtca ggataacgat
    20161 ttcctttacg accaaggagc gcccatggaa caacgccaca tcaccggcaa aagccactgg
    20221 tatcatgaaa cgcaatccag tactgcggag tatgacgttc tgcctctggt cccggaagcc
    20281 gcaaaggtca gcgatccctt tctgctcgac gtgatccttg atgaagaaac gctagctccc
    20341 ttcctttcat ggctggtccc tgcgcgcgtt cttgcagtgg aattgttccc tgaccagctt
    20401 accgtgaccc gttcacagac cttcaccgct tatgaacgct tgtctacggc cctgacggtt
    20461 gctcaggttt gcggcgtcca gcggttatgt aactactatt cggcgcgact tacgccgctc
    20521 cccgggcctg attcctctag ggaaagcaat cataggttgg cacaaatcac gcaatatgcc
    20581 cgccaactgg ctagctcgcc ttctattatc gacaaccgat cgcgccagca tctgaatgac
    20641 gtcggtctta ctgccaggga ctgtgtaatc attaaccaaa tcattggttt tattggcttt
    20701 caggcgcgga ccattgcgac atttcaggct tatctcgggc acccggtacg ctggttaccc
    20761 ggtctggaaa tacaaaacta cgccgacgcg tcactgtttg ctgatgaatc aatacgctgg
    20821 cgaagcagct atgaggtgga aaaactacct gaagagtaca caaaaagttc aacagcagaa
    20881 ctttgccaac tggccgaaac actctctctc caccctattt cactttccct tctcgaaagg
    20941 ttgttaaaca gtacacgggt taatacacag ccggataata agcttgcggc gttgttatgc
    21001 gcgcggataa atggcagtcc tgcttgtttt gccgcctgta tggattcatc aaatgaatat
    21061 aaaaaaatca gcccccttct gcgcaagggc gaaaatgaaa ttaaccaatg ggctgaccgt
    21121 cattctgttg agcacgctac cgttcaggcg atacaatggc tgacccgagc acccgatcgc
    21181 tttagcaccg cccagttcag ccctttactc gaacacgaac aatcatcaac gcagattatt
    21241 aatctgctgg tatggagcgg gctgtgtggc tggataaatc gcttaaaaat cgcgttgggt
    21301 gagacatatt aaccttgccg cgtcagacag attcgcgtaa aactgtcagc cgctctaatg
    21361 gccaccaaaa tagacaatta tgtttcagga caacccgctg ctagcgcagc ttaaacagca
    21421 actgcattcc cagacgccac gcgctgaagg ggtggtaaaa gccacagaaa aaggctttgg
    21481 cttcctggaa gtcgacgcgc aaaaaagtta tttcattccg ccgccgcaga tgaaaaaagt
    21541 catgcatggc gaccgaatta tcgcggtgat ccacagtgaa aaagaacgtg aatccgcaga
    21601 gccagaagaa ctggttgaac cgttcctgac tcgtttcgtg ggtaaagttc agggcaaaaa
    21661 tgaccgtctg gccatcgttc ctgatcatcc actcttaaaa gacgccattc cttgccgcgc
    21721 agcccgtggc ctgaaccacg agtttaaaga aggcgactgg gcggttgccg aaatgcgccg
    21781 tcatccgctg aaaggcgatc gttctttcta tgctgaattg acacaataca tcacttttgg
    21841 tgacgaccac tttgtaccgt ggtgggttac acttgcgcgc cataatctgg aaaaagaagc
    21901 accagacggc gtcgctaccg aaatgctcga tgaaggtctg gttcgtgaag atctgaccgc
    21961 gctggatttt gtcaccatcg acagtgccag cacagaagat atggatgacg cccttttcgc
    22021 taaggcgttg ccggatgaca aacttcagct gattgtggcg attgccgatc caaccgcgtg
    22081 gattgctgaa ggcagcaagc tggacaaagc cgcgaaaatt cgcgcattca ccaactatct
    22141 gcctggcttc aacatcccta tgctgcctcg cgagctttct gacgatctct gctcactgcg
    22201 cgccaatgaa gtccgcccgg tactggcatg ccgcatgacg ctctccgctg atggcgccat
    22261 tgaagataat atcgaattct ttgccgccac catcgaatcc aaagcaaagc tggtgtatga
    22321 ccaggtttct gactggctgg aaaataccgg tgactggcag cctgaaagtg aagcaattgc
    22381 cgaacaagtc cgtttgctag cgcaaatttg ccaacgccgc ggcgagtggc gtcataacca
    22441 cgcactggtg tttaaagatc gcccggatta ccgctttatt ctcggtgaaa aaggtgaagt
    22501 gctggatatc gtcgccgagc ctcgtcgcat tgccaaccgt atcgtcgaag aagcgatgat
    22561 tgccgctaac atttgtgcgg cccgcgtact gcgcgataag ctcggttttg gcatctataa
    22621 cgtgcatatg ggctttgatc cggcgaatgc cgacgcgctg gcagcgttgc tgaaaacgca
    22681 cggtctgcat gtcgatgccg aagaagtgct cacgctggac ggtttctgca aactgcgtcg
    22741 tgaactggac gcgcaaccaa ctggtttcct cgacagccgc attcgtcgct tccagtcatt
    22801 tgctgaaatt agcactgaac ccggtcctca ctttggcctc ggtctggaag catacgccac
    22861 ctggacttcg ccgatccgta aatatggcga catgatcaac caccgtctgc tgaaagcggt
    22921 tatcaaaggc gaaactgcga cgcgcccaca ggatgaaatc actgtccaaa tggccgagcg
    22981 tcgccgtctc aaccggatgg cagaacgtga tgttggtgac tggttatacg cacgcttcct
    23041 gaaagacaaa gccgggaccg acacccgttt cgcagcggaa attgtcgata tcagccgtgg
    23101 cggcatgcgt gtgcgtttgg ttgataacgg cgctatcgcc tttattccgg cacctttctt
    23161 acacgctatg cgcgatgaac tggtttgcag ccaggaaaac ggcactgtac aaattaaagg
    23221 tgaaacggtt tacaaagtaa ctgacgttat tgacgtcacc attgccgaag tccgcatgga
    23281 aacccgcagc attattgcgc gcccggtcgc gtaatctcct ttcacggcct attcctcatg
    23341 gatgggccgt ttatttcccc gctctacctt cgttatatcc aggcagattt tttaactgac
    23401 tttcgtttga aaactggcgt ttttccaaaa ctggattaca aataaatata taaaaaaaca
    23461 atgcgtttag ccgccgttaa tttcatgtaa gtcat
//
LOCUS       DADMJB010000050        23030 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.050, whole genome shotgun sequence.
ACCESSION   DADMJB010000050 DADMJB010000000
VERSION     DADMJB010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 23030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23030
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.050"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..562)
                     /locus_tag="JN078_001781"
     CDS             complement(<1..562)
                     /locus_tag="JN078_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418580.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAY9041014.1"
                     /translation="MPHTIKKMSLIGLILMIFTSVFGFANSPSAYYLMGYSAIPFYIF
                     SALLFFIPFALMMAEMGAAYRKEEGGIYSWMNNSVGPRFAFIGTFMWFSSYIIWMVST
                     SAKVWVPFSTFLYGSDMTQHWRIAGLEPTQVVGLLAVAWMILVTVVASKGINKIARIT
                     AVGGIAVMCLNLVLLLVSITILLLNGG"
     gene            complement(781..1758)
                     /gene="epmA"
                     /locus_tag="JN078_001782"
     CDS             complement(781..1758)
                     /gene="epmA"
                     /locus_tag="JN078_001782"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000004771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P--(R)-beta-lysine ligase"
                     /protein_id="HAY9041015.1"
                     /translation="MSETASWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMS
                     QATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNE
                     EMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYLEID
                     PLSADKTQLREVAAKLNLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPAS
                     QASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQ
                     HPIDQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDRA"
     gene            2083..3891
                     /gene="frdA"
                     /locus_tag="JN078_001783"
     CDS             2083..3891
                     /gene="frdA"
                     /locus_tag="JN078_001783"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase (quinol) flavoprotein
                     subunit"
                     /protein_id="HAY9041016.1"
                     /translation="MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS
                     HTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGC
                     PWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLD
                     ILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAL
                     SHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLG
                     EPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICE
                     LAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRL
                     GSNSLAELVVFGRMAGEQATERAATAGNGNEEAIEAQAAGVEQRLKDLVNQDGGENWA
                     KIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIE
                     LGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEY
                     SDVKITTLPPAKRVYGGEADAADKAEAANKKEKANG"
     gene            3884..4618
                     /locus_tag="JN078_001784"
     CDS             3884..4618
                     /locus_tag="JN078_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HAY9041017.1"
                     /translation="MAEMKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYI
                     KDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERD
                     LVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACP
                     QFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKH
                     VDPAAAIQQGKVESSKDFLIATLKPR"
     gene            4629..5024
                     /gene="frdC"
                     /locus_tag="JN078_001785"
     CDS             4629..5024
                     /gene="frdC"
                     /locus_tag="JN078_001785"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdC"
                     /protein_id="HAY9041018.1"
                     /translation="MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELI
                     FGLFALKNGPDAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDE
                     KMGPEPIIKSLWAVTVVATIVILFVALYW"
     gene            5035..5394
                     /gene="frdD"
                     /locus_tag="JN078_001786"
     CDS             5035..5394
                     /gene="frdD"
                     /locus_tag="JN078_001786"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdD"
                     /protein_id="HAY9041019.1"
                     /translation="MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGL
                     FPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFY
                     GLAAILTVVTLIGIVTI"
     gene            5457..6590
                     /gene="blaEC"
                     /locus_tag="JN078_001787"
     CDS             5457..6590
                     /gene="blaEC"
                     /locus_tag="JN078_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BlaEC family class C beta-lactamase"
                     /protein_id="HAY9041020.1"
                     /translation="MFKTTLCALLITASCSTFAAPQQINDIVHRTITPLIEQQKIPGM
                     AVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLS
                     DPATKYWPELTAKQWNGITLLHLATYTAGGLPLQMPDEVKSSSDLLRFYQNWQPAWAP
                     GTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWG
                     YREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLTPLDINEKTLQQGIQLAQSRYW
                     QTGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAIKPPTPAVRASWVHKTGA
                     TGGFGSYVAFIPEKELGIVMLANKNYPNPARVAAACQILNALQ"
     gene            6679..7212
                     /locus_tag="JN078_001788"
     CDS             6679..7212
                     /locus_tag="JN078_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HAY9041021.1"
                     /translation="MRLLPLVAAATAAFLVVACSSPTPPRGVTVVNNFDAKRYLGTWY
                     EIARFDHRFERGLEKVTATYSLRDGGGLNVINKGYNPDREMWQQSEGKAYFTGAPTRA
                     ALKVSFFGLFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVAT
                     REGFDVSKFIWVQQPGS"
     gene            complement(7209..7526)
                     /locus_tag="JN078_001789"
     CDS             complement(7209..7526)
                     /locus_tag="JN078_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418572.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound-resistance protein
                     SugE"
                     /protein_id="HAY9041022.1"
                     /translation="MSWIILVIAGLLEVVWAVGLKYTHGFSRLTPSVITVTAMIVSMA
                     LLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESANPMRLASLALIVLGIIGLKL
                     STH"
     gene            complement(7708..7854)
                     /gene="ecnB"
                     /locus_tag="JN078_001790"
     CDS             complement(7708..7854)
                     /gene="ecnB"
                     /locus_tag="JN078_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein toxin entericidin B"
                     /protein_id="HAY9041023.1"
                     /translation="MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAAT
                     KAQQ"
     gene            complement(7965..8090)
                     /gene="ecnA"
                     /locus_tag="JN078_001791"
     CDS             complement(7965..8090)
                     /gene="ecnA"
                     /locus_tag="JN078_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein antitoxin entericidin A"
                     /protein_id="HAY9041024.1"
                     /translation="MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS"
     gene            complement(8142..8708)
                     /gene="efp"
                     /locus_tag="JN078_001792"
     CDS             complement(8142..8708)
                     /gene="efp"
                     /locus_tag="JN078_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HAY9041025.1"
                     /translation="MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLR
                     RLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGD
                     NAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGA
                     VVKVPLFVQIGEVIKVDTRSGEYVSRVK"
     gene            8750..9799
                     /gene="epmB"
                     /locus_tag="JN078_001793"
     CDS             8750..9799
                     /gene="epmB"
                     /locus_tag="JN078_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000940527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HAY9041026.1"
                     /translation="MAHIVTLNTPSREDWLTQLADVVTDPDELLRLLNIDADEKLLAG
                     RSAKKLFALRVPRSFIDRMEKGNPDDPLLRQVLTSQDEFVVASGFSTDPLEEQHSVVP
                     GLLHKYHNRALLLVKGGCAVNCRYCFRRHFPYAENQGNKRNWQTALEYVAAHPELDEM
                     IFSGGDPLMAKDHELDWLLTQLEAIPHIKRLRIHSRLPIVIPARITDALVERFSHSTL
                     QILLVNHINHANEIDETFRQAMAKLRRVGVTLLNQSVLLRDVNDNAQTLANLSNALFD
                     AGVMPYYLHVLDKVQGAAHFMVSDDEARQIMRELLTLVSGYLVPKLAREIGGEPSKTP
                     LDLQLRQQLLIKQGS"
     gene            10173..11042
                     /locus_tag="JN078_001794"
     CDS             10173..11042
                     /locus_tag="JN078_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041027.1"
                     /translation="MAISIKGVNTGVIRKSNNFIALALKIKEPRNKESLFFMSVMELR
                     DLLIALESRLHQKHKLDAAARLQYEQARDKVIKKMAENIPEILVDELKNADINRRVNT
                     LELTDNQGENLTFVLTLHDGSKCELVVNELQIEMLARAIIHAINNAEMRELALRITSL
                     LDFLPLYDVDCQENGNLEYDTYSQPEWKHNLFDHYLAVLYRFKDESGKEQFSGAVVKT
                     REATPGKEVEAITRRMLDFSPRLKKLAGVPCQVYVRTVAANNAQPLTQDQCLRALHHL
                     RVQSTSKTAPQAK"
     gene            complement(11245..11598)
                     /locus_tag="JN078_001795"
     CDS             complement(11245..11598)
                     /locus_tag="JN078_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418568.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4156 domain-containing protein"
                     /protein_id="HAY9041028.1"
                     /translation="MHVKYLAGIVGAALLMAGCSSSNELSAAGQSVRIVDEQPGAECQ
                     LIGTATGKQSNWLSGQHGEEGGSMRGAANDLRNQAAAMGGNVIYGISSPSQGMLSSFV
                     PTDSQIIGQVYKCPN"
     gene            complement(11736..13382)
                     /gene="groL"
                     /locus_tag="JN078_001796"
     CDS             complement(11736..13382)
                     /gene="groL"
                     /locus_tag="JN078_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120975.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HAY9041029.1"
                     /translation="MAAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSF
                     GAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITE
                     GLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGK
                     LIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESP
                     FILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAV
                     KAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIID
                     GVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEK
                     KARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAP
                     LRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAA
                     SVAGLMITTECMVTDLPKNDAADLGAAGGMGGMGGMGGMM"
     gene            complement(13426..13719)
                     /locus_tag="JN078_001797"
     CDS             complement(13426..13719)
                     /locus_tag="JN078_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004391824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HAY9041030.1"
                     /translation="MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVG
                     NGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVEA"
     gene            13995..15251
                     /gene="yjeH"
                     /locus_tag="JN078_001798"
     CDS             13995..15251
                     /gene="yjeH"
                     /locus_tag="JN078_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-methionine/branched-chain amino acid
                     transporter"
                     /protein_id="HAY9041031.1"
                     /translation="MSGLKQELGLAQGIGLLSTSLLGTGVFAVPALAAQVAGNNSLWA
                     WPVLIILVFPIAIVFAILGRHYPCAGGVAHFVGMAFGSRLERVTGWLFLSVIPVGLPA
                     ALQIAAGFGQAMFGWHSWQLLLAELGTLALVWYIGTRSASSSANLQTVIAGLIVALIV
                     AIWWAGDIKPANIPFPAPGNIELTGLFAALSVMFWCFVGLEAFAHLASEFKNPERDFP
                     RALMIGLLLAGLVYWGCTVVVLHFDAYGEKMAAAASLPKIVVQLFGVGALWIACVIGY
                     LACFASLNIYIQSFARLVWSQAQHNPDHYLARLSSRHIPNNALNAVLGCCVVSTLVIH
                     ALEINLDALIIYANGIFIMIYLLCMLAGCKLLQGRYRLLAVVGGLLCVLLLAMVGWKS
                     LYALIVLAGLWLLLPKRKTPENGIIT"
     gene            complement(15267..15743)
                     /gene="fxsA"
                     /locus_tag="JN078_001799"
     CDS             complement(15267..15743)
                     /gene="fxsA"
                     /locus_tag="JN078_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418564.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein FxsA"
                     /protein_id="HAY9041032.1"
                     /translation="MRWLPFIAIFLYVYIEISIFIQVAHVLGVLLTLVLVIFTSVIGM
                     SLVRNQGFKNFVLMQQKMAAGENPAAEMIKSVSLIIAGLLLLLPGFFTDFLGLLLLLP
                     PVQKHLTVKLMPHLRFSRMPGGGFSAGTGGGNTFDGEYQRKDDERDRLDHKDDRQD"
     gene            16080..17516
                     /gene="aspA"
                     /locus_tag="JN078_001800"
     CDS             16080..17516
                     /gene="aspA"
                     /locus_tag="JN078_001800"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313147.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HAY9041033.1"
                     /translation="MSNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDI
                     PEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGA
                     GTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSL
                     IKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNI
                     QRTAELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGA
                     YVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPE
                     VVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCIN
                     GITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTE
                     AELDDIFSVQNLMHPAYKAKRYTDESEQ"
     gene            17634..18935
                     /locus_tag="JN078_001801"
     CDS             17634..18935
                     /locus_tag="JN078_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HAY9041034.1"
                     /translation="MLVVELIIVLLAIFLGARLGGIGIGFAGGLGVLVLAAIGVKPGN
                     IPFDVISIIMAVIAAISAMQVAGGLDYLVHQTEKLLRRNPKYITILAPIVTYFLTIFA
                     GTGNISLATLPVIAEVAKEQGVKPCRPLSTAVVSAQIAITASPISAAVVYMSSVMEGH
                     GISYLHLLSVVIPSTLLAVLVMSFLVTMLFNSKLSDDPIYRKRLEEGLVELRGEKQIE
                     IKSGAKTSVWLFLLGVVGVVIYAIINSPSMGLVEKPLMNTTNAILIIMLSVATLTTVI
                     CKVDTDNILNSSTFKAGMSACICILGVAWLGDTFVSNNIDWIKDTAGEVIQGHPWLLA
                     VIFFFASALLYSQAATAKALMPMALALNVSPLTAVASFAAVSGLFILPTYPTLVAAVQ
                     MDDTGTTRIGKFVFNHPFFIPGTLGVALAVCFGFVLGSFML"
     gene            19051..19389
                     /gene="cutA"
                     /locus_tag="JN078_001802"
     CDS             19051..19389
                     /gene="cutA"
                     /locus_tag="JN078_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent cation tolerance protein CutA"
                     /protein_id="HAY9041035.1"
                     /translation="MLDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIP
                     GATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTD
                     YLSWLNASLR"
     gene            19365..21062
                     /locus_tag="JN078_001803"
     CDS             19365..21062
                     /locus_tag="JN078_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HAY9041036.1"
                     /translation="MAQRIFTLILLLCSTSVFAGLFDAPGRSQFVPADQAFTFDFQQN
                     QHDLNLTWQIKDGYYLYRKQIRITPEHAKIADVQLPQGVWHEDEFYGKSEIYRDRLTL
                     PVTINQASAGATLTVTYQGCADAGFCYPPETKTVPLSEVVANNAASQPVSVSQQEQHT
                     AQLPFSALWALLIGIGIAFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA
                     LTYTALGLVVAAAGLQFQAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLT
                     LMSNRQQGGSPGGVFVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL
                     GMGLPLMLITVFGNRLLPKSGPWMEQVKTAFGFVILALPVFLLERVIGDVWGLRLWSA
                     LGVAFFGWAFITSLQAKRGWMRVVQIILLAAALVSVRPLQDWAFGATHTAQTQTHLNF
                     TQIKTVDELNHALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQA
                     NITANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP"
     gene            21099..21674
                     /locus_tag="JN078_001804"
     CDS             21099..21674
                     /locus_tag="JN078_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HAY9041037.1"
                     /translation="MQREDVLGEALKLLELQGIANTTLEMVAERVDYPLDELRRFWPD
                     KEAILYDALRYLSQQIDVWRRQLMLDETQTAEQKQLARYQALSECVKNNRYPGCLFIA
                     ACTFYPDPGHPIHQLADQQKSAAYDFTHELLTTLEVDDPAMVAKQMELVLEGCLSRML
                     VNRSQADVDTAHRLAEDILRFARCRQGGALT"
     gene            21781..21856
                     /locus_tag="JN078_001805"
     tRNA            21781..21856
                     /locus_tag="JN078_001805"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:21814..21816,aa:Phe,seq:gaa)
     gene            22054..>23030
                     /locus_tag="JN078_001806"
     CDS             22054..>23030
                     /locus_tag="JN078_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HAY9041038.1"
                     /translation="MALTDAKIRAAKPTDKAYKLTDGTGMFLLVHPNGSRYWRLRYRI
                     LGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIA
                     RRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEI
                     ASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGS
                     YKGQTVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGS
                     KMRTPHLVPLSKQAVAILTELQTWAGENGLIFTGAHDPRKPISENVMNAS"
BASE COUNT         5738 a         5942 c         5700 g         5650 t
ORIGIN      
        1 gcccaccatt taataacaaa atagtaatgc ttactaacag caatactaaa ttcagacaca
       61 ttactgcaat accgcccacc gcagtaatgc gggcaatttt attaatcccc tttgaagcaa
      121 cgacggtgac cagaatcatc catgctactg ccagcagacc aaccacctgc gtaggctcca
      181 gtccggcaat acgccagtgc tgggtcatgt cgctaccata gaggaatgtt gagaacggta
      241 cccaaacttt cgcggaggta ctcaccatcc agatgatata agaggaaaac cacataaacg
      301 taccaatgaa ggcaaaacgt ggtccgacac tattattcat ccaggaatag ataccacctt
      361 cttctttgcg ataagcagct cccatttcag ccatcattaa ggcgaatgga ataaagaata
      421 acaatgcaga aaatatataa aagggaatcg cactataacc cattaagtaa taagccgatg
      481 ggctattggc aaatccaaat acggaagtaa agatcatcaa tatgagtcct atcagactca
      541 tcttttttat cgtgtgaggc atgaaaccat ccttcatttc agcgcgtgta taacacgtgc
      601 ccactgaact gcactgcgca acattgagca ggcagcgtaa aaaccaatac agaattgata
      661 cccggatgat atcaaatatc cagtcttaaa ttgtggcctt taacggaaaa atgaaaacat
      721 atgctacaga atggcgctta tcacgccatt cttcgctgtt aattcagtaa tttttcagaa
      781 ttatgcccgg tcaacgctaa aggcgatgac ttcagccagt gtctccgcgc ccagcgccaa
      841 catcaccaga cgatcaacac ctaatgccac gccggaacag tcaggcatac cgactttcaa
      901 ggcttcaatc agattctggt caatggggtg ctgcggcaaa ccgcgcgccg cgcgcttacg
      961 gttatcttgt tcaaagcgtt gttgctgctc acgggcatcc gttaattcat ggaaaccatt
     1021 cgccagctca atacctttat aataaacctc aaagcgttca gcgacccgat gatcttcggt
     1081 actgatttgc gccagtgatg cctggctggc tggaaagtgg tacacaaagg tcggtttttc
     1141 tttgccaata tttggctcta cgccaaaggt aaacagcaat tgtagcaacg tgtcgcggtc
     1201 ttcttcggta tcagcaacgt tactcaaatt cagtttcgct gcgacttccc gcagttgcgt
     1261 tttgtcggca gagagcgggt caatttccag ataacgcaag aaagcttgtt gataagaaag
     1321 gctttctgct gccgggcagt ccagcacctg ttgtaagaga tcgtccacct cgttcatcaa
     1381 ccggtacata tcatagtgcg gtcgatacca ctcaagcata gtgaactcag ggttgtgata
     1441 acgccccatc tcttcattac ggaagctgcg gcacagctgg aataccggcc cacaaccggc
     1501 aaccagcagg cgtttcatat ggtattccgg gctggtcatt aaccagagat tcatcccctg
     1561 cgaatgcccg gggccaacga aacgtgtctc aaacgggacc aaatgaatat cggttaccgt
     1621 cgcctggctc atacaaggcg tctccacctc cagcactcca cgatcagcaa agaaacgacg
     1681 gatctccgcc ataatcgccg cgcgttttaa taagttagga atggatgcgc tcggctgcca
     1741 ggatgccgtt tcgctcatag ttaaatctcc agtttttgac aagggcacga agtctactcg
     1801 caacgcgacg gcgagacaaa ttttacgcag gaatcaaaca gcggtgggca gtgactaaaa
     1861 aaagcacgat ctgatggttt agtaattaaa ttaatcatct tcagtgataa tttagccctc
     1921 ttgcgcacta aaaaaatcga tctcgtcaaa tttcagactt atccatcaga ctatactgtt
     1981 gtacctataa aggagcagtg gaatagcgtt cgcagaccgt aactttcagg cacttaccct
     2041 gaagtacggg gctgtgggat aaaaacaatc tggaggaatg tcgtgcaaac ctttcaagcc
     2101 gatcttgcca ttgtaggcgc cggtggcgcg ggattacgtg ctgcaattgc tgccgcgcag
     2161 gcaaatccaa atgcaaaaat cgcactaatc tcaaaagtat acccgatgcg tagccatacc
     2221 gttgctgcag aagggggctc cgccgctgtc gcgcaggatc atgacagctt cgaatatcac
     2281 tttcacgata cagtagcggg tggcgactgg ttgtgtgagc aggatgtcgt ggattatttc
     2341 gtccaccact gcccaaccga aatgacccaa ctggaactgt gggggtgccc atggagccgt
     2401 cgcccggatg gtagcgtcaa cgtacgtcgc ttcggcggca tgaaaatcga gcgcacctgg
     2461 ttcgccgccg ataagaccgg cttccatatg ctgcacacgc tgttccagac ctctctgcaa
     2521 ttcccgcaga tccagcgttt tgacgaacat ttcgtgctgg atattctggt tgatgatggt
     2581 catgttcgcg gcctggtagc aatgaacatg atggaaggca cgctggtgca gatccgtgct
     2641 aacgcggtcg ttatggctac tggcggtgcg ggtcgcgttt atcgttacaa caccaacggc
     2701 ggcatcgtta ccggtgacgg tatgggtatg gcgctaagcc acggcgttcc gctgcgtgac
     2761 atggaattcg ttcagtatca cccaaccggt ctgccaggtt ccggtatcct gatgaccgaa
     2821 ggctgccgtg gtgaaggcgg tattctggtc aacaaaaatg gctaccgtta tctgcaagat
     2881 tacggcatgg gcccggaaac tccgctgggc gagccgaaaa acaaatatat ggaactgggt
     2941 ccacgcgaca aagtttctca ggccttctgg cacgaatggc gtaaaggcaa caccatctcc
     3001 acgccgcgtg gcgatgtggt ttatctcgac ttgcgtcacc tcggcgagaa aaaactgcat
     3061 gaacgtctgc cgttcatctg cgaactggcg aaagcgtacg ttggcgtcga tccggttaaa
     3121 gaaccgattc cggtacgtcc gaccgcacac tacaccatgg gcggtatcga aaccgatcag
     3181 aactgtgaaa cccgcattaa aggtctgttc gccgtgggtg aatgttcctc tgttggtctg
     3241 cacggtgcaa accgtctggg ctccaactcc ctggcggaac tggtggtctt cggccgtatg
     3301 gccggtgaac aagcgacaga gcgtgcagca actgccggta atggcaacga agaggcaatt
     3361 gaagcgcagg cagctggcgt tgaacaacgt ctgaaagatc tggttaacca ggatggcggc
     3421 gaaaactggg cgaagatccg cgacgaaatg ggcctagcaa tggaagaagg ttgcggtatc
     3481 taccgtacgc cggaactgat gcagaaaacc atcgacaagc tggcagagct gcaggaacgc
     3541 ttcaagcgcg tgcgcatcac cgacacctcc agcgtgttca acaccgacct gctctacacc
     3601 attgaactgg gccacggtct gaacgttgct gaatgtatgg cgcactccgc aatggcacgt
     3661 aaagagtccc gcggcgcaca ccagcgtctg gacgaaggtt gcaccgagcg tgacgacgtc
     3721 aacttcctca aacacaccct cgccttccgc gatgctgatg gcacgactcg cctggagtac
     3781 agcgacgtga agattactac gctgccgcca gctaaacgcg tttacggtgg cgaagcggat
     3841 gcagccgata aggcggaagc agccaataag aaggagaagg cgaatggctg agatgaaaaa
     3901 cctgaaaatt gaggtggtgc gctataaccc ggaagtcgat accgcaccgc atagcgcatt
     3961 ctatgaagtg ccttatgacg caactacctc attactggat gcgctgggct acatcaaaga
     4021 caacctggca ccggacctga gttaccgctg gtcctgccgt atggcgattt gtggttcctg
     4081 cggcatgatg gttaacaacg tgccaaaact ggcatgtaaa accttcctgc gtgattacac
     4141 cgacggtatg aaggttgaag cgttagctaa cttcccgatt gaacgcgatc tggtggtcga
     4201 tatgacccac ttcatcgaaa gtctggaagc gatcaaaccg tacatcatcg gcaactcccg
     4261 caccgcggat cagggtacta acatccagac cccggcgcag atggcaaagt atcaccagtt
     4321 ctccggttgc atcaactgtg gtctgtgcta cgccgcgtgc ccgcagtttg gcctgaaccc
     4381 agagttcatc ggtccggctg ccattacgct ggcgcatcgt tataacgaag atagccgcga
     4441 ccacggtaag aaggagcgta tggcgcagtt gaacagccag aacggcgtat ggagctgtac
     4501 tttcgtgggc tattgctccg aagtctgccc gaaacacgtc gatccggctg cggccattca
     4561 gcagggcaaa gtagaaagtt cgaaagactt tcttatcgcg accctgaaac cacgctaagg
     4621 agtgcaacat gacgactaaa cgtaaaccgt atgtacggcc aatgacgtcc acctggtgga
     4681 aaaaattgcc gttttatcgc ttttacatgc tgcgcgaagg cacggcggtt ccggctgtgt
     4741 ggttcagcat tgaactgatt ttcgggctgt ttgccctgaa aaatggcccg gacgcctggg
     4801 cgggattcgt cgacttttta caaaacccgg ttatcgtgat cattaacctg atcactctgg
     4861 cggcagctct gctgcacacc aaaacctggt ttgaactggc accgaaagcg gccaatatca
     4921 ttgtaaaaga cgaaaaaatg ggaccagagc caattatcaa aagtctctgg gcggtaactg
     4981 tggttgccac catcgtaatc ctgtttgttg ccctgtactg gtaaggagcc tgagatgatt
     5041 aatccaaatc caaagcgttc tgacgaaccg gtattctggg gcctcttcgg ggccggtggt
     5101 atgtggagcg caattattgc gccggtgatg atcctgctgg tgggtattct gctgccactg
     5161 gggctgtttc cgggtgatgc gctgagctac gagcgcgttc tggcgttcgc gcagagcttc
     5221 attggtcgcg tattcctgtt cctgatgatc gttctgccgc tgtggtgtgg tttacaccgt
     5281 atgcaccacg cgatgcacga tctgaaaatt cacgtgcctg cgggcaaatg ggttttctac
     5341 ggtctggctg ctatcctgac agttgtcacg ctgattggta tcgttacaat ctaacgtatc
     5401 gccaatgtaa atccggcccg cctatggcgg gccgttttgt atggaaacca gaccttatgt
     5461 tcaaaacgac gctctgcgcc ttattaatta ccgcctcttg ctccacattt gctgcccctc
     5521 aacaaatcaa cgatattgtg catcgcacaa ttaccccgct tatagagcaa caaaagatcc
     5581 ccggtatggc ggtggcggta atttatcagg gtaaacctta ttactttacc tggggctatg
     5641 cggacatcgc caaaaagcag cccgtcacac agcaaacgtt gtttgagtta ggttcggtca
     5701 gcaaaacatt tacgggcgtg cttggtggcg atgctattgc tcgaggggaa atcaagttaa
     5761 gcgatcccgc aacaaaatac tggcctgaac ttaccgctaa acagtggaat gggatcacac
     5821 tattacatct tgcgacctac accgctggcg gcctgccatt gcagatgccg gatgaagtga
     5881 aatcctcaag cgacttgctg cgcttctatc aaaactggca gcctgcatgg gctccaggaa
     5941 cacaacgtct gtatgccaac tccagtatcg gtttgttcgg cgcactggct gtgaagccgt
     6001 ctggtttgag ttttgagcag gcgatgcaaa ctcgtgtctt ccagccactc aaactcaacc
     6061 atacgtggat taatgtaccg cccgcagaag aaaagaatta cgcctgggga tatcgcgaag
     6121 gcaaggcagt tcatgtttcg ccaggggcgt tagatgctga agcttatggt gtgaagtcga
     6181 ccattgaaga tatggcccgc tgggtgcaaa gcaatttaac cccccttgat atcaatgaga
     6241 aaacgcttca acaagggata caactggcac aatctcgcta ctggcaaacc ggcgatatgt
     6301 atcagggcct gggctgggaa atgctggact ggccggtcaa tcctgacagc atcattaacg
     6361 gcagtgacaa taaaattgca ctggcagcac gcccggtaaa agcgattaag cccccaactc
     6421 ctgcagtacg cgcatcatgg gtacataaaa cgggggcgac cggcggattt ggtagctatg
     6481 tcgcgtttat tccagaaaaa gagctgggta tcgtgatgct ggctaacaaa aactatccca
     6541 atccagcgag agtcgccgcc gcctgtcaga ttctcaacgc tctacagtaa aatttcatcg
     6601 ggtccgaatt ttcggacctt ttctgcgctt ttccttgctg tcatctacac ttagaaaaaa
     6661 accagtaagg aaacatttat gcgcctgctc cctctcgttg ccgcagcgac agctgcattt
     6721 ctggtcgttg cctgcagttc tcctacgccg ccgcgtggcg tgacagtagt gaataatttc
     6781 gacgctaaac gctatctcgg tacctggtat gagattgccc gttttgatca ccgttttgaa
     6841 cgtggactgg aaaaagtcac cgcaacatac agtctgcgtg atggcggcgg cctgaatgtc
     6901 atcaataaag gctataaccc tgacagagaa atgtggcagc agagtgaagg gaaagcgtac
     6961 tttaccggcg caccaacacg cgctgcgctg aaagtgtcat tctttggtct tttctatggc
     7021 ggttataacg tcattgcact tgatcgggaa taccgccatg cgctggtttg cggcccggac
     7081 cgcgactacc tgtggatact ctcccgcacg ccaaccattt ctgacgaagt gaaacaggag
     7141 atgctggcag tcgcgacccg ggaagggttt gatgtcagta agtttatttg ggtacagcag
     7201 cccggtagtt agtgagtgct gagtttcaga ccaataatcc ccaatacgat taacgccaga
     7261 ctcgccaggc gcatcgggtt agcggactca ccgagcagca caatgccggt gatagccgcg
     7321 ccgactgcgc caatacccgt ccacacggca taagccgtcc ctactggtaa cgatttcatc
     7381 gcccaggcaa gtagcgccat actgacaatc atcgccgtca cggtaataac actcggcgtc
     7441 aaacgactaa agccgtgggt atatttcagg ccaacggccc ataccacttc cagcagacca
     7501 gcaataacta agataatcca ggacatatca ggctccggag aattggggcc gtccccggtg
     7561 aaaagacgcg tttgcaggtc gtcctgcaaa gctgatggtt gaacggatat tttgccaggt
     7621 ggcaggggaa tttcaactat taccttagtg actatcgcag aaaaaacaaa cggcacgaca
     7681 cagctgtcgt accgttattg cttattgcta ttgctgcgct ttcgttgctg cgccagaaat
     7741 cgcgttaccg ccatcagaaa tgtcttcacc aacgccacgc gtggtgttgc aggcagttaa
     7801 tactgttgaa agcaccagaa cagaaaagat cgctgcaatt gtcttcttca ccataacgtc
     7861 ttccttttag gtaatgttat ttatgtttgc ctatagcaaa ttaataatag acaacatcgc
     7921 caaaaatgac ggaaatctga tgatttttcg gaagagaaga aaaattagct ggcagcgcga
     7981 gagatggagt tgccgagatg tttgatgtct tcgccgaaac cgcgagcggt gttacagccc
     8041 gtgagcagcg tactggcaag caaaacaaga acgataaggc gtttcatcat ctctgacctg
     8101 aataagtgat ggtgcagcct gcaggccgca ccacaaccgc attacttcac gcgagagacg
     8161 tattcaccag agcgggtatc cactttgatg acttcgccga tttgtacgaa cagcggaacc
     8221 ttaaccacag cgccagtaga cagggtagcc ggtttgccgc cagtacctgc ggtatcacct
     8281 ttcaggcccg gatcggtatc aacgatttcc agttcaacga agttcggcgg agtaacggag
     8341 atcggctgac cattccacag agttacgata cactctgcct gatccagcag ccatttagcg
     8401 ttatcgccaa ttgcttttgc atcagcagac agctgctcga aagtttcgtt gttcatgaag
     8461 tgccagaact caccgtcgtt gtacaggtaa gtcaggttca tatcgacaac atcagcgcct
     8521 tcagcggaat cagtagattt gaaggttttt tctacgcgag taccggtcag cagacgacgc
     8581 agtttaacgc gagcaaatgc ctggccttta cccggtttta cgaattcact cgcttcaacc
     8641 gcgtaaggtt cgccgtctaa catgatttta agaccagcac gaaaatcgtt gctatagtac
     8701 gttgccataa ggccctctga aatttgttaa ttggtagcta agccacaaaa tggcgcatat
     8761 tgtaacccta aataccccat ccagagaaga ttggttaacg caacttgccg atgttgtgac
     8821 cgatcctgat gaacttctgc gtcttttgaa tatagacgcg gacgaaaaac tgttggccgg
     8881 acgcagcgcc aaaaagctgt ttgccctgcg tgtgccccgc tcatttatcg atcgcatgga
     8941 gaaaggcaat ccggacgatc ctcttttgcg tcaggtactt acctcgcaag atgagtttgt
     9001 cgtcgcgtcc ggattctcca ccgacccact ggaagaacag cacagcgtag tgcctggttt
     9061 gttgcataaa taccacaacc gggcgctttt gctggtcaaa ggcggctgcg cggtaaattg
     9121 ccgctattgc ttccgtcgcc acttccccta tgccgaaaat cagggcaaca agcgtaactg
     9181 gcagactgca cttgagtatg ttgctgcgca tccggaactg gacgagatga ttttctccgg
     9241 cggcgatccg ctgatggcga aagatcacga gctggactgg ttgctcacac aactggaagc
     9301 catcccgcat atcaaacgtc tgcggattca cagtcgtctg ccgattgtga tcccggcacg
     9361 catcacagat gcgctggttg aacgcttttc acattctacg ctgcaaatcc tgctggtgaa
     9421 tcacatcaac catgccaatg agatagatga aacattccgt caggcgatgg ctaagttgcg
     9481 ccgggtaggc gttactttgc tgaaccagag cgttctgtta cgtgatgtga acgataacgc
     9541 acaaacgctg gcaaacctga gtaatgcgtt gttcgatgcc ggcgtgatgc cgtattacct
     9601 gcatgtgctc gataaagtac agggcgcagc gcattttatg gtgagtgatg acgaagcacg
     9661 gcagattatg cgtgagttgc tgacattggt gtcgggatat ctggtgccga aactggcgcg
     9721 agaaattggc ggcgaaccca gcaaaacgcc gctggatctc cagctacgcc agcagttact
     9781 gattaaacag ggaagttaaa cattaaaatt gcctgatgcg ctacgcttat caggcctaca
     9841 tcgtgcattg aaattgaatg gatttgcaat gaactgtagg ccggataagg cgtttacgcc
     9901 gcatccggca agagcaacaa acgcaagtac agcaacctgt cattaaactg agaaatttaa
     9961 tctttgcccg ttgcataacc tttaattatt catatgcatt gctgttgtta ctttttatat
    10021 agctaacacc aataattaac ctttcttttc tgtttatata gagtgagcac ggctatttat
    10081 gttattttaa caactgttac taccaagccc atttatctgg cttataaatt aaaattaatt
    10141 atttaattga gaaatggtta gggagaacct acatggccat aagcatcaag ggtgttaata
    10201 ccggtgttat tcgcaagagt aataatttca ttgcactggc gctgaaaatt aaagaacctc
    10261 gcaataaaga atcgttgttc tttatgtctg tcatggaact gcgcgacctg ctgattgcgc
    10321 tggaaagtcg tctgcatcaa aagcataaac tggatgctgc tgcacgcctt cagtatgagc
    10381 aagctcgcga taaagtcatt aagaaaatgg cagaaaacat cccagaaatt ctggttgatg
    10441 agcttaaaaa tgccgatatt aatcgtcggg ttaacacgct ggaacttacc gataatcaag
    10501 gcgaaaatct taccttcgta ttaacgctac atgacggtag caaatgtgag ttagtcgtca
    10561 atgagttgca gattgaaatg ctagcgcgag caatcattca tgcaattaat aatgcggaaa
    10621 tgcgtgaact ggcattacgt attacctcac tgttagattt cctgccgtta tatgacgttg
    10681 actgccagga aaatggcaat ctggaatatg acacctattc ccaaccggaa tggaaacata
    10741 acttgttcga ccattatctg gcggtgcttt accgctttaa agatgaaagt ggcaaagaac
    10801 aatttagcgg cgcagtggtg aaaacgcgtg aagcaacgcc gggtaaagaa gtagaggcga
    10861 tcactcgccg aatgcttgat ttcagcccac gactgaaaaa actcgcgggt gtgccatgtc
    10921 aggtctatgt tcgcaccgta gcggcgaata acgcccaacc gctaacccag gatcaatgct
    10981 tacgcgcgct gcatcactta cgtgttcaat ccaccagcaa aactgcacca caggcgaaat
    11041 aatctcatct ttgctaatgc gaggctggag ccatccagcc tgaaatgact gataacgtga
    11101 tcgttggtca tgccggatgc ggcgtaaacg ccttatccgg cctacaaatt ctcaagcatt
    11161 caatcagttg caatgcctgc tgtaggcctg ataagcgaag cgcatcaggc aataatacgt
    11221 ttgtcaccca gcctctggat cacatcagtt cgggcactta taaacctgac cgataatctg
    11281 gctatccgtc gggacaaaac tggacaacat tccctgcgac gggctgctga tgccataaat
    11341 cacgttaccg cccattgcag ccgcctggtt gcgcagatcg tttgctgcgc cgcgcataga
    11401 accgccctct tctccgtgtt gcccggaaag ccagttgctt tgcttacctg tcgcagtacc
    11461 aatcagctgg cactctgcgc ctggctgctc gtccacaatg cgtacactct gaccggcagc
    11521 actcaattcg ttgctggagc tacaacccgc catcagtagc gcggcaccga caatccctgc
    11581 taagtatttt acgtgcatgt tattccccat aatcaatgag ctggacgcca ctcgcgtcgt
    11641 ccgtgtctga atcttatact agaaagatga ccaaaagaaa aacccccaga catttctgcc
    11701 cgggggtttg tttatttctg cgaggtgcag ggcaattaca tcatgccgcc catgccaccc
    11761 atgccgccca taccgccagc agcgcctaag tcagctgcat cgtttttcgg caggtcggta
    11821 accatgcact cggtggtgat catcaggcca gccacagaag ccgcgtactg cagagcagaa
    11881 cgggttactt tggttggatc caagataccc atgtcgatca tgttgccgta ttcttcggtt
    11941 gctgcgttgt aaccgtagtt gccgtcgccg cctttaacag tgttagcaac aacagacggt
    12001 tcttcgccgc agttcaatac gatctgacgc agcggagctt ccattgcacg cagtgcaact
    12061 ttgataccca cgttctggtc ttcgttctga ccacgcaggt cagccagttt agacgctacg
    12121 cggatcagcg caacaccacc accagcaacc acgccttctt ctaccgcagc acgggtcgcg
    12181 tgcagggcat cttcaacgcg tgcttttttc tctttcattt caacttcggt agcagcacct
    12241 actttgataa ctgcaacgcc gcctgccagt ttcgctacgc gctcctgcag tttttcacgg
    12301 tcgtagtcag aagttgcttc ttcaatctgc tgacggatct gagcaacacg gccctggatt
    12361 gcagcttctt cacccacgcc atcaatgatg gtggtggtgt ctttgttgat cacaacacgt
    12421 ttagcctgac ccaggtcttc cagggttgct ttttccagct ccataccgat ctcttcagag
    12481 attacggtac cgccagtcag ggttgcgata tcctgcagca tagctttacg gcgatcgccg
    12541 aagcccggag ctttaaccgc agcaactttc acgatgccac gcatggtgtt aacaaccaga
    12601 gttgccagcg cttcgccttc aacatcttca gcgatgatca gcagcggttt acctgcttta
    12661 gcaacggctt ccagaaccgg cagcatttcg cggatgttgg agattttctt gtcagccagc
    12721 aggatgaacg ggctttccag ttctactgcg ccagtttccg gcttgttgat gaagtaagga
    12781 gacaggtagc cacggtcgaa ctgcatacct tcaaccacgt ccagttcgtc ctgcagaccg
    12841 gtaccgtctt caacggtgat aacgccttct ttaccgactt tgtccatcgc ttcagcgatc
    12901 agtttaccta cggtttcgtc ggagttagcg gagatggtac caacctgagc aatcgcttta
    12961 gagtcagagc atggtacgga cagcgctttc agttcttcaa ctgcagcggt aacagctttg
    13021 tcgataccac gtttcaggtc catcgggttc atgcccgcag caactgcttt cagaccctca
    13081 gtgatgatag cctgagccag tacggttgca gtggtggtac cgtcgcctgc agcgtcgttc
    13141 gctttagagg caacttcttt caccatctgc gcacccatat tttcgaactt gtcttccagt
    13201 tcgatttcac gagcaacgga aacaccatct ttggtgatgg tcggtgcacc gaaagattta
    13261 tccagaacta cgttacggcc tttcggaccg agggtaactt tcactgcatc tgccagtacg
    13321 tttacgccgc gcagcatttt cacacgagcg tcgttaccga attttacgtc tttagctgcc
    13381 attatcttta ttccttaaat tcgtatgttc agtgtcgtgc gaggattacg cttcaacaat
    13441 tgccagaatg tcgctttcgg acatgatcaa cacttcttca ttgtcgatct tctcagattt
    13501 cacaccgtag ccatcgttga aaataacgat gtcgccaact ttcacatcca gcggcttcac
    13561 ttcgccattt tcaaggatac ggccattgcc gacagccagc acttcgccgc gggtggattt
    13621 agccgctgca gagccggtca gaacgatgcc gccagcagat ttagtttcaa cttctttacg
    13681 cttgacgatc acgcgatcat gcaatggacg aatattcatt gataactctc ctttgagaaa
    13741 gtccgtatct gttatgggtg acgccggagc ttacgtggtt tcccggctgg tgaccagaga
    13801 aatggggatg aggattcgcc ccttcaaggg ggaaaaagaa aaaaaattct gatcagcaca
    13861 aaatcgggtg aaaaccctga ttcacctcac atttcatcgc aatttcttca tcgccgtcat
    13921 aagcgaatct gattgtgcta ccatcgaaaa tctacgcagt tgcccaaaat ttgggcgcaa
    13981 tcggatatca acccatgagt ggactcaaac aagaactggg gctggcccag ggcattggcc
    14041 tgctatcgac gtcattatta ggcaccggcg tgtttgccgt tcctgcgtta gctgcacagg
    14101 tagcaggcaa taacagcctg tgggcgtggc ccgttttgat tatcttagtg ttcccgattg
    14161 cgattgtgtt tgcgattctg ggtcgccact atccctgcgc aggcggtgtc gcgcacttcg
    14221 tcggtatggc gtttggttcg cggcttgagc gagtcaccgg ctggttgttt ttatcggtca
    14281 ttcccgtggg tttgccagcc gcgctacaaa ttgccgccgg gttcggccag gcaatgtttg
    14341 gctggcatag ctggcaactg ttgttggcag aactcggtac gctggcgctg gtgtggtata
    14401 tcggtactcg cagtgccagt tccagtgcta atctacaaac cgttattgcc ggacttatcg
    14461 tcgcgctgat tgtcgctatc tggtgggcgg gcgatatcaa acctgcgaat atccccttcc
    14521 cggcacctgg taatatcgaa cttaccgggt tatttgctgc gttatcagtg atgttctggt
    14581 gttttgtcgg tctggaagca tttgcccatc ttgcctcgga atttaaaaat ccagagcgtg
    14641 attttcctcg cgcattgatg attggtctgc tgctggcagg attagtctac tggggctgta
    14701 cggtagtcgt cttacacttc gacgcctatg gtgaaaaaat ggcggcggca gcatcgcttc
    14761 caaaaattgt agtgcaactg ttcggtgtag gagcgttatg gattgcctgc gtgattggct
    14821 atctggcctg ctttgccagt ctcaacattt atatacagag cttcgcccgc ctggtctggt
    14881 cgcaggcgca acataatcct gaccactacc tggcacgcct ctcttctcgc catatcccga
    14941 ataatgccct caatgcggtg ctcggctgct gtgtggtgag cactttggtg attcatgctt
    15001 tagagatcaa tctggacgct cttattattt atgccaatgg catctttatt atgatttatc
    15061 tgttatgcat gctggcaggc tgtaaattat tgcaaggacg ttatcgacta ctggcggtgg
    15121 ttggcgggct gttatgcgtt ctgttactgg caatggtcgg ctggaaaagt ctctatgcgc
    15181 tgatcgtgct ggcggggtta tggctgttgc tgccaaaacg aaaaacgccg gaaaatggca
    15241 taatcacata atccggcgtt tcgacattaa tcctggcgat cgtctttatg atcaaggcgg
    15301 tcgcgctcat catcctttcg ctggtactca ccatcaaaag tattaccgcc accggtcccg
    15361 gcgctaaaac cgccgcctgg catacgagaa aagcgcaaat gcggcatcaa cttcactgtc
    15421 agatgctttt gcaccggcgg taataaaagc agaagaccga ggaagtcggt gaaaaagccc
    15481 ggtaataaaa gcagcaaacc ggcaatgatc agcgaaacac ttttaatcat ctccgccgct
    15541 gggttttcac ccgccgccat tttttgctgc atcagcacga aattcttaaa gccctggtta
    15601 cgtaccagtg acatcccgat aactgacgtg aatataacca gcacgagggt cagcaatacc
    15661 cccaatacat gggcaacctg aataaagatt gaaatctcaa tatagacata aaggaaaatg
    15721 gcaataaaag gtaaccagcg caaaggtttc tcctgtaata gcagccggta aaacccggct
    15781 acctgaatgg gttgcgaatc gcgttcagct tatattgtgg tcattagcaa aatttcaaga
    15841 tgtttgcgca actatttttg gtagtaatcc caaagcggtg atctatttca caaattaata
    15901 attaaggggt aaaaaccgac acttaaagtg atccagatta cggtagaaat cctcaagcag
    15961 catatgatct cgggtattcg gtcgatgcag gggataatcg tcggtcgaaa aacattcgaa
    16021 accacatata ttctgtgtgt ttaaagcaaa tcattggcag cttgaaaaag aaggttcaca
    16081 tgtcaaacaa cattcgtatc gaagaagatc tgttgggtac cagggaagtt ccagctgatg
    16141 cctactatgg tgttcacact ctgagagcga ttgaaaactt ctatatcagc aacaacaaaa
    16201 tcagtgatat tcctgaattt gttcgcggta tggtaatggt taaaaaagcc gcagctatgg
    16261 caaacaaaga gctgcaaacc attcctaaaa gtgtagcgaa tgccatcatt gccgcatgtg
    16321 atgaagtcct gaacaacgga aaatgcatgg atcagttccc ggtagacgtc taccagggcg
    16381 gcgcaggtac ttccgtaaac atgaacacca acgaagtgct ggccaatatc ggtctggaac
    16441 tgatgggtca ccagaaaggt gaatatcagt acctgaaccc gaacgaccat gttaacaaat
    16501 gtcagtccac taacgacgcc tacccgaccg gtttccgtat cgcagtttac tcttccctga
    16561 ttaagctggt agatgcgatt aaccaactgc gtgaaggctt tgaacgtaaa gctgtcgaat
    16621 tccaggacat cctgaaaatg ggtcgtaccc agctgcagga cgcagtaccg atgaccctcg
    16681 gtcaggaatt ccgcgctttc agcatcctgc tgaaagaaga agtgaaaaat atccaacgta
    16741 ccgctgaact gctgctggaa gttaaccttg gcgcaacagc aatcggtact ggtctgaaca
    16801 cgccgaaaga gtactctccg ctggcagtga aaaaactggc tgaagtcact ggcttcccat
    16861 gcgtaccggc tgaagacctg atcgaagcga cctctgactg cggcgcttat gttatggttc
    16921 acggcgcgct gaaacgcctg gctgtgaaga tgtccaaaat ctgtaacgac ctgcgcttgc
    16981 tctcttctgg cccacgtgcc ggcctgaacg agatcaacct gccggaactg caggcgggct
    17041 cttccatcat gccagctaaa gtaaacccgg ttgttccgga agtggttaac caggtatgct
    17101 tcaaagtcat cggtaacgac accactgtta ccatggcagc agaagcaggt cagctgcagt
    17161 tgaacgttat ggagccggtc attggccagg ccatgttcga atccgttcac attctgacca
    17221 acgcttgcta caacctgctg gaaaaatgca ttaacggcat cactgctaac aaagaagtgt
    17281 gcgaaggtta cgtttacaac tctatcggta tcgttactta cctgaacccg ttcatcggtc
    17341 accacaacgg tgacatcgtg ggtaaaatct gtgccgaaac cggtaagagt gtacgtgaag
    17401 tcgttctgga acgcggtctg ttgactgaag cggaacttga cgatattttc tccgtacaga
    17461 atctgatgca cccggcttac aaagcaaaac gctatactga tgaaagcgaa cagtaatcgt
    17521 acagggtagt acaaataaag aaggcacgtc agatgacgtg ccttttttct tgtgaacagt
    17581 aacttaaaaa caacaaccta atatcaactt gttaaaaaac aaggaaggct aatatgctag
    17641 ttgtagaact catcatagtt ttgctggcga tcttcttggg cgccagattg gggggaatag
    17701 gtattggttt tgcaggcgga ttgggggtgc tggttcttgc cgctattggc gttaaacccg
    17761 gtaacatccc gttcgatgtc atttccatta tcatggcggt tatcgccgct atttctgcca
    17821 tgcaggttgc tggcggtctg gactatctgg ttcatcagac agaaaagctg ctgcgccgta
    17881 acccgaaata catcacgatc ctcgcaccta tcgtgaccta tttcctgaca atctttgctg
    17941 gtactggcaa catctctctg gcgacactgc cagttatcgc tgaagttgcg aaggaacaag
    18001 gcgttaaacc ttgccgtccg ctctctactg cagtggtatc cgcgcagatt gcgatcaccg
    18061 catcgccaat ctcagcggca gtggtttaca tgtcttccgt gatggaaggt catggcatca
    18121 gctacctcca tctgctctcc gtggtcatcc cgtccaccct gctggcggtt ctggtgatgt
    18181 cctttctggt cactatgctg ttcaactcca aactctctga cgatccgatt tatcgcaagc
    18241 gtctggaaga gggcctggtt gaactgcgcg gtgaaaagca gattgaaatc aaatccggtg
    18301 caaaaacgtc cgtctggctg ttcctgctgg gcgtagttgg cgtggttatc tatgcaatca
    18361 tcaacagccc aagcatgggt ctggttgaaa aaccgctgat gaacaccacc aacgcaatcc
    18421 tgatcatcat gctcagcgtt gcaactctga ccaccgttat ctgtaaagtc gataccgaca
    18481 acatcctcaa ctccagcacc ttcaaagcag gtatgagcgc ctgtatttgt atcctgggtg
    18541 ttgcgtggct gggcgatact ttcgtttcca acaacatcga ctggatcaaa gataccgctg
    18601 gtgaagtgat tcagggtcat ccgtggctgc tggccgtcat cttcttcttt gcttctgctc
    18661 tgctgtactc tcaggctgca accgcaaaag cactgatgcc gatggctctg gcactgaacg
    18721 tttcaccgct gaccgctgtt gcttctttcg ctgcggtgtc tggtctgttc attctgccga
    18781 cctacccgac gctggttgct gcggtacaga tggatgacac gggtactacc cgtatcggta
    18841 aattcgtctt caaccatccg ttcttcatcc cgggtactct gggtgttgcc ctggccgttt
    18901 gcttcggctt cgtgctgggt agcttcatgc tgtaatgatc aatcgcgggg cgttcacgcc
    18961 ccgctttctt tcccgccgac taacatcctt cccccgtacg ttgtatagtg acctctctct
    19021 tgcggttcca tctgttcttg cgaggtgttt atgcttgatg aaaaaagttc gaataccgcg
    19081 tctgtcgtgg tgctatgtac ggcaccagat gaagcgacag cccaggattt agctgccaaa
    19141 gtgctggcgg aaaaactggc ggcctgcgcg accttgatcc ccggcgctac ctctctctat
    19201 tactgggaag gtaagctgga gcaagaatac gaagtgcaga tgattttaaa aactaccgta
    19261 tctcaccagc aggcactgct ggaatgcctg aagtctcatc atccatatca aaccccggaa
    19321 cttctggttt tacctgttac acacggagac acagattacc tctcatggct caacgcatct
    19381 ttacgctgat cctgctactt tgcagcactt ccgtttttgc cggattattc gacgcgccgg
    19441 gacgttcaca atttgtcccc gcggatcaag cctttacttt tgattttcag caaaaccaac
    19501 atgaccttaa tctgacctgg cagatcaaag acggttacta cctctaccgt aaacagatcc
    19561 gcattacgcc ggaacacgcg aaaattgccg acgtgcagct gccgcaaggc gtctggcatg
    19621 aagatgagtt ttacggcaaa agcgagattt accgcgatcg gctgacgctt cccgtaacca
    19681 tcaaccaggc gagtgcggga gcgacgttaa ctgtcaccta ccagggctgt gctgatgccg
    19741 gtttctgtta tccgccagaa accaaaaccg ttccgttaag cgaagtggtc gccaacaacg
    19801 cagcgtcaca gcctgtgtct gtttcgcagc aagagcagca caccgcgcaa ttgccctttt
    19861 ccgcgctctg ggcgttgttg atcggtattg gtatcgcctt tacgccatgc gtgctgccaa
    19921 tgtacccact gatttctggc atcgtgctgg gtggtaaaca gcggctctcc actgccagag
    19981 cattgttgct gacctttatt tatgtgcagg ggatggcact gacttacacg gcgctgggtc
    20041 tggtagttgc cgccgcaggg ttacagttcc aggcggcgct acagcaccca tacgtgctca
    20101 ttggcctcgc catcgtcttt accttgctgg cgatgtcaat gtttggcttg tttactctac
    20161 aactcccctc ttcgctgcaa acacgtctca cgttgatgag caatcgccaa cagggcggct
    20221 cacctggcgg tgtgtttgtt atgggggcga ttgccggact tatctgttca ccatgcacca
    20281 ccgcaccgct tagcgcgatt ctgctgtata tcgcccaaag cgggaacatg tggctgggcg
    20341 gcggcacgct ttatctctat gcgttgggca tgggcctgcc gctgatgcta attaccgtct
    20401 ttggtaaccg cttgctgccg aaaagcggcc cgtggatgga acaagtcaaa accgcgtttg
    20461 gttttgtgat cctcgcactg ccggtcttcc tgctggagcg agtgattggt gatgtatggg
    20521 gattacgctt gtggtcggcg ctgggtgtcg cattctttgg ctgggccttt atcaccagcc
    20581 tacaggctaa acgcggttgg atgcgcgtgg tgcaaataat cctgctggca gcggcattgg
    20641 ttagcgtgcg cccacttcag gattgggcat ttggtgcgac gcataccgcg caaactcaga
    20701 cgcatctcaa ctttacacaa atcaaaacgg tagatgagtt aaatcatgcg ctcgttgaag
    20761 ccaaaggcaa accggtgatg ttagatcttt atgccgactg gtgcgtcgcc tgtaaagagt
    20821 ttgagaaata caccttcagc gacccgcagg tgcaaaaagc gttagcagac acggtcttac
    20881 ttcaggccaa catcacggcc aacgacgcac aagatgtggc gctgttaaag catcttaatg
    20941 tccttggcct accgacaatt ctcttttttg acggacaagg ccaggagcat ccacaagcac
    21001 gcgtcacggg ctttatggat gctgaaacct tcagcgcaca tttgcgcgat cgccaaccgt
    21061 gaacgacact tgcagcggga aagacggagg aaaatagcgt gcaacgtgaa gatgtactgg
    21121 gagaagccct gaaattatta gaattacaag ggattgccaa caccacgctg gagatggttg
    21181 ctgaacgtgt ggattatcca ctggacgagc tacgccgctt ctggccagac aaagaggcaa
    21241 tcctctacga tgcgctgcgt tatcttagcc aacagataga tgtctggcgt cgtcagctga
    21301 tgctggacga aacgcaaacc gccgaacaaa agcagctggc acgttatcag gcgttatcgg
    21361 agtgcgttaa aaacaaccgc tatccgggct gtctatttat cgctgcctgt acgttttatc
    21421 ccgatcctgg ccaccctatt catcaactgg ccgatcagca aaaaagcgcg gcctacgatt
    21481 tcacccacga actgttaacc acactggaag ttgacgatcc ggcgatggta gcaaagcaga
    21541 tggaactggt gctggaaggc tgtttaagcc gaatgctggt gaatcgtagc caggcggatg
    21601 tcgacactgc acatcggctg gcggaagata tcctgcgctt cgcccgctgc cgccagggtg
    21661 gtgcattgac ctgacagaaa cacagaaaag aagcgatttg ccgcaatctt aagcagttga
    21721 atcgctttta ctgaaattag gttgacgaga tgtgcagatt acggtttaat gcgccccgtt
    21781 gcccggatag ctcagtcggt agagcagggg attgaaaatc cccgtgtcct tggttcgatt
    21841 ccgagtccgg gcaccaaatt catatcaacg gacctctacg gaggttcgtt tttcgtttca
    21901 gaacgccacg atttaagcgt tctgcctaca aatcaattct accgaactca accagattcc
    21961 ccccacatca accccattgt gtgggtataa ttgcgggcat accccagttc gacagaattt
    22021 gtaccctctt taacgcattc agaaggctga actatggcac tgactgacgc aaaaatccgg
    22081 gctgcaaagc ccactgacaa ggcttataaa ctcactgacg ggactggcat gttcctgctg
    22141 gtacatccta atggctcccg ttactggcgt ctccgttatc gtattctggg taaggagaag
    22201 actctggcac ttggtgtgta tccagaagtt tctctctccg aagctcgtac aaaacgggat
    22261 gaggcccgaa aactgatttc ggagggggtt gacccttgcg aacagaaaag agctaaaaaa
    22321 gtagtccctg atttacagct ctcttttgaa catattgcgc gacgctggca tgccagtaat
    22381 aaacaatggg cacaatcaca cagcgataaa gtactcaaaa gcctcgagac tcacgttttc
    22441 ccctttatcg gcaaccggga tatcacaaca ctcaataccc cggatctgct tatccctgtt
    22501 cgtgctgcag aagctaaaca aatttatgaa atcgccagtc gtctgcagca aagaatatct
    22561 gccgtaatgc gttatgccgt acagtctggc atcatcagat ataatcctgc tctggatatg
    22621 gctggcgcat tgactacggt aaaacgccag catcgccccg ctcttgatct ttctcgcctg
    22681 cctgaacttt tgtcgcgtat tggcagttac aaagggcaaa ctgtcaccca gcttgccgtt
    22741 atgctgaatt tactggtttt tattcgttcc agtgaactca gatacgcccg ctggtctgaa
    22801 attgatattg acaatgccat gtggactatt ccagccgaac gcgaacccct gccaggcgta
    22861 aaattctcac accggggctc caagatgcga acaccacatc ttgtgccact cagcaaacag
    22921 gctgtagcca tactgacaga actacagaca tgggctggtg aaaatggtct gatctttacg
    22981 ggagcacatg acccgcgtaa accaatcagt gaaaatgtaa tgaacgcatc
//
LOCUS       DADMJB010000051        22933 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.051, whole genome shotgun sequence.
ACCESSION   DADMJB010000051 DADMJB010000000
VERSION     DADMJB010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22933)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22933)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22933
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.051"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..745)
                     /locus_tag="JN078_001807"
     CDS             complement(<1..745)
                     /locus_tag="JN078_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9041039.1"
                     /translation="MAMSEQTQPVAGAAASTTKARTSFGILGAISLSHLLNDMIQSLI
                     LAIYPLLQSEFSLTFMQIGMITLTFQLASSLLQPVVGYWTDKYPMPWSLPIGMCFTLS
                     GLVLLALAGSVGAVLLAAALVGTSSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFG
                     SSLGPLLTAVIIAPYGKGNVAWFVLAALLAIVVLAQISRWYSAQHRMNKGKPKATIIN
                     PLPRNKVVLAVSILLILIFSKYFYMASISS"
     gene            963..2615
                     /locus_tag="JN078_001808"
     CDS             963..2615
                     /locus_tag="JN078_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="HAY9041040.1"
                     /translation="MKLLQRGVALALLTTFTLASETALAYEQDKTYKITVLHTNDHHG
                     HFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFR
                     GMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKR
                     QDLKIAVIGLTTDDTAKIGNPEYFTDVEFRKPADEAKLVIQELQQTEKPDIIIAATHM
                     GHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQAPVCMAAENKKQVDYVPGTPCK
                     PDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVTWEDGKSERVL
                     YTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGDRDKVRFVQTNMGRLILAA
                     QMDRTGADFAVMSGGGIRDSIEAGDISYKNVLKVQPFGNVVVYADMTGKEVIDYLTAV
                     AQMKPDSGAYPQFANVSFVTKDGKLNDLKIKGEPVDPAKTYRMATLNFNATGGDGYPR
                     LDNKPGYVNTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSWQ"
     gene            complement(2652..3131)
                     /gene="ybaK"
                     /locus_tag="JN078_001809"
     CDS             complement(2652..3131)
                     /gene="ybaK"
                     /locus_tag="JN078_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006818871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK"
                     /protein_id="HAY9041041.1"
                     /translation="MTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQV
                     YKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAKKVEMADPMAAQRSTGYLVGG
                     ISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARRD"
     gene            complement(3335..4129)
                     /locus_tag="JN078_001810"
     CDS             complement(3335..4129)
                     /locus_tag="JN078_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041042.1"
                     /translation="MDLLYRVKTLWAALRGNHYTWPAIDITLPGNRHFHLIGSIHMGS
                     HDMTPLPTRLLKKLKNADALIVEADVSTSDTPFANLPTCEALEERINEEQLQNLQHIS
                     QEMGISPSLFSTQPLWQIAMVLQATQAQKLGLRAEYGIDYQLLQAAKQQHKPVIELEG
                     AENQITMLLQLPDKGLALLDDTLTHWHTNARLLQQMMSWWLNAPPQNNDITLPNTFSQ
                     SLYDVLMHQRNLAWRDKLRAMPPGRYVVAVGALHLYGEGNLPQMLR"
     gene            4267..4608
                     /locus_tag="JN078_001811"
     CDS             4267..4608
                     /locus_tag="JN078_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HAY9041043.1"
                     /translation="MKQATRKPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSTL
                     INNNRKLTTEMAFRLAKVFDTTVDFWLNLQAAVDLWEVENNMRTQEELGRIETVAEYL
                     ARREERAKKVA"
     gene            complement(4823..7327)
                     /gene="copA"
                     /locus_tag="JN078_001812"
     CDS             complement(4823..7327)
                     /gene="copA"
                     /locus_tag="JN078_001812"
                     /EC_number="7.2.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-exporting P-type ATPase CopA"
                     /protein_id="HAY9041044.1"
                     /translation="MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSITEAHVT
                     GTASAEQLIETIKQAGYDASVSHPKAKPLAESSIPSEALTAVSEALPAATADDDDSQQ
                     LLLSGMSCASCVTRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYG
                     AEAIEDDAKRRERQQETAVATMKRFRWQAIVALAVGIPVMVWGMIGDNMMVTADNRSL
                     WLVIGLITLAVMVFAGGHFYRSAWKSLLNGAATMDTLVALGTGVAWLYSMSVNLWPQW
                     FPMEARHLYYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTAEGEK
                     SVPLAEVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGEPIPQQKGEGESVHAGT
                     VVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALI
                     SAAIWYFFGPAPQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDA
                     DALQRASTLDTVVFDKTGTLTEGKPQVVAVKTFADVDEAQALRLAAALEQGSSHPLAR
                     AILDKAGDMQLPQVNGFRTLRGLGVSGEAEGHALLLGNPALLNDQQVDTKAIEADISA
                     QASQGATPVLLAIDGKVVALLAVRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANA
                     IAKEAGIDEVIAGVLPDGKAEAIKRLQSEGRQVAMVGDGINDAPALAQADVGIAMGGG
                     SDVAIETAAITLMRHSLMGVADALAISRATLRNMKQNLLGAFIYNSIGIPVAAGILWP
                     FTGTLLNPVVAGAAMALSSITVVSNANRLLRFKPKE"
     gene            7589..8521
                     /gene="glsA"
                     /locus_tag="JN078_001813"
     CDS             7589..8521
                     /gene="glsA"
                     /locus_tag="JN078_001813"
                     /EC_number="3.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase A"
                     /protein_id="HAY9041045.1"
                     /translation="MLDANKLQQAVDQAYTQFHSLNGGQNADYIPFLANVPGQLAVVA
                     IVTCDGNVYSAGDSDYRFALESISKVCTLALALEDVGPQAVQDKIGADPTGLPFNSVI
                     ALELHGGKPLSPLVNAGAIATTSLINAENIEQRWQRILHIQQQLAGEQVALSDEVNQS
                     EQTTNFHNRAIAWLLYSAGYLYCDAMEACDVYTRQCSTLINTVELATLGATLAAGGLN
                     PLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGI
                     AAFSPPLDEEGNSVRGQKMVASVAKQLGYNVFKG"
     gene            8524..9816
                     /locus_tag="JN078_001814"
     CDS             8524..9816
                     /locus_tag="JN078_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAY9041046.1"
                     /translation="MMNTEGNNGNKPLGLWNVVSIGIGAMVGAGIFALLGQAALLMEA
                     STWVAFAFGGIVAMFSGYAYARLGASYPSNGGIIDFFRRGLGNGVFSLALSLLYLLTL
                     AVSIAMVAHAFGAYAVQFLHEGSQEEHLILLYALGSIAVMTLFNSLSNHAVGRLEVIL
                     VGIKMMILLLLIIAGVWSLQPAHISVSAPPSSGAFFSCIGITFLAYAGFGMMANAADK
                     VKDPQVIMPRAFLVAIGVTTLLYISLALVLLSDVSALELEKYADTAVAQAASPLLGHV
                     GYVIVVIGALLATASAINANLFAVFNIMDNMGSERELPKLMNKSLWRQSTWGNIIVVV
                     LIMLMTAALNLGSLASVASATFLICYLAVFVVAIRLRHDIHASLPILIVGTLVMLLVI
                     VGFIYSLWSQGSRALIWIIGSLLLSLIVAMVMKRNKTV"
     gene            9941..10348
                     /locus_tag="JN078_001815"
     CDS             9941..10348
                     /locus_tag="JN078_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator CueR"
                     /protein_id="HAY9041047.1"
                     /translation="MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHL
                     NELTLLRQARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMR
                     DQLLALANACPGDDSADCPIIENLSGCCHHRAG"
     gene            complement(10349..10807)
                     /locus_tag="JN078_001816"
     CDS             complement(10349..10807)
                     /locus_tag="JN078_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415021.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HAY9041048.1"
                     /translation="MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGL
                     VVWLVPLGWEWQGVMFAILTLLAAWLWWKWLSRRVREQKHSDSHLNQRGQQLIGRRFV
                     LESPLVNGRGHMRVGDSSWPVSASEDLGAGTHVEVIAIEGITLHIRAVSS"
     gene            complement(10804..11721)
                     /locus_tag="JN078_001817"
     CDS             complement(10804..11721)
                     /locus_tag="JN078_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH/Band 7/PHB domain protein"
                     /protein_id="HAY9041049.1"
                     /translation="MLIFIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPG
                     LSLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVS
                     NLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEATNPWGIKVTRIEIR
                     DVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQILKAEGERQSA
                     FLQAEARERSAEAEARATKMVSEAIASGDIQAVNYFVAQKYTEALQQIGSSSNSKVVM
                     MPLEASSLMGSIAGIAELVKDSANKRTQP"
     gene            11867..12544
                     /gene="fetA"
                     /locus_tag="JN078_001818"
     CDS             11867..12544
                     /gene="fetA"
                     /locus_tag="JN078_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter ATP-binding protein FetA"
                     /protein_id="HAY9041050.1"
                     /translation="MQENSPLLQLQNVGYLAGDAKILNNINFSLRAGEFKLITGPSGC
                     GKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEIYRQQVSYCAQTPTLFGDTVYDNLI
                     FPWQIRNRQPDPAIFLDFLERFALPDSILTKNIAELSGGEKQRISLIRNLQFMPKVLL
                     LDEITSALDESNKHNVNEMIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQ
                     EARYELA"
     gene            12531..13310
                     /gene="fetB"
                     /locus_tag="JN078_001819"
     CDS             12531..13310
                     /gene="fetB"
                     /locus_tag="JN078_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308581.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron export ABC transporter permease subunit
                     FetB"
                     /protein_id="HAY9041051.1"
                     /translation="MNSHNITNESLALALMLVVVAILISHKEKLALEKDIFWSVGRAI
                     IQLIIVGYVLKYIFSVDDASLTLLMVLFICFNAAWNAQKRSKYIAKAFISSFIAITVG
                     AGITLAVLILSGSIEFIPMQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKL
                     SLGATPKQASAILIRDSIRAALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQ
                     IMVTFMLLSTASLSTIIACYLTYRKFYNSRHQLVVTQLKKK"
     gene            complement(13373..14227)
                     /gene="cnoX"
                     /locus_tag="JN078_001820"
     CDS             complement(13373..14227)
                     /gene="cnoX"
                     /locus_tag="JN078_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308582.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperedoxin"
                     /protein_id="HAY9041052.1"
                     /translation="MSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPI
                     LESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAI
                     RALLDKVLPREEELKAQQAMQLMQEGNYTDALPLLKDAWQLSNQNGEIGLLLAETLIA
                     LNRSEDAEAVLKTIPLQDQDTRYQGLVAQIELLKQAADTPEIQQLQQQVAENPEDAAL
                     ATQLALQLHQVGRNEEALELLFGHLRKDLTAADGQTRKTFQEILAALGTGDALASKYR
                     RQLYALLY"
     gene            complement(14288..15097)
                     /gene="ybbO"
                     /locus_tag="JN078_001821"
     CDS             complement(14288..15097)
                     /gene="ybbO"
                     /locus_tag="JN078_001821"
                     /EC_number="1.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(+)-dependent aldehyde reductase"
                     /protein_id="HAY9041053.1"
                     /translation="MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLA
                     GCRKPDDVERMNNMGFTGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGP
                     LSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYA
                     ASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARF
                     TLGPEAVVDKVRHAFISEKPKMRYPVTLVTWAVMVLKRLLPGRVMDKILQG"
     gene            complement(15087..15710)
                     /gene="tesA"
                     /locus_tag="JN078_001822"
     CDS             complement(15087..15710)
                     /gene="tesA"
                     /locus_tag="JN078_001822"
                     /EC_number="3.1.1.5"
                     /EC_number="3.1.2.14"
                     /EC_number="3.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005225520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional acyl-CoA thioesterase I/protease
                     I/lysophospholipase L1"
                     /protein_id="HAY9041054.1"
                     /translation="MNFNNVFRWHLPFLFLVLLTFRAAAADTLLILGDSLSAGYRMSA
                     SAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLR
                     GFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVP
                     LLPFFMEEVYLKPQWMQDDGIHPNRDAQPFIADWMAKQLQPLVNHDS"
     gene            15681..16367
                     /locus_tag="JN078_001823"
     CDS             15681..16367
                     /locus_tag="JN078_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAY9041055.1"
                     /translation="MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALVGE
                     SGSGKSTLLAILAGLDDGSSGEVSLVGQPLHNMDEEARAKLRAKHVGFVFQSFMLIPT
                     LNALENVELPALLRGESSAESRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA
                     FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIMVTHDLQLAARCDRCLR
                     LVNGQLQEEA"
     gene            16364..18376
                     /locus_tag="JN078_001824"
     CDS             16364..18376
                     /locus_tag="JN078_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000561880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAY9041056.1"
                     /translation="MIARWFWREWRSPSLLIVWLALSLAVACVLALGNISDRMEKGLS
                     QQSREFMAGDRALRSSREVPQAWLEEAQKRGLKVGKQLTFATMTFAGDTPQLANVKAV
                     DDIYPMYGDLQTNPPGLKPQAGSVLLAPRLMALLNLKTGDTIDVGDATLRIAGEVIQE
                     PDSGFNPFQMAPRLMMNLADVDKTGAVQPGSRVTWRYKFGGNENQLDGYEKWLLPQLK
                     PEQRWYGLEQDEGALGRSMERSQQFLLLSALLTLLLAVAAVAVAMNHYCRSRYDLVAI
                     LKTLGAGRAQLRKLIVGQWLMVLTLSAVTGGAIGLLFENVLMVLLKPVLPAALPPASL
                     WPWLWALGTMTVISLLVGLRPYRLLLATQPLRVLRNDVVANVWPLKFYLPIVSMVVVL
                     LLAGLMGGSMLLWAVLAGAVVLALLCGVLGWMQLNVLCRMTLKSLPLRLAVSRLLRQP
                     WSTLSQLSAFSLSFMLLALLLVLRCDLLDRWQQLPPESPNYFLINIATEQVAPLKAFL
                     AEHHIVPESFYPVVRARLTAINDKPTEGNEDEALNRELNLTWQNTRPDHNPIVAGNWP
                     PKADEVSMEEGLAKRLNVALGGTVTFMGDTQEFRAKVTSLRKVDWESLRPNFYFIFPE
                     GALDGQPQSWLTSFRWENGNGMLTQLNRQFPTISLLDIGAILKQVG"
     gene            18377..18775
                     /locus_tag="JN078_001825"
     CDS             18377..18775
                     /locus_tag="JN078_001825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HAY9041057.1"
                     /translation="MLEQVSRALEVMVVLVTACGMLLLLAQVQVGMRQRHQELVVWRT
                     LGAGKKLLRTTLWCEFAMLGFVSGLVAAIGAETALAVLQAKVFDFPWEPDWRLWIVLP
                     CSGALLLSLFGGWLGARLVKGKALFRQFAG"
     gene            19204..22933
                     /locus_tag="JN078_001826"
                     /pseudo
     CDS             19204..22933
                     /locus_tag="JN078_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308587.2"
                     /note="frameshifted; internal stop; incomplete; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
BASE COUNT         5287 a         6006 c         6486 g         5154 t
ORIGIN      
        1 agctgctgat gctcgccata tagaaatatt tcgagaaaat gaggattaac agaatgctga
       61 ctgccagtac cactttgttg cgcggcagtg gattgattat cgtcgctttg ggttttcctt
      121 tattcattcg gtgctgtgcc gagtaccaac ggctaatttg cgccaacacc acgatcgcca
      181 gcagtgccgc aagcacaaac caggcaacgt tgcctttgcc ataaggcgcg ataatcaccg
      241 ccgtcagcaa gggtcccagg gaactgccaa agttgccgcc gacctgaaag atagattgcg
      301 ccaggccatg ccgcccgccg gaagccatac gggctacgcg agaagattcc ggatgaaaga
      361 ccgatgaact ggtaccgacc agcgccgccg ccagcagaac tgcgccaaca ctgcccgcca
      421 gcgcaagcag caccagacca cttaaggtaa agcacatgcc aattggcaac gaccacggca
      481 tcggatattt atcggtccag tagccgacca ctggttgcag tagcgaagag gcgagctgga
      541 aggtgagggt tatcatgcca atctgcataa atgtcagaga aaattctgac tgaagcagag
      601 gataaatcgc cagaatcagc gattggatca tgtcgttcag cagatgtgag aggctgatag
      661 cacctaaaat accaaacgat gttcgggcct tggtcgttga cgcagccgcg cccgccacag
      721 gctgggtttg ttcactcatt gccataggaa agtcactttt tcagggttgc gatgtaaaga
      781 atgatcttat ttgtgattat tacccgacta acatacctgt aagcgtcgcc tgaaggaagt
      841 ctcaacgccg aatacagaat ttctaatctg gatgcagatt tatcttcacc ggacgcagac
      901 ttgtctatta tgttgcgtca tactattttt caacacgttg aaatcaggtc agggagagaa
      961 gtatgaaatt attgcagcgg ggcgtggcgt tagcgctgtt aaccacattt acactggcga
     1021 gtgaaactgc tctggcgtat gagcaggata aaacctacaa aattacagtt ctgcatacca
     1081 atgatcatca tgggcatttt tggcgcaatg aatatggcga atatggtctg gcggcgcaaa
     1141 aaacgctggt ggatggtatc cgcaaagagg ttgcggctga aggcggtagc gtgctgctac
     1201 tttccggtgg cgacattaac actggcgtgc ccgagtctga cttacaggat gccgaacctg
     1261 attttcgcgg tatgaatctg gtgggctatg acgcgatggc gatcggtaat catgaatttg
     1321 ataatccgct caccgtatta cgccagcagg aaaagtgggc caagttcccg ttgctttccg
     1381 cgaatatcta ccagaaaagt accggcgagc gcctgtttaa accatgggcg ctgtttaagc
     1441 gtcaggatct gaaaattgcc gtcattgggc tgacaaccga tgacacagca aaaattggta
     1501 acccggaata cttcactgat gtcgaatttc gtaagcccgc cgatgaagcg aagctggtga
     1561 ttcaggagct gcaacagaca gaaaagccag acattattat cgcggcgacc catatggggc
     1621 attacgataa tggtgagcac ggctctaacg caccgggcga tgtggagatg gcacgcgcgc
     1681 tgcctgccgg atcgctggcg atgatcgtcg gtggtcactc gcaagctccg gtctgcatgg
     1741 cggcagaaaa caaaaaacag gtcgattacg tgccgggtac gccatgcaaa ccagatcaac
     1801 aaaacggcat ctggattgtg caggcgcatg agtggggcaa atacgtggga cgggctgatt
     1861 ttgagtttcg taatggcgaa atgaaaatgg ttaactacca gctgattccg gtgaacctga
     1921 agaagaaagt gacctgggaa gacgggaaaa gcgagcgcgt gctttacact cctgaaatcg
     1981 ctgaaaacca gcaaatgatc tcgctgttat cgccgttcca gaacaaaggc aaagcgcagt
     2041 tggaagtgaa aataggcgaa accaatggtc gtctggaagg cgatcgtgac aaagtgcgtt
     2101 ttgtacagac caatatgggg cggttgattc tggcagccca aatggatcgc actggtgccg
     2161 actttgcggt gatgagtgga ggaggaattc gtgattctat cgaagcaggc gatatcagct
     2221 ataaaaacgt actgaaagtg cagccattcg gcaatgtggt ggtgtatgcc gacatgaccg
     2281 gtaaagaggt gattgattac ctgaccgccg tcgcacaaat gaagccagat tcaggtgcct
     2341 acccgcaatt tgccaacgtt agctttgtga cgaaagacgg caaactcaac gacctgaaaa
     2401 tcaaaggcga accggtcgat ccggcgaaaa cttaccgtat ggcgacatta aacttcaatg
     2461 ccaccggcgg tgatggctat ccgcgccttg ataacaaacc gggctatgtg aataccggct
     2521 ttattgatgc cgaagtgctg aaagcgtata tccagaaaag ctcgccgctg gatgtgagtg
     2581 tttatgaacc gaaaggtgag gtgagctggc agtaatccga aagtgccgga tatttgcatc
     2641 cggcacaatg cttaatcgcg gcgggcgata tcagcaaatt tggcatcgag gatcttcgcc
     2701 agatcgcctg ccgccagttc gatatccagt ccgcgcttgc cgccagaaac ataaatagtg
     2761 gcaaattctt gtgcgggggc gtcgataatc gtcggcagac gttttttctg ccccagtggg
     2821 ctaatccccc caaccaggta tcccgtcgaa cgctgcgcgg ccatcggatc ggccatctca
     2881 actttcttgg cacccagcgc ttttgctact tttttaagat ccagttgacc tgcgaccggc
     2941 gtaacggcca ctgccagatg tttcatatca ccgttcactg ccaccagtag cgttttgtag
     3001 acttgatccg gattcaaacc taattttttg acgacttcat cgccaaaatt ggtttcagcc
     3061 ggatcgtgct cgtaggtatg gatttgaaac gaaatcttgt ttttttcgag taatttaact
     3121 gcgggtgtca tggtaatttt cctgccttaa acaaaaaaac gaagcaagca tacgcctgat
     3181 ggcggtccaa aaaaaagagt catcttgcct aagagtattg gcaggatggt gagattgagc
     3241 gacaatcgag ttacaccgtc gcttaaagtg acggcataat aataaaaaaa tgaaattcct
     3301 ctttgacggg ccaatagcga tattggccat ttttttagcg caacatttgc ggcaaattcc
     3361 cttctccata caggtgtagt gcaccgaccg cgaccacata tcgccccggc ggcatggcgc
     3421 gtaatttatc ccgccaggcg agatttcgct gatgcatcag cacatcgtac agcgactgac
     3481 tgaacgtatt gggcagcgtt atatcattat tttgcggagg tgcattcagc caccagctca
     3541 tcatttgttg cagcaaccgt gcgttggtat gccagtgggt cagcgtatcg tccagcagcg
     3601 ccagtccttt gtcagggagc tggagcaaca tggtaatctg gttttcagcc ccttccagtt
     3661 caatcacggg tttatgttgt tgcttcgccg cctgcaataa ctggtaatcg ataccgtatt
     3721 ctgcccgcag ccccagtttt tgtgcctgcg tcgcctgaag aaccatcgcg atttgccaca
     3781 gcggttgagt agaaaagagc gacggagaaa tgcccatctc ctggctaatg tgctgcagat
     3841 tttggagttg ctcctcgtta atgcgctctt ccagcgcctc gcaagtaggc aaattagcaa
     3901 aaggcgtatc gctggtggaa acatccgcct cgacgatcag cgcatcggcg tttttgagct
     3961 ttttgagcaa acgggtgggc aggggagtca tatcgtggct acccatatga atactgccaa
     4021 tcagatgaaa atggcgattg ccgggaaggg tgatatcgat ggcaggccag gtgtaatgat
     4081 taccgcgcag cgcggcccaa agcgttttta cccggtacaa cagatccata cgacctccct
     4141 ttgtgaaata tcatgctagc gcgcggtgag ggatggcgca aatggagttg gggacttgtt
     4201 taatgtgttt gtatgattca gtatgttctt gcatcgctat tcacagggaa gcaacagtta
     4261 aaaaccatga aacaggcaac aagaaaaccg acgacacccg gagatattct tctctatgaa
     4321 tatctggaac cgctcgattt gaaaatcaat gagttagcag agttgctgca tgttcatcgt
     4381 aatagcgtca gtacactgat caataataat cgtaaactca ccactgagat ggcattccgt
     4441 ctggcgaaag tttttgatac cacagtcgat ttttggctaa acctccaggc ggcagttgat
     4501 ctttgggaag ttgaaaacaa catgcgcacc caggaagaat tgggacggat tgaaacagtg
     4561 gctgaatatt tggcacgccg tgaagagcgt gcaaaaaagg tcgcgtaagg ccaaaacatc
     4621 gcttcatctc gtaggccgga taaggcgttc acgccgcatc cggcatccga gcaccattgc
     4681 ctgatgcgac gcttacccgt cttatcaggc ctacaaacct gtgcctgaac cgtaggccgg
     4741 ataaggcgtt tacgccgcat ccggcagtca tgcgtcgatg ccaaatgcgc cgccctaaag
     4801 cagcgcatcc gcaatgacgt acttattcct tcggtttaaa ccgcagcaac cggttggcgt
     4861 tactcactac ggtaatcgac gagagcgcca ttgccgctcc ggcaactacc gggttaagca
     4921 gtgttccagt aaacggccac aaaataccag cggcgaccgg aataccaatg ctgttgtaga
     4981 taaacgcacc gagcaggttc tgcttcatat tgcgcagcgt tgcgcgggaa atcgcgagcg
     5041 catctgcaac acccatcagg ctatggcgca tcagggtaat cgccgcggtt tcaatggcaa
     5101 catcactgcc gccacccatc gcaataccga catccgcctg agccagcgct ggcgcgtcgt
     5161 taatgccgtc gcccaccatt gccacctgac gtccttcact ttgcagacgt ttgatcgctt
     5221 cggctttacc gtctggcagc accccggcga ttacctcatc aatccctgct tctttggcga
     5281 tcgcattggc ggtggttggg ttatccccgg tcaacatcac cagacgatat cccgctttat
     5341 gcaggcgttg cagcgccgcc acgctatcac tacgcaacgg atcgcgtaca gccagcaggg
     5401 ctactacttt cccgtcaatc gccagcagca caggcgttgc tccttgcgat gcctgagctg
     5461 aaatatcggc ttcaatcgct ttagtatcga cttgctggtc atttaacagc gccggattac
     5521 ccagcaataa cgcatgacct tcagcttcac cgcttacgcc cagcccgcgc aatgtgcgga
     5581 aaccgttgac ctgcggcagc tgcatatcgc ctgctttatc gaggatcgct cgtgccagcg
     5641 gatggctgga accttgctcc agcgccgccg ccagacgcaa tgcttgcgct tcatcaacat
     5701 cagcaaatgt ttttactgcg acaacctgcg gcttcccttc ggtcagcgtc ccggttttat
     5761 cgaacacgac ggtatcgagt gtactggcgc gttgcagcgc gtcggcgtcc cgcaccagca
     5821 cgccaaactc agccgcccgc ccgacgccgg aaataatcga cattggcgtc gccagcccca
     5881 gcgcacacgg acaggcaata atcagcaccg tggtggctat caccagggta tagacaatct
     5941 gcggtgccgg accaaagaaa taccagattg ctgcactgat cagcgcaatc accactacta
     6001 ccggcacaaa tacggctgag attttatccg ccagctgacc gatttctggc ttgctgctct
     6061 gggcctggcg caccatgcga ataatccttg acagcgtggt atggctgcca accgcactgg
     6121 cgcgaaatag cacgctaccg tcctgtacca ctgtcccggc atggacgctt tcgccttcgc
     6181 ctttttgctg cgggattggt tcgcccgtca gcatcgcttc atccagccat gcttcgccct
     6241 gggtaatctc gccatctacc ggcacgcgat cgccggtcgt caggcgcagt aacatccctg
     6301 gctgaacttc cgccagcggc acgctttttt caccctctgc ggtgaccact cgcgccgtcg
     6361 gtggggttaa atcgagtaat ttctccagcg ccttagaaga acgctgacgc gcgcgcgctt
     6421 ccagcatatg gccgagatta atcagaccga taatcatcgc actggcttca tagtaaagat
     6481 gccgcgcttc catcgggaac cactgcggcc acaggttgac gctcatcgaa tagagccacg
     6541 ccacacccgt acccagcgcc accagcgtat ccatcgtcgc cgcaccgttc agcaggcttt
     6601 tccacgcgct gcggtaaaaa tgcccgccgg cgaaaaccat taccgccagg gttatcaggc
     6661 cgataactaa ccacaggctg cggttgtcag cggtgaccat catgttatcg ccgatcatcc
     6721 cccagaccat taccggaata cccaccgcca gtgcgacaat cgcctgccag cggaagcgct
     6781 tcatcgtagc gacggcggtt tcctgctggc gctcgcggcg tttcgcgtca tcttcaatcg
     6841 cttccgcgcc gtagcccgct ttttccaccg cctgcactaa atcttgtggg gaggcactgc
     6901 ccatcaccag cgcagtacgc tccgccaggt ttacccgtgc ctgagtgacg cccggtacgc
     6961 tttgcagcgc attttgtacg cgggtgacac agctggcgca gctcatgccg ctcagcagca
     7021 actgctggct gtcatcgtca tcggcggtcg ctgccggaag cgcctcagaa accgctgtca
     7081 gtgcttccga cgggattgat gactccgcca gcggtttagc ctttgggtgg cttacagatg
     7141 cgtcataacc cgcttgtttg atggtttcga tcagctgttc tgcactggca gtcccggtaa
     7201 cgtgcgcttc agtgatagac acatccgctt gttccacatc cgggcgctgt tcgagacttt
     7261 ctttcacgcg tttaacgcag tgaccgcagg acaggccgtc cagggtcagg tcgatagttt
     7321 gtgacataaa acactccttt aagacagttt tgactggctg tgataaaggt taaaccttcc
     7381 agcaagggga aggtcaagaa attaataaac caggcgggta aaagtccgta aagattaaaa
     7441 aatcggctcg atttgcatca ggattagaca tttatttctt tgttttcctg tagttaagtt
     7501 gctggtgcta agttaaatca ggatgcctga aaatcggcac cggggtgagg aattacctcc
     7561 cgcatctata aaaaggagtt aacaaaagat gttagatgca aacaaattac agcaggcagt
     7621 ggatcaggct tacacccaat ttcactcact taacggcgga caaaatgccg attacattcc
     7681 ctttctggcg aatgtaccag gtcaactggc ggtagtggct atcgtgacct gcgatggcaa
     7741 cgtctatagt gcgggtgaca gtgattaccg ctttgcactg gaatccatct cgaaagtctg
     7801 tacgttagcc cttgcgttag aagatgtcgg cccgcaggcg gtacaggaca aaattggcgc
     7861 tgacccgacc ggattgccct ttaactcagt tatcgcctta gagttgcatg gcggcaaacc
     7921 gctttcgcca ctggtaaatg ctggcgctat tgccaccacc agcctgatta acgctgaaaa
     7981 tattgaacaa cgctggcagc gaattttaca tatccaacag caactggctg gtgagcaggt
     8041 agcgctctct gacgaagtca accagtcgga acaaacaacc aacttccata accgggccat
     8101 agcctggctg ctgtactccg ccggatatct ctattgtgat gcaatggaag cctgtgacgt
     8161 gtacacccgt cagtgctcca cgctcatcaa tactgttgaa ctggcaacgc ttggcgcgac
     8221 gctggcggcg ggtggtctga atccgctgac gcataaacgc gttcttcagg ccgacaacgt
     8281 gccgtacatt ctggccgaaa tgatgatgga agggctgtat ggtcgctccg gtgactgggc
     8341 gtatcgcgtt ggtttaccgg gcaaaagcgg tgtaggtggc ggtattctgg cggtcgtccc
     8401 tggcgtgatg ggaattgccg cgttctcacc accgctggac gaagaaggta acagtgttcg
     8461 cggtcaaaaa atggtggcat cggtcgctaa gcaactcggc tataacgtgt ttaagggctg
     8521 atcatgatga acacggaagg taataacggt aacaaacccc tcggtctatg gaatgtcgtt
     8581 tccatcggta ttggggcaat ggtgggggcg gggatcttcg cgctgctggg gcaggctgcg
     8641 ttgctaatgg aagcctcgac ctgggtcgcc tttgcttttg gcggtattgt ggcgatgttt
     8701 tccggttatg cctatgcgcg tctgggggcg agctatccca gcaatggcgg cattatcgac
     8761 ttctttcgtc gcggattagg caacggcgtc ttttcgctgg cgctctcgtt actgtacctg
     8821 ttgacgctgg cggtgagcat cgccatggtc gcccatgctt ttggcgctta tgccgtgcag
     8881 tttttgcatg aaggcagcca ggaggagcac cttattttgc tctacgcgtt ggggagcatt
     8941 gcggtgatga cgcttttcaa ctccttaagc aaccatgcgg tagggcggct ggaagtgatc
     9001 ctcgtcggca ttaaaatgat gatcctgtta ttgctgatta ttgccggtgt ctggtcgctg
     9061 caaccagcgc atatttccgt ctctgcgccc cccagctccg gtgcgttctt ctcctgtatt
     9121 gggataactt tccttgccta tgcgggcttt ggcatgatgg cgaacgcggc ggataaagtg
     9181 aaagatccgc aggtcattat gccacgggcg tttctggtgg cgattggcgt taccacgttg
     9241 ctttatatct cgctggcact ggttttgctt agcgatgtat cggcattaga gttagaaaaa
     9301 tatgccgata ccgccgtagc gcaggctgct tctccgctgc tcggacatgt gggttatgtg
     9361 atcgtcgtca tcggcgcttt actggcgacg gcttcagcca ttaacgcgaa cctgttcgcc
     9421 gtgtttaaca tcatggacaa catgggcagc gaacgcgaac tgccgaagct aatgaataaa
     9481 tccctgtggc ggcagagtac ctggggcaac atcattgtcg tggtgttgat tatgctgatg
     9541 acggcggcac tgaatttagg ctcactcgcc agcgttgcca gcgccacctt tttgatttgc
     9601 tacctggcgg tgtttgtggt ggcgatccgc ctgcgtcatg atattcacgc ctcgttgccg
     9661 attcttatcg ttggtacgtt ggtgatgttg ttggtgatcg ttggctttat ctacagtctg
     9721 tggtcccagg gtagccgtgc gttgatatgg attattggct cactcttact cagccttatt
     9781 gtggcaatgg tcatgaagcg caataaaacc gtataacatc tctctgtgcg cagtacttcc
     9841 tgtattattg tggtggcggt cgatattcgc actggcaaaa aaacgtgctt gaatatctgt
     9901 tgaaaccctt taacaaagca caggaggcgt tgcgcgaacg atgaacatca gcgatgtagc
     9961 aaaaattacc ggcctgacta gcaaagccat tcgcttctat gaagagaagg ggctggtgac
    10021 gccgccgatg cgcagcgaaa acggttatcg cacctacacg cagcagcatc tcaacgaact
    10081 gaccttactg cgccaggcac ggcaggtggg ctttaacctg gaagagagcg gcgagctggt
    10141 gaatctgttt aacgacccgc agcggcacag cgccgacgtc aaacggcgca cgctggagaa
    10201 ggtggcggag atcgaacgac acattgagga gctgcaatcc atgcgcgacc agctgctggc
    10261 actggcgaat gcctgccctg gcgatgacag cgccgactgc ccgattatcg aaaatctctc
    10321 cggctgctgt catcatcggg cagggtgatt aagacgagac ggctcggata tgtagggtta
    10381 tcccttctat cgcaatgact tcaacatgcg tacctgcacc gagatcctcg ctggcgctga
    10441 caggccatga actgtcaccg acgcgcatat gaccgcgccc gttgaccagc ggagattcca
    10501 gcacaaaacg tcggccaatc agctgctgcc cgcgctggtt taaatgacta tcgctgtgct
    10561 tttgttcgcg cacccgccgc gacaaccatt tccaccacag ccaggcggcg agcagcgtca
    10621 ggatggcaaa cattacccct tgccactccc aacccagcgg caccagccag accaccaggc
    10681 cggtaatcac cgctgccacg ccgctccaca acaaataacc atttccgccc agcatctcgg
    10741 ctgccagcag caaaccgccg agactgagcc agaaaatatg tggatgaacg accattaact
    10801 ccatcatggc tgagtccgtt tgttggcgct gtctttcacc agttcggcaa tcccggcaat
    10861 cgaccccatc aggctgctgg cctctaatgg catcatcact actttgctgt tactggagga
    10921 accgatctgc tgtaacgctt cggtgtattt ctgcgctacg aagtagttca ccgcctgaat
    10981 atcaccggag gcgatagctt cagacaccat tttggtggcg cgggcttctg cttcggcgga
    11041 acgttcacgc gcttcagcct gtaaaaacgc cgactgacgt tcgccttccg ctttcaggat
    11101 ttgcgactgt ttttcacctt cggctttgag gatttccgcc tgacggatcc cttccgcttc
    11161 aagaatgtaa gcgcgtttgg tacgttccgc tttcatctgc gcgttcattg aagagataag
    11221 ctctgccggt gggcgcacgt cgcgaatttc aatacgggtg actttaatcc cccacgggtt
    11281 ggtggcttca tcgacaatac gcagcaggcg tgagttgatg ctgtcgcgct gagagagcat
    11341 ttcgtcaagt tccattgaac ccaacacggt acggatgtta gtcatggtca ggttgatgat
    11401 cgccagctcc agattgctga cttcataggc agcgcgtggc gcgtcaatca cctgaataaa
    11461 acagactgcg tcgatggtaa cgttggcgtt atctttcgag ataacttcct gggaagggat
    11521 atcgagcact tgctccatca tattgatctt gcgaccaatg cgatccataa acggcaccac
    11581 cagactgagc cccggctgta acgttttggt atagcgacca aaacgttcta ccgtccattg
    11641 atagccctgc ggcacgattt tgacgcccgc gccgacaatg accagcgcga caaaaatgag
    11701 aatcgggata aagataagca tcggaaaaac ctcctgttgt accgtccata atcagcaaaa
    11761 ttgctgcttg attaaacaaa ttatacctga ttactgaaag agagttcccc cttattcctg
    11821 cgaaggataa actgttttta gtaaaaatca gaaaaaggga acagcgatgc aggaaaatag
    11881 tcctttgctt cagctacaaa acgtaggata tctggcgggt gatgcgaaga ttcttaataa
    11941 catcaatttt tcgctgcgtg ctggcgaatt taagttaatt accggtcctt ctggttgtgg
    12001 caaaagtacg ctgctaaaaa tagttgcttc attgatcagc ccaaccagcg gaacgttact
    12061 gtttgaaggt gaggatgtca gcacactaaa gccagaaatc taccgccaac aagtctctta
    12121 ctgcgcccag acaccgacgc tgtttggcga tacggtatac gataatctga tctttccctg
    12181 gcagatccgt aaccggcagc ctgacccagc catttttctc gattttctcg aacgcttcgc
    12241 cttgccggac agcattttga cgaaaaatat cgccgagcta tctggtggtg aaaaacaacg
    12301 catctcactg attcgtaacc tgcaatttat gccgaaggtt ttattgctgg atgaaatcac
    12361 cagtgcgctg gatgaaagta ataaacataa cgttaatgag atgatccatc gttatgtgcg
    12421 cgagcaaaat attgccgtgc tgtgggtgac acacgataaa gacgaaatta atcatgcgga
    12481 taaagtgatt acactgcaac cgcatgccgg agaaatgcag gaagcacgct atgaactcgc
    12541 ataatattac taacgaatca ttggcactgg cattaatgct ggtggtggtg gcaatcttaa
    12601 ttagccataa agaaaaactg gcgctggaga aagatatttt ctggagcgtc gggcgcgcga
    12661 taattcagct gattattgtc ggctatgtgc tgaagtatat tttcagcgtg gatgatgcca
    12721 gcctgacatt attgatggtg ttatttatct gctttaatgc ggcgtggaac gcgcaaaaac
    12781 gcagtaaata tattgctaaa gcttttatct catcgtttat tgccattacg gttggggcgg
    12841 gaattaccct ggcggtgctg attctctcag ggtcgattga atttatcccg atgcaggtga
    12901 tccctatcgc cgggatgatt gccggtaacg ccatggtagc ggtggggttg tgttacaaca
    12961 atttagggca acgggtcatt agcgaacagc aacagattca ggagaaactg agtcttggcg
    13021 cgacgccgaa gcaggcttca gcgatattga ttcgcgacag tattcgcgcg gctttaattc
    13081 cgacggtcga ttcagcaaaa acggttggct tagtgagttt accaggaatg atgtccgggc
    13141 tgatatttgc cgggattgat ccggtgaagg cgattaaata tcagattatg gtgaccttta
    13201 tgctgctctc aaccgccagc ttgtcgacca ttattgcctg ctatttaacc tatcgtaagt
    13261 tttataattc gcgccaccag ttggtggtga cgcaattgaa gaagaaatga tgcgatgccg
    13321 gatgcgcagc atcgcatccg gcgttgtggt tcatgtgccg aacaacggaa tatcaataca
    13381 acaatgcata cagctggcgg cgatacttcg acgccagtgc atcacccgta cccagcgcag
    13441 cgaggatctc ctggaacgtt ttacgcgtct gaccgtctgc ggcggtgaga tctttacgca
    13501 gatgcccgaa cagcaactcc agcgcctctt cattgcgccc aacctgatgc agttgcagcg
    13561 ccagttgcgt cgccagtgcg gcatcttctg gattctccgc cacctgctgt tgcaactgtt
    13621 gaatttccgg cgtatcagcc gcctgcttca gcagttcgat ttgcgccacc agcccctggt
    13681 agcgggtgtc ctgatcctgc aacggaatgg ttttcagcac cgcttccgca tcttcagaac
    13741 ggttcagcgc aatcagcgtt tctgccagca gcaggccgat ctccccgttc tgattcgaca
    13801 actgccaggc gtctttcagc aatggcaggg catcggtgta attgccttcc tgcatcagtt
    13861 gcatcgcctg ctgcgctttc agctcttctt cgcgcggcag cactttatcc agcagggcgc
    13921 ggatcgcctc ttccggttgc ggcccctgga agccatctac cggttgcccg ttctggaaca
    13981 gatacacggt cggaatcgcg cgcagaccaa actgggcggc aatcatctgc tccgcgtcgc
    14041 agtccagctt cgccagaata aattgcccgt tgtactgcgc cgcgaggctt tccaggatcg
    14101 gggttaactg caaacagtgc tggctacgtt cagaccaaaa atagaacagc accggagtgg
    14161 tcatcgactg ttcaagaacc tgttgcaggt tagattcgtt aatgttgaca atattttcta
    14221 cggacatgga gtcgctctct gttgtcgata ttttctttga catgggggct taagcgcgcg
    14281 cttcaactca cccctgcaat attttgtcca tcacgcgccc aggcagcagg cgcttgagca
    14341 ccattactgc ccaggtcacc agcgttaccg gatagcgcat cttcggcttc tcgctaataa
    14401 aagcatggcg cactttgtcg accaccgctt ccggtcccaa cgtaaagcgg gcggcgatgc
    14461 cgggattttc gactggttta tcactttgcg tctggttgac gttgtcggtg aagcgagtac
    14521 gaatgggacc gggttcgatc aggctgactt taattccgct gtggcgtagc tccatgcgca
    14581 gcgcgtctga ccacgcctcc agcgcatatt tactggccgc gtaagcgcca cgacccggcg
    14641 tggagattaa tcccatcacc gatgatgtca tcacaatacg cccttcaccg tgcggtaaca
    14701 tcgcgggtaa caggcgcatg gtgagctggt gtgcgccgaa aaagttggcg gaaaactgct
    14761 gttccatctg cgcacggctg atggtggaaa gggggccata catgccgaat ccggcattgt
    14821 taaagatccc atacagacaa ttatcggtca gggcgatcac ctcgtctgct gcgcgatcaa
    14881 cactttctgg tgaatccaga tcgatcaaca cgccggtaaa tcccatgttg ttcatacgct
    14941 caacatcatc cggttttcgg caacctgcca gcacatgaaa accctggcgt tttaattcga
    15001 gcgcgctttc caggccaatt ccactggaac atccggtaat taagaccgat ttttgcataa
    15061 ctttacctgt caggatctcc gttgctttat gagtcatgat ttactaaagg ctgcaactgc
    15121 ttcgccatcc agtcggcaat aaacggctgg gcgtcgcggt tgggatgaat accgtcatcc
    15181 tgcatccatt gtggcttgag gtagacctct tccataaaaa agggcagcag cggaacatca
    15241 aactctttgg cgagtttggg gtaaatggcg ctaaaggctt cattataacg gcgaccatag
    15301 tttgcaggca gacgtatttg cattaacaat ggttcagcgt tggcggcttt gacatcctgc
    15361 aaaatctggc gcagcgtttg ctcggtttgc tgtggctgaa aaccacgcaa accgtcattg
    15421 ccgcccagtt caaccagcac ccagcgcggc tgatgctgtt tcagcagagc cggaaggcgc
    15481 gccagtcctt gttgcgaggt gtcgccgctg atgctggcat taactaccga cgttttactc
    15541 tgccacttat cattcaacaa ggcaggccag gccgcgctgg cagacattcg atacccggcg
    15601 ctcaggctat cacccagaat caataacgtg tccgctgcgg cggcacggaa ggttaacagg
    15661 accaggaaca ggaagggcaa atgccagcgg aaaacattgt tgaagttcat catcttaaga
    15721 agtccgtcgg tcagggggag catgaactct ccatcctcac cggagttgag ctggttgtca
    15781 aacgtggcga gaccatcgca ctggtgggcg agtcgggatc gggtaagtca accttgctgg
    15841 cgatcctcgc cgggcttgat gacggcagca gtggcgaagt gagtctggtg ggacaaccgc
    15901 tacataatat ggacgaagaa gcgcgggcaa agttgcgcgc gaagcacgtc ggctttgttt
    15961 ttcagtcatt tatgttaatt cctaccctta acgcgctgga aaacgtcgag cttccggctc
    16021 tgctgcgcgg tgagagtagc gcggaaagtc gtaacggggc gaaagcgttg ctcgaacagt
    16081 tagggctggg taaacgtctg gatcatcttc cggcacagct ttccggcggt gaacagcaac
    16141 gagtggcgct ggcacgagcc tttaatggtc gacctgatgt gctgtttgcc gacgaaccca
    16201 ccggcaacct tgaccgccag acgggcgata aaattgccga cctgctgttt tccctcaacc
    16261 gtgaacatgg caccacgttg attatggtga cccacgacct gcaactggcg gcacgctgcg
    16321 accgctgctt acggctggtg aacgggcagt tgcaggagga agcatgattg cacgttggtt
    16381 ctggcgcgaa tggcgttcgc cgtcgctatt aattgtctgg ctggcgctaa gcctggcggt
    16441 ggcctgcgtg ctggcgctgg gcaatatcag cgatcgcatg gagaagggct taagccagca
    16501 aagccgtgag tttatggcgg gcgatcgggc gttgcgcagt tcacgcgaag tgccgcaagc
    16561 gtggctggag gaagcgcaaa agcgcggcct gaaagtcggc aagcagctga ctttcgccac
    16621 aatgaccttt gcaggcgaca caccgcagct ggcgaacgtc aaagcggtgg atgatatcta
    16681 cccgatgtat ggcgatctgc aaactaatcc ccctggcctg aaaccgcagg cgggcagcgt
    16741 attgctggcc ccacgcctga tggcactgct taacctgaaa acgggcgaca ccattgacgt
    16801 gggcgatgcc accttgcgga ttgccggaga agtgattcag gaaccggatt ccggttttaa
    16861 ccccttccag atggctccgc gtctgatgat gaatctggcg gatgtcgata aaaccggagc
    16921 cgtgcagccg gggagtcggg tcacctggcg ttataaattc ggcggcaacg agaaccagct
    16981 cgacggctat gagaaatggt tgttacctca gcttaaaccc gaacaacgct ggtacggtct
    17041 ggaacaggac gaaggcgcgc tggggcgatc gatggaacgc tcgcaacagt tcctgctgct
    17101 ttcggcgctt ctgaccttgc tgctggcagt ggcagcggtg gcggtagcga tgaatcatta
    17161 ctgtcgcagt cgctacgatc tggtggcgat cctcaaaacg ctgggggcag ggcgagcgca
    17221 actgcgtaag ctaatcgtcg gtcagtggtt gatggtgctg acgctttcag ccgttaccgg
    17281 tggggccata ggcctgttgt tcgaaaacgt gttgatggtg ctgctcaagc ccgttctgcc
    17341 tgctgcacta ccgccagcca gcctctggcc gtggctgtgg gcgcttggca ccatgacggt
    17401 catctcgctg ctggtggggc tacgaccata ccgcttgttg ctggcaacgc agcctttacg
    17461 cgtattacgt aatgatgtgg tagcgaacgt ctggccgctg aagttttatc tgccgattgt
    17521 cagtatggtg gttgtgctgc tgctcgccgg attaatgggt ggcagcatgc tgctttgggc
    17581 ggtgctggcg ggcgcggtag tactggcttt gctgtgcggt gtgctgggct ggatgcagct
    17641 gaatgtactt tgccgcatga cgctgaaatc gctacctctg cgcctggcgg ttagccgcct
    17701 gttacgtcag ccgtggtcaa cgttaagcca gctttcggca ttttcgctct cctttatgct
    17761 gctggcgctg ttgctggtat tgcgttgcga tctgctcgac cgctggcagc agctaccgcc
    17821 agaaagcccg aactactttt taattaacat cgccacagaa caggtagcac cgctaaaagc
    17881 gttcctcgcg gaacatcata tagtcccgga atcattttat ccggtagtgc gggcgcggct
    17941 gacggcgatt aacgataagc cgacagaagg taatgaagat gaggcgctta atcgcgaact
    18001 caatcttacc tggcaaaata cgcggcccga tcataatccg attgtcgccg gtaactggcc
    18061 gccaaaagcc gatgaagtgt cgatggaaga ggggctggcg aaacgcttaa acgttgccct
    18121 cggtggtacc gtgactttta tgggcgatac ccaggagttc cgcgctaaag tgaccagcct
    18181 gcgcaaagtg gactgggaaa gtctgcggcc taatttctat tttattttcc cggaaggggc
    18241 attagacggg caaccgcaga gctggcttac cagtttccgc tgggagaatg gcaacggcat
    18301 gttgacgcaa ctcaaccgcc agttcccgac cattagcctg ttagatattg gcgcgatttt
    18361 aaaacaggtc ggttaggtgc tggagcaggt aagtcgggcg ctggaggtga tggtggtgct
    18421 ggtcaccgcc tgcggtatgt tgctgttgct ggcacaggtg caggtgggaa tgcgccagcg
    18481 tcatcaggag ctggtggtat ggcgcacact cggtgcgggg aaaaaactgc tgcgcacgac
    18541 attgtggtgt gagttcgcca tgcttgggtt tgtttccggc ctggtggccg caattggtgc
    18601 ggaaacggca ctggcagtgt tgcaggcgaa agtgtttgat ttcccgtggg agccagactg
    18661 gcgattgtgg attgttctgc cgtgcagcgg tgcgctgctg ctgtcgcttt tcggcggctg
    18721 gctgggtgcg cgactggtta agggtaaggc gctgttcagg cagtttgcgg ggtgatgaga
    18781 gtaaataagg ggcgttctgg ttgaatggaa cgccttgttt aaattaattc tacaatatgt
    18841 ttcattgatg atgttattga attggtgatt tcctatcttt ctattgctga tattaatctg
    18901 aattggtgga gtttaataat tttaaatata gccctacaaa aataactcag actaataaaa
    18961 tcataaatca tatgcgttga atggatatta tccatatagt gaatttgttg atgatgaatt
    19021 catctgtgct aaagatttta gtttaataaa atattgaaag tgacctgtaa taacagttat
    19081 tgttgattga gaacaaataa gtttatgtga aaaatatata aatacattag ctggtcatgt
    19141 gtgtcatttt atttttttgt tgctaacaca gggatatgaa caataactaa aagggcactt
    19201 tatatgagcg gaaaaccagc ggcgcgtcag ggagatatga ctcagtatgg cggtcccatt
    19261 gtccaggggt cggcaggtgt aagaattggc gcgccaactg gcgtggcgtg ctcggtgtgt
    19321 ccgggcggga tgacctcggg caacccggtg aacccgctgc tcggtgcaaa agtacagccc
    19381 ggcgagacgg accttgcgct gcccgacccg ctgccgttca ttctctcccg cacctacagc
    19441 agctaccgga cgaagacgcc tgcgccagtg ggaacttttt ggccccggct ggaaagcgcc
    19501 ttctgatatc cgcttacaga tacgcgatga tgcactggta ctcaacgaca acggcgggcg
    19561 gagcattcac tttgagccgc tgctgccggg gaaggctgtg tacagccgca gtgagtcaat
    19621 gtggctggtg cgtggcggta aggcagcgca gccggacggc cacacgctgg cacgactgtg
    19681 ggcgtcgctg ccgccggata tccggttaag cccgcatctt tacctggcga ccaacagcgc
    19741 acaggggccg tggtggatac tggggtgatc tgagcgggtg ccgggtgctg aggacgtact
    19801 gccagcgccg ctgccgccgt accgggtgct taccgggatg gcggaccgct tcgggcggac
    19861 gctgacgtac cggcgtgagg ccgcaggcga cctggccggg gaaatcaccg gcgtgacgga
    19921 cggtgccggg cgggagttcc gtctggtgct gaccacacag gcgcagcagg cggaagaggc
    19981 ccggcagcag gcggtcgtcg ccggagcaaa acgaccggac attcctgatt cactgccgga
    20041 gagcacagag tacggccccg acaggggtat ccgcctttcg gcggtgtggc tgatgcacga
    20101 cccggcatac ccggagagcc tgcccggtgc gccactggcg cggtacacgt atacggaagc
    20161 cggtgaactg ctggcggtat atgaccgcag caatacgcag gtgcgcgctt tcacgtatga
    20221 cgcgcagcac ccgggccgga tggtggcgca ccgttacgcg ggaaggccgg agatgcgcta
    20281 ccgctacgac gatacggggc gggtggtgga gcaactgaac ccggcagggt taagctaccg
    20341 ctatctttat gagcaggacc gcatcaccgt caccgacagc ctgaaccggc gtgaggtgct
    20401 gcatacagaa ggcggggccg ggctgaaacg ggtggtgaaa aaagaactgg cggacggcag
    20461 cgtcacgcgc agcgggtatg acgcggcagg aaggctcacg gcgcagacgg acgcggcggg
    20521 acggcggaca gagtacggtc tgaatgtggt gtccggcgat atcacggaca tcaccacacc
    20581 ggacgggcgg gagacgaaat tttactataa cgacgggaac cagctgacgg cggtggtgta
    20641 cccggacggg ctggagagca gccgggaata tgatgaaccg ggcaggctgg tatcggagac
    20701 atcgcgcagc ggggagacag tacgctaccg ctacgatgac gcgcacagtg agttaccggc
    20761 gacgacaacg gatgcgacgg gcagcacccg gcagatgacg gcggttcacc gcgaggaagg
    20821 tatcagcctt taccgccact atgacaaccg tggccggtta acctcggtga aagacgcaca
    20881 gggccgtgaa acgcagtatg agtacaacgc cgcaggcgac ctgactgccg ttatcacccc
    20941 ggacggcaac cggagcgaga cacagtacga tgcgtgggga aaggcggtca gcaccacgca
    21001 gggcgggctg acgcgcagta tggagtacga tgctgccgga cgtgtcatca gtctgactaa
    21061 cgagaacggc agtcacagcg acttcagcta cgatgcgctg gaccggctgg tacagcaggg
    21121 cggctttgac gggcggacgc aacgttatca ttatgacctg accggaaaac tcacgcagag
    21181 tgaggatgag gggcttgtca ccctctggca ctacgatgcg tcggaccgca tcacgcaccg
    21241 gacggtgaac ggcgacccgg cagagcagtg gcagtatgac ggccacggct ggctgagaga
    21301 aatcagccac ctgagcgaag gccaccgtgt cgctgtccac tacggctacg acgataaggg
    21361 ccgcctgacg ggcgaacggc agacggtgga gaacccggag acgggggaac tgctgtggca
    21421 gcatgagacg aaacacgcct acaacgaaca ggggctggca aaccgcgtca cgccggacag
    21481 cctgccgccg gtggagtggc tgacctacgg cagcggttac ctggcgggca tgaagctggg
    21541 cgggacgccg ctggtcgagt atacgcggga caggctgcac cgtgagacgg tgcgcagctt
    21601 cggcagcatg gcaggcagta atgccgcata tgaactgacc agcacataca cccccgcagg
    21661 ccagttacag agccagcacc tgaacagcct ggtgtatgac cgtgactacg ggtggaatga
    21721 caacggcgac ctggtgcgca tcagcggtcc gcgacagacg cgggaatacg gctacagcgc
    21781 cacgggcagg ctggagagcg tgcgcaccct cgcaccggac ctggacatcc gcatcccgta
    21841 tgcgaccgac ccggcgggaa accggctgcc ggacccggag ctacacccgg acagcacgct
    21901 cacggcgtgg ccggataacc gcatcgcaga ggatgcgcac tatgtttacc actatgatga
    21961 atacggcaga ctgacggaga agacggaccg catcccggcg ggtgtgatac ggacggacga
    22021 cgagcggacc caccactacc actacgacag ccagcaccgc ctggtgttcc acacgcggat
    22081 acagcatggc gagccactgg tcgagagccg ctacctctac gacccgctga gccgccggac
    22141 ggggaaacgg gtgtggcgtc gcgagcgtga cctgacgggg tggatgtcgc tgtcgcgtaa
    22201 accggaggtg acgtggtacg gatgggacgg cgaccggctg acgacggtac agaccgacac
    22261 cacgcgtatc cagacggtat accagccggg gagcttcgcg ccgctcatcc gcatcgaaac
    22321 agacaacggt gaacgggaga aagcgcagtg ccgcagcctg gcggagaagt tacagcagga
    22381 agggagcgaa gacggtcacg gtgtggtgtt cccggctgaa ctggtggggc tgctggacag
    22441 gctggagggg gaaatccggg caaactgcgt gagcagtgaa agccgccagt ggcttgcgca
    22501 gtgcgggctg acggtggagc ggctggcggc acagatagag ccggtttatt tgcctgagcg
    22561 aaaaatacat ctttatcact gtgaccaccg gggcctgccg ctggcgctta tcagtgaaga
    22621 cggcaatacg gcgtggagcg cggaatatga tgaatggggc aaccagctta atgaggagaa
    22681 cccgcatcac ctgcaccagc cgtaccggct gccggggcag cagtatgata aggagtcggg
    22741 gctgtactac aaccggaacc ggtactacga tccgttgcag gggcggtata tcactcagga
    22801 cccgataggg ctggaggggg gatggagtct gtatgcgtat ccgctgaatc cggtgaatgg
    22861 tattgatcca ttagggttaa gtcccgcaga tgtagcgcta ataagaagaa aagatcaact
    22921 aaaccatcaa aga
//
LOCUS       DADMJB010000052        22864 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.052, whole genome shotgun sequence.
ACCESSION   DADMJB010000052 DADMJB010000000
VERSION     DADMJB010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22864)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22864)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22864
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.052"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            39..968
                     /gene="aaeR"
                     /locus_tag="JN078_001827"
     CDS             39..968
                     /gene="aaeR"
                     /locus_tag="JN078_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator AaeR"
                     /protein_id="HAY9041058.1"
                     /translation="MERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDEL
                     QVKLLNRSTRSIGLTEAGRIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTM
                     AQNVLAGLTAKMLKEYPGLSVNLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGA
                     MPMVVCAAKSYLTQYGIPEKPADLSSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRF
                     VTNDPMTLVRWLTAGAGIAYVPLMWVINEINRGELEILLPRYQSDPRPVYALYTEKDK
                     LPLKVQVVINSLTDYFVEVGKLFQEMHGRGKEK"
     gene            complement(1096..2541)
                     /gene="tldD"
                     /locus_tag="JN078_001828"
     CDS             complement(1096..2541)
                     /gene="tldD"
                     /locus_tag="JN078_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HAY9041059.1"
                     /translation="MSLNLVSEQLLAANGLKHQDLFAILGQLAERRLDYGDLYFQSSY
                     HESWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRD
                     SGDGKVQTLGAVGHSPLYTSVDPLQSMSREEKLDILRRVDKVAREADKRVQEVTASLS
                     GVYELILVAATDGTLAADVRPLVRLSVSVLVEEDGKRERGASGGGGRFGYEFFLADLD
                     GEVRADAWAKEAVRMALVNLSAVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRR
                     GTSVFSGQVGELVASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQ
                     DKLNARLMGMTPTGNGRRESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYGIYAPNFG
                     GGQVDITSGKFVFSTSEAYLIENGKVTKPVRGATLIGSGIETMQQISMVGNDLKLDNG
                     VGVCGKEGQSLPVGVGQPTLKVDNLTVGGTA"
     gene            complement(2697..6497)
                     /locus_tag="JN078_001829"
     CDS             complement(2697..6497)
                     /locus_tag="JN078_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709041.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA2 domain-containing protein"
                     /protein_id="HAY9041060.1"
                     /translation="MRRLPGILLLTGAALVVIAALLVSGLRIALPHLDAWRPEILNKI
                     ESATGMPVEASQLSASWQNFGPTLEAHDIRAELKDGGEFSVKRVTLALDVWQSLLHMR
                     WQFRDLTFWQLRFRTNTPITSGGGNDSLEASHISDLFLRQFDHFDLRDSEVSFLTPSG
                     QRAELAIPQLTWLNDPRRHRAEGLVSLSSLTGQHGVMQVRMDLRDDEGLLSNGRVWLQ
                     ADDIDLKPWLGKWMQDNIALETAQFSLEGWMTIDKGDVTGGDVWLKQGGASWLGEKQT
                     HTLSVDNLTAHITRENPGWQFSIPDTRITMDGKPWPSGALTLAWIPEQDVGGKDNKRS
                     DELRIRASNLELAGLEGIRPLAAKLSPALGDVWRSTQPSGKINTLALDIPLQAADKTR
                     FQASWSDLAWKQWKLLPGAEHFSGTLSGSVENGLLTASMKQAKMPYETVFRAPLEIAD
                     GQATISWLNNDKGFHLDGRNIDVKAKAVHARGGFRYLQPANDEPWLGILAGISTDDGS
                     QAWRYFPENLMGKDLVDYLSGAIQGGEADNATLVYGGNPQLFPYKHNEGQFEVLVPLR
                     NAKFAFQPDWPALTNLDIELDFINDGLWMKTDDVNLGGVRASNLTAVIPDYSKEKLLI
                     DADIKGPGKAVGPYFDETPLKDSLGATLQELQLDGDVNARLHLDIPLNGELVTAKGEV
                     TLRNNSLFIKLLDSTLKNLSGKFSFINGDLQSEPLTASWFNQPLNVDFSTKEGAKAYQ
                     VAVNLNGNWQPAKTGVLPAAVNEALSGSVAWDGKVGIDLPYHAGATYNVELNGDLNNV
                     SSHLPSPLAKPAGEPLPVNVKVDGNLSSFELTGQAGADNHFNSRWLLGQKLTLDRAIW
                     AADSKTLPPLPEQSGVELNMPPMNGAEWLALFQKGAAESVGGAASFPQHITLRTPMLS
                     LGNQQWNNLSIVSQPTANGTLVEAQGREINATLAMRNNAPWLANIKYLYYNPSVAKTR
                     GDSTPSSPFPTTERINFRGWPDAQIRCTECWFWGQKFGRIDSDLTISGDTLTLTNGLI
                     DTGFSRLTADGEWVNNPGNERTSLKGKLRGQKIDATAEFFGVTTPIRQSSFNVDYDLH
                     WRKAPWQPDEATLNGIIHTQLGKGEITEINTGHAGQLLRLLSVDALMRKLRFDFRDTF
                     GEGFYFDSIRSTAWIKDGVMHTDDTLVDGLEADIAMKGSVNLVRRDLNMEAVVAPEIS
                     ATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYHISGPLDDPQINEVLRQPRK
                     EKAQ"
     gene            complement(6565..8034)
                     /gene="rng"
                     /locus_tag="JN078_001830"
     CDS             complement(6565..8034)
                     /gene="rng"
                     /locus_tag="JN078_001830"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HAY9041061.1"
                     /translation="MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKG
                     RVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQD
                     LMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAE
                     YCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQR
                     VLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEI
                     QRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQ
                     LRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKR
                     TRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE
                     ALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVMM"
     gene            complement(8024..8617)
                     /gene="yhdE"
                     /locus_tag="JN078_001831"
     CDS             complement(8024..8617)
                     /gene="yhdE"
                     /locus_tag="JN078_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphatase YhdE"
                     /protein_id="HAY9041062.1"
                     /translation="MTSLYLASGSPRRQELLAQLGVTFERIVTGIEEQRQPQESAQQY
                     VVRLAHKKAQAGVAQTAQDLPVLGADTIVILNGEVLEKPRDAEHAAQMLRKLSGQTHQ
                     VMTAVVLADSQHILDCLVVTDVTFRTLTDEDIAGYVASGEPLDKAGAYGIQGLGGCFV
                     RKINGSYHAVVGLPLVETYELLSNFNALREKRDKHDG"
     gene            complement(8626..9114)
                     /gene="mreD"
                     /locus_tag="JN078_001832"
     CDS             complement(8626..9114)
                     /gene="mreD"
                     /locus_tag="JN078_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001487551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HAY9041063.1"
                     /translation="MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILL
                     YWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQ
                     QALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFA
                     VQ"
     gene            complement(9114..10199)
                     /gene="mreC"
                     /locus_tag="JN078_001833"
     CDS             complement(9114..10199)
                     /gene="mreC"
                     /locus_tag="JN078_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HAY9041064.1"
                     /translation="MKPIFSRGPSLQIRLILAVLVALGIIIADSRLGTFSQIRTYMDT
                     AVSPFYFVSNAPRELLDGVSQTLASRDQLELENRALRQELLLKNSELLMLGQYKQENA
                     RLRELLGSPLRQDEQKMVTQVISTVNDPYSDQVVIDKGSVNGVYEGQPVISDKGVVGQ
                     VVAVAKLTSRVLLICDATHALPIQVLRNDIRVIAAGNGCTDDLQLEHLPANTDIRVGD
                     VLVTSGLGGRFPEGYPVAVVSSVKLDTQRAYTVIQARPTAGLQRLRYLLLLWGADRNG
                     ANPMTPEEVHRVANERLMQMMPQVLPSPDAMGPKLPEPTTGIAQPTPQQPTTGNAATA
                     PAANRSPQRATPPQSGAQPPARAPGGQ"
     gene            complement(10265..11308)
                     /locus_tag="JN078_001834"
     CDS             complement(10265..11308)
                     /locus_tag="JN078_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000913396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HAY9041065.1"
                     /translation="MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQD
                     RAGSPKSVAAVGHDAKQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNN
                     FMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATG
                     SMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERI
                     KHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALE
                     QCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALE
                     MIDMHGGDLFSEE"
     gene            complement(11613..13553)
                     /gene="csrD"
                     /locus_tag="JN078_001835"
     CDS             complement(11613..13553)
                     /gene="csrD"
                     /locus_tag="JN078_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase E specificity factor CsrD"
                     /protein_id="HAY9041066.1"
                     /translation="MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQA
                     VATAIDTHLVSNDFSTLRPQITELMMSADIVRVDLLHGDKQVYTLARNGSYRPVGSSD
                     LFRELSVPLIKYPGMSLRLVYQDPMGNYFHSLMTTAPLTGAISFIIVMLFLAVRWLQR
                     QLAGQELLETRATRILNGERGSNVLGTIYEWPPRTSSALDTLLREIQNAREQHSRLDT
                     LIRSYAAQDVKTGLNNRLFFDNQLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHS
                     QVEEQFFTLTNLLSTFMMRYPGALLARYHRSDFAALLPHRTLKEAESIAGQLIKAVDT
                     LPNNKMLDRDDMIHIGICAWRSGQDTEQVMEHAESATRNAGLQGGNSWAIYDDSLPEK
                     GRGNVRWRTLIEQMLSRGGPRLYQKPAVTREGQVHHRELMCRIFDGNEEVSSAEYMPM
                     VLQFGLSEEYDRLQISRLIPLLRYWPEENLAIQVTVESLIRPRFQRWLRDTLMQCEKS
                     QRKRIIIELAEADVGQHISRLQPVIRLVNALGVRVAVNQAGLTLVSTSWIKELNVELL
                     KLHPGLVRNIEKRTENQLLVQSLVEACSGTSTQVYATGVRSRSEWQTLIQRGVTGGQG
                     DFFASSQPLDTNVKKYSQRYSV"
     gene            13705..14679
                     /locus_tag="JN078_001836"
     CDS             13705..14679
                     /locus_tag="JN078_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HAY9041067.1"
                     /translation="MQALLLEQQDGKTLASVQTLDESRLPEGDVMVDVHWSSLNYKDA
                     LAITGKGKIIRNFPMIPGIDFAGTVRTSEDPRFHAGQEVLLTGWGVGENHWGGLAEQA
                     RVKGDWLVAMPQGLDARKAIIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVG
                     STAVALLHKLGYQVVAVSGRESTHEYLKSLGASRILPRDEFAESRPLEKQVWAGAIDT
                     VGDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDSVMTPPERRA
                     QAWQRLVADLPESFYTQAAKEISLSEAPNFAEAIINNQIQGRTLVKVN"
     gene            15657..16127
                     /gene="accB"
                     /locus_tag="JN078_001837"
                     /gene_synonym="fabE"
     CDS             15657..16127
                     /gene="accB"
                     /locus_tag="JN078_001837"
                     /gene_synonym="fabE"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HAY9041068.1"
                     /translation="MDIRKIKKLIELVEESGISELEISEGEESVRISRAAPAASFPVM
                     QQAYAAPMMQQPAQSNAAAPATVPSMEAPAAAEISGHIVRSPMVGTFYRTPSPDAKAF
                     IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE"
     gene            16138..17487
                     /gene="accC"
                     /locus_tag="JN078_001838"
     CDS             16138..17487
                     /gene="accC"
                     /locus_tag="JN078_001838"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009483995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HAY9041069.1"
                     /translation="MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLL
                     ADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIF
                     IGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKA
                     SGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADG
                     QGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFE
                     FLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHA
                     VECRINAEDPNTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYG
                     ENRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGLQEK"
     gene            complement(17579..18626)
                     /locus_tag="JN078_001839"
                     /pseudo
     CDS             complement(17579..18626)
                     /locus_tag="JN078_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000787050.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
     gene            complement(18623..19585)
                     /locus_tag="JN078_001840"
     CDS             complement(18623..19585)
                     /locus_tag="JN078_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000048618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HAY9041070.1"
                     /translation="MSKVFTIGEILVEIMASKIGQPFDQPGIWNGPYPSGAPAIFIDQ
                     VTRLGVPCGIISCVGNDGFGDINIHRLAADGVDIRGISVLPQEATGSAFVTYHNSGDR
                     DFIFNIKNAACGKLSAQHVDENILKDCTHFHIMGSSLFSFHMVDAVKKAVTIVKANGG
                     VISFDPNIRKEMLDIPEMRDALHFVLELTDIYMPSEGEVLLLSPHSTPERAIAGFLEE
                     GVKEVIVKRGNQGASYYSANEQFHVESYPVEEVDPTGAGDCFGGAWIACRQLGFDVHR
                     ALQYANACGALAVTRRGPMEGTSRLAEIEAFIQRHDMSIREAAQ"
     gene            complement(19607..20596)
                     /locus_tag="JN078_001841"
                     /pseudo
     CDS             complement(19607..20596)
                     /locus_tag="JN078_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001525780.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            complement(20597..22096)
                     /locus_tag="JN078_001842"
     CDS             complement(20597..22096)
                     /locus_tag="JN078_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020245594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HAY9041071.1"
                     /translation="MTDVILDVSHIAKTFGHVQALKDITLSLRKGRVHTLLGENGAGK
                     STLMKILAGVYPPTQGTITLRGETITINNPQHSRQLGIAIIFQELSLSNNMTVAENIY
                     ANNEPRRFGIINDKKMLADCQNLLAERGIPLDPLEMVGNMSMAHRQLVEIAKALSYAA
                     DVVIMDEPTSSLSDNEAEILFNIIEKLKQRGCAVIYISHRMDEIMRISDDISVIRDGE
                     YIATHEKKNSDIQHLIAQMVGREMKNIWPARLGEIPDENVPAKLEVKNLSHPSLFKEI
                     SFAVRPGEVLGFFGLVGAGRSDVMKALFGLVSYQGTVLIDGKEVRITNPKQAIDHGIA
                     FVTENRKEEGLVLMHDVNMNTHHVAFQYNASRMGLINHRQEEAKTLQSIARMNTKVSS
                     VHQAVGALSGGNQQKIVLSKWLEKTPRILLLDEPTRGVDVGAKFEIYNVIRQLAAAGT
                     AIILVSSELPEVMALSDRLVVMRNKTIADIYSCENLTQTQVMTAATGVR"
     gene            complement(22157..>22864)
                     /locus_tag="JN078_001843"
     CDS             complement(22157..>22864)
                     /locus_tag="JN078_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HAY9041072.1"
                     /translation="LFANQDLNKQLSDVEDFITKKVDAIIISPVDSKGVQAAIIKADK
                     AGIPVITVDVAAEGVPVVSHVATDNYAGGVEAGKLMGKLLNGKGTVAIISYPALQSVV
                     ARVDGFKKGLSDTPDIKIVAEQPSITRAEALTTAQNIMQANANLNGLFGFGDDAALAA
                     VIAAKSAHNDNIKIIGFDGMKEARDAVDSEKTFAAVIRQYPDQMGAKAIDAAVDHLNG
                     KPVEKMIPVQPGVYTGK"
BASE COUNT         5669 a         6192 c         5459 g         5544 t
ORIGIN      
        1 attatgtgat ctaaatcact tttaagtcag agtgaataat ggaacgacta aaacgcatgt
       61 cggtgtttgc caaagtagtt gaatttggct cttttaccgc cgccgccaga cagctacaga
      121 tgagcgtttc gtccatcagt cagacggtgt caaaactgga agatgagttg caggtaaagc
      181 tgttaaaccg tagcacacgc agcattggcc tgaccgaagc cggtagaatt tactaccagg
      241 gctgccgtcg tatgcttcat gaagtgcagg atgttcatga gcaactgtat gccttcaata
      301 acacccccat cgggacgcta cgcattggct gttcttcaac tatggcacaa aatgttctcg
      361 ccgggctgac agccaaaatg ctgaaagaat acccaggttt gagcgtcaat ctggttaccg
      421 gaattccagc ccccgacctg attgccgacg gtctggatgt ggtgatccgc gtcggcgcgt
      481 tgcaggattc cagcctgttt tcccgccgtc ttggcgcgat gccaatggtg gtgtgcgccg
      541 cgaaaagcta tctcacacaa tacggcatac cggaaaaacc cgccgattta agtagccatt
      601 catggcttga atacagcgtg cggcccgaca atgaatttga actgattgca ccggaaggga
      661 tctcgactcg cctgatcccg caagggagat ttgtgactaa tgatccgatg acgctggtgc
      721 gctggctaac ggcgggtgcc gggatcgcct acgtgccgct gatgtgggtg atcaacgaga
      781 tcaatcgtgg ggagctggag atcctgctgc cgcgttatca gtcagatcca cgcccggttt
      841 atgcgttata taccgaaaaa gataagctgc cgctgaaggt acaggtcgtg atcaactcgc
      901 tgacggatta ttttgttgag gtcggtaaat tgtttcagga gatgcacggg cgcgggaaag
      961 agaagtaatt catattgtac tgttacgttc tacaaacctg tgccaacggg ttcccctcac
     1021 cctaacccca gaggagcgag gggaccgttc gtgcacgtag aaagattaat tatccttctg
     1081 aaaataatga aattattacg cagtaccgcc aacagtcagg ttatcaactt tcagcgttgg
     1141 ctggcccacg ccaaccggca aactttgccc ttctttaccg cagacaccca cgccgttatc
     1201 cagtttcagg tcgttgccaa ccatcgaaat ctgctgcatg gtttcgatac cggaaccaat
     1261 caacgttgcg cctctcaccg gcttcgttac tttaccgttt tcaatcagat atgcttctga
     1321 agtggagaaa acgaatttgc cggaggtgat atccacctga ccgccaccaa agttcggtgc
     1381 atagataccg tactcaacgg attcaataat ttcctgcggg gtcgatttac ccggcagcat
     1441 ataggtgttg gtcatacgcg gcatgggcag atgggcgtag gattcacggc gaccgttgcc
     1501 agtcggcgtc atccccatca aacgcgcgtt gagtttatcc tgcatgtagc ctttcagaat
     1561 gccgttctca atcagcacgt tgtactggcc tggcgtacct tcgtcatcaa tcgccaccga
     1621 accacggcga tcgaccatcg tgccgtcatc aaccacggta cacagttctg aagccaccag
     1681 ctccccgacc tgcccactaa atactgaagt gccgcggcgg ttgaagtcgc cttccagacc
     1741 gtgacctacc gcttcatgca acagcacgcc cggccaacct gcgccaagta ctaccggcat
     1801 ggtgcccgct ggtgcagcaa cggcagaaag attgaccagc gccatacgca ctgcttcttt
     1861 tgcccatgca tccgcacgga cttcgccgtc aagatcggca aggaagaact cataaccaaa
     1921 acgaccgcca ccgccactgg caccgcgttc gcgtttgcca tcttcttcga ccagaacgct
     1981 cacggaaaga cgcaccagcg gacggacatc cgccgctagc gtgccgtcgg tggccgcaac
     2041 cagaattaat tcatagacac cactgaggct ggcagtcact tcctgtacgc gcttgtccgc
     2101 ttcgcgagca accttatcga cgcgacgcag gatatccagc ttctcttcac ggctcatgct
     2161 ttgcagcgga tctaccgagg tatacaacgg gctatgccct accgcgccca gcgtctgtac
     2221 tttgccatca ccactatcac ggacgatggt gcgcgccgct tgcgcactct gttccagcgc
     2281 cagcaggctg atttggtcag cgtaagcaaa tccggttttt tcaccgctga ttgcacgcac
     2341 gccaacgccc tgatcgatgt tgtaagaacc atctttaata atgcggtctt ctaaaaccca
     2401 ggattcgtga tagctcgact gaaaatagag atcgccataa tcaaggcgac gttcggccag
     2461 ttgaccgagg atcgcgaaca agtcctgatg tttcaggccg ttcgccgcta gcaattgttc
     2521 acttactagg ttaagactca tcgtttttgc tactcgttag ttactgcagt agaggatttt
     2581 ttacggctgc cggatgcggc gtgaacgccc tatccgacct acggttatgt tctggctcgt
     2641 tggcctttgg caacgattat catatgagat tggggcaatt acgcgccctc gtcaaatcat
     2701 tgcgcttttt ctttacgcgg ttggcgcaac acttcgttga tttgcggatc gtccagcgga
     2761 cccgaaatgt gatagcgcaa aatggagact ttgctccaca gcggccccag cactttactg
     2821 gctgcaaata ctgccgcgcc aacaatgggg ttaaccgcaa aagccgcagc cacgcccacc
     2881 gtcgcagaaa tctctggtgc gacaaccgct tccatattca ggtcgcgacg taccagattt
     2941 accgaccctt tcatggcgat atccgcctcc aggccatcca ccagcgtgtc gtcggtgtgc
     3001 ataacgccgt ctttaatcca cgcggtgctg cgaatggagt caaaatagaa cccttcgcca
     3061 aaagtgtctc tgaaatcaaa acgcagctta cgcatcaggg catcaacgct caataagcgc
     3121 agcaattgcc cggcatgtcc ggtattgatt tcggtaattt cgcctttacc cagttgagta
     3181 tgaatgatgc cattcaacgt cgcctcatct ggttgccagg gtgctttgcg ccagtgtaaa
     3241 tcgtaatcca cattaaatga cgactggcgt atgggcgtcg tgacaccaaa aaattctgcg
     3301 gtggcatcaa ttttctgccc gcgcagtttt cctttcagcg aggtacgttc attccccgga
     3361 ttattaaccc attcaccatc ggcagtaagc cgcgagaaac cagtatcaat cagtccattg
     3421 gtcagcgtta acgtatcgcc agaaatggtg agatcactgt caatacgacc gaatttttgc
     3481 ccccagaacc agcactctgt gcatcgtatt tgtgcgtccg gccagccacg gaagttaatg
     3541 cgctccgttg tcgggaaagg tgatgacggt gttgaatcac cacgagtttt cgccacgctc
     3601 gggttgtaat aaagatattt gatattcgcc agccacggcg cgttattacg catcgccagc
     3661 gtggcattga tttcacgccc ctgtgcctca accagggtgc catttgccgt cggttgcgaa
     3721 acaatactca ggttattcca ttgctgattt cccagtgaca acataggcgt acgtaacgtt
     3781 atgtgttgtg ggaaactcgc tgcaccaccg acactctccg cagcgccttt ctggaacagg
     3841 gccagccact cggcaccatt catcggcggc atattgagtt caacgccact ttgttccggc
     3901 aacggcggga gcgttttact gtctgccgcc caaatagcac gatcgagcgt cagcttttga
     3961 ccaagcaacc agcggctatt gaaatggtta tccgcaccag cctgtccggt taattcaaag
     4021 ctgctgagat tgccatcaac cttaacgttt accggcagtg gttcacccgc aggtttggct
     4081 aacggtgaag gtaagtgact gctcacatta ttcagatcgc cgttcagctc tacgttatag
     4141 gtcgcgccag catgataagg cagatcaatg cccactttac catcccacgc cacgctgcca
     4201 ctcaatgctt cgttcaccgc tgcaggcaga acgccggttt tcgccggttg ccagttaccg
     4261 ttgaggttta ccgcaacctg gtaggctttt gccccttctt tggtggaaaa atccacgttc
     4321 aacggctgat taaaccagct tgctgtcagt ggttcacttt gcagatcgcc attgataaag
     4381 ctgaatttac cgctcaaatt tttcagggtg ctgtcgagta gtttgataaa cagactgtta
     4441 ttacgcagcg tcacttcacc tttcgcggtt accagttcgc cgttcagcgg gatatcaaga
     4501 tgtaagcgag cattcacatc gccgtcgagc tggagttctt gcagggtcgc acccagagaa
     4561 tctttcagcg gtgtctcatc aaagtaaggg ccaacggctt tacccggacc tttaatgtca
     4621 gcgtcaatca gcagtttttc tttcgagtag tcagggatca ctgcggtgag attactcgcg
     4681 cgcacgccgc ccagattaac gtcatcggtt ttcatccata aaccgtcgtt aataaagtcc
     4741 agttcaatat caaggttagt taatgcaggc cagtccggct ggaaggcaaa cttcgcgtta
     4801 cgcagcggca ccagcacttc aaactgacct tcgttgtgtt tataggggaa gagttgcgga
     4861 ttgccaccat aaaccagcgt cgcgttatcc gcttcaccgc cctgaatcgc gccacttaag
     4921 taatcaacta ggtctttacc catcaagttt tccgggaaat agcgccaggc ttgtgaacca
     4981 tcatcggtac tgatgccagc cagaataccc agccagggtt catcgttagc aggttgcagg
     5041 taacgaaaac cgccgcgcgc atggacagct ttggctttaa cgtcaatatt acgcccatcc
     5101 aggtggaaac ctttgtcatt gttcagccag cttatagttg cctggccgtc ggcgatttcc
     5161 agtggcgcac ggaataccgt ttcgtaaggc atctttgcct gcttcatcga cgcggtaagc
     5221 aaaccatttt caacgctgcc ggaaagcgtc ccggagaagt gttccgcacc cggtaataat
     5281 ttccattgct tccaggccag atcgctccac gatgcctgaa aacgggtctt gtctgccgcc
     5341 tgaagcggga tatccagcgc cagagtgtta atcttgccgc tcggttgtgt ggagcgccaa
     5401 acatcaccca gtgcaggtga aagtttcgcg gccagcgggc gtatgccctc caggcctgcc
     5461 agctccagat tactggcgcg aatccggagt tcgtcactgc gtttattgtc tttgccgcca
     5521 acgtcctgtt ccggtatcca ggccagcgtc aatgctccgc tcggccaggg tttgccgtcc
     5581 atcgtgatcc gtgtatcggg aatagagaac tgccagcccg gattttcacg cgtaatatgc
     5641 gcggtcagat tatccaccga cagcgtatgc gtttgcttct cgcccaacca gctggcaccg
     5701 ccctgtttca gccagacgtc accgccggtt acatcgcctt tgtcgatcgt catccagcct
     5761 tcaagggaga actgtgccgt ttccagagca atattgtcct gcatccattt accgagccac
     5821 ggcttcaggt cgatgtcatc cgcctgtagc cagacgcgac cattgcttaa caacccctca
     5881 tcatcgcgca aatccatgcg cacctgcatc acgccgtgct gtccggtaag gctggagagg
     5941 cttaccaggc cttccgcacg gtgtcgacgt ggatcgttca gccaggtgag ttgtgggatc
     6001 gccagctcgg cgcgctgacc ggatggcgtc agaaaactga cttcactgtc gcggagatcg
     6061 aaatggtcaa attgacgaag aaacagatcg ctgatgtgac tggcttccag gctatcatta
     6121 ccaccaccgc tggtgatagg agtgttggtg cgaaagcgca gctgccagaa agtgaggtcg
     6181 cgaaactgcc agcgcatatg taacaagctc tgccagacat ccagcgccag agtaacgcgt
     6241 ttaaccgaaa attcgccgcc atcttttagt tctgcacgga tgtcgtgtgc ttcaagcgtc
     6301 gggccaaaat tctgccagct ggctgagagc tgactggctt ctaccggcat gccagtcgcg
     6361 gattctattt tgttgaggat ttccggacgc caggcgtcaa gatgcggtaa agcaatacgc
     6421 aggccgctaa ccagcagggc tgcgatcaca acgagcgcgg ctccagtaag cagtaaaatc
     6481 cccggcaatc gcctcacccg tcactccttg tctgctaaaa atgtgactca aaaacccttt
     6541 gccggatggc ggcccagcat ctgtttacat cattacgacg tcaaactgct cctggttata
     6601 gagcggttca atttgtactt taacctgttt gccaacgaaa atttccactt ccgccagcga
     6661 gtgtgactct tcgcctttca aggcttcagc tactgccgga gaagcataga ccaggaaacg
     6721 gtcggagtcg taagcatggt ggacacgaac aatctcgcgc atgatttcat agcataccgt
     6781 ttccacggtt ttcaccgttc cgcgaccgtg gcaggttggg cattcgttac acagtacgtg
     6841 ctcaatgctt tcgcgggtgc gtttacgcgt catctccacc agccccagcg ccgaaaaacc
     6901 attaacgctg gttttcaccc ggtctttgct caacgcctgc tccagcgagt gcagcacgcg
     6961 gcggcggtga tcttcattat tcatatcgat gaaatcaata atgataatcc cacccagatt
     7021 acgcaaccgt aactggcgag cgatagcctg cgtcgcttca atattggtat tgaaaatggt
     7081 gtcgtccaga ttgcgatgac cgacaaacgc tccggtattg atgtccacgg tggtcatcgc
     7141 ttcggtctgg tcgataatca gataaccacc ggatttcagt tctactttgc gttccagcgc
     7201 tcgctggatt tcgttttcga catcaaagag atcgaaaatc ggctggcgtc cggtgtaatg
     7261 ctccagcttg ctggtcatct cgggaatgta ctccgaggta aactccagca atgcttcgta
     7321 agtcaggcgt gagtcaacgc gaatgcggtc cagttcggcg tcggcgaaat cacgcagaac
     7381 acgctgcgcc agcgccagtt cgccgtacag ctgataacgg gtctgcgggc gttttttacg
     7441 ctccataact ttggtccaga cgcgtttcag ataagcggca tcggaggcca gttcagcctc
     7501 gccaacccct tccgctgcgg tacggatgat aaacccgccc tgctcgtcgc aatactctgc
     7561 gaccactttt ttcaggcgtt cacgttctga ttcgctttca atacgttggg aaaccccaac
     7621 gtgagaagcc cctggcataa acaccagata gcgagaaggc agcgtgatat cggtggtcag
     7681 gcgcgcacct ttagtgccaa gcggatcttt caccacctgc accatcagat cttgcccctg
     7741 acgaaccagt tccgagatgt cgcgcaccgt gaattgcttt tgttcttcac ccgccacaca
     7801 ttcggtgtgc ggcatgatat cggatgcatg aagaaacgcg gctttatcca gcccaatatc
     7861 tacaaaagcc gcctgcatac ccggaagtac acgacttaca cgacccttgt agatattgcc
     7921 tactattccg cgtcgcgcct cacgttcaat atgaatttcc tgcagaatac cgccatcaat
     7981 atacgccact cgcgtttccg aaggcgttac gtttactaac aattcagccg tcatgtttat
     8041 cccttttctc acgcagtgcg ttaaaattac ttaataattc atacgtttca accagcggta
     8101 agccgactac ggcgtgatag ctgccattta tcttcctgac aaaacagcca cccagcccct
     8161 gaataccgta tgcacctgct ttatctaacg gttcaccgct ggcgacatag cccgcgatgt
     8221 cttcgtctgt taacgttctg aaagtcacat cggtgaccac caggcaatcg agaatgtgct
     8281 ggctgtcggc caacaccact gccgtcatca cctgatgggt ctgacccgat aatttgcgca
     8341 acatctgcgc cgcatgctct gcgtcgcgcg gtttctccag cacttctcca ttcaggataa
     8401 cgatagtatc cgcacccagc accgggagat cctgcgccgt ttgcgcgaca cccgcctgtg
     8461 ctttcttgtg tgccagacgc acaacatact gctgcgcgct ctcctgcggc tgacgctgct
     8521 cctcaatgcc cgtaacaata cgttcaaagg tcacgccaag ttgcgcaagt aactcctgac
     8581 gacgcggaga accggaagct aaatacagag aagtcataga aacctttatt gcactgcaaa
     8641 ctgctgacgg actttacgca tcagcaagaa aatccacggc cagagcaccc cattgactac
     8701 actactccag aacacttccg gtctgaaaga gacgttaatc actaaaaact ctgcccagaa
     8761 aacaataata tccaccacca gcgaaagcaa catgacgact agcgcctgct gccataatgc
     8821 gaggttgcgg aaaagctggt atttcagcgc caccaggtaa gcaatgatgc tcatcgccaa
     8881 tacgcgtacg ccaagcgtcg agccgctgat cagatccagt atggcaccca tcacaaaacc
     8941 tgtgcccaca tttacgcgat ggggcaaggc caggatccaa tacaacaaga taagtaacac
     9001 ccagtttggc cggaaaacaa tcaggttatc cggccagggc atgatttgca gcaacagcgc
     9061 aatgaggaaa gagagccaga ttacccaacg tccctggcta cgatagctcg ccactattgc
     9121 cctcccggcg cacgcgcagg cggttgagca ccactttgcg gcggcgtagc cctttgtgga
     9181 gagcgattag cagcaggcgc agtagctgca tttcctgtcg tcggttgctg cggagtcggc
     9241 tgagcgatcc ccgttgtcgg ttcaggtaac tttggcccca tcgcgtctgg cgaaggcaat
     9301 acctgcggca tcatctgcat cagacgttca ttagcaacac gatgcacctc ttccggcgtc
     9361 atcgggttag cgccgttacg atccgcgccc cacagcagca gcagataacg caaacgttgc
     9421 agtcctgcag tcggacgcgc ctgaatcaca gtataagcgc gctgggtatc gagttttacg
     9481 gaagagacaa ccgcgaccgg atagccttcc gggaaacgac cgcccagacc ggaggtcacc
     9541 agcacatcac caacacgaat atccgtattc gctggcagat gctcaagctg caaatcatct
     9601 gtacaaccgt taccggctgc aattacgcgg atatcgttgc gcagcacctg gattggcagc
     9661 gcgtgggtcg catcacaaat cagcagcacg cgactggtca gtttagcgac ggccaccacc
     9721 tgaccaacaa cacctttgtc gctgatgacc ggctggcctt cataaacgcc attaacgcta
     9781 cctttatcga taacaacttg atcgctataa ggatcgttaa ccgtggagat aacctgagtc
     9841 accattttct gctcatcctg acgcagcggg gaacccagca gctcgcgcag acgcgcgttc
     9901 tcctgtttgt attgtccaag catcagcagt tcactgtttt tcagcaacag ttcctgacgt
     9961 aacgcccggt tttcaagttc tagttggtca cgcgaggcca gcgtctgcga tacgccatcc
    10021 agcaattcac gaggagcatt ggaaacaaag tagaaaggac tgacggcggt atccatataa
    10081 gtacggattt gactgaacgt ccccaggcgg ctgtcggcaa taataatgcc gagcgccacc
    10141 agcaccgcca gaataaggcg aatctgtagc gacgggccac ggctaaaaat tggcttcata
    10201 agttatgcgt attctcgtat cagaccaggc agggtaaaca gacatttccc ctgcctgcat
    10261 ccgattactc ttcgctgaac aggtcgccgc cgtgcatgtc gatcatttcc agcgctttgc
    10321 cgccaccgcg cgccacacag gtcagcgggt cttcagcaac aacgactgga atgccggttt
    10381 cttccattaa caaacggtca aggttacgca gcagtgcgcc accaccggtg agcaccatgc
    10441 cgcgctcgga gatgtcggaa gccagttccg gcgggcactg ttccagtgca accattaccg
    10501 cgctcacaat accggtcagc ggttcctgca gtgcttcgag gatttcgttg gagttcaggg
    10561 taaaaccgcg tggaacacct tctgccaggt tacggccacg aacttcgatt tcacggactt
    10621 catcgcccgg gtaagccgaa ccgatttcgt gcttgatacg ttctgcggtg gcttcaccga
    10681 tcagagaacc gtaattacga cgcacatagt tgatgatagc ttcgtcgaaa cgatcaccac
    10741 caatgcgcac ggaagaggag taaaccacgc cgttcaagga gataacagca acttcagtgg
    10801 taccaccacc gatatcaacc accatagaac cggtcgcttc agaaaccggc aggccagcac
    10861 caattgcggc agccatcggt tcttcaatca ggaagacttc acgggcacca gcgccctgcg
    10921 cggattcacg aattgcgcgg cgttcaacct gggtcgcgcc aaccggtaca caaaccagaa
    10981 cgcgcgggct tggacgcata aagttgttgc tgtgcacttg tttgatgaag tgctggagca
    11041 ttttttcagt cacgaagaag tcggcgataa cgccgtcttt cattgggcga atggcagcaa
    11101 tattgcccgg cgtacggccc agcatctgct tcgcgtcatg acctactgca gctacgcttt
    11161 tcggtgaacc ggcacgatcc tgacgaatgg ccaccacgga aggctcattc aatacgatgc
    11221 cttgtccttt tacataaatg agggtattcg cagtacccag gtcaatggac aagtcattgg
    11281 aaaacatgcc acgaaatttt ttcaacatac taagggataa tcctgaaagc tggggcggaa
    11341 aagaaaatcc gcttacttta ccaaccacac gcagcagcga caaggcgcaa aaatcatctg
    11401 ctacggtgaa aattagtgca gttcgtttcc tttgttacaa atctctgcct gagtccagaa
    11461 aggcttaatg catcagcagc attcctcgcc tgtttgcaac cgcgtaaggt cattcatctg
    11521 catatgtgct gcaacaatct ggcgagcaga caagcacact cccatgagac gcagcgcgcg
    11581 ttattctacg tgaaaacgga ttaaacggca ggttaaaccg agtatctttg tgaatatttt
    11641 ttcacgttag tatcaagtgg ctgtgaggac gcgaaaaaat ccccttgccc gcctgtaaca
    11701 ccgcgctgaa tcagggtctg ccactcgctt cgcgaacgca caccggtggc gtaaacctgg
    11761 gtgctggtcc cggagcaggc ttccaccagg ctttgaacca gcagctggtt ctccgttcgc
    11821 ttctcaatgt ttctgaccag ccccggatgg agcttgagta actcaacatt aagttctttg
    11881 atccaactgg tgcttaccag cgtcaaacca gcctggttga cggctacccg tacccctaaa
    11941 gcattcacta aacgaataac aggttgtaaa cgactgatat gttgacctac atcggcctct
    12001 gcaagttcaa taattatgcg ttttcgttgt gatttttcac attgcattaa cgtatcgcgc
    12061 agccaacgct gaaaacgcgg gcgaatcagc gactcaacgg taacctgaat cgccagattt
    12121 tcctctggcc agtaacgcaa tagtggaata agacggctga tttgcagacg gtcatactct
    12181 tccgataagc caaactgcaa gaccatcggc atatactccg ccgagctaac ctcttcatta
    12241 ccatcgaaga tgcggcacat gagttcgcga tgatgaacct gaccttcgcg agtaaccgcc
    12301 ggtttttgat aaaggcgcgg gccgccgcga ctgagcattt gctcgataag cgtacgccag
    12361 cgaacattac cgcgtccttt ttcaggcaac gagtcatcgt aaatagccca gctattgccg
    12421 ccctgcaatc ccgcattacg cgtggcagac tctgcatgtt ccattacctg ctcggtatcc
    12481 tgaccactac gccaggcgca gataccaatg tggatcatat cgtcgcgatc gagcatttta
    12541 ttgttcggca aggtatcgac ggctttgatt aactgaccgg cgatgctctc tgcctctttt
    12601 aacgtccggt gcggtaacag cgcagcaaaa tcactgcggt ggtaacgcgc cagcagtgcg
    12661 ccagggtagc gcatcataaa tgtcgacagc agattcgtca gagtgaagaa ctgttcttca
    12721 acctggctgt gcccccaagt atcgctcaac atattgaaat ccggcagacg aatcatcatc
    12781 acgatcccgt gggtacctac tttctcctga tcttccagta acgttgctaa ctgattatcg
    12841 aaaaagagtc ggttattgag gccggttttc acgtcctggg cggcataaga gcggatcagc
    12901 gtatcaagac ggctgtgttg ttcgcgtgcg ttctgaattt cacgaagcag cgtatccagc
    12961 gcactgctgg ttctgggcgg ccattcatag atggttccca acacattaga gccacgctca
    13021 ccgtttaaga tacgagtagc ccgggtttcc agcaattctt gcccggcaag ttgccgttgt
    13081 aaccagcgta ccgccaagaa gagcataaca atgataaagc taatcgcccc cgtgagcggc
    13141 gcggtggtca tcaacgaatg gaaatagttg cccatcggat cctgataaac cagacgcagc
    13201 gacatccccg gatactttat caacggaacg ctcagttcac gaaacagatc gctggagcca
    13261 accggacgat aactaccatt tctggccagg gtataaacct gtttatcacc atggagcagg
    13321 tctacacgaa cgatatctgc cgacatcatt aattcggtaa tttgtggcct taatgtgctg
    13381 aagtcattcg acacaaggtg ggtatcaatc gccgtcgcca ccgcctgaac gcgatgacta
    13441 aacttatact gaattgcgtt gtagaaactt agcgaacagc ccagcaaagt cacaaaaatt
    13501 gttaacccgg tgagcagcgt aacaaaggcc gaaaatttcg tcgttaatct catccttgtg
    13561 ttaactccga tagtgaggaa gcgggcatac tagcaaatca gatttatctc gcaatttatt
    13621 gcgcttcatc ggctttgctt ttccattagc gagtataatc ttcagaaatt attttccaat
    13681 ccatcatgca catgaggacc acttatgcag gcgttacttt tagaacagca ggacggcaaa
    13741 actctcgcat cagtacagac tctggacgaa agtcgcctgc cggagggcga tgtcatggtc
    13801 gatgttcact ggtcgagcct gaactataaa gatgcgctgg cgattaccgg taagggaaaa
    13861 atcatccgta attttccgat gattcctggg atcgattttg ccggaactgt acgcaccagc
    13921 gaagatccgc gttttcatgc cggtcaggag gtgttactca ctggctgggg cgttggtgaa
    13981 aaccactggg gtgggctggc ggagcaggcg cgagtgaaag gtgactggct ggttgccatg
    14041 ccgcaagggc tggacgcgcg taaagcaata attatcggta ctgccggttt taccgccatg
    14101 ctgtgtgtga tggcgctgga agatgccggt gttcgcccgc aggacgggga gattgtcgtg
    14161 acgggtgcca gtggtggcgt cggcagtacc gccgtggcgc tgctgcataa gttgggttat
    14221 caggtcgttg ccgtttccgg tcgcgaaagt acccatgaat atctgaaaag tttaggtgcc
    14281 agccgtattc tccctcgtga tgagtttgcc gaatcccgtc ctctggaaaa acaagtctgg
    14341 gctggggcaa ttgacactgt tggcgacaaa gtgctggcaa aagtgctggc gcaaatgaat
    14401 tacggcggct gcgtggcggc ctgtggtctg gcgggtggtt ttactctgcc aaccacggtc
    14461 atgccattta ttctgcgtaa tgtccgtttg caaggggtgg attcagtaat gacgccacca
    14521 gaacgccgcg cacaagcctg gcagcgactg gtcgccgatt taccggaatc attctatacc
    14581 caggcggcaa aagagatatc tctgtcagag gcaccgaact ttgccgaggc catcattaat
    14641 aaccagatcc agggtcgcac gctggtgaag gttaactaac catttagcaa ggaataataa
    14701 gagagggaac tcattttgac atcattattc aatcggttaa cgggaaaagc ggttagccgg
    14761 acagctttcg tcgaacacct tggtcaggaa gttgtacaac atcatccaaa ctggaaagtc
    14821 atgatttcga ctgaccacaa attgatgcgc attgatactc ctctaaacag ccattattga
    14881 tacgcctccg tcgcctgtta ggtttatggt gctttgcctg ggcgacacta cgcttaacct
    14941 gttactgatt tctggtacca tggggtgaat aatctgattt tatttgacta caaattaacc
    15001 actcgaacct atttaatgct gagaattgtc agtcggttga ttttgcgtgc tttagcattc
    15061 acatctatcc agacgatgca gtgaaaattg ggtaatcccc agcaaccgct gcgtaatgtc
    15121 gtctatcttg tcgcgatcct ggcatcccta cattatttgt ggtctgtgaa gattatctca
    15181 ttgcagcccc tcatcttcgc agggctggct ttacagcttt tcaccttacg ttataagaag
    15241 ttccgtcgat gatggcgcta atttcgtgaa ttgtgcggct tgttgcaaat tacacggtgt
    15301 tgaaggttat ttacatgtta gctgttgatt atcttccctg ataagaccag tatttagctg
    15361 ccaattgcta cgaaatcgtt ataatgtgcg acctcgtcct ccctgacgca gtttttgcgc
    15421 tgcggaaaag gtgacattgg cgcaacgaag gtatattttg ttttttgccg gaggatagca
    15481 gcagatcgct gcacaatgtc cgtcaagtct aacattgata ctctggggca aaatagaccg
    15541 gcgtcccggc ctgctggaat ttatcgctat gcatacagct gtcggggcat acgctttaca
    15601 gacggcggtg aaacgcctgt cacaatcaca ctaaacaaag agtacggaac ccactcatgg
    15661 atattcgtaa gattaaaaaa ctgatcgagc tggttgaaga atcaggcatc tccgaactgg
    15721 aaatttctga aggcgaagag tcagtacgca ttagccgtgc agctcctgcc gcaagtttcc
    15781 ctgtgatgca acaagcttac gctgcaccaa tgatgcagca gccagctcaa tctaacgcag
    15841 ccgctccggc gaccgttcct tccatggaag cgccagcagc agcggaaatc agtggtcaca
    15901 tcgtacgctc cccgatggtt ggtactttct accgcacccc aagcccggac gcaaaagcgt
    15961 tcatcgaagt gggtcagaaa gtcaacgtgg gcgataccct gtgcatcgtt gaagccatga
    16021 aaatgatgaa ccagatcgaa gcggacaaat ccggtaccgt gaaagcaatt ctggtcgaaa
    16081 gtggacaacc ggtagaattt gacgagccgc tggtcgtcat cgagtaacga ggcgaacatg
    16141 ctggataaaa ttgttattgc caaccgcggc gagattgcat tgcgtattct tcgtgcctgt
    16201 aaagaactgg gcatcaagac tgtcgctgtg cactccagcg cggatcgcga tctaaaacac
    16261 gtattactgg cagatgaaac ggtctgtatt ggccctgctc cgtcagtaaa aagttatctg
    16321 aacatcccgg caatcatcag cgccgctgaa atcaccggcg cagtagcaat ccatccgggt
    16381 tacggcttcc tctccgagaa cgccaacttt gccgagcagg ttgaacgctc cggctttatc
    16441 ttcattggcc cgaaagcaga aaccattcgc ctgatgggcg acaaagtatc cgcaatcgcg
    16501 gcgatgaaaa aagcgggcgt cccttgcgta ccgggttctg acggcccgct gggcgacgat
    16561 atggataaaa accgtgccat tgctaaacgc attggttatc cggtgattat caaagcctcc
    16621 ggcggcggtg gtggtcgcgg tatgcgcgta gtgcgcggcg acgctgaact ggcacaatcc
    16681 atctccatga cccgtgcgga agcgaaagct gctttcagca acgatatggt ttacatggag
    16741 aaatacctgg aaaatcctcg ccacgtcgag attcaggtac tggctgacgg tcagggcaac
    16801 gctatctatc tggcggaacg tgactgctcc atgcagcgcc gccaccagaa agtggtcgaa
    16861 gaagcaccag caccgggcat taccccggaa ctacgtcgct acatcggcga acgttgcgct
    16921 aaagcgtgtg ttgatatcgg ctatcgcggt gcaggtactt tcgagttcct gttcgaaaac
    16981 ggcgagttct atttcatcga aatgaacacc cgtattcagg tagaacaccc ggttacagaa
    17041 atgatcaccg gcgttgacct gatcaaagaa cagctgcgta tcgctgccgg tcaaccgctg
    17101 tcgatcaagc aagaagaagt tcacgttcgc ggccatgcgg tggaatgtcg tatcaacgcc
    17161 gaagatccga acaccttcct gccaagccca ggcaaaatca cccgtttcca cgcacctggc
    17221 ggttttggag tgcgttggga gtctcatatc tacgcgggct acaccgtacc gccgtactat
    17281 gactcaatga tcggtaagct gatttgctac ggtgaaaacc gtgacgtggc gattgctcgc
    17341 atgaagaatg cgctgcagga gctgatcatc gacggtatca aaaccaacgt tgatctgcag
    17401 atccgcatca tgaatgacga gaacttccag catggtggca ctaacatcca ctatctggag
    17461 aaaaaactcg gtcttcagga aaaataattt gtgacgcgcg gtgttttcat cgcgcttagc
    17521 aaagaacgta atcaacgccg ggcctgttaa cgctgcccgg cgtttttatt gccgttagct
    17581 aacggtagcc tgcaatttcc gctttcaacg cgctcatttc agcatcgcca tcaacaattc
    17641 ccagctcaaa gcagtatttc tttgtttccc ctggctcaat aaagggcaga cgcccctgcg
    17701 ctcgttcttt atcacgaccg tcaggaaaac tattactgac ctccagtccc ataacatact
    17761 cacccgcgcc taaatttttc cactggataa agttgggtag ctgcatggtg tcgaatttct
    17821 cgtaaattcc ccaccccagt tcggcgttca ccagagcaac tttactcatc ccctgactgt
    17881 cgctattcaa cgtgagatag taaacctgct cgtcaaaacc gggctgtggg gtacaaatct
    17941 ccagatgact ggttaaccct tccgccgcat gcggagttcg tggcgttacg cttttagccg
    18001 acagcaagat ttctggcctg tggcgataat aaaggccagc cgtaattaaa gtgataaaga
    18061 atttgcagcg gctggcgggt gaaaccatga ttagtcacct tgtcttcaat gcgcagcaca
    18121 ttttcgccat aacggcagcg aatggtcctt tccagcgtca gattttcgcc gaacagtcgc
    18181 gtttcccgta ctttgccatt gatgacaaat tcaatgccgt cgtcggtccg ttctgtgcga
    18241 taccccacct cttctgctgg agtcgcagcc aaacgcccgt gtaaccccag cgtttctcct
    18301 tcatcctcac aaggcgtgcc aatgtagcta agtccgcagg tagtcagtaa ccccgcgtaa
    18361 aagctacgta aaaatccgtt gccctgagac tcaaaaaaag cgggggcgac aatgccgttg
    18421 ggggtgataa aagaaagcgc cgtgtccttg tagctggccc atgcaatatc cagcgcgcga
    18481 tcttttacca ccgtaaatgc cagtcccgca ccagtacgga catcaaacgc ttctgtaccc
    18541 tttgctctgc cactacgtaa ctcatagtgt ttaattccgg caacctgcga gagatcgcca
    18601 atccacgacc aaatttcgtt tttcattgtg ctgcttcccg aatggacatg tcatggcgct
    18661 ggatgaacgc ttcgatttcc gcaaggcgag acgttccctc cattgggcca cgtctggtta
    18721 ccgccagcgc accgcaggca ttggcatatt gcagcgctcg atggacgtca aaccctagct
    18781 ggcggcaggc aatccacgcg ccaccaaagc agtctcccgc accggtcggg tcaacttctt
    18841 ccaccggata gctctcaaca tgaaactgct cattcgcgga gtagtaactg gcaccttgat
    18901 tgccgcgctt cacaatcacc tctttaacac cttcttcaag aaaacctgcg attgcacgct
    18961 ccggcgtcga atgtggcgac aagagcaaca cttcgccctc gctgggcata tagatatccg
    19021 ttaactcaag aacaaagtgg agggcgtcac gcatttctgg aatatcgagc atctctttac
    19081 gaatattagg gtcgaaagaa ataacaccac catttgcttt aacgatagtt accgcttttt
    19141 ttactgcgtc taccatatga aacgaaaaca gggaagagcc cataatatga aaatgggtac
    19201 agtccttcag aatattttca tcaacatgct gcgccgataa tttaccgcaa gcggcattct
    19261 taatattaaa aataaaatcg cgatcgccag agttatgata agtaacaaag gcactcccgg
    19321 tagcttcctg aggtaagact gaaatccccc tgatatccac accgtcagca gccagacgat
    19381 gtatattaat atcaccaaag ccatcattcc ccacacagct aatgatgccg cacggaacgc
    19441 caagacgtgt cacctggtcg ataaaaatag cgggcgcacc actgggataa gggccgttcc
    19501 agatacctgg ttgatcaaat ggctggccga ttttactcgc cataatttca accagaattt
    19561 ctccaattgt gaagacctta ctcatatgat taattccttg aaatgattag ctgcgttttc
    19621 ttttatttct tacgtcaaaa taaacggcta caagaatgac taatccttta accaccatct
    19681 ggtaaaaata gggaacattc attaagttca tgccattatt aataacgccg atagttaatg
    19741 cgccgatcac cgtccccacc acggttccat agccgccgtt caggctggtg cctcccagta
    19801 cagccgcagc aatagcatcc agttcgtagc tcaacgcgga attcggttac ccggaataga
    19861 ggcgtgaggc gaggatcatc ccgctgatac ctgccagcac ggctgtaatc ataaagactt
    19921 taattttcaa gcgggtgaca tttatccctg aataaattgc cgcttcttta ttaccaccag
    19981 tgatataaat ttttcgtcca aaggttgttt tagtaagaat gaagtggtta atcagcaata
    20041 agatgattaa tatccagatt ggaataggta tatagagaaa ttctccattc cccagtgcca
    20101 gaaaggcatc atctttaatc atgatgggca taccatcggt cactatataa gcgataccac
    20161 ggaagatccc catagtagca acggtgacaa taaacgacgg gatccccgct atagccgtca
    20221 agccaccatt tatcatcccc agagccagtg ctgcaataat ggataatggg accaataaaa
    20281 taaatggaat tccccatgaa gccccaagcg cagcaaatgt gccaatcaat gcaatggttg
    20341 aaccgaccga taaatcaata tcgccaagca aaagtacata agtcattcca taggcggtaa
    20401 ttgcaattat cgaaacctga agaataatat tagtaatgtt gttggcggta aaaaaactgt
    20461 cattaataaa actgaacaga atgattaaca ccaccattcc actgaggata ccgccatatt
    20521 gcctgaagac ttttttaaaa ttatttgcaa tgggaatttc cgaaggtttc ggactggcaa
    20581 gagttttctc tgtcatttaa cgtactcctg ttgcagcggt cattacctgt gtctgcgtta
    20641 aattttcaca tgaataaata tcggcaatcg ttttattacg cattaccacc agacgatcgc
    20701 taagtgccat gacttctggc agttcagagg acaccagaat aattgctgtc cctgccgcag
    20761 ccagttgacg tatcacgtta tagatttcaa attttgcgcc gacatccact ccgcgcgttg
    20821 gctcatcgag caataaaata cgcggagttt tctccagcca cttcgataac acgattttct
    20881 gttgattacc gccgctcagc gctcccactg cctgatgtac agaactcact ttagtgttca
    20941 ttctggcaat tgattgcagc gtcttcgcct cttcttgtcg gtgattgatg agtcccatcc
    21001 gcgaagcgtt atattgaaac gccacatggt gcgtgttcat attgacgtcg tgcatcagca
    21061 ctaacccttc ttccttgcgg ttttcggtca caaaagcaat gccatgatca atagcctgtt
    21121 taggattagt gatcctgact tccttaccat caatcaacac agtcccctga tacgaaacga
    21181 ggccaaagag cgccttcatc acatcggaac gcccggcccc caccaggcca aaaaatccga
    21241 ggacctcccc cggacgcaca gcgaaactga tctctttaaa aagcgaagga tgggaaagat
    21301 tttttacttc cagttttgca ggaacatttt catccggtat ttccccaaga cgtgctggcc
    21361 aaatattttt catttcccga ccaaccattt gggcaatcaa atgctggata tcactgtttt
    21421 tcttttcatg cgtggcgata tactcaccgt cgcggatcac cgaaatatca tctgaaatcc
    21481 gcataatttc atccatgcga tgagagatat aaataaccgc acagcctcgc tgctttaatt
    21541 tttcaataat gttaaacaga atctccgctt cattatcact tagcgaagat gtcggttcat
    21601 ccataatcac gacatccgct gcatagctta aggctttagc aatttctacc agttgcctat
    21661 gtgccatcga catattgccg accatttcta gtgggtctag tggtatgccc cgttccgcga
    21721 ggagattctg gcaatctgcg agcatttttt tatcgttaat aatgccaaaa cgtcgcggtt
    21781 cattattggc ataaatattt tccgccacgg tcatattatt actcaggctc aattcctgaa
    21841 aaataatcgc aattcctaac tggcgtgaat gctgcggatt attaatggtg atagtttcac
    21901 cacgtagtgt tatcgttccc tgggttggcg gataaacacc ggccagtatt ttcattaatg
    21961 tcgatttacc ggcaccattc tcgcctaata aagtatgcac ccgcccttta cgtaaagaga
    22021 gggtaatatc ttttaatgct tgaacatgac caaatgtctt cgcaatatgc gaaacatcaa
    22081 gaataacatc cgtcataatg acctcggtgt cacaacaaaa cgccaataac gttttgttgt
    22141 gaggtgaaga tgtttactat ttacctgtat aaacgccggg ttgtaccggg atcatttttt
    22201 ctaccggttt accattgagg tgatcaacag cggcatcaat ggctttagca cccatttgat
    22261 cgggatattg ccgaatcacg gccgcaaacg ttttttcact gtcaacggca tcacgcgctt
    22321 ctttcatgcc atcaaaacca atgattttga tgttgtcgtt atgcgcagat tttgctgcga
    22381 taaccgctgc cagcgccgca tcatcaccaa agccaaacag accattcagg ttggcatttg
    22441 cctgcataat gttttgcgca gtcgttaacg cttcagcccg cgtaatacta ggctgttcag
    22501 caacaatttt aatatccggt gtatcgctta accctttctt aaaaccatca acgcgcgcaa
    22561 ccaccgattg tagtgccgga taagaaataa tggctacagt acctttacca ttcaaaagtt
    22621 tgcccattaa cttgcctgct tcaacgcctc ccgcatagtt atcggtcgca acatgcgata
    22681 cgaccggaac gccttccgca gcgacgtcga cggtgataac gggaataccg gccttatcgg
    22741 ctttaattat cgccgcctgg acgcctttcg aatcgaccgg agagataata atggcatcca
    22801 cttttttagt aataaaatcc tcaacatcag aaagttgttt gtttaaatcc tgattggcaa
    22861 atag
//
LOCUS       DADMJB010000053        22777 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.053, whole genome shotgun sequence.
ACCESSION   DADMJB010000053 DADMJB010000000
VERSION     DADMJB010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22777)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22777)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22777
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.053"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..454)
                     /locus_tag="JN078_001844"
     CDS             complement(<1..454)
                     /locus_tag="JN078_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000755097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY9041073.1"
                     /translation="MKKVFAKSLLVAAMFSVAGSALAVQKDITVTANVDAALDMTQTD
                     NTALPKAVEMQYLPGQGLQSYQLMTKIWSNDVTKDVKMQLVSPAQLVQSLDASKIVPL
                     TVTWGGEEIKADAATTFTATKIFASDALTNGSLAKNLMFAQTTKGVLET"
     gene            complement(484..1200)
                     /locus_tag="JN078_001845"
                     /pseudo
     CDS             complement(484..1200)
                     /locus_tag="JN078_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000225871.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
     gene            1496..2272
                     /gene="exuR"
                     /locus_tag="JN078_001846"
     CDS             1496..2272
                     /gene="exuR"
                     /locus_tag="JN078_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ExuR"
                     /protein_id="HAY9041074.1"
                     /translation="MEITEPRRLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNV
                     SRTVVREAIIMLEVEGYVEVRKGSGIHVVSNQPRHQQAADNNMEFANYGPFELLQARQ
                     LIESNIAEFAATQVTKQDIMKLMAIQEQARGEQCFRDSEWDLQFHIQVALATQNSALA
                     AIVEKMWTQRSHNPYWKKLHEHIDSRTVDNWCDDHDQILKALIRKDPHAAKLAMWQHL
                     ENTKIMLFNETSDDFEFNADRYLFAENPVVHLDTATSGSK"
     gene            2617..3279
                     /locus_tag="JN078_001847"
     CDS             2617..3279
                     /locus_tag="JN078_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HAY9041075.1"
                     /translation="MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLP
                     AAFLPGDSLLVLVGVLIAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNW
                     LSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMS
                     GLLWVLILTTLGYMLGKTPVFLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGN
                     RG"
     gene            3283..3666
                     /gene="mzrA"
                     /locus_tag="JN078_001848"
     CDS             3283..3666
                     /gene="mzrA"
                     /locus_tag="JN078_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EnvZ/OmpR regulon moderator MzrA"
                     /protein_id="HAY9041076.1"
                     /translation="MQIPRMSLRQLAWSGTVLLLVGTLLLAWSAVRQQESTLAIRAVH
                     QGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYI
                     IAQQDNNSQAMQWLTRLRDNSHRFG"
     gene            3813..4181
                     /locus_tag="JN078_001849"
     CDS             3813..4181
                     /locus_tag="JN078_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417568.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 domain-containing protein"
                     /protein_id="HAY9041077.1"
                     /translation="MKYRIALAVSLFALSAGSYATTLCQEKEQNILKEISYAEKHQNQ
                     NRIDGLNKALSEVRANCSDSQLRADHHKKIAKQKDEVAERQQDLAEAKQKGDADKIAK
                     RERKLAEAQEELKKLEARDY"
     gene            4219..4524
                     /locus_tag="JN078_001850"
     CDS             4219..4524
                     /locus_tag="JN078_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF883 domain-containing protein"
                     /protein_id="HAY9041078.1"
                     /translation="MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAE
                     QALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR"
     gene            4527..4931
                     /locus_tag="JN078_001851"
     CDS             4527..4931
                     /locus_tag="JN078_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041079.1"
                     /translation="MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEK
                     ANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIW
                     TLRKSRKSTLLRHTRHELANDRQLLEEESREQ"
     gene            4921..5220
                     /locus_tag="JN078_001852"
     CDS             4921..5220
                     /locus_tag="JN078_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041080.1"
                     /translation="MSSKVERERRKAQLLSQIQQQRLDLSASRREWLEATGAYDRRWN
                     MLLSLRSWALVGSSVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG"
     gene            5316..5798
                     /locus_tag="JN078_001853"
     CDS             5316..5798
                     /locus_tag="JN078_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HAY9041081.1"
                     /translation="MILSIDSNDANTAPLHKKTISSLSGAVESMMKKLEDVGVLVARI
                     LMPILFITAGWGKITAYSGTQQYMEAMGVPGFMLPLVILLEFGGGLAILFGFLTRTTA
                     LFTAGFTLLTAFLFHSKFAEGVNSLMFMKNLTISGGFLLLAITGPGAYSIDRLLNKKW
                     "
     gene            5868..6771
                     /locus_tag="JN078_001854"
                     /pseudo
     CDS             5868..6771
                     /locus_tag="JN078_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708909.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
     gene            7064..7429
                     /locus_tag="JN078_001855"
     CDS             7064..7429
                     /locus_tag="JN078_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HAY9041082.1"
                     /translation="MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKML
                     GWQRAGGEGILTTIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFN
                     CQAGTPGENRFGPDPKLEP"
     gene            7671..8027
                     /locus_tag="JN078_001856"
     CDS             7671..8027
                     /locus_tag="JN078_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HAY9041083.1"
                     /translation="MQWYLAVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLIL
                     GLEFPFLSLIYLAATIIPVIALCVRRLHDTDRSGVWALLYLVPIIGWLVLFVFACLEG
                     NSGSNRYGNDPKFGSN"
     gene            complement(8078..8974)
                     /locus_tag="JN078_001857"
     CDS             complement(8078..8974)
                     /locus_tag="JN078_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY9041084.1"
                     /translation="MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQK
                     LEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIV
                     TEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSS
                     EINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLD
                     KQPRLTVSTIEDKRQALLAGLGVATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWR
                     RDSMGEAKSWCLREIPKLFSGK"
     gene            9079..9780
                     /locus_tag="JN078_001858"
     CDS             9079..9780
                     /locus_tag="JN078_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HAY9041085.1"
                     /translation="MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLN
                     QEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYS
                     EHNLSKDKPLTRMQLWLDACPQRENPLIQKLALNMGKQQLIASPEGTMGSLQLRQQVW
                     LHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITL
                     VADSPLRALLIDLPV"
     gene            9803..9967
                     /locus_tag="JN078_001859"
     CDS             9803..9967
                     /locus_tag="JN078_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312016.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041086.1"
                     /translation="MSKKSAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAE
                     TRLAEDEATA"
     gene            complement(10101..11411)
                     /locus_tag="JN078_001860"
     CDS             complement(10101..11411)
                     /locus_tag="JN078_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine dehydratase subunit alpha family protein"
                     /protein_id="HAY9041087.1"
                     /translation="MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAEL
                     EGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQ
                     AIADAKALLAAGKVSVKIQEPCNEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHNS
                     VVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEG
                     LSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQ
                     GITATMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAA
                     GMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDT
                     AVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR"
     gene            complement(11439..12771)
                     /locus_tag="JN078_001861"
                     /pseudo
     CDS             complement(11439..12771)
                     /locus_tag="JN078_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026203.3"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
     gene            complement(13045..14409)
                     /gene="tdcG"
                     /locus_tag="JN078_001862"
     CDS             complement(13045..14409)
                     /gene="tdcG"
                     /locus_tag="JN078_001862"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HAY9041088.1"
                     /translation="MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSH
                     IVVDLYGALSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGA
                     HIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEALLSKTYYSVGGGFIVEEEHFGLS
                     HDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHD
                     GIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENA
                     AGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISG
                     AEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPC
                     IERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIK
                     VVCG"
     gene            complement(14481..14870)
                     /locus_tag="JN078_001863"
     CDS             complement(14481..14870)
                     /locus_tag="JN078_001863"
                     /EC_number="3.5.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312020.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enamine/imine deaminase"
                     /protein_id="HAY9041089.1"
                     /translation="MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPA
                     DVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATY
                     PTRSCVQVARLPKDVKLEIEAIAVRSA"
     gene            complement(14884..17178)
                     /gene="tdcE"
                     /locus_tag="JN078_001864"
     CDS             complement(14884..17178)
                     /gene="tdcE"
                     /locus_tag="JN078_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-ketobutyrate formate-lyase/pyruvate
                     formate-lyase"
                     /protein_id="HAY9041090.1"
                     /translation="MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGD
                     ESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIV
                     GLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPD
                     MLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDL
                     EATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNG
                     GAMSLGRTASFLDIYIERDFEAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSG
                     DPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYA
                     AQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYA
                     INGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDK
                     YSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDG
                     EYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNT
                     PDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKE
                     DPVRKTNLVGLLDGYFHHEADVEGGQHLNVNIMNREMLLDAIEHPEKYPNLTIRVSGY
                     AVRFNALTREQQQDVISRTFTQAL"
     gene            complement(17212..18420)
                     /gene="tdcD"
                     /locus_tag="JN078_001865"
     CDS             complement(17212..18420)
                     /gene="tdcD"
                     /locus_tag="JN078_001865"
                     /EC_number="2.7.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417585.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propionate kinase"
                     /protein_id="HAY9041091.1"
                     /translation="MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAF
                     LSVNGGEPAPLAHHSYEGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITD
                     EVIDNIRRVSPLAPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLP
                     WKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQS
                     VDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLS
                     SDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLI
                     RRLVMEHLAVLGVEIDTEMNNRSNSCGERIVSSENARVICAVIPTNEEKMIALDAIHL
                     GKVNAPAEFA"
     gene            complement(18446..19777)
                     /gene="tdcC"
                     /locus_tag="JN078_001866"
     CDS             complement(18446..19777)
                     /gene="tdcC"
                     /locus_tag="JN078_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine transporter TdcC"
                     /protein_id="HAY9041092.1"
                     /translation="MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRA
                     GFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITF
                     LYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLM
                     VKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIM
                     VFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLF
                     TLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGH
                     YLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAM
                     GAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF"
     gene            complement(19799..20788)
                     /gene="tdcB"
                     /locus_tag="JN078_001867"
     CDS             complement(19799..20788)
                     /gene="tdcB"
                     /locus_tag="JN078_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional threonine ammonia-lyase/L-serine
                     ammonia-lyase TdcB"
                     /protein_id="HAY9041093.1"
                     /translation="MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEI
                     FLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGK
                     VVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIA
                     GQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAA
                     SFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQR
                     NKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA"
     gene            complement(20887..21825)
                     /gene="tdcA"
                     /locus_tag="JN078_001868"
     CDS             complement(20887..21825)
                     /gene="tdcA"
                     /locus_tag="JN078_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator TdcA"
                     /protein_id="HAY9041094.1"
                     /translation="MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIIND
                     IEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFG
                     FPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKL
                     QDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNG
                     ISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAV
                     WSKNYRIKKAASVLVELAKEYSSYNGCRRRLLIEVG"
     gene            22014..22358
                     /gene="tdcR"
                     /locus_tag="JN078_001869"
     CDS             22014..22358
                     /gene="tdcR"
                     /locus_tag="JN078_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional activator TdcR"
                     /protein_id="HAY9041095.1"
                     /translation="MTGITIFYGDNIIRYVVNTKKGLRPYFKQLPDNYQAKFELNLMS
                     KFSNFIINKPFSAINTAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSS
                     DRTSFCECNRFP"
BASE COUNT         5970 a         5762 c         5310 g         5735 t
ORIGIN      
        1 ctgtctccag aacacctttg gtggtttgag caaacatcag gtttttagcc agagaaccgt
       61 tagttaacgc atcggaagca aagattttgg ttgcggtaaa agtggttgcc gcatcagctt
      121 taatttcttc accgccccag gttactgtca gcggaacaat cttgctagca tccaggcttt
      181 gaaccagttg cgccggggaa actaactgca tttttacatc tttggtaacg tcgttagacc
      241 agattttggt catcaactgg taagattgca gaccctgccc cggcagatat tgcatttcta
      301 ctgctttcgg caacgcggtg ttatcggtct gtgtcatatc cagagcggca tcaacgttgg
      361 ccgttacagt aatatccttt tgtactgcca atgcggagcc tgcaacagaa aacatcgctg
      421 cgaccagaag agattttgca aatacctttt tcattactat tccttcgttt attacaatga
      481 taattaatgg accgccagtt caaactcgcc attatctttg gtgatccagt tattatattt
      541 gacaacgatt ttgtcgtagc cagatatgct ttcaagattt ctttcctgac cagggaagat
      601 gtttttattt acggtctgta tcttacaatt ttctttgcta ttatttttac aataagcgat
      661 cgttaaaatc tttaagcgtt gattccctgc attaactaat ttttgggcag catttacttc
      721 taacttagca ataggttgct gaggtggaac actaacaaca atcccccaaa ttaagctaac
      781 agttaactgc atagagaaat cttttttatc tgtggcaacg tcatcaatac tgggaaccgc
      841 ttcaaattta acgcgttaat ttttttcttt ttgctctggt tccattgcaa caaagcgcac
      901 agttttgcta ctaccggctg gtaaagcgaa tttaggtggc ataacaacca gatgatttgc
      961 atcaccggat ttaatctcaa cttcattttc ctgaggcgtc gatggattat cgatacggaa
     1021 tactgtcgcc ttgatgtact gaacttcatt acttttagat attacgcgaa cgttgccttc
     1081 atcctgacta ttaatggaaa cagccatagg ataaacagtc atatttgact gtgccaaaaa
     1141 aggagcgaac acgaataaaa gcggcgcaag ccgtgataag agattaattt tcgccaccat
     1201 ataaatttga tcttacaata ttgtttccaa aaagttggtg tattagagat gtagatttat
     1261 tgtaagtcaa tataaaaaag catttttagt taatattaaa tttaaaggct gggaattaac
     1321 ttgctgaaat ttagtagctt tcacaatgac gatacttatt ttttaggaat ttataaatat
     1381 tcacaatatt aattcaatac attaattcaa tcaccaaatt tatatatgac caatggcata
     1441 cccatgaata aagtggtatg ataacttcgt ccgcattcca ctccgggaga cgcatatgga
     1501 aatcactgaa ccacgccgtt tgtatcaaca acttgccgct gacctgaaag agcgcattga
     1561 acagggcgtc tatctggtgg gtgataaact gcctgccgaa cgctttattg ccgatgaaaa
     1621 gaacgtcagc cgaacggtag ttcgtgaagc catcatcatg ctggaagttg aaggctatgt
     1681 ggaggtgcgt aaaggttcag gtattcatgt ggtttccaac cagccgcgcc atcagcaggc
     1741 ggctgacaat aatatggaat tcgccaatta cggtccgttt gagttgcttc aggctcgcca
     1801 gctcatcgaa agtaatattg ccgagttcgc ggcaactcag gtaacgaaac aagacatcat
     1861 gaaactgatg gccattcagg aacaggcgcg cggcgaacaa tgcttccgtg attccgagtg
     1921 ggatttacag ttccacattc aggtagccct ggcgacgcag aactccgccc tggcggccat
     1981 cgttgaaaaa atgtggaccc agcgtagcca taacccgtac tggaaaaaac tacacgaaca
     2041 cattgattcc cgtaccgttg ataactggtg tgatgaccac gatcaaattc tcaaggcgtt
     2101 aattcgcaaa gatccccatg ctgctaagct ggcaatgtgg cagcatctgg aaaacaccaa
     2161 aatcatgtta tttaacgaaa ccagcgacga tttcgagttc aatgccgacc gctatctatt
     2221 cgccgaaaac ccggtagtgc atctcgatac ggccaccagt ggcagtaaat gaaactcctg
     2281 tccgacaggc gctgcgacgc gcctgttcgc ttcgtcggta agcgaaaagt ataaagtgtc
     2341 agcctgtgta aatcctctcg ccaccctccc ctgcattcag caaaatcaga ctccacggac
     2401 atgtaatttt gataacgaac aacgttgacc tttgttacaa ttagattcaa tttgaattta
     2461 tgtttttgaa tgctttctta tctcacgatt taacagggaa tagttcaggc tgtgttgatg
     2521 tatcaaaccc gcagaacata ccaaaacagc aataacattg cggtagtgca tcttttaaaa
     2581 ccagcgtggc gttaaccgat tcaccaggaa taatgaatgg aacttttgac ccaattgctg
     2641 caagccctgt gggcgcagga ttttgaaacc ctggccaatc catcgatgat tggcatgttg
     2701 tattttgtct tgtttgtaat tttgttcctt gaaaacggct tgcttccagc ggccttttta
     2761 ccgggcgaca gtttactggt attggtcggc gtgttgattg cgaaaggcgc gatgggttac
     2821 ccgcaaacga ttctgctgct gaccgttgcc gccagcctcg gctgctgggt cagctatatt
     2881 caggggcgat ggctgggcaa tacccgcacc gtacaaaact ggctatctca tttacccgcg
     2941 cattatcatc aacgcgcaca ccatcttttt cataaacacg gtttatcggc gctgttaatt
     3001 ggtcgcttta ttgcgtttgt cagaacactg ctgccgacga ttgccgggtt atcagggctg
     3061 aataacgcgc gctttcagtt tttcaactgg atgagcggtc tgctgtgggt attgatcctg
     3121 acaactctgg gttacatgct cggcaaaacg ccggtatttt taaagtacga ggaccagctg
     3181 atgtcatgcc tgatgctgct cccggtggtg ctgctggtgt ttggcctggc aggttctctg
     3241 gtcgtgttat ggaaaaagaa atatggaaat cgggggtaag ggatgcaaat acctcgcatg
     3301 tcgcttcgcc agctagcctg gtccggcact gttttacttc tggtcggcac gctgttgctg
     3361 gcctggtccg cggttcgcca gcaagagtct acgctggcga ttcgtgccgt tcatcaaggc
     3421 acaacgatgc cagacggttt ttcgatctgg catcaccttg acgctcatgg cattcctttc
     3481 aaaagtatca cccccaaaaa cgacactctg ttaattacat ttgactccag cgaccagagc
     3541 gccgccgcaa aagcggtcct cgacagaaca ttgccccatg gctacatcat tgcgcagcag
     3601 gacaataaca gtcaggctat gcagtggctg acccggttac gggataactc tcatcgcttc
     3661 ggataacttc ctgttatccg aaacatatca ctcactttgg tgatttcacc gtaactgtct
     3721 atgattaatg aggcggtggt taacactacc gcttcgttgt ctggacaatc gttcctttgt
     3781 aacaggtccg aatcacaatg gaaggttcaa gaatgaaata ccgcatcgct ttagctgttt
     3841 ctctctttgc tcttagtgcc ggtagttatg ccactaccct gtgtcaggaa aaggagcaaa
     3901 atatccttaa ggagatcagc tatgccgaaa aacaccaaaa ccagaatcgt attgacggtc
     3961 tgaataaagc cctgagtgaa gtccgggcca actgttcaga tagccagctg cgtgccgatc
     4021 atcacaagaa aatcgcaaag cagaaagatg aggtggcgga acgccagcaa gatttagccg
     4081 aggcgaagca aaaaggcgat gccgataaga ttgccaaacg cgaacggaaa ctggcagaag
     4141 cgcaggaaga gctgaaaaag ctggaagcgc gcgactacta actcacaata gtcactactt
     4201 actcacctgg agaaaactat gtcgaaagaa cacactacgg aacatctgcg tgctgagttg
     4261 aaatcccttt ccgatacgct ggaagaggtg cttagctcat ctggcgagaa gtcgaaagaa
     4321 gagttgagta agattcgtag caaagcggag caggcactga aacagagccg ttatcgcctg
     4381 ggtgaaaccg gtgatgccat cgccaaacaa acccgtgtcg cggcggcgcg tgctgatgag
     4441 tatgtgcgtg aaaatccgtg gaccggcgtg ggaattggcg ctgcaatcgg tgtagtgctc
     4501 ggcgttctgc tgtcgcgtcg ttaattatgg cggacactca tcacgcgcaa gggcccggta
     4561 aaagcgttct gggcatcggg cagcgaattg tttccatcat ggttgaaatg gtggaaacac
     4621 gtctgcggct ggcggtggtg gagctggaag aggaaaaagc taatctcttt caacttttac
     4681 tgatgctggg cctgacgatg cttttcgctg catttggtct tatgagcctg atggtgctaa
     4741 ttatttgggc ggttgatccg caatatcgcc tgaatgcgat gattgccacc accgtggtgt
     4801 tgctgctact ggcactgatt ggcggtatct ggacgttacg taaatcgcgt aaatccacct
     4861 tgctgcgcca tacacgccat gagctggcaa acgatcggca actgctcgag gaggagtccc
     4921 gtgagcagta aagtcgaacg tgaacgacgt aaggcgcaac tgcttagcca gatccagcaa
     4981 caacggctgg atctttccgc cagtcgtcgt gaatggctgg aggcaacagg cgcttacgat
     5041 cgtcgctgga atatgctgct aagtctgcgc tcctgggcgc tggttggcag tagcgtgatg
     5101 gcgatctgga cgattcgcca tcctaatatg ctggtccgct gggccagacg cggttttggc
     5161 gtatggagcg cctggcgtct ggttaaaacg accctcaagc agcaacagct tcgcggttaa
     5221 cttccctctg gccggagcca ttccggccct atccctcaaa ttttttgaag atttttgaca
     5281 gttttccttg ctaacaatca tcattcacca cgtttatgat tctctccatc gacagcaacg
     5341 acgctaatac cgcgcccttg cacaaaaaaa caatcagcag cctgagtggc gcagtggaga
     5401 gtatgatgaa aaaattagaa gatgttggtg tactggtagc gcgcatttta atgccgattc
     5461 tgtttattac cgcaggctgg ggaaaaatca ccgcttactc tggtacccaa caatatatgg
     5521 aagcaatggg tgtcccgggt tttatgctgc cgctggtgat tctgctcgag ttcggtggtg
     5581 gtctggcaat cctgttcggt ttcctgactc gcaccacagc cctgtttact gcgggcttta
     5641 cgctgctgac ggcattttta tttcacagca agtttgctga aggcgtcaac tcgctgatgt
     5701 tcatgaaaaa cctgacaatt tctggcggat tcctgctgct ggcaattacc ggtccgggcg
     5761 cgtatagcat cgaccgcctg ctgaataaaa agtggtaagc acgcgctata cttaacgata
     5821 aaaaacgagg aggaagctcc tcgtttttgc tattggagga gagaaaaatg gggcaactga
     5881 ttgacggcgt ctggcatgac acctggcccc actggcacag gcggttttat cgcagagaaa
     5941 gatcgttatc atctctatgt ttcactcgcc tgcccgtggg cgcaccgcac gctgatcatg
     6001 cgcaaactca aaggactgga accgtttatt tccgtttccg tagtgaaccc gctgatgctg
     6061 gaaaacggct ggacctttga tgacagtttt ccgggagcaa ccggagatac gctctatcaa
     6121 catgaatttc tgtatcagct ttatctccac gccgatccac actacagcgg acgagttact
     6181 gttcccgtgc tgtgggacaa aaagaaccac accattgtca gcaacgaatc agcagaaatc
     6241 atccgcatgt tcaataccgc gtttgatgcg ctgggcgcaa aagcgggtga ttactaccca
     6301 ccagccctgc aaacgaaaat tgacgaactt aacggctgga tttatgacac cgttaacaac
     6361 ggcgtgtata aagctggttt tgccaccagc cagcaagcct acgacgaggc ggtggcgaaa
     6421 gtgtttgaat cgctggcgcg actggagcag attttaggcc agcatcgtta cctgaccggc
     6481 aaccagctaa ccgaagccga tattcgcctg tggactacgc tggtgcgttt tgatccagtg
     6541 tatgtgaccc acttcaagtg tgataagcac cgcatcagcg attacctgaa tctgtatggc
     6601 ttcctgcgcg atatctacca gatgccgggg atcgccgaaa ctgtcaattt cgatcacatc
     6661 cgtaatcatt acttccgcag ccataagacc atcaacccta cggggattat ttcaattggt
     6721 ccgtggcagg atctcgatga accgcatgga cgagatgttc gcttcggtta aaaaaaggca
     6781 ccttacgagg tgcctctgat aattagctaa gtgcatgttg ttcatgtcgg atgcggcgtg
     6841 aacgccttat caaacctaca aaacgtttat attcaatatg ttaaaatgac cgcgtaggcc
     6901 agataagcgt agcgcatctg gcgattttgc gcttgtcatc agtcttagcg caccttcacg
     6961 gcactttatt aattccttga acgaatattt actgccattt cattcacgtc tattcttaat
     7021 ttgctgcttt aaaaacaagt gattgagcaa aattgaggca aaaatggact ggtatctgaa
     7081 agtactaaaa aattatgtcg gtttccgggg tcgtgcgcgg cgcaaagagt actggatgtt
     7141 tattctggtc aacatcatct ttacgttcgt gctggggctg ctggataaaa tgttaggctg
     7201 gcaacgcgcc ggtggcgaag gcatcctgac gacaatctac ggtattctgg tgtttttacc
     7261 gtggtgggcg gttcagttcc gccgcctgca cgacaccgac cgctcggcgt ggtgggcact
     7321 gttgttctta atcccgttta tcggctggct tattatcatc gtctttaact gccaggcggg
     7381 tacgccaggc gaaaaccgct ttggaccaga tccgaaactg gaaccttaaa acaaatctgc
     7441 tcgccggatg tctgactcat ccggctttta tcatcatgtt gatgaatgaa taatttacta
     7501 atgtttattt aaaatatttc aatgtcgtta tataaattac ctataaaaaa caaccatgta
     7561 tttatcttaa atatcaaaac ctttataaca tccgaaaaag aaagatacga atagcattta
     7621 cacaataccc ggaatagact ttcgtcactt ttaattaaag ggatgttttt atgcagtggt
     7681 atttagccgt attaaaaaat tatgttggtt tctctggtcg cgcacgtcgt aaagagtact
     7741 ggatgtttac tctgattaac gccatcgtcg gcgctattat caatgtcatt caattgattt
     7801 taggtttaga gtttccattc ctttctctca tttacctggc agcaacaatc attccggtca
     7861 ttgctctgtg tgttcgtcgt ctgcacgata ctgaccgttc aggtgtgtgg gcgcttctct
     7921 atctggtacc gatcattggc tggttagttc tgtttgtatt tgcctgttta gaaggcaatt
     7981 ctggcagcaa tcgttacgga aacgatccta agtttggttc aaattaatct tagaattggg
     8041 gcgatatttc gccccttttt attaacaata ataaatatta ttttccgcta aaaagtttgg
     8101 gaatttcccg cagacaccag gatttcgctt cccccatact gtcacgacgc caggccataa
     8161 taatatcgat ctcgctggtc gattccgggc tgacgacacg caaccgccct tccgcaatat
     8221 ctttttcgac catcggatac ggcatcgtcg ccacgccaag ccccgccagt aatgcctgac
     8281 gtttatcttc aatcgtgctc accgttaagc gcggctgttt gtccagcagc tgtacggtca
     8341 acaccgggcg ctcacgagcg gtatccgcta ccgcaattcc acgatatttc acgcgcgtca
     8401 cttcagataa cggttccggc tcctgatgaa tcgggtgatc aggcgcggca acgtagacgt
     8461 tcattaaggt atagagcttg cgcgagttga tctccgacga ggaacgaaaa tgcatatccg
     8521 gcgcgataac gatatccgcc cgcccctgct ccagtcgttc ccacgccccc gccagcactt
     8581 cggtgatgat tgccagttgg gtattggctt ttgccgccag tttgtcgatt aacgggaaaa
     8641 aggcaggtgt cggtaccagc gcctcggtca caatggtgag atgcgtttcc caaccgcgcg
     8701 cgagggcttc cgcatcggta gtcagtttat ctgctgcttc cagcaaaacg cgccctcgct
     8761 ccagcaacat cctcccgaca ttggtgaatt tggtgcgatg gcccgagcgg tcaaacagca
     8821 ccacatccag ctcttcttcc agtttttgca tggtgtagct aagtgcggaa ggcacgcgtc
     8881 ccagctcatc cgccgccgcc gcaaaactgc cccggcgatc gatcgcatcc ataacccgta
     8941 gtgcttccag cgttaatgcc ctttctttgg ccatttcgtt ctcattcagg aaatttgaac
     9001 ataccgggca gaatatctgg ctaacaatgt agcgtccagc cccttaccat aaaaggaagt
     9061 aaagagaggt caagaattat gattactacc cgaactgcca ggcagtgtgg acaagcagac
     9121 tacggatggt tgcaggcccg gtatactttt tcctttggac actacttcga cccgaaattg
     9181 ttaggctatg cctccctgcg tgtgcttaac caggaagtgc tggccccagg tgccgccttt
     9241 cagccgcgaa cctatcccaa agtcgatatt ttaaatgtga ttctggatgg agaagcagag
     9301 tatcgcgaca gcgaaggcaa tcatgttcag gccagcgccg gtgaggcgtt gctgctctct
     9361 acccagccgg gtgtcagcta cagcgaacac aatctcagca aagacaaacc gttaacacga
     9421 atgcagcttt ggctggacgc ctgcccgcag cgagagaatc cgctgattca aaaactggcg
     9481 cttaatatgg gcaagcagca attaatcgcc tcgccagagg gtacgatggg aagcctgcaa
     9541 ttacgccagc aagtgtggct gcaccatatc gtgctcgaca aaggcgaaag tgcgaatttc
     9601 cagttgcatg ggccacgcgc gtatttgcaa tcgattcacg ggaaatttca tgcgcttacg
     9661 catcatgaag agaaagcggc gctgacctgc ggtgatgggg cgtttattcg tgacgaggct
     9721 aacattacgc tggttgccga ttccccactg cgcgctttgc tgatagattt gcctgtctag
     9781 ttgtttttac agggagatga tgatgagtaa aaaatcggcc aaaaagcgcc agccagtgaa
     9841 gcccgtggtg gcgaaagaac ctgctcgcac cgccaaaaat tttggctatg aagagatgtt
     9901 gagcgagctg gaagccatcg tcgcggatgc tgaaacgcgt ttagccgagg atgaagctac
     9961 cgcgtaaaga caggttgccg gatgcggcga aaacgcctta tccggcctac aaaatccaac
    10021 aacattaacg aattaaacaa cccgtaggcc ggataaggtg cgccagcatc gcatccggca
    10081 caatactcaa aacctggcgt ttatctggcc ttgctcgcca taatctcgat aatctgccga
    10141 tccgtttgct gcatcgaatg gcttgctaac gcacacaggt tggcaatcga ctgctcaaca
    10201 tcatgcgcca cgatcccttc attgccggtc acggcggtat catccagcgc cattaacacc
    10261 gctttccacg cagccgaagc actggtcgaa accttcatcg cgcagctgtt cgacgcacca
    10321 tcgcaaatca tgccgctgac atcgccgatc atactgctga tcgccatcga gatagtttca
    10381 taacgcccat ccaccagcca tgccatcccg gcggcggccc ccattgctgc ggtcgttgcg
    10441 gcacaaagtg cagacaaacg cggtaactgg ttatggatgt aaattgcgct caaatgagaa
    10501 agcatcagcg cacgcgccag tcgttcatca tccgctccga agtgttctgc tacaaccacc
    10561 acaggcattg ttgcggtgat cccctggtta cccgagccgg agttactcat agccggaagc
    10621 gtagcgccgc ccatacgcgc atcggatgcc gcgctggtac gaatcacaat ggatgaagag
    10681 agatctttcg ccagcaaacc gcgctcgcac tgtttttcca gcgtcgcgcc aatatgcagc
    10741 ccccacttac cgctcaaacc ttcctgcgat aacgcacaat ttagcttcgc ggaatcgaga
    10801 ataaagcgga tcgccgcaaa cgggacttca ttgacgaact tcaggatctc agccagcgtc
    10861 gttctggaaa gcaccgtcag cggagactct tgctcgccct ctgccacaca cgcctgctgg
    10921 gtaaacacca cactattgtg cgtctcaata tgcacaatgt tggtatgccc gccgacgatg
    10981 gtgacacacg cccacttctc accgttccag actttggcgc gtgagaagag gatttcattg
    11041 caaggttcct ggatcttaac ggagactttc cccgccgcca gcagtgcttt ggcatcggca
    11101 attgcctgcg cagttgcgtc tttcagcact tccagcccgg cgttggcatt tccacctaac
    11161 gcccccagcg ccgccgcaat cggcagcccc accattcccg tgccgggaac ggtgacgccc
    11221 agaccgttct tcatcagatt tggcgaaacc caggcttcta cacgttcaac cggaccttcc
    11281 agttctgccg cagcaaccgc cgccgccagc gccagtgaaa tcggttcagt acatcccagc
    11341 gccggtttta cttcctcctg aacggcgagg atgtaacgct gccataacgg atttaaagtc
    11401 gaatcaaaca tattaaaaac cttaaaattt caggtaaatc aagaaaatgc caggaacgga
    11461 gaaacacaaa gcaacaaacc agtgacgata atcaggtaca gagacatccc tttgtatttg
    11521 tgcaatgccg gtactttgta aaccagccac gccgggatca ggcaccctac catgccgaaa
    11581 atcgggctac agatagaggt gaagctcaac accggtgcgt tcagtacgat ggcgctccag
    11641 gccagcaaaa tggcgaaaat catgatgccg cgctgaacaa gattttcgtt aatcttctcg
    11701 gcaggcatct tgcgacgcag gatgttcatt acgatccctt gcgttgcttc gcgaaagcct
    11761 aaatagacgc caaagaatgc agtcatgaca gcaaagatat tgagaatgac gctgaccact
    11821 ttcacccacg ctgcgccgtc accgctaata aactgtgcgg caatcgccag cgcggaaata
    11881 ttctgctcgt aggcttttac cgcttcgtca tgtcccatcg ccagcgtgaa cgacacggcg
    11941 tagaaaaaga cggtgacaaa taaaatgcca aacgcgatat tcattgcccg caatgcttta
    12001 tgccgcgcca cttcaattga tttttcccgc gagcgataag agatcaccat cgggcttaac
    12061 gtctggataa acagaatcga cgtcagggta aacggcagcg taataatggc gtttttcacc
    12121 agcagcccca gcggcggtag cgaaccgacg ttatacagat gccacattcc caccatcgac
    12181 acgcccagcg cagcgactac cagcagcttg gtcagcacca tgccggtcga aattttgaat
    12241 aacaatttct cgccgcgtga agagatcgcc accagaatgc aaatcagtac cagaccataa
    12301 aagggactgt ctgacagcac cccttccgtc acgccgaagg tatgcagata ggaagcacta
    12361 tcgttggtga tggcggtgga atagacgaac atccaaatca ccagcattac gaaatagagc
    12421 gcacctaaca ggatgcccca gtttttacct aaataaccgc taatgacact cgggtaatct
    12481 ttacattctg tgtgattctg ccagcgtatt aataaacaac cgctgaaaca gatacattgc
    12541 cgggtaacca atcaccgatg agagcaaaaa tacccacaat cccatcaaac cgacctgcac
    12601 cgggagaaaa acaatccccg cgccaatcgc catcccgata ctcataatca cccagccggt
    12661 gtcagtactg tcgaatttga tcgcttctcg ccactcgctc tcactcattc cagcacgacc
    12721 cgccggggtc gaagcgtctg caatgacgcc tttattcgat gcaatttcca taatttctcg
    12781 ctcaatattt tgtagggctt attatttttt tccgagccgc atcaaggcga tatgcggtct
    12841 acgtttttgc aggcgagtta ttagaataaa gaaatgatac gcgcgaggtc agagaaaatc
    12901 ttcacaatca agactttgaa ataacggaga tggataagaa ttttctacta aattaatcgc
    12961 aagagaatat tcattctcta tttgcggcag atcacaaaaa aaggtgcaca tttgtgcacc
    13021 caaggatgaa agctgacagc aatgtcagcc gcagaccact ttaatggcca gtcctccgcg
    13081 tgatgtttcg cggtatttat cgttcatatc tttgccggtt tcatacatcg tctcgatcac
    13141 tttatcgagt gaaacacgcg gtgccgaggt gcggcgcatc gccatccgcg cggcgtttac
    13201 tgctttcacg gcattaatgg cattacgttc aatgcacggg atttgtacct gtccggcaac
    13261 cggatcgcag gtcagcccaa ggttatgctc catcgcgatt tccgccgcat tgcatacctg
    13321 cgccggactg ccgcccagta gttcagttaa ccctgccgcc gccattgaac aggccacgcc
    13381 aatctccccc tgacagccga cctccgcgcc agagatggag gcgttcattt tatacagcgc
    13441 gccaatagcc cccgctgcca gaaaatagcg ggcaattgac cgctcgttta ccggacgacg
    13501 gaacttatcg taataagcca gcactgccgg aataatgccg cacgcaccgt tagtcggtgc
    13561 cgttaccacg cgcccgccag ctgcgttttc ttcactaacc gccagcgcgt acatgttgat
    13621 ccagtcgatg acattcatcg gatcgttaga gatgttatcg ctagaaacca gctgacgacg
    13681 cagcgctacg gcacgacgcg gcacattgag cggaccaggc agcacgcctt cagtgttcat
    13741 cccgcgttca ataccgtcat gcatcacttg ccagatacgg gcaaaccctg cgtcaatttc
    13801 cgctttgctg cgcagcgcca gctcgttgtg catcatcagg ccagatatag acaggccgtt
    13861 gtaatcacac attttcagca gttcacctgc tgagtggaaa tcgtaaggta cggacgtttc
    13921 gacatcgtgc gacaggccga agtgttcttc ttcgacaata aacccgccgc cgacagagta
    13981 ataggtttta cttaatagcg cttcctgtcc cttccaggca gtgatccgca ttccgttctc
    14041 atggcgaggc aacatttcgg gatggaagat aatgttcttt gctacaggaa aatcaacaat
    14101 atgcgcacca gatgccactg gcagccgccc gctgcgcgtt actaactcta taaatgcagg
    14161 gatctcatca atgacaacat cctgcggact gtttcctgcc agtcccatga taatggcgac
    14221 atccgtggca tggcctttgc ccgtcagtga caacgcccca tacagatcga ccacaatatg
    14281 gctcgtcgcg gttaataagc cgctactttc cagccgatca ataaaacttt ttccggcatt
    14341 cattggcccc acggtatgcg aactggaggg accaatccca attttgaaaa tatcgaatgc
    14401 actaatcata tccacaccct cggattgccg ttcagtgaag tggagcggaa cgaccttgcg
    14461 accgtcccgc tcacgaggct ttacgcacta cgtactgcga tagcttcaat ttccagcttc
    14521 acatctttcg gcaaacgcgc aacctgcaca cagctccggg tcgggtaggt cgcctgatgc
    14581 tcatcgaaga actgcttata gacttcattg atggtggcaa aatcattcag atcggtgatg
    14641 aacacggtca tcttgatgat atcgcccacg ctcagcccgg cagcaaccac gatcgctttg
    14701 acgttttcga ggcttaaacg cgcctgatct tgcacatcag ccgggatctc accggtctgc
    14761 gggcaaaccg gaatttgccc ggaggtgaag accatgctgc ctaaatcaac gccctgaaca
    14821 taagggccga ttgcgcctgg ggcacgttgc gtttcgataa tctttttcat acatcctccg
    14881 gcgtcagagc gcctgggtaa aagtacgtga aataacatcc tgttgctgtt cacgggtcag
    14941 tgcgttgaag cgcacggcgt agccagagac acggattgtc aggttaggat atttttccgg
    15001 gtgctcgatg gcatccagca gcatttcccg attcattatg ttgacgttga ggtgttgacc
    15061 gccttcgaca tccgcttcgt ggtggaaata cccatccagc aggccgacaa ggttggtttt
    15121 acgtactgga tcttctttgc ccagcgccgc aggaacgatt gagaaggtgt acgagatccc
    15181 atctttggcg taggtgaacg gcagtttcgc caccgacgtc aatgaggcca cggcaccttt
    15241 gcggtcacga ccatgcatcg ggttagcgcc cggcgcgaac ggtgttccgg cgcgacgacc
    15301 gtccggcgta ttaccggttt tctggccgta caccacgtta gaagtgatag tcagaatcga
    15361 ctgggtaggg acggcgttgc gataggttgg cagcgcttta attttcttca taaagcgttc
    15421 aaccaggtcg caggcaatgc tgtctacgcg ctcgtcgttg ttgccgtact gcggatattc
    15481 accgtcgatt tcaaagtcca ccgccaggcc gttttcgtca cggattggtt tcacgcgggc
    15541 atatttgatg gcagacaggg agtccgtcgc caccgacagg cccgcgatgc cgcatgccat
    15601 agtgcgatag acatcacgat cgtgcagcgc catcagcgaa gcttcgtagc tgtacttgtc
    15661 gtgcatgtag tgaatgatat tcagcgcgct gatgtactgc accgccagcc agtccatgaa
    15721 gtgatcgagg ctgtccatca ctttgtcgta atccagcacg tcgtccatca gcggtgctgt
    15781 tttcggcccg acctgaatct tcagcttctc gtccaccccg ccgttaattg cgtagagcag
    15841 cgttttcgcc aggttagcgc gtgcaccaaa gaactgcatt tgcttaccaa tcaccattgg
    15901 gctgacgcag caggcaatcg cgtaatcgtc gctgttgaag tcagtacgca tcagatcgtc
    15961 attttcatac tgcaaggaag aggtgacgat cgacacctgc gcggcatatt ttttgaaggc
    16021 aatcggtaat tcttccgacc aaagaatggt caggttaggt tccggtgccg gccccatagt
    16081 gtgcagggtg tgcaaatagc ggaaggagtt tttggtcacc agcgtacgac cgtccagccc
    16141 catcccgccg atcacttccg tcgcccagat tgggtcgccg gagaacagcg aatcaaattc
    16201 cggtgtacgc aggaagcgta ccatacggat cttcatgatg aagtgatcga tcagttcctg
    16261 tgcctgctgc tcattgagta cgccagcttc aaagtcgcgc tcaatgtaga tatcgaggaa
    16321 cgatgccgtg cggcccagcg acatcgcgcc gccattttgc gatttcactg ccgccagata
    16381 agcgaagtag agccactgca ccgcttcttg cgcattctgc gccgggcgag agatatcaaa
    16441 gccatatttc gccgccattt cctgaatctg caacagcgca tgacgatgct ctgccagctc
    16501 ctcacgcaga cggatggtgg cttccagatc ctcgcctttt tccagacgag actggagatc
    16561 ggcaaattgc agttcgcgtt cacgtaccag ataactgatg ccatacagcg ctacgcggcg
    16621 atagtcaccg ataatgcgcc cacggccata gccatctggt aaaccggtca gcacgccaga
    16681 tttacggcag cgcagcatat ccggtgagta aacatcaaat acgccctggt tatgggtttt
    16741 acgcagatcg gtaaacagat attcaaattc actgtccatt tcacggccat aggcgtggaa
    16801 tgaactttta atcatattaa tgccaccgaa cgggtgtagc gcacgtttca acggcgcatc
    16861 cgtttgcagg ccaacaattt tttccagcgg ctggttaata tatcccgcat catgagcggt
    16921 aattgtggtg gcaatattgg tatcgaaatc aaccggcgcg tgggttgcgt tttcgatacg
    16981 gataccttcc attacttttt cccacaattc cgtggtggca ggcgtcgctt cggcgaggaa
    17041 agattcatcg ccttcatacg gtgtatagtt atgttgaata aaatcgcgga cattaatttc
    17101 gtttttccag tccgtacctt taaagccaag ccatgcgtcg gcgtacagct tatcgctggt
    17161 atcaatatct accttcatga aaaataatct ctctacaata cttcaactaa attatgcaaa
    17221 ttctgcgggc gcgttaactt tgcctaaatg aatggcatcc aaagcaatca ttttttcttc
    17281 gttagtcgga ataacagcgc aaatgacacg cgcattttca ctggaaacaa ttcgctcacc
    17341 acaggagtta gagcgattat tcatttctgt atcaatctct acgcctaata cagccaaatg
    17401 ttccatgacc agacgacgaa ttaagcttga attctctcct attccgccgg tgaatataat
    17461 tccatccagg cgacgtaatg aagctgcgtg tccggcaata tgacgggcaa ttcggtgaac
    17521 aaaggtttta attgccagtt gcgcgcgttc gtgaccttca tgccaggctt tttccagaac
    17581 acgtaaatcc gaagaaagac cggaaatacc taataatccc gactctttat tcactacgcg
    17641 ttccaggtca cccaagctct ggttggtttg gctggcgacc caggacatcg caccaaaatc
    17701 gacatcgcca ctgcgggtac ccatcatcaa gccttccagc ggcgtcattc ccattgaggt
    17761 gtcaacactc tgaccgttgc gaactgcgca gattgacgcg ccattgccaa gatgcgccac
    17821 aaccaggccg gagtcatctt ccgctagatt cagcaaagaa tgtgcgcgct gggaaacata
    17881 gcggtgcgac gtgccgtgga aaccataacg gcgtacacct aactcttcat aatatttcca
    17941 cggcaggccg tataaataag cttccggagc catcgtctgg tggaaactgg tatcaaatac
    18001 cgccacctga gttacgcccg gaaataattg ctgcgccgat tcaataccac ttaaattggc
    18061 gtaattatgc aggggtgcca gtggagaaac gcgacggata ttatcaatga cctcatcggt
    18121 aataatggcg gactcggtaa aaatactgcc gccgtgagcg atgcggtggc caattaaggc
    18181 cacactgtca tttaaattcc gtttttccag ttcaaatgca attgccttca atgcaccttc
    18241 gtagctgtgg tgagccagcg gtgctggctc tcccccattt acggataaga atgcattttc
    18301 tgagttaata ccgtcggcaa tacctgacat taatacttca cagtcgctgg catcgagtac
    18361 ggaaaactta atcgaagacg aaccacagtt aataaccaaa acaaccggaa attcattcat
    18421 ctcttttctc atcctgagtt acggattaaa acagtttgta tacgatgttc aggatggtca
    18481 gcagaccaat cacggtaaca aacacgttat ccagacgacc acggtatttc gccagagacg
    18541 gtgctttacg gatggcatac atcggcaaca ggcacagcag ggatgcgata atcggtgcgc
    18601 ccatggcttc aataaggtcg aggatgttcg ggttggcgta ggcaacaacc caggtggagc
    18661 ccatgatgaa gatcatgctg atagtgttca gtttacccag cgacacttta gttttgtcgc
    18721 ctttataacc gaacttcaga atcagaccat tcaagccttc cagcgtcccc agatagtgac
    18781 cgaagaaaga tttgaagata gccacgagtg cgatgatgga agccgcatat tccagtgtaa
    18841 tcgcgaacgt tgttttggta ccggtcatgg acgcaaagtg gttagccaga taagaaagca
    18901 ctggaatatt ctgcgctttg gcttccgcca tgttggccgg agacagcgta aacaggcagc
    18961 taaaggcaaa gaacatcacc actgcaacca tcagcatgct ggcacgagaa atgatttggg
    19021 aacatttacg ttcggtgaag tcgcgaccga agtctttctc atactcttca cgtttagaaa
    19081 ccacgaagga agagacgatt ggcgagaagt taaaggagaa aaccatgatg gaaatcccca
    19141 gccagacagt gatcaggata ccgtcatgac cggttaacga cagcgaaccg aggtcaacct
    19201 ggtcgataac tgcagagttc cagtaaggga tcagcgacag agaaatcagc accaggctgg
    19261 cgataaacgg ccataccagg tagctcatca ctttaaccat cagatcctta ccaaaccaga
    19321 tgacgaaagc catcagcagc aacaggaaca gcgccacaaa gccgcgattc agcggtgcaa
    19381 atccgagctg gttttcccag aacgtcataa aggtattggt aatagtaacg ccataaatcc
    19441 acagcagtgg gcaaatcgcg aagaagtaca ggaacgtgat aaccacgccg ccagttttac
    19501 caaaatgctc ttccaccgtt tccgtaatgt tgccggaagg gttagagcca gaaagacaca
    19561 gacgcgccag cgcccggtgg caataaaatg cgatggggta tgccaatacc aacatcagaa
    19621 gaatcgggat cagtccgcca aaacctgcgc ggatagggaa gaacagcacc ccggcgccga
    19681 ttgccgtacc aaacaagcct aacgtccatg tggtatctga tttacgccag gacgattgtt
    19741 ttgtctggct ggatacaatg ctatctgaag tactcatatc ctatcctcaa cgaattaatt
    19801 aagcgtcaac gaaaccggtg atttgagaga cgcgagaaag atcgatattg ccgccggaaa
    19861 taatactgac ggtttttctg ttttgaatat attggtctaa tttaccgctt aataatgcag
    19921 cacatgccag agcacctgcg ccttcggtga cgactttatt gcgctgaatt aaggcaatca
    19981 tactgtttct gatttcgtct tcgctgacca gcacgatgtc atcgactaat tcacgaacga
    20041 tttcgtaagt taaattaccc gggcgggaga catcacaacc atccgccagg gtgccggtag
    20101 ttcggtgcgt ggttatttct ccggagtgga aagaagccgc catgccgtga acgttttctg
    20161 actgtacgcc aataacacga atggtcgggt taatagattt aattgccacc gcaataccag
    20221 caattaaacc accaccacca attggcacaa tcacgttatc gacatcatag agatcttcca
    20281 taatttccag accaatcgtt ccctggccag caatcacttt cggatcatcg taaggtggga
    20341 taaaaatacg accttccatt tcgacaattt cgctcacttt agcgatagtg tcgttgaagt
    20401 tatcaccatg cagaacgact tctgcggagt agtcgcacgt tgccgctact ttggattttg
    20461 gcgcaccttt tggcatcacc actttaccgt cgatacccag catcgcgcag gagagcgaaa
    20521 ccccttgcgc atggttgccc gcagaacagg ccaccacgcc tttgcgtttt tccgcatcgg
    20581 tcagtgaact taatttatta aatgcgccac gaattttaaa tgaacccgta cgctgcatat
    20641 tttcaaactt caggaatatt tcacctttgc aacgttcact aaaatagttg gagcgaggca
    20701 tgcctgtttt ataaattcgc ccagccagtc gttgtttcgc ttcaataata tcatcaatag
    20761 caaccggcag atcgtatgta atatgcatta taaaacctct tcgcctgaat taaatatgta
    20821 gataaccgta accgacacct gcaaaacaga caggtggatt atttatgttt aaataaaaac
    20881 aaataactaa ccaacttcta ttaatagcct tcgtctacac ccattataag atgaatactc
    20941 tttggctaat tccaccaaaa ccgatgctgc ttttttaata cgataatttt tcgaccatac
    21001 cgcggcatat tgtgccacag gtaatgtttc ttcaactgga atagtaataa attgatttga
    21061 accaaaaggt gacgtcatat cacaaggaat tacagttaag aaatcagcat tgagaacaag
    21121 attataaatt gtcacgactg agtcggtttt aacgatgttt tcaatactga tgccatttct
    21181 ttgtaacgta gtaagaagct cgctgtagta ccccatattg gtttgtggca acacccactg
    21241 ttcgttcttc aacgactcca gcgtggtggt gccggtgcat gttcgggact tactggctac
    21301 cagcacaaac tcggactcga acagcggctc aacatgtaaa tcctgaagct tcatttctgc
    21361 acttaacgta ccaatcgcaa aatccagtcg accgtcgcgg attgccggta agaacgaaga
    21421 cagttgcgct tcatacatag aaacctgcgc tttcgggaac acctctttga acttgttgat
    21481 catccctgac ataaaagtaa aaccaatcaa tgaaggaaaa ccaaatgaga cttccaccac
    21541 cgcctcagaa gacataccgc ttatctcatt aaccatattt ttcatttcac gggtaatgga
    21601 ttcggaacgg gagagtaaca attgaccggc aggtgttaat gttacaccgg tatttttccg
    21661 caccactaat tccacaccaa aataatcttc aatatcgtta atgattttac tgacggccgg
    21721 ttgagttaac cctaattctt ttgcagccga gccgatagag ccacttctaa tgacttcctg
    21781 aaagactacc aggtgctgcg ttttcggaag aagaatagtg ctcataacga cctacgttaa
    21841 ttacctcatt gacggcatga agtgtatcaa aatgaaatga acaggatatg tgcgaccact
    21901 cacaaattaa ctttcattac tttccagggt atcgttatta caattaaata tttttaaata
    21961 tcaacaagtt aaaacataaa aatcagcata aaccctgatt tttatcaaaa aaaatgacgg
    22021 ggataaccat attttatggc gataacatca ttcgttatgt ggttaataca aaaaaggggc
    22081 tgagaccata tttcaagcaa ttaccggata attaccaggc aaaatttgag ttaaatttaa
    22141 tgagcaagtt ctcaaatttt attataaata aaccattttc agcgataaat actgcggcac
    22201 gtcacatttt ttcacgctat ttgttggaga acaaacattt attttatcaa tattttaaaa
    22261 tttcgaatac aggtattgat catctcgaac aattgattaa cgtcaacttt ttctcttctg
    22321 acaggacgtc attttgtgaa tgcaatcgtt ttccataaat tcttctcccc tcataggcga
    22381 cgaatagcat tttgtgttga ggatcacaaa acaaataatt gctggtcgcc gcgataaggt
    22441 cagacgaagt caacaagggg aattttcact gtgctttaca tcagcgtagg acacagaatg
    22501 ttgcttcgtt tactgtaacg ccgggtaaat gagcgttttt tgatagtgcg taagtgtcgt
    22561 gcgaggaaaa taagcatcta ttattgtttg tcatgacgac aaggcaggca tcaatgaaag
    22621 gcttcccaat tgcacatatt tttcaccctt caatcccgcc aatgcacgca gtggttaaca
    22681 atcacaatag aaatattgat tattggacgg taaaaagaaa gtttgcagaa attgtctcca
    22741 ccaatgacgt taaaaaaatt tacagtataa gtaatga
//
LOCUS       DADMJB010000054        22768 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.054, whole genome shotgun sequence.
ACCESSION   DADMJB010000054 DADMJB010000000
VERSION     DADMJB010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22768)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22768)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22768
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.054"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            235..718
                     /locus_tag="JN078_001870"
                     /pseudo
     CDS             235..718
                     /locus_tag="JN078_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000553611.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-associated peptidase"
     gene            821..944
                     /locus_tag="JN078_001871"
                     /pseudo
     CDS             821..944
                     /locus_tag="JN078_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708157.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1877 domain-containing protein"
     gene            913..1176
                     /locus_tag="JN078_001872"
     CDS             913..1176
                     /locus_tag="JN078_001872"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1877 family protein"
                     /protein_id="HAY9041096.1"
                     /translation="MTRFQDYADWILINAGIFYTFGLTGTPAFDPAKNDPLSRAVLGE
                     HSLEDGIDGFLGLTWNQELAATIDRLESLDRSKLRKQFSIKRL"
     gene            complement(1391..2848)
                     /gene="nuoN"
                     /locus_tag="JN078_001873"
     CDS             complement(1391..2848)
                     /gene="nuoN"
                     /locus_tag="JN078_001873"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416779.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoN"
                     /protein_id="HAY9041097.1"
                     /translation="MTITPQNLIALLPLLIVGLTVVVVMLSIAWRRNHFLNATLSVIG
                     LNAALVSLWFVGQAGAMDVTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNK
                     DEFYLLVLIAALGGILLANANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYT
                     ILSAAASSFLLFGMALVYAQSGDLSFVALGKNLGDGMLNEPLLLAGFGMMIVGLGFKL
                     SLVPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAII
                     AFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQTGEMSMEAVGVYLAGYL
                     FSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGF
                     IGKFYVLAVGVQAHLWWLVGAVVVGSAIGLYYYLRVAVSLYLHAPEQPGRDAPSNWQY
                     SAGGIVVLISALLVLVLGVWPQSLISIVRLAMPLM"
     gene            complement(2855..4384)
                     /gene="nuoM"
                     /locus_tag="JN078_001874"
     CDS             complement(2855..4384)
                     /gene="nuoM"
                     /locus_tag="JN078_001874"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HAY9041098.1"
                     /translation="MLLPWLILIPFIGGFLCWQTEHFDVKVPRWIALITMGLTLALSL
                     QLWLQGGYSLTQSAGIPQWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAV
                     LCSWKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHK
                     ASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSG
                     VEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSL
                     PLFPNASAEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGS
                     QLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFA
                     VATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKS
                     QIASQELPGMSLRELFMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQWFVNSVTTTR
                     P"
     gene            complement(4548..6389)
                     /gene="nuoL"
                     /locus_tag="JN078_001875"
     CDS             complement(4548..6389)
                     /gene="nuoL"
                     /locus_tag="JN078_001875"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HAY9041099.1"
                     /translation="MNMLALTIILPLIGFVLLAFSRGRWSENVSAIVGVGSVGLAALV
                     TAFIGVDFFANGEQAYSQPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMY
                     ASWYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTD
                     PKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWA
                     TLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMT
                     PEILHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFH
                     LMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYFCFLVGGAALSALPLV
                     TAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIHAHAVKG
                     VTHSLPLIVLLILSTFVGALIVPPLQSVLPQTTELAHGSMLTLEITSGVVAVVGILLA
                     AWLWQGKRTLVTSIANSAPGRLLGTWWYNAWGFDWLYDKVFVKPFLGIAWLLKRDPLN
                     SMMNIPAVLSRFAGKGLLLSENGYLRWYVASMSIGAVVVLALLMVLR"
     gene            complement(6386..6688)
                     /gene="nuoK"
                     /locus_tag="JN078_001876"
     CDS             complement(6386..6688)
                     /gene="nuoK"
                     /locus_tag="JN078_001876"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015833671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HAY9041100.1"
                     /translation="MIPLQHGLILSAILFVLGLTGLVIRRNLLFMLIGLEIMINASAL
                     AFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG"
     gene            complement(6685..7239)
                     /gene="nuoJ"
                     /locus_tag="JN078_001877"
     CDS             complement(6685..7239)
                     /gene="nuoJ"
                     /locus_tag="JN078_001877"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001774950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HAY9041101.1"
                     /translation="MEFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFF
                     SLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAI
                     MLVVIVYAILGVNDQGIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR
                     EERAGEVLSNRKDDSAKRKTEEHA"
     gene            complement(7251..7793)
                     /gene="nuoI"
                     /locus_tag="JN078_001878"
     CDS             complement(7251..7793)
                     /gene="nuoI"
                     /locus_tag="JN078_001878"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015959823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HAY9041102.1"
                     /translation="MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRY
                     RGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFC
                     GLCEEACPTTAIQLTPDFEMGEYKRQDLVYEKEDLLISGPGKYPEYNFYRMAGMAIDG
                     KDKGEAENEAKPIDVKSLLP"
     gene            complement(7808..8785)
                     /gene="nuoH"
                     /locus_tag="JN078_001879"
     CDS             complement(7808..8785)
                     /gene="nuoH"
                     /locus_tag="JN078_001879"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015875065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HAY9041103.1"
                     /translation="MSWISPELIEILLTILKAVVILLVVVTCGAFMSFGERRLLGLFQ
                     NRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVP
                     VSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFL
                     GLSLMGVVAQAGSFNMTDIVNSQAHVWNVIPQFFGFITFAIAGVAVCHRHPFDQPEAE
                     QELADGYHIEYSGMKFGLFFVGEYIGIVTISALIVTLFFGGWQGPLLPPFIWFALKTA
                     FFMMMFILIRASLPRPRYDQVMSFGWKICLPLTLINLLVTAAVILWQAQ"
     gene            complement(8782..11508)
                     /gene="nuoG"
                     /locus_tag="JN078_001880"
     CDS             complement(8782..11508)
                     /gene="nuoG"
                     /locus_tag="JN078_001880"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311194.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoG"
                     /protein_id="HAY9041104.1"
                     /translation="MATIHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGA
                     CRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHD
                     CPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRY
                     YKDYADGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEICPTGVFTDKTHSERYNRK
                     WDMQFAPSICQQCSIGCNISPGERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLK
                     DRPRQPVQRRGDDFITLNAEQAMQGAADILRQSKKVIGIGSPRASVESNFALRELVGE
                     ENFYTGIAHGEQERLQLALKVLREGGIYTPALREIESYDAVLVLGEDVTQTGARVALA
                     VRQAVKGKAREMAAAQKVADWQIAAILNIGQRAKHPLFVTNVDDTRLDDIAAWTYRAP
                     VEDQARLGFAIAHALDNSAPAVDGIEPELQSKIDVIVQALAGAKKPLIISGTNAGSLE
                     VIQAAANVAKALKGRGADVGITMIARSVNSMGLGIMGGGSLEEALTELETGRADAVVV
                     LENDLHRHASATRVNAALAKAPLVMVVDHQRTAIMENAHLVLSAASFAESDGTVINNE
                     GRAQRFFQVYDPAYYDSKTVMLESWRWLHSLHSTLLSREVDWTQLDHVIDAVVAKIPE
                     LAGIKDAAPDATFRIRGQKLAREPHRYSGRTAMRANISVHEPRQPQDIDTMFTFSMEG
                     NNQPTAHRSQVPFAWAPGWNSPQAWNKFQDEVGGKLRFGDPGVRLFETSENGLDYFTS
                     VPARFQPQDGKWRIAPYYHLFGSDELSQRAPVFQSRMPQPYIKLNPADAAKLGVNAGT
                     RVSFSYDGNTVTLPVEIAEGLTAGQVGLPMGMSGIAPVLAGAHLEDLKEAQQ"
     gene            complement(11561..12898)
                     /gene="nuoF"
                     /locus_tag="JN078_001881"
     CDS             complement(11561..12898)
                     /gene="nuoF"
                     /locus_tag="JN078_001881"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HAY9041105.1"
                     /translation="MKNIIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTG
                     LSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDR
                     LLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNI
                     MGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNN
                     VETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILED
                     YAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAGSRLGTALAMAVDHEIN
                     MVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLG
                     PGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQPFSNTHLINGIQPNLLKERW"
     gene            complement(12895..13395)
                     /gene="nuoE"
                     /locus_tag="JN078_001882"
     CDS             complement(12895..13395)
                     /gene="nuoE"
                     /locus_tag="JN078_001882"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012124159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HAY9041106.1"
                     /translation="MHENQQPQTEAFELSAAEREAIEHEMHHYEDPRAASIEALKIVQ
                     KQRGWVPDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGY
                     QGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPE
                     LLERYK"
     gene            complement(13398..15200)
                     /gene="nuoC"
                     /locus_tag="JN078_001883"
     CDS             complement(13398..15200)
                     /gene="nuoC"
                     /locus_tag="JN078_001883"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C/D"
                     /protein_id="HAY9041107.1"
                     /translation="MVNNMTDLTAQEPAWQTRDHLDDPVIGELRNRFGPDAFTVQATR
                     TGVPVVWIKREQLLEVGDFLKKLPKPYVMLFDLHGMDERLRTHREGLPAADFSVFYHL
                     ISIDRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMM
                     PQTWKGHPLRKDYPARATEFSPFELTKAKQDLEMEALTFKPEEWGMKRGTENEDFMFL
                     NLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIE
                     YLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMT
                     PVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLA
                     SYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENF
                     DFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERT
                     LQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSY
                     AHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR"
     gene            complement(15294..15956)
                     /locus_tag="JN078_001884"
     CDS             complement(15294..15956)
                     /locus_tag="JN078_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017490251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HAY9041108.1"
                     /translation="MDYTLTRIDPNGENDRYPLQKQEIVTDPLEQEVNKNVFMGKLND
                     MVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTC
                     FTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPP
                     RPEAYMQALMLLQESIGKERRPLSWVVGDQGVYRANMQSERERKRGERIAVTNLRTPD
                     EI"
     gene            complement(15972..16415)
                     /gene="nuoA"
                     /locus_tag="JN078_001885"
     CDS             complement(15972..16415)
                     /gene="nuoA"
                     /locus_tag="JN078_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoA"
                     /protein_id="HAY9041109.1"
                     /translation="MSMSTSTEVIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARAR
                     SKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVE
                     AAIFIFVLLAGLVYLVRIGALDWTPARSRRERMNPETNSIANRQR"
     gene            complement(17046..17984)
                     /gene="lrhA"
                     /locus_tag="JN078_001886"
     CDS             complement(17046..17984)
                     /gene="lrhA"
                     /locus_tag="JN078_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LrhA"
                     /protein_id="HAY9041110.1"
                     /translation="MISANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQ
                     QMQRLEQLVGKELFARHGRNKLLTEHGIQLLGYARKILRFNDEACSSLMFSNLQGVLT
                     IGASDESADTILPFLLNRVSSVYPKLALDVRVKRNAYMAEMLESQEVDLMVTTHRPSA
                     FKALNLRTSPTHWYCAAEYVLQKGEPIPLVLLDDPSPFRDMVLATLNKADIPWRLAYV
                     ASTLPAVRAAVKAGLGVTARPVEMMSPDLRVLSGVDGLPPLPDTEYLLCYDPSSNNEL
                     AQVIYQAMESYHNPWQYSPMSAPEGDDSLLIERDIE"
     gene            18903..20120
                     /locus_tag="JN078_001887"
     CDS             18903..20120
                     /locus_tag="JN078_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HAY9041111.1"
                     /translation="MSPIEKSSKLENVCYDIRGPVLKEAKRLEEEGNKVLKLNIGNPA
                     PFGFDAPDEILVDVIRNLPTAQGYCDSKGLYSARKAIMQHYQARGMRDVTVEDIYIGN
                     GVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDD
                     IRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDA
                     EHHSIAPLAPDLLTITFNGLSKTYRVAGFRQGWMVLNGPKKHAKGYIEGLEMLASMRL
                     CANVPAQHAIQTALGGYQSISEFITPGGRLYEQRNRAWELINDIPGVSCVKPRGALYM
                     FPKIDAKRFNIHDDQKMVLDFLLQEKVLLVQGTAFNWPWPDHFRIVTLPRVDDIELSL
                     SKFARFLSGYHQL"
     gene            20204..20802
                     /gene="yfbR"
                     /locus_tag="JN078_001888"
                     /pseudo
     CDS             20204..20802
                     /gene="yfbR"
                     /locus_tag="JN078_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311202.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="5'-deoxynucleotidase"
     gene            complement(20861..22693)
                     /locus_tag="JN078_001889"
     CDS             complement(20861..22693)
                     /locus_tag="JN078_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HAY9041112.1"
                     /translation="MNGELIWVLSLLAVAIVLFATGRVRMDAVALFVIVAFALSGTLT
                     VPEVFSGFSDPNVVLIAALFIIGDGLVRTGVATVMGTWLVKVAGNSEIKMLVLLMLTV
                     AGLGAFMSSTGVVAIFIPVVLSVAMRMQTSPSRLMMPLSFAGLISGMMTLVATPPNLV
                     VNSELLREGYHGFSFFSVTPVGLVVLVLGILYMLVMRFMLKGDTQTPQREGWTRRTFR
                     DLIREYRLTGRARRLAIRPGSPMIGQRLDDLKLRERYGANVIGVERWRRFRRVIVNVN
                     GVSEFRARDVLLIDMSAADVDLRQFCSEQLLEPMVLRGEYFSDQALDVGMAEISLIPE
                     SELIGKSVREIGFRTRYGLNVVGLKRNGVALEGSLADEPLLLGDIILVVGNWKLIGML
                     AKQGRDFVALNLPEEVSEASPAHSQAPHAIFCLVLMVALMLTDEIPNPVAAIIACLLM
                     GKFRCIDAESAYKSIHWPSIILIVGMMPFAVALQKTGGVALAVKGLMDIGGGYGPHMM
                     LGCLFVLSAVIGLFISNTATAVLMAPIALAAAKTMGVSPYPFAMVVAMAASAAFMTPV
                     SSPVNTLVLGPGNYSFSDFVKLGVPFTIIVMAVCVVMIPMLFPF"
BASE COUNT         5846 a         6273 c         5694 g         4955 t
ORIGIN      
        1 tgtatagatc taacaaccgt aataaaacaa atactcataa ctcattataa ataatgataa
       61 aataacgtct tttattgata atttatatat gggaaaaatt ccttttgtta tattgtttct
      121 gatttcactc cctctgatta tttttaccaa ccctgggtca ctgcattacc accaacgccc
      181 cgacacgtca gtcctgagca attagaaaaa acagttcgtt atcttacaca aactgtgcat
      241 ccacgtaatg ccgacaatat tgataatctg aataggtccg tagagtatat aaaagagttc
      301 tttgtcagta gcggtgccag agttaccgcg cagggcgtcc ccgattggct attacgactc
      361 tgcgcctggt agccaggatt acctttaccc gcaatgtcct ggctttatcc cgatcggggg
      421 gactttattg cctggtcggc agaatacagg atatcaacgc cgttcgtcag gtaaaaacgg
      481 cattgttatc atcccgggat ttatctgttt attctatgaa tgccccatgg tttattcccg
      541 gtattgattt ctctgaccac ctgaattatt ggcaacacga tattcccgcc gtaatgatta
      601 ctgacaccgc tttttatcgt aataaacaat accacttgcc cggtgataca gcagacagat
      661 tgaattatca gaaaatggct cagatggtgt tataaccttg ttacacaaca gtaaataata
      721 aaaatttctc gaggcgggtc cagaaacagc gacatgtaca ttttattttc cctcgtctgt
      781 tttaagatgc gaaacataaa attcaatgga ggaaaaataa atgggaatga ttggttattt
      841 tgcagaaatt gactcagaaa agattaacca atctgcttga gtctactgaa aaacctttga
      901 tggataatat acatgacacg ctttcaggat tacgccgact ggatattgat aaacgctggg
      961 attttttaca cttttgggct gacaggcacc cctgcttttg atcccgcgaa gaatgatccg
     1021 ctgagtcgtg ccgtgcttgg tgaacacagc ctcgaagatg gcatagatgg cttcctggga
     1081 ttgacctgga atcaggaatt agccgcgaca atcgaccgac tggaatcact ggatcgaagt
     1141 aagctgcgta aacagttttc cattaagcga ctatgaaatg gagatttatc cgggagtgac
     1201 cttttcagaa gagttagagg ggcaactctt tgcctcgatc atgcttgata tggaaaagct
     1261 gattagcgcg tatcgacgta tgctgcgaca agggaatcat gcgctgacgg ttattgttgg
     1321 gtgatggtgt cagagcgcca aaaaaaaccg ccgaacatgt cggcggtttt ctgacttaca
     1381 aactaacaga ttacatcagc ggcattgcta accgcacaat actaatcagc gattgtggcc
     1441 atacacccag caccagtacc aacagtgcag aaatcagcac cacgataccg cccgcgctgt
     1501 actgccagtt tgacggtgca tcgcgacccg gttgttccgg tgcgtgcagg tacaggctca
     1561 ccgccacgcg caggtagtag tagaggccga ttgccgaacc gacaaccacg gcacccacca
     1621 gccaccacaa gtgtgcctgg acaccgaccg ccagcacgta gaacttaccg ataaagccca
     1681 gcgtcatcgg gataccggcc agagacagca tcatcaccgt catcactgcc gcgaggatcg
     1741 gacgatgcca gaacagaccg cggtaagaga acagggaatc agcatccggg ccacgatacg
     1801 ggctggacat caggctgacc acgccgaacg cgccgaggct gctgaacaga taaccggcca
     1861 ggtaaacccc taccgcttcc atcgacatct cgccggtttg cagcgcaatc agcgccacca
     1921 gcagatagcc gaggtgagag atagatgagt aaccgagcag acgtttgatg ttggtctggc
     1981 tcaacgccat caggttaccg aagatgatgg aggcaaaggc gataatcgcc agtactacgc
     2041 gaatcgcttc gctgtcaccc accggtgcat agaggaacag acgcatcacc acaccgaaga
     2101 tagcgatttt gctcgccgtc gccaggaaag tggaaaccgg cgcaggcgcg ccctggtata
     2161 cgtctggcgt ccacaggtgg aacggcacca gagagagttt gaagccgagg ccaacaatca
     2221 tcatgccgaa acctgccagc aacagcggct cgttgagcat accgtcgccg aggtttttac
     2281 ccagcgcgac aaacgacagg tcgccagact gcgcatacac cagcgccata ccaaacagca
     2341 ggaaagaaga cgctgcggca gaaaggatgg tgtatttgat actggcttcc agcgaacgtt
     2401 tctggcggaa agcgtaaccg accaggccaa acagcggcaa agagatcagt tcaataccga
     2461 ggaacagaga cgccagatgg tttgcattcg ccagcaggat cccgcccagc gcggcaatta
     2521 acaccaacag gtagaactca tccttgttgt cgttatagcc ttcaagccac gggtaggcga
     2581 aagtacaggt ggcgaggctc gccaacaata ccagcccggt gtaaagcatg gcgaaaccat
     2641 caacgcgcat cagcggcgta acgtccatag cgcccgcctg gccaacaaac cagagcgaaa
     2701 ccagcgccgc gttaagccca ataaccgaga gcgtagcgtt gaggaaatga ttgcgtcgcc
     2761 acgcaatgga gagcatcaca accaccaccg ttaagccgac gatcagcaac ggtagcagtg
     2821 cgatcaggtt ttgtggagtt attgtcatgg cgatttacgg ccttgtagta gtaacggaat
     2881 taacaaacca ctgctggata ttgccaatcg cggagtgcga ggtatccaga atcggctgcg
     2941 gatagaagcc cagcagtacc agcagcacca ccagcaacag gatcataaac agctcacgca
     3001 gcgacatccc tggcagttcc tggctggcaa tctggctttt cgctttaccg aagtaagcgc
     3061 gatgcaacat cgccagcgaa taaacagatg caaagaccag cccaaaggta gagataacgg
     3121 taatcaccgg gacaacctgg aagctgccga acagaatcat aaattcgccg acgaagttac
     3181 cggtgccagg catcccaagc gttgccaccg caaagaacag cgacaatgct ggcagccatt
     3241 tcatcttgct ccacagaccg cccatcatgc gcatgtcgcg ggtatggata cgttcataaa
     3301 gctgaccaca aagaataaac agacccgccg ccgacaaacc gtgcgcaatc atctggatta
     3361 ccgcgccctg gtaggccaac tggctgccgg tgtagatagc aatcagcacg aagcccatgt
     3421 gggaaaccga ggtgtaggcg atcagacgtt tgatatcggt ctgggcgaag gccatccacg
     3481 caccgtagaa gatgccgata acacccagcc acatagcaat tggcgcgaac tctgccgacg
     3541 cgttcgggaa cagcggcagg gagaaacgca gcaaaccgta agcggcagtt ttcagcaaga
     3601 tccccgcgag atcaacggaa ccggcggtcg gagcctggga gtgcgcatcc ggcagccagc
     3661 catgcagcgg aaccaccggc attttgactg cgaaggcgat gaagaagccc agcattaaca
     3721 ggtattccac accactggac attggcgtat tcagcagctc ttcatagttg aaggtccaga
     3781 cgccggtcgc attgtagtga acaaaaacca gcgccaggat ggcaatcaac atcaccaggc
     3841 cactcgcctg ggtgtaaatg aagaacttgg ttgccgccgt gatacgcgtt ttaccgtcag
     3901 aggctttatg cccccacagt gcgatcagga agtacatcgg caccagcatc atttcccaga
     3961 agaagaagaa caggaacatg tcgatggcaa ggaacacgcc gataacgccg cccaggatcc
     4021 acatcaggtt gaggtggaag aagccctgat atttttcgat ctctttccac gaacagagta
     4081 ccgccagcac accgagcaga ccggtcagca cgaccatcag cagcgacaga ccgtcaatgg
     4141 cgagatgaat agagatacca aaacgtggga tccacggcat gtcgaattca gactgccact
     4201 gcggaattcc ggcggattgc gtcagtgaat aaccgccctg caaccacagt tgcagcgaca
     4261 gcgccagcgt caatcccatg gtgatcagcg cgatccagcg tggcaccttg acgtcaaagt
     4321 gttcggtctg ccagcacagg aagccgccaa taaagggaat taatattagc cagggtagta
     4381 acatggcgat ctttattcct tgtaaaagtc ccgtcaggac cggattttca acgaattctc
     4441 acgacagaaa attctcttcg gactgggggt agtgtcggat gcgccgcgaa ggcagcttat
     4501 ccgacctacg ttcttatatg cccaggggca atcccacaat ccttaactca acgcagtacc
     4561 atcaacagtg ccagcaccac gaccgcaccg atgctcatgg atgccacata ccagcgcaga
     4621 taaccgttct cgcttaacag caggccttta cctgcaaagc gggaaagaac cgccggaatg
     4681 ttcatcattg agttcagcgg atcgcgtttc agcaaccagg caatacccag aaacggcttg
     4741 acgaacactt tgtcgtacag ccagtcaaag ccccaggcgt tgtaccacca ggtgcccagc
     4801 agacggcccg gcgcactgtt ggcaatggag gtcaccagag tacgtttacc ctgccacagc
     4861 caggctgcca gcagaatgcc gaccaccgcg accacgccag aggtaatttc cagggtcaac
     4921 atgctgccgt gcgccagttc cgtcgtttgc ggaagcacgc tctgcagcgg cggtacaatc
     4981 agtgcgccaa cgaaggtgga aaggatcagc agcacaatca gcggcaggct gtgagttacc
     5041 cctttcacgg cgtgagcgtg aatttgttct tttccgtgga agacgatgaa aatcatacgg
     5101 aaggtgtaga gcgaggtcat aaacgcaccg accagacctg ccaccatcag attgatatga
     5161 ccattcgcca tcgcacccgc gaggatctca tccttactga agaagcccgc agtgaccagc
     5221 ggtagtgccg acagtgctgc gccacccacc aggaagcaga aataaaccag cggaatagat
     5281 ttacgcagac cgcccatctt gaagatgttc tgttcgtgat ggcaggccag aatgacggaa
     5341 ccggatgcca ggaacagcag cgctttaaag aacgcgtgag tcatcaagtg gaaaatcgcc
     5401 gcatcccatg cctgcacgcc aagcgcgagg aacatgtagc caatctggct catggtagag
     5461 taagcgagaa cacgtttgat gtcggtctgt accagcgcgg caaaaccggc cagcagcagc
     5521 gtaaccgccc cgacaatgcc caccagatgc agaatttccg gcgtcatcag gaacaggccg
     5581 tgggtacggg cgatcaggta gacacccgcg gttaccatgg ttgcggcgtg gatcagcgcg
     5641 gagacaggcg tcgggcccgc catcgcgtcg gcaagccatg tctgcaacgg caactgcgca
     5701 gatttaccga ccgcaccgcc cagcagcatc agcgtcgccc acatcagcat gttattgccg
     5761 tcagcaaagt gcgctggtgc cagttccacc atttcgcgga agttcagggt gcccagttcg
     5821 ttgtaaagaa tgaacagcgc gaaagcgagg aacacgtcac ccacacgggt cacgacgaac
     5881 gctttcattg ccgctgcgcc attcttcgga tcggtgtaat agaacccgat cagcagatag
     5941 gagcacaggc ccacgccttc ccagccgagg tacatcagca gcaggttatc ggcgagaacc
     6001 agaactacca tgctggcgat gaacaggttg gtgtaggcga agaagcgaga gtagccctct
     6061 tcaccgcgca tgtaccagga ggcgtacatg tgaataagga aacccacacc agtgaccacc
     6121 gagagcatgg tcagcgacag gccgtccagc accaggttaa aaccgatgtt aaagtcgcct
     6181 accgacatcc acgtccacag cggctggctg tatgcctgct cgccgttagc gaagaaatca
     6241 acgccgataa aggcggttac cagcgccgcc aggcccacag agccaacgcc gacgatcgcc
     6301 gaaacgtttt cagaccagcg cccacgggag aacgccagca ggacgaagcc aatcaatggc
     6361 aaaataatgg ttaaggcaag catgttcatc cgcgcatctc acttactgaa tcgatgttca
     6421 ggttctggcg acgacggtga agttgcagca gcagcgcaag gccgatactc gcttctgccg
     6481 ccgcgaggct gatggcgaga atgtacatca cctgaccgtc ggtctgaccc cagtagcttc
     6541 cggcgaccac aaaggccagc gcggaggcgt taatcatgat ttccagacca atcagcataa
     6601 acagcagatt gcgacggata accagaccgg ttaagccaag aacgaataag attgccgaga
     6661 ggatcagtcc atgttgtaag gggatcatgc gtgctcctcc gtttttcttt tcgcgctgtc
     6721 gtctttacga ttgctcagca cttcacccgc acgctcttca cgaccgacgt ggaaggccac
     6781 aaccagaccc gcgagcagca gcatagaagc cagttccacc gccagtacgt aaggcccgaa
     6841 cagcgtaata cccactgctt tagcactgat tggcgtaccg tcgataccct gatcattaac
     6901 accaaggatg gcgtaaacaa tcaccaccag catgatggcc gacaaaattg ccggaccaat
     6961 ccacacctgc ggtttcagcc actggcgttc ctgttcgatt tctgaaccgc ccaggttgag
     7021 catcatcacc acgaacacga acagcaccat aatggcaccc gcgtagacga taatttccag
     7081 cgcaccggcg aagtaagcgc ccagtgagaa gaacaccccg gaaatcgcca gcagcgaaat
     7141 aatcaggtac agcagtgcgt gtaccggatt ggtatgggtg atcactcgca aggtcgcaag
     7201 tatggctatc aggccacaga tataaaaagc gaactccatt gcccctctcc ttacggtaac
     7261 aggctcttga cgtcgatagg cttggcttcg ttctctgctt cgcccttatc tttgccgtcg
     7321 attgccatac ctgccatccg gtagaagtta tattccgggt atttgcccgg accggagatc
     7381 agcagatcct ctttttcgta aaccagatcc tggcgcttgt attcccccat ttcgaaatcc
     7441 ggggttaact gaatcgccgt ggtcggacag gcttcttcgc acagaccaca gaaaatgcag
     7501 cgtgagaagt tgatgcggaa aaattccggg taccagcgac cgtctttggt ttctgctttt
     7561 tgcagcgaga tacagccgac cgggcaggct accgcgcaga ggttacaggc tacgcaacgc
     7621 tcttcgccgt ccgggtcgcg ggtcagaacg atacgaccac gataacgggg cggcagatag
     7681 accggctctt ccgggtacat tcgcgtttcg cgtttggcga acgcgtgcag gccgatcatc
     7741 cagatactac gaacctgggt gccgaaacct actaacaatt cttttaaggt catggtctta
     7801 ttgcccctta ttgcgcctgc cagagaatga cagccgccgt taccagcaag ttgatcagcg
     7861 tcagcggcag gcagattttc cagccgaagg acattacctg gtcataacgc ggacgcggta
     7921 acgacgcacg aatcaaaatg aacatcatca taaagaacgc ggttttcaac gcgaaccaga
     7981 tgaatggcgg taacaacggg ccttgccagc caccgaagaa cagcgtcaca atcaatgcag
     8041 agatggtcac aatcccgatg tactcaccca cgaagaacag accgaacttc ataccggaat
     8101 attcaatgtg gtaaccatcc gccagttcct gctcggcttc cggctggtca aacgggtgac
     8161 ggtgacatac cgccacgccc gcgatggcaa aggtaataaa accaaagaat tgcgggataa
     8221 cgttccacac atgcgcctgg ctgttgacga tgtcggtcat gttgaatgaa ccggcctgcg
     8281 ccaccacgcc catcagggaa agcccgagga acacttcgta gctcagggtc tgcgcagaag
     8341 cacgcatcgc acccagcaac gagtatttgt tgttacttga ccagcccgca aacagcaccg
     8401 cgtaaaccgc cagacctgcc atcatcagga agaacaaaat cccgatgttc aggtcggcaa
     8461 ccacccaacc cggactgact ggcacaatcg caaaggccag cagcagcgag gtaaaggcaa
     8521 tcatcggtgc cagggtaaag atgacgcgat ccgagaattt cgggatccag tcttctttaa
     8581 agaacatttt gatcatgtcc gcaaccagct ggagcgaacc gccccagcca acacggttag
     8641 gtccataacg gttctggaac agacccagca ggcgacgttc gccaaagctc atgaatgccc
     8701 cacaggtgac aaccaccagc aggatcacca ccgctttgag gatggtcagc aggatctcaa
     8761 tcagttccgg tgatatccaa ctcattgttg tgcctccttg agatcctcaa gatgcgcgcc
     8821 agccagcacc ggagcaatgc cggacatacc catcggcaag cccacctgcc ctgccgtcag
     8881 tccttcggcg atttcaaccg gcagcgtgac cgtgttgcca tcgtaactaa aggagacgcg
     8941 tgtacctgcg ttcacaccca acttcgcggc atccgctggg ttgagtttga tgtacggctg
     9001 cggcatacgg ctctggaaga ccggagcacg ctgtgacaat tcatcgctgc caaacaggtg
     9061 gtaatacggc gcaatacgcc atttcccgtc ctgcggctgg aagcgtgccg gtacgctggt
     9121 gaagtaatcc agaccattct cgctggtttc aaacagacgc acgcccggat cgccaaagcg
     9181 cagtttgccg cccacttcgt cctggaattt gttccacgcc tgcggggagt tccagcccgg
     9241 tgcccaggca aacggcactt gcgaacggtg cgcggtcggc tggttgttac cttccatcga
     9301 gaaggtgaac atggtgtcaa tatcctgcgg ctgacgcggc tcatgaacgc tgatattggc
     9361 gcgcatggcg gtacgaccgc tgtaacggtg cggttcacgg gccagtttct gcccacgaat
     9421 acggaatgtc gcatccggcg cagcatcttt gatacctgcc agttccggga ttttcgccac
     9481 aacagcgtca atcacatggt cgagctgcgt ccagtccact tcacggctca gcagggtgct
     9541 gtgcagcgag tgcagccagc gccagctttc cagcatgaca gttttgctgt cgtaataagc
     9601 cggatcgtaa acctggaaga aacgttgggc gcgaccttca ttattaatta ccgtaccgtc
     9661 gctttcagca aagctggcgg cggaaagtac cagatgggcg ttttccatga tcgctgtacg
     9721 ctgatggtca accaccatca ccagcggtgc tttagccagc gcagcattca cgcgggtagc
     9781 agaagcgtga cgatgcagat cgttttccaa caccaccacc gcgtcggcgc gtccggtttc
     9841 cagttcggtt aacgcttctt caagcgaacc gccacccata atgcccagcc ccatgctgtt
     9901 gacggaacgg gcaatcatgg tgataccgac gtcagcgccg cgacctttca gggctttcgc
     9961 gacgttagcc gccgcctgaa tcacctctaa gctaccggcg ttcgtcccgg agataatcaa
    10021 cggtttcttc gcacctgcca gtgcctgcac gatgacgtcg attttgcttt gcagctcagg
    10081 ttcgataccg tcaaccgctg gtgcagagtt atccagcgca tgggcgatgg caaaacctaa
    10141 acgcgcctga tcttcaaccg gtgcgcggta agtccacgcc gcgatatcat ccaaacgggt
    10201 gtcatcaacg ttggtaacaa acagcggatg cttcgcacgt tgaccgatgt taaggattgc
    10261 cgcaatctgc cagtcagcca ctttctgtgc tgccgccatt tcgcgcgctt tacctttcac
    10321 cgcctgacgc actgccagcg cgacgcgcgc gccggtctgg gtaacgtctt cgcccagcac
    10381 cagtaccgca tcgtaagatt cgatttcgcg cagagccgga gtataaatgc cgccttcacg
    10441 cagcactttc agcgccagtt gcagacgttc ctgctcaccg tgagcgatac cggtgtagaa
    10501 gttttcttcg cccaccagtt cacgcagtgc aaagttgctt tccacgctgg cacgcggaga
    10561 accaataccg atcactttct tcgactgacg cagaatatct gccgcgccct gcattgcctg
    10621 ttcggcgttg agggtaatga aatcatcgcc acgacgctgt actggctgac gcggacgatc
    10681 cttcaggttg acgtaaccgt aaccgaaacg accacggtcg cagaggaagt agtggtttac
    10741 cgtaccgttg taacggtttt cgatacgacg cagttcgccg taacgttcac cggggctgat
    10801 gttacagccg atggaacatt gctggcagat gctcggcgca aactgcatat cccatttacg
    10861 gttgtaacgc tcggagtgcg ttttgtcggt aaatacgccg gtcgggcaaa tttcgaccag
    10921 gttaccggaa aattcgcttt ccagcgtgcc gtcttccggg cgaccgaagt agacgttgtc
    10981 gtgcgcgcca taaacgccca gatctgtacc gtcagcgtaa tctttgtagt aacgcacaca
    11041 gcggtagcag gcgatgcagc ggttcatttc gtgagatatg aatggcccca aatcctgatt
    11101 acggtgggta cgtttggtga aacggtagcg acggaagctg tgtccggtca tcacggtcat
    11161 atcctgaaga tggcagttac cgccttcttc acataccgga cagtcgtgcg ggtggttggt
    11221 cattaaccac tcgaccacac tttcacggaa ctgtttcgct tcttcgtcgt caatggaaat
    11281 aaaggtgcca tcggaagccg gtgtcataca ggacatcacc aggcgaccac gcgtgtcttc
    11341 cgcgttttgg tattgcttca ccgcacactg gcggcaagca ccgacgcttc ccagcgccgg
    11401 atgccagcaa aagtaaggaa tatcaaggcc cagagacaga caagcttcca gcaggttgtc
    11461 cgctccgttg acctcgtatt ctttgccgtc tacatgaatt gtagccatta gcatgcttcc
    11521 agttttctcg gtcagggacc gagcgttaat cgaaattcgg ttaccagcgc tctttcagca
    11581 ggttcggctg aatcccatta atcaaatggg tattgctgaa cggctgtttg attcccgcct
    11641 caaattcttc gcggaaatat ttgatggcgc tctgtaacgg ctccactgca ccaggtgcgt
    11701 gggcacagaa agttttaccc gggcctaaga atcgacacag ttgctcaagt gtttcaatat
    11761 cgcccggctg gccttcgcca cgctccagcg cacgcagaat tttcacgctc cacggcagac
    11821 cgtcgcggca cggcgtacac cagccgcagg actcacgggc gaaaaactct tccaggttac
    11881 gcaccagcga caccatgttg atctcatggt caaccgccat cgccagcgcc gtacccagac
    11941 ggctgcccgc tttaccgata ctttcgaatt ccatcggcag atcaaggtgc gcttcggtca
    12001 ggaagtcagt ccccgcgccg cctggctgcc aggctttaaa tttcagacca tcacgcatac
    12061 caccggcgta atcttcgagg atctcgcgtg cggtggtgcc gaacggcagt tcccacagtc
    12121 ccggattttt cacccgaccg gagaagccca tcagcttggt gccagcatct ttacttttcg
    12181 agatgttctg ataccactcc acgccgttag cgaggatcgc cggaacgtta cacagggttt
    12241 cgacgttgtt gacacaggtc ggtttgcccc atacgccgga ggttgccggg aaggggggtt
    12301 tcgagcgtgg gttagcacga cgcccttcta gggagttgat taacgctgtt tcttccccgc
    12361 agatgtagcg ccctgccccg gtatggacga acagttcgaa gtcgaaacct gttcccataa
    12421 tgtttttgcc aagcaagccc gcttcagtgg cttcggcaat ggcgcggcgc agatttactg
    12481 ccgcttcgat atattcgcca cgcaggaaga tgtagccacg gtaagctttc agcgcaaacg
    12541 cggagatgag cataccttcc accagcaggt gcggcagttg ctccatcaac aggcggtctt
    12601 tataggtgcc cggctccatt tcatcggcgt tacacagcag gtaacggatg ttcatggatt
    12661 cgtctttcgg catcaggctc cacttcaggc cagtagaaaa gcccgctccg ccgcgccctt
    12721 tcagaccagc gtcttttacc tgattaacga tttcgtccgg agacagcccg gtcagcgcct
    12781 tacgcgcccc ttcgtaaccg tttttgctgc ggtattcgtc cagccacact ggctgtttgt
    12841 catcgcgcag acgccaggtc agcggatgcg tttcgggagt acggataatg tttttcattt
    12901 ataccgctcc agcagttcag ggatcgcttc cggggtcaga tgcgcgtgag tgtcctcatc
    12961 gatcatcatg tttggccctt tatcacagtt ccccaggcag caagttggca gcagcgtaaa
    13021 gcggccatca aatgtcgttt gccctggttt gatgttcagc tttttctcga gcgccgcctg
    13081 aataccctga tacccgttga tatgacagac cacgctgtcg caataacgga tcacatggcg
    13141 accaaccggc tggcggaaga tctgactgta gaacgttgcc acaccttcga cgtcgcttgc
    13201 cggaataccc agcacatcgg cgatcgcgtg gatcgcacca tccggcaccc agccacgctg
    13261 cttctgaacg attttcagcg cttcaatgga cgccgcacgc gggtcttcgt agtggtgcat
    13321 ctcgtgctca atcgcttcac gctctgccgc actcagctca aaagcctcgg tttgtggttg
    13381 ttgattctcg tgcataatta gcggtccaca tctgacataa caaaatcgat actgcccaga
    13441 taaacaatca ggtcagacac caggctgccg cggatcgccg ccggaatttg ctgcaaatgc
    13501 gcataactcg gcgtgcggat acgagtgcga taactcatgg tgctaccgtc gctggtcagg
    13561 tagtaactgt tgatcccctt ggtcgcctca atcatctgga aagattcatt ggcaggcatc
    13621 accggccccc acgacacttg caggaagtgg gtgatcaggg tttcgatatg ttgcagcgtg
    13681 cgctctttcg gcggcggcgt ggtcagcggg tgatccgctt tgaacgggcc ttccggcatg
    13741 ttgttgaggc actgctcaag aatgcgcaga ctctggcgca gctcttccac tttcagcatt
    13801 acgcgggtgt agcagtcaga aacaccacca ccaaccggga tttcaaagtc gaagttttca
    13861 tagccagaat aaggacgcgc cttacgcacg tcgaagtcga tcccggtagc acgcaggccc
    13921 gcgccagtgg tgccccactc cagcgcctct ttcgcgccat aggcggcaac gccctgggaa
    13981 cgacctttca gaatggtatt ttgcagcgcc gctttctcgt aagacgccag acgtttcggc
    14041 atccagtcga ggaactcacg cagcaggcga tcccagccgc gcggcaggtc gtgcgctacg
    14101 ccgccaatac ggaaccacgc cgggtgcata cggaaacccg tgatcgcttc caccagatcg
    14161 taaattttct gacgatcggt aaaggcgaag aacacgggcg tcattgcgcc gacgtcctga
    14221 ataaaggtcg agatgtacag caggtggctg ttgatacgga acagttcgga gagcataacg
    14281 cgaatgacgt taacgcgatc cggcacggtg atcccggcca gtttctctac cgccagcacg
    14341 taaggcattt cgttaacgca gccgccgagg tattcaatac ggtcggtata cggaatgtag
    14401 ctgtgccagg actggcgctc gcccattttc tccgcaccac ggtggtggta gccgatgtct
    14461 ggtacgcagt cgacaatctc ttcgccgtcg agttgtaaaa cgatacggaa agccccgtgc
    14521 gccgacgggt ggttcggacc gaggttgagg aacatgaagt cctcgttttc ggtgccgcgc
    14581 ttcatccccc actcttccgg tttgaaggtc agggcttcca tctccagatc ctgtttggct
    14641 ttggtcagct caaacggcga gaattcggta gcgcgcgccg ggtaatcttt acgcagcggg
    14701 tgacctttcc aggtttgcgg catcatgatg cggcgcaggt tcgggtgacc gtcgaaagta
    14761 atgccaaaca gatcccaggt ttcacgctca taccagttag cgttcgggaa cagtttggtg
    14821 aaggtcggta cgtgcaggtc gttttctgcc agcgccacct tcagcatgat gtcgcggtta
    14881 cgatcgatag aaatcagatg gtagaaaacg gaaaaatccg cggcaggtaa cccttcgcgg
    14941 tgtgtgcgca gacgttcgtc catgccgtgt aagtcaaaca gcatgacgta aggtttcggc
    15001 agtttcttta agaaatcgcc aacttccagt aattgttcac gcttgatcca cacaacggga
    15061 accccggtgc gagtcgcctg aacagtaaag gcatccggcc caaaacggtt gcgcagttcg
    15121 ccaattaccg gatcatcaag atgatcgcgg gtctgccagg cgggttcttg cgcggttaag
    15181 tcggtcatat tgttcaccat tgcaaatggt ccgtggtgac tgtcggcgca gtaagcttcg
    15241 cgaaatagat ttaggaataa gcgaagaaaa atccctttgc cgacaggcgc aaattaaatc
    15301 tcgtcaggtg tacgcaggtt ggttacggca atgcgttcac cgcgcttgcg ttcgcgctct
    15361 gattgcatat tggcgcgata aacgccctga tcgccaacca cccaggagag cggacgacgt
    15421 tctttgccga tagattcctg caacagcatc agtgcctgca tgtacgcttc aggacgcggc
    15481 gggcagcccg ggatatacac atcaaccggg atgaatttat cgacgccctg cacaacggaa
    15541 taaatatcgt acataccacc agagttggca caggcaccca ttgagataac ccattttggt
    15601 tccagcatct ggtcatacag acgctgaata accggtgcca ttttggtaaa gcaggttcct
    15661 gcaaccacca tcaggtcagc ctgacgcggc gaagcacgca atacttctgc gccaaaacgc
    15721 gccacgtcat gcaccgcggt aaacgaagtc accatctcaa cgtaacagca ggaaagaccg
    15781 aagttatacg gccaaattga gtttttacga ccccagttaa ccatgtcatt gagcttgccc
    15841 ataaacacgt ttttgttaac ttcttgctcc agagggtcgg ttacgatctc ctgcttttgc
    15901 agggggtaac ggtcgttctc accgttggga tctatgcggg tgagcgtata atccatctta
    15961 atgcctcgcg gttagcgttg acgattagcg atactgttcg tttccgggtt catacgctcg
    16021 cggcgtgaac gcgcgggcgt ccagtccagc gcgccaatac gcaccagata aaccagacct
    16081 gccagtaaca caaaaataaa aattgcagct tccacaaagc ctacccagcc gctttcgcgg
    16141 atagaggttg accatgcgaa cagatacagc gcttcaacgt cgaagataac gaagaacatg
    16201 gccaccagat aaaacttggc ggacaggcgt aagcgggcgg agccgaccga gtcgataccg
    16261 gattcaaacg gcacgttttt cgacctcgcg cgtgcgcgac cgcctaaaaa ccaaccacct
    16321 accagcatta ggcaacacag gccaatggca acgataagaa agatagcgaa tgcccagtga
    16381 tgagcgatga cttcagtgga tgttgacata ctcattgctt actcatcaaa agtagcgcca
    16441 gattcactgc tcttcacggc agatggacgc cacatcgatt catggggagg aataaaaaaa
    16501 accttacaat cactgtagaa attcttttat acagctaatt gatgtggtct tttactcctt
    16561 tctataacct tttgtcaact ttaacaaaag tttcttcaca ttagtttaca taatatcaac
    16621 accattagca tttaatgccc tttcacccca gatccttgac gactccagga taattagatg
    16681 ttgttgaatc gtgtccgttg tgaagcaatg gaaaaaatac gggtctattt tgacaggaat
    16741 ttgtgtcgat tcctcccccc aaaagagagt attttcttga tctgtgacac gcttttgtca
    16801 ttccataaca aaaacgcagc aacaaattta cgtatttttt aacatcattg tagcaggtga
    16861 tttttttcag gcgattattt gtgcgttcgg gacgtgaatc tctggtgatt gaaaaatgaa
    16921 cagttttgta cgttctgcac tatgcgagga aggattttta ctaaaaaaaa gccgctgggg
    16981 tttaaaacac ccccagcggc tcgtttttta cactattgtc tcaggaatta tctatcgtcc
    17041 gtcgattact cgatatccct ttcaatcaac aatgaatcat ccccttccgg agcagacatt
    17101 gggctgtatt gccacggatt atggtagctc tccatcgcct gatagatcac ctgggccagc
    17161 tcattattac tggacgggtc atagcacagc aaatattcgg tatcaggtag cggcggtaag
    17221 ccatctactc cactcagcac acgcaggtcc gggctcatca tctcaaccgg ccttgccgtc
    17281 acgccaagac cggctttcac tgccgcacga acggccggaa gcgtcgaggc gacataagcc
    17341 agtcgccatg gaatatctgc tttattaagc gttgccagca ccatatcgcg aaacggactt
    17401 ggatcatcca gcaatacaag agggatcggc tcgccttttt gcaatacgta ttccgctgcg
    17461 cagtaccagt gtgttggcga ggtacgcagg ttcaatgcct taaacgctga aggacgatgg
    17521 gtggttacca tcaaatccac ttcctgggat tccagcattt ctgccatata ggcattacgt
    17581 ttaacgcgga catccagcgc taatttcgga taaaccgaac tcacgcgatt taacaggaaa
    17641 ggtaagatcg tatcggcaga ttcatctgaa gcaccgatag ttaacacgcc ctgaagatta
    17701 ctgaacatta atgatgagca ggcctcatca ttaaaacgca ggattttcct ggcgtaacca
    17761 agaagttgaa tgccatgttc agttaacagt ttgttgcgac cgtgacgagc gaacagttct
    17821 ttcccaacga gttgttccag acgctgcatt tgctgactta cggcggactg agtacgacac
    17881 acagcggcag ctgcggcagc aaaagtgttc agatcggcaa cagcaacaaa tgttctcagc
    17941 agatcgaggt cgaggttaat tatcggacga tttgcactta tcatatatta tcacttactg
    18001 gcggctcata ctgagctggt taatgctgtg cacacacaaa caagcaattc catttgtaat
    18061 gtgcctccct ggcagtttca tccggaaccc ggacgaaagt aaaaatgcat atgagttgca
    18121 ctaaaaaagc gactcacatt gttccgttat aatgcctgaa gtagatcaca gaatatatct
    18181 tcagggatcg catatctatt aagttactca ctcttttcta tttatgacat gcgcgtgttt
    18241 gtataaatgt aaatgtgagt ccttgttcca ctctcgtgca gcatcgctgg tcatacgcga
    18301 acacgtacaa acagcaatgg tgaggcggca tcaagagcag ggatccgtca tttatgcgag
    18361 cattttaccc caaaaacctt ttatttataa gggccattgc gaatcatctg atgcaaagtt
    18421 atgttatgtt aggcaaagta atcttctatt attaataagc acatcaaaac ctttttgaat
    18481 attaaataat aattaattag catcatcctc attcattaat tccgcttaac aatagtttca
    18541 caccttgccc cattacgaca cctcggaaat catcacgctg ttaaactctc cgtaatgcgg
    18601 aaatatcatc atcgcgtttc attagtgaat tcttaaatga ggcattttca cacaattatc
    18661 ttacagataa aaaaaccaga cttacaatta agaatcagaa caattcacta tataacattg
    18721 catgtaaagc atatacacct cattattttg tcatcattaa gttattaaca gcacaatcga
    18781 gccttcccct ctggcaaaat cttattctgc agaccttcaa aacaccgtcc tgggggagta
    18841 cattgttcta agctgacttc cacggcaggg agtggcgata acagcaaaaa aggtcaagat
    18901 tcatgtcccc cattgaaaaa tccagcaaat tagagaatgt ctgttatgac atccgtggtc
    18961 cggtgctgaa agaagcaaaa cgcctggaag aagaaggtaa caaggtactg aaactgaaca
    19021 tcggcaaccc agccccgttc ggttttgacg cgccagatga aatcctcgtt gacgtgatac
    19081 gcaacctgcc taccgctcaa gggtattgcg attccaaagg tctttactcc gcgcgtaaag
    19141 ccatcatgca gcactaccag gctcgtggca tgcgtgatgt taccgtggaa gatatttaca
    19201 tcggcaatgg tgtatcggag cttatcgttc aggcaatgca ggcattgctg aacagcgggg
    19261 acgaaatgtt ggttcctgca ccagattacc cactatggac cgcggcggtt tcgctttcca
    19321 gcggtaaagc ggtgcattat ctttgcgatg aatcctctga ctggttcccg gacctcgatg
    19381 atattcgcgc taaaattacg cctcgtacgc gtgggatcgt tattatcaac ccaaataacc
    19441 caaccggcgc ggtatattcc aaagagcttt taatggagat tgtggagatt gcacgtcagc
    19501 ataatctcat tatcttcgcc gatgaaattt atgacaaaat tctttacgac gacgctgagc
    19561 atcactcaat tgcgccgctg gcacctgacc tgctgaccat tacctttaac ggactgtcga
    19621 aaacgtaccg cgttgcaggc ttccgtcagg ggtggatggt gttgaacggg ccgaaaaaac
    19681 acgccaaagg ctacatcgaa ggtctggaaa tgctggcttc aatgcgcctg tgtgctaacg
    19741 ttcctgcgca acacgccatt cagaccgcgc tgggtggtta tcagagcatc agtgaattta
    19801 ttacccctgg cggtcgtctt tatgagcagc gtaaccgcgc gtgggaactg atcaacgata
    19861 ttccgggcgt ttcctgcgtg aaacctcgtg gtgcgctgta tatgttcccg aaaatcgacg
    19921 ccaaacgctt taacattcac gacgatcaga aaatggtgct ggatttcctg ttgcaggaaa
    19981 aagttctgtt ggtgcaaggg acggcattca actggccgtg gccggatcac ttccgcattg
    20041 tcacgctacc gcgtgtcgat gatatcgagc tgtctttgag caagttcgcg cgtttccttt
    20101 ctggttatca tcagctgtaa tcttaatttc actgccggag attgcatccg gcagcgttat
    20161 cccgccacaa tgacctgatg atgtcatcat acgtaaggtc actatgaaac agagccattt
    20221 ttttgcccat ctctcccgcc tgaaactcat taaccgctgg ccgctaatgc gcaacgtgct
    20281 gacggaaaat gtgtccgaac acagtttgca ggtagcgatg gtcgcccatt cgctggcagc
    20341 tatcaaaaat cgaaaatttg gcggtaatgt caacgccgaa cgtatcgctt tactggcgat
    20401 gtaccacgat gcctcagaag tgccaccggc gatctcccta ctccggtgaa atacttcaat
    20461 tcgcaaatcg ctcaggagta caaggctatt gaaaaaatcg ctcagcaaaa actggtcgat
    20521 atggttccgg aagagctgcg ggatatcttt gcgccgttaa ttgacgagca tgcatatagc
    20581 gatgaagaaa aatcgctggt gaaacaggca gatgcactgt gtgcatatct gaaatgtctg
    20641 gaagaactcg cggccggaaa taatgaattc ttgctggcaa aaacgcgact ggaagcgacg
    20701 cttgaagcgc gtcgcagcca ggagatggac tacttcatgg aagtatttgt tcccagcttc
    20761 catctttcgc tcgatgagat tagccaggat tcaccgctgt aagcagccgg agtctgcgtc
    20821 gcatcaggca ataagcgccg gatgcgacat caggctcttg tcaaaacgga aacagcatcg
    20881 ggatcatcac cacacaaacc gccatcacga taatggtgaa cggtaccccc aacttcacaa
    20941 agtcactgaa gctgtaattt cccggaccta aaaccagtgt gttaacaggt gaagaaaccg
    21001 gtgtcataaa ggcggcggat gctgccatcg ccacgaccat cgcgaatgga taaggcgaca
    21061 cccccatcgt tttggcagca gccagcgcaa tcggagccat caacaccgcc gtcgcggtat
    21121 tagagataaa tagcccaata accgccgaca agacaaacaa acaccccagc atcatatgtg
    21181 gcccgtaacc accgccaatg tccatcagcc ctttcaccgc cagcgcgaca cctcccgttt
    21241 tctgtaatgc cacagcaaac ggcatcatcc caacgatcaa aataatgctc ggccagtgaa
    21301 tggatttata ggcgctttca gcatctatac agcggaattt ccccatcagc aggcaggcga
    21361 tgatagcggc aacaggatta ggaatttcat ctgtcagcat taacgccacc attagcacca
    21421 gacagaaaat ggcatggggt gcctggctgt gcgcgggcga tgcttcactc acctcttccg
    21481 gtaagttcag cgctacaaag tcgcggccct gtttggccag cataccgatc agtttccagt
    21541 tacccacaac caggatgata tcgcccagca gcagaggctc atccgccagc gaaccttcca
    21601 gcgccacgcc attgcgcttt agccccacca cattcagtcc gtagcgggta cgaaaaccaa
    21661 tttcgcgcac cgatttacca atcagttctg actcaggaat taatgaaatc tctgccatgc
    21721 ccacatcaag ggcctggtca gaaaaatact cgccgcgcag taccatcggc tccagcaatt
    21781 gctcactaca aaattgccgg agatcgacat cagccgcaga catatcaata agcaaaacgt
    21841 cacgcgcgcg aaattcagaa accccattaa cgttcacgat aacgcgacga aaacgccgcc
    21901 agcgttcaac accgatgacg ttagcgccat aacgctcacg taatttgaga tcatccagcc
    21961 gttgaccaat cattggcgat ccggggcgaa tagccagacg tcgcgcacgc ccggtcagtc
    22021 gatattcacg gataagatcg cgaaaggttc gacgcgtcca gccttcgcgc tgcggggtct
    22081 gggtatcccc tttcagcatg aaacgcatca ctaacatata caaaataccc agcaccagca
    22141 cgaccaggcc aacaggtgtt acgctaaaga aactgaagcc gtgatagcct tcacgcagca
    22201 attcactgtt gactaccagg ttcggcggcg tcgccaccag cgtcatcatg ccgctaatca
    22261 gcccggcaaa acttaacggc atcatcagac gtgacggcga agtttgcata cgcatggcaa
    22321 cgcttaacac cacgggaata aagatagcga caacgccggt tgaactcata aacgcgccaa
    22381 gccccgcgac ggtcagcatc aacaaaacca acattttgat ttcactgttg cccgccactt
    22441 tgaccagcca tgttcccatt acggtggcaa caccggtacg gaccaaacca tcgccaataa
    22501 taaacaaggc ggcaatcagg acaacgttag gatcagaaaa gccggaaaat acttcgggga
    22561 ccgtcagcgt tccgcttaat gcaaacgcga caataacaaa caaagcgacc gcatccatac
    22621 gcactctgcc cgtcgcaaac aagacgatgg caacggccag taatgaaaga acccaaatca
    22681 attcaccgtt cacaacttat ccttgttaat tgagggggat gacttgattc tgccataaaa
    22741 aagccccgac gagacggggc taaatcat
//
LOCUS       DADMJB010000055        22588 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.055, whole genome shotgun sequence.
ACCESSION   DADMJB010000055 DADMJB010000000
VERSION     DADMJB010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22588)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22588)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22588
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.055"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..257)
                     /locus_tag="JN078_001890"
     CDS             complement(<1..257)
                     /locus_tag="JN078_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent protein"
                     /protein_id="HAY9041113.1"
                     /translation="MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRK
                     LALEDEIWLRVFTVAKHLQRAGYCHGICTGEGLEIVGQGDC"
     gene            complement(248..718)
                     /locus_tag="JN078_001891"
     CDS             complement(248..718)
                     /locus_tag="JN078_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent protein"
                     /protein_id="HAY9041114.1"
                     /translation="MKTQRGYTLIETLVAMLILVMLSASGLYGWQYWQQSQRLWQTAS
                     QARDYLLYLREDANWHNRDHSISVIREGTLWCLVSSAAGANTCHGSSPLVFVPRWPEV
                     EMSDLTPSLAFFGLRNTAWAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL"
     gene            complement(903..1697)
                     /gene="thyA"
                     /locus_tag="JN078_001892"
     CDS             complement(903..1697)
                     /gene="thyA"
                     /locus_tag="JN078_001892"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HAY9041115.1"
                     /translation="MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPL
                     VTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWP
                     TPDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS
                     CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHL
                     QLSREPRPLPKLIIKRKPESIFDYRFEDFEIEGYAPHPGIKAPVAI"
     gene            complement(1704..2579)
                     /gene="lgt"
                     /locus_tag="JN078_001893"
     CDS             complement(1704..2579)
                     /gene="lgt"
                     /locus_tag="JN078_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HAY9041116.1"
                     /translation="MTSSYLHFPEFDPVIFSIGPVALHWYGLMYLVGFIFAMWLATRR
                     ANRPGSGWTKNEVENLLYAGFLGVFLGGRIGYVLFYNFPQFMADPLYLFRVWDGGMSF
                     HGGLIGVIVVMIIFARRTKRSFFQVSDFIAPLIPFGLGAGRLGNFINGELWGRVDPNF
                     PFAMLFPGSRTEDILLLQTNPQWQSIFDTYGVLPRHPSQLYELLLEGVVLFIILNLYI
                     RKPRPMGAVSGLFLIGYGAFRIIVEFFRQPDAQFTGAWVQYISMGQILSIPMIVAGVI
                     MMVWAYRRSPQQHVS"
     gene            complement(2730..4976)
                     /gene="ptsP"
                     /locus_tag="JN078_001894"
     CDS             complement(2730..4976)
                     /gene="ptsP"
                     /locus_tag="JN078_001894"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HAY9041117.1"
                     /translation="MLTRLREIVEKVASAPRLNEALNILVTDICLAMDTEVCSVYLAD
                     HDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRLAEPINLADAQKHPSFKYIPSV
                     KEERFRAFLGVPIIQRRQLLGVLVVQQRELRQYDESEESFLVTLATQMAAILSQSQLT
                     ALFGQYRQTRIRALPAAPGVAIAEGWQDATLPLMEQVYQASTLDPALERERLTGALEE
                     AANEFRRYSKRFAAGAQKETAAIFDLYSHLLSDTRLRRELFAEVDKGSVAEWAVKTVI
                     EKFAEQFAALSDNYLKERAGDLRALGQRLLFHLDDANQGPNAWPERFILVADELSATT
                     LAELPQDRLVGVVVRDGAANSHAAIMVRALGLPTVMGADIQPSVLHRRTLIVDGYRGE
                     LLVDPEPILLQEYQRLISEEIELSRLAEDDVNLPAQLKSGERIKVMLNAGLSPEHEEK
                     LGSRIDGIGLYRTEIPFMLQSGFPSEEEQVAQYQGMLQMFNDKPVTLRTLDVGADKQL
                     PYMPISEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATGNLNILLPMVTSLDEVD
                     EARRLIERAGREVEEMIGYEIPKPRIGIMLEVPSMVFMLPHLAKRVDFISVGTNDLTQ
                     YILAVDRNNTRVANIYDSLHPAMLRALAMIAREAEIHGIDLRLCGEMAGDPMCVAILI
                     GLGYRHLSMNGRSVARVKYLLRRIDFAEAENLAQRSLEAQLATEVRHQVAAFMERRGM
                     GGLIRGGL"
     gene            complement(4989..5519)
                     /gene="rppH"
                     /locus_tag="JN078_001895"
     CDS             complement(4989..5519)
                     /gene="rppH"
                     /locus_tag="JN078_001895"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001655775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HAY9041118.1"
                     /translation="MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGE
                     SAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLL
                     QLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMSLQE
                     NTPKPQNTSAYRRKRG"
     gene            6204..6893
                     /gene="mutH"
                     /locus_tag="JN078_001896"
     CDS             6204..6893
                     /gene="mutH"
                     /locus_tag="JN078_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutH"
                     /protein_id="HAY9041119.1"
                     /translation="MSQPRPLLSPPETEEQLLAQAQQLSGYTLGELAALAGLVTPENL
                     KRDKGWIGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVAPLTG
                     NSGVTWETSHVRHKLKRVLWIPVEGERSIPLAQRRVGSPLLWTPNEEEDRQLREDWEE
                     LMDMIVLGQVERITARHGEYLQIRPKAANAKALTEAIGARGERILTLPRGFYLKKNFT
                     SALLARHFLIQ"
     gene            6962..7675
                     /locus_tag="JN078_001897"
     CDS             6962..7675
                     /locus_tag="JN078_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HAY9041120.1"
                     /translation="MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQ
                     RAHARRLGLAGAMVMRLALLASIAWVTRLTNPLFTIFSQEISARDLILLLGGLFLIWK
                     ASKEIHESIEGEEEGLKTRVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAA
                     VVIAVGVMMFAARSIGDFVERHPSVKMLALSFLILVGFTLILESFDIHVPKGYIYFAM
                     FFSIAVESLNLIRNKKNPL"
     gene            7813..8031
                     /gene="ygdR"
                     /locus_tag="JN078_001898"
     CDS             7813..8031
                     /gene="ygdR"
                     /locus_tag="JN078_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein YgdR"
                     /protein_id="HAY9041121.1"
                     /translation="MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDD
                     DTGLVSYHDQQGNAMQINRDDVSQIIER"
     gene            8139..9179
                     /locus_tag="JN078_001899"
     CDS             8139..9179
                     /locus_tag="JN078_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(H)-dependent aldo-keto reductase"
                     /protein_id="HAY9041122.1"
                     /translation="MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGI
                     NLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPD
                     QALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDT
                     LDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPSIVTIQNPYSLLNRSFEVG
                     LAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKTAGARNTLFSRFTRYSGEQTQKAVAA
                     YVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDVLAEI
                     EAVHQVYTYPAP"
     gene            complement(9211..10404)
                     /gene="lplT"
                     /locus_tag="JN078_001900"
     CDS             complement(9211..10404)
                     /gene="lplT"
                     /locus_tag="JN078_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid transporter LplT"
                     /protein_id="HAY9041123.1"
                     /translation="MSESVHTNTSLWSKGMKAVIVAQFLSAFGDNALLFATLALLKAQ
                     FYPEWSQPILQMVFVGAYILFAPFVGQVADSFAKGRVMMFANGLKLLGAASICFGINP
                     FLGYTLVGVGAAAYSPAKYGILGELTTGSKLVKANGLMEASTIAAILLGSVAGGVLAD
                     WHVLVALAACALAYGGAVVANIYIPKLAAARPGQSWNLINMTRSFLNACTSLWRNGET
                     RFSLVGTSLFWGAGVTLRFLLVLWVPVALGITDNSTPTYLNAMVAIGIVVGAGAAAKL
                     VTLETVSRCMPAGILIGVVVLIFSLQHELLPAYALLMLIGVMGGFFVVPLNALLQERG
                     KKSVGAGNAIAVQNLGENSAMLLMLGIYSLAVMVGIPVVPIGIGFGALFALAITALWI
                     WQRRH"
     gene            complement(10397..12556)
                     /gene="aas"
                     /locus_tag="JN078_001901"
     CDS             complement(10397..12556)
                     /gene="aas"
                     /locus_tag="JN078_001901"
                     /EC_number="2.3.1.40"
                     /EC_number="6.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acyl-ACP--phospholipid
                     O-acyltransferase/long-chain-fatty-acid--ACP ligase"
                     /protein_id="HAY9041124.1"
                     /translation="MLFSFFRNLCRVLYRVRVTGDTQALKGERVLITPNHVSFIDGIL
                     LGLFLPVRPVFAVYTSISQQWYMRWLKSFIDFVPLDPTQPMAIKHLVRLVEQGRPVVI
                     FPEGRITTTGSLMKIYDGAGFVAAKSGATVIPVRIEGAELTHFSRLKGLVKRRLFPQI
                     TLHILPPTQVAMPDASRARDRRKIAGEMLHQIMMEARMAVRPRETLYESLLSAMYRFG
                     AGKKCVEDVNFTPDSYRKLLTKTLFVGRILEKYSVEGERIGLMLPNAGISAAVIFGAI
                     ARRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLE
                     DLKADVTTADKVWIFAHLLMPRLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILA
                     NVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPEL
                     VYDRSCTVLFGTSTFLGHYARFANPYDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL
                     EGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVPGIEEGGRLQLKGPNIMNG
                     YLRVEKPGVLEVPTAENVRGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMV
                     SLEMVEQLALGVSPDKVHATAIKSDASKGEALVLFTTDNELTLDKLQQYAREHGVPEL
                     AVPRDIRYLKQMPLLGSGKPDFVTLKSWVDEAEQHDE"
     gene            12945..13976
                     /gene="galR"
                     /locus_tag="JN078_001902"
     CDS             12945..13976
                     /gene="galR"
                     /locus_tag="JN078_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator GalR"
                     /protein_id="HAY9041125.1"
                     /translation="MATIKDVARLAGVSVATVSRVINNSPKASEASRLAVHSAMESLS
                     YHPNANARALAQQTTETVGLIVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQ
                     KERQAIEQLIRHRCAALVVHAKMIPDADLASLMKQMPGMVLINRILPGFENRCIALDD
                     RYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQGYYDALAESGIAANDRLVTFGE
                     PDESGGEQAMTELLGRGRNFTAVACYNDSMAAGAMGVLNDNGIDVPGEISLIGFDDVL
                     VSRYVRPRLTTVRYPIVTMATQAAELALALADNRPLPEITNVFSPTLVRRHSVSTPSL
                     EASHHATSD"
     gene            complement(13983..15245)
                     /gene="lysA"
                     /locus_tag="JN078_001903"
     CDS             complement(13983..15245)
                     /gene="lysA"
                     /locus_tag="JN078_001903"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HAY9041126.1"
                     /translation="MPHSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALK
                     QFDVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVFTAD
                     VIDQATLERVSELQIPVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGE
                     NSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIGSGVDYAHLEQVCGAMVRQVIEFGQD
                     LQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQ
                     SGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISALAADGRSLEHAPTVE
                     TVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRSLL
                     PEVLFDNGQARLIRRRQTIEELLALELL"
     gene            15367..16302
                     /gene="lysR"
                     /locus_tag="JN078_001904"
     CDS             15367..16302
                     /gene="lysR"
                     /locus_tag="JN078_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator LysR"
                     /protein_id="HAY9041127.1"
                     /translation="MAAVNLRHIEIFHAVMTAGSLTEAAHLLHTSQPTVSRELARFEK
                     MIGLKLFERVRGRLHPTVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIACLP
                     VFSQSFLPQLLQPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTETLHTPAGTER
                     TELLSLDEVCVLPPGHPLAVKKVLTPDDFQGENYISLSRTDSYRQLLDQLFTEHQVKR
                     RMIVETHSAASICAMVRAGVGVSVVNPLTALDYAASGLVVRRFSIAVPFTVSLIRPLH
                     RPSSALVQAFSEHLQAGLPKLVTSLDAILSSATTA"
     gene            complement(16289..16981)
                     /gene="ygeA"
                     /locus_tag="JN078_001905"
     CDS             complement(16289..16981)
                     /gene="ygeA"
                     /locus_tag="JN078_001905"
                     /EC_number="5.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="HAY9041128.1"
                     /translation="MKTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQVLLHSVD
                     FHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCTLPFL
                     HIADATGRAITGAGMTRVALLGTRYTMEQDFYRGRLTEQFSINCLIPEADERAKINQI
                     IFEELCLGQFTEASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVPEERSVLPVFDTAA
                     IHAEDAVAFMLS"
     gene            complement(17110..18525)
                     /locus_tag="JN078_001906"
                     /pseudo
     CDS             complement(17110..18525)
                     /locus_tag="JN078_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311725.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar porter family MFS transporter"
     gene            complement(18840..19601)
                     /gene="kduD"
                     /locus_tag="JN078_001907"
     CDS             complement(18840..19601)
                     /gene="kduD"
                     /locus_tag="JN078_001907"
                     /EC_number="1.1.1.127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase
                     KduD"
                     /protein_id="HAY9041129.1"
                     /translation="MILSAFSLEGKVAVVTGCDTGLGQGMALGLAQAGCDIVGINIVE
                     PTETIEQVTALGRRFLSLTADLRKIDGIPGLLDRAVAEFGHIDILVNNAGLIRREDAL
                     EFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTA
                     SKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRW
                     GLPSDLMGPIVFLASSASDYVNGYTIAVDGGWLAR"
     gene            complement(19631..20467)
                     /gene="kduI"
                     /locus_tag="JN078_001908"
     CDS             complement(19631..20467)
                     /gene="kduI"
                     /locus_tag="JN078_001908"
                     /EC_number="5.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-4-deoxy-D-glucuronate isomerase"
                     /protein_id="HAY9041130.1"
                     /translation="MDVRQSIHSAHAKTLDTQGLHNEFLVEKVFVADEYTMVYSHIDR
                     IIVGGIMPITKTVSVGGEVGKQLGVSYFLERRELGVINIGGAGTITVDGQCYEIGHRD
                     ALYVGKGAKEVVFASIDTATPAKFYYNCAPAHTTYPTKKVTPDEVSPVTLGDNLTSNR
                     RTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDACVFH
                     MMGQPQETRHIVMHNEQAVISPSWSIHSGVGTKAYTFIWGMVGENQVFDDMDHVAVKD
                     LR"
     gene            complement(20754..21935)
                     /locus_tag="JN078_001909"
     CDS             complement(20754..21935)
                     /locus_tag="JN078_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708633.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HAY9041131.1"
                     /translation="MKDVVIVGALRTPIGCFRGALAGHSAVELGSLVVKALIERTGVP
                     AYAVDEVILGQVLTAGAGQNPARQSAIKGGLPNSVSAITINDVCGSGLKALHLATQAI
                     QCGEADIVIAGGQENMSRAPHVLTDSRTGAQLGNSQLVDSLVHDGLWDAFNDYHIGVT
                     AENLAREYGISRQLQDAYALSSQQKARAAIDAGRFKDEIVPVMIQSNGQTLVVDTDEQ
                     PCTDASAEGLARLNPSFDSLGSVTAGNASSINDGAAAVMMMSEAKARALNLPVLARIR
                     AFASVGVDPALMGIAPVYATRRCLERVGWQLADVDLIEANEAFAAQALSVGKMLEWDE
                     RRVNVNGGAIALGHPIGASGCRILVSLVHEMVKRNARKGLATLCIGGGQGVALTIERD
                     E"
     gene            22190..>22588
                     /locus_tag="JN078_001910"
     CDS             22190..>22588
                     /locus_tag="JN078_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041132.1"
                     /translation="MSNIWSKEETLWSFALYGTAVGAGTLFLPIQLGSAGAVVLFITA
                     LVAWPLTYWPHKALCQFILSSKTSAGEGITGAVTHYYGKKIGNLITTLYFIAFFVVVL
                     IYAVAITNSLTEQLAKHMVIDLRIRMLVSLG"
BASE COUNT         5794 a         6048 c         5440 g         5306 t
ORIGIN      
        1 atacagtcac cctgtccgac aatttccagc ccttcgccgg tacagatgcc atgacaataa
       61 cccgccctct ggagatgctt cgcgacggta aatacccgca gccagatttc atcttccagc
      121 gccagcttac gggtgctcgt taaactttca cgctgtaacg caggcagaaa gcgtgcagcc
      181 cccagcaaca atacgctact gatcgccata gcaatcaaca cttccagcag agaaaaacct
      241 tgctctttta caggcatcct tctgtttctc cttgctgaca aagccggagt cttccccacg
      301 gcgaaaccac cagccaccac tcgcccgttg agtttttgaa gcgaatatgc ccggcccatg
      361 cggtattgcg caggccaaag aaagcaagcg aaggtgtcag gtcgctcatt tcgacttcgg
      421 gccagcgtgg cacaaagacc aatggtgaac tgccatgaca ggtattggcc ccagcagcgg
      481 aactcacaag gcaccataac gtcccctccc tgataacgct gatactgtgg tcgcggttat
      541 gccagttggc atcttcacgt aaatagagca aatagtcccg cgcctggctg gcggtttgcc
      601 atagccgttg cgactgctgc cagtattgcc agccatagag tccacttgcg cttagcatga
      661 ccaaaatcag catcgcgacc agcgtttcaa tcagcgtata accacgttgt gttttcatgc
      721 cggcagtatg gagcgaggag aaaaaaagac gagggccagt ttctatttct tcggcgcatc
      781 ttccggacta tttacgccgt tgcaggacgt tgcaaaattt cgggaaggtg tctcgaagaa
      841 tttaatggag ggtaaaaaaa accgacgcac actagcgtcg gctctggcag gatgtttcgt
      901 aattagatag ccaccggcgc tttaatgccc ggatgcggag cgtagccttc aatctcaaaa
      961 tcttcgaaac ggtagtcgaa gatggattcg ggtttacgtt tgataatcaa cttcggcagc
     1021 ggacgcggtt cgcggcttaa ttgcagatga gtttgatcca tatgattgct gtacaggtgc
     1081 gtgtcgcccc ccgtccagac aaaatcgccc acttccagat cacactgctg cgccatcata
     1141 tgcaccagta acgcgtagct ggcaatgtta aacggcaggc cgaggaaaac gtcacaggag
     1201 cgctgataaa gctggcaaga gagtttgccg tctgccacat agaactggaa gaacgcatgg
     1261 cacggtgcca gcgccatttt atccagttcg cctacgttcc acgctgaaac aataatgcgg
     1321 cgcgaatccg ggtcgttttt cagctggttc agtaccgtag tgatctggtc aatatgacga
     1381 ccatccggcg ttggccaggc gcgccactgt ttaccataca ctggcccgag gtcgccgttt
     1441 tcatcggccc attcgtccca gatggtgaca ttgttttcgt gtagataagc aatgttagtg
     1501 tcgccctgca gaaaccacag cagttcatgg atgatggaac gcaggtggca acgtttagtt
     1561 gtcaccagcg ggaatccatc ctgcaggtta aaacgcatct gatgaccaaa aatggaaagc
     1621 gttccggttc cggtacggtc gtttttctgt gtgccttcgt cgagcacttt ttgcatcagt
     1681 tctaaatact gtttcatggt tcctcaggaa acgtgttgct gtgggctgcg acgatatgcc
     1741 cagaccatca tgatcacacc cgcgacaatc atcgggatgg aaagaatttg tcccatgctg
     1801 atgtactgca cccaggcacc agtaaactgc gcgtcgggct ggcggaaaaa ctcaacaatg
     1861 atgcgaaacg cgccgtaacc aatcaggaac aaacctgaga cagctcccat tgggcgcggt
     1921 ttacgaatat acaggttgag gataataaac agcactacac cttccagcaa cagctcgtaa
     1981 agctgtgatg ggtggcgcgg cagcacaccg taagtatcga aaatggattg ccactgcggg
     2041 ttggtttgca gcagcaaaat atcttctgta cgggagccag ggaacagcat ggcaaacggg
     2101 aagttcgggt caacgcggcc ccacaattca ccgttaataa agttgcccag acgcccggca
     2161 ccaagaccaa acggaatgag tggtgcgata aaatcagaga cctggaagaa ggaacgttta
     2221 gtacggcggg cgaagataat catcaccacg ataacgccaa tcaggccgcc gtggaaggac
     2281 atgccgccgt cccagacacg gaacagatac agcggatcgg ccataaactg cgggaagttg
     2341 tagaacagaa cataaccaat acgtccaccg aggaagacgc cgaggaagcc cgcatagagt
     2401 aagttttcaa cttcattttt ggtccagcca ctgcccggac gattcgcccg acgtgttgcc
     2461 agccacattg caaaaatgaa acccaccaga tacatcaggc cgtaccagtg aagcgccacg
     2521 ggtcctattg agaaaatgac cggatcaaac tccggaaaat gcagatagct actggtcatc
     2581 tgtcaccaca agttcttgtt atttcgctga aagagaacag cgattgaaat gcgcgccgca
     2641 ggtttcaggc gctccaaagg tgcgaataat agcacaaggg gacctggctg gttgccggat
     2701 accgttaaaa gatatgtata tgatccgcgc tataaccctc cgcgaatcag cccgcccatg
     2761 ccgcgacgct ccataaaggc tgcaacctga tgacgaactt cggtcgccag ttgcgcttcc
     2821 agactacgct gcgcaagatt ttctgcttcg gcaaaatcaa tgcgccgcag caggtatttt
     2881 acccgcgcta cagaacgtcc gttcatagac agatggcgat acccaagccc aatgaggatt
     2941 gccacgcaca tgggatcgcc cgccatttca ccgcacaaac ggagatcgat accatgtatt
     3001 tccgcttccc gggcgatcat tgccagagct cgtaacattg caggatgaag gctgtcataa
     3061 atgttcgcca cccgggtatt gttgcgatca acggccagaa tgtattgagt cagatcgttg
     3121 gtgccaacag agatgaaatc gacccgcttt gccagatgcg gcagcataaa taccattgac
     3181 ggtacttcca gcatgatgcc gatacgtggt ttgggaattt cgtaaccgat catctcctcg
     3241 acttcacgtc cggcacgttc aatcaggcgg cgtgcttcgt caacttcatc gaggctggtg
     3301 accatcggca acagaatatt caggttgccc gtagcggcat tagcacgcag catcgcccgc
     3361 acctggatca agaagatctc cggctgatcg agcgtaatgc gaatcccacg ccaacccagg
     3421 catggattct cttcgctgat cggcatgtaa ggcagctgct tatctgctcc gacatccagc
     3481 gtacgcaagg tgacgggttt atcattgaac atttgcagca tcccctgata ctgcgccacc
     3541 tgttcttctt ccgacgggaa accactttgc agcatgaatg ggatttcagt gcgataaaga
     3601 ccgatgccat caatacggct gcccagtttt tcttcatgtt ccgggcttaa accagcattg
     3661 agcatgactt ttatacgctc accgcttttt aactgcgcgg gtaaattgac gtcatcttcc
     3721 gccagacggc taagctcaat ctcttcacta attagccgct gatattcttg cagcagtatc
     3781 ggctccggat cgaccagcaa ttcaccgcga tagccatcaa cgatcagcgt cctacgatgc
     3841 agcaccgaag gctgaatatc cgcgcccatc acggtaggga gccccagcgc acgtaccatg
     3901 atcgcagcat gggagttggc tgcgccatct cgcacgacaa caccgactaa gcgatcctgg
     3961 ggcagctcag caagagttgt cgctgacagt tcatctgcca ccagaatgaa acgttccggc
     4021 caggcgttcg gcccttgatt agcgtcatca agatgaaaca gcaatcgctg acccagcgca
     4081 cgtaaatcgc cagcccgctc tttgagatag ttatcgctta gcgcggcaaa ctgttcggca
     4141 aatttttcaa tgaccgtttt taccgcccac tctgccaccg agcctttatc aacctcggca
     4201 aacaattcgc gacgcagccg ggtgtccgaa agcaggtgcg agtaaagatc gaaaatagcc
     4261 gccgtttctt tttgtgctcc ggcggcaaag cgtttgctgt agcggcgaaa ctcgtttgcc
     4321 gcttcttcca gcgccccggt caatcgttcg cgttccagag ccggatccag cgttgatgcc
     4381 tgatacacct gttccattaa aggtaacgtg gcatcctgcc agccttcggc aatcgccaca
     4441 ccaggtgctg ccggtaatgc gcggattcgc gtctggcgat attgcccaaa caaggcagtc
     4501 aactgcgact gagaaagaat agctgccatc tgggtggcaa gcgtcaccag gaaggattct
     4561 tcactttcgt catactggcg caactctcgt tgctgtacca ccagtacacc aagcaactgg
     4621 cgacgttgaa taattggtac gcctaaaaac gcgcggaaac gttcttcttt tacggagggg
     4681 atgtatttga agctggggtg cttttgcgca tctgcaaggt ttatcggttc cgccagcctg
     4741 ccaaccaggc cgacgatccc ttcatcaaac gcgagcgtta cagtgcgacc gcgtggtttt
     4801 ttcagccccc gggtcgccat caggtagtaa caacgtcgat catgatcggc caggtagacc
     4861 gaacagacct cggtatccat cgcaagacag atgtcggtaa ccagaatatt taacgcctca
     4921 ttcaggcgtg gtgcgctggc taccttttcg actatttcgc gcaggcgagt gagcataatt
     4981 ggcgtgactt aacctctttt acgtcgataa gcagatgtgt tttgtggttt tggcgtattt
     5041 tcctgcagtg acatcaccac actcgcgaac tctttcatta ccctacggta gacatcacgt
     5101 ttaaatgaca ccacctgtct gaccggatac cagtaactta cccatcgcca gccgtcaaac
     5161 tctggtgtac tgctggtttg catattgatt tctgcatcgc cgctcaccag ctgcaagaga
     5221 aaccattttt gtttttggcc gatacaaacc ggcttcgtgt cccaacgcac caaacgtttc
     5281 ggtaatttgt agcgcaacca gttacgcgtt gaagcaagga ttcgaacgtc tttgcggctt
     5341 aatcctactt cttcaaacaa ttcacggtac atcgcctgct ctgcggattc tccggggttg
     5401 attccgcctt gcggaaattg ccaggagtgc tgaccaaatc gccgggccca cattacctgc
     5461 ccctggcgat tacaaatcac gatacctacg tttgggcggt agccatcgtc atcaatcacc
     5521 ggactacctc aaaataaagc tttatatacg aatgattgtt tcatactcca ggaagacggt
     5581 aaaccactct ctgcagggca ttacacacta ataacaattg aataactcac agttatgtgc
     5641 agagttataa acagaggaag gggtggatag ccgtttttat tcaccttttc tgtggataga
     5701 gttgtgaaga actacggaat tactacggga aaacccggag cattctgaat aagcccgata
     5761 taggcatttt aaaatattca ttataagtca atgcattaca tgtaatttga gtaatgaaaa
     5821 agagtaattc gtgacccagg tcacacctct catttacggg ttggcgaaag atcaaccaat
     5881 gccgtattta tccacagaat gtgccactaa gttaagcact gaaccactaa aaactggagt
     5941 ttcgtcgcac gtcaaggctg taaatggaaa cagtagtgga ggtttttcac agttatccca
     6001 gctttctgtg gataacatgg tgtaagatcc tgtttatttt cagtgaccag atttggaaaa
     6061 cctattgcag tgctgcgcaa ctcgattatc ggcagcctaa aaagcaatat aaatcagaga
     6121 attgaacaac acatgtggaa aaagttacac tgcgaatatt cggtacataa ttgctgtttg
     6181 ttttttaacc aaggtatcat gacatgtccc aacctcgccc actgctctct cctcccgaaa
     6241 ctgaagaaca gttgttagcg caagcacagc aactttctgg ttatacattg ggagaactgg
     6301 cggcacttgc cgggctggtt acgccagaga atttaaaacg cgataagggc tggattggcg
     6361 tgttactgga gatctggcta ggtgccagcg cagggagtaa acctgagcaa gattttgctg
     6421 ctctgggcgt ggaacttaaa actatccctg tggatagtct tggtcgtccg ctggaaacaa
     6481 cattcgtttg tgttgccccg ttaacgggta atagcggggt gacctgggaa accagccacg
     6541 tgcgccacaa gctcaaacgc gtactgtgga taccggttga aggcgagcgc agcatcccgc
     6601 tggcgcagcg tcgcgtagga tccccgttgc tgtggacccc gaatgaagag gaagaccgac
     6661 agctacgcga agactgggaa gaattaatgg atatgattgt tctcggtcag gttgagcgga
     6721 tcaccgctcg tcacggggaa tatttacaga taagaccgaa agcagcgaat gcgaaagcgc
     6781 ttaccgaagc cattggtgcc cggggcgaac ggattctgac gctgccacgc ggcttttatt
     6841 tgaagaagaa tttcaccagt gcactactgg cccgtcattt tctgatccag tagccatcgc
     6901 tttgacctgc cgctttccgg gcatataatt accgcttcat ttttttggca gggcttttta
     6961 gatgttattt gcatggataa ccgatcctaa cgcctggctt gcgctcggta cgctgacgct
     7021 gctggagatc gttcttggga tcgacaatat tattttcctt tctctggtgg tggcaaagct
     7081 tcccacagca caacgtgctc atgcgcgccg tctggggttg gcgggagcca tggttatgcg
     7141 tctggcgctg ctggcatcaa tcgcctgggt tacgcgcctg acaaatccgc tttttacaat
     7201 attcagtcag gaaatttctg cccgtgattt gattctgctt ctgggtggct tgttccttat
     7261 ctggaaagcc agcaaggaaa tccacgaatc cattgaaggt gaagaagaag ggctgaaaac
     7321 acgcgtttca tcattcctcg gcgctatcgt gcagattatg ctgctggata ttatctttag
     7381 cctcgactcg gtgattacgg ctgtgggtct gtcagatcac ctgtttatta tgatggcagc
     7441 cgtggtgatt gccgtaggcg tgatgatgtt cgccgcgcgc tcgattggtg attttgtcga
     7501 acgccatcct tcggtaaaaa tgctggcgct ctctttcctg attctggtgg gctttaccct
     7561 gattctggaa agtttcgaca tccacgtacc gaaaggttac atctacttcg cgatgttctt
     7621 ctctattgcg gttgaaagcc tcaacttgat tcgcaacaaa aagaatccgc tctgatactc
     7681 cgtacgctct cctgcgggag ggcgtactca ctccttttac cctcacagtt taagattttc
     7741 ctgctttcaa gatatataac gtcgttttat aaacagacta ttatcatagg taggccaaat
     7801 gaggataacc ggatgaaaaa atgggcagta ataatttctg cagtcggact ggcgtttgct
     7861 gtttccgggt gttccagtga ttacgtcatg gcgaccaaag atggccgtat gattttgacc
     7921 gatggaaaac ctgaaattga tgatgatacc gggctggtga gttatcacga tcagcaaggt
     7981 aacgcgatgc aaattaaccg tgatgatgtt tcgcaaatta ttgaacgtta acaaataagg
     8041 tcagcatccg gctggcctta agatttttct ctttcccttt tcccttccct ctgccatttt
     8101 tatattcctt atgtcgtgat tataaaaagg aaacggctat gcaatatcac cgtatacccc
     8161 acagttcgct ggaagtcagc acgctggggc ttggcacgat gacgtttggt gaacagaaca
     8221 gcgaagccga cgcccacgca caactcgact atgccgtcgc tcagggcatt aaccttatcg
     8281 acgttgccga aatgtaccca gtacctccgc gccccgaaac gcaagggtta accgaaacct
     8341 acgtcggcaa ctggctggcg aaacatggca gccgcgaaaa gttaattatc gcctccaaag
     8401 tgagcggacc gtcgcgcaat aatgacaagg gcatccgccc ggatcaggcg ctggatcgga
     8461 agaatatccg cgaagcgctg catgacagcc tcaagcgcct acagactgat tacctcgatc
     8521 tttatcaggt gcactggccg cagcgcccga ccaactgctt cggcaaactc ggttatagct
     8581 ggacggattc tgcgcctgcg gtttcgctgc tggatacgct ggacgcactg gcagagtacc
     8641 aacgcgcggg aaaaattcgt tatatcggcg tgtcgaacga aactgcattt ggcgtaatgc
     8701 gctacctgca tctggcggac aaacacgatc tgccgagtat tgtcaccatt cagaaccctt
     8761 acagtctgtt aaaccgcagt tttgaagtag gtctggcaga agtcagccag tatgaagggg
     8821 tcgaactgct ggcctattca tgcctgggtt tcggcacgct gaccgggaaa tatctcaatg
     8881 gtgcaaaaac cgctggcgca cgtaatacgc tctttagtcg gttcacccgc tatagcggtg
     8941 agcaaacgca aaaagccgtc gcggcgtatg ttgatatcgc cagacgtcat ggcctggacc
     9001 ctgctcagat ggcgctcgcg tttgtacgcc gtcaaccgtt tgttgccagc actctgctgg
     9061 gcgcaaccac gatggatcag ctgaaaacta acatcgaaag tttgcatctg gagttaagcg
     9121 aagacgtatt agctgaaatt gaagcggtgc atcaggttta tacttatccg gcaccataag
     9181 attaacgccg gttaaaaccg gcgttaaata ttaatgacgg cgctgccaga tccacagcgc
     9241 cgttattgcc agcgcaaaca gcgcaccgaa gccaatgcca atgggcacga ccgggatgcc
     9301 taccattacc gccagcgagt aaatgcccag catcaacaac atggcgctgt tttcgccaag
     9361 gttttgtact gcaatcgcat tccccgcccc gacgcttttt ttaccccgct cctgtagcaa
     9421 cgcattgagc ggaacgacaa aaaagccccc catcacgcca atcagcatca acaaggcata
     9481 ggctggcagc agctcgtgtt gcagggaaaa aatcagtacc accacgccaa tcaaaatccc
     9541 ggctggcata cagcgtgaca cggtttccag cgtaactaac ttcgctgccg cacctgcgcc
     9601 aaccacgata ccaatcgcta ccatcgcgtt gagataggtg ggcgtagagt tatcggtaat
     9661 gcccagcgcc accggtaccc acagcaccaa caggaaacgc agcgtgacac ccgctcccca
     9721 gaataaactg gtgcccacca gcgaaaaacg cgtttcacca ttgcgccata gcgaggtgca
     9781 ggcattcagg aaactgcggg tcatgttgat gagattccaa gactgccccg gacgcgccgc
     9841 cgccagtttg ggaatgtaga tattggcaac gaccgcacca ccgtaggcca gtgcgcatgc
     9901 ggccagggcg acgaggacat gccagtcagc cagcacacca ccggctacgg aaccgagcaa
     9961 aatcgccgct atggtagaag cttccattaa accgttagct ttcactaact tactacccgt
    10021 ggttaattcg ccgagaatac cgtatttcgc cggtgaatag gctgcagcac caacccccac
    10081 cagcgtatag ccgagaaacg gattgatacc aaagcagata ctggctgcgc ccagcagctt
    10141 caggccgttg gcaaacatca tcacccggcc tttggcgaag ctatccgcca cctgcccgac
    10201 aaacggcgca aaaagaatgt aagcacctac aaacaccatt tgcaggatgg gctggctcca
    10261 ctccggatag aactgcgctt tcagtaacgc cagagtggca aacagtaggg cattatcgcc
    10321 aaacgcagag agaaactgcg ccacgataac cgctttcatc cccttcgacc acaacgaagt
    10381 gttagtgtgc actgactcac tcatcgtgtt gttccgcttc gtctacccag cttttcaacg
    10441 tgacaaagtc aggtttgccg ctgccaagta atggcatctg tttcagatag cgaatatcgc
    10501 gcggtacagc aagctccggc acgccgtgct cgcgggcata ctgttgcaac ttatcgagcg
    10561 tcagttcgtt atctgtggtg aaaagcacca gtgcctcgcc tttgctggca tcgctcttaa
    10621 tcgcagtggc atggacttta tctggcgaaa caccaagtgc cagttgttcc accatttcca
    10681 gcgacaccat ttcgcctgca attttggcaa agcgttttgc gcggccctga atctgcacaa
    10741 agccctgctc gtcaaaacgc acaatatcgc cagtgtcata ccagccgcgc tccatttcgc
    10801 cgcgaacatt ctcggcggtg ggcacttcca gtacacctgg cttctccacc cgcagatagc
    10861 cgttcattat gttcggccct ttcagttgca ggcgtccgcc ctcttcgata ccaggaaccg
    10921 acaacagacg cgcatccatt cctggtagaa tacgccctac cgtaccgggt ttcgccgcca
    10981 tcggtacgtt gatagaaacg acaggcgcgc actcggttac accatagcct tcaaggatgc
    11041 gcaggccaaa tttatcctgc caaagctgtt tggtactttc ttgtagtttt tctgcgcctg
    11101 ccaccacata gcgtagacga tagaagtcat acgggttggc gaaacgcgcg tagtgaccga
    11161 ggaaagtcga ggtaccgaac aacacggtgc aactgcggtc atacaccaac tccggcacaa
    11221 tgcggtaatg cagcgggctt ggataaagga acacttctgc acctgtaagc agtggcgtaa
    11281 acaggcctac cgtcagccca aaggagtgaa acagcggtaa tgccgacata aagcgatcgt
    11341 tggtggtgaa gtcggcaatc gttttaatct gctcgacgtt cgccagaatg cttttatggc
    11401 tatggacgac gccttttgga tggccttcag aaccggaggt aaagaggatc agcgcctctt
    11461 cttccggctg ctgttttacc tgcgccaggc gcggcatcag caaatgagcg aagatccata
    11521 ctttgtcggc agtggtgaca tctgctttta aatcttccag atagacccag cgcacctgag
    11581 taagttgctc cggcagatgc cagagtttgc ctttatcgag aaactggcgg gaagtgaaga
    11641 tggttttgat ttcagccgcc gtaatagcac tggtcagccc ttttacccca gcagtgtagt
    11701 tcatcattgc gggaatgcgg cgacgcgcga tggccccaaa aatcactgcc gcactgatgc
    11761 ctgcattggg cagcattaag ccgatgcgtt cgccttcaac actgtatttt tcaaggatgc
    11821 gtccaacaaa cagcgttttc gtaagcaatt tgcgatagga gtctggggta aagttgacgt
    11881 cttcgacaca tttcttcccg gctccgaagc ggtacattgc actcagtaaa gattcgtaca
    11941 gagtttcacg cgggcgcacc gccatacgcg cttccatcat tatttgatgc agcatttcgc
    12001 cagcgatttt gcgacggtca cgggcacgcg acgcatccgg catcgccacc tgcgttggag
    12061 gcaaaatatg cagagtaatt tgcgggaaca agcgacgttt aaccagacct ttcaggcggc
    12121 tgaagtgcgt aagttccgcc ccttcaatac gcacaggaat aaccgttgca ccagacttcg
    12181 ccgcgacaaa acccgcgcca tcgtagattt tcatcagcga gcctgtagtg gtgatgcgtc
    12241 cttcagggaa aatcaccact ggtcggccct gttccaccag acgtaccaga tgtttaatag
    12301 ccataggttg cgtcgggtcg agaggaacaa agtcgataaa tgatttcagc caacgcatat
    12361 accactgttg gcttattgag gtgtaaacgg caaacactgg acgcacaggt aaaaacagtc
    12421 caagcaaaat gccatcaata aaagagacgt gattaggcgt aattagaacg cgctcgccct
    12481 tcagtgcctg ggtgtcaccc gtaacgcgaa cgcgatacaa aacacggcac aaatttcgaa
    12541 aaaagctaaa aagcattcca actccctttg ctctgattca gtaaaagcga atggagggag
    12601 attacacgag ataaagaacg cgagcgacag taaattaggt gcgaaaaaaa acctgcgcat
    12661 ccgcgcaggt tggtgcaaga gacagggtac gaagagcgta ccgaataatc tcaccaatca
    12721 atacctctgg gatcaccact ttagcaacct gaagccaaac gccaccagcg gtcaatcgca
    12781 acagcgtttc gcaaagtgta accaaaggtt tgcaatctct ttttttgtct tacttatttg
    12841 cgtttggctc acattcccac gatgaaaaca cgccactcct tgaaccaacg ggcgttttcc
    12901 gtaacactga aagaatgtaa gcgtttaccc actaaggtat tttcatggcg accataaagg
    12961 atgtagcccg actggcaggc gtttcagtcg ccaccgtttc ccgcgtcatt aataattcac
    13021 ccaaagccag cgaagcttcc cggctggctg tgcatagtgc aatggagtct cttagctatc
    13081 acccgaacgc caacgcccgt gcgctggcgc agcagaccac tgaaacggtc ggtctgatcg
    13141 ttggtgatgt ttccgatccg tttttcggtg caatggtgaa agcggtcgaa caggtggctt
    13201 atcacaccgg taatttctta ttgattggca acggttacca caacgaacaa aaagagcgtc
    13261 aggctattga gcaactgatc cgccatcgct gtgctgcgtt ggtcgtccat gccaaaatga
    13321 tcccggatgc cgatttagcc tcattaatga aacaaatgcc cggtatggtg ctgatcaacc
    13381 gtatcctgcc tggctttgaa aaccgttgta ttgctcttga cgatcgttac ggtgcctggc
    13441 tggcaacgcg tcatttaatt cagcaaggtc atacccgcat tggttatctg tgctctaacc
    13501 actctatttc tgacgccgaa gatcgtctgc aagggtatta cgatgccctt gctgaaagtg
    13561 gtattgcggc caatgaccgg ctggtgacat ttggcgaacc agacgaaagc ggcggcgaac
    13621 aggcaatgac cgagcttttg ggacgaggaa gaaatttcac tgcggtagcc tgttataacg
    13681 attcaatggc ggcgggtgcg atgggcgttc tcaatgataa tggtattgat gtaccgggtg
    13741 agatttcgtt aattggcttt gatgatgtgc tggtgtcacg ctatgtgcgt ccgcgcctga
    13801 ccaccgtgcg ttacccaatc gtgacgatgg cgacccaggc tgccgaactg gctttggcgc
    13861 tggcggataa tcgccctctc ccggaaatca ctaatgtctt tagtccgacg ctggtacgtc
    13921 gtcattcagt gtcaactccg tcgctggagg caagtcatca tgcaaccagc gactaaccgc
    13981 agttaaagca attccagcgc cagtaattct tcgatggtct ggcgacggcg aatcaaccgc
    14041 gcctgaccat tatcaaacag aacttctggt aacagcgaac ggctattgta gttggatgac
    14101 attgatgcgc catatgcccc tgtatcatgc agtaccagat aatcacctgc cttcacttcc
    14161 ggcaaggcgc gggtttcaac atttccccct tcctgctggg taaagacatc gcccgattca
    14221 cataacggtc cggcgacgac ggtttccacc gttggcgcgt gttccagaga acgaccatca
    14281 gctgccaggg cactgatatg gtggtaacta ccgtacattg ccgggcgcat cagatcgttg
    14341 aacccggcat caaccagcac aaagtggcgg ctccccattt gtttgacgct ccgcacctga
    14401 gtaattaata cgccagactg cgctaccagg aagcgacccg gttcaatttc cagtttcaca
    14461 gggtggccca aatggcgggc gatttgctca cgcgcggcat tccacagacc ataataatgt
    14521 tcggtatcaa ccgcctcttc accctgttga taaggaacag aaagcccacc gcccgcagaa
    14581 atagcctgta aatcctgacc gaattcgatg acctgacgca ccatagcacc acacacctgt
    14641 tccagatggg cataatcaac gccagaacca atgtgcatgt gaatgccgac cagctgcaga
    14701 tgatgacgtt gtatcacgtc cagtgcggcg ggcagatcgg tgtaccagat accgtgcttg
    14761 ctgttttcgc caccggtatt ggttttttgg ctatgtccgt gaccaaaccc cggattaacg
    14821 cgcagccata cccgatgccc tggcgaaacc tggcccagtt ggtcgagcat atcaacagaa
    14881 cccgcattca ccggaatttg caattcactg acgcgttcaa gcgtcgcctg atcgataaca
    14941 tctgccgtaa aaacaatatc atcggggtgc gtttgcggat tgtaacccgc cgccaacgca
    15001 cgctctattt cgcctaacga gacggaatcc actttcacgc cctgctcacg cattaagcgc
    15061 aaaatatgaa tattggaaca ggctttctgt gcaaagcgca ccacatcaaa ctgtttcagc
    15121 gctgcaatct gccgacgaat aatttgcgca tcgtagaccc acaccgggca gccaaattca
    15181 gcgggcaaac gcagcagatt ttcggcggtg agatcggtat cggtgctgaa cagtgaatgt
    15241 ggcataacaa actccagata agtgcttttt tatgattacg ccacatcata aaaagaataa
    15301 aaaatatcga tttatgtcga gtctatgcaa aaatgatatg gattaccgga ttgcgagaga
    15361 gcgctaatgg ccgccgttaa cttacgtcat attgaaattt ttcatgcggt aatgaccgcc
    15421 ggaagcctga ctgaggcggc acacctgcta cacacctcac agccaaccgt cagccgcgaa
    15481 cttgcgcgct ttgagaagat gatcgggctg aaattgtttg agcgcgtacg tgggcgatta
    15541 catcctaccg tgcaaggact gcgtctgttt gaagaagtgc aacgatcctg gtacggactg
    15601 gatcgaattg tcagcgctgc agaaagtctg cgcgagtttc gccagggaga actgtctatt
    15661 gcctgcctgc cggtcttttc gcaatctttt ttaccgcagc tcctgcaacc ctttctggca
    15721 cgttatcccg atgtcagctt aaatatcgtg ccccaggaat caccgctact tgaagagtgg
    15781 ctctcggccc agcgtcatga tttaggactc actgagacac tccatacgcc tgcgggaaca
    15841 gaacgtaccg aattactctc tttagatgaa gtgtgtgtgt tacctccggg tcatccgctg
    15901 gcggtaaaaa aggtattaac gccggatgat tttcagggtg agaactacat cagcctttcc
    15961 cgtactgaca gctatcgcca gttgctggat cagctattta ctgaacatca ggttaaacga
    16021 cgcatgatcg tagaaaccca cagcgccgcg tcaatctgcg caatggtacg ggcgggggta
    16081 ggtgtttcgg tggttaaccc gctcaccgca ctggattatg cggcaagcgg tttagtggtg
    16141 cggcggttca gtattgcggt tccgttcaca gtcagcctga tccgccccct gcaccgcccg
    16201 tcatcagcgc tggtgcaggc atttagtgag catttacaag cggggttacc gaaactggtc
    16261 acttctcttg acgctatttt gtcgtcagct acgacagcat aaaagcgaca gcatcctcgg
    16321 catggatcgc cgcagtatca aacacaggca aaacactgcg ctcttctggc accagtaaac
    16381 caatttctgt gcagccaaaa atgacgccct gtgcgccctg ttctgcaagg cgagcaatca
    16441 cttgcgcata ataagcgcgt gacgcttcgg taaattgccc cagacacagt tcttcaaaaa
    16501 taatctgatt aattttcgcc cgttcatccg cttcaggaat aagacaattg atggaaaatt
    16561 gttccgtcag ccgcccgcga taaaaatcct gttccatggt gtaacgcgta cccagcagcg
    16621 ccacacgagt cattccggcc ccggtaattg cacgtccggt ggcatccgca atgtgtaaga
    16681 aaggcagagt gcaacgtgac tcaatggcat ccgccacttt atgcatcgta ttggtacata
    16741 acacaatacc ttctgcgccc gcccgctgta agccaagcgc cgcctcagcc agaatgtccc
    16801 cggttttatc ccattccccg cgacgctggc actcttctat ttcatgaaaa tcgacgctat
    16861 gtagcagcac ttgcgcagag tgaagcccac caagccgctg tttaatgcct tcatttatca
    16921 aacgatagta aggaatggtg gattcccagc tcattcctcc cagcaaacca attgttttca
    16981 ttcctctctc ctgatgtgtg ttaccgcaac aaggctgaat aaggaacgag acaaacgcct
    17041 caacggccaa gtgcccaatc tctattaacg aaaaaagggc cggatgtaca gcacatccgg
    17101 cccgtgaaat cagatgccga tatttctcaa cttctcgcct gccatcagtt tgcgttcgat
    17161 atgttccagc gtgacatttt tggtttccgg aatgagccag aaagtgatgc ccacaaacgc
    17221 aatgttcagc gcagtgtaga gccagaacgt accggcagcg ccaatgctgt cgagcagcgt
    17281 caggaaggtc gccgataatc atattcgaca cccagttcgt ggtggtcgaa caggtaatac
    17341 cgaaatcgcg gcatttcagc ggctgaattt cagagcacag gatccacacc actggcgcgg
    17401 cgctcatcgc ataaccggca atacacatca tcgtcatgcc aacagagagc caggacaatc
    17461 cactggaagc cgtaccgtta tcaaactgca tcaggcaata gcccagcacc agagtgccta
    17521 acgccatcac gctgaaacca attttcagag ccggtttacc cctgctttat ctaccgtaaa
    17581 caccgcaata aaggtggcga acataaaggt cagccctacg accagagtcg caatcatctg
    17641 ttgttctgtg gtcgtaaagc ccgccatttt gaagatacgc ggcgcgtagt acatgatgat
    17701 gttcataccg gtaaactgct gcatcgcctg caacaacata ccgagaaaca cagcacgacg
    17761 gacgttacgg ttgatcttaa acagtgccca accgccctgt tttaacttca ggctttcacg
    17821 aatttcgttg agttcttctc gcgctttttc cgacgtatcg cgcagcatac gcaatacttc
    17881 ttccgcctca atatgacgcc ccttttccgc caaccagcgc gggctatttg gcaggaagac
    17941 caccagaata atcagcagaa ctgctggtaa agcaagaacc cccaacattg cgcgccagtt
    18001 accgctataa ctgaacgctg tatcggataa aaacgccagc acgatgccga gtgtgaccat
    18061 caactggtac atactgatca tcttaccgcg aacgttttca cttgccattt cagaaagata
    18121 cagaggagcg gtgtaagacg cgatcccgac agcaatgccc agccccacac gagcggcgat
    18181 taacatctct acgctggtcg caaaagcgga ccctatagaa ccgagtacaa acaggatggc
    18241 ccccgccatc aggctgtatt tacgccccag gcggaacgac agccaaccat taaacagcgc
    18301 accaattgct gcgccgagca tcatgctact aaccacccat tcctgcaaat gactggtcag
    18361 cacaaagtga tcggtaatga acggcaacgc tccggcgatt acgccgatat caagaccaaa
    18421 taacaatcct gcgaccgcag cagctaccga aacaaacata ttcatacgcc gcgtatcccg
    18481 caaagaacgt ggcgttaaag cagattccgt attgatagta accatttttt cctgccagca
    18541 gagagtaaga catagtgaaa aaatacgtga acaactcacg caggtgtcag gtcggaaaca
    18601 gcataaatat ggattaaatt gctgcgacat gtcgttatgt gatggatatt ccaattttca
    18661 aattaagttg aattattgag attattatta accacctaat tttacagcag ataaaattca
    18721 taaagttcat taattgataa ttaatatgga ttatttcata accatgatat ggattatgat
    18781 gatctacagg tataaaaaac cctgccatgc ggcagggtca taaaagtaag aagaatgaat
    18841 taacgcgcca gccaaccgcc atccacggca atggtataac cattcacata atctgaagcg
    18901 ctggaggcaa ggaacactat cggccccatc aggtcactcg gcagtcccca acgaccagct
    18961 ggaatgcggt cgagaatttc cgcgctacgt tgttcatctg cccgtagttg ttgagtattg
    19021 ttggtcgcca tgtaacccgg agctatcgca ttaacattaa tgttgtgttt agcccattcg
    19081 ttcgccatca atcgcgtcac acccatcacg ccgctttttg atgcggtata agaaggcaca
    19141 cggatcccgc cctggaagga gagcattgac gcgatattga taatcttgcc gccattgcct
    19201 tgcgcgataa agtgtttcgc cgctgcctga gacatgaaga atacgctctt gatattcagg
    19261 ttcatgacat cgtcccagtc tttttcgctg aactcgagag cgtcttcgcg gcgaatcaat
    19321 ccggcgttat tcaccaggat atcaatatga ccaaattcag ctaccgcgcg atccagcagt
    19381 ccaggaatgc catcaatctt tcgcagatcg gcggtcaggc ttaaaaaacg acgccccagc
    19441 gccgtgacct gctcgatggt ttcagtcggt tcaacgatgt taatgccaac aatgtcacag
    19501 cccgcttgcg ccagccccaa cgccatcccc tggcccagcc cagtatcaca accagtgacg
    19561 accgcaactt taccttcgag agaaaatgca cttaaaatca taacaatacc ttattcgttt
    19621 atgcccacaa ctagcgcaaa tctttaacgg ccacatggtc catatcatca aagacctggt
    19681 tttcaccaac catgccccag ataaaggtat aagctttggt tccgacgccg gaatggatcg
    19741 accagctcgg ggagatcacc gcctgctcgt tatgcatcac aatgtgacgc gtttcttgcg
    19801 gttgccccat catgtggaaa acgcaggcgt catcatccat attgaaatag aaataaactt
    19861 ccatccggcg ctcgtgggtg tgacacggca tggtgttcca caagttacct ggagccagct
    19921 ccgtcagccc catactcaat tggcaggttt ccagcacatc cgggacaaaa tatttgttaa
    19981 tagtgcgacg gttactggtg aggttatcgc ctaacgtgac tggagatact tcgtccgggg
    20041 tgactttttt ggtgggatac gtcgtatgcg cgggtgcgca attgtaataa aactttgccg
    20101 gagtggcggt atcaatactg gcaaagacaa cttcttttgc acctttacca acatacaggg
    20161 cgtcgcggtg accgatttca tagcattggc catcgacagt aatcgtaccg gcaccgccaa
    20221 tattgataac acctaactcg cgacgttcaa ggaaatagct tacgccgagt tgtttaccaa
    20281 cttccccgcc aacggaaacc gttttagtta tcggcataat gccgccaaca ataattcggt
    20341 caatgtggct gtaaaccatg gtgtactcat cggcgacaaa taccttttca accaaaaatt
    20401 cattgtgcag cccttgggta tccagcgttt ttgcgtgcgc actgtggatg ctctgtctta
    20461 cgtccacatc aacctccgat aatcagtgaa gcgtgaaaat agaaaacgat agtgaaacac
    20521 tgtttcgttt tctctataaa gggatgatat gcccatgggc tagggttttc aattaaaaat
    20581 aaaacaatgt tttattttta agttaaggat taaaaaaagt gcagtgtcga tcacgaatat
    20641 gtcatgagaa tggaaaaatg agggagccca gaaaatgtat gtcgacttgc cagccatcat
    20701 tattcaacag attaatgacg gcagatattt atcggtaagg aggaaatgca gagctactcg
    20761 tcacgttcaa tggtcaatgc cacgccctgg cccccgccga tacaaagcgt tgccagccct
    20821 ttgcgggcat tacgtttcac catttcatga accagagaaa ccaggattcg gcaaccggaa
    20881 gcgcctatcg ggtgaccgag tgcgatcgcg ccaccattga cattgacccg acgctcatcc
    20941 cactcaagca tcttgccaac cgaaagcgcc tgtgcagcaa acgcttcatt agcctcgata
    21001 agatcgacat cagccaactg ccagcctaca cgctccaggc aacggcgggt cgcatacacc
    21061 ggcgcaattc ccatcaatgc cggatctaca ccaacgctgg caaatgcgcg gatgcgggcc
    21121 agcacgggta aattcaacgc tcgtgctttg gcttcgctca tcatcattac cgcagctgcg
    21181 ccatcgttta tggatgatgc attccccgcg gtcacagaac cgagactatc aaatgaagga
    21241 tttaaacggg ctaaaccttc tgcactggcg tcagtgcatg gctgttcatc ggtatcaaca
    21301 accaacgtct gaccgttact ttggatcatt accgggacga tctcatcttt aaatcgtccg
    21361 gcgtcaatcg ccgctcgcgc tttttgttgc gagctaagtg cgtaagcatc ctgcaactga
    21421 cggctgatgc catattcgcg agccagattt tcggcggtga caccaatatg ataatcattg
    21481 aaggcatccc acaacccatc atgcaccaga ctgtcaacca actggctatt gccaagctgt
    21541 gcaccggtgc ggctatcagt cagaacatgt ggtgcgcggc tcatgttttc ctggccaccg
    21601 gcgatgacaa tatcagcctc gccacactgt atcgcctgag tagccagatg cagtgcttta
    21661 agcccagaac cgcaaacgtc attaatagtg attgcagaaa cgctattagg aagaccacct
    21721 ttaatagccg attgccttgc cggattctgc cctgcccctg cagtcaacac ctgaccaaga
    21781 attacttcat ccaccgcata tgcaggaacg ccggtacgtt ctattaacgc tttcacgacc
    21841 aaactaccaa gttccacggc ggaatgaccc gctaacgcac cacgaaagca gccgataggt
    21901 gtccgtaacg ccccgacaat cacaacgtct ttcatcacaa cctcgcacca attaacagtg
    21961 caatagtaaa tgattgttaa ttacagttat cttaattgtt taaaaaaagt gatttttatc
    22021 acaaaagaaa tatgcctgag cagcagtcag agacataact ggcacgtaag gtttgcaacc
    22081 actaacccac caatagaggg gtagataggg cgttaatctc ccatacttaa cctggtttat
    22141 ggtaaattgc cctccatttt gtttaatttg tagatgatac gttcagataa tgtctaatat
    22201 ttggtctaaa gaagaaactc tgtggagttt cgcgctctac ggcacagccg ttggtgcagg
    22261 cacgctcttc cttcctattc agttaggttc ggcaggggct gtggtcctgt ttattactgc
    22321 tctggtcgcc tggcctttaa catattggcc acataaagct ttatgccagt tcatcctctc
    22381 atcgaaaaca tcagcaggtg aagggataac gggcgcggta acacactact atggcaagaa
    22441 gattggtaat ctgattacca cgctgtactt catcgccttt tttgtcgtcg tgttgatata
    22501 tgcagtggca attaccaact cacttacaga acagctggca aagcatatgg ttattgatct
    22561 tcgcatccgt atgttggtga gtctgggt
//
LOCUS       DADMJB010000056        22466 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.056, whole genome shotgun sequence.
ACCESSION   DADMJB010000056 DADMJB010000000
VERSION     DADMJB010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22466)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22466)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22466
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.056"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            53..244
                     /locus_tag="JN078_001911"
     CDS             53..244
                     /locus_tag="JN078_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HAY9041133.1"
                     /translation="MKYGKLGYIVPRPQKIRGRWLIDRRAVFVGPGETGIAPEIHTGD
                     DDALKEILTHVTEATKKQH"
     gene            213..1319
                     /locus_tag="JN078_001912"
     CDS             213..1319
                     /locus_tag="JN078_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HAY9041134.1"
                     /translation="MSPRPRKNSTDVAGLYEKFDRRTGRVYYQYKNPVTGKFHGLGTD
                     KGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRRGIRLKAWVDRYLKIQDTRLKN
                     GDIAATTHKEKTRMAAYLVSRLGNHPLKELEVRDFALILDEWLDKDMVSTARVNRGLW
                     VDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRARLTMEDWQKIYNATPEKHFIRNAML
                     LAIVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTLRCDAIGITLKEVIDGC
                     RDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGIIPPAGKTPPTFHEQRSLSE
                     RLYRAQGIDTKTLLGHKVQATTDRYNDTRGQEWV"
     gene            1499..2293
                     /gene="potC"
                     /locus_tag="JN078_001913"
     CDS             1499..2293
                     /gene="potC"
                     /locus_tag="JN078_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotC"
                     /protein_id="HAY9041135.1"
                     /translation="MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTT
                     KWYSLLMNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKPFVSGMLFV
                     VMISPDIVMAISLLVLFMLLGIQLGFWSLLFSHITFCLPFVVVTVYSRLKGFDVRMLE
                     AAKDLGASEFTILRKIILPLAMPAVAAGWVLSFTLSMDDVVVSSFVTGPSYEILPLKI
                     YSMVKVGVSPEVNALATILLVLSLVMVIASQLIARDKTKGNTGDVK"
     gene            2290..3336
                     /gene="potD"
                     /locus_tag="JN078_001914"
     CDS             2290..3336
                     /gene="potD"
                     /locus_tag="JN078_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein PotD"
                     /protein_id="HAY9041136.1"
                     /translation="MKKWSRHLLAAGALALGMSAAHADDNNTLYFYNWTEYVPPGLLE
                     QFTKETCIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKS
                     KLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPEYK
                     GSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPY
                     MEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLIN
                     FLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDKTLYPDAETIKNGEWQNDVGAAS
                     SIYEEYYQKLKAGR"
     gene            complement(3492..4313)
                     /gene="cobB"
                     /locus_tag="JN078_001915"
     CDS             complement(3492..4313)
                     /gene="cobB"
                     /locus_tag="JN078_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent protein deacylase"
                     /protein_id="HAY9041137.1"
                     /translation="MLSRRGHRLSRFRKNKRRLRERLRQRIFFRDKVVPEAMEKPRVL
                     VLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQP
                     KIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQ
                     VLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGH
                     VYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLLKGL"
     gene            complement(4329..5240)
                     /gene="nagK"
                     /locus_tag="JN078_001916"
     CDS             complement(4329..5240)
                     /gene="nagK"
                     /locus_tag="JN078_001916"
                     /EC_number="2.7.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine kinase"
                     /protein_id="HAY9041138.1"
                     /translation="MYYGFDIGGTKIALGVFDSGRQLQWEKRVPTPRDSYDAFLDAVC
                     ELVAEADQRFGCRGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRL
                     DNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLIFNGKPITGKSYITGEFGHMRL
                     PVDALTMMGLDFPLRRCGCGQHGCIENYLSGRGFAWLYQHYYHQQLQAPEIIALYNQG
                     DEQARAHVERYLDLLAVCLGNILTIVDPDLVVIGGGLSNFPAITTQLADRLPRHLLPV
                     ARVPRIERARHGDAGGMRGAAFLHLTD"
     gene            complement(5269..6513)
                     /gene="lolE"
                     /locus_tag="JN078_001917"
     CDS             complement(5269..6513)
                     /gene="lolE"
                     /locus_tag="JN078_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolE"
                     /protein_id="HAY9041139.1"
                     /translation="MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVG
                     LSAMNGFERELNNRILAVVPHGEIEAVNQPWTNWQEALDKVQKVPGIAAAAPYINFTG
                     LVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKV
                     KQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMG
                     SSVSGIALKMTDVFNANKLVRDAGEMTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAM
                     VLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCG
                     LIIGVVVSLQLTPIIERIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSL
                     LASWYPARRASNIDPARVLSGQ"
     gene            complement(6513..7214)
                     /gene="lolD"
                     /locus_tag="JN078_001918"
     CDS             complement(6513..7214)
                     /gene="lolD"
                     /locus_tag="JN078_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309522.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HAY9041140.1"
                     /translation="MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSVGEGEMMAIVGSS
                     GSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF
                     TALENVAMPLLIGKKKPAEINSRALEMLKAVGLEHRANHRPSELSGGERQRVAIARAL
                     VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM
                     RDGRLTAELSLMGAE"
     gene            complement(7207..8406)
                     /gene="lolC"
                     /locus_tag="JN078_001919"
     CDS             complement(7207..8406)
                     /gene="lolC"
                     /locus_tag="JN078_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004976588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolC"
                     /protein_id="HAY9041141.1"
                     /translation="MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTV
                     LSVMNGFERELQNNILGLMPQAILSSEHGSINPQQLPETAVKLDGVNRVAPITTGDVV
                     LQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGD
                     QIRMMVPSASQFTPMGRIPSQRLFNVIGTFAANSEVDGNEMLVNIEDASRLMRYPAGN
                     ITGWRLWLDEPLKVDSLSQQKLPEDSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVA
                     VAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMIFMVQGASAGIIGAILGAALGA
                     LLASQLNNLMPIIGVLLDGAALPMAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQP
                     AEALRYE"
     gene            8668..9741
                     /locus_tag="JN078_001920"
     CDS             8668..9741
                     /locus_tag="JN078_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HAY9041142.1"
                     /translation="MKQKELWINQIKGLCICPVVIYHSVITFYPHMTTFPHPLSEVLS
                     KCWIYFNLYLAPFRMPVFFFISGYLIRRYIDSVPWGNCLDKRIWNIFWVLALWGVVQW
                     LALSALNQWLAPERDLSNASNAAYADSTGEFLHGMITASTSLWYLYALIVYFVVCKIF
                     SRLALPLFALFVLLSVAVNFVPTPWWGMNSVIRNLPYYSLGAWFGATIMTCVKEVPLR
                     RHLLMASLLTVLAVGAWLFTISLLLSLVSIVVIMKLFYQYEQRFGMRSTSLLNVIGSN
                     TIAIYTTHRILVEIFSLTLLAQMNAARWSPQVELTLLLVYPFVSLFICTVAGLLVRKL
                     SQRAFSDLLFSPPSLPAAVSYSR"
     gene            9869..13315
                     /gene="mfd"
                     /locus_tag="JN078_001921"
     CDS             9869..13315
                     /gene="mfd"
                     /locus_tag="JN078_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HAY9041143.1"
                     /translation="MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVL
                     IAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ
                     RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHG
                     EYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFP
                     TDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF
                     PANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNW
                     PRVQLKTKHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESE
                     GRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDKVRNLALICESDLL
                     GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEY
                     LMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAA
                     ELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDR
                     LVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEM
                     ISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKE
                     RIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVV
                     REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND
                     FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL
                     LTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF
                     SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI
                     ASAKTENELEEIKVELIDRFGLLPDPARTLLDVARLRQQAQKLGIRKLEGNEKGGVIE
                     FAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENA
                     IA"
     gene            13459..14421
                     /gene="ldtC"
                     /locus_tag="JN078_001922"
     CDS             13459..14421
                     /gene="ldtC"
                     /locus_tag="JN078_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase LdtC"
                     /protein_id="HAY9041144.1"
                     /translation="MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGEN
                     KFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPRE
                     GIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTAN
                     TRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCI
                     RLRDDDIKTLFSQVTPGTKVNIINTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPI
                     TLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL"
     gene            complement(14504..14761)
                     /gene="bhsA"
                     /locus_tag="JN078_001923"
     CDS             complement(14504..14761)
                     /gene="bhsA"
                     /locus_tag="JN078_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiple stress resistance protein BhsA"
                     /protein_id="HAY9041145.1"
                     /translation="MKNVKTLIAAAILSSMSFASFAAVEVQSTPEGQQKVGTISAKAG
                     TNLGSLEEQLAQKADEMGAKSFRITSVTGPNTLHGTAVIYK"
     gene            15002..15634
                     /gene="comR"
                     /locus_tag="JN078_001924"
     CDS             15002..15634
                     /gene="comR"
                     /locus_tag="JN078_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family copper-responsive transcriptional
                     repressor ComR"
                     /protein_id="HAY9041146.1"
                     /translation="MATDSTQCVKKSRGRPKVFDRDAALDKAMKLFWQHGYEATSLAD
                     LVEATGAKAPTLYAEFTNKEGLFRAVLDRYIDRFAAKHEAQLFCEEKSVESALADYFA
                     AIANCFTSKDTPAGCFMINNCTTLSPDSGDIANTLKSRHAMQERTLQQFLCQRQARGE
                     IPTHCDVTHLAEFLNCIIQGMSISAREGASLEKLMQIAGTTLRLWPELVK"
     gene            complement(15696..16235)
                     /locus_tag="JN078_001925"
     CDS             complement(15696..16235)
                     /locus_tag="JN078_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HAY9041147.1"
                     /translation="MNKSMLAGIGIGVAAALGVAAVASLNVFERGPQYAQVVSATPIK
                     ETVKTPRQECRNVTVTHRRPVQDENRITGSVLGAVAGGVIGHQFGGGRGKDVATVVGA
                     LGGGYAGNQIQGSLQESDTYTTTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDRD
                     PGTQIPLDSNGQLILNNKV"
     gene            complement(16462..17766)
                     /locus_tag="JN078_001926"
     CDS             complement(16462..17766)
                     /locus_tag="JN078_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HAY9041148.1"
                     /translation="MTTPLKKIVIVGGGAGGLEMATQLGHKLGRKKKAKITLVDRNHS
                     HLWKPLLHEVATGSLDEGVDALSYLAHARNHGFQFQLGSVIDIDREAKTITIAELRDE
                     KGELLVPERKIAYDTLVMALGSTSNDFNTPGVKENCIFLDNPHQARRFHQEMLNLFLK
                     YSANLGANGKVNIAIVGGGATGVELSAELHNAVKQLHSYGYKGLTNEALNVTLVEAGE
                     RILPALPPRISAAAHSELTKLGVRVLTQTMVTSADEGGLHTKDGEYIEADLMVWAAGI
                     KAPDFLKDIGGLETNRINQLVVEPTLQTTHDPDIYAIGDCASCTRPEGGFVPPRAQAA
                     HQMATCAMNNILAQINGKPLKNYQYKDHGSLVSLSNFSTVGSLMGNLTRGSMMIEGRI
                     ARFVYISLYRMHQIALHGYFKTGLMMLVGSINRVIRPRLKLH"
     gene            complement(18166..18708)
                     /locus_tag="JN078_001927"
     CDS             complement(18166..18708)
                     /locus_tag="JN078_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAY9041149.1"
                     /translation="MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQ
                     HLLKEVDKMLQLNVDERPLICGVGLGGYWAERIGFLCDIRQVIFNPNLFPYENMEGKI
                     DRPEEYADIATKCVTNFREKNRDRCLVILSRNDEALNSQRTSEELHHYYEIVWDEEQT
                     HKFKNISPHLQRIKAFKTLG"
     gene            complement(18731..19756)
                     /gene="nagZ"
                     /locus_tag="JN078_001928"
     CDS             complement(18731..19756)
                     /gene="nagZ"
                     /locus_tag="JN078_001928"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HAY9041150.1"
                     /translation="MGPVMLDVEGYELDAEEREILAHPLVGGLILFTRNYHDPAQLRE
                     LVRQIRAASRNHLVVAVDQEGGRVQRFREGFTRLPAAQSFAALLGMEEGGKLAQEAGW
                     LMASEMIAMDIDISFAPVLDVGHISAAIGERSYHADPEKALAIASRFIDGMHEAGMKT
                     TGKHFPGHGAVTADSHKETPCDPRPQAEIRAKDMSVFSTLIRENKLDAIMPAHVIYSD
                     VDPRPASGSSYWLKTVLRQELCFDGVIFSDDLSMEGAAIMGSYAERGQASLDAGCDMI
                     LVCNNRKGAVSVLDNLSPIKAERVTRLYHKGSFSRQELMDSARWKASSTRLNQLHERW
                     QEEKAGH"
     gene            complement(19767..20591)
                     /gene="thiK"
                     /locus_tag="JN078_001929"
     CDS             complement(19767..20591)
                     /gene="thiK"
                     /locus_tag="JN078_001929"
                     /EC_number="2.7.1.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine kinase"
                     /protein_id="HAY9041151.1"
                     /translation="MPFRSNNPITRDELLSRFFPQFHPVTTFNSGLSGGSFLIEHQGQ
                     RFVVRQPHDPDAPQSAFLRQYRALSQLPASIAPKPHLYLRDWMVVDYLPGAVKTYLPD
                     TNELAGLLYYLHQQPRFGWRITLLPLLELYWQQSDPARRTVGWLRMLKRLRKAREPRP
                     LRLSPLHMDVHAGNLVHSASGLKLIDWEYAGDGDTALELAAVWVENTEQHRQLVNDYA
                     TRAKIYPAQLWRQVRRWFPWLLMLKAGWFEYRWRQTGDQQFIRLADDTWRQLLIKQ"
     gene            complement(20575..21213)
                     /gene="lpoB"
                     /locus_tag="JN078_001930"
     CDS             complement(20575..21213)
                     /gene="lpoB"
                     /locus_tag="JN078_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HAY9041152.1"
                     /translation="MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQ
                     PVPTVPSVPTIPQQPGPIEHEDRTAPPAPHIRHYDWNGAMQPIVSKMLGADGVTAGSV
                     LLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGT
                     RSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQ"
     gene            complement(21227..21604)
                     /locus_tag="JN078_001931"
     CDS             complement(21227..21604)
                     /locus_tag="JN078_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HAY9041153.1"
                     /translation="MRKGCFGLVSLVLLLLVGCRSHPEIPVNDEQSLVMESSLLAAGI
                     SAEKPVLSTSDIQPSASSTLYNERQKPVTVHYRFYWYDARGLEMHPLERPRSVTIPAH
                     SAVTLYGSANFLGAHKVRLYLYL"
     gene            complement(21607..21966)
                     /gene="hinT"
                     /locus_tag="JN078_001932"
     CDS             complement(21607..21966)
                     /gene="hinT"
                     /locus_tag="JN078_001932"
                     /EC_number="3.9.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415621.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine nucleoside phosphoramidase"
                     /protein_id="HAY9041154.1"
                     /translation="MAEETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIP
                     NILIPTVNDVSAEHEQALGRMITVVAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHM
                     HLLGGRPLGPMLAHKGL"
BASE COUNT         5601 a         5898 c         5574 g         5393 t
ORIGIN      
        1 cgacgagtgg aaaccaaaac ggttcagtct cccaataaca aacactaccc tggtgaaata
       61 cggaaaacta ggatacatcg ttccaagacc acaaaaaatt cgtgggcgtt ggctgataga
      121 tcgccgagca gtatttgttg ggccaggtga aacgggaatt gcgccggaaa ttcatactgg
      181 cgatgatgat gcactgaagg agattttaac tcatgtcacc gaggccacga aaaaacagca
      241 ctgacgtagc cggtctttac gaaaagtttg atcgcagaac tggcagagtt tactaccagt
      301 ataaaaatcc tgtgactgga aaatttcacg gactcggaac agacaaaggt aaggcagaaa
      361 aaatcgcttc cacagccaat cagcgaatag ctgcagcaga agctgaatat ttcatgcgca
      421 aaattgatga aagtccgtca gcaacaaaac gtcggggtat cagattaaag gcatgggttg
      481 atcgatatct gaaaatacag gacacgcgac tgaaaaatgg agatattgca gctacaactc
      541 acaaagaaaa aactcgaatg gctgcatacc tggtttcccg tctgggaaac cacccattga
      601 aagaactgga agtaagagac tttgcattaa tactggatga gtggctggat aaagacatgg
      661 tcagcacagc gagagtaaat cgtggattat gggttgatat ttataaagaa gcacagcatg
      721 caggggaagt tcctcctgga tggaatcctc cggaggctac ccgtaaaccg atccctaaag
      781 taaccagagc caggctcacc atggaagact ggcaaaaaat ttacaatgca acgcctgaaa
      841 aacactttat ccgtaacgca atgcttcttg cgattgttac tggtcagcgc cgtgatgaca
      901 tttgccacat gcgtttttca gatgtgtgga acgaacactt gcatatcacc cagggaaaaa
      961 ccggaatgcg tctggcgtta ccgcttacac tacgctgtga tgccattggg ataacgttaa
     1021 aagaagttat tgatgggtgc cgagacagaa tattaagtcc atatctaatc catagtcggc
     1081 accagaaaca accgaagccg atgagtaaag acaacctgag cgactacttt gccaaagcac
     1141 gggatctggc tgggataatt ccaccagcag gaaaaactcc gccaacattt catgaacaac
     1201 gctctctatc agaacggctg taccgtgcac agggtatcga tacaaaaaca ttactaggac
     1261 ataaagtcca ggcaaccacc gatcgctata acgatactcg aggtcaggaa tgggtttaag
     1321 ctggttattt gacaaacacc atatggaata tccgtcacca tctcaggaaa aaagtgttgt
     1381 aaaatgcgtg gcctagtttt ggggaaacgt tttggagaga ttttggagaa aggaaaaaat
     1441 tgaataaatt caaaatcctg aaagtgctcc accttatgaa taagaaggtg gaactcgaat
     1501 gatcggtcga ctgcttcgcg gcggttttat gaccgctatc tacgcgtacc tgtatatccc
     1561 aatcattatt ttgattgtga actcctttaa cagctcgcgc tttggcatca actggcaggg
     1621 ttttaccacc aaatggtata gcctgctgat gaacaacgac agcctgttac aggcagcgca
     1681 gcattcacta acaatggcgg tgttttcggc gacgtttgct acgcttatcg gttcactgac
     1741 ggcagttgcg ctgtaccgtt atcgctttcg cggtaagccg ttcgttagcg gaatgctgtt
     1801 tgtggtaatg atatcaccag atatcgtgat ggcaatttcg ctgctggtgc tgtttatgct
     1861 gctgggtatt cagcttggct tctggtcgct gctgttctcg catatcacct tctgcctgcc
     1921 atttgtggtg gtgacggtgt attcgcgcct gaaaggtttt gacgtgcgga tgctggaagc
     1981 ggcgaaagat ctcggtgcca gcgaatttac aattctgcga aaaatcatac tgccactggc
     2041 aatgccagcg gtggcagcgg gctgggtgtt aagctttacc ctgtcgatgg acgatgtggt
     2101 agtttcttcg ttcgtcaccg gaccaagtta tgaaattctg ccgttaaaaa tttattcgat
     2161 ggtcaaagtc ggcgtatcgc cggaagttaa cgcgctggca accatattac tggtgctgtc
     2221 gctggtgatg gttattgcca gtcagcttat tgctcgtgat aaaacgaaag gtaacacagg
     2281 ggacgttaaa tgaaaaaatg gtcacgccac ctgctcgcgg cgggtgctct ggcactgggc
     2341 atgagcgccg ctcacgccga tgacaacaac acgctgtatt tctacaactg gaccgagtac
     2401 gtgccgccag gactgcttga acagttcacc aaagaaacct gtattaaggt tatctattcg
     2461 acttacgagt cgaacgaaac catgtacgcc aagctgaaaa cgtacaaaga cggtgcgtat
     2521 gacctggtgg ttccttcaac ctattacgtc gataaaatgc gtaaagaagg gatgatccag
     2581 aagatcgaca agtcgaagtt aacgaacttc agcaatctcg atccagacat gctcaacaag
     2641 ccttttgacc cgaataacga ctactccatt ccgtatatct ggggggcgac ggcgattggt
     2701 gttaacggtg atgcggtgga tccgaaatct gtcaccagct gggccgatct gtggaagcca
     2761 gagtacaaag gcagcctgct gttgaccgac gatgcccgtg aagtgttcca gatggcgctg
     2821 cgtaagctgg gctattccgg taacaccacc gatccgaaag agattgaagc tgcatataac
     2881 gagctgaaaa aactgatgcc aaacgtcgca gcgtttaact ccgataaccc ggctaacccg
     2941 tacatggaag gcgaagttaa cctcggcatg atctggaacg gttctgcttt cgttgcacgc
     3001 caggcgggta cgcctattga cgtggtgtgg ccgaaagaag gcggcatatt ctggatggac
     3061 agcctggcga tcccggcaaa tgccaaaaac aaagaaggcg cgctgaaatt gatcaacttc
     3121 ctgctgcgcc cggatgtggc aaaacaggtt gctgaaacta tcggttatcc aacgccaaac
     3181 cttgcggcgc gtaagctgtt aagtccagaa gtggcgaacg ataaaacgct ctacccggat
     3241 gctgaaacca ttaaaaatgg cgaatggcag aatgacgttg gcgcagccag cagcatttat
     3301 gaagagtatt atcagaagct gaaagcagga cgttaattca gcaagcgggc ggtggtatta
     3361 ccgcccgttt tttatttagc aaggatgtgg ctaatgagtc aggacagtag agttttatcc
     3421 gactctttcg tcggtattgt ggtccgctcg taggcctgat aagcgtagcg catcaggcaa
     3481 tgcttcctgc tttataatcc cttcagcaac ttttcaacaa actcaggcac cacctggctt
     3541 gccgggccgt aatatttctc ggcaaattca ttaccgacct gacttggttc gagattcagt
     3601 tccacggtgt gcgcgccatg cagtttcgct tcgtgaacaa acccagccgc cggataaaca
     3661 tgcccggaag taccaatggc aatgaaaata tcagccatcg acaacgccat ataaatttca
     3721 tccatgccga gtggcatttc gccaaaccaa acgacgtgcg ggcgcaaggg tgccgggaac
     3781 tggcaacaat ggcatttatc ttctggcgta acgtctccgg tccagtcgag aacctgacca
     3841 ctttgcgaac aacgaacttt cagcaattcc ccatgcatat gaatgacatt ggtattacct
     3901 gcgcgttcat gcaggttgtc tatattctgc gttaccagca aaaagcgatc gccgagagcg
     3961 tcttgcagtt tagccagcgc aagatgcgcg gcgttaggct gaatttttgg ctgctgcagc
     4021 tgtcgacgac gggcgttata aaacgcttgc accagttcag gatcgcgatc gaaaccttcc
     4081 ggcgttgcca catcttcaac ccgatgttct tcccacaggc catctgcggc gcgaaaggta
     4141 cgaatacctg attccgcaga aattcctgcc cctgtcagta cgagtactct tggtttttcc
     4201 attgcttccg gcaccacttt atctctgaaa aaaatacgct gacgcaaacg ctcgcgcagg
     4261 cggcgtttat ttttacgaaa acgacttaac cgatgacccc gacgcgacag catagcaacc
     4321 tctgttgttt aatcggttag atgtaggaag gccgcaccac gcattcctcc cgcatcaccg
     4381 tggcgcgcgc gttcaatgcg cggaacacga gctacaggta agagatgacg aggcagcctg
     4441 tccgccagtt gcgttgtgat tgccgggaaa ttcgataagc caccaccaat gacgaccagg
     4501 tcagggtcaa caatggtcag gatatttccc agacaaaccg ctaataaatc cagataacgc
     4561 tcaacgtgcg cccttgcctg ctcatcgcct tgattataaa gcgcaataat ttcgggagcc
     4621 tgcaactgtt gatgataata gtgttgatac agccacgcaa aaccgcgacc agacagataa
     4681 ttctcaatgc agccatgctg accacagccg cagcggcgta acgggaaatc caaccccatc
     4741 atggttaacg catcaaccgg cagacgcata tggccaaact cgccggtaat gtagctttta
     4801 ccggtaatcg gtttgccgtt gaaaatcagc ccaccgccaa cgccggtacc aagaatcaac
     4861 cccatcacca gtggatattg cgtaaattca tcatcccagg cttctgaaag ggcaaaacag
     4921 ttggcatcgt tatcaaggcg tacatcgcga tcaagacgtg cgctcaggtc ggcacgcagc
     4981 ggtttaccgc tggcagcggg gacattggcg gcatacagcg taccatcttc tgtttccggc
     5041 attcccggta taccaatgcc gacagaacct ctacagccaa aacgttgatc agcttcggct
     5101 accagctcgc acactgcatc taaaaatgcg tcatagctgt cacgcggtgt cggcacccgc
     5161 ttttcccact gcaactgccg accgctatca aacacgccaa gcgcaatttt tgttccacca
     5221 atatcaaacc cgtaatacat tgccgctcct tgttttaatg tactgccttt actggccgct
     5281 aaggactcgc gcagggtcaa tattactggc gcgccgcgcc ggataccaac ttgccaaaag
     5341 actcagcaac aatgctgtga ccagtacgta gaagacgtcc agccagtgca attccgatgg
     5401 caggaagtca ataaaataga tatcgctgga gaggaactga tgaccgatca gcttttcaat
     5461 ccgctcaata atcggggtaa gttgcagtga aacaactacg ccgataatca gcccacacag
     5521 gctgccgaac agccctgcca gcaatccata ccagacaaag atggcgcgaa ttaaaccatc
     5581 tttcgccccc agcgttctta atactgcgat atcgccactc ttatctttca ccgccatcac
     5641 taaggtggag acgatgttga aacaggccac gccaatcacc agtaccatcg ccagatacat
     5701 aatggcgcgg atcatctgga tatcgcgata catatagccg taagtaccaa tccagctttt
     5761 aatataaaca tagctgttgg tcatttcacc cgcatcgcgt accagcttat tggcgttgaa
     5821 aacatccgtc attttaaggg caatacctga cacgctggaa cccatatcaa gatattgttg
     5881 ggcatccgcc agcgggatca tggcaaaact gtgatcgagt tggccactca actgcaaaat
     5941 acccgcaacg tgcaaacgca cacgttttgg ctgcatcagt ttatgctcag gattcgagtt
     6001 ggggatcatg atcgacaccc aatcgccctg cttcactttc agcgcatccg ccacgccttt
     6061 gccgatgata atttgctgtt cgcccgcttt aaaattgcgc cacgcatccc cctgaacaaa
     6121 cgagggtaat gcgctcagac gctgttcctg ttgtgggtta acgcccttca cctggattgc
     6181 gcgcagattc gctccacttt ccaccagccc ggtgaaattg atatacggcg cagcggcggc
     6241 aatacccggc actttctgca ctttatccag tgcttcctgc cagttagtcc atggctgatt
     6301 taccgcttcg atttcaccat gcggcaccac cgccagaatg cggttattca gttcgcgttc
     6361 aaagccgttc atcgcgctta agccgacgat caataccgcc acaccgaggg caatgccaat
     6421 ggtagaaatg acggagatca gcgacaccat gccgccgcgc cgccgtccgc gactaaaacg
     6481 caggccaatt aataacgata aaggcatcgc cattactccg cccccatcag gctcagttcc
     6541 gccgtcagac gtccatcacg catttctaac tggcggctca tacgtttcgc cagttgcagg
     6601 tcgtgagtaa ccaccaggaa ggcggtgccc tgcaagcgat tcaattcccc aagcaactgg
     6661 aagatgctgt cggcgttacg cgcatcgagg ttaccggtag gctcatccgc cagtaccaga
     6721 cgcggattat tgaccagcgc acgggcaatc gctacacgct ggcgttcgcc gccagaaagt
     6781 tcagatgggc ggtgattcgc acgatgctcc agccccaccg cttttaacat ctccagtgca
     6841 cggctgttga tttcagcggg ctttttcttg ccaatcagca gcggcatagc cacgttttcc
     6901 agggcggtaa aatccggcag caggtggtga aactgataaa taaagcccag tttctggttg
     6961 cgcagttctg cttttgctgc cgacgacagt ttgctcatcg gttgaccgtt aaagatcaca
     7021 tcgccggagg ttggcgtatc cagtccgccc agcaggtgca gcaaggtgct tttaccggaa
     7081 ccagagctac cgacgatcgc catcatttca ccttcgccga cgctgaaact gacattgtgc
     7141 agtacatcgg tttgcacact gccttcctga tagcgtttgc acaggttgtc gcattgcaac
     7201 aggatcttat tcataacgta aagcctcagc gggttgtgtg gcggcagcgc gccatgaagg
     7261 gtaaagcgta gacagcagcg cgatagccat cgccaccagc gcaataacaa tgacctgtaa
     7321 aggttcgata gccatcggca gcgccgcgcc atcaagcagg acgccgatta ttggcatcag
     7381 attatttaac tggctggcaa gcagtgcgcc aagcgccgct ccgaggatcg caccgataat
     7441 cccggcgctg gccccttgca ccataaagat catcatgatt tgtcgcggag ttaagccttg
     7501 cgtttgcagg atcgctactt cgccctgctt ctccatcacc atcagcccca gcgaggtaat
     7561 aatgttaaac gccgcaacgg cgacaatcag gctcagcagt aaacccatca tatttttttc
     7621 catgcgtacg gcctggaaca actcgccttt acgatcacgc cagtcctgcc atttgctgtc
     7681 ttcaggcagt ttttgctgac ttaatgagtc gactttcagc ggctcatcca gccacaaacg
     7741 ccagccggta atattgcctg ccggataacg catcagacgc gaggcatcct caatattcac
     7801 cagcatttca ttgccatcga cttcactgtt ggcggcgaaa gtgccaatca cattgaacag
     7861 gcgctgactt ggaatacgcc ccatcggcgt gaactggctg gcagatggta ccatcatgcg
     7921 gatttgatca ccgcgattaa cgcctagctg tgaggcaagt tgttcgccga ggatgacatt
     7981 atatttcccc ggctcgaggt cagtttgttt cacattgacc agatacggcg ttagtggatc
     8041 tttttgcgcc ggatcgatac ccagcatcac cccgaccgcc acgctgcgcg cgctttgcag
     8101 taccacatca ccggtagtaa taggtgcgac gcgattaacg ccgtccagtt tgactgccgt
     8161 ttccgggagt tgctgcgggt taatagagcc atgctcagaa gagagaattg cctgtggcat
     8221 caggccaagg atgttgtttt gcagctcgcg ctcaaagccg ttcatcactg acaatactgt
     8281 gaccagcgcc atcaccccga gggtaatgcc gatggtagaa agccaggaga cgaaacgacc
     8341 gaagcgatcc gctgcacgcc cacgcatgta acgcaggcca ataaatagag cgacaggttg
     8401 gtacatgaaa tccgtctggt tgctgtagca aagacacgag tatataagcg aaagcaagat
     8461 gggtaaacgt ctgaactgta agtgatcgtc agggctaatc tgaaaagccc ccgtaaatca
     8521 atcggctaaa ttgccatgtt ttatcatcaa tcttgccgcc tgatcttaat ctgaaaaatc
     8581 atccaataca gacagatacc cattacacct cgggtcataa cccgcaggat caaccgcatg
     8641 taaattaaaa aagagcgtgt tgtcctgatg aaacaaaaag agctatggat taaccagatc
     8701 aaagggttat gtatttgtcc ggtggtgatt tatcactcgg tcattacctt ttatccgcat
     8761 atgaccactt ttccgcatcc gttatcggaa gtcctgagca aatgctggat ctatttcaat
     8821 ctttaccttg caccctttcg tatgccggtt tttttcttta tatccggcta tttgattcgc
     8881 cgctatatcg acagcgtacc gtggggaaat tgtctcgata aacggatctg gaacatcttc
     8941 tgggtgctgg cgctttgggg cgtggtgcag tggctggcgt taagtgcgct gaaccagtgg
     9001 ctggcacctg agcgcgattt aagcaatgcc tccaatgccg cttatgccga ttccaccggt
     9061 gagttcctgc acgggatgat caccgccagc accagcttgt ggtatctgta tgcgttaatt
     9121 gtctatttcg tggtatgtaa aatttttagc cgtctggcgc tgccactatt cgccttgttt
     9181 gtactgctga gtgtggcggt taatttcgtt cccacgccgt ggtggggaat gaacagtgtg
     9241 atccgcaatt tgccttatta cagccttggc gcatggtttg gcgcaacaat aatgacctgt
     9301 gttaaagagg taccgttgcg ccgccatctg ctgatggctt ctttgcttac cgttctggcg
     9361 gtcggtgcct ggttgtttac tatctcgctg ctgttgtcgc tggtatcgat tgtggtgatc
     9421 atgaagctgt tttatcagta cgagcaacga ttcggtatgc gctccaccag cctgctgaat
     9481 gtgattggct ccaacaccat tgctatctac accacccatc gcattctggt tgaaatattc
     9541 agcttaactc tgcttgcgca aatgaacgca gcacgctggt cgccgcaagt cgaactgaca
     9601 ctcctgctgg tttatccctt tgtcagtttg ttcatctgta ctgttgcggg cttgctggta
     9661 agaaaacttt cacagcgtgc attcagcgat ctgttgttct ccccgccttc actgcccgct
     9721 gccgtcagtt actcccgcta agccatcgcc ccagccgggg cgattcaatt tgctaaacca
     9781 tgtcgattac ggataatgaa cagcattgct tatcagagat atgcccccat atgttgaggc
     9841 atatcctaac gagaatctga caaccgttat gcctgaacaa tatcgttata cgctgcccgt
     9901 caaagcgggt gagcagcgtc tgctgggcga gttaaccggc gcagcctgtg caacgctggt
     9961 agcggaaatt gccgaacgtc acgccggtcc ggtggtactc attgcaccag atatgcaaaa
    10021 tgctctgcgt ttgcatgatg aaatcagtca gttcaccgat cagatggtga tgaatctggc
    10081 ggactgggaa actcttccct acgacagctt ttcgcctcat caggacatta tctcctcgcg
    10141 cctttccacc ctttaccagc taccgacgat gcagcgtggc gtactgattg ttccggtgaa
    10201 tacgcttatg cagcgcgttt gcccacacag ttttctccac ggtcatgcgc tggtgatgaa
    10261 aaaaggtcag cgcctgtcac gagatgcatt acgaacccaa ctggacagcg ccggttatcg
    10321 ccatgttgac caggtgatgg agcacggcga atacgccacg cgcggcgcgt tgctggatct
    10381 cttcccgatg gggagtgagc tgccttatcg tcttgatttc tttgatgatg aaatcgacag
    10441 cctgcgggtg tttgacgtcg acagccagcg cacgctggag gaagtagaag cgatcaatct
    10501 gctgcccgcg cacgaatttc cgaccgataa agcggcaatt gaactgttcc gcagccagtg
    10561 gcgcgatacc ttcgaagtga agcgcgatcc ggaacatatt taccagcaag tgagtaaagg
    10621 cacattacct gccgggatcg agtactggca gccattgttc ttcagcgaac cactgccgcc
    10681 gctgttcagt tatttccctg ccaatacctt gctcgtgaat actggcgatc tggaaaccag
    10741 tgccgaacgt ttccaggctg acacgctggc gcgttttgag aatcgcggcg tcgatccgat
    10801 gcgcccgctg ttgccaccac aatcgctctg gctgcgggtg gacgagctct tctcagagct
    10861 gaaaaactgg ccccgggtgc agctaaaaac taaacattta ccgacaaaag ccgcgaatgc
    10921 caatttaggt ttccagaaac tgccagacct agccgttcag gcgcaacaaa aagcgccgct
    10981 ggatgcgctg cgtaagttcc tcgagacttt cgacggtccg gtggtgttct cggtagaaag
    11041 tgaaggtcgc cgtgaagcgc tgggtgaact gctcgcacga attaaaattg ctccgcaacg
    11101 cattatgcgt cttgatgaag ccagcgaccg tgggcgttat ctgatgattg gcgctgccga
    11161 acatggtttt gtcgataagg tgcgtaatct ggcgctgatc tgcgaaagcg atctgctcgg
    11221 tgaacgtgtt gcccgccgtc gtcaggattc tcgccgcacc atcaaccccg atacactgat
    11281 ccgtaacctt gcggagctgc atattggtca gccggtggtc catctggagc acggtgtcgg
    11341 gcgctatgcc ggaatgacca cgctcgaagc gggcggcatt actggcgagt atttgatgct
    11401 cacctatgcc aacgacgcca aactgtatgt tccggtgtcg tcactgcatc tgattagccg
    11461 ttacgcaggt ggcgcggaag aaaacgcccc gctgcataaa cttggcggcg atgcgtggtc
    11521 acgcgcgcgg cagaaagcgg cggaaaaagt gcgtgatgtg gcggcggaat tgctggatat
    11581 ctacgcgcaa cgcgccgcca aagagggctt cgcgtttaaa cacgatcgtg agcagtatca
    11641 gttgttctgc gacagcttcc cgtttgaaac cacgccggat caggcgcagg ccattaatgc
    11701 ggtacttagc gacatgtgtc agccgctggc aatggatcgt ctggtgtgcg gcgatgttgg
    11761 ctttggtaaa acagaagtgg cgatgcgcgc cgctttcctg gcagtagata accacaagca
    11821 ggtggcggtg ttggtgccta ccacccttct cgcgcagcag cattacgaca acttccgcga
    11881 ccgtttcgcc aactggccgg tacgtatcga aatgatctcc cgtttccgca gcgccaaaga
    11941 gcagacgcaa atccttgcgg aagtggcgga agggaaaatc gatattctga tcggtacgca
    12001 caaactgctg caaagtgacg tcaagtttaa agatttaggc ctgctgattg tcgatgaaga
    12061 acaccgcttc ggggtgcgtc ataaagagcg cattaaagcg atgcgcgcga acgtggatat
    12121 tctgacgctt actgcaacgc cgatcccacg cacgctgaat atggcaatga gcggaatgcg
    12181 tgacctgtcg attatcgcca cgccgcccgc ccgtcgtctg gcagttaaaa cctttgtccg
    12241 tgagtatgac agcctggtgg tccgggaggc gatcctgcgt gaaattttgc gcggggggca
    12301 ggtttattat ctctacaatg atgtggaaaa catccagaaa gctgccgaac ggctggcaga
    12361 actggtgcca gaagcgcgga tcgccatcgg tcacgggcag atgcgcgagc gcgaactgga
    12421 acgggtgatg aatgatttcc atcatcaacg tttcaacgtg ctggtttgta caaccattat
    12481 cgaaaccggg atcgacatcc cgacagccaa caccattatc attgaacgcg cggatcactt
    12541 cggtctggcg cagctgcacc agttacgcgg tcgcgtcgga cgttcacatc atcaggcata
    12601 tgcatggctg ctgacgccgc atccaaaagc gatgactacc gatgcacaaa aacgtcttga
    12661 agcgattgcc tcgctggaag atctcggtgc aggctttgcg ctggcaacgc acgatctgga
    12721 gatccgcggc gcgggtgaac tgcttggcga agaacaaagt ggctcaatgg aaaccatcgg
    12781 tttctcgctg tatatggagt tgctggaaaa cgccgtcgat gcactgaaag ccggacgcga
    12841 gccgtcgctg gaagatctca ccagccagca aacagaagtc gagctgcgga tgccgtcgct
    12901 attgccagat gatttcattc ctgacgtgaa tacgcgtttg tcgttctata aacgtattgc
    12961 cagcgccaaa acggaaaacg aactggaaga gatcaaagtc gagcttatcg atcgcttcgg
    13021 cctgctgccg gatccggcgc gtaccctgct ggatgttgcc cgtctgcgcc agcaagcgca
    13081 gaaactgggg atcaggaagc tggaaggtaa tgagaaaggc ggggtgatcg aatttgccga
    13141 gaagaatcac gttaatccgg cctggttgat tggtttgctg caaaaacagc cgcagcatta
    13201 ccgccttgat ggtccgacgc gcctgaaatt tattcaggat ttgagtgagc ggaaaacgcg
    13261 tatcgaatgg gtacgccagt ttatgcgtga actggaagag aacgcgatcg cttaatggta
    13321 aatcgggggc gtttctgcgc ccccatcggc aacatttaca aattctttgc acttccctgc
    13381 actatccgac actgtcacca tccataattc aggcttatct gtttattaca ataaccttat
    13441 atttattatg gatttttggt gatgatcaaa acgcgttttt ctcgctggct aacgtttttt
    13501 acgttcgccg ctgccgtggc gctggcgcta ccggcaaaag ccaacacctg gccgctgccg
    13561 ccagcgggca gtcgtctggt tggcgaaaac aaatttcatg tggtggaaaa tgacggtggt
    13621 tctctggaag ccatcgccaa aaaatataac gtcggctttc tcgctctgtt acaggctaac
    13681 cccggcgttg atccttacgt accgcgcgcg ggcagcgtgt taacgatccc gttgcaaacc
    13741 ctacttccag acgcgccgcg cgaaggcatt gtgatcaaca ttgcggagct gcgtctctat
    13801 tactacccgc cgggtaaaaa ttcggtaacc gtgtatccaa taggtattgg tcagttaggt
    13861 ggtgacacgc tgacaccgac aatggtgacc accgtttcag acaaacgtgc aaacccaacc
    13921 tggacgccaa cggcaaacac ccgcgcccgt tataaagcac agggaattga gttgcctgcg
    13981 gtagtgccgg ctggaccgga taacccaatg ggccatcatg cgattcgtct ggcggcctat
    14041 ggcggcgttt atttgcttca tggtacgaac gccgatttcg gcattggcat gcgggtaagt
    14101 tctggctgta ttcgtctgcg ggatgacgat atcaaaacac tctttagcca ggtcacccca
    14161 ggcaccaaag tgaatatcat caacactccg ataaaagtct ctgccgaacc aaacggtgcg
    14221 cgtctggttg aagtacatca gccgctgtca gagaagattg atgacgatcc gcagctgctg
    14281 ccaattacgc tgaatagcgc aatgcaatca tttaaagatg cagcacaaac tgacgctgaa
    14341 gtgatgcaac atgtgatgga tgtccgttcc gggatgccgg tggatgtccg ccgtcatcaa
    14401 gtgagcccac aaactctgta aatcctggat aaaaaaaatc cccgcgacac ggcatgtcgc
    14461 ggggaaaaaa tcagcagtag caggcattaa tgagggttaa tgcttattta taaattactg
    14521 ctgttccatg gagggtattc ggaccggtta cagaagtaat acggaaagat tttgcaccca
    14581 tctcatccgc tttttgcgcc agctgctctt ccagcgatcc cagatttgtc cccgctttag
    14641 cactgattgt accgactttt tgttggcctt ctggcgttga ctgaacttcg acagccgcaa
    14701 agctggcaaa tgacatggag cttaaaatcg ccgcagcgat gagggttttt acgtttttca
    14761 taatagtggc cttatgcaga tgaatgacgt cgcaagcaat tacttaacga tcgataacta
    14821 aatgacagat gtgatctgga tcacatacaa gatatttttt ataacaatca ttaattaatt
    14881 taaaaatctt taaatttcag ttaaatagaa agcaattatt tttatgggat ctggactggt
    14941 gaacggaggt gattattttt ataataatct ttcattcaca gtcaccaggt acaacggcat
    15001 catggcaact gactcaacac aatgtgtaaa aaaaagccgt ggccgcccaa aagtgttcga
    15061 cagggatgcc gcgcttgata aggccatgaa attgttctgg caacacggtt atgaagcgac
    15121 ttctcttgcg gacctcgtcg aagcgaccgg agccaaagcg cccacgctat acgcggaatt
    15181 taccaacaaa gaggggttat ttcgtgccgt tctcgaccgc tatatcgatc gttttgccgc
    15241 taagcatgaa gcacagctgt tttgtgaaga gaaaagcgtg gagtctgcgc tggctgacta
    15301 ttttgctgcc atcgccaact gctttaccag caaagacacc ccggcaggct gcttcatgat
    15361 caacaactgc accaccctct ccccagattc aggagatatc gccaatacgt tgaaatcacg
    15421 ccatgcgatg caagagcgca ctttgcagca gtttttatgt caacgacaag cgcgcgggga
    15481 aatcccgacc cactgtgacg tgacacatct ggcagaattc cttaattgta ttattcaggg
    15541 gatgtcgatc agcgcacgcg aaggtgcatc gctggaaaaa ctaatgcaga ttgccggaac
    15601 gactttgcgt ttatggcccg aactggtgaa ataagtcgca aaaaaagccc ctcagcctga
    15661 gcgaatgagg ggccaaattg cagagtacag ccttgttata ctttgttatt caaaatcagt
    15721 tgcccattac tatctagcgg gatctgcgta cccggatcgc ggtccatgcg gattttgccc
    15781 tgctgatcgc caatcttata ggtcacatca taaccgagca ttttttctga cttgtcatac
    15841 accgttttac aacgctgttg cgtagtcgtg taagtatcgc tttcctggag agagccctgg
    15901 atctggttac cggcatatcc accacccagc gcccccacaa cagtggcgac atctttaccg
    15961 cgaccaccgc caaactgatg ccctatcacg ccgccagcaa cagcgccgag caccgacccg
    16021 gtaatgcgat tttcatcctg caccggtcga cgatgggtca ctgtgacgtt gcgacactcc
    16081 tgacgcggtg ttttaaccgt ttccttgatt ggggttgcag aaacaacctg agcgtattgc
    16141 gggccacgtt caaacacgtt cagactggcc actgccgcta cgcccagcgc agctgcgaca
    16201 ccaatcccga tacccgccaa cattgattta ttcacgggaa cacctccttc tttgcagtta
    16261 tgccaatcat gcaagcgaag gagaaaagca gctatcagac agaagatgaa aagcgcggga
    16321 atggctggaa atacttaatg attcggagga gtctgaagga atgcctgatg cgacgcttaa
    16381 cgcgtcttat caggcctacc gctcgtacca tttgtccagg gcggatgagg cgtttatgcc
    16441 acatccgcca gtgtacgtcg attaatgcaa cttcaaacgc ggacggataa cgcggttaat
    16501 actccccacc agcatcatta atccggtttt aaagtaacca tgcagcgcaa tctgatgcat
    16561 tcggtatagc gagatatata caaagcgcgc aattcgtcct tcaatcatca ttgagccgcg
    16621 cgtcaagtta cccatcaggc taccaacggt ggagaagttc gacagcgata ccagtgaacc
    16681 atgatcttta tactgataat ttttcagcgg cttaccgttt atctgcgcca gaatattgtt
    16741 cattgcgcaa gtcgccatct ggtgtgcagc ctgagcacgc ggcggaacaa agcccccttc
    16801 cggacgcgtg catgacgcgc agtcgccaat agcgtaaatg tctggatcgt gggtggtttg
    16861 cagcgtcggt tccaccacca gctggttgat acggttagtt tcaagaccac cgatatcttt
    16921 caggaagtct ggcgctttga tcccggctgc ccacaccatc agatcagcct caatatattc
    16981 accatcttta gtgtgcaggc cgccttcatc agcactggtg accatggttt gcgtcagcac
    17041 gcgaacgcca agtttcgtta actcactatg ggccgcagca gagatgcgtg gcggtaatgc
    17101 aggcaaaata cgttctcccg cttctactag cgttacgttc agggcttcgt tggtcagacc
    17161 tttataaccg tagctgtgca gttgcttgac cgcgttatgc aactcagcgg agagttctac
    17221 acccgtcgcg ccgccaccga caatcgcaat gttcactttg ccattcgcgc ccaggttggc
    17281 ggagtatttc aggaacagat tcagcatctc ctggtggaag cgacgcgcct ggtgcgggtt
    17341 atcgaggaaa atgcagttct ctttgacgcc tggcgtattg aaatcgttag aggtgctacc
    17401 cagcgccatg accagggtat cataggcgat tttacgttcc ggaaccagca gttcaccttt
    17461 ctcgtcgcgt agttctgcaa tagtgattgt tttcgcttca cgatcaatat caatgacgga
    17521 acccaactgg aactggaaac catgattgcg cgcatgggcc agatagctca acgcatcgac
    17581 gccttcatca agcgagccag tcgccacttc gtgcagcagc ggtttccaca ggtggctgtg
    17641 gttacgatcg accagcgtaa ttttggcttt tttcttacgt cccagcttat gccccagctg
    17701 tgttgccatt tccagcccac cagcaccgcc gccgacaatc acaatctttt tcaatggcgt
    17761 agtcaacgtg acccccttaa atttattaac caattgttaa ttaatggtta ttaacatagc
    17821 tcttaattaa caacaggtta cagcaatgaa aatgttcttc gctattgaga ataacatgaa
    17881 tggtgcattg gtcataccaa aattgatgtt aatcaagttt tgttgctgaa aagataggcg
    17941 actttaccgg gtgagatcaa aaaatagagt ttattgttta ttatttgagc gaatttgtga
    18001 gagtgatata gagtgagggg tgtatgcagg gcgttcggta ggcctgataa gaggcgcatc
    18061 aggcattgat gctcgactgt cggatgcggc gtaaacgcct tatccgactt acagaattcg
    18121 gagcgcatca ggtaccggca aggttacctg atgcgacgag ggcatttacc cgagggtttt
    18181 gaacgcttta atgcgctgca aatgcgggga gatattcttg aatttgtgcg tctgctcttc
    18241 gtcccagaca atctcgtaat aatgatgcaa ctcttcagat gtccgctggc tgttaagcgc
    18301 ttcatcatta cgcgacaaaa tcaccaggca acgatcgcga ttcttctcgc ggaagttggt
    18361 cacacactta gtggcaatat cggcatactc ttccgggcga tcaatcttgc cttccatgtt
    18421 ctcataaggg aacaaattag ggttgaagat cacctggcgg atatcgcaaa gaaaaccaat
    18481 ccgttccgcc cagtatccgc ccagaccaac gccgcaaatc agcggacgct cgtcgacgtt
    18541 cagttgcaac attttgtcca cttctttaag cagatgctgc atatcatgtt tcggatgccg
    18601 cgtactgtag cttatcaagc gtacatccgg gtcaataaac tgcaattgta agactttctc
    18661 gtggttaccc ggactgttag agtcaaaacc gtgtaaatag ataatcatcg cttcctcaca
    18721 taagccaggg ttagtgacct gctttctctt cctgccagcg ttcatgtaac tgattcagac
    18781 gggtgctgct cgccttccag cgagccgagt ccatcagttc ctgtcgcgaa aatgaacctt
    18841 tatgatacaa acgtgtaaca cgttctgcct tgatcggtga cagattatct aacacgctga
    18901 cggccccttt acgattattg cagaccagga tcatatcgca acctgcgtcc agtgatgcct
    18961 gcccgcgttc ggcataactg cccataatcg cggcaccttc catcgataaa tcgtcagaga
    19021 aaattacacc gtcaaaacac agttcctgac gcaaaacggt tttcagccag taagaagaac
    19081 cgctcgccgg acgcggatca acatcactgt agatcacatg cgcaggcata atggcgtcga
    19141 gtttattttc gcggattaac gtgctgaaaa ccgacatatc tttggcacga atttccgctt
    19201 gcgggcgtgg gtcgcacggc gtctctttgt gtgaatctgc agttactgca ccgtgtcctg
    19261 ggaagtgttt cccggtcgtt ttcattccgg cttcatgcat cccatcaata aaccgactag
    19321 cgattgccag ggctttttct gggtcggcat gataagaacg ctcgccaatc gccgcgctga
    19381 tatgtcctac atccagcact ggcgcaaagc tgatatcaat atccatagcg atcatttcgc
    19441 tggccatcag ccaacccgcc tcttgcgcca gtttgccgcc ctcttccatt cccaacagcg
    19501 cagcaaagga ttgtgctgcc ggtaagcggg taaaaccttc gcgaaaacgc tgcacgcgtc
    19561 caccttcctg atctaccgcc accaccagat gattgcgcga tgctgcgcgg atctggcgca
    19621 ccagttcacg taactgggca ggatcatgat agttacgcgt aaagagaatc agccctccca
    19681 ccagcggatg cgccagtatt tcacgctctt ccgcgtccag ttcataacct tcgacatcca
    19741 acattactgg acccacactg ctctccttat tgttttatta atagctgccg ccaggtgtca
    19801 tcggccagcc tgataaattg ttgatcgccg gtttgtcgcc agcggtactc aaaccaccct
    19861 gctttgagca tcagcagcca gggaaaccat cgcctgacct gacgccataa ttgcgccgga
    19921 taaatcttcg cgcgagtggc atagtcattg accaattgcc ggtgctgttc agtattttcc
    19981 acccacaccg ccgccagttc cagcgcggta tcaccatctc cggcatactc ccagtcgatg
    20041 agttttaacc ctgatgcgct atgcactaaa tttccggcgt ggacatccat atgcaatgga
    20101 cttaagcgta aaggtcgtgg ttcccgcgct ttgcgcagac gttttaacat tcgcagccaa
    20161 cccacagtcc gccgcgccgg atcgctttgc tgccagtaca gttccagtaa cggcaacagc
    20221 gttattcgcc agccaaaacg tggttgttga tgtagataat acagcaagcc tgccagttcg
    20281 ttggtatccg gcaaatacgt ttttaccgcg ccgggcagat agtcgactac catccagtca
    20341 cggagatata aatgcggctt cggtgcaatg cttgcgggta gttgtgataa agcccgatac
    20401 tggcgcaaga acgcggactg cggcgcatca ggatcgtgcg gctgacgcac aacaaaacgc
    20461 tggccctgat gttcaatgag aaaactaccg ccactaagcc cactattaaa cgtcgtgacg
    20521 ggatgaaact gcgggaaaaa gcgcgacagc aattcgtcgc gcgtgatggg attattactg
    20581 cgaaacggca cctttacctg accagataat ttcgcccgtc tgcaccagca tcagctgcat
    20641 ttgtagggtc ggagcgttaa cgttgccaga ggcgctggag tacagcacgt aatgagcgcc
    20701 gacattgcgg gcaatgccta tggctttact acgggtgcct aaactgtcct gcggcgacaa
    20761 acctaactgt tgcttagcca tcgacagttg ctgggcggaa accagggtaa atttcccgtt
    20821 attagccagc gcatttcgca gcgtttcggt cgcttctgcg gcattcagcg aaccgttagt
    20881 acggttgtta acgctatcaa ccagcaggac gctacccgca gtcaccccgt cagccccaag
    20941 catcttactg actatcggct gcattgcgcc attccagtca taatggcgaa tatgcggcgc
    21001 aggcggtgcc gttcgatctt cgtgctcaat tgggcctggc tgctgcggga tcgtcggcac
    21061 cgagggcact gtggggacag gctgttgtgg ctcggctggt tgttccggcg ctggtttcac
    21121 ttcttctacc ggtgcaggtt cacgttgtcc cacacacccg gcgagaaaca tcgccagcgc
    21181 ggtaatcaag gcgtagcgac tcatttttgt catcaagatt caccccttac aaatatagat
    21241 aaagtctgac tttgtgcgcc cccagaaaat tggcgctgcc gtacagcgtt accgccgaat
    21301 gtgcgggaat ggtaacgctg cgtggccttt ccagaggatg catctccagc cctctggcgt
    21361 cataccagta aaaacgataa tgaacggtaa cgggtttttg cctttcgtta taaagcgttg
    21421 aggatgctga aggttgaata tcagacgtcg aaaggacggg cttttctgca ctgatgcccg
    21481 cagccaataa agatgactcc atcaccagcg attgctcatc attcaccgga atttccggat
    21541 gtgaacgaca gcccaccagc agtaacaaca ccagagacac cagcccaaag catccttttc
    21601 tcatcgttac agacctttat gcgccagcat tggtcccagc ggacggccac ccaacaagtg
    21661 catatggatg tggtaaacct cttgtccgcc atggcggttg gtattcatga tcagacgata
    21721 gccatcttcg gcaatacctt cttgctcagc aatttttgcc actacggtga tcatgcgtcc
    21781 cagcgcctgc tcatgctcag ctgagacgtc gttcacagtc ggaatgagga tattcggaat
    21841 gatcagaata tgcgttggcg cttgcggcga aatatcgcga aacgccgtta ccagatcatc
    21901 ctggtagacg atatcggagg ggatctcacg acgaataatt ttgctgaata tagtttcttc
    21961 tgccacgaca ttttcctttt tcaaatagcc atgcgttgcg ccatgctacg ccgcgccaca
    22021 ctgcgagtat agagtatggt cgagttaaac ctgctctttc aaccttaact cacgatttct
    22081 taagcaaaaa atcgttttgc tgccgtatat atcgccatta ttcccatttc tgcctgcgaa
    22141 tgcgctgaaa agacattctc tgtttggttt acacgacaaa tatgaatgcg tatatttctc
    22201 atttgcattt acaaacaaaa ttattcgcac actaaatata atcgctcatc accctcctcc
    22261 ggcatgagcc tgacgacaac ataaaccatg agatttcaaa tgctttcaac acaatttaac
    22321 agggataatc aatatcaagc catcaccaaa ccgtcactac ttgccggttg catagcactg
    22381 gcactattac cttctgccgc ttttgctgca ccagccactg aagaaacggt gattgttgag
    22441 ggttcagcca cagctccaga tgatgg
//
LOCUS       DADMJB010000057        20980 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.057, whole genome shotgun sequence.
ACCESSION   DADMJB010000057 DADMJB010000000
VERSION     DADMJB010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20980)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20980)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20980
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.057"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(230..775)
                     /gene="hemG"
                     /locus_tag="JN078_001933"
     CDS             complement(230..775)
                     /gene="hemG"
                     /locus_tag="JN078_001933"
                     /EC_number="1.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone-dependent protoporphyrinogen IX
                     dehydrogenase"
                     /protein_id="HAY9041155.1"
                     /translation="MKTLILFSTRDGQTREIASYLASELKELGIQTDVANVHRIEEPQ
                     WENYDRVVIGASIRYGHYHSAFQEFVKKHATRLNSMPSAFYSVNLVARKPEKRTPQTN
                     SYARKFLMSSQWRPDRCAVIAGALRYPRYRWYDRFMIKLIMKMSGGETDTRKEVVYTD
                     WEQVANFAREIAQLTNKPTLK"
     gene            complement(787..2238)
                     /gene="trkH"
                     /locus_tag="JN078_001934"
     CDS             complement(787..2238)
                     /gene="trkH"
                     /locus_tag="JN078_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkH"
                     /protein_id="HAY9041156.1"
                     /translation="MHFRAITRIVGLLVILFSGTMIIPGLVALIYRDGAGRAFTQTFF
                     VALAIGSMLWWPNRKEKGELKSREGFLIVVLFWTVLGSVGALPFIFSESPNLTITDAF
                     FESFSGLTTTGATTLVGLDSLPHAILFYRQMLQWFGGMGIIVLAVAILPILGVGGMQL
                     YRAEMPGPLKDNKMRPRIAETAKTLWLIYVLLTVACALALWFAGMDAFDAIGHSFATI
                     AIGGFSTHDASIGYFDSPTINTIIAIFLLISGCNYGLHFSLLSGRSLKVYWRDPEFRM
                     FIGVQFTLVVICTLVLWFHNVYSSALMTINQAFFQVVSMATTAGFTTDSIARWPLFLP
                     VLLLCSAFIGGCAGSTGGGLKVIRILLLFKQGNRELKRLVHPNAVYSIKLGNRALPER
                     ILEAVWGFFSAYALVFIVSMLAIIATGVDDFSAFASVVATLNNLGPGLGVVADNFTSM
                     NPVAKWILIANMLFGRLEVFTLLVLFTPTFWRE"
     gene            complement(2277..2891)
                     /locus_tag="JN078_001935"
     CDS             complement(2277..2891)
                     /locus_tag="JN078_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709652.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMPACT family protein"
                     /protein_id="HAY9041157.1"
                     /translation="MESWLIPAAPVTVVEEIKKSRFITMLAHTDGVEAAKAFVESVRA
                     EHPDARHHCVAWVAGAPDDSQQLGFSDDGEPAGTAGKPMLAQLMGSGIGEITAVVVRY
                     YGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYSQLTGIEALLGQCDG
                     KIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQLLAIEE"
     gene            complement(2891..4222)
                     /gene="pepQ"
                     /locus_tag="JN078_001936"
     CDS             complement(2891..4222)
                     /gene="pepQ"
                     /locus_tag="JN078_001936"
                     /EC_number="3.4.13.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020801804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidase"
                     /protein_id="HAY9041158.1"
                     /translation="MESLASLYKNHIATLQERTRDALARFKLDALLIHSGELFNVFLD
                     DHPYPFKVNPQFKAWVPVTQVPNCWLLVDGVNKPKLWFYLPVDYWHNVEPLPTSFWTE
                     DVEVIALPKADGIGSLLPAARGNIGYIGPVPERALQLGIEASNINPKGVIDYLHYYRS
                     FKTEYELACMREAQKMAVNGHRAAEEAFRSGMSEFDINIAYLTATGHRDTDVPYSNIV
                     ALNEHASVLHYTKLDHQAPEEMRSFLLDAGAEYNGYAADLTRTWSAKSDNDYAQLVKD
                     VNDEQLALIATMKAGVSYVDYHLQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMP
                     HGIGHPLGLQVHDVAGFMQDDSGTHLAAPAKYPYLRCTRILQPGMVLTIEPGIYFIES
                     LLAPWREGQFSKHFNWQKIEALKPFSGIRIEDNVVIHENNVENMTRDLKLA"
     gene            4412..6608
                     /gene="fadB"
                     /locus_tag="JN078_001937"
                     /pseudo
     CDS             4412..6608
                     /gene="fadB"
                     /locus_tag="JN078_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001490315.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid oxidation complex subunit alpha FadB"
     gene            6618..7781
                     /gene="fadA"
                     /locus_tag="JN078_001938"
     CDS             6618..7781
                     /gene="fadA"
                     /locus_tag="JN078_001938"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase FadA"
                     /protein_id="HAY9041159.1"
                     /translation="MEQVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPA
                     LEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAA
                     RMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLARMHGI
                     SREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEA
                     LATLRPAFDPVNGTVTAGTSSALSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCN
                     PSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINL
                     NGGAIALGHPLGCSGARISTTLLNLMERKDVQFGLATMCIGLGQGIATVFERV"
     gene            complement(7973..8674)
                     /gene="fre"
                     /locus_tag="JN078_001939"
     CDS             complement(7973..8674)
                     /gene="fre"
                     /locus_tag="JN078_001939"
                     /EC_number="1.5.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-flavin reductase"
                     /protein_id="HAY9041160.1"
                     /translation="MTTLSCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDER
                     DKRPFSMASTPDEKGFIELHIGASEINLYAKAVMDRILKDYQIVVDIPYGEAWLRDDE
                     ERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLSELEALSLKHP
                     GLRVVPVVEQPEAGWRGRTGTVLTAVLQDHGTLAEHDIYIAGRFEMAKIARDLFCSER
                     NAREDRLFGDAFAFI"
     gene            complement(8720..10213)
                     /gene="ubiD"
                     /locus_tag="JN078_001940"
     CDS             complement(8720..10213)
                     /gene="ubiD"
                     /locus_tag="JN078_001940"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HAY9041161.1"
                     /translation="MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLR
                     AGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPK
                     GFRDLFDKLPQFKQVLNMPTKRLRGVPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLIT
                     WGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVS
                     VALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGY
                     IEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGV
                     ALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQF
                     MYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSK
                     MGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA"
     gene            10380..10868
                     /gene="rfaH"
                     /locus_tag="JN078_001941"
     CDS             10380..10868
                     /gene="rfaH"
                     /locus_tag="JN078_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription/translation regulatory transformer
                     protein RfaH"
                     /protein_id="HAY9041162.1"
                     /translation="MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMIPLEKIVRGKRT
                     AVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK
                     DIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR
                     KL"
     gene            complement(10865..11647)
                     /gene="tatD"
                     /locus_tag="JN078_001942"
     CDS             complement(10865..11647)
                     /gene="tatD"
                     /locus_tag="JN078_001942"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' ssDNA/RNA exonuclease TatD"
                     /protein_id="HAY9041163.1"
                     /translation="MFDIGVNLTSSQFAKDRDDVVARAFDAGVNGLLITGTNLRESQQ
                     AQKLARQYSSCWSTAGVHPHDSSQWQAATEEAIIELAVQPEVVAIGECGLDFNRNFST
                     PEEQERAFVAQLRIAAELNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREE
                     MQACVARGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDFTPKPSS
                     RRNEPAHLHHILQRIAHWRGEDAAWLAATTDANVKTLFGIAF"
     gene            complement(11689..12465)
                     /gene="tatC"
                     /locus_tag="JN078_001943"
     CDS             complement(11689..12465)
                     /gene="tatC"
                     /locus_tag="JN078_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatC"
                     /protein_id="HAY9041164.1"
                     /translation="MSVEDTQPLITHLIELRKRLLNCIIAVIVIFLCLVYFANDIYHL
                     VSAPLIKQLPQGSTMIATDVASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKH
                     ERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMA
                     LFMAFGVSFEVPVAIVLLCWMGITSPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLL
                     AIPMYCLFEIGVFFSRFYVGKGRNREEENDAEAESEKTEE"
     gene            complement(12468..12983)
                     /gene="tatB"
                     /locus_tag="JN078_001944"
     CDS             complement(12468..12983)
                     /gene="tatB"
                     /locus_tag="JN078_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HAY9041165.1"
                     /translation="MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLAT
                     TVQNELIQELKLQEFQDSLKKVEKASLTNLTPELKASMDELRQAAESMKRSYVANDPE
                     KASDEAHTIHNPVVKDNEAAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKT
                     AAPSPSSSDKP"
     gene            complement(12987..13256)
                     /gene="tatA"
                     /locus_tag="JN078_001945"
     CDS             complement(12987..13256)
                     /gene="tatA"
                     /locus_tag="JN078_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HAY9041166.1"
                     /translation="MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMS
                     DDEPKQDKTSQDADFTAKTIADKQADTNQEQAKTEDAKRHDKEQV"
     gene            complement(13335..14975)
                     /gene="ubiB"
                     /locus_tag="JN078_001946"
     CDS             complement(13335..14975)
                     /gene="ubiB"
                     /locus_tag="JN078_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HAY9041167.1"
                     /translation="MTPGEVRRLYFIIRTFLSYGLDELIPKMRITLPLRLWRYSLFWM
                     PNRHKDKLLGERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDG
                     KLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDIL
                     PVIKADLKLIYRLARWVPRLLPDGRRLRPTEVVREYEKTLIDELNLLRESANAIQLRR
                     NFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFF
                     TQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFN
                     RDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTAR
                     RFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLESWIKDQVGIPALVRAF
                     KEKAPFWVEKMPELPELVYDSLRQGKYLQHSVDKIARELQSNHVRQGQSRYFLGIGAT
                     LVLSGTFLLVSRPEWGLMPGWLMAGGLIAWFVGWRKTR"
     gene            complement(14972..15577)
                     /gene="ubiJ"
                     /locus_tag="JN078_001947"
     CDS             complement(14972..15577)
                     /gene="ubiJ"
                     /locus_tag="JN078_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis protein UbiJ"
                     /protein_id="HAY9041168.1"
                     /translation="MPFKPLVTAGIESLLNTFLYRSPALKTARSRLLGKVLRVEVKGF
                     STSLILVFSERQVDVLGEWAGDADCTVIAYASVLPKLRDRQQLTALIRSGELEVQGDI
                     QVVQNFVALADLAEFDPAELLAPYTGDIAAEGISKAMRGGAKFLHHGIKRQQRYVAEA
                     ITEEWRMAPGPLEVAWFAEETAAVERAVDALTKRLEKLEAK"
     gene            complement(15591..16346)
                     /gene="ubiE"
                     /locus_tag="JN078_001948"
     CDS             complement(15591..16346)
                     /gene="ubiE"
                     /locus_tag="JN078_001948"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HAY9041169.1"
                     /translation="MVDKSQETTHFGFQTVAKEQKADMVAHVFHSVASKYDVMNDLMS
                     FGIHRLWKRFTIDCSGVRRGQTVLDLAGGTGDLTAKFSRLVGETGKVVLADINESMLK
                     MGREKLRNIGVIGNVEYVQANAEALPFPDNTFDCITISFGLRNVTDKDKALRSMYRVL
                     KPGGRLLVLEFSKPIIEPLSKAYDAYSFHVLPRIGSLVANDADSYRYLAESIRMHPDQ
                     DTLKAMMQDAGFESVDYYNLTAGVVALHRGYKF"
     gene            complement(16441..17868)
                     /gene="rmuC"
                     /locus_tag="JN078_001949"
     CDS             complement(16441..17868)
                     /gene="rmuC"
                     /locus_tag="JN078_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HAY9041170.1"
                     /translation="MDFSIMVYAVIALVGVAIGWLFASYQHAQQKAEQLAEREEMVAE
                     LSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIR
                     QMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSF
                     GKEAQERHTLTHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASG
                     LREGYEYETQVSIENDARSRMQPDVIVRLPQGKDVVIDAKMTLVAYERYFNAEDDYTR
                     ESALQEHIASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELITE
                     ALKNNIMLVSPTTLLVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFIDDMSAI
                     GQSLDKAQDNYRQAMKKLSSGRGNVLAQAEAFRGLGVEIKREINPDLAEQAVSQDEEY
                     RLRSVPEQPNDEAYQRDDEYNQQSR"
     gene            complement(18009..18770)
                     /gene="udp"
                     /locus_tag="JN078_001950"
     CDS             complement(18009..18770)
                     /gene="udp"
                     /locus_tag="JN078_001950"
                     /EC_number="2.4.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine phosphorylase"
                     /protein_id="HAY9041171.1"
                     /translation="MSKSDVFHLGLTKNDLQGATLAIVPGDPDRVEKIAALMDKPVKL
                     ASHREFTTWRAELDGKPVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHI
                     NVGDVLVTTASVRLDGASLHFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTASSD
                     TFYPGQERYDTYSGRVVRHFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAG
                     VIVNRTQQEIPNAETMKQTESQAVKIVVEAARRLL"
     gene            19032..19844
                     /locus_tag="JN078_001951"
     CDS             19032..19844
                     /locus_tag="JN078_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HAY9041172.1"
                     /translation="MATTQQSGFAPAASPLASTIVQTPDDAIVAGFTSIPSQGDNMPA
                     YHARPKQSDGPLPVVIVVQEIFGMHEHIRDICRRLALEGYLAIAPELYFREGDPNDFA
                     DIPTLLSGLVAKVPDSQVLADLDHVASWASRNGGDVHRLMITGFCWGGRITWLYAAHN
                     PQLKAAVAWYGKLTGDKSLNSPKQPVDIATDLNAPVLGLYGGQDNSIPQESVETMRQA
                     LRAANAKAEIIVYPDAGHAFNADYRPSYHAESAKDGWQRMLEWFKQYGGKRS"
     gene            20238..20506
                     /gene="hcp"
                     /locus_tag="JN078_001952"
                     /pseudo
     CDS             20238..20506
                     /gene="hcp"
                     /locus_tag="JN078_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001278763.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tube protein Hcp"
     gene            20660..20980
                     /locus_tag="JN078_001953"
                     /pseudo
     CDS             20660..20980
                     /locus_tag="JN078_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001356833.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tube protein Hcp"
BASE COUNT         5120 a         5659 c         5266 g         4935 t
ORIGIN      
        1 ccgcttcgct ttttctcagc ggcgcggggt gtgcataata cgctttcccg ctacagagtc
       61 aagcattttt ttgcttttct ctgttgagat tctcaggaga accccgctga cccggcggcg
      121 tgtttgccgt tgttccgtgt cagtggtggc gcattatagg gagttattcc ggcctgacaa
      181 gaggaaattt aaaataattt tctgaccgcg cactttttat tctttatgct tatttcagcg
      241 tcggtttgtt ggttaactgg gcgatttctc gggcgaaatt cgccacctgc tcccaatcgg
      301 tatagacaac ttctttgcgc gtatccgttt caccgcctga catcttcata atcagcttaa
      361 tcataaaacg gtcgtaccag cgataacgtg ggtaacgcag cgccccggca atgaccgcgc
      421 agcgatcggg acgccattgt gaactcatca gaaacttgcg cgcgtagctg ttggtctgtg
      481 gagtacgctt ctccggtttg cgcgccacca ggtttacgga ataaaaggcg ctcggcatcg
      541 aattcagtcg cgtcgcatgt tttttgacaa attcctggaa cgcagagtgg tagtgaccat
      601 agcgaataga agcaccaatg accacacggt catagttttc ccattgtggt tcttcaatgc
      661 ggtgcacatt ggcgacatcc gtctggatcc ccagttcttt cagttccgaa gccaggtagg
      721 aggcaatctc gcgcgtttgt ccgtcccttg ttgagaaaag aattaatgtt ttcacgtatt
      781 actccatcat tcacgccaga aagtcggggt aaagagcacc agcaatgtaa agacctcgag
      841 acgaccaaac agcatgttgg caatcaggat ccatttagcc accgggttca tactggtaaa
      901 gttatcagca accacgccaa gccctggccc caggttattc aatgtcgcaa caactgaggc
      961 aaaggcagaa aaatcatcca cgcccgtggc gataatcgcc agcatactga caataaacac
     1021 caatgcatag gcggagaaaa atccccaaac ggcttcgagg atacgttccg gcagtgcgcg
     1081 attccccagc ttaatgctat agacggcgtt cggatgcacc agtcgtttca gctcacggtt
     1141 cccctgctta aacagcagca ggatgcggat cactttcagg ccaccgcccg ttgacccggc
     1201 gcaaccgccg ataaaagctg aacataaaag cagtaccggc aaaaagagcg gccagcgggc
     1261 aatgctgtca gtcgtaaacc cggcggttgt cgccatcgat accacctgga aaaacgcctg
     1321 gttaattgtc atcagcgccg aactgtagac attatgaaac cacagtacga gtgtacaaat
     1381 aaccaccagc gtaaactgta cgccgataaa catgcgaaat tccggatcgc gccaataaac
     1441 cttcagacta cgcccactta acagtgaaaa gtgcagaccg tagttacaac cggagatcag
     1501 caggaagata gcaatgatag tgttaatagt cggactgtcg aaataaccga tactggcatc
     1561 atgtgtcgag aagccgccaa tagcgatagt cgcaaagcta tggccgatgg catcaaaggc
     1621 atccattccg gcaaaccaca acgccagcgc acaggcgacg gtcagcaaga cataaatcaa
     1681 ccacagggtt ttcgccgttt ccgcaattcg cgggcgcatt ttgttatctt tcagcgggcc
     1741 gggcatttct gcgcgataga gctgcatccc acccacgccg aggataggca gtatcgcaac
     1801 cgctaacacg atgatcccca tcccgccaaa ccattgcagc atctggcgat aaaagaggat
     1861 ggcatgaggg agcgaatcca gccccaccag cgtagtggcc ccggtggtgg tcaggccaga
     1921 gaaagattca aaaaacgcat cggtaatcgt gaggttcggg ctttccgaga agataaaagg
     1981 gagcgcaccg acactaccca gcacggtcca aaacagcacc actatcagaa acccctcacg
     2041 ggatttcagt tcgcccttct ctttgcggtt cggccaccac agcatagagc caatggcgag
     2101 ggcgacaaaa aaggtctggg taaaagcgcg gcccgctcca tcccggtaga tgagtgctac
     2161 cagcccaggg ataatcatgg tccctgaaaa taagatgacc agtagtccaa cgattcgggt
     2221 aatggcgcga aaatgcatct ctgccgcttc cttagttctg caaaatgaag tggggattat
     2281 tcttcaatcg ctaacaattg caatgaacca cggctaaaat ccgccagctt tgcggaaaat
     2341 tcagccactt tcgccgccgg aagcgccacc cgcagcagaa cgaatgcctg ataatcactg
     2401 ttgataattt tgccgtcaca ctgccccagc aacgcttcaa tgccggttaa ctgactatat
     2461 tcacattgca aagtatattc ggttaatggc gtcttgcgtt gggtcgttag ctggcgcagc
     2521 gcctgattca cgccgccgcc atacgctttc actaacccac cggtgccaag caatatgccg
     2581 ccgtagtagc gcactaccac agcggtaatt tccccgatgc cgctgcccat tagctgggcg
     2641 agcatcggtt tacctgccgt tcccgccggc tccccgtcgt cagagaaacc cagctgttga
     2701 gaatcatccg gcgcacccgc cacccacgcc acgcaatggt ggcgggcatc ggggtgttct
     2761 gcccgcaccg attcaacaaa cgctttcgcc gcctcaacgc catcggtatg cgccaacatc
     2821 gttatgaagc ggctcttttt gatctcttca acgaccgtga ccggtgccgc aggaattaac
     2881 cagctttcca tcacgccagt ttcagatccc gggtcatgtt ttccacgtta ttttcgtgga
     2941 tcaccacgtt gtcttcgata cgaatgccgc tgaacggttt cagtgcttca attttctgcc
     3001 agttgaagtg cttgctgaac tgcccttcac gccacggtgc cagtagcgat tcgatgaagt
     3061 agatacccgg ttcgatggtt aacaccatgc ccggctggag aatacgggtg cagcgcaggt
     3121 acggatattt tgccggtgcc gcgaggtgtg taccgctatc atcctgcata aaaccggcta
     3181 cgtcatgcac ctgcaggccc agcggatggc cgataccgtg cggcataaac ggtccggtga
     3241 gatcgttttc gaccatcgct tcttcactca tatcggtgat gatttgatgt ttacgcagca
     3301 atttggcgat gcgctgatgg aactggaggt ggtaatccac atagctgacg ccagctttca
     3361 tggtagcgat cagcgcaagt tgttcatcat ttacgtcttt caccagctgt gcgtagtcgt
     3421 tgtcgctttt tgccgaccag gtacgagtca gatcagccgc atagccgtta tattcggccc
     3481 cggcatccag caggaagctg cgcatctctt ccggtgcctg atgatccagt ttggtgtaat
     3541 gcagcaccga agcgtgttcg ttaagcgcca caatgttgct gtaaggtacg tcggtatcac
     3601 gatgaccggt cgcggtcaga taggcgatgt tgatatcgaa ctcgctcatg ccagaacgga
     3661 acgcttcttc tgccgcacga tgaccgttga ccgccatttt ctgcgcttca cgcatacagg
     3721 ccagttcgta ctcggttttg aaggagcggt agtaatgcag gtagtcgatc acccctttcg
     3781 ggttgatgtt gctggcctca atacccagtt gcagcgcacg ttccggcacc ggaccgatat
     3841 aaccgatatt gccgcgcgca gcgggcagca ggctaccaat gccatcggct ttcggcagtg
     3901 cgatcacttc cacatcttca gtccagaagg aggtcggcag cggttcgacg ttgtgccagt
     3961 aatcaaccgg cagatagaac cacagtttcg gcttgttcac gccatccacc agcaaccagc
     4021 agtttggcac ctgagttacc ggcacccacg ctttgaattg cgggttcact ttaaacggat
     4081 agggatgatc gtcgagaaaa acgttgaaca gctcgccgga gtgaataagt aatgcatcca
     4141 gcttgaagcg cgccagcgca tcgcgagtcc gttcttgtaa ggtagctata tgatttttat
     4201 agagcgaggc cagtgattcc attttttacc cttctgtttt tttgacctta agtctccgca
     4261 tcttagcaca tcgttcatcc agagcgtgat ttctgccgag cgtgatcaga tcggcatttc
     4321 tttaatcttt tatttacatg tttttaacac aaaatacaca cttcgatgca tctggtacga
     4381 ccagatcacc ttgcggattc aggagactga catgctttac aaaggcgaca ccctgtacct
     4441 tgactggctg gaagatggca ttgccgaact ggtatttgat gccccaggtt cagttaataa
     4501 actcgacact gcgaccgtcg ccagcctcgg cgaggccatc ggcgtgctgg aacagcaatc
     4561 agatctaaaa gggctgctgc tgcgttcgaa caaagcagcc tttatcgtcg gtgctgatat
     4621 caccgaattt ttgtccctgt tcctcgttcc tcgttcctga agaacagtta agtcagtggc
     4681 tgcactttgc caatagcgtg tttaatcgcc tggaagatct gccggtgccg accattgctg
     4741 ccgtcaacgg ctatgcgctg ggtggtggct gcgaatgcgt gctggcgacc gattatcgtc
     4801 tggcgacgcc ggatctgcgc atcggtctgc cggaaaccaa actgggcatc atgccgggct
     4861 ttggcggttc tgtacgtatg ccacgtatgc tgggcgctga cagtgcgctg gaaatcattg
     4921 ccgccggtaa agatgtcggc gcggatcagg cgctgaaaat cggtctggtg gatggcgtag
     4981 tcaaagcaga aaaactggtt gaaggcgcaa aggcggtttt acgccaggcc attaacggcg
     5041 acctcgactg gaaagcaaaa cgtcagccga agctggaacc actaaaactg agcaagattg
     5101 aagccaccat gagcttcact atcgctaaag ggatggtcgc acaaacggcg gggaaacatt
     5161 atccggcgcc catcaccgca gtaaaaacca ttgaagctgc ggcccgtttt ggtcgtgaag
     5221 aagcattaaa tctggaaaac aaaagctttg tcccgctggc gcacaccaac gaagcccgcg
     5281 cactggtcgg cattttcctt aacgatcaat atgtaaaagg caaagcgaag aaactcacca
     5341 aagacgttga aacaccgaaa caggccgctg tactgggcgc aggcatcatg ggtggcggca
     5401 ttgcttacca gtctgcgtgg aaaggcgtac cggttgtcat gaaagatatc aacgacaagt
     5461 cgttaaccct cggcatgacc gaagccgcga aactgctgaa caagcagctt gaacgcggca
     5521 agatcgatgg tctgaaactg gctggcgtga tctccacgat ccacccaacg ctcgactacg
     5581 ccgggtttga ccgcgtggat gttgtggtag aagcggttgt cgaaaacccg aaagtgaaaa
     5641 aagccgtact ggcagaaacc gaacaaaaag tacgcccgga taccgtactg gcgtctaaca
     5701 cttcaaccat tcctatcagc gaactggcca acgcgctgga acgcccggaa aacttctgcg
     5761 gaatgcactt ttttaacccg gtacaccgga tgccgttggt agaaattatt cgcggcgaga
     5821 aaagctccga cgaaaccatc gcgaaagttg tcgcctgggc gagcaagatg ggcaagacgc
     5881 cgattgtggt taacgactgc cccggcttct ttgttaaccg cgtgctgttc ccgtatttcg
     5941 ccggtttcag ccagctgctg cgcgacggcg cggatttccg caagatcgac aaagtgatgg
     6001 aaaaacagtt tggctggcct atgggtccgg catatctgct ggatgtcgtg ggcattgata
     6061 ccgcgcatca cgctcaggct gtcatggcag caggcttccc gcagcggatg cagaaagatt
     6121 accgcgatgc catcgacgcg ctgtttgatg ccaaccgctt tggtcagaag aacggcctcg
     6181 gtttctggcg ttataaagaa gacagcaaag gtaagccgaa gaaagaagaa gacgccgccg
     6241 ttgaagacct gctggcagaa gtgagccagc cgaagcgcga tttcagcgaa gaagagatta
     6301 tcgcccgcat gatgatcccg atggtcaacg aagtggtccg ctgtctggaa gagggcatta
     6361 tcgccactcc ggcggaagcg gatatggcgc tggtctacgg cctgggcttc cctccgttcc
     6421 acggcggcgc gttccgctgg ctgaacaccc tcggtagcgc aaaatacctc gatatggcac
     6481 agcaatatca gcacctcggc ccgctgtatg aagtgccgga aggtctgcgt aataaagcgc
     6541 gtcataacga accgtactat cctccggttg agccagcccg tccggttggc gacctgaaaa
     6601 cggcttaagg agtcacaatg gaacaggttg tcattgtcga tgcaattcgc accccgatgg
     6661 gccgttcgaa gggcggtgct tttcgtaacg tgcgtgcaga agatctctcc gctcatttaa
     6721 tgcgtagcct gctggcgcgt aacccggcgc tggaagcggc ggccctcgac gatatttact
     6781 ggggttgtgt gcagcagacg ctggagcagg gttttaatat cgcccgtaac gcggcgctgc
     6841 tggcagaagt gccgcactct gtcccggcgg ttaccgtcaa tcgcttgtgt ggttcatcca
     6901 tgcaggcact gcatgacgca gcacgaatga tcatgactgg cgatgcgcag gcatgtctgg
     6961 ttggcggcgt ggagcatatg ggccatgtgc caatgagtca cggcgtcgat tttcaccccg
     7021 gcctgagccg caatgtcgcc aaagcggcgg gcatgatggg cttaacggca gaaatgctgg
     7081 cgcgtatgca cggtatcagc cgtgaaatgc aggatgcctt tgccgcgcgg tcacacgccc
     7141 gcgcctgggc cgccacgcag tcgggcgcat ttaaaaatga aatcatcccg accggtggtc
     7201 acgatgccga cggcgtcctg aagcagttta attacgacga ggtgattcga ccggaaacca
     7261 ccgtggaagc cctcgccacg ctgcgtccgg cgtttgatcc agtaaacggt acggtaacgg
     7321 cgggcacatc ttctgcactt tccgatggcg cagctgccat gctggtgatg agtgaaagcc
     7381 gcgcccatga attaggtctt aagccgcgcg ctcgtgtgcg ttcgatggcg gtcgttggtt
     7441 gtaacccatc gattatgggt tacggcccgg ttccggcctc gaagctggcg ctgaaaaaag
     7501 cggggctttc tgccagcgat atcggcgtgt ttgagatgaa cgaagccttt gccgcgcaga
     7561 tcctgccgtg cattaaagat ctcgggctaa tggagcagat tgacgagaag atcaacctca
     7621 atggtggtgc gatcgcgctg ggtcatccgc tgggctgttc cggtgcgcgt atcagcacca
     7681 cgctgctgaa tctgatggaa cgcaaagacg ttcagtttgg tctggcgacg atgtgtatcg
     7741 gtctgggtca gggtattgcg acggtgtttg agcgggttta accacttgcc ggatgcggcg
     7801 tgaacgcctt atccggtcta ccgatcctgc accaatgtag gcctgataag acgcgccagc
     7861 gtcgcatcag gcatcgtgca ccgattgccg gatgcgacat agatctaaat gccactgaat
     7921 aaagttttag ttgccgttct tcccgcctgt caggggcggg tttttttata tctcagataa
     7981 atgcaaacgc atcgccaaac agacgatctt cccgcgcatt acgctcactg caaaacaggt
     8041 cacgagcaat tttcgccatc tcaaaacgtc cggcaatata gatatcatgc tctgccagcg
     8101 taccatgatc ctgcaagacc gccgttaaca cggtgccagt acgcccacgc cagcccgctt
     8161 ccggttgttc aaccaccggc accacacgca ggccaggatg cttcagcgaa agcgcctcaa
     8221 gctcggagag atcataaaga tgttgctcct cacgcccacc ccagtaaatg gtgatatcgc
     8281 gattgggatt acgcgccaac gccgtcaata aaatcgagcg cgcataggag aacccggtgc
     8341 cgcccgcaat caaaatcatc ggacgctctt catcatcgcg cagccacgct tctccgtagg
     8401 gaatatcgac cacgatttga taatctttga ggatgcggtc catgactgct ttcgcgtaaa
     8461 ggttgatttc agaagcgcca atatgcagct ctataaaccc tttttcatcc ggcgtcgaag
     8521 ccattgaaaa cggacgtttg tcgcgctcat ccatcactac catcaaatac tgaccagcac
     8581 gaaaagaaaa ggccgcgtct ggcacgatgc ggacacgata tacggtatcc gtgatagctt
     8641 ctaccgaggt cactttacag cttaaggttg tcatgcgctt tctctgtcgg atcgataaat
     8701 agggcaaaac aaacgcgcat caggcgcttt taccgttgtt aaaaatagcc agttcatccc
     8761 agatggcgtc aatatgcgcg acaacatctg gatctttttt gatgggacgt ccccattcac
     8821 gctgggtttc ccccggccat ttattcgtgg catccagccc catttttgaa cccagcccgg
     8881 agacaggcga ggcaaaatcc agataatcaa taggcgtatt ttctaccaga acagtatccc
     8941 gcgccgggtc catacgggtg gtaatcgccc aaatcacatc gttccagtcg cgtgcgttga
     9001 cgtcatcatc gcaaacgatc acaaatttag tgtacataaa ctggcgtaag aacgaccaga
     9061 cgcccatcat gacgcgcttc gcgtgtccgg cgtactgttt tttgatcgtc actaccgcca
     9121 gacgataaga acagccttcc ggcggcaggt aaaaatcgac aatttccggg aactgttttt
     9181 gcagaatcgg tacaaacact tcgttcaacg ccacgcccag taccgcgggc tcatctggcg
     9241 gacgcccggt ataggtggaa tggtaaatcg catcttcacg ctgggtaata tgcgtcacgg
     9301 taaataccgg gaaactatcg acttcgttat agtaaccggt gtggtcgcca tacggccctt
     9361 ccggcgcagt ttcgccttgt tcgatatacc cttccagcac aatctccgca ctggcgggca
     9421 cttcaaggtc attggagata cacttcacca cttcggtctt ggtaccgcgc agcaatccgg
     9481 caaacgcata ctctgaaagt gtatccggaa cgggggtgac tgcaccgaga atcgtggcgg
     9541 gatcggcacc cagcgccaca gaaaccggga aacgttcgcc cggatgcgcc gcacaccact
     9601 cctgataatc cagcgcgccg ccgcgatgcg acagccagcg cataatcagt ttgtttttac
     9661 caatcagctg ctggcgataa atgcccagat tctgccgctc tttatgcggg ccgcgcgtca
     9721 ctgtcagccc ccaggtaatc agcggtgcgg catcttccgg ccagcaggtc ataatgggaa
     9781 tgcgattgag atcgacgtca tcgccagaga cgattttttg ttggcagggc acaccacgca
     9841 gccgctttgt cggcatgttc aatacttgct taaactgcgg cagtttatca aacaggtcgc
     9901 ggaaaccttt tggcggctcc ggctctttca gaaacgccaa taatttacca acttcacgca
     9961 gcgccgaaac atcttcctgt cccatgccca tcgccacgcg ctttggcgta ccgaacaggt
    10021 tgcacagcac cggcattgag tagcctttag ggttttcgaa caacagcgca ggcccaccgg
    10081 cacgcaaagt gcggtcagca atttcagtga tttccagatg cggatccacc gggagcgtga
    10141 tacgttttag ctcaccctgc tgttcaagca gcgtcaagaa gtcgcgtaaa tcgttatatt
    10201 tcatggcgtc cattgtagcc tcttaatcta cgcccattat acggcgttca tctttgcgat
    10261 gctgtaaatt tgttaaatta gcgtgaactc tgacggtata acgcaaaccg gggaatataa
    10321 ttaacttagc gtaaagcttt tgctatcctt gcgccccgat taaacggata agagtcatta
    10381 tgcaatcctg gtatttactg tactgcaagc gcgggcaact tcaacgtgcc caggaacacc
    10441 tcgaaagaca ggctgtgaat tgcctggcac cgatgatccc cctggaaaaa atcgtgcgtg
    10501 gaaaacgtac tgcagtcagt gagccattgt ttcccaacta cctgtttgtc gaatttgatc
    10561 cagaagtgat tcataccacg actatcaacg cgacccgcgg tgtcagccac ttcgtgcgct
    10621 ttggcgcgtc gccagcgata gtcccatcgg cggtgattca tcagctatcg gtatataaac
    10681 cgaaagacat tgtcgatccg gcaacacctt atccgggtga taaggtgatt attaccgaag
    10741 gcgcgttcga aggctttcag gccattttca ccgaacccga tggtgaggct cgttccatgc
    10801 tattgcttaa tcttattaat aaagagatta agcacagtgt gaagaacacc gagttccgca
    10861 aactctaaaa cgcaatccca aacagtgttt tgacattggc atccgtggtg gcagccagcc
    10921 atgcggcatc ttctccacgc cagtgcgcaa tacgttgcaa aatatggtgc agatgggctg
    10981 gctcgttgcg ccgggatgat ggctttggcg tgaaatcgcg cgggagcaga tacggcgcat
    11041 cagtttcgat cagcaatttc tccgccggaa tcaacggtaa caattcccgc agctccagcc
    11101 cgcgtcgttc atcgcaaacc caaccggtaa tgccgatata aattccacgc gccacgcacg
    11161 cctgcatctc ttcgcgtgtg ccggtaaagc aatgaagaac cgcaccaggc agtttatcca
    11221 gccacggctc cagcaatgtc ataaaccgct cgtgggcatc gcgacagtgc ataaataccg
    11281 gcatgtttaa ttctgcggca atgcgtagct gagcaacaaa agcgcgttcc tgctcttccg
    11341 gcgtcgaaaa gttgcggtta aagtcgagac cacattcacc aatcgccacc acttctggct
    11401 gcacggccag ctcaataatc gcttcttcag tcgcagcttg ccactggctg ctgtcgtgag
    11461 gatgtacgcc cgccgttgac caacaggacg aatactgacg cgccagcttt tgcgcctgct
    11521 ggctttcacg caggttagtg ccggtgatga gtagcccatt aactcccgcg tcaaaagcgc
    11581 gcgctacaac atcatcacgg tctttcgcaa attgcgaact ggtcaaatta acgccgatat
    11641 caaacatcct gtactccata tgacaaccgc cctgacgggc ggttgaattt attcttcagt
    11701 tttttcgctt tctgcttcag cgtcgttttc ctcttcccga tttcgccctt taccaacgta
    11761 aaagcgtgag aagaagacac cgatttcaaa cagacagtac atcgggatcg ccaatagcgt
    11821 ttgcgagaag acatccggcg gcgtcagcaa catcccgaca acgaatgcac caaccagcac
    11881 atacgggcgt tttttgcgta agtcttctgg cgaggtaatc cccatccagc acagcagcac
    11941 aattgccacc ggcacttcaa aggagacacc aaacgccata aacagcgcca taacgaagct
    12001 taaatagctg gcgatgtcgg tggatacctg caccccttcc ggcgcggtat tggcaaggaa
    12061 gccaaatgcc agcggaaaga ccacaaagta ggcgaatgcc atgccgatat aaaacagcag
    12121 agagctggaa accagcagcg gcaccaccag gcgacgttca tgcttataca gcgctggggc
    12181 gataaatgcc cacacctgat agagaatcac cggcgctgac agaatcagcg acaccataaa
    12241 ggtcagcttg atcggcgtaa agaacggcga ggccacgtcg gtggcgatca tcgttgaacc
    12301 ttgcggcaac tgcttgatca atggcgcgga taccaggtga tagatgtcat tggcgaaata
    12361 gaccagacac aggaatatca cgatcaccgc gataatgcag ttcagcagac gcttacgcag
    12421 ctcaattaga tgcgtgataa gcggttgagt atcttctaca gacatgttta cggtttatca
    12481 ctcgacgaag gggaaggtgc agcggttttc ggttcagcgt ccgcagcagg ttttaccacc
    12541 ggctctggcg tggtttctgg cttctgttcc ggcgaactgg cctgcgtttg tgcagcggca
    12601 ggcgttacgc cctcatgcgc agcttcatta tctttcacca ccgggttatg gatggtgtgc
    12661 gcttcatcgc tcgccttttc tggatcgttt gcaacgtagg aacgcttcat cgactccgcg
    12721 gcctggcgta gttcatccat cgacgctttc agttcgggcg tcaggttagt gaggctcgcc
    12781 ttttcaacct ttttcagact gtcctgaaac tcctggagtt ttaactcctg gatcagttcg
    12841 ttctgcaccg ttgtcgccag tgaacgcaac gcgcgaatcc agcccgctac cgtttttacc
    12901 gccacaggca gtcgttgcgg ccccagaacg acgaggccga tgatgaacac caatagcagt
    12961 tcgctaaaac cgatatcaaa cacggattac acctgctctt tatcgtggcg cttcgcgtct
    13021 tctgttttag cctgttcctg attcgtatcc gcctgcttat cggcgatagt tttcgcagta
    13081 aaatcagcat cctgactggt tttatcctgc tttggttcat catcgctcat tgctttttta
    13141 aagcctttga tcgacgcacc aagatcggaa ccgatggagc cgagcttttt ggtgccaaaa
    13201 agcagtacaa cgatgacggc aataatcaat aactgccaaa tactgatacc acccatacat
    13261 gttcctctgt ggtagatgat gattaaacaa agccgcatta tacgttacac ggcccgcctt
    13321 gagcgatgaa aaaatcagcg tgttttgcgc caaccgacaa accaggcgat cagaccacct
    13381 gccattaacc agccgggcat cagcccccac tcaggtcggc tgaccaacaa gaatgtgcca
    13441 cttaatacta acgtagcgcc aattccgaga aaataacgcg attgtccctg acgtacatga
    13501 tttgactgaa gctcgcgggc aatcttatca acactgtgct gtaaatactt gccctggcgc
    13561 aaactgtcgt aaaccaattc aggcagttct ggcatttttt cgacccagaa cggcgctttt
    13621 tctttaaatg ctctcaccag cgcaggaata ccgacctgat ctttaatcca cgactccagg
    13681 aaaggcttcg ctgttttcca taaatcgagc tgcggataaa gctggcgtcc taccccttcg
    13741 acatagagca gggttttctg gagtaacacc agttgcggct gcacttccat attgaagcga
    13801 cgcgccgtat taaacagatt taacagtaca tgtccaaacg aaatttcggc cagcggtttc
    13861 tcaaagatag gttcacagac cgtacgaatg gcaaattcga actcttcaac gttggtatct
    13921 ggtggcaccc agcctgaatc gacgtgtagc tctgccactt tgcgatagtc gcgattaaag
    13981 aaggcgataa agttttctgc cagatagcgt ttatcttctt tgtttagcga gccaacaatc
    14041 ccgcaatcaa tgccgatata tttcgggttt tccgggtgtt catagcttac gaagatgttg
    14101 ccagggtgca tatcggcatg gaaaaagctg tcgcgaaaga cctgagtgaa gaacacctgc
    14161 acgccgcgtt ccgccagcaa tttcatgtta gtgccgtttt tctccagcgc cgcaacatca
    14221 gacaccggaa tgccgtaaat gcgctccatc accatcatcc cttcactaca atagtcaggg
    14281 taaacttccg ggatgtagag catcgggctg tcttcaaaat tgcgccgaag ctgaatggcg
    14341 ttggcagatt cccgcagcaa attcagttca tcaatcaagg tcttttcgta ctcgcgcacc
    14401 acttcggttg ggcgcagacg gcgaccatcc ggcagcaaac gcggcaccca gcgagccaga
    14461 cggtagataa gtttcagatc cgctttaatg accggcaaaa tatccgggcg gatgacttta
    14521 atcaccacct ctttaccatt cgatttcaat cgcgcggtat gaacctgggc gatagaagca
    14581 gaagccagcg gcttgatttc aaaatcgtca aaccacgctt ctaccggcaa gccgcccatt
    14641 gcagcttcaa tctgctgctt cgccagcttg ccatcaaacg gagctacttt gtcctgcaat
    14701 aacgccagct gatcggcaat atgcggtgga aaaagatcgc ggcgggttga taacatttgc
    14761 ccgaacttga tccaaaccgg ccccagttct tgcagggcca gtcgtagtcg ctcacctaaa
    14821 agtttgtctt tatgccgatt tggcatccag aataatgagt atcgccatag ccgtagcggc
    14881 agggtgatac gcattttggg gatcagttca tcaagtccgt agcttaaaaa agtgcgaatg
    14941 atgaaatata ggcgccgtac ttcacctggc gtcatttagc ctccagtttt tccagccgtt
    15001 tggtcagggc atcaacagca cgctcgacgg cagccgtctc ttccgcaaac caggccactt
    15061 caagcggacc gggtgccata cgccactctt cagtaatggc ttccgccaca taacgttgct
    15121 ggcgcttaat gccgtgatgc aggaactttg cgcctccgcg catggctttg ctgattcctt
    15181 cagcggcgat atcaccggta taaggggcca gcagttccgc agggtcgaac tctgccagat
    15241 ctgccagcgc aacgaagttt tgcaccacct gaatatcgcc ctgcacttcc agctcaccac
    15301 tgcgaatcag tgcggtaagc tgctggcgat cgcgaagttt cggcaacaca ctggcgtagg
    15361 cgataacggt gcagtcagca tcgcctgccc attcgcccag tacatcaacc tggcgttcgc
    15421 tgaacaccag aatcaatgac gtcgaaaagc cttttacctc cacgcgcaat actttaccca
    15481 gcagacgcga gcgggctgtt ttcagcgcgg gtgagcgata caggaaggtg ttgagcagac
    15541 tttcaattcc tgccgtcact aaaggtttaa aaggcatttc cggtctcctg tcagaactta
    15601 taaccacgat gcagcgccac aacccctgcc gtcagattgt agtagtcgac actttcgaat
    15661 ccggcatcct gcatcatggc tttcagggta tcctgatcgg gatgcatacg gatggattct
    15721 gccagataac ggtagctgtc ggcgtcgttc gcgaccagtg agccaatacg cggcagcaca
    15781 tggaaggagt atgcatcata ggctttgctc agcggctcga taattggctt cgagaactca
    15841 agcaccagca ggcggccgcc gggtttcagc acgcgataca ttgaacgcag tgctttatct
    15901 ttgtcggtga cgttacgcag accaaacgaa atggtgatgc aatcaaaggt gttatccggg
    15961 aacggcagcg cctcagcgtt cgcctgaaca tactcaacgt tgccaatcac accgatatta
    16021 cgcagcttct cgcgtcccat tttgagcatg gattcattga tatcagcaag gaccactttg
    16081 ccagtttctc cgaccaggcg ggagaatttc gctgtcaggt cgccggtgcc accagccaga
    16141 tccagcacgg tctgcccacg gcgtacgccg ctgcaatcaa tcgtgaatcg cttccacaaa
    16201 cgatgaatac caaatgacat caaatcattc atgacatcgt attttgatgc cacggaatgg
    16261 aaaacgtggg cgaccatatc cgctttttgt tccttcgcga cggtctgaaa accaaagtgc
    16321 gtcgtttctt gtgacttatc caccatctca atgcctgctc atcaaaaaat tgttccagaa
    16381 gtgtaacaga ttgggcgtcg atgccctaga tttctacccg gcttaactac ccctaatggg
    16441 ctagcgcgac tgctgattat attcatcatc gcgttgataa gcttcatcat tcggctgctc
    16501 cggaaccgac cgaagtcgat actcttcatc ctggctcacc gcctgttcag ccaaatccgg
    16561 attaatctcg cgtttaattt ctactcctaa accgcgaaac gcttctgcct gcgccagcac
    16621 atttccgcga cctgaagaga gttttttcat tgcctggcgg tagttatcct gcgctttgtc
    16681 gagactttga ccaatcgcgg acatgtcatc gatgaacaaa cgcatcttgt cgtacagctt
    16741 gctggcacga tcggcgattt gctgggcgtt gcggctttga tgctcataac gccacaggtt
    16801 ggcaatagta cgcaacgcca ccagcagcgt agtcgggcta accagcatga tattgttttt
    16861 caacgcttcg gtgatcagct ccggctggcg gtcaagcgcc agtaaaaaag cgggttcaac
    16921 gggaataaac atcagcacgt aatccagagt tcgcagcccc ggcagctgtt gataatcttt
    16981 gcgtcccagc aaacggatat ggttacgcac cgacgcgata tgttcctgta gcgcgctttc
    17041 gcgggtgtag tcgtcttcgg cgttaaaata gcgttcatag gcgaccagcg tcattttggc
    17101 gtcgatcacc acatcttttc cctgcggcag ccgcacgatg acatccggct gcatccgcga
    17161 gcgggcgtca ttttcgatgc tgacctgggt ttcatattca tacccttcac gcagaccgga
    17221 agcctccagc acccgcgtca atactacctc gccccagttg ccctgggttt tattgtcgcc
    17281 tttcagcgcg cgcgtcaggt tgatcgcttc ctgggccatt tgcgcgttga gttgctggag
    17341 attgcgaatt tcgtgggtca gggtatggcg ttcttgtgct tctttaccga agctgtcctg
    17401 aacctgacgg cggaaaccgt ccagttgttc acgtagcggc gacaacaggc tgttcagact
    17461 ctgacggttt tgctcatcaa cccggcgatt gctgtgctca aaaatacggt tggcgaggtt
    17521 ttcaaactgc tcactgaggc gctgctcgct gttaatcatc tggcgaattt tatcgtcagc
    17581 atgttgctgt gcggcttcca tccgcgtggt tacttcacgc agatcggcct ccagagaggt
    17641 gttaatactt tgcaggctgc gcacttcgtt attgagtaac tcgcactctg cacgccagtg
    17701 ctcgctttgg gtaatttgtt gttttgccgc gcttaactcc gcgaccatct cttcacgttc
    17761 agctaattgc tcggcttttt gctgcgcatg ttgataactg gcaaacagcc agccaattgc
    17821 cacacccacc aacgcaataa ctgcgtaaac catgattgag aaatccacaa cgcctcctga
    17881 cgcaacaact tacccgcaca aaatagaatt gtgctgtaca aacgtccagt tggaaaggca
    17941 tttcctgcga ggcgctacgc aaaaatacaa aaggccgaac gcgtcggcct tcagacagga
    18001 gaagagaatt acagcagacg acgcgccgct tccaccacga ttttcaccgc ttggctttca
    18061 gtttgtttca tcgtctcagc attcgggatc tcttgctggg tgcggttaac gataacaccc
    18121 gctaccatac cggcacgcag gccctgactt gcacacatgg tcagcagggt tgcagattcc
    18181 atttcatagt tcattacgcc catcgcctgc cactcttcca tagaaccttt aaagtgacga
    18241 actacgcgac cagagtaagt atcgtaacgt tcctggcctg ggtagaaggt atcagaagaa
    18301 gctgtcacgc caacgtgagt tgtcgcgcca atggatttcg cagcttcaac cagcgcagtc
    18361 gtacattcga aatcagcgac agccgggaat tccagcggtg cgaagtgcag gctcgcgcca
    18421 tccagacgga cagacgccgt ggtaaccagg acatcaccca cattaatatg cggctgaata
    18481 gcgcccgttg taccgatacg caggaaggtg cgaatgccca gctgtgccag ctcttcaaca
    18541 gcaatagagg tagacgggcc gccgataccg gtagagcaga cgataacagg tttaccatcc
    18601 agctctgcac gccaggtggt gaattcgcgg tgagatgcca gcttaaccgg cttatccatc
    18661 agcgcggcga tcttttccac acgatccggg tcgccaggga cgatggcaag cgtagcccct
    18721 tgtaaatcgt ttttagtgag gccgagatga aaaacatcag acttggacat atacaactcc
    18781 tctgtgaatc ggtttagtca gaagaagcaa aaagacactt taccgaaggg tttaacattt
    18841 tttcgtgata ctcatcacca tgacgcaaat gcgttgcata aatttaccca ccaaaagtga
    18901 tgcaaatcac ataaatcact cttcattctg caggactgca taaaagatga gccgattcag
    18961 gcaatgtgat ttgttgcatg ctgactatag ttaacattgc gcaacatttt tataagggta
    19021 cggagaatac catggcaaca acacaacaat ctggatttgc acctgctgca tcgcctctcg
    19081 cttcgaccat cgttcagacc ccggacgacg cgattgtggc gggcttcacc tctatccctt
    19141 cacaagggga taacatgcct gcttaccatg ccagaccaaa gcaaagcgat ggcccactgc
    19201 cagtggtcat tgtagtgcag gaaatttttg gcatgcatga acatatccgc gacatttgtc
    19261 gccgtctggc gctggagggg tatctggcta tcgcacctga actttacttc cgcgaaggcg
    19321 atccgaatga ttttgccgat atccccacgt tgcttagcgg tctggtagca aaagtgcctg
    19381 actcgcaggt gctggccgat ctcgatcatg tcgccagttg ggcttcccgc aacggcggcg
    19441 atgttcatcg tttaatgatc accggattct gctggggtgg acgtatcacc tggctgtatg
    19501 ccgcgcataa tccacagcta aaagctgcag tggcgtggta cggcaaactg acgggcgaca
    19561 agtcgctaaa ttcaccgaaa caacctgttg atatcgcaac cgatcttaac gcgccggttc
    19621 tcggcttata tggtggtcag gataacagca ttccgcagga gagcgttgaa accatgcgcc
    19681 aggcgctgcg ggctgctaat gcgaaagcag agattatcgt gtacccggac gccgggcatg
    19741 cattcaacgc tgattatcgc ccgagctatc atgccgaatc tgcgaaagat ggctggcagc
    19801 gtatgctgga atggtttaag cagtatggtg ggaagcggag ttagtttcct cttagtctat
    19861 atttgagatg gtgagtgaac gagtgcgttt tgctgccatc tctgtccccc aaaaaataat
    19921 cagtatgaat tgattggaga ttacgactcc gctatttgac cttaagaagg tcggcaagtc
    19981 atagtcataa atgagtctct tcaatggaag acaccttaga gatttaccat ctactcccat
    20041 tcacaaacaa acattaatta ttatcaacac attcacatta attataaatc atctcagacc
    20101 ttcctgataa aaagatatta aagtgaaaca ttttgttttt cacattttag ttcatcactt
    20161 ttaggcgtaa ataaaggtaa aaaaaacaac aatactattt ctctttcaca aaagaattaa
    20221 caaaaggttt tttaaggatg agtgatatta tttacttgac cataaccgga gaacaacaag
    20281 gatgtatttc ctctctttgt ggaacgagcg catcaatagg taatcgctgg cagattggcc
    20341 atgaagatga aatcttcgcg ttctcgctct ctaatagtat tacgaatgca ggcaaagggt
    20401 cacaattgca tggccttagt ttctgtaaat tcttattaac gctattaaca ataacgagca
    20461 gttgttcatg gcgtttgact tctatcggat caatagattt ggtcgatggg agaaatatta
    20521 caacattcaa ctccgcggcg cgctcttatc agcaatcaat cacctgttta ctgagaacaa
    20581 tctggataca gaagccatca ctgtcagtta tgaatatata ctctccaggc atctgattgc
    20641 taatactgaa tttagttatt tggcatttcc cgataactac aaccgtctgt ttataccacg
    20701 gccaaaaact aaagctggta atggttcaaa acacttaata gtaaagcggt tggcagactg
    20761 cttgctgctg gcggcatata caatgggaat atcgaaggat tcagggaaac agcagacaag
    20821 ttggggggag atgcacctgc tggttacgat caatttatgg ataacaaagg gttactcatc
    20881 gctggtgctt caatagttgc tggagcagtt ctggggagaa tgagactccc tgatttggaa
    20941 tcacttgagc atttcggagc cagaggagca gtatcaggaa
//
LOCUS       DADMJB010000058        20730 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.058, whole genome shotgun sequence.
ACCESSION   DADMJB010000058 DADMJB010000000
VERSION     DADMJB010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20730)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20730)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20730
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.058"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..260)
                     /locus_tag="JN078_001954"
     CDS             complement(<1..260)
                     /locus_tag="JN078_001954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041173.1"
                     /translation="MNRFVVAEPLWCTGCNTCLAACSDVHKTQGLQQHPRLALAKTST
                     ITAPVVCHHCEEAPCLQVCPVNAISQRDDAILRCTGNSGHYH"
     gene            complement(513..983)
                     /gene="bcp"
                     /locus_tag="JN078_001955"
     CDS             complement(513..983)
                     /gene="bcp"
                     /locus_tag="JN078_001955"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HAY9041174.1"
                     /translation="MNPLKAGDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTP
                     GCTVQACGLRDNMDELKKAGVDVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVCEQ
                     FGVWGEKSFMGKTYDGIHRISFLIDADGKIEHVFDDFKTSNHHDVVLNWLKEHA"
     gene            complement(983..1555)
                     /locus_tag="JN078_001956"
     CDS             complement(983..1555)
                     /locus_tag="JN078_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system transcriptional
                     repressor"
                     /protein_id="HAY9041175.1"
                     /translation="MTLSSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML
                     GEEFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMKRTTARPRPPMPASVWVQVDV
                     ADSPHLIERFTALFDAHHMNIAELVSRTQPAENERAAQLHIQITAHSPASADAANIEQ
                     AFKALCTELNAQGSINVVNYSQHDEQDGVK"
     gene            1701..2579
                     /gene="dapA"
                     /locus_tag="JN078_001957"
     CDS             1701..2579
                     /gene="dapA"
                     /locus_tag="JN078_001957"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001311023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HAY9041176.1"
                     /translation="MFTGSIVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGT
                     TGESATLNHDEHADVVMMTLELADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLT
                     VTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGI
                     KEATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQLGGHGVISVTANVAARDMAQMC
                     KLAAEGHFAEARVINQRLMPLHNKLFVEPNPIPVKWACKELGLVATDTLRLPMTPITD
                     SGRETVRAALKHAGLL"
     gene            2596..3630
                     /gene="bamC"
                     /locus_tag="JN078_001958"
     CDS             2596..3630
                     /gene="bamC"
                     /locus_tag="JN078_001958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708316.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamC"
                     /protein_id="HAY9041177.1"
                     /translation="MAYSVQKSRLAKVAGVSLILLLAACSSDSRYKRQVSGDEAYLEA
                     APLAELHAPAGMILPVTSGDYAIPVTNGSGAVGKALDIRPPAQPLALVSGVRTQFTGD
                     TASLLVENGRGNTLWPQVVSVLQAKNYTITQRDDAGQTLTIDWVQWNRLDEDEQYRGR
                     YQISVKPQGYQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNVISAGLDKSASDAAN
                     AAQNRASTTMDVQSAADDTGLPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNM
                     AVTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDAL
                     VAVFQAAFSK"
     gene            3843..4556
                     /gene="purC"
                     /locus_tag="JN078_001959"
     CDS             3843..4556
                     /gene="purC"
                     /locus_tag="JN078_001959"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HAY9041178.1"
                     /translation="MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFD
                     RKGMVNNKFNYFIMSKLAEAGIPTQMERLLSDTECLVKKLDMVPVECVVRNRAAGSLV
                     KRLGIEEGIELNPPLFDLFLKNDAMHDPMVNESYCETFGWVSKENLARMKELTYKAND
                     VLKKRFDDAGLILVDFKLEFGLYKGEVVLGDEFSPDGSRLWDKETLEKMDKDRFRQSL
                     GGLIEAYEAVARRLGVQLD"
     gene            4724..5587
                     /locus_tag="JN078_001960"
     CDS             4724..5587
                     /locus_tag="JN078_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HAY9041179.1"
                     /translation="MRWQGRRESDNVEDRRNSSGGPSMGGPGFRLPSGKGGLILLIVV
                     LVAGYYGVDLTGLMTGQPVSQQQSTRSISPNEDEAAKFTSVILATTEDTWGQQFEKMG
                     KTYQQPKLVMYRGMTRTGCGAGQSIMGPFYCPADGTVYIDLSFYDDMKDKLGADGDFA
                     QGYVIAHEVGHHVQKLLGIEPKVRQLQQNATQAEVNRLSVRMELQADCFAGVWGHNMQ
                     QQGVLETGDLEEALNAAQAIGDDRLQQQSQGRVVPDSFTHGTSQQRYSWFKRGFDSGD
                     PAQCNTFGKSI"
     gene            5602..7617
                     /locus_tag="JN078_001961"
     CDS             5602..7617
                     /locus_tag="JN078_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(Met) cytidine acetyltransferase"
                     /protein_id="HAY9041180.1"
                     /translation="MAELTALYTLTAQMKREGIRRLLVLSGEEGWCFDHALKLRDALL
                     GDWLWISPQPDAENHCSPSALQTLLGREFRHAVFDARHGFDAAAFAALSGTLKAGSWL
                     VLLLPVWEEWENQPDADSLRWSDCPDPIATPHFVQHLKRVLTADNDAILWRQNQPFSL
                     AHFTPRTDWHPATGAPQPEQQQLLQQLLTMPPGVAAVTAARGRGKSALAGQLISRIAG
                     SAIVTAPAKAATDVLAQFAGEKFRFIAPDALLASDEQADWLVVDEAAAIPAPLLHQLV
                     SRFPRTLLTTTVQGYEGTGRGFLLKFCARFPHLHRFELQQPIRWAQGCPLEKMVSEAL
                     VFDDENFTHTPQGNIVISAFEQTLWRSEPETPLKVYQLLSGAHYRTSPLDLRRMMDAP
                     GQYFLQAAGENEIAGALWLVDEGGLSQQLSQAVWAGFRRPRGNLVAQSLAAHGSNPLA
                     ATLRGRRVSRIAVHPARQREGVGQQLIASALQYTQDLDYLSVSFGYTGELWRFWQRCG
                     FVLVRMGNHREASSGCYTAMALLPMSDAGKQLAEREHYCLRRDAQALAQWNGETLPVD
                     PLNDIVLSDDDWLELAGFAFAHRPLLTSLGCLLRLLQTSELALPALRGRLQKNASDAQ
                     LCTTLKLAGRKMLLVRQREEAAHALFALNDVRTERLRDRITQWQFFH"
     gene            7691..8389
                     /gene="ypfH"
                     /locus_tag="JN078_001962"
     CDS             7691..8389
                     /gene="ypfH"
                     /locus_tag="JN078_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311362.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HAY9041181.1"
                     /translation="MKHDHFVVQSPDKPVQQLLLLFLGVGDNSVAMGEIGSWFAPLFP
                     DALVVSVGGAEPSGNPAGRQWFSVQGITEDNRQARVDAIMPTFIETVRYWQKQSGVGA
                     NATALIGFSQGAIMALESIKAEPGLASRVIAFNGRYASLPETASTATTIHLIHGGEDP
                     VIDLAHAVAAQEALISAGGDVTLDIVEDLGHAIDNRSMQFALDHLRYTIPKHYFDEAL
                     SGGKPGDDDVIEMM"
     gene            complement(8499..8699)
                     /locus_tag="JN078_001963"
     CDS             complement(8499..8699)
                     /locus_tag="JN078_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpfN family protein"
                     /protein_id="HAY9041182.1"
                     /translation="MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPP
                     HRDFNDKWDDDDDWPKKDQPKK"
     gene            complement(8727..9854)
                     /gene="dapE"
                     /locus_tag="JN078_001964"
     CDS             complement(8727..9854)
                     /gene="dapE"
                     /locus_tag="JN078_001964"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020078199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HAY9041183.1"
                     /translation="MSCPVIELTQQLIRRPSLSPDDAGCQALLIERLQAIGFTVERMD
                     FADTQNFWAWRGQGETLAFAGHTDVVPPGDADRWINPPFEPTIRDGMLFGRGAADMKG
                     SLAAMVVAAERFVAQHPNHTGRLAFLITSDEEASAHNGTVKVVEALMARNERLDYCLV
                     GEPSSIEVVGDVVKNGRRGSLTCNLTIHGVQGHVAYPHLADNPVHRAAPFLNELVAIE
                     WDQGNEFFPATSMQIANIQAGTGSNNVIPGELFVQFNFRFSTELTDEMIKAQVLALLE
                     KHQLRYTVDWWLSGQPFLTARGKLVDAVVNAVEHYNEIKPQLLTTGGTSDGRFIARMG
                     AQVVELGPVNATIHKINECVNAADLQLLARMYQRIMEQLVA"
     gene            complement(9858..10214)
                     /locus_tag="JN078_001965"
     CDS             complement(9858..10214)
                     /locus_tag="JN078_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family reductase"
                     /protein_id="HAY9041184.1"
                     /translation="MVTLYGIKNCDTIKKARRWLEANNIDYRFHDYRVDGLDSELLNG
                     FINELGWEALLNTRGTTWRKLDETTRNKITDAASAAALMTEMPSIIKRPLLCAPGKPM
                     LLGFSDSSYQQFFHEV"
     gene            10595..10654
                     /gene="ypfM"
                     /locus_tag="JN078_001966"
     CDS             10595..10654
                     /gene="ypfM"
                     /locus_tag="JN078_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YpfM"
                     /protein_id="HAY9041185.1"
                     /translation="MIERELGNWKDFIEVMLRK"
     gene            complement(10753..13861)
                     /gene="acrD"
                     /locus_tag="JN078_001967"
                     /pseudo
     CDS             complement(10753..13861)
                     /gene="acrD"
                     /locus_tag="JN078_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416965.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease AcrD"
     gene            complement(14024..15724)
                     /gene="narQ"
                     /locus_tag="JN078_001968"
     CDS             complement(14024..15724)
                     /gene="narQ"
                     /locus_tag="JN078_001968"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarQ"
                     /protein_id="HAY9041186.1"
                     /translation="MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAIN
                     IAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHL
                     NANWLEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIG
                     IFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTSLPNELGLLAKTFNQM
                     SSELHKLYLSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRD
                     NEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLN
                     SVSSMLGRGLYFNQAQKHFQHLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP
                     EDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAK
                     LTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD
                     NGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQLM
                     "
     gene            15930..17909
                     /gene="aegA"
                     /locus_tag="JN078_001969"
     CDS             15930..17909
                     /gene="aegA"
                     /locus_tag="JN078_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent uric acid utilization protein
                     AegA"
                     /protein_id="HAY9041187.1"
                     /translation="MNRFIMANSQQCLGCHACEIACVMAHNDEQHVLSQHHFHPRITV
                     IKHQQQRSAVTCHHCEDAPCARSCPNGAIRHVDDSIQVNQQKCIGCKSCVVACPFGTM
                     QIVLTPVAAGKVKATAHKCDLCAGRENGPACVENCPADALQLVTDVALSGMAKSRRLR
                     TARQEHQPWHASTAAQEMPVMSKVEQMQATPARGEPDKLAIEARKTGFDEIYLPFRAD
                     QAQREASRCLKCGEHSVCEWTCPLHNHIPQWIELVKAGNIDAAVELSHQTNTLPEITG
                     RVCPQDRLCEGACTIRDEHGAVTIGNIERYISDQALAKGWRPDLSHVTKVDKRVAIIG
                     AGPAGLACADVLTRNGVAVTVYDRHPEIGGLLTFGIPSFKLDKSLLARRREIFSAMGI
                     HFELNCEVGKDVSLDSLLEQYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTK
                     QVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG
                     SKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPVEG
                     SEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTTNPKIFAGG
                     DAVRGADLVVTAMAEGRHAAQGIIDWLGVKSVKSH"
     gene            17977..18552
                     /gene="nudK"
                     /locus_tag="JN078_001970"
     CDS             17977..18552
                     /gene="nudK"
                     /locus_tag="JN078_001970"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose pyrophosphatase NudK"
                     /protein_id="HAY9041188.1"
                     /translation="MTQQITLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDR
                     GNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDNDEPEVCIRKEAI
                     EETGYEVGEVRKLFELYMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPF
                     SQALEMIKTGEIRDGKTVLLLNYLQTSHLMD"
     gene            18678..19721
                     /locus_tag="JN078_001971"
     CDS             18678..19721
                     /locus_tag="JN078_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1176 domain-containing protein"
                     /protein_id="HAY9041189.1"
                     /translation="MRYRIFLLFFFALLPTSLVWAAPAQRAFSDWQVTCNNQNFCVAR
                     NTGDHNGLVMTLSRSAGAHTDAVLRIERGGLKSPEASEGEIAPRLLLDGEPLALSGDK
                     WRISPWLLVTDDTATITAFLQMIQEGKAITLRDGNQTISLSGLKAALLFIDAQQKRVG
                     SETAWIKKGDEPPLSVPPAPALKEVAVVNPTPTPLSLEERNDLLDYGNWRMNGLRCSL
                     DPLRREVNVTALTDDKALMMISCEAGAYNTIDLAWIVSRKNPLASRPVRLRLPFNNGQ
                     ETNELELMNATFDEKSRELVTLAKGRGLSDCGIQARWRFDGQRFRLVRYAAEPTCDNW
                     HGPDAWPTLWITR"
     gene            complement(19831..20726)
                     /locus_tag="JN078_001972"
                     /pseudo
     CDS             complement(19831..20726)
                     /locus_tag="JN078_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001300650.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
BASE COUNT         5008 a         5300 c         5549 g         4873 t
ORIGIN      
        1 aaatggtagt gtccgctatt gccagtacac ctcaggatcg catcatccct ctgggagatg
       61 gcattgaccg ggcagacctg caggcaaggg gcttcctcac agtgatgaca cacgacaggg
      121 gcagtgattg ttgacgtctt cgccagggcc aggcgcgggt gttgctgtaa accttgcgtt
      181 ttatgcacgt ccgaacaggc agcgagacag gtattacatc ctgtacacca cagtggttcg
      241 gccaccacaa agcggttcat gtcggctcct tgaaaatgat atgaaacatt gcatttcata
      301 ttgcataaag gatgccagtc tgattaattt aatatattca ataaattatg tattaacagg
      361 gttctgaacg gtacaaaaat gatggtcatt aacgttcagc aaaaaatgga ttcgacaccc
      421 gtgtcgcagg ggaaagcgag aatgtgatct tgatcacgag aagtgaggtg tgctgaccgc
      481 aagcgcagcc agcacggaat ggagcaaagt aatcaggcgt gttctttcag ccagttcagc
      541 acaacgtcgt ggtgattgct ggttttaaaa tcgtcaaaga catgttcgat tttgccatca
      601 gcgtcaatca ggaagctgat gcgatgaata ccatcgtagg ttttgcccat gaaggacttt
      661 tcaccccaga cgccgaattg ttcgcacacc tggtggtcct catcagacag gagcgtaaag
      721 ttaagcagct ctttttccgc aaaacgggag agtttttcgg gtttatcggt gctgataccc
      781 agcacatcaa cgcccgcttt tttcaactca tccatgttat cgcgtaagcc gcaggcctgt
      841 acggtacagc cgggggtcat ggctttcggg tagaaataaa ccagaacacg ctgtccctgg
      901 aagtcggtca aattaacttg ttctccgtct tgatccggca agctaaattt cggtgcgata
      961 tcaccggctt tcagtggatt cattacttaa ctccatcctg ttcatcatgt tgggaataat
     1021 tgacgacgtt aatactgcct tgtgcattga gttctgtaca tagggctttg aacgcttgct
     1081 caatatttgc tgcgtccgca gatgcggggc tgtgggcggt gatctgaata tgcaactgcg
     1141 cagcccgttc attttcagca ggttgcgtgc gcgacaccag ctccgcaatg ttcatatgat
     1201 gcgcgtcgaa aagtgctgtg aagcgttcaa ttaaatgcgg ggagtctgca acatcgacct
     1261 gaacccagac agatgctggc attggcggac gcggacgcgc cgtcgtgcgc ttcatcacga
     1321 ttaaaagatc cagttcggca cctttcaacg gtaacgttga ttcaatcaga gtaatggcat
     1381 tccatgaacc ggaaagcagc atgataaacg tgaactcttc tcccagcatc gccaggcgac
     1441 tgtcttcaat attacagccg caactactga catgacgggt gatggtgttc acaattccag
     1501 ggcgatcggc acccaacgca gtgatcacca gataatgttg cgatgacagt gtcaaactgg
     1561 ttattccttt aaggggtgag ttgttcttaa ggaaagcata aaaaaaacat gcatacaaca
     1621 atcagaacgg ttctgtctgc ttgcttttaa tgccatacca aacgtaccat tgagacactt
     1681 gtttgcacag aggatggccc atgttcacgg gaagtattgt cgcgattgtt actccgatgg
     1741 atgaaaaagg taatgtctgt cgggctagct tgaaaaaact gattgattat catgtcgcca
     1801 gcggtacttc ggcgatcgtt tctgttggca ccactggcga gtccgctacc ttaaatcatg
     1861 acgaacatgc tgatgtggtg atgatgacgc tggagctggc tgacgggcgc attccggtga
     1921 ttgccgggac cggtgctaac gctactgcgg aagccattag cctgacgcag cgcttcaatg
     1981 acagcggtat cgtcggctgc ctgacggtaa ccccttacta caatcgtccg tcgcaagaag
     2041 gtttgtatca gcatttcaaa gccatcgctg aacatactga cctgccgcaa attctgtata
     2101 atgtgccgtc ccgtactggc tgcgatctgc tcccggaaac ggtgggccgt ctggcgaaag
     2161 taaaaaatat tatcggaatc aaagaggcaa cagggaactt aacgcgtgta aaccagatca
     2221 aagagctggt ttcagatgat tttgttctgc tgagcggcga tgatgcgagc gcgctggact
     2281 tcatgcaatt aggcggtcat ggggttattt ccgttacggc taacgtcgca gcgcgtgata
     2341 tggcccagat gtgcaaactg gcagcagaag ggcattttgc cgaggcacgc gttattaatc
     2401 agcgtctgat gccattacac aacaaactat ttgtcgaacc caatccaatc ccggtgaaat
     2461 gggcatgtaa ggaactgggt cttgtggcga ccgatacgct gcgcctgcca atgacaccaa
     2521 tcaccgacag tggtcgtgag acggtcagag cggcgcttaa gcatgccggt ttgctgtaaa
     2581 gtttagggag atttgatggc ttactctgtt caaaagtcgc gcctggcaaa ggttgcgggt
     2641 gtttcgctta ttttattact cgctgcctgt agttctgact cacgctataa gcgtcaggtc
     2701 agtggtgatg aagcctacct ggaagcggca ccgcttgcgg agcttcatgc cccggctgga
     2761 atgattttgc cggtgacctc cggtgattat gcaatcccgg tgaccaacgg tagtggtgct
     2821 gtcggtaagg cgctggacat tcgtccacca gcccagccgc tggcactggt ttctggcgtg
     2881 cgtacccagt tcacgggcga taccgcttca ttgctggtgg aaaatggtcg tggcaatact
     2941 ctgtggccgc aggtggttag cgtgctgcag gcgaaaaact acaccatcac ccaacgtgat
     3001 gatgctggtc agacactgac catcgattgg gtacaatgga accgtctgga cgaagacgag
     3061 cagtatcgtg gtcgttatca aatctctgtt aagccgcagg gttatcagca ggcggttacg
     3121 gttaaactgc tgaacctgga acaggcgggc aaaccggttg cagacgcggc ttccatgcag
     3181 cgttacagca cggagatgat gaacgttatt tccgccggtc tggataaatc tgcctctgac
     3241 gccgcgaacg ctgcgcaaaa tcgtgcctcc accactatgg acgtacaaag tgcagctgat
     3301 gacaccggtt taccgatgct ggtcgtacgc gggccgttca atgtggtttg gcaacgtctg
     3361 ccagcggcgc tggaaaaagt gggcatgaaa gtgaccgaca gcacccgttc gcagggtaac
     3421 atggccgtaa cttataagcc gctgtctgac agcgactggc aggaactggg cgcgagcgat
     3481 ccaggcctgg catccggtga ctataaattg caggttggcg atttagataa ccgcagcagc
     3541 ctacagttca tcgatccgaa aggtcatact ctgactcaga gtcagaacga cgcgctggta
     3601 gctgtcttcc aggctgcgtt tagcaagtaa aaatataggg ctggagtcat ccggcccttt
     3661 tttctgatat gatacgcaaa cgtgtgcgtc ggcagaaaaa tgcaatttta gcggtaattc
     3721 gcacgaaatt tgtttgtcgg acgtaggtcg gataaggcgt tcttgccgca tccgacaaaa
     3781 catccggcac accagacagc aaaagatttt aaaacgttaa ttcacaccca ggagtgataa
     3841 agatgcaaaa gcaagctgag ttgtatcgtg gtaaagcgaa aaccgtatac agcacggaaa
     3901 acccggacct gttggtgctc gaattccgca atgatacgtc agcaggggat ggcgcgcgca
     3961 ttgagcagtt tgatcgcaaa ggtatggtga acaacaagtt caactacttc attatgagca
     4021 aactggctga agcgggtatc ccgactcaaa tggagcgtct gctctccgat accgaatgtc
     4081 tggtgaaaaa gctggatatg gtgccggttg agtgtgtcgt gcgtaaccgt gctgctggct
     4141 ctctggtgaa acgtcttgga atcgaagaag gtattgagct gaacccgccg ctgttcgatc
     4201 tgttcctgaa aaacgatgcc atgcacgatc cgatggtcaa cgaatcttac tgcgaaacct
     4261 ttggctgggt gagcaaagag aacctggcgc gtatgaaaga gctgacctac aaagcgaacg
     4321 acgtgctgaa aaaacggttc gatgatgctg gtctgattct ggtcgacttc aagctggagt
     4381 ttggtctgta caaaggtgaa gtggtactgg gcgatgagtt ctccccggac ggcagccgcc
     4441 tgtgggacaa agaaacactg gagaaaatgg acaaagaccg tttccgccag agcctcggtg
     4501 gcctgatcga agcctatgaa gccgtcgccc gccgcctggg tgtacagctg gactgatttt
     4561 tctgttcatc atcttgccgt gcagctggca cggcaagaca accgctctcg gaatatatgc
     4621 attgaacgct cattcctccg ccatttcatc ccgctttcct gtggtaatct tcctctgaac
     4681 cacctacgat catttctata atgaatatat tgttgaggta tctatgcgtt ggcaagggcg
     4741 acgtgaaagt gacaatgttg aagacaggcg caacagctcc ggtggtccgt ctatgggcgg
     4801 tcccggtttt cgcctgccaa gcggtaaagg cgggctgatt ttactgatag tcgtgctggt
     4861 tgcaggctac tatggtgttg atttaaccgg gttaatgact ggacagccgg tttcccaaca
     4921 acaatcaacg cggtccatta gccctaatga agacgaagct gcaaaattca cctcggtgat
     4981 tctggcaacc acggaagaca cctggggaca acagttcgag aagatgggta agacctatca
     5041 gcaaccgaag ctggtcatgt accgtggaat gacgcgcacc ggctgcgggg cgggccagtc
     5101 cattatgggg ccgttctatt gcccggcgga tggcacagtt tatatcgatc tctccttcta
     5161 tgatgacatg aaagacaaac ttggcgcgga tggcgatttt gcccaggggt acgttatcgc
     5221 ccatgaagtc ggtcatcatg tgcagaaact gttaggcatc gagccgaaag ttcgtcaact
     5281 gcaacaaaac gcgacgcagg cggaagtgaa ccgcttatct gtgcgtatgg aactccaggc
     5341 cgactgtttt gccggtgtct gggggcataa catgcagcag caaggcgttc tggaaaccgg
     5401 cgatctggaa gaggcgctga atgcggcgca ggccatcggc gatgaccgtt tacaacagca
     5461 aagtcagggg cgagtagtac cagacagttt cacacatggc acttctcagc aacgctacag
     5521 ctggtttaaa cgtggtttcg acagcggcga tccggcacaa tgcaatactt ttggtaaaag
     5581 catttaattt ccggggcagg gatggctgaa ctgactgcgc tttacacatt aacagcgcaa
     5641 atgaaacgtg aagggatccg ccgcttgctg gtgttgagcg gggaagaggg ttggtgtttt
     5701 gatcatgcgc ttaagttgcg tgatgcctta cttggcgact ggctgtggat ttcgccgcag
     5761 ccagatgctg aaaaccactg ttctccctcg gcgctacaaa ctttacttgg gcgcgagttc
     5821 cggcatgcgg tattcgacgc ccgccacggc tttgatgccg ctgcctttgc ggcacttagc
     5881 ggaacgttga aagcgggaag ctggctggtt ttgttactcc ctgtatggga agagtgggaa
     5941 aaccaacctg atgccgactc gctgcgctgg agtgattgcc ctgaccctat tgcgacgccg
     6001 cattttgtcc agcatctcaa acgcgtactt acggcggata acgacgctat tctctggcgg
     6061 caaaaccagc cgttctcgtt ggcgcatttt actccccgta ctgactggca ccccgcgacc
     6121 ggcgcaccac aaccagaaca acagcaactc ttacagcagc tactgaccat gccgccgggc
     6181 gtggcagcgg taacggctgc gcgtgggcgc ggtaagtcgg cgctggcagg gcaactcatt
     6241 tctcgtattg cgggcagtgc gattgtcacc gcgcccgcaa aagcggcaac ggatgtactg
     6301 gcacaatttg cgggcgagaa gtttcgcttt attgcgccgg atgccttgtt agccagcgat
     6361 gagcaagccg actggctggt ggtcgatgaa gccgcagcca tacctgcgcc gttgttgcat
     6421 caactggtat cgcgttttcc tcgaacgttg ttaaccacta cggtgcaggg ctacgaaggc
     6481 accggacgtg gttttttgct gaaattttgc gctcgctttc cgcatttaca ccgttttgaa
     6541 ctgcaacagc cgatccgctg ggcacaggga tgcccgctgg aaaaaatggt tagtgaggca
     6601 ctggtttttg acgatgaaaa cttcacccat acaccacaag gcaatatcgt catttccgca
     6661 tttgaacaaa cgttatggcg aagcgagcca gaaacgccgt taaaggttta tcagttattg
     6721 tctggtgcgc actaccggac ttcgccgctg gatttacgcc ggatgatgga tgcaccaggg
     6781 caatattttt tacaggcggc tggcgaaaac gagattgccg gagcgctgtg gctggtggat
     6841 gaggggggat tatctcaaca actcagtcag gcggtatggg caggttttcg tcgcccgcgg
     6901 ggtaatctgg tggcccagtc gctggcggcg cacggtagca atccactggc agcgacattg
     6961 cgtggacggc gggtcagccg gatagcagtt catccggctc gtcagcgcga aggcgttggg
     7021 caacagctca ttgccagcgc tttgcaatat acgcaagacc tcgactatct ttcggtgagt
     7081 tttggttaca ccggggagtt atggcgtttc tggcaacgct gcggttttgt gctggtacga
     7141 atgggtaatc atcgtgaagc cagcagtggt tgctatacgg cgatggcgct gttaccgatg
     7201 agtgatgcgg gtaaacagct ggctgaacgt gagcattact gtttacgtcg cgatgcgcaa
     7261 gctctcgcgc agtggaatgg cgaaacactt cctgttgatc cactaaacga tatcgtgctt
     7321 tctgacgacg actggcttga actggccggt tttgcttttg ctcatcgtcc gctattaacg
     7381 tcgttaggtt gcttattgcg tctgctacaa accagtgaac tggcattacc ggcgctgcgt
     7441 gggcgtttac agaaaaatgc cagtgatgcg cagttatgta ccacacttaa acttgcaggc
     7501 cgcaagatgt tactggtccg tcagcgggaa gaggccgcgc atgcgctgtt cgcacttaat
     7561 gatgttcgca ctgagcgtct gcgcgatcgc ataacgcaat ggcaattttt tcactgactc
     7621 cttcaatttt ctcccatggt cattgtgagc cagcggcgta aaattaatga catcagttaa
     7681 ggagttcgcc atgaaacatg accattttgt tgttcaaagc ccggataaac ctgtgcaaca
     7741 gttgttactg cttttcctcg gtgtcgggga taactcggtg gcaatggggg aaataggcag
     7801 ttggtttgca ccgctgtttc ctgatgcgct ggtggtgagt gtcggtggcg cggagccgag
     7861 cggtaatccg gcggggcgtc agtggttttc ggtgcagggt attacggaag ataatcgcca
     7921 ggcgcgtgtg gatgccatca tgccgacgtt tattgaaacg gtacgctact ggcagaaaca
     7981 gagtggagta ggggctaacg ccacggcgtt aatcggtttc tctcaaggcg cgattatggc
     8041 gctggagagt attaaagccg aaccgggcct tgcttcacgc gtcattgctt ttaacggacg
     8101 ctatgcgagc ctgccggaaa ccgcgtctac agcaacgaca attcacctga ttcatggcgg
     8161 tgaagatccg gttatcgatc tggcgcatgc ggttgcggcg caggaagcgt taatcagtgc
     8221 cggtggtgac gtgacgctgg atatcgtgga ggatttaggc catgcgatcg acaatcgcag
     8281 tatgcaattt gccctggatc acttgcgtta taccattccg aaacattatt tcgacgaagc
     8341 gctaagtggc ggtaagcctg gcgatgatga tgtgattgaa atgatgtaaa agacagatta
     8401 cctggcctga taagacgcgt gagcgtcgca tcaggcatcg ttcaccattg ccggatgcgg
     8461 cgttaacgcc ttatccggcc tacggttgag cactcagctt acttcttcgg ttgatccttt
     8521 ttcggccagt cgtcgtcatc gtcccactta tcgttgaaat cacgatgcgg gggaagctcc
     8581 ggcttgttgg cgagaaattt cttgtggtcg acgcgcttga gatctttaat cacgttcagc
     8641 aggacgccta ccaaaaagac aatcaccaga atccaccaat atttagccag ccagtccatg
     8701 cttatttcct cttgcagaac cactcatcag gcgacgagct gttccatgat acgttgatac
     8761 atacgggcaa gtagctgcag gtcggcagcg ttcacacatt cattaatttt atgaatagtg
     8821 gcattgaccg gcccgagttc caccacctgc gcccccatgc gagcaataaa gcgcccgtcg
     8881 gacgttccgc ctgtggtcag tagctgcggt ttaatttcat tatagtgctc aaccgcgtta
     8941 acgaccgcat ccaccagttt accgcgcgcg gtcaaaaatg gctgcccgga aagccaccaa
     9001 tccaccgtat agcgcagttg atgtttttca agcagggcaa gcacctgcgc tttgatcatc
     9061 tcatcagtca gttcggtgct gaagcggaag ttaaactgca caaacagttc acccggaata
     9121 acattgttac tgcccgttcc cgcctgaata ttagcaatct gcatactggt cgccgggaaa
     9181 aattcattgc cctgatccca ctcaatagcc actaattcat taaggaaagg tgctgcgcga
     9241 tgtactggat tgtcagccag atgcgggtag gccacatgcc cctgaacgcc atgaatggta
     9301 aggttgcagg ttaacgatcc gcgacgacca tttttcacca catcaccaac cacttcgata
     9361 ctcgacggtt cgccgaccag gcagtaatcg agacgctcat tacgtgccat caacgcttcg
     9421 acgactttta ccgtaccgtt gtgggcactg gcttcttcat cagaggtgat cagaaatgcc
     9481 agtcgccccg tatggttggg atgttgtgcg acaaagcgtt ctgccgctac caccatcgcc
     9541 gccagcgagc ctttcatatc tgccgcaccg cgcccgaata acatgccatc acgaatggtg
     9601 ggttcaaacg gcggattgat ccaacgatcg gcgtcgccag gcggcaccac gtcggtatgc
     9661 ccggcaaagg ctaacgtttc accttgccca cgccatgccc aaaaattctg cgtatcggca
     9721 aagtccatgc gttcaacggt aaaaccgatc gcctgcaaac gttcaatcaa caaagcctgg
     9781 catcctgcgt catcaggact cagggaaggg cggcgaataa gctgttgtgt cagctcaata
     9841 accgggcacg acatagacta cacctcatgg aaaaattgct gataactgga atcactgaaa
     9901 cccagcagca taggcttacc aggcgcgcag agcaatggac gtttgataat tgaaggcatt
     9961 tcagtcatta atgccgccgc agaggccgca tcggtgattt tattgcgggt ggtttcgtcc
    10021 agtttacgcc aggttgtacc acgggtgttc agtaacgctt cccagcctaa ttcgttgata
    10081 aaaccgttca ataattcgct gtccagccca tcgacgcggt aatcatgaaa acgatagtcg
    10141 atgttattgg cttccagcca acggcgagcc tttttaatgg tgtcacaatt tttgatgccg
    10201 taaagtgtaa ccataatgaa tcctttttcg atctatgaga ataaatactc atttaagggt
    10261 gaaaacattt tgcctgcaaa tgattatcag gaaatataac attatcgaag tattcaaatt
    10321 aacaactatt aaataatatt aaacattttt aacgtaaaca ttaagaatat tcatcttgtt
    10381 atctgtctgt attttaacca gaattaaatc agtattagat gccgtatgaa tatctcgaaa
    10441 tgttgctgtg tatcacatac aaattatcac cgcaggacca tagtatttac ataaggtttg
    10501 tcccccggag gtagtcatcg cagcaatcga gtaaattagc ttcaccacgg tatattgttt
    10561 ccgtagaata cccataatta taagagaggt tgttatgatt gaacgtgaac tggggaactg
    10621 gaaagacttt atcgaagtta tgcttcgtaa gtaattcctg agacaaagta caaacagcaa
    10681 gaacccgctg agcaggttct taatcggaaa gttgaaaaag gcgacacatt agcatgtcgc
    10741 cttttttatt gcttattccg ggcgcggctt cagcgggaag cggcggcgca ccagtacaaa
    10801 gaacagcggc acgaagtaaa tagccagaat agtggccgaa atcatcccgc ccattacgcc
    10861 agtacccacc gcatgctgac caccggaacc ggcacccgtg ctggttgcca ttggcaatac
    10921 gccgaagata aatgccagcg aggtcatcag aatcgggcgt aaacgctgac ggcaggcgtg
    10981 gagcgtcgct tcaaacaggt cgtggccttt ttggttcatc tcgttagcaa actcgacgat
    11041 caggatggcg tttttcgccg ataaaccaat gaccgttaac aggcccacct ggaagtaaac
    11101 gtcgttttcc agcccgcgca tccaggttgc cagcagcgcg ccgataaccc ccagcggcac
    11161 gaccagcatt accgagaacg gcaccgacca gctttcaacg ccgccagaca caggaatacc
    11221 accagcaagg aaatggcgta cagcgccgga gcctgcgcgc cggaaagccg ctcctgatac
    11281 gacatcgccg tccactccag accaaagccg tttggcaact gcttcactaa cgattccatt
    11341 atatccatcg ccgtaccggt actgaccccc ggtgcggctt ccccaacaat ctcaaccgca
    11401 gaataaccgt tatagcgttc cagacgcggc gagccagtct cccagcgtga ggtcgcgaaa
    11461 gcagagaagg gcaccatgcc gccatcttta tttcggacat accagagatt aatgtcatct
    11521 ggcagcatgc gatacggcgc agctgcctgc acatagactt tcttcacacg accgcgatcc
    11581 ataaagtcat tcacatagct cgaaccccag gcggtttgca gtgtgtcgtt aatatcgtcg
    11641 atagcaacgc ccagcgcctg agctttacgc tggtcgatat caatctgcaa ctgcggactg
    11701 tcatcgaggc cgttatggcg cacacgggtt agctccgggt tttccgccgc cagcgccagc
    11761 aactggttac gtgctgccat cagcgcatcg tgacctgctc cagcgtggtc ctgcaactcc
    11821 atatcaaaac ccgcagaact accaagaccg ctaattgctg gcgggctgct ggcgataacg
    11881 cgagcttctt taatcttgtt aaacgccttt gttgcacgct cgataatggc aaacgaggtg
    11941 ccggtcttac tgtcgcgttc gctccagtct ttcaggcgga taaacattcg cgccacgttt
    12001 tgcccgttac ccccagggcc agaaccaacg gtggcaaaca ccgacatgat gttgtctttt
    12061 tcatgggtga agtaatattt ctcgatttgc tcaacgactt tcagggtctg ttgttgggtt
    12121 gaaccgctgg gcaattgtac cgaggtagta aacatgccac ggtcttccag cggtaagaac
    12181 gacgtcggca aacgcaggaa caggaacacc atgccgccaa gcagcaggac ataaatcaca
    12241 atccagcgca ggctgcggtg gagaattttc gccacccctt tttcgtagcg ttcggcgttg
    12301 cggttaaaca tctggttaaa ccaggcaaaa aagccttttt gcccgtgatg ctcacctttt
    12361 ttcagtggct taagtagtgt ggcacacaga gccggagtga ggatcatcgc taccagtact
    12421 gacagcacca tcgccgcaac aatggtaata gagaactggc gatagatggc accggtggtg
    12481 ccgccgaaga aggccattgg tacaaatacc gccgaaagca ccatcgcaat cccgaccagt
    12541 gccccctgga tctgccccat cgatttacgt gtggcttcgc gaggagtgag tccttcctca
    12601 ctcataatac gttcgacgtt ttccaccacc acgattgcgt catccaccag cagaccgatc
    12661 gccagtacca tcgcgaacat ggttaaggtg ttgacgctgt aaccgaaggc gtaaagtacg
    12721 gagaaggttc ccatcaacac caccggcacg gcgatagtgg gtatcagcgt ggcgcggaag
    12781 ttttgcagga acagatacat aacgaggaaa accagggcga tagcttccag cagcgttttc
    12841 accacgtctt caatggaggc tttaacaaac gaggttgttt catacgccac cttgtattcc
    12901 agtccgtgcg ggaagtactg cgccagctcg tcgagacgat tgagcaccag ctccctgtcg
    12961 ccatttcgtt tgcgccggag gccagtttta cccccagccc ggaggctggc ttaccattga
    13021 agcggctaag ataatcgtat ttctccgccc ccatttcgac ggtggcgaca tcgcccagcc
    13081 ttacctctga gccgtcttga ttcacccgca aggtgatatc gcggaactgt tctggtgttt
    13141 gcagcagtga ctgggcgtta atggtggcgt tgagcgcctg cttatcgacg gaaggtgtac
    13201 caccaagttg cccaaccgca atctgcgcgt tctgtgactc aatggcatca gtgacatctt
    13261 tagccgtcat ctggaaactg ttgagtttcg ccggggccag ccagatacgc atggaatatt
    13321 gcgaaccata ggcatcgata tccccgacgc cattcacgcg gcttaacggg tcctgaatat
    13381 tactggcaac ataatcggca atatcctgtt tatccatcga accatcggta gagacgaaag
    13441 caatggtcag aatattggta tcgccggttt tacgcaccgt cacgccctga ttttgcaccg
    13501 cctgcggtaa ctttcgcatg gctgattgca gctggttttg tacttgctgc acggcttcgt
    13561 ccggatcggt gcctgcttta aaacttaaag tgacagatgc ctgaccggtg ccactgctct
    13621 gagatgacat atacatgaga ttatcgaggc cggtcatatt ttgctcgata acctggggca
    13681 cggtgttttc cagcgtctgg gccgatgcgc cgggatagtt agcggtcact cgcacattcg
    13741 gtggcgcgag atcggggtat tgttcaacgg gcaatgaaaa aatcgctagg gtccctgtca
    13801 gacacaacag gattgccagc acccaggcaa aaatggggcg atcaataaag aaattcgcca
    13861 ttaaaagagg acctcgtgtt tctgcgtatc gttgtaggct tgacttgctt cactgtagcg
    13921 gcaaggtacg agccaatcgt ggagaaaaaa ggagttaatg taaattatca tgccctttta
    13981 tactgaacct taagtgcaag tattctttgg tcagtaggag gcattacatc aactgacttt
    14041 cctcaccctc tgcagagcga aagctaatac tcactaacgt gccgccgccg gaaggttgtg
    14101 aaaaagtcag cgtcccaccc agccgttccg cgcgttcgcg catgatattc agaccataat
    14161 gaccttcggg ttctttcggt tcaccgatac caatcccgtt atcacggata taaaccgtgt
    14221 gattgccgtc cggcgcggtg acgcaactga cggcgatttc gctggcgttg gcgtgcttca
    14281 tcgcattcag caccgcttcg cgaataattt gcaacaaatg cacctgcatt tgcgcatcca
    14341 gcgcaagggt tggcagacgg cagtcgaggg tcagtttggc gctggtttga ttttgtaacg
    14401 tatccagcat ttccctcaac gcggagggga gatccgcctg ctgcagcgtc aggcggaaag
    14461 tagtcaacag ctcgcgtaac tgccgataag catcattcaa cgcctgggaa aaatcggcca
    14521 tgatactttg tgcggtggcg ttatcttccg gtatcgaacg cttcagtaac gtcaactgga
    14581 tacgtaagta agaaagtacc tgagccagcg agtcgtgcaa ttcgcgggcg atggttgcac
    14641 gttcttccat caacaataaa tgctgaaaat gcttctgcgc ctgattaaag tacaaaccgc
    14701 gtcccagcat cgacgaaacg ctgttaagca gcggttctga tgatgaaacg tgactatttt
    14761 gccagtgcag ttcgccgtaa accgtctctt gcattgtcac cggtaaaatc tgcatcggca
    14821 attccgggtt tggttgccct tcgctaatcc gccagttttc accgacattt aactccagat
    14881 attcagccgc ttcattgtcg cgaacaatct gcaaaatatg gcggaaacaa tgcacatcaa
    14941 tctggcttgt gttcagcgcc tgcgaacatt gatacaacac ctccagacga cgcttggcct
    15001 cgtggagatc gcgggtcttt tcttctactg acgcctccag cgaaaggtac aatttatgca
    15061 gctcgctcga catctggtta aaggtttttg caagcagacc aagctcattc ggcagactgg
    15121 tatccagcgg cggcgagtcg aactgcccgt gttcaatacg ttgactggcg gtaaccagct
    15181 gattcagcgg ggcaaccacc tgatggcgta tacggcgcaa agtaaaaaag accagcgtga
    15241 aaataccgat accgccagcc agggaaatcg ccaccaccag cagcattttg cgttcagcgt
    15301 agtgctgtaa agccagcacg aacaggtcta tctgattaac ataattatta atattggcct
    15361 gataccacgg caaatcgccc ttgctgagcc gattattcat ctccagccag ttggcattca
    15421 gatgcgcata gcgagttttt actgcttctg gcacatacca gacgttgaga ttggttaata
    15481 ccggtgaatg cagtgcctgc tgaaacaact ggcgatgtgc attgagttgt ggactgccac
    15541 tttgcaagtc gtagcccagg cggtaactct gcatacgcag cgatccggca atattgatag
    15601 cctcagcgtc gcgcaaactg ctcgccagag ttagcagagc gatacccgtg gaaagaatcg
    15661 acagcagcac aatgtaaaaa aaggcccggg ccagactggc cgagacgggt cgtttaacaa
    15721 tcacacgcgt cttctccaca aaaaatcatt aatgttccag ttcgctgaaa cgcaatttag
    15781 tcagtgatgg gattatttga gctgccacag tttatagcga aatagttact tattctgggc
    15841 acatgaacat tgccgattcc cctgtaagtc gggtaataac aacactcata taaagaataa
    15901 ggtttttaca accaaaaaag aaggtcgtta tgaatcgttt tattatggcc aacagtcagc
    15961 aatgtctggg ttgtcatgct tgtgaaatcg cctgtgtcat ggctcacaat gatgagcaac
    16021 atgtcctgag ccaacaccat tttcatcccc gaattacggt tatcaaacat cagcagcaac
    16081 gtagtgcagt gacctgtcac cattgtgaag atgcgccctg cgcccgtagc tgccctaatg
    16141 gcgcaatccg ccacgttgat gacagcattc aggtcaatca gcaaaagtgt attggctgta
    16201 aatcctgcgt ggtggcctgt ccgtttggta cgatgcaaat cgtcctgaca cccgtcgcgg
    16261 caggaaaagt aaaagccacg gcgcataaat gcgacctttg tgcagggcgc gaaaacggtc
    16321 ctgcctgtgt cgagaattgc ccggcggacg cgctgcaact ggtcactgac gtcgcactct
    16381 ccggcatggc gaaatcccgc cgcttgcgca ccgcacgtca ggagcatcaa ccgtggcatg
    16441 ccagtaccgc tgcacaagaa atgccggtaa tgagtaaagt cgaacaaatg caggcaacgc
    16501 ccgcgcgtgg cgagccggat aaactggcga ttgaagcgcg caaaaccggt tttgatgaaa
    16561 tttatctgcc atttcgcgcc gaccaggcac aacgggaagc ctcgcgctgc cttaagtgcg
    16621 gcgagcacag cgtttgtgaa tggacctgcc cgctgcataa ccatattccg cagtggattg
    16681 aactggtgaa agccggaaac atcgacgccg ccgtcgagct ttctcaccag accaacaccc
    16741 tgccggaaat taccggacgc gtttgtccgc aagaccgttt gtgtgaaggt gcctgtacta
    16801 ttcgcgatga gcacggcgcg gtaactatcg gcaacattga acgctatatt tcagatcagg
    16861 cgttggcgaa aggttggcgt cctgacttaa gtcatgtcac caaagtggac aagcgggtgg
    16921 cgattatcgg ggcaggtccg gcagggctgg cctgtgcgga tgttctgacc cgcaatggcg
    16981 tggcggtgac ggtgtacgat cgccatccag aaatcggtgg cttgctcact ttcggcattc
    17041 cttctttcaa actggataaa tccctgctgg cacgccgtcg ggaaatcttc agcgcgatgg
    17101 ggattcactt cgaactcaat tgtgaagtgg gtaaagatgt ctctttggat tcgcttttgg
    17161 aacaatacga cgcggtcttc gttggcgtag gcacttaccg ttccatgaaa gcgggtttac
    17221 ccaatgaaga tgcgccgggc gtttatgacg cgctgccgtt cctcatcgcc aacactaaac
    17281 aggtgatggg gctcgaagag ctaccggaag agccgtttat caataccgcc ggacttaacg
    17341 tcgtggtact gggcggcggc gacaccgcga tggactgtgt gcgtactgcg ctgcgccacg
    17401 gcgcgagtaa cgtcacctgc gcttatcgtc gtgatgaagc taacatgcca ggctcgaaga
    17461 aagaggtgaa gaacgcccgc gaagaggggg ccaacttcga atttaacgtc cagccggtgg
    17521 cgcttgagct gaatgaacaa ggtcacgttt gcgggattcg tttcctgcgc acgcgtcttg
    17581 gcgagccgga tgcccagggg cgtcggcgtc cagtaccggt ggaaggcagt gaatttgtca
    17641 tgccagccga cgcggtgatt atggcgtttg gcttcaatcc gcacgggatg ccgtggctgg
    17701 agtcgcacgg tgtaacggta gacaaatggg gccgcatcat cgcggatgtg gaaagccagt
    17761 accgttacca gaccaccaat ccgaaaatct tcgccggtgg cgacgccgtg cgtggtgcgg
    17821 atctggtggt taccgcaatg gcagaaggac gtcatgcggc acaggggatt attgactggc
    17881 tgggggtaaa atcagtcaaa tctcactgat agcctgcgca gacaaacccg acttcacagc
    17941 gtaagataat tgttcatttc gcgctgtgga gtcggtatga cgcaacaaat caccctcatt
    18001 aaagacaaaa ttctctccga taactatttc accctgcaca acattaccta cgatctcacg
    18061 cgcaaagatg gcgaagttat ccgccataaa cgtgaagttt acgatcgcgg taatggtgcg
    18121 acgatcctcc tgtacaacgc gaagaaaaag accgtggttc tgattcgtca gttccgtgtc
    18181 gctacctggg ttaatggcaa tgaaagcggg cagctgattg aaacctgcgc cgggctgctg
    18241 gataacgacg aaccggaagt gtgcattcgt aaagaagcga ttgaagagac gggctatgaa
    18301 gtgggcgaag tgcgcaaatt atttgaactg tatatgtcgc caggcggtgt gactgagcta
    18361 atccactttt ttatcgccga atacagtgac aatcagcgcg ctaacgccgg tggcggtgtc
    18421 gaagatgaag atattgaagt gctcgagctg ccgttcagcc aggcgctgga gatgatcaaa
    18481 accggcgaga tacgtgacgg taagacggtg ttattgctta actatttgca aacgtcacat
    18541 ttaatggact gaaaaataac aataatattt cgttgtttat tattggctca atccgacaaa
    18601 tccgattgag ccgcgctacc tgcgcaacga agatacgact tgtgctgttt gtttgaactt
    18661 ctggggtcgt accgtccatg cgctatcgca ttttccttct cttttttttc gctttgttgc
    18721 cgacgtcttt ggtgtgggcg gcaccagcgc aacgggcgtt ttccgactgg caggtcacct
    18781 gtaataacca aaacttctgc gtggcgcgta atacgggcga tcataatgga ctggtgatga
    18841 ccctgagccg cagcgccggg gcgcataccg atgccgtttt acgtattgag cgcggcggat
    18901 tgaagtcgcc ggaggcgtca gaaggggaga tagcgccacg gctgctgtta gatggcgagc
    18961 cgttggcgtt aagtggtgac aagtggcgga tttcaccatg gttattagta accgatgata
    19021 cggcaaccat caccgcgttt ttgcagatga ttcaggaagg gaaggcgatc accttacgcg
    19081 acggcaatca gaccatttcg ctgagtggct taaaagcggc gttgttgttt attgatgctc
    19141 agcaaaagcg cgttggcagt gaaaccgcgt ggatcaagaa aggggacgaa ccgccgctca
    19201 gcgtaccgcc cgcgcctgcg ctgaaagagg tcgcggtggt taacccaacg ccgacgccac
    19261 tctcactcga agaacgcaac gatttgctgg attatggaaa ctggcggatg aatggtctgc
    19321 gctgctcgct tgatccattg cgtcgtgagg tgaatgtcac tgcgctgact gatgataaag
    19381 cgctgatgat gattagctgt gaggcagggg cctataacac cattgatttg gcatggattg
    19441 tgtcgcgtaa aaatccgctg gcctcgcgcc cggttcggtt gcgtttgccg ttcaacaacg
    19501 ggcaggagac gaatgaactg gaactgatga acgcaacatt tgatgagaaa tcgcgtgaac
    19561 tggtgacctt agcgaaaggg cgcggattaa gcgattgtgg cattcaggcg cgctggcgct
    19621 ttgacggtca gcgttttcgc ctggtgcgtt acgccgcaga acccacctgc gataactggc
    19681 atgggccaga cgcctggccc acgttgtgga tcacccgtta aacaaaatgg cggggacatg
    19741 taggccggat aagacgctgt aggccggata agacgcgtca gagtcgcatc cggcaatcag
    19801 cgtccggcaa tcagcatccg gcgatcacca tcaggcacct ttcactccca gcaccttatg
    19861 cgcttttgcc acaatattct cggcggtaaa gccaaagaac gggaacagct tatccgccgg
    19921 agcagattcc ccataacctg tcatcccaac aatcgcccct ttcaaaccaa catacttgta
    19981 ccagtaatcg gcaatacctg cttccaccgc cacgcgagcc gcaacgttag aaggcaacac
    20041 cgactcccga tattcctcat cctgggcgtc gaaaatatca gtcgagggca gggaaactac
    20101 gcgtacattg cgaccttctc ccgctaattt ctctgccgct tgcaggggga tttccatctc
    20161 tgaaccggtg gcaatcaaaa taatatctgg cttaccgccg ctgtctttca gcacataacc
    20221 gccacgggca atctctttta cctgatccgg cgtacgttcc acctgggcca gattctgcct
    20281 tgagaggatc agtgccgtcg gtccgttgtg gcgctcaacc gccagcttcc agcccaccgc
    20341 cgcttccacc tgatcgcacg gtcgccaggt gctgaaattt ggcgttaagc gcaggctggc
    20401 cagttgctca acagcctggt gcgtcggacc atcttcgccc aggccaattg agtcgtgggt
    20461 ataaaccata atctgccgcg ctttcatcag tgccgccatc cgcgcggcgt tacgggcgta
    20521 ttcaacaaac atcaggaacg tggcggtata cggcacaaag ccgccgtggt gcgcgatgcc
    20581 gttggctata gcggtcatgc caaattcacg caccccgtag tgaatgtagt tgcccgccgg
    20641 atcttccttc agcgaaacag aacctttcca gatggtcagg ttgctggagc cagatccgcc
    20701 gaaccgccga gcaactcagg cagcatcggc
//
LOCUS       DADMJB010000059        20720 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.059, whole genome shotgun sequence.
ACCESSION   DADMJB010000059 DADMJB010000000
VERSION     DADMJB010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20720)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20720)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20720
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.059"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(73..4533)
                     /gene="mukB"
                     /locus_tag="JN078_001973"
     CDS             complement(73..4533)
                     /gene="mukB"
                     /locus_tag="JN078_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukB"
                     /protein_id="HAY9041190.1"
                     /translation="MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTM
                     AAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVV
                     GVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPLNELKDKLEAM
                     EGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLR
                     DYLLPENSGVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMR
                     HANERRVHLDKALEFRRELHTSRQQLAAEQYKHVDMARELAEHNGAEGDLEADYQAAS
                     DHLNLVQTALRQQEKIERYEADLDELQIRLEEQNEVVAEAIERQEENEARAEAAELEV
                     DELKSQLADYQQALDVQQTRAIQYNQAIAALNRAKELCHLPDLTADSAAEWLETFQAK
                     ELEATEKMLSLEQKMSMAQTAHSQFEQAYQLVVAINGPLARNEAWDVARELLREGVDQ
                     RHLAEQVQPLRMRLSELEQRLREQQEAERLLADFCKRQGKNFDIDELEALHQELEARI
                     ASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTS
                     SQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQPGGSEDQRLNALAERFG
                     GVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQVTEHLDGLTDCPEDLYLIEGD
                     PQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVPLFGRAARESRIESLHAEREVLS
                     ERFATLSFDVQKTQRLHQAFSRFIGSHLAVVFESDPEAEIRQLNSRRVELERALSNHE
                     NDNQQQRIQFEQAKEGVTALNRILPRLNLLADDSLADRVDEIRERLDEAQEAARFVQQ
                     FGNQLAKLEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQQAFALTEVVQRRAHFSY
                     SDSAEMLSGNSDLNEKLRERLEQAEAERTRAREALRGHAAQLSQYNQVLASLKSSYDT
                     KKELLNDLQRELQDIGVCADSGAEERARIRRDELHAQLSNNRSRRNQLEKALTFCEAE
                     MDNLTRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAYLSADDL
                     RSMSDKALGALRLAVADNEHLRDVLRMSEDPKRPERKIQFFVAAYQHLRERIRQDIIR
                     TDDPVEAIEQMEIELSRLTEELTSREQKLVISSRSVANIIRKTIQREQNRIRMLNQGL
                     QNVSFGQVNSVRLNVNVRETHAMLLDVLSEQHEQHQDLFNSNRLTFSEALAKLYQRLN
                     PQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLRAESGALSTGEAIGTGMSIL
                     VMVVQSWEDESRRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLQMQLIIAAPE
                     NISPEKGTTYKLVRKVFQNTEHVHVVGLRGFAPQLPETLPGTDEAPSQAS"
     gene            complement(4533..5237)
                     /gene="mukE"
                     /locus_tag="JN078_001974"
     CDS             complement(4533..5237)
                     /gene="mukE"
                     /locus_tag="JN078_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415443.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukE"
                     /protein_id="HAY9041191.1"
                     /translation="MSSTNIEQVMPVKLAQALANPLFPALDSALRSGRHIGLDELDNH
                     AFLMDFQEYLEEFYARYNVELIRAPEGFFYLRPRSTTLIPRSVLSELDMMVGKILCYL
                     YLSPERLANEGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLN
                     RLRRLGMVWFMGHDSSKFRITESVFRFGADVRAGDDPREAQRRLIRDGEAMPIENHLQ
                     LNDETEENQPDSGEEE"
     gene            complement(5218..6540)
                     /gene="mukF"
                     /locus_tag="JN078_001975"
     CDS             complement(5218..6540)
                     /gene="mukF"
                     /locus_tag="JN078_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukF"
                     /protein_id="HAY9041192.1"
                     /translation="MSEFSQTVPELVAWARKNDFSISLQVDRLSFLLAVATLNGERLD
                     GEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYR
                     LTPLGIGITDYYIRQREFSTLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPL
                     KYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL
                     QDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIG
                     YDRHVHKFIRTAIDMDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALR
                     DEEVTGELPEDLEYEEFNEIREQLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRA
                     RHFDVARIVIDQAVRLGVAQADFTGLPAKWQPINDYGAKVQAHVIDKY"
     gene            complement(6537..7322)
                     /gene="cmoM"
                     /locus_tag="JN078_001976"
     CDS             complement(6537..7322)
                     /gene="cmoM"
                     /locus_tag="JN078_001976"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine 5-oxyacetic acid(34)
                     methyltransferase CmoM"
                     /protein_id="HAY9041193.1"
                     /translation="MQDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQ
                     KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAA
                     QDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNM
                     VAGNFDYVQAGMPKKKKRTLSPDYPRDPAQVYLWLEEAGWQIMGKTGVRVFHDYLREK
                     HQQRDCYEALLELETRYCRQEPYITLGRYIHVTARKPQSKDKV"
     gene            7458..8237
                     /gene="elyC"
                     /locus_tag="JN078_001977"
     CDS             7458..8237
                     /gene="elyC"
                     /locus_tag="JN078_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706838.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope biogenesis factor ElyC"
                     /protein_id="HAY9041194.1"
                     /translation="MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTAKIFIS
                     IGWLALLLLSLQPVADRLLRPIESTYPTWNNSQKVDYIVVLGGGYTWNPQWAPSSNLI
                     NNSLPRLNEGIRLWRENPGSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLD
                     LPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPL
                     NPWERAIPSPVWLMHSDRVGYETLGRIWQWLKGPSGEPRQE"
     gene            complement(8214..9107)
                     /locus_tag="JN078_001978"
     CDS             complement(8214..9107)
                     /locus_tag="JN078_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbJ family phosphotransferase"
                     /protein_id="HAY9041195.1"
                     /translation="MEQLRAELSHLLGEKLSRIECVNEKADTALWALYDSQGNPMPLM
                     ARSFSTPGKARQLAWKTTMLARSGTVRMPTIYGVMTHEEHPGPDVLLLERMRGVSVEA
                     PARTPERWEQLKDQIVEALLAWHRQDSRGCVGAVDNTQENFWPSWYRQHVEVLWTTLN
                     QFNNTGLTMQDKRILFRTRECLPALFEGFNDNCVLIYGNFCLRSMLKDSRSDQLLAMV
                     GPGLMLWAPREYELFRLMDNSLAEDLLWSYLQRAPVAESFIWRRWLYVLWDEVAQLVN
                     TGRFSRRNFDLASKSLLPWLA"
     gene            complement(9261..10007)
                     /gene="kdsB"
                     /locus_tag="JN078_001979"
     CDS             complement(9261..10007)
                     /gene="kdsB"
                     /locus_tag="JN078_001979"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HAY9041196.1"
                     /translation="MSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAER
                     IIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEP
                     MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATI
                     PWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQASPLEHIEMLEQLRVLWYG
                     EKIHVAVAQEVPGTGVDTPEDLERVRAEMR"
     gene            complement(10004..10186)
                     /locus_tag="JN078_001980"
     CDS             complement(10004..10186)
                     /locus_tag="JN078_001980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YcaR"
                     /protein_id="HAY9041197.1"
                     /translation="MDHRLLEIIACPVCNGKLWYNQEKQELICKLDNLAFPLRDGIPV
                     LLETEARVLTADESKS"
     gene            complement(10238..11470)
                     /locus_tag="JN078_001981"
     CDS             complement(10238..11470)
                     /locus_tag="JN078_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HAY9041198.1"
                     /translation="MSLPHLSLADARNLHLAAQGLLNKPRRRASLEDIPATISRMSLL
                     QIDTINIVARSPYLVLFSRLGNYPAQWLDESLARGELMEYWAHEACFMPRSDFRLIRH
                     RMLAPEKMGWKYKDAWMQEHEAEIAQLIQHIHDKGPVRSADFEHPRKGASGWWEWKPH
                     KRHLEGLFTAGKVMVIERRNFQRVYDLTHRVMPDWDDERDLVSQTEAEIIMLDNSARS
                     LGIFREQWLADYYRLKRPALAAWREARAEQQQIIAVHVEKLGNLWLHADLLPLLERAL
                     AGKLTATHSAVLSPFDPVVWDRKRAEQLFDFSYRLECYTPAPKRQYGYFVLPLLHRGQ
                     LVGRMDAKMHRQTGILEVISLWLQEGIKPTTMLQKGLRQAITDFASWQQATRVTLGRC
                     PQGLFTDCRTGWEIDPVA"
     gene            complement(11507..12493)
                     /gene="lpxK"
                     /locus_tag="JN078_001982"
     CDS             complement(11507..12493)
                     /gene="lpxK"
                     /locus_tag="JN078_001982"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HAY9041199.1"
                     /translation="MIEKIWSGESPLWRLLLPLSWLYGLVSGAIRLCYKLKLKRAWRA
                     PVPVVVVGNLTAGGNGKTPVVVWLVEQLQQRGIRVGVVSRGYGSKAESYPLLLSADTT
                     TAQAGDEPVLIYQRTDAPVAVSPVRSDAVKAILAQHPDVQIIVTDDGLQHYRLARDVE
                     IVVIDGVRRFGNGWWLPAGPMRERAGRLKSVDAVIVNGGVPRSGEIPMHLLPGQAVNL
                     RTGTRCDVAQLEHVVAMAGIGHPPRFFATLKMCGVQPEKCVPLADHQSLNHADVSALV
                     SAEQTLVMTEKDAVKCRAFAEENWWYLPVDAQLSGDEPAKLLTQLTSLASGN"
     gene            complement(12490..14238)
                     /gene="msbA"
                     /locus_tag="JN078_001983"
     CDS             complement(12490..14238)
                     /gene="msbA"
                     /locus_tag="JN078_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A ABC transporter ATP-binding
                     protein/permease MsbA"
                     /protein_id="HAY9041200.1"
                     /translation="MHNDKDLSTWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFM
                     LSLLKPLLDDGFGKTDRSVLVWMPLVVIGLMILRGITSYVSSYCISWVSGKVVMTMRR
                     RLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMM
                     FYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVL
                     IFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM
                     DSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRV
                     IERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF
                     YDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQI
                     EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT
                     SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLL
                     EHRGVYAQLHKMQFGQ"
     gene            complement(14379..16547)
                     /locus_tag="JN078_001984"
     CDS             complement(14379..16547)
                     /locus_tag="JN078_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011379253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC family protein"
                     /protein_id="HAY9041201.1"
                     /translation="MKITTVGVCIICGIFPLLILPQLPGTLTLAFLTLFACVLAFIPV
                     KTVRYIALTLLFFVWGILSAKQILWAGETLTGATQDAIVEITATDGMTTHYGQITHLQ
                     GRRIFPAPGLVLYGEYLPQAVCAGQQWSMKLKVRAVHGQLNDGGFDSQRYAIAQHQPL
                     IGRFLQASVIEPNCSLRAQYLASLQTTLQPYMWNAVILGLGMGERLSVPKEIKNIMRD
                     TGTAHLMAISGLHIAFAALLAAGLIRGGQVFLPGRWIHWQMPLIGGICCAAFYAWLTG
                     MQPPALRTVVALATWGMLKLSGRQWSGWDVWICCLAAILLMDPVAILSQSLWLSAAAV
                     AALIFWYQWFPCPEWQLPPVLRAVVSLIHLQLGITLLLMPVQIVIFHGISLTSFIANL
                     LAIPLVTFITVPLILAAMVVHLSGPLILEQGLWFLADRSLALLFWGLKSLQEGWINIA
                     ERWQWLSFSPWFLLVVWRLNAWRTLPAMCVAVGLLMCWPLWQKPRPDEWQVYMLDVGQ
                     GLAMVIARNGKAILYDTGLAWPEGDSGQQLIIPWLHWHNLEPEGVILSHEHLDHRGGL
                     DSILHTWPMLWIRSPLNWEHHQPCVRGEAWQWQGLRFSVHWPLQASNDKGNNHSCVVK
                     VYDGTNSILLTGDIEVPAEQKMLSRYWQQVQTTLLQVPHHGSNTSSSLPLIQRVNGKV
                     ALASASRYNAITHGDCPLIKLSIAINSKDINGLILHIRVK"
     gene            complement(16754..17038)
                     /gene="ihfB"
                     /locus_tag="JN078_001985"
     CDS             complement(16754..17038)
                     /gene="ihfB"
                     /locus_tag="JN078_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HAY9041202.1"
                     /translation="MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIE
                     IRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG"
     gene            complement(17198..18871)
                     /gene="rpsA"
                     /locus_tag="JN078_001986"
     CDS             complement(17198..18871)
                     /gene="rpsA"
                     /locus_tag="JN078_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HAY9041203.1"
                     /translation="MTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKS
                     ESAIPAEQFKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAY
                     EDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLD
                     QKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLL
                     HITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPE
                     GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLD
                     IDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH
                     LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKK
                     GAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGV
                     DRKNRAISLSVRAKDEADEKDAIATVNKQEDANFSNNAMAEAFKAAKGE"
     gene            complement(18982..19665)
                     /gene="cmk"
                     /locus_tag="JN078_001987"
     CDS             complement(18982..19665)
                     /gene="cmk"
                     /locus_tag="JN078_001987"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HAY9041204.1"
                     /translation="MTAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA
                     LAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQ
                     VATFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRML
                     QLQEKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQ
                     YARQKLALA"
     gene            complement(19838..20601)
                     /locus_tag="JN078_001988"
                     /pseudo
     CDS             complement(19838..20601)
                     /locus_tag="JN078_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706828.2"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
BASE COUNT         4988 a         5723 c         5033 g         4976 t
ORIGIN      
        1 tatgtgccat ttttttagtg cagaaacgga gttttcggaa aaagaaaagg cggcattgct
       61 gccgccttaa ttttaactcg cctgagaagg cgcttcgtca gttcctggaa gcgtttcagg
      121 gagttgcggc gcaaatcctc gcaggccgac gacatgaaca tgttcggtat tctggaagac
      181 tttacgcacc agtttatagg tggtgccttt ctccgggctg atattttccg gcgctgcgat
      241 gatgagctgc atttgcaaac gctcacacaa ttcaaacagc gtggcgatag aacgagcatc
      301 cagtcgcgct gcttcatcga ggaacagcag acggcaagga gagatatctt taccgcgcag
      361 gcggcgagat tcatcttccc agctttgtac caccatcacc agaatcgaca taccggtacc
      421 aatcgcctca ccggtcgaca atgcaccaga ctctgcgcgc aaccaaccat cggaaccacg
      481 gttaacctca acttccattt ccagatagtt gcggtaatcc agcagttctt cgccaatggt
      541 ctgcggcgtg cgctgcccca tatcaatctg cggattaaga cgctgataca atttcgccaa
      601 cgcttccgag aaggtcagac ggttgctgtt aaacagatcc tgatgctgct cgtgctgttc
      661 agagagcaca tccagcagca tggcgtgcgt ttcacgcacg ttcacgttga ggcgcacgct
      721 gttcacctga ccaaacgata cgttctgcaa cccctggttg agcatacgga tacggttctg
      781 ctcgcgctga atggttttgc gaatgatgtt cgccacgctg cgggaactga tcaccagttt
      841 ctgttcacgg gaggttaatt cttcggtcag acggctaagt tcgatctcca tctgttcgat
      901 agcttccacc ggatcatcgg tacgaataat atcctgacga atacgttcac gcagatgctg
      961 ataagccgcc acgaagaact gaattttacg ctccggacgt ttcggatctt ccgacatgcg
     1021 cagcacgtcg cgcagatgtt cgttatccgc caccgccaga cgcagcgcac ccaatgcctt
     1081 atccgacata gagcgcaaat catcagcgga gagataagcc agctcacgac ggtgtaagcg
     1141 gcgctcaacg ccgttatctt tcaccatgcg catcaccgca caccagcccg ctttggcggt
     1201 cactacctgc tcgcgcatct caaagtaatc ccgctccagc ttgcgcagtt tgcgggtcag
     1261 gttgtccatc tccgcttcgc agaaggtaag cgctttttcc agttgattgc ggcgtgaacg
     1321 gttattgctc agttgcgcat gcagctcgtc acggcgaata cgcgcccgct cttctgcccc
     1381 gctatcagca cacacgccga tatcctgcaa ttcacgttgc agatcgttga gtagctcttt
     1441 tttggtgtcg taagaacttt tcagcgaagc cagcacctgg ttgtactgac tcaactgcgc
     1501 tgcgtgaccg cgcaacgctt cgcgagcgcg ggtacgctcc gcttccgcct gttccagacg
     1561 ttcacgcagt ttttcgttga gatcgctgtt accgctaagc atttctgccg agtcagagta
     1621 gctaaagtgc gcacgacgct gcaccacttc cgtcagggca aacgcctgct gacgggcatc
     1681 gcgctgcatc tgttgagagt acgcgtaatc ttcttttaac tgttcgaact gttccgggtc
     1741 gctctgcaat accgaaacga tcggttccag tttcgccagt tgattgccaa actgctgaac
     1801 aaaacgcgcg gcttcctggg cttcatccag acgttcgcgg atttcatcga cgcgatccgc
     1861 caggctatca tcagccaaca ggttgagacg cggcagaatg cggttcagcg ccgtaacgcc
     1921 ctctttcgcc tgctcaaact gaatacgctg ctgctggtta tcattttcat gattacttaa
     1981 cgcccgctcc agttcgacgc gacggctgtt cagttgacgg atttctgctt ccgggtcaga
     2041 ctcaaacaca accgccagat gactgccgat aaagcggctg aacgcctgat gcagacgctg
     2101 agttttctgt acatcaaagg agagcgtggc gaagcgttcg gaaagcactt cacgctcggc
     2161 atggaggctt tcaatacggc tttcacgcgc agcacgacca aacagcggca cttccgggaa
     2221 acgtgaataa cgccactgac gatcggcgat tttcaccact accgcttttt ccagctcatc
     2281 aacgctgaac acgctgtcat cgaatgactg cggatctcct tcgatcagat agagatcttc
     2341 cgggcaatcg gtcaagccat ctaggtgttc agttacctgt gacagatctg gcaccacgat
     2401 ggcgtggcgt gacgggccat acagcgctga gaagtacggc gcatcttcca ggctaacgtc
     2461 gtcataaatt tctgacagca gcacaccacc aaaacgctcc gccagcgcgt tcagacgctg
     2521 atcttcagag ccgccaggct ggcttaaacg ttcgatctct tcatcgacgg cgtttttgcg
     2581 cgcgcccact tcatcgcgtt caacaatcgc ctctcgctca cgctccagca actgttgcag
     2641 atattcggtg acgtcctggc tggaggtaaa ctcttcgccg cactgttcgc tcaactggtt
     2701 gagactgttt tgcgctgcca gccaaaccgg cgcacgctgc atcaaactct gaatgcgaga
     2761 ctgcagctgt tcctgctcct ggcgcagtgc catgcgctct tcacgggcgt tagacacgct
     2821 atcggaaaga gaggcaatgc gtgcttccag ttcctgatgc agggcttcca gttcgtcgat
     2881 atcaaaattc ttgccctgac gtttgcagaa atctgccagc agacgctcag cttcttgctg
     2941 ctcgcgtaga cgctgttcca gttcgcttaa tcgcatccgc agcggctgaa cctgctctgc
     3001 caggtgacgc tgatcgaccc cttcgcgcaa tagttcgcga gcgacatccc acgcctcgtt
     3061 acgcgccagt gggccgttga ttgccaccac cagctgataa gcctgctcaa actggctgtg
     3121 cgcggtttgc gccatgctca ttttctgctc aagagagagc attttttcag tcgcttccag
     3181 ctctttcgcc tggaaggttt ccagccattc ggcggcgctg tcggcggtta agtccggcag
     3241 atggcacagt tctttggcac gattaagcgc agcaatcgcc tggttatact ggatcgcgcg
     3301 cgtttgctgg acgtccagcg cctgctggta gtcagcaagc tggcttttca gctcgtccac
     3361 ttccagttcg gcagcttccg cgcgagcctc gttctcttcc tggcgttcga tggcttctgc
     3421 caccacttcg ttttgctctt ccagacggat ctgcagctca tcgagatccg cttcgtagcg
     3481 ttcgatcttc tcctgctgac gcagtgcggt ttgcaccagg ttcaggtgat cgctggccgc
     3541 ctgataatcc gcttccagat cgccttcggc accgttgtgc tctgccagct cacgcgccat
     3601 atcgacgtgt ttgtactgct cagccgccag ttgctgacgc gaagtatgta actcgcgacg
     3661 aaactccagg gctttgtcga gatggacacg gcgctcgttg gcgtgacgca tgtagtccgc
     3721 cgccacgtag ttggtagctt cgctgatcag atgcttaaac aggtcacggt ccgactgggt
     3781 gacacgaatc gcttccagcg tcatgcggtt ttcacgcagc gccgcttcca tgtcctggaa
     3841 cgctttacgc acgccgctgt tttccggcaa cagatagtcg cgcagagaac gggtaatggc
     3901 actggagatc ccgccataca gcgaagcttc gatcagacga tagaatttgc tacggtcaga
     3961 tgcggagcgc agacgacgcg cgatgatgcc cagatcgaac atcagcgagt ggtaatcggt
     4021 aatggagttg aactgtttaa actgcacgcc ttccatcgcc tcgagcttgt ctttcagctc
     4081 gttaagcggc agcacgcgcg cctggcgttc gttcagggtt tcggtcacca gctgtgtcgg
     4141 ctgcaccgac atcggcagtc cctgaatggc aaatggtttg atatccactt tacgatcgcg
     4201 tccggcaacc tgttgcagac gcacaccgac caccacgcgc tggtggcgcg agttaatggt
     4261 gtcgagcatc gaataacaga cacccgcttt cagcttaccg tgcagacctt tatcgcgcga
     4321 accgctggtg gccccggctt ccgtagtgtt acggaaatgc agcagggtca ggtcggggat
     4381 cagcgccgta acgaacgccg ccatggtggt ggatttaccc gccccgttac cgccagaaag
     4441 cgtcgtgacc agctcgtcaa ggtcaaaagt tcgggcaaaa aagccgttcc agttaatcag
     4501 cgtcagtgag cgaaatttac cgcgttcaat cattattctt cctctccgct atctggctga
     4561 ttctcttcgg tttcatcgtt gagttgcaga tgattttcaa tcggcattgc ttcgccatca
     4621 cgaatcaggc gacgctgtgc ttcacgggga tcgtcgccag cacgcacatc ggctccgaag
     4681 cggaacaccg attcggtaat gcgaaacttg ctgctgtcgt ggcccataaa ccacaccatg
     4741 cctaaacgac gcagacggtt gagcgaagaa cgtactttct cctgcaactt ctgacggtca
     4801 acgtctgaac cggttgaacg gttgttcacc agtttcagca gttttgcttc atcggccagg
     4861 gtgagcagtt cgtcgtacag ttcctgctgg gtgaaaatcc cctcattcgc cagccgttcc
     4921 gggctgagat agagataaca gaggattttc ccgaccatca tatccagttc cgacaagacg
     4981 gaacgcggga taagagtggt ggaacgtggg cgtaaataga agaacccttc cggtgcgcga
     5041 ataagctcaa cgttataacg cgcgtaaaac tcttccagat attcctgaaa atccatcagg
     5101 aatgcatgat tatccagttc gtcgaggcca atatggcggc ctgaacgtaa ggcgctgtcc
     5161 agcgccggaa ataacggatt cgccagcgcc tgcgccagct taaccggcat cacttgttca
     5221 atatttgtcg atgacatgcg cctgtacctt ggctccgtaa tcattaatcg gctgccattt
     5281 cgctggcagt ccggtgaaat ctgcttgcgc tacgccaaga cgtaccgcct gatcaataac
     5341 aatacgcgca acgtcaaagt gacgtgcacg cggatactgt gacagatatt cgcgtaccac
     5401 cagaccaaga tccagcggca cttgtctggt tttgtacacg gcaagttgtt cttcgatgat
     5461 cgccgccagc tgttcgcgga tctcgttaaa ctcttcgtat tccagatcct caggaagttc
     5521 cccagtcact tcttcatcgc gcagtgccat ctcttcgtca cgcatatcca gcagacgatc
     5581 ggcattggca taagttagcg cccacggctc atcaaaatag gtttgtaccg actgacgtaa
     5641 ccgctgagca aagacgcggt ttttatccat atcgatcgcg gtacgaataa atttgtgtac
     5701 gtggcggtcg tagccaatcc acaagtcgat ggattgctgg ccccaactga taatacgatc
     5761 gagtttgctc tgcagatcga acaccagacg atcgacgaaa tgcagatcgt catgggtcat
     5821 cgtcgcatcc tgaatgcgca acagattagc ctgcaatttg tcgcctgccg cttccagcgt
     5881 atcctgcaat tcacgcagcg ttccggaagt ttccgaaagc aacaattcac agctggaaat
     5941 cgccgcccgc cagtctttgt tcagcaactg ggcgatatcg tccttcacct gctgctgctg
     6001 ttcgtccatc agacgttgcg tcaggtcgat actgtcgaaa atttctgcta ccgaatattt
     6061 cagtggcgca tagacattac ggtgccagtg aaattcatca ccgccctctt cggcggcatc
     6121 tgctgcgcgt ttgagctcac ccgccacaat cgacaactgc atagaaagac gcagcgtaga
     6181 aaactcgcgc tgacggatgt agtagtcagt aatgccgatg ccgagcggcg tcagacggta
     6241 aattgcgttc ccttccgcct gctcgctggt aaagcggttc agcagacgtt gacgcaccat
     6301 gtcgttgatc gcgttattgg cgcgcacgcc gatggtttcg ctggtttgct caaacgcatc
     6361 actcacatgg cggaatgcat ccaccagctc gccttcactc atctcaccat ccagacgctc
     6421 gccgttcagc gtggcaaccg ccagcagaaa agagagtcgg tctacctgca gcgagatgga
     6481 gaagtcattt tttctggccc aggcaaccag ttcggggact gtctgggaaa attcactcat
     6541 actttatcct tgctctgcgg tttgcgcgcg gtgacatgaa tataacgccc cagggtaata
     6601 tacggttcct gacggcaata acgcgtttct aattcaagta atgcttcata gcagtcgcgc
     6661 tgctggtgct tctcgcgcag ataatcatga aacacgcgaa cgcctgtctt acccataatt
     6721 tgccaaccag cttcttccag ccacagataa acctgcgccg ggtcgcgtgg ataatctggc
     6781 gaaagcgtcc gttttttctt tttcggcatt cccgcctgca cgtaatcaaa attcccggcg
     6841 accatgttat gcatcaacaa accatgcgca ttgtagaaca ttaacgacaa cacgccgcct
     6901 ggacgcaaca ctgaccacag ggtctgcaat acactgcggg gatcggccac ccactcgagc
     6961 accgcatgga acaatatcag atcaacgggc gtttccaaat gcgaagcaac atcctgagcg
     7021 gcgcaatgta taaattgcat gttgtcgctc acaccttttg cttctgccgc ctgttttgcg
     7081 cggtcgatca tctgcgcaga aagatcgcat aaaatgacct gatgcccacg ctcggccatt
     7141 ttgattgcgg tctgcccttc tccaccgcca gcatccagca cacgcagttt ttgcgggccc
     7201 atttccgcca gcacgcgatc gagatcctgc cacagaatag cctgtcgaag ctgccctttg
     7261 gtggtgccgt aaatgttacg ggaaaacttt tccgcaatat catcaaaatt gcgatcctgc
     7321 attgctttct ccaccggttg gctaagacgt tttctgataa agacgctatt ttgtcacagc
     7381 cacggcgaga atgaacccgt ctggtgtaat atcgctggcg atcccttgct atatggttaa
     7441 aaaaggaacc agaaaggatg ctttttacac tgaaaaaagt gattggcaat atgttgctgc
     7501 cacttccgct gatgttgtta attattggcg ctggcctggc gctgctgtgg tttagccgtt
     7561 ttcaaaaaac cgcgaagatt tttattagca ttgggtggct ggcactcttg ttattgagtt
     7621 tgcaaccggt agccgaccgc ctgctgcgtc ccatcgaaag cacctatccg acatggaata
     7681 attcgcaaaa agtggactat atcgtggtgc tcggaggtgg ttatacctgg aacccgcagt
     7741 gggcaccgag ctctaattta atcaataaca gtctgccacg cctgaatgaa ggtattcgct
     7801 tatggcgcga aaatccggga tcaaaactga tcttcacggg aggcgtagca aaaaccaata
     7861 cggtgagtac agcggaagta ggtgccagag ttgcgcaatc gctgggcgtg ccgcgcgagc
     7921 aaattatcac cctggatttg ccaaaagata ccgaagaaga agctgcggca gtgaaacagg
     7981 cgattggtga cgcccctttc ctgctggtga cctccgcatc acatctgccg cgggcgatga
     8041 tcttttttca gcaggaaggg ttaaatcctc taccagcccc ggcgaatcag ttggccatcg
     8101 actcgccgct taatccgtgg gaacgggcaa tcccttctcc ggtctggctg atgcatagcg
     8161 atcgtgttgg ctatgaaacg cttggccgca tctggcagtg gctgaaaggt ccgtcaggcg
     8221 agccacggca agagtgattt tgatgccaga tcgaagttgc gccgactaaa tcgtccggta
     8281 ttaaccagtt gcgcaacttc atcccataac acatacaacc aacgccgcca gatgaacgac
     8341 tccgccactg gcgcgcgttg caggtaactc cagagcaaat cttccgccag agaattatcc
     8401 attagtcgga acagttcgta ttctcgcggt gcccaaagca ttagtcccgg cccgaccatc
     8461 gccagtaact gatcgctgcg cgaatctttc agcatgctgc gtaaacagaa gttaccgtaa
     8521 atcaacacac aattgtcgtt aaagccttca aataatgccg ggagacattc gcgagtgcga
     8581 aacaggatcc gcttatcctg catcgtcaga ccggtgttat tgaactgatt gagcgtggtc
     8641 catagcactt caacatgttg ccggtaccat gagggccaga aattttcctg agtattgtcg
     8701 accgcgccga cgcaaccgcg actgtcctga cggtgccatg ccagtaaggc ttcaacgatt
     8761 tggtctttga gctgttccca gcgttctggt gttcgggctg gtgcctccac cgaaacacca
     8821 cgcatccgct ccagtagcag gacatcaggg ccggggtgtt cttcatgcgt catcacacca
     8881 taaatagtcg gcatacggac agtcccactt cttgccagca tggtggtttt ccatgccagt
     8941 tgtcgggctt ttccgggcgt actaaagctt cttgccatta acggcattgg gtttccctgg
     9001 ctgtcataca aagcccacaa cgccgtatcc gctttttcat tgacgcactc aatacgactg
     9061 agtttttcgc ccagtaaatg gcttaattcg gcacgcagct gttccattca gattaccctc
     9121 ataaaagcta ctgctttcat aatgagcgcc aatataaaag atgtcacctg aatgagatca
     9181 attgttgaaa agaaaaattg aggaaaatcg taacggtacg acactcctcc caaaattggc
     9241 tgaagtgtcg tgaagtgaaa ttagcgcatt tcagcgcgaa cgcgctcaag atcttcaggg
     9301 gtatccacac ctgtgccagg aacttcctga gcaacagcaa catggatttt ttcgccgtac
     9361 cacagaacac gaagctgctc taacatttcg atgtgttcta acggacttgc ctgccagttg
     9421 acgtaacgac ggataaagcc tgcacggtag ccataaatgc caagatgacg caggaagtta
     9481 tcgccaacgg tttcaaggcc ttctgcaaaa cgatcacgat cccaaggaat ggtggcgcgt
     9541 gagaagtaca gtgcataccc ttcagcgtcg agaaccactt tcaccgcatt cgggttaaac
     9601 gcttcttccg cattgtggat tggcaccgcc agagtcgcca tacccacctg acgctgagcg
     9661 aggttatcag caacctgacg aatgattgtc gcagggatca tcggttcatc accctgcaca
     9721 ttaacgatca ccgtgtcgtc gctgaatgcg catttttcga caacttccgc cagacgttct
     9781 gttcctgact gatgatcggc gcgcgtcata catacttcac cgccagcggc ttcaacggcg
     9841 cgggcaacat cctcatgatc ggttgccacg atgatgcgct cggcacctga ttcacgcgcg
     9901 cgttcaagaa catgaacaat catgggtttg ccgttaatat caaccaatgg tttaccgggc
     9961 agacgcgtgg acgcgtagcg cgcgggaata atgaccacaa aactcatgat ttactctcat
    10021 cagcagtcag cacgcgggct tccgtttcca gcaacactgg aatgccatcg cggagcggga
    10081 aagccaggtt atccagtttg caaataagct cttgtttttc ctggttatac caaagttttc
    10141 cgttgcaaac cgggcaggca atgatttcaa gcaaacgatg atccatagtt cctccagatg
    10201 gatcgggtta tgaatgcata aatcttatca taatcattta tgcgacgggg tctatttccc
    10261 agccagtgcg gcaatcagta aagagacctt gcgggcagcg tcctaatgtc acccgcgttg
    10321 cctgctgcca gctcgcgaaa tcagtaatcg cctgacgtaa ccctttttgc agcattgtcg
    10381 ttggtttaat gccttcctgt aaccacagag agataacttc aaggatgcct gtctggcgat
    10441 gcattttggc atccattcgc ccaactaatt gcccacgatg taataatggc agaacaaaat
    10501 agccatactg gcgtttcggc gctggggtat agcactccag ccggtagcta aaatcaaaaa
    10561 gctgctctgc gcgtttgcga tcccagacaa caggatcaaa aggcgaaagt accgcgctgt
    10621 gcgttgcagt gagctttccg gccagcgcac gctcgagtag cggcagcaaa tcagcatgca
    10681 gccaaagatt gcccaatttt tcaacatgca cagcaatgat ttgctgctgt tcagccctcg
    10741 cttcgcgcca cgccgccagt gccggacgtt tcagccgata gtaatctgcc agccactgtt
    10801 cgcggaatat tcccaggcta cgcgcactgt tatccagcat gatgatttct gcttctgttt
    10861 gcgaaacgag atcgcgctca tcatcccagt caggcatgac acggtgggtt aaatcataaa
    10921 cgcgctggaa gttgcgccgt tcaatcacca tcacctttcc ggcagtaaat aaaccttcca
    10981 gatgccgttt atgcggtttc cattcccacc agccgcttgc acctttacga ggatgctcaa
    11041 aatcggctga acgtaccggc cccttatcat gaatatgctg aattaactgt gcaatttccg
    11101 cctcatgttc ctgcatccag gcgtctttgt atttccagcc cattttttca ggtgccagca
    11161 tgcggtggcg aataagacga aagtcgctac gcggcataaa gcaggcttca tgcgcccagt
    11221 attccattaa ttcgccacgc gccagagact catccagcca ctgggcagga taatttccca
    11281 gacgactgaa aagcaccaga tatggactac gggcaacaat attgatggta tcgatttgca
    11341 gcaaggacat gcgggagatc gttgccggaa tatcctccaa cgacgctcga cggcggggtt
    11401 tgtttaacag gccttgtgcg gcaaggtgaa gattacgcgc atcagcaagg gagaggtgcg
    11461 gcagcgacat tcatgactcc atcaatcgaa cgctgccgcg gcgtaactag ttgccagaag
    11521 ccagcgaggt tagttgcgta agcagtttcg ctggttcatc acctgaaagc tgtgcgtcta
    11581 caggcaaata ccaccaattt tcttctgcaa aggcccggca tttcaccgca tctttttcag
    11641 tcattaccag cgtttgctcg gcgcttacca acgcactgac atccgcatgg ttcaaagact
    11701 gatgatcggc cagcggtaca catttttccg gttgtacgcc acacatcttc agcgtggcaa
    11761 aaaagcgcgg cggatgccca atccccgcca tcgccactac atgttcaagc tgagcaacgt
    11821 cacaacgcgt accggtacgt aaattcaccg cctgacccgg cagcagatgc atgggaattt
    11881 caccgctgcg agggacaccg ccgttgacga ttaccgcatc aaccgacttt aagcgccccg
    11941 ctcgctcacg cattggcccc gccggcaacc accagccatt gccaaagcga cgcacaccat
    12001 caataacgac aatttccaca tcacgcgcca gacggtaatg ctgtaaaccg tcgtcggtta
    12061 cgatgatctg cacatcaggg tgttgcgcca gaatggcttt taccgcatca gaacgaacgg
    12121 gagaaaccgc aacaggcgca tcagtgcgtt gataaatcaa cacaggttca tcacccgcct
    12181 gtgctgttgt ggtatctgcc gacaataaca gcggataaga ttcagcctta ctaccatatc
    12241 cccgcgatac gacccccacg cgaataccgc gctgttgcaa ctgttccacc agccagacaa
    12301 cgaccggggt ttttccgttg ccgcctgcgg tgagattacc aaccacgaca accggtacgg
    12361 gggcacgcca ggcgcgcttc agttttagtt tatagcaaag acggatcgcg ccactcacca
    12421 ggccatacaa ccaggagagt ggcagcaata gccgccacaa aggggattca ccagaccaga
    12481 ttttttcgat cattggccaa actgcatttt gtgaagttgc gcgtaaacgc cgcggtgctc
    12541 aagcaaatcg ttatgcgtac cgcgttccac aatgacacca tcctcgacga ccacgatttc
    12601 gtctgccttt tcaatggtag acaagcggtg ggcaatcacc agagaggtac ggtttttctg
    12661 caactcatcc agtgccgcct gaatcgcacg ttcggattcg gtatccagag ccgaggtagc
    12721 ttcatccaga atcagaatcg ggctatcacg cagcaaggct cgagcgatag caatacgctg
    12781 acgctgaccg ccagagagca gcacgccgtt ttcaccaatc actgtatcga gaccgttatc
    12841 catcttattg atgaagtcca tggcgtaggc catacgcgcc gcttcttcaa tttgctcacg
    12901 gctgtactgt tcagtccgtg cgtaagcaat gttgttagca accgtatcgt taaacagatg
    12961 gacattctgc gacaccagag caacctggtt acgtaacgac gccagggtat actcgcgcag
    13021 atcgtgacca tccatcagga tttcgccttc atcaatatcg taaaaacgag tgatcaggct
    13081 ggcgatggtt gatttacctg aaccagagcg tccaaccaga gcaaccgtct tccctgccgg
    13141 aattttcagg ttgatgttac gcaatgcagg tacgtcacgt cccggataag taaaggtgac
    13201 attgcggaat tccacgtcgc cagtcgcacg ctcgatcacg cgcttacctt cgtctttctc
    13261 ctgctcactg tccagaatgg taaacagcgt ctgacaagcc gccataccgc gctggaactg
    13321 ggcgttaacg ttggtcagtg atttcagcgg acgcatcagt gcaatcattg aagagaaaac
    13381 aacggtaatc gtaccagcag tcaggctatc catgacactt gggaagctcg ccgcatacag
    13441 aacaaacgcc agcgccaaag aggcgatcag ctgaatgatc ggatcagaga tggaagaggc
    13501 tgaaaccatt ttcatcccct gaagacgcat tcggttgctg actttatcaa agcgtttcgt
    13561 ttccacttcc tgaccaccga aaatcaatac ttctttgtgg cccttcagca tttgttcggc
    13621 gctggtggtc acctgcccca tggtgttctg catgttttta ctgatgttgc gaaaacgctt
    13681 cgatactacg cgaatcgcaa tcgaaacaat cggtgccagc acaatcaaaa tgatcgacag
    13741 ttgccaactg taatagaaca tcatgatgaa caggccgatg attgacgcac cttcacgcac
    13801 aaccgttatc agtgcgccgg aagaagaaga agcaacctgt tcggaatcgt aggtaatacg
    13861 tgacaacagc gtccccgttg actgtttgtc aaaaaatgaa accggcattc ccatcatgtg
    13921 accaaacagg cggcgacgca tggtcattac cacctttcct gatacccagg agatacagta
    13981 gctggagaca tagctggtga taccacgtaa aatcatcagc ccgatcacca ccagcggcat
    14041 ccacaccagc acggagcgat ctgttttacc aaagccatca tcaagaagtg gcttaaggag
    14101 cgataacatg aaggtatcgc tggctgcgtt gaggattaac gctacgcccg ccacgatcag
    14161 acccgcttta aaaggcgcaa tggttggcca cagtcggcgg aacgtctgcc acgtagagag
    14221 atctttgtcg ttatgcattc aaaaaaccag catttgttga aatagccgca tattctaccc
    14281 gttatccact ggcacgccaa accactgatg ataccaacga ggtaaaattt gctctctgag
    14341 gctgctaatc cgccagcctt gcgctgaaaa attgaccgtc acttgaccct gatgtggagt
    14401 atcaagccat tgatatcctt gctgttgata gcgatgctta actttattag agggcaatcg
    14461 ccatgcgtta tagcgttata gcgcgatgcc gatgcgagtg ccacttttcc attcactcgc
    14521 tgaattaatg gcaacgatga tgaggtatta ctgccatggt gaggtacctg aagcaatgtt
    14581 gtctgcactt gctgccagta acggcttagc atcttttgtt cagcggggac ttcaatatca
    14641 ccggttagaa gaatgctatt cgtcccgtca taaaccttaa ccacacagga atggttattt
    14701 cctttatcgt tgctagcttg taaaggccag tgcacgctga aacgcaatcc ttgccattgc
    14761 cacgcttcgc cacgcacaca gggctgatga tgttcccagt ttaacggact tctgatccat
    14821 aacatcggcc atgtgtgcaa tattgagtcc agccctcccc ggtgatccag atgttcatga
    14881 ctcagaataa cgccttccgg ttcaagatta tgccagtgga gccaggggat aatcagttgt
    14941 tgcccactat ccccttcggg ccaggccagt cctgtgtcat agagaatcgc tttgccgttt
    15001 ctggctatca ccattgccag cccttgcccg acatcaagca tgtacacctg ccactcgtca
    15061 ggtcgaggtt tttgccacag cggccagcac atcagcaagc ctacagccac acacattgct
    15121 ggcaacgttc gccaggcgtt taatcgccat accaccagta agaaccatgg ggaaaatgat
    15181 agccattgcc aacgttcagc aatgttgatc cacccttctt gcaaactctt taacccccag
    15241 aaaagtaaag ccaaagaccg gtcggcaaga aaccataacc cttgctccag gattaacggc
    15301 ccgcttaaat gcacaaccat cgcggcgagg atcaacggaa ccgtgataaa tgtcaccaag
    15361 ggaattgcta atagatttgc aataaacgag gtcagactaa tgccatgaaa tatgacgatt
    15421 tgcacaggca taagcaggag tgtgattccc agttgcaaat gaatgaggga aacaactgca
    15481 cgcaataccg gcggcagttg ccactcagga cagggaaacc actggtacca aaaaatcagt
    15541 gccgcgaccg cagcggcaga gagccataaa ctttgcgaga gaatggcaac aggatccatc
    15601 agcaaaattg ccgccagaca acatatccat acatcccagc cactccactg tcgcccactt
    15661 aacttaagca ttccccacgt agcaagcgcc accacggtac gcaatgcagg aggttgcatt
    15721 cccgtcaacc aggcataaaa agcagcacag cagattccac caattaatgg catttgccag
    15781 tggatccagc gcccaggcag aaaaacttgc ccaccgcgaa tgagtccggc agccagcaac
    15841 gccgcaaaag cgatgtgcaa tcccgatatc gccattaaat gcgccgttcc agtatcacgc
    15901 atgatatttt tgatttcttt ggggacggat aaccgttccc ccatacctaa accaagaata
    15961 accgcattcc acatataggg ttgcagcgtt gtttgtagtg acgccagata ctgtgcacgc
    16021 aggctacaat tcggttcaat gacacttgcc tgcagaaagc ggccgatgag cggctgatgc
    16081 tgggcaatgg cataacgctg gctatcaaag ccgccatcat taagttggcc atgaactgca
    16141 cgaactttga gtttcattga ccattgttgt ccagcacaaa ccgcttgcgg aagatattcg
    16201 ccatacagca caagacctgg cgcagggaat atacgtcgac cttgtagatg agtaatttga
    16261 ccgtaatgag tggtcatgcc gtcagttgca gtgatctcaa caattgcatc ctgcgtcgcg
    16321 ccagttaagg tttctcctgc ccacaaaatt tgctttgctg ataatatgcc ccaaacgaaa
    16381 aacagcaacg tcagcgcgat ataacggacg gttttaacag ggataaatgc cagtacgcag
    16441 gcgaagagag tcagaaacgc aagggttaat gtcccaggca attggggcaa aatcagcaac
    16501 ggaaaaattc cgcaaattat gcatacgccg actgtcgtta ttttcatgca cccctccctg
    16561 tttatggaaa gtgtgcaact ttgttgagcg gttgtctggt gggaattttg cgttccccga
    16621 ggcacattca gaagaattta acgaaagggt gaaaactgct caaaactctg cgaggcagct
    16681 tccagttcct gattagagaa atgaaaaaag cacccgacag gtgcttttct cgcgttcaag
    16741 tttgagtaaa aacttaaccg taaatattgg cgcgatcgcg cagttcttta ccaggtttaa
    16801 agtgaggaac gtattttcct tccagttcta ctttatcgcc agtcttcgga ttacgtccgg
    16861 tacgtggtgc gcggtagtgc aaagagaaac tgccgaaacc gcggatttca atacgctcgc
    16921 cctgcgcaag agtcgaggcc atatgctcca gcatctcttt tactgcatct tcaaccgtct
    16981 tggcgggaat gtgcgattgc tgggtggcaa gtctttctat caattctgac ttggtcatga
    17041 ttcctccggt tccttaaagg caaattaagc ggctgctgtt gctgcattga ttaagggcgg
    17101 ccgtagccgc ccttagtgct tgattacagg acgaaacctg caatctgtca agtaaactca
    17161 acaaacttcg gaataaaaat cccgaagagt cagagaatta ctcgccttta gctgctttga
    17221 aagcttcagc cattgcgttg ttggagaagt ttgcatcttc ctgtttgtta acagttgcga
    17281 ttgcatcttt ctcgtcagct tcgtctttcg cacgaacaga caggctgatt gcgcggtttt
    17341 tacgatcaac gccggtgaat ttagcttcaa cttcgtcgcc aacgctcaga accagggtag
    17401 cgtcttcaac gcggtcacgg gatgcttcag aagcacgcag gtaaccttca acgccgtcag
    17461 ccagttctac ggttgcgcct ttagcgtcaa ctgcagttac tttaccggtt acgatagcgc
    17521 ctttcttgtt cagagcaacc cagttgttga acggatcttc tgcgagctgt ttaacgccca
    17581 aggagatacg ttcacgttct gcgtcaacct gcagaacaac tgcagcgatt tcgtcgcctt
    17641 ttttgtattc acgaactgct tcttcgcctg caacgttcca ggagatgtca gacaggtgaa
    17701 ccaggccgtc gatgccgccg tctaggccga tgaagatacc gaagtcagtg atagacttga
    17761 ttttaccttc aacacggtcg cccttgttgt gggtttccgc gaactgctgc cacgggttag
    17821 ctttgcactg tttcagaccc agggagatac gacgacgttc ttcgtcgata tccagaacca
    17881 taacttccac tacatctcca acgttaacaa ctttggacgg gtggatgttt ttgttggtcc
    17941 aatccatttc ggaaacgtgt accaggcctt caacgccttc ttcgatttca acgaagcagc
    18001 cgtagtcggt caggttggtc acgcgaccag tcagtttggt accttccgga taacgtttag
    18061 cgatagctac ccacggatct tcgcccaact gtttcaggcc cagggataca cgggtacgtt
    18121 cgcggtcgaa cttcagcact ttaacagtga tttcgtcgcc cacgttgacg atttcgctcg
    18181 gatgcttaac gcgtttccag gccatgtcag tgatgtgcag caggccgtca acgccgccca
    18241 gatcaacgaa tgcaccgtag tcagtgaggt tcttaacgat acctttaact tccatgcctt
    18301 cctgcaggtt ttccagcagc tgatcgcgct ctgcgctgtt ttcggattcg ataacggcac
    18361 gacgagaaac aacaacgttg ttgcgcttct gatccagctt gattacttta aattcaagct
    18421 ctttgccttc caggtgcaga gtgtcacgca ccggacgaac gtctaccaga gaacctggca
    18481 ggaacgcacg aataccgttc agctcaacag tgaagccgcc cttaactttg ccgttgataa
    18541 caccggtaac agtttcagca tcttcgtaag ctttttccag cgtgatccag gcttcgtgac
    18601 gtttagcttt ctcacgggac agcagagttt caccgaagcc gtcttctact gcgtccagag
    18661 caacgtcaac ttcgtcacct acctggattt ccagctcgcc ctgggcgttt ttgaactgct
    18721 cagccgggat ggcggactca gatttcagac cagcgtcaac cagtactacg tctttgtcga
    18781 tagcaacaac aacgccacga acgatagaac ccgggcgggt ttcgatttct tttaaggact
    18841 cttcaaagag ttgagcaaaa gattcagtca tgtttaatct tcaggtttat atttaacgtc
    18901 cacctggctc catgccggat ggggttgttt aacatacccg ctgtcattcc attgcaacgg
    18961 gggtactgca aattcggtcg cttatgcgag agccaatttc tggcgcgcgt attgtagcgc
    19021 tttttcaatc acttgctcaa tgcttaaggt ggtggaatcc aacactaaag catcggctgc
    19081 cggaaccagt ggcgctaccg ctcggttacg atcgcggtcg tcgcgttctt tgatctcggc
    19141 caaaaggcgc tcaaagttaa cactaaagcc cttctcctgc aactgtagca tgcggcgatg
    19201 cgcacgttct tccgaggagg cgtcaaggaa aattttcact ggtgcatcag ggaataccac
    19261 cgttcccatg tcgcggccat cggcaatcag acctggtaat tcgcgaaacg cgcgttggcg
    19321 acgcaataat gcttcacgaa cgcgtgggaa tgtcgcgact tgtgaagccg cattcgccac
    19381 ttcctgagta cgaatttcgc cgctgacatc ttccccttcg aggatcactt ccagattgcc
    19441 attggttgac acaaaacgta catccagatg ggatgccagc ggtaccagcg catcttctga
    19501 cgcaacatca acatggtgat gtaatgccgc caatgccagt acgcgataaa ttgcacccga
    19561 atccagcaga tgccattgca atgcttccgc catagcctta cacaaggtgc ctttccctgc
    19621 accgcttggg ccatcaatgg taataaccgg ggcaattgcc gtcatcttta tctccttaaa
    19681 acaggcgtac cgttaacata accgcgcgca ttatacgcgc cgacgccaca aatcgttaac
    19741 gttgtgtgca aaaaccagtt ttgtctgtat tcagatgggg atttattgcg caattatagc
    19801 gggctggcag aagaccagcc cgaaagatga caatgattta cttaccagag gcgatacgat
    19861 cacggatgtg ttgcgcacgc tctgttgatg gtgggtgaga gtcaaacatg gactgggtgc
    19921 gaccgccatc cagactagcc agtttttcaa agctgccaac cagcccctag gtgctgatgc
    19981 cacgtttctt caacagatca aaggagaaat catctgcttc ggactcttta tcacgggagt
    20041 atttagcatt aatagcgcct tctgcgatat cacccaattg tgagcgggaa agctgggaag
    20101 ccacaccgct ggtagctgaa atggcatcgc gtgcggcaac gatcgcataa gaaactttca
    20161 tttcagccag cgagtgaccc aacgcgacgt ggcccagttc atggcccaga acaccttcaa
    20221 tttcgttgtc attcatcatg tccatcaggc cactgtagac acggacacag ccgttcgcca
    20281 tcgcccatgc gttgacgtcg ctggtcatat aaacctatag ttgaccggcg tgccattaat
    20341 attgttaccc aatgctttgg cgatttttgc cagacgttta ccgtacttgc tggatttact
    20401 tgcgacttga ttgccgctgt ccatttcggc acagccctga ttggcaatcg cttttgcatc
    20461 ggcatcgctt aatgttgctg ctttataggc atttaaaccg gagctgatag ccatattggt
    20521 atcaataccg tgggtatttt gacaccctgt cagtaatgct gcagaggtcg caatcgccag
    20581 cagtaattta gtattcttca tgtgaatcat ccgttgatta atcatatata aacattatgt
    20641 atcaacaact tacattgaca agcgacgcta ccattaatca aaatgactca caaggtccga
    20701 aaaaaaacgc cgacaatgtg
//
LOCUS       DADMJB010000060        20603 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.060, whole genome shotgun sequence.
ACCESSION   DADMJB010000060 DADMJB010000000
VERSION     DADMJB010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20603
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.060"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(56..481)
                     /gene="nudI"
                     /locus_tag="JN078_001989"
     CDS             complement(56..481)
                     /gene="nudI"
                     /locus_tag="JN078_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphatase NudI"
                     /protein_id="HAY9041205.1"
                     /translation="MRQRTIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEYGE
                     RIEEALRREIREELGEQLLLTEITPWTFSDDIRTKTYADGRKEEIYMIYLIFDCVSAN
                     REVKINEEFQDYTWVKPEDLVHYDLNVATRKTLRLKGLL"
     gene            760..1302
                     /locus_tag="JN078_001990"
     CDS             760..1302
                     /locus_tag="JN078_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311165.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041206.1"
                     /translation="MKKIALAGLAGMLLVSASVNAMSISGQAGKEYTNIGVGFGTEST
                     GLALSGNWTHNDDDGDVAGVGLGLNLPLGPLMATVGGKGVYTNPNYGDEGYAAAVGGG
                     LQWKIGNSFRLFGEYYYSPDSLSSGIQSYEEANAGARYTIMRPVSIEAGYRYLNLSGK
                     DGNRDNAVADGPYVGVNASF"
     gene            1402..2604
                     /locus_tag="JN078_001991"
                     /pseudo
     CDS             1402..2604
                     /locus_tag="JN078_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416752.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide mononucleotide deamidase-related
                     protein YfaY"
     gene            2824..3606
                     /locus_tag="JN078_001992"
     CDS             2824..3606
                     /locus_tag="JN078_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HAY9041207.1"
                     /translation="MLESSKVPALTRAIDILNLIARIGPCSAATIIDTLGIPKSTAYL
                     LLNELRRQRFLSLDHQENFCLWTRLVELSGHALSKMDLRELARPRLTQLMDTTGLLCH
                     LGIIDNGSAYYILKVESSATISVRSHEGKSLSLYRSGIGKCLLSWQPAAVQQSIIEGL
                     VWEQATPTTITHPQQLHEELARIRRQGWSYDNGEDYPDVRCVAAPVFNANNELTAAIS
                     VVGTRLQINEEYRDYLAGKSIACARDISRLLGWKSPFDLQAS"
     gene            3621..4826
                     /gene="rhmD"
                     /locus_tag="JN078_001993"
     CDS             3621..4826
                     /gene="rhmD"
                     /locus_tag="JN078_001993"
                     /EC_number="4.2.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311162.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnonate dehydratase"
                     /protein_id="HAY9041208.1"
                     /translation="MTLPKIKQVRAWFTGGATAEKGAGGGDYHDQGANHWIDDHIATP
                     MSKYRDYEQSRQSFGINVLGTLVVEVEAENGQTGFAVSTAGEMGCFIVEKHLNRFIEG
                     KCVSDIKLIHDQMLNATLYYSGSGGLVMNTISCVDLALWDLFGKVVGLPVYKLLGGAV
                     RDEIQFYATGARPDLAKEMGFIGGKMPTHWGPHDGDAGIRKDAAMVADMREKCGEDFW
                     LMLDCWMSQDVNYATKLAHACAPYNLKWIEECLPPQQYEGYRELKRNAPVGMMVTSGE
                     HHGTLQSFRTLSETGIDIMQPDVGWCGGLTTLVEIAAIAKSRGQLVVPHGSSVYSHHA
                     VITFTNTPFSEFLMTSPDCSTMRPQFDPILLNEPVPVNGRIHKSVLDKPGFGVELNRD
                     CNLKRPYSH"
     gene            4883..6172
                     /locus_tag="JN078_001994"
     CDS             4883..6172
                     /locus_tag="JN078_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416749.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9041209.1"
                     /translation="MSTALLDAVVKKNRVRLIPFMLALYVLAFLDRSNIGFAKQTYQI
                     DTGLSNEAYALGAGIFFVVYAFLGVPANLLMRKLGARTWIGTTTLLWGFLSAAMAWAD
                     TEAKFLIVRTLLGAAEAGFFPGMIYLTSQWFPQRNRASIMGLFYMGAPLALTLGSPLS
                     GALLEMHGFMGHPGWFWMFVIEGLLAVGAGVFTFFWLDDTPEQARFLSKQEKTLLINQ
                     LASEEQQKVTSRLSDALRNGRVWQLAIIYLTIQVAVYGLIFFLPTQVAALLGTKVGFT
                     ASVVTAIPWVAALFGTWLIPRYSDKTGERRNVAALTLLAAGIGIGLSGLLSPVMAIVA
                     LCVAAIGFIAVQPVFWTMPTQLLSGTALAAGIGFVNLFGAVGGFIAPILRVKAETLFA
                     SDAAGLLTLAAVAVIGSLIIFTLRVNRTVAQTDVAHH"
     gene            6190..6993
                     /gene="yfaU"
                     /locus_tag="JN078_001995"
     CDS             6190..6993
                     /gene="yfaU"
                     /locus_tag="JN078_001995"
                     /EC_number="4.1.2.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxy-L-rhamnonate aldolase"
                     /protein_id="HAY9041210.1"
                     /translation="MNALLTNPFKERLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLL
                     IDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKSLIKQVLDIGAQTLLIPMVDTA
                     DQARQVSSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDN
                     LDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAV
                     APDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSGKNGPRIKGSY"
     gene            complement(7034..7936)
                     /locus_tag="JN078_001996"
     CDS             complement(7034..7936)
                     /locus_tag="JN078_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000156133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISNCY family transposase"
                     /protein_id="HAY9041211.1"
                     /translation="MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQT
                     LRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAA
                     MQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDIT
                     IVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQ
                     CGDTSRFTRFIEEIAERSPLQKERLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLE
                     QGIDRDQVLAATQLSEADLAANNH"
     gene            complement(8129..9319)
                     /gene="glpC"
                     /locus_tag="JN078_001997"
     CDS             complement(8129..9319)
                     /gene="glpC"
                     /locus_tag="JN078_001997"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic glycerol-3-phosphate dehydrogenase
                     subunit C"
                     /protein_id="HAY9041212.1"
                     /translation="MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLK
                     DGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMG
                     SVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSIAAQQAQYK
                     DQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQ
                     AITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWR
                     KLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAG
                     TYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLA
                     QALA"
     gene            complement(9316..10575)
                     /gene="glpB"
                     /locus_tag="JN078_001998"
     CDS             complement(9316..10575)
                     /gene="glpB"
                     /locus_tag="JN078_001998"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708132.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase subunit GlpB"
                     /protein_id="HAY9041213.1"
                     /translation="MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGS
                     LDLLSHLPDGQPVADIHSGLESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQL
                     QGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLH
                     ELDLSVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMI
                     LMPACFGLADDKLWRWLNEKLLCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPG
                     DEVKKVTCKNGVVNEIWTRNHADIPLRPHFAVLASGSFFSGGLVAERNGIREPILGLD
                     VLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIA
                     QGCGGGVCAVSALHAAQQIAQRAGGQQ"
     gene            complement(10565..12193)
                     /gene="glpA"
                     /locus_tag="JN078_001999"
     CDS             complement(10565..12193)
                     /gene="glpA"
                     /locus_tag="JN078_001999"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic glycerol-3-phosphate dehydrogenase
                     subunit A"
                     /protein_id="HAY9041214.1"
                     /translation="MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIAT
                     GATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLS
                     FQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLD
                     AKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAE
                     YADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYN
                     EIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIV
                     LLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEP
                     AEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVEN
                     LNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKG
                     VQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL"
     gene            12466..13824
                     /gene="glpT"
                     /locus_tag="JN078_002000"
     CDS             12466..13824
                     /gene="glpT"
                     /locus_tag="JN078_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012131518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter"
                     /protein_id="HAY9041215.1"
                     /translation="MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLV
                     RKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL
                     AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV
                     WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP
                     PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS
                     PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI
                     ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG
                     YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRN
                     GG"
     gene            13829..14905
                     /gene="glpQ"
                     /locus_tag="JN078_002001"
     CDS             13829..14905
                     /gene="glpQ"
                     /locus_tag="JN078_002001"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HAY9041216.1"
                     /translation="MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLP
                     EHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRY
                     YAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNH
                     STGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRI
                     KNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADG
                     IGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDAL
                     YNKAGVNGLFTDFPDKAVKFLNKE"
     gene            complement(14947..15189)
                     /locus_tag="JN078_002002"
                     /pseudo
     CDS             complement(14947..15189)
                     /locus_tag="JN078_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311149.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            15368..16018
                     /gene="inaA"
                     /locus_tag="JN078_002003"
                     /pseudo
     CDS             15368..16018
                     /gene="inaA"
                     /locus_tag="JN078_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416740.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide kinase InaA"
     gene            complement(16072..16326)
                     /gene="yfaE"
                     /locus_tag="JN078_002004"
     CDS             complement(16072..16326)
                     /gene="yfaE"
                     /locus_tag="JN078_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-like diferric-tyrosyl radical
                     cofactor maintenance protein YfaE"
                     /protein_id="HAY9041217.1"
                     /translation="MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGS
                     CRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM"
     gene            complement(16326..17456)
                     /locus_tag="JN078_002005"
     CDS             complement(16326..17456)
                     /locus_tag="JN078_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006683700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase 1 subunit
                     beta"
                     /protein_id="HAY9041218.1"
                     /translation="MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQ
                     LSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISI
                     PELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDE
                     LIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFA
                     FAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDL
                     FVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIP
                     WINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL"
     gene            complement(17603..19888)
                     /gene="nrdA"
                     /locus_tag="JN078_002006"
     CDS             complement(17603..19888)
                     /gene="nrdA"
                     /locus_tag="JN078_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HAY9041219.1"
                     /translation="MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELR
                     SHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPAL
                     YDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNR
                     VTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTP
                     TRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHT
                     GCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMD
                     YGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQR
                     VKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLN
                     DVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAM
                     GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGECP
                     WFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSET
                     SSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLV
                     GIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAED
                     AQDDLVPSIQDDGCESGACKI"
BASE COUNT         4845 a         4992 c         5526 g         5240 t
ORIGIN      
        1 aattcgttaa ccactaaatt ttcaatctga cagccagtga tggctgtcat cattgttaaa
       61 gaagaccttt caaacgtaac gtttttcggg tggcaacatt caaatcataa tgcaccagat
      121 cttcaggttt tacccacgtg tagtcctgaa actcttcgtt tattttcact tctcggttgg
      181 cagaaacgca gtcaaaaatc aggtaaatca tataaatctc ttccttgcga ccatctgcat
      241 acgtcttggt gcgaatatca tcgctgaagg tccacggcgt gatttctgtc aaaagcagct
      301 gttctcccag ttcttcgcga atttcgcggc gtagtgcctc ttcaattcgt tcgccatact
      361 ccacgccgcc acccgaaagc gcccattgac cggggaaaac gccgcgatcg tcggccattt
      421 tgcacagcag ataagcacca tcattttgaa tcaaagggca tacaatagtc cgttgtcgca
      481 caggggtatt ccttataaat aaaaagaaac catgagaata cggtaactca gaaatatgtg
      541 aaagtgacag taatctcttt tgcgatgata actgcactta ttattatttt tgtgtgtatc
      601 ggtaaagtgt gtttattttt tcggcgttta attatttaag aagtatttag ttacaataag
      661 tgactagatc ccttttttcg ctcattgaat cctctgtgcc aggcagtaca atcccgcagc
      721 tttgggaatt ttgattaatt gcttgtggga aaggggataa tgaaaaaaat tgcgctagca
      781 ggtctggccg gaatgctgtt ggtttctgca tcggtcaatg caatgagcat cagcggtcag
      841 gcgggtaaag aatacaccaa tattggtgtc ggttttggga ctgaatcgac gggcctggcg
      901 ttaagcggta actggacaca taacgacgac gacggtgacg tcgctggcgt ggggctgggg
      961 ttgaatctgc ctctagggcc gttaatggcg accgttggcg gaaaaggcgt ttacaccaac
     1021 ccgaattacg gcgatgaagg ttatgccgca gcggtaggag gtggtttgca gtggaaaatt
     1081 ggcaacagct tccgtttgtt tggcgagtat tactactctc cggattcact ctccagcggt
     1141 attcaaagtt atgaggaagc gaatgctggc gcgcgttaca ccattatgcg tccagtcagt
     1201 attgaggcgg gttatcgcta cctgaatttg tcgggtaaag atggtaaccg cgacaacgcc
     1261 gtggctgacg gcccgtatgt tggggttaac gccagtttct gatcccttcc ggcgcggcat
     1321 tctgtcgcgc cattcagttt cttactacgc cttatctccc tttgcgttat agtgattcga
     1381 taacaaaagc aggagataac catgttaaaa gtggaaatgt tatccaccgg ggatgaagtg
     1441 ttacacgggc aaatcgttga cactaacgct gcctggctgg ccgatttttt ctttcatcag
     1501 gggctgccat tatctcgcct caatacggtg ggggataacc ttgatgactt agtcaccatt
     1561 cttcgcgaac gtagtcagca cgccgatgtg ctgatcgtta acggcgggct gggaccgacc
     1621 agcgatgatt taagcgcact cgccgctgcg acagcaaaag gtgaaggcct ggtgctgcat
     1681 gaagcctggc tcaaagagat ggaacgctat ttccacgaac gtggacgagt aatggcaccg
     1741 agcaaccgta aacaagcgga gctgcctgcc agtgctgaat ttatcaataa cccggtaggc
     1801 accgcctgtg gttttgccgt gcagcttaat cgttgcctga tgttctttac tcccggcgta
     1861 ccgtcagaat ttaaggtgat ggtcgagcac gaaatcctgc cgcgcctgcg cgagcgtttt
     1921 tctttaccac agccgccggt ttgtctgcgt ttaactacct ttggtcgttc ggaaagcgat
     1981 ctggcacaaa gcctggacac tctacaactg ccgccgggcg taacaatggg ctatcgctct
     2041 tcaatgccga ttatcgaact gaaactcacc ggaccggcaa gcgagcaaca ggcgatggaa
     2101 aaactgtggc tggacgttaa acgtgttgcc ggacagagcg tgattttcga aggcaccgaa
     2161 ggactgcccg tgcagatcag tcgcgaattg caaaaccgcc agttcagcct gacgttgagc
     2221 gagtaattca ccggtggttt attggctttg caactttctc gcgcaggtgc tccattgctg
     2281 gcgtgtgaag tggttccttc acaggaagaa aacctggcgc aaactgcgca ctggattaca
     2341 gaacggcggg ccaaccattt tgccgggctg gcactggctg tttcgggttt cgagaacgaa
     2401 catctcaact ttgcgctagc cacaccagac ggcactttcg ctctgcgtgt gcgtttcagc
     2461 actacgcgct acagcctggc tatccgtcag gaagtgtgcg caatgatggc actgaatatg
     2521 ctgcgccgtt ggttaaacgg ccaggatatc gccagtgagc atggctggat tgaggttatt
     2581 gagtccatga ccttatctgt ctgattccgc cactctgtgc cggtttactg caccggcaca
     2641 ttccccctcc ggcaaaactt gtccaacctg ttgcactcaa taagaaaaaa tccgtgcact
     2701 gattcacaaa tttgtgcgta atttctccag tccgctggac gaggagcggg atttgatgcg
     2761 cttcacaatt ttactccccc tgagcaacga gactgattcc agtatctaag actggagtcc
     2821 agtatgttgg aatcaagcaa agttcccgcc ctgacacggg ctattgatat tctaaatttg
     2881 attgcccgca ttggcccctg tagtgctgcg acgatcattg acacattggg aatccctaaa
     2941 agcacggcct atttgctgct taatgaactc aggcgtcagc gttttcttag ccttgatcac
     3001 caggaaaatt tttgtttgtg gaccaggctg gtggagcttt ctggtcatgc gttaagcaag
     3061 atggatctcc gggaactggc tcgaccgcgt ttgacgcaac tgatggatac caccgggctg
     3121 ttatgtcatc tggggattat tgataacggc agcgcttatt acattttaaa agtggagtca
     3181 tcagccacta tcagcgtgcg ttcccatgaa ggaaaaagcc tttcgcttta tcgctccgga
     3241 ataggtaaat gcctgctttc ctggcaacct gcagcggtac agcaaagtat tatcgaaggg
     3301 ctggtctggg agcaggcgac acccacaacg attactcatc cacagcaact tcacgaagaa
     3361 ctggcgcgta ttcgccgtca gggctggagc tatgacaacg gcgaagatta ccccgatgtc
     3421 cgttgtgtcg ctgcgccggt gtttaacgcc aataacgagc ttaccgctgc gatctcggtg
     3481 gtcggtaccc gcttacaaat caatgaagaa taccgtgatt atctggcggg caagtccatt
     3541 gcctgcgcca gggatatttc acgtctgttg ggatggaaaa gtccctttga cttacaagcc
     3601 tcataacaat ggagaacatc atgaccctac caaaaattaa acaggttcgc gcctggttta
     3661 ctggcggtgc gacagcagaa aaaggcgctg gcggcggtga ttatcacgac cagggggcga
     3721 atcactggat agacgatcat attgccaccc cgatgagtaa ataccgcgat tacgagcagt
     3781 cacgccagtc atttggcatt aacgttcttg gcacgttggt tgttgaagtc gaagcagaaa
     3841 acggccagac cggattcgct gtttcgacag ccggtgaaat gggctgtttt atcgtcgaaa
     3901 aacaccttaa ccgtttcatt gagggtaaat gtgtcagtga tatcaaactg atccacgatc
     3961 aaatgctcaa tgccaccctg tattactccg gctctggtgg cttggtgatg aatacgattt
     4021 cctgtgtcga tctggctctg tgggatctgt tcggcaaagt ggtcgggctt ccggtttata
     4081 aacttttagg cggcgctgtt cgtgatgaga ttcagttcta cgccacaggt gcgcgtccgg
     4141 atctggcaaa agagatgggc tttatcggtg gcaaaatgcc gacgcactgg gggccacatg
     4201 atggcgatgc ggggatccgc aaagatgccg ctatggtcgc ggatatgcgt gaaaaatgcg
     4261 gtgaagattt ctggttaatg ctcgactgct ggatgagtca ggacgtgaac tatgcgacca
     4321 aactagccca cgcttgcgcg ccctataacc tgaaatggat cgaagagtgc ctgccgccac
     4381 agcagtatga aggttatcgc gaactgaaac gcaacgcgcc agtcggaatg atggtcacca
     4441 gcggtgagca ccacggcaca ctgcaatctt ttcgtacgct ttcagaaacc ggtatcgaca
     4501 ttatgcagcc ggatgttggc tggtgcggtg gtttaaccac gctggtggaa attgccgcaa
     4561 tcgccaaatc cagggggcaa ctggtggtgc cgcacggttc gtctgtttac tctcaccatg
     4621 cggtgatcac cttcaccaat acgccattca gcgaattcct gatgaccagc ccggattgtt
     4681 caacgatgcg tccgcagttt gacccgattc tgctcaatga gccggttccg gtgaatggtc
     4741 gtattcataa atcagtgctt gataaacccg gttttggcgt cgaactcaat cgtgactgca
     4801 atttgaaacg cccctacagc cactaatcac tccgggcgtt gctgtgacaa cggtaacgcc
     4861 cacatattct aaggagcttt ttatgagcac cgctttgctt gacgccgtgg tgaagaaaaa
     4921 ccgtgtgcgt ttaattccgt ttatgttggc gctgtatgtg ctggcgtttc tcgaccgttc
     4981 gaatatcggt tttgccaaac agacctacca gattgatacc gggttgagta atgaagctta
     5041 tgcgctggga gcaggcattt tctttgtggt atatgcgttt ctgggggttc cggcgaatct
     5101 tttgatgcgc aaactggggg ccagaacctg gattggtacg acaacactgc tgtggggatt
     5161 tctttcggca gccatggcat gggccgatac tgaagcgaaa tttctgatag ttcgcactct
     5221 gcttggtgct gcggaggccg gatttttccc tggtatgatt tatctcacct cgcaatggtt
     5281 tccgcagcgt aatcgcgcca gcattatggg gctgttctat atgggcgcac cgctggcgtt
     5341 aacactggga tcaccgcttt ccggcgcgct gttggagatg catggattta tggggcatcc
     5401 cggctggttc tggatgtttg tgattgaagg attgttggca gtcggtgctg gggtattcac
     5461 attcttttgg cttgatgaca caccggagca ggcacgtttt ctgagtaaac aagaaaaaac
     5521 gttgcttatc aatcaactgg caagtgaaga acaacagaaa gtgacttctc ggctgagcga
     5581 tgcgctgcgt aatggccgag tctggcaact agcgattatc tacctgacca ttcaggtggc
     5641 ggtttacgga ttaattttct tcctgccgac ccaggttgcg gcattgctgg gaacaaaagt
     5701 gggctttaca gcgtcggtgg tcaccgccat tccgtgggtt gcggccttgt ttgggacctg
     5761 gcttattccg cgctattccg ataaaaccgg cgaacggcgt aatgtcgcag cgctgacatt
     5821 actggcggcg ggcattggta ttggtctgtc cgggctgctt tctccagtaa tggcgatcgt
     5881 agcgctgtgt gttgcagcta tcgggtttat tgccgtgcag ccggtgttct ggacgatgcc
     5941 gacacaactg ctttccggta cggcgctggc tgcggggatt ggttttgtaa acctgtttgg
     6001 tgcagtgggc gggtttattg ccccgatcct gcgcgtgaaa gcagaaacgt tatttgccag
     6061 cgatgcggca ggattactga cactggcagc ggtggcggtc atcggttcgc tgattatttt
     6121 cactctgcgt gtaaatcgta ctgttgcgca gaccgacgtg gcacatcatt aaataggtta
     6181 aggaacacga tgaacgcatt attaaccaat ccctttaaag aacgtttacg caagggcgaa
     6241 gtgcaaattg gtctgtggtt aagctcgact acttcttata tggcagaaat tgccgctact
     6301 tccggttatg actggttgct gattgacggg gagcacgcgc caaacaccat tcaggatctt
     6361 tatcaccagc tacaggcggt agcgccctat gccagccaac ccgtgatccg tccggtggaa
     6421 ggcagtaaat cgctgattaa acaagttctg gatattggcg cgcaaactct attgatcccg
     6481 atggtcgata ctgccgatca ggctcgtcag gtgtcgtctg ccacgcgcta tcctccctac
     6541 ggtgagcgtg gtgttggggc cagtgtggca cgggctgcgc gctggggacg cattgagaat
     6601 tacatggcgc aagtcaacga ttcgctttgt ctgttagtgc aggtggaaag taaaacggca
     6661 ctggataacc tggacgagat cctcgacgtc gaagggattg atggcgtgtt tattggacca
     6721 gcggatcttt ctgcgtcgtt gggctacccg gataacgccg ggcacccgga agtgcagcga
     6781 attattgaaa ccagcattcg gcggatccgt gctgcgggta aagcggctgg ttttctggct
     6841 gtggctcctg atatggcgca gcaatgcctg gcgtggggag cgaactttgt cgctgttggc
     6901 gttgacacga tgctctacag cgatgccctg gatcaacgac tggcgatgtt taaatcaggc
     6961 aaaaatgggc cacgcataaa aggtagttat tgatatcaaa ggcccatggg gatcggctgt
     7021 gggcctgtgt taattagtgg ttattcgctg ccagatcggc ttcgcttagc tgggtggccg
     7081 cgagcacctg gtcacgatca atgccctgtt ccagcatgcg caaagcaatt ttaatggctt
     7141 gttcatgcat accttcctgc cagccaattt gatgcccttc ctgccgtagc cgttcagcaa
     7201 tagtcattaa tctctccttt tgtagtggtg aacgttcggc aatctcctca ataaaacggg
     7261 tgaaacggga ggtatcgccg cattgcagca gataattaaa cagtgtttgt agctggctgt
     7321 cattagtgaa gcctctaacc aaaagcgtgg tgatcctgtc gaccatgccg attaaatcgc
     7381 ggtcgcgaat atgcttttga atcagttcca gcagagctat acgccgatgt tgcatgatct
     7441 catcgtcagg tacgatggtg atatccacca acggaaaagc ttcggtgtac aactgccggg
     7501 caagttgcgg atcgtcaaac tcatccagcc agttaagtga gtacgggtag ggcgatgttt
     7561 cgccatgata aaacagcaat ggcaccacca gcggaactct gtcatagcct ttatccaggt
     7621 gacgctgcat ggcggcagtg gcatagcgca ttagccgaaa agccatattc ttttctgcag
     7681 agctttgatg ttcaatcacg cagtagatat agccgtcacc gtcgctggtt tccacggacc
     7741 acaaaacatc cgagtagtaa gcgcgtaaac ttttttcaat aaaactagtg ggttccaggc
     7801 gtaaggtttg caggttgcaa agcttgcgca gtggttctgg taaatgtatt tcgagaaaat
     7861 cccgtgcggt ttcgggtgtg aacataaagg ttttaaatac cgcatcatgc ggggaggagg
     7921 ttgttgattc ggtcatggtt gtccgtcacc tgatatttat gatgacgcga cattacggtt
     7981 atcctaggcc tttgacatct gccagtttca gcctttgcga gacgttttca gaggaatttt
     8041 cactgcgttg caacgcatac attgggcacg gaatcgtgta cgcaaaaatg cccggtaacc
     8101 acatgcttac cgggcatcag aaaggagttt aagccagcgc ctgggccagt agcgtaatcg
     8161 gatgttcgca gcgaagactt gtggacatct caatctgcca tttacaggtt tcgcagtcgg
     8221 tgaccaccag atctgcgccg ctttcttcta tctggcggaa cagtggtgcg ccgatggctt
     8281 gtgaggtggg gtagttctct tttttgaaac cgtaagtacc cgcaataccg cagcactggg
     8341 aatccagcac cgttaactca agccccggga ttttacgcaa cagctccagg gtgtagagcg
     8401 tccagcccat tttttccata tggcacggag tgtgataaac cactttcagc ggcagcggtt
     8461 tcagcggtaa cgttttgcct tcgtccagct tgcgccacag ccagcgggtt gccagttcga
     8521 tatgatcgcg caagcctttg ttgtcgacat tcagcacttc cgggtattcg tcgcgcaggg
     8581 caaatgtaca ggttgaggag gtggcaatca ccggaatgcc ttttactccc acagcttcgc
     8641 ggatcgactc tacattcgta attgcctgtt tgcgtgcttt atcggtaaag ccgttggcga
     8701 ttagcggtac gccgcagcat ttttctttgc tgagcagttg tacaccggta cccattgcgt
     8761 tgagcacttt aattaaatct ttacctaact gcggatggtt gtagttaacg aagcagccgt
     8821 gaaagaaagc gacctggtct ttatattgtg cttgctgagc cgctatgctg cgataccagc
     8881 gacggaacgt gccgaaggag tatttcggta gcgtgcgacg atgatcgatt tttaacgccg
     8941 catcaagcag ctgccgcacc ggtttcagcg aggtagcggt gttgacgatt ggtgcgaacg
     9001 gcgtggaaac gctacccatc aggtcggtat gactcaacac aaaattacgc agcgacgggc
     9061 gcgtggtgtc atattttgcc cgcgcgcgct ggataatatc gccaatcttc acatcggacg
     9121 ggcaggcgac ttcacaacgt ttgcagttga tgcaatattt cagcgcctcg tcatacagtg
     9181 cgccatcttt caaacgcaga cgctcgccat ccggcccggc ttgttttggc cctggataac
     9241 cgggattcac ccggctcacc gggcaggcgg tggtgcagac ggtgcactta atgcagtttt
     9301 cgaagctggt gtcgttcatt gttggcctcc tgcgcgttgg gcaatctgtt gagcggcatg
     9361 taaagcactg acggcacaaa caccgccgcc gcatccctgg gcgatgggat caaatccgcc
     9421 cagcaccgaa ccgatggcaa acaggttctc aatggtttgc cctgcctgcg acgggcgtag
     9481 cgtctcatca gtggttacac cgaactgctg ccacggttgc ggcgcaaaaa aatcgccctt
     9541 ataccattca ccccgcgtgg cggtttgtag cacatcaagg ccgagaatcg gctcgcgaat
     9601 gccgttacgt tccgctacca gtccgccact aaagaaactg ccgctggcga gaaccgcgaa
     9661 atgtggacgt agcggaatat cggcgtgatt gcgggtccag atttcattca ctacgccatt
     9721 tttacaggtc acttttttca cttcatcgcc cggcatccac acgccaccct ggcgcacaaa
     9781 ctggcgctgt aactggtttt gcagacgaat gcccagcacg gaaggcggca gcgttggcaa
     9841 aagcatcagt gaacaaagta gtttttcatt caaccaacgc cacagtttgt catcggccag
     9901 gccgaagcag gcaggcatca ggatcatttc gcaggtattg gcgacaggaa taagcgcatc
     9961 aagtaacagc ggccagtttt cttcattatc aaggaaacgg gcgatattca cagcgcgaaa
    10021 ttcggtggcg ttattgcgca ggacatccag ttccggcagc tctatttctg cggtttcaac
    10081 cgaaagatcc agttcgtgca acgaagccgc cgcaagatgc gcctgaaaat ccatcaggcc
    10141 gcttatcccg accacacata ttttcttcgc gggcaacggc cagacgggga cttctggcga
    10201 acttagccag gtagagcgca gagtgccgag cggcgtaatc cgctggtgag ccagttctac
    10261 gctgccctgc aattgcgcac cgctttcagc gattaatgcc tgcgcctggc aagcgagatc
    10321 gagcacgcgt tgtggcccga gaagagagta aggatgtgca ggtgcctgct gacgcaaaga
    10381 ttccagtcca ctgtgaatgt ctgccacggg ttgaccatct ggcagatggc tcagcaaatc
    10441 cagcgaaccg gatgagaaat gcaacgcgct ttgaccacgc gtgacaatgg cacagcgcag
    10501 gccgtgtttt tgcagttgca ggccacagag taatccggcg aggccgccgc ccataatgac
    10561 agtatcaaag cgcatctttc tgctccttct ccagaccaca cagtccctga taaacccagc
    10621 gggtaaattc gctttcgcgc agtgcgtctc cccaggcgat gggttgcacg cctttccagc
    10681 gttcgttaag gaaggtggaa agttgctcga tagattgcgc ggacgtcgtg acgttaaacc
    10741 gttgcagcag tccggcagcg cggcaggcgc agagttcgcc ctggcaggtg cccatcccca
    10801 cacgggtacg acggcgtaaa tccagcaggc tattaacgtt taaattttct accgcgtact
    10861 gcacttcacc cgcagttacc gcttcgcact cacataccag gctacggtgc agacggcctt
    10921 cgctcagcca ggcaggcgtg cgatcgccat gacgataaac cgcagaaccg cgcagcgggg
    10981 caggcaggga gatgacttta cgcaaggtaa cttcagcggg ttcttgtgaa ccaggcagtg
    11041 ccagatcggc agtcgtacag gggcgcgtgt tgcccagttt gcggcatacc gcgtcggtag
    11101 cccattcagc catcagccga taggtcatca gtttgccacc ggtgatggtg ataaatccgt
    11161 ccagaccatc gcgttcagca tggtcgagca gcacgatgcc acggctgacg ttacgtccgc
    11221 tcggatcgtc atcgctggca accagcgggc gcacgccaga ataggcccgc aaaatgcgcg
    11281 ttttcgccat cacgggggcc agtttttccc cttcacgcag cagaatatca acctcttctg
    11341 ccgtcactcg attatcgtca atctcgttgt aatcaatacg taaagaggtg gtaccaatca
    11401 gcgaaatggt atcgccaggc accagaatat cggcgtcgga aggtttacgg cagcggttga
    11461 tcacatgctg gttaatgcgg tgatccatga tcagcagcga tcctttcgcc gggaacatgc
    11521 gaatgcgcag atcggcatat tcggcaatgt gttgccccca gatcccagcg gcattaacca
    11581 cgacaggtgc atgaagggcc tgagtttcgc cggtgagatg gttacgtaca cgaacaccgc
    11641 acaccgtcgc gccttcacga atcagccccg tgacttcatg agcggtaagg ataacggcac
    11701 cgtgttcttt ggcatccagc atgtttgctg cggtcagacg aaatggatca acggtgccat
    11761 ccggaacttt caccgcgcca atcagtgccg ggttaacggc aggttcgata atgcgcgctt
    11821 gctgcgggtc tatagcttct gcgctgatcc ctgcttcttc gcaggcgcga ataaaagtgg
    11881 cctggaatga gaggtcatct tccggcaggg tgataaacag gccgttggtt ggttcaacgc
    11941 agtgacgtgc aatgcgtttc aggatctggt tttcactaat gcattcgcgg gccgattccg
    12001 catcggttac cgcatagcgc gcaccgctgt gcagcaggcc gtggttacgc ccggtggcac
    12061 cggttgcgat gtcgtggcgc tcaaccaaaa tcacgcgcag cccgcgcagg gcacagtcgc
    12121 gggcaatccc ggctcccgtt gcgccgccgc caatgataat cacgtcactt gattgcgagt
    12181 cgcgagtttt cattgttatc cctctgaagt tcgtttttta ccatttagcc atagtaaaaa
    12241 catgaattgt ttgatttcgc gcatgttcgc tcataattcg aaagtgaaac gtgatttcat
    12301 gcgtcatttt gaacattttg taaatcttat ttaataatgt gtgcggcaat tcacatttaa
    12361 tttatgaatg ttttcttaac atcgcggcaa ctcaagaaac ggcaggttct ctcactgaat
    12421 caggctgtta atcataaata agaccacggg ccacggaggc tatcaatgtt gagtattttt
    12481 aaaccagcgc cacacaaagc gcgcttacct gctgcggaga tcgatccgac ttatcgtcga
    12541 ttgcgctggc aaattttctt ggggatattc tttggctatg cggcttacta tttggttcgt
    12601 aagaactttg cgcttgctat gccttatctg gtcgagcagg gattctctcg cggtgattta
    12661 ggtttcgcgc tttcggggat ctcgatcgct tatggatttt cgaaattcat aatgggttcg
    12721 gtatcagatc gctcgaatcc gcgcgttttc ctccccgcag gtttgattct ggcggcggca
    12781 gtgatgttgt ttatgggctt tgtgccatgg gcgacgtcga gcattgcggt gatgtttgta
    12841 cttttgttcc tctgcggttg gttccagggg atggggtggc cgccgtgtgg tcgtactatg
    12901 gtgcactggt ggtcgcagaa agaacgtggc ggcattgtgt cagtgtggaa ctgtgcgcac
    12961 aacgttggtg gtggtattcc gccgctgctg ttcctgctgg ggatggcctg gttcaatgac
    13021 tggcatgcgg cgctctatat gcctgctttc tgcgccattc tggtggcatt attcgccttt
    13081 gcgatgatgc gcgatacccc gcaatcctgt ggcttgccgc cgatcgaaga gtacaaaaat
    13141 gattatccgg acgactataa cgaaaaagcg gaacaggagc tgacggcgaa gcaaatcttc
    13201 atgcagtacg tactgccgaa caaactgctg tggtatatcg ccatcgccaa cgtgttcgtt
    13261 tatctgctgc gttacggcat cctcgactgg tcaccgactt atctgaaaga ggttaagcat
    13321 ttcgcgctgg ataaatcctc ctgggcctac ttcctttatg aatatgcagg tattccgggc
    13381 actctgctgt gcggctggat gtcggataaa gtcttccgtg gcaaccgtgg ggcaaccggc
    13441 gttttcttta tgacactggt gaccatcgcg actatcgttt actggatgaa cccggcaggt
    13501 aacccaaccg tcgatatgat ttgtatgatt gttatcggct tcctgatcta cggtcctgtg
    13561 atgctgatcg gtctgcatgc gctggaactg gcaccgaaaa aagcggcagg tacggcagcg
    13621 ggctttaccg ggctgtttgg ttacctgggc ggttcggtgg cggcgagcgc gattgttggc
    13681 tacaccgtgg acttcttcgg ctgggatggc ggctttatgg taatgattgg cggcagcatt
    13741 ctggcggtta tcttgttgat tgttgtgatg attggcgaaa aacgtcgcca tgaacaatta
    13801 ctacaaaaac gcaacggagg ctaatggcat gaaattgacg ctgaaaaacc ttagcatggc
    13861 gatcatgatg agcactatag tcatgggaag cagtgcaatg gcggcggaca gcaacgaaaa
    13921 aatagtcatc gcccatcgcg gtgccagtgg atatttgccg gagcatacgc tgccagcaaa
    13981 agcgatggcg tatgcgcagg gagcggatta tctggaacag gatttggtga tgaccaaaga
    14041 cgaccatctg gttgttctgc atgaccatta tctcgatcgt gttactgatg ttgccgatcg
    14101 tttcccggat cgggcgcgca aagacggtcg ttactacgcg atagatttca cgctggatga
    14161 aattaagtcg ttgaaattta ccgaaggttt cgatattgaa aacggtaaaa aagtgcagac
    14221 ttatccgggg cgtttcccaa tgggtaagtc cgacttccgg gtgcacacct ttgaagaaga
    14281 gattgaattt gttcaggggt taaatcactc taccgggaaa aatatcggta tttatccaga
    14341 aatcaaagcg ccgtggttcc atcatcagga agggaaggat attgcggcaa aaacgctgga
    14401 agtgctgaag aaatatggtt acaccggtaa agacgataaa gtttatttgc aatgttttga
    14461 tgctgatgag ctgaagcgta ttaagaatga gctggaaccc aaaatgggca tggagctcaa
    14521 tctggtacag ctgattgcct ataccgactg gaatgaaacg cagcagaaac agccggatgg
    14581 aagctgggtt aattacaact acgactggat gtttaagccg ggtgccatga aacaggtggc
    14641 ggaatatgca gatggtattg gtccggatta ccatatgttg attgaggaga catcgcagcc
    14701 gggtaatatc aaactcactg gcatggtgca agatgctcag cagaataaac tggtagtgca
    14761 tccttatacc gtgcggtcag ataaactgcc tgaatacact cctgatgtga atcagttata
    14821 tgatgctctg tataacaaag cgggtgtaaa tgggctgttt actgatttcc ctgataaggc
    14881 agtaaaattt cttaataaag agtaatgtta ctgcaggatg gcgttcatgc gccatcctgt
    14941 ctcatatcaa atttttccaa tcgccactaa ttgttccatg cacatttgta gtaaaaacag
    15001 tggactgcct tctaccggct tttctttagc cagcaacgaa atctgtcgat agaaagttgg
    15061 ttcgagagga acggaacaca attcacctgc aatgcttttc agcgttaact ctggttgtaa
    15121 ggcgatgcct aatccctgtc gaataaaatt catcgctgta tccgcctgat taaattcaca
    15181 ttttatctgc tgggcgcact attagtggta gtggctggtg gaatctatgc gctgcaaatg
    15241 aagggtaaaa gcggtgtcaa gctagtagtg gcaaaagaaa ttcattaata cgacacgttt
    15301 cattaagatt ttcctcaggt agccacctat agtcattgtc gttaataaaa acgacaggcg
    15361 atagggtatg gcagtttcag caaagtacga cgaatttaat cactggtggg caacagaggg
    15421 cgactgggtt gaagagccta actatcgccg taatggtatg agcggggtgc aatgcgtcga
    15481 gcgcaacggc aaaaagctgt atgtaaagcg catgacgcat catctgtttc attctgtacg
    15541 ttatccgttc ggccgaccaa cgattgtccg tgaggttgcg gtaattaaat aactggaacg
    15601 ggccggtgtc atcgtgccga agatcgtttt tggtgaagcg gtgaaaattg agggtgaatg
    15661 gcgagcgttg ctggtgactg aagatatggc ggggttcatc agcattgctg actggtatgc
    15721 ccagcatgca gtatcgcctt attctgacga agtacggcaa gccatgttga aagcagtggc
    15781 gctggcgttt aagaaaatgc atagcattaa tcgtcagcat ggctgttgtt atgttcgcca
    15841 tatctatgtg aaaacagaag gtaaggcaga agctggtttt cttgacctgg agaaaagtcg
    15901 tcgccgcttg cgtcgcgata aagcgattaa tcatgacttc cgccagctgg aaaaatatct
    15961 ggagccaatc cccaaagcgg actgggagca ggtgaaagcg tattactacg ccatgtaatc
    16021 gttgtaggcc agataagaca cataagcgtt gtatctggca ctacaaccaa ttcacatctc
    16081 gatttcaata tcgccttttg cccggcaaca acagggcaaa atttcccccg gctgaataaa
    16141 ggctaacggt tcggcaatcc agtcaacttg acctgcaacc aggcgtgtgc gacaggagcc
    16201 gcagtaacct tcgcgacact ggtactcaac cgccacattg tgggattcca gcgctgccag
    16261 aagggaaggg tgttcatcct ggcacagcag ttgtgtgcca gtgatgcgca gggtaacgcg
    16321 ggccatcaga gctggaagtt actcaaatcg tcggtgtcca cttccgagtc aatctgcccg
    16381 accagataag aactgacttc cacttcctgc ggagcaacct gcacgttatc agacaccagc
    16441 caagtgttga tccacgggat cgggttggag cgcgtctgga acggcagatc caaaccgact
    16501 gcctgcatac ggatattggt gatgtattca acgtactggc agagaatgtc tttattcaga
    16561 ccaatcatcg aaccgtcgcg gaacagataa tccgcccagt ctttctcctg ttgagctgcc
    16621 tgaacaaaca ggtcatagca ctcctgctta cactcttcgg caatttccgc catctcagga
    16681 tcgtccgcgc cgctgcgcag cagattcagc atatgctggg tgccggtcag gtgcagggct
    16741 tcgtcgcggg caatcaggcg aataattttg gcgttgcctt ccatcaattc gcgttctgca
    16801 aaggcaaagg aacaagcaaa gctgacgtag aagcggatcg cttccagcgc gttaacgctc
    16861 atcaggcaaa gatacagttt tttcttcagc tcgcgcaggc taacggttac ggttttaccg
    16921 ttaacggtgt gggtgccttc gcccagaagg tgccagtagc tggtcatttc gatcagttca
    16981 tcgtaatagc tggagatccc ttccgcacgt ttctggatct gctcgttggt gacgatatcg
    17041 tcaaacacaa cagacggatc gttaacgata ttacgaatga tatgagtata ggaacgggaa
    17101 tgaatcgttt ctgagaacgc ccaggtttcg acccaggttt ccagttccgg aatagaaata
    17161 agcggcaata gcgccacgtt cggactacga ccctgaatgg aatccagcag cgtctgatat
    17221 ttcaggttgc tgataaaaat gtgtttttcg tgctccggca gcgcctggta atcgatacgg
    17281 tcgcgggaga cgtcaacttc ttccggacgc cagaagaaag agagctgctt ttcgatcagc
    17341 ttttcgaaga tgtcatattt ttgctgatcg tagcgggcca cgttgaccgg ctgaccaaag
    17401 aacatcggtt ctttgagctg atcatttttc gtctgtgaaa aggtggtata tgccatgagt
    17461 gtgtcctgtt gggagtttaa tgccggataa ggcattttac gccgcatcct gtgcctgatg
    17521 cgacgctggc gcgtcttatc aggcctacaa atccgagccg taggccggat aaggcgttca
    17581 cgctgcatcc ggcatctcaa tatcagatct tacatgcgcc gctttcgcag ccatcgtcct
    17641 ggattgacgg taccagatcg tcctgcgcgt cttcagcgcc gtcacgggtg ttctgataat
    17701 acagcgtttt gaccccgaat ttgtaggcgg tgagcaggtc tttcagcaac tgctgcatcg
    17761 gcacttttcc tgacgggaaa cgtgacggat cgtagttggt gttagcagag atcgactgat
    17821 cgataaattt ctgcatgata cctaccagtt gcaggtagcc atcgttaccc ggcatttccc
    17881 acagcagctc ataggcgtcg tgcaggtgct cgtagtccgg caccacctgg cgcaaaatac
    17941 cgtctttcga cgctttgatg ctgacgtaac cgcgcggcgg ttcaataccg ttagtggcgt
    18001 tagagatctg cgaagaggtc tcggacggca tcagggcaga aagcgtggag ttacgcaggc
    18061 cgtgcgtttt gattgattca cgcaatgctt cccagtcgta atgcagcggc tcattagcga
    18121 tggcatccag atctttctta taggtatcga tcggcaggat ccctttcgcg taagtggttt
    18181 cgttaaacca cgggcactcg ccttgctctt tagccagctc attagacgct ttcagcaggt
    18241 aatactgaat cgcttcgaag gttttatgcg tcaggttgtt ggcgctgccg tcggagtagc
    18301 gtttaccgtg cttcgccagg tagtaagcga agttgatcac accaataccc agcgtacgac
    18361 gacccatcgc tccacgtttg gcggccggga tcgggtaatc ctgataatcc agcagcgcgt
    18421 caagtgcacg aaccgccaga attgccagct cttccagttc atccaggtta ttaattgcgc
    18481 ctaggttgaa agcagacagc gtacacagcg cgatttcacc gttctcgtcg ttgacgtcgt
    18541 tcagcggttt ggtcggcagg gctatctcca ggcacaggtt agactgacgc actggcgcga
    18601 tggccggatc aaacgggcta tgggtattac agtggtcaac gttctgaata tagatacgac
    18661 cggtagacgc acgttcctgc atcatcagcg agaacagctc aacggctttc acacgctgct
    18721 tgcggatgct gtcgtctttc tcatatttgg tatacagacg ttcaaactct tcctgatcgg
    18781 cgaagaacgc gtcgtacagc cccggtacgt cggacgggct gaacagggtg atatcttcac
    18841 ctttcagcag acgggtatac atcagtttgt tgatttgtac cccgtagtcc atatgacgca
    18901 cgcggttgcc ttccacacca cggttgtttt tcaacaccag caggctttcc acttccagat
    18961 gccacatcgg gtagaacagc gttgccgcac cgccgcgcac accgccctga gagcaggatt
    19021 tcaccgctgt ctggaaatgt ttgtagaacg gaatgcagcc ggtatggaac gcttcaccac
    19081 cgcgaatcgg gctacccagc gcacgaatac gcccggcgtt gatgccgatc ccggcacgct
    19141 gggaaacgta tttaacaatc gcgctggagg tggcgttgat ggaatccagg ctgtcaccgc
    19201 actcgatcag tacgcaggag ctgaactgac gagtcggggt acgcacgccg gacatgattg
    19261 gcgtcggcag cgaaatttta aatgtggaaa ccgcgtcgta aaaacgcttc acatattgca
    19321 ggcgcgtttc acgcgggtag ttcgagaaca ggcacgcggc aaccagaata taaaggaact
    19381 gggcgctctc atagatttcg ccggtcacgc ggttctgtac cagatatttg ccttccagct
    19441 gcttaacggc agcataagag aaggtcatat cacggtcgtg atcgataaac gtgtccatct
    19501 gcttgaactc ttcttccgtg tagtcttcca gcagatgatt atcgtatttg cccatctcga
    19561 ccattttcac cacgtggtcg tacagcgcag gcggctcaaa ctggccgtag gcttttttac
    19621 gcaggtggaa gatcgccagg cgcgcggcga gatactgata atccggcgca tcacgggaga
    19681 tcaggtctgc ggcagccttg ataatggttt cgtggatgtc agaggtcttg ataccgtcat
    19741 aaaactgaat gtgggagcgc agctcgacct gggaaatcga aacgttatgc agtccttctg
    19801 ccgcccaatc cagaacgcga tggattttgt cgagattgat gcgctctgtg ctaccgtcgc
    19861 gctttgtcac cagcagattc tgattcatgt atgtcgtacc tgtttttgga attctttccg
    19921 caatagtttc atgcagacta cctgtagtac gggaagctgc ttagaacact atatataggg
    19981 ggtatgtttg ggattcactg caagatagtg tgaaaatggc cctcttgcaa gtgcataact
    20041 ttgtggataa ctcaggaagg aaaaagtggc tttcgcgcac cttaggtcag acaaggtgtc
    20101 cgggaaagtc aatgggaaga gaaaaatttg ttaaaaataa ctgttcggcg atttcttgaa
    20161 cggcagaata ggttggataa attgatatag atggtttatt aatctttttg ctaatgattg
    20221 caaaaattga tctaagcacg agtcatcaca taatctgatg tatcagttgt ggtcaatata
    20281 taagcgaatg taagcgattg ttgatgtcga aatggttgtt ttctattcgg ttattgttaa
    20341 atgcgaagcc attttgttaa tttaccttat attataaaaa aattattcat tactttaatt
    20401 tagtttaaat ataactggta tcccttaagg ttattaactt gaattatgac gcactgatat
    20461 tattcatcaa ataataacaa aatagccatt gcatcgggtt ggacaattta caaaagaaag
    20521 ataacccata ttgtataatg cgtttaaata tgccgtctta tataaaatga tggtcagatt
    20581 aatatgcgga ttatctttct acg
//
LOCUS       DADMJB010000061        20572 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.061, whole genome shotgun sequence.
ACCESSION   DADMJB010000061 DADMJB010000000
VERSION     DADMJB010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20572)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20572)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20572
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.061"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            144..347
                     /locus_tag="JN078_002007"
     CDS             144..347
                     /locus_tag="JN078_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000051842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AaeX family protein"
                     /protein_id="HAY9041220.1"
                     /translation="MSLFPVIVVFGLSFPPIFFELLLSLAIFWLVRRVLVPTGIYDFV
                     WHPALFNTALYCCLFYLISRLFV"
     gene            355..1287
                     /gene="aaeA"
                     /locus_tag="JN078_002008"
                     /pseudo
     CDS             355..1287
                     /gene="aaeA"
                     /locus_tag="JN078_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417708.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="p-hydroxybenzoic acid efflux pump subunit AaeA"
     gene            1293..3260
                     /gene="aaeB"
                     /locus_tag="JN078_002009"
     CDS             1293..3260
                     /gene="aaeB"
                     /locus_tag="JN078_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="p-hydroxybenzoic acid efflux pump subunit AaeB"
                     /protein_id="HAY9041221.1"
                     /translation="MGIFSIANQHIRFAVKLATAIVLALFVGFHFQLETPRWAVLTAA
                     IVAAGPAFAAGGEPYSGAIRYRGFLRIIGTFIGCIAGLVIIIAMIRAPLLMILVCCIW
                     AGFCTWISSLVRIENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCSEIVIGIVCA
                     IIADLLFSPRSIKQEVDRELESLLVAQYQLMQLCIKHGDGEVVDKAWGDLVRRTTGLQ
                     GMRSNLNMESSRWARANRRLKAINTLSLTLITQSCETYLIQNTRPELITDTFREFFDT
                     PVETAQDVHKQLKRLRRVIAWTGERETPVTIYSWVAAATRYQLLKRGVISNTKINATE
                     EEILQGEPEVKVESAERHHAMVNFWRTTLSCILGTLFWLWTGWTSGSGAMVMIAVVTS
                     LAMRLPNPRMVAIDFIYGTLAALPLGLLYFLVIIPNTQQSMLLLCISLAVLGFFLGIE
                     VQQRLLGSMGALASTINIIVLDNPMTFHFSQFLDSALGQIVGCVLAFTVILLVRDKSR
                     DRTGRVLLNQFVSAAVSAMTTNVARRKENHLPALYQQLFLLMNKFPGDLPKFRLALTM
                     IIAHQRLRDAPIPVNEDLSAFHRQMRRTADHVISARSDDKRRRYFGQLLEELEIYQEK
                     LRIWQAPPQVTEPVHRLAGMLHKYQHALTDS"
     gene            3352..3624
                     /locus_tag="JN078_002010"
     CDS             3352..3624
                     /locus_tag="JN078_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041222.1"
                     /translation="MNIYTFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDVLMN
                     DVLPLPLEIEFVHLGEKTRRRFGALILLFDEAEEELEGHLRFNVRH"
     gene            complement(3680..3943)
                     /gene="yhcN"
                     /locus_tag="JN078_002011"
     CDS             complement(3680..3943)
                     /gene="yhcN"
                     /locus_tag="JN078_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417705.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide/acid stress response protein YhcN"
                     /protein_id="HAY9041223.1"
                     /translation="MKIKTTVAALSVLSVLSFGAFAADSIDAAQAQNREAIGTVSVSG
                     VASSPMDMREMLNKKAEEKGATAYQITEARSGDTWHATAELYK"
     gene            complement(4309..4779)
                     /gene="argR"
                     /locus_tag="JN078_002012"
     CDS             complement(4309..4779)
                     /gene="argR"
                     /locus_tag="JN078_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001257852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HAY9041224.1"
                     /translation="MRSSAKQEELVKAFKALLKEEKFSSQGEIVAALQEQGFDNINQS
                     KVSRMLTKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHTSP
                     GAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPANGFTVKDLYEAILELFDQEL"
     gene            5214..6152
                     /gene="mdh"
                     /locus_tag="JN078_002013"
     CDS             5214..6152
                     /gene="mdh"
                     /locus_tag="JN078_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000861594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HAY9041225.1"
                     /translation="MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAV
                     DLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLV
                     QQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAE
                     LKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVSFTEQEVADLTKRIQNAGTEVVEAKA
                     GGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVE
                     ERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK"
     gene            complement(6215..7282)
                     /gene="degS"
                     /locus_tag="JN078_002014"
     CDS             complement(6215..7282)
                     /gene="degS"
                     /locus_tag="JN078_002014"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane-stress sensor serine
                     endopeptidase DegS"
                     /protein_id="HAY9041226.1"
                     /translation="MFVKLLRSVAIGLIVGAILLVAMPSLRSLNPLSTPQFDSTDETP
                     ASYNLAVRRAAPAVVNVYNRGVNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDAD
                     QIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGN
                     PYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTL
                     SFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQSGGI
                     DQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV
                     VMRDDKQLTLQVTIQEYPATN"
     gene            complement(7372..8739)
                     /gene="degQ"
                     /locus_tag="JN078_002015"
     CDS             complement(7372..8739)
                     /gene="degQ"
                     /locus_tag="JN078_002015"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine endoprotease DegQ"
                     /protein_id="HAY9041227.1"
                     /translation="MKKQTQLLSALALSVGLTLSASFQAVASIPGQVADQAPLPSLAP
                     MLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKG
                     YVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSD
                     KLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGAL
                     LNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEM
                     SADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIAT
                     TEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDCGKGI
                     KIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAKPAIIALQIVRGNESI
                     YLLMR"
     gene            complement(8893..9291)
                     /locus_tag="JN078_002016"
     CDS             complement(8893..9291)
                     /locus_tag="JN078_002016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1043 family protein"
                     /protein_id="HAY9041228.1"
                     /translation="MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAE
                     LDEYREELVSHFARSAELLDTMAHDYRQLYQHMAKSSSSLLPELSAEANPFRNRLAES
                     EASNDQAPVQMPRDYSEGASGLLRTGAKRD"
     gene            9485..10612
                     /locus_tag="JN078_002017"
     CDS             9485..10612
                     /locus_tag="JN078_002017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HAY9041229.1"
                     /translation="MQSVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSRP
                     PAPRTSGLMARVGKLWGKREDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQR
                     LHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLM
                     KALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTL
                     TQAHLWLSPLHDETRAQMDKLWLALAGAKRENSPTLEINHRPLATMGAENQTLAVSFT
                     TLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVS
                     AEVPLYEIYQGDRLKFEFQRCLSRLQEMQSEEYLKREHLAG"
     gene            10830..11258
                     /gene="rplM"
                     /locus_tag="JN078_002018"
     CDS             10830..11258
                     /gene="rplM"
                     /locus_tag="JN078_002018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HAY9041230.1"
                     /translation="MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEY
                     TPHVDTGDYIIVLNADKVAVTGNKCTDKVYYHHTGHIGGIKQATFEEMIARRPERVIE
                     IAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI"
     gene            11274..11666
                     /gene="rpsI"
                     /locus_tag="JN078_002019"
     CDS             11274..11666
                     /gene="rpsI"
                     /locus_tag="JN078_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000829824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HAY9041231.1"
                     /translation="MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETA
                     RMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAG
                     FVTRDARQVERKKVGLRKARRRPQFSKR"
     gene            12061..12699
                     /gene="sspA"
                     /locus_tag="JN078_002020"
     CDS             12061..12699
                     /gene="sspA"
                     /locus_tag="JN078_002020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stringent starvation protein A"
                     /protein_id="HAY9041232.1"
                     /translation="MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSFEIEHVEKD
                     NPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARGESRLY
                     MHRIEKDWYTLMNTIINGSASEADAARKQLREELLAIAPVFGQKPYFLSDEFSLVDCY
                     LAPLLWRLPQLGIEFSGPGAKELKGYMTRVFERDSFLASLTEAEREMRLGRS"
     gene            12705..13202
                     /gene="sspB"
                     /locus_tag="JN078_002021"
     CDS             12705..13202
                     /gene="sspB"
                     /locus_tag="JN078_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HAY9041233.1"
                     /translation="MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPME
                     YARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGT
                     MFEPEAAYDEDTSIMNDEEASADNETVMSVIDGDKPDHDDDTHPDDEPPQPPRGGRPA
                     LRVVK"
     gene            complement(13245..14611)
                     /gene="dcuC"
                     /locus_tag="JN078_002022"
                     /pseudo
     CDS             complement(13245..14611)
                     /gene="dcuC"
                     /locus_tag="JN078_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417694.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuC"
     gene            14991..15782
                     /gene="nanR"
                     /locus_tag="JN078_002023"
     CDS             14991..15782
                     /gene="nanR"
                     /locus_tag="JN078_002023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417693.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NanR"
                     /protein_id="HAY9041234.1"
                     /translation="MGLMNAFDSQTEDSSPAIGRNLRSRPLARKKLSEMVEEELEQMI
                     RRREFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSADT
                     IIGELSGMAKDFLSHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIDLLAKALEINSQ
                     SLDNNAAFIRSDVDFHRVLAEIPGNPIFMAIHVALLDWLIAARPTVTDQALHEHNNVS
                     YQQHIAIVDAIRRHDPDEADRALQSHLNSVSATWHAFGQTTNKKK"
     gene            15904..16797
                     /gene="nanA"
                     /locus_tag="JN078_002024"
     CDS             15904..16797
                     /gene="nanA"
                     /locus_tag="JN078_002024"
                     /EC_number="4.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate lyase"
                     /protein_id="HAY9041235.1"
                     /translation="MATNLRGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYV
                     GGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDA
                     VSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPG
                     VGALKQTSGDLYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQ
                     GIVKALKEGDIQTAQKLQTECNKVIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGP
                     VDEKYLPELKALAQQLMQERG"
     gene            16906..18396
                     /gene="nanT"
                     /locus_tag="JN078_002025"
     CDS             16906..18396
                     /gene="nanT"
                     /locus_tag="JN078_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312124.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialic acid transporter NanT"
                     /protein_id="HAY9041236.1"
                     /translation="MSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLT
                     EVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLAC
                     GFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVA
                     SQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILY
                     RGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSTGKRWPT
                     GVMLMVVVLFAFLYSWPIQALLPTYLKTDLAYNPHTVANVLFFSGFGAAVGCCVSGFL
                     GDWLGTRKAYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGIAGILPKLIG
                     GYFDTDQRAAGLGFTYNVGALGGALAPIIGALIAQRLDLGTALASLSFSLTFVVILLI
                     GLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGSAKNDLVKTKS"
     gene            18444..19133
                     /locus_tag="JN078_002026"
     CDS             18444..19133
                     /locus_tag="JN078_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HAY9041237.1"
                     /translation="MSLLAQLDQKIAANGGLIVSCQPVPDSPLDKPEIVAAMALAAEQ
                     AGAVAIRIEGVANLQATRAVVSVPIIGIVKRDLEDSPVRITAYIEDVDALAQAGADII
                     AIDGTDRPRPVPVETLLARIHHHGLLAMTDCSTPEDGLACQKLGAEIIGTTLSGYTTP
                     ETPEEPDLALVKTLSDAGCRVIAEGRYNTPAQAADAMRHGAWAVTVGSAITRLEHICQ
                     WYNTAMKKAVL"
     gene            19130..20005
                     /locus_tag="JN078_002027"
     CDS             19130..20005
                     /locus_tag="JN078_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312122.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine kinase"
                     /protein_id="HAY9041238.1"
                     /translation="MTTLAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPQALRDA
                     LAALVAPLQAHAQQVAIASTGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLSNLPTIA
                     INDAQAAAWAEYQALEGDITDMVFITVSTGVGGGVVSGGKLLTGPGGLAGHIGHTLAD
                     PHGPVCGCGRTGCVEAIASGRGIAAAAQGELMGADARTIFTRAGQGDEQAQQLIHRSA
                     HVLARLIADIKATTDCQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHD
                     AGLLGAALLAQGEKL"
     gene            20002..20466
                     /locus_tag="JN078_002028"
     CDS             20002..20466
                     /locus_tag="JN078_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF386 domain-containing protein"
                     /protein_id="HAY9041239.1"
                     /translation="MMMGEVQSLPSAGLHPALQDALTLALAARPQEKAPGRYELQGDN
                     IFMNVMTFNTQSPVEKKAELHEQYIDIQLLLNGEERILFGMAGTARQCEEFHHEDDYQ
                     LCSTIDNEQAIILKPGMFAVFMPSEPHKPGCVVGEPGEIKKVVVKVKADLMA"
BASE COUNT         4948 a         5114 c         5363 g         5147 t
ORIGIN      
        1 tagataacag cataacagtt acgctaatat attaaatatc aatctacagc aatgttgctc
       61 tcgcccggct ttccatgccc ttctctgcgg cgacagatgc tgaaaataat aacgcctgct
      121 ctctctatac aaccaaggtc aacatgagtc tgtttcccgt tatcgtggtg tttgggctgt
      181 ccttcccacc gatatttttt gaattgcttt tatcactggc gattttctgg ctggtgcgcc
      241 gggtacttgt gccaacaggt atctacgact ttgtctggca tccggcgttg ttcaacaccg
      301 cgctctattg ctgcttgttt tatttgatat cgcgactgtt cgtttgaggt tgaagtgaaa
      361 acactaataa gaaaattctc ccgtacggcc atcacggtcg tattagtcat tctggccttc
      421 atcgcaattt ttaatgcctg ggtctattac accgaatccc cctggacgcg tgacgcgcgc
      481 tttagcgctg acgtcattgc gatcgcgccg gacgtttctg gactcattac ccaggtgaat
      541 gttcatgata accagctggt gaaaaaagga cagatactgt tcaccatcga ccagccgcgc
      601 tatcaaaagg cgcttgagga agcgcaagcc gatgttgctt attatcaggt actggcacag
      661 gagaaacgcc aggaggccgg acgtcgtaac cgtctcggtg tgcaggcgat gtctcgcgaa
      721 gagatcgact aggctaacaa cgtactacaa acggttctgc atcagttagc gaaagcgcag
      781 gcgacccgcg atctggcaaa actggatctt gaacgcacgg tgatccgcgc gccagcagat
      841 ggctgggtga ccaacctcaa cgtctatacc ggtgagttta ttactcgagg atcaacggcg
      901 gttgcgctgg tgaaacagaa ctccttctat gtactggcct atatggaaga aactaagctg
      961 gaaggggtgc gtccggggta tcgtgcagag atcacgccgc ttggcagtaa caaagtgctg
     1021 aaagggactg ttgatagtgt tgccgcaggg gtcaccaacg ccagcagcac gcgtgacgac
     1081 aaagggatgg cgactataga ctctaacctt gaatgggtgc gtcttgcgca acgtgttccg
     1141 gttcgtattc gtctcgacaa ccagcaagag aacatctggc ctgcgggcac cactgctaca
     1201 gtggtggtca ctggcaaaca agatcgcgac gaaagccagg attcgttctt ccgtaaaatg
     1261 gcccatcgcc tgcgtgagtt tggttaatca cgatgggtat tttctccatt gctaaccaac
     1321 atattcgctt tgcggtaaaa ctggcgaccg ccattgtact ggcgctgttt gttggctttc
     1381 acttccagct ggaaacgcca cgctgggcgg tactgacagc ggcgattgtt gccgccggtc
     1441 cggcctttgc tgcgggaggt gaaccgtatt ctggcgctat tcgttatcgt ggctttttgc
     1501 gcatcatcgg cacatttatt ggctgtattg ccggactggt gatcatcatt gcgatgatcc
     1561 gcgcaccatt attgatgatt ctggtgtgct gtatctgggc cggtttttgt acctggatat
     1621 cctcgctggt acgaatagaa aactcgtacg cgtgggggct ggccggttat accgcgctga
     1681 tcattgtgat caccattcag ccggaaccat tgcttacgcc gcagtttgcc gtcgaacgtt
     1741 gtagcgagat cgttatcggt attgtgtgtg cgattatagc ggatttgctc ttttctccgc
     1801 gatcgatcaa acaagaagtg gatcgagagc tggaaagttt gctggtcgcg caatatcaat
     1861 taatgcaact ctgtatcaag catggcgatg gtgaagttgt cgataaagcc tggggcgacc
     1921 tggtgcgacg caccacgggg ctacaaggca tgcgcagcaa cctgaatatg gaatcttccc
     1981 gctgggcgcg ggccaatcga cgtttaaaag cgatcaatac gctatcgctg acgctgatta
     2041 cccaatcctg cgaaacttat cttattcaga atacgcgccc ggaattgatc actgatactt
     2101 tccgcgaatt ttttgacacg ccggtagaaa ccgcgcagga cgtccacaag cagctcaaac
     2161 gcctgcggag agttatcgcc tggaccgggg aacgggaaac gcctgtcacc atttatagct
     2221 gggtcgcggc ggcaacgcgt tatcagcttc tcaagcgcgg cgttatcagt aacacaaaaa
     2281 tcaacgccac cgaagaagag atcctgcaag gcgaaccgga agtcaaagta gagtcagccg
     2341 aacgtcatca tgcgatggtt aacttctggc gaaccacact ttcctgcatt ctgggcacgc
     2401 ttttctggct gtggacgggc tggacttccg gcagtggtgc aatggtgatg attgcggtag
     2461 tgacgtcact ggcaatgcgt ttgccgaatc cacgcatggt ggcgatcgac tttatctacg
     2521 ggacgctggc cgcgctgccg ttagggctgc tctacttttt ggtgattatc cctaataccc
     2581 aacagagcat gttgctgctg tgtattagcc tggcagtgct gggatttttc ctcggtatag
     2641 aagtacagca acggctactg ggctcgatgg gggcgctggc cagcaccata aatattatcg
     2701 tgctggataa cccgatgact ttccatttca gtcagtttct cgacagcgca ttagggcaaa
     2761 tcgtcggctg tgtgctcgcg ttcaccgtta ttttgcttgt gcgggataaa tcgcgcgaca
     2821 ggaccggacg tgtactgctt aatcagtttg tttctgccgc tgtttccgcg atgactacca
     2881 atgtggcacg tcgtaaagag aaccacctcc cggcacttta tcagcagctg tttttgctga
     2941 tgaataagtt cccaggggat ttgccgaaat ttcgcctggc gctgacgatg attatcgcgc
     3001 accagcgcct gcgtgatgcg ccgatcccgg ttaacgagga tttatcggcg tttcaccgac
     3061 aaatgcgccg cacagcagac catgtgatat ctgcccgtag cgatgataaa cgtcgtcggt
     3121 actttggcca gttgctggaa gaacttgaaa tctaccagga aaagctacgc atctggcaag
     3181 cgccaccgca ggtgacggaa ccggttcatc ggctggcggg tatgctccat aagtatcaac
     3241 atgcgttgac cgatagttag gtcaaaacca acgccaaaag tgtcggtttt ttcatggcta
     3301 tacttagcga tgcacggcag aactcgccgc gaaacgtgac ggtggcaata gatgaatatt
     3361 tatacctttg attttgatga gattgagagt caggaggatt tttatcgtga ctttagccaa
     3421 acctttggtc tggcgaaaga taaggtacgc gatctcgact cactatggga tgtgttaatg
     3481 aacgatgtcc tgccgctacc acttgagatt gaatttgttc atctgggaga gaaaacgcgt
     3541 cgccgttttg gcgcgttaat attgctgttt gatgaggcag aggaagagct ggaagggcat
     3601 ttgcgtttta atgttcgtca ttagcgcaaa aaaaagcccc cgaaccgggg gcaatatcgt
     3661 cggacaagac gatgagggtt tatttgtaca gttcagccgt agcgtgccag gtgtcaccgc
     3721 tacgagcttc agtaatctgg taggccgttg cgcctttctc ttccgctttt ttgttcagca
     3781 tttcacgcat atccattggc gaagacgcca caccacttac ggatacggtc ccgattgctt
     3841 cacgattttg tgcttgtgca gcatcaatgg agtcggcagc gaatgcaccg aaagagagaa
     3901 cagaaagtac gcttaatgca gctacagtgg ttttgatttt catgattttt acctcgacat
     3961 aatcttttag ctgggccttt gttttgtgac ccatatcaca aaatcaagca cacactaatt
     4021 attgaactaa ttaataccac gctaactgtt tcagttgata ctaagtgtta aaaatgtgaa
     4081 ttttaataac gaaaaagaat taaaaacacg gtcatttatt tttaattcta gtattttcaa
     4141 ttagataatg aattttgcat aatgtgcttt ttttaccgta tgtattcatt atgtgaatga
     4201 catgtcgcag taaaactgca ctattcgtta aattaatcgc aggggaaagc agggggttga
     4261 gagggataag caacattttc cccgccgcca gaagcgacgg ggcagagatt aaagctcctg
     4321 gtcgaacagc tctaaaatcg cttcgtacag gtctttgacg gtgaaaccgt tagcaggggt
     4381 ggtaaagatg gtgtcatcgc cagcgatggt gcccagaata ccttctgctt tgcccagtga
     4441 gtccagcagg cgagcaatta actgcgccgc gccagggctg gtatgaatca cgacaactgc
     4501 atcgttgtag tcgatatcca gcaccagatt cttcaatgga ctggaggtgg ttggtacacc
     4561 cagttcagct ggcaggcagt aaaccatttc cattttggca ttgcgtgtac gtacagcacc
     4621 aaacttggtc aacatccgcg agactttaga ctgattaata ttgtcaaagc cttgctcctg
     4681 caacgcggcg acgatttcgc cctgggagct aaatttctct tctttaagta atgctttaaa
     4741 tgctttaact agttcttctt gcttagccga gcttcgcata agtcacccga tatggtggtt
     4801 gatacaacat tattgtgcat acagatgaat ttttatgcaa acagtcaacc ctgaagaagg
     4861 ctgaaataat gttatgaaag agcgggattt tatcaaattt cgttattgag aaacatgcct
     4921 gcgtcacggc atgcaaattc tgcttaaaag taaattaatt gttatcaaat tgatgttgtt
     4981 ttggctgaac ggtagggtat attgtcacca cctgttggaa tgttgcgcta atgcataagc
     5041 gactgttaat tacgtaagtt aggttcctga ttacggcaat taaatgcata aacgctaaac
     5101 ttgcgtgact acacattctt gatatgtggt cattgtaaac ggcaattttg tggattaagg
     5161 tcgcggcagc ggagcaacat atcttagttt atcaatataa taaggagttt aggatgaaag
     5221 tcgcagtcct cggcgctgct ggcggtattg gccaggcgct tgcactactg ttaaaaaccc
     5281 aactgccttc aggttcagaa ctctctctgt atgatatcgc tccagtgact cccggtgtgg
     5341 ctgtcgatct gagccatatc cctactgctg tgaaaatcaa aggtttttct ggtgaagatg
     5401 cgactccggc gctggaaggc gcagatgtcg ttcttatctc tgcaggtgta gcgcgtaaac
     5461 cgggtatgga tcgttccgac ctgtttaacg ttaacgccgg catcgtgaaa aacctggtac
     5521 agcaagttgc gaaaacctgc ccgaaagcgt gcattggtat tatcactaac ccggttaaca
     5581 ccacagttgc aattgctgct gaagtgctga aaaaagccgg tgtttatgac aaaaacaaac
     5641 tgttcggcgt taccacgctg gatatcattc gttccaacac ctttgttgcg gaactgaaag
     5701 gcaaacagcc aggcgaagtt gaagtgccgg ttattggcgg tcactctggt gttaccattc
     5761 tgccgctgct gtcacaggtt cctggcgtta gttttaccga gcaggaagtg gctgatctga
     5821 ccaaacgtat ccagaacgcg ggtactgagg tggttgaagc gaaagccggt ggcgggtctg
     5881 caaccctgtc tatgggccag gcagctgcac gttttggtct gtctctggtt cgtgcactgc
     5941 agggcgaaca aggcgttgtc gaatgtgcct acgttgaagg cgacggtcag tacgcccgtt
     6001 tcttctctca accgctgctg ctgggtaaaa acggcgtgga agagcgtaaa tctatcggta
     6061 ccctgagcgc atttgaacag aacgcgctgg aaggtatgct ggatacgctc aagaaagata
     6121 tcgccctggg cgaagagttc gttaataagt aattgattag cgaataataa aaaaccggag
     6181 cacagactcc ggttttttgt tttgagcact cgacttaatt ggttgccgga tattcctgaa
     6241 tggtgacctg cagcgttaac tgcttatcat cacgcatcac tacaaccggg atcaccgaac
     6301 cagggcgaat ttctgccacc tgatccatcg tctccagagc agagatggcc ggtttgttat
     6361 ccaccgaaat aatcagatcg ttgacctgaa tacccgcatt cgccgccggg ccgtcaggtg
     6421 acacttcatt aaccacgatc ccttgcagtt gatctatacc accgctctgc gcgtgcagtg
     6481 gtgcgatctc acgtccacca atgccaatgt agccgcggat cacgcgccca tcgcggatca
     6541 gcttatccat aattttggtt gctaactgga aaggaatcgc aaagccgata ccttccggcg
     6601 tttcgccatc gttactctta tcaaacgaca gcgtgttaat gcccatcagt tctcccagcg
     6661 agttcaccag cgcgccgcca gagttaccgt ggttaatgga agcatcggtt tgtaggaagt
     6721 tttgccgccc ggtagggttc agaccgattc gccccgtggc actaataatc ccttgggtaa
     6781 tggtctgccc gaggttgtac gggttaccga tcgccagtac tacgtcgcca atgtgcggta
     6841 cgcgacgtgc attaattgga atggtaggta aaccgccagt ggcattaatt ttaagtaccg
     6901 ccagatcggt tagagagtca gatcccacca gcaatgcttc aaatacacgt ccatcctgta
     6961 aggcgacgat gatctgatcg gcgtcgttga tgacgtgttt attggtgatg atataaccgc
     7021 gttgatccat gattacaccg gatcccaggg tgcggatctc aagctggttg tgagagttgg
     7081 tgttcacacc acggttgtaa acgttaacca ccgctggcgc ggcgcggcga accgccagat
     7141 tatagctggc aggcgtctca tcggtactgt caaattgcgg agtggaaagc gggttaaggc
     7201 tgcgcagcga aggcatggca accagcagaa tagcgccgac aattaatcca atcgcaacgg
     7261 aacgtaagag cttcacaaac atgatggagg cgtcattaaa aaagggaacg gcagcagcat
     7321 accacgagtt aaccggacat cacacgtaag cctgatgccc ggtttacgac attaacgcat
     7381 cagcagatag atgctttcat tgccgcgtac aatttgcagg gcgatgatgg ccggttttgc
     7441 cgccagcact ttacgcattt cagcaatcga gttcacccga tcgcggttga cgccaatgat
     7501 cacatcgtct ttttgcaagc ctgcctgagc agctgggctt cctttgacaa cttcatcgat
     7561 cttaatacct ttgccgcaat cttttagctg accatcgctc aacgttgcac cttccagcgc
     7621 tggcgtgatc atttcagcgc tggccgacga agaggtgctg gtatcaagcg tcacttctac
     7681 ttccagtggt ttgccgttac gcagcaggcc aagcttcact ttcgtgcccg gctctgtagt
     7741 cgcgatacga gagcgcaact cagcaaagct attcagcggt ttgccgttga ggctggtaat
     7801 aatatcgccc gctttgacgc ccgcttttgc cgagccagaa cctggcaaca cttcgctgac
     7861 aaacgcgcca cgctgcacgt caaggttgaa ggctttggcg atatcggcac tcatctcggt
     7921 gcctttgatg cctaacaaac cgcgtttgat ttcaccaaag tcgataagct gctgcgccag
     7981 tgttcgcgcc atattactgg ggatggcaaa tccaatcccg acgctcccgc cgccaggcgc
     8041 aaggattgca gtgttgatgc caattaactc accgttaagg tttaatagtg caccgccgga
     8101 gttaccgcgg ttaatggaag catctgtctg gataaagttt tccagacctt caagattcaa
     8161 cccgctgcgg cctaatgcgg aaacaatgcc agaggtggcg gtttgcccaa ggccaaatgg
     8221 gttaccgacc gctacggcaa aatcaccgac gcgcaattta tcggagtcgg caatagcgat
     8281 ttgcgttaat ttgctcgggt tttgaatttg taacagggcg atatcgctct ggtcatcgct
     8341 accaatcagt tttgcatcaa actcgcgccc atcattgagc tgaatactga ttttctgtgc
     8401 ctgattaatc acatggttgt tggtcagcac atagccttta ctggcgttga tgatgacacc
     8461 ggaacctaaa ccttcgaagg gttgtgcagg ttgatccggt aaatcatcac caaaaaactt
     8521 tttgaattct tccgggattt tctgtccctg actggccgtt ccttccaccc gtacgctcac
     8581 cactgccgga agcacttttt ccagcattgg agccagactg gggagagggg cctgatcggc
     8641 aacctggcct ggaatcgacg cgacggcctg aaatgacgcc gagagagtta acccgacact
     8701 taacgctaat gcactcaaca gctgggtttg ttttttcatt attcctgctc tcgtacctga
     8761 atgataagaa aagagattca aaacagtttg atgttattga attttcagac ggctaacaat
     8821 gagacaccag attaaatgat agtcggggag ggagagaaga ggagggcgca atggctgcgc
     8881 ccgaaaaata aattagtcgc gcttcgcgcc agtacgcagc aggccggatg caccttcaga
     8941 atagtcgcga ggcatctgca ccggtgcctg atcgttgctg gcttcagact ctgccagacg
     9001 attacggaac gggtttgctt cagcagacag ttccggcagc aggctgctgg agcttttcgc
     9061 catgtgctga tacagctggc gatagtcgtg cgccatggta tccagtaatt ccgcgctgcg
     9121 ggcaaagtgg ctaaccagct cttcgcgata ctcgtccagt tcagctttat tcttttccag
     9181 ttcgtactgc aacgcctgtt gctggcgtag tttacgatta ccaaaacgca tggccacagc
     9241 accaataatg atgccgacga ctaacccaat tagcgcatat tcccaggtca tgaacatctc
     9301 ccgttgtctt ttgtttccgt agggtgttgg cttcaggctc catgcctacg gctgattatg
     9361 ccactataac cgttaattcc acagaagtgg aatcccgact gcatatcgcg tagtgtagaa
     9421 cggccttttt ttcgtcaacc gtgaacaacg gcgcaccgat tattcaagga ataataataa
     9481 gatcatgcaa agcgttaccc caacatcgca atacctgaag gcgctcaatg aaggcagcca
     9541 tcaacccgac gacgttcaaa aagaggccgt cagccgcctg gaaattattt atcaagaact
     9601 catcaatagc aggccaccag cccccaggac gagtgggcta atggcgcggg tcggtaagct
     9661 gtggggtaaa cgcgaagaca caaagcatac gccagtgcgt ggcttatata tgtggggcgg
     9721 tgtaggacgc gggaaaacct ggctgatgga ccttttctat caaagcctgc cgggagagcg
     9781 gaaacagcgc ctgcactttc accgttttat gctgcgggtg cacgaagagc taactgcctt
     9841 acaggggcag accgatccgc tggaaattat tgccgatcgc tttaaagccg aaactgacgt
     9901 gctctgtttt gacgaatttt ttgtttctga tattaccgac gccatgctac ttggcggtct
     9961 gatgaaagcc ctgttcgccc gcggtattac cctggtagca acgtcaaata ttccgccgga
    10021 cgaactttat cgaaatggct tgcaacgtgc gcgttttctg cctgcaatcg atgccattaa
    10081 acagcattgt gatgtaatga acgtggacgc tggtgttgat tatcgactgc gtacactcac
    10141 tcaggcgcat ctgtggcttt cgccactcca cgatgaaacc cgggcacaaa tggataaact
    10201 atggttggcg ctggcgggag cgaaacgcga aaattcaccg acgttagaaa tcaaccatcg
    10261 accgctggcg acaatgggcg ctgagaatca gacgcttgct gtctctttta ccaccttgtg
    10321 tgtcgatgcc cgcagccagc atgactatat tgcgctctca cgcctctttc atacggtcat
    10381 gttgtttgat gtaccagtta tgacgcggtt gatggagagc gaagcgcggc gctttattgc
    10441 gctggtggat gagttttacg agcgccatgt caaattagtg gtgagtgcag aagtgccgct
    10501 gtatgaaatt tatcagggcg atcggctgaa gtttgagttc cagcgttgcc tgtcacgtct
    10561 gcaagagatg caaagcgaag agtatctgaa gcgcgagcat ttggcgggtt aaaacctgtc
    10621 acaaatcaca aaaaggggtc gatctttgac cccgacttct ctataatcct gcgaccccac
    10681 gttacaagaa agttttttcc caaaactttt tgtgtgctgg cataggctat tcgaaggggt
    10741 aggtttgccg gactttgtcg tgtgaacctc aacaattgaa gacgtttggg tgttcaccaa
    10801 cgtgtaacta tttattgggt aagcttttaa tgaaaacttt tacagctaaa ccagaaaccg
    10861 taaaacgcga ctggtatgtt gttgacgcga ccggtaaaac tctgggccgt ctggctactg
    10921 aactggctcg tcgcctgcgc ggtaagcaca aagcggaata cactccgcac gtagataccg
    10981 gtgattacat catcgttctg aacgctgaca aagttgctgt aaccggcaac aagtgtactg
    11041 acaaagtgta ctatcaccac accggccaca tcggtggtat caaacaagcg acctttgaag
    11101 agatgattgc tcgccgtcct gagcgtgtga ttgaaatcgc ggttaaaggc atgttgccaa
    11161 aaggcccgct gggtcgtgct atgttccgta aactgaaagt ttacgcgggt aacgagcaca
    11221 accacgcggc acagcaaccg caagttcttg acatctaatc gggattatag gcaatggctg
    11281 aaaatcaata ctacggcact ggtcgccgca aaagttccgc agctcgcgtt ttcatcaaac
    11341 cgggcaacgg taaaatcgta atcaaccaac gttctctgga acagtacttc ggtcgtgaaa
    11401 ctgcccgcat ggtagttcgt cagccgctgg aactggtcga catggttgag aaactggacc
    11461 tgtacatcac cgttaaaggt ggtggtatct ctggtcaggc tggtgcgatc cgtcacggta
    11521 tcacccgcgc tctgatggaa tacgacgagt ccctgcgttc tgaactgcgt aaagctggct
    11581 tcgttactcg tgacgctcgt caggttgaac gtaagaaagt cggtctgcgt aaagcacgtc
    11641 gtcgtccgca gttctccaaa cgttaattgg cttctgctcc ggcagaaaac aattttcgaa
    11701 aaaacccgct tcggcgggtt tttttatagc taaaatctga atcagcgtaa aaactggaaa
    11761 gttgcttttt gctgccacct gacagacagg taaaacaaaa accacatcgc caataaggga
    11821 ctaagtcaac tatttcagac taaagcgcat ctctttttcc ccatttccgg catcgactca
    11881 ccacaaaggt cgcaaaatct ggtaaactat catccaattt tctgcccaaa tgtcgggtat
    11941 tgctcatttt ttgtttgatt ttcgaacaaa gagagtcgtt ccttactggg taacacaact
    12001 tctgactggc cacctggtgg ctggtagcag taaaaattct gactatacct ggaggttttc
    12061 atggctgtcg ctgccaacaa acgttcggta atgacgctgt tttccggtcc tactgacatc
    12121 tatagccatc aggtccgcat tgtgctggct gagaaaggtg taagtttcga gatcgaacac
    12181 gtggaaaagg acaatccgcc tcaggatctg attgacctca acccgaatca gagcgttccg
    12241 accctggtgg atcgtgagct gaccctgtgg gaatctcgca tcattatgga atatctggat
    12301 gagcgtttcc cgcatccgcc actgatgcct gtttacccgg tagctcgcgg tgaaagccgt
    12361 ctgtacatgc atcgcatcga aaaagactgg tacacgctga tgaacaccat catcaacggt
    12421 tcagcttctg aagcagatgc cgcacgtaag caactgcgcg aagaactgct ggcgattgcg
    12481 ccggtcttcg gtcagaagcc gtacttcctg agcgatgagt tcagcctggt cgattgctat
    12541 cttgctccgc tgctgtggcg tctgccgcaa ctgggcatcg agttcagcgg cccgggtgcg
    12601 aaagagctga aaggctatat gacccgcgtc tttgagcgtg actctttcct tgcttcttta
    12661 actgaagcag aacgtgaaat gcgtctgggc cggagttaat ctgtatggat ttgtcacagc
    12721 taacaccacg tcgtccctat ctgctgcgtg cattctatga gtggttgctg gataaccagc
    12781 tcacgccgca cctggtggtg gatgtgacgc tccctggcgt gcaggttcct atggaatatg
    12841 cgcgtgacgg gcaaatcgta ctcaacattg cgccgcgtgc tgtcggcaat ctggaactgg
    12901 cgaatgatga ggtgcgcttt aacgcgcgct ttggcggcat tccgcgtcag gtttctgtgc
    12961 cgctggctgc cgtgctggct atctacgccc gtgaaaatgg cgcaggcaca atgtttgagc
    13021 ctgaagctgc ctacgatgaa gataccagca tcatgaatga tgaagaggca tcggcagaca
    13081 acgaaaccgt tatgtcggtt attgatggcg acaagccaga tcacgatgat gacactcatc
    13141 ctgacgatga acctccgcag ccaccacgcg gtggtcgacc ggcattacgc gttgtgaagt
    13201 aatacaaaaa caggccctgg tggcctgttt tgtcttttaa tggcttaata aaatagcgtg
    13261 attgtggcaa tcatattcac cacgaaaccg actgccatgg ggatcgctgt tcgcttcacc
    13321 accgcaaaag gcgaaacgcc tgcaattcct gacgtaacga ccaccaccgc agtaatcggc
    13381 gaaaccgcgc gcgctagcgt cgtggcaaaa tgcatcggca taatcattac aaccgctggt
    13441 acatgtagtc cagctgcgat attcggaata agactggcaa atgacataaa cggcgcattg
    13501 ccagagccca tcacaatggc acaaatggca atgaccagcg ccataataat catcacgcca
    13561 ataccgccca gaccagaatg ctccgcaccc ctgataaccg catcgacagt gccaatcgtc
    13621 gttaagcctt tcgcaaatat ttcacccgcg accaccagcg ttaccacgtt ggcaaactgc
    13681 gtacccatgc cgtcaaaaaa cgcctgcaca tcgtccattg tttcgcgcaa gttatgcttg
    13741 cggaagaact caacaaacat cgtcaccgtc aaactcagta acatcaccac caccagatgc
    13801 agttctgact gcatcagccc gacgtgggcg aggaacagcg agccgagcat caggattaac
    13861 ggcatcacag gtaaaatggc gtaatagagc ggcgggacat tatcgagagc tttttgctct
    13921 gcttgttcgt gattgatatt tttatctttt ttgtcaaaag cgcgttgcac gaaaaagtgg
    13981 gagatcgcca ccgagataat gacgcaagag gcgaccggaa gctggtagtg gaagaagtaa
    14041 gtggcaattt tcattcccgc gacctgggct gcaaaaatgg agttcgtttc cagaattccc
    14101 cactcaatgg acattgtggt tgcgataacc gccaccgcag agagacgact tactcccaga
    14161 ctcaccagtg tcggaaataa ggtgaccatc agcaacatac ccagaccgga ggcgctggta
    14221 ataaactgcg ccatgatttg accgatgacg taagttgccg acagaataat atacggtgag
    14281 cgaatgagtt ttaacgggcg gcttaacaag ctcaccatcg cgcgactggc ccctatgcgc
    14341 tccatgtagc gggcataccg cccaccgcca taatcgatag ccccaatccg gcaatgcggt
    14401 tggacagcat gcgcaggatt tcattataaa tatcgacgat caagtagccg ctgcttttgg
    14461 cgggctcgag tacaccaccg aaccctaacc agacaccgca catcatcagg aagatacctg
    14521 cggcagccag caccacctga ggtttgtagt ttttcaggat caaatagccc atcgtaatta
    14581 atacgatgac agatataatt atgccgaaca ttgttgaact ccgtgtcaaa agaaaacggt
    14641 caatcccata aacggcagat tgaaaacaat gatgttatat tttttgcaag tctatttatg
    14701 gtgcggatgt cgtgttttta attgtaggtg agataatttt tcattaaaaa atatgcgctt
    14761 atgattattt tgcaagaacg cattcataat attcataatg ctcgtgaata gtcttataaa
    14821 taattcaaac gggatgtttt tatctgcgtt acattaattt ttcgcaatag ttaattattc
    14881 cgttaattat ggtaatgatg aggcacaaag agaaaaacct gccattttcc cctactttca
    14941 atcctgtgat aggatgtcac tgatgatgtt aatcacactg accttacaga atgggcctta
    15001 tgaacgcatt tgattcgcaa accgaagatt cttcacctgc aattggtcgc aacttgcgta
    15061 gccgcccgct ggcgcgtaaa aaactctccg aaatggtgga agaagagctg gaacagatga
    15121 tccgccgtcg tgaatttggc gaaggtgaac aattaccgtc tgaacgcgaa ctgatggcgt
    15181 tctttaacgt cgggcgtcct tcggtgcgtg aagcgctggc agcgttaaaa cgcaaaggtc
    15241 tggtgcaaat aaacaacggc gaacgcgctc gcgtctcgcg tccttctgcg gacactatca
    15301 tcggtgagct ttccggcatg gcgaaagatt tcctttctca tcccggtggg attgcccatt
    15361 tcgaacaatt acgtctgttc tttgaatcca gtctggtgcg ctatgcggct gaacatgcca
    15421 ccgatgagca aatcgatttg ctggcaaaag cactggaaat caacagtcag tcgctggata
    15481 acaacgcggc attcattcgt tcagacgttg atttccaccg cgtgctggcg gagatccccg
    15541 gtaacccaat cttcatggcg atccacgttg ccctgctcga ctggcttatt gccgcacgcc
    15601 caacggttac cgatcaggca ctgcacgaac ataacaacgt tagttatcaa cagcatattg
    15661 cgatcgttga tgcgatccgc cgtcatgatc ctgacgaagc cgatcgtgcg ttgcaatcgc
    15721 atctcaacag cgtctctgct acctggcacg ctttcggtca gaccaccaac aaaaagaaat
    15781 aatgccactt tagtgaagca gatcgcatta taagctttct gtatggggtg ttgcttaatt
    15841 gatctggtat aacaggtata aaggtatatc gtttatcaga caagcatcac ttcagaggta
    15901 tttatggcaa cgaatttacg tggcgtaatg gctgcactcc tgactccttt tgaccaacaa
    15961 caagcactgg ataaagcgag tctgcgtcgc ctggttcagt tcaatattca gcagggcatc
    16021 gacggtttat acgtgggtgg ttcgaccggc gaggcctttg tacaaagcct ttccgagcgt
    16081 gaacaggtac tggaaatcgt cgccgaagag gcgaaaggta agattaaact catcgcccac
    16141 gtcggttgcg tcagcaccgc cgaaagccaa caacttgcgg catcggctaa acgttatggc
    16201 ttcgatgccg tctccgccgt cacgccgttc tactatcctt tcagctttga agaacactgc
    16261 gatcactatc gggcaattat tgattcggcg gatggtttgc cgatggtggt gtacaacatt
    16321 ccagccctga gtggggtaaa actgaccctg gatcagatca acacacttgt tacattgcct
    16381 ggcgtaggtg cgctgaaaca gacctctggc gatctctatc agatggagca gatccgtcgt
    16441 gaacatcctg atcttgtgct ctataacggt tacgacgaaa tcttcgcctc tggtctgctg
    16501 gcgggcgctg atggtggtat cggtagtacc tacaacatca tgggctggcg ctatcagggg
    16561 atcgttaagg cgctgaaaga aggcgatatc cagaccgcgc agaaactgca aactgaatgc
    16621 aataaagtca ttgatttact gatcaaaacg ggcgtattcc gcggcctgaa aactgtcctc
    16681 cattatatgg atgtcgtttc tgtgccgctg tgccgcaaac cgtttggacc ggtagatgaa
    16741 aaatatctgc cagaactgaa ggcgctggcc cagcagttga tgcaagagcg cgggtgagtt
    16801 gtttcccctc gctcgcccct accgggtgag gggaaataaa cgcatctgta ccctacaatt
    16861 tttataccaa agcgtgtggg catcgcccac cgcgggagac tcacaatgag tactacaacc
    16921 cagaatatcc cgtggtatcg ccatctcaac cgtgcacaat ggcgcgcatt ttccgctgcc
    16981 tggttgggat atctgcttga cggttttgat ttcgttttaa tcgccctggt actcaccgaa
    17041 gtacagggtg aattcgggct gacgacggtg caggcggcaa gtctgatctc cgcagccttt
    17101 atctctcgct ggttcggcgg cctgatgctc ggcgctatgg gtgaccgcta cgggcgtcgt
    17161 ctggcaatgg tcaccagcat cgttctcttc tcggccggga cgctggcctg cggctttgcg
    17221 ccaggctaca tcaccatgtt tatcgcgcgt ctggtcatcg gcatggggat ggcgggtgaa
    17281 tacggttcca gcgccaccta tgtcattgaa agctggccaa aacatctgcg taacaaagcc
    17341 agtggttttc tgatttcagg cttctctgtg ggggccgtcg ttgcctctca ggtctatagc
    17401 ctggtggttc cggtctgggg ctggcgtgcg ctgttcttta tcggcatttt gcctatcatc
    17461 tttgctctct ggctgcgtaa aaacatcccg gaagcggaag actggaaaga gaagcatgca
    17521 ggtaaagcac cagtacgcac gatggtagat attctctacc gtggtgaaca tcgcattgcc
    17581 aatatcgtaa tgacactggc ggcggctact gcgctgtggt tttgcttcgc cggtaacctg
    17641 caaaatgccg cgatcgtcgc tgttcttggg ctgttatgcg ccgcaatctt tatcagcttt
    17701 atggtgcaaa gtacgggtaa acgctggcca acgggcgtaa tgctgatggt ggtcgtgttg
    17761 tttgctttcc tctactcatg gccgattcag gcgctgctgc caacgtatct gaaaaccgat
    17821 ctggcttata acccgcatac tgtcgccaat gtgctgttct ttagcggctt tggggctgcg
    17881 gtggggtgct gtgtcagcgg cttcctcggt gactggctgg gaacccgcaa agcctacgtt
    17941 tgtagcctgt tggcctcgca gctgttgatt attccggtat ttgcgattgg cggcgcaaac
    18001 gtctgggtgc tcggtctgtt actgttcttc cagcaaatgc ttggacaagg gatcgccggg
    18061 atcttaccga aactgattgg cggttatttc gataccgacc agcgtgcagc gggcctgggc
    18121 tttacctaca acgttggcgc attgggcggc gcactggccc caatcatcgg cgcgttgatc
    18181 gctcaacgtc tggatctggg tactgcgctg gcatcgctat cgttcagtct gacatttgtg
    18241 gtgatcctgc tgattggtct ggatatgcct tcccgcgttc agcgttggct gcgcccggaa
    18301 gcattgcgta ctcatgacgc tatcgacggc aaaccattta gcggtgccgt gccatttggc
    18361 agcgccaaaa acgatttagt caaaaccaaa agttaatcct gttgcccggt ctctgtaccg
    18421 ggcctttcgc taagggaaga tgtatgtcgt tacttgcaca actggatcaa aaaatcgctg
    18481 ctaacggtgg cctgattgtc tcctgccagc cggttccgga cagcccgctc gataaacccg
    18541 aaatcgtcgc tgccatggca ttagcggcag aacaggcggg cgcggttgcc attcgcattg
    18601 aaggtgtggc aaatctgcaa gccacgcgtg cggtggtgag cgtgccgatt attggaattg
    18661 tgaaacgcga tctggaggat tctccggtac gcatcacggc ctatattgaa gatgttgatg
    18721 cgctggcgca ggcgggcgcg gacattatcg ccattgacgg caccgaccgc ccgcgtccgg
    18781 tgcctgttga aacgctgctg gcacgtattc accatcacgg tttactggcg atgaccgact
    18841 gctcaacgcc ggaagacggc ctggcatgcc aaaagctggg agccgaaatt attggcacta
    18901 cgctttctgg ctataccacg cctgaaacgc cagaagagcc ggatctggcg ctggtgaaaa
    18961 cgttgagcga cgccggatgt cgggtgattg ccgaagggcg ttacaacacg cctgctcagg
    19021 cggcagatgc gatgcgccac ggcgcgtggg cggtgacggt cggttctgcc attacgcgtc
    19081 ttgaacacat ttgtcagtgg tacaacacag cgatgaaaaa ggcggtgcta tgaccacgtt
    19141 ggcgattgat atcggcggta ctaaacttgc cgccgcgctg attggcgctg acgggcagat
    19201 ccgcgatcgc cgagaacttc cgacaccagc cagccagact ccgcaggcgt tgcgtgatgc
    19261 cttagccgcg ttagtcgccc cgttgcaagc tcatgcgcag caggttgcca tcgcttcaac
    19321 cggaattatt cgcgacggca gcttgctggc gctgaatccg cataatcttg gtggattgct
    19381 acactttccg ttagtcaaaa cgctggaaca actttccaat ttgccgacca ttgccattaa
    19441 cgacgcgcag gccgcagcat gggcagagta tcaggcgctg gaaggcgata taaccgatat
    19501 ggtgtttatc accgtttcca ctggcgtcgg cggcggtgta gtgagcggcg gtaaactgct
    19561 taccggccct ggcggtctgg cggggcacat cgggcatacg cttgccgatc cacacggccc
    19621 agtctgcggc tgtggacgca caggttgcgt ggaagcgatt gcttctggtc gcggtattgc
    19681 agcggcagcg caaggtgaac tcatgggcgc ggatgcgaga actattttca cacgcgccgg
    19741 gcagggcgac gagcaggcgc agcaactgat tcaccgctcc gcacatgtgc tggcaaggct
    19801 gatcgctgat attaaagcca caactgattg ccagtgcgtg gtggtcggtg gcagcgttgg
    19861 tctggcagaa gggtatctgg cgttggtgga aacgtatctg gcgcaggagc cagcggcatt
    19921 tcatgttgat ttactggcgg cgcactaccg ccacgatgca ggtttacttg gggctgcgct
    19981 gttggcccag ggagaaaaat tatgatgatg ggtgaagtac agtcattacc gtctgctggg
    20041 ttacatcctg cgttacagga cgcgttaacg ctggcattag ctgccagacc gcaagaaaaa
    20101 gcgcctggtc gttacgaatt acagggcgac aatatcttta tgaatgtcat gacgtttaac
    20161 actcaatcgc ccgtcgagaa aaaagcggaa ttgcacgagc aatacattga tatccagctg
    20221 ttattaaacg gtgaggaacg gattctgttt ggcatggcag gcactgcgcg ccagtgtgaa
    20281 gagttccacc atgaggatga ttatcagctt tgcagcacca ttgataacga gcaagccatc
    20341 atcttaaaac cgggaatgtt cgccgtgttt atgccaagtg aaccgcataa accaggatgc
    20401 gttgtcggcg agccgggtga gattaaaaag gtggtggtga aggttaaggc tgatttaatg
    20461 gcttaaattt attagatcag gtgtgacctg acccatcttt ggcacagagc caaacctgaa
    20521 ctgacggacc gctctgtgcc attacctgac gttgtattct tttatgttaa ca
//
LOCUS       DADMJB010000062        20460 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.062, whole genome shotgun sequence.
ACCESSION   DADMJB010000062 DADMJB010000000
VERSION     DADMJB010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20460)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20460)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20460
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.062"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..876
                     /locus_tag="JN078_002029"
     CDS             <1..876
                     /locus_tag="JN078_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001666746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY9041240.1"
                     /translation="DQTSWQLSHTFYNDSFSHKELGVTVGGLNTDTINSAVNGRWDGQ
                     YGNVYATVSDSYDRKNHDHLSAFTGTYSSTLAVSRYGVNLGASGTDDLLGAVLVDVKG
                     FSEQDEESQDLQLEARVAGSRTLQLGQSDSVLFPYPGFQSGFVEVNDSSQGNQQGTTN
                     IINGAGNRELMLLPGKLRYREVSASFNYNYIGRLLLPAAVKKFPIVGLNSAMLLVAED
                     GGFTLEINGSEKELYLLSGQQFLKCPLSVEKKRASIRYSGDVTCSVVTYSQLPELKQP
                     KLRGNVQTAQREVAP"
     gene            873..1238
                     /locus_tag="JN078_002030"
     CDS             873..1238
                     /locus_tag="JN078_002030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein"
                     /protein_id="HAY9041241.1"
                     /translation="MRNRLIAAILGLFGTLTGVQAAPDVTSEITYDLASGRADYYFWK
                     DEASAGNNGYMWYECSYPDLQQTCTANGNISTVQIYLTEQRSGMRWPVKLKGFKTAIV
                     SSDEAPLGCKGGQRASDES"
     gene            1330..1962
                     /locus_tag="JN078_002031"
     CDS             1330..1962
                     /locus_tag="JN078_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708899.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein CblD"
                     /protein_id="HAY9041242.1"
                     /translation="MKNLPIGGVWKGKVKLHSNSPAQDYFANITLNTLDPNHIDVFFP
                     EFAHATPRVQLDLHPTGSVNGSNYAQDLTMLDMCLYDGFNGNAISYEIMLKDEGRPAA
                     GRRDGDFSIYRQGGTSTDEGERIDYRVKMYNPETGGQIDVRNNENMVWNSINLKSVRP
                     VVLPGIRYAVMCVPTPLALAVDKFSVMDKQAGYYMGKLSVIFTPSLPTIN"
     gene            complement(2050..3348)
                     /locus_tag="JN078_002032"
     CDS             complement(2050..3348)
                     /locus_tag="JN078_002032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708898.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9041243.1"
                     /translation="MRKIKGLRWYMIALVTLGTVLGYLTRNTVAAAAPTLMEELNIST
                     QQYSYIIAAYSAAYTVMQPVAGYVLDVLGTKIGYAMFAVLWAVFCGATALAGSRGGLA
                     IARGAVGAAEAAMIPAGLKASSEWFPAKERSIAVGYFNVGSSIGAMIAPPLVVWAIVM
                     HSWQMAFIISGALSFIWAMAWLIFYKHPRDQKHLTDEERDYIINGQEAQHQVSTAKKM
                     SVGQILRNRQFWGIALPRFLAEPAWGTFNAWIPLFMFKVYGFNLKEIAMFAWMPMLFA
                     DLGCILGGYLPPLFQRWFGVNLIVSRKMVVTLGAVLMIGPGMIGLFTNPYVAIMLLCI
                     GGFAHQALSGALITLSSDVFGRNEVATANGLTGMSAWLASTLFSLVVGALADTIGFSP
                     LFAVLAVFDLLGALVIWTVLQNKPAIEVAQESHNDPAPQH"
     gene            3831..5243
                     /gene="uxaC"
                     /locus_tag="JN078_002033"
     CDS             3831..5243
                     /gene="uxaC"
                     /locus_tag="JN078_002033"
                     /EC_number="5.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019077755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronate isomerase"
                     /protein_id="HAY9041244.1"
                     /translation="MTPFMTEDFLLDTEFARRLYHDYAKDQPIFDYHCHLPPQQIAED
                     YRFKNLYDIWLKGDHYKWRAMRTNGVAERLCTGDASDREKFDAWAATVPHTIGNPLYH
                     WTHLELRRPFGITGKLLSPSTADEIWNECNELLAQDNFSARGIMQQMNVKMVGTTDDP
                     IDSLEHHAEIAKDGSFTIKVLPSWRPDTAFNIEQATFNDYMAKLGEVSDTDIRRFADL
                     QTALTKRLDHFAAHGCKVSDHALDVVMFAEANEAELDSILARRLAGETLSEHEVAQFK
                     TAVLVFLGAEYARRGWVQQYHIGALRNNNLRQFKLLGPDVGFDSINDRPMAEELSKLL
                     SKQNEENLLPKTILYCLNPRDNEVLGTMIGNFQGEGMPGKMQFGSGWWFNDQKDGMER
                     QMTQLAQLGLLSRFVGMLTDSRSFLSYTRHEYFRRILCQMIGRWVEAGEAPADINLLG
                     EMVKNICFNNARDYFAIELN"
     gene            5258..6745
                     /locus_tag="JN078_002034"
                     /pseudo
     CDS             5258..6745
                     /locus_tag="JN078_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199350.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="altronate dehydratase"
     gene            6828..7379
                     /locus_tag="JN078_002035"
     CDS             6828..7379
                     /locus_tag="JN078_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgjV family protein"
                     /protein_id="HAY9041245.1"
                     /translation="MTAYWLAQGVGFIAFLIGITTFFNRDDRRFKKQLSVYSAVIGVH
                     FFLLGTYPAGASAILNAIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIG
                     TIVSTRALFRCKGLTMRCVMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFW
                     RMQKRGIDPFKVEKTPPAVDERG"
     gene            complement(7384..8628)
                     /gene="sstT"
                     /locus_tag="JN078_002036"
     CDS             complement(7384..8628)
                     /gene="sstT"
                     /locus_tag="JN078_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HAY9041246.1"
                     /translation="MTTQRSPGLFRRLAHGSLVKQILVGLVLGILLAWISKPAAEAVG
                     LLGTLFVGALKAVAPILVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALAAVVF
                     SFAFPSTLHLSSSAGDISPPSGIVEVMRGLVMSMVSNPIDALLKGNYIGILVWAIGLG
                     FALRHGNETTKNLVNDLSNAVTFMVKLVIRFAPIGIFGLVSSTLATTGFSTLWGYAQL
                     LVVLVGCMLLVALVVNPLLVWWKIRRNPFPLVLLCLRESGVYAFFTRSSAANIPVNMA
                     LCEKLNLDRDTYSVSIPLGATINMAGAAITITVLTLAAVNTLGIPVDLPTALLLSVVA
                     SLCACGASGVAGGSLLLIPLACNMFGISNDIAMQVVAVGFIIGVLQDSCETALNSSTD
                     VLFTAAACQAEDDRLANSALRN"
     gene            complement(9244..10209)
                     /gene="alx"
                     /locus_tag="JN078_002037"
     CDS             complement(9244..10209)
                     /gene="alx"
                     /locus_tag="JN078_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001098790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family membrane protein Alx"
                     /protein_id="HAY9041247.1"
                     /translation="MNTVGTPLLWGGFAVVVAIMLAIDLLLQGRRGAHAMTMKQAAAW
                     SLVWVTLSLLFNAAFWWYLVQTEGRAVADPQALAFLTGYLIEKSLAVDNVFVWLMLFS
                     YFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDWILYIFGAFLLFTGVKMAL
                     AHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYATPLMLVLILVELSDVI
                     FAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERFSMLKYGLAVILVFI
                     GIKMLIVDFYHIPIAVSLGVVFGILVMTFIINARVNYRHDKQRGE"
     gene            complement(10493..11497)
                     /locus_tag="JN078_002038"
     CDS             complement(10493..11497)
                     /locus_tag="JN078_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HAY9041248.1"
                     /translation="MEYPRVMIRFAVIGTNWITRQFVEAAHESGKYKLTAVYSRSLEQ
                     AQHFANDFSVEHLFTSLEAMAESDAIDAVYIASPNALHFSQTQLFLSHKIHVICEKPL
                     ASNLAEVDAAIACARENQVVLFEAFKTASLPNFHLLRQALPKVGKLRKVFFNYCQYSS
                     RYQRYLDGENPNTFNPAFSNGSIMDIGFYCLASAVALFGEPKSVQATASLLASGVDAH
                     GVVVMDYGDFSVTLLHSKVSDSVLESEIQGEAGSLVIEKLSECQKVCFVPRGSQMQDL
                     TQPQHINTMLYEAELFATLVDEHLVDHPGLAVSRITAKLLTEIRRQTGVIFPADSVKL
                     "
     gene            complement(11558..12241)
                     /locus_tag="JN078_002039"
     CDS             complement(11558..12241)
                     /locus_tag="JN078_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001183047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vancomycin high temperature exclusion protein"
                     /protein_id="HAY9041249.1"
                     /translation="MQPRLLLRICFSRRTLKIACLLLLVAGATIFIADRVMVNASKQL
                     TWSDVNAVPARNVGLLLGARPGNRYFTRRIDTAAALYHAGKVKWLLVSGDNGRKNYDE
                     ASGMQKALIAKGVPAKVIFCDYAGFSTLDSVVRAKKVFGENHITIISQEFHNQRAIWL
                     AKQYSIDAIGFNAPDLNMKHGFYTQLREKLARVSAVIDAKILHSQPKYLGPSVMIGPF
                     SEHGCPAKE"
     gene            complement(12318..12821)
                     /locus_tag="JN078_002040"
     CDS             complement(12318..12821)
                     /locus_tag="JN078_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311994.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HAY9041250.1"
                     /translation="MSNLTYLQGYPEQLLSQVRTLINEQRLGDVLAKRYPGTHDYATD
                     KALWQYTQDLKNQFLRNAPPINKVMYDNKIHVLKNALGLHTAVSRVQGGKLKAKAEIR
                     VATVFRNAPEPFLRMIVVHELAHLKEKEHNKAFYQLCCHMEPQYHQLEFDTRLWLTQL
                     SLGQDKI"
     gene            12906..14042
                     /gene="rlmG"
                     /locus_tag="JN078_002041"
     CDS             12906..14042
                     /gene="rlmG"
                     /locus_tag="JN078_002041"
                     /EC_number="2.1.1.174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (guanine(1835)-N(2))-methyltransferase
                     RlmG"
                     /protein_id="HAY9041251.1"
                     /translation="MSHLDNGFRSLTLQRFPATDDVNPLQAWEAADEYLLQQLDDTEI
                     RGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDSTAD
                     YPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVLG
                     PTTTTLAWKKARLINCTFNEPPLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGAR
                     FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM
                     PEALDRSEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING
                     ELYIVANRHLDYFHKLKKIFGNCTTIATNNKFVVLKAVKLGRRR"
     gene            14327..14641
                     /locus_tag="JN078_002042"
     CDS             14327..14641
                     /locus_tag="JN078_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HigB family
                     toxin"
                     /protein_id="HAY9041252.1"
                     /translation="MHLITQKALKDAAEKYPQHKTELVALGNMIAKGYFKKPESLKAV
                     FPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKCYIREVMTHKEYDFFTAVHRTKG
                     KK"
     gene            14638..15054
                     /gene="higA"
                     /locus_tag="JN078_002043"
     CDS             14638..15054
                     /gene="higA"
                     /locus_tag="JN078_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin HigA"
                     /protein_id="HAY9041253.1"
                     /translation="MIAIADILQAGEKLTAVVPFLAGIQNEEQYTQALELVDHLLLND
                     PENPLLDLVCAKITAWEESAPEFAEFNAMAQAMPGGIAVIRTLMDQYGLTLADLPEIG
                     SKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID"
     gene            complement(15099..17117)
                     /locus_tag="JN078_002044"
     CDS             complement(15099..17117)
                     /locus_tag="JN078_002044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 2,4-dienoyl-CoA reductase"
                     /protein_id="HAY9041254.1"
                     /translation="MSYPSLFAPLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFY
                     AERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQI
                     LHTGRYSYQPHLVAPSALQAPINRFVPHELTHEEILQLIDDFAHCAQLAREAGYDGVE
                     VMGSEGYLINEFLTLHTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSM
                     LDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKL
                     KGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQSGRADEINT
                     CIGCNQACLDQIFVGKVTSCLVNPRACHETKMPILPAVQKKNLAVVGAGPAGLAFAIN
                     AAARGHQVTLFDAHSESGGQFNIAKQIPGKEEFYETLRYYHRMIEVTGVTLKLNHTVT
                     ADQLQAFDETILASGIVPRVPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGF
                     DTAMYLSQPGESTSQNIARFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKAS
                     KPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVIC
                     AGQEPNRALAQPLIDSGKTVHLIGGCDVAMELNARRAIAQGTRLALEI"
     gene            complement(17343..19695)
                     /gene="ygjK"
                     /locus_tag="JN078_002045"
                     /pseudo
     CDS             complement(17343..19695)
                     /gene="ygjK"
                     /locus_tag="JN078_002045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417551.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
     gene            complement(19712..>20460)
                     /gene="ygjJ"
                     /locus_tag="JN078_002046"
     CDS             complement(19712..>20460)
                     /gene="ygjJ"
                     /locus_tag="JN078_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="protein YgjJ"
                     /protein_id="HAY9041255.1"
                     /translation="PDHSWGGFEGGINRFYGGYRTNDGTEIMLSLRQDSSLDDLQWWG
                     DFTPDLGYVIPNTRDIMTALKVQNLSGNFRYSVTATPAGHHDESKAWLHFGKYDRYDD
                     KYTYPAMMNGYIQYDLAEGITWMNGLEITDGTGQLYLTGLLTPNFAARAWHHTGRADG
                     LDVPGSESGMMVSAMYEALKGVYLSTAYTYAKHRPDHADDETTSFMQFGIWYEYGGGR
                     FATAFDSRFYMKNASHDPSDQIFLMQYFYW"
BASE COUNT         5002 a         5356 c         5362 g         4740 t
ORIGIN      
        1 gatcaaacgt catggcagtt atcgcatacc ttttataatg attcattcag ccataaagaa
       61 cttggcgtaa ccgtcggagg cctgaacacc gataccataa acagcgcggt taacgggcgt
      121 tgggatgggc aatacggaaa tgtctacgct accgtatctg atagttatga ccgtaagaat
      181 catgatcatc tttcggcctt tacgggcact tatagctcta cgctggctgt cagtcgctat
      241 ggcgttaatt tgggagccag tggtacagac gatttgctgg gtgcggtatt ggtggatgtg
      301 aaaggcttct ctgaacagga tgaagagagt caggatctgc aactcgaagc gcgggtggca
      361 ggcagccgaa ctttgcagct tggtcaaagc gacagtgtgt tgttccctta tcctggattt
      421 cagtctggtt ttgttgaggt taacgacagt agccagggca atcagcaggg gacaacaaac
      481 atcattaacg gtgcagggaa tcgtgaatta atgttgttgc ctggcaagct gcgctatcgc
      541 gaagtgtctg ccagctttaa ctacaactat atcggtcgtt tattactgcc ggcagcggtg
      601 aaaaaattcc cgattgtggg gctgaacagc gccatgttac tggtagctga agatggcgga
      661 tttacacttg aaattaacgg cagcgaaaaa gagctctatc tgctttccgg gcagcaattc
      721 cttaagtgtc cactgagtgt tgaaaagaaa cgcgccagca ttcgttacag cggagatgtt
      781 acttgtagtg tggtgactta ttcacaatta ccggagttga aacagcctaa attacgtgga
      841 aacgttcaga cggcgcaaag ggaggttgca ccatgagaaa tcgattgatt gcggcgatat
      901 tgggcttgtt tggcacgctc actggcgttc aggcagctcc tgacgtgacc agtgaaatta
      961 cgtatgattt ggcatctggt agagcggatt attacttctg gaaggatgaa gcgtcggcag
     1021 gaaataatgg atatatgtgg tatgaatgtt cgtatcctga cctccaacaa acctgtacag
     1081 ctaatggaaa tatatcgaca gtacaaatct atttaactga acaacgcagt gggatgcgtt
     1141 ggccggtaaa actcaaagga tttaaaacag ccattgtaag tagcgatgaa gcgccgctag
     1201 gatgcaaggg ggggcaaagg gcttcagacg aatcttaagg attctaatag atcttcatgt
     1261 acagaagatg gtcaacatta ttatatatac gatacaaagt ttcttacgct ctaccttgag
     1321 cagacagaga tgaagaattt gccgattggt ggcgtctgga aggggaaagt taaattacat
     1381 tcgaacagcc cggcccagga ctatttcgca aatattaccc tgaatacgct cgaccccaac
     1441 catattgacg tgttcttccc ggagttcgcc cacgccacgc cgagggtgca gttagacttg
     1501 catccaacag gaagcgttaa cggcagcaac tacgcgcaag atctgaccat gttggacatg
     1561 tgcctgtacg atggttttaa cggtaatgcc atcagttatg aaatcatgct caaagatgaa
     1621 gggcgaccag ctgcagggcg cagagacggt gacttctcta tctatcgtca gggaggaacc
     1681 tctaccgacg agggagaacg cattgattac cgggtcaaaa tgtacaaccc ggaaaccggt
     1741 gggcaaattg atgtgcgcaa taatgaaaat atggtctgga acagcattaa cctgaaaagt
     1801 gtgcgtccgg tggtactgcc cggtattcgc tatgccgtga tgtgtgtgcc gacacccttg
     1861 gctctggcag tcgataaatt cagcgtgatg gataaacagg ccgggtacta catgggcaaa
     1921 ttgtcagtaa tctttacgcc ttccttgcca accatcaatt aaccctgcaa agcggacaaa
     1981 cgcttttttc tatataaacg acgaagccgc ctgataaggc ggcttcgtcg ttataactta
     2041 cgttaaacgt taatgttgcg gtgcgggatc gttatgtgat tcctgcgcta cctcaatcgc
     2101 cggtttgttc tgcaacacgg tccagataac cagcgcacct aacaggtcga acactgccag
     2161 tactgcgaac agcgggctga agccgatggt gtcagccagt gcaccgacaa ccagcgaaaa
     2221 cagcgtactt gccagccatg cggacatccc ggttaaaccg ttcgccgtcg ccacttcgtt
     2281 acgaccgaac acgtcagaag agagcgtaat cagcgcgcca gacagtgcct ggtgagcaaa
     2341 accaccgata cacagcagca taattgcgac atacgggttg gtgaacaggc cgatcatacc
     2401 cgggccaatc atcagcactg cacccagcgt tacgaccatc ttacgggaaa cgatcaggtt
     2461 cacaccaaac caacgctgga acagcggcgg caggtaacca ccgaggatac aaccgaggtc
     2521 agcaaacagc atcggcatcc aggcgaacat cgcgatctct ttcaggttaa agccgtaaac
     2581 tttaaacatg aacagcggga tccacgcgtt aaaagtaccc caggctggtt ctgccaggaa
     2641 acgcggcagc gcgatacccc agaactgacg gttacgcagg atctgaccaa cggacatttt
     2701 cttcgccgtg ctcacctggt gctgggcttc ctgaccatta ataatatagt cgcgttcttc
     2761 atcggtcaga tgcttctggt cgcgcggatg tttatagaaa atcagccatg ccatcgccca
     2821 gataaagctc aatgcaccgg agatgataaa tgccatctgc cagctgtgca ttacgattgc
     2881 ccataccacc agcggcggcg caatcatcgc accaatcgaa gaacctacgt taaagtaacc
     2941 taccgcgatg gaacgctctt tcgccgggaa ccattcggag ctggctttca gacccgccgg
     3001 gatcatcgct gcttccgcgg caccgactgc accacgagca atcgccaggc cacccctgct
     3061 accagccagc gcggttgcac cacagaatac ggcccacagt acagcaaaca ttgcataacc
     3121 gattttcgta cccagcacat ccagtacata gcccgctacc ggttgcatga ccgtataagc
     3181 agcagaatag gctgcgatga tataggaata ctgttgggtg gagatgttta actcttccat
     3241 cagagttggc gcagctgccg ccacagtgtt acgcgtcagg taaccaagca cggtgccaag
     3301 cgtcaccagt gcgatcatat accaacgtaa ccctttaatt ttacgcatgt aaaacctcat
     3361 cgttttgtta tatccgcagg aagcgcggcc atcatcccgc cagaggctga agatgttagt
     3421 tacgaccggg taaccgaaaa aaaaccggca cgccccgaac gttgccatga aagtttcgtg
     3481 ctaattcggc ttccgtaccg gttaacccga ttcatctaac aaatgaatga atcggcaatt
     3541 tgcattccgt cgacttatga tttgcgacgg cagaaagatg acttgtcata caactttaaa
     3601 aggtgagagc catcataaat gtgcgaatat ttgtagggac attacctgac gacagcgagg
     3661 ccagtactgg cgcggcctgc agcgagattt accactttga gagtaatttt tttaactacg
     3721 tttattgatc taactcacga aaatatcttc ggactctgga aattggtgtg ataactttgt
     3781 cagcatcgca ccataagcaa gctagctcac tcgttgagag gaagacgaaa atgactccgt
     3841 ttatgactga agatttcctg ttagataccg aatttgcccg ccgtctgtat cacgactacg
     3901 caaaagacca gccgattttc gattaccatt gccatttgcc gccgcagcag attgcggaag
     3961 actatcgttt taaaaacctg tatgacatct ggctgaaagg cgatcactac aaatggcgcg
     4021 ctatgcgtac caacggtgtg gccgagcgtc tgtgtaccgg tgatgcgtct gaccgtgaaa
     4081 aatttgacgc ctgggcggcg actgttccgc acactatcgg caacccgtta taccactgga
     4141 cgcacctcga actgcgtcgt ccgtttggta tcactggcaa attgctttct ccgtcaactg
     4201 ccgatgaaat ctggaacgaa tgtaacgaac tgctggcgca ggataacttc tccgcgcgcg
     4261 gcatcatgca gcagatgaac gtgaaaatgg tcggcaccac cgatgacccg atcgattctc
     4321 tggagcatca cgcagagatc gccaaagacg gctctttcac catcaaagtg ctgccgagct
     4381 ggcgtccgga cacagccttc aacatcgaac aggcgacctt taacgactac atggcgaagc
     4441 tgggcgaagt ttccgatacc gacattcgcc gctttgctga cctgcaaact gccttgacca
     4501 aacgtctgga tcacttcgcc gctcacggct gtaaagtgtc tgaccatgcg ctggacgtgg
     4561 tgatgtttgc tgaagcgaac gaagcggaac tggacagcat tctggcgcgc cgtctggctg
     4621 gcgaaaccct gagcgagcac gaagtggcac agttcaaaac tgcggtactg gtgttccttg
     4681 gtgccgaata tgcacgtcgc ggctgggtac agcagtacca cattggcgcg ctgcgtaata
     4741 acaacctgcg tcagttcaaa ctgctggggc cggatgtagg ctttgactcc atcaacgacc
     4801 gtccgatggc agaagagttg tctaagctgc tgagcaagca gaacgaagaa aacctgctgc
     4861 cgaaaaccat tctgtactgc ctgaacccgc gcgataacga agtgttgggc accatgatcg
     4921 gtaacttcca gggcgaaggt atgccgggca aaatgcagtt cggttccggc tggtggttta
     4981 acgatcagaa agacggtatg gaacgtcaga tgacccaact ggcgcagctc ggtttgctga
     5041 gccgctttgt cggtatgctg actgacagcc gtagcttcct gtcatacacc cgtcacgaat
     5101 acttccgccg cattctgtgc cagatgatcg gtcgctgggt ggaagcgggc gaagcaccgg
     5161 cggacatcaa cctgctgggc gagatggtga aaaatatttg ctttaacaat gcgcgtgact
     5221 acttcgccat tgaactgaac taaggtctgg ggttgatatg caatacatca agatccatgc
     5281 gctggataac gtcgcggtcg ctttagcgga tttggctgaa ggcacagaag tcagtgtcga
     5341 taaccagact gttacgctgc gccaggatgt tgctcgtgga cataaatttg cgttaacgga
     5401 tatcgcaaaa ggggccaatg tcatcaaata tggcctgccg attggttatg cattggcgga
     5461 tattgcggcg ggggaacacg tccacgccca caatacgcgc acgaatctga gcgatctgga
     5521 tcagtatcgc tatcaacctg attttcagga tctgcctgcg caagcggcag atcgtgaagt
     5581 gcagatctat cgtcgcgcta acggcgatgt cggggtgcgt aacgagctgt ggatcctgcc
     5641 aaccgtgggc tgtgtcaacg gcatcgcgcg gcagatccag aaccgttttc tgaaagagac
     5701 caacaacgct gaaggtaccg acggcgtgtt cctcttcagc cacacctacg gctgctcaca
     5761 gctgggcgac gatcacatta atacccgcac catgctgcaa aacatggtgc gccacccgaa
     5821 cgcaggcgca gtgctggtga ttggtctggg ctgtgaaaac aactaggttg ccgcattccg
     5881 tgaaacgctg ggcgatatcg atcctgaacg cgttcatttc atgatctgcc aacagcagga
     5941 tgatgagatc gaagccggga tcgagcattt gcatcagctg tataacgtga tgcgcaacga
     6001 taaacgcgag ccaggcaaac tcagcgaact gaagtttggt ctggagtgcg gtggttctga
     6061 cggtctttct ggtattactg ctaacccgat gctggggcgt ttctctgact acgtgattgc
     6121 taacggcggt actaccgtac tgaccgaagt gccggagatg tttggcgcag agcagttgct
     6181 gatggaccat tgccgcgacg aagcaacgtt tgaaaaactg gtcaccatgg tcaacgactt
     6241 taaacagtac tttattgccc atgatcagcc gatctacgaa aacccatcac cggggaacaa
     6301 agcgggcggt atcaccacgc tggaagacaa atcacttggc tgtacccaga aagcgggttc
     6361 cagtgtcgtg gttgacgtgc tgcgttacgg cgagcgtctg aaaacgccag ggctgaactt
     6421 gttaagtgcg ccgggtaacg atgccgtagc gaccagcgcc ctggcgggtg cgggctgcca
     6481 tatggtgctg ttcagtactg gtcgcggcac gccatacggt ggatttgtgc cgacggtgaa
     6541 aatcgccacc aacagtgaac tggcggcgaa gaaaaaacac tggctcgact ttgacgcggg
     6601 tcagctgatc cacggtaaag cgatgccgca gttgctggaa gaatttatcg acatcatcgt
     6661 tgagtttgcc aacggtaaac aaacctgcaa cgagcgtaac gacttccgcg aactggcgat
     6721 cttcaaaagc ggcgtaacgc tataaagtcg aaatgagttg ttaataaaaa acggcgtttc
     6781 ataatgtgaa gcgccgtttg cttttccata cctgataagg atttatcatg accgcgtatt
     6841 ggctggccca gggcgtgggt ttcatcgcct ttctgattgg tatcacaaca tttttcaatc
     6901 gtgacgaccg tcgcttcaaa aagcagcttt cggtctatag cgccgttatt ggcgtacatt
     6961 tttttcttct gggcacctat cccgctggtg ccagtgccat ccttaatgcc attcgtacat
     7021 tgattacctt acgcacgcgc agcttatggg taatggcgat ttttattgtg ctgactggcg
     7081 gaattggcct cgcgaagttc catcatcctg tcgaactatt gccggttatc ggtacgattg
     7141 tcagtaccag ggcgctgttc cgctgtaaag ggctcaccat gcgctgcgtg atgtggtttt
     7201 caacgtgttg ctgggtgatt cacaacttct gggcggggtc gataggcggc acaatgattg
     7261 agggtagttt tctgcttatg aatggcttga atatcattcg tttctggcgg atgcagaaaa
     7321 ggggaattga tccgtttaaa gtagagaaaa cccctcccgc cgtagacgaa aggggttaaa
     7381 caattaatta cgcagggcgc tatttgccag acgatcgtct tccgcctggc aagctgccgc
     7441 agtgaacagc acgtcagttg aagagttcag cgcggtttcg caagagtcct gcaatacgcc
     7501 gatgataaag ccgacggcaa ccacctgcat ggcgatatcg ttcgaaatac cgaacatatt
     7561 acaggccagc gggatcagca gcagagaacc ccccgccacg ccggatgcgc cacaggcaca
     7621 cagagaagcc accacgctca acagcagcgc cgtgggcaga tcgaccggga tacccagcgt
     7681 attaaccgca gccagcgtca acacggtaat ggtgattgct gcgcccgcca tattgatggt
     7741 ggcacccagc ggaatagaaa cggaataggt atcgcgatcc agattcagct tttcacacag
     7801 tgccatattc accggaatgt tcgccgcaga gctgcgggtg aagaaggcat acacgccgct
     7861 ttcgcgcagg cacagcagca ccagcgggaa cgggttacga cgaattttcc accacaccag
     7921 caatgggtta accaccagcg ccaccagtaa catacagcca accagcacga ccagcagttg
     7981 cgcgtagccc cacagtgtgg agaaaccggt ggttgccagg gtagaagaaa ccagaccaaa
     8041 aataccaatc ggtgcgaagc gaatgaccag tttcaccata aaggtgacgg cattcgacag
     8101 atcgttgacc aggtttttgg tggtctcgtt accgtgacgc agtgcgaaac cgaggccaat
     8161 tgcccacacc aggatcccga tgtagttacc tttcagcagc gcgtcgatgg ggttggaaac
     8221 catgctcatt accagcccgc gcatcacttc tacaatgcct gacggtggcg aaatatcacc
     8281 cgcgctactg gataagtgca gggtagaagg gaaggcgaag ctgaaaacga ctgcggccag
     8341 agcagcagag aaggtaccca gcagatagag gaacaaaata gggcggatat tggttttctg
     8401 cccgtgctgg tggttagcaa tagatgccat caccagcatc aacaccagga tgggggcaac
     8461 ggctttcagt gcgccgacga acaaagtacc taacagacca acagcttccg ccgcgggttt
     8521 tgagatccat gccagaagaa tccccagaac aaggccgacc aggatttgtt ttaccaggct
     8581 gccatgagcc agacgccgga atagccccgg tgaacgttgc gtagtcattt ttcgatcctt
     8641 tcattgtgtt gtcgcacatc cctggtgcgt tctgtcgacg catctttcag gatgtaacaa
     8701 agtgtttgca aggtcgagta taaggaaagt tacagcttcg ggaagcgaaa aatgctggat
     8761 tttaaagaga ggtcatattt tgcaacttaa ttgttacatt tgtttgacat aaacagaggg
     8821 aaggactggc tactaaggct gattagataa catatgggca aaactatttg gaatatgaga
     8881 acggttgcgc tcctttaatg tgctatgcca tataaagtca ctggcgcagg gagcgcgcag
     8941 ggggcagcca atcgccgccg ccccctgcac ccccaggctc tggcgaacaa aatcgccgct
     9001 gcgcgattcc ctcagcttat cccttgcggc taccgggtcg ggcgcaaggg aacgtccctg
     9061 taagatgcgc cctcgccgcg catccatgcg cgtcgccccg gcctccaggg aacgcttcgg
     9121 cgattttgac gccaccaaca cccgtgcggt ctttttgtaa agagctacaa gccaattaca
     9181 taattaatag ctcacctttg tctggaatga gttatctcta ggaatggctt aatatacagc
     9241 gaatcattct ccccgctgct tatcatgccg ataattcacc ctggcgttga taataaacgt
     9301 catcaccaga atgccaaaca ccacgcccag cgagacggcg attggaatat ggtagaagtc
     9361 gacaatcagc atcttgatac cgataaacac caggatcacc gccaggccat atttgagcat
     9421 cgagaaacgc tctgctacgc ccgccagcag gaaatacatc gcacgcaggc cgaggatcgc
     9481 aaacaggttt gaggtcagca caatgaacgg gtcagtggtc acggcgaaga tagccggaat
     9541 gctatccacg gcgaaaatca cgtcgctcaa ttccaccaga atcagtacca gcatcagcgg
     9601 tgtggcgtac agcaatccat tcttacgcac aaagaaatgc tcgttgtcga tggtgtcggt
     9661 catgcgcaaa tgaccgcgta gccagcgcac cagcggcttg tcgccaatgc ctgattcatc
     9721 ttcatgggcg agcgccatct tcacgccggt aaacagcagg aaggcaccga agatatacag
     9781 gatccagtcg aactgcgaaa ttagccagct gccagtgaag atcatgatgg tacgcagaac
     9841 aatcgccccg agcacgccat acaccagcac gcggcgttgt aatgccgccg gaacagagaa
     9901 atagctgaac aacatcagcc agacaaagac gttatcgacc gccagcgatt tctcaatcag
     9961 ataacccgtg agaaaggcca gtgcctgtgg atcggcaacg gcgcgacctt cggtttgcac
    10021 cagataccac cagaaagcgg cgttaaacag taacgacagc gtcacccaaa ccagcgacca
    10081 ggccgcagcc tgtttcatgg tcatggcatg tgccccacga cgcccctgca acaacaggtc
    10141 gatagccagc ataatggcga caacaacagc gaatccgccc catagcaacg gcgtgccgac
    10201 agtattcata gaagttcctt acacataaaa aaaacggcca acgtcggaag acgtcagccg
    10261 ctgcttttta tgcatagacc tcgccttccg gcaaggtctc acttacaaca aaaaaggaat
    10321 acgtctgcgt attcctttcg ggttgcccgg tgaccggatg tggtttttca cacatcgtaa
    10381 tgacgatcga ccggcaatga agttactccc ctttgcaggt aacaaagtat gacagaccat
    10441 tcagccagtc aatggtctgt tacatacctt ttacactgtt ttactttggc aattatagtt
    10501 ttacgctatc tgccggaaaa atcaccccag tctggcggcg gatctcagtc agcagtttgg
    10561 cggtgatgcg actgaccgcc agccctggat gatccaccag atgctcatcc accagggtag
    10621 caaacagctc tgcttcgtag agcatggtat taatatgctg cggctgggtg agatcctgca
    10681 tctggctgcc acgcggcacg aagcacactt tctggcattc agacagtttt tcaatcacca
    10741 gcgatcccgc ttcgccctga atctcgcttt ccaggacaga atcactgacc tttgagtgca
    10801 gcaacgtaac gctgaaatca ccgtaatcca tcaccaccac gccgtgggca tctacgccgc
    10861 ttgccaacaa actggcggtt gcctgcacgc ttttcggttc accgaataat gccaccgccg
    10921 acgccaggca gtaaaagccg atatccataa ttgaaccgtt agagaatgcc ggattaaagg
    10981 tgttgggatt ctcaccatcc aggtaacgtt gataccgcga ggaatactgg caatagttga
    11041 aaaagacttt acgcaatttg ccgactttcg gcagcgcctg gcgcagcaaa tgaaagttcg
    11101 gcaggctggc ggttttaaat gcctcaaaca gcaccacctg attttcccgc gcacaggcaa
    11161 tggcggcatc cacttccgcc agattcgacg ccagtggttt ctcgcaaatc acatgaattt
    11221 tatggctaag gaaaagttgt gtctgggaaa agtgcagggc attcgggctg gcaatataca
    11281 ccgcgtcaat ggcatcgctt tccgccatcg cttccagcga ggtaaacaga tgctcgacag
    11341 aaaaatcatt ggcgaagtgc tgggcctgtt caaggctgcg ggaatatacg gcggttaact
    11401 tgtatttacc gctctcatgg gcggcctcga cgaactggcg agtgatccag ttcgtaccaa
    11461 tcacagcgaa acgtatcata acgcgtggat actccataaa gggattctgt cgtcaatgta
    11521 gcacgccttt ttcatcttcg acgtgcgcag atacgcatta ttcttttgcc ggacagccat
    11581 gctcactaaa cggcccaatc atgaccgatg gcccgagata tttcggctgg ctatggagga
    11641 ttttggcgtc aatcacggcg ctgacacgag cgagtttctc tcgcagttga gtataaaaac
    11701 cgtgcttcat attgaggtca ggcgcgttaa aaccgatagc gtcgatgctg tactgttttg
    11761 ccagccagat ggcgcgttgg ttatgaaatt cttgcgagat aatggtgata tggttttcac
    11821 caaaaacctt tttggcacgc actaccgaat ccagcgttga gaatccggca tagtcgcaga
    11881 agatcacttt cgccggtacg cctttagcga tcaaagcctt ctgcatacct gatgcttcat
    11941 cgtaattttt acgtccgtta tcgccactta ccagtagcca tttcactttt ccggcgtggt
    12001 acaacgctgc tgcggtatca atacgtcggg taaagtagcg attacccggc ctggccccca
    12061 gcaataagcc cacgttacgc gccggaactg cgttgacatc gctccaggtc agctgcttgc
    12121 tggcgttgac cattactcga tcggcgataa aaatggtcgc tcctgccaca agtaacagta
    12181 agcaggcaat ctttagagtc cggcgagaaa aacaaatacg gagaagaagg cggggctgca
    12241 tggtcgttat ccttaacgaa aggggggagg tcgattttag gcgctaaaga aagaaaagat
    12301 aacgcctgac atcattttca gattttgtcc tgcccaagcg acaactgcgt tagccacagc
    12361 cgggtgtcga actccagctg gtggtactgc ggctccatat ggcagcacaa ctggtaaaac
    12421 gctttgttat gctctttctc cttcaggtgc gccagttcgt gcaccacgat catacgtaaa
    12481 aacggttccg gcgcgttgcg aaacacagta gcgacgcgga tctctgcttt tgctttcagc
    12541 ttgccgccct gcacacgaga aacagcggta tgtaacccga gcgcgttttt tagcacatgg
    12601 atcttattgt catacatcac tttattgatc ggcggggcat tgcgcagaaa ctgatttttt
    12661 agatcctgag tatattgcca gagggcttta tcggtggcgt agtcgtgtgt tcccggatag
    12721 cgttttgcca gcacatcgcc cagacgctgt tcgttaatca gcgttcgcac ctgggaaagt
    12781 agctgctcgg gataaccctg aagataagta agattgctca taaccgccca cgaaaaagag
    12841 aaaaagggta tactcacgca cccttttcag gggcaacgtc gaaattttat cattcaggag
    12901 ggccgatgag ccacttagac aacggtttcc gttcactgac actacaacgt tttccggcga
    12961 cggatgacgt taacccgcta caggcgtggg aagcggcgga tgaatatttg ctgcaacagt
    13021 tggacgacac agaaatccgc ggcccggtgt tgatcctgaa tgatgccttt ggtgcgttaa
    13081 gctgcgcgct ggcggaacat aagccgtaca gcattggcga ctcatacatc agtgaactgg
    13141 cgacgcgcga gaatttacgc ctcaacggga ttgatgagtc gagcgtgaag tttctcgaca
    13201 gcaccgccga ctacccgcaa cagccgggtg tggtgctgat caaagtgccg aaaacactgg
    13261 cattgctgga acaacaactg cgtgcgctgc gcaaagtggt cacgtcggat acacgtatta
    13321 ttgccggtgc caaagcccgt gacattcaca cttccacgct ggaactgttc gaaaaagtgc
    13381 tcggcccgac caccaccacg ctggcatgga aaaaagcgcg cctgattaat tgcacgttca
    13441 atgaaccgcc gctggccgat gcgccgcaga ccgttagctg gaagctggaa ggtactgact
    13501 ggactatcca taaccatgcg aatgtcttct cccgcaccgg gcttgatatc ggcgcgcgct
    13561 tctttatgca acatctgcca gagaatctcg aaggggagat tgtcgatctc ggttgcggta
    13621 atggcgttat tggtctgacg ctgcttgata aaaatccgca ggcgaaagtg gtgtttgtcg
    13681 atgaatcgcc gatggcggtt gcttccagcc gtttgaacgt tgaaaccaac atgccagagg
    13741 cgttggatcg cagcgagttt atgatcaaca acgcgctctc cggcgtggag cctttccgct
    13801 ttaatgctgt gctctgcaac ccgccgtttc accaacaaca tgcgctgacc gataacgtcg
    13861 cctgggagat gttccaccat gcccgccgct gcctgaaaat caacggcgag ctgtatattg
    13921 ttgccaaccg tcacctggat tacttccata aactgaagaa gattttcggc aactgcacca
    13981 ccatcgccac gaataataaa tttgtggtgc tgaaagcagt gaagctgggg cgtcgtcggt
    14041 aagattggga gttacctgcc ggatgcggcg ttaacgcctt atccggccta cgttcagcac
    14101 gttactccca ggccggataa gacgcggcaa gcgtcgcatc cggcaatgtc tgcccagttc
    14161 tggaatcgcg cttccataaa acaaaaaatc cctctcacca tcctctacat tctcttgttt
    14221 agcgtttttc tacgtttatt cttccgtcac acagataaat tcatccgttg ccaatctgtc
    14281 aacggatgtt atcatattgc caatttgtca acggacgtga tgaagaatgc acctgataac
    14341 tcaaaaagca ttgaaagatg ctgcggaaaa atacccgcaa cataaaacgg agttggtggc
    14401 tctggggaac atgattgcta agggatattt caaaaaacct gagtcattaa aagcagtatt
    14461 cccatctctg gataacttca aatatctgga taagcattat gttttcaatg ttgggggcaa
    14521 tgaattacgt gttgtagcaa tggtcttttt tgaatcgcaa aagtgctaca tacgtgaagt
    14581 tatgacgcat aaagaatacg atttctttac cgctgttcat cgtactaagg ggaaaaaatg
    14641 attgcgattg ccgacatctt gcaagcagga gaaaagctaa ctgcggtggt accttttctg
    14701 gcgggtattc agaacgagga acaatacacc caggcgctgg aactggtaga tcatctgctg
    14761 ctcaacgatc ctgaaaaccc cttgctggat ctggtgtgtg ccaaaataac cgcgtgggaa
    14821 gaatcagcgc ccgaatttgc ggaatttaat gccatggctc aagccatgcc tggcggtata
    14881 gccgtgattc gtacccttat ggatcaatat ggtttaaccc ttgccgatct gccggaaatt
    14941 ggcagtaaat ctatggtgtc acgcgttttg agcgggaaga ggaaattaac gctggaacac
    15001 gctaaaaaat tggcaacgcg attcggcatt tctcccgcct tgtttattga ttaacgcgac
    15061 gtgccggatg cgttgcatcc ggcgcttcaa ataacgattt aaatctccag cgccagccgt
    15121 gttccctggg caattgcccg tcgtgcgttc agctccatag ccacatcgca gccgccaatt
    15181 aaatgcacag ttttcccgct atcaatcagc ggttgcgcca gcgcgcggtt tggctcttgc
    15241 cctgcgcaga tcaccacatt gtccacagct aatacctgcg tttcgccgtt gatcaccaca
    15301 tgcagcccgt catcgtcaat cttctgataa cttacgcctg ggatcatttt cacaccccgc
    15361 gagagcaggg tggtgcgatg gatccagccg gtggttttgc ctaacccctg tcccggtttg
    15421 ctggctttgc gctggagcat cacaatttgc cgtgggctac gcgggatctg cattccctgc
    15481 gggcttaagc caccagcctg ttgtaggctg ctgtcgatcc cccactcatt acagaacctg
    15541 gcgatattct ggctggtgga ttcgcccggc tgacttaaat acatcgccgt atcaaaacca
    15601 atcccgccac aaccgatgat ggcaaccttg ttgcctaccg gcgctttgtc gcgcagtaca
    15661 tcgagataac tcaatacctt cggatgatcg atcccgtcga taggcggaac gcgcggcacg
    15721 atcccactgg cgaggatcgt ttcatcgaac gcctgtaact gatccgccgt cacggtgtga
    15781 ttgagtttca gcgtcacgcc cgtcacttcg atcatccggt ggtaatagcg cagcgtttcg
    15841 taaaactcct ctttgccggg gatctgtttg gcgatattaa actgcccgcc gctctcgctg
    15901 tgggcatcaa acaatgttac ctgatgccca cgcgccgccg cgttaatggc aaacgccagc
    15961 ccagcaggtc ccgcaccgac caccgccaga ttttttttct gcacggcagg aaggattggc
    16021 attttggttt cgtggcaggc gcgaggattc accaggcacg aggtgacttt gccaacgaag
    16081 atctgatcga ggcaggcctg attgcagcca atgcaggtgt tgatctcatc ggctcgcccc
    16141 gattgcgctt ttgacagcag ttccgcatca gcaagaaacg gtcgtgccat cgataccata
    16201 tcggcatcgc cgcgcgagag aatatcgtcg gcaacctgcg gatcgttaat ccggttggtg
    16261 gttaccagcg gcagcgagac gtggcctttc agtttgcgcg tgacccagct aaatgcgccg
    16321 cgcggcacgg gcgtggcaat ggtcggaata cgtgcttcat gccagccaat gccggtgttg
    16381 ataatggtcg cgcccgccgc ttcaatggcc tgcgccagct ctaccgtttc ggcaaaagtc
    16441 ccgccgtctt cgaccaggtc gagcatcgac agtcggtaga taataatgaa gtcgttgccg
    16501 acgcgttcgc gcaccgcacg cactacttct acggcaaatc gcatccggtt gcggtaatcg
    16561 ccgccccact ggtcactacg ctgattggtg tgcagcgtca gaaattcgtt gatcaaatac
    16621 ccttcggacc ccattacctc tacaccgtcg tatcctgcct cccgtgccag ttgcgcgcag
    16681 tgggcgaaat cgtcgatcag ttgcaggatc tcttcatggg tgagttcgtg aggaacgaaa
    16741 cggttgatgg gggcctgcaa tgcggaggga gcgaccagat gcggttggta gctgtagcgc
    16801 ccggtatgca aaatttgcag ggctattttg ccgccttcct gatgtaccgc ttcggtaatg
    16861 gtgcgatggt gtgggatctg gctggcgtcg ttgagcattg cgccaccttc catgccaacg
    16921 cctgttaaat ctggtgcaat gccgccgctg acaatcagcg ccacgccgtg acgggcgcgt
    16981 tcggcataaa acgctgccag ccgctcggca ccgtccgggt attcctccag cccggtgtgc
    17041 attgagccca tcaacacgcg gttttttaac gtggtaaaac ctaaatccag cggggcgaac
    17101 agcgacgggt agctcataaa attgtccagt atgtaaaata attgttatgt ggtcggatga
    17161 gttctaattt agccgtcgcc ggagaaaagg gaaaagggga gtgcggggtt tgtgatggga
    17221 ttcaaaaaga atacgcccgg tggtaacgcc ggatgcgacg cttgccgtgt tttatccggc
    17281 caggaggatt gcacatgtag ggcggataag gcgtttacgc cgcatccgcc agcagttgca
    17341 aattattgct tacggaaaaa atcgttatac aacatataca aatgcgcggc actccaggag
    17401 aaatttggtg cagccttgct gcgcgccagt cagcgggttg taattctcct gaattgggcc
    17461 atcggcggtt aatcctttgg cgtgccggaa gaacgtatcc gccagcttca gggcatcatc
    17521 acgataaccg taacgctcca tccctttcag agcaaaccag aactgatcca cccatacgcg
    17581 cccgcgccag tagatatcag cgccaaaagc cggattggtt aacgccgccg ttcccagcgg
    17641 gacaaaggtg ttgaactctt taggatcgag catcaccttc accaccgcgt cggcattggc
    17701 ctgcgttgcc gcaccgttaa acagcggcga ccagccttcc ggccctttac cgcgctcaac
    17761 aatcggtttg cccgcgcagc cgttcgccag tggtttatct tcaatacgta cgtcatagta
    17821 gaactgggta gtcgggtcga acatacaggt gttgatgtag tccgcgagct gctgtgccaa
    17881 ctggcgatag cgtttggcct cttctggctt accgaggatg gttgccatct ccgccagata
    17941 atggttatcg ctgtacatat agctggcctg atccaccgac tcctgcaata gcgagtagcc
    18001 cagcaacgtt ccgtcctgac tgcggttttc ggcgaatttc accgtccagt cgctacgttt
    18061 gccaccatta gcgacatatt tatccaactg ttctttgtcg ataaaaccaa agacggcggc
    18121 atcatcacgc cccgattccc acgacgcagc gacctgtgcc ggaatttcca gactgtcgta
    18181 ctggcctttc tccaccacgc gggcgtagtt gttcagccca gactgcgtct cttctttgtt
    18241 gcctttcttc accgcaaaca gcatctcgcc gctctcagtg ttgtgggctt tgtcgcgggt
    18301 cgcgccatat tccggcacgc cgttgccgtt gtgatcgcgg ttacgtaacc accagtcgtg
    18361 ataggcgacc agtttcgggt acatctctgc caaccaggct ttatcctggg tgacgttgta
    18421 cacttctatc accgaccagg cggcaaggct gggtttggta ttacgttcgt tccagttgcc
    18481 gccatcgcca ccacgctcgg ggctaaggtt ccacgctatc aggtcgggga caaagcccac
    18541 atcctgcgga cgcacgcggt cgccaggctg gatctgccag gagaagaccg cgcggatatt
    18601 ctctttggcg atgtccggat tgaaatgcgc catcgcaaac gcctgcttct aggtatccca
    18661 cggccaggtc tgattgccgg agaaccagcg cccggtcacc gacggtgtaa cggtgttaaa
    18721 tttcaccgca ccgcccggtg agcgccagtt accgttgagc gtttcgatcg ctttcaccgc
    18781 gacgcgcgtc tgttccggcg tcgcatccgg attggttaac cctttcttca ggtattcttc
    18841 ccagcgttgc tgcgaggcgg tgagataaaa cgccggacgc gccagaatat cgcggatctg
    18901 catttgctct ttgctaactt cctgagcggt cagcagatgg gaataggtgg tgtagagcgt
    18961 ggtcgaaccg ttgatatgcg ccttactggt aaagcgatta ccgttgattt cagtctgcac
    19021 cggcagggat ttatgcacct gatattccga ttcgccggag gtcagcagat cccaggtggc
    19081 gcgcactttg ccaaaggtga ctttcaggcc atcacgggtg gcgctgattt tgcgctgata
    19141 gtcagggtat tcgccagcaa tggttttatc ggaaagcggt ttcccttctt tcgcttccag
    19201 tttttccagc agttcgccgt cccacaccag atccagcggt ttattgctgg tgattttggt
    19261 ttccagtagt gacgtgcgcg gcgtggcgaa gcgcagagtc atttcgactt gcacatcttt
    19321 tgctgtcagt ttttgcacca gcgcaccggg aatactgtat gcctccagcg taaagtcgac
    19381 tttcttgccg tcctgccaga cggtcaggcg gtcgaaattg ctggccataa agttgatgta
    19441 ctcttccgtc agcagcgcaa cgcccggaaa gccgcccatg gtgttagggc cgtctggcaa
    19501 cagatgacca tgccaggctc cgagatcgaa aaacggatta aaacgctggt gatcgtcgta
    19561 atcgtaatcc ttcatgtact gcggcgcgcc agtacggtta atcacgtttt tataattgtc
    19621 ggcgttagcg gcatgggcgg aaaaacttat cagcagagcg caggttactg gcgttaaaat
    19681 agtttttatt ttcatgaaat tacagtcctt attaccagta gaaatattgc atcaggaaga
    19741 tttggtcgct gggatcgtga gaggcatttt tcatgtagaa gcggctatca aaagccgtgg
    19801 cgaaacgtcc gccgccgtat tcgtaccaga taccaaactg catgaaagag gtggtttcat
    19861 cgtcagcgtg gtcagggcga tgtttggcgt aggtgtaagc ggtggagaga taaacgccct
    19921 ttaacgcttc atacatggcg ctcaccatca tcccactttc acttcccggt acgtccagcc
    19981 cgtcggcgcg tccggtatgg tgccaggcgc gagcggcaaa gttaggagtt agcaggcccg
    20041 tgagatagag ctgtcctgtg ccgtcggtga tttccagacc gttcatccag gtgatgcctt
    20101 cggcaaggtc atactggatg taaccgttca tcattgccgg ataggtgtat ttgtcgtcat
    20161 agcgatcgta tttgccaaaa tgtagccagg ctttgctttc atcatgatgt ccggcaggag
    20221 tcgcggtgac gctataacga aagttgccgc ttaagttctg taccttcagc gcagtcataa
    20281 tgtcgcgggt attgggaatg acgtagccca gatcgggggt gaaatcgccc caccattgca
    20341 ggtcatccag cgaggaatcc tgacgcagac tgagcatgat ttcggtgcca tcattggtac
    20401 gataaccgcc atagaaacgg ttaattccgc cctcgaaacc accccagcta tggtctggca
//
LOCUS       DADMJB010000063        20406 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.063, whole genome shotgun sequence.
ACCESSION   DADMJB010000063 DADMJB010000000
VERSION     DADMJB010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20406
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.063"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            127..942
                     /locus_tag="JN078_002047"
     CDS             127..942
                     /locus_tag="JN078_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HAY9041256.1"
                     /translation="MAQINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKA
                     DKKKSTATTKKTQKTAKKAASKSTTKSKTASSVKKSSITASKNAKTRSKHAVNKTASA
                     SFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGG
                     SSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQG
                     RGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR"
     gene            1070..1651
                     /gene="sodB"
                     /locus_tag="JN078_002048"
     CDS             1070..1651
                     /gene="sodB"
                     /locus_tag="JN078_002048"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020079002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HAY9041257.1"
                     /translation="MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIK
                     GTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFG
                     SFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWE
                     HAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA"
     gene            complement(1797..2972)
                     /locus_tag="JN078_002049"
     CDS             complement(1797..2972)
                     /locus_tag="JN078_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9041258.1"
                     /translation="MKINYPLLALALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAA
                     GMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSR
                     ILTSLNHGAFFGLGSVVAASVEPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGW
                     RMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGA
                     MFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYPGGKLADRSVNGTLKGFLL
                     LLMVIMLAIPFLARNEFGAAISMVVWGAAAFAVVPPLQMRVMRVASEAPGLSSSVNIG
                     AFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS"
     gene            complement(3139..3228)
                     /gene="ynhF"
                     /locus_tag="JN078_002050"
     CDS             complement(3139..3228)
                     /gene="ynhF"
                     /locus_tag="JN078_002050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein YnhF"
                     /protein_id="HAY9041259.1"
                     /translation="MSTDLKFSLVTTIIVLGLIVAVGLTAALH"
     gene            3527..4552
                     /gene="purR"
                     /locus_tag="JN078_002051"
     CDS             3527..4552
                     /gene="purR"
                     /locus_tag="JN078_002051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor PurR"
                     /protein_id="HAY9041260.1"
                     /translation="MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELH
                     YSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLE
                     KQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVID
                     NAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQ
                     GDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDN
                     VRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADG
                     PFRDYRR"
     gene            complement(4549..5481)
                     /locus_tag="JN078_002052"
     CDS             complement(4549..5481)
                     /locus_tag="JN078_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY9041261.1"
                     /translation="MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWL
                     AVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIV
                     RPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAF
                     RDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKR
                     VVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQND
                     MSPALTWLLEYLGDSETLNKEWLREPEETPATGD"
     gene            5594..6805
                     /locus_tag="JN078_002053"
     CDS             5594..6805
                     /locus_tag="JN078_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bcr/CflA family multidrug efflux MFS
                     transporter"
                     /protein_id="HAY9041262.1"
                     /translation="MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVS
                     ASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRF
                     VQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQ
                     AIFATLFAITVVLILPIFWLKPTTKAGNNSQDGLTFTDLLRSKTYRGNVLIYAACSAS
                     FFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLV
                     LFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAA
                     LQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEAGCQNH
                     GNAEVAHSESH"
     gene            7096..8244
                     /gene="cfa"
                     /locus_tag="JN078_002054"
     CDS             7096..8244
                     /gene="cfa"
                     /locus_tag="JN078_002054"
                     /EC_number="2.1.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane fatty acyl phospholipid synthase"
                     /protein_id="HAY9041263.1"
                     /translation="MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNP
                     DFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGAR
                     LFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMIC
                     EKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSMVGVTISAEQQKMAQERCEGLDVTIL
                     LQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLN
                     VDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPE
                     IADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR"
     gene            complement(8284..8925)
                     /gene="ribE"
                     /locus_tag="JN078_002055"
     CDS             complement(8284..8925)
                     /gene="ribE"
                     /locus_tag="JN078_002055"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HAY9041264.1"
                     /translation="MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAH
                     NGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGH
                     IMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVH
                     LIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA"
     gene            9140..10513
                     /gene="mdtK"
                     /locus_tag="JN078_002056"
     CDS             9140..10513
                     /gene="mdtK"
                     /locus_tag="JN078_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MATE transporter MdtK"
                     /protein_id="HAY9041265.1"
                     /translation="MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDM
                     AAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLI
                     MLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPG
                     MVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSM
                     RDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQI
                     ALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTV
                     SLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITF
                     TAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSVI
                     ILQRASR"
     gene            complement(10554..11810)
                     /locus_tag="JN078_002057"
     CDS             complement(10554..11810)
                     /locus_tag="JN078_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041266.1"
                     /translation="MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENT
                     VVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRH
                     PEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGE
                     LLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGT
                     DGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRA
                     PVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDGVTFIVGNINL
                     NGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITD
                     ASRQTLCNALKLQPDEDGIGATLQPA"
     gene            12118..12194
                     /locus_tag="JN078_002058"
     tRNA            12118..12194
                     /locus_tag="JN078_002058"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12152..12154,aa:Val,seq:gac)
     gene            12199..12275
                     /locus_tag="JN078_002059"
     tRNA            12199..12275
                     /locus_tag="JN078_002059"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12233..12235,aa:Val,seq:gac)
     gene            12383..12688
                     /locus_tag="JN078_002060"
     CDS             12383..12688
                     /locus_tag="JN078_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monooxygenase"
                     /protein_id="HAY9041267.1"
                     /translation="MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTES
                     EKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA"
     gene            12814..14418
                     /locus_tag="JN078_002061"
     CDS             12814..14418
                     /locus_tag="JN078_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-NAD(P)-binding protein"
                     /protein_id="HAY9041268.1"
                     /translation="MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPY
                     SDEENSKMMLANIASIEIPPINCTYLEWLQKQEASHLQRYGVKKETLHDRQCLPRILL
                     GEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI
                     ATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFI
                     EDDKQHVVFNRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKG
                     EEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFVQAWFAERKQRDPFDWAEKNL
                     QEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPS
                     ESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKV
                     KDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTA
                     CAEIGEAMARAVVKPASRARRRLSFD"
     gene            complement(14430..15242)
                     /locus_tag="JN078_002062"
     CDS             complement(14430..15242)
                     /locus_tag="JN078_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041269.1"
                     /translation="MIITRADLREWRIGAVMYRWFLRHFRRGGSYADIHHALIEEGYT
                     DWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCED
                     NARIAIAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRI
                     ANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTG
                     VVDSIILGSGGSAALAYHDGERVRFAVAIEGENNIRTGVRYRLNEQHQFVEC"
     gene            complement(15246..16031)
                     /locus_tag="JN078_002063"
     CDS             complement(15246..16031)
                     /locus_tag="JN078_002063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate reductase cytochrome B subunit"
                     /protein_id="HAY9041270.1"
                     /translation="MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVL
                     GLHALLRARGVKKSATDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFAMVGAT
                     AVKSLVAVHEVCGFLLLACWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGI
                     MQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYW
                     LLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH"
     gene            complement(16028..16696)
                     /locus_tag="JN078_002064"
     CDS             complement(16028..16696)
                     /locus_tag="JN078_002064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416186.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HAY9041271.1"
                     /translation="MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDES
                     RCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCID
                     VCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLA
                     KGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIK
                     KENV"
     gene            complement(16760..17398)
                     /locus_tag="JN078_002065"
     CDS             complement(16760..17398)
                     /locus_tag="JN078_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707570.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdhW family putative oxidoreductase system
                     protein"
                     /protein_id="HAY9041272.1"
                     /translation="MNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAE
                     FIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYS
                     TQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEA
                     AIAAMDVAPEYADIRQVESSTAELYLFSERFMTYGKAYGLCEWFEVEQFQNP"
     gene            complement(17411..19513)
                     /locus_tag="JN078_002066"
     CDS             complement(17411..19513)
                     /locus_tag="JN078_002066"
                     /EC_number="1.2.7.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016246021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde ferredoxin oxidoreductase"
                     /protein_id="HAY9041273.1"
                     /translation="MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDE
                     VPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQ
                     MKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCV
                     AAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKR
                     LNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPP
                     GNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGN
                     TCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYS
                     KGVFKCVLPAEEYAEIHWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWN
                     LGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPL
                     KLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTV
                     SPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRN
                     EHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGSPTRETLQR
                     LGLEDIAADLAAHNLLPV"
     gene            complement(19483..20160)
                     /locus_tag="JN078_002067"
     CDS             complement(19483..20160)
                     /locus_tag="JN078_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001070231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-like protein"
                     /protein_id="HAY9041274.1"
                     /translation="MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQE
                     DIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFG
                     DNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCS
                     ACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITVRILQRKKSWL
                     TVGQVIY"
BASE COUNT         5110 a         5312 c         4765 g         5219 t
ORIGIN      
        1 tcgccaacga aacgtatttt ttaacaataa aagctattaa ctttctcttc ttctatgcat
       61 tagaatcatc aagttttgta aatcagacgc aggcatgata gacctgcctt aacagaggga
      121 cgctcagtgg cgcagataaa ccgtatttcg atcacgctct gtgctttact ttttaccacc
      181 ctgcctttaa cgcctatggc ccatgcttca aagcaagcca gggagagttc tgctaccact
      241 catatcacca aaaaagcaga taaaaagaaa agcacggcaa ccaccaaaaa gacccagaaa
      301 acagcgaaaa aagccgccag taaaagtacg accaaaagca aaaccgcttc ttccgttaaa
      361 aaatcttcca ttaccgcttc taaaaacgcc aaaactcgca gcaaacacgc cgtcaataaa
      421 acggcctcag ccagctttac cgaaaagtgt accaaacgta agggctataa atcgcattgt
      481 gtgaaagtca aaaatgccgc gtcaggaact cttgccgacg cgcacaaagc gaaggtgcaa
      541 aaagctacga aagtggcaat gaataaactg atgcagcaaa ttggtaagcc atatcgttgg
      601 ggtggcagct caccgcgtac cggttttgat tgcagcggcc tggtttatta cgcttataaa
      661 gatttggtga aaattcgtat tccgcgtacg gcgaatgaaa tgtatcacct gcgtgatgca
      721 gcgccaatcg aacgtagtga actgaaaaac ggcgacctgg tctttttccg tactcaggga
      781 cgcggcacag ccgatcatgt cggcgtgtat gtcggcaacg gcaaatttat tcagtcaccg
      841 cgcacaggtc aggaaattca aatcacttct ctcagtgaag actactggca gcgccactat
      901 gttggcgctc gtcgggtaat gaccccaaaa acacttcgct aaaactttac cctgttgtta
      961 cggcaacagg gtaagttcat cttttgtctc accttttaat ttgctaccct atccatacgc
     1021 acaataaggc tattgtacgt atgcaaatta ataataaagg agagtagcaa tgtcattcga
     1081 attacctgca ctaccatatg ctaaagatgc tctggcaccg cacatttctg cggaaactat
     1141 cgagtatcac tacggcaagc atcatcagac ttatgtcact aacctgaaca acctgattaa
     1201 aggtaccgcg tttgaaggta aatcactgga agagattatt cgcagctctg aaggtggcgt
     1261 attcaacaac gcagctcagg tctggaacca tactttctac tggaactgcc tggcaccgaa
     1321 cgccggtggc gaaccgactg gaaaagtcgc tgaagctatc gccgcatctt ttggcagctt
     1381 tgccgatttc aaagcgcagt ttactgatgc agcgatcaaa aactttggtt ctggctggac
     1441 ctggctggtg aaaaacagcg atggcaaact ggctatcgtt tcaacctcta acgcgggtac
     1501 tccgctgacc accgatgcga ctccgctgct gaccgttgat gtctgggaac acgcttatta
     1561 catcgactat cgcaatgcac gtcctggcta tctggagcac ttctgggcgc tggtgaactg
     1621 ggaattcgta gcgaaaaatc tcgctgcata ataactgatg gcaaatgcag cattgcctga
     1681 tgcgcttcgt ttaccatgcc aacgcggatg aggcgttaac agcgcattcg gcaagataaa
     1741 tcgcacgttg tcagcaactg taacgcagaa ggttatcctt ctgcgttttt gtttaattag
     1801 ctgttagcaa cgcaaactgt ttcaggttgt tttctggctg acataaacac cagcaataat
     1861 gccagtcccg cgacaatcgc tcccatcacc ggcacaaagc tgtatcccag cccagcggaa
     1921 attaccgcac caccagcagc tgctcccagc gcatttccaa gattaaaggc accaatattg
     1981 actgatgaag acagacctgg cgcttcactg gcgacacgca tcacgcgcat ctgtaacggc
     2041 ggtacgaccg caaaggctgc tgcgccccac accaccatgc taatagctgc gccgaactca
     2101 ttgcgggcca ggaacgggat tgccagcata atcaccatca acaacaacaa aaagcctttc
     2161 aacgtgccgt taactgaacg atctgccagt ttgccgccgg gatagttacc gatagagaat
     2221 ccgacaccaa tcagcaccag cattgccgtg acgaacaccg gtgttgcgtg ggtaatactt
     2281 tgcagtaccg gagagatata ggtgtagaga gtaaacattg caccagctcc cagtaccgtc
     2341 gtcagcaatg cagacaacac ctgcggacgc attaataccg ccagctcttt tttcacttca
     2401 ggtcgtgccc ctgcaccacc tttaggtaat gagaagaaca gacttaccat tgaaatcact
     2461 cccagccccg ccgttgccag aaatgacatc cgccagccga tggtttcacc caaccaggtc
     2521 gccgccggca cgccaccgat atttgccagg gttaacccca taaacatagt ggcaactgcg
     2581 ctggcctgtt tatgttttgg ctccacgctt gcggccacga ctgaacccaa accaaaaaat
     2641 gctccgtgat tcaggctggt caaaatgcgt gaaagcatca gggtcatata atccggcgcg
     2701 atggcggaaa gtacgttgcc gagcgtgaaa attgccatca ggaaaatcaa cgcactgcgg
     2761 cgggcacgat gagaaagtag aagcgtcatc agcggcgcgc caaccattac gccaactgca
     2821 taggcactga ttaacattcc ggcagcggga atcgagacat ccacaccgcg cgcaatgacg
     2881 ggcaacaagc ccattggcga gaactccgtt gtcccgatac caaacgcgcc aatcgccagc
     2941 gccagcgcca gcaacggata gttaattttc atgccttact ctccacctct tcgcgtcatt
     3001 acgcgatatt cattaaagtg gcgaaagcat gacagcaatc acaaaaaaat gaaaataaca
     3061 aaaagagaaa acacttttgc cattttgcta acaaacagga aggagatgcg agggagaacg
     3121 cgctccctcg agaggaaatc agtgcagcgc ggcagtcaaa cccacggcca cgatcaaacc
     3181 gaggacgata atcgttgtta ccagtgaaaa tttaaggtcg gtgctcatca agttttctcc
     3241 ttttttatta ccacacaaat agtgatatta cgcattttta cacactgtga tgaaaaaatc
     3301 tcccgtcatt tataatgata agtgttttta ccacttcccc ttttcgtcaa gatcggccaa
     3361 aattccacgc ttacactatt tgcgtactgg ccattgaccc cttcctgacg ctccgtgtcg
     3421 tttttccggc gtaccgcaac acttttgttg tgcgtaaggt gtgtaaaggc aaacgtttac
     3481 cttgcgattt tgcaggagct gaagttaggg tctggagtga aatggaatgg caacaataaa
     3541 agatgtagcg aaacgagcaa acgtttccac tacaactgtg tcacacgtaa tcaacaaaac
     3601 acgtttcgtc gctgaagaaa cgcgcaacgc cgtgtgggca gcgattaaag aattacacta
     3661 ctcccctagc gcggtggcgc gtagcctgaa ggttaaccac accaagtcta tcggtttgct
     3721 ggcgaccagc agcgaagcgg cctattttgc cgagatcatt gaagcggttg aaaaaaattg
     3781 cttccagaaa ggttacaccc tgattctggg taatgcgtgg aacaatcttg agaaacagcg
     3841 ggcttatctg tcgatgatgg cgcaaaaacg cgtcgatggt ctgctggtga tgtgttctga
     3901 gtacccagag ccgttgctgg cgatgctgga agagtatcgc catatcccaa tggtggtgat
     3961 ggactggggt gaagcaaaag ctgacttcac cgatgcggtc attgataacg cgttcgaagg
     4021 cggctacatg gccgggcgtt atctgattga acgcggtcac cgcgaaatcg gcgtcatccc
     4081 cggcccgctg gaacgtaaca ccggcgcagg ccgccttgcc ggttttatga aggcgatgga
     4141 agaagcgatg atcaaggtgc cggaaagctg gattgttcag ggtgactttg aacccgaatc
     4201 tggttatcgc gccatgcagc aaatactgtc gcagccgcat cgccctactg ccgtcttctg
     4261 tggtggcgat atcatggcaa tgggcgcact ttgtgctgct gatgaaatgg gtctgcgcgt
     4321 cccgcaggat gtttcgctga tcggttatga taacgtgcgc aacgcccgct attttacgcc
     4381 ggcgctgacc acgatccacc agccaaaaga ttcgctgggt gaaacagcgt tcaacatgct
     4441 gttggatcgt atcgtcaaca aacgtgaaga accgcagtcc attgaagtgc atccgcgctt
     4501 gattgaacgc cgctccgtgg ctgacggccc gttccgcgac tatcgtcgtt aatcacccgt
     4561 tgcgggagtc tcttccggct cccgcagcca ctccttattc agcgtctcac tatcgccgag
     4621 atactcaagc agccaggtta acgcaggcga catatcattt tgctgccatg tcagacaaca
     4681 tgccgaatcc gggaaggggt tttccaattc aagtgctacc cacttcccct cattaagcca
     4741 cggtttggcg aaatgtgttg gcaccatccc tatgcataat cctgccgaga tacaggttgc
     4801 cgatgattcc cagtcaggca cgacaactct tttttggtta tccagtaacc aggtaatacg
     4861 tttaggtagc gttcgcgagg tgtcttcgcg caccaacgac ggccagttgc gcaacgtatc
     4921 atcgctgaat gggccatcca tcaacgccag cgggtggtgg ctggcaacaa cgcaactcca
     4981 gcttagcatc cccatatccc ggaaggcata acgaccgcct accggaatcg cgcgtgttgc
     5041 gccaatcgcc agttccacgc gcccgtcgga aagcgcatcc cagacaccgt tgaacacttc
     5101 ctgaaagaca agaagttcga catcatcaaa atggcgataa aaatcaacga tcatctgccg
     5161 tgtacgttct ggcctgacaa tattatccac tgcgatagct aactgaccgc gccagccgtt
     5221 cgctatctgc tgacattgct ggcgggtgat ctgcattttt ttgacaacag agcgcccttc
     5281 tttgagaaac cacgctccag cagcggtcag ctccacatca cggtgccgtc gttcaaagag
     5341 cggcaccgcc agccactctt ccagctgacg cacggtatag ctgaccgcag aaggaacgcg
     5401 atgcagctcc tgtgccgcag cgctaaaact accattacgc gctaccgcat caacaacttc
     5461 gagtgaatat tctgaccaca tagtctgcct gcaaaatttt tgaaatcagt catcaaatat
     5521 taccgtttca caacactaat ttcactccct acactttgcg gcggtgttta attgagagat
     5581 ttagagaata tacatgcaac ctgggaaaag atttttagtc tggctggcgg gtttgagcgt
     5641 actcggtttt ctggcaaccg atatgtatct gcctgctttc gccgccatac aggccgacct
     5701 gcaaacgcct gcgtctgctg tcagtgccag ccttagtctg ttccttgccg gttttgccgc
     5761 agcccagctt ctgtgggggc cactctccga ccgttatggt cgtaaaccgg tgttattaat
     5821 cggcctgaca atttttgcgt taggtagtct ggggatgctg tgggtagaaa acgccgctac
     5881 gctgctggta ttgcgttttg tacaggctgt gggtgtctgc gccgcggcgg ttatctggca
     5941 agcgttagtg acggattatt atccttcaca gaaagttaac cgaatttttg cgaccatcat
     6001 gccgctggtg ggtctatctc cggccctggc tcctctgtta ggaagctggc tgctggtcca
     6061 tttttcctgg caggcgattt tcgccaccct gtttgccatt accgtggtgc tgattctgcc
     6121 tattttctgg ctcaaaccca cgacgaaggc cggtaacaat agtcaggatg gtctgacctt
     6181 taccgacctg ctacgttcta aaacctatcg cggcaacgtg ctgatatacg cggcctgttc
     6241 agccagtttt tttgcatggc tgaccggttc accgttcatc cttagtgaaa tgggctacag
     6301 cccggcagtt attggtttaa gttatgtccc gcaaactatc gcgtttctga ttggtggtta
     6361 tggctgtcgc gccgcgctgc agaaatggca aggcaagcag ttattaccgt ggttgctggt
     6421 gctgtttgct gtcagcgtca ttgcgacctg ggctgcgggc ttcattagcc atgtgtcgct
     6481 ggtcgaaatc ctgatcccat tctgtgtgat ggcgattgcc aatggcgcga tctaccctat
     6541 tgttgtcgcc caggcgctgc gtcccttccc acacgcaact ggtcgcgccg cagcgttgca
     6601 gaacactcta caactgggtc tgtgcttcct cgcaagtctg gtagtttcct ggcttattag
     6661 tatcagcacg ccattgctca ccaccaccag cgtgatgtta tcaacagtag tgctggtcgc
     6721 gctgggttac atgatgcaac gttgtgaaga agctggctgc cagaatcatg gcaatgccga
     6781 agtcgctcat agcgaatcac actgatctat atcgatatac ttatacttag gctgctaaca
     6841 aaattttgtt gtatgattga aattagcggc ctatactaat ttcgagttgt taaagctacg
     6901 ataaatatta tgtttttacg gggacaggat cgttcccgac tcactatgga tggtcatttc
     6961 ggcaagggtt cctcctttcc ctctgttcta cgtcggatta tagactcgcg gttttttctg
     7021 cgagatttct cacaaagccc aaaaagcgtc tacgctgttt taaggttctg atcaccgacc
     7081 agtgatggag aaactatgag ttcatcgtgt atagaagaag tcagcgtacc ggatgacaac
     7141 tggtaccgta tcgccaacga attacttagc cgtgccggta tagccattaa cggttctgcc
     7201 ccggcggata ttcgtgtgaa aaaccccgat ttttttaaac gcgttctgca agaaggctct
     7261 ttggggttag gcgaaagtta tatggatggc tggtgggaat gtgaccgact ggatatgttt
     7321 tttagcaaag tcttacgcgc aggtctcgag aaccaactcc cccatcattt caaagacacg
     7381 ctgcgtattg ccggcgctcg tctcttcaat ctgcagagta aaaaacgtgc ctggatagtc
     7441 ggcaaagagc attacgattt gggtaatgac ttgttcagcc gcatgcttga tcccttcatg
     7501 caatattcct gcgcttactg gaaagatgcc gataatctgg aatctgccca gcaggcgaag
     7561 ctcaaaatga tttgtgaaaa attgcagtta aaaccaggga tgcgcgtact ggatattggc
     7621 tgcggctggg gcggactggc acactacatg gcatctaatt atgacgtaag catggtgggc
     7681 gtcaccattt ctgccgaaca gcaaaaaatg gctcaggaac gctgtgaagg cctggatgtc
     7741 accattttgc tgcaagatta tcgtgacctg aacgaccagt ttgatcgtat tgtttctgtg
     7801 gggatgttcg agcacgtcgg accgaaaaat tacgatacct attttgcggt ggtggatcgt
     7861 aatttgaaac cggaaggcat attcctgctc catactatcg gttcgaaaaa aaccgatctg
     7921 aatgttgatc cctggattaa taaatatatt tttccgaacg gttgcctgcc ctctgtacgc
     7981 cagattgctc agtccagcga accccacttt gtgatggaag actggcataa cttcggtgct
     8041 gattacgata ctacgttgat ggcgtggtat gaacgattcc tcgccgcatg gccagaaatt
     8101 gcggataact acagtgaacg ctttaaacgg atgtttacct attatctgaa tgcctgcgca
     8161 ggtgctttcc gcgcccgtga tattcagctc tggcaggtcg tgttctcacg cggtgttgaa
     8221 aacggccttc gagtcgctcg ctaaaggcta ttctatcgcc ccctctccgg gggcgatttc
     8281 agatcaggct tctgtacctg gttgattcat ggcattttct cgtgccgcca gcacacgttc
     8341 taccgtatct accactgcct gagtttgtgg atcaatttca atgttgacgc gtgcgccgag
     8401 ttttttcttc ccaagagtcg tgcgttccag agtttccgga attaaatgga cgcaaaaacg
     8461 cgttggcgtg acttcgccga cggtcaggct aataccgtcg atgccaataa atcctttgta
     8521 caggatatat ttcatcaact gactatcctg gactttaaac cagatctggc gattattttc
     8581 cgaggttaat attttcgcca cttcagcggt ggtcataata tgacctgaca ttaagtgtcc
     8641 gccaatttca tcactgaatt tcgccgcacg ctcaacgttt acccaatccc ccacttttaa
     8701 atcgccaaga ttggtaatgc gtaacgtttc tttcatcagg tcaaaactga catggttgcc
     8761 gttaatttcc gtcacggtca ggcagcaacc gttatgcgcc acggaagcac cggtttccag
     8821 gccgtccagc atgtggtcgg gtaactccac cacatgcgta cgaaaatttg gtttctcgtc
     8881 aatcgacacc agttttgcgg tgccctgtac aatccccgta aacatactta caactcctga
     8941 aatcagttaa gacattctgt tcagcacaat agcaggtggc aaacgccctt accagtgaag
     9001 gggtaagaat gactattttt tcactggaga attaataaat cctcgctaca atagactgaa
     9061 tttcccctgc ttcttctttt tgctgcccat tcaggcggct ttttagtctc tcatataact
     9121 acaaataaaa ggtgttcacg tgcagaagta tatcagtgaa gcgcgtctgt tattagcatt
     9181 agcaatcccg gtgattctcg cgcaaatcgc ccaaactgcg atgggttttg tcgataccgt
     9241 gatggcgggc ggctatagtg ccaccgacat ggcggcggtc gctatcggta cttctatctg
     9301 gcttccggcg atcctctttg gtcacggact gctgctggca ttaacgccgg ttatcgcgca
     9361 attaaatggt tccggtcgac gtgagcgcat tgcgcatcag gtgcgacaag gtttctggct
     9421 ggcaggtttt gtttccgttc tcattatgct ggtgctgtgg aatgcaggtt acattatccg
     9481 ctccatggaa aacatcgatc cggctctggc ggacaaagcc gtgggttatc tgcgtgcgtt
     9541 gttgtggggc gcgccgggct atctgttctt ccaggttgcc cgtaaccaat gtgaaggtct
     9601 ggcaaaaacc aagccgggta tggtaatggg ctttatcggc ctgctggtga acattccggt
     9661 gaactatatc tttatttatg gtcatttcgg tatgcctgag ctcggtggcg ttggttgtgg
     9721 cgtggctact gcggcggtgt attgggtcat gttccttgcc atggtttctt acattaaacg
     9781 cgcccgctcc atgcgcgata ttcgtaacga aaaaggcacc gcgaaacccg atcctgcggt
     9841 tatgaaacga ctgattcaac tcggtttacc gattgcgctg gcactattct ttgaagtgac
     9901 actgtttgcc gtcgtggctc tgttagtgtc tccgctcggt attgttgatg tcgcaggaca
     9961 ccagattgcc ctgaacttta gttcactgat gtttgtgctt ccaatgtcgc tggcggcagc
    10021 ggtaactatc cgcgtaggtt atcgtctggg tcagggctca acgctggatg cgcaaaccgc
    10081 tgcgcggacc gggcttatgg tgggtgtctg tatggcaacc ctgacggcca ttttcacggt
    10141 ttcactccgg gagcaaatcg ccctgttgta caacgacaat cccgaggttg taacgctggc
    10201 tgcgcatttg atgttgctgg cggcggtata tcagatttct gactcaatcc aggtgattgg
    10261 cagtgggatt ttgcgtggtt ataaagatac gcgttccatt ttctatatca cctttacagc
    10321 ttactgggtg ctgggcttgc caagcggcta tattctggca ctgaccgatc tggtcgttga
    10381 acctatgggg ccagcaggct tctggatagg ctttattatc ggcctgacat cggcagccat
    10441 tatgatgatg ttgcgtatgc ggttcctgca acgtctgccg tcagttatca ttctgcaacg
    10501 agcatcccgc taataaagac aaggcgcaac cttcacgggt tgcgcctgtg tttttacgca
    10561 ggctggagcg ttgcgccaat cccgtcttcg tctggctgta atttcagagc gttgcacaga
    10621 gtttgccgac tggcatctgt tatctcaacg tgtatatcac cggtaacttc ccctttcaca
    10681 ttgatgaagt caggtgagat ttctttcgca ctggtttgca ggcaaatcgc tccctctccg
    10741 cgcaggcgtt tcactttcag ttgcacatgc gttgccgcac cagtgatcag ccacagtttt
    10801 ccgccattca gattgatgtt accaacaata aaagtgacac cgtcaccttt taccgtactg
    10861 ccgtcgagaa tcaacacacc gccctgctgt acagtaatcg ttgattgttg cagatctgcg
    10921 ccatagccaa taatcattga agcgccgtcc agtaatgcaa cactcccggt cagttcaacc
    10981 ggtgcgcgat cttcctctac gacaaaattt tcgtccgcgc tggtgggtga caacaggatc
    11041 actgttccac cttgtattac cgcattttcc agcgtaccgg catgcacttc agcccgacca
    11101 cccacattca cggacaggtt ttgcgtctta ccggaactgt agagctgaag gccatccgtc
    11161 cccagacgat aaatggatcc attctcaaca atggtgtcag agtcttcacc accgagatta
    11221 ttcatggtgc caccagcaag caacgtatca ctggctttcc cggccagcat aaaaacgccg
    11281 ccctgattaa tctcacaatt gctggcttcc ccacctggat acaccaacaa ttcaccacct
    11341 tcatctacca cgaccgctga ggttgtccca ttaaccaaca ggccgccctc ttgatcgaga
    11401 atgatttttt ccgcgcgatg tccttccagt acacgcaggt taccgccatt ttccagcaac
    11461 aaaccgcagg cataaccctg atcaacgcta aattcacctt cgggatggcg gccattaacc
    11521 gtagcgagcg tagagagact aattgcgcct ccctcggact gaacaatatc tgtggcaatg
    11581 gcaccgtcgc tgaccgatag cgtgccattg ttaccgtact gtgtgcattt ggcgatccca
    11641 ccggttgcca ctttcaacca gccagccccc gtgactacgg tattttcggc tcttccgcca
    11701 gcttcaacaa tcaactcgcc ttcagtaagt tgcgtcgcgc caatgacctc gccggtctta
    11761 acaatttgca cattcccgtc gctcatcaag tttttcgcat cagatcccat gatttattcc
    11821 tttgctgcat ctgtgtgcct ttattgctac ctaaatgtaa aggctacgga ggatttatcc
    11881 acgacagatt tgagatggtg gcaaacaact ctgtttaaac tctgatacac gaattattgg
    11941 gttgtatcag atgtaaatgc gatcctgaat aaaaatcgcc cttgcaaatc aacaaaatat
    12001 agccaatttg cttaaaagct ctgcaaacgg tcgaaatagc gcagaaaatt acgttttgcc
    12061 tcttgccacc ttcccactct gccgctaata ttcgtccccg ttgtcaccta caacgttgcg
    12121 ttcatagctc agttggttag agcaccacct tgacatggtg ggggtcgttg gttcgagtcc
    12181 aattgaacgc accatcctgc gtccgtagct cagttggtta gagcaccacc ttgacatggt
    12241 gggggtcggt ggttcgagtc cactcggacg caccagattt tcttaatctg gtcttctcct
    12301 ttttccctct gtttcttctc tgtatccaat acgttaaaag atttacactg tcttcgtatg
    12361 cgttatcaga aggagaatcg ctatggcaac tttgttacaa cttcattttg cttttaatgg
    12421 cccatttggc gacgcaatgg ctgagcagct taaaccgctt gctgagtcga ttaatcagga
    12481 acctggtttt ctgtggaagg tatggacaga aagtgaaaag aaccacgaag ccggtgggat
    12541 ctatcttttt actgatgaaa aaagcgccct tgcctatctg gaaaaacata ctgcccgact
    12601 taaaaatctc ggcgttgagg aagttgtcgc caaagttttc gatgtcaatg agccactgag
    12661 tcaaatcaat caggcaaaac tcgcctgaca gaatttaatc aagggcggtt agcgcccttt
    12721 tcatccctgt ctgaaatttc tcaaattcta aaaatctcaa ccaaacttat ctgataacac
    12781 taaattcgaa agaatgcgta caggtaagta acaatgaaaa aaattgctat tgtgggtgcc
    12841 gggcctacgg ggatctacac cttattctcg cttctacagc aacaaactcc actttctatt
    12901 tctatcttcg agcaggctga cgaggccggt gtcgggatgc catacagtga tgaggaaaac
    12961 tcaaaaatga tgctggcaaa tattgccagt attgaaatac cgccgattaa ttgtacgtat
    13021 ctcgaatggc tacaaaagca agaagccagc catctccagc gttatggcgt taaaaaagaa
    13081 accttgcacg atcgtcagtg tttaccgcga attctgctgg gcgaatattt ccgcgatcaa
    13141 tttttacgat tagtagacca ggcacgacag caaaaatttg cagtggctgt ttatgaatca
    13201 tgccaggtta ccgatctgca aattacaaat gctggcgtca tgctcgctac aaatcaggat
    13261 ttacccagcg agacgtttga tttagcggtg attgccacgg gtcacgtctg gcctgatgaa
    13321 gaagaagcaa ccagaacgta ttttcccagt ccgtggtcag gcctgatgga agcaaaggtc
    13381 gatgcgtgta acgtgggtat tatgggaaca tccttgagcg gactggatgc ggcaatggca
    13441 gtggctattc agcatggttc gttcattgaa gatgataaac aacacgtcgt ttttaaccgc
    13501 gataacgcaa gtgaaaagct aaatattacg ttgatgtcgc gcacgggtat tttacccgaa
    13561 gccgatttct attgccctat tccctacgag cccttacaca tcgtcaccga tcaggcatta
    13621 aatgctgaga ttcaaaaagg tgaagagggc cttttggatc gggtatttag attgatagta
    13681 gaggaaatca agtttgctga tccagactgg agccaacgca tagccttaga gagcctgaat
    13741 gtcgattcct ttgttcaagc ctggtttgcc gagcgcaaac aacgcgaccc atttgactgg
    13801 gcagaaaaaa atctccagga agtcgaacgc aataaacgag aaaaacatac tgttccctgg
    13861 cgttatgtca ttctgcgcct gcatgaagcc gtacaggaaa ttgttccaca tctgaatgaa
    13921 cacgaccata aacggttcag taaaggcctt gcccgggttt ttatcgataa ttatgcggca
    13981 atcccttcag agtctattcg tcggctgctg gccttacgtg aagcggggat cattcatatt
    14041 ctcgccctcg gtgaagacta cgaaatggaa attaatgagt cgcgcaccgt cctgaaaacg
    14101 gaagacaaca gctactcgtt tgacgttttt attgatgccc gcggacagcg tccgcttaaa
    14161 gtgaaagata ttcctttccc tgggctacgc gagcaattac agaaaacagg ggatgaaatc
    14221 cctgatgttg gcgaagatta tacgttacag caacccgaag atattcgtgg acgcgtagcg
    14281 ttcggcgcgt tgccctggtt gatgcacgac cagcctttcg ttcagggact tacggcatgt
    14341 gcagaaattg gtgaggcgat ggctcgggcg gtcgtaaaac ctgcatcccg tgcacgtcgg
    14401 cgtctttcgt ttgattaaag gtaaagctat cagcactcaa caaactgatg ctgttcatta
    14461 agacgatagc ggactccggt tcgaatattg ttttcacctt caatggcgac ggcgaagcga
    14521 actctttcgc cgtcatgata tgccagtgcg gcgcttcccc ctgacccgag aataattgag
    14581 tcgaccacgc ccgtgctcac taccgttgaa ttttcaccgc tggcaatgat gtgtacattg
    14641 tcgccgctgt tggcaattct ggcgtttgcg ccaaagctgg cgatttgcac caggtcacca
    14701 ttactggcga catgacaccg ttcacccaat gtacaaacgc gtactcgcat tccggtattc
    14761 gcaatccgac tactatctcc agcgctgctt atccgcgaag aattaccggt tacagcaacc
    14821 cgtgcgcgtt caccggagct gccaatgtga ctgttaaagc cgacacttcc aatccgcacg
    14881 ctataaccca tactggcaat ttgcgcggca tacccagcga ttgcgattcg ggcgttatcc
    14941 tcacaacagc cgatgcgagc atgatcgtcg ctgcgggcaa actgactgca aaatggtatc
    15001 tctccggggt ctgtggccag tttttgcata gaggaaactt cctgatgcgc gaagttttca
    15061 tccgccagcc attttttcca cgcatactca accagactct ccgcccagtc cgtatatcct
    15121 tcctcaatca gtgcatgatg aatatcggca taactaccgc cgcgtcggaa atggcgcagg
    15181 aaccagcgat acatcaccgc tccgatacgc cattctcgca ggtctgctcg tgtaatgatc
    15241 attcgttagt gccggtgata gccatcgacc atgcttttaa aggtttcgtg tggcgtacgc
    15301 cccgtggtgc aaagataaag atgtccgaag ataaaaaaga ggcttataaa tgccagagca
    15361 aaatgcgcct gcaataacca gtatcttacg ccaggaaaca catctcccac ggcttgcgga
    15421 tagagacaca acagccccgt caatagtaac aacggcagca atccatacat gacaccaaca
    15481 taggcgacct gctgtaaggg attaaattta gactgtgttg ttgccgggaa aggatgttct
    15541 tccccctgca taatgccaaa caaataaaat cgcgtttgtt ttgccgctcg ttccagccac
    15601 ccctgacgac gaatgcgata gtggtgacca ttatccccaa cggcattgat cagcacaaag
    15661 ccgagccagc atgccagtaa caaaaatccg caaacttcat gcaccgcaac cagactttta
    15721 accgcagttg cgcccaccat cgcaaagtga tttatcagcc cacttgccag caacaataca
    15781 aagagtaacg cattcgacca gtgccataat ctgaccgctt tgctgtaaag ataaaccttc
    15841 tcaccatgat cggtggctga tttcttcacg ccacgagcac gaagcaaggc gtgcagcccc
    15901 agcaccaacc acatcccaac cagcaatact ccggcaatga tcaaccacac cggccaaaat
    15961 tcgggagtga actgtggcac atagttcgct aactggctct gaaactgttc agcatgttgc
    16021 gacgggttca tacattttcc tttttaatca aatgttgacc gaaccggcga tacagatgcg
    16081 gtttcccggc accaggtagc tgatattgat agtatttatt atcctgcaac cacgcctgaa
    16141 tttctgggct atcttcgcga ccaaagatca atgcgtgttc cggacaggcg ctgacgcaaa
    16201 tgggcggaaa gccttttgcc agtcgggact cagcgcagaa atcacattta tctgccactt
    16261 tagtgacagg gttaaggtag cgaacctggt acggacaagc gccaatgcaa taactgcagc
    16321 cgatgcactg cgatttttct acccgcacga tcccctgctc atcacgccac gatgcccccg
    16381 tcgggcaaac gtcgatgcac ggagcatctt cgcagtgctg acatgactgg cgaaaaaagt
    16441 gatactgcgt ttcgttgtcg ttatcggtga ctggaatgtg tgctatcgat aaacggcttc
    16501 cctgagcggg gacgtggtta gttttacggc atgcgcgggc gcaaatatta cagccattgc
    16561 accgtgactc gtcatgaatc atggcatacc gaacttcctt ttcttgcctc gtgttcgcta
    16621 acagagaaga cgcagaacca gtaaaaaaga ttactgttcc catccccaga acaaatttgc
    16681 gtcgagtgaa ggacatctga ttatccccta atgcagtggc tgcaactgtc caccctatcc
    16741 atgacatctc cctgaaattt caggggttct gaaactgctc tacctcgaac cattcgcata
    16801 agccataagc cttgccatag gtcataaatc gctcactaaa caagtacaac tccgccgtcg
    16861 atgactccac ctgccgtata tcggcatatt caggtgcaac atccatcgcg gcgatcgcgg
    16921 cttcaatctg cgcttcctgg aagtaatatg gcgcttgcat cagcatggcg actttgtaag
    16981 gacgaggata tgtctggcac tcaaaacgaa cggcgtgtgc aatggcgcga caaatgtcct
    17041 gctccacaac ttgcaaagac atcgccgcgt agttttcact catggcctgc gttgagtaat
    17101 agtaatcatc ctggcttccc gtcatacaag cgatatcagc gtagtctccg ttctgcttaa
    17161 tgctttccag caaaactgac agctcctctt ctgcaaccga atagggtggc gagagaaaca
    17221 cggcgcgcgc caccagctgc ccagccgcag aatgctggcg aatgaactct gccaggattt
    17281 cagccggttc tggttcggtt accgtatcaa cggggtgacg catcccctgt aaccattgcc
    17341 gcttcgcctc gtcaacttcg ctgactttcg ctaacggcaa ttcatcccga tggttcatct
    17401 cacccattcc ttacacaggc agtagattgt gtgctgccag atcggcggca atatcttcca
    17461 gccccagacg ctgcaatgtt tcgcgggtgg gactaccaag ctgtgggtcc cagcccattt
    17521 ctttgtagaa catcgtgagc gaagcatgca tatcgtcacg atccattttg tcagtacctt
    17581 cagtaaagac cgggatctgc ggatccttgt cgaataccca ggaacagata agatcgtgtt
    17641 cattacgcat atctttggtt tgcataagtt ttaccgtgta ggcacgatgc aacgtaaaga
    17701 tacgctctgc agctaaatct aatttttcct gagtcatctc ttcgccggtg atcgctttga
    17761 agaatttggc ttcaagcgcc agatcgcccc ggtaattacg gcttttcagc ggcgaaacgg
    17821 tcattggcca gacccagtta cacagggtga cggcgttatg caaacagacc cgcaacagcg
    17881 accacttagc atatttaatt tttgcgtcat tgattggcgt gtagtttttg gtttcatcgt
    17941 aggcatcttc agaaccaaaa agctctttcg ccacttcacg ttgcagtttc aatggcaagc
    18001 cggaaccaat aaagttgata tgggtatgtg tcatgcagtc acggttgaac atacagttaa
    18061 caatggaacc gacctgcgct gacgcttcat tggcatggtg aaccggatag ccaaacggcg
    18121 accagagttt atttttcgcg tagccccagt actcttcacc caaattccag cgttctgcga
    18181 tggcatatga accatcagcc aggtgactca gctcacccac acgatgcgcc agacggtagt
    18241 aaaaatcttt aatgaaatta acgtcacccg cttccagttg atcccagtga atttccgcat
    18301 actcttcagc aggcagaaca cacttgaaca cccctttgct gtaacaataa gtaaagtcgc
    18361 gatgcaactg cccgtagtta caccataggc cgtagtcatc gaacaaattc agaccaacca
    18421 agttaccaat cacacggcca tcgtctttat cttcaaaatc tttcggaccg ttcgggaaga
    18481 tggtggtatg gacaaagttg gctacacaag tgttaccacc tgtgctgggc acgccaaact
    18541 ctttcacccg aggaatattc atttgggtca tacaacggat cgggcaagag tggcagccac
    18601 tcatttttac tgtgtatttc tctgccgccg gacctaagtc aaaaacggat ttataggtac
    18661 gaaagccgac cgtgttctga ttgcctggcg gaatttcccc cgtttcaatc ggaccacctt
    18721 cagccgcgcc ccaaaacagc cctttacgtg ctgtccaacg tgacttggga tctgaatact
    18781 ctgcccacga ttgcggcgta cttggcacga catggttgtt attcgcacca ataagttcag
    18841 tcatcatgta atcgttgaga cgcttcatct cctgacgatc ggcaatgttg acccctttcg
    18901 tcccttcaac cgcaatcgct ttcaggtttt tcgaacccat aattgcgcca gttcccgcac
    18961 cgccgctgtg gttacggcta ttcaacatgc cagagagagg aacaaggttt tccccagcct
    19021 ggccaatagc cgccacacag gtttccggac tggtcaatcg acaaatttct tccgtcgttg
    19081 cgcgcgtccc ttttccccat aagaaatcgg ctttttccag gctaactttg tcatctttaa
    19141 tcttcagcca taccggtgat ttcgccttcc cttcgataat aatgacgtcg tatccagcga
    19201 atttcatttg cgctgcaaaa aagccaccca tatgggcatc gacaactaaa tttcctttgg
    19261 taaaagtaga aagtgaggtg atatttacgc gagaactaca gggggcacca gatccagtta
    19321 atgggccggt agcaaagact aatttattcg cttcatcgaa aggtttcgtg cctggcggta
    19381 cttcgtcata cataattttg tagccgaagc ccatgccacc gacaaaactt ttaaacttac
    19441 tggaatcttc gagggtaata tttcctgtcg tgagattgac tcttaatata ttacctgtcc
    19501 aaccgttagc catgattttt tcctttgcaa gattctcaca gtaatatctt tccactcgat
    19561 aatttttaac gcccctgttg ggcaggcgtt tgcacattca ccgcataaca cacatttcga
    19621 ggatttttta ctttcggtat ttacggtggc catcatccac gggcatgccg tagtacaggc
    19681 gctacagcca atacagcgtt tatgatcgac ggtaatacag ccttctttct gctgccaggt
    19741 aatcgcacca atcgggcaga cgttcatgca ttgcggctct ttgcattgac ggcaggtgtc
    19801 cgcggtatag ttgagatcgc catacaggcc gccgccagag ccaaccccgt tgtcgccaaa
    19861 gaaataattg cgatggattt tgatacggga gaagaatgtc cctactgagc catcgttgaa
    19921 gttggtacaa gagatttcac agcggtggca acccgtgcat cgcgctcgct gggtcaccag
    19981 cacccctttg ggtgtattta tcaaccctac tgtgccgcta tcaatatctt cctgtttgca
    20041 acccaaaagt gacagtaacg caggggcaat tgttagacca gcaaggcctt ttcctgatat
    20101 acgcaagaat tctaatcgcg ttaagccaat atctaatagt ggacgatcaa ccgggttcat
    20161 ttatttcgca tcctcttcgc aaacacagtg ctgacaattc agcagcctga tattaagcat
    20221 tcaattaata cgctgctgac tctgtcccca acaccagata ttttccctaa cccgatagtg
    20281 tatgagaaaa gatttaacgc cgataaacta atcctttatg gttaggagaa aaaataatgt
    20341 gattattctg agcccttaac attgatcgtt atcaattaaa attacaaagc aagaaattat
    20401 aagtga
//
LOCUS       DADMJB010000064        20113 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.064, whole genome shotgun sequence.
ACCESSION   DADMJB010000064 DADMJB010000000
VERSION     DADMJB010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20113)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20113)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20113
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.064"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..1985
                     /locus_tag="JN078_002068"
     CDS             <1..1985
                     /locus_tag="JN078_002068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="catecholate siderophore receptor Fiu"
                     /protein_id="HAY9041275.1"
                     /translation="VGAFLAGENGNSTTGDAIYMRGADTSNSIYIDGIRDIGSVSRDT
                     FNTEQVEVIKGPSGTDYGHSAPTGSINMISKQPRNDSGIDASASIGSAWFRRGTLDVN
                     QVIGDTTAVRLNVMGEKTHDAGRDKVKNERYGVAPSVAFGLGTANRLYLNYLHVTQHN
                     TPDGGIPTIGLPGYSAPSAGTAALNHSGKVDTHNFYGTDSDYDDSTTDTATMRFEHDI
                     NDNTTIRNTTRWSRVKQDYLMTAIMGGASNITQPTSDVNSWTWSRTANTKDVSNKILT
                     NQTNLTSTFYTSSIGHDVSTGVEFTRETQTNYGVNPVTLPAVNIYHPDSSIHPGGLTR
                     NGANANGQTDTFAIYAFDTLQITRDFELNGGIRLDNYHTEYDSATACGGSGRGAITCP
                     AGVAKGSPVTTVDTAKSGNLVNWKAGALYHLTENGNVYINYAVSQQPPGGNNFALAQS
                     GSGNSANRTDFKPQKANTSEIGTKWQVLDKRLLLTAALFRTDIENEVEQNDDGTYSQY
                     GKKRVEGYEISVAGNITPAWQVIGGYTQQKATIKNGKDVAQDGSSSLPYTPEHAFTLW
                     SQYQATDDISVGAGARYIGSMHKGSDGAVGTPAFTEGYWVADAKLGYRVNRNLDFQLN
                     VYNLFDTDYVASINKSGYRYHPGKPRTFLLTANMHF"
     gene            1991..2704
                     /gene="ybiX"
                     /locus_tag="JN078_002069"
     CDS             1991..2704
                     /gene="ybiX"
                     /locus_tag="JN078_002069"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706682.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKHD-type hydroxylase YbiX"
                     /protein_id="HAY9041276.1"
                     /translation="MWGAGPTFWRNCMMYHIPGVLSPQDVARFREQLEQAEWVDGRVT
                     TGAQGAQVKNNQQVDTRSTLYAALQNEVLNAVNQHALFFAAALPRTLSTPLFNRYQNN
                     ETYGFHVDGAVRSHPQNGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGD
                     LVLYPSSSLHCVTPVTRGVRVASFMWIQSMIRDDKKRAMLFELDKNIQSLKSRYGENE
                     EILSLLNLYHNLLREWSEI"
     gene            2778..3044
                     /gene="ybiI"
                     /locus_tag="JN078_002070"
     CDS             2778..3044
                     /gene="ybiI"
                     /locus_tag="JN078_002070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-type zinc finger protein YbiI"
                     /protein_id="HAY9041277.1"
                     /translation="MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLYECEECGA
                     PIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR"
     gene            3309..3569
                     /locus_tag="JN078_002071"
     CDS             3309..3569
                     /locus_tag="JN078_002071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HAY9041278.1"
                     /translation="MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADG
                     ASTLDALEAKLTEKAAAAGASGYSITSATNNNKLSGTAVIYK"
     gene            complement(3797..4882)
                     /locus_tag="JN078_002072"
     CDS             complement(3797..4882)
                     /locus_tag="JN078_002072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate/lactate/ureidoglycolate dehydrogenase"
                     /protein_id="HAY9041279.1"
                     /translation="MESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAG
                     HDSHGIGMIPSYVRSWSQGHLQINHHAKIVKEAGAAVTLDGDRAFGQVAAHEAMALGI
                     EKAHQHGIAAVALHNSHHIGRIGYWAEQCAAAGFVSIHFVSVVGIPMVAPFHGRDSRF
                     GTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPA
                     VMQESPLGSLLTFAEHKGYALAAMCEILGGALSGGKTTHQETLQTSPDAILNCMTTII
                     INPELFGAPDCSAQTEAFAEWVKASPHDDDKPILLPGEWEVNTRRERQEQGIPLDAGS
                     WQAICDAARQIGMSEETLQAFCQQLAS"
     gene            complement(5023..5985)
                     /gene="ybiB"
                     /locus_tag="JN078_002073"
     CDS             complement(5023..5985)
                     /gene="ybiB"
                     /locus_tag="JN078_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein YbiB"
                     /protein_id="HAY9041280.1"
                     /translation="MDYRKIIKEIGRGKNHARDLDRDTARGLYAHMLNGEVPDLELGG
                     VLIALRIKGEGEAEMLGFYEAMQNHTIKLTPPAGKPMPIVIPSYNGARKQANLTPLLA
                     ILLHKLGFPVVVHGVSEDPTRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGA
                     FCPPLEKQLAMRWRMGVRNSAHTLAKLATPFAEGEALRLSSVSHPEYIGRVAKFFSDI
                     GGRALLMHGTEGEVYANPQRCPQINLIDREGMRVLYEKQDTAGSELLPQAKDPETTAQ
                     WIERCLAGSEPIPESLKIQMACCLEATGEAATISDGLARVNQAF"
     gene            complement(6013..8163)
                     /gene="dinG"
                     /locus_tag="JN078_002074"
     CDS             complement(6013..8163)
                     /gene="dinG"
                     /locus_tag="JN078_002074"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase DinG"
                     /protein_id="HAY9041281.1"
                     /translation="MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG
                     EEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK
                     IIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLK
                     GDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAE
                     VVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQL
                     DLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEH
                     RFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGRHDIVRLHRLILQMNRA
                     LGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWR
                     SIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRFE
                     PSIDNEEQHIAEMAAFFREQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGD
                     QPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVI
                     TEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKR
                     LLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR"
     gene            8283..8765
                     /gene="ybiA"
                     /locus_tag="JN078_002075"
     CDS             8283..8765
                     /gene="ybiA"
                     /locus_tag="JN078_002075"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-glycosidase YbiA"
                     /protein_id="HAY9041282.1"
                     /translation="MPVRAQRIQHVMQDTIINFYSTSDDYGDFSNFAAWPIKVDGKTW
                     PTSEHYFQAQKFLDEKYREEIRRVSSPMVAARMGRNRSKPLRKNWESVKEQVMRKALR
                     AKFEQHAELRALLLATAPAKLVEHTENDAYWGDGGNGKGKNRLGYLLMELREQLAIEK
                     "
     gene            complement(8997..10361)
                     /gene="rhlE"
                     /locus_tag="JN078_002076"
     CDS             complement(8997..10361)
                     /gene="rhlE"
                     /locus_tag="JN078_002076"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlE"
                     /protein_id="HAY9041283.1"
                     /translation="MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMAS
                     AQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL
                     NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR
                     MLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASD
                     QVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIH
                     GNKSQGARTRALADFKSSDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIG
                     RTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQ
                     QRGGGGRGQGGGRGQQQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRPRKP
                     AAAQ"
     gene            10590..11261
                     /gene="cecR"
                     /locus_tag="JN078_002077"
     CDS             10590..11261
                     /gene="cecR"
                     /locus_tag="JN078_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415317.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CecR"
                     /protein_id="HAY9041284.1"
                     /translation="MNNPAMTIKGEQAKKQLIAAALAQFGEYGMNTTTREIAAQAGQN
                     IAAITYYFGSKEDLYLACAQWIADFIGEQFRPHAEEAERLFAQPQPDRAAIRELILRA
                     CRNMIKLLTQDDTVNLSKFISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDA
                     NDTRMILHTHALIGEILAFRLGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGL
                     SQRSL"
     gene            11261..12259
                     /gene="hlyD"
                     /locus_tag="JN078_002078"
     CDS             11261..12259
                     /gene="hlyD"
                     /locus_tag="JN078_002078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secretion protein HlyD"
                     /protein_id="HAY9041285.1"
                     /translation="MMKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLKLYGNVDIRT
                     VNLSFRVGGRVESLAVDEGDAIKAGQVLGELDHKPYEIALMQVKAGVSVAQAQYDLML
                     AGYRDEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQA
                     TLKSAQDKLRQYRSGNREQDIAQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTR
                     AVEPGTVLNEGGTVFTVSLTRPVWVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQ
                     IGFVSPTAEFTPKTVETPDLRTDLVYRLRIVVTDADDALRQGMPVTVQFGNEAGHE"
     gene            12252..13988
                     /locus_tag="JN078_002079"
     CDS             12252..13988
                     /locus_tag="JN078_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308899.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAY9041286.1"
                     /translation="MNDAVITLNGLEKRFPGMGKPAVAPLDCTIHAGYVTGLVGPDGA
                     GKTTLMRMLAGLLKPDSGNATMIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLN
                     LYADLRSVTGEARKQTFARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVL
                     LLDEPGVGVDPISRRELWQMVHELASEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQ
                     GEPKALTQTMAGRSFLMTSPHEGNRKLLQRALKLPQVSDGMIQGKSVRLILKKEATPD
                     DIRHADGMPEININETTPRFEDAFIDLLGGAGTSESPLGAILHTVEGTPGETVIEAKE
                     LTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMD
                     LKESSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMSEAFGL
                     KSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVE
                     KGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTMEQAFIQ
                     LIHDWDKEHSNE"
     gene            13981..15114
                     /locus_tag="JN078_002080"
     CDS             13981..15114
                     /locus_tag="JN078_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAY9041287.1"
                     /translation="MSNPILSWRRVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFG
                     YGINLDSSKLRVGILLEQRSEAALDFTHTMTGSPYIDATISDNRQELIAKMQAGKIRG
                     LVVIPVDFAEQMERANATAPIQVITDGSEPNTANFVQGYVEGIWQIWQMQRAEDNGQT
                     FEPLIDVQTRYWFNPAAISQHFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLS
                     TEITRTELLLCKLIPYYFLGMLAMLLCMLVSVFILGVPYRGSLLILFFISSLFLLSTL
                     GMGLLISTITRNQFNAAQVALNAAFLPSIMLSGFIFQIDSMPAVIRAVTYIIPARYFV
                     STLQSLFLAGNIPVVLVVNVLFLIASAVMFIGLTWLKTKRRLD"
     gene            15125..16231
                     /locus_tag="JN078_002081"
     CDS             15125..16231
                     /locus_tag="JN078_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAY9041288.1"
                     /translation="MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLE
                     VTNATIAIYDEDNGEHSVELTQRFTRASAFTHVLLLKSPQEIRPTIDTQKALLLVRFP
                     ADFSRKLDTFQTAPLQLILDGRNSNSAQIATNYLQQIVKNYQQELLEGKPKPNNSELV
                     VRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQI
                     FIGKAVPALIVATFQATIVLAIGIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISS
                     LCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINPIRHFTDITKQIYLK
                     DASLDIVWNSLWPLLVITATTGSAAYAMFRRKVM"
     gene            complement(16193..16603)
                     /locus_tag="JN078_002082"
     CDS             complement(16193..16603)
                     /locus_tag="JN078_002082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041289.1"
                     /translation="MKWQQRVRVATGLSCWQIMLHLLVVALLVVGWMSKTLVHVGVGL
                     CALYCVTVVMMLVFQRHPEQRWREVADVLEELTTTWYFGAALIVLWLLSRVLENNFLL
                     AIAGLAILAGPAVVSLLAKDKKLHHLTSKHRVRR"
     gene            16736..17487
                     /locus_tag="JN078_002083"
                     /pseudo
     CDS             16736..17487
                     /locus_tag="JN078_002083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308895.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
     gene            17484..18725
                     /gene="clsB"
                     /locus_tag="JN078_002084"
     CDS             17484..18725
                     /gene="clsB"
                     /locus_tag="JN078_002084"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase ClsB"
                     /protein_id="HAY9041290.1"
                     /translation="MKCSWREGNKIQLLENGEQYYPAVFKAIGEAQERIILETFIWFE
                     DNVGKQLHAALLAAAQRGVKAEVLLDGYGSPDLSDEFVNKLTAAGVVFRYYDPRPRLF
                     GMRTNVFRRMHRKIVVIDARIAFIGGLNYSAEHMSSYGPEAKQDYAVRLEGPIVEDIL
                     QFELENLPGQSAARRWWRRHHKAEENRQPGEAQVLLVWRDNEEHRDDIERHYLKMLTQ
                     ARREVIIANAYFFPGYRFLHALRKAARRGVRIKLIIQGEPDMPIVRVGARLLYNYLVK
                     GGVQVFEYRRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANVIIHDRHFNQTLRD
                     NLNGIIAADCQQVDETMLPKRTWWNLTKSVLAFHFLRHFPALVGWHPAHTPRLTQVDP
                     PAQPTMETQDRVETENTGVKP"
     gene            18791..19681
                     /locus_tag="JN078_002085"
     CDS             18791..19681
                     /locus_tag="JN078_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000636449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0104 family protein"
                     /protein_id="HAY9041291.1"
                     /translation="MIVLLVVYAKKVDWEEVWKVIRDYNRVALLSAVGLVVVSYLIYG
                     CYDLLARFYCGHKLAKRQVMLVSFICYAFNLTLSTWVGGIGMRYRLYSRLGLPGSTIT
                     RIFSLSITTNWLGYILLAGIIFTAGVVELPDHWYVAQTTLRILGIGLLMIIAVYLWFC
                     AFAKHRHMTIKGQKLVLPSWKFALTQMLISSVNWMVMGAIIWLLLGQSVNYFFVLGVL
                     LVSSIAGVIVHIPAGIGVLEAVFIALLAGEHTSKGSIIAALLAYRVLYYFIPLLLALI
                     CYLLLESQAKKLRAKNEAAM"
     gene            complement(19717..>20113)
                     /locus_tag="JN078_002086"
     CDS             complement(19717..>20113)
                     /locus_tag="JN078_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706665.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="BAX inhibitor (BI)-1/YccA family protein"
                     /protein_id="HAY9041292.1"
                     /translation="IIVFSTAGAMFLISMLAGLLFNVDPGSHRFIIMMTLTGLALVII
                     VNAALMSERPIWVISCLVIVLWPGIISHGRNKLLELAGKCHSEELWSPVRCAFTGALT
                     LYYYFIGFFGILAAIAITLVWQRHTRFFH"
BASE COUNT         4725 a         5445 c         5300 g         4643 t
ORIGIN      
        1 gcgtgggtgc gtttttggcg ggtgagaacg gtaactccac cactggcgac gccatttata
       61 tgcgtggtgc cgatacctct aacagtattt atattgatgg cattcgcgat atcggcagcg
      121 tctcgcgcga caccttcaat accgagcagg tcgaagtgat taaagggccg tccggcaccg
      181 actacgggca cagcgcaccg acgggctcga tcaatatgat cagcaaacag ccgcgcaatg
      241 attccggcat tgacgcctcc gccagtattg gcagcgcctg gttccgccgc ggcacgctgg
      301 acgtcaatca ggtcattggt gataccaccg cggtgcgcct gaatgtaatg ggcgaaaaaa
      361 cgcacgatgc cggacgcgac aaagtcaaaa atgagcgtta cggcgtcgcc ccttctgtcg
      421 cttttggcct tggtacagcg aatcgtttgt atcttaatta tctgcatgtc acccagcaca
      481 acacgccaga cggcggcatt ccgaccatcg gtttgccggg ctattctgcc ccatctgcgg
      541 gaacggcggc cctgaatcat tccggaaaag ttgatactca taacttttac ggcacggatt
      601 ccgattacga cgattcgacc accgacaccg ccaccatgcg ttttgagcac gacatcaacg
      661 ataacaccac cattcgcaat actacccgtt ggtcgcgcgt aaagcaggat tacctgatga
      721 cggcgattat gggcggggcg tcgaatatta ctcagcccac cagcgatgtg aatagctgga
      781 cctggtcacg cacggcgaat accaaagatg tgagtaataa aattctcacc aaccagacca
      841 acctgacctc gacgttctat accagttcta tcggtcatga tgtcagtacc ggcgtggaat
      901 ttacccgtga aacgcagact aactacggcg ttaatccggt gacgttaccc gcggtaaata
      961 tttatcatcc tgacagcagc attcatcccg gcggcctgac gcgcaacggc gcaaacgcca
     1021 atggtcagac ggataccttc gcaatttacg cctttgatac gctgcaaatc acccgtgatt
     1081 ttgagctgaa cggcgggatc cgtctggata attatcatac tgaatatgac agtgccaccg
     1141 cctgcggcgg cagcggacgc ggtgccatca cctgcccagc tggtgtggca aaaggttctc
     1201 cggtcaccac cgtcgacacc gccaagtcgg gcaatctggt gaactggaaa gccggggcgc
     1261 tgtatcacct gacggaaaac ggtaatgtct atattaacta tgccgtttcc cagcagcctc
     1321 cgggcggcaa caacttcgcc cttgcgcagt ctggcagcgg taacagtgcc aaccgcacag
     1381 attttaaacc gcaaaaagcc aacaccagcg agattggcac caaatggcag gttctggata
     1441 aacgcctgtt gctcaccgcc gcactgttcc gtactgatat cgaaaatgaa gttgagcaaa
     1501 atgatgacgg aacttactcg caatacggta agaaacgtgt cgaaggctat gagatatccg
     1561 tggccgggaa tatcactccc gcgtggcagg tgattggcgg ctatacccag caaaaagcaa
     1621 ccatcaaaaa cggcaaagat gttgcccagg atggttcctc atcgctgccg tataccccgg
     1681 agcacgcctt caccttatgg agccagtatc aggcaaccga tgatatctct gttggcgcgg
     1741 gcgcacgcta tatcggcagt atgcataaag gttcagacgg cgcggtggga acgccagcgt
     1801 ttaccgaagg ttactgggtc gccgatgcca aactggggta tcgggttaat cgcaatctcg
     1861 acttccagct aaacgtttac aacctgtttg ataccgatta cgtcgcctca atcaacaaga
     1921 gcggctaccg ttatcacccg ggcaagccaa gaaccttctt gctcacagcc aatatgcatt
     1981 tctgattcag atgtggggcg caggccccac tttttggaga aattgtatga tgtaccacat
     2041 tcccggcgtg ttatcgccac aggacgtcgc tcgttttcgc gaacaactgg aacaagccga
     2101 atgggtggat ggacgcgtca ccaccggcgc acaaggtgcg caagttaaga acaatcaaca
     2161 ggtagacacc cgcagcacgt tatacgccgc cctgcaaaat gaggtgctga acgcggttaa
     2221 ccaacatgct ttattctttg ccgcggcctt gccgcgtacc ctttccacgc cgctgtttaa
     2281 tcgctatcag aacaatgaaa cctatggttt tcatgtggat ggcgcagtac gcagccatcc
     2341 acaaaacggc tggatgcgca ctgacctttc tgccacgctg tttttaagcg atccacaaag
     2401 ctacgacggc ggcgaactgg tcgttaatga caccttcgga caacatcggg taaaactccc
     2461 ggcaggtgat ctcgtgttgt atccctccag cagcctgcat tgcgtgacac ccgtaacccg
     2521 cggcgtacga gtggcatcat ttatgtggat ccagtcgatg atccgcgatg ataaaaagcg
     2581 cgccatgctg tttgaactag acaaaaatat tcagtcgctg aaaagccgct atggtgaaaa
     2641 tgaagagatc ctgtcgctgc tcaatcttta tcataatctg ctgcgggaat ggtcggagat
     2701 ctgacgcttg aactgcccag gttcgtccct atattagcta cacttaactg tacaagcatt
     2761 gatatgggga ggacgatatg gcatccggtt gggctaacga tgacgccgtc aacgaacaga
     2821 tcaacagtac aattgaagat gcgattgccc gcgctcgggg tgaaattccg cgtggcgaaa
     2881 gcctgtatga atgtgaagag tgcggtgccc ccatcccgca agctcgtcgg gaagccattc
     2941 ctggcgtgcg cttatgtatt cattgtcagc aggagaaaga tttacaaaaa ccagcgtata
     3001 caggatataa tcgcagaggt tcgaaagaca gccagttacg ttaactacaa ctggcgagat
     3061 gcatagcgag tataatttgt attttgcgtg gcattccgtg cctttaacgc tgctgtgact
     3121 gccacgcggc ataaaacaag tccataagta caacaaataa atggtttatc agtatgttag
     3181 atgtcaatca atttatttga acaaggcggt caattctctt cgattttatc tctcgaaaaa
     3241 aaacgtgata ctcatcacat cgacgaaaca acgtcactta tacaaaaatc acctgcgaga
     3301 gattaattat gaaaactatc aatactgttg ttgctgctat ggctctttca actctatcat
     3361 ttggcgtgtt cgcggcggaa ccggtaacgg catcccaggc acagaacatg aataaaatcg
     3421 gcgtggtttc tgccgatggc gcatccaccc tcgatgccct ggaagcgaaa ctgactgaga
     3481 aagccgcggc agccggtgcc agtggataca gcatcacttc tgccaccaac aacaataaat
     3541 taagcggtac tgcggtaatt tataagtaat tcgtaggacg gataaggcgt ttacgccgca
     3601 tccggcaaca gatgcctgat gcgacgctac cgcgtcttat caggcctaca aaatccgaac
     3661 cgttggacgg atcaggcggt tacgctacgt ccagcacaag tatttccctg tctgtttgcc
     3721 gacagacgca tatgctctaa ccctcattga tcctatatta cccttgtttg cccgtccgtt
     3781 actggacggg ctttttttag ctggctaact gctgacagaa agcctgcaac gtctcttccg
     3841 acataccaat ctgccgcgcc gcatcacaaa tggcctgcca gcttcccgca tccaatggaa
     3901 tcccctgctc ctgccgttcg cgacgcgtgt tcacttccca ctcgcccggt agcaaaatcg
     3961 gcttatcgtc atcatgcggc gaggctttca cccactcggc aaaggcttca gtctgcgcgc
     4021 tacaatccgg cgcgccgaac agttccgggt tgatgatgat agtggtcatg cagttaagaa
     4081 tggcatcggg actggtttgt aacgtttcct gatgcgtcgt tttaccgcca gaaagcgccc
     4141 cgccaagaat ttcacacatc gctgcaaggg cgtagccttt atgttcggca aaggtcaaca
     4201 gcgaccccaa cggcgactcc tgcattaccg ccggattggt cgtcggcacg ccgttaacgt
     4261 caatcaggca acctggcggc acggggacgc ctttatgcca ggcgacgcga gttttaccaa
     4321 atgcgatggc gctggtggcg taatcaagca acagcgggaa attatcttta cgagggaaaa
     4381 ccacacagaa cggattggtg ccaaagcggc tgtcgcgacc gtggaacggt gcgaccattg
     4441 gaataccgac cacgctaaca aagtggatag agacaaaccc cgccgctgca cactgctccg
     4501 cccagtaacc gatacggccg atatgatgcg agttatgtag cgccacggca gcaataccgt
     4561 gctgatgcgc tttctcaatc cccagcgcca tcgcttcgtg tgccgcgacc tgaccgaatg
     4621 cgcgatcgcc atcgagcgtg actgccgccc ccgcctcttt aacgattttg gcatgatggt
     4681 taatttgcag atgcccctga ctccaggaac gcacatagct tgggatcatg ccaataccat
     4741 gagaatcatg ccctgccagg tttgccgcga ttaaatgatc ggccactaat ttcgcttctt
     4801 gttcctcgct acccatctga cgaaatacag cctgaataaa actgtgcagc gtctgagcat
     4861 caaagcgatg accactttcc atggttaact cctgtttatg ttatgtgttt gttgtttttt
     4921 tatgctgcac gccgggcgcg ggaaggtcaa taaagatgca ggaatttcat attgcggtgg
     4981 ggtaaaagcc ggatgacatg gctcatccgg ctgagaaaag aattaaaatg cctgattaac
     5041 gcgcgccagg ccgtcgctga tagttgccgc ttcacccgta gcctccaggc agcaagccat
     5101 ctggattttc agcgattcgg gaatcggttc gctgccagca aggcaacgct caatccactg
     5161 cgccgtggtt tctgggtctt ttgcttgtgg cagtaactcg ctaccagcag tgtcctgttt
     5221 ttcatacagc acccgcatcc cttcacggtc aatgagattg atctgcgggc agcgctgcgg
     5281 attagcatac acttcgcctt cagtaccatg cattagtagc gcccgcccgc cgatatcgct
     5341 aaagaacttc gcgactcgcc cgatgtattc cggatgcgaa acgctggaaa gacgcagcgc
     5401 ctcaccttcg gcaaatggcg tcgccagttt cgccagggta tgtgcactgt tacgcacgcc
     5461 catccgccag cgcatcgcca gttgtttttc cagcggcggg caaaacgcgc cgacaggcat
     5521 aaacaccggt tgatgttcgt cgagcttcgc ctgcgcctgc ccgccgtgca acgttggtgt
     5581 aatacccatc agttcgaaaa tggtttctgt cagcacgcga gttggatctt cgctaacccc
     5641 gtgaaccacc acaggaaaac cgagtttgtg caggagaata gccaacaacg gcgtcaggtt
     5701 ggcctgttta cgcgcgccgt tgtaactggg gatgacaatc ggcatcggct tgcctgcagg
     5761 cggcgtcagc ttgatggtgt gattttgcat ggcttcgtaa aagccgagca tctctgcttc
     5821 cccttcccct ttgatacgta gcgcaatcaa tacgccgccc aactcaaggt cagggacttc
     5881 accattgagc atatgggcat acagaccgcg cgcagtatcc cggtctaaat cgcgcgcgtg
     5941 gtttttcccg cgcccgatct ctttaatgat tttgcgatag tccatttacg actccttacc
     6001 tgactcacat cattaacgcc gccgacggcg tggggatttc gttttttctt tctttttaac
     6061 tataccttca gggacttccg gttgctctat cggaaatacc ggtaatgcat ccagtagtcg
     6121 cttgccataa tttttggtca gcaagcgttt gtcgtagata accacttcgc cccagcaacc
     6181 gtggcttcga atcagtcgcc caacctgctg aatcaggtta aacgaggcgc tcggcaggct
     6241 ttgcacctca aacggatagc ggttgaggct tttcagccat tccccttcgg tgatcaccac
     6301 cgggctgtcg atgggcggaa aagcgatttt gtggatatgc acctggctga gcagatcacc
     6361 tttcaaatca agcccttcgg caaatgactg taagcccacc agcacactac gctcaccgtt
     6421 ggcaacgcgt ttgcggtgca gttcaactaa gcgataacgc ggctgatcgc cctgcaccag
     6481 cagcatcagg cgtaaatccg tcacatagtc gagaaagcgc tgcatcgccc gtccgctggc
     6541 aaacagtacc aacataccga gatgtttttt gctctccacc tgctcacgga aaaaggccgc
     6601 catttcggca atatgctgct cttcgttgtc gatggaaggc tcaaagcgca tccggggaat
     6661 aacaattttg ccctgttcgc agtggttaaa gggggaatcc agcgccacaa aacggtcgcc
     6721 cgctttctct ttcagcccgc tcatctcctg caaacgcgaa aaactgttca gcgaacgcaa
     6781 ggttgcggag gtgacaataa tgtgcggaat actgcgccac agcagccttt ccagctgatc
     6841 gctgacacgt attcccacgc agtgaaacca gagatgcagc tgcccttcgc gctcttcccg
     6901 cgtcgcccat ttggtcaccg gcgcaccgga agattgcgcc agagacgcca gccgccagag
     6961 tttgctttgc gcctcgaaca tccccaacgc gcggttcatc tgcaaaatca accgatgcag
     7021 acgcacaata tcgtggcggc cggttttctc acttaaatcg ttaagaaata actccgccag
     7081 accacgcagc atctcggtga gttttgccag ccgctggcag atctccagca cttcatcagg
     7141 cagttcgccc atcgcaaaac ggtgctctgc ctcctgcccg gcaggcatgt agagattgag
     7201 aatgttgttt aacgaggcga taagctcata caactcttca caatgcgcat tcaaacgttc
     7261 agggatcgcc agcggtggga tggtcttcgg gcgaaactgc tccatgcagg tagcgaccag
     7321 tttcgtgaac aagtccagct gtagtcgata ccagggcgcg gtgatttcag cgctcatctc
     7381 cagcgcatcc cgggccacat ctggcaggtg atgaccttcg tccagcacca gcagcagatt
     7441 tttcgggtca ggcagtacgg cttcgctttc catcgccgcc atcaccagcg catggtttgc
     7501 caccaccact tccgcttcct gaatctcccg acgagcaaca aaaaacgggc attcacgata
     7561 gtagtaacag ttacggttaa ggcagctggc tttgtcggta ctcaaacgac gccagagatc
     7621 atcatctata gcgatatccg tatgatcgcg cagaccatcc catttataag tgtcgagatc
     7681 gcccttcagc ttcgcacaac gtttttgctc ttcctgatta tttggcgtca gttcgtcgtc
     7741 aagaaacgcc agcagatcct gttgcgtggg ttcagtgctg gcgagcgccg tcagattacg
     7801 cggacaaacg tagcgcccac gcccgaaagc ggcagtgaat ttaagatcgg gaatgatctt
     7861 tttcagcagc ggtaaatctt tgctgtaaat ctgatcctgc aacgccacgt tggcggtact
     7921 caccaccagc gttttttgct cttcgcgggc aatggcgatg ccggggatca aataggagag
     7981 cgttttccca acgccggtgg gggcttcaat cgccagatgc cgcccttctt ctccggccag
     8041 cgttttggcg acgtccgcaa tcatctgccg ctgcggcgca cggggaataa agtcggggat
     8101 ctgttcctga agcgccttat accaggcggc aatttgcgct ttaagcgcgg cggttaatgc
     8161 catgagaaaa cctgaaatac tgtataaaca gccaatattg tggcattttt cggttttcag
     8221 gggtaatggt ttttctgttt ctggaaagcg gctcgcaata accaccaaca taatgcggtt
     8281 taatgcccgt tcgagcacaa aggatccaac acgtcatgca agacaccatc ataaatttct
     8341 acagcaccag cgatgactac ggtgattttt ctaactttgc cgcctggccc atcaaggttg
     8401 acgggaaaac ctggcccacc tccgaacact attttcaggc acaaaaattc cttgatgaaa
     8461 aataccgcga agagatccgt cgggtttctt cccccatggt cgccgctcgc atggggcgta
     8521 atcgttccaa gccacttcgt aaaaactggg agtcggttaa agaacaggtg atgcgtaaag
     8581 cacttcgtgc taaattcgaa cagcatgcag aactgcgtgc gctcttgctg gcaaccgcgc
     8641 ccgcaaaact ggttgagcat acggaaaacg atgcttactg gggagacggt ggtaatggta
     8701 agggcaagaa tcgactgggc taccttttaa tggagttgcg cgaacaattg gctatagaga
     8761 agtaacgtct cggtggctta tgggcggtaa aacagataaa ttttttcccg tgttctcaaa
     8821 ttgctgacaa gtgcttgttg tgaaatgccg gatgcggcgt aaacgcctta tccggcctac
     8881 aaaagcatgc aaattcaata tattgcagag ttaacgtagg cctgataagc gtagcgcatc
     8941 aggcagtttt gcgtttgttc atcagcctga tgccgggcat agcccggcat aaaagattac
     9001 tgcgcagcgg caggtttacg cggacggcgg cgacgttgtt gttcgcctgc cggtttggca
     9061 tcgccgaggc ggcgagacgg tttttctgca ggtttcgcgc ttgcagattt tgcgccacct
     9121 tccccacggc gtggttgctg ttgaccgcga ccaccacctt gcccacgacc gccgccgcca
     9181 cgttgctggc gaccgttctg gatcggttcg gctttgattg acgggtccgg ctcatagccc
     9241 ggaatcgcaa tgcgcgggat ctcttttttc agcagttttt cgatatcacg cagcagtttg
     9301 tgttcatcaa cacacaccag cgacaacgct tcaccggtag cagccgcacg accggtacgc
     9361 ccgatacggt ggacataatc ttccggtacg tttggcagtt catagttgac gacgtgcggc
     9421 aactcttcga tatccagacc gcgcgcagcg atatcggtcg ccaccagtac gcgaatgtca
     9481 ctcgatttaa aatcagccag cgcacgggta cgcgcacctt gcgatttatt cccgtggatc
     9541 gccgcactac ggatgccatc tttattgagc tgctcagcca gatggttagc gccgtgtttg
     9601 gtacgggtaa acaccagcac ctgctgccag ttccctttac caatcatgtg cgacagcaat
     9661 tcgcgtttgc gtttcttatc gacaaagtga acgtgctggg tcacctgatc agacgcggta
     9721 ttgcggcgtg ccacttcgat ttccagcggg ttgtgcaaca gtttttccgc cagggcttta
     9781 atatcgtcag agaaggtcgc agagaacagc aggttctggc gtttcgctgg cagttttgtt
     9841 aacacgcgac ggatatcgtg gataaagccc atgtcgagca tgcggtcagc ttcatcgagg
     9901 acgaggattt caacctgatc cagcttcact gcattttgat gttccaggtc cagcaaacgt
     9961 cccggtgttg ccaccagaac atcaacgccg ccgcgcagct tcatcatttg cgggttaatg
    10021 ctgacaccgc caaacaccac cagcgaacga atgttcaaat atttgctgta atcacggacg
    10081 ttttcgccaa tctgcgcagc cagttcacgg gtcggggtaa gaatgagcgc acgtaccgga
    10141 cgacgccctt tggcgtgcgg ctggcgagtg atcaggtgtt gcaacagcgg cagcgtaaag
    10201 cccgctgttt taccggtacc ggtctgggcg ctagccatca ggtcgcggcc ttccagcacc
    10261 gcagggatcg cctgctgctg aataggggtg ggttcacggt aaccctgctc ggcaacggcg
    10321 cgcaggatat cagggcttaa acccaaagaa tcgaaagaca taactactcc gaaccgcccc
    10381 gaccgttacc ggtgtagttt tcagggagat actgaaaagg aaaatgacaa aaaccacaat
    10441 gtcatgaggg agcggagtgt agcagttttt gtgacgcagc gcataaatta tccctgtgac
    10501 tggcgttgct aaaattctta gccatactgg acaactcccc tatggagtca taatcttaat
    10561 caatcatttg attaagaatg gactgtgcga tgaataatcc tgccatgaca atcaagggtg
    10621 aacaggcgaa aaaacagctg attgctgccg cactggcgca gtttggtgaa tatggaatga
    10681 acaccaccac tcgcgagata gccgcccagg ccgggcagaa tatcgctgcc atcacctact
    10741 acttcggttc gaaagaagat ttgtacctcg cctgcgccca gtggattgcc gattttattg
    10801 gcgagcagtt ccgtccgcat gccgaggaag ccgaacgctt gttcgcgcaa ccacagcctg
    10861 atcgggctgc catccgtgaa ctgatccttc gcgcctgcag gaacatgatt aagctgctca
    10921 cccaggatga caccgtcaac ctcagcaagt ttatctcccg tgagcagctc tctcccacgg
    10981 cagcctacca cctggtgcac gaacaggtga ttagtccgct acacagccac ctgacacgcc
    11041 tgattgccgc ctggaccggc tgcgacgcca atgacacccg catgatcctt catacccatg
    11101 cgttgattgg tgagattctg gcgttccgtc ttggcaaaga aacaattctg ttacgtaccg
    11161 gctggaccgc gttcgatgaa gaaaagaccg aactgatcaa ccagacggtg acctgtcata
    11221 tcgacctgat tttgcaagga ttatcgcaaa ggagtttgta gtgatgaaaa aacctgtcgt
    11281 gatcggactg gcggtagtgg tacttgccgc cgtggttgcc ggaggctact ggtggtatca
    11341 aagccgccag gataacggcc tgaagctgta tggcaacgtg gatattcgta cggtgaatct
    11401 tagtttccgt gttggggggc gcgttgaatc gctggcggtg gacgaaggtg atgcgatcaa
    11461 agcgggccag gtgctgggcg aactggatca caagccgtat gagattgccc tgatgcaggt
    11521 gaaagcgggc gtctcggtgg cacaggcgca gtatgacctg atgcttgccg ggtatcgcga
    11581 tgaagaaatc gctcaggccg ccgcagcggt gaaacaggcg caagccgcct atgactatgc
    11641 gcagaacttc tataaccgcc agcaaggact gtggaaaagc cgcaccattt cggcaaatga
    11701 cctggaaaat gcccgctcct cgcgcgacca ggcacaggca acgctgaaat cagcacagga
    11761 taaattgcgt cagtaccgtt ccggtaaccg tgaacaggac atcgctcagg cgaaagccag
    11821 cctcgaacag gcgcaggcgc aactggcgca ggcggagctg aatttacagg actcaacgtt
    11881 gatagcaccg tctgatggca cactgttaac gcgcgcggtg gagccaggca cggttctcaa
    11941 tgaaggtggc acggtgttta ccgtttcact aacgcgtccg gtgtgggtgc gcgcttatgt
    12001 tgatgaacgg aatcttgacc aggcccagcc ggggcgcaaa gtgctgcttt ataccgatgg
    12061 tcgcccggac aagccgtatc acgggcagat tggtttcgtt tcgccgactg ctgaatttac
    12121 cccgaaaacc gtcgaaacac cggatctgcg taccgacctc gtctatcgcc tgcgtattgt
    12181 ggtgaccgac gccgatgatg cgttacgcca gggaatgccg gtgacggtgc aattcggtaa
    12241 cgaggcagga catgaatgat gccgttatca cgctgaacgg cctggaaaaa cgctttccgg
    12301 gcatgggcaa gcccgccgtc gcgccgctcg attgtaccat tcacgccggt tatgtgacgg
    12361 ggctggtggg gccggatggt gcaggtaaaa ccacgctaat gcggatgctg gcgggattac
    12421 tgaaacccga cagcggcaat gccacgatga ttggctttga tccaatcaaa aacgacggcg
    12481 cgctgcacgc cgtgctcggc tatatgccgc agaaatttgg tctgtatgaa gatctcacgg
    12541 tgatggagaa cctcaatctg tacgcggatt tgcgcagcgt caccggcgag gcacgtaagc
    12601 aaacttttgc tcgcctgctg gagtttacgt ctcttgggcc gtttaccgga cgcctggcgg
    12661 gcaagctctc cggtgggatg aaacaaaaac tcggtctggc ctgtaccctg gtgggcgaac
    12721 cgaaagtgtt gctgctcgat gaacccggcg tcggcgttga ccctatctca cggcgcgaac
    12781 tgtggcagat ggtgcatgag ctggcaagcg aagggatgtt aatcctctgg agtacctcgt
    12841 atctcgacga agccgagcag tgccgtgacg tgttactgat gaatgaaggc gagttgctgt
    12901 atcaggggga accaaaagcc ctgacacaaa ccatggccgg acgcagcttt ctgatgacca
    12961 gtccacacga gggcaaccgc aaactgttgc aacgcgcctt gaaactgcca caggtcagcg
    13021 acggcatgat tcaggggaaa tcggtacgtc tgatcctcaa aaaagaggcc acaccagacg
    13081 atattcgcca tgccgacggg atgccggaaa tcaacatcaa cgaaactacg ccgcgttttg
    13141 aagatgcatt tattgatttg ctgggtggtg ccggaacctc agaatcgccg ctgggtgcaa
    13201 tattgcatac ggtagaaggc acacccggcg agacggtgat cgaagcgaaa gaactgacca
    13261 agaaatttgg tgattttgcc gccaccgatc acgtcaactt tgccgttaaa cgtggggaga
    13321 tttttggttt gctggggcca aacggcgcgg gtaaatcgac cacctttaag atgatgtgcg
    13381 gtttgctggt gccgacttcc ggccaggcgc tggtgctggg gatggatctg aaagagagtt
    13441 ccggtaaagc gcgccagcat ctcggctata tggcgcaaaa attttcgctc tacggcaacc
    13501 tgacggtcga acagaattta cgctttttct ctggtgtgta tggcttacgc ggtcgggcgc
    13561 agaacgaaaa aatctcccgt atgagcgagg catttggcct gaaaagtatc gcctcccacg
    13621 cgaccgatga actgccatta ggttttaaac agcggctggc gctggcctgt tcgctgatgc
    13681 atgaaccgga cattctgttt ctcgacgaac caacgtccgg cgttgatccc ctcacccgcc
    13741 gcgaattttg gctgcatatc aacagcatgg tagagaaagg cgtcacggtg atggtcacca
    13801 ctcactttat ggatgaagca gaatattgcg accgcatcgg cctggtgtac cgtgggaaat
    13861 taattgccag cggcacgccg gatgatttga aagcgcagtc ggccaacgac gagcaacccg
    13921 atcccaccat ggagcaagcc tttattcagt tgatccacga ctgggataag gagcatagca
    13981 atgagtaacc cgatcctgtc ctggcgtcgc gtacgggcgc tgtgcgttaa agagacgcgg
    14041 cagatcgttc gcgatccgag tagctggctg attgcggtag tgatcccgct gctactgctg
    14101 tttatttttg gttacggcat taacctcgac tccagcaagc tgcgggtcgg gattttactg
    14161 gaacagcgta gcgaagcggc gctggatttc acccacacca tgaccggttc gccctacatc
    14221 gacgccacca tcagcgataa ccgtcaggaa ctgatcgcca aaatgcaggc ggggaaaatt
    14281 cgcggtctgg tggttattcc ggtggatttt gcggaacaga tggagcgcgc caacgccacc
    14341 gcaccgattc aggtgatcac cgacggcagt gagccgaata ccgctaactt tgtacagggg
    14401 tatgtcgaag ggatctggca gatctggcaa atgcagcgag cggaggacaa cgggcagact
    14461 tttgaaccgc ttattgatgt acaaacccgc tactggttta acccggcggc gattagccag
    14521 cacttcatta tccccggtgc ggtgaccatt atcatgacgg tcatcggcgc gattctcacc
    14581 tcgctggtgg tggcgcgaga atgggaacgc ggcaccatgg aggctctgct ctctacggag
    14641 attacccgca cggaactgct gctgtgtaag ctgatccctt attactttct cgggatgctg
    14701 gcgatgttgc tgtgtatgct ggtgtcagtg tttattctcg gcgtgccgta tcgcgggtcg
    14761 ctgctgattc tgttttttat ctccagcctg tttttactca gtaccctagg gatggggctg
    14821 ctgatttcca cgattacccg caaccagttc aatgccgctc aggtcgccct gaacgccgct
    14881 tttctgccgt cgattatgct ttccggcttt atttttcaga tcgacagtat gcccgcggtg
    14941 atccgcgcgg tgacgtacat tattcccgct cgttatttcg tcagcaccct gcaaagcctg
    15001 ttcctcgccg ggaatattcc agtggtgctg gtggtaaacg tgctgttttt gatcgcttcg
    15061 gcggtgatgt ttatcggcct gacgtggctg aaaaccaaac gtcggctgga ttagggagaa
    15121 gagcatgttt catcgcttat ggacgttaat ccgcaaagag ttgcagtcgc tgctgcgcga
    15181 accgcaaacc cgcgcgattc tgattttacc tgtgcttatt caggtgattc tgttcccgtt
    15241 cgccgccacg ctggaagtga ctaacgccac catcgccatc tacgatgaag ataacggcga
    15301 gcattcggtg gagctgaccc aacgttttac ccgcgccagc gcctttactc atgtgctgct
    15361 gctgaaaagc ccacaggaga tccgcccaac catcgacaca caaaaggcgt tactcctggt
    15421 gcgtttcccg gctgacttct cgcgcaaact ggataccttc cagaccgcgc cgttgcagtt
    15481 gatcctcgac gggcgtaact ccaacagtgc gcaaattgcc accaactacc tgcaacagat
    15541 cgtcaaaaat tatcagcagg aactgctgga aggaaaaccg aaacctaaca acagcgagct
    15601 ggtggtacgc aactggtata acccgaatct cgactacaaa tggtttgtgg tgccgtcact
    15661 gatcgccatg atcaccacta tcggcgtaat gatcgtcact tcactttccg tcgcccgcga
    15721 acgtgaacaa ggtacgctcg atcagctact ggtttcgccg ctcaccacct ggcagatctt
    15781 catcggcaaa gccgtaccgg cgttaattgt cgccaccttc caggccacca ttgtgctggc
    15841 gattggtatc tgggcgtatc aaatcccctt cgccggatcg ctggcgctgt tctactttac
    15901 gatggtgatt tacggtttat cgctggtggg attcggtctg ttgatttcat cactctgctc
    15961 gacacaacag caggcgttta tcggcgtgtt tgtctttatg atgcccgcca ttctcctttc
    16021 cggttacgtt tcgccggtgg aaaacatgcc agtatggctg caaaacctga cgtggattaa
    16081 ccctattcgc cactttacgg acattaccaa gcagatttat ttgaaggatg cgagtctgga
    16141 tattgtgtgg aatagtttgt ggccgctact ggtgataacg gccacgacag ggtcagcggc
    16201 gtacgcgatg tttagacgta aggtgatgta acttcttatc tttcgccagc aaagacacta
    16261 ccgccgggcc ggcaaggatt gccagccctg caattgccag caaaaagttg ttttccagta
    16321 cgcgggacaa cagccacagc acaatcagcg ctgcgccaaa ataccaggtc gtggtcagct
    16381 cttccaacac gtctgccacc tcacgccagc gttgctcggg gtggcgctga aacaccaaca
    16441 tcatcactac cgtgacacaa tacagtgcgc ataatcccac gccgacgtga accagagtct
    16501 tactcatcca gcccaccacc agcagcgcca ctaccagtaa atgcaacata atctgccagc
    16561 aacttagacc cgttgcgaca cgaacacgtt gttgccactt catggcttct ctcctgaaga
    16621 atttatctct acttactcag agtaccgaac tttacggaaa attccgtaag accgcacctt
    16681 tttgtgacgc cgactacact atttcaatga gataagaggc aaagacagga aaattatgcc
    16741 cgatcaaaca caacaatttt cgttcaaggt gctcaccatc aacattcaaa aaggttttac
    16801 cgcgtttaac cgacgcttca ttttgccgga acttcgcgac gcggtgcgta ccgtcagcgc
    16861 cgatattgtt tgcctgcagg aagtgatggg cgcgcacgaa gttcatccgc tgcatgtgga
    16921 aaactggccc gatacctcgc actacgagtt tctcgccgac actatgtgga gcgattttgc
    16981 ctacggtcgc aatgccgtat acccggaagg gcatcacggc aacgccgtac tgtcgcgtta
    17041 tcccattgaa cattatgaga atcgcgatgt ttcggtcgat ggtgcggaaa agcgcggcgt
    17101 gctctactgc cgcattgtgc cgccgatgac cggaaaagcg attcatgtga tgtgcgtaca
    17161 tctgggcctg cgtgaggcgc accgtcaggc gcagcttgcg atggggtgaa tgagctaccg
    17221 gacggcgaac cggtattggt ggcgggtgat ttcaatgact ggcggcaaaa agctaatcat
    17281 ccgttaaaag tgcaggccgg actggatgag atttttaccc gcgcccacgg acgcccggcg
    17341 cgcacgtttc cggtgcaatt tcctctacta cgactggaca ggatctacgt caaaaatgcc
    17401 agcgccagcg cgccaaccgc gttgccgctg cggacatggc gacacctttc tgatcatgcc
    17461 cctttaagtg cggagattca tttatgaaat gtagctggcg cgaaggcaat aagatccagt
    17521 tgctggaaaa cggcgagcaa tattatcccg cggtgtttaa ggcgattggc gaggcacaag
    17581 aacgcatcat tcttgaaacg tttatctggt ttgaggataa cgtcggcaaa cagctgcatg
    17641 cggcactact ggcagcagcg caacgcggag ttaaagcgga agtcttgctg gatggctacg
    17701 gttcgccgga tctcagcgat gagtttgtca ataaactgac ggcagctggc gtagtgttcc
    17761 gctactacga tccccgccct cgcctttttg gtatgcgcac caatgtgttt cgccggatgc
    17821 atcgcaaaat tgtggtgatc gacgcgcgta tcgcctttat tggcgggctg aattactccg
    17881 ccgagcatat gtccagctac ggtccagagg ctaaacagga ttacgcggta cgccttgaag
    17941 ggccgattgt cgaagatatt ctccagtttg agctggaaaa cctgcctgga cagagcgcgg
    18001 cacggcgctg gtggcgacgt catcacaaag cggaagagaa ccgccagccg ggagaagcgc
    18061 aggtattgct ggtctggcgc gataacgaag aacatcgcga tgatattgaa cgccattatc
    18121 tgaaaatgct cactcaggcg cggcgggaag tgattatcgc caacgcctac ttcttccccg
    18181 gctatcgatt tttacacgcc ttgcgtaaag cggcacggcg cggggtgcgg atcaaactga
    18241 tcattcaggg cgaaccggat atgccgattg tcagagtcgg tgcgcgcttg ctgtataact
    18301 atctggttaa aggcggcgtt caggtttttg agtaccgccg ccgcccgctc cacggcaaag
    18361 tggcattgat ggacgatcac tgggcgacag tagggtccag taatctcgat ccgctcagtt
    18421 tgtcactgaa tctcgaagca aatgtcatca tccacgatcg tcattttaac cagacgctgc
    18481 gcgataatct gaacggcatt attgccgcag attgtcagca ggtggatgaa accatgctgc
    18541 ccaaacgcac ctggtggaac ctgaccaaaa gcgtgctggc gttccacttt ttacgccact
    18601 tcccggcgct ggttggctgg catccggcac acacaccacg tctgacgcag gttgatcccc
    18661 ccgcacaacc gacaatggaa acgcaggatc gggtagaaac tgaaaacacg ggggtaaaac
    18721 cctgatgagt aaatcacacc cgcgctagcg cttagcaaag aagatcctca cctggctgtt
    18781 ttttatcgcg gtgattgtgt tgctggtggt ctacgccaaa aaagtggact gggaagaggt
    18841 ctggaaggtc atccgcgact acaatcgcgt tgcgctgctt agtgcggtcg ggctggtggt
    18901 cgtcagctat ctgatttacg gctgctatga cctgctcgcc cgcttttact gcggtcacaa
    18961 actggcgaag cgccaggtga tgctggtgtc gtttatctgc tacgccttca acctgacgct
    19021 cagtacctgg gtcggcggca ttggtatgcg ctatcgtttg tactcccgac tagggttacc
    19081 gggcagcact attacgcgga ttttctcgct cagtattacc accaactggc tgggctatat
    19141 tttactggca gggattatct ttaccgcagg cgtggtggag ttgccggatc actggtatgt
    19201 cgctcaaact acgctgcgta ttctcggcat tggcttactg atgattatcg cggtttattt
    19261 gtggttttgc gctttcgcga agcaccgcca tatgaccatc aaagggcaaa agctggtgct
    19321 gccttcatgg aaattcgccc tcactcagat gctgatttcc agcgttaact ggatggtaat
    19381 gggggcgatt atctggctgt tacttggtca aagcgtgaac tatttctttg tactgggcgt
    19441 gttactggtt agtagtattg ctggcgtcat cgtgcatatt ccggcgggga tcggtgtgct
    19501 ggaagcggtg tttatcgcac tactggctgg ggagcatacc tcgaaaggga gcattatcgc
    19561 cgcgctgctc gcttatcgcg tcctgtatta ctttatcccg ctgctgctgg cgctgatctg
    19621 ttacctgcta ctggaaagcc aggcgaagaa gctacgggcg aaaaatgaag cggcgatgtg
    19681 aaatttagtt aagttcttta gtatctgcat tcacgactaa tgaaaaaaac gcgtatgcct
    19741 ttgccagaca agcgttatag ctatcgcggc aagtatccca aagaagccga taaaatagta
    19801 atagagtgtt aatgcacctg taaaagcgca acgaaccgga ctccacaact cttcactatg
    19861 gcattttcct gccagttcaa ggagcttatt tcgtccatgc gagataatgc ctggccataa
    19921 cacaatcact aagcaactta ttacccaaat gggccgttca ctcattaatg ccgcattcac
    19981 gatgattacc agggccaacc ctgtcaacgt catcataatg ataaaacggt gagaaccagg
    20041 atcaacatta aataataaac cggccagcat actgattaaa aacatcgcgc ccgcagtgct
    20101 gaacacaatg ata
//
LOCUS       DADMJB010000065        20027 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.065, whole genome shotgun sequence.
ACCESSION   DADMJB010000065 DADMJB010000000
VERSION     DADMJB010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20027)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20027)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20027
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.065"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..450)
                     /locus_tag="JN078_002087"
     CDS             complement(<1..450)
                     /locus_tag="JN078_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003843858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HAY9041293.1"
                     /translation="MNNTDLIHLIKRFMRNEHKAVEEVIDSPLSEVANLIKILQSCQG
                     KVVFIGVGKSGIIARKLAATFASTGTPSFFVHGTEAVHGDLGMVAKDDVVILISNSGE
                     TAEILATLPSLKKMGNYLISFIRSHHSSLAISCDLSVEIPVKSEADNL"
     gene            complement(419..1627)
                     /locus_tag="JN078_002088"
     CDS             complement(419..1627)
                     /locus_tag="JN078_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000382418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative C-S lyase"
                     /protein_id="HAY9041294.1"
                     /translation="MDIFNTSISRKGTYCTQWDFCEDRFGVKDVLPFSISDMDLPIPE
                     AIIRTLKKRLEHPILGYSRWQHDDYLNSIVNWYHQQYKTEIQPEWITYSPSVMYSISK
                     AIEILTLNGDNILIFTPVYNAFFDVIKHNGRNMLTTSLMKENGRGYVINWQDFELKIK
                     SAKMVLLCNPHNPTGTVWSEDDLHRIAACCARHNIWLCSDEIHSDFVFNHSFTSALTI
                     KDDKVVVFNSISKTFNVPALTGSYMISTDDNFNHKFRTISRYRDFVNSPSVLNVIATI
                     VAYNECEEWLKSLKVHIASNIQFTLQYLNENIPELIVWPAEGCYFSWVDCSALGYPFD
                     KFYRRLINEGRVGIMAGHVYGTEGEGYLRLNLACSREKLYMGLARLASVIKNINQEKE
                     NEQYGSYPSY"
     gene            complement(1627..3207)
                     /locus_tag="JN078_002089"
                     /pseudo
     CDS             complement(1627..3207)
                     /locus_tag="JN078_002089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031400.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
     gene            complement(3239..3873)
                     /locus_tag="JN078_002090"
                     /pseudo
     CDS             complement(3239..3873)
                     /locus_tag="JN078_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005008076.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
     gene            complement(3908..4060)
                     /locus_tag="JN078_002091"
     CDS             complement(3908..4060)
                     /locus_tag="JN078_002091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001432072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HAY9041295.1"
                     /translation="MIIEKVMNNNCVQASVNGQEVIISGPGVGYNKNMVCRSLSILQT
                     GFLCQK"
     gene            complement(4320..5573)
                     /locus_tag="JN078_002092"
     CDS             complement(4320..5573)
                     /locus_tag="JN078_002092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311701.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMIN domain-containing protein"
                     /protein_id="HAY9041296.1"
                     /translation="MSGSNTAISRRRLLQGAGAMWLLSVSQVSLAAVSQVVAVRVWPA
                     SSYTRVTVESNRQLKYKQFALSNPERVVVDIEDVNLNSVLKGMAAQIRADDPFIKSAR
                     VGQFDPQTVRMVFELKQNVKPQLFALAPVAGFKERLVMDLYPANAQDMQDPLLALLED
                     YNKGDLEKQVPPAQSGPQPGKAGRDRPIVIMLDPGHGGEDSGAVGKYKTREKDVVLQI
                     ARRLRSLIEKEGNMKVYMTRNEDIFIPLQVRVAKAQKQRADLFVSIHADAFTSRQPSG
                     SSVFALSTKGATSTAAKYLAQTQNASDLIGGVSKSGDRYVDHTMFDMVQSLTIADSLK
                     FGKAVLNKLGKINKLHKNQVEQAGFAVLKAPDIPSILVETAFISNVEEERKLKTATFQ
                     QEVAESILAGIKAYFADGATLARRG"
     gene            5805..7136
                     /gene="argA"
                     /locus_tag="JN078_002093"
     CDS             5805..7136
                     /gene="argA"
                     /locus_tag="JN078_002093"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HAY9041297.1"
                     /translation="MVKERKTELVEGFRHSVPYINTHRGKTFVIMLGGEAIEHENFSS
                     IVNDIGLLHSLGIRLVVVYGARPQIDANLAAHHHEPLYHKNIRVTDAKTLELVKQAAG
                     TLQLDITARLSMSLNNTPLQGAHINVVSGNFIIAQPLGVDDGVDYCHSGRIRRIDEDA
                     IHRQLDSGAIVLMGPVAVSVTGESFNLTSEEIATQLAIKLKAEKMIGFCSSQGVTNDD
                     GDIVSELFPNEAQARVEAQEEKGDYNSGTVRFLRGAVKACRSGVRRCHLISYQEDGAL
                     LQELFSRDGIGTQIVMESAEQIRRATINDIGGILELIRPLEQQGILVRRSREQLEMEI
                     DKFTIIQRDNTTIACAALYPFPEEKIGEMACVAVHPDYRSSSRGEVLLERIAAQAKQS
                     GLSKLFVLTTRSIHWFQERGFTPVDIDLLPESKKQLYNYQRKSKVLMADLG"
     gene            complement(7198..9024)
                     /gene="recD"
                     /locus_tag="JN078_002094"
     CDS             complement(7198..9024)
                     /gene="recD"
                     /locus_tag="JN078_002094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HAY9041298.1"
                     /translation="MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSH
                     DAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMIL
                     CGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAV
                     TLTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK
                     ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL
                     PMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTG
                     THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD
                     IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFG
                     VAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT
                     RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELV
                     YTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSSRE"
     gene            complement(9024..12566)
                     /gene="recB"
                     /locus_tag="JN078_002095"
     CDS             complement(9024..12566)
                     /gene="recB"
                     /locus_tag="JN078_002095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708611.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HAY9041299.1"
                     /translation="MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGL
                     GGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLE
                     EIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLR
                     YQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETL
                     ASRHAQIVARIATVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEE
                     TNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVIPRALAE
                     IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQ
                     QYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSA
                     PGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES
                     CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ
                     VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN
                     ALDIETLNNDEHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGER
                     RLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVT
                     IHKSKGLEYPLVWLPFITNFRVQDQAFYHDRHSFEAVLDLNAAPKSVDLAEVERLAED
                     LRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC
                     IEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGH
                     GIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNW
                     VQEKLELGGFESQWEPVLTEWITAVLQAPLNEKGVSLSQLSDRDKQVEMEFYLPISEP
                     LIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE
                     DSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYDRHFGGVIYLFLRGV
                     DKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA"
     gene            complement(12559..15447)
                     /gene="ptrA"
                     /locus_tag="JN078_002096"
     CDS             complement(12559..15447)
                     /gene="ptrA"
                     /locus_tag="JN078_002096"
                     /EC_number="3.4.24.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin"
                     /protein_id="HAY9041300.1"
                     /translation="MPRSTWFKALLLLVALWAPLSQAETGWQPIQETIRKSDKDNRQY
                     QAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYP
                     QADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAE
                     RERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQAL
                     KDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKG
                     IIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVE
                     GISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDEL
                     ANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMT
                     PQNARIWYISPKEPHNKTAYFVDAPYQVDKISEQTFADWQQKAANIALSLPELNPYIP
                     DDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFSSEPKADVSLILRNPKAMDSARNQ
                     VMFALNDYLAGLALDQLSNQASVGGISFSTNANNGLMVNANGYTQRLPQLFQALLEGY
                     FSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSI
                     TLKEVLAYRDALKSGARPEFMVIGNMTEAQATTQARDVQKQLGADGSEWCRNKDVVVD
                     KKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLG
                     YAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTTEAKLRAMKPDEFAQIQQ
                     AVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVV
                     EPQGMAILSQISGSQNGKAEYVHPEGWKVWENVSALQQTMPLMSEKNE"
     gene            complement(15623..18991)
                     /gene="recC"
                     /locus_tag="JN078_002097"
     CDS             complement(15623..18991)
                     /gene="recC"
                     /locus_tag="JN078_002097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HAY9041301.1"
                     /translation="MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQ
                     WLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQL
                     LEHEDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPEWLAQWETGHLVEGLGE
                     AQAWQAPLWKALVEYTHELGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISA
                     LPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPL
                     FRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNL
                     LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDR
                     LLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPV
                     LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRLWVNESGIRWGIDD
                     DNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS
                     LLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGL
                     GAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMND
                     GVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGLSIQDNS
                     ERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE
                     RQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVN
                     FRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGE
                     IFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLL
                     SVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREG
                     MSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDNI
                     WYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS"
     gene            complement(19004..19327)
                     /locus_tag="JN078_002098"
     CDS             complement(19004..19327)
                     /locus_tag="JN078_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HAY9041302.1"
                     /translation="MSASLKNQQGFSLPEVMLAMVLMVMIVTALSGFQRTLMNSLASR
                     NQYQQLWRHGWQQTQLRAISPPANWQVNRLQTSQAGCVSISVTLVSPGGREGEMTRLH
                     CPNRQ"
     gene            complement(19312..19719)
                     /locus_tag="JN078_002099"
     CDS             complement(19312..19719)
                     /locus_tag="JN078_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2509 family protein"
                     /protein_id="HAY9041303.1"
                     /translation="MNREKGVSSLALVLMLLVLGSLLLQGMSQQDRSFASRVSMESQS
                     LRRQAIVQSALAWGKMHSWQTQPAVQCSQYAETDAQVCLRLLADNEALLIAGYEGVSL
                     WRTGEVIDGNIVFSPSGWSDFCPLKERALCQLP"
     gene            complement(19716..>20027)
                     /locus_tag="JN078_002100"
     CDS             complement(19716..>20027)
                     /locus_tag="JN078_002100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent protein"
                     /protein_id="HAY9041304.1"
                     /translation="CIIVQWDANSNGIWDREPVKESDQIGFRLKEHVLETLRGATSCE
                     GKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVLTVNMRAASKSEPQTVVNASYSVTGFN
                     L"
BASE COUNT         5056 a         5346 c         4664 g         4961 t
ORIGIN      
        1 taaattatcc gcctcacttt tgacggggat ttcaacagat aaatcacaac ttatcgcaag
       61 cgatgagtga tgactgcgga taaaagagat caaataatta cccatttttt tcaaactagg
      121 cagtgtcgcc aggatttccg ccgtctcacc actgtttgaa ataagaataa caacatcgtc
      181 tttcgccacc atcccaaggt cgccgtgtac cgcttccgta ccgtgaacaa aaaacgaggg
      241 agttccggtg ctggcaaatg ttgcagcaag ttttctggca ataatgccag atttcccaac
      301 accaataaaa acaacttttc cctggcaaga ttgtaatatt ttaattaaat tcgcgacttc
      361 cgaaaggggg gaatcaataa cctcttctac tgctttatgt tcgttacgca taaaacgttt
      421 aataagatgg ataagatccg tattgttcat tttctttttc ctgattaata tttttaatta
      481 cactcgcaag gcgcgcaagc cccatatata atttttctcg actgcaggcc agattaagac
      541 gcagatagcc ctctccttca gtaccataaa catgccccgc cataatacct actctccctt
      601 cgttaattaa tcgacggtaa aatttatcaa agggataacc aagggccgag caatcaaccc
      661 acgaaaaata gcagccctca gctggccata cgatcaattc cggaatattt tcatttaaat
      721 actgcaaggt aaattgaatg ttagaggcaa tatgtacctt taatgacttt aaccattctt
      781 cacattcatt ataggcaaca atggtcgcaa ttacattcag tactgatggg gagtttacga
      841 aatcgcgata cctcgatatc gttctgaact tatgattaaa attatcgtca gttgaaatca
      901 tatatgatcc ggttagcgca ggaacattaa atgttttcga aatcgaatta aacaccacca
      961 ctttgtcatc ttttattgtt agcgctgacg tgaaactatg attaaaaaca aaatcactat
     1021 gtatttcatc tgaacataac caaatattat gccttgcaca gcatgctgcg attctgtgaa
     1081 gatcgtcttc cgaccagacc gttcctgtcg ggttatgagg attacataat aacaccatct
     1141 tcgcgctttt aattttaagc tcaaagtctt gccagttgat aacgtagcct ctcccatttt
     1201 ctttcatcaa agaggttgtt agcatgtttc gaccattatg cttaatcaca tcaaaaaatg
     1261 cgttataaac aggcgtgaaa atgagaatat tatctccatt caatgtcaat atttctattg
     1321 ccttagatat tgaatacatc acgcttgggc tataggtgat ccattctggt tgaatctctg
     1381 ttttatattg ttgatgatac caattgacta tcgaattcag atagtcatca tgctgccaac
     1441 gactgtaccc taaaatcggg tgttccagac gtttttttaa tgttctgatg atagcttccg
     1501 gtatcggaag atccatatct gaaatagaga atggtaatac atcttttaca ccaaatctgt
     1561 cttcacaaaa gtcccattgt gtgcaatatg ttcctttacg agaaattgag gtattaaaaa
     1621 tatccatcaa catatcccca tgtaattatc catatcccga cgtagggcga tgacttttgt
     1681 accgataatg acttgtaagg tattttgatc aagtttcaca accgcaattc ctccggccct
     1741 ttttattgca gcctcattta tcaatcccat atccgcgata gttaaacgca aacgagttac
     1801 acaattatcc agtgatttaa tattttcttt accacccaga gccttaacca tttgctccgc
     1861 tgcctgcaac tctgatttat catgaactgg gatgttagct attgcagttt cttcgtgagc
     1921 gttcagcgtg acaggactgg actcttcacg gcctacagtc atcaggttaa atttgagaat
     1981 ggtccaacgg aacacaaagt aataaatgaa gaaataagcc acttcaacac ataccgctaa
     2041 tggccatccc gttcttgtgc cacgtaagac accaaagcta ataaattgaa tcagatcgcc
     2101 agtaaagccc atcttcacgc ccatatatgg cagaaccatg ttagccaatc cattcataaa
     2161 ggcatggaag acaaacaaca gcgggctgac aaataagaac agaaattcaa tcggctcgct
     2221 gacgccgcca ataattaccg tgagcacacc ggaaatcagc aatgctttga tagcccttct
     2281 gttttgagca tgagcagtgc gatacatcgc cagcgcggct ccagccagac catactgaat
     2341 catcagtttg ccctgctcca ttttccccgc caaatccagc ggaatgaccg cattctcttt
     2401 gacgtatgcc ataaacatgt tcagggtgcc gtaatactct tcaccgccaa tcactgccga
     2461 tccgccgatt ggggtaaagc ggaaaactga tgtcaccaag tgatttaagc caaaaggtat
     2521 cgtcacgcgt tcggcaacag catagaagaa ataaccaaca ggaccggaag ttgaaatcca
     2581 gtgaccaatg agcatgaaaa gattgaaaaa tggcggccag ataaaaggaa tgatcagacc
     2641 aaatccactc atcacaatca gtgtaatgat aggcacaagg cgtgggccac tataaaaccc
     2701 taattattca ggaatacgta agttaacgat ctttttatac atgctggcga ctaataaccc
     2761 tgccacaatc ccacccaaca cgctggtatt gtaggactgg atcccgagta tgatggtttg
     2821 cccatgtgtc gacatttggt cagcagctac caataagtcg tgctgtttaa gataaaagtt
     2881 cgttccaaga tgcatcgcca taaagccaat taagccagaa aaagcgccat aggctttatc
     2941 atctttctct tttaataatc ccaaaggtat agctatcgca aacaatacag gtaaattaac
     3001 gaaggcaaac aaaccaaggc taacaataaa atcaagtatg gttttaatta acggaatagc
     3061 caacactgga atgaattttg ccatatcatc gctggctaaa ccacttccca gccctaacat
     3121 cataccacat acacttaaca gagcgatggg atacataaat gccttcccca ggctctgaaa
     3181 aaaactccag gatttctttt gtttcatact ggttatctca tgaaaatgtt atgtataatt
     3241 agtccattaa tactttgatg cgaatagaaa gatatagttt ctcttccaga atcaaatcat
     3301 atttaaaagt tgcgtacaga tatctttcaa tttcatgaat ggcacgttgt aactgaaaat
     3361 ctttttcaag aaactgctca tagatatcac caatattttt ctgttttatt ttttcattac
     3421 ataacacacg actagaaaaa tatttaaggt gcatcataaa tctggagtag ttaaatgaac
     3481 ttctgtccac ccttctgtta taaacaactt caataagctc cgtgattttt tgagacagct
     3541 caataatcct tactgattca taatcaactg aattttcata attatttaaa atatgcaata
     3601 ctataaaacc aatctcatca tccggtagtt gaacgctaaa ttgctcatta atgattgtta
     3661 atgcatcacg acttattgca tactctgctt tgtacaacgc tttgatttcc tcaaggaaaa
     3721 cattattaat ttgtatgcct gagacgactc gggatattgc attcgaaatg tgatcagcaa
     3781 gaatcagtag tagcgatgga ttgagttttt ttcgagatta ctctccgcat aatgcactat
     3841 cttttcggca acaaaaatat actcaatacc cacatgctca atcaatttgt agagtttatt
     3901 tttttgctca tttctgacat aaaaatccgg tttgcaggat gctcagggac cgacatacca
     3961 tatttttatt gtaaccaacg ccaggcccag aaatgataac ctcctgtccg ttcaccgatg
     4021 cctgtacaca attattgttc atgacttttt cgatgatcat tccatggctc cccaaaaaaa
     4081 aggcaaggca tgtcagaagt aataattact tcaaacattg ccttgcctga tttaacagtt
     4141 gcaagataat taactaatgc gtatacctta cacggaattg tgcttaataa aagagatgac
     4201 agacttattt tttaagccga tattcaaata ttcgacagca gtcacaaaac catcgttcaa
     4261 catttatgta aataatattt attcaatgaa acataaattc attgaataaa ttaaaaacat
     4321 catccccttc tcgccagcgt cgccccatcg gcaaaatacg ctttaatccc cgcaagaata
     4381 gactccgcaa cttcctgctg gaaagtcgcc gttttcagtt tacgctcttc ctcaacgtta
     4441 ctaataaacg ccgtttcgac cagaatggag ggaatatctg gtgcctttag tacggcaaac
     4501 ccggcctgtt caacttgatt tttatgcagc ttgttgattt taccgagctt attcagtacc
     4561 gctttaccaa acttcaggct gtcggcaatg gtcagcgact gcaccatatc gaacatggtg
     4621 tggtcgacat agcggtcacc gcttttgctc acgccaccaa tcaagtccga ggcgttctgg
     4681 gtttgtgcca gatattttgc cgcagtactg gttgcacctt tggttgagag cgcaaacaca
     4741 gaggaaccgc tcggctgacg actggtaaag gcgtcggcat ggatagagac aaacaggtca
     4801 gcacgctgtt tctgggcttt tgctacgcgc acttgcaacg gaatgaagat gtcttcattg
     4861 cgcgtcatgt acaccttcat attgccctct ttctcgatca gagagcgcag acggcgagct
     4921 atttgcaata ccacgtcttt ttcgcgcgtt ttgtatttcc ccaccgcacc ggagtcttcg
     4981 ccgccgtggc cagggtcaag cataataaca ataggacgat cgcgccctgc tttacccggt
     5041 tgtggaccac tttgtgctgg cggcacctgc ttttcgaggt cgcctttgtt gtaatcctcc
     5101 agcagcgcca gcagcgggtc ctgcatatcc tgtgcattgg ccggatagag gtccatcacc
     5161 agacgctctt taaacccggc gaccggcgca agggcaaaca gctgcggttt tacgttttgc
     5221 tttaattcaa aaaccatccg tacggtctgc gggtcaaatt gcccgacgcg cgccgacttg
     5281 atgaacgggt cgtctgcacg aatttgtgcc gccatcccct tgagtaccga gttcaggttt
     5341 acatcttcga tatccaccac cacgcgttca gggttactca acgcgaactg cttatatttc
     5401 agctgacgat ttgattctac cgtcacacgg gtgtagctgg acgcaggcca gacgcgcacc
     5461 gccacgacct ggctgaccgc agccagactg acctgactta cgctcaatag ccacatggca
     5521 cccgcgcctt gcagtaaacg acgacggctg attgcagtgt tggatcctga catgcctctc
     5581 ccgagcaaaa gaaatctaag ctgtgtaaca agtaaacgac taatttgacc ggaaacttta
     5641 gcgaaagacg cataatctgt catctaataa acggtaaaca ttctttttat attcacggca
     5701 ttactgataa aaaagtcgct ctcgcataaa atttacactt gcaccctgcg aaaaaacaga
     5761 ataaaaatac actaatttag aataatcatg caaaggggtg tgccgtggta aaggaacgta
     5821 aaaccgagct ggtcgaggga ttccgccatt cggttcccta tatcaatacc caccggggaa
     5881 aaacgtttgt catcatgctc ggcggtgaag ccattgagca tgagaatttc tccagtatcg
     5941 ttaatgatat cgggttgttg cacagcctcg gcatccgtct ggtggtggtc tatggcgcac
     6001 gtccgcagat cgacgcaaat ctggccgcgc atcaccacga accgctgtat cacaagaata
     6061 tacgtgtgac cgacgccaaa acactggaac tggtgaagca ggctgcggga acattgcaac
     6121 tggacatcac tgctcgcctg tcgatgagtc tcaataacac gccgctacag ggcgcgcata
     6181 tcaacgtcgt cagtggcaat tttattattg cccagccgct gggcgtcgat gacggcgtgg
     6241 attactgcca tagcgggcgt atccggcgga ttgatgaaga cgcgatccat cgtcaactgg
     6301 acagcggtgc aatagtgcta atggggccgg tcgctgtttc agtcactggc gagagcttta
     6361 atctgacctc ggaagagatt gccactcaac tggccatcaa actgaaagct gagaagatga
     6421 ttggtttttg ctcttcacag ggcgtcacta atgacgacgg tgatattgtc tcagaacttt
     6481 tccctaacga agcgcaagcg cgggtagaag cccaggaaga gaaaggcgat tacaactccg
     6541 gtacggtgcg ctttttgcgt ggcgcagtga aagcctgccg cagcggcgtg cgtcgctgtc
     6601 atttaatcag ttatcaggaa gatggcgcgc tgttgcaaga gttgttctca cgcgacggta
     6661 tcggtacgca gattgtgatg gaaagcgccg agcagattcg tcgcgcaaca atcaacgata
     6721 ttggcggtat tctggagttg attcgcccgc tggagcagca aggtattctg gtgcgccgtt
     6781 ctcgcgagca gctggagatg gaaatcgaca aattcaccat tattcagcgc gataacacga
     6841 ctattgcctg cgccgcgctc tatccgttcc cggaagagaa gattggggaa atggcctgtg
     6901 tggcagttca cccggattac cgcagttcat cacggggcga ggttctgctg gaacgcattg
     6961 ccgctcaggc gaagcagagc ggcttaagca aattgtttgt gctgaccacg cgcagtattc
     7021 actggttcca ggaacgtgga tttaccccgg tggatattga tttactgccc gagagcaaaa
     7081 agcagttgta caactaccag cgtaaatcca aagtgttgat ggcggattta gggtaagcga
     7141 tgaaaattgt cggatgcgac atgcgtaaca ctcgtgcatc gcatccggca attacgttta
     7201 ttcccgcgaa ctaaacaacg ccgccagacc actgcgccgc tcagtacgag tggcgattgc
     7261 cgcacttaat atacgctcat cggcatacag cgacagacgg cgacgcgcgc gggtcaccgc
     7321 ggtgtatacc agctctcgcg ttactaccgg cgtgcgttgg ctcggtaaaa tcaacgccgc
     7381 atggtcgaac tccgatccct gcgatttatg taccgtcatc gcccacgtag tttcgtgctc
     7441 tggcaagcga ctcggttgca cagacttaat attgccgtcc ggcatcgcaa accagacgcg
     7501 cgtcccctgc ccgcgatcca gcgcaatacc gatatcgcca ttaaacaacc caagcgcgct
     7561 gtcattacgg gcaatcatca ccggtcgacc ttcgtaccaa cgagagtgcg gatgacgatg
     7621 aattttgcgc ttctgttgca taaactgctc aattcgctca ttcagtccag ccacgccaaa
     7681 cggcccttcc cgcagggcgc acaaaagttg gtactcattg aacgcctgaa tgattaaatc
     7741 cggctcggca cgcgcttgca gcagatccag ataacgtcca taacccgcaa gagcttcctc
     7801 aagcatcgca atataatctt cgccgctctg taaaagtcgt ttttcgatat cagtaaaatc
     7861 ctgctgaaaa acggttttca ctgccgtttt atcaccacgg ttgatcgccg cagctaactg
     7921 accaatgcca gaatcgctgc cgaaacgata gcttttttgc agcaggcaga gactgtcgcg
     7981 caaagatgcc gcttctgtgc cggttcctgc cggaacgtga gtccccgtca ggcggcttag
     8041 ctgcctggca cgctcggcgg taaagcccgc gttggcataa gcgcagatat cgcccagcac
     8101 agccccagcc tcaaccgagg ccagttgatc acgatcgccg agaaagatca ctcgcgcatg
     8161 atcgggcaag gcgtcgatca gtctcgacat cataggcaga tcgatcattg acgcttcatc
     8221 taccaccagc acatcaagat gcagcgggtt accggcatga tgacgtaaac gctggctacc
     8281 cggctgcgcg cccagcaatc ggtgcaaagt gctggcatct tccggaatgc gtttcttttg
     8341 ttcatcggtc agcggtaact gtcgcaaagc cttgccgaga gattcggtta agcgcgcggc
     8401 agctttaccc gttggtgcag ccagacggat acggcagcgt tcgccgtcgg ccatttgaat
     8461 taacgctgcc agcaacttcg ccacggtggt cgttttaccg gtgcctgggc cgccggaaat
     8521 caccgagatc cgccgcgtca gcgtcactgc cgctgcaact ttttgccagt taatttcatc
     8581 gcttactgga aaaagtttgt ccagggtttg cgccagtaga gcttcatcaa cctcaatggc
     8641 atgattcacc tcattgaaga agcgcgctac cgtccgctcg ttacaccaca tgcgattcaa
     8701 ataaagacga tcgccacaga ggatcatcgg cgtgggttca tctcccctgc tgaccgcttg
     8761 agaagccagc aagcattctt cccaattttg tagctcaccg atttcactga cacaggtcgc
     8821 caacagcgga tgcgacgcct cgttattttc cagtcgtgaa agcggcaaac agacgtgtcc
     8881 ctctccggca tcatgactta acagtgccgc cgcgagggtg acggcaggat gttcatctcc
     8941 cgccacggtc agggcaaatt gcacatccag cgggcgtagc tgtttgtgct ccacagcttc
     9001 cagtaattgc ttttgcaatt tcattacgcc tcctccaggg tcataccggc aaacatctca
     9061 tccatcaggg caatcaaccc ggcgttgggt cgggttgtgt aaatcccttg ttgcggatgt
     9121 tctttatcaa cgccacgcag gaacagatag ataacgccgc caaagtgacg atcatagtcg
     9181 taatcagcaa tgcgatggcg cagataacga tgcagcgcca gggtataaag ctgatattgc
     9241 agatcatagc ggtgtgcctg catcgctgct gccatagcct gttgggtgta agccgaactg
     9301 tcttcaccca gccagttgga tttatagtcg agcaggtaat aacgcccttc gtggcggaat
     9361 actaggtcga taaagccttt taacatgccg cgtacctgca tgaactccag cggcgggcag
     9421 ccagcggata gcggatcaaa ctggcgaatt agtgcatcaa gctggctggc gatgagcggt
     9481 tcgctaatcg gcaggtaaaa ctccatctcc acctgtttat cgcggtcgga aagctgactc
     9541 aggctaaccc ccttttcatt gagaggtgcc tggaggacag ccgtgatcca ctcggtcaac
     9601 accggttccc actgcgattc aaagccgccg agttccagtt tttcctgtac ccagttcggg
     9661 tcaaccggct gggtaaaatc gaggtcttca aacaaactgt gcaagaatgt ccccggtgac
     9721 gcaccgcgcg ggaactgatg cggtgttaac gtcggttctt caacgacgct gaccacgcct
     9781 gcggcatcaa catccagccg tggcatcaga tcctgagcga taccgtgacc acgctgctgc
     9841 aagccggagt agctggtgac acgccagtta tcgccgggca atcgttgtag tgtcctcgca
     9901 ttcagttctg cagttaaagc atcattaacc tgccagggct ggttatcacc agtttgtgcc
     9961 gtttgccagg caatatcatc atcgcataac gcttcaatac aggtgcgaag ccctgccgca
    10021 tcttgcggtt cccctttttg cagcaaacgc ccgagcgcac tttggtggac gtcggtgtca
    10081 ccttttttat cgccacgacg gcgcaccagc ggtgcaacgc cgagactgca atgccaaacc
    10141 gaacgcgtca gcgccacgta aagcaaacgc agatcttccg ccagacgttc gacctccgcg
    10201 aggtcgacgc tttttggcgc agcattaaga tccaaaactg cctcaaacga gtggcgatcg
    10261 tgataaaacg cctgatcctg gacgcggaaa ttggtaataa atggcaacca gaccagcgga
    10321 tattccagcc ctttcgattt atggatcgtg acaatctgca ccagatgttt atcactttcg
    10381 aggcgcattt gttggctgga ggcattactg tctggctcga ggatatgttg cgataaccag
    10441 cgtaccagcg catgttcact ttccagctgc gttccggctt cttgtagcag ttcgctgata
    10501 tgcaagatat cggtaagacg ccgctcaccg cctgccgttg ccagcaagtt ttctgcaatg
    10561 ttacgcgccg acatcagcgc ccgcagcatc ggcataacgc cacgtttgcg ccagatttgc
    10621 cgataaccat cgaactcttc aactaccgca tcccacgcat gttcgtcatt attcagcgtt
    10681 tcgatatcca gcgcgttcag ccccatcatt gacgttgcca gcgcactacg cagggtgttc
    10741 tcacgttcgg gcgtcatcac cgcctgcaat aaccaaagca tttcctgcgc ttccagagtt
    10801 tcaaaaacac tgtcgcggtt cgaaaggtaa acggaaggga tttccagcaa cgttaaggca
    10861 tcgcgcacct gggcggcctc ctggcggctg cgcaccagca cactgatgtc cgaagcacgc
    10921 accggacgcg cgtcgtcgcc gttcatcagc aacgcttcgc cccgctgtcc ggcttgtagc
    10981 cagtcgcgga tttgcgcagc acatacctgc gccatggtac tttgatagtc gccaacgccg
    11041 cagctttcgc cttccatcag ccacattttc atcgcaggct gcgtttcacc tttaaataca
    11101 aaacgtaacg cctgattttt cccggctgat ttcactggaa taaacggtat ttcgcgaaac
    11161 atgaacgcgt catcagtctg gctgaaaagc ttgttcacac tgttcaccat tccaggtgcg
    11221 gagcgccagt tggtgtctaa agtgtagtgg gcgtgaactt cactacgcgc cttcatataa
    11281 gtgaagatat ccgcaccccg gaatgcatat atggcctgct tcgggtcgcc aatcagcaac
    11341 aatgcggttt ccggctgatg gtgccagata cggcgaaaaa ttcggtactg ctgggggtcg
    11401 gtatcctgaa attcatcgat cattgccacc gggaatcgcg tacggatcgc cgctgccaac
    11461 acctcaccgc tttcgctacg cagcgcggaa tcgagccgac ttaacatgtc atcaaaaccc
    11521 aattcgccac ggcggcgttt ttcacgcgct actgtttcgc ggatctcagc caatgcgcgg
    11581 gggatcacca gatcgcggat cgacaatggt tctgcaagca gttgatcgat cgcctcaaac
    11641 agtggatgtc gcggggtttc ccccccagct ttcgtgcgat cttctaagaa acgctgggag
    11701 aatttttcca gcgactccgg caactgataa ctgttggtct cttcttctgc ccaggcgctg
    11761 atcttgtcga tccatttagc ctgattgcta cggttaaact tgcgtcgatc aataccagaa
    11821 gattcgatca gcgcatccag ttcacccact gcgtcgcgcc actgctgttt taccgtagca
    11881 atacgcgcca caatttgcgc gtggcgggaa gccagcgttt catcatcggg cggcggtgct
    11941 ttgataaccg gcgcttcgcc ttgcagataa cgattaatat cgcgcagcaa cgcctgcggc
    12001 cctttccagg tttcaaagac gacctgggct atttcacgcg gcagcgggta gcagtggcga
    12061 cgccagaaat cggcgcaggc ctggtaacgt agcagagact catcttcaat cagctgctgc
    12121 tcaaacagca tgccggattc aaaggcattc aggttgagca tgcgctggca aaaaccgtga
    12181 atagtaaaga ctgccgcttc atccatctgc cgttcggcta acaacaacca ctgcgcggct
    12241 tgcgctttat cgtcgatctc ttccagcaga cgttcgtaca gtggattgtc ggtagtttca
    12301 cgcagacagg cgatgcgcaa ctcatggata ttgctacgga tacgaccacg caattctgcc
    12361 gtggcagcct cggtaaaggt gaccaccagc agttcttcaa cggtcagcgg gcggggaaag
    12421 gcggcggaac cgcctagtcc aagtaacagg cgcaaataga gcgccgcaat cgtaaaggtt
    12481 ttgcctgtgc cggcagaggc ttcaatcagg cgctcaccct gtaagggcaa gcgcaaagga
    12541 tctagtgtct cggcgacatc actcattctt ttcactcatc aggggcattg tttgctgcaa
    12601 cgcgctgacg ttctcccaca ctttccagcc ttcagggtgt acatattcgg ctttcccgtt
    12661 ctggctgccg gaaatctgcg acagaatagc catgccttgc ggctcgacca ccgcctgatg
    12721 gaagaaatca gcaagttttt gcggcgtcag cagttttatc tgggccacga ttttatcacg
    12781 cgaatcgaag cgcatattgc cgcgatcgaa atctttactt aacttcgatg cttcttcgcc
    12841 gagcgtttgc ggtgcctgca gcatctgggt aattaccgcc tgctggattt gcgcaaactc
    12901 atctggcttc atcgctcgca attttgcctc tgtggttggg aaaaacgcct tgtaacgctc
    12961 ccacaagaat gaaggctgtt tatcattgct ttgcaaaagg aagcccatgc cccactgacg
    13021 ccccacgctc attggaaacg caaacacggc atagcccaat tgttcttcgg tacgcaactg
    13081 attgtagaac cacggctgta cgatctgccc caacagagag ctataggctg agctggtgta
    13141 ttcatcgtag ccagtcggta caaataccgc tgccagtgcg gagtcggtgc tgttaccggc
    13201 tttttcaaag atgacggatt gttttttatc gaccactaca tctttgtttc gacaccactc
    13261 tgaaccatca gcgcccaact gtttttgcac atcgcgtgcc tgcgttgttg cctgggcctc
    13321 ggtcatgttg ccgataacca taaactctgg tcgagcccct gattttaagg cgtcgcgata
    13381 ggccagcacc tctttcaacg taatggaggg caaaatttta cgccgttcat ctcgcgagaa
    13441 gtacggcact tgcgagagca tctgcgcggg cataatcgcc tgctcaaacg ctttaccctt
    13501 ttctgcggaa tccatcatct ggttatacca agacttcgcc tgctcaagct gatcttccgt
    13561 agcggtatag ctaaagtacc cctcgagcaa tgcctggaac agctgcggca gacgctgggt
    13621 gtaaccatta gcattaacca taaggccgtt gttagcgttg gtggaaaaac ttatgccacc
    13681 aaccgacgcc tggttgctta actgatcaag cgccagccct gcgagataat cattgagcgc
    13741 aaacatcacc tgattgcggg cgctgtccat ggctttcgga ttacgcaaaa tcaggctgac
    13801 atcagctttg ggttcgctgg aaaaataacg gcttggcgca tacaccacgc gcagattcga
    13861 ctcatcaaca atcagctctg gatggtcata tttcttctct gacttaatca gcgagaaatc
    13921 gtcaggaata taggggttaa gctccggtaa ggagagcgca atattggcag ctttttgctg
    13981 ccagtcagcg aaagtttgtt cgctgatttt atcgacctga tacggcgcat cgacaaaata
    14041 agccgtttta ttgtgcggct ctttcgggct gatataccag atacgcgcat tctgcggcgt
    14101 catcatcgcc agacgttctt ttactgcttt agcatcgtac cgatcggcaa tattgactgc
    14161 atccagcgta tgctcaaccg gaacgcgaat catggtatct gccagccatt cgacgtaatc
    14221 catatcacgg gtgatcgacg gataacggaa gtcgatatcc agcacattcg ccagttcatc
    14281 gaagtattgt ttatcaatgc ctttttcacg taacagattg agatagctaa aaattgccgc
    14341 cacaacctga tcgcgattag ccaggccttt atcggttaaa gacgcagaga tcgctaatac
    14401 gccgctgttg ccgttgacga taggatcgga gttggcgcta atgccctcaa ctaatccctg
    14461 cttttgcagc cagtcggaaa gtgtacctgg gctgcgatta ccaatcagat aggtaatcaa
    14521 ttcatccgtt ttactacgga acttcgctga gttgttatcg atgcgaaact caacgcgcag
    14581 aactttacgc ggcagtgccg ggacgtaatg aatgataatg cccttttgcg cgtcggtgac
    14641 taccggcacg gtgatttccg gttttttgct ctctttgttc ggcacgcgac caaaggtgtc
    14701 cgccgccatt tttgccaact ccggcagcgg tttattgctg taaataaccg ccttcatcag
    14761 attggcggaa tagtacttct cgtggaaatc tttcagcgcc tgctgcaccg gattaccagg
    14821 tttatcgctt aaagtttcga ggttaccacc agaaaacttt gaaccggggt gtgccgggtt
    14881 aatggtttct gcgctgacct gtgccatgcg catcccgtca cgcgtacgcg ccatggttaa
    14941 ttcagcgttc accgcattac gctcacgttc ggcatatttc ttgtcgagca aaggttcagc
    15001 aatagcatcg gccaggcggt ctaccgcacc aggcaaggcg tcgttctcaa cttccagata
    15061 gaaagccgtg cgatacggcg cagtgctggc attgtgacta ccgccgtgca ttttgagata
    15121 ttcggccaga ctgtcagcct gcgggtactt tttcgacccc atcagactca tatgttcaag
    15181 gtaatgtgcc agcccctggt acgcctcggg atcttccagc gacccaacgg gcaccaccag
    15241 cgccgagagc gatttaactg cctgcggatc agaaaccagc aagaccacca taccgttatc
    15301 cagacgtata gcctgatact ggcggttatc tttatcactt ttacggatgg tttcctgaat
    15361 cggctgccat cccgtttctg cctgacttaa gggtgcccaa agggcaacta acaacaataa
    15421 tgctttgaac caagtgctgc ggggcattca cggacctcat aatcaactta attttctgtc
    15481 cagattcaac acgttaacgc aaatcatctg ccagaattta atcttgtgct gcacgagtca
    15541 gcctatgttt atataaccat cagtccgtga ctggtgcgca tcataaagta agcggataga
    15601 ttgcgcaatt tttatacagc actcatgact gattaaagcg aaacagcggt aacaggaaac
    15661 gttgcgactg ttcaacgatg gcctccattg tctctggtgt taattgccgc cagagccttt
    15721 gataccagat attatcacct tcaccacgca ccatcatgtt gccttcgtaa gcctgaagga
    15781 atttcgtacg ggctttttgc aacgtggaat cgtcatccag catggcatcg ttttgcgcgt
    15841 cataacaggt ttttagccac gcgccgccac tttcaggtaa caccagcaat ggcgcggaca
    15901 tcccttcacg atacccctca atcagttgtg agaggtaatg caaagcctgt tcggctgcaa
    15961 gcggcggaaa acgccactcg ccgtctttgc gtagaaaaag gcgactttca ccattaccac
    16021 cgctggcaca gtagacaagg tgttccagcc aaagttgcat tccctgcgcc acacttaata
    16081 aagagggacg ccagcgcaac aggccatccg gctgcacctg cggcaaccag ccagttatct
    16141 gcacaccgtt gcaggcgaga tcaatttcca tactctgccc cggctggcga caggcaatga
    16201 ctctgtcggc aagctgctgc atctcctggc actgagtttc ccagaaaatt tcaccaaaag
    16261 cgccatacgg taaatcccct gccgcccgga agcgacggaa caagcgttcg gcatcatcct
    16321 gctcaaccag tgcattcaat aactgctgat tgatttgata acggctaagc ccttccagaa
    16381 taaatggctc ggtgtcgggg atttcgctgt cttcggtacg gaagttcacc tgcaaacgca
    16441 tctggaaaaa tgcccgcacc ggatgtgccc agaatcgttg tagcgtttcc agcggcacgg
    16501 tttccggtaa ggtaaacggc agcggctgaa caaattcaga atgtgcttta ccagcctggc
    16561 tggccgcagg tagccattca cgagcatagc tttgtcgttc gcctggctgg tagttttgtg
    16621 gatcaaacgg catccgggta tggaggcagg taagatgcgc ttttaccctt gcctcgcttt
    16681 catcacagtt gagcgcttca tcgcccggta gataatgact ttgcccgatg tagtcgatca
    16741 gttcctgcac cagtaccgac gggaaacgtt cactgttatc ctgaatggaa agcccgatat
    16801 aactgatata gagtttttgc tgcgcggaaa ttaacgcttc caggaacagg tagcggtcgt
    16861 catcgcgacg gctacggtcg ccacgcttcg gtttctggct catcaggtca aagcccaatg
    16921 gcgcaagctg acgtggataa acgccgtcgt tcattcccag caggcaaacc actttgaacg
    16981 gaattgaacg cattggcatc agagtacaaa tgttaaccgg tccggcgaga aaacgctggc
    17041 tgatacgttc ttgatccaga cgctgtgcca gttcatcacg caatagtgac agcggcaccg
    17101 cgtcgccata ctgcgcacct aaaccttcgg cgataatcgc ctgccattgt tgttcgatca
    17161 gcgtcatcgc cgcttcggtt tccgcatccg gcaggaagaa ggcgttgagc atatcgcgac
    17221 aaaccggcaa ccactcttct agcggacgct cctgtgccag cccgcgacgc cagatgttta
    17281 gctgcattag cagtgaagcc agatgcccca ccagttctgc aattaagccg ctcgactcat
    17341 cataaggtag aaccgattgc cactcgccct gcgcgctctc catcgcgtag cccagcaaca
    17401 tacgcgtcag gccaaatcgc caggtgtgtt gtccggtggc ggggagttcc agctcgcgaa
    17461 cgttgtcgtc atctatcccc caacgaatgc cggattcgtt gacccacagg cgtaaataac
    17521 gcagcccttc ttcggtgatg tcaaaccgcg ccgccagcac cggcacatcc agtaatgcca
    17581 gcacgtcttc cgacacaaag cggctgtctg gcaacgataa caggctgata aacgcttcca
    17641 gtaccggatg cgactgccgc gcccgacggt cggaaatggc gtaaggcagg taacgatccg
    17701 caggtgcgct accaaacaca gcctgaataa acggactgta gctgtcgata tcagccacca
    17761 tcacgatgat gtcgcgcgga gtaagtgtcg ggtcttcttc cagcatcgcc agcaggcgat
    17821 cgtgcaaaac ttcaacttca cgctgcgggc tatggcaaac gtggaaggtg atactgctat
    17881 ccagtggatc aagcgggcgt ttgttatcgc tacgggaaaa ctcttcgatg ttcacaccag
    17941 caacggcacg gttttccagt tccagaatgt cagactgaat gttatgcagc aggttatctg
    18001 gcgtgacatc gacaaaggcg tccagctcct ggctgctctc caggtcagaa aggagataaa
    18061 tgtagtcgcg cccaagcttc ccccatgagg ccagcagcgg gttgccgaca tcctgttcac
    18121 catcgctgtt aaagagctgt ccggcatttt cgctatcgcg aaatagcggc aattcgcgat
    18181 cttcaaaact gtgtcgacgc tgacgagtca gcagtttcgc cagataagca ggatctttaa
    18241 tatcgcccca gtaataacgg caggggttgg taaacaggag atggatttca atatgtttac
    18301 ccagcgcctg gagcgcctgg agataaacag gcggtaacgc ggaaataccg catataaaga
    18361 cgcgcgaagg taaccccggc gggcaggtcg tcgcggactc cagcgtttcg ataaagcgct
    18421 gatagagatt cgcgcggtgc cagcgcggtt gtccgagttc atgggtatat tccaccagcg
    18481 ccttccacaa cggcgcttgc caggcctgtg cttctcccag cccttcaacc aaatgtcctg
    18541 tttcccattg tgccagccac tccgggcgat agaccagata ctggtcaaac aggtccgccg
    18601 cttttgagga aagctggaac agttttcgct tgtcgctatc gtcagtcaga taatgccgca
    18661 acagggtaaa gtcttcgtgc tccaacagtt gcggcagcag agtcatcagt ttccagctca
    18721 tgctctgttt gttaaaggcg ctctctttgg ggatctccgg taacacccgg acgaacatat
    18781 cccagataaa gctcgcaggc agcggaaaat caatgtttgc cgcaatacca aacttttgcg
    18841 acagggtcat ttgcagccac tgtgccatac cggtactttg caccagaatc atctctggtt
    18901 cgaaaggatc gtccagccgt tcgcgttcga caataaactc catcaacgct tccagcacgt
    18961 ccagacgatt ggaatggtag acccttaaca tagcggctcc tgactactga cgattcgggc
    19021 aatgcaggcg ggtcatctcg ccttctctgc ccccgggtga aactagcgta acgctgatgc
    19081 tgacacatcc cgcctgcgat gtctgcaatc ggttgacctg ccagttagct ggtggcgaaa
    19141 tcgcgcgcag ttgcgtttgc tgccagccat gccgccagag ctgttggtac tggtttctgc
    19201 tggcaagact gttcattaat gttcgctgga aacccgataa cgcagtgaca atcatcacca
    19261 tcaacaccat cgccaacatt acctccggca ggctaaagcc ttgttgattc ttcagggaag
    19321 ctgacataac gccctctctt tcagcggaca aaaatcgctc cagccgcttg gcgaaaaaac
    19381 aatgtttcca tcaatgactt cgcctgttcg ccacaacgaa acgccttcat aaccggcaat
    19441 caataaggct tcattatctg ccagtaaacg caaacaaacc tgggcatcgg tttcagcgta
    19501 ctgcgagcac tgaactgctg gctgcgtctg ccaggagtgc atttttcccc acgccagcgc
    19561 cgactgaacg atggcctggc ggcgcaatga ctgactttcc atgctcacgc gagaggcaaa
    19621 actgcgatcc tgttggctca ttccttgtaa tagcaaacta cccaaaacca gcagcatcag
    19681 gaccagagcc agtgacgaaa cacccttttc gcggttcaca ggttgaatcc tgtcacgcta
    19741 tagctggcat tcaccacggt ttgcggttca gacttactgg cagcacgcat attaaccgtc
    19801 aacaccggcg agaagccgct gacatcctga cgtacgacct gaaaagtgtc gataatgatg
    19861 gcatccggat tagtgacttt atcccagccc ttaccttcac aggatgtcgc accgcgtagc
    19921 gtttccagca catgctcctt cagacgaaat ccaatctggt cggactcttt taccggttcg
    19981 cgatcccaga taccgttact gttcgcatcc cactgcacaa tgataca
//
LOCUS       DADMJB010000066        19875 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.066, whole genome shotgun sequence.
ACCESSION   DADMJB010000066 DADMJB010000000
VERSION     DADMJB010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19875)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19875)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19875
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.066"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            54..830
                     /locus_tag="JN078_002101"
     CDS             54..830
                     /locus_tag="JN078_002101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000200160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutC"
                     /protein_id="HAY9041305.1"
                     /translation="MTSESCALDLGSAEAKAWIGVENPHRADVLTELRRSTVARVCTG
                     RAGPRPRTQALLRFLADHSRSKDTVLKEVPEEWVKAQGLLEVRSEISDKNLYLTRPDM
                     GRRLCAEAVEALKAQCVANPDVQVVISDGLSTDAITVNYEEILPPLMAGLKQAGLKVG
                     TPFFVRYGRVKIEDQIGEILGAKVVILLVGERPGLGQSESLSCYAVYSPRMATTVEAD
                     RTCISNIHQGGTPPVEAAAVIVDLAKRMLEQKASGINMTR"
     gene            840..1499
                     /gene="eutL"
                     /locus_tag="JN078_002102"
     CDS             840..1499
                     /gene="eutL"
                     /locus_tag="JN078_002102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutL"
                     /protein_id="HAY9041306.1"
                     /translation="MPALDLIRPSVTAMRVIASVNAEFARELKLPPHIRSLGLISADS
                     DDVTYIAADEATKQAMVEVVYGRSLYAGAAHGPSPTAGEVLIMLGGPNPAEVRAGLDA
                     MVAHIENGAAFQWANDAENTAFLAHVVSRTGSYLSSTAGITLGDPMAYLVAPPLEATY
                     GIDAALKSADVQLVTYVPPPSETNYSAAFLTGSQAACKAACNAFTDAVLEIARNPIQR
                     A"
     gene            1512..2012
                     /gene="eutK"
                     /locus_tag="JN078_002103"
     CDS             1512..2012
                     /gene="eutK"
                     /locus_tag="JN078_002103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutK"
                     /protein_id="HAY9041307.1"
                     /translation="MINALGLLEVDGMVAAIDAADAMLKAANVRLLSHEVLDPGRLTL
                     VVEGDLAAGRAALDAGCAAAMRTGRVISRKESGRPDDDTQWLVTGFNRQPKQPVREPD
                     APVIVAESADELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKRSSR
                     YRLKPH"
     gene            2058..3110
                     /gene="eutR"
                     /locus_tag="JN078_002104"
     CDS             2058..3110
                     /gene="eutR"
                     /locus_tag="JN078_002104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator EutR"
                     /protein_id="HAY9041308.1"
                     /translation="MKKTRTANLHHLYHEPLPENLKLTPKVEVDNVHQRQTTDVYEHA
                     LTITAWQQIYDQLHPGKFHGEFTEILLDDIQVFREYTGLALRQSCLVWPNSFWFGIPA
                     TRGEQGFIGSQCLGSAEIATRPGGTEFELSTPDDYTILGVVLSEDVITRQANFLHNPD
                     RVLHMLRSQSALEVKEQHKAALWGFVQQALATFCENPENLHQPAVRKVLGDNLLMAMG
                     AMLEDAQPMVTAESISHQSYRRLLSRAREYVLENMSEPVTVLDLCNQLHVSRRTLQNA
                     FHAILGIGPNAWLKRIRLNAVRRELISPWSQSTTVKDAAMQWGFWHLGQFVTDYQQLF
                     AEKPSLTLHQRMREWG"
     gene            complement(3116..4015)
                     /gene="hemF"
                     /locus_tag="JN078_002105"
     CDS             complement(3116..4015)
                     /gene="hemF"
                     /locus_tag="JN078_002105"
                     /EC_number="1.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-dependent coproporphyrinogen oxidase"
                     /protein_id="HAY9041309.1"
                     /translation="MKPDAHQVKQFLLNLQDTICQQLTAVDGAEFVEDSWQREAGGGG
                     RSRVLRNGGVFEQAGVNFSHVHGEAMPASATAHRPELAGRSFEAMGVSLVVHPHNPYV
                     PTSHANVRFFIAEKPGAEPVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCLPFGEDVY
                     PRYKKWCDDYFYLKHRNEQRGIGGLFFDDLNTPDFDHCFAFMQAVGKGYTDAYLPIVE
                     RRKAMAYGERERNFQLYRRGRYVEFNLVWDRGTLFGLQTGGRTESILMSMPPLVRWEY
                     DYQPKDGSPEAALSEFIKVRDWV"
     gene            complement(4019..4888)
                     /gene="amiA"
                     /locus_tag="JN078_002106"
     CDS             complement(4019..4888)
                     /gene="amiA"
                     /locus_tag="JN078_002106"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiA"
                     /protein_id="HAY9041310.1"
                     /translation="MSTFKPLKTLTSRRQVLKAGLAALTLSGMSQAIAKDEPLKTSNG
                     HSKPKAKKSGGKRVVVLDPGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHGIDA
                     RLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTNPKAAGASVFALSNRGASSAMA
                     KYLSERENRADEVAGKKATDKDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPVHKL
                     HSRNTEQAAFVVLKSPSVPSVLVETSFITNPEEERLLGTAAFRQKIATAIAEGVISYF
                     HWFDNQKAHSKKR"
     gene            5102..5527
                     /locus_tag="JN078_002107"
     CDS             5102..5527
                     /locus_tag="JN078_002107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase YpeA"
                     /protein_id="HAY9041311.1"
                     /translation="MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSL
                     FLVAEVNGEVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPK
                     IQINVPEDNDMVLGMYERLGYEHADMLSLGKRLIEDEEY"
     gene            5514..5963
                     /locus_tag="JN078_002108"
     CDS             5514..5963
                     /locus_tag="JN078_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708284.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2919 domain-containing protein"
                     /protein_id="HAY9041312.1"
                     /translation="MKSTEFHPVHYDAHGRLRLPLLFWLVLLLQARTWVLFIIAGASR
                     EQGTALLNLFYPDHDNFWLGLIPGIPAVLAFLLSGRRASFPRTWHVLYFLLLLAQVVL
                     LCWQPWLWLNGESVSGIGLALVVADIVALIWLLTNRRLRACFNEEKE"
     gene            6170..6745
                     /locus_tag="JN078_002109"
     CDS             6170..6745
                     /locus_tag="JN078_002109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpoE-regulated lipoprotein"
                     /protein_id="HAY9041313.1"
                     /translation="MKSLRLMLCAMPLMLTGCSTMSSVNWSAANPWNWFGSSTKVSEQ
                     GVGELTASTPLQEQAIADALDGDYRLRSGMKTANGNVVRFFEVMKGDNVAMVINGDQG
                     TISRIDVLDSDIPADTGVKIGTPFSDLYSKAFGNCQKADGDDNRAVECKAEGSQHISY
                     QFRGEWRGPEGLMPSDDTLKNWKVSKIIWRR"
     gene            6841..7740
                     /gene="yfeX"
                     /locus_tag="JN078_002110"
     CDS             6841..7740
                     /gene="yfeX"
                     /locus_tag="JN078_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311329.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphyrinogen peroxidase"
                     /protein_id="HAY9041314.1"
                     /translation="MSQVQSGILPEHCRAAIWIEANVKGEVDALRAASKTFADKLATF
                     EAKFPDAHLGAVVAFGNNTWRALSGGVGAEELKDFPGYGKGLAPTTQFDVLIHILSLR
                     HDVNFSVAQAAMEAFGDCIEVKEEIHGFRWVEERDLSGFVDGTENPAGEETRREVAVI
                     KDGVDAGGSYVFVQRWEHNLKQLNRMSVHDQEMMIGRTKEANEEIDGDERPETSHLTR
                     VDLKEDGKGLKIVRQSLPYGTASGTHGLYFCAYCARLHNIEQQLLSMFGDTDGKRDAM
                     LRFTKPVTGGYYFAPSLDKLMAL"
     gene            complement(7798..9102)
                     /gene="pbp4b"
                     /locus_tag="JN078_002111"
                     /pseudo
     CDS             complement(7798..9102)
                     /gene="pbp4b"
                     /locus_tag="JN078_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311328.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin binding protein PBP4B"
     gene            complement(9107..10531)
                     /gene="murP"
                     /locus_tag="JN078_002112"
     CDS             complement(9107..10531)
                     /gene="murP"
                     /locus_tag="JN078_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N-acetylmuramic acid transporter subunit
                     IIBC"
                     /protein_id="HAY9041315.1"
                     /translation="MAKEISSELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVD
                     PNIKTLEGVKSVILTSDQVQVVFGPGKAHRAAKAMSELLGEAPVQDAAEIAAQNKRQL
                     KAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLPDALN
                     FMKVFSKGLFTFLVILVGYNAAQAFGGTGVNGAIIAALFLLGYNPAATTGYYAGFHDF
                     FGLPIDPRGNIIGVLIAAWACARIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIM
                     PLGGWLFEGMSWLFMHLNSNPFGCAVLAGLFLIAVVFGVHQGFIPVYLALMDSQGFNS
                     LFPILSMAGAGQVGAALALYWRSQPHSALRSQVRGAIIPGLLGVGEPLIYGVTLPRMK
                     PFVTACLGGAAGGLFIGLIAWWGLPMGLNSAFGPSGLVALPLMTSAQGILPAMAVYAG
                     GILVAWVCGFIFTTLFGCRNVNLD"
     gene            complement(10535..11431)
                     /gene="murQ"
                     /locus_tag="JN078_002113"
     CDS             complement(10535..11431)
                     /gene="murQ"
                     /locus_tag="JN078_002113"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HAY9041316.1"
                     /translation="MQLEKMITEGSNAASAEIDRVSTLEMCRIINDEDKTVPLAVERV
                     LPDIAAAIDVIHAQVSGGGRLIYLGAGTSGRLGILDASECPPTYGVKPGLVVGLIAGG
                     EYAIQHAVEGAEDSREGGVNDLKNINLTAQDVVVGIAASGRTPYVIAGLEYARQLGCR
                     TVGISCNPGSAVSTTAEFAITPIVGAEVVTGSSRMKAGTAQKLVLNMLSTGLMIKSGK
                     VFGNLMVDVVATNEKLHVRQVNIVKNATGCNAEQAEAALIACERNCKTAIVMVLKNLD
                     AAEAKKRLDQHGGFIRQVLDKE"
     gene            11595..12452
                     /gene="murR"
                     /locus_tag="JN078_002114"
     CDS             11595..12452
                     /gene="murR"
                     /locus_tag="JN078_002114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MurR"
                     /protein_id="HAY9041317.1"
                     /translation="MLYLTKISNAGSEFTENEQKIADFLQANVSELQSVSSRQMAKQL
                     GISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNTTALHLHSSITSDDSLEVIA
                     RKLNREKELALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKI
                     GYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCVEAARKQGATVIAITSL
                     ADSPLRRLAHFTLDTVSGETEWRSSSMSTRTAQNSVTDLLFVGLVQLNDVASLKMIQR
                     SSELTQRLK"
     gene            12581..13372
                     /gene="ucpA"
                     /locus_tag="JN078_002115"
     CDS             12581..13372
                     /gene="ucpA"
                     /locus_tag="JN078_002115"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase UcpA"
                     /protein_id="HAY9041318.1"
                     /translation="MGKLTGKTALITGALQGIGEGIARTFARHGANLILLDISPEIEK
                     LADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMS
                     DDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKA
                     AIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPM
                     RRLADPLEVGELAAFLASDESSYLTGTQNVIDGGSTLPETVSVGI"
     gene            13676..14692
                     /locus_tag="JN078_002116"
     CDS             13676..14692
                     /locus_tag="JN078_002116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY9041319.1"
                     /translation="MAVNLLKKNSLALVASLLLAGHVQATELLNSSYDVSRELFAALN
                     PPFEQQWAKDNGGDKLTIKQSHAGSSKQALAILQGLKTDVVTYNQVTDVQILHDKGKL
                     IPADWQSRLPNNSSPFYSTMGFLVRKGNPKNIHDWNDLVRSDVKLIFPNPKTSGNARY
                     TYLAAWGAADKADGGDKAKTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFE
                     SEVNNIRKQYEAQGFEVVIPKTNILAEFPVAWVDKNVQANGTEKAAKAYLNWLYSPQA
                     QTIITDYYYRVNNPEVMDKLKDKFPQTELFRVEDKFGSWPEVMKTHFTSGGELDKLLA
                     AGRN"
     gene            14692..15525
                     /gene="cysT"
                     /locus_tag="JN078_002117"
     CDS             14692..15525
                     /gene="cysT"
                     /locus_tag="JN078_002117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000458418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter permease
                     CysT"
                     /protein_id="HAY9041320.1"
                     /translation="MFAVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSW
                     AQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDL
                     PFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQ
                     PVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFI
                     AGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRRVVG
                     H"
     gene            15525..16400
                     /gene="cysW"
                     /locus_tag="JN078_002118"
     CDS             15525..16400
                     /gene="cysW"
                     /locus_tag="JN078_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026168.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter permease
                     CysW"
                     /protein_id="HAY9041321.1"
                     /translation="MAEVTQLKRYDARPINWGKWFLIGIGMLVSAFILLVPMIYIFVQ
                     AFSKGLMPVLQNLADPDMLHAIWLTVMIALIAVPVNLVFGILLAWLVTRFNFPGRQLL
                     LTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQIMFSWPGMVLVTIFVTCPF
                     VVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEF
                     GAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRL
                     ENQEKRAQQEEHHEH"
     gene            16390..17487
                     /gene="cysA"
                     /locus_tag="JN078_002119"
     CDS             16390..17487
                     /gene="cysA"
                     /locus_tag="JN078_002119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter ATP-binding
                     protein CysA"
                     /protein_id="HAY9041322.1"
                     /translation="MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTL
                     LRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVL
                     PRRERPNAAAIKAKVTKLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL
                     DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEATEVADRVVVMSQGNIEQA
                     DAPDQVWREPATRFVLEFMGEVNRLQGTIRGGQFHVGAHRWPLGYTPAYQGPVDLFLR
                     PWEVDISRRTSLDSPLPVQVLEASPKGHYTQLVVQPLGWYNEPLTVVMHGDDAPQRGE
                     RLFVGLQHARLYNGDERIETRDEELALAQSA"
     gene            17621..18532
                     /gene="cysM"
                     /locus_tag="JN078_002120"
     CDS             17621..18532
                     /gene="cysM"
                     /locus_tag="JN078_002120"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HAY9041323.1"
                     /translation="MSTLEQTIGNTPLIKLQRMGPNNGSEVWLKLEGNNPAGSVKDRA
                     ALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA
                     MRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQ
                     QTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPAEYLP
                     GIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKANPGAVVV
                     AIICDRGDRYLSTGVFGEEHFSQGAGI"
     gene            complement(18535..18903)
                     /locus_tag="JN078_002121"
     CDS             complement(18535..18903)
                     /locus_tag="JN078_002121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfeK family protein"
                     /protein_id="HAY9041324.1"
                     /translation="MKKIICLVITLLMTLPAYAKLTAHEEARINAMLEGLSQKKDLIF
                     VRNGDEHTCDEAVSHLRLKLGNTRNRIDTAEQFIDKVASSSSITGKPYIVKIPGKSDE
                     NAQPFLHALIAQTDKTVPAQ"
     gene            19008..19859
                     /gene="pdxK"
                     /locus_tag="JN078_002122"
                     /gene_synonym="thiJ"
     CDS             19008..19859
                     /gene="pdxK"
                     /locus_tag="JN078_002122"
                     /gene_synonym="thiJ"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine/pyridoxal/pyridoxamine kinase"
                     /protein_id="HAY9041325.1"
                     /translation="MSSLLLFNDKSRALQADIVAVQSQVVYGSVGNSIAVPAIKQNGL
                     NVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQ
                     IKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNI
                     FELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITSASGNEENQEMQVVVVSADSVNV
                     ISHSRVKTDLKGTGDLFCAQLISGLLKGKALNDAVHRAGLRVLEVMRYTQQHESDELI
                     LPPLAEA"
BASE COUNT         4574 a         5044 c         5609 g         4648 t
ORIGIN      
        1 cggcccccgc gctgtcagaa gcaaagtgca ccaccaccac ctgtgcggca ccggtgacct
       61 cggaaagctg cgcgctggat ttaggttctg cggaagcaaa agcgtggatt ggtgttgaaa
      121 acccgcatcg cgcagacgta ttaacagaac tgcgtcgcag caccgtggcc cgcgtttgta
      181 ccggtcgtgc cggtccgcgt ccgcgtaccc aggcgttgct gcgtttcctg gccgatcact
      241 ctcgttcgaa agataccgta ctgaaagaag tgccggaaga gtgggtgaaa gcgcagggct
      301 tgctggaagt acgctccgaa attagcgaca aaaatctcta cctgactcgc ccggatatgg
      361 gccgccgcct gtgtgcagaa gctgttgaag cgctgaaagc acagtgtgtt gctaatccgg
      421 acgtacaggt cgttatttct gatggcctgt caactgatgc catcaccgtg aactacgaag
      481 agatcctgcc gccgctgatg gcgggcctga aacaggccgg gctgaaagtc ggcacgccat
      541 tctttgttcg ttatggtcgc gtgaagattg aagatcagat cggtgagatc ctcggcgcga
      601 aagtggtgat cctgctggtg ggggaacgtc cggggttggg tcagtcagaa agcctctcct
      661 gttacgccgt ttactcgccg cgtatggcga ccaccgttga ggccgatcgc acctgcatct
      721 ctaacattca ccagggcggc acgccgccgg ttgaagccgc agccgtcatt gtggatttgg
      781 cgaaacgtat gctggagcag aaagcatccg gcatcaacat gacccgataa ggaggcatca
      841 tgccagcttt agatttgatt cgaccgtcgg taaccgccat gcgggtgatt gcctccgtta
      901 acgctgaatt tgcgcgtgaa ctaaaattgc cgccgcatat tcgtagcctc gggctgattt
      961 ctgctgattc cgatgacgtc acctacattg cggctgacga agcgaccaag caggcgatgg
     1021 tcgaagtggt atatggccgc tcgctgtatg cgggagcagc acacggaccg tcaccgactg
     1081 ccggtgaagt gctgattatg cttggtgggc caaacccggc ggaagtgcgt gctggtctgg
     1141 atgcgatggt tgcgcatatt gaaaatggcg ctgctttcca gtgggctaat gacgcagaaa
     1201 acaccgcatt cctggcacat gtagtttcgc gtaccggttc ttatctctca tcaaccgccg
     1261 ggatcacgct tggcgatccg atggcgtatc tggtggcacc gccgctggaa gcgacctacg
     1321 gcattgatgc agcgttgaaa tctgccgacg tacagctggt gacctatgtc ccgccaccgt
     1381 ctgaaaccaa ctactcggca gcatttttaa ccggtagcca ggccgcgtgt aaagcagcct
     1441 gtaacgcctt taccgatgca gtgctggaaa tcgcgcgtaa tccaatccag cgtgcgtaac
     1501 ggaggttgcc gatgatcaat gcactgggat tgctggaagt ggacggcatg gtcgccgcga
     1561 tagatgcagc ggatgccatg ctcaaagcag ctaacgttcg tctgctcagt cacgaagtgc
     1621 ttgaccctgg tcgcttaacg ctggtggtgg aaggcgatct ggcggcgggt cgtgcggcgc
     1681 tggacgcagg ttgtgctgcc gcgatgcgta ccgggcgtgt catcagccgc aaggagagcg
     1741 gtcggccaga cgatgacacc cagtggctgg ttactggctt taaccgccag ccgaagcaac
     1801 ccgtaaggga acccgacgcg ccagttatcg tcgcggaatc tgctgacgag ttgttggcgc
     1861 tgttaacatc agtacgtcag ggaatgacgg caggagaagt ggctgcccac tttggctggc
     1921 cgctggaaaa agccagaaat gcgctcgaac agctcttttc tgccgggacg ttacgtaaac
     1981 gcagtagtcg ttatcgtctc aagccccatt aacctgtcgg aggtgctggg tgtcctacaa
     2041 cacccggcat taacatcatg aaaaagaccc gtacagccaa tttgcaccat ctttatcatg
     2101 aacccttacc cgaaaacctg aagctcacgc cgaaggtcga agtggataat gttcatcaac
     2161 gacagacaac ggatgtctat gaacatgctt taacgattac cgcctggcag cagatttacg
     2221 atcagctgca tccgggcaag tttcatggtg aatttacgga aattctactc gatgatattc
     2281 aggtttttcg tgaatacacc ggtctggcgc tgcgtcagtc gtgcctggtc tggccgaact
     2341 cgttctggtt tggcattccg gcgacgcgcg gtgagcaggg atttatcggt tcgcaatgtc
     2401 tgggaagcgc ggaaatcgcc acccgccctg gtggcactga atttgaactg agcacgccgg
     2461 atgattacac gatcctgggc gtggtgcttt ctgaagatgt catcacccgg caggctaact
     2521 ttttgcataa cccggatcgg gtattacata tgctgcgtag ccagtcggcg ctggaagtga
     2581 aagagcagca taaagccgcg ctgtggggct ttgtccaaca ggcgctggcg acgttttgcg
     2641 agaacccgga aaatctccat cagcctgcag tgcgaaaagt gctgggggat aatttgctaa
     2701 tggcgatggg ggcgatgctg gaagacgcgc aaccaatggt gacggcggaa agcatcagtc
     2761 atcagagtta ccgtagatta ctttcccgcg cccgtgaata tgtgctggaa aatatgtctg
     2821 agccggtgac ggtgctggac ttgtgtaatc aactgcatgt cagtcgccgc acgctacaaa
     2881 acgcgtttca cgctatttta ggcattggcc caaacgcgtg gctgaaacgc attcgcctga
     2941 acgccgtacg ccgcgaactg ataagcccgt ggtcgcaaag cacaacggta aaagacgccg
     3001 ccatgcagtg gggattctgg catctggggc aatttgtcac ggattaccag cagctgtttg
     3061 ccgagaagcc gtcgttgacg ttgcatcagc ggatgcggga atgggggtga gggagttaca
     3121 cccaatccct gaccttaata aactcactta acgccgcttc tgggctgcca tcttttggct
     3181 gataatcata ctcccagcgt accagtggcg gcattgacat caggatcgac tcggtgcgcc
     3241 cgccagtttg caggccaaac agagtgccgc gatcccagac cagattgaac tcgacataac
     3301 gaccgcgacg gtagagctga aaattgcgct cgcgctcgcc gtaggccatt gctttacgtc
     3361 gctctacaat tggtaaataa gcgtcggtgt agcctttgcc taccgcctgc ataaaggcaa
     3421 aacagtggtc gaaatctggc gtgttcagat catcaaagaa cagcccgcca ataccgcgct
     3481 gttcgttgcg atgtttgagg tagaagtaat cgtcgcacca ctttttgtaa cggggataaa
     3541 cgtcttcacc aaatggcagg cacaggtcac gggcggtgcg gtgccagtga atggcgtctt
     3601 cttcaaaacc atagaaaggg gttaaatcga agccgccgcc aaaccaccag acgggctctg
     3661 cacccggttt ttcggcaata aaaaaacgca cattcgcgtg gctggtggga acatacgggt
     3721 tatgcggatg cactaccagt gaaacgccca tcgcctcgaa actgcgcccg gcaagttccg
     3781 ggcgatgagc ggtggcggaa gcaggcatcg cctcgccgtg gacgtgagaa aagttgacgc
     3841 ctgcctgttc gaaaacacca ccattacgca acacccgact acgcccgccg ccgccagctt
     3901 cgcgctgcca actatcttcg acaaattctg cgccatcgac ggcggtcagc tgctgacaaa
     3961 tcgtatcctg aaggttgagc agaaactgtt taacctggtg tgcgtcgggt ttcataactt
     4021 atcgcttttt cgaatgtgct ttctggttgt cgaaccagtg gaaataactg atcacgcctt
     4081 cagcaatcgc tgtggcgatt ttctgacgaa acgccgccgt gcctaacagc cgctcttctt
     4141 ccgggttggt gataaacgag gtttccacca gcaccgaagg aaccgacggc gatttcaaca
     4201 ccacaaacgc ggcttgttcg gtgttgcggc tgtgcagttt atgcaccggc ttaatctttt
     4261 tcagaatatg cgagccaagc gtcaggctgt ttttaatagt atcggtttgc accagatcaa
     4321 acagcacttg ctgcaatagg tgatccttgt cagtcgcctt tttaccggca acttcatcgg
     4381 cgcggttttc gcgttcagac aggtatttcg ccattgcgct acttgcccca cggttagaga
     4441 gggcaaatac cgaagcaccg gcagctttcg ggttggtaaa gccatcggca tgaattgaca
     4501 taaacagatc tgcgccatgt ttatgggcga tttcaacgcg atcgtaaagt gggataaacg
     4561 tatcgccaga acgcgttaaa cgcgcatcaa tcccatgatt acgcaaaatg gaacggacgt
     4621 ttttagcaat cgccagcacc acatgttttt ctttcgaacc gttgcgtccg atcgctccgg
     4681 tatcaattcc gccgtggcct ggatcgagaa caacgacacg tttgccgcca gattttttgg
     4741 ctttcggctt gctgtgtccg ttgctggttt ttaaaggttc gtctttggcg atggcttgcg
     4801 acattcctga caacgtcagg gcagccaaac cggctttcag cacctggcgg cgcgaagtga
     4861 gtgtttttag tggtttaaaa gtgctcatac ggcctgagtt gtaataataa agttccagat
     4921 gttatatcgt atcgcgtaat ccgttacgac ggtttgatgt tgagaattgt tttacttttc
     4981 atttcaatag ttgacaactc cccattatgc cactttttca accgattttc gtcagatatt
     5041 ggctaattct accgttcacg ccataatcag ccttttaacc cgcaaaaagg taacgaatac
     5101 catggagata cgcgtatttc gccaggaaga tttcgaagag gtcatcaccc tttgggagcg
     5161 ttgcgacttg ctgcgtccgt ggaacgatcc ggaaatggac atcgagcgta agatgaacca
     5221 tgacgtcagt ttgtttttgg tcgctgaggt gaacggtgaa gtggtcggaa cggtgatggg
     5281 cggttatgac gggcatcgcg ggtctgctta ttatcttggc gtgcatccag agtttcgtgg
     5341 gcgtgggatt gccaatgcgt tgcttaatcg gctggagaaa aagctgattg ctcgtggctg
     5401 cccgaaaatt cagatcaatg tgccggaaga taacgacatg gtgctcggaa tgtatgaacg
     5461 cctgggatat gaacacgccg acatgctgag tctgggtaag cgtttgattg aagatgaaga
     5521 gtactgagtt ccatcctgtc cattatgatg cgcacggacg cctgcgttta cccttgctct
     5581 tctggcttgt gctattgctt caggcgcgaa cctgggtgct gtttatcatt gccggtgcgt
     5641 cgcgcgagca gggtactgcg ctgctaaatc tgttttatcc cgatcacgat aatttctggc
     5701 tggggttgat tcccggtatt ccggcggtgc tggcgttttt gttgagcggt cggcgggctt
     5761 cgtttcctcg cacctggcat gtgctctatt ttctgttgct gttggcgcag gtggttttac
     5821 tttgctggca accgtggctg tggctgaacg gtgaatccgt tagcggtatc ggtctggcgc
     5881 tggtagtggc ggatattgtg gcgttaatct ggctgctgac caatcgacgt ttacgcgctt
     5941 gttttaatga agaaaaagaa taacgcagag gtgcgctttg tttatgccgg atgcggcgtg
     6001 aacgccttat ccggcctaca aaacatcgaa aattcaatat attgcaggag aaagtaggcc
     6061 tgataagcgt agcgcatcag gcaattttgt gtttgtcatc aacctttaac ggcacttttt
     6121 ggtgaatttg cactccaagc aacgttattg aataaccaaa ggaagtgaca tgaaatcgct
     6181 gcgtttaatg ttatgcgcta tgccgttgat gctgaccggc tgttccacga tgtcgtcagt
     6241 taactggtcg gctgctaacc cgtggaactg gtttggatcg tccaccaaag tgagcgagca
     6301 gggtgtgggt gaattaacgg cgtccacacc actgcaagaa caagccattg ctgatgcgct
     6361 tgatggcgat tatcgcctgc gcagcggaat gaaaaccgcg aacggcaacg tggtgcgctt
     6421 ttttgaagtg atgaaaggcg acaacgtggc gatggtgatt aacggcgatc aaggcacgat
     6481 cagtcgcatt gacgtgctgg atagcgatat tcctgctgac accggtgtta aaatcggtac
     6541 accgtttagc gacctttaca gcaaagcatt tggcaattgc caaaaagctg atggtgatga
     6601 taatcgtgcc gtcgaatgta aagccgaagg cagtcaacat attagctacc agttcagagg
     6661 ggaatggcgt ggtcctgaag ggttaatgcc ttcggacgat accctgaaaa actggaaagt
     6721 cagtaaaatt atctggcggc gttaatttgc gtctgaacaa accgccgccg cgaaaaaaca
     6781 cgtaaaatag cgctcaacaa tgccacggat tgcgtggcat tcttattttc aggaggaaca
     6841 atgtctcagg ttcagagtgg cattttgcca gaacattgcc gcgcggcgat ttggatcgaa
     6901 gccaacgtga aaggggaagt tgacgccctg cgtgcggcca gtaaaacatt tgccgacaaa
     6961 ctggcaactt ttgaagcgaa attcccggac gcgcatcttg gtgcggtggt tgcctttggt
     7021 aacaacacct ggcgcgctct gagcggcggc gttggggcag aagagctgaa agattttccg
     7081 ggctacggta aaggccttgc gccgacgacc cagttcgatg tgttgatcca cattctttct
     7141 ctgcgtcacg acgtaaactt ctctgtcgct caggcggcga tggaagcctt tggtgactgc
     7201 attgaagtga aagaagagat ccacggcttc cgttgggtgg aagagcgtga cctgagcggc
     7261 tttgttgacg gtacagaaaa cccggcgggt gaagagacgc gccgcgaagt ggcggttatc
     7321 aaagacggcg tggatgccgg cggcagctat gtgtttgtgc agcgttggga gcacaacctg
     7381 aagcagctca accggatgag cgttcacgat caggagatga tgatcgggcg caccaaagag
     7441 gccaacgaag agattgacgg cgacgaacgt ccggaaacct ctcacctcac ccgcgttgat
     7501 ctgaaagaag atggcaaagg gctgaagatt gttcgccaga gcctgccgta cggcaccgcc
     7561 agtggcactc acggtctgta cttctgcgcc tactgcgcgc gtctgcataa cattgagcag
     7621 caactgctga gcatgtttgg cgataccgat ggtaagcgtg atgcgatgtt gcgcttcacc
     7681 aaaccggtaa ccggcggcta ttacttcgcg ccgtcgctgg acaagctgat ggcgctgtaa
     7741 gcgtttctga ttctatgatt aaaggccagc cagtaacaaa actgactggc ctttttatta
     7801 cttttgcttc aacgccgcat acacctgatc aactacccaa ccataagttg caatcggtaa
     7861 ctgaccgctt tcgaacatat tgggattttt ttgtggatcg gcaactggcg aatggggctt
     7921 gttgcttaac atcacaatcg ccatatgatt gaccggatcg ataacggtta ctgtcccggt
     7981 ccagccagtg tgaccgtagg tttgcgggct tgccagcgtg ccaaacgtcg gcgtcatggt
     8041 ggcattacca ttcacgcgcc agccgaggcc aaaagtggca tcttccttag agctggtggt
     8101 gaacatcttc accgtttccg cactgaacag ctgcacatcg ccatagcccc cgccgttcag
     8161 catcgtttgc attaacaccg caatatcgcc ggtattggaa aacaaacctg cgtgcccgga
     8221 aacgccgccc atcgaataaa aggctttttc atcgtgcacc tgaccccaga gagtggaggt
     8281 gcggatattc gggaaatgga tcacgccatc gcgggtattg ccgttcaatt ccgtggcggc
     8341 aatttgttgc ggtttaaagc ctttcagcag cgggttaaat accgtatgtg tcaggccgag
     8401 cgggcgataa atcgactctt caacatagcg gtcaagcggc tgaccggtaa ccgactcgac
     8461 gataaatcca agcagcatat aatcgacatc gctgtagata tgtttgctgc cgggctgata
     8521 ttccagcggc gtgcgcttga tcatctccag cgtctggcct ttatcctagg aatataacgc
     8581 gcccgcgacc gctttattcg ggtattgcgg atctgccggg aaaccgccgc tgtgatgcag
     8641 caggtcagaa atccgcaggg tgtttttgcc tttaatggtg tcatttggac tatcggcaaa
     8701 ccccggaata tatttcgcaa tccgatcgtc aggatgcagt ttgccttcgc tcatcagctt
     8761 ttgcagggcg aagttcgtgg cgtacatttt ggtgtttgag gccaggtcat acagcgtccc
     8821 ggtggtggct ttgacaggct gttccatcaa cacgctgcca tcgtactttt tcgccgctcc
     8881 ccaggctttg cgatacacaa tctgattatc tttaatgatc agcaggttta cgccgggata
     8941 accggcatca acttgctggc taatccagcg atccatctgg ttaagccgtt tgacgttaaa
     9001 ccctgctttc tctggcgagc tttctgtcag aacagggtat tttgcggcgc tgacgctaca
     9061 actaacagcc agcagagaaa gatagagcat tgtccgtttc atgatatcag tccagattga
     9121 cgttacggca gccaaagagc gtggtgaaaa taaacccgca aacccatgcc accagaatcc
     9181 cgccagcata aaccgccatg gccggaagga tgccttgtgc ggaagtcatc agcggcagcg
     9241 ctaccagacc agacggccca aaggcgctgt ttaagcccat cggcagaccc caccaggcta
     9301 tcaggccgat aaacaaaccg cccgccgcac cgcctaaaca ggcggtgaca aacggcttca
     9361 tgcggggcag ggtgacaccg taaatcagcg gttcaccaac gcccagcagg ccgggaataa
     9421 tcgccccgcg tacctgactg cgtagcgcac tgtgcggttg cgaccgccag tagagtgcca
     9481 gcgccgcgcc cacctggccc gcgcctgcca ttgaaaggat gggaaataag ctgttgaatc
     9541 cctggctgtc cattaacgcg aggtaaacag gaataaagcc ctgatgcacg ccaaatacca
     9601 cggcgatcag gaacagcccg gctaaaaccg cacaaccgaa cggattactg ttcaggtgca
     9661 taaacagcca tgacatacct tcgaataacc agccacccag cggcataatg atcaggtacg
     9721 caagcgtagc ggtgatcagc agggtgatta acgaggtcag cagcatgtcg agatcgtccg
     9781 gcataaagcg gcgcaccatg ccttcaatgc gggcgcaggc ccacgcggca atcagcacgc
     9841 cgataatatt gccgcgcgga tcgatgggca gaccaaagaa atcgtgaaaa ccggcgtagt
     9901 aaccggtggt tgcagcgggg ttataaccga gcaaaaagag tgcggcaata attgcgccat
     9961 tgacgcccgt gccgccaaat gcctgggcgg cgttatagcc caccagaatc accaggaagg
    10021 tgaacaaacc tttgctgaac accttcataa aattcagcgc gtcgggtagc gtgccctgag
    10081 catctgccgg aacgtgcatc accgtggcaa ttaacgtcgc tatccccagc agcagaccgg
    10141 cggcaataaa accggggatc agcggcgtga agatggtggc gaatttggcg agaaattgtt
    10201 gcacgccgga ggtttgtttg gcttttaact gacgtttgtt ctgggcggcg atttctgcgg
    10261 catcctgtac cggtgcctcg cccagcagct cgctcatcgc ttttgcggca cgatgcgctt
    10321 taccaggtcc aaaaacgacc tgcacctggt cgctggtcaa aatgacgctc ttcacgcctt
    10381 ccagcgtttt gatattggga tcaaccagtg aactgtcatg tacacccaga cgcaggcgcg
    10441 tcatacagtt accacaactg gcgatatttc ccggtccgcc gacacgggta agaatggtgt
    10501 tcagaagttc actgctgatc tctttggcca tgggttattc cttgtctaaa acctgacgaa
    10561 taaagccgcc gtgttgatcc aggcgttttt tagcttctgc ggcatcgaga tttttcagca
    10621 ccatcacaat ggccgtttta cagttgcgct cgcaggcaat taacgccgct tccgcttgtt
    10681 cggcattaca tccggtggcg tttttaacga tattgacctg gcgcacatgc agtttttcgt
    10741 tggtggcgac cacatcgacc ataaggttgc cgaacacttt gccggattta atcatcagcc
    10801 cggtggaaag catattgagc accagtttct gcgctgtacc tgctttcatc cgcgaagaac
    10861 cggtaacaac ttcggcacct acaatcggtg taatggcaaa ctcagcggtg gttgaaacgg
    10921 cgctccccgg attacaggaa attcccactg tgcggcagcc gagctggcgt gcgtattcca
    10981 gtccggcaat cacatacggc gtgcgaccgc tggcagcaat gccaaccacc acatcctgtg
    11041 ccgttaaatt aatatttttc agatcattaa caccgccttc ccggctatct tccgcgcctt
    11101 ccaccgcgtg ctgaatggca tattcgccgc cagcaatcaa accaaccacc agacccggtt
    11161 tcacgccgta ggtgggcgga cattcgctgg catccagaat ccccagacga ccggatgttc
    11221 ccgcaccgag gtaaatcaga cgcccgccgc cgcttacctg ggcgtggata acatcgatcg
    11281 ccgcggcgat atccggcagt acgcgctcaa cggcaagcgg tacggtttta tcttcatcgt
    11341 tgataatccg gcacatttcc agcgttgata cgcggtcaat ttcagccgag gcggcgttcg
    11401 agccttcagt aatcatcttt tcaagttgca tcggtggtga ccttactatt tacgatcaaa
    11461 taattgcaga tgtatggaat catatatcct gaattgacag acttaaagga atcattgagt
    11521 ctacactcgc agagtgtgaa gagcgtcata agaacttaag cggaatttat gctgccagcc
    11581 caggagagtg gaagatgttg tacctgacga aaataagcaa tgcggggagt gaattcaccg
    11641 aaaacgagca aaaaatcgct gactttctgc aggccaacgt gagtgagctg caatccgttt
    11701 cttcacggca gatggcgaaa cagctcggca ttagccagtc gagcatagtg aaatttgccc
    11761 aaaaactcgg cgcgcaagga tttactgaat tgcgtatggc gttaataggc gaatacagtg
    11821 ctagccggga gaaaacgaat accacggcgc tgcacctgca cagttcgatt accagtgatg
    11881 attcgctgga agtgattgcc cgcaaattga atcgcgaaaa agagctggcg ctggagcaaa
    11941 cctgtgcgtt gttcgactac gcgcggctgc aaaaaatcat tgaggtcatc agtaaagcac
    12001 cgtttatcca gataacgggc ctgggcggat cggcgctggt ggggcgcgat ctgtcgttca
    12061 aactgatgaa aattggctat cgcgtggcct gcgaagccga cacgcacgta caagccaccg
    12121 tttcccaggc gttgaaaaaa ggcgatgtac aaatcgctat ctcttacagc ggtagtaaaa
    12181 aagagattgt cttgtgcgta gaagcggcac gaaagcaggg ggcaacggtg attgccatta
    12241 cttctctggc tgactctccg ctgcggcggc tggcgcattt cacgctcgat accgtttccg
    12301 gtgaaaccga atggcgtagc tcgtcgatgt ctacccgcac ggcgcaaaat tctgttaccg
    12361 atttactgtt tgttggtctt gtgcaactca atgatgtggc gtcattgaaa atgattcagc
    12421 gcagcagtga gctaacacaa cgcctgaaat gatgcataaa gcagcgactg gattgagatt
    12481 ttcctgaatt agtgagctga tccgcagcaa tattttgttt atcctgtatt ttcagaggga
    12541 atggagtgta acgctctgta ttaacaagga gagcattaaa atgggtaaac tcacgggcaa
    12601 gacagcactg attacgggcg cattgcaggg aattggcgaa ggaattgcca gaacttttgc
    12661 acgtcatggc gcgaacctaa tcttgctgga tatctcccct gagatcgaaa agctggcgga
    12721 cgaactgtgt ggtcgtggtc atcgctgtac ggcggttgtc gccgatgtgc gtgacccggc
    12781 gtcggtagcc gcagctatca aacgcgcgaa ggaaaaagaa gggcgcattg atatcctggt
    12841 gaataacgca ggcgtttgtc gtctgggcag tttcctcgat atgagcgatg acgatcgcga
    12901 tttccatatt gatatcaata ttaaaggcgt atggaacgtc acgaaggcgg tgctgccgga
    12961 gatgattgcg cgcaaagatg gtcgcattgt gatgatgtct tcagtcactg gtgatatggt
    13021 ggccgatcct ggcgaaacgg cgtacgcctt aacgaaagcg gcgattgttg gcctgacaaa
    13081 atcgctggcg gtggagtacg cgcagtctgg tattcgcgtt aacgccattt gcccgggata
    13141 cgtgcgcaca ccaatggcgg aaagcattgc ccgccagtcg aacccggaag atccagagtc
    13201 ggtgctgact gaaatggcga aagcaatccc gatgcgtcgc ctcgccgatc cgctggaagt
    13261 cggcgaactg gcggccttcc tcgcatcgga tgaatccagc tatttaaccg gtacacagaa
    13321 tgtgattgat ggcggcagca cactgccgga gacggttagc gtcggtatct gattcacctc
    13381 tgtttcctcc ctgcatgtgt ggggaggatt tcgtcttgaa ctaagttcac caggctattt
    13441 tatttgtcat tttggccccg ggcagtgctc gaaatactca cgtactatgt gtacgctccg
    13501 gtttctccgc gctgtccgtg tccaaactgc ccgcaacaat tacgcctgtt gaaccaagtt
    13561 cttattccct ttttaacttc caaatcacca aacggtatat aaaaccgtta ctcctttcac
    13621 gtccgttata aatatgatgg ctattagaaa gtcattaaat ttataagggt gcgcaatggc
    13681 cgttaactta ctgaaaaaga actcactcgc gctggtcgct tctctgctgc tggcgggcca
    13741 tgtacaggca acggaactgc tgaacagttc ttatgacgtc tcccgcgagc tgtttgccgc
    13801 cctgaatccg ccgtttgaac agcaatgggc aaaagataac ggcggcgaca aactgacgat
    13861 aaaacaatct catgccgggt catcaaaaca ggcgctggca attttgcagg gcttaaaaac
    13921 cgacgttgtc acttataacc aggtgaccga cgtacaaatt ctgcacgaca aaggcaagct
    13981 gatcccggct gactggcagt cgcgcctgcc gaataatagc tcgccgttct actccaccat
    14041 gggcttcctg gtgcgtaagg gcaacccgaa gaatatccac gactggaacg acctggtgcg
    14101 ctccgacgtg aagctgattt tcccgaaccc gaaaacgtcg ggtaacgcgc gttataccta
    14161 tctggcggca tggggcgcag cggataaagc tgacggtggc gacaaagcca aaaccgaaca
    14221 gtttatgacc cagttcctga aaaacgttga agtgttcgat actggcggtc gtggcgcgac
    14281 caccactttt gccgagcgcg gcctgggcga tgtactgatc agcttcgagt cggaagtgaa
    14341 caacatccgt aaacagtatg aagcgcaagg ctttgaagtg gtgattccga aaaccaacat
    14401 tctggcggaa ttcccggtgg cgtgggtcga taaaaacgtg caggccaacg gtacggaaaa
    14461 agcagcaaaa gcctacctga actggctcta cagcccgcag gcgcagacca tcatcaccga
    14521 ctattactac cgcgtaaata acccggaagt catggacaaa ctgaaagata aattcccgca
    14581 gaccgagctg ttccgcgtgg aagacaaatt tggctcctgg ccggaagtga tgaaaaccca
    14641 cttcaccagc ggcggcgagt tagacaagct gttagcggcg gggcgtaact gatgtttgca
    14701 gtttcatcaa gacgcgtgct gccgggcttt accttaagcc tcggcaccag tctgctgttt
    14761 gtgtgcctga ttttgctgct gccgctctcc gcgctggtga tgcagctggc tcagatgagc
    14821 tgggcgcagt actgggaggt gatcaccaac ccacaagtgg tcgcggccta caaagtgacg
    14881 ctgctgtcgg cgtttgtggc atcgattttt aacggcgttt tcggtctgct gatggcgtgg
    14941 attttaacac gttatcgctt tccgggccgc acgctgcttg atgcgctgat ggatttaccc
    15001 tttgcgctgc caacggcagt cgccggttta acgctggcct cgctcttttc cgtaaacggt
    15061 ttttacggtg aatggctggc gaagtttgat atcaaagtca cctatacctg gcttggtatt
    15121 gcggtggcga tggcctttac cagcattccg tttgtggtgc gtaccgtgca gccggtgctg
    15181 gaagagttag gcccagaata tgaagaagcg gcggaaacgc ttggtgcaac gcgctggcag
    15241 agtttctgca aagtggtgct gccggaactt tctccagcgc tggtggcggg cgtggcgttg
    15301 tcgtttaccc gtagtcttgg tgagtttggc gcggtgatat ttatcgccgg gaacatcgct
    15361 tggaagacgg aagtgacgtc gctgatgatt tttgtgcgct tgcaggagtt tgattacccg
    15421 gcggcgagcg cgattgcttc ggtgatcctc gcggcatccc tgctgctgct gttctcaatt
    15481 aacactctgc aaagtcgctt tggtcggcgt gtggtaggtc attaatggcg gaagttaccc
    15541 aattgaagcg ttatgacgcg cgcccgatta actggggcaa atggtttctg attggcatcg
    15601 ggatgctggt atcggcgttc atcctgctgg tgccgatgat ttatatcttc gtacaggcgt
    15661 tcagcaaagg gctgatgccg gttttacaga atctggccga tccggacatg ctgcacgcca
    15721 tttggctgac ggtgatgatt gcgctgattg ccgtaccggt gaacctggtg ttcggcattc
    15781 tgctggcgtg gctggtaacg cgctttaact tccccggacg ccagttactg ctgacgctac
    15841 tggacattcc gtttgccgta tcgccggtag ttgccggtct ggtgtatctg ctgttctacg
    15901 gctctaacgg tccgctgggc ggctggctgg atgaacataa tttgcagatt atgttctcct
    15961 ggccgggaat ggtgctggtc accatctttg tgacctgtcc ttttgtggtg cgcgagctgg
    16021 tgccggtgat gttaagccag ggcagccagg aagacgaagc ggcgattttg cttggcgcgt
    16081 ctggctggca gatgttccgt cgcgtcacat tgccgaacat tcgctgggcg ctgctgtatg
    16141 gtgtggtgct aaccaacgcc cgcgcgattg gcgagtttgg tgcggtgtcg gtggtttccg
    16201 gctcgattcg cggcgaaaca ctttcgctgc cgttacagat tgaattgctg gagcaggact
    16261 acaacaccgt cggctccttt accgccgccg cgctgttgac gctgatggcg attatcaccc
    16321 tgtttttaaa gagtatgttg cagtggcgtc tggagaatca ggaaaaacgc gcgcagcagg
    16381 aggagcatca tgagcattga gattgccaat attaagaagt cgtttggtcg cacccaggtg
    16441 ctgaacgata tctcactgga tattccttct ggtcagatgg tcgcgctgct ggggccgtcc
    16501 ggttccggaa aaaccacgct gctgcgcatt attgccgggc tggagcatca aaccagcggg
    16561 catattcgct tccacggtac cgacgtgagc cgcctgcacg cacgcgatcg taaagtcggt
    16621 ttcgtgttcc agcattacgc gctgttccgt catatgacgg tgttcgacaa tatcgctttt
    16681 ggcctgacgg tgctgccacg tcgcgagcgc ccgaatgccg cagccatcaa agcgaaagtg
    16741 acaaaattgc tggagatggt ccagcttgcg catctggcgg atcgttatcc ggcacagctt
    16801 tccggcggcc agaaacagcg cgtggcgctg gcgcgcgcgc tggctgttga accgcaaatt
    16861 ctcctgcttg atgaaccgtt tggcgcgctg gatgcgcagg tgcgtaaaga gctgcgtcgc
    16921 tggctgcgtc aactgcatga agagctgaaa ttcaccagcg tgttcgtgac ccacgaccag
    16981 gaagaagcga ccgaagtagc tgatcgtgta gtggtgatga gccagggcaa tatcgagcag
    17041 gctgatgcgc cggaccaggt atggcgcgaa ccagcgaccc gatttgtgct cgaatttatg
    17101 ggcgaagtga accgcctgca gggaaccatt cgcggcgggc agttccatgt tggcgcacat
    17161 cgctggccgc tggggtatac gcctgcgtat caggggccgg tggatctctt cctgcgcccg
    17221 tgggaagtgg atatcagccg ccgtaccagt ctcgattcgc cgctgccggt acaggtactg
    17281 gaagccagcc cgaaaggtca ctacacccaa ttagtggtgc agccgctggg gtggtacaac
    17341 gaaccgctga cggtcgtgat gcatggcgac gatgccccgc agcgtggcga gcgtttattc
    17401 gttggtctgc aacatgcgcg gctgtataac ggcgacgagc gtatcgaaac ccgagatgag
    17461 gaacttgctc tcgcacaaag cgcctgatag gttgagtgaa tgttaaacgc ccggaggcgc
    17521 ttcccgcgat ccgggctttt taatggcaag gtttgtaacc tgtagacctg ataagacgcg
    17581 caagcgtcgc atcaggcaac accacgtatg gatagagatc gtgagtacat tagaacaaac
    17641 aataggcaat acgcctctga taaagttgca gcgaatgggg ccgaataacg gcagtgaagt
    17701 ctggttgaaa ctggaaggca ataacccggc aggttcggtg aaagatcgtg cggcactttc
    17761 gatgatcgtc gaggcggaaa agcgcgggga aattaaaccg ggtgatgtgt taatcgaagc
    17821 caccagtggt aacaccggca ttgcgctggc aatgattgcc gcgcttaaag gctatcgcat
    17881 gaaattgctg atgcccgaca acatgagcca ggaacgccgt gcggcgatgc gtgcttatgg
    17941 tgcggaactg attcttgtca ccaaagagca gggcatggaa ggtgcgcgcg atctggcgct
    18001 ggagatggcg aatcgtggcg aaggaaagct gctcgatcag ttcaataatc ccgataaccc
    18061 ttacgcccat tacaccacta ccgggccgga aatctggcag caaaccggcg ggcgcattac
    18121 ccattttgtc tccagcatgg gaacaaccgg cactatcacc ggcgtttcac gctttatgcg
    18181 cgaacaatcc aaaccggtga ccattgtcgg cctgcagccg gaagaaggca gcagtattcc
    18241 cggcattcgc cgctggcctg cggaatatct gccggggatt ttcaacgctt ctctggtgga
    18301 tgaggtgctg gatattcatc agcgcgatgc ggaaaacacc atgcgcgaac tggcggtgcg
    18361 ggaaggaata ttctgtggcg tcagctcagg cggcgcggtt gctggagcac tgcgggtggc
    18421 aaaagctaac cctggtgcgg tggtggtagc gatcatctgc gatcgtggcg atcgctacct
    18481 ctccaccgga gtgtttgggg aagagcattt tagccagggg gcggggattt aagattattg
    18541 cgcaggcacc gttttatccg tctgcgcaat tagcgcatgt aaaaaaggct gtgcgttctc
    18601 atcgctctta ccggggatct tcacaatata cggcttcccg gtaatcgatg acgacgaagc
    18661 aaccttatca ataaactgct cggcagtgtc aatgcggtta cgggtattgc cgagcttcag
    18721 acgcagatga gaaaccgctt catcgcaggt atgttcatca ccgttgcgca caaatatcaa
    18781 atcctttttc tgtgataatc cctccagcat ggcgttgatg cgggcttctt catgggcagt
    18841 taacttcgcg taagcgggga gtgtcattag tagtgtaatg accagacaaa tgattttctt
    18901 cattgaatta ccttatcctt gttttgtaat agccgatttg actgccagaa tcaggtaaag
    18961 tttcggttgg aatacgatga ggatcatcgg caaggagaaa aaattaaatg agtagtttgt
    19021 tgttgtttaa cgataagagc agggcgctgc aggcggatat cgtcgccgtg cagtcgcagg
    19081 tggtttacgg cagcgtgggc aacagcattg ccgtgcctgc tatcaaacag aacggtctga
    19141 atgtttttgc cgtgccgacg gtattgctga gcaatacgcc gcattatgac actttctacg
    19201 gtggtgcgat tccggatgaa tggtttagcg gttatttgcg tgcgcttcag gagcgtgatg
    19261 cgctgcgcca gctgcgcgct gtaaccacgg gctatatggg aacggcatcg caaatcaaaa
    19321 tccttgccga gtggctgact gcgctacgca aagaccatcc tgacctattg atcatggtcg
    19381 atccggtgat tggcgatatt gatagcggaa tttatgtcaa acctgacctt cccgaggcgt
    19441 atcgacaata tttactgccg ctggcgcagg gaattacccc caatatcttt gagctggaaa
    19501 tcctgaccgg taaaaattgc cgcgatctcg acagtgccat tgctgccgca aaaagtctgc
    19561 tttcagacac attaaaatgg gtggtgatta ccagcgcctc cggtaatgaa gaaaatcagg
    19621 agatgcaggt ggtggtggtc agtgccgaca gcgtgaatgt catttcccat tcacgggtaa
    19681 aaaccgacct gaaagggact ggcgacctgt tttgtgctca gcttatcagt ggtttgctga
    19741 aagggaaggc gttaaacgat gcggtgcacc gtgcggggtt gcgcgtactg gaagtgatgc
    19801 gctacaccca gcagcatgag agcgatgaat tgattttgcc gccgctggcg gaagcataaa
    19861 aaatggcgcc gatgg
//
LOCUS       DADMJB010000067        19773 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.067, whole genome shotgun sequence.
ACCESSION   DADMJB010000067 DADMJB010000000
VERSION     DADMJB010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19773)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19773)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19773
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.067"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            49..993
                     /locus_tag="JN078_002123"
     CDS             49..993
                     /locus_tag="JN078_002123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000261200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HAY9041326.1"
                     /translation="MVVMIHTTTWYVTNAHSVSPVTWDIANVLNSASRVSVPLFFMIS
                     GYLFFGERSAQPRHFLRIGLCLIFYSAIALLYIALFTSINMELALKNLLQKPVFYHLW
                     FFFAIAVIYLVSPLIQVKNVGGKMLLVLMAVIGIIANPNTVPQKIDGFEWLPINLYIN
                     GDTFYYILYGMLGRAIGMMDTQHKALSWVSAALFATGVFIISRGTLYELQWRGNFADT
                     WYLYCGPMVFICAIALLTLVKNTLDTRTIRGLGLISRHSLGIYGFHALIIHALRTRGI
                     ELKNWPILDIIWIFCATLAASLLLSMLVQRIDRNRLVS"
     gene            complement(1035..1472)
                     /locus_tag="JN078_002124"
     CDS             complement(1035..1472)
                     /locus_tag="JN078_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312472.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiaB family inner membrane protein"
                     /protein_id="HAY9041327.1"
                     /translation="MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYY
                     FAVLVLGLFSAASYQKTVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLS
                     EKGFYGLAFFLSLFGAVAVQKNIRDAGINPPKETQVTQEEYSE"
     gene            complement(1518..1859)
                     /locus_tag="JN078_002125"
     CDS             complement(1518..1859)
                     /locus_tag="JN078_002125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709350.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041328.1"
                     /translation="MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTAT
                     FGNYAYLRAEKLGQLDNFFTHICQLVALITIGLLFIGVLNAPINAYEMVIYPIAFFVC
                     LFGQMRLFRSV"
     gene            complement(2024..2215)
                     /locus_tag="JN078_002126"
     CDS             complement(2024..2215)
                     /locus_tag="JN078_002126"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041329.1"
                     /translation="MGPALGAARLAQIAANPEKSLIELLPQLPLEQSHLPDAQRYAAY
                     QPRRETFRRLYQQLLPLMA"
     gene            complement(2148..3467)
                     /gene="xylB"
                     /locus_tag="JN078_002127"
     CDS             complement(2148..3467)
                     /gene="xylB"
                     /locus_tag="JN078_002127"
                     /EC_number="2.7.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005054141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylulokinase"
                     /protein_id="HAY9041330.1"
                     /translation="MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQD
                     PEQWWQATDRAMKALGDQHSLQDVKALGIAGQMHGATLLDAQQRVLRPAILWNDGRCA
                     QECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRM
                     TGEFASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAK
                     AWGMATVPVVAGGGDNAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCH
                     ALPQRWHLMSVMLSAASCLDWVAKLTGLCNVPALIAAAQQADESAEPVWFLPYLSGER
                     TPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGG
                     GARSEYWRQMLADISGQQLDYRTGGCGASTGRSKAGADCGESREIAH"
     gene            complement(3584..4861)
                     /gene="xylA"
                     /locus_tag="JN078_002128"
     CDS             complement(3584..4861)
                     /gene="xylA"
                     /locus_tag="JN078_002128"
                     /EC_number="5.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HAY9041331.1"
                     /translation="MQAYFDQLDRVRYEGSKSSNPLAFRHYNPDELVLGKRMEEHLRF
                     AACYWHTFCWNGADMFGVGAFNRPWQQPGEALALAKRKADVAFEFFHKLHVSFYCFHD
                     VDVSPEGASLKEYINNFAQMVDVLAAKQEESGVKLLWGTANCFTNPRYGAGAATNPDP
                     EVFSWAATQVVTAMEATHKLGGENYVLWGGREGYETLLNTDLRQEREQLGRFMQMVVE
                     HKHKIGFQGTLLIEPKPQEPTKHQYDYDAATVYGFLKQFGLEKEIKLNIEANHATLAG
                     HSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTG
                     GLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNS
                     ELGQQILKGQMSLADLAKYAQEHNLSPVHQSGR"
     gene            5227..6198
                     /gene="xylF"
                     /locus_tag="JN078_002129"
     CDS             5227..6198
                     /gene="xylF"
                     /locus_tag="JN078_002129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY9041332.1"
                     /translation="MKIKNILLTLCTSLLLTNVAAHAKEIKIGMAIDDLRLERWQKDR
                     DIFVKKAESLGAKVFVQSANGNGETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEA
                     KQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNN
                     AKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALTANNNKIDAVVASNDATAGG
                     AIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGN
                     GQEPKADTSLNNGLKDVPSRLLTPIDVNKNNIKDTVIKDGFHKESEL"
     gene            6276..7817
                     /gene="xylG"
                     /locus_tag="JN078_002130"
     CDS             6276..7817
                     /gene="xylG"
                     /locus_tag="JN078_002130"
                     /EC_number="7.5.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter ATP-binding protein"
                     /protein_id="HAY9041333.1"
                     /translation="MPYLLEMKNITKTFGSVKAIDNVSLRLNAGEIVSLCGENGSGKS
                     TLMKVLCGIYPHGSYEGEIIFAGEEIQASHIRDTERKGIAIIHQELALVKELTVLENI
                     FLGNEITHNGIMDYDLMTLRCQKLLAQVSLSISPDTRVGDLGLGQQQLVEIAKALNKQ
                     VRLLILDEPTASLTEQETSVLLDIIRDLQQHGIACIYISHKLNEVKAISDTICVIRDG
                     QHIGTRDAAGMSEDDIITMMVGRELTALYPNEPHTTGDEILRIEHLTAWHPVNRHIKR
                     VNDVSFSLKRGEILGIAGLVGAGRTETIQCLFGVWPGQWEGKIYIDGKQVDIRNCQQA
                     IAQGIAMVPEDRKRDGIVPVMAVGKNITLAALNKFTGGISQLDDAAEQKCILESIQQL
                     KVKTSSPDLAIGRLSGGNQQKAILARCLLLNPRILILDEPTRGIDIGAKYEIYKLINQ
                     LVQQGIAVIVISSELPEVLGLSDRVLVMHEGKLKANLINHNLTQEQVMEAALRSEHHV
                     EKQSV"
     gene            7795..8976
                     /gene="xylH"
                     /locus_tag="JN078_002131"
     CDS             7795..8976
                     /gene="xylH"
                     /locus_tag="JN078_002131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose ABC transporter permease XylH"
                     /protein_id="HAY9041334.1"
                     /translation="MSKSNPSEVKLAVPTSGGFSGLKSLNLQVFVMIAAIIAIMLFFT
                     WTTDGAYLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAICD
                     VWLGWPLPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGT
                     TVSPTSAAMSQIGQSYLPASTGFIIGALGLMAFVGWQWRGRMRRQALGLQSPASTAVV
                     GRQALTAIIVLGAIWLLNDYRGVPTPVLLLTLLLLGGMFMATRTAFGRRIYAIGGNLE
                     AARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGG
                     TSLAGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLAVWMDSATKRR
                     S"
     gene            9054..10232
                     /locus_tag="JN078_002132"
     CDS             9054..10232
                     /locus_tag="JN078_002132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XylR family transcriptional regulator"
                     /protein_id="HAY9041335.1"
                     /translation="MFTKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEED
                     FRARIDKIKDWLGDGVIADFDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATD
                     NYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGL
                     ETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHILQVCEHLHIPVPEKLCVIGI
                     DNEELTRYLSRVALSSVAQGARQMGYQAAKLLHRLLDKEEMPLQRILVPPVRVIERRS
                     TDYRSLTDPAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEEVGETIHAMI
                     HAEKLEKARSLLISTTLSINEISQMCGYPSLQYFYSVFKKAYDTTPKEYRDVNREVML
                     "
     gene            complement(10340..11164)
                     /locus_tag="JN078_002133"
     CDS             complement(10340..11164)
                     /locus_tag="JN078_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein bax"
                     /protein_id="HAY9041336.1"
                     /translation="MILTPIRRYGAMILMLLTLVFSSEVLAKTHTTTASQKSHLTKAS
                     NKQVSSKQEYSRNSAKSSSLPDLRKYPSGTPRKKAFLRTVMPYITSQNAAITAERNWL
                     ISKQYQGQWSPAERARLKDIAKRYKVKWSGNTRKIPWNTLLERVDIIPTSMVATMAAA
                     ESGWGTSKLARNNNNLFGMKCMKGRCTNAPGKVKGYSQFSSVKESVSAYVTNLNTHPA
                     YSSFRKSRAQLRKADQEVTATAMIHKLKGYSTKGKSYNNYLFAMYQDNQRLIAAHM"
     gene            11484..13514
                     /gene="malS"
                     /locus_tag="JN078_002134"
     CDS             11484..13514
                     /gene="malS"
                     /locus_tag="JN078_002134"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HAY9041337.1"
                     /translation="MKLASCFLTLLPGFAVAASWTSPGFPAFSEQGTGTFVSHAQLPK
                     GTRPLTLNFDQQCWQPADAIKLNQMLSLQPCSNTPPQWRLFRDGKYTLQIDTRSGTPT
                     LMISIQNAAEPVANLVRECPKWDGLPLTLDVSATFPEGAAVRDYYSQQIAIVKNGQIT
                     LQPAATSNGLLLLERAETDTSAPFDWHNATVYFVLTDRFENGDPSNDQSYGRHKDGMA
                     EIGTFHGGDLRGLINKLDYLQQLGVNALWISAPFEQIHGWVGGGTKGDFPHYAYHGYY
                     TQDWTNLDANMGNEADLRTLVDSAHQRGIRILFDVVMNHTGYATLADMQEYQFGALYL
                     SGDEVKKTLGERWSDWKPAAGQTWHSFNDYINFSDKTGWDKWWGKNWIRTDIGDYDNP
                     GFDDLTMSLAFLPDIKTESTTASGLPVFYKNKTDTHAKVIEGFTPRDYLTHWLSQWVR
                     DYGIDGFRVDTAKHVELPAWQQLKTEASSALREWKKTNPDKALDDKPFWMTGEAWGHG
                     VMQSDYYRHGFDAMINFDYQEQAAKAVDCLAQMDTTWQQMAEKLQGFNVLSYLSSHDT
                     RLFREGGDKAAELLLLAPGAVQIFYGDESSRPFGPTGSDPLQGTRSDMNWQDVSGKSA
                     ANVAHWQKISQFRARHPAIGAGKQTTLSLKQGYGFVREHGDDKVLVIWAGQQ"
     gene            13692..14945
                     /gene="avtA"
                     /locus_tag="JN078_002135"
     CDS             13692..14945
                     /gene="avtA"
                     /locus_tag="JN078_002135"
                     /EC_number="2.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--pyruvate transaminase"
                     /protein_id="HAY9041338.1"
                     /translation="MTFSLFGDKFTRHSGITLLMEDLNDGLRTPGAIMLGGGNPAQIP
                     EMQDYFQTLLTDMLESGKATDALCNYDGPQGKTELLTLLAGMLREKLGWDIEPQNIAL
                     TNGSQSAFFYLFNLFAGRRADGRVKKVLFPLAPEYIGYADAGLEEDLFVSARPNIELL
                     PEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELLKLDALANQHGIPLVID
                     NAYGVPFPGIIFSEARPLWNPNIVLCMSLSKLGLPGSRCGIIIANEKIITAITNMNGI
                     ISLAPGGIGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQETIAIIRRYLPENRCLIHK
                     PEGAIFLWLWFKDLPITTEQLYQRLKARGVLMVPGHNVFPGLDKPWPHTHQCMRMNYV
                     PEPEKIEAGVKILAEEIERAWAESH"
     gene            complement(15096..15569)
                     /locus_tag="JN078_002136"
     CDS             complement(15096..15569)
                     /locus_tag="JN078_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HAY9041339.1"
                     /translation="MNRFIIADATKCIGCRTCEVACAVSHQENQDCAALSPDEFISRI
                     RVIKDHSWTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFG
                     AMEVVSSRKKARAIKCDLCWHRETGPACVEACPTKALQCMDVEKVQRHRLRQQPV"
     gene            complement(15671..16519)
                     /gene="yiaJ"
                     /locus_tag="JN078_002137"
     CDS             complement(15671..16519)
                     /gene="yiaJ"
                     /locus_tag="JN078_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator YiaJ"
                     /protein_id="HAY9041340.1"
                     /translation="MGKEVMGKKENEMAQEKERPAGSQSLFRGLMLIEILSNYPNGCP
                     LAHLSELAGLNKSTVHRLLQGLQSCGYVTTAPAAGSYRLTTKFIAVGQKALSSLNIIH
                     IAAPHLEALNIATGETINFSSREDDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMG
                     KIYMAFGHPDYVKSYWENHQHEIQPLTRNTITELPAMFDELAHIRESGAAMDREENEL
                     GVSCIAVPVFDIHGRVPYAVSISLSTSRLKQVGEKNLLKPLRETAQAISNELGFTVRD
                     DLGAIT"
     gene            16720..17718
                     /gene="yiaK"
                     /locus_tag="JN078_002138"
     CDS             16720..17718
                     /gene="yiaK"
                     /locus_tag="JN078_002138"
                     /EC_number="1.1.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydro-L-gulonate 2-dehydrogenase"
                     /protein_id="HAY9041341.1"
                     /translation="MKVTFEQLKAAFNRALISRGVDSETADACAEMFARTTESGVYSH
                     GVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAA
                     DHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLI
                     VAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRI
                     LPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPT
                     RDAKLQRIMDYVTTAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL"
     gene            17730..18198
                     /locus_tag="JN078_002139"
                     /pseudo
     CDS             17730..18198
                     /locus_tag="JN078_002139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418033.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF386 domain-containing protein"
     gene            18316..18789
                     /gene="yiaM"
                     /locus_tag="JN078_002140"
     CDS             18316..18789
                     /gene="yiaM"
                     /locus_tag="JN078_002140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diketo-L-gulonate TRAP transporter small
                     permease YiaM"
                     /protein_id="HAY9041342.1"
                     /translation="MKKILEVILAINLAVLSCIVFINIILRYGFQTSILSVDELSRYL
                     FVWLTFIGAIVAFMDNAHVQVTFLVEKLSPAWQRRVALVTHSLILFICGALAWGATLK
                     TIQDWSDYSPILGLPIGLMYAACLPTSLVIAFFELRHLYQLITRSNSLTSPPQGA"
     gene            18792..>19773
                     /locus_tag="JN078_002141"
     CDS             18792..>19773
                     /locus_tag="JN078_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HAY9041343.1"
                     /translation="MAVLIFLGCLLGGIAIGLPIAWALLLCGAALMFWLDMFDVQIMA
                     QTLVNGADSFSLLAIPFFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVLAAM
                     IMASLSGSAVADTAAVAALLVPMMRSANYPVNRAAGLIASGGIIAPIIPPSIPFIIFG
                     VSSGLSISKLFMAGIAPDMMMGATLMLTWWWQASRLNLPRQQKATMQEIWHSFVSGIW
                     ALFLPVIIIGGFRSGLFTPTEAGAVAAFYALFVATVIYREMTFATLWHVLIGAAKTTS
                     VVMFLVASAQVSTWLITIAELPMMVSDLLQPLVDSPRLLFIVIMVAILIVG"
BASE COUNT         4990 a         4952 c         4803 g         5028 t
ORIGIN      
        1 cagcccaaaa tttactggat tgataacctg cgagggatag cgtgtttaat ggtggtgatg
       61 attcacacca ctacctggta tgtgaccaat gctcatagtg ttagccccgt cacatgggat
      121 atcgccaatg ttctgaattc tgcctctcgt gtcagcgtgc cgctattttt catgatttcc
      181 ggctatctct tttttggcga acgcagcgcc cagccgcgcc atttcttgcg tatcggctta
      241 tgtctgattt tttatagcgc aatcgcactg ctctacattg cgctgtttac ctccatcaat
      301 atggagttag cgctgaaaaa cctgctgcaa aagccagtgt tttaccactt gtggtttttc
      361 ttcgcgattg cggtgattta tctggtttca ccgctgattc aggtgaagaa cgtcggcgga
      421 aaaatgttgc tggtgctaat ggcggtgatt ggcattatcg ctaacccaaa cacagtgccg
      481 cagaaaattg acggttttga atggctgcca attaacttat atatcaatgg cgatactttt
      541 tactacattc tgtatggcat gttgggccgc gctataggga tgatggacac acagcataaa
      601 gcactgtcgt gggtgagcgc cgcgctgttt gcgacggggg tttttattat ctctcgcggg
      661 acattatatg aattgcagtg gcgcggaaat tttgccgata cctggtatct ttactgtggg
      721 ccgatggttt ttatctgcgc aatcgcgcta ttgactctgg ttaaaaacac gctggatacg
      781 cgtaccattc gcggacttgg cttaatctcc cgccattcat tgggtatata cggattccac
      841 gccttgatta tccatgcgct gcgcacccgg ggaattgagc ttaaaaattg gccaatactg
      901 gatattattt ggatcttttg cgcgacgttg gcagcgagtt tgttactttc tatgctggta
      961 caacgaatcg acagaaacag attagtgagt taagtaaaag cccgttcaca ttggactgac
     1021 cgggcttacg tgaattattc gctgtattct tcctgggtaa cctgtgtttc ttttggcggg
     1081 tttattccgg catcacgaat attcttctgc accgctactg caccaaacaa gcttaagaag
     1141 aaagccagtc cataaaaacc tttttcactg agtaataatg tcgcattcca cagacctacc
     1201 atcagtaatg caacagagat aataaagaca gtcaggcagg tcatataata aatggaagtg
     1261 gtcggtatgc cttcatactt gtcccgaacg gtcttttgat aagacgcagc agaaaacagt
     1321 cctaacacca gtacggcaaa ataataccct ttttcattta actgcatctc tgcattccat
     1381 agccctaaca gataggtaac gataccacca acgagagcta tccatgacac aatactaaag
     1441 gccggtgaat aggttgatat tttgttgtcc atcacagtat tcctttcatt cctgaatgtg
     1501 taagagcttt atgttgctca taccgagcga aacaaacgca tttgaccaaa caagcagaca
     1561 aaaaaggcga tggggtagat caccatttca taagcattga taggtgcatt taaaacaccg
     1621 ataaacaaga gaccgatagt gattaacgca actaactggc agatatgggt aaaaaaatta
     1681 tccagttgcc cgagtttttc tgcgcgaaga tatgcatagt taccaaaagt tgctgtcatt
     1741 aacacgccaa gaaaatagcc ttttccactt agcaatgggc atgagatcca tagcccaacc
     1801 agataaacca gcgccccgac aacaaataat agttttgcca cagtttttga ggttttcata
     1861 acgatctcca tatctaccag cgatacatta cgagtaacca acgaaagaca aaactgaaaa
     1921 atgccattaa caaatgattt tcagaataaa ttcatactaa atattaatta gtgagatata
     1981 tagatgtgaa ttatccccca cccggtcagg caggggataa cgtttacgcc attaatggca
     2041 gaagttgctg atagaggcga cggaacgttt cacgtcgtgg ctgataagcg gcataacgct
     2101 gcgcatctgg tagatgcgac tgttctaacg gtagctgcgg caacaactca atgagcgatt
     2161 tctctggatt cgccgcaatc tgcgccagcc ttgctgcgcc cagtgctggc cccacatccc
     2221 cccgtacggt aatcgagctg ctgaccgctg atatccgcca gcatctgacg ccagtactca
     2281 ctacgcgccc cgccaccaat caacgtaaca ctttgcggtt taatgccgca ggcatgcacg
     2341 acatccatgc catctgccag cgcataaccc acgccttcca gcactgctcg cgccagttca
     2401 ttggggccat gttgatgagt caaaccaaag aaaaccccct tcgcctgggg attattgtgt
     2461 ggtgtacgct cgccggaaag ataaggcaga aaccaaactg gctcggcact ttcatcagcc
     2521 tgttgagctg cagcgattaa agctgggaca ttgcacaggc cggttaattt cgcgacccaa
     2581 tccagacacg atgctgcact cagcattaca gacattaaat gccaacgctg cggtagcgca
     2641 tggcaaaagc tgtgtacagc gctttctggc ttgcttaaga acccttcgct gacagcaaaa
     2701 tagacccccg acgtccccag cgataacatt gcctgattag catcaaccat tcccacacca
     2761 actgcattgt cgccaccgcc tgcgacaact ggcaccgtcg ccatacccca cgctttcgca
     2821 acttcaggta acaaagcacc agtaatttcg ctgccttcgt ataatgcggg catctggtca
     2881 cgagataagt cgcaagcctg cagcatgacg tcactccagt cacgctttgc gacatccagc
     2941 cacatggtgc cagctgcgtc agacatatcg ctggcaaact cccccgtcat acgcagacgc
     3001 aagtaatctt tcggtaataa tactttgtcg atttgacgga atatctccgg ctcatgccgc
     3061 tgaacccata gcaatttagg cgcagtaaat ccgggcatca tcaggttgcc ggtaatcact
     3121 cgtgattgcg gaactctcgc ttccagcaaa gtgcactctt gcgcacagcg cccgtcgttc
     3181 cacaaaatgg cagggcgcaa tacccgttgt tgagcatcca gtaaggttgc tccatgcatc
     3241 tggccggcaa tacccaatgc tttaacgtcc tgcagagaat gctgatcgcc cagagctttc
     3301 attgcgcgat cagttgcctg ccaccactgt tccgggtctt gttccgacca gagtggatgc
     3361 gggcgcgaaa cggtcagctt ttccgtttgc gaagcaacca cctcaccctg ctcgttgagc
     3421 aaaataactt ttacgcccga ggtgccaaga tctatcccga tatacatatc gatcgttcct
     3481 taaaaaaatg cccggtatcg ctaccgataa ccgggccaac ggactgcaca gttagccgtt
     3541 atttgtcgaa cagataatga tttaccagat tttccagttg ctcctagcga ccactctgat
     3601 gcaccggaga caaattatgt tcctgagcat atttggctaa atctgccagt gacatttggc
     3661 ctttcaggat ttgctggccc aattcgctat tccagccgga ataacgctgc gcgatgcgtt
     3721 tatccagctc gccatcttca atcatgcgcg ctgcaatttt cagcgccagt gccatcgtat
     3781 ccatcgcgcc gatatgaccg taaaacagat catatttatc agtactttga cgacgtactt
     3841 tggcatcgaa gttcagacca ccggtggtga aaccgcctgc tttgagaatt tcatacatca
     3901 ccagcgcatt ctcttccaca ctgttcggga actggtcggt gtcccagccc agttgcgcat
     3961 cgccacggtt ggcgtcgaca gaaccgaaca ggccaagcgc aatggcggtg gctatttcat
     4021 gatggaaaga gtgacctgcc agcgtcgcgt ggttagcttc aatgttcagt ttaatctctt
     4081 tttccagacc aaactgtttc aggaagccat agaccgtcgc ggcatcgtaa tcatattgat
     4141 gtttagtcgg ttcttgcggt ttcggttcga taagcaacgt gccctggaag ccgattttat
     4201 gtttatgctc aaccaccatc tgcataaagc ggcccagttg ttcacgctcc tgacgcaagt
     4261 cggtatttaa cagcgtttcg taaccttcac gaccacccca caggacatag ttttcaccgc
     4321 ccaatttatg ggttgcttcc atcgctgtaa caacttgcgt tgccgcccag ctgaagactt
     4381 caggatctgg gttcgtcgcc gcacccgcgc catagcgagg gtttgtaaag cagttagcgg
     4441 ttccccacag cagcttcacg ccgctctctt cttgcttggc tgccaggaca tcaaccattt
     4501 gcgcaaaatt attgatgtac tcttttaacg acgcgccctc aggggaaaca tccacatcgt
     4561 ggaagcaata aaatgacaca tgtaacttgt ggaaaaactc aaatgcgaca tctgctttac
     4621 gcttcgccaa cgccagtgcc tcaccaggct gctgccacgg acgattaaac gcccccacac
     4681 caaacatgtc cgccccgttc cagcagaagg tgtgccagta acaggcggca aaacgcaagt
     4741 gctcttccat acgcttaccc aacaccagtt cgtcgggatt gtagtgacgg aatgctaacg
     4801 ggtttgagga ttttgagcct tcataacgaa cgcgatcgag ctggtcaaaa taggcttgca
     4861 tattgaactc cataatcagg taatgccgcg ggtgatggat gatgtcgtaa tattgggcac
     4921 tccctttcag ttgctcaatt atgttatttc acactgctat tgagataatt cacaagtgtg
     4981 cgctcgctcg caaaataaaa tgggatgatg aaactgggta attcctcgaa gataaaaatg
     5041 caataagtac aattgcgcaa caaaagtaag atctcggtca taaatcaaga aataaaccaa
     5101 aaatcgtaat cgaaagataa aaatctgtaa ttgttttccc ctgtttagtt gctaaaaatt
     5161 ggttacgttt atcgcggtga ttgttactta ttaaagctgt cctctaacta cagaaggccc
     5221 tacaccatga aaataaagaa cattctactc accctttgca cctcacttct gcttaccaac
     5281 gttgcggcac acgccaaaga aatcaaaata ggtatggcga ttgatgatct acgtcttgaa
     5341 cgctggcaaa aagatcgaga tatttttgtg aaaaaggctg aatctctcgg tgcgaaagta
     5401 tttgtacagt ctgcaaatgg caatggagaa acacaaatgt cgcagattga aaacatgatt
     5461 aaccggggtg tcgatgttct tgtcattatt ccgtataacg gccaggtatt aagtaacgtt
     5521 gtaaaagaag ccaaacaaga aggtattaaa gtattagctt acgaccgtat gattaacgat
     5581 gcggatatcg atttttatat ttctttcgat aacgaaaaag tcggtgaact gcaggcaaaa
     5641 gccctggtcg atattgttcc gcaaggtaat tacttcctga tgggcggctc gccggtagat
     5701 aacaacgcca agctgttccg cgccggacaa atgaaagtgt taaaacctta cgttgattcc
     5761 ggaaaaatta aagtcgttgg tgaccaatgg gttgatggct ggttaccgga aaacgcgcta
     5821 accgccaata ataacaaaat tgatgctgta gttgcctcaa acgatgccac cgcaggtggg
     5881 gcaattcagg cattaagcgc gcaaggttta tcagggaaag tagcaatttc cggccaggat
     5941 gcggatctcg caggtattaa acgtattgct gccggtacgc aaactatgac ggtgtataaa
     6001 cctattacat tgctggcaaa tactgccgca gaaattgccg ttgaattggg caatggtcag
     6061 gagccaaaag cagatacctc actgaataat ggcctgaaag atgtcccctc ccgcctcctg
     6121 acaccgatcg atgtgaataa aaacaacatc aaagatacgg taattaaaga cggattccac
     6181 aaagagagcg agctgtaagc gttacgcccc ggcgcggagc gggggcgtga tttctctcca
     6241 tgccgcgtga atgaattggc ttaggtggag tcgttatgcc ttatctactt gaaatgaaga
     6301 acattaccaa aaccttcggc agtgtgaagg cgattgataa cgtcagcttg cggttgaatg
     6361 ctggcgaaat cgtctcactc tgtggggaaa atgggtctgg taaatcaacg ctgatgaaag
     6421 tgctgtgtgg tatttatccc catggctcct acgaaggcga aattattttt gcgggagaag
     6481 agattcaggc gagtcacatc cgcgataccg aacgcaaagg tatcgccatc attcaccagg
     6541 aattggccct ggtgaaagaa ttgaccgtgc tggaaaatat cttcctgggt aacgaaataa
     6601 cccacaatgg cattatggat tatgacctga tgacgctacg ctgtcagaag ctgctcgcac
     6661 aggtcagttt atccatttca cctgataccc gcgttggcga tttagggctt gggcaacaac
     6721 aactggttga aattgccaag gcacttaata aacaggtgcg cttgttaatt ctcgatgaac
     6781 cgacagcctc attaactgag caggaaacgt cggttttact ggatattatt cgcgatctac
     6841 aacagcacgg tatcgcctgt atttatattt cgcacaaact caacgaagtc aaagcgattt
     6901 ccgatacgat ttgcgttatt cgcgacggtc agcacattgg tacgcgtgat gctgccggaa
     6961 tgagtgaaga cgatattatc accatgatgg tcgggcgaga gttaaccgcg ctttacccta
     7021 atgaaccaca taccaccgga gatgaaatat tacgtattga acatctgacg gcatggcatc
     7081 cggttaatcg tcatattaaa cgagttaatg atgtctcgtt ttccctgaaa cgtggcgaaa
     7141 tactgggtat tgccggactc gttggtgccg gacgtaccga gaccattcag tgcctgtttg
     7201 gcgtgtggcc cggacaatgg gaaggaaaaa tttatattga tggcaaacag gtagatattc
     7261 gtaactgtca gcaagccatc gcccagggga ttgcgatggt acccgaagac agaaagcgcg
     7321 acggcatcgt tccggtaatg gcggttggta aaaatattac cctcgccgca ctcaataaat
     7381 ttaccggtgg cattagccag cttgatgacg cggcagagca aaaatgtatt ctggaatcaa
     7441 tccagcaact caaagttaaa acgtcgtccc ccgatcttgc tattggacgt ttgagcggcg
     7501 gcaatcagca aaaagcgatc ctcgcccgct gtctgttact caacccgcgc attctcattc
     7561 ttgatgaacc taccaggggt attgatattg gcgcgaaata tgagatctac aaattaatta
     7621 accaactcgt ccagcagggt attgccgtta ttgtcatctc ttccgaatta cctgaagtgc
     7681 tcggccttag cgatcgtgta ctggtgatgc atgaagggaa actaaaagcc aacctgataa
     7741 atcataacct gactcaggag caggtgatgg aagccgcatt gaggagcgaa catcatgtcg
     7801 aaaagcaatc cgtctgaagt gaaattggcc gtaccgacat ccggtggctt ttccgggctg
     7861 aaatcactga atttgcaggt cttcgtgatg attgcagcta tcatcgcaat catgctgttc
     7921 tttacctgga ccaccgatgg tgcctactta agcgcccgta acgtctccaa cctgttacgc
     7981 cagaccgcga ttaccggcat cctcgcggta ggaatggtgt tcgtcataat ttctgctgaa
     8041 atcgaccttt ccgtcggctc aatgatgggg ctattaggtg gcgtcgcggc gatttgtgac
     8101 gtctggttag gctggccttt gccacttacc atcattgtga cgttggttct gggactgctt
     8161 ctcggtgcgt ggaacggatg gtgggtcgcg taccgtaaag tcccttcatt tattgtcacc
     8221 ctcgcgggca tgttggcatt tcgcggcata ctcattggca tcaccaacgg cacgactgta
     8281 tcccccacca gcgccgcgat gtcacaaatt gggcaaagct atctccccgc cagtaccggc
     8341 ttcatcattg gcgcgcttgg cttaatggct tttgttggtt ggcaatggcg cggaagaatg
     8401 cgccgtcagg ctttgggttt acagtctccg gcctctaccg cagtagtcgg tcgccaggct
     8461 ttaaccgcta tcatcgtatt aggcgcaatc tggctgttga atgattaccg tggcgttccc
     8521 actcctgttc tgctgctgac gttgctgtta ctcggcggaa tgtttatggc aacgcggacg
     8581 gcatttggac gacgcattta tgccatcggc ggcaatctgg aagcagcacg tctctccggg
     8641 attaacgttg aacgcaccaa acttgccgtg ttcgcgatta acggattaat ggtagccatc
     8701 gccggattaa tccttagttc tcgacttggc gctggttcac cttctgcggg aaatatcgcc
     8761 gaactggacg ctattgcagc atgcgtgatt ggcggcacca gcctggctgg cggtgtggga
     8821 agcgttgccg gagcagtaat gggggcattt atcatggctt cactggataa cggcatgagt
     8881 atgatggatg taccgacctt ctggcagtat atcgttaaag gtgcgattct gttgctggca
     8941 gtatggatgg actccgcaac caaacgccgt tcttgatttt gataaaaatt ttctcaaagc
     9001 cggttacgta ttaccggttt tgagtttttg catgattcag caggaaaaga accatgttta
     9061 ctaaacgtca ccgcatcaca ttactgttca atgccaataa agcctatgac cggcaggtag
     9121 tagaaggcgt aggggaatat ttacaggcgt cacaatcaga atgggatatt ttcattgaag
     9181 aagatttccg cgcccgcatt gataaaatca aggactggtt aggagatggc gtcattgccg
     9241 acttcgacga caaacaaatc gagcaagcgc tggctgatgt cgacgtcccc attgttgggg
     9301 ttggcggctc gtatcacctt gcagaaagtt acccacccgt tcattacatt gccaccgata
     9361 actatgcgct ggttgaaagc gcatttttgc atttaaaaga gaaaggcgtt aaccgctttg
     9421 ctttttatgg tcttccggaa tcaagcggca aacgttgggc cactgaacgc gaatatgcat
     9481 ttcgtcagct tgtcgccgaa gaaaagtatc gcggagtggt ttatcagggg ttagaaaccg
     9541 cgccagagaa ctggcaacac gcgcaaaatc ggctggcaga ctggctacaa acgctgccac
     9601 cgcaaaccgg gattattgcc gttactgacg cccgggcgcg gcatattctg caagtatgtg
     9661 aacatctaca cattcccgta ccggaaaaat tatgcgtgat tggcatcgac aacgaagaac
     9721 tgacccgcta tctgtcgcgt gtcgcccttt cttcggtcgc tcagggcgcg cggcaaatgg
     9781 gctatcaggc ggcaaaactg ttgcatcgat tattagataa agaagaaatg ccgctacagc
     9841 gaattttggt cccaccagtt cgcgtcattg aacggcgctc aacagattat cgctcgctga
     9901 ccgatcccgc cgttattcag gccatgcatt acattcgtaa tcacgcctgt aaagggatta
     9961 aagtggatca ggtactggat gcggtcggga tctcgcgctc caatcttgag aagcgtttta
    10021 aagaagaggt gggtgaaacc atccatgcca tgattcatgc cgagaagctg gagaaagcgc
    10081 gcagtctgct gatttcaacc accttgtcga tcaatgagat atcgcaaatg tgcggttatc
    10141 catcgctgca atatttctac tctgttttta aaaaagcata tgacacaacg ccaaaagagt
    10201 atcgcgatgt aaatcgcgag gtcatgttgt agcgatgatg agaattgtcg gcgtcacatc
    10261 agggaactca gcacagccac ctgatgcgag caaaagcctt atccgaccga caaatcagat
    10321 aaggctcaag gaaatgcaat tacatatgcg ccgcgattaa ccgttggtta tcctggtaca
    10381 ttgcgaacag gtagttatta taactcttcc ctttggtcga gtagcccttc agcttgtgaa
    10441 tcatcgctgt ggcagtcact tcctgatccg ctttacgcag ctgcgcacgc gatttacgga
    10501 acgaagagta agccgggtgc gtattcaggt tagtgacata ggcgctcacc gattctttga
    10561 cagaactaaa ctgtgagtac cctttcactt tacccggcgc attggtacaa cgtcctttca
    10621 tgcatttcat gccgaacaga ttgttattgt tgcgcgccag cttcgacgtt ccccaaccgc
    10681 tttctgctgc agccatcgtc gccaccatac tggtagggat aatgtctacg cgttcaagca
    10741 aggtattcca cgggattttt cgcgtattac cagaccactt caccttgtag cgtttggcga
    10801 tgtctttcag acgcgcacgc tcagcaggtg accattggcc ctgatactgt tttgaaatca
    10861 gccagttacg ttctgcagta atggctgcat tttggctggt aatgtaaggc attacggtcc
    10921 ggagaaacgc ctttttcctt ggtgttccgg aagggtattt tcgcaaatca ggaagtgaac
    10981 tactctttgc actattgcga gaatactctt gtttactgct tacctgttta ttactagctt
    11041 tagttaagtg ggacttttga ctcgctgttg ttgtgtgcgt cttcgctaac acctcactcg
    11101 aaaacaccag agtgagtaac ataagaatca tcgccccata tcgtcgtatg ggagtcaaaa
    11161 tcatcaggtc tcctggtcgg atttaatcat tccaacacct tatatttttc acaaatttga
    11221 gagttgaatc tcaaatcata tcaaaaatag ctgtcaagag caccccaagg aatagtccaa
    11281 atctgaaact atgtcacgag ttaacgattc agattggcgc taaatcgcag aaaatgtggg
    11341 gtttatcgca aaattcagcc gttttttgcg cgcgatcgct cacccttgct tctcatcctg
    11401 tggacttacc gctcagggat gagttttgtc tggcttatcg ctggcaaact gtctgaaatc
    11461 gcagcaataa ggactcatcc accatgaaac tcgcctcctg ttttctgaca ctccttcctg
    11521 gcttcgccgt tgccgccagc tggacttctc cggggttccc tgcctttagc gaacagggaa
    11581 cgggaacatt tgtcagccac gcgcagttgc ccaaaggtac gcgtccactc acgctaaatt
    11641 ttgaccaaca gtgctggcag cctgcagatg cgataaaact caatcagatg ctttccctgc
    11701 aaccttgtag caacacgccg cctcaatggc gattgttcag ggacggcaaa tatacgctgc
    11761 aaatagacac ccgctccggt acgccaacat tgatgatttc catccagaac gccgccgaac
    11821 cggtagcaaa cctggtccgt gaatgcccga aatgggatgg attaccgctc acgctggatg
    11881 tcagcgccac tttcccggaa ggagccgccg tacgggatta ttacagccag caaattgcga
    11941 tagtgaagaa cggtcaaata acgttacaac ccgctgctac cagcaacggt ttactcctgc
    12001 tggaacgggc agaaactgac acatccgccc ctttcgactg gcataacgcc acggtttact
    12061 ttgtgctgac agatcgtttc gaaaacggcg atcccagtaa tgaccagagt tacggacgtc
    12121 ataaagacgg tatggcggaa attggcactt ttcacggcgg cgatttacgc ggcctgatca
    12181 acaaactgga ttacctccag cagttgggcg ttaatgcttt atggataagc gccccatttg
    12241 agcaaattca cggctgggtc ggcggcggta caaaaggcga tttcccgcat tatgcctacc
    12301 acggttatta cacacaggac tggacgaatc ttgatgccaa tatgggcaac gaagccgatc
    12361 tacggacgct ggttgatagc gcacatcagc gcggtattcg tattctcttt gatgtcgtga
    12421 tgaaccacac cggctatgcc acgctggcgg atatgcagga gtatcagttt ggcgcgttat
    12481 atctttctgg tgacgaagtg aaaaaaacgc tgggtgaacg ctggagcgac tggaaacctg
    12541 ccgccgggca aacctggcat agctttaacg attacattaa tttcagcgac aaaacaggct
    12601 gggataaatg gtggggaaaa aactggatca gaacggatat cggcgattac gacaatcctg
    12661 gattcgacga tctcactatg tcgctggcct ttttgccgga tatcaaaacc gaatcaacta
    12721 ccgcttctgg tctgccggtg ttctataaaa acaaaacgga tactcacgct aaagtcatcg
    12781 aaggctttac acctcgcgat tacttaaccc actggttaag tcagtgggtc cgcgactatg
    12841 ggattgatgg ttttcgggtc gataccgcca aacatgttga gttgcccgcc tggcagcaac
    12901 tgaaaaccga agccagctcc gcgcttcgcg aatggaaaaa aactaacccc gacaaagcat
    12961 tagatgacaa acctttctgg atgaccggtg aagcctgggg ccacggcgtg atgcaaagtg
    13021 actactatcg ccacggcttc gatgcgatga tcaatttcga ttatcaggag caggcggcga
    13081 aagcagtcga ttgtctggcg cagatggata cgacctggca gcaaatggcg gagaaattgc
    13141 agggtttcaa cgtgttgagc tacctctcgt cgcatgatac ccgtctgttc cgtgaagggg
    13201 gcgacaaagc agcagagtta ttactattag cgccaggcgc ggtacaaatc ttttatggcg
    13261 atgaatcctc gcgtccgttc ggtcctacag gttctgatcc gctgcaaggt acacgttcgg
    13321 atatgaactg gcaggatgtt agcggtaaat ctgccgccaa cgtcgcgcac tggcagaaaa
    13381 tcagccagtt ccgcgcccgc catcccgcaa ttggcgcggg caaacaaacg acactttcgc
    13441 tgaagcaggg ctacggcttt gttcgtgagc atggcgacga taaagtgctg gtcatctggg
    13501 ctgggcaaca gtgacttttc cggcttcccg ttcatcagta cctcgggaag ccgccaacca
    13561 ggataaaatg tcagccctaa tcagcgttgc aggataaagc accgctcact cttcaacaga
    13621 ccgatttgca ccccagcaaa tgtagcgtta ttgttacctt ccttgctaca gagttcgaca
    13681 gatatcccgc tatgacattc tccctttttg gtgacaaatt tacccgccac tccggcatta
    13741 cgctgctgat ggaagatctg aacgacggtt tacgcacgcc tggcgcgatt atgctcggcg
    13801 gcggtaatcc ggcgcagatc ccggaaatgc aggactactt ccagacgcta ctgaccgaca
    13861 tgctggaaag tggcaaagcg actgatgcac tgtgtaacta cgacggtcca caggggaaaa
    13921 cggagctact cacactgctt gccggaatgc tgcgcgagaa gttgggttgg gatatcgaac
    13981 cacagaatat tgcactaaca aacggcagcc agagcgcgtt tttctactta tttaacctgt
    14041 ttgccggacg ccgtgccgat ggtcgggtca aaaaagtgct gttcccgctg gcaccggaat
    14101 acattggcta cgctgacgcc ggactggaag aagatctgtt tgtctctgcg cgtccgaata
    14161 ttgaactgct gccggaaggc cagtttaaat accacgtcga ttttgagcat ctgcatattg
    14221 gcgaagaaac cgggatgatt tgcgtctccc ggccgacgaa tccaacaggc aatgtgatta
    14281 ctgacgaaga gttgctgaag cttgacgcgc tggcgaatca acacggcatt ccgctggtga
    14341 ttgataacgc ttatggcgtc ccgttcccgg gtatcatctt cagtgaagcg cgcccgctat
    14401 ggaatccgaa tatcgtgctg tgcatgagtc tttccaagct ggggctgcct ggctcccgct
    14461 gcggcattat catcgccaat gaaaaaatca tcactgccat caccaatatg aacggcatta
    14521 tcagcctggc acctggcggt attggtccgg cgatgatgtg tgaaatgatt aagcgtaacg
    14581 atctgctgcg cctgtctgaa acagtcatca aaccgtttta ctaccagcgt gttcaggaaa
    14641 ctatcgccat cattcgccgc tatttaccgg aaaatcgctg cctgattcat aaaccggaag
    14701 gagccatttt cctctggcta tggtttaagg atttgcccat tacgaccgag cagctctatc
    14761 agcgcctgaa agcacgcggc gtgctgatgg tgccggggca caacgtcttc ccgggactgg
    14821 ataaaccgtg gccgcatacg catcaatgta tgcgcatgaa ctacgtacca gagccggaga
    14881 aaattgaggc gggggtgaag attctggcgg aagagataga aagagcctgg gctgaaagtc
    14941 actaaaaatt gcctgatgcg ctacgcttat caggcctaca tgatttctgc aatatattga
    15001 atttggaaga atttgtaggc cggataaggc gtttacgccg catctggcat aaacaaagcg
    15061 cactattccg gcgttgagaa acgccggaaa acgtttcaaa caggctgctg ccgtagccga
    15121 tgccgctgca ctttctcgac atccatgcac tgcaacgcct ttgtcgggca ggcttcaaca
    15181 caggccggcc ccgtctcccg atgccagcac agatcgcact taatcgccct cgcctttttg
    15241 cgcgaagaaa cgacctccat cgcaccaaac gggcaagcca gcatacagct tttacagcca
    15301 atgcaacgtg tttgttcaac gaaaatatgc ccatgttcgc ggcttatcgc gtcaacaggg
    15361 cagacattcg cgcacggtgc atcttcacac tgatgacagg ctactgccgt ggtccagctg
    15421 tggtctttaa tgacacgaat acgggaaata aactcgtctg gtgacaacgc agcgcaatcc
    15481 tgattctcct gatgcgacac tgcgcaagcc acttcacagg tacggcaacc gatacatttc
    15541 gtcgcatccg caataataaa ccggttcatg atcactcctt tgcactaaaa cagcagagtg
    15601 ccagagagcg cgtccctact gctttgatcc aacgaaggaa atgttaaagt tttggcactt
    15661 gtccaaagcg ttatgtgatc gcgcccaggt catccctgac agtaaatccc agttcattag
    15721 aaatagcctg cgcggtttca cgcagtggtt tcaggagatt tttctctccc acctgtttca
    15781 gacgtgatgt cgaaagcgaa atcgacacgg cgtacggcac ccgcccatga atatcaaaca
    15841 ccggaacagc aatacaggag acgccgagtt cgttttcttc tctgtccatc gccgctccgc
    15901 tttcacgaat gtgcgccagt tcgtcgaaca tcgcgggcag ctcggtaatg gtattgcggg
    15961 ttaacggctg gatctcatgc tgatggtttt cccagtatga cttcacgtag tccgggtgac
    16021 caaacgccat gtagatcttg cccattgcgg aacagtagag cggcatatgc tggccaatat
    16081 aggcacgggt tcgcagcatc ccggttgtgg gttccagctt ataaatcaaa atagcgtgat
    16141 cgtcttcgcg gctggagaag ttaatggttt caccagtggc gatgttcagt gcctcaagat
    16201 gcggagcggc gatatgaatg atattcagcg aagacagcgc cttctgcccg acggcaataa
    16261 atttggtagt caggcggtaa ctccctgcgg cgggcgcggt ggtcacatag ccgcaggact
    16321 gtaatccctg caataagcga tggacggtac tcttatttaa accagccagc tccgaaagat
    16381 gcgccaacgg acaaccgttt ggatagttgc tcaaaatctc aatcagcatc aacccgcgaa
    16441 acagactctg gcttccggct ggacgctctt tttcctgcgc catctcgttc tctttttttc
    16501 ccatcacttc tttccccatt ttgtcgcgtc ctgatggtag cgcaaagtgt gccgtagttc
    16561 acgatctcga cagataattt ataaccactt gatttttatg tcttttgaaa ttcatcaatc
    16621 agattgcttt gttaaaaagt gatcgatata tttgaaatca agtttcgcat attgaaattt
    16681 taagccaaaa aagcgatcaa aaaaacaagg aagcctggga tgaaagtgac atttgagcag
    16741 ttaaaagcag cctttaatcg ggccttaatt tcacgcggcg ttgacagcga aacggctgac
    16801 gcctgtgcag agatgttcgc ccgcaccacc gaatccggcg tttattctca cggcgttaat
    16861 cgtttccctc gtttcattca acaactggaa aacggcgata tcattcctga tgcccaaccc
    16921 aaacgtataa ccagcctcgg cgcaattgaa cagtgggatg cccagcgttc gatcggcaac
    16981 ctgacggcga aaaagatgat ggatcgcgcc attgaactgg ctgccgatca cggtattggt
    17041 ctggtggcac ttcgtaatgc caaccactgg atgcgcggcg gcagctacgg ctggcaggcg
    17101 gcggaaaaag gctatattgg catttgctgg accaactcca tcgccgtaat gccgccgtgg
    17161 ggcgcaaaag agtgtcgcat tggcactaac ccgctgatcg tcgccattcc ttccacgccg
    17221 atcaccatgg tcgatatgtc gatgtcgatg ttctcttacg gcatgttaga agttaaccgc
    17281 ctggcgggcc gtcagctccc ggtcgatggt ggctttgatg atgagggcaa tttgaccaaa
    17341 gaacctggcg ttatcgagaa gaatcgccgc attttgccga tgggctactg gaaaggttct
    17401 ggcatgtcga ttgtgctgga tatgatcgct actctccttt ccgacggcgc atcggttgcc
    17461 gaagtcaccc aggacaacag cgacgaatac ggcatttcac aaatttttat tgccattgaa
    17521 gtggacaagc ttatcgacgg tcccacccgc gatgccaagc tgcaacgcat catggattac
    17581 gttactaccg ctgaacgcgc tgacgaaaac caggccatcc gcttacccgg ccacgaattt
    17641 actaccctgc tggccgaaaa ccgccgtaac ggcatcactg ttgatgacag cgtgtgggcc
    17701 aaaatccagg cgttatgagg agataagtca tgatttttgg acatatcgcg cagcccaatc
    17761 cgtgccgttt gcccgccgcc attgaaaagg cgctcgattt tctgcgcgct accaacttca
    17821 acgtcctgga gccgggcgtt gtcgaaatcg acggcaagaa tatttatgcg caaattatcg
    17881 atttaaccac acgcgaagcg gtggaaaacc gtccggaagt gcatcgtcgg tatatcgata
    17941 ttcagtttct ggcgtggggt caagagaaaa tcggcattgc tattgataca ggaaataata
    18001 aagtcagcga atcactatta gagcagcgcg atattatttt ttatcatgtc agtgaacatg
    18061 aatcatttat agaaatgata ccgggcagct acgctatttt cttcccgcag gatgttcacc
    18121 gaccaggttg tattctgcaa acaggcctct gagatacgaa aaattgtggt taaagtcgca
    18181 ttaacagcgc tgaattaatc aaataatcgt ctacgccaga acgactgggt aatgttattg
    18241 ctctaactat attaataatt taggttgctg cacatgcaac ttgaattatg acagacatag
    18301 cctcaaggaa tagctatgaa aaaaatactt gaagtaatac tggcgattaa tctcgccgta
    18361 ctttcctgta ttgtgtttat aaacattatt ttaagatatg gttttcagac aagcatttta
    18421 tctgtagatg aattgtcacg ttatttattt gtctggttaa catttattgg cgcgattgtg
    18481 gcttttatgg ataacgccca cgttcaggtc acctttctgg tggagaaact ctcccccgca
    18541 tggcaacgac gagtcgctct ggttacccat tccttaatct tatttatttg tggcgcactg
    18601 gcctggggcg caacactaaa aacaattcag gactggagcg attattcacc gatcctcggt
    18661 ttgcccatcg gcctgatgta tgccgcttgt ctgcccacca gcctcgttat cgcattcttt
    18721 gaactgcgtc atttatatca actcatcacg cgtagcaatt ctctaacgtc gccaccgcaa
    18781 ggagcttaat catggctgtg ctgatttttc tgggctgtct gttgggtggt attgctatcg
    18841 gtttgcctat tgcctgggca ctgttgttgt gcggggcggc gttaatgttc tggctggaca
    18901 tgtttgatgt ccagatcatg gcacaaacgc tggtgaacgg agccgatagc ttctccctgc
    18961 tggcgattcc gttctttgtg ctggcgggtg aaatcatgaa tgcgggcggc ttgtcaaaac
    19021 gcattgttga cctgccgatg aaactggtgg ggcataaacc aggcgggctg ggctacgtcg
    19081 gcgtgctggc agctatgatt atggcgagcc tttctggttc tgccgttgcg gataccgccg
    19141 ccgttgccgc tctactggtg ccgatgatgc gcagcgccaa ctacccggtc aaccgggcgg
    19201 cggggctgat tgcctctggc ggcattatcg cgccaattat tcccccttcc attccgttta
    19261 ttatcttcgg cgtttccagc ggattatcca tcagtaagct gtttatggcg ggcattgccc
    19321 ctgacatgat gatgggcgca acgctgatgc ttacctggtg gtggcaggcc agtcgcctta
    19381 atttaccccg ccagcaaaaa gcaacgatgc aggaaatctg gcactctttt gtctccggta
    19441 tctgggctct gtttcttcca gtcatcatta ttggcgggtt tcgctccggt ctgtttaccc
    19501 ctaccgaagc cggggccgtt gctgctttct atgcgctgtt tgtcgccaca gttatttacc
    19561 gtgaaatgac cttcgccaca ctttggcatg tactcattgg cgcggcgaaa accacctcag
    19621 tggttatgtt tctggtggcc tcggcacaag tttccacctg gctgattacc attgctgaac
    19681 tgccgatgat ggtttctgat ttactgcaac cgttggtcga ttcaccgcgt ctgctgttta
    19741 tcgtcattat ggtggctatc ctgattgtcg gca
//
LOCUS       DADMJB010000068        19607 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.068, whole genome shotgun sequence.
ACCESSION   DADMJB010000068 DADMJB010000000
VERSION     DADMJB010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19607)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19607)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19607
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.068"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            6..81
                     /locus_tag="JN078_002142"
     tRNA            6..81
                     /locus_tag="JN078_002142"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:39..41,aa:Thr,seq:ggt)
     gene            121..236
                     /gene="rrf"
                     /locus_tag="JN078_002143"
     rRNA            121..236
                     /gene="rrf"
                     /locus_tag="JN078_002143"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(468..1226)
                     /locus_tag="JN078_002144"
     CDS             complement(468..1226)
                     /locus_tag="JN078_002144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HAY9041344.1"
                     /translation="MSQILLQPANAMITLENVHKWYGQFHVLKNINLTVQPGERIVLC
                     GPSGSGKSTTIRCINHLEEHQQGRIVVDGIELNEDIRNIERVRQEVGMVFQHFNLFPH
                     LTVLQNCTLAPIWVRKMPKKEAEALAMHYLERVRIAEHAHKFPGQISGGQQQRVAIAR
                     SLCMKPKIMLFDEPTSALDPEMVKEVLDTMIGLAQSGMTMLCVTHEMGFARTVADRVI
                     FMDRGEIVEQAAPDEFFTHPKSERTRAFLSQVIH"
     gene            complement(1234..2337)
                     /locus_tag="JN078_002145"
     CDS             complement(1234..2337)
                     /locus_tag="JN078_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709065.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HAY9041345.1"
                     /translation="MTKVLLSQPSRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWL
                     MWELIPPLLNWAFLQANWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINL
                     VLLIGLVSIAPMFWKILPHRGRYIAVWAVIYPLIVWWLMYGGFFGLERVETRQWGGLT
                     LTLIIASVGIAGALPWGILLALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVML
                     PLFMAEGTSIDKLIRALVGVILFQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQ
                     GLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEG
                     YVFAALIYWIFCFSMSRYSQHLEKRFNTGRTPH"
     gene            complement(2347..3517)
                     /locus_tag="JN078_002146"
                     /pseudo
     CDS             complement(2347..3517)
                     /locus_tag="JN078_002146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026209.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
     gene            complement(3585..4634)
                     /locus_tag="JN078_002147"
     CDS             complement(3585..4634)
                     /locus_tag="JN078_002147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312168.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY9041346.1"
                     /translation="MKKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDG
                     LLGFSYADADGKFSGIDVDVDVDVDVDVCRSVAAAVFGDDTKVKYTPLTAKERFTALQ
                     SGEVDLLSRNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQ
                     AGTDTELNVADYFKANNMKYTPVTFDRSDESAKALESGRCDTLASDQSQLYALRIKLS
                     NPAEWIVLPEVISKEPLGPVVRRGDDEWFSIVRWTLFAMLNAEEMGINSQNVDEKAAN
                     PATPDMAHLLGKEGDYGKDLKLDNKWAYNIIKQVGNYSEIFERNVGSESPLKIKRGQN
                     NLWNNGGIQYAPPVR"
     gene            complement(5065..5286)
                     /locus_tag="JN078_002148"
     CDS             complement(5065..5286)
                     /locus_tag="JN078_002148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041347.1"
                     /translation="MKRLIPVALLTALLAGCAHDSPCVPVYDDQGCLVHTNTCMKGTT
                     QDNWETAGAIAGGAAAVAGLTMGIIALSK"
     gene            complement(5539..8643)
                     /gene="acrF"
                     /locus_tag="JN078_002149"
     CDS             complement(5539..8643)
                     /gene="acrF"
                     /locus_tag="JN078_002149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit AcrF"
                     /protein_id="HAY9041348.1"
                     /translation="MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVS
                     VSANYPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTNDSAGSVTITLTFQSGTDPDI
                     AQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVAS
                     NVKDTLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQ
                     LGGTPALPGQQLNASIIAQTRLKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYN
                     VIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ
                     LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINT
                     LTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLS
                     AVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENK
                     GGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEE
                     DQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAG
                     MAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFE
                     LIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALSV
                     SLSDINQTISTALGGTYVNDFIDRGRVKKVYVQADAKFRMLPEDVDKLYVRSANGEMV
                     PFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLASKLPAGIGY
                     DWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA
                     ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLR
                     PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFLPVFFVVIRR
                     CFKG"
     gene            complement(8655..9812)
                     /gene="acrE"
                     /locus_tag="JN078_002150"
     CDS             complement(8655..9812)
                     /gene="acrE"
                     /locus_tag="JN078_002150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit AcrE"
                     /protein_id="HAY9041349.1"
                     /translation="MTKHARFFLLPSFILISAALIAGCNDKGEEKAHVGEPQVTVHIV
                     KTAPLEVKTELPGRTNAYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQA
                     NYNSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVIAAK
                     GTVESARINLAYTKVTAPISGRIGKSTVTEGALVTNGQTTELATVQQLDPIYVDVTQS
                     SNDFMRLKQSVEQGNLHKENATSNVELVMENGQTYPLKGTLQFSDVTVDESTGSITLR
                     AVFPNPQHTLLPGMYVRARIDEGVQPDAILIPQQGVSRTPRGDATVLIVNDKSQVEAR
                     PVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPGEQVKATTDTPADTASK"
     gene            10211..10873
                     /gene="acrS"
                     /locus_tag="JN078_002151"
     CDS             10211..10873
                     /gene="acrS"
                     /locus_tag="JN078_002151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter transcriptional
                     repressor AcrS"
                     /protein_id="HAY9041350.1"
                     /translation="MAKRTKAEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVT
                     RGAIYWHFENKTQLFNEMWLQQPSLRELIQEHLTAGLEHDPFQQLREKLIVGLQYIAK
                     IPRQQALLKILYHKCEFNDEMLAEGVIREKMGFNPQTLREVLQACQQQGCVANNLDLD
                     VVMIIINGAFSGIVQNWLMNMAGYDLYKQAPALVDNVLRMFMPDENITKLIHQTNELS
                     VM"
     gene            complement(10876..11055)
                     /locus_tag="JN078_002152"
     CDS             complement(10876..11055)
                     /locus_tag="JN078_002152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2556 domain-containing protein"
                     /protein_id="HAY9041351.1"
                     /translation="MIRKYWWLVVFAVFVFLFDTLLMQWIELLTTETDKCRNMNSVNP
                     LKLVNCDELNFQDRM"
     gene            complement(11139..12023)
                     /gene="yhdJ"
                     /locus_tag="JN078_002153"
     CDS             complement(11139..12023)
                     /gene="yhdJ"
                     /locus_tag="JN078_002153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417728.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine-specific DNA-methyltransferase"
                     /protein_id="HAY9041352.1"
                     /translation="MRTGCEPTRFGNEAKTIIHGDALAELKKIPAESVDLIFADPPYN
                     IGKNFDGLIEAWKEDLFIDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKLF
                     TIKSRIVWSYDSSGVQAKKHYGSMYDPILMMVKDAKNYTFNGDAILVEAKTGSQRALI
                     DYRKNPPQPYNHQKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDII
                     LDPFAGSFTTGAVAVSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTG
                     NLSKRSRLSEVDPDLIAK"
     gene            complement(12109..12405)
                     /gene="fis"
                     /locus_tag="JN078_002154"
     CDS             complement(12109..12405)
                     /gene="fis"
                     /locus_tag="JN078_002154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001465625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator Fis"
                     /protein_id="HAY9041353.1"
                     /translation="MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNG
                     QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN"
     gene            complement(12431..13396)
                     /gene="dusB"
                     /locus_tag="JN078_002155"
     CDS             complement(12431..13396)
                     /gene="dusB"
                     /locus_tag="JN078_002155"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008785970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HAY9041354.1"
                     /translation="MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSS
                     NPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPA
                     KKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAED
                     CGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGA
                     DALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGY
                     RIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENFA"
     gene            complement(13725..14606)
                     /gene="prmA"
                     /locus_tag="JN078_002156"
     CDS             complement(13725..14606)
                     /gene="prmA"
                     /locus_tag="JN078_002156"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HAY9041355.1"
                     /translation="MPWIQLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPL
                     PGETRLWGDTDVIGLFDAETDMNDVVAILENHPLLGAGFAHKIEQLEDKDWEREWMDN
                     FHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLTGK
                     TVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAERNGVSDRLELYLPKDQ
                     PEEMKADVVVANILAGPLRELAPLISVLPVSGGLLGLSGILASQAESVCEAYADSFAL
                     DPVVEKEEWCRITGRKN"
     gene            complement(14618..16069)
                     /gene="panF"
                     /locus_tag="JN078_002157"
     CDS             complement(14618..16069)
                     /gene="panF"
                     /locus_tag="JN078_002157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312157.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/pantothenate symporter"
                     /protein_id="HAY9041356.1"
                     /translation="MQLEVILPLVAYLVVVFGISVYAMRKRSTGTFLNEYFLGSRSMG
                     GIVLAMTLTATYISASSFIGGPGAAYKYGLGWVLLAMIQLPAVWLSLGILGKKFAILA
                     RRYNAVTLNDMLFARYQSRLLVWLASLSLLVAFVGAMTVQFIGGARLLETAAGIPYET
                     GLLIFGISIALYTAFGGFRASVLNDTMQGLVMLIGTVVLLIGVVHAAGGLSNAVETLQ
                     TIDPQLVTPQGADDILSPAFMTSFWVLVCFGVIGLPHTAVRCISYKDSKAVHRGIIIG
                     TIVVAILMFGMHLAGALGRAVIPDLTVPDLVIPTLMVKVLPPFAAGIFLAAPMAAIMS
                     TINAQLLQSSATIIKDLYLNIRPDQMQNETRLKRMSAVITLVLGALLLLAAWKPPEMI
                     IWLNLLAFGGLEAVFLWPLVLGLYWERANAKGALSAMIVGGVLYAVLATLNIQYLGFH
                     PIVPSLLLSLLAFLVGNRFGTSVPQATVLTTDK"
     gene            complement(16059..16301)
                     /locus_tag="JN078_002158"
     CDS             complement(16059..16301)
                     /locus_tag="JN078_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhdT family protein"
                     /protein_id="HAY9041357.1"
                     /translation="MDTRFVQAHKEARWALGLTLLYLAVWLAAAYLPDVAPGFTGFPR
                     WFEMACILTPLLFIGLCWAMVKFIYRDIPLEDDDAA"
     gene            complement(16394..17329)
                     /locus_tag="JN078_002159"
     CDS             complement(16394..17329)
                     /locus_tag="JN078_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001446002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HAY9041358.1"
                     /translation="MGELLAEFLSRNPHQKFTQPGEFIGPFPSGAPAIFAAQVAKLSH
                     RAIFFGCVGNDDFGRLIIERLRHEGVITDGIHVMNNAVTGTAFVSYQNPQQRDFVFNI
                     PNSACGLFTAEHIDKDLLKQCNHLHIVGSSLFSFRMIDVMRKAITTIKSAGGTVSFDP
                     NIRKEMLSIPEMAQALDYLIEYTDIFIPSESELPFFARHKNLSEEQIVSDLLHGGVKH
                     VAIKRAQRGASYYKLKNGTLHAQHVTGHDIEIIDPTGAGDCFGATFITLFLSGFPAHK
                     ALQYANASGALAVMRQGPMEGISSLADIEDFLQQH"
     gene            complement(17361..18191)
                     /locus_tag="JN078_002160"
     CDS             complement(17361..18191)
                     /locus_tag="JN078_002160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000843961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HAY9041359.1"
                     /translation="MKSVNVPRKSSNLLKRRLKIAEIVATQGEIKVDDLSAQLGVSGV
                     TIRGDLSYLEQQGYLKRSFGGAIATPLSSEPEAIQPIAPLSLAQQMEIARHCARLIRD
                     RDTLFLGHGTICRKIIPLLSEVKKLRLITNDPEHALLANQFIDGEIILAGSEMLRPDT
                     ALAGKPLEQALQHFTITHSILEINHLDADGTLNINVPRLAAAWQLCFDHAQNKTVIVA
                     ADPAPSTAAIGHLHQAENVIVSRSINEQYQQQLQSADFVILYTSNECFTWSNRERLQE
                     "
     gene            18534..19388
                     /locus_tag="JN078_002161"
     CDS             18534..19388
                     /locus_tag="JN078_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000275530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose bisphosphate family class II aldolase"
                     /protein_id="HAY9041360.1"
                     /translation="MYIISSKNMLKKAQSEGYAVPAFNIHNLETLQVVVESAAQLRSP
                     VMLAGTPGTYRYGGVGSLISLVQSLAREYNLPLVLHLDHHEESDDIFNKVRAGIRSVM
                     IDGSHLPFEDNIARVQEVTTFCHRFDVSVEAELGRLGGQEDDLLVDEKDSAYTSPAAA
                     AEFVQRTQIDSLAVAIGTAHGLYAHEPRLDFVRLEQIRQRVEIPLVLHGASGLSEQDV
                     QHCIRRGICKVNVATELKIAFADALKGYFYNNPAANDPRHYMQPAKAAMKEVVTRIIG
                     VCGSEGKI"
     gene            19424..>19607
                     /locus_tag="JN078_002162"
     CDS             19424..>19607
                     /locus_tag="JN078_002162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041361.1"
                     /translation="MKNIKLLGSAMLVSLALFSQNSLAKEYKIGASLLTQQHPFYIDL
                     ANAMKEEAKKDNVNLSV"
BASE COUNT         5207 a         4903 c         4684 g         4813 t
ORIGIN      
        1 agcgtgctga tatggctcag ttggtagagc gcacccttgg taagggtgag gtccccagtt
       61 cgactctggg tatcagcacc actttttagg ttaaagttcg gcaaattaga aaagaatttg
      121 tctggcggca gtagcgcggt ggtcccacct gaccccatgc cgaactcaga agtgaaacgc
      181 cgtagcgccg atggtagtgt ggggtcttcc catgcgagag tagggaactg ccagacatca
      241 aataaaacaa aaggcccagt cttccgactg agccttttgt tttatctgtt gtttgtcggt
      301 gaacactctc tcgagtagga caaatccgcc gggagcggat ttgaacgttg cgaagcaacg
      361 gcccggaggg tggcgggcag gacgcccgcc ataaactgcc agacatcaaa tcaagcaaaa
      421 aggccatccg aaaggatggc ctttttgctt ttcgaactaa cattcaatta atggattacc
      481 tgcgataaaa atgccctcgt acgctctgat ttaggatgcg taaaaaattc atcaggtgca
      541 gcttgttcca ctatctcccc acgatccata aaaattaccc ggtcagcgac ggtacgtgca
      601 aaccccatct catgtgttac acacaacatt gtcatacccg actgcgccag cccaatcatc
      661 gtatccagca cctctttcac catctccgga tcgagcgccg acgttggttc atcaaacaac
      721 ataattttcg gcttcataca cagcgaacgc gcaatggcaa cgcgttgctg ctgaccacct
      781 gaaatctgtc cgggaaactt atgcgcatgt tcggcaattc tcacccgctc aaggtaatgc
      841 atcgccagag cttcagcctc tttcttaggc atcttgcgta cccaaatcgg tgccagggta
      901 cagttctgta aaacggtcag atgagggaag agattgaaat gctgaaatac cattcccact
      961 tcttgcctga cgcgctcaat attgcggata tcttcattaa gttcgatgcc atctacgaca
     1021 atccgtccct gttgatgttc ttccagatga ttaatacaac gaatggttgt cgatttaccg
     1081 gaaccagaag ggccacacag aacgatccgt tctcccggtt gcacggttaa atttatattt
     1141 ttcaaaacat ggaattgtcc ataccattta tggacgtttt ccagcgtaat catcgcgtta
     1201 gcaggttgca gtaaaatttg gctcatagtg tcctcaatgc ggtgtacgcc cggtgttaaa
     1261 acgtttttcc agatgttggc tataacgtga catgctgaaa caaaagatcc agtagatcag
     1321 cgcggcgaaa acataccctt ccgtcgacat acccaaccag gcgggatcaa cggttgcctg
     1381 ctgaacgcta ctgaaaagat cgaacaagcc gatgatgatc accaggctgg tatctttgaa
     1441 gagtgcgatg atggtattta ccagcccagg aattaccagc ttcaacgcct gtggcagaat
     1501 aaccagcccc tgagttttcc agtaccccaa cgccagcgac tctgccgctt catattgccc
     1561 tttaggtagg gcctgtaatc cgcctcgcac gacttccgca acatatgctg actgaaacag
     1621 gatcacgcca accagcgcgc ggatcagttt gtcgatactg gtgccttctg ccataaacaa
     1681 cggcagcatg accgaagaca taaacaatac ggtaatcagc ggtacgccgc gccagaactc
     1741 gataaaaatg accgataaga tacgcacaat cggcatatgg gagcggcgac ctaacgccag
     1801 taagatcccc cacggtagcg cccccgcaat cccaacggat gcaataatta aagttagcgt
     1861 cagcccgccc cattgccggg tttcaacccg ctcaagacca aaaaaaccgc catacatcag
     1921 ccaccagaca atcagtgggt aaatcaccgc ccagaccgca atatagcgac cgcgatgcgg
     1981 gagtattttc cagaacattg gtgcgattga cacaaggcca atcagtaata ccaggttaat
     2041 tcgccagcgt tggtcgtgtg ggtaaagtcc atacataaac tgaccaaatc gttcgtggat
     2101 gaagacccaa caggcaccgg cttttgtgca gtcggcacgc gttgagccaa cccagttagc
     2161 ctgcaaaaat gcccagttca gcaacggtgg gatcagttcc cacatcaacc atatgcagcc
     2221 aatagtcagc aggctattgc tccagctgga gaacagattt tttcgcaccc acaccatcgc
     2281 gcggcttgag ttatggctcg ctgggcgcga gggctgagac agcaatactt ttgtcatcat
     2341 gactccttag cgttcaacga tcgcgatgcg gcggttatag atattcatca gcagcgagat
     2401 agtcaggctg ataatcagat agaccgacat ggtcatggct atcgtctcga tggcttgccc
     2461 cgtctggttc agcacggtgc cagcaaacag cgaaaccata tcgggatagc caatagcggc
     2521 ggcaagagag gagtttttga cgatgttgag atactggctg gttaacggcg gaataatcac
     2581 tcgcagtgcc tggggaataa tgacctggcg tagcgtaacc ccagtgaccg agccgcttca
     2641 tgttgaccat aaggcactgc ctggatccca gcgcggataa tctcggcgat aaatgcagag
     2701 gtataaaccg aaagtgccag cgttaaggct gccagttcag gaattaaaac cattccgccg
     2761 cggaagttaa agcctcgtag ggctgggaca tcccagtgta gtgctgcgcc aaaaagccat
     2821 tgcgccagta aaggcaaacc gatgatcaac actgcggcga acggccaggt gcggcgcagt
     2881 tgtccggtct ttatctggta tgttttatta aagcggaata gcccaacaga aaggactata
     2941 gccataacaa cagccaggat aaacgcaata aatccgtctc ccagctgcgg tgacggaata
     3001 taaagcccac gattgctcaa aaaggccaga tcaaacgcgc tcacagcctg gcgcgtggtc
     3061 cgggcaaatt gcgcaacacg gcaaagtacc agaagaagat ttgcagcagc gggggaatat
     3121 tacggaagat ctcaatataa attgtggata gctttcgtag cagtcagtta tccgaaagtc
     3181 tcgtcagacc gataaagaag cctaaaacag aagcgaacac aatacacaat gcagaaacca
     3241 gtagcgtatt gagtaagccg acaataaaaa cgcgtccgta ggtgtcgccc tgctggtaat
     3301 cgatcaaatg ctggacaata ccgaagccag cgccgcgatc cagaaaggca aaacctgaag
     3361 taatgccacg attactgaga ttcgttacag tgttgtgaaa taaccaacca acaattccga
     3421 caacagcaac aacggcaagg atctggaata accaggcacg aaccgtaggg ttggcaaagg
     3481 agagtgagcc tttaacggtt gagcggcgat gagacataga aacctcggaa agcataacgc
     3541 tgaagagagc gccgccgtag cgacgctcgt tacctcacac cgacttaacg cacgggcggc
     3601 gcgtactgaa taccgccgtt attccagaga ttattttgcc cacgtttaat tttcagcggg
     3661 ctttctgaac ctacgttacg ctcgaaaatt tccgagtagt tacccacctg tttgatgatg
     3721 ttataggccc atttattatc caacttcaga tccttgccgt aatcgccttc tttacccagc
     3781 agatgtgcca tatcaggcgt tgctggatta gccgcttttt catcgacgtt ctgggaattg
     3841 atgcccatct cttcagcatt cagcatggcg aaaagcgtcc agcgtacaat cgagaaccat
     3901 tcatcatcgc cacgacgaac taccggccca agcggttctt tagagataac ctccggtaag
     3961 acaatccatt cagctgggtt gcttaatttg atgcgcaggg catacagttg cgactgatcc
     4021 gaggccagcg tatcgcagcg accagattcc agtgccttcg ctgattcgtc agagcgatcg
     4081 aaagtcaccg gtgtgtactt catattgttt gccttgaaat agtcggcaac gttgagttcg
     4141 gtatcagtac ccgcctgaat acagacggta gcgccatcca gttctttcgc gctttttagc
     4201 cccgctttat cgtgcgtcag gaagccaatg ccgtcgtaat aagtgacgcc agtaaatgcc
     4261 attcccatcc cggcgtcgcg agatgaagtc caggtcgtat tacgggagag caaatccact
     4321 tcccctgact gtaaagccgt gaagcgttct tttgctgtga gtggggtata tttcactttc
     4381 gtgtcgtcac caaatacagc agcggcaaca ctacgacaaa catcaacatc aacatcaaca
     4441 tcaacatcaa catcaatacc tgaaaactta ccgtctgcat cggcataaga gaacccaagt
     4501 aatccatcac tgatcccgca ttgcacaaaa ccttttttct gaacggcatc aagcgtcgcg
     4561 ccagcatgcg cctgatttgc aacggcaagc agcacgctgg cggcagccag tgtggctatc
     4621 atcatctttt tcataatgct tcctgtgagg cgaaaattat cgttatagga cgtttgggaa
     4681 acgtctttta cctgtctgtg gccatcctct tataagcaaa agtagtgcca gcttttgcgc
     4741 acgatttcgc gtcgcaataa gctgagtgta gacaggaaat aataaaaaca gcgccccgca
     4801 atggtgcgaa aatgaaacat gcgccacatt ttggcgcaaa atatttacgc gtgttttact
     4861 aagcagaata atgattgtta gcgtgagtat atttctggtg ggaagtgtga aagttaaatt
     4921 gatgcgttat ttcgaaagca gcgaaataac gcgatataac atgctaaatc agcagagaat
     4981 tagccagcag aatatagcaa tattttatct tatgtaaaga tactgtatcg ttaaacagag
     5041 cgcgaaactc cgcgccctgt tcagttattt cgacagagcg atgatcccca tcgtcaggcc
     5101 agcaacagcc gctgccccgc cggcaatagc cccagccgtt tcccagttat cctgagtcgt
     5161 gcctttcata caggtattgg tgtgaaccag acaaccctga tcgtcataaa ccggaacgca
     5221 gggcgaatcg tgagcacagc ccgccagcaa tgcggtgagc aatgccacag gaattaatct
     5281 tttcatggtg ttacctcagt aataaacgct aacgcttaat aagttaactc tcttattaac
     5341 gagctgaatg ccattttatc accggaggtt ataaatattg cggaatgaat aatgacaaat
     5401 tatgtgaatt gtaaaaatag tgaagggagc gggaactata gaaagttttt aaagagtgag
     5461 tggaagaata tcttattaat ttttatgggt ttcactgaaa ataataaagg cacccgaaag
     5521 tgcctttatg tttctgattt atcctttaaa gcaacggcgg atcaccacaa agaacaccgg
     5581 taggaagaag attgccagca acgttgcaga gaccattccg cccattaccc cgatacccac
     5641 tgcgttctgc gcgccactgc ctgcaccgtt actgatagct agcggtaata cgccgagaat
     5701 aaaggcgaga gaggtcatca ggataggacg cagacgcata cgtactgcca ttagtgtcgc
     5761 ttcaacaaca cctttaccct ctttctccat gagatcttta gcgaactcaa caatcaaaat
     5821 agcgtttttg gccgacaagc caattgtcgt tagcaagccc accataaagt agacgtcatt
     5881 tttttgatta aagagtgtcg ccgccagcag cacgccgaca atccctaacg gcacgaccaa
     5941 cataaccgag acaggaattg accagctttc atagagtgca gcaaggcaca ggaaaacaac
     6001 cacaaaggaa attgctacta gagcgggagc ctggtttccc gataagcgtt cctgatacga
     6061 catacccgtc cagtcataac caatgcccgc aggtaatttt gacgcaaggt tttccatcaa
     6121 cgccatggca tcgccggaac tggttcctgg cgcggcttcc ccctgaatct ccattgacgg
     6181 cagaccgttg tagcgttcca gtcgcggaga gccatacacc caatgtgaag tggtaaaggc
     6241 cgagaatggc accatttcgc cgttggcgct gcggacataa agtttatcga catcttctgg
     6301 cagcatacgg aatttggcat ccgcctgaac atacaccttt ttcacgcgac cacggtcgat
     6361 gaagtcgtta acgtaagtcc cacccaacgc cgttgaaatg gtctgattga tgtcagaaag
     6421 tgaaacactt aatgcctgcg ccttttcctg gtcaacttcc agtttaaact gcgcggtgtc
     6481 ttccaggcca ttaggacgca cgctgactaa gctggcagga tgttgcgccg ccataccaag
     6541 caactggtta cgggcctggg ttagggcatc gtgacccagc ccagcctgat caattaactc
     6601 aaagtcgaaa cccgttgccg tgcccagttc aacaatggct ggcatattga atggaatgac
     6661 aaaaccgtcg cggatcttgc ccaattccat tttggcacga tggattaccg cttccgcact
     6721 gttttcatca ccattacgct cttcccacgg tttcagactg acgaaggcca taccggcgtt
     6781 ttgtgcctgg ccgctgaagc taaagccgtt aaccgtaaag acactttcaa cgttcgcttt
     6841 ctcgttcttc agatagtaat ccgtcacttg atccaacact ttttgcgtcc gctcttgcgt
     6901 cgcgccagcg ggtaactgaa tcatggtcag aaagacaccc tgatcctctt caggtaagaa
     6961 ggaagacgga agacgtaaaa acaacaccac cattcctgca acaatcagcg catagatcag
     7021 taaatatcgt cctgtggaac cgaggatttt gccgacgctg ttggtgtagt ggttaacgct
     7081 atgatcgaag gtggtattaa accagccgaa gaaaccgccc ttattttcgt gatgctcagc
     7141 agagacgggt ttaagcagcg ttgcacataa cgcaggggta agaatcaatg ccaccagaac
     7201 agaaagtgcc attgccgaaa cgatggtgat agagaactgg cgataaattg ccccagtaga
     7261 accgccgaag aatgccatcg gaataaatac cgctgacagc accatcgcga tacccaccag
     7321 tgcgccctga atttgcgaca tcgatttttc cgtcgcttct tttggcggga gcttatcctc
     7381 catcatcacg cgctcgacgt tctccaccac cactatcgca tcatcgacga gcagcccgat
     7441 ggcaagcacc atcccgaaca tcgttagtgt gttgatggag taaccaaaag cggcgaggat
     7501 ggcaaacgtc cctaacaaca ccacgggtac cgcaatggtg gggatcagcg ttgctcgcat
     7561 attctgcaag aacagataca tcaccaggaa caccagcata atggcttcga acagcgtttt
     7621 taccacttcg tgaatagaaa gctggacgaa tggcgtggtg tcataagggt agagaacctt
     7681 cattccctgc gggaagaatg gctgtaattc cgccagtttt gccttaatgg ctttcgcggt
     7741 atcgagagca ttcgcgccgg ttgccagctt aatccccagg cccgccgccg gttttccgtt
     7801 gatacgagcg ataacgttat agttttcacc gccaagttca acccgtgcga catctttcag
     7861 gcgtaccacc gagccgtcac tgtttacgcg cagggtcact ttgccgaatt cttccggatt
     7921 ttttaaccgc gtttgagcaa taatcgaggc attcaactgt tgccctggta acgctggcgt
     7981 tccgcccaac tgtccggcag cgatctgatc gttctgtacc ttcaactggt taatcacatc
     8041 aaccggtgtc agtttatatt tgtttagcag atcggcgtcc agccagatac gcatcgcata
     8101 ctgtgcgccg aaaagctgta cgtcaccgac gccattcaga cggctaagcg tatctttaac
     8161 gttagaggcc acatagtccg agatatcgtc ctgtgtggtg cctgggttat cagagacaaa
     8221 acccgccacc atcaaatagc tgctactgga cttttcaaca ctgatcccct gctgctgaac
     8281 ctcctgcggc agcaacggcg tggcgagctg gagtttgttc tgcacctgca cttgcgcgat
     8341 atcaggatcg gtcccggact ggaaggtaag ggtaattgtc acgctaccgg cggaatcgtt
     8401 ggtggaggac atatacatca ggttatcgat accattcata ttctgttcga taacctgcgt
     8461 caccgtatcc tgcacggtct gcgcatcagc acctggatag tttgccgaaa cagaaaccgc
     8521 aggcggtgca atggttggat actgagcgac gggcaattgt aggatcgcca gtgcgcccgc
     8581 catcatcaga ataatggcca gcacccatgc aaatatcggt cgtcgaataa aaaagtttgc
     8641 catgtcagat taccttactt cgatgcagta tctgcggggg tatcggtagt ggctttaacc
     8701 tgctctcccg gacgcgcttt ttgcaggccg ctgacaatga cttgatcgcc agatttcaga
     8761 ccttcgctaa tcaaccattt atcgccaatc gcctgactgg caacgacagg gcgcgcttcc
     8821 acctgacttt tatcgttaac aatcagcacg gttgcatcac cacgcggtgt gcggctaacg
     8881 ccttgttgcg ggataagaat ggcgtcaggt tggacgcctt catcaatccg tgcacgcaca
     8941 tacatacccg gcaaaagcgt atgttgcggg ttagggaaga cagcacgtag ggttatggag
     9001 ccggtgcttt catcaacggt cacatcagag aattgcagcg tacctttcag gggataggtt
     9061 tgaccgtttt ccatgaccaa ctctacgttg ctggtggcgt tttccttatg caaatttcct
     9121 tgctctacgg attgcttcag cctcataaaa tcgttgctgg attgggtcac atcaacgtag
     9181 ataggatcga gctgctggac agtcgccagt tcagtcgttt gcccattagt gacaagagcg
     9241 ccttcggtca cggtcgattt gccgatacgt ccgctaattg gcgcagtcac tttggtataa
     9301 gcgagattga tgcgagcgct ttcgactgtg ccttttgcgg caatcacggc ggcatcggcc
     9361 tggcgagcat cagcaatggc ctggtcgtac tcctgctggc tgatgtattt cgtacccacg
     9421 agcggaacgt aacgttttac cgtcaaatgc gcgatggcgg cggcggcttc acttttcgcc
     9481 agttcgcctt tcgcgctgtt ataatttgcc tgataggtcg cgggatcgat ctggtacagg
     9541 gactggcctg cttgtacatc gctgccttca gtgaaattac gattcagtac gatcccgcta
     9601 acctgtgggc gaacttcggc tatacggtaa gcattggtgc ggcctggtaa ttcagtctta
     9661 acttctaacg gggccgtttt cacaatatga acggtaacct gcggttcacc gacgtgagct
     9721 ttctcttctc ccttatcgtt acaaccggcg attaaagccg cggagatcag aataaaggag
     9781 ggcaggagga aaaacctggc atgtttcgtc attactattc ctcaaaaaac caaaagcgcg
     9841 ttatttaccc agaaaggcaa cgcgttaact cgcagaaaga aaaatacagt ttgctatcct
     9901 acaaattatc attcgtcgat gtaaggaata gttatgaata ctggcgtctc aaggcacata
     9961 aacacaaaaa aagattaata ttctactgtt ttattttgac gcgggttgaa agaggcagaa
    10021 ttaaaacctc gtaaattgaa atatatattc atgtggcgaa tgtattttag gtaaataata
    10081 tacattgttt atttgacgat ttatagcaac tcaatgttac cctctcgtat aaatacacat
    10141 tagatgatag attaaccttc gctattttct caccctgtgt cgaatatatt tatttcctga
    10201 ataattaatc atggcaaaaa gaaccaaagc cgaagctctg aagacccggc aagaactgat
    10261 tgaaactgcc atcgcccagt ttgcgcagca tggcgtaagc aagacgacgc tcaacgacat
    10321 tgccgacgcc gctaacgtta cgcgtggcgc tatctactgg cacttcgaaa acaagactca
    10381 actgtttaat gagatgtggt tgcaacagcc ttcattgcgg gagttaatcc aggaacactt
    10441 gacggctgga ttagagcatg acccgtttca acaattgcgt gaaaaattga ttgtcggctt
    10501 gcaatatatt gccaaaattc cccgccagca ggcgttgctg aaaatcttat atcacaaatg
    10561 tgaatttaat gatgagatgc tggccgaggg agtgatacgc gaaaagatgg gctttaatcc
    10621 gcagactctc cgcgaagtat tgcaggcgtg tcagcaacaa ggttgtgtag caaataacct
    10681 cgatttagat gttgtgatga ttattattaa tggtgccttc agcggaattg ttcaaaactg
    10741 gttaatgaat atggcgggtt atgatcttta taaacaagca cccgcgctgg tcgataacgt
    10801 attaagaatg ttcatgccag atgaaaacat aacgaaatta attcatcaaa cgaatgaatt
    10861 aagtgtcatg taaattcaca ttctgtcctg aaaattcagt tcgtcacagt taaccagttt
    10921 tagtggatta actgagttca tattacggca tttgtctgtt tctgttgtca gcagttcaat
    10981 ccactgcatc agtaaagtat caaacagaaa aacgaagaca gcgaaaacga cgagccacca
    11041 atacttgcga atcattacct gagcctgtgc atgtttaacc aagtctggca ggaaatatac
    11101 acgaaatgaa taatctgaaa accaggctta cacttccttt actttgcaat gagatcgggg
    11161 tcaacttcgc ttaaccggct tcgttttgac aggttgccgg tctttctttt tttcactttc
    11221 gccagttctt ccgcagagta atgcgacgcg acatccagcc gtcgaagccc cattttgatg
    11281 tactcgctgt tgatctcaat accaatgaat tttcgcccgc tggagacggc tacggcaccg
    11341 gtagtaaagc taccggcaaa cgggtcgaga atgatatcgc ctgggttgga agaggcgaga
    11401 ataatgcgtt tcagtaaggc ttccggtttt tgcgtcgggt ggttctcata ttcatccatc
    11461 aaataacgca cgcgcggaaa atcccagacg ttacccggta ctttttgatg attgtatggc
    11521 tgtggaggat ttttgcgata atcgatcaac gcgcgctgcg atccggtttt ggcttctacc
    11581 agaatagcat caccgttgaa tgtgtagttc tttgcgtctt tcaccatcat caggatgggg
    11641 tcgtacatgg agccgtagtg ttttttcgcc tgtactccag aactgtcata tgaccagacg
    11701 atgcgacttt tgatggtaaa aagcttgcgg cactggagat cgataaaggg catgttttcc
    11761 gtgctgttca tgatgtacat gctgccctgc tttttcagaa cgcggtggca ctctgcaatc
    11821 acttcaaaca gccagtcgat aaacagatct tctttccagg cttcgatcag accatcaaaa
    11881 tttttaccga tgttatatgg tgggtcggca aagatcagat cgacactttc ggcggggatc
    11941 tttttaagtt cggcaagcgc atcaccgtga ataatggtct tagcttcatt accaaaccgg
    12001 gtcggttcac atcctgttct catggtcact ccctttgtga cacctataaa aaaggcgctt
    12061 ccccatgccg agtagcgcct ttttaatcaa gcatttagct aacctgaatt agttcatgcc
    12121 gtattttttc aattttttac gcagcgtacc acggttgatg cccatcatca gcgcagcacg
    12181 ggtctggtta ccacgggtgt attgcatcac catgtccaac aggggctgtt ctacttcagc
    12241 cagtaccagc tcatagaggt cattcacatc ctgaccattc agttgagcaa aatagttctt
    12301 cagtgcctgt ttaaccgagt cacgcagggg tttttgggtt acctgatcct gagagttaac
    12361 ggtagaaacg gtcagtacgt cagaatttac gcgttgttcg aacatagttc tgtcagctct
    12421 ttatttctgt ttacgcaaaa ttttcgaagt atgcctccaa cgcctccagc tgttcgctgg
    12481 catcctcaat ggcgttgaat gtgcgccgaa actggtcatt tggagcgtgt tcctggagat
    12541 accaggaaac gtgtttacgt gcaattcggt acccttttgc cggaccataa aagtcatgca
    12601 gttcccgaac gtgcgcgcaa agcaagcgct taacctctgc caaaggcagt gggggcagca
    12661 actccccagt gtccagataa tgctggattt cccgaaagat ccagggtctt ccctgagctg
    12721 cgcggcctat catcagggca tccgcccctg tatagtcgag cacagctctg gctttaagcg
    12781 ggtcagtaat gtcgccattc gcgataaccg gaatggaaac tttctgctta actgcccgaa
    12841 tactgtcgta ctcagcttct ccattgaaca aacaggcgcg tgtacggcca tgaatggtca
    12901 gagcctgaat gccacagtct tcagccagtt gggcaatctc ttcgcagtta cggtgttccg
    12961 gtgcccagcc agtgcgaatc ttcagggtaa caggaacgtc cactgcattg acgacctcgg
    13021 taaggatcga tttaacgaca tccgggtact gcaagagggc tgaacctgcg agcttgcgat
    13081 tcactttttt agccgggcaa cccatattga tatcaataat ctgggcaccg ctttccacgt
    13141 taatacgtgc tgcatctgcc atttctttcg gatcgctacc agcaatttgc acggtgcgaa
    13201 taccgggttc atcaatgtgc accatccgta aacgagattt gtcgctttcc caaacctgtg
    13261 ggttagaaga catcatctcg gatactgtca atccggctcc catctcgtag cacaacgtcc
    13321 gaaaaggtct gtctgtaatg ccagccatgg gcgctgcgat caggcgattt ctgagctgat
    13381 attgtccgat gcgcatgagt taagaaatga ccatactgtg actgcaaggc ggcgtatatt
    13441 acgcattttt tgcacgagat gaaaggccaa actttgacca atcctctgag atggatcaaa
    13501 gaattgcatt taaaatgagc gtggtgcgat aattactcat aaaaatcatc atattagaaa
    13561 atagtgacta aaatttacat tcaaagaaat ttgagtaagt tctcaatttt tctttatgaa
    13621 tgaaaatttt ggcacgcaaa tttgcgtaaa taaccggcaa atttacgtgc cttttgtgag
    13681 cttgctcgca cttcgccccg cgtcacccta cggcgatgcg aaggttaatt cttacgaccg
    13741 gtaatacggc accactcttc tttttccacg accgggtcca gtgcgaagct atcggcataa
    13801 gcttcacaaa cgctctctgc ctggcttgcc agaataccgg aaaggcccag caaaccgcct
    13861 gaaaccggca ggacgctgat taacggtgcc agttcacgta atgggcctgc aaggatgttc
    13921 gcgaccacca cgtcggcttt catttcttct ggctgatctt tcggtaagta gagttccaga
    13981 cggtcagaaa cgccattacg ttcggcgttg tcgcggctag cctgaatcgc ctgcggatcg
    14041 atatcaatac caatggcttt tgctgcaccc agtttcagcg ccgcgatagc cagaatgccg
    14101 gaaccgcagc caaagtcgat gactgtttta ccagttaaat cgaggctgtc gagccattgt
    14161 aggcacagag aggtagttgg atgggtaccc gtaccaaacg ccagccctgg gtctaacatc
    14221 acgttgacgg cgttttcgtc cggcacatca cgccagcttg ggcagatcca cagtcgttca
    14281 ccaaagcgca tcgggtggaa attatccatc cattcgcgct cccagtcttt atcttccagt
    14341 tgttcgattt tatgcgcgaa gcctgcgccg agcagcggat ggttttccag aatcgccacc
    14401 acgtcgttca tatcggtttc agcgtcgaac agaccaatca catcggtgtc gccccacagg
    14461 cgcgtttcgc ccggcagcgg ctcaaatact ggcgtatcgt gggtatcctg aaaagtgata
    14521 gaaacggcac ccgcttccat cagcgcatcg ctaagatctt cagcgttcgc gccggtggtg
    14581 ttcagtttca gttggatcca aggcatggca aaactcttta tttatcagta gtcaaaacgg
    14641 tagcttgcgg gacggatgta ccgaaacggt ttccgaccag gaaagccagc aaacttagta
    14701 gtaacgaggg cacgataggg tggaagccca ggtactgaat attcagcgtc gcgagtacgg
    14761 catacagcac gccgccaacg atcatcgcac ttagcgcgcc tttggcgttg gcgcgttccc
    14821 agtaaagacc cagcaccagc ggccacagga aaacggcttc caacccaccg aaggccagca
    14881 aattcagcca tatgatcatt tctggcggct tccaggcggc aagcagcagc aacgcgccga
    14941 gaactaacgt aattaccgcc gacatccgct tcagacgcgt ctcgttttgc atttgatccg
    15001 gacggatatt cagatagaga tctttaatga tcgtagcgga actttgtagc aattgggcgt
    15061 taattgtcga catgatcgca gccataggtg cagccagaaa gatcccggca gcaaacggtg
    15121 gcagcacttt taccattaac gtcgggatca ccagatccgg tacggtgaga tcggggatca
    15181 ctgcacgacc taacgctccg gccaggtgca taccgaacat caggattgcg actacaatcg
    15241 taccgatgat gatcccccgg tgtaccgctt tgctgtcttt ataagagata cagcgcaccg
    15301 cagtatgcgg caggccaatc acgccaaagc acaccagtac ccagaacgac gtcataaagg
    15361 caggcgacag aatatcgtca gcgccttgtg gcgtaaccag ttgcggatcg atggtttgca
    15421 gcgtctctac cgcattactt aaaccacctg cggcatgtac cacgccaata agcagcacaa
    15481 cggtgccaat cagcatcaca agcccttgca tggtgtcgtt cagcacgctg gcgcgaaagc
    15541 cgccaaaggc ggtatacaac gcaatgctga taccgaaaat cagcagcccg gtttcataag
    15601 gaatacccgc cgcggtttcc agcaggcgcg caccgccgat aaactgcacg gtcattgccc
    15661 caacgaaggc aaccagcaaa ctcaaactcg ccagccacac cagaagacga ctctggtagc
    15721 gggcaaacag catgtcgttc agcgtcactg cattgtagcg gcgcgcaaga atcgcgaact
    15781 tcttgccgag aataccgagc gaaagccaga ctgcaggaag ctgaatcatc gccagcaata
    15841 cccaacccag gccgtattta taagcagctc caggcccgcc gataaacgaa cttgcactga
    15901 tataggtcgc ggtgagcgtc atcgccagca caataccgcc catagagcgg ctgccgagga
    15961 aatactcatt aaggaaggta ccggtgctcc gtttacgcat cgcataaaca gagataccga
    16021 acaccaccac cagataggcg accagcggta gaatcacttc aagctgcatc gtcatcctcc
    16081 agtgggatat cgcgatagat aaatttcacc atcgcccagc acagtccaat aaacagcagc
    16141 ggcgtcagga tgcaggccat ctcaaaccag cgcggaaagc cggtaaaacc gggggcaacg
    16201 tcaggtaagt aagcggctgc taaccaaact gccagataca aaagggtcag ccccagcgcc
    16261 cagcgcgcct ctttatgggc ctgaacaaaa cgagtgtcca cggaagggtt cctcctcatg
    16321 gggggatacg agaaacgggc aattctacgg caactcttca ggcagggaaa ataatctgac
    16381 agaaaattgc cgttcagtgc tgctgcaaaa agtcttcaat gtcagccagt gaggatatcc
    16441 cttccatcgg accttgccgc attacggcga gcgcgccgct ggcatttgca tattgcagtg
    16501 ccttatgtgc cgggaaaccg gataagaaaa gagtgataaa cgttgcgcca aagcagtcgc
    16561 ctgcacccgt tggatcgata atttcgatat cgtggcctgt aacatgctgg gcgtgtaatg
    16621 taccgttttt aagcttgtaa tagctggccc cacgctgggc gcgttttatc gccacatgtt
    16681 ttacgccgcc gtggagaaga tcgctaacaa tctgttcttc tgacagattt ttgtgacgcg
    16741 cgaagaaagg gagttcgctt tcgctgggga tgaaaatatc cgtatattca atcaaataat
    16801 cgagagcctg cgccatttca ggaatgctca gcatctcttt gcgaatattg ggatcgaaag
    16861 aaacggtgcc gccagccgat ttgatcgtcg ttattgcttt acgcatgaca tcgatcatgc
    16921 gaaatgagaa caatgatgag cccacaatat ggagatggtt acactgtttt agcagatcct
    16981 tatcaatgtg ctcagcagta aacaagccgc aggcgctgtt agggatatta aagacgaaat
    17041 cgcgctgctg gggattttga taactcacga acgccgtacc tgtgacggca ttgttcataa
    17101 catggatccc atcggtaatg acaccttcat gacggaggcg ctctataatg agtcggccaa
    17161 aatcatcatt accaacacat ccgaagaaga tggcccgatg ggacagtttt gccacctgag
    17221 cagcaaaaat tgctggcgca ccgctgggaa atggcccgat aaactcccca ggctgagtga
    17281 atttttgatg tgggttgcgg gacaaaaact cggccagcaa ttcgcccata gcgcagatag
    17341 ttattgtcac aaaacccctc tcattcctga agcctttcgc gattggacca ggtaaagcac
    17401 tcattactgg tataaaggat aacgaaatca gccgactgca attgttgctg atattgttcg
    17461 ttaatgctgc ggctgacgat cacattttct gcctgatgca aatgcccgat agcagccgtt
    17521 gatggcgcag gatcggcggc aacgataacc gtcttattct gggcatgatc gaaacagagc
    17581 tgccaggcag cggccagtct gggaacgttg atatttaaag taccatcagc atccagatgg
    17641 ttgatttcca gaatgctatg tgtaatggtg aaatgctgaa gtgcctgttc aagcggtttt
    17701 ccggccagtg cggtgtcggg gcgcagcatt tcactgccag ccagtattat ttcgccatca
    17761 ataaactgat ttgccagcag cgcatgttcg ggatcgttgg tgatcagacg cagttttttc
    17821 acttcgctga gcaatggaat gatcttacgg cagattgtcc catgtccaag aaatagcgtg
    17881 tcacgatcgc gaattaaccg tgcgcaatgt cgtgctattt ccatttgttg tgccagagac
    17941 aatggcgcga tcggttgtat cgcttctggt tcagaggaga gtggtgtcgc aatagcaccg
    18001 ccaaatgatc gctttaaata tccctgttgc tccagataac tgagatcgcc gcggatcgtc
    18061 acgccagaga caccaagttg cgcagataag tcatcaactt tgatttcacc ttgggtggca
    18121 acaatttctg caatttttaa tctgcgtttc agtaggttag acgattttct cggcacgtta
    18181 acactcttca ttggccttta atgcgtaaca ctatagcccc ttgtattttt ctttgaaagt
    18241 tatccttcaa taatatcgac aattcgaaaa gaaaatcatg ggtcaaaaat cgcaataaaa
    18301 atagattaat tcattgaaaa ataaatgaat ttattcatat ttatgcagag atgttattgg
    18361 tttcacttgt aaagtgaaaa acaaattaag ttattttttt gtaagttatt ttgatgatat
    18421 tcgacatgta tcacgctttt tgccgctttt gctgtgctag tttgctttca aaatgaaagt
    18481 gaatattctc tttcttcatt ttgtaaggcg aacgacaaat aacaggagct gcgatgtaca
    18541 tcatttcaag caaaaacatg ctgaaaaaag cccagtcaga gggatatgcc gtccccgctt
    18601 tcaacattca taaccttgaa actttacagg tagttgttga gagcgctgca caacttcgct
    18661 ctcccgttat gctggcggga acacccggta cttatcgtta tggtggcgtg ggaagtttaa
    18721 tttcgttagt acaatcgctg gctcgcgagt acaacctgcc gttagtcctg catctcgacc
    18781 atcatgaaga gagtgatgac atttttaaca aggttcgcgc agggatccgt tctgtcatga
    18841 ttgatggctc ccatttgcca tttgaagaca acattgcgcg agtgcaagaa gttaccacct
    18901 tttgccatcg ctttgatgtt agcgttgagg ccgagctagg gcgtcttggc ggccaggagg
    18961 acgatctgct ggtggatgaa aaagattccg cttatacctc accagccgca gctgcagagt
    19021 ttgttcaacg tacccaaatt gactccctgg ccgtagcaat cggcacagca catggtttat
    19081 atgcgcatga accacgactg gattttgtgc ggctggaaca gattcgtcag cgagtggaga
    19141 ttccactggt gttgcatggt gcttcgggct tatcagaaca ggacgttcag cactgtattc
    19201 gccgcggtat ttgtaaagtg aatgtcgcga cagaattgaa aattgcgttt gccgatgcgt
    19261 taaaaggata tttctacaac aatcctgcgg caaatgatcc acgccactat atgcagcccg
    19321 caaaggccgc catgaaagaa gtcgtaactc gtattattgg tgtctgtggt agtgaaggaa
    19381 aaatttaaga cgttgtaccc tacaaaaaca atgaggattg tttatgaaaa atattaaatt
    19441 acttggttca gctatgttgg tgagcctggc attgttctcg caaaattcgt tggcaaaaga
    19501 gtataaaatt ggtgcgtcat tattaacaca gcaacatcct ttctatattg atcttgcgaa
    19561 tgccatgaaa gaagaggcaa aaaaagacaa tgtcaattta agtgtct
//
LOCUS       DADMJB010000069        19593 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.069, whole genome shotgun sequence.
ACCESSION   DADMJB010000069 DADMJB010000000
VERSION     DADMJB010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19593
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.069"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(188..529)
                     /locus_tag="JN078_002163"
     CDS             complement(188..529)
                     /locus_tag="JN078_002163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase"
                     /protein_id="HAY9041362.1"
                     /translation="MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGA
                     VPGNGTVHGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVEGLKL
                     IESGDWLDRDK"
     gene            complement(532..4311)
                     /gene="tamB"
                     /locus_tag="JN078_002164"
     CDS             complement(532..4311)
                     /gene="tamB"
                     /locus_tag="JN078_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter assembly complex protein TamB"
                     /protein_id="HAY9041363.1"
                     /translation="MSLWKKISLGVVIVILLLLGSVAFLVGTTSGLHLVFKAADRWVP
                     GLDIGKVTGGWRDLTLSDVRYEQPGVAVKAGNLHLAVGLECLWNSSVCINDLALKDIQ
                     VNIDSKKMPPSEQVEEEEDSGPLDLSTPYPITLTRVALDNVNIKIDDTTVSVMDFTSG
                     LNWQEKTLTLKPTSLKGLLIALPKVAEVAQEEVVEPKIENPQPDEKPLGETLKDLFSR
                     PVLPEMTDLHLPLNLNIEEFKGEQLRVTGDTDITVRTMLLKVSSIDGNTKLDALDIDS
                     NQGIVNASGTAQLSDNWPVDITLNSTLNVEPLKGEKVKLKVGGALREQLEIGVNLSGP
                     VDMDLRAQTRLAEAGLPLNVEVNSKQLYWPFTGEKQYQADDLKLKLTGKMTDYTLSMR
                     TAVKGQEIPPATITLDAKGNEQQVNLDKLTVAALEGKTELKALLDWQQAISWRGELTL
                     NGINTAKEFPEWPSKLNGLIKTRGSLYGGTWQMEVPELKLTGNVKQNKVNVDGTLKGN
                     SYMQWMIPGLHLELGPNSAEVKGELGVKDLNLDATINAPGLDNALPGLGGTAKGLVKV
                     RGTVEAPQLLADITARGLRWQELSVTQVRVEGDIKSTDQIAGKLDVRVEQISQPDVNI
                     NLVTLNAKGSEKQHELQLRIQGEPVSGQLNLAGSFDRKEERWKGTLSNTRFQTLVGPW
                     SLTRDIALDYRNKEQKISIGPHCWLNPNAELCVPQTIDAGAEGRAVVNLNRFDFAMLK
                     PFMPETTQASGIFTGKADVAWDTTKEGLPQGSITLSGRNVQVTQTVNDAALPVAFQTL
                     NLTAELRNNRAELGWTIRLTNNGQFDGQVLVTDPQGRRNLGGNVNIRNFNLAMINPIF
                     TRGEKAAGMVSANLRLGGDVQSPQLFGQLQVTGVDIDGNFMPFDMQPSQLAVNFNGMR
                     STLAGTVRTQQGEIYLNGDADWSQIENWRARVTAKGSKVRITVPPMVRMDVSPDVVFE
                     ATPNLFTLDGRVDVPWARIVVHDLPESAVGVSSDVVMLNDNLQPEEPKTASIPINSNL
                     IVHVGNNVRIDAFGLKARLTGDLNVVQDKQGLGLNGQINIPEGRFHAYGQDLIVRKGE
                     LLFSGPPDQPYLNIEAIRNPDATEDDVIAGVRVTGLADEPKAEIFSDPAMSQQAALSY
                     LLRGQGLESDQSDSAAMTSMLIGLGVAQSGQIVGKIGETFGVSNLALDTQGVGDSSQV
                     VVSGYVLPGLQVKYGVGIFDSIATLTLRYRLMPKLYLEAVSGVDQALDLLYQFEF"
     gene            complement(4308..6041)
                     /gene="tamA"
                     /locus_tag="JN078_002165"
     CDS             complement(4308..6041)
                     /gene="tamA"
                     /locus_tag="JN078_002165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter assembly complex protein TamA"
                     /protein_id="HAY9041364.1"
                     /translation="MRYIRQLCCVSLLCLSGSAVAANVRLQVEGLSGQLEKNVRAQLS
                     TIESDEVTPDRRFRARVDDAIREGLKALGYYQPTIEFDLRPPPKKGRQVLIAKVTPGV
                     PVLIGGTDVVLRGGARTDKDYLKLLDTRPAIGTVLNQGDYENFKKSLTSIALRKGYFD
                     SEFTKAQLGIALGLHKAFWDIDYNSGERYRFGHVTFEGSQIRDEYLQNLVPFKEGDEY
                     ESKDLAELNRRLSATGWFNSVVVAPQFDKARETKVLPLTGVVSPRTENTIETGVGYST
                     DVGPRVKATWKKPWMNSYGHSLTTSTSISAPEQTLDFSYKMPLLKNPLEQYYLVQGGF
                     KRTDLNDTESDSTTLVASRYWDLSSGWQRAINLRWSLDHFTQGEITNTTMLFYPGVMI
                     SRTRSCGGLMPTWGDSQRYSIDYSNTAWGSDVDFSVFQAQNVWIRTLYDRHRFVTRGT
                     LGWIETGDFDKVPPDLRFFAGGDRSIRGYKYKSIAPKYANGDLKGASKLITGSLEYQY
                     NVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGVGVRWESPVGPIKLDFAVPVADKDEHG
                     LQFYIGLGPEL"
     gene            6247..6885
                     /gene="msrA"
                     /locus_tag="JN078_002166"
     CDS             6247..6885
                     /gene="msrA"
                     /locus_tag="JN078_002166"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HAY9041365.1"
                     /translation="MSLFDKKHLVSPADALPGRNTPMPVATLHAVNGHSMTNEPDGME
                     IAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYD
                     PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAA
                     MLAADDDRHITTEIANATPFYYAEDDHQQYLHKNPYGYCGIGGIGVCLPPEA"
     gene            7208..8551
                     /locus_tag="JN078_002167"
     CDS             7208..8551
                     /locus_tag="JN078_002167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HAY9041366.1"
                     /translation="MLNSILVILCLIAVSAFFSMSEISLAASRKIKLKLLADEGNINA
                     QRVLNMQENPGMFFTVVQIGLNAVAILGGIVGDAAFSPAFHSLFSRYMSAELSEQLSF
                     ILSFSLVTGMFILFADLTPKRIGMIAPEAVALRIINPMRFCLYVCTPLVWFFNGLANM
                     IFRIFKLPMVRKDDITSDDIYAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTP
                     RENVIWFDLHEDEQSLKNKVAEHPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLA
                     LNSGVQIRNTLIVPDTLTLSEALESFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMG
                     DLVGQGLEEQIVARDENSWLIDGGTPIDDVMRVLDIDEFPQSGNYETIGGFMMFMLRK
                     IPKRTDSVKFAGYKFEVVDIDNYRIDQLLVTRIDSKATALSPKLPDAKDKEESVA"
     gene            complement(8613..8819)
                     /locus_tag="JN078_002168"
     CDS             complement(8613..8819)
                     /locus_tag="JN078_002168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1107 domain-containing protein"
                     /protein_id="HAY9041367.1"
                     /translation="MKIFQRYNPLQVAKYVKILFRGRLYIKDVGAFEFDKGKILIPKV
                     KDKLHLSVMSEVNRQVMRLQTEMA"
     gene            9144..9698
                     /locus_tag="JN078_002169"
     CDS             9144..9698
                     /locus_tag="JN078_002169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtfJ family protein"
                     /protein_id="HAY9041368.1"
                     /translation="MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDK
                     DQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNT
                     DDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVARGAWQLDEESSAVVVLDKDGRVQ
                     WAKDGALTQEEVQQVMDLLQKLLK"
     gene            complement(9788..10699)
                     /locus_tag="JN078_002170"
     CDS             complement(9788..10699)
                     /locus_tag="JN078_002170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041369.1"
                     /translation="MLPRIRHNNFIGAVELFVKSSHTKTHSNNFFNNIQHAFKKKDWV
                     SNYDSLLTLWEFFRCATQIDKDSYQVLSSKNETVKAMDKFLISFSLKDNGAEYTMTLR
                     GSGFEYEEIPITINEYNSFMDFKNREFPLEQNRRLYAWDILQKKQSDIPKRIKGYIHQ
                     AIGDVSLGYALLEDIVSKLKRGKFELQIPGGGIKECDGWYIYEKIIDDNFAIVIESLG
                     FALKIYGGDERFRNGSSVVLEDEDYSLIYNFLVNAGCQQVELAEQVDAIVSANLAVDS
                     DITEEEICEKYKSTIEAFKKEQLALPV"
     gene            complement(10911..11651)
                     /gene="cysQ"
                     /locus_tag="JN078_002171"
     CDS             complement(10911..11651)
                     /gene="cysQ"
                     /locus_tag="JN078_002171"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HAY9041370.1"
                     /translation="MLDQVCQLARNAGDAIMQVYDGTKPMDVVSKADNSPVTAADIAA
                     HTVIMDGLRTLTPDIPVLSEEDPPGWEVRQHWQRYWLVDPLDGTKEFIKRNGEFTVNI
                     ALIDHGKPILGVVYAPVMNVMYSAAEGKAWKEECGVRKQIQVRDARPPLVVISRSHAD
                     AELKEYLQQLGEHQTTSIGSSLKFCLVAEGQAQLYPRFGPTNIWDTAAGHAVAAAAGA
                     HVHDWQGKPLDYTPRESFLNPGFRVSIY"
     gene            11841..13784
                     /gene="cpdB"
                     /locus_tag="JN078_002172"
     CDS             11841..13784
                     /gene="cpdB"
                     /locus_tag="JN078_002172"
                     /EC_number="3.1.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2',3'-cyclic-nucleotide 2'-phosphodiesterase"
                     /protein_id="HAY9041371.1"
                     /translation="MIKFSATLLATLIAASVNAATVDLRIMETTDLHSNMMDFDYYKD
                     TATEKFGLVRTASLINDARNEVKNSVLVDNGDLIQGSPLADYMSAKGLKAGDVHPVYK
                     ALNTLDYTVGTLGNHEFNYGLDYLKNALAGAKFPYVNANVIDARTKQPMFTPYLIKDT
                     EVVDKDGKKQTLKIGYIGVVPPQIMGWDKANLSGKVTVNDITETVRKYVPEMREKGAD
                     VVVVLAHSGLSADPYKVMAENSVYYLSEIPGVNAIMFGHAHAVFPGKDFADIEEADIT
                     KGTLNGVPAVMPGMWGDHLGVVDLQLSNDSGKWQVTQAKAEARPIYDIANKKSLAAED
                     SKLVETLKADHDATRQFVSKPIGKSADNMYSYLALVQDDPTVQVVNNAQKAYVEHYIQ
                     GDPDLAKLPVLSAAAPFKVGGRKNDPASYVEVEKGQLTFRNAADLYLYPNTLIVVKAS
                     GKEVKEWLECSAGQFNQIDPNSTKPQSLINWDGFRTYNFDVIDGVNYQIDVTQPARYD
                     GECQMINANAERIKNLTFNGKPIDPNAMFLVATNNYRAYGGKFAGTGDRHIAFASPDE
                     NRSVLTAWIADESKRAGEIHPAADNNWRLAPIAGDKKLDIRFETSPSDKAAAFIKEKG
                     QYPMNKVATDDIGFAIYQVDLSK"
     gene            complement(13913..14293)
                     /locus_tag="JN078_002173"
     CDS             complement(13913..14293)
                     /locus_tag="JN078_002173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418633.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HAY9041372.1"
                     /translation="MSQVSLSQQLKEGNLFAEQCPSREVLKHVTSRWGVLILVALREG
                     THRFSDLRRKIGGGSEKMLAQSLQALEQDGFLNRIAYPVVPPHVEYSLTPLGEQVSEK
                     VAALADWIELNLPEVLAVRDEHAA"
     gene            14382..15242
                     /gene="qorB"
                     /locus_tag="JN078_002174"
     CDS             14382..15242
                     /gene="qorB"
                     /locus_tag="JN078_002174"
                     /EC_number="1.6.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H:quinone oxidoreductase"
                     /protein_id="HAY9041373.1"
                     /translation="MIAITGATGQLGHYIIESLMKTVPASQIVAIVRNPAKAQALAAQ
                     GITVRQADYGDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYT
                     SLLHADTSPLGLADEHIETEKMLADSGIVYTLLRNGWYSENYLASAPAALEHGVFIGA
                     AGDGKIASATRADYAAAAARVISEAGHEGKVYELAGDSAWTLTQLAAELTKQSGKQVT
                     YQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDNSKTLSKLIGRPTTTLAE
                     SVSHLFNVNN"
     gene            15350..16315
                     /locus_tag="JN078_002175"
     CDS             15350..16315
                     /locus_tag="JN078_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418631.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HAY9041374.1"
                     /translation="MISGVLYALLAGLMWGLIFVGPLIVPEYPAMLQSMGRYLALGLI
                     ALPIAWLGRVRLRQLARRDWLTALMLTMMGNLIYYFCLASAIQRTGAPVSTMIIGTLP
                     VVIPVFANLLYSQRDGKLAWGKLAPALVCIGIGLACVNIAELNHGLPDFDWARYTSGI
                     VLALVSVVCWAWYALRNARWLRENPDKHPMMWATAQALVTLPVSLIGYLVACYWLNTQ
                     TPDFSLPFGPRPLVFISLMVAIAVLCSWVGALCWNVASQRLPTVILGPLIVFETLAGL
                     LYTFLIRQQMPPLMTLSGIALLVVGVVIVVRAKPEKPLTESVSES"
     gene            16423..17085
                     /gene="ytfE"
                     /locus_tag="JN078_002176"
     CDS             16423..17085
                     /gene="ytfE"
                     /locus_tag="JN078_002176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster repair protein YtfE"
                     /protein_id="HAY9041375.1"
                     /translation="MAYRDQPLGELALSIPRASALFRKYNMDYCCGGKQTLARAAARK
                     ELDVEVIEAELAKLAEQPIEKDWRSAPLAEIIDHIIVRYHDRHREQLPELILQATKVE
                     RVHADKPSVPKGLTKYLTMLHEELSSHMMKEEQILFPMIKQGMGSQAMGPISVMESEH
                     DEAGELLEVIKHTTNNVTPPPEACTTWKAMYNGINELIDDLMDHISLENNVLFPRALA
                     GE"
     gene            complement(17130..18542)
                     /gene="cycA"
                     /locus_tag="JN078_002177"
                     /gene_synonym="dagA"
     CDS             complement(17130..18542)
                     /gene="cycA"
                     /locus_tag="JN078_002177"
                     /gene_synonym="dagA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-serine/D-alanine/glycine transporter"
                     /protein_id="HAY9041376.1"
                     /translation="MVDQVKVVADDQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFLG
                     SGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWTGYF
                     TGWTYWFCWVVTGMADVVAITAYAQFWFPDLSDWVASLAVIVLLLTLNLATVKMFGEM
                     EFWFAMIKIVAIVSLIVVGLVMVAMHFQSPTGVEASFAHLWNDGGWFPKGLSGFFAGF
                     QIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSV
                     VPEKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKA
                     FAKLSKRAVPAKGLTFSCICLLGGVVMLYVNPSVIGAFTMITTVSAILFMFVWTIILC
                     SYLVYRKQRPHLHEKSIYKMPLGKLMCWVCMAFFVFVVVLLTLEDDTRQALLVTPLWF
                     IALGLGWLFIGKKRAAELRK"
     gene            complement(18851..19471)
                     /locus_tag="JN078_002178"
     CDS             complement(18851..19471)
                     /locus_tag="JN078_002178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313212.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HAY9041377.1"
                     /translation="MTTPTFDTIEAQASYGIGLQVGQQLSESGLEGLLPEALVAGIAD
                     ALEGKHPAVPVDVVHRALREIHERADAVRRQRFQAMAAEGVKYLEENAKKEGVNSTES
                     GLQFRVINQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNGVIPGWIE
                     ALTLMPVGSKWELTIPQELAYGERGAGASIPPFSTLVFEVELLEIL"
BASE COUNT         4797 a         5189 c         4774 g         4833 t
ORIGIN      
        1 tactcaccgt tcaaagcgtg cccccgtttt acccctgcac atttgtgaac gccagcagag
       61 ttttttatgc gattgcagat atggaaagcg gctcggagag aaaagcaaaa gatggaaaag
      121 ttacaaaaaa aaatcgcgag atacatcgca taaaacaacg ccacccgaag gtggcgtgct
      181 tttattatta cttatccctg tctaaccagt cgccgctttc aattagcttt aatccctcga
      241 cgggtcgttg ataaacgtac atccatgcac tcccgtacgg cgtctgaatc aactggcgcg
      301 cgtattcacc gcccctggtg cgcaaggcat caagttcggc cagcgtggcg ttgtcaatac
      361 gataaacttc accgtgtacc gttccgttcc ccggaactgc gcctggatag tggcccaggc
      421 tatacaactg gtagttatcg atactgaaat cgcccagtaa ctgggcattg gtcatccagt
      481 gactgttgcc ttgtttgtgg cgtaaactgc cgtagacaaa tattcgcatt gctaaaactc
      541 gaactgatag agcaaatcca gtgcctggtc tacaccagac acggcttcca gatatagctt
      601 aggcatcagg cgataacgta acgtgagtgt tgctatagag tcaaatatac ccacgccgta
      661 tttcacttgc aggcctggca atacatagcc gctgaccact acctgggagg agtcgcctac
      721 tccctgggtg tcgagcgcta aattgcttac gccaaacgtc tcgccgattt tacccacaat
      781 ctggccactt tgcgcaaccc ccagaccaat cagcatcgag gtcattgccg cactgtcgct
      841 ctgatcgctc tccagccctt gtccacgtag caaataagac aatgcagctt gttgcgacat
      901 cgccgggtca gagaagatct ccgctttcgg ttcgtccgcc agaccagtga cgcgaactcc
      961 ggcgattacg tcgtcttctg tagcatccgg gttacgaata gcttcaatat taagatacgg
     1021 ttgatctggc ggaccagaga acagtagctc acccttacgc acaatcagat cctgaccata
     1081 ggcatggaag cgcccttcag ggatgttgat ctgcccgttc aggcccagcc cttgtttgtc
     1141 ctgaacgacg ttaagatcgc ccgtcagccg cgctttcagg ccaaaggcgt caatgcgcac
     1201 attgttgcca acgtggacaa tcaggttact gttaatcgga atcgacgccg ttttcggctc
     1261 ttccggttgc aggttatcgt taagcatcac cacatcgctg gagacgccta ctgcgctttc
     1321 cggcagatcg tgcaccacga tgcgcgccca cgggacatcc acgcgaccat cgagggtaaa
     1381 caggtttggt gtagcctcga atacaacatc tggcgataca tccattcgta ccatcggcgg
     1441 cacggtgatc cgcactttac tgcctttcgc cgttactcgt gcccgccagt tttcaatttg
     1501 gctccagtcg gcatcaccgt tcaggtagat ttcaccctgc tgggtccgta ctgtaccggc
     1561 aagcgtcgag cgcataccgt taaagttgac cgcaagctgg ctcggctgca tatcaaacgg
     1621 cataaagttg ccgtcgatat ccacacccgt aacctgaagc tgaccaaaca actgcgggct
     1681 ttgcacatca ccacccagac gcaagttggc actcaccatc cccgctgctt tttccccacg
     1741 agtaaagatg gggtttatca tcgcaaggtt gaagttacgg atattgacgt tgccaccaag
     1801 attacggcgg ccttgcggat cggtcaccag cacctgtcca tcaaactggc cgttattggt
     1861 caggcggatg gtccagccca attcggcacg gttgttacgc aattccgccg tcagattcag
     1921 tgtctgaaac gccaccggca gcgccgcatc gttgacggtt tgcgttacct gcacgttacg
     1981 ccccgaaagg gtgatactgc cctgcggcag cccctctttc gtggtgtccc aggcaacatc
     2041 cgctttaccc gtgaagatac cgctggcctg agtggtttct ggcataaacg gtttcagcat
     2101 ggcgaagtcg aagcggttga gattcaccac cgcacgccct tcggcccccg catcgatagt
     2161 ttgcggcacg cacagttccg cattcgggtt aagccagcag tgtggcccga tgctgatttt
     2221 ttgctcctta ttgcggtaat ccagcgcaat atcgcgggtc agcgaccacg ggccgaccag
     2281 cgtctggaag cgggtattgc taagagttcc cttccagcgt tcttctttgc gatcaaaact
     2341 tcctgccaga ttaagctgcc cggagacagg ctcgccctga atccgcaact gtagctcgtg
     2401 ctgcttttcg ctgcctttgg cattcagggt gacgaggttg atatttacat ccggctgcga
     2461 aatttgctca acgcgtacgt cgagtttccc ggcgatctga tcggtggatt taatgtcgcc
     2521 ttccacgcga acctgcgtca cggaaagttc ctgccagcgc aggccgcgcg cggtgatatc
     2581 tgccagtagt tgtggcgctt ccaccgtgcc gcgtactttc accagccctt tcgctgtacc
     2641 gccaagcccc ggcagcgcgt tatccagccc cggcgcgttg atggtggcat caagattgag
     2701 atcttttacc cccagctcgc ctttcacttc ggcactgttt ggccccagtt ccagatgaag
     2761 cccagggatc atccactgca tataactgtt gcctttcagc gtgccgtcaa cgttcacttt
     2821 gttctgtttg acgttaccgg tcagcttcag ttctggcacc tccatctgcc aggtgccgcc
     2881 gtacaggcta ccgcgggttt taatcaagcc attgagtttc gacggccact ccgggaactc
     2941 tttggcggtg ttaatgccat taagcgttag ctcaccgcgc caactaatgg cctgctgcca
     3001 gtcgagcaac gccttgagtt cagttttccc ttccagcgcc gcgacggtga gtttgtcgag
     3061 attgacctgc tgttcattac ctttggcatc aagggtaatg gtggctggcg ggatctcctg
     3121 tcccttcact gccgtacgca tagagagcgt gtaatcggtc attttgccgg taagtttcag
     3181 tttcagatca tccgcctgat actgcttctc accagtgaac ggccagtaaa gctgtttgct
     3241 gttcacttcc acgttgagcg gcaatccggc ttccgccagt cgcgtctggg cgcgtaaatc
     3301 catatccacc ggaccggaaa gattaacgcc aatctccagc tgttcgcgca gcgcgccgcc
     3361 cacttttagc ttcacttttt cacctttcaa cggctccacg ttcagtgtgc tgttgagggt
     3421 gatatccacc ggccagttgt ctgacagctg cgccgtgccg ctggcgttga cgatcccctg
     3481 gttggaatcg atatccaggg cgtccagttt agtattgccg tcaatgctgc tcactttcag
     3541 cagcatggtg cgcacggtga tgtccgtgtc gcccgtcacg cgtaactgct cgcctttaaa
     3601 ctcttcaatg ttcaggttaa gcggcaaatg caagtcggtc atttccggca ataccgggcg
     3661 agaaaagaga tctttcagcg tttcgccgag cggcttttca tccggctgcg gattttcaat
     3721 tttcggttcg accacttctt cctgcgccac ttccgccact ttcggcagag caatcagcag
     3781 gcctttcagc gacgtcggtt tcagggtcag ggttttctcc tgccagttca ggccggaggt
     3841 gaagtccatc accgacaccg tggtgtcatc aatcttgatg ttgacgttgt ccagcgccac
     3901 ccgtgtcagg gtgatgggat acggcgtgga gagatccagc ggaccgctat cttcctcttc
     3961 ttcaacctgt tcagaaggag gcattttttt actgtcgatg ttgacctgaa tgtctttcag
     4021 cgccaggtca ttaatacaaa cgctactgtt ccacaggcac tcaagaccga ccgccagatg
     4081 cagattaccc gcttttaccg ccacgcctgg ctgctcataa cgaacgtcag acaaggtgag
     4141 atcgcgccag ccgccggtga ccttgccaat atccagtcct ggcacccagc gatccgccgc
     4201 tttaaataca agatgcaggc cgctggtggt gcccaccaga aacgccaccg atcccagcaa
     4261 cagtaagata acgataacca cgccgaggct gatttttttc cataaactca taattctggc
     4321 cccagaccga tgtaaaactg taacccgtgt tcgtctttat ccgcgaccgg tacggcaaaa
     4381 tcgagtttga ttggcccgac cggcgattcc cagcgcacgc cgaccccggt accggtttta
     4441 aagtcgctgc ggcgaatatc gcttaccgct tcgccactat cgacaaacac cgcgccccac
     4501 cattttccgg tcacgttgta ctggtattcc agcgatccgg ttatcaactt cgaggcccct
     4561 ttcaggtcac cgttggcgta tttcggggcg atagatttgt atttgtagcc gcgaatactg
     4621 cgatcgcccc cggcgaaaaa acgcagatcc ggcggtactt tgtcgaaatc accggtttca
     4681 atccagccca gcgtgccgcg tgtaacgaaa cgatggcgat cgtacagtgt gcggatccag
     4741 acgttctgcg cctggaaaac ggagaaatcg acatctgagc cccaggccgt gttggagtag
     4801 tcgatagagt agcgttgcga gtcgccccag gttggcatca ggccaccaca agaacgcgtg
     4861 cggctaatca tcaccccagg ataaaacagc atcgtggtgt tggtaatttc accctgagta
     4921 aagtggtcga gactccagcg caggttaatg gcacgctgcc aaccgctgga gagatcccag
     4981 tagcgagaag ccaccagcgt agtggagtca gattcggtat cgttcaggtc agtgcgctta
     5041 aaaccgccct gcaccaaata atattgttcc agtggattct tcagcagcgg cattttatag
     5101 ctgaagtcga gggtctgttc cggcgcggaa atactggtac tggtggtcaa actgtgaccg
     5161 tatgagttca tccacggctt tttccacgtc gctttcacgc gcggtcccac gtccgtagag
     5221 taaccgaccc cggtttcgat ggtgttttct gttcgcggcg aaaccacgcc cgtcaatggt
     5281 aatactttcg tttcgcgcgc tttatcaaat tgtggagcca ccaccaccga gttaaaccag
     5341 ccggtagcag aaagtcggcg gttcagttcc gccagatctt tcgattcata ctcatcgccc
     5401 tctttaaacg gcaccagatt ttgcaggtat tcatcgcgga tttgtgatcc ttcaaaggtc
     5461 acatgcccaa agcggtaacg ttcgccactg ttataatcaa tatcccagaa ggctttatgc
     5521 aggccgagcg caatgcccag ctgcgctttg gtaaattcgc tatcgaaata acctttacgc
     5581 aacgcaatac tggttaagga ctttttgaaa ttttcataat cgccctggtt cagtaccgta
     5641 ccaatagccg ggcgagtatc gagcaatttc aaatagtctt tatcggtccg cgcgccgccg
     5701 cgcaatacca catcggtgcc gccaattaac accggcacac ctggcgtgac tttggcgatc
     5761 aatacctgcc gccctttctt tggcggtgga cggagatcaa attcaatggt cggctggtaa
     5821 taacccagcg ctttcagacc ttcacggatg gcatcatcga cgcgtgcgcg aaagcggcgg
     5881 tctggcgtca cttcatcact ttcaatcgta gaaagctgcg cacgaacgtt cttttccagc
     5941 tgtcccgata acccctcgac ctgtagacgg acgttcgcgg cgacggcaga tccgcttaag
     6001 cagagtaagc ttacacagca taactgtcgg atatagcgca cattttctcc tgaatatcct
     6061 tttttcctgc ccctggaacg ccgttaaacg gcttaacaaa aatccagtaa tatggattaa
     6121 aaagcagact aaaccccaaa tatttcttat gttttacttt agacctattc acggtggtta
     6181 ttgtgtgcaa atacgcctct tgttacaacc ttaaccccaa tgaccgattt tcgggagagc
     6241 gacaccatga gtttatttga taaaaagcat ctggtttccc ccgccgatgc cctgcctgga
     6301 cgtaacaccc cgatgcccgt agccacgctg catgcggtca acggtcactc aatgaccaat
     6361 gaacctgacg gaatggagat tgccattttt gcgatgggtt gtttctgggg tgtggagcgt
     6421 ctgttctggc agttacccgg cgtttacagc accgccgcag gctataccgg cggctatacg
     6481 ccaaatccga cttatcggga agtgtgctcc ggtgatacgg gtcatgccga agcggtacgc
     6541 attgtttacg atccttccgt catcagctat gagcagttgc tacaggtatt ttgggagaat
     6601 cacgatcccg cccagggaat gcgtcagggc aatgaccacg gcacgcagta tcgttcagcg
     6661 atttatccgc tgaccccaga acaggatgcc gcagctcgcg ccagtctgga acgttttcag
     6721 gcggcgatgc ttgccgccga tgacgatcgt cacatcacca cggaaatcgc taacgccaca
     6781 ccgttttatt atgccgaaga tgaccaccag caatatctgc ataaaaaccc atatggttac
     6841 tgtggaattg gcggaattgg cgtctgtctg ccgccggaag catagcgtta cgggtacaaa
     6901 tgtagtttgt tgataaagtg ctctttgtct atgcctgatg cggcttaaac gacttaccag
     6961 gcctacaaaa tcgtccaaat tcaatatatt gcaaggactg cgtaggcctg atcggcatag
     7021 cgcatcaggc agtattgcat ttatcagcag tctgaatttt aaccctctgg cgactttaca
     7081 gtaccttacg ctatactagc cactgaaaat tccggttcac tttcttcgaa tcggctttca
     7141 atgtgtattt cacacaaatt aatcaacttt cccttccgag gatctggcct gaaaggtcgg
     7201 ataagatatg ttaaacagta ttttagtcat actctgcttg atcgctgtaa gtgcgttctt
     7261 ctcgatgtcc gagatctcgc ttgccgcctc acgcaaaatc aaacttaaac tgctggctga
     7321 tgaaggcaat ataaatgccc aacgcgttct gaatatgcag gaaaatcccg gcatgttctt
     7381 taccgtggtc caaatcggtc tgaacgcagt ggcgattctc ggcggtatcg tcggtgatgc
     7441 ggcattttct ccagcttttc acagcctgtt ctcccgctat atgtcggcag agctctctga
     7501 gcaactgagc tttattctct ctttctcgtt agtgactggc atgtttatcc tgtttgcgga
     7561 tttaaccccg aaacgcatcg gtatgattgc gccagaagcg gtggctttgc gtatcatcaa
     7621 cccgatgcgc ttctgcctgt acgtttgcac cccgctggtg tggttcttca acggcctggc
     7681 gaacatgatc ttccgtattt tcaaactgcc aatggtacgt aaagatgaca tcacttctga
     7741 tgacatctac gcggtagtgg aagccggtgc gctggcgggc gtgttacgta aacaggaaca
     7801 cgagctgatt gaaaacgtct ttgagctgga atcccgtacc gttccgtctt caatgacacc
     7861 gcgtgaaaac gtgatttggt ttgatctcca cgaagatgag caaagcctga agaataaggt
     7921 ggcggaacat ccgcactcta agttcctcgt ctgtaatgaa gatattgacc acatcatcgg
     7981 ttatgtcgat tctaaagacc tgctgaaccg cgtgctggct aaccaaagcc tggcactgaa
     8041 cagcggcgta caaattcgca acacgctgat tgtgccggat acgttaaccc tttcagaggc
     8101 gttggaaagt tttaaaaccg caggtgaaga cttcgcggtg atcatgaacg agtacgcgct
     8161 ggtggtgggg atcatcaccc tcaacgacgt gatgaccacg ctgatgggcg atctggtcgg
     8221 tcaggggctg gaagagcaga ttgtcgcccg tgatgagaac tcatggctga ttgacggcgg
     8281 caccccaatt gacgacgtca tgcgcgtgct ggatattgac gagttcccgc agtcgggcaa
     8341 ctacgaaacc atcggcggct ttatgatgtt tatgctgcgt aagatcccga aacgcaccga
     8401 ttcggtgaaa ttcgccggct acaaatttga agtggtggat atcgataact accgcatcga
     8461 ccagctgctg gtgacccgga tcgacagcaa ggccaccgcc ctttcgccaa aactgcctga
     8521 cgctaaagat aaagaagaaa gcgtcgcgta acccccagaa acatcaacgg ctcctgaatc
     8581 aggagccgtc ttattactgc atagcacttt ggttaagcca tctctgtttg cagacgcata
     8641 acctgacggt taacttcgga catcactgac aaatgcagct tatccttcac ttttgggata
     8701 agaatcttac ccttatcaaa ttcaaaagcg ccaacgtcct tgatgtataa ccgtccacgg
     8761 aacaggatct ttacgtactt cgccacctga agtgggttgt accgttggaa aattttcatt
     8821 gttatctcct gctgagtatt acgcctgtgc ggtgccacaa tcggcccaac tattatgaga
     8881 cgcaaatttt aatgcttagt gactatagac tatccgggca atgtttccac cgcgtataac
     8941 tttttttacc taaaggttac aattattcag aattatcttt ttaccgaagc gcggtcttca
     9001 gtataagcat tcatttttca tatgatttgt gcgcttgacc gcaaactggc atcacacttg
     9061 cgggaaattc gataaatagc acatatgatt aaaactcaga tccaagtggt cggatcacct
     9121 gcatatcata agaaggaaac accatgaccc tacgcaagat tctggcactc acctgcctgc
     9181 tgttgccgat gatggcttcc gcacatcagt tcgaaaccgg tcagcgagtg ccgccgattg
     9241 gcattaccga tcggggcgag ttggtgcttg ataaagatca gtttagctac aaaacctgga
     9301 acagcgcgca gttagtggga aaagtgcgag tactgcaaca tattgctggt cgcacctctg
     9361 caaaagagaa aaacgcgacg ctgattgaag cgattaaatc agcaaagtta ccgcacgatc
     9421 gttaccagac caccaccatt gttaacaccg acgacgcaat tccgggttcc ggcatgtttg
     9481 tgcgcagcag tctggagagt aataaaaagc tttatccctg gtcgcagttt attgtcgata
     9541 gcaatggcgt cgcgcgcggt gcctggcagc tggatgaaga aagttccgct gtagtggtgc
     9601 tggataagga tggtcgcgtg caatgggcca aagacggggc gctcacacag gaagaggtgc
     9661 agcaagtgat ggacctgctg caaaagttgc tcaaataatg gcaataacat aaattctgca
     9721 aaaataattt tcccctatcg ttatctatgg gataggggaa ttaggtctct gagctcttac
     9781 accgaactca tactggtaac gctagttgct cttttttaaa cgcctcaatg gttgatttat
     9841 atttctcgca aatctcctct tcggtaatat cactatctac ggccagattc gcacttacta
     9901 tcgcatccac ttgttcggct aattcgactt gttggcaacc tgcattaacc agaaaattat
     9961 aaataagaga gtaatcttca tcctccaaaa caacagagga accattacga aaacgttcat
    10021 cccctccata gattttaagc gcaaagccca aagattctat gactatggca aaattatcat
    10081 caattatttt ttcgtaaata taccatccat cgcattcttt aattccacct cctggtattt
    10141 ggagttcaaa tttaccccgt tttaatttgc ttactatatc ctccaataag gcataaccta
    10201 aagacacgtc accaatcgcc tggtgaatat aacctttaat ccttttcggt atgtcagact
    10261 gttttttctg cagaatatcc caagcataca atcttctgtt ttgttctaac ggaaattcac
    10321 ggtttttgaa atccatgaat gagttatact catttattgt tatggggatt tcttcgtatt
    10381 caaatccact gcctcgcaat gtcattgtat attcggcacc gttatcttta aggctgaaac
    10441 tgataagaaa cttatccatg gctttaacag tttcattttt tgatgaaagc acttgataac
    10501 tatctttatc aatctgagtt gcgcaacgaa aaaactccca caaagttaac aggctatcat
    10561 aattcgaaac ccaatctttt ttcttaaatg catgctgaat attattaaaa aaattgtttg
    10621 aatgtgtttt tgtatgcgat gattttacga ataactccac cgcaccaata aaattattgt
    10681 gtctgatcct gggtaacata tggctacctt attttatttg gttattttat gtcgccatta
    10741 aatatctcat tatagaagta aactatcaaa aaacgctcat tattaaaatg taacttatta
    10801 gcaattgaat ttttgcactt taaatacaat ctctttttat ttataacttt ttaggttggg
    10861 agaaatcagg atggcagaat caggaaatac actgtttctg ccatctgaat ttagtaaata
    10921 gacactctga acccaggatt caggaacgac tcgcgcggag tgtaatccag cggtttaccc
    10981 tgccagtcgt gaacgtgcgc tccggcagct gcggccacag catgtccagc ggcggtgtcc
    11041 caaatattcg ttggtccgaa gcgcgggtac agctgcgcct gtccttccgc caccaggcag
    11101 aatttcagcg aagagccgat ggacgtggtc tgatgttcgc caagctgttg cagatactct
    11161 ttcagctccg catctgcatg ggaacggctg ataaccacca gcggcgggcg cgcatcgcgg
    11221 acctgaatct gcttgcgcac accgcactct tctttccagg ccttgccttc tgccgcgctg
    11281 tacattacgt tcattaccgg cgcatacacc acacctaaaa tcggtttgcc atggtcaatg
    11341 agcgcaatgt taacggtgaa ttcgccattg cgtttaataa actctttagt accatccagc
    11401 gggtctacca gccagtaacg ctgccagtgc tgacggactt cccaaccggg aggatcttct
    11461 tcagaaagga ccggaatatc cggtgtcagc gtacgtaaac cgtccatgat aacggtgtgt
    11521 gcggcaatat ccgctgccgt taccggagaa ttgtccgctt tgctgacgac gtccatcggt
    11581 ttcgtcccgt cgtagacctg cataatggca tcgcctgcat tccgtgcaag ctggcatact
    11641 tgatctaaca tttctccacc tcgtctctgt gagcggtgtt aacttattgt tttacttata
    11701 ccctatcgtt aatgaatgcg ccaactgtga tagtgtcatc attttcaaag cgtaaaattg
    11761 tggcattctt cactgttcta taagtaagac gtttattctc ccttttcttt cgtattcccg
    11821 atgataaaag gatgtccctg atgattaagt ttagcgcaac gctcctggcc acgctgattg
    11881 ccgccagtgt gaatgcagcg acggtcgatc tgcgtatcat ggaaaccact gatctgcata
    11941 gcaacatgat ggatttcgat tattacaaag acaccgccac ggaaaaattc ggactggtac
    12001 gtacggcaag cctgattaac gatgcccgca atgaagtgaa aaacagcgta ctggtcgata
    12061 acggcgattt gattcagggg agtccgctgg ccgattacat gtcggcgaaa ggattaaaag
    12121 caggtgatgt tcatccggtt tataaggcgc tgaatacgct ggattatacg gtcggtacac
    12181 tcggcaatca tgaatttaac tacggtctgg attacctgaa aaatgcgctg gcgggagcga
    12241 aattccctta tgtaaatgcc aacgtcattg acgccagaac caaacagcca atgtttacac
    12301 cgtatttaat taaagatacc gaagtggtcg ataaagacgg aaaaaaacag acgctgaaga
    12361 ttggctatat tggcgtcgtg ccgccgcaaa tcatgggctg ggataaagct aatttatccg
    12421 gaaaagtgac ggtgaatgat attaccgaaa ccgtgcgcaa atacgtgcct gaaatgcgcg
    12481 agaaaggtgc cgatgtcgtt gtcgttctgg cgcattccgg gctgtctgcc gatccgtata
    12541 aagtaatggc ggaaaactca gtttattacc tcagtgaaat tccgggcgtt aacgccatta
    12601 tgtttggcca tgctcacgcc gttttcccgg gtaaagattt tgctgatatc gaagaggctg
    12661 atatcaccaa aggcacgctg aatggtgttc cggcggtaat gccgggcatg tggggcgatc
    12721 atcttggggt ggtcgactta caactcagta atgacagcgg taaatggcag gtgacgcagg
    12781 cgaaagcgga agcacggccg atttacgaca tcgccaataa aaaatccctc gcggcggaag
    12841 acagcaagct ggtagaaaca ctcaaagccg atcacgatgc cacacgccag ttcgtcagca
    12901 agccaatcgg taaatctgcc gacaatatgt atagctatct ggcgctggtg caggacgatc
    12961 cgaccgtgca agtcgtgaac aacgcgcaaa aagcgtatgt cgaacattac attcagggcg
    13021 atccggatct ggcaaaactg ccggtgcttt cagctgccgc accgtttaaa gttggtggtc
    13081 gcaaaaatga cccggcaagc tatgtggagg tggaaaaagg ccagttgacc ttccgtaatg
    13141 ccgccgatct ttatctctac cccaatacgc tgattgtagt gaaagccagc ggtaaagagg
    13201 tgaaagagtg gctggagtgc tccgccggac agtttaacca gattgatcct aacagcacga
    13261 aaccacagtc actcatcaac tgggatggtt tccgcactta taactttgat gttattgatg
    13321 gtgtgaatta tcagattgat gttacccaac ccgcccgcta tgacggcgag tgccagatga
    13381 ttaatgccaa tgcagagcgg attaagaacc tgacctttaa tggcaagccg attgatccga
    13441 acgctatgtt cctcgttgcc accaataact atcgcgctta cggcggcaaa tttgccggta
    13501 cgggcgacag acatatcgct tttgcttcac cggatgagaa ccgctcggtg ctgacagcgt
    13561 ggattgctga tgagtcgaaa cgtgcgggag aaattcaccc ggcggcagat aacaactggc
    13621 gtttagcacc gatagctggc gataagaaac tggatatccg tttcgaaact tccccgtcag
    13681 ataaagccgc agcgtttatt aaagagaaag ggcaatatcc gatgaataaa gtcgcgaccg
    13741 atgatatcgg gtttgcgatt tatcaggtgg atttgagtaa gtaaaacact tctttttcgg
    13801 tctataaatt atcaaccgca tccggcattt attggcggat gcgatgctgg cgcatcttat
    13861 ccgccctacc agccatgcac cgtagaccag ataagctcag cgcatccggc agttatgccg
    13921 catgttcatc ccgcaccgcc aacacctcgg gcaaattcaa ctcaatccag tccgccagtg
    13981 cagcaacctt ttcgctcacc tgctcgccca gcggcgtgag gctatattcc acatgcggtg
    14041 gcaccaccgg atacgcgata cggttaagaa aaccatcctg ttctaacgcc tgtaacgact
    14101 gcgcaagcat cttttcgctc cccccgccga ttttgcgccg caggtcgcta aagcgatgag
    14161 taccttcgcg tagcgccacc agaatcaaca ccccccaacg gctggtgacg tgtttcaaca
    14221 cctcgcgcga cgggcactgt tccgcaaaga gattaccctc tttcagttgt tgcgacaggc
    14281 taacctgact catttcatac ttaccttttt gtacgtactt actaaaagta agtttaggtg
    14341 ttagcgtatt taaacacaag acaaaacgat ggagacttcc catgatcgct attactggtg
    14401 ccactggcca acttggtcac tatattattg aatccttgat gaaaacggtt cctgccagcc
    14461 aaatagtggc tatcgttcgt aatccggcaa aagcccaggc tctggcagca caaggcatta
    14521 ccgtgcgtca ggctgactac ggcgatgaag ccgcactgac atctgcactt cagggagtgg
    14581 aaaaactact gctgatctct tccagcgaag tgggtcaacg tgccccgcag catcgtaatg
    14641 ttattaatgc cgcaaaggcg gctggcgtga aatttatcgc ttataccagc ctgctacatg
    14701 cagatacctc cccgctcggc ctcgccgatg agcacattga gacggagaaa atgttggctg
    14761 attctggcat cgtttacacc ctgctgcgca acggctggta cagcgaaaac tacctcgcca
    14821 gcgccccggc agcactggaa cacggcgtat ttatcggtgc ggcgggcgat ggcaaaatcg
    14881 cctcagcaac gcgggcagat tatgcggcag ctgcggcacg cgtgattagc gaagccggtc
    14941 acgaaggcaa ggtttacgaa ctggcgggcg atagtgcctg gacgttgaca cagttagcgg
    15001 cagagctgac caaacagagc ggcaaacagg ttacctatca aaatctgagc gaagccgatt
    15061 tcgccgcggc actgaaaagc gtcggactgc ccgacggact ggcggatatg ctggcggatt
    15121 ctgacgttgg cgcatcgaaa ggtggtctgt ttgataacag caaaacgctt agcaaattga
    15181 ttggccgccc aacgacaacg ttagccgaaa gcgtaagcca tctttttaat gttaataact
    15241 agttaattaa agtggcatcc tcccgcatcc tctctaataa tgacgggatg ccgggagcaa
    15301 tcatgtctgc ttcctgaact ttcttctgac agaccaatgg atgccagtaa tgattagcgg
    15361 cgtgctgtac gccctgttag cagggttgat gtgggggctt atttttgtcg ggccgttgat
    15421 cgtaccggaa tacccggcga tgttgcagtc gatggggcgt tatctggcgt tagggttaat
    15481 tgcgctgccc attgcctggc tgggacgcgt gcgtctgcgt cagttggcgc gtcgcgactg
    15541 gcttaccgcc ttgatgctca ctatgatggg caacctcatc tattacttct gccttgccag
    15601 tgccattcaa cgtactggtg cgcctgtttc cacgatgatt atcggcaccc tgccggtggt
    15661 gattcccgtt tttgccaatc tgctttatag ccagcgcgac ggcaaactcg cgtggggaaa
    15721 actcgccccg gcactggttt gtattggcat cggcctggcg tgtgtgaata ttgctgagtt
    15781 aaaccacgga ctccccgatt ttgactgggc acgttatacc tcaggcatcg tgctagcgtt
    15841 agtttccgtg gtctgctggg catggtatgc cctgcgcaac gcccgctggc tgcgggagaa
    15901 tcccgacaaa catccgatga tgtgggcgac ggcgcaggcg ctggtcacac tgccggtttc
    15961 tctcatcggc tatctcgtcg cctgttactg gctgaatacg caaacgccgg acttctccct
    16021 accttttggc ccccgtccgc tggtgtttat tagtctgatg gttgcgatag ccgtgctttg
    16081 ctcatgggtt ggcgcactct gctggaacgt cgccagccag cgattaccga cagtgattct
    16141 cgggccgctg atcgttttcg aaacactggc aggtttgctg tacacctttt tgatacgcca
    16201 gcaaatgccg ccgctgatga cgctgagcgg tatcgcgctg ttagtggttg gcgtggtcat
    16261 tgtagtcaga gcaaaaccgg aaaagccttt aactgaatct gtctcagaaa gttgacatac
    16321 tggctgtgag ttaaataagc ctctgctacg taagggttat agcttttgcc ttaaagatgt
    16381 atttaaaata catcttatct tattaagaat gaggtatcag ctatggctta tcgcgaccaa
    16441 cctttaggtg aactggcgct ctctattcct cgcgcttcag ctctgtttcg taaatataat
    16501 atggattact gctgtggcgg taagcagacg ctggcgcgcg cggcggcacg taaagaactg
    16561 gatgttgagg tcattgaagc tgaactggca aagcttgctg aacaaccgat tgagaaagac
    16621 tggcgtagcg ccccgctggc agaaatcatt gaccatatca tcgtgcgcta ccacgatcgt
    16681 caccgcgagc aactgccgga gctgatcctg caagcgacta aagtcgagcg cgttcacgcc
    16741 gacaaaccga gcgtgccaaa agggctgaca aaatacctga ccatgctgca tgaagagctt
    16801 tccagccaca tgatgaaaga agagcagatc ctcttcccga tgatcaaaca aggcatgggc
    16861 agccaggcaa tggggccaat cagcgtaatg gaaagcgagc acgatgaagc gggcgaactg
    16921 ctggaagtga tcaaacacac taccaataac gtcacaccgc cgccagaagc ctgcaccacc
    16981 tggaaagcga tgtataacgg cattaatgaa ctgattgatg acctgatgga tcacatcagt
    17041 ctggaaaaca atgtactgtt cccacgcgcg ctggcgggtg agtgatctaa aagctggatg
    17101 gcattgcgcc atccagcatg ataatgcggt tatttccgca gttcagcagc ccgcttctta
    17161 ccaataaaca accagcccag ccccagtgcg ataaaccaca gcggggtaac cagcagcgcc
    17221 tggcgagtgt catcttccag tgtcagcaac acgaccacga acacaaagaa cgccatacat
    17281 acccagcaca tcagcttgcc gagcggcatc ttgtagatcg acttctcatg cagatgagga
    17341 cgctgtttgc ggtacaccag gtacgagcaa aggataatcg tccagacgaa cataaacaga
    17401 atcgcggaaa cggttgtaat catcgtgaac gcaccaatca cgctaggatt cacatacagc
    17461 atcaccacgc caccgagcag gcagatgcag gagaaggtca gccctttcgc tggtactgcg
    17521 cgcttagaaa gtttagcgaa cgctttcggt gccacacctt cctgcgccag accaaacagc
    17581 atacggctgg tagagaagac gccgctgtta gcggaagacg ccgcagaggt cagcaccaca
    17641 aagttgatca cgctggcagc cgcaggcaaa cctaccaaca caaacagctc aacgaacggg
    17701 cttttctccg ggactaccga actccacggt gtcacggaca taatcacaat cagcgcgaag
    17761 acgtagaaca taatgatacg gatcggaatg gagttaatcg cgcgtggcag tgatttctcc
    17821 ggatctttgg tttccgcagc tgttgtacct accagctcaa tccccacgaa agcgaaaacc
    17881 gctatctgga atccggcaaa gaagccactt aaacctttcg ggaaccagcc gccgtcattc
    17941 cacaaatgcg cgaatgacgc ttccacacca gtcggtgact gaaagtgcat cgccaccatg
    18001 accaggccga cgacaatcag cgacacgatg gcgacgattt tgatcatcgc aaaccagaac
    18061 tccatctcac cgaacatttt cacggtggca aggttgagcg tcagcagcag cactatcacc
    18121 gccagcgagg cgacccagtc ggagagatcg gggaaccaga actgagcata agccgtgatc
    18181 gccaccacgt ctgccatacc ggttacaacc cagcagaacc agtaagtcca gccagtgaaa
    18241 tatcctgtcc acggcccgag taaatcggaa gcgaagtcac taaaagattt gtattccaga
    18301 ttcgaaagca gcaattcccc cattgcccgc atcacgaaaa agagcataaa accaatgatc
    18361 atataaacga aaatgatcga cggcccggca aggctaatcg ttttgccaga ccccagaaac
    18421 aaccccgtac caatggcacc gccaatggca ataagctgaa tatgtcggtt tgtgagattg
    18481 cgccgtagcg actgttcagc cggagcctga tcatcggcaa cgacttttac ctgatctacc
    18541 atgttttttt cttcctgtac ctgtctgtgt tgttcaggct ctacggcctt tagtcagtct
    18601 atgatacgac gaatctgtat cgggactcat cgatattagg taacaatacg cgggatgaat
    18661 actaagattt agatctaatg ttaattttat gtttaaagtg agtgtcatat cacggtgata
    18721 acgcgaaaca tctcacaaaa atacacgctt acggggtctt tgcaacacaa aatagcgccg
    18781 tttggcaaac tgaagggttt attgctgaat gcctgctccc ctctggttcg aggggaacag
    18841 aatgcgctgc ttagaggatt tccagcagtt cgacttcaaa caccagggtg ctgaacggag
    18901 ggatggatgc acctgcgccg cgctcgccat atgccagttc ctgcgggata gtcagttccc
    18961 atttagaacc taccggcatc agagtcagtg cttcaatcca gccagggatc acgccgttaa
    19021 ccgggaattc agcgggttca ccacgagcaa cggagctgtc aaacacggtg ccgtcgatca
    19081 gtttaccggt gtaatgaaca cgaacgcggt cggtacgtgc cggaattgcg ccttcaccct
    19141 ggttgatcac gcggaattgc aggccagatt cggtgctatt cacaccttct tttttggcgt
    19201 tttcttccag gtatttcaca ccttcagcag ccatcgcctg gaaacgctga cgacgaacgg
    19261 catcggcgcg ttcgtggatt tcacgcagcg cgcgatgcac cacatcaacc ggaacagccg
    19321 gatgtttgcc ttccagcgca tcggcaatac ctgcaaccag tgcttctggc agcagccctt
    19381 ccaggccaga ttcactcagt tgttgcccta cctgcaaacc aatgccgtag cttgcttgcg
    19441 cttcgatggt gtcaaaagtt ggggtggtca tcgtatttcc tttcttaggg tataaaagta
    19501 gcgggcagca tatcagccac acttctttgg gtaaaacttt gtcacaggaa tgatgacaaa
    19561 tcccggggaa aaagaaacaa tagcaatatc ccg
//
LOCUS       DADMJB010000070        19401 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.070, whole genome shotgun sequence.
ACCESSION   DADMJB010000070 DADMJB010000000
VERSION     DADMJB010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19401
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.070"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(31..1860)
                     /gene="glmS"
                     /locus_tag="JN078_002179"
     CDS             complement(31..1860)
                     /gene="glmS"
                     /locus_tag="JN078_002179"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HAY9041378.1"
                     /translation="MCGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMT
                     RLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEANAHPHVSEHIMVVHNGII
                     ENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTV
                     IMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRR
                     SVNIFDKTGAEVKRQDIESNLQYDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQ
                     VDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYR
                     KSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMT
                     NAGTEIGVASTKAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLS
                     QDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPL
                     ALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMP
                     HVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE"
     gene            complement(2022..3392)
                     /gene="glmU"
                     /locus_tag="JN078_002180"
     CDS             complement(2022..3392)
                     /gene="glmU"
                     /locus_tag="JN078_002180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HAY9041379.1"
                     /translation="MLNNAMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAAN
                     ELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILML
                     YGDVPLISVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATD
                     EQRQIQEINTGILISNGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQ
                     RLSEVEGVNNRLQLSRLERVYQSEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDT
                     NVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDVNLAAACTIGPFARLRP
                     GAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANK
                     FKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQKEGWR
                     RPVKKK"
     gene            complement(3743..4162)
                     /gene="atpC"
                     /locus_tag="JN078_002181"
     CDS             complement(3743..4162)
                     /gene="atpC"
                     /locus_tag="JN078_002181"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001251972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HAY9041380.1"
                     /translation="MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLT
                     AIKPGMIRIVKQHGHEEFIYLSGGILEVQSGNVTVLADTAIRGQDLDEARAMEAKRKA
                     EEHISSSHGDVDYAQASAELAKAIAQLRVIELTKKAM"
     gene            complement(4183..5565)
                     /gene="atpD"
                     /locus_tag="JN078_002182"
     CDS             complement(4183..5565)
                     /gene="atpD"
                     /locus_tag="JN078_002182"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017800291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HAY9041381.1"
                     /translation="MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQ
                     QQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEI
                     GEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNM
                     MELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRL
                     RVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM
                     GVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPA
                     VDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVA
                     RARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVGSI
                     EEAVEKAKKL"
     gene            complement(5592..6455)
                     /gene="atpG"
                     /locus_tag="JN078_002183"
     CDS             complement(5592..6455)
                     /gene="atpG"
                     /locus_tag="JN078_002183"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HAY9041382.1"
                     /translation="MAGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRP
                     YAETMRKVIGHLAHGNLEYKHLYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAE
                     MKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAY
                     DEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYLYEPDPKALLDT
                     LLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQE
                     LTEIVSGAAAV"
     gene            complement(6506..8047)
                     /gene="atpA"
                     /locus_tag="JN078_002184"
     CDS             complement(6506..8047)
                     /gene="atpA"
                     /locus_tag="JN078_002184"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001176751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HAY9041383.1"
                     /translation="MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGL
                     ADCMQGEMISLPGNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRG
                     LLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIG
                     RGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGAL
                     ANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLL
                     LRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAAQTKIMKKLSGG
                     IRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFA
                     AERGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGKLKGILDSFK
                     ATQSW"
     gene            complement(8060..8593)
                     /gene="atpH"
                     /locus_tag="JN078_002185"
     CDS             complement(8060..8593)
                     /gene="atpH"
                     /locus_tag="JN078_002185"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HAY9041384.1"
                     /translation="MSEFITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQM
                     AELLSGALAPETLAESFIAVCGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAV
                     SEATAEVDVISAAALSEQQLAKISAAMEKRLSRKVKLNCKIDKSVMAGVIIRAGDMVI
                     DGSVRGRLERLADVLQS"
     gene            complement(8608..9078)
                     /gene="atpF"
                     /locus_tag="JN078_002186"
     CDS             complement(8608..9078)
                     /gene="atpF"
                     /locus_tag="JN078_002186"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001052215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HAY9041385.1"
                     /translation="MNLNATILGQAIAFVLFVLFCMKYVWPPLMAAIEKRQKEIADGL
                     ASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIV
                     AQAQAEIEAERKRAREELRKQVAILAVAGAEKIIERSVDEAANSDIVDKLVAEL"
     gene            complement(9140..9379)
                     /gene="atpE"
                     /locus_tag="JN078_002187"
     CDS             complement(9140..9379)
                     /gene="atpE"
                     /locus_tag="JN078_002187"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004246596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HAY9041386.1"
                     /translation="MENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPD
                     LIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAVA"
     gene            complement(9426..10241)
                     /gene="atpB"
                     /locus_tag="JN078_002188"
     CDS             complement(9426..10241)
                     /gene="atpB"
                     /locus_tag="JN078_002188"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HAY9041387.1"
                     /translation="MASENMTPQDYIGHHLNNLQLDLRTFSLVDPQNPPATFWTINID
                     SMFFSVVLGLLFLVLFRSVAKKATSGVPGKFQTAIELVIGFVNGSVKDMYHGKSKLIA
                     PLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFIL
                     ILFYSIKMKGIGGFTKELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAG
                     ELIFILIAGLLPWWSQWILNVPWAIFHILIITLQAFIFMVLTIVYLSMASEEH"
     gene            complement(10250..10630)
                     /gene="atpI"
                     /locus_tag="JN078_002189"
     CDS             complement(10250..10630)
                     /gene="atpI"
                     /locus_tag="JN078_002189"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418195.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit I"
                     /protein_id="HAY9041388.1"
                     /translation="MSVSLVSRNVARKLLLVQLLVVIASGLLFSLKDPFWGVSAISGG
                     LAVFLPNVLFMIFAWRHQAHTPAKGRVAWTFAFGEAFKVLAMLVLLVVALAVLKAVFL
                     PLIVTWVLVLVVQILAPAVINNKG"
     gene            complement(11247..11870)
                     /gene="rsmG"
                     /locus_tag="JN078_002190"
     CDS             complement(11247..11870)
                     /gene="rsmG"
                     /locus_tag="JN078_002190"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HAY9041389.1"
                     /translation="MLNKLSLLLKDAGISLTDHQKNQLIAYVNMLHKWNKAYNLTSVR
                     DPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV
                     RFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFASLNDMVSWCHHLPGEQGR
                     FYALKGQMPEDEIALLPEEYQVESVVKLQVPALDGERHLVVIKANKI"
     gene            complement(11934..13823)
                     /gene="mnmG"
                     /locus_tag="JN078_002191"
     CDS             complement(11934..13823)
                     /gene="mnmG"
                     /locus_tag="JN078_002191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000499793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HAY9041390.1"
                     /translation="MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQ
                     MSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRV
                     LYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD
                     GKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQ
                     HGDNPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRY
                     CPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENA
                     KIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAA
                     RLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTE
                     IGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREAS
                     GEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNE
                     NTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQGM
                     LRRSA"
     gene            complement(14202..14645)
                     /gene="mioC"
                     /locus_tag="JN078_002192"
     CDS             complement(14202..14645)
                     /gene="mioC"
                     /locus_tag="JN078_002192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein MioC"
                     /protein_id="HAY9041391.1"
                     /translation="MADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGPLLEDL
                     SASGIWLIISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFGAIGIGSREYDTFCGAI
                     DKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWINLLK"
     gene            complement(14735..15193)
                     /gene="asnC"
                     /locus_tag="JN078_002193"
     CDS             complement(14735..15193)
                     /gene="asnC"
                     /locus_tag="JN078_002193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator AsnC"
                     /protein_id="HAY9041392.1"
                     /translation="MENYLIDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVE
                     KMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYYTT
                     GHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLIVLQHPIMRTIKP"
     gene            15345..16337
                     /gene="asnA"
                     /locus_tag="JN078_002194"
     CDS             15345..16337
                     /gene="asnA"
                     /locus_tag="JN078_002194"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HAY9041393.1"
                     /translation="MKTAYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGT
                     QDNLSGCEKAVQVKVKALPDAQFEVIHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPD
                     EDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLAPF
                     LPDQIHFVHSQELLSRYLDLDAKGRERAIAKDLGAVFLVGIGGKLSDGHRHDVRAPDY
                     DDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIRVDADTLKHQLALTGDEDRLQL
                     EWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQCGVWPAAVRESVPSLL"
     gene            complement(16342..17793)
                     /gene="viaA"
                     /locus_tag="JN078_002195"
     CDS             complement(16342..17793)
                     /gene="viaA"
                     /locus_tag="JN078_002195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase RavA stimulator ViaA"
                     /protein_id="HAY9041394.1"
                     /translation="MLTLDTLNVMLAVSEEGLIEEMIIALLASPQLAVFFEKFPRLKA
                     AITDDVPRWSEALRSRLKDARVPPELTEEVMCYQQSQLLSTPQFIVQLPQILDLLHRL
                     NSPWAEQARQLVDANSTITSALHTLFLQRWRLSLIVQATTLNQQLLEEEREQLLSEVQ
                     ERMTLSGQLEPILADNNTAAGRLWDMSAGQLKRGDYQLIVKYGEFLNEQPELKRLAEQ
                     LGRSREAKSIPRNDAQMETFRTMVREPATVPEQVDGLQQSDDILRLLPPELATLGITE
                     LEYEFYRRLVEKQLLTYRLHGESWREKVIERPVVHKDYDEQPRGPFIVCVDTSGSMGG
                     FNEQCAKAFCLALMRIALAENRRCYIMLFSTEIVRYELSGPQGIEQAIRFLSQQFRGG
                     TDLASCFRAIMERLQSREWFDADAVVISDFIAQRLPDDVTSKVKELQRVHQHRFHAVA
                     MSAHGKPGIMRIFDHIWRFDTGMRSRLLRRWRR"
     gene            complement(17787..19283)
                     /gene="ravA"
                     /locus_tag="JN078_002196"
     CDS             complement(17787..19283)
                     /gene="ravA"
                     /locus_tag="JN078_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418202.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase RavA"
                     /protein_id="HAY9041395.1"
                     /translation="MAHPHLLAERISRLSSSLEKGLYERSHAIRLCLLAALSGESVFL
                     LGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTS
                     GYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEA
                     DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKE
                     IGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVD
                     LILLKDCLWYDAQSLNLIQQQIDVLMTGHAWQQQGMLTRLGAIVQRHLQLQQQQSDKT
                     ALTVIRLGGIFSRRQQYQLPVNVTASTLTLLLQKPLKLHDMEVVHISFERSALEQWLS
                     KGGEIRGKLNGIGFAQKLNLEVDSTQHLVVRDVSLQGSTLALPGSSAEGLPGEIKQQL
                     EELESDWRKQHALFSEQQKCLFIPGDWLGRIEASLQDVGAQIRQAQQC"
BASE COUNT         4638 a         5124 c         4861 g         4778 t
ORIGIN      
        1 tcggcagccc ttttttatct atgatagtga ttactcaacc gtaaccgatt ttgccaagtt
       61 acgcggctgg tcaacgtcgg tgcctttgat cagcgcgaca tggtaagcca gcagctgcag
      121 cggaacggtg tagaagatcg gtgcaatcac ctcttccaca tgcggcatct cgatgatgtg
      181 catgttatcg ctacttacaa aacccgcatc ctgatcggcg aagacataca actgaccgcc
      241 acgcgcgcga acttcttcaa tgttggattt cagtttttcc aacagttcgt tgttcggtgc
      301 aacgacgata accggcatat ccgcgtcaat cagcgccagc gggccgtgtt tcagctcgcc
      361 agcagcgtag gcttcagcgt gaatgtagga gatctctttc agcttcaatg cgccttccag
      421 tgcgattggg tactgatcgc cacggcccag gaacagtgcg tgatgtttgt cagagaaatc
      481 ttctgccaga gcttcaatgc gtttgtcctg agatagcatc tgctcaatac ggctcggcag
      541 cgcctgcaga ccatgcacaa tgtcatgttc aatggaggca tccagacctt tcaggcgaga
      601 cagcttcgcc accagcatca acagcacagt taactgagtg gtgaatgctt tagtggacgc
      661 cacgccgatt tccgtacccg cgttggtcat cagcgccaga tcggattcgc gcaccagaga
      721 agaacccgga acgttacaga ttgccagcga accaaggtaa cccagctctt tcgacagacg
      781 caggcccgcc agggtatccg cggtttcgcc agactgtgac aaggtgatca tcaggctgtt
      841 acgacgcacg gcagatttac gatagcggaa ttcagaggcg atttcgacgt cgcacggaat
      901 acctgccagc gattcaaacc agtagcggga aaccataccg gagttataag aagtaccaca
      961 ggcgaggatc tgaatatgct caaccttcga cagcagttcg tcggcgttcg gtcccagctc
     1021 gcttaaatca acctgaccgt ggctgatgcg cccagtaagg gtgtttttga tcgcgttcgg
     1081 ctgttcgtag atctctttct gcatgtagtg acggtaaata cctttatcgc ccgcgtcata
     1141 ttgcagattg gattcgatat cctgacgttt tacttccgcg ccagttttat cgaagatgtt
     1201 taccgaacgg cgagtaattt ccgcaatatc gccctcttca aggaagataa agcgacgggt
     1261 caccggcagc agcgccagct ggtcagaagc gataaagttt tcgcccatac ccaggccaat
     1321 caccagcgga ctaccagaac gtgccgccag cagggtatcc gggtgacggg agtccatgat
     1381 cactgtaccg tacgcaccgc gcagctgcgg gatagcacgc agaacagcct cacgcagagt
     1441 cccgccttgt tttagctccc agttcaccag atgggcaatc acttcggtgt cggtttcaga
     1501 aacgaaggta tagccacgcg cttttaactc ttcacgcagc ggttcatggt tttcgatgat
     1561 gccgttatgc accaccataa tgtgttcaga aacatgcgga tgcgcgttag cttctgaagg
     1621 ttcaccgtgg gtcgcccagc gagtgtgagc aataccggtg ccgccatgca gaggatgttc
     1681 ttccgctgcc tgagccagca tctggacttt accgaggcga cgcaggcggg tcatatgacc
     1741 ttccgcatca acaacggcca gaccagcaga gtcatatccg cggtattcca gacgacgtaa
     1801 accttcaaga aggatttctg ctacatcacg ttgcgcgatc gcgccaacaa ttccacacat
     1861 agtttttgat tccgatttat atcgttgtcg gtcaacctgt atgcccgttt tttcgggcgc
     1921 cccgagcctt gtagagagtg gggttatttt tatagttact gcttgtggga gggagattat
     1981 gttatctcct catcccagat gaccggatta cccggccaga attacttttt ctttaccgga
     2041 cgacgccagc cttctttctg agtctgcggc acacggctga tagctaatgc attttcgccg
     2101 acattacgcg tcacagttgt acccgcagca atggtcgcgc ctttgcctac tgttaccggg
     2161 gccaccagct gagtgtcgga accgacaaac acatcgtcgc cgataatggt cttaaattta
     2221 ttcgcaccat cgtagttgca ggtaatggtt cccgcgccga tgttaacgtt atcgccaatt
     2281 tccgcatcgc ccaggtaagt cagatgacca gctttcgagc ctttacccag acgcgctttt
     2341 ttcatctcaa caaagttacc gacgtgtgca ccttccagca actcagcacc aggacgcaga
     2401 cgggcaaacg ggccaatagt acaggccgct gccagattca cgtcttccac aacggtatac
     2461 ggactgattt cgcaatcatc gccaatcacg ctgtttttaa tcacgcaacc ggtgccgatt
     2521 ttcacgcgat gaccgagagt cacgttgccc tcgatgataa cgttagtatc aatttcaaca
     2581 tcgcgcccgt gagtaagcgt accgcgcaga tcaaaacgcg ccggatcgcg cagcataacg
     2641 cctgctaaca gcagtttttc agcctgttcg gactggtaaa cgcgctccag acgggagagt
     2701 tgcaggcggt tattcacacc ttctacttcg cttaaacgtt gcggatgaac ggcgacgatt
     2761 tcacgccctt cctgatacgc cagcgcaata atgtcggtga tgtagtattc gccctgagca
     2821 ttattgttgg tcagcttcgc cagccagcgt ttcatatctg cgccgttaga gatcagaatg
     2881 ccggtgttga tctcctgaat ctgacgctgc tcgtcggtgg catctttgtg ctcaacaatg
     2941 ccggtaactt tgccattttc acgggtgata cgtccataac cggtcggatc atccagtttc
     3001 accgtcagca gaccaatgcc accctgcggt ttagcatcac gcaggcgctg gagtgtttcg
     3061 acagagatca gcggcacgtc gccgtagagc attaaaatgt cttcatcatc ggcaaagaaa
     3121 ggtgcggcct gctgcattgc atgacccgta cccagctgct ctgcctgaag cacccagtta
     3181 aggttgtcgt ctttcagcgc ctgtttaagc agatcgccgc cgtgaccgta caccaggtga
     3241 acgtgcgctg cgcctaattc attcgcagca tcaatgacat gctgaaccat cgctttcccg
     3301 gcaagggtat gcagcacttt cggaagatcg gaatacatgc gcgtgccttt gcctgcggca
     3361 aggatcacta cgctcatagc attattcaac atacgcgtcc tgactgtaat ttgagaacga
     3421 atttaaaccg cttcaccttg aaaaaactac atttttttca tcgtgaaatg gacagaggat
     3481 aaattgttca ataacggatt atccccgctg acgaaagtgc cattttcgac catcgtcacg
     3541 ccttttgtct gcagaaaatt aaggcagtac cttcatttaa gcgtcaggtg gatgtttttg
     3601 ctcttatttc gatcaatgaa taaacgggaa aacaggggtg ttttatatca gcaggatcta
     3661 tgtgaacgct cttcaggacg gatcacgcgt aaaaaaaaac cagcctgttt ccagactggc
     3721 ttttgtgctt ttcaagccgg tgttacatcg cttttttggt caactcgata acgcgcagct
     3781 gcgcgatcgc tttggccagt tccgcagacg cctgagcgta atctacgtcg ccgtgagagc
     3841 tgctaatgtg ctcttcagcc ttacgtttcg cttccatggc tcgcgcttcg tcgagatcct
     3901 ggccgcgaat tgcggtgtcg gccagaacgg tcacgttgcc agactgcact tcaagaatgc
     3961 cgccagacag atagataaac tcttcgtgac cgtgctgttt cacgatgcga atcataccag
     4021 gcttaatggc ggtgagcagc ggtgcgtggc cagggtagat ccccagttca ccttcgctac
     4081 ccgttacctg gattttctcg accagaccag agaacatttg ttgctctgcg ctgacgacgt
     4141 ccaggtggta agtcattgcc atatcaccct ccgattaagg cgttaaagtt ttttggcttt
     4201 ttccacagct tcttcgatgg aaccgaccat gtagaacgcc tgctccggca ggtgatcgta
     4261 ttcgccttcc atgatgcctt taaagccacg gatggtgtct ttcagggaga cgtatttacc
     4321 cggagaaccg gtgaatactt ctgccacgaa gaacggctgg gacaggaagc gctggatctt
     4381 acgagcacgc gctaccacca gtttgtcttc ttcagacagt tcatccatac ccaggatggc
     4441 gatgatgtct ttcagttcct gataacgttg caggatggac tgaacgccac gcgcggtgtc
     4501 gtagtgttcc tgaccaacca ccagcgggtc cagctgacgg ctggtggagt ccagcgggtc
     4561 aacggccggg tagataccca gagacgcgat ctgacggctc agtaccacgg ttgcgtcaag
     4621 gtgcgcaaag gtggttgccg gagacgggtc agtcaagtca tccgcaggta cgtataccgc
     4681 ctgtacggag gtgatagaac cagttttggt ggaggtgata cgttcctgca gaacgcccat
     4741 ctcttccgcc agggtcggct gataacctac cgctgaaggc atacggccca gcagtgcgga
     4801 tacttccgta ccggccaggg tgtaacgata gatgttgtca acgaacagca gaacgtcacg
     4861 accttcgtca cggaatttct cagccatggt cagaccggtc agagcaacgc gcagacggtt
     4921 tcccggcggc tcgttcatct ggccatacac cagggatact ttgtcgataa cgttggagtc
     4981 ggtcatttcg tggtagaagt cgttaccctc acgagtacgt tcacctacgc ccgcaaacac
     5041 agagtaaccg gagtgctcga tcgcgatgtt acgaatgagc tccatcatgt ttacggtttt
     5101 acctacaccc gcaccaccga acagaccaac tttaccgccc ttagcgaacg gacacatcag
     5161 gtcgataact ttgataccgg tttccagcag ttcctgagag tttgacagct cttcgtagga
     5221 aggtgctgcg cggtgaatcg cccaacgctc ttcttcaccg atctcgcctt tcatgtcgac
     5281 cggttcaccc agtacgttca tgatacggcc cagagtcgct ttacctaccg ggacttcgat
     5341 cgggtgttcg aggtctttta catccagacc gcgacgcaga ccgtcggagg aacccattgc
     5401 gatggtacgc acgataccgc cgccgagctg ctgctgaact tccagcacca gacgctcatt
     5461 accattttgc acctcaagag catcgtacac gcgcggtacg gcatcctgag ggaattcgac
     5521 gtcaactacg gcgccgatta cctggacaat ctttccagta gccatcttaa atcctctacg
     5581 aaataacctg tttaaaccgc ggcggccccc gagacgatct cggtgagttc ctgagtaatg
     5641 ctggcctgac gagctttgtt gtataccaac tgcagctctt taatcaggct gccgccattg
     5701 tcggtcgcgg ctttcatcgc caccatacgg gcggcctgct cgctggccag gttttcaacc
     5761 acgccctgat aaacctgaga ttcgacataa cgacgcagca gggtatccag caacgccttc
     5821 ggatcgggtt cgtacaggta atcccaggat ttatgtttca gatcatcatc atctgatgcc
     5881 ggtaacggca gcagctggct gatggtcgga acctgagaca tggtgttaat aaatttgttg
     5941 ctgacaatgt aaagcttgtc cagacggcct tcgtcgtagg cctgcaacat cacttttacc
     6001 ggaccgatca gttcggacag ggaagggtta tcccccatgc cggtgacctg ggcaacaaca
     6061 ttgccgccca cggagttgaa gaacgacacg cctttcgagc cgatcattgc gaggtcgcat
     6121 tgaacgcctt tgtcggtcca ggtcttcatt tccgccagca gttttttgaa caggttaatg
     6181 ttcaaaccac cgcacaaacc acggtcggtc gacaccacca ggtagcccac gcgtttaacg
     6241 tcgcggtctt ccaggtaaag gtgcttatat tccagattac catgtgcaag gtgaccaatc
     6301 actttgcgca tggtttctgc ataaggacgg ctggccgcca tgcgatcctg cgatttacgc
     6361 attttggaag cggcgaccat ctccatcgct ttagtgatct tttgcgtgtt ctggacgctt
     6421 gcgatcttac tacgtatctc ttttgcgccg gccatgagct tctcctcaat gccttgcggc
     6481 ctgccctaag gcaagccgcc agacgttacc aggattgggt tgctttgaag gaatcgagga
     6541 tgcctttcag tttgccttcg atttcgtcgt tgtagccacc ggtctggttg atctcttgca
     6601 tcaacggagc gtgatcacgg tcgacgtaag ccagcagagc ggcttcgaag ctgccaattt
     6661 tcgacagttc aacatccgcc aggtaaccac gttctgctgc gaacagaacc agagactgct
     6721 gcgcaacgga catcggcgca tactgtttct gtttcagcag ttcggtcact ttctgaccgt
     6781 ggtcaagctg cttacgtgtt gcatcgtcaa ggtcggatgc aaactgagag aacgctgcca
     6841 gttcacgata ctgtgccaga gcggtacgga taccaccgga cagttttttc atgatcttgg
     6901 tctgtgctgc accaccaaca cgggatacgg aaatacccgg gttaaccgca ggacgaatac
     6961 cggcgttgaa caggttggtt tccaggaaga tctgaccatc ggtaatggag attacgttgg
     7021 tcggaacgaa cgcagaaacg tcacccgcct gagtttcgat aatcggcagt gcggtcagag
     7081 aaccggtttt ccctttcact tcacctttgg tgaaggcttc aacgtattcg gcgttaacac
     7141 gtgcagcacg ctccagcaga cgagagtgga ggtagaaaac gtcgcccggg aatgcttcac
     7201 gtcctggcgg acgacggagc agcagggaga tctgacggta agcaacagcc tgtttagaca
     7261 ggtcatcgta aatgatcagc gcatcttcac cgcggtcacg gaagtattcg cccattgcgc
     7321 aaccggcata cggtgccagg tattgcagtg cagcggattc agacgcggtt gctaccacaa
     7381 cgatggtgtt agccagtgcg ccgtgctctt ccagtttacg taccacgtta gaaatggtgg
     7441 acgctttctg gccgatagcg acatagatac atttgatacc ggaatcgcgc tggttgatga
     7501 tggcatcgat agccagtgcg gttttacctg tctgacggtc accgatgatc aattcacgct
     7561 gaccacgacc gattgggatc atggagtcaa cggctttata accggtctgt accggctgat
     7621 ctacggactg acgttcgata acgcccggag cgattgcttc tacagcagag aagccgtcgt
     7681 gatccagcgg acctttaccg tcgattggtg cacccagagt gttaaccaca cggcccagca
     7741 ggccacggcc aaccggaact tccaggatac ggccagtaca cttaactttc atgccttcgg
     7801 caaggtcagc gtacggaccc ataacaaccg cacctacaga gtcgcgctcg aggttcagtg
     7861 cgatagcgta acggttaccc ggcagggaga tcatttcacc ctgcatacaa tcggccaggc
     7921 cgtgaatgcg gataacaccg tcacttacag aaacaatagt accttcgttg tgagcttcac
     7981 tcacaacatt gaactgagca atgcgctgct tgatcagttc gctgatttcg gtggaattca
     8041 gttgcatgct ccagtcccct taagactgca agacgtctgc aaggcgctca agacgaccgc
     8101 gtacgctgcc atcaatgacc atatcacccg ctcggatgat aacgcctgcc attacagact
     8161 tatcgatttt gcaattcagc ttaactttgc gtgacagacg tttttccatc gcagcagaaa
     8221 ttttcgcgag ctgttgttca ctcagtgcgg cagcggaaat gacgtctacc tcagcggtag
     8281 cctcactcac ggcacgaagg tgaataaact gctccagaac atccgggagc gcgttaagac
     8341 gaccattttc agccattacc cgaatcaggt tctgaccgtt ttcgtccagt tgctcaccac
     8401 aaactgcgat aaacgactcg gcgagcgttt ctggcgcaag cgcgccagag agaagctctg
     8461 ccatttgttc gtttttggtt acctcggcgg caaacgccag catgtcctgc cagcgttcta
     8521 cactttggtg ttcgacggca aagtcaaaag ctgctttggc gtaggggcga gctaccgtaa
     8581 taaattcaga catcagcccc tccctcctta cagttcagcg acaagtttat ccacgatgtc
     8641 gctgttagca gcttcatcca cggaacgttc gatgatcttc tcggcgccag caacagccag
     8701 gatagcaact tgcttacgca gctcttcacg ggcacgttta cgctcggctt caatttctgc
     8761 ctgcgcctgg gccacgattt tagtacgttc ctgttctgcc tcagctttcg cttcgtccag
     8821 aatctgcgag cggcgtttgt tcgcctgctc gatgattacc tgggcttccg ctttcgcttt
     8881 tttcagctgg tcggtcgcgc tggcctttgc aaggtcaagg tccttatgtg ctcgttctgc
     8941 ggaagcaagg ccgtcagcaa tttctttttg acgtttttcg atggctgcca ttaatggcgg
     9001 ccatacgtac ttcatgcaga acagaacgaa caggacaaac gcgatggcct ggccgaggat
     9061 tgttgcgtta agattcacag cacaatgcct ctatttagtt aacgttctga tattgctctt
     9121 taaataaaag caacgcttac tacgcgacag cgaacatcac gtacagaccc agacctacag
     9181 cgatcatcgg gatagcatcc accagaccca taacgataaa gaactgagta cgcagcagag
     9241 gaatcagatc aggttgacgc gctgcgcctt ccaagaattt acccccgagg atgccgatac
     9301 cgatcgcagc accgattgcc gccagaccca tcatcacagc ggcagccatg tacagcagat
     9361 ccatattcag gttttccatg acagtctcca gtttgtttca gttaaaacgt agtagtgttg
     9421 gtaaattaat gttcttcaga cgccatcgac agatagacga tcgtcagaac catgaagatg
     9481 aaggcttgca gcgtaatgat caggatgtgg aaaatggccc acggcacatt caggatccac
     9541 tgtgaccacc acggcaacag accagcaatc agaatgaaaa tcagctcacc ggcatacatg
     9601 ttaccgaaca gtcgcaaacc gagtgaaact ggtttggaca gcaggcttac cccttcaagg
     9661 attaagttga caggaatgaa cgcccagtga ttgaacggct gcagcgtcaa ctctttcgtg
     9721 aagccgccga tgcctttcat tttgatgctg tagaacagaa tcaggataaa tacgcccaat
     9781 gccatagaca gcgttacgtt cacgtccgca gacggaacca cacgcagtgc aggcagaccc
     9841 agtacatgtt cagcaatgta cggcagcagg tcgataggca gtaaatccat caggttcatc
     9901 aggaataccc agacgaagat cgtcagggcc agcggagcaa tcagcttgct tttgccatgg
     9961 tacatgtctt tcacgctacc attaacaaag ccgatcacca gctcaatcgc ggtctgaaac
    10021 ttacctggca caccgctggt cgcctttttg gctacgctac ggaataaaac caggaacaac
    10081 agacccagca ccaccgagaa gaacatggag tcaatattga ttgtccagaa ggtggctggg
    10141 gggttttgtg gatccaccag cgagaatgta cgcaggtcca gctgaaggtt attcaggtgg
    10201 tgtcctatgt aatcctgcgg cgtcatattt tctgaagcca tgatgccttt taccctttgt
    10261 tgttaattac agccggtgcc agtatctgaa ccaccagcac caaaacccac gtaacgatca
    10321 gcggcaagaa taccgccttt aaaaccgcca acgccaccac cagtaacacc aacatcgcca
    10381 gaactttgaa agcttcgcca aatgcgaatg tccaggccac ccggcctttc gctggtgtat
    10441 gcgcctggtg acgccaggca aatatcataa acaaaacgtt aggcagaaag actgccaggc
    10501 ccccgcttat tgcagagacg ccccagaagg ggtctttgag gctgaacagc aatccacttg
    10561 ctatcaccac cagtaactga acgagcagaa gcttccgagc aacgtttcga ctcacgagcg
    10621 acacagacat cacgtttttt actcctgctc ccttcgaggt atgccgcgtg tcgtataaaa
    10681 ctttctttaa ggcttagagt caagcatcaa aaagcggtca aattatacgg cgcgcccccg
    10741 tgatttcaaa caataagtag ccaaaaggtg aataaatgtt taaatatttt tccagtgcat
    10801 acaattgcga cttttctact aaccctgttc gatcatgaaa aactgtaaat aacgcgtaaa
    10861 cactggtgat aaagcgtgct tcagatcaca tattgcgcat gttcgcgcac agcatattta
    10921 tttacttggc aaatgatgcc tttgcaagtt tatgatattt cagtctaaaa acagatactg
    10981 ttttaataaa tgacatttac acaacaaaaa ccacccattg acatttttaa taatgtttta
    11041 gcagccaatg atggttctta gcgccgattt ttagcagact gatattttca ctaatgactt
    11101 attttctgct taccaaaaaa agccacgtta tcttgttgat gcaaaagagt gaacgtggcg
    11161 ttaaatgtaa ccagttatat cagtagaaaa cctggttgtt gttaacagtc taaccggtca
    11221 attttttatg atttttttga taaaaattaa attttatttg ctttaatcac caccagatga
    11281 cgttcgccat ccagggctgg aacctgaagt ttaaccactg attcgacctg atattcttcg
    11341 ggcaacaaag cgatttcatc ttccggcatt tgccctttca gcgcgtagaa acggccttgc
    11401 tcaccaggaa gatggtggca ccagctcacc atatcgttca gagaggcaaa agcgcggcta
    11461 attacgccat caaatggcgg ctctgaagga aactcttcta ccctgctctg tacaggttca
    11521 atattctcca gtttaagctc atgttgcacc tgacgaagga aacgcacgcg tttaccaagg
    11581 ctatccaaca gagtgaaatg ggcttcagga cgcacgatag agagtggaat gcctggcagt
    11641 cctggtccgg tgccgacatc gataaaccgt tcaccttgca gatacggtgc caccacaatg
    11701 ctatcgagaa tatggcgtac cagcatctca ttaggatcgc ggaccgaagt caggttgtac
    11761 gctttgttcc atttatgcag catattcacg taggcaataa gctggttttt ctggtgatcg
    11821 gtaagcgaaa tacctgcgtc tttcagcagt aaggagagtt tgttgagcac ggtgattacc
    11881 tgttcttgat gcgttgcctg gtaagcgggt gcttaccagg catttttaat gcgttatgcg
    11941 ctacgacgca gcataccctg ttttttcagc cacaccagca gaatggagat agccgcaggc
    12001 gtgacgccag aaatacgcga agcttggccg atagaggctg gtttgtgatc gttaagtttg
    12061 gcgatcactt cgttagaaag accggatacc tggcggtaat ccagtgtcgc gggtagcagg
    12121 gtgttctcgt tacgcagctg cttttcgatc tcatcttgct ggcgcgcgat ataaccttcg
    12181 tatttaacct gaatctcaac ctgttccgcc gcctgttcgt ctgtcaacgc aggggcaaac
    12241 ggcgtcagcg tggttaattt ttcataagtc atttccggac gacgcagcag atcttcacca
    12301 ctggcttcac gggaaagcgg cgcagtcagg tgagcattca cttcggctgc agcttccgcc
    12361 gacggggtta cccaggtcga tttcagacgc tgacgctcac gctcgatatt ctcaagtttc
    12421 tcgttaaagc gcgcccaacg ttcgtcatcc accaggccca gttcacgacc gatttcagtc
    12481 aaacgcagat ccgcattatc ttcgcgtagc atcagacgat attctgcgcg cgaagtaaac
    12541 atacgatacg gttctttggt tcctaaagtg cacaggtcat caactagtac gccgagatac
    12601 gcctgagaac gtgccggagc ccaaccttct ttgtcagcag acagacgggc agcgttaaga
    12661 ccggccagca aaccttgcgc agcggcttct tcgtaaccgg tagtgccgtt aatctgacca
    12721 gcaaagaaca gcccctggat aaacttgctc tccagcgtcg gtttcaggtc gcgaggatcg
    12781 aagaagtcat actcaatggc ataacccgga cgcacgatct tcgcgttttc catcccctgc
    12841 atagagcgga cgatttgcat ctgcacatcg aacggcaggc tggtggagat accgttcgga
    12901 taaatttcat tagaggtcag tccttccggt tcaaggaaga tctgatgctg atttctgtcg
    12961 gcgaagcgca tgactttgtc ttcgatcgac gggcagtagc gtgggccgac accttcgatc
    13021 acccctgcat acattgggct acgatcgagg ttactgcgga tcacatcatg ggttttctcg
    13081 ttggtatgag tgatataaca cggcacctgc tggggatgct gggacgcatt gcccataaac
    13141 gagaataccg gcattgggtt atcgccatgc tgttgcgcca gcacactaaa gtcgatagtt
    13201 cgagcatcaa tacgcggtgg tgtcccggtt ttcagacgac caacgcgcag cggcagttca
    13261 cgcaaacggc gagaaagcgg aatggacggc ggatcaccag cacggccacc gctgtaatta
    13321 tccagaccga tatgaatttt accgtcgagg aacgtcccaa cggtgagcac gacggctttg
    13381 gcacggaact tcagtcccat ttgggtaaca gcaccgacca cgcgatcgtt ttcgacaata
    13441 agatcttcaa ccgcctgctg gaagatcatc aggttcggtt ggttctccag cgccgtacgt
    13501 accgcctgac ggtagagcac acgatccgcc tgagctcggg tagcgcgaac cgccggtcct
    13561 ttgcttgcgt ttagtatcct aaactggata cccgcttgat cgatcgcttt cgccatcaga
    13621 ccgccgagtg catccacttc ttttaccaga tgtcccttcc caataccgcc gatcgccggg
    13681 ttgcagctca tctgccccag agtgtcgata ttgtgtgtca aaagcagagt ctgttgaccc
    13741 atacgcgccg cggccatcgc ggcctcggtg cctgcatgac ccccgccaat gatgatgacg
    13801 tcaaaaggat ccggataaaa catggtgatt gcctcgcata acgcggtatg aaaatggatt
    13861 gaagcccggg ccgtggattc tactcaactt tgtcggcttg agaaagacct gggatcctgg
    13921 gtattaaaaa ggagatctat ttatttagag atctgttcta ttgtgatctc ttattaggat
    13981 cgcactgccc tgtggataac aaggatccgg cttttaagat caacaacctg gaaaggatca
    14041 ttaactgtga atgatcggtg atcctggacc gtataagctg ggatcagaat gaggggttat
    14101 acacaactca aaaactgaac aaccgttgtt ccttggataa ctaccggttg aaccaagctt
    14161 cctgacagag ttatccacag tagaacgcac gatctgtata cttatttgag taaattaatc
    14221 cacgatccca gccattcttc tgccggatct tccggaatgt cgtgatcaag aatgttgatc
    14281 ttcagtgttt cgcctgtctg ttttgcaccg gaatttttga gttctgcctc gagtttatcg
    14341 atagccccac aaaaggtgtc atattcacga ctaccaatac cgattgcgcc aaagcggacc
    14401 gcagaaagat cgggcttctg ttcctgcaat gcttcataga aaggagaaag gttgtccgga
    14461 atatctccgg caccgtgggt ggagctgata atcagccaga tccccgaggc agataaatct
    14521 tccaacagcg gaccgtgcag cgtttcggtg gtaaaacccg cctcttccag cttttcagcc
    14581 aggtgttctg ctacatattc ggcaccgccg agggtgctgc cgctgataag agtgatatct
    14641 gccataaacc gccaccttta ttaagagtgg cgtattgtac gctgtgaacg cgttgggatc
    14701 tacctgtgga aaagtatggg attaaaaaag ccgatcaggg cttgatagta cgcatgatcg
    14761 ggtgttgcag gacgatcaat gtctcggtgg actgaatttc atcaattgtt tggatcttgt
    14821 tgataagtac atgctggaga gcgtcgatcg aacggcacat tacttttata aagatgctgt
    14881 agtggcctgt tgtgtaatag gcttcagtga cttcatcaag gctttccagc tttgccagcg
    14941 cggaagggta gtctttggcg ctctttaata taatgccgat aaagcagcct acgtcataac
    15001 cgagctgctt cgggctgaca tcaatacgcg ccccggtaat gatccccgcc tgcttcattt
    15061 tctctacccg aacgtgaatc gtccccggac tgacgccaaa ttgtttcgcc agttcggcgt
    15121 aagcggtgcg cgcattgccc attaatgctt ccaggatgcc acggtccaga ttgtcgatca
    15181 gataattttc cataggattt tcttatgcag attgatgatt cattctattt tagccttctt
    15241 ttttaatgaa tcaaaagtgt gttaggcttt ttattgaatg attattgcat gtgtgtcggt
    15301 ttttgttgct taatcataag caacaggacg caggagtata aaaaatgaaa accgcttaca
    15361 ttgccaaaca acgccaaatt agcttcgtga aatctcactt ttctcgtcaa ctggaagaac
    15421 gtctggggct gatcgaagtc caggcaccga ttcttagccg tgtgggggat ggcacgcagg
    15481 ataacttgtc gggctgtgaa aaagcggtgc aggtaaaagt gaaagctctg cctgatgccc
    15541 agttcgaagt gattcattca ctggcgaagt ggaaacgtca gaccttaggg caacacgact
    15601 tcagcgcggg cgaagggctg tacacgcaca tgaaagccct tcgccccgat gaagaccgtc
    15661 tttctccgtt gcactcggtc tatgtagacc agtgggactg ggaacgcgta atgggcgacg
    15721 gtgagcgtca attctcgact ctgaaaagca cggtagaggc gatctgggcg ggaattaaag
    15781 caaccgaagc tgcggttagc gaagagtttg gcctggcacc gttcctgccg gatcagatcc
    15841 acttcgtaca cagccaggag ttactgtctc gttatctgga tctcgatgcc aaagggcgtg
    15901 agcgggcgat agcgaaagat cttggcgcgg tattccttgt cgggattggc ggcaagctga
    15961 gcgatggtca tcgccacgac gtgcgcgcac cggattatga tgactggagc accccgtcag
    16021 agctgggtca tgcgggtctg aacggcgata ttctggtgtg gaaccctgta ctggaagatg
    16081 cgtttgagct ttcttccatg gggatccgcg tggatgccga cacgctgaag catcagctgg
    16141 cgctgaccgg tgatgaagat cgtctgcagc tggaatggca tcaggcgctg ctgcgcggtg
    16201 aaatgccgca gaccatcggc ggcggtatcg gccagtctcg tttgactatg ctgctgctgc
    16261 aactgccgca tatcggccag gttcagtgtg gagtatggcc agctgctgtt cgcgagagcg
    16321 tcccttctct gctgtaataa tttatcgccg ccagcgtctg agcaggcggc ttcgcatccc
    16381 ggtatcaaag cgccagatat gatcgaaaat gcgcatgatg ccgggtttgc cgtgtgccga
    16441 catcgccacg gcatgaaagc gatgctgatg tacccgctgc agctctttca ctttactcgt
    16501 cacgtcgtca ggcaaccgct gagcgataaa atcagaaatc accaccgcat cggcatcaaa
    16561 ccattccctg ctttgcaagc gttccataat ggcgcgaaaa caactggcaa gatcggtgcc
    16621 gccacgaaac tgctggctta aaaaacggat tgcttgttcg atgccttgtg ggcctgaaag
    16681 ctcataacgg acgatctcgg tggaaaatag cataatatag cagcgccggt tttctgcgag
    16741 agcaatgcgc atcaaggcca ggcagaacgc tttcgcacac tgttcattaa agccgcccat
    16801 tgagccggaa gtatccacac agacaataaa cggcccgcgc ggctgttcat cgtaatcttt
    16861 atgtaccacc ggacgttcga tcactttttc acgccacgac tcaccgtgca ggcgataggt
    16921 gagcaactgt ttttccacca gccgacggta aaactcatac tccagttccg ttatccctag
    16981 tgtcgccagt tctggcggca ggagacgtaa aatatcatcg ctttgttgca gaccatcaac
    17041 ctgctcagga accgtcgccg gttcgcgcac catggtgcgg aaggtttcca tctgcgcatc
    17101 gttgcgcggt attgatttgg cttcccgaga acgccccagc tgctctgcca ggcgtttcag
    17161 ttccggctgt tcgttaagaa attcaccgta tttcacaatc aactgatagt cgccacgttt
    17221 aagctggccg gcgctcatat cccacagacg accagctgcg gtattgttat ctgcgagaat
    17281 cggttcaagt tgtccgctca gcgtcatgcg ttcctgaact tcacttaaca gttgttcgcg
    17341 ttcttcttct aatagctgtt gatttaacgt cgttgcttgc acgatcagac ttaaacgcca
    17401 gcgctggaga aaaagcgtgt gtaacgctga agttattgtg ctgttagcat caaccaactg
    17461 ccgggcttgt tctgcccatg gggaattcag acgatgcagt aagtccagga tctgtggtag
    17521 ctgcacaata aactgcggcg tggagaggag ctggctttgc tgatagcaca tcacctcttc
    17581 ggtgagttct ggcgggactc gggcatcttt cagccgactg cgcagcgcct cactccagcg
    17641 gggaacatca tcagtgattg ctgccttcag tcgtgggaat ttttcaaaga agaccgccag
    17701 ctgcggtgag gccagcagtg cgatgatcat ctcttcgatc aatccctctt cgctgacggc
    17761 cagcatcaca ttaagcgtat ccagcgttag cattgttgtg cctggcgaat ctgtgcaccg
    17821 acatcctgta ggctggcttc aatgcgacct aaccagtcgc cagggataaa cagacatttt
    17881 tgctgttcgc tgaataaagc gtgttgctta cgccagtcgc tttcaagctc ttccagttgt
    17941 tgttttattt cacctggcag accttcagcc gatgaaccgg gaagtgccag cgtactgcct
    18001 tgtaaactta catcgcgtac aacaagatgt tgggtgctat caacttccag attcagtttc
    18061 tgggcaaagc cgataccgtt cagtttgccg cgaatttcac cacctttact cagccactgt
    18121 tccagcgcgc tacgctcaaa ggagatatga accacttcca tatcatgcag ttttaacggt
    18181 ttttgcagca gcagagtcag agtggaagca gtaacgttaa cagggagttg atactgctga
    18241 cgacggctaa aaatgccgcc cagacgaatt accgttaagg ctgttttatc gctttgttgc
    18301 tgctgaagtt gcaggtgacg ttgcacaatc gcgcctaggc gggtcaacat cccttgctgt
    18361 tgccaggcgt gaccggtcat caatacatca atttgttgtt gtatcaaatt caggctttgc
    18421 gcgtcatacc acaggcaatc tttcagcaaa atgagatcta ccggggcaac agcactgcga
    18481 ccgctaaaaa aggcgctggc ctgcaataat cggatcgctt ttttccagcg acgatccgag
    18541 acataaggcg catccggtaa tttatccagt tgctggcgca gcataaaaat cagctcaaat
    18601 acatgatcgg gcagcgtaat ttcaccaatc tctttctgcc agcgttcata ttcttcatct
    18661 gtgacctgca aggcatcagg aaccggattg tcgttttcat cctgttgact ggtcagcatg
    18721 gagcggaaat tcgctttatc ctgcacttta tctaaccaca gacgaatcag catgcggtca
    18781 tataacgctt ccagactgct gtctgcttcc ggcagctcgt tggaggccgc caccagcaga
    18841 cgcatcggga ttttttctac gtgtgcaccg ttgcggaact ggcgctcgtt aatggcggtg
    18901 agcaaggtat taagaattgc cgggcccgct ttccagatct catccagaaa gacaatttct
    18961 gcttccggca ggtaaccgct ggttaaacgt tcatagcgcc cttcatcttt tagcgcctga
    19021 atagaaaggg gaccaaaaac ttcttccggc gtggagaagc gggtcatcag atattcaaac
    19081 gcgcgggcat tctgaaaggc gaattttaag cgccgggcga tcaaactttt ggcaatacct
    19141 ggcgggccaa ggaggaacac actttcacca cttaatgccg ctaataaaca caagcggatg
    19201 gcgtggctac gttcataaag ccccttttcc aacgaactgc tcaggcggga aattctttcc
    19261 gctaataaat gagggtgagc cataatgaag tggcgtcctt tcgtcaaaag ttctgcgtaa
    19321 attgcgagta tagacgtttc ttgctggtgg ctaaaatagt ctcaaagggg ggtaatgcca
    19381 gtcagttaag caactgactg g
//
LOCUS       DADMJB010000071        19310 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.071, whole genome shotgun sequence.
ACCESSION   DADMJB010000071 DADMJB010000000
VERSION     DADMJB010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19310)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19310)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19310
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.071"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..732
                     /gene="rihB"
                     /locus_tag="JN078_002197"
     CDS             <1..732
                     /gene="rihB"
                     /locus_tag="JN078_002197"
                     /EC_number="3.2.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosylpyrimidine nucleosidase"
                     /protein_id="HAY9041396.1"
                     /translation="IMRKQIVADNIHGETGLDGPVFESLTRQAESTHAVKYIIDTLMA
                     SDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGTGNFTPSAEFNIFADPE
                     AARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFEN
                     YGLAGGPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGVLGKPANTK
                     VGITIDTDWFWGLVEECVRGYIKTH"
     gene            832..2082
                     /locus_tag="JN078_002198"
     CDS             832..2082
                     /locus_tag="JN078_002198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HAY9041397.1"
                     /translation="MDVMRSVLGMVVLLTIAFLLSVNKKKISLRTVGAALVLQVVIGG
                     IMLWLPAGRWVAEKVAFGVHKVMAYSDAGSAFIFGSLVGPKMDTLFDGAGFIFGFRVL
                     PAIIFVTALVSILYYIGVMGILIRILGGIFQKALNISKIESFVAVTTIFLGQNEIPAI
                     VKPFIDHLNRNELFTAICSGMASIAGSTMIGYAALGVPVEYLLAASLMAIPGGILFAR
                     LLSPATESSQVSFNNLSFTETPPKSIIEAAATGAMTGLKIAAGVATVVMAFVAIIALI
                     NGIIGGVGGWFGFAHASLESILGYLLAPLAWVMGVDWSDANLAGSLIGQKLAINEFVA
                     YLNFSPYLQTGGTLDAKTVAIISFALCGFANFGSIGVVVGAFSAVAPHRVPEIAQLGL
                     RALAAATLSNLMSATIAGFFIGLA"
     gene            complement(2138..3226)
                     /locus_tag="JN078_002199"
     CDS             complement(2138..3226)
                     /locus_tag="JN078_002199"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HAY9041398.1"
                     /translation="MNNREKEILAILRRNPLIQQNEIADMLQISRSRVAAHIMDLMRK
                     GRIKGKGYILTEQEYCVVVGTINMDIRGIADIRYPQAASHPGTIHCSAGGVGRNIAHN
                     LALLGRDVHLLSVIGDDFYGEMLLEETRRAGVNVSGCVRLHGQSTSTYLAIANRDDQT
                     VLAINDTHLLEQLTPQLLNGSRDLLRHAGVVLADCNLTAEALEWVFTLADEIPVFVDT
                     VSEFKAGKIKHWLAHIHTLKPTLPELEILWGQAITSDADRNAAVNALHQQGVQQLFVY
                     LPDESVYCSEKDGEQFLLTAPAHTTVDSFGAGDGFMAGLVYSFLEGYSFRDSARFAVA
                     CAAISRASGSLNNPTLSADNALSLVPMV"
     gene            complement(3229..4086)
                     /gene="nfo"
                     /locus_tag="JN078_002200"
     CDS             complement(3229..4086)
                     /gene="nfo"
                     /locus_tag="JN078_002200"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HAY9041399.1"
                     /translation="MKYIGAHVSAAGGLANAAIRAAEIDATAFALFTKNQRQWRAAPL
                     TTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLG
                     LSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKFEH
                     LAAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPAECEKTFADFARIVGFKYLRGMHLN
                     DAKSTFGSRVDRHHSLGEGNIGHDAFRWIMQDDRFDGIPLILETINPDIWAEEIAWLK
                     AQQTEKAVA"
     gene            complement(4160..5209)
                     /locus_tag="JN078_002201"
     CDS             complement(4160..5209)
                     /locus_tag="JN078_002201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HAY9041400.1"
                     /translation="MTNITLQKQHRTLWHFIPGLALSAVITGVALWGGSIPAVAGAGF
                     SALTLAILLGMVLGNTIYPHIWKSCDGGVLFAKQYLLRLGIILYGFRLTFSQIADVGI
                     SGIIIDVLTLSSTFLLACFLGQKVFGLDKHTSWLIGAGSSICGAAAVLATEPVVKAEA
                     SKVTVAVATVVIFGTVAIFLYPAIYPLMSQWFSPETFGIYIGSTVHEVAQVVAAGHAI
                     SPDAENAAVISKMLRVMMLAPFLILLAARVKQLSGANSGEKSKITIPWFAILFIVVAI
                     FNSFHLLPQSVVNMLVTLDTFLLAMAMAALGLTTHVSALKKAGAKPLLMALVLFAWLI
                     VGGGAINYVIQSVIA"
     gene            5309..6190
                     /locus_tag="JN078_002202"
     CDS             5309..6190
                     /locus_tag="JN078_002202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY9041401.1"
                     /translation="MHITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQ
                     LGVQLFDRVGKRLVVNEHGRLLYPRALALLEQAVEIEQLFREDNGAIRIYASSTIGNY
                     ILPAVIARYRHDYPQLPIELSVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISEPWLE
                     DELVVFAAPTSPLARGPVTLEQLAAAPWILRERGSGTREIVDYLLLSHLPKFEMAMEL
                     GNSEAIKHAVRHGLGISCLSRRVIEDQLQAGTLSEVAVPLPRLMRTLWRIHHRQKHLS
                     NALRRFLDYCDPANIPR"
     gene            6395..7864
                     /gene="lysP"
                     /locus_tag="JN078_002203"
     CDS             6395..7864
                     /gene="lysP"
                     /locus_tag="JN078_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-specific permease"
                     /protein_id="HAY9041402.1"
                     /translation="MVSETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATIS
                     QAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNY
                     WYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFS
                     LIKVTTVIVFIIVGVLMIIGIFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIVGFSF
                     QGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDV
                     KDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPR
                     IFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAIS
                     HYRFRRGYVLQGHDINDLPYRSGFFPLGPIFAFILCLIITLGQNYEAFLKDTIDWGGV
                     AATYIGIPLFLIIWFGYKLIKGTHFVRYSEMKFPQNDKK"
     gene            8157..10137
                     /gene="cirA"
                     /locus_tag="JN078_002204"
                     /pseudo
     CDS             8157..10137
                     /gene="cirA"
                     /locus_tag="JN078_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416660.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="catecholate siderophore receptor CirA"
     gene            complement(10169..11005)
                     /gene="yeiG"
                     /locus_tag="JN078_002205"
     CDS             complement(10169..11005)
                     /gene="yeiG"
                     /locus_tag="JN078_002205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HAY9041403.1"
                     /translation="MEMLEEHRCFEGWQQRWRHDSSTLNCPMTFSIFLPPPRDHTPPP
                     VLYWLSGLTCNDENFTTKAGAQRVAAELGIVLVMPDTSPRGEKVANDDGYDLGQGAGF
                     YLNATQPPWATHYRMYDYLRDELPALVQSQFNVSDRCAISGHSMGGHGALIMALKNPG
                     KYTSVSAFAPIVNPCSVPWGIKAFSSYLGEDKNAWLEWDSCALMYASNAQDAIPTLID
                     QGDNDQFLADQLQPAVLAEAARQKAWPMTLRIQPGYDHSYYFIASFIEDHLRFHAQYL
                     LK"
     gene            11263..11931
                     /gene="folE"
                     /locus_tag="JN078_002206"
     CDS             11263..11931
                     /gene="folE"
                     /locus_tag="JN078_002206"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HAY9041404.1"
                     /translation="MPSLSKEAALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHM
                     TEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYANFPKITLIENKMKVDEMVTV
                     RDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQIL
                     IALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAV
                     RHHN"
     gene            11948..13105
                     /locus_tag="JN078_002207"
     CDS             11948..13105
                     /locus_tag="JN078_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF418 family protein"
                     /protein_id="HAY9041405.1"
                     /translation="MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNRAWYGAITP
                     QDAWTWAFLDLIGQVKFLTLFALLFGAGLQMLLPRGRRWIQSRLTLLVLLGFIHGLLF
                     WDGDILLAYGLVGLICWRLVRDAPSVKSLFNTGVMLYLVGLGVLLLLGLISDSQTSRA
                     WTPDASAILYEKYWKLHGGVEAISNRADGVGNSLLALGAQYGWQLAGMMLIGAALMCS
                     GWLKGQFSLRHYRRTGFVLVAIGVTINLPAIALQWQLDWAYRWCAFLLQMPRELSAPF
                     QAIGYASLFYGFWPQLSRFKLVLAIACVGRMALTNYLLQTLICTMLFYHLGLFMHFDR
                     LELLAFVIPVWLANILFSVIWLRYFRQGPVEWLWRQLTLRAAGTAISKTSR"
     gene            13247..14287
                     /gene="galS"
                     /locus_tag="JN078_002208"
     CDS             13247..14287
                     /gene="galS"
                     /locus_tag="JN078_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708050.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator GalS"
                     /protein_id="HAY9041406.1"
                     /translation="MITIRDVARQAGVSVATVSRVLNNSTLVSADTREAVMKAVSELD
                     YRPNANAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAE
                     KERHAIEVLIRQRCNALIVHSKALSDDELAQFMDNIPGMVLINRVVPGYAHRCVCLDN
                     LSGARMATRMLLNNGHQRIGYLSSSHGIEDDAMRKAGWMSALKEQDIIPPESWIGTGT
                     PDMPGGEAAMVELLGRNLQLTAIFAYNDNMAAGALTALKDNGIAIPLHLSIIGFDDIP
                     IARYTDPQLTTVRYPIASMAKLATELALQGAAGNIDPRASHCFMPTLVRRHSVATRQN
                     AAAITNSTNQAM"
     gene            14567..15565
                     /gene="mglB"
                     /locus_tag="JN078_002209"
     CDS             14567..15565
                     /gene="mglB"
                     /locus_tag="JN078_002209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HAY9041407.1"
                     /translation="MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVR
                     KAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK
                     ARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNK
                     DGQIQSVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAW
                     LSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGT
                     VLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK"
     gene            15626..17146
                     /gene="mglA"
                     /locus_tag="JN078_002210"
     CDS             15626..17146
                     /gene="mglA"
                     /locus_tag="JN078_002210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     ATP-binding protein MglA"
                     /protein_id="HAY9041408.1"
                     /translation="MVSSTTPSSGEYLLEMSGINKSFPGVKALDNVNLKVRPHSIHAL
                     MGENGAGKSTLLKCLFGIYQKDSGTILFQGKEIDFHSAKEALENGISMVHQELNLVLQ
                     RSVMDNMWLRRYPTKGMFVDQDKMYRETKAIFDELDIDIDPRARVGTLSVSQMQMIEI
                     AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDE
                     VTVLRDGQWIATEPLAGLTMDKIIAMMVGRSLNQRFPDKENKPGEVILEVRNLTSLRQ
                     PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKQINNHNANE
                     AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDKSRMKSDTQWVIDS
                     MRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIA
                     ELAKKGKGIIIISSEMPELLGITDRILVMSNGLVSGIVDTKTTTQNEILRLASLHL"
     gene            17162..18172
                     /gene="mglC"
                     /locus_tag="JN078_002211"
     CDS             17162..18172
                     /gene="mglC"
                     /locus_tag="JN078_002211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     permease MglC"
                     /protein_id="HAY9041409.1"
                     /translation="MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSN
                     ILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDNANKVFPEMAT
                     MPIALVILIVCAIGAVIGLINGLIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASP
                     ISGFDSGFSTFAQGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPE
                     AAKVSGVNVGLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGG
                     VSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPCWQYIIKGAIIIFAVALDSLKYAR
                     KK"
     gene            complement(18415..19310)
                     /gene="preA"
                     /locus_tag="JN078_002212"
                     /pseudo
     CDS             complement(18415..19310)
                     /gene="preA"
                     /locus_tag="JN078_002212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416652.4"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreA"
BASE COUNT         4600 a         4771 c         5120 g         4819 t
ORIGIN      
        1 attatgcgta aacaaatcgt tgccgataat attcacggtg aaaccggact ggatggtccg
       61 gtattcgagt cgctgacccg ccaggcagaa agtacccacg cggtgaaata catcattgat
      121 accctgatgg caagcgatgg cgatatcact ctggtgccgg ttggtccgct ttcaaatatc
      181 gcggtggcaa tgcgtatgca acccgcgatc ctgcccaaaa tccgtgaaat tgtgctaatg
      241 ggcggcgctt acggtacagg caacttcacg ccatctgccg agttcaacat ctttgctgat
      301 ccggaagcag cccgcgtggt gttcacctcc ggcgttccat tagtgatgat gggcctcgat
      361 ctcaccaacc agactgtttg caccccggac gtgattgcac ggatggaaag ggcaggcggc
      421 cctgccggag agctgttcag cgacatcatg aacttcactc tcaaaacgca gttcgaaaac
      481 tacggcctgg ctggcggccc ggtgcacgac gccacctgca tcggttatct gattaaccct
      541 gatggcatta aaacccagga gatgtacgtc gaagtggacg tcaacagtgg cccttgctat
      601 gggcgtaccg tctgcgacga gctgggcgtt cttggcaagc ccgctaatac caaagtcggc
      661 atcactattg ataccgactg gttctggggc ttagtcgaag agtgcgtgcg cggctacatc
      721 aaaacccatt aagtgttgat aacaagccgg gtcagtatcg caagatccaa gcccggctat
      781 ttctgatggg cagaaagccg tcgcccaata tgacatgaag agataataac tatggatgtc
      841 atgagaagtg ttctgggaat ggtggtattg ctgacgattg cgtttttgct gtcagtaaac
      901 aagaagaaga tcagcctgcg taccgttggc gcggcgttag tgttacaggt cgtgattggc
      961 gggattatgc tttggttacc ggcagggcgt tgggtcgctg aaaaagtcgc ttttggcgtg
     1021 cataaagtga tggcgtacag cgacgcgggt agcgcattta tcttcggttc gctggtcggg
     1081 ccgaaaatgg acacgctgtt tgatggcgca ggatttatct ttggtttcag ggtattaccg
     1141 gcaattatct tcgtcactgc actggtgagt attctctact acatcggtgt gatggggatt
     1201 ttaattcgca ttctcggcgg tatattccag aaagcattaa atatcagcaa gattgagtca
     1261 ttcgtcgcgg tcaccaccat tttcctcggg caaaacgaaa ttccggcgat cgtcaaaccc
     1321 tttatcgatc atctgaatcg caatgaatta tttacagcga tttgtagtgg catggcctcg
     1381 attgctggtt cgacaatgat tggttacgcc gccctgggcg tacctgtgga atatttgctg
     1441 gcggcatcgt taatggcgat cccaggcggg atcttgtttg ctcgcctgtt aagcccggct
     1501 acggaatctt cgcaggtttc ctttaataac ctctctttca ccgaaacacc gccaaaaagc
     1561 attattgaag ccgctgcgac aggggcaatg accgggctga aaatcgccgc cggtgtagcg
     1621 acagttgtta tggcatttgt cgccatcatt gcgttaatta atggtattat cggcggcgtt
     1681 ggcggctggt ttggttttgc acatgcctcg ctggagtcca ttttaggtta cctgttggcc
     1741 ccattggcgt gggtgatggg ggttgactgg agtgatgcaa atcttgccgg gagtttgatt
     1801 gggcagaagc tggcgatcaa tgaatttgtc gcttatctca atttctcgcc atatctgcaa
     1861 acgggtggca ctctggatgc taaaaccgtg gcgattattt ctttcgcgtt gtgcggtttc
     1921 gctaactttg gttctatcgg ggtggtggtg ggggcgtttt ctgcggttgc gccacaccgt
     1981 gtgccggaaa tcgcccaact tggtttacgc gcgctggcgg cggcgacact ttctaacctg
     2041 atgagtgcta ctattgcagg attctttatt ggtttagcgt agtgcgcaat ttatgagccg
     2101 gataagatgc ggtcaagcgt cgaatccggc aacattgtta caccattggc actaatgaaa
     2161 gcgcgttatc ggcagacagg gtagggttgt ttaagctgcc gctggcgcgc gaaattgccg
     2221 cgcaggctac cgcaaaacgg gcgctgtcgc ggaaactgta tccttcaaga aagctatata
     2281 ccaggcccgc cataaaacca tcgccagcac caaaactgtc tactgtcgta tgcgctggcg
     2341 cggtcagcaa aaattgttct ccatcctttt cgctgcaata aactgactca tcgggcaaat
     2401 aaacaaacag ttgctgaaca ccttgctgat gcaatgcatt cactgcggca ttacggtcag
     2461 catcgctggt gatcgcctgt ccccataaaa tttccagctc cggtaaagtg ggtttcaggg
     2521 tgtgaatatg cgccagccag tgtttgattt tgcccgcttt gaattctgaa acggtatcga
     2581 caaacaccgg gatttcatca gcgagggtaa agacccattc cagcgcctcg gctgtcaggt
     2641 tgcaatcagc cagtaccacg cccgcatgac gaagtaaatc gcgcgacccg ttcagtagtt
     2701 gcggtgtcaa ctgttccagc agatgggtat cgttaatcgc cagcacggtt tgatcgtctc
     2761 gattggcaat tgccagatac gtcgatgtgc tttgaccatg caaacgaacg cagccggaga
     2821 cattcacgcc ggcacggcgc gtttcttcca ggagcatttc gccataaaag tcatcgccaa
     2881 tcactgaaag caaatggacg tcacggccta acagcgccag attgtgggcg atgttgcgtc
     2941 ccacgccgcc cgccgagcaa tgaattgtac cgggatgaga agccgcttgc gggtaacgga
     3001 tatccgcgat cccgcgaata tccatattga ttgtccccac cactacgcag tattcctgct
     3061 cggtgagaat gtaacctttg cctttaatcc gccctttgcg cattaaatcc ataatatgcg
     3121 ccgcaacgcg cgaacgactg atttgcagca tgtccgcaat ttcgttctgc tgaatcagcg
     3181 ggttacgccg taaaattgca aggatctcct tttcccggtt attcatcttc aggctaccgc
     3241 tttttcagtt tgttgcgctt tcagccaggc gatctcttct gcccagatat ccgggttgat
     3301 ggtttcaagg atcagcggaa tgccgtcgaa acggtcgtcc tgcatgatcc agcggaacgc
     3361 atcatgaccg atattgcctt caccgaggct atgatggcgg tcaacgcggc tgccaaaggt
     3421 gcttttcgca tcgttaaggt gcatcccgcg cagatactta aagccaacaa tacgggcaaa
     3481 atccgcgaac gttttctcgc attcggctgg agtacgcaaa tcatacccgg cagcgaaagc
     3541 atggcaggta tcaatgcaga cgccgacacg ggatttatct tccacgccgt cgataatcgc
     3601 cgcgagatgt tcgaatttaa accctaagtt actgccctga ccggcggtgt tttcaatcac
     3661 cgctgttaca ccttgagttt tatccagcgc aatgttgatg gattcggcaa tacgcgcaag
     3721 gcaatcctct tctgaaatct gcatcagatg gctgccaggg tggaagttga gcaaagaaag
     3781 ccccagttgt tcgcaacgct gcatttcatc tataaaggca tcgcgcgatt tttccagagc
     3841 ttcagtgacc ggatgtccga ggttaatcag atagctgtcg tggggaagaa tttgcgccga
     3901 tgtgtagtga tatttttcac aggctgcttt gaattcatcg atggtttgcg tcgtgagcgg
     3961 tgcggcacgc cactgacgtt ggtttttggt gaacaaggca aacgcggttg cgtcgatttc
     4021 ggcggcgcga attgcggcat ttgccagacc gccagcagca ctaacgtgcg ctccaatgta
     4081 tttcatgcga ggactcctgt taaacccgct ggaggaaaac ggtaatgata gcgggttaac
     4141 aggagcaaga tgtagtggtt tatgcgatga cgctttgaat cacatagtta atcgcaccac
     4201 caccaacaat cagccaggca aacagtacca gtgccatcag cagaggtttc gccccggctt
     4261 ttttcagcgc gctgacgtga gtggtcagac ccagcgccgc catcgccatt gccagcagga
     4321 aggtatccag cgttaccagc atgttcacca cgctctgcgg taacaggtgg aacgagttaa
     4381 agatggcaac gacgatgaac aagatggcaa accacggaat agtgattttg cttttctcgc
     4441 cgctgttcgc cccagacagc tgtttaacac gcgccgccag caggatgagg aacggagcca
     4501 gcatcatcac gcgcagcatt ttggaaataa ctgctgcgtt ttccgcatcc gggctgatgg
     4561 catgacctgc cgccaccacc tgcgccactt cgtgcacagt agaaccaatg tagataccga
     4621 aagtttccgg actaaaccat tgagacatca gcggatatat cgccgggtag aggaaaatcg
     4681 cgacggtccc gaagataaca acggttgcaa cagccacggt tactttactg gcttccgctt
     4741 tcactaccgg ctcagtcgcc agtaccgcgg cagcaccaca gatactgcta ccggcaccga
     4801 tcaaccagct ggtgtgctta tccagaccaa acactttctg ccccaggaag caagccagca
     4861 ggaaggtact ggacagcgtc aacacgtcaa tgatgatccc actgataccg acatcggcaa
     4921 tttgcgagaa cgtcagacgg aagccataaa gaatgatacc cagacgtaat aaatattgct
     4981 tggcaaacag cacaccaccg tcacagcttt tccagatgtg cggatagatg gtgttgccta
     5041 aaaccatccc caacaagatt gcgagggtga gggcactaaa cccggcaccc gcaaccgcgg
     5101 gaatggaacc accccacagg gcgaccccgg tgataactgc actcagggct aaccccggaa
     5161 taaaatgcca cagtgtacga tgttgtttct gtaaggtgat attcgtcata accctctcct
     5221 tataaccggg cataaggtta cgactaactg gtttaaaaat aaaattgatt atatatttat
     5281 aattaatctt tataagtggt aagcgactat gcacatcacc ctccggcagt tggaagtttt
     5341 tgcagaagta ttgaaaagtg gatcaaccac ccaggcgtcg gtgatgctgg cgttgtcgca
     5401 atcagcagtg agcgcagcct tgaccgacct ggaagggcag cttggcgtgc aactgtttga
     5461 tcgcgtgggg aaaagactgg ttgttaatga acacgggcgg ctgctctatc cgcgtgcgtt
     5521 ggcattgctt gaacaggcgg ttgaaatcga acaactgttt cgcgaagaca acggcgcgat
     5581 tcgtatctat gccagtagta ccatcggtaa ctacattctg cctgcagtta tcgcccgtta
     5641 tcgccatgat tatccgcagt tgccgattga acttagcgtt gggaacagcc aggacgtgat
     5701 gcaagcggtg ctggatttcc gcgttgatat tggctttatt gaaggaccgt gccacagcac
     5761 tgaaatcatt tctgaaccgt ggctggaaga cgagctggtg gttttcgccg cgccgacttc
     5821 gccgttggct cgtggtccgg tcaccttaga acagctggcc gctgcgccgt ggatcctgcg
     5881 tgaacgcggt tccggcacgc gggagattgt cgattatcta ttgctgtcac atttaccgaa
     5941 gtttgagatg gcgatggaat taggtaactc cgaggcaatc aaacatgcgg tgcgtcatgg
     6001 gttgggaatt agttgcctgt cgcgacgggt gattgaagat caattgcagg caggcacatt
     6061 aagtgaagtt gcggtccctc tgccgcgcct gatgcgtacg ttgtggcgta tacatcatcg
     6121 gcaaaaacac ctttccaacg cgctacggcg ctttctggac tattgcgatc ccgcgaatat
     6181 accgcgttaa gttgctgtac aagaacatgc tggtgctgtg tcgatttcgt gacgcagcgc
     6241 cctcagcatg cattcgccag aaaagagatt ggctgcttta cttataatcc cagggcgatc
     6301 atgaaggtgt cttataaccg tgtatttctg ccggaaggat tgccaatcgt ctgctacaat
     6361 tgcgcctcat ttttaagatg gatagcattt ttgtatggtt tccgaaacta aaaccacaga
     6421 agcgccgggc ttacgccgtg aattaaaggc gcgtcacctg acgatgattg ccattggcgg
     6481 ttccatcggt acaggtcttt ttgttgcctc tggcgcaacg atttctcagg caggtccggg
     6541 cggggcattg ctctcgtata tgctgattgg cctgatggtt tacttcctga tgaccagtct
     6601 cggtgaactg gctgcatata tgccggtttc cggttcgttt gccacttacg gtcagaacta
     6661 tgttgaagaa ggctttggct tcgcgctggg ctggaactac tggtacaact gggcggtgac
     6721 tatcgccgtt gacctggttg cagctcagct ggtcatgagc tggtggttcc cggatacacc
     6781 gggctggatc tggagtgcgt tgttcctcgg cgttatcttc ctgctgaact acatctcagt
     6841 tcgtggcttt ggtgaagcgg aatactggtt ctcactgatc aaagtcacga cagttattgt
     6901 ctttatcatc gttggcgtgc tgatgattat cggtatcttc aaaggcgcgc agcctgcggg
     6961 ctggagcaac tggacaatcg gcgaagcgcc gtttgctggt ggttttgcgg cgatgatcgg
     7021 cgtagctatg attgtcggct tctctttcca gggaaccgag ctgatcggta ttgctgcagg
     7081 cgagtccgaa gatccggcga aaaacattcc acgcgcggta cgtcaggtgt tctggcgaat
     7141 cctgttgttc tatgtgttcg cgatcctgat tatcagcctg attattccgt acaccgatcc
     7201 gagcctgctg cgtaacgatg ttaaagacat cagcgttagt ccgttcaccc tggtgttcca
     7261 gcacgcgggt ctgctctctg cggcggcggt gatgaacgca gttattctga cggcggtgct
     7321 gtcagccggt aactccggta tgtatgcgtc tactcgtatg ctgtacaccc tggcgtgtga
     7381 cggtaaagcg ccgcgcattt tcgctaaact gtcgcgtggt ggcgtgccgc gtaatgcgct
     7441 gtatgcgacg acggtgattg ccggtctgtg cttcctgacc tccatgtttg gcaaccagac
     7501 ggtatacctg tggctgctga acacctccgg gatgacgggt tttatcgcct ggctggggat
     7561 tgccattagc cactatcgct tccgtcgcgg ttacgtattg cagggacacg acattaacga
     7621 tctgccgtac cgttcaggtt tcttcccact ggggccgatc ttcgcattca ttctgtgtct
     7681 gattatcact ttgggccaga actacgaagc gttcctgaaa gataccattg actggggcgg
     7741 cgtagcggca acgtatattg gtatcccgct gttcctgatt atttggttcg gctacaagct
     7801 gattaaagga actcacttcg tacgctacag cgaaatgaag ttcccgcaga acgataagaa
     7861 ataagtttcc tcccttcctt gctaagccct ctcaaccgag agggcttttt caattccatt
     7921 tccctgacaa atcatgcgga tataaaattt aacatttgga ttgataattg ttatcgtttg
     7981 cattatcgtt acgccgcaat caaaaaaggc tgacaaatca gaggctgttc cggctttctg
     8041 ggatgatcac ctgcatacaa ataagtccac cgcgatgctg ccgtacgcaa ggggacgtga
     8101 agaaggtgtg agcgataacc cattttattt tcgtagttac ctcatggaga tatggaatgt
     8161 ttaggttgaa ccctttcgta cgggtcaggc tgtgtttgtc cgctatttct tgtgcatggc
     8221 ctgtgttagc ggtcgatgat gatggcgaaa cgatggttgt cactgcatct tccgttgaac
     8281 aaaacctcaa agatgcaccc gccagtatca gcgtcattac ccaggaagac ctgcagcgaa
     8341 aaccggtaca gaatctgaag gatgtcctca aagaagtgcc tggcgtacaa ctgacgaacg
     8401 aaggggataa ccgtaagggc gttagtattc gtggtctgga cagcagctac accctgattc
     8461 tcgtcgacgg taaacgcgtt aactcccgca atgccgtctt ccgccacaat gatttcgatc
     8521 tgaactggat cccggtcgat tccatcgaac gtattgaagt ggttcgtggc ccgatgtcgt
     8581 cgctatacgg ctccgatgcg ctcggcggtg tagtgaatat catcaccaaa aaaatcggtc
     8641 agaaatggtc gggtaccgtt accgtcgata ccaccattca ggaacatcgc gatcgcggtg
     8701 atacctataa cggtcagttc tttaccagtg gaccattaat tgatggtgtg ctgggaatga
     8761 aagcttacgg cagcctggca aaacgtgaaa aggatgaccc gcaaaactca acgaccaccg
     8821 ataccggaga aatgccgcgt attgaaggat tctccagccg cgacggcaat gtcgaatttg
     8881 cctggacacc gaatcaaaat cacgatttta ctgccggata cggtttcgac cgtcaggaac
     8941 tcgctggaca aaaaccgcct ggaacgccag aactactccg tcagccataa tgggcgttgg
     9001 gattacggca ccagcgaact gaaatactac ggtgagaaag tcgagaacaa aaaccctggc
     9061 aacagcagcc cgataacttc cgaaagcaat acggtcgacg gcaaatacac gttgccgctg
     9121 acggcgatta atcagtttct cacggttggc ggtgaatggc gtcacgacaa acttagcgat
     9181 gcggtgaacc tgaccggggg aaccagctcc aaaacgtctg ccagccagta cgcgctgttt
     9241 gtggaagatg aatggcggat cttcgagccg ctggcgctga cgaccggcgt gcgtatggac
     9301 gatcacgaaa cctacggtga acactggagt ccgcgtgcct acctggttta taacgccacc
     9361 gacaccgtaa cggtgaaagg gggctgggcg acggcattta aagcaccttc tctgttgcaa
     9421 cttagccctg actggacgag caattcctgc cgtggcgcat gtaagattgt gggtagcccg
     9481 gatctgaaac cagaaaccag cgaaagttgg gagctggggc tttactacat gggtgaagaa
     9541 ggctggctgg aagggggtga atccagcgtt accgttttcc gtaacgatgt gaaagatcgt
     9601 atcagcatca gccgtacgtc tgacgtcaac gctgcaccgg gctaccaaaa ctttgttggt
     9661 tttgagacgg gcgctaacgg acggcgcata ccggtattta gctactacaa cgttaacaaa
     9721 gctcgtattc agggcgtgga aaccgaactg aaaattccgt tcaacgatga atggaaactg
     9781 tcgatcaact acacctacaa cgatggtcgt gatgtcagca acggcgaaaa caaaccgcta
     9841 tccgatctgc cgttccatac tgctaacggt acgctggact ggaaaccgct ggcgctggaa
     9901 gactggtcat tctatgtttc tggtcactat accgggcaga aacgcgccga cagcgcgacg
     9961 gctaaaacac cgggcggtta taccatctgg aataccggcg cggcctggca ggtgactaaa
    10021 gacgtcaaac tgcgcgcagg cgtgctgaac cttggcgaca aggatctcag tcgtgacgac
    10081 tacagctata acgaagacgg acgtcgttac tttatggcag tggattatcg cttctgatga
    10141 gaagatgccc ggcgaaccgg gcggactttc acttcagtaa atactgcgca tggaagcgca
    10201 ggtgatcctc tataaaagag gcgatgaagt agtaactgtg atcatatccc ggctgaatac
    10261 gcagcgtcat cggccacgct ttctggcgcg cggcttctgc cagtaccgca ggttgcaact
    10321 ggtcggcaag aaactgatca ttatcgccct gatcgataag cgtcgggatc gcatcctgcg
    10381 cgttactggc atacatcagc gcgcaactgt cccattccag ccatgcattt ttgtcctcac
    10441 ctaaatagct gctaaacgct ttgattcccc acgggacgct gcacggattc acaattggcg
    10501 caaaggccga aacgctggtg tatttacccg gatttttcag cgccataatc agcgcaccgt
    10561 gaccacccat tgagtgaccg ctaatggcgc agcggtcgct gacattaaat tgcgactgaa
    10621 ccagcgccgg taattcatcg cgcagataat catacatccg gtaatgcgtc gcccacggcg
    10681 gttgcgtggc attaagataa aagcctgcgc cctggcctaa atcgtagcca tcgtcgttgg
    10741 caaccttttc gccgcgcggg ctggtgtctg gcatcaccag tacaatcccc agttctgccg
    10801 ccacgcgctg ggcacccgcc ttggtggtga agttctcgtc attgcaggtt aatccggaaa
    10861 gccagtacag cactggtggc ggggtgtgat cacgaggggg tgggagaaag atactgaacg
    10921 tcatcgggca gtttaaggta ctggagtcgt gtcgccagcg ttgctgccag ccttcaaaac
    10981 agcggtgctc ttcgagcatt tccatgcgtg gctccttgtt gtgttgtttg caatttcttc
    11041 atcataccgt ttattcaatg tgctgtgagt aactttcact tccgtatttg cataacgatg
    11101 ttttaacatc tgctgatgaa aggcagcggc aattacaata attatcgctg tgaatactgg
    11161 attatgtgcg ccgcctcacg cacaataatc aggctgtaaa tcagcttaat aactttgccc
    11221 ccacgcaggg cggaggcgtc acacctgcag gagaaatcat aaatgccatc actcagtaaa
    11281 gaagcggccc tggttcatga agcgttagtt gcgcgaggac tggaaacacc gctgcgcccg
    11341 cccgtgcatg aaatggataa cgaaacgcgc aaaagcctta ttgctggtca tatgaccgaa
    11401 atcatgcagc tgctgaatct cgacctggct gatgacagtt tgatggaaac gccgcatcgc
    11461 atcgctaaaa tgtatgtcga tgaaattttc tccggtctgg attacgccaa cttcccgaaa
    11521 atcaccctca ttgaaaacaa aatgaaggtc gatgaaatgg tcaccgtgcg cgatatcact
    11581 ctgaccagta cctgtgaaca ccattttgtt accatcgatg gcaaagcgac ggtggcttat
    11641 atcccgaaag attcggtgat cggtctgtca aaaattaacc gtatcgtgca gttctttgcc
    11701 cagcgtccgc aggtgcagga acgtctgacg cagcaaattc ttattgcgct acaaacgctg
    11761 ctgggcacca ataacgtggc tgtctccatt gatgcggtgc attactgcgt gaaagcgcgt
    11821 ggcatccgcg atgcaaccag tgccacaaca acgacctctc ttggtggatt gttcaaatcc
    11881 agtcagaata cgcgccacga gtttctgcgc gctgtgcgtc atcacaactg attaaaaggc
    11941 aggaaccatg gagcgcaacg taacgctcga ttttgttcgc ggcgtcgcca ttctggggat
    12001 cctgctatta aacatcagcg cctttgggct accaaaggcg gcttatctca atcgcgcctg
    12061 gtacggcgct attacgccgc aggatgcatg gacctgggca tttctcgatc tcatcggcca
    12121 ggtgaaattc ctcacgcttt ttgcgctgct gtttggtgcg ggcctgcaaa tgttgctgcc
    12181 ccgtggcaga cgctggatcc agtcgcggtt aacgctgtta gtcttgctgg gttttattca
    12241 cggtttattg ttctgggacg gcgatattct gctggcttac gggctggtgg gcttaatctg
    12301 ctggcggctg gtgcgcgatg cgccatcggt aaaaagcctg tttaatacag gcgtcatgct
    12361 ttatctggtg gggcttggcg ttttgctgtt attggggctg atttccgaca gccagaccag
    12421 ccgcgcctgg acgccggatg catcggctat tttgtatgaa aaatactgga agcttcacgg
    12481 cggcgttgaa gcgatcagta atcgtgccga tggtgttggc aacagtttac tggcactggg
    12541 cgcacagtat ggctggcaac tggcagggat gatgctcatt ggtgcggcgc tgatgtgcag
    12601 cggctggctg aaagggcagt tcagcttacg tcactatcgt cgtactggtt ttgtgctggt
    12661 ggcgattggg gtgaccatta accttcctgc catcgccctg caatggcagc tggactgggc
    12721 gtatcgctgg tgtgccttct tacttcaaat gccgcgggaa ctgagtgcgc cgtttcaggc
    12781 gattggctat gcgtcgctgt tttatggctt ctggccgcaa ttgagccgct ttaagctggt
    12841 gcttgcgatc gcctgcgtcg gacggatggc gctgaccaac tatctattgc aaacgctgat
    12901 ttgtaccatg cttttttacc acctcggttt gtttatgcat tttgaccgcc tggagctgct
    12961 ggcgtttgtt attccggtat ggctggcgaa tatcctcttc tctgttatct ggctgcgtta
    13021 cttccgccag gggccggtgg aatggctctg gcgtcagtta actttgcgtg ctgccggaac
    13081 ggcaatatct aaaacatcaa gataacgatc tggatcacat tcgttaacaa aacggctgta
    13141 accgtttcca ttgctgtgac tcgattcacg aagtcctgta ttcagtgctg acaaaatagc
    13201 cgccagcaag cagtcattta ctgcaatctc ataacaggta gtgaatatga tcaccattcg
    13261 tgatgtagcg cgtcaggctg gcgtctctgt ggcaacggtt tcccgggtgc tcaataacag
    13321 cacgctggtc agtgccgaca cgcgtgaagc agtaatgaaa gccgtgagtg agctggatta
    13381 tcggccaaac gccaatgccc aggcgctggc aactcaggtt agcgacacca ttggcgtggt
    13441 ggtgatggac gtttctgatg cgtttttcgg cgcgctggta aaagcggtgg atctagtcgc
    13501 tcagcagcat cagaaatacg tgctaatcgg caatagctat catgaagcgg aaaaagagcg
    13561 tcacgccatt gaggtgttaa ttcgccagcg ttgtaatgcg ttgattgttc actcaaaagc
    13621 attgagtgac gatgaactgg cgcaatttat ggataacatt cccggtatgg tgttaatcaa
    13681 ccgcgttgtg ccggggtacg cccatcgttg cgtttgcctg gataatctca gcggtgcccg
    13741 aatggcgacg cgcatgttgc tgaataacgg tcatcaacgt attggttatc tttcttccag
    13801 tcacggcatt gaagatgacg ccatgcgtaa agcaggctgg atgagtgcgt tgaaagagca
    13861 ggatattatt ccgccggaaa gctggattgg cactggtacg ccggacatgc cgggcggtga
    13921 ggcggcgatg gttgaactgc tggggcgcaa tctacaactt accgctatat ttgcttataa
    13981 cgacaatatg gccgctggcg cactgacagc attaaaagat aatggcattg cgattccgtt
    14041 acatctctca atcatcggtt tcgatgatat tcccatcgcc cgttacaccg acccgcaatt
    14101 aacgaccgtg cgttatccca ttgcttcaat ggctaaatta gccaccgaac tggccttgca
    14161 gggggcagca ggcaatattg atcctcgtgc cagccactgt tttatgccga cgttagtgcg
    14221 tcgccattct gtcgcaacgc gccagaatgc ggcggcgatc actaactcaa caaatcaggc
    14281 gatgtaaccg ctttcaatct gtgagtgatt tcacagtatc ttaacaatgt gatagctatg
    14341 attgcaccgt tttaacgttg taacccgtat gtaacagtga ataatcactt tcaccgaggt
    14401 aatagcgtca taacaacaat taaagccgtt ttctggagcg ttaccgggca tggaagaacg
    14461 aattttaaaa agtgagcttc ggcgttcagt aacacttcat taactctact gccctgccga
    14521 gcatttatct caagcactac cctgcataag aaaaaccgga gataccatga ataagaaggt
    14581 gttaaccctg tctgctgtga tggccagcat gttattcggt gccgctgcac acgctgctga
    14641 tactcgcatt ggtgtaacaa tctataagta cgacgataac tttatgtctg tagtgcgcaa
    14701 ggctattgag caagatgcga aagccgcgcc agatgttcag ctgctgatga atgattctca
    14761 gaatgaccag tccaagcaga acgatcagat cgacgtattg ctggcgaaag gggtgaaggc
    14821 actggcaatc aacctggttg acccggcagc tgcgggtacg gtgattgaga aagcgcgtgg
    14881 gcaaaacgtg ccggtggttt tcttcaacaa agaaccgtct cgtaaggcgc tggatagcta
    14941 cgacaaagcc tactacgttg gcactgactc caaagagtcc ggcattattc agggcgattt
    15001 gattgctaaa cactgggcgg cgaatcaggg ttgggatctg aacaaagacg gtcagattca
    15061 gtccgtactg ctgaaaggtg aaccgggcca tccggatgca gaagcacgta ccacttacgt
    15121 gattaaagaa ttgaacgata aaggcatcaa aactgaacag ttacagttag ataccgcaat
    15181 gtgggacacc gctcaggcga aagataagat ggacgcctgg ctgtctggcc cgaacgccaa
    15241 caaaatcgaa gtggttatcg ccaacaacga tgcgatggca atgggcgcgg tagaagcact
    15301 gaaagcacac aacaagtcca gcattccggt gtttggcgtc gatgcgctgc cagaagcgct
    15361 ggcgctggtg aaatccggtg cactggcggg cacagtactg aacgatgcta acaaccaggc
    15421 gaaagcgacc tttgatctgg cgaaaaacct ggccgatggc aaaggtgcgg ctgatggcac
    15481 caactggaaa atcgacaaca aagtggtccg cgtaccttat gttggcgtag ataaagacaa
    15541 cctggctgaa ttcagcaaga aataagactg attgggcgca gtcgtttact gcgcccttat
    15601 tgtatggcca acaaggtaaa attatatggt cagctcaacg actccgtctt ccggggaata
    15661 cttgttggaa atgagcggta tcaacaagtc ctttcctggt gttaaggcac ttgataacgt
    15721 taatttaaaa gtccggccac attctatcca tgcattaatg ggggaaaacg gtgcaggaaa
    15781 atcgacatta ttaaaatgcc tgtttggtat ttatcaaaaa gactccggca ccattttatt
    15841 ccagggtaaa gagatcgatt tccattccgc caaagaggca ctggaaaatg gtatttcgat
    15901 ggtacaccag gagttaaacc tggtattaca acgttcggtg atggataaca tgtggctgag
    15961 gcgatatccc accaaaggca tgtttgtcga tcaggacaaa atgtaccgcg aaaccaaagc
    16021 gatttttgat gaactggata ttgatatcga tccgcgtgcg cgcgtcggca cattatccgt
    16081 ttcgcaaatg cagatgatcg aaatcgccaa agcgttttcc tataacgcga aaattgtgat
    16141 tatggatgaa ccgacttctt cgttaaccga aaaagaggtc aatcatctgt tcactattat
    16201 tcgtaaatta aaagagcgcg gctgcggtat tgtttatatc tcgcataaaa tggaagaaat
    16261 cttccagtta tgtgatgaag ttaccgtatt gcgcgacggt cagtggatcg ccaccgaacc
    16321 gctggcagga ctgacgatgg acaagatcat cgccatgatg gttgggcgtt ctcttaatca
    16381 gcgttttcct gacaaagaaa acaagccggg cgaagtcatc ctcgaggtgc gtaacctaac
    16441 gtcactgcgc cagccgtcga ttcgcgatgt ctcgtttgat ctgcataaag gggagatcct
    16501 cggtattgcc gggctggtgg gggcgaaacg taccgatatt gttgagacgt tatttggtat
    16561 tcgcgagaaa tcggctggca ccattacgtt gcacggcaaa cagatcaata accataatgc
    16621 caacgaagcc ataaaccacg gatttgcact ggtaactgag gagcgccgct caacgggaat
    16681 ttatgcctat ctggatattg gttttaactc gttaatttcc aatattcgca actacaaaaa
    16741 taaagttggt ttactggata aatcgcggat gaaaagcgat acccagtggg tgattgattc
    16801 gatgcgggta aaaacaccgg ggcatcggac gcaaattggt tcgctctcag gtggtaatca
    16861 gcaaaaggtg attattgggc gctggctact aacgcaacca gaaatattaa tgctcgatga
    16921 accgacgcgc ggtattgatg tcggggcgaa gtttgagatc tatcagttaa ttgccgaact
    16981 ggcgaagaaa ggcaaaggga ttattattat ctcctctgaa atgcctgagt tgttagggat
    17041 aacagaccgt attctggtca tgagcaatgg tctcgtttcc ggaattgtcg acacaaaaac
    17101 aacaacgcaa aacgaaattc tgcgtcttgc gtctttgcac ctttaagatt aggggcttcc
    17161 catgagtgcg ttaaataaga aaagttttct tacttacctg aaagagggcg gtatttacgt
    17221 cgttctttta gttttgctgg cgattattat tttccaggac ccaacatttt taagtctgtt
    17281 gaacttaagt aatattctca cccagtcatc ggtgcgtatt attatcgcgc tcggtgtggc
    17341 agggttaatt gtcacccagg ggaccgacct ttctgcgggg cgtcaagtag ggctggcagc
    17401 agtggtggca gcgacattat tgcagtccat ggataacgcc aataaagtgt tcccggaaat
    17461 ggcgacgatg ccgattgcgc tggttattct gattgtctgt gccattggtg cggtgatcgg
    17521 tttgatcaac ggtctgatta tcgcttatct caacgttacg ccgttcatta ccacgctcgg
    17581 cacgatgatc atcgtctatg gcatcaactc gctctattac gactttgtcg gggcgtcgcc
    17641 aatttctggt tttgacagtg gcttctctac ctttgctcag ggctttgtcg cgctggggag
    17701 tttccgtctc tcttacatca ccttctacgc gttgattgcg gtggcgttcg tctgggtgtt
    17761 gtggaacaaa acccgcttcg gtaagaacat ttttgccatt ggcggtaacc cggaagcggc
    17821 aaaagtatct ggtgtcaacg tcggcctgaa cctgctgatg atctacgcgt tgtctggcgt
    17881 gttctatgcc tttggcggga tgttagaagc cggacgtatc ggctctgcca ccaacaacct
    17941 cggctttatg tatgagctgg atgctatcgc ggcgtgcgtg gtaggcggtg tatcgttcag
    18001 cggcggtgtg gggacggtga ttggcgtggt gaccggggta attattttta ccgtcatcaa
    18061 ctatggcctg acgtatatcg gcgtaaaccc atgctggcag tacatcatca aaggggcgat
    18121 tattatcttc gccgtagcgc tggattcact gaaatacgcg cgtaagaaat gatgtgaatg
    18181 tggtccgcat tcggtcataa acgcacataa catcatgatc tgtgtggttt tgtaggccgg
    18241 ataaggcgtt cacgccgcat ccggcaacag gagccaaatg ccggatgcaa cgctggcgcg
    18301 ttttatccgg cctacaataa gctcaacata ctgatttgta tggttttgta ggccggataa
    18361 ggcgttcaag ccgcatccgg cgacaggaac caaatgccgg atgtgacgcg ggttctacaa
    18421 cgttaccggg tgttctttct cgcctttctt aaacttcact tccccgagct caatacaacc
    18481 caccgggcag acgtgaccac aaagcagaca acccacacat ttctcggtat tacaatgcgg
    18541 tgtgcgggtt ttctcgctcc attccatcgc ctggtgaccg ccgtcgtaac aggaaatata
    18601 acagcgtcca cagccaacac atttgtcaag attgatacgg ggatagacaa tataactgcg
    18661 gtctaaatct tccgccggga caatattgtt attcgccaga cctaccatct cctgcaacga
    18721 atcaaatccc tgatcggcga gataatgcga taacccgctc gccatatctt ctacgatgcg
    18781 attgccgtac tgcataatgc cggtggtgac ctgtaacgtt gctgcgccga gcaataaaaa
    18841 ctccgccgca tcctcccagg tttcaatgcc gccgataccg ctgattggga aatcgcgcag
    18901 ttctggatgg gtgcgcattt gctgaatgaa gcgcagggcg atcggtttta ccgctttacc
    18961 ggaatatccg gaaatactcg atttaccgtt aacgatcggc ataccgattt tctgattaag
    19021 atcgatattg gtgatggatt taacggtgtt aattgccgca atgccatctg cgccgccgcg
    19081 cttcgccgcc agcgccactt cgcacatatc accgatattc ggcgtcatct tcgccagcat
    19141 tggcagcgtg gaaccgcgtt tcaccgcccg acaatatttt tctaccagca ccggactttg
    19201 cccgacatcg ctacccatcg catgagaagt catttgcgga caggagaagt tacactcgat
    19261 catatccgcg ccagctcctc ccattgctgc tcattttccc ccatgatcga
//
LOCUS       DADMJB010000072        19150 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.072, whole genome shotgun sequence.
ACCESSION   DADMJB010000072 DADMJB010000000
VERSION     DADMJB010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19150
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.072"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..909)
                     /locus_tag="JN078_002213"
     CDS             complement(<1..909)
                     /locus_tag="JN078_002213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017441594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /protein_id="HAY9041410.1"
                     /translation="MTNFTTSTPHDALFKSFLTHPDTARDFMEIHLPKDLRELCDLDS
                     LKLESASFVDEKLRALHSDILWSVKTREGDGYIYVVIEHQSREDIHMAFRLMRYSMAV
                     MQRHIEHDKRRPLPLVIPMLFYHGSRSPYPWSLCWLDEFAAPTTARKLYSAAFPLVDV
                     TVVPDDEIVQHRRVALLELIQKHIRQRDLMGLIDQLVVLLVTECANDSQITALLNYIL
                     LTGDEARFKAFISELTRRMPHHRERIMTIAERIHNDGWLLGRERGRKEGKVEGERSLL
                     RLLLQNGADPEWIQRYTGLSAEQMQAL"
     gene            1376..2608
                     /gene="mdtM"
                     /locus_tag="JN078_002214"
     CDS             1376..2608
                     /gene="mdtM"
                     /locus_tag="JN078_002214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtM"
                     /protein_id="HAY9041411.1"
                     /translation="MPRFFARHAATLFFPMALILYDFAAYLSTDLIQPGIINVVRDFN
                     ADVSLAPAAVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATMFTTSMT
                     QFLIARAIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLIAPIIGPLSGAAL
                     MHFVHWKVLFAIIAVMGFISFVGLLLAMPETVKRGAVPFSAKSVFRDFRNVFCNRLFL
                     FGAATISLSYIPMMSWVAVSPVILIDAGSLTTSQFAWTQVPVFGAVIVANAIVARFVK
                     DPTEPRFIWRAVPIQLVGLALLIIGNLLSPHVWLWSVLGTSLYAFGIGLIFPTLFRFT
                     LFSNNLPKGTVSASLNMVILMVMSVSVEIGRWLWFNGGRLPFHLLAVVAGVIVVFTLA
                     GLLNRVRQHQAAELAEER"
     gene            2649..3929
                     /locus_tag="JN078_002215"
     CDS             2649..3929
                     /locus_tag="JN078_002215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HAY9041412.1"
                     /translation="MNKLIELRRAKMLALSLLLIAAATFVVTLFLPPNFWVSGVKAIA
                     EAAMVGALADWFAVVALFRRVPIPIISRHTAIIPRNKDRIGENLGQFVQEKFLDTQSL
                     VALIRRHEPALLIGNWFSQPENARRVGQHLLQIMSGFLELTDDARIQRLLKRAVHRAI
                     DKVDLSGTSALMLESMTKNDRHQVLLDTLIAQLIALLQRDKSRKFIAQQIVRWLESEH
                     PLKAKILPTEWLGEHSAELVSDAVNSLLDDISRDRAHQIRHAFDRATFALIDKLKNDP
                     EMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSEDSRVKERIARAGQWFGE
                     TLIADDALRASLNGHLEQAAHRVAPEFSAFLTRHISDTVKSWDARDMSRQIELNIGKD
                     LQFIRVNGTLVGGCIGLILYLLSQLPALFPLSNF"
     gene            4045..5197
                     /locus_tag="JN078_002216"
                     /pseudo
     CDS             4045..5197
                     /locus_tag="JN078_002216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418755.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacyl-CoA dehydratase subunit D"
     gene            5207..5975
                     /locus_tag="JN078_002217"
                     /pseudo
     CDS             5207..5975
                     /locus_tag="JN078_002217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313324.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            5972..6229
                     /locus_tag="JN078_002218"
     CDS             5972..6229
                     /locus_tag="JN078_002218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3343 domain-containing protein"
                     /protein_id="HAY9041413.1"
                     /translation="MKEFLFLFHSTVGVIQTRKALQAAGMTFRVSDIPRDLRGGCGLC
                     IWLTCPPGEEIQWVIPGLTESIYCQQDGVWRCIAHYRVSPR"
     gene            6183..7154
                     /locus_tag="JN078_002219"
     CDS             6183..7154
                     /locus_tag="JN078_002219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000225344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjiK family protein"
                     /protein_id="HAY9041414.1"
                     /translation="MVSGAALHITGFLRVKDSLRSLRILLDILLICLKGITVTKSISL
                     SKRISVIVILFAIVAVCTFFVQSCARKSNHAASFQNYHATIDGKEIAGITNNISSLTW
                     SAQSNTLFSTINKPAAIVEMTTNGDFIRTIPLDFVKDLETIEYIGDNQFVISDERDYA
                     IYVISLTPNSEVKILKKIKIPLQDSPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN
                     GLLSSNELHISKDEALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIG
                     EISLTKGSRGLSHNIKQAEGIAMDASGNIYIVSEPNRFYRFTPKSSH"
     gene            7222..8394
                     /locus_tag="JN078_002220"
     CDS             7222..8394
                     /locus_tag="JN078_002220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9041415.1"
                     /translation="MPSSSHPVERFSFSTALFGMLVLTLGMGLGRFLYTPMLPVIMAE
                     GAFSFSQLSWIASGNYAGYLAGSLLFSFGAFHQPSRLRPFLLVSALARGLLILAMAWL
                     PPFILVLLIRFLAGVASAGMLIFGSTLIMQHTRHPFVLAALFSGVGIALGNEYVLAGL
                     HFAFSSQTLWQGAGALSGMMLIALTLLMPSKKHAIAPMPLAKTEQQIMSWWLLAILYG
                     LAGFGYIIVATYLPLMAKDAGSPLLTAHLWTLVGLSIVPGCFGWLWAAKRWGALPCLT
                     ANLLVQAISVLLTLASDSPLLLIISSIGFGGTFMGTTSLVMTIARQLSVPGNLNLLGF
                     VTLIYGIGQILGPALTSMLGNGTSALAGATLCGAAALFIAALISTVQLFKLQVVTS"
     gene            complement(8407..9064)
                     /gene="kptA"
                     /locus_tag="JN078_002221"
                     /pseudo
     CDS             complement(8407..9064)
                     /gene="kptA"
                     /locus_tag="JN078_002221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709901.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2'-phosphotransferase"
     gene            9212..9894
                     /locus_tag="JN078_002222"
                     /pseudo
     CDS             9212..9894
                     /locus_tag="JN078_002222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418750.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            9891..10352
                     /locus_tag="JN078_002223"
     CDS             9891..10352
                     /locus_tag="JN078_002223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041416.1"
                     /translation="MTTQVRKNVMDMFIDGARRGFTIATTNLLPNVVMAFVIIQALKI
                     TGLLDWVGHICEPVMALWGLPGEAATVLLAALMSMGGAVGVAASLATAGALTGHDVTV
                     LLPAMYLMGNPVQNVGRCLGTAEVNAKYYPHIITVCVINALLSIWVMQLIV"
     gene            10365..11537
                     /gene="iadA"
                     /locus_tag="JN078_002224"
     CDS             10365..11537
                     /gene="iadA"
                     /locus_tag="JN078_002224"
                     /EC_number="3.4.19.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-aspartyl-peptidase"
                     /protein_id="HAY9041417.1"
                     /translation="MIDYTAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPS
                     DIVPNCTVVDLSGQILCPGFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVG
                     LLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIG
                     VKCAISDHRSAAPDVYHLANMAAESRVGGLLGSKPGVTVFHMGDSKKALQPIYDLLEN
                     CDVPISKLLPTHVNRNVPLFEQALEFARKGGTIDITSSIDEPVAPAEGIARAVQAGIP
                     LARVTLSSDGNGSQPFFDDEGNLTHIGVAGFETLLETVQVLVKDYDFSISDALRPLTS
                     SVAGFLNLSGKGEILPGNDADLLVMTPELRIEQVYARGKLMVKDGKACVKGTFETA"
     gene            11602..12513
                     /gene="hypT"
                     /locus_tag="JN078_002225"
                     /gene_synonym="qseD"
     CDS             11602..12513
                     /gene="hypT"
                     /locus_tag="JN078_002225"
                     /gene_synonym="qseD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypochlorite stress DNA-binding transcriptional
                     regulator HypT"
                     /protein_id="HAY9041418.1"
                     /translation="MDDCCAVLHNIETKWLYDFLTLEKCRNFSQAAVSRNVSQPAFSR
                     RIRALEQAIGVELFNRQVTPLQLSEQGKIFHSQIRHLLQQLESNLAELRGGSDYAQRK
                     IKIAAAHSLSLGLLPSIISQMPPLFTWAIEAIDVDEAVDKLREGQSDCIFSFHDEDLL
                     EAPFDHIRLFESQLFPVCASDEYGEAIFNLAQPHFPLLNYSRNSYMGRLINRTLTRHS
                     ELSFSTFFVSSMSELLKQVALDGCGIAWLPEYAIQQEIRSGQLVVLNRDELVIPIQAY
                     AYRMNTRMNPVAERFWRELRELEIVLS"
     gene            complement(12506..12898)
                     /gene="iraD"
                     /locus_tag="JN078_002226"
     CDS             complement(12506..12898)
                     /gene="iraD"
                     /locus_tag="JN078_002226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313312.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraD"
                     /protein_id="HAY9041419.1"
                     /translation="MMRQSLQAVLPEISGNKTSLLRKSVCSDLLTLFNSPHSALPSLL
                     VSGMPEWQVHNPSDKHLQSWYCRQLRSALLFHEPRIAALQVNLKEAYCHTLAISLEIM
                     LYHDDEPLTFDLVWDNGGWRSATLENVS"
     gene            complement(12895..12978)
                     /locus_tag="JN078_002227"
     CDS             complement(12895..12978)
                     /locus_tag="JN078_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iraD leader peptide"
                     /protein_id="HAY9041420.1"
                     /translation="MENEHQYSGARCSGQAAYVAKRQECAK"
     gene            13570..14400
                     /locus_tag="JN078_002228"
     CDS             13570..14400
                     /locus_tag="JN078_002228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2686 family protein"
                     /protein_id="HAY9041421.1"
                     /translation="MSMPLSNALQSQIITDNHFLHHPKVDNKLTREYEYTRMDTENIY
                     LLPLTRGNNHNYDGKSVVEIRKLNIGKQSWPFNYATDTCREFNGITTTGRMLYRNLKI
                     TSALDEIYGGICKKAHAATELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGYNVPGYA
                     GTTIGYISTLPASQAKRWTNEQPRIDIYIDQIITVSGVANSSGFALAALLNANIGMGN
                     DPIIGIEAYPGTAEIHAKMGYNVIPGDEDAPLKRMTLQPSSLPELFELKNGEWNYIGK
                     "
     gene            complement(14541..15314)
                     /gene="uxuR"
                     /locus_tag="JN078_002229"
     CDS             complement(14541..15314)
                     /gene="uxuR"
                     /locus_tag="JN078_002229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Uxu operon transcriptional regulator"
                     /protein_id="HAY9041422.1"
                     /translation="MKSATSAQRPYQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLD
                     VTRTVVREALIMLEIKGLVEVRRGAGIYVLDSSGSHNTDSPDANVCNDAGPFELLQAR
                     QLLESNIAEFAALQATREDIVKMRQALQLEERELASSAPGSSESGDMQFHLAIAEATH
                     NSMLVELFRQSWQWRENNPMWIQLHSHLDDSLYRKEWLGDHKQILAALIKKDARAAKL
                     AMWQHLENVKQRLLEFSNVDDIYFDGYLFDSWPLDKVDA"
     gene            complement(15529..16989)
                     /locus_tag="JN078_002230"
     CDS             complement(15529..16989)
                     /locus_tag="JN078_002230"
                     /EC_number="1.1.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructuronate reductase"
                     /protein_id="HAY9041423.1"
                     /translation="MTTIVDSNLPVARPSWDHSRLESRIVHLGCGAFHRAHQALYTHH
                     LLESTDSDWGICEVNLMPGNDRVLIENLKKQQLLYTVAEKGAESTELKIIGSMKEALH
                     PEIDGCEGILNAMARPQTAIVSLTVTEKGYCADAASGQLDLNNPLIKHDLENPTAPKS
                     AIGYIVEALRLRREKGLKAFTVMSCDNVRENGHVAKVAVLGLAQARDPQLAAWIEENV
                     TFPCTMVDRIVPAATPETLQEIADQLGVYDPCAIACEPFRQWVIEDNFVNGRPDWDKV
                     GAQFVADVVPFEMMKLRMLNGSHSFLAYLGYLGGYETIADTMTNPDYRKAAFALMMQE
                     QAPTLSMPEGTDLKAYATLLIERFSNPSLRHRTWQIAMDGSQKLPQRLLDPVRLHLQN
                     GGSWRHLALGVAGWMRYTQGVDEQGNAIDVVDPMLAEFQKINAQYQGADRVKALLGLS
                     GIFADDLPQNADFVGAVTAAYQQLCERGARECVAAL"
     gene            complement(17070..18254)
                     /gene="uxuA"
                     /locus_tag="JN078_002231"
     CDS             complement(17070..18254)
                     /gene="uxuA"
                     /locus_tag="JN078_002231"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709912.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HAY9041424.1"
                     /translation="MEQTWRWYGPNDLVSLADVRQAGATGVVTALHHIPNGEVWSVEE
                     ILKRKAIVEDAGLVWSVVESVPIHEDIKTHTGNYEQWIANYQQTLRNLAQCGIRTVCY
                     NFMPVLDWTRTDLEYVLPDGSKALRFDQIEFAAFEMHILKRPGAEADYTEEEIAQAAE
                     RFATMSDEDKARLTRNIIAGLPGAEEGYTLDQFRKHLELYKDIDKAKLRENFAVFLKA
                     IIPVAEEVGVRMAVHPDDPPRPILGLPRIVSTIEDMQWMVDTVNSMANGFTMCTGSYG
                     VRADNDLVDMIKQFGPRIYFTHLRSTMREDNPKTFHEAAHLNGDVDMYEVVKAIVEEE
                     HRRKAEGKEDLIPMRPDHGHQMLDDLKKKTNPGYSAIGRLKGLAEVRGVELAIQRAFF
                     SR"
     gene            18594..18798
                     /locus_tag="JN078_002232"
                     /pseudo
     CDS             18594..18798
                     /locus_tag="JN078_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031542.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(19041..>19150)
                     /locus_tag="JN078_002233"
     CDS             complement(19041..>19150)
                     /locus_tag="JN078_002233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY9041425.1"
                     /translation="TSAVSLGLTANYARTGGQVTAGNVQSIIGVTFVYQ"
BASE COUNT         4474 a         4870 c         4807 g         4999 t
ORIGIN      
        1 taatgcctgc atttgctctg ccgaaagtcc ggtatatcgt tgtatccatt caggatcggc
       61 cccattctgc aacaacaatc ggaggaggct ccgttcccct tctactttcc cttctttcct
      121 ccccctctcc cttcccaaca gccatccatc attatgaatt cgctctgcaa ttgtcattat
      181 tcgctccctg tggtgtggca ttcgcctggt aagttcgctg ataaacgcct taaaacgcgc
      241 ttcatcgcca gtcagtaaaa tgtaatttaa cagcgcagtt atctggctgt cattagcaca
      301 ctctgtaacc agtaatacta ccagttggtc aataagcccc atcaaatcgc gctggcgaat
      361 atgcttttgg atcaactcca acagggcgac tctgcgatgc tgcacaatct cgtcgtctgg
      421 cacgacagtg acatccacca gcgggaacgc tgcgctataa agtttccgtg cggtagtcgg
      481 ggcggcaaat tcgtccagcc agcacaggga ccaggggtaa ggactacggc taccgtgata
      541 aaacagcatc gggataacca gcggtagcgg ccggcgttta tcatgctcga tatggcgctg
      601 catcaccgcc atggaatatc gcatcaggcg aaatgccata tgaatatcct cgcggctctg
      661 atgttcaatc actacgtaaa tataaccatc accttcacgg gtctttaccg accacagaat
      721 atcggagtgt agcgcccgca atttttcatc gacaaagctg gcggattcca gttttaagct
      781 gtcgagatcg cacagttcac gtaaatcttt gggtaagtgg atctccataa aatcccgcgc
      841 ggtgtcaggg tgagtgagaa aggatttaaa taatgcgtca tgtggcgtgc tggtcgtgaa
      901 gtttgtcatg gcgatccgtc acctgtagat aagatggccc gactttagcg actaacaaaa
      961 ccattctcac ccggcaattt ctcgttcccc gaggtgcttt ccaggcgtct gcaaacgata
     1021 catttttccg gaaacaggct cgcgttttac atttcctgta cccggcagat attccccttt
     1081 ccaccgcgct cttttgatta accgcaaatt ttaattacac ttaaggtgta tattttctat
     1141 gcaacccatc aattaaagag gtgtaatgtg ctgatgacta tttgtaatcg ttatacattc
     1201 tgacctggag tcagaaggta tttctctgtc tgtgtgttca caggcagtgt ggttgattac
     1261 atgaaattca gtacatttgc agtctcgttg cccttctcgc ctgcctttcg tcattaccga
     1321 cggtattgaa tttcgttttc cccgttgggg ttctccgaac aaggagttgt ttgttatgcc
     1381 acgttttttt gcccgccatg ccgccacgct gtttttcccg atggcgttga ttttgtatga
     1441 ctttgccgcg tacctgtcga cggatctgat ccagccgggg atcattaatg tggtccgtga
     1501 ttttaatgcc gatgtcagtc tggccccggc agccgtcagt ctctatctcg cgggcggtat
     1561 ggcgttacag tggctgctgg ggccgctttc cgacaggatt ggccgcaggc cggtgctgat
     1621 taccggggcg ctaatattta cccttgcctg cgctgcgaca atgttcacaa cgtctatgac
     1681 acagtttctt atcgcgcgtg caattcaggg caccagtatc tgttttattg ccaccgttgg
     1741 ttatgtcacg gtgcaggagg cgttcggcca gacaaaaggg atcaagttga tggcgattat
     1801 cacctccatc gtactgattg cgccgattat tggcccgctt tccggcgcag ctctgatgca
     1861 ctttgtgcac tggaaagtcc tttttgccat cattgcagtt atgggtttta tctcatttgt
     1921 tggcttactg ctggcgatgc cagagacggt gaagcgcggc gcggttccat ttagcgccaa
     1981 aagcgtcttt cgcgattttc gtaatgtctt ttgcaatcgg ctgttcctct ttggcgcagc
     2041 aaccatctct ttaagctata tcccaatgat gagttgggtg gctgtctcgc cggtgatcct
     2101 gatcgacgcg ggcagcttaa caacttcgca gttcgcctgg acacaggttc cggtgttcgg
     2161 cgcggtgatt gtcgcgaatg ccatcgtggc gcgtttcgtt aaagatccga ccgaaccgcg
     2221 ctttatctgg cgtgctgtac ccattcaact ggtcggcctc gcgctgttga ttatcggcaa
     2281 tctgctgtca ccgcacgtct ggctgtggtc ggtgctgggc accagtttgt atgctttcgg
     2341 gattggtttg atcttcccga ccttattccg ctttacgctt ttttccaata acttaccgaa
     2401 agggaccgtc tccgcatcgc tgaatatggt gatcctgatg gtgatgtctg tctcggtcga
     2461 aatcggccgc tggctgtggt ttaacggcgg tcgcttgccg tttcatctgt tagccgtcgt
     2521 ggcgggcgtt atcgtcgttt tcaccctggc aggattgctt aatcgcgtgc gccaacatca
     2581 ggctgccgag ctggcggagg agcggtgatt tttgcgcgat cctgccgtca ggctctattc
     2641 ttaacgttat gaataaactc attgaactca gacgcgccaa aatgttggcg ctctctttac
     2701 tgcttatcgc cgctgctacc tttgtcgtta cgctgttttt gccgcccaat ttttgggtga
     2761 gcggcgtgaa ggcgattgct gaagcggcga tggtcggcgc gctggcggac tggtttgcgg
     2821 tggtggcgct gtttcgccgc gtgccgattc cgatcatttc tcgtcatacg gcgattatcc
     2881 cgcgtaataa agaccggatt ggcgaaaatc tcggtcagtt cgtgcaggaa aaatttctcg
     2941 atacccagtc gctggtggca ttgattcgac gtcacgaacc ggcgttgttg attggcaact
     3001 ggtttagtca gccggagaac gcccgccgcg ttggtcagca tctgttgcag atcatgagcg
     3061 gttttcttga actgaccgat gatgcgcgta ttcagcgcct gcttaagcgc gcggtccatc
     3121 gggcgattga taaggtcgat ctttccggaa ccagtgcgtt gatgctggag agtatgacca
     3181 aaaacgatcg tcatcaggtg ctgctcgata cgctgatcgc acagttgatc gcccttctcc
     3241 agcgcgataa atcgcgcaag tttattgccc agcaaattgt tcgctggctg gagagcgagc
     3301 atccgctgaa agccaaaatt ttgcctactg aatggctggg cgaacatagc gcggagttgg
     3361 tttctgacgc ggtgaattct ttgcttgatg atatcagccg cgatcgtgcg catcagatcc
     3421 gtcatgcgtt tgatcgcgcc acttttgccc tgatcgacaa gctgaaaaac gatccagaaa
     3481 tggcagcgcg agccgatgcc gtaaaaagtt atctgaaaga agatgaagct tttaaccgct
     3541 atctcagtga attgtggggg gatttacggg aatggctgaa agcggatatc aacagtgaag
     3601 attctcgtgt gaaagaacgt atcgcgcggg cgggtcaatg gtttggcgaa acgttaattg
     3661 ccgatgatgc cttgcgggca tcgttaaatg gtcacctgga acaagccgcg caccgcgtcg
     3721 cgcctgagtt ttccgcattc ctgacgcgcc acatcagcga tacagtaaaa agctgggatg
     3781 ctcgggatat gtcgcggcaa atcgagttaa atatcggcaa agatctgcag tttatccgtg
     3841 tcaacggtac gctggttggc ggttgtattg ggctaatttt atatttgttg tcgcagctcc
     3901 cggccttgtt ccccctcagc aatttttaga aatccatgaa aaactaagtg gctaaccgcg
     3961 agagagatca aataaaccac actaaaagaa tggtaataat gtggcctctt ttcattatct
     4021 cccgtggtac ggggaaggaa aatcatgtca cttatcaccg atctacccgc cattttcgat
     4081 cagttctctg aagctcgcca gaaaggcttt ctcaccgtca tggatctcaa ggagcgcggc
     4141 attccgctgg ttggcactta ctgcaccttt atgccgcaag agatcccgat ggcagccggt
     4201 gcggttgtgg tttcgctctg ttctacctct gatgaaacca ttgaagaagc ggagaaagat
     4261 ctgccgcgca acctctgccc gctgattaaa agcagctacg gcttcggcaa aaccgataaa
     4321 tgcccctact tctacttttc ggatctggtg gtcggtgaaa ccacctgcga cggcaaaaag
     4381 aaaatgtatg aatacatggc ggagtttaag cccgttcatg tgatgcagtt gccgaacagc
     4441 gttaaggacg atgcctcgcg tgcgttatgg aaagccgaga tgctgcgctt gcaaaaaacg
     4501 gtagaagaac gttttgggca cgagattagc gaagatgctc tgcgcgatgc cattgcgctg
     4561 aaaaaccgcg aacgtcgcgc actggccaat ttttatcatc ttgggcagtt aaatcctccg
     4621 gcgcttagcg gcagcgacat tctgaaagtg gtctacggcg caaccttccg gttcgataaa
     4681 gaggcgttga tcaatgaact ggatgcaatg accgcccgcg ttcgtcagca gtgggaagaa
     4741 ggccagcgac tggacccgcg tccacgcatt ttaatcaccg gctgcccgat tggcggcgca
     4801 gcagaaaaag tggtgcgggc gattgaagag aatggcggct gggttgtcgg ttatgaaaac
     4861 tgcactgggg cgaaagcgac cgagctaatg cgtggcggaa acgggcgatg tctacgacgc
     4921 gctggcggat aaatatctgg cgattggctg ctcctgtgtt tcgccgaacg atcagcgcct
     4981 gcaaatgctc agccagatgg tggaagaata tcaggtcgat ggcgtagttg atgtgatttt
     5041 gcaggcgtgc catacctacg cggtggaatc gctggcgatt aaacgtcatg tgcgtcagca
     5101 gcacaacatt ccttatatcg ctattgaaac agactactcc acctcagatg tcgggcagct
     5161 cagtacccgt gtcgcggcct ttattgagat gctgtaagga gtggcagtga catattcgat
     5221 tggcattgat tctggttcta ccgccaccaa agggatctta ctggcagacg gcgtgattac
     5281 gcgccgtttc ctcgttccaa caccctttcg tccggcaaca gcaattactg aagcctggga
     5341 aactctgcgc gaagggttag agacaacgcc gtttctgacg ctcaccggct atggacggca
     5401 actggtggat tttgccgata aacaagtgac ggaaatctcc tgtcacgggc tgggcgcacg
     5461 gtttcttgcg ccagcaacgc tgcgcggtaa tcgacatcgg tggtcaggac agcaaagtga
     5521 ttcagcttga tgatgacggt aacctgtgcg atttcctgat gaatgacaaa tgcgcggcgg
     5581 gcaccgggcg tttcctggaa gtgatctcgc gcacgcttgg caccagcgtc gagcaactcg
     5641 acagcattac cgaaaatgtc acgccgcatg ccatcacgag tatgtgcaca gtgtttgccg
     5701 aatcagaagt gatcagcctg cgctcagcgg gcgtcgcgcc agaagcgatt ctcgccggag
     5761 tgattaacgc gatggcgcgg aggagtgcca atttcattgc tcgtctctcc tgtgaagcgc
     5821 cgattctgtt tactggtggc gttagtcatt gccagacgtt tgcccggatg ctggaatctc
     5881 acctgggaat gccggtaaat acccatcctg atgcgcaatt tgctggcgca attggcgcgg
     5941 cggtaattgg tcaacgagtg aggacacgcc gatgaaagag tttttatttt tatttcactc
     6001 cacagtcggc gtcatacaaa ctcgcaaagc gttgcaggca gcgggcatga cttttcgcgt
     6061 cagcgatatt ccccgtgatt tacgcggcgg ctgcgggtta tgcatttggc tgacctgtcc
     6121 ccccggcgaa gaaatacaat gggtgatccc tgggctgact gagtcaattt attgccagca
     6181 ggatggtgtc tggcgctgca ttgcacatta ccgggtttct ccgcgttaag gattcattaa
     6241 ggtcgctacg tatacttctc gatatcttat tgatttgcct taaagggatt accgtgacaa
     6301 aaagtatttc gttaagtaaa cgcatctccg ttattgtgat tctttttgcc attgtggcag
     6361 tgtgtacttt cttcgtgcaa tcttgcgccc gtaaaagcaa tcatgcagca tcatttcaga
     6421 attaccacgc caccattgac ggcaaagaaa ttgcaggcat aacgaataat atctcttcgc
     6481 tgacctggtc ggcacaaagc aatactcttt ttagcactat caacaaacct gccgccattg
     6541 ttgaaatgac caccaatggt gattttatcc gcacaattcc tctggatttt gttaaggatc
     6601 tcgagacgat cgaatacatt ggcgataatc agtttgtcat tagcgatgag cgcgattacg
     6661 ccatttatgt gatttcactg accccaaact cggaagtaaa aatcctcaaa aaaataaaaa
     6721 tcccgctgca agactcccca accaattgcg gttttgaagg gttagcttat tctcgccagg
     6781 atcacacttt ctggtttttt aaagagaaaa atccgattga ggtctacaaa gttaacgggc
     6841 tgttaagtag caatgaatta cacatcagca aagacgaggc actacaacgg caatttactt
     6901 tagatgatgt gtccggcgca gaatttaacc agcaaaaaaa tacgcttctg gtgctgtctc
     6961 atgaatctcg cgcactccag gaagtaaccc tggttggcga ggttatcggt gaaatatcac
     7021 taaccaaagg tagtcgaggt ttgtcgcata acatcaaaca ggccgaaggg attgcgatgg
     7081 atgcctctgg taatatttat atcgttagcg aaccaaatcg tttttatcgc tttaccccta
     7141 aatcatcgca ttaacaggct ggcatatttc acctttttgt tattaacttg ttaacaacaa
     7201 aaatgacata caaggttaaa catgccttcg tcctcgcatc ccgtagaacg cttttctttc
     7261 agcaccgcgc ttttcgggat gctggttctg accctaggta tgggattagg tcgcttcctt
     7321 tatacgccta tgttgcccgt cattatggcg gaaggggcgt tttcatttag ccagctctcg
     7381 tggattgcca gcggcaacta tgcggggtat ctggctggca gtctgctatt ttcgtttggc
     7441 gcatttcacc agccgtcgcg cctacgccca tttctgttgg tttctgccct ggcgagaggg
     7501 ttgttgatcc tcgcaatggc atggttgccg ccatttattc tggtgttatt gattcgcttc
     7561 ctggcgggtg tcgccagcgc cggtatgctg atttttggtt cgacgctgat tatgcagcac
     7621 acgcgccatc cttttgtgct ggcagctttg ttttctggcg ttggcattgc actgggcaac
     7681 gaatatgttc tggcaggcct gcattttgcc ttctcctcgc aaacgttatg gcaaggcgcc
     7741 ggggcgcttt ctggcatgat gctgattgca cttacgcttt taatgccctc gaaaaaacac
     7801 gccatcgcac caatgccatt ggcaaaaacg gagcaacaga taatgagctg gtggttactg
     7861 gctattctgt acggccttgc gggatttggt tatatcatcg tcgcgactta cctgccgctc
     7921 atggcgaaag atgcaggctc accattgtta accgcccatc tctggacgtt agtcggctta
     7981 tcaattgtgc caggctgctt tggctggcta tgggcagcaa aacgttgggg ggctttgcct
     8041 tgcctgacgg cgaatttgct ggtgcaggct atcagtgtgc tgcttactct cgccagcgac
     8101 tctcctctct tgcttatcat tagtagtatc ggttttggcg gtacctttat gggcacgaca
     8161 tctctggtga tgactatcgc ccgccaactg agcgttccgg gaaatctcaa tcttttaggc
     8221 tttgtgacgc tcatttacgg cattggacaa atcctcggcc cggcgctgac cagtatgctc
     8281 ggcaatggaa catcggcgct tgccggcgcc actctctgcg gcgcggcggc gttgtttatt
     8341 gctgcgctta tcagcacagt acaattattt aagctgcaag tggtcacttc atgaggagtg
     8401 tttcccttac cactcaagaa attcgaccgc aaccgttgat gtcagccaga ctccgttttc
     8461 cgcttgccag aaaggaatgc ctcgtttcgc catttcctgt gctttgacgg ttaagacaac
     8521 cggcgatccg tgtcttgctc ccactttgcg tgccgttgct tcatcagcag agagatgcac
     8581 gtaatgacga tcccctgcaa tcagcccctg ttttttttat ctcgtcaagg aaacggcttg
     8641 ccgtaccgtg gtagagaaac tgtggcggtg ttttttcggc aaaggaaata gcgacctgcg
     8701 aagtcgaatg cccctgaacc gcgcggatgc acctaccatc actggaataa ctaaaacgct
     8761 ttttatcgct ggttgcgacc acggtatcca gcaatgcacg ggttaatcgc ttgcccgctt
     8821 tttgggcaca aagtatgagc ttatcgatat ccgcccatcc ttcacggtcc agtacgatac
     8881 caatcgcctc cggtttgtgt cggaggacaa aacttaaaaa cttgctcgta tccgccagct
     8941 ctttttcgtt gtgctttgcc atctcgtttt cgtccctgga ttttctgttt ttatttacca
     9001 atgtcattgt cactgggttt atgaattttc tgcaactcaa tcctgcgcag aaccttttcc
     9061 acacagcgta atgtttcccc tatgcaaaaa acgcatagcc agaaacatac ttgcattttc
     9121 cccataccca catggctgat aaggtttttc agttccagga attttcctgg ctcaagcaac
     9181 acacaaacac aaaaaaacaa tggggattgt tatgacacaa caaggggatg ctgtagccgg
     9241 ggagctggcg acagaaaaag tgggcattaa agggtatctg gctttttttc tcaccataat
     9301 cttttttccg gtgttttttc cggaacagac agctggtggc gcgtttttga tttttccgtt
     9361 ctgaacggat cgtttgggca actgcctggt gcgaacggag ccaccacctc atttcgcggc
     9421 gcgggtggtg cgggggctaa agatggcttt ctctttgcgc tggagctggc accgtcagtc
     9481 attctctctc tggggattat ttcaattacc gatggtcttg gtggattacg cgccgcgcag
     9541 cagttaatga cacctgtgct aaaaccgttg ttgggcattc cagggatctg ctcgctggcg
     9601 ctgatcgcta acttgcaaaa cactgatgcc gccgccggta tgaccaaaga gctggcgcag
     9661 gaaggtgaaa ttaccgaacg cgataaagtg attttcgccg catatcaaac cagcggtagc
     9721 gccatcatca ccaactactt ctcttccggc gtcgcggtgt tcgcctttct gggcacgtcc
     9781 gtaatcgtac ctttagccgt catcctggtg tttaaatttg tcggagccaa cattttgcgc
     9841 gtctggctta acttcgaaga acgtcgcaac ccaacgcaag gagcgcaagc atgacaactc
     9901 aggtccgcaa aaacgtcatg gatatgttta tcgatggcgc gcgccgtggc tttactatcg
     9961 ccacgaccaa cctgctgcca aacgtggtga tggcgtttgt catcattcag gcgctgaaaa
    10021 ttaccggcct gctcgactgg gtggggcata tctgtgaacc cgtaatggcg ctgtggggat
    10081 tacccggtga agcggcaacc gtccttttag ccgcattaat gagtatgggg ggcgcagtcg
    10141 gtgttgccgc cagtctggca accgctggcg cattaaccgg tcacgatgtc accgttttac
    10201 tgcccgcgat gtatttaatg ggcaacccgg tgcaaaatgt cggtcgctgc ctggggacag
    10261 ccgaagtgaa tgccaaatat tacccgcata tcattacggt ctgcgtgatt aacgcattgc
    10321 tgtcgatctg ggttatgcag cttattgttt aacaaggagt taccatgatt gattataccg
    10381 cagccggttt taccctgctg cagggagcgc atttgtatgc gccggaagat cggggaattt
    10441 gcgatgtcct cgtcgctaac ggcaaaatta tcgccgttgc cagcaatatc ccttctgaca
    10501 ttgtaccgaa ctgcacggtt gtcgatctca gtgggcagat cctctgccca ggttttattg
    10561 atcaacacgt ccatttgatt ggcggtggcg gcgaagcagg tcccacgacg cgcacgccgg
    10621 aagtggcgct aagtcgcctg acggaagcgg gcgtcacgtc agtggttggt ctgctgggca
    10681 ccgactctat ctctcgccac ccggaatccc tgctcgccaa gacccgtgcg ctcaatgaag
    10741 aaggcatcag cgcctggatg ctgaccggcg cttatcatgt cccttcccgc actattacgg
    10801 gttccgtgga aaaagacgtg gcgattatcg atcgtgtgat tggcgtgaaa tgcgccatct
    10861 ctgatcaccg ttctgccgca ccggacgttt atcacctggc taatatggcg gcagaatccc
    10921 gcgttggcgg tttgctcggc agtaaacctg gcgtcaccgt gttccacatg ggcgacagta
    10981 aaaaggcgtt acagcctatt tatgacctgc tggaaaactg cgatgtgccg atcagcaagc
    11041 tgctgccgac ccacgttaac cgcaacgtac cgttgtttga gcaggcgctg gagttcgcgc
    11101 gcaaaggcgg caccatcgat atcaccagca gcattgacga accggtcgcc cctgccgaag
    11161 gtattgcccg cgccgttcag gcgggtattc cgctggcacg cgtcaccctc agctccgacg
    11221 gcaacggtag ccagccgttc ttcgatgacg aagggaattt aacccatatc ggtgttgcag
    11281 gttttgaaac gttgctggaa accgtgcagg tgctggtcaa agactatgat ttcagtatca
    11341 gcgatgccct gcgcccgctc accagtagcg tagccggttt ccttaacctg agcgggaaag
    11401 gcgaaattct gcctggcaat gacgcagact tactagtcat gacgccagaa ttgcgcattg
    11461 agcaggtata tgctcgcggc aaactgatgg tcaaagacgg caaagcctgc gtgaaaggaa
    11521 cgtttgaaac ggcttaaacg gttgtcagcc gccctaatgg acgtagaatg cccgcaaggg
    11581 cggctgacag agtaaaacgt aatggatgac tgttgtgcgg ttttgcataa tattgaaacc
    11641 aaatggcttt atgattttct gaccctggaa aaatgccgca atttttccca ggcggcagtc
    11701 agtcgtaacg tctcgcaacc ggcattcagc cgccgcatcc gcgcgctgga acaggcgatt
    11761 ggcgttgaat tgtttaaccg ccaggtgacg ccgctgcaac tctcagaaca agggaaaatc
    11821 ttccattcgc agatccgcca tctgttgcaa cagttagaaa gtaaccttgc agagctgcgt
    11881 ggcggcagcg attacgcgca acgtaaaatc aagatagccg ctgcacactc tctttccctc
    11941 ggtctgttac cgtccattat cagccagatg ccgccgctct ttacctgggc gattgaagct
    12001 attgatgtcg atgaagcagt cgataaactg cgtgaagggc aaagtgactg tattttttcc
    12061 tttcacgacg aagatttgct ggaagcaccg tttgaccaca ttcgcttatt tgaatctcaa
    12121 ttgttccccg tttgcgccag tgacgaatac ggagaagcaa tttttaacct cgcgcagcca
    12181 cactttccgt tactgaatta cagccgcaac tcctacatgg ggcgattgat taatcgcacc
    12241 ctgacgcgcc acagcgagtt aagtttcagc accttttttg tctcttcgat gagcgagcta
    12301 ttaaagcagg ttgccctcga cggctgtggg attgcctggc tgccggagta tgccatccaa
    12361 caagaaattc gcagcgggca actcgttgtg ctgaatcggg acgaactggt gatcccgatt
    12421 caggcctacg cataccgtat gaatacccgc atgaatccag ttgccgaacg cttctggcgt
    12481 gaactgcgcg agctggagat tgtgcttagc tgacattctc aagcgtcgca ctgcgccaac
    12541 cgccattatc ccagaccaga tcaaacgtta gcggttcatc gtcgtggtac agcattatct
    12601 caaggctgat cgccagagtg tggcagtacg cttctttcaa attaacctgc aacgccgcaa
    12661 tccgtggctc atgaaataac agtgcagaac gcagctgacg gcaataccag ctctggagat
    12721 gtttgtcgct cgggttatgc acttgccact cgggcatgcc tgaaacaagt aatgacggta
    12781 atgccgaatg aggagaatta aaaagagtga ggagatcgct gcataccgat ttacgcagca
    12841 atgacgtttt attgcctgaa atttcaggta aaacagcctg aagtgattgg cgcatcattt
    12901 tgcgcactcc tgacgtttag caacatatgc ggcttgccct gaacaccggg caccactgta
    12961 ttgatgctca ttttccatag ccattccctt ttgttcatta catccatgtc agtctgagac
    13021 aggcctgaat cctgtcagca aagtataaaa ccttacttgc ctatgaatat ctactgactt
    13081 ttcaggaaaa aagtcatgat ttgataaaaa tcatcaaact caaaaaaaaa ccgctagtat
    13141 attctgaata ttccgaatag ttacgtagat gaaaatactt gtcaccgccg ctacttaatt
    13201 ccggtgggaa attatttatt tccgcataat cagccatgta ttatttgaaa caattagttt
    13261 gtaaataata taaattgata acatatcaaa tacatcaaaa ataccattca taggcattat
    13321 taatatagac atcaatatag caacatcaaa ttccaattag taataagata tgctttttaa
    13381 ttgcatgaaa ataatttcaa atgagcgttt tttgatactt tagagtgttt cctacccttt
    13441 aatatcaccg tgtagagttg atatcactac aacagaaaca tgcatgtcat ttttttactt
    13501 cttttttact acagaaaaat ttatctattt ttctaaacat cggtgaaata ctcataaaag
    13561 gtaactatta tgtctatgcc attaagcaat gcccttcaga gtcaaattat tacagataat
    13621 cacttccttc atcatccaaa agtcgacaat aagttaacac gtgaatatga atatacacgc
    13681 atggatacgg aaaatatcta tcttctgcct cttactcgtg gaaataacca taattacgat
    13741 ggaaaaagcg ttgtcgaaat tagaaaactt aatattggca aacagtcctg gccatttaat
    13801 tatgcgacag atacatgcag agaattcaat ggtattacaa caacaggacg tatgctctat
    13861 cgaaacttga aaatcacctc agctttagac gaaatatatg gtggcatatg taaaaaggcg
    13921 catgctgcta cagagttagc agaaggttta cggctaaatt tatttatgaa gagccctttc
    13981 gatcctgttg aggactatac agttcatgaa ataacattag gccctggtta caatgttcct
    14041 ggttatgccg gaaccacgat aggatatatt tcaacccttc cagcttctca ggcaaaaaga
    14101 tggaccaatg agcagccaag aattgatatc tatattgatc agataataac tgtctcaggg
    14161 gtggcaaatt cttccggatt cgcccttgcc gcattactta atgctaatat tggaatggga
    14221 aatgacccaa taattggtat agaagcctat cctggtaccg cggagatcca tgcaaaaatg
    14281 ggatataacg ttatccccgg tgatgaagat gcgccactca aacgcatgac tctgcaaccg
    14341 tcatctcttc cagaactgtt tgaattaaaa aatggtgaat ggaattatat tggcaaataa
    14401 ccactgagaa gaatgagtac taacattcag gttatataga tatttaaaca ataccctgca
    14461 atttacaaag taatactcat tgcgacttct taatttaaga aagcgcaagg aacgtttacc
    14521 cttgcgctta tcataatcag tcaggcgtcg actttatcca gcggccatga atcaaacaga
    14581 tagccgtcaa aataaatatc gtcaacgttc gagaattcca gcagacgttg cttaacgttt
    14641 tccagatgct gccacattgc cagcttcgcc gctcgggcat cttttttgat taacgcggca
    14701 aggatctgtt tgtgatcgcc caaccactct ttgcgataca ggctgtcatc cagatggctg
    14761 tgcaactgga tccacattgg attgttttcc cgccactgcc aggactgacg gaataactcc
    14821 accagcatgc tgttatgcgt tgcttcagca atggcgagat ggaactgcat gtcaccgctt
    14881 tcgctgctac ccggcgcgct ggaagccagt tcacgctctt ccagttgcaa tgcctgacgc
    14941 attttgacga tatcttcgcg ggtagcctgc agggcggcaa attccgcgat gttgctctca
    15001 agaagctgtc gcgcctgcaa caattcaaag gggccggcat cattgcagac gttggcatcc
    15061 ggactgtctg tgttgtggct gcctgagcta tcaagaacat agataccggc accccggcgc
    15121 acttccacca gccctttgat ctccagcatg atcagcgctt cacgtaccac cgtccgcgtg
    15181 acatcaagca tttctgcaat ttcacgctcc ggcggcagcc gttcgccagg attgtacggc
    15241 gtctttatga tcagatcgcg gatcatcgcc ccgacttcct ggtaaggtct ttgcgcagag
    15301 gtggcagatt tcatggtgtt gtgtccgtta ggtgcggtta atcaaatttt tgccggatgc
    15361 ggcgtgaacg ccttatccgg cctacaacgg gcaattttac ggcccccgtt aatctcaaac
    15421 tataccatta gcactggaag ttagcacgta caggtgggca aaaaaacgaa aactggtcaa
    15481 ccaaatatca gtttgattga ccagtaagtc tgtagggtaa tcagttagtt acagcgcagc
    15541 cacacactcg cgcgcaccgc gttcgcacag ctgctgatat gccgccgtca ccgcgccaac
    15601 aaagtcggca ttctgcggca gatcatcggc aaaaataccg ctcaggccca gcagcgcttt
    15661 cacgcggtct gcgccctgat actgcgcgtt aatcttctgg aactcggcca gcatcgggtc
    15721 gaccacgtca atggcattac cctgctcatc cacgccctgg gtgtaacgca tccagccagc
    15781 cacgcccagc gccaggtgac gccagctgcc gccattttgc aggtgcagac gcaccgggtc
    15841 cagcagacgc tgcggtaact tctggctgcc gtccatcgca atctgccagg tacggtgacg
    15901 cagagacggg ttgctgaaac gctcgatcag cagcgtcgca taggccttca ggtccgtacc
    15961 ctccggcata gacagcgttg gcgcttgttc ctgcatcatc agggcaaagg ccgctttgcg
    16021 ataatccggg ttagtcatgg tgtcggcaat agtttcatag ccgccgaggt aaccgaggta
    16081 tgccaggaaa gagtggctgc cgttcagcat acgcagcttc atcatttcga acggcacaac
    16141 gtctgcaacg aactgtgcgc ccactttatc ccagtccggg cgaccattaa cgaagttatc
    16201 ttcaatcacc cactgacgga acggttcgca ggcaatggcg cacgggtcgt aaacacccag
    16261 ctggtcagca atttcctgta aggtttctgg cgtcgccgcc ggaacgatgc ggtcaaccat
    16321 ggtgcacggg aaggtgacgt tctcttcaat ccatgccgcc agctgcgggt cacgtgcctg
    16381 agccagcccc agtaccgcga ccttcgccac atgaccgttt tcacgcacgt tatcgcagga
    16441 catcaccgta aatgctttca gccctttttc acgacgcaga cgcaaggctt cgacgatgta
    16501 accaatcgcg gacttcggcg cagtcgggtt ttctagatcg tgcttgatca gcgggttatt
    16561 gagatccagt tgaccgcttg ccgcatcagc gcagtagcct ttttccgtga ccgttagaga
    16621 gacaatcgcc gtttgcggac gcgccatcgc gttgagaata ccttcgcagc cgtcgatttc
    16681 cggatgcagc gcttctttca tcgaaccgat aattttcagc tcggtgcttt ctgcgccttt
    16741 ttccgctacg gtgtacagca gttgctgttt tttcaggttt tcgatcagca cgcggtcgtt
    16801 gcctggcatc aggttaactt cgcagatgcc ccagtcgctg tcggtgcttt ccagcagatg
    16861 atgggtatac agcgcctgat gtgcgcggtg aaacgccccg caaccgagat gcacaatgcg
    16921 tgattccaga cgagaatgat cccatgacgg acgggcaacc ggcagattgc tgtcaacaat
    16981 agtagtcatc gtaaactcca gaatccgtct tcagagagtg acggcaagga agaaggaacc
    17041 ggcacggcgc gcagccatgc cggtggatat taacggctaa agaaagcgcg ctggatcgcc
    17101 agttcgacac cgcgaacttc ggccaggcct ttcagacgac caattgcgga gtaacctggg
    17161 ttggttttct tcttcaggtc gtccagcatc tgatgaccgt ggtccggacg catcgggatc
    17221 aggtcttctt tgccttccgc tttacgacgg tgttcttctt caacaatcgc tttcaccact
    17281 tcgtacatat caacgtcacc gttcaggtgc gccgcttcgt ggaaggtttt cgggttatct
    17341 tcacgcatgg tggagcgcag atgggtgaag taaatacgcg gaccgaactg cttgatcata
    17401 tcaaccagat cgttgtcagc acgcacgccg taggaaccgg tgcacatggt gaaaccgttc
    17461 gccatgctgt ttacggtatc aaccatccac tgcatatctt caatggtgga aacaatgcgc
    17521 ggcaggccga ggatcgggcg cggcggatcg tccgggtgaa ccgccatacg cacgccaact
    17581 tcttcagcaa ctggaataat cgctttcagg aagacggcaa agttttcgcg cagcttcgct
    17641 ttatcgatat ctttgtacag ctccaggtgc ttacggaact ggtcgagggt atacccttct
    17701 tccgcgcccg gcagaccggc aatgatgtta cgcgtcagac gcgctttgtc ttcatcgctc
    17761 atagtggcga agcgttcagc tgcctgagca atttcttctt cggtgtaatc cgcttccgcg
    17821 cctggacgtt tcaggatatg catttcgaat gcagcgaatt cgatctggtc gaagcgcaga
    17881 gctttggagc cgtctggcag cacgtattcg aggtcagtac gggtccagtc gagcaccggc
    17941 atgaagttgt agcacacggt gcgaatgccg cactgcgcca ggttgcgcag agtctgctga
    18001 tagttagcga tccactgctc atagttgcca gtgtgggttt tgatatcttc gtgaattggt
    18061 acgctttcta cgacagacca caccaggcct gcgtcttcaa cgatcgcctt gcgtttgagg
    18121 atctcttcta cggaccatac ttcgccgttc gggatatggt gcagcgcggt aaccacgcca
    18181 gttgcgcccg cctgacggac atcagctaaa gaaaccagat cgtttgggcc gtaccagcgc
    18241 caggtctgtt ccatgatttt tcctctttca catagtgggt tccacagcaa agagacgcgg
    18301 aaccctggag ttgtttaggt atccggatga acaaccagac cgcagccgtg gcgttgcatc
    18361 ggatgagatg gcgtataagt tctacctttt ggtaagatat atcaacccaa atcctgaaat
    18421 tggttaacca aatcacaaga atttcactct catggttgtt gctgcaaatt gcagcaaaag
    18481 gtaatcgatg gttattgatc agaggatgtg acattcatcg caacaatggt tgaccaattt
    18541 acataacatg tcgcccaaaa taacaacggt tcaaccaggt aaggtaaaac gttatgcatg
    18601 tgcttaacat tctctgggta gtattcggca ttggtctgat gctggtactg acaacgaccg
    18661 caggttcaga cacattcact gcattagcaa tgcctcttag attattttga cctgtcagta
    18721 aaagacacgt tgaaaacctg gggtctgctg gaactggtca actccgtggt tgggctgatt
    18781 attagcaagg tagcgtaaaa gaacaccaga gcctgccaat ggcaggctct gactgatgac
    18841 aaagtctaaa aatgtgcccg gacagtcccc tcgcccctcc ggggagaggg ttagggtgag
    18901 gggaacagac cagcaaagtg cgctttgttt atgccagatg cgacgctgac gcgtcttatc
    18961 tggcctacaa agggctaacg tgcaggtttt tagcttcagg taatattgcg taactgcatt
    19021 agcaatgccc tgtgatttct ttattgataa acaaaagtca cgccaataat cgattgcaca
    19081 ttccctgcag tcacctgccc tccggtacgt gcgtaatttg ccgttaatcc cagacttacc
    19141 gccgaagttc
//
LOCUS       DADMJB010000073        19018 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.073, whole genome shotgun sequence.
ACCESSION   DADMJB010000073 DADMJB010000000
VERSION     DADMJB010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19018
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.073"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..619
                     /locus_tag="JN078_002234"
     CDS             <1..619
                     /locus_tag="JN078_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414930.3"
                     /note="member of the major facilitator superfamily (MFS)
                     of transporters; unknown function; may be associated with
                     transport or processing of arabinose polymers; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter AraJ"
                     /protein_id="HAY9041426.1"
                     /translation="REQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFS
                     ETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMFFFCGGMKTT
                     SLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAVGAYCGGMMLT
                     LGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKPLG"
     gene            complement(762..1670)
                     /gene="mak"
                     /locus_tag="JN078_002235"
     CDS             complement(762..1670)
                     /gene="mak"
                     /locus_tag="JN078_002235"
                     /EC_number="2.7.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414928.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructokinase"
                     /protein_id="HAY9041427.1"
                     /translation="MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIA
                     TLVDMAEQATGQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRL
                     ANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHISGNGTAGEWGHNPL
                     PWMDEDELRYREEVPCYCGKQGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESD
                     PVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGMSNVDRLYQTVPQLIKQFVFGGE
                     CETPVRKAKHGDSSGVRGAAWLWPQE"
     gene            1795..2706
                     /gene="rdgC"
                     /locus_tag="JN078_002236"
     CDS             1795..2706
                     /gene="rdgC"
                     /locus_tag="JN078_002236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HAY9041428.1"
                     /translation="MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMG
                     WVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKT
                     EKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGS
                     LPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEE
                     ITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFD
                     ADFILMTGELAALIQNLIEGLGGEAQR"
     gene            complement(2784..2867)
                     /locus_tag="JN078_002237"
     CDS             complement(2784..2867)
                     /locus_tag="JN078_002237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041429.1"
                     /translation="MTQRPWSKLQHKTHNIAALKIIVRRSE"
     gene            complement(2864..3205)
                     /locus_tag="JN078_002238"
                     /pseudo
     CDS             complement(2864..3205)
                     /locus_tag="JN078_002238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308469.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2773 domain-containing protein"
     gene            complement(3353..3637)
                     /gene="ppnP"
                     /locus_tag="JN078_002239"
     CDS             complement(3353..3637)
                     /gene="ppnP"
                     /locus_tag="JN078_002239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine/purine nucleoside phosphorylase"
                     /protein_id="HAY9041430.1"
                     /translation="MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEE
                     MTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL"
     gene            complement(3709..4386)
                     /locus_tag="JN078_002240"
     CDS             complement(3709..4386)
                     /locus_tag="JN078_002240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AroM family protein"
                     /protein_id="HAY9041431.1"
                     /translation="MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREE
                     VMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANI
                     SSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSL
                     GNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIAR
                     LAAELLV"
     gene            complement(4644..4835)
                     /gene="yaiA"
                     /locus_tag="JN078_002241"
     CDS             complement(4644..4835)
                     /gene="yaiA"
                     /locus_tag="JN078_002241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YaiA"
                     /protein_id="HAY9041432.1"
                     /translation="MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEH
                     PTAQEAMDAKKRYEDPDKE"
     gene            complement(4885..5409)
                     /gene="aroL"
                     /locus_tag="JN078_002242"
     CDS             complement(4885..5409)
                     /gene="aroL"
                     /locus_tag="JN078_002242"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroL"
                     /protein_id="HAY9041433.1"
                     /translation="MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMT
                     VAEIVEREEWAGFRARETAALEAVTAPSTVIATGGGIILTEFNRHFMQNNGIVVYLCA
                     PVSVLVNRLQAAPEEDLRPTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQV
                     ISEIRSALAQTINC"
     gene            complement(5592..6050)
                     /locus_tag="JN078_002243"
     CDS             complement(5592..6050)
                     /locus_tag="JN078_002243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414921.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiI/YqxD family protein"
                     /protein_id="HAY9041434.1"
                     /translation="MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRF
                     IRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAALNPRGERYTPATI
                     RERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG"
     gene            6170..6979
                     /gene="proC"
                     /locus_tag="JN078_002244"
     CDS             6170..6979
                     /gene="proC"
                     /locus_tag="JN078_002244"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HAY9041435.1"
                     /translation="MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPNKVAA
                     LHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTL
                     DQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVI
                     AEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLET
                     GEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS"
     gene            complement(6996..8111)
                     /gene="adrA"
                     /locus_tag="JN078_002245"
                     /gene_synonym="dgcC"
     CDS             complement(6996..8111)
                     /gene="adrA"
                     /locus_tag="JN078_002245"
                     /gene_synonym="dgcC"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase AdrA"
                     /protein_id="HAY9041436.1"
                     /translation="MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLP
                     RAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNL
                     KTDAVLAGMWVGVMGVNVLPSTAMLMIMCLNLMGAGGPRLFVAGLVLMVVSCLVTLEL
                     TGITVSFNSAPLEWWLSLPIIVVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGV
                     YNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQ
                     ITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRLPNTPQVTLRISVG
                     VAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA"
     gene            complement(8213..8533)
                     /gene="psiF"
                     /locus_tag="JN078_002246"
     CDS             complement(8213..8533)
                     /gene="psiF"
                     /locus_tag="JN078_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414918.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate starvation-inducible protein PsiF"
                     /protein_id="HAY9041437.1"
                     /translation="MKITLLVTLLFGLVFLTTVGAAERTLTPQQQRMTSCNQQATAQA
                     LKGDARKTYMSDCLKNSKSAPGEKSLTPQQQKMRECNNQATQQSLKGDDRNKFMSACL
                     KKAA"
     gene            complement(8652..10067)
                     /gene="phoA"
                     /locus_tag="JN078_002247"
     CDS             complement(8652..10067)
                     /gene="phoA"
                     /locus_tag="JN078_002247"
                     /EC_number="3.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414917.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase"
                     /protein_id="HAY9041438.1"
                     /translation="MKQSTIALALLPLLFTPVTKARTPEMPVLENRAAQGDITAPGGA
                     RRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPL
                     TGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKA
                     AGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLL
                     NARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNAVTEANQQKP
                     LLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSK
                     NEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKDGNTLVIVTADH
                     AHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAAN
                     VVGLTDQTDLFYTMKAALGLK"
     gene            complement(10168..10428)
                     /gene="iraP"
                     /locus_tag="JN078_002248"
     CDS             complement(10168..10428)
                     /gene="iraP"
                     /locus_tag="JN078_002248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraP"
                     /protein_id="HAY9041439.1"
                     /translation="MKNLIAELLLKLAQKEEESKELCAQVEALEIIVTAMLRNMAQND
                     QQRLIEQVEGALYEVKPDASIPDDDTELLRNYVKKLLKHPRQ"
     gene            complement(10655..10812)
                     /locus_tag="JN078_002249"
                     /pseudo
     CDS             complement(10655..10812)
                     /locus_tag="JN078_002249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439229.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            10890..11984
                     /gene="ddlA"
                     /locus_tag="JN078_002250"
     CDS             10890..11984
                     /gene="ddlA"
                     /locus_tag="JN078_002250"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HAY9041440.1"
                     /translation="MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGID
                     KQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPSKHEHQLIDAQNGQPLPTVDVI
                     FPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFIT
                     LTRANRHNISFAEVESKLRLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKV
                     IVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAP
                     EINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQA
                     SGLGYTDLITRLIELALERHAADNALKTTM"
     gene            complement(12008..12220)
                     /locus_tag="JN078_002251"
     CDS             complement(12008..12220)
                     /locus_tag="JN078_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414914.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2754 domain-containing protein"
                     /protein_id="HAY9041441.1"
                     /translation="MNLPVKIRRDWHYYAFAIGLIFILNGVVGLLGFEAKGWQTYAVG
                     LVTWVISFWLAGLIIRRRDEETENAQ"
     gene            12480..12788
                     /locus_tag="JN078_002252"
     CDS             12480..12788
                     /locus_tag="JN078_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2755 family protein"
                     /protein_id="HAY9041442.1"
                     /translation="MADFTLSKSLFSGKYRNASSTPGNIAYALFVLFCFWAGAQLLNL
                     LVHAPGVYERLMQVQETGRPRVEIGLGVGTIFGLIPFLVGCLIFAVVALWLHWRHRRQ
                     "
     gene            complement(12847..13941)
                     /gene="yaiW"
                     /locus_tag="JN078_002253"
     CDS             complement(12847..13941)
                     /gene="yaiW"
                     /locus_tag="JN078_002253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-exposed outer membrane lipoprotein YaiW"
                     /protein_id="HAY9041443.1"
                     /translation="MSRVNHLSSLSLLAVLVLAGCSSQAPQPLKKGEKAIDVASVVRQ
                     KMPASVKDRDAWAKDLATTFESQGLAPTLENVCSVLAVAQQESNYQADPAVPGLSKIA
                     WQEIDRRAERMHIPAFLVHTALKIKSPNGKSYSERLDSVRTEKQLSAIFDDLISMVPM
                     GQTLFGSLNPVRTGGPMQVSIAFAEQHTKGYPWKMDGTVRQEVFSRRGGLWFGTYHLL
                     NYPASYSAPIYRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYDSKEPGKTE
                     LATRKLAGKLGMSDSEIRRQLEKGDSFSFEETALYKKVYQLAEAKTGKSLPREMLPGI
                     QLESPKITRNLTTAWFAKRVDERRARCMKQ"
     gene            complement(13954..15174)
                     /gene="sbmA"
                     /locus_tag="JN078_002254"
     CDS             complement(13954..15174)
                     /gene="sbmA"
                     /locus_tag="JN078_002254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706191.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide antibiotic transporter SbmA"
                     /protein_id="HAY9041444.1"
                     /translation="MFKSFFPKPGAFFLSAFVWALIAVIFWQAGGGDWVARITGASGQ
                     IPISAARFWSLDFLIFYAYYIVCVGLFAFFWFIYSPHRWQYWSILGTALIIFVTWFLV
                     EVGVAVNAWYAPFYDLIQTALSSPHKVTIEQFYREVGVFLGIALIAVVISVLNNFFVS
                     HYVFRWRTAMNEYYMANWQQLRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLVA
                     FLPVLVTLSAHVPELPIIGHIPYGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVE
                     AAYRKELVYGEDDATRATPPTVRELFSAVRKNYFRLYFHYMYFNIARILYLQVDNVFG
                     LFLLFPSIVAGTITLGLMTQITNVFGQVRGAFQYLINSWTTLVELMSIYKRLRSFEHE
                     LDGDKIQEVTHTLS"
     gene            15526..16683
                     /locus_tag="JN078_002255"
     CDS             15526..16683
                     /locus_tag="JN078_002255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-12 family class D beta-lactamase AmpH"
                     /protein_id="HAY9041445.1"
                     /translation="MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFY
                     GSGATGMALVVIDGNQRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLD
                     QGTVKLNDPLSKYAPPGARVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPT
                     REQRWKYLSTAKLKAAPGSQAAYSNLAFDLLADALANASGKPYTQLFEEQITRPLGMK
                     DTTYTPSPDQCRRLMVAERGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQR
                     SNQADRMQTLIYQRAQFTKVIGMDVPGKADALGLGWVYMAPKEGRPGIIQKTGGGGGF
                     ITYMAMIPQKNIGAFVVVTRSPLTRFKNMSDGINDLVTELSGNKPLVIPAS"
     gene            complement(16684..17307)
                     /gene="iprA"
                     /locus_tag="JN078_002256"
     CDS             complement(16684..17307)
                     /gene="iprA"
                     /locus_tag="JN078_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414909.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogen peroxide resistance inhibitor IprA"
                     /protein_id="HAY9041446.1"
                     /translation="MLSVVKPLQEFGKLDKCLSRYGTRFEFNNEKQVIFSSDVNSEDT
                     FFILEGVISLRREENVLIGITQASYIMGLADGLMKNDIPYKLISEGNCTGYHLPAKQT
                     ITLIEQNQLWRDAFYWLAWKNRILELRDVQLIGHNSYEQIRATLLSMIDWNEELRSRI
                     GVMNYIHQRTRISRSVVAEVLAALRKGGYIEMNKGKLVAINCLPSEY"
     gene            complement(17395..>19018)
                     /locus_tag="JN078_002257"
     CDS             complement(17395..>19018)
                     /locus_tag="JN078_002257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000556401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HAY9041447.1"
                     /translation="NNGSQVNVTDSSLVSDTIGLTNGSSLNIGANGVVATDHLTVDSY
                     STVNLTESTGWNNYSNLYTNTITVTNGGVLDVNVDQFDTEAFRTDKLELTSGNIADHN
                     GNVISGVFDINSSDYVLNADLVNDRTWDTSKSNYGYGIVAMNSDGHLTINGNGDVDNG
                     TELDNSSVDNVVAATGNYKVRIDNATGAGTIADYKDKELIRVNDANTNATFSAANKAD
                     LGAYTYQAEQRGNTVVLQQMELTDYANMALSIPSANTNIWNLEQDTVGTRLTNSRHGL
                     ADNGGAWVSYFGGNFNGDNGTINYDQDVNGIMVGVDTKIDGNNAKWIVGAAAGFAKGD
                     MNDRSGQVDQDSQTAYIYSSAHFANNVFVDGSLSYSHFNNDLSATMSNGTYVDGSTNS
                     DAWGFGLKAGYDFKLGDAGYETPYGSVSGLFQSGDDYQLSNDMKVDGQSYDSMRYELG
                     VDAGYTFTYSEDQALTPYFKLAYVYDDSNNDNDVNGDSIDNGTEGSAVRVGLGTQFSF
                     TKNFSAYTDANYLGGGDVDQDWSANVGVKYTW"
BASE COUNT         4717 a         4906 c         4566 g         4829 t
ORIGIN      
        1 gcgcgaacaa tttcactttt tgcgcagccc ggccccgtgg ttaattttcg ccgccaccat
       61 gtttggcaac gcaggtgtgt ttgcctggtt cagctacgta aagccataca tgatgtttat
      121 ttccggtttt tcggaaacgg cgatgacctt tattatgatg ttagttgggc tagggatggt
      181 gctgggaaat atgctaagtg gcaggatttc aggacgttat tcaccactgc gcattgcagc
      241 agtgactgac tttataattg tactggcact gctgatgttc tttttctgcg gcggcatgaa
      301 aacaacgtcg cttatttttg cttttatttg ttgcgcggga ttatttgccc tttcagcacc
      361 gctacaaata ttgttactac aaaacgccaa aggcggagag ttattaggtg ccgcaggtgg
      421 gcaaatagcg tttaacctcg gtagcgccgt cggcgcatat tgcggtggta tgatgctgac
      481 gctggggctg gcatataatt acgtggcgct gcctgccgcc ctgctttcgt ttgctgcgat
      541 gtcgtcgttg ctgctgtatg gtcgctataa gcgccagcaa gcggcggata ctccggtgct
      601 ggcgaaacca ctggggtagg ttatagtctc ggtgttcatt acttattgcc ggatgcggcg
      661 tgaacgcctt atccgcccta cgcggttctg gcacattttg caggcctgat aagacgcggc
      721 aagcgtcgca tcaggcatga tgcgccaatt gcctacgttt tttactcttg tggccataac
      781 cacgcagcgc cgcgtacgcc gctggaatca ccgtgcttcg ccttacgcac cggcgtttca
      841 cattcgccgc cgaagacaaa ttgtttaatc aactgcggaa ccgtttgata taaacggtct
      901 acattgctca tccccccccc caggacaatc acatccggat cgagaatatt cacgacatgt
      961 gccagcgatt ttgccagccg cagctcgtag cgacgcaatg ccagttccgc taccggatcg
     1021 ctttcttcaa ccaggcggat aatttcactg cctttcagcg catgtccgct caaacgacga
     1081 taatccatcg cgaatcccgt gcccgaaata aaggtttcaa tacaaccttg tttaccgcaa
     1141 taacaaggga cttcctcgcg ataacgcagt tcgtcttcgt ccatccacgg tagcggattg
     1201 tgtccccact cacctgccgt gccattgccg ctgatatgcg cccgcccatt gaatgccacg
     1261 cccgcgccgc atcccgtgcc gataatcacg gcaaataccg tctgcgctcc cgctgccgcg
     1321 ccatctactg cttctgaaac cgccagacag ttagcgtcat ttgccagccg cacttcccgc
     1381 tgcaacctcg cgcttaagtc tttatcgaat ggctgaccgt tgagccaggt tgaattggca
     1441 ttcttcacca caccggtgta aggcgaaatt gagccaggaa tgcccatacc taccgttccg
     1501 cgctgccccg tcgcctgctc cgccatatca accaacgtgg cgatcgtttc aatagtctgc
     1561 cggtaatcat cacgcggcgt gggcagacga tggcggtaca actgctcccc tgcatcgccc
     1621 agtgcaatca cttcagtttt ggtgccgcct aaatcgatac ctatacgcac ggtactctcc
     1681 ttattttttt caatatcaat agcgtagaga cggacaaccg gattggcaat gcaaggccgc
     1741 cgacaattcg ttatcatgcc cgctaaattt aacaacaagg ccgtggaaat tatcatgctg
     1801 tggttcaaaa atttaatggt ttaccgtctt agccgcgaga tttcgctgcg tgcagaagag
     1861 atggaaaaac agctagcctc gatggcattt accccatgcg gcagccagga catggcgaag
     1921 atgggctggg ttcctccgat gggatcgcac agcgatgcgt taacgcacgt tgccaatggt
     1981 caaattgtta tctgcgcgcg caaagaagaa aaaatcctcc cgtctccggt gattaagcag
     2041 gcgctggaag cgaaaatcgc caaactggaa gcggaacagg cgcgtaagct gaagaaaacc
     2101 gaaaaagatt cgctgaaaga cgaagtgctg cactctctgt tgccgcgtgc tttcagccgt
     2161 tttagccaga caatgatgtg gatcgacacg gttaacggtt tgattatggt ggactgcgcc
     2221 agtgccaaaa aagcggaaga tacgctggca ctgctgcgta aaagcctggg gtcgttacct
     2281 gtggtaccat tgagcatgga aaacccgatt gaactgacgc tgaccgaatg ggttcgctcc
     2341 ggtagcgcgg cacagggctt ccagctgctt gatgaagccg agctgaaatc gttgctggaa
     2401 gatggcggcg tgatccgcgc gaagaaacaa gatctgacca gcgaagagat caccaatcac
     2461 atcgaagccg gaaaagtggt gactaaactg gcgctcgact ggcagcagcg cattcagttt
     2521 gtgatgtgcg acgatggttc gctcaagcgt ctgaagtttt gcgacgagct gcgcgatcaa
     2581 aacgaagata tcgaccgtga agatttcgcc cagcgttttg atgccgattt catcctgatg
     2641 actggtgaac tggcagcgtt aattcaaaac ctgattgaag gattaggtgg cgaagcacaa
     2701 cgttaattgc tgattttcct ttaatgccgg atgcgacgcc tgccgcgtct tatccggcgt
     2761 acgaagccac accagggata taattattcg ctacggcgga caataatttt tagcgcagca
     2821 atattatgcg ttttatgctg taacttgctc catggacgtt gtgtcattgt ttttcctcaa
     2881 gccagtgacg cgcttcactg cgaattttcc gcattgcccc ggttttcact aaatcccgta
     2941 acagcgaaag atcgggttgt tcgacaaata agagtaatga tggatcctct tttaaccacg
     3001 tcgttttcac atcggcagcg agctgtggat tattcatagc tagcgaccga tgccgagact
     3061 cggtcaatgt cgttaacaac gacgccgggg tatgtgcgtt gcgtaatgcc gtttggcgca
     3121 aatgatcatt gcgactttgc agcaatgcac gccaccattc atcatctgat ttatctttta
     3181 tcgtagccag ttccgcaaca atatctggag atcttcactg atatttatat caaccttgat
     3241 gaattatgaa tatatcggaa attgaaaaaa tcgcagcaaa ggaaatatta ttatgggtta
     3301 aagagaggat atttcagaaa aatgccctcc cgttcaaggg gaaggcgagg aattacagat
     3361 agcggcacag ataagaggtg ggttcggcaa cttgcagatg aaactcactg tgaccgggaa
     3421 cattaaacac cgaaccggct tcatacacct gccagtcggt cgcatcaggc agtaacacat
     3481 tcagcgcgcc actgattacc gtcatctctt ccggctcagc ggtgctgaag gtgtattcgc
     3541 cttcaaccat aacacccacg ctggcgcgac cagtgctgct gctggaaaag ccgattgatt
     3601 tcactttgcc ggaaaagtac tcattacttt gaagcataaa ctggccctgt ctggtagttg
     3661 aacatctact tcactatagg ggccagaggc gctggctgtc acgcaaaatt acaccagtaa
     3721 ttccgcagcc agccgtgcaa tcaatacgtt agacagcaag acaggaacat cgagctgttt
     3781 ttgcagtaaa tcgcgatgac gttggtgaaa tcctaaacaa tccagcatga tgacatcagc
     3841 cccttttgcc agtaattctt tccctgcatc aatgattttt tgttctgaat catgaatggg
     3901 gttacccaat gaaaataccg gcgatttctg caaaatttgc catttttgcg cctgaacggg
     3961 cagcatctcc tcaaccggaa cgataacccc cacctgatga tcttcaacaa tagaggaaac
     4021 cagtggaggc aatattcgcg acggctcaag aaagatcgta ttacgcgcag tcatactact
     4081 aatgtttgct gtactcatta ataaaatgac gtcataaccc tgattatcga gcacttcaac
     4141 cacaccttgc aggtctcgct ccactttacg acgcgaaaca tgggccagct ggttgtcatt
     4201 taataatgtg agaatggtgt cttcgcctgc ttctggcgcg tactccgcca tcacttcttc
     4261 acgacttaac ttccccagca ggctatgatg ggaaatatta tcttcgtcaa tgtattccgt
     4321 caggagcggc aaaacctcct gcataggtac aatgccgatg gtcaggatcg ccaacgacgc
     4381 actcattgtt catccacctt acttttcttt cgtcgttaat taccgggcaa gtgtgaagca
     4441 ccactgctga cacttacttg tgctacaaat gacaaaaagc gtagcagcag acgtgcacgg
     4501 cataatgtaa agattccaaa tgattccagt aatggattgt tattgtttaa tattctaatt
     4561 attagaaaaa catgaattat gaaaaatgtg acgcagatcc cttgtagtgg cactcagaat
     4621 cccttccgag cagtctgatg cggtcactct ttgtcagggt cctcatagcg ttttttcgca
     4681 tccatcgctt cctgagcggt cggatgttca ctgatcaacg agtctggttt aggatgatcg
     4741 gctctgagtt ggtaccaggt taccgtctgt cctggctttc ctttttcaat cgtcactata
     4801 tatgcttcac gaggataagg cggtttcgtt ggcatcgttc ttccttattt cacggaatga
     4861 acgttaagta taggcgctct aaaatcaaca attgatcgtc tgtgccaggg cgctacgaat
     4921 ttcagaaatc acctggctgg gttcgtttgt tgcgtcgatg ataatatgcg caacttcgcg
     4981 atatagcgca tcgcgttctt ccagcacttc ctgaacttct tcgctcagcg gttttcccgt
     5041 taaggttggc cgtaaatctt cttccggtgc agcttgcagt cggttaacca ggactgatac
     5101 tggcgcacac aaataaacca cgatcccgtt attttgcatg aagtgacgat taaattccgt
     5161 cagaataatg ccgccgcctg tagcgataac tgtggatggc gcagttaccg cttccagcgc
     5221 cgccgtttct ctggcgcgaa atcccgccca ctcttccctt tcgacgatct ccgcgaccgt
     5281 catattgagc tgtgattgca accactgatc ggtatcgaca aaccgacggt taagcgaatc
     5341 ggcaagggcc attccgaccg ttgttttacc acagccccga ggcccgatca gaaaaagagg
     5401 ttgtgtcatc gtgggttttc cccaataggt cgcaatgcgg cgaaagccgg tgtcatgaga
     5461 atagcgatca ttccatcaaa ctagtacaat ttcgattgta aagaaaaaat tccacttaaa
     5521 gtgaaaatct caatacatcc cttactatac caataaatat tcaagaatga agtgtaaata
     5581 ataaattaca tttagccacg actacgttgc acttccagcc accacttctc cagctccgcg
     5641 gcaaaggcct ggcggtcacg ttgtgaaagg ctatctggtc cgccggtctg gatcccactg
     5701 gcacgtaagg tatccataaa atcgcgcatc gtcaggcgct cacgaatggt cgctggcgtg
     5761 taacgttcgc cgcgcggatt aagcgccgct gcgcctttct cgatggcttc agcagccaaa
     5821 ggtatatctg cggtgatcac caaatcgccc gcttcacact gccggacaat ttcgttatcg
     5881 gcaacgtcga aacctgccgc gacgcgcagc gtacgaataa atcgcgatgg cggcacgcgt
     5941 aaactctggt ttgctaccag taccagcggc atctgcatac gttccgccgc gcgatacaaa
     6001 atctctttaa ttacattggg acacgcgtca gcatccaccc aaattgtcat aaagtcatcc
     6061 tttgttgggt aatcctctat tgtgtcgcgc ttttgccttc cggcatagtt ctgtttatgc
     6121 ttctgccagc gattatcaaa acaatgaatt tcacggcagg agtgaggcaa tggaaaagaa
     6181 aatcggtttt attggctgcg gcaatatggg aaaagccatt ctcggcggtc tgattgccag
     6241 cggtcaggtg cttccagggc aaatctgggt atacaccccc tccccgaata aagtcgccgc
     6301 cctgcatgac cagttcggca tcaacgccgc agaatcggcg caagaagtgg cgcaaatcgc
     6361 cgacatcatt tttgctgccg ttaaacctgg catcatgatt aaagtgctta gcgaaatcac
     6421 ctccagcctg aataaagact ctctggtcgt ttctattgct gcaggtgtca cgctcgacca
     6481 gcttgcccgc gcgctgggcc atgaccggaa aattatccgc gccatgccga acactcccgc
     6541 gctggttaat gccgggatga cctccgtaac gccaaacgcg ctggtaaccc cagaagatac
     6601 cgctgatgtg ctgaatattt tccgctgctt tggcgaagcg gaagtaattg ctgagccgat
     6661 gatccacccg gtagtcggtg tgagcggttc ttcgccagcc tacgtattta tgtttatcga
     6721 agcgatggcc gacgccgccg tgctgggcgg gatgccacgc gcccaggcgt ataaatttgc
     6781 cgctcaggcg gtaatgggtt ccgcaaaaat ggtgctggaa acgggagaac atccgggggc
     6841 actgaaagat atggtctgct caccgggagg caccaccatt gaagcggtac gcgtactgga
     6901 agagaaaggc ttccgtgccg cagtgatcga agcgatgacg aagtgtatgg aaaaatcaga
     6961 aaaactcagc aaatcctgat gactttcgcc tgacgtcagg ccgccacttc ggtgcggtta
     7021 cgtccggctt tctttgcttt gtaaagcgcc aaatctgccg atttcaacca ctcacgatag
     7081 tgactcattt gtgggttcag cggcgcaacc cccacactaa tccgtaaagt tacctgtggc
     7141 gtattcggca agcgtaacgt gtttagccct tcacgcaccc gtaacatggc ggtaatggcg
     7201 ctctcagctg gcgtaccgga catgattact gcaaactcat cgccgccaaa ccgaccaatc
     7261 acatcgctac cgcgcagggt aatttgtaac tgtcgggtaa gcgccacaat cgcttcatcg
     7321 cccacatcat gaccccaggt atcgttgatg ctcttgaaat ggtcgatatc gataatcagt
     7381 aacgttgcat cgcgattatg ccgccgacag ttatcaaatt cattgcgtaa catagtttcc
     7441 caatgacgtc ggttatacac gcccgtcatg ccgtcgcggg tactcatgac ctgcaacctg
     7501 cgtttatgtt ccgccagttt ggttgccgtc tggtagctga cccagccaaa cagcagagga
     7561 taaacgacaa taatgggaag ggagagccac cattccagcg gcgcactatt gaacgacacg
     7621 gtaatgcccg taagctcgag ggtgacaagg caggaaacca ccatcaacac cagacccgcg
     7681 acaaacagac gggggccgcc tgcccccatc aaattcagac acataatcat caacatagcg
     7741 gtggaaggca gcacgtttac gcccattacg cctacccaca ttcccgctaa tactgcatcg
     7801 gtttttaagt tgtaaatttc ccggctaagc ggatcgacgg ccctgctcgc tatctgccag
     7861 gctaaatgcg gccagacgaa cgcccagccg accaacacta gccaccacca gcccggcggc
     7921 gggtgcgaaa ccagcgttga agcaatcggt aagaacatgc cagccaggcc aaccgcacgg
     7981 ggtagtctga cgcgacgggc gaagcgcagc ccggaccgct gatgttcgtt ttgaggagtt
     8041 aaaggaggtt cctccccatg cgccgccgct tttttgaaaa agttttcatc attcattatt
     8101 tttgggaaca ttcagaaaca attttcccaa attatagaga cggggctaaa ggcagaagta
     8161 tgaaatttcg ggtgagccac tttcgtagct cacccgttag cactatcagg tatcaggcgg
     8221 ctttcttgag gcaggcactc ataaacttat tacgatcatc acctttcaga gattgttgcg
     8281 ttgcttgatt attacattcg cgcatctttt gctgctgtgg cgtcaaactt ttttcaccag
     8341 gcgcagactt gctgttcttc aggcaatcac tcatgtaggt cttacgagca tcccctttca
     8401 acgcctgcgc cgtcgcctgc tgattacagg aggtcatacg ctgttgttgt ggggttaacg
     8461 ttctctcggc agcgccgact gtggttaaaa aaaccagacc gaaaagcaag gtaaccagta
     8521 atgtaatttt catagcacca tccctcttca tgttttaacc atgagcgtat gcgcccgaga
     8581 tttgccatta agtctggttg ctaacagcaa aaaaaccacc cggcagcgaa aattcactgc
     8641 cgggcgcggt tttatttcag ccccagggcg gctttcatgg tgtagaagag atcggtctgg
     8701 tcggtcagtc caacgacatt ggcggcatgc gggccatacg ccgcaatacg caactgactg
     8761 ccggtatgtt cttgtgaatc ctcttcggag ttcccgtagc tcatcaccat cactgcgcca
     8821 tctttggtat ttagcgcctg ggtgaggccc ggagctttgg tatccggcgc gacaatctgg
     8881 ctggcgtggg cgtgatcagc ggtgactatg accagcgtgt tgccatcctt tttagcgaat
     8941 tccagcgccc gttgtacggc ttcatcgaga tcgaccgtct cgccaatttg cccacaagga
     9001 ttcgcagcgt gatcctgttt atcgattgac gcaccttcaa cttgcaggaa aaatcctttc
     9061 tcatttttac tcaacaattc aatggctttg tcggtcatct gcgccagggt tggtacactg
     9121 tcattacgtt gcggattagg cgtacaggtg actgcgggct tatcgatatt gccgtggtac
     9181 gttgctttcg gtcctagcca gcgcactggc atattgccgt cagcaaacag tccaagcaga
     9241 ggtttttgct gattcgcttc cgtcaccgca tttagcgagg cggcatcgct gaccaactga
     9301 taaccacgcg cctgtgcctg ttcacgcagc gtttttccct gccattcacc ggcggttgcc
     9361 gtttcagcaa aggtttttgc gccaccgcca agcgtaacgt cggcacgagc attaagcagc
     9421 tgttcggtaa tcgatccttt tccgcctttt tccagagcgt tacccggaca tttttcactg
     9481 gtcgcgctcg gaccgtagca tttgcgcgaa gtcacatgtg ccaccagcgc agcgggcgtg
     9541 gcatcctgca actctgcggt agaaacgtta ccggtcgcca gacctgcggc ttttgccatt
     9601 tccagaatcg ttgggtgatc tttttcgtga atatcgacgc ccagcgcgcc gttataggtt
     9661 ttgacaccgg ttgaccaggc ggttgctgat gcagccgaat cggtgacgta gtccggtttg
     9721 ccggtttttt tattcagcgc atagtgagtg tattgcccgg taagcggtaa ggcatcgata
     9781 cctttaaaaa agccgcccgc accttcggca taattacgtg cggctgtaat ttccgaatcc
     9841 cccatcccat cgccaatcag caaaataata ttttttgcag gtttatcgct aagagaatca
     9901 cgcagagcgg cagtctgatc acccgttaaa cggcgagcac cgccgggtgc agtaatatcg
     9961 ccctgagcag cccggttttc cagaacaggc atttctggtg tccgggcttt tgtcacaggg
    10021 gtaaacagta acggtaagag tgccagtgca atagtgcttt gtttcacttt attttctcca
    10081 tgtacaaata cattaaaaaa taaaaacaaa gcgactataa gtctcggccg tgacaacttt
    10141 atgacagctg ttgaaaagat taacttttta ctgacgagga tgcttcaata acttctttac
    10201 ataattgcgc agcagctccg tatcgtcgtc aggaatgctg gcatcaggct ttacctcgta
    10261 aagagccccc tccacctgtt caatcaagcg ctgttggtca ttttgtgcca tattgcgaag
    10321 cattgcagtg acgataatct ccaaagcttc tacctgcgcg cacagttctt tcgactcttc
    10381 ttctttttgg gcaagcttta ataacaactc agcaatgaga tttttcatgt ctgtatttcc
    10441 ttatccaacg tatggagaag ttaacattat gtttcacaac ttcatagtgt ctggaagtat
    10501 tatttttatg acaaaggaaa tactttgcgc aaatgttctt tgtttgatta ccagcgaaac
    10561 gtttctcata tttaaataat taaccacaca aagaacatgc ctttaattat caacctttat
    10621 tataaacaaa agttatgaaa tatattctct gcgtttactt acaactaaga gaaaaaactc
    10681 accgcatggc catttaagcc aggaataaat tagcttcccg ttcatcattt ttgtgatctc
    10741 gcgcacatct ttgtaataac gcactttctt caccattacg ttgcacgctt tgtcagcaga
    10801 agattgcaac attctgtcag aaggccgcga atcccccgtt ttgtcgtggt aatgtatgca
    10861 ctttgtgtta gacgggatag gtttttaaga tggaaaaact gcgggtagga atcgtttttg
    10921 gtggtaaatc agcggaacat gaagtgtctc tgcaatcggc aaaaaacatt gtcgatgcca
    10981 ttgataaaag tcgcttcgac gttgtgctgc tgggcattga taaacaaggg caatggcacg
    11041 tcagcgatgc cagcaattat ctgctaaatg cagacgatcc tgcccatatt gcgttgcgcc
    11101 cttcggcgac tagccttgcg caggtgccaa gtaaacatga gcatcagctt atcgacgcgc
    11161 aaaacggtca gccgttaccg acggtggatg tcattttccc gattgtccac ggtacgctgg
    11221 gcgaagatgg ttccttgcag ggaatgctgc gggtcgccaa tttaccgttt gtaggttctg
    11281 atgttctggc ttcagcagcc tgtatggata aagatgttac caaacgtctg ctgcgcgatg
    11341 ccgggctgaa cattgcgcca tttattaccc tgacgcgcgc caatcgtcac aacattagtt
    11401 ttgccgaagt ggagtctaaa ctgaggttac cactgtttgt aaaaccggct aatcagggct
    11461 cttctgttgg tgtcagcaaa gtaaccagtg aagaacagta cgcaattgcc gtcgatctgg
    11521 cgttcgaatt cgatcataaa gtgatcgttg agcaagggat caaaggtcgt gagatcgaat
    11581 gcgcagttct gggcaacgac aacccgcaag ccagcacctg tggcgagatc gtactcacca
    11641 gcgacttcta tgcctacgac accaagtaca ttgacgaaga tggcgcgaaa gtggtagttc
    11701 cggcagccat tgcgccagaa atcaacgata agatccgggc gattgccgtt caggcttatc
    11761 aaacgttggg atgcgcaggc atggcgcgtg tagacgtgtt tttaacccca gagaacgaag
    11821 tggtgatcaa cgagatcaac acactgcctg gcttcaccaa catcagtatg tatccgaagc
    11881 tgtggcaagc cagcggtctg ggttacaccg atctgatcac acgtttgatt gagctggcgc
    11941 tggagcgtca cgctgcggat aacgcattga aaaccacaat gtaatatttt aacgcccgat
    12001 aatattctta ttgggcgttt tcagtttctt catcgcgacg acgaataatc aaccccgcca
    12061 gccagaaact aatcacccac gtcaccagac cgacggcata ggtctgccaa ccttttgctt
    12121 caaatcccag taaccccacc acgccattaa gaatgaatat aaggccaatg gcgaacgcat
    12181 agtagtgcca gtcacggcgg atttttacag gcagattcat ggcagctccg ttaacgaaaa
    12241 acaacatcct tgcatattct gtaacaaccg tctgtggtgt agacaacatt ttcgtaattg
    12301 ttaataaatt taacttaagg ttgccatttt gtgactcaca acgaagattc acgcttcggg
    12361 aatattccca acatcaattt accatgattc tgatattgac aatctaaatg acctgtcaga
    12421 cttgccataa gccgctggta tcacaccaga agagaagcag atgacttccg gaggttttta
    12481 tggctgattt caccctgtca aaatcgctgt ttagcggaaa atatcgcaat gcctcttcaa
    12541 cgcctggcaa cattgcctat gcgttgtttg tgctgttttg cttttgggct ggggcgcaat
    12601 tgctgaacct gttagtgcat gcgcccggcg tctatgagcg tttaatgcag gtccaggaaa
    12661 caggtcgccc acgggtggaa attggtttag gtgtcggcac cattttcggg ctgatcccgt
    12721 ttttagtagg ctgcctcatt tttgcagtgg tggcgctatg gctgcactgg cgacatcgcc
    12781 gccagtaaga tttacgttgc cagatacggc ctaaaacgcc ttatctggca tgacattcct
    12841 gtttgatcac tgtttcatac aacgcgcccg ccgttcgtct acgcgcttcg caaaccaggc
    12901 cgtagtcagg ttgcgggtga ttttcgggct ttccagttga atgccaggca acatttcgcg
    12961 gggtagtgat ttacccgttt tcgcttcggc aagttgataa actttcttgt acagcgccgt
    13021 ctcctcaaaa gagaagctgt cacctttctc taactgacgg cgaatttcgc tgtcgctcat
    13081 ccccagtttt cccgccagtt tgcgcgttgc cagttcggtt ttcccgggtt ctttactgtc
    13141 gtaacgaatt aaatcaccgt ccagtgccag cttcacgccg ctggccttac tgaccgcgtt
    13201 ctgaaacgcg gcattacggc tggcgtacca gccagcgtta aaatcagcaa agcggtatat
    13261 cggtgcgcta tagctggcgg gataattcag taaatggtaa gtaccaaacc acaacccgcc
    13321 gcggcgactg aagacttcct gacgaactgt accgtccatt ttccacggat accctttggt
    13381 atgctgttcg gcaaaagcaa tgctgacctg catcggccca ccggtgcgca ccggattaag
    13441 cgaaccaaac agcgtctgcc ccattggtac catgctgatc agatcgtcaa aaatcgcgct
    13501 caattgcttt tctgtacgca ccgaatctaa ccgttcgcta taacttttgc cgtttggcga
    13561 tttgattttt agcgcggtat gaaccagaaa agcaggaatg tgcatccgtt cagcacgacg
    13621 gtcaatctct tgccaggcga tcttgcttaa gcccggaacg gccggatctg cctgataatt
    13681 tgactcctgc tgcgccaccg ccagcaccga gcagacgttt tccagcgtcg gtgccagccc
    13741 ctgactttca aaggtggtgg cgagatcttt cgcccaggca tcgcggtctt tcacgctcgc
    13801 aggcatcttc tgccgcacga cgctcgctac atctatcgct ttttcgccct ttttcaacgg
    13861 ttgcggagcc tgactactac accccgctaa aaccagaacc gccaacaatg acagcgaaga
    13921 tagatgattg acgcgcgaca ttacttctcc tttttagctc aaggtatggg ttacttcctg
    13981 aattttgtca ccatccagct catgttcaaa gctgcgcaga cgtttgtaga tagacatcaa
    14041 ctcaaccagt gtggtccatg agttaatcag gtactggaaa gcaccgcgaa cctgaccaaa
    14101 aacgttggta atctgcgtca tcaggccgag cgtaatcgta ccggcaacaa ttgacggaaa
    14161 cagcaagaac aaaccgaaaa cgttatcgac ctgcaaatag agaatgcggg cgatgttgaa
    14221 atacatatag tgaaaataga ggcgaaaata gtttttccgt acggcgctaa acagctcgcg
    14281 taccgtaggc ggcgtcgcgc gcgtggcatc gtcttcacca taaaccagct ctttacggta
    14341 ggcggcctct actcgctggt ttttaaactc cagccccggc agtttgatcc ctaccactgc
    14401 cagcaatccg gtccccatca gcgaccagac gatagcggca atcaccagac catacggaat
    14461 gtgcccgata atcggcagct ccggcacatg cgcggagagc gttaccagca ccggcaggaa
    14521 ggcgaccaac gtcatgatgg cgttgataaa actgacgccc atattctcca gcgttgaagc
    14581 aaaacgcatg gtgtcttcct gcacacgctg tgcggcacct tcgatatgac gcagttgttg
    14641 ccagttcgcc atgtaatatt cgttcatcgc cgtacgccag cggaacacat agtgactgac
    14701 aaagaagttg ttcagtacac tgatcaccac cgcgatcagc gcaatcccca gaaagacgcc
    14761 cacttcgcgg taaaattgtt cgatagtgac tttatgcggc gaacttagcg cggtttgaat
    14821 cagatcatag aacggtgcat accaggcgtt gacggcgact ccgacttcca ccaaaaacca
    14881 ggtgacgaag atgatcagtg cagtaccgag tattgaccag tattgccaac ggtgcgggct
    14941 gtagataaac cagaaaaatg caaaaagtcc tacgcaaaca atgtagtaag cgtaaaaaat
    15001 caggaaatcc aacgaccaga aacgcgcggc gctaatcggg atctgcccgg aagcgccggt
    15061 gatacgcgcc acccagtctc ccccaccggc ttgccagaag ataacggcaa tcaatgccca
    15121 aacaaaggcc gagagaaaaa acgctcccgg ctttgggaaa aaagacttaa acatatgcac
    15181 tcctgctaac ttcttatcgt tttaacaact gctgtgtatt aaccgcatga ccactacaaa
    15241 gcgtcagcca aatgaaaccg cccattgtga cccatagcaa ggcgcttagt tcgccagcct
    15301 gaccataaga attgtttcga cggatttcac aaaccaaaga ttgtttacat aagcggatta
    15361 acacgcgcag gatcacaaat gcaggcattg gtgagcagga aaaagatcgt gtttacgcgc
    15421 cgttacgttt ttaacactat tattgcacta attcgccctt tgcaatccat caatgagtag
    15481 tataaatacg ctcagttacc ttcattcaat ctatggacac caccgttgaa acgtagtctg
    15541 cttttttctg ccgtgctgtg tgcggcgtca ttgacctccg tccatgcggc gcagccgatc
    15601 actgaaccgg agtttgcctc tgatattgtc gatcgttatg ccgatcatat tttttacggc
    15661 agcggtgcca cggggatggc gctggttgtt atcgacggta accagcgcgt ctttcgcagt
    15721 tatggcgaaa cgcgacctgg taataacgtt cgcccgcagc tggattcggt cgtgcgtatt
    15781 gcttccctca ccaagctaat gaccagtgaa atgctggtga aattgctcga ccaggggacc
    15841 gtgaagttaa acgatccgct aagtaaatat gctccgccag gcgcacgcgt gccaacctac
    15901 aatgggacgc ccattaccct agtgaatctg gcaacccata ccagcgccct gccccgtgaa
    15961 cagcccggtg gcgcggcaca tcgtccggtg tttgtctggc caacgcgcga gcaacgctgg
    16021 aaataccttt ctacggcgaa gctgaaagcc gcgccaggca gtcaggcggc gtactctaac
    16081 cttgcgttcg acctgctggc agatgcactg gcgaatgcgt ccggcaagcc ttatacccag
    16141 ttgtttgaag agcagattac ccgtccattg gggatgaaag acaccaccta caccccctca
    16201 ccggatcagt gccgccgttt aatggttgct gagcgcggtg ccagtccgtg caataacacg
    16261 ctggcggcaa ttggcagcgg cggcgtctat tccacgcctg gcgatatgat gcgctggatg
    16321 cagcagtatt tatcatctga tttttatcag cgcagtaacc aggcagatcg catgcagacg
    16381 ttgatttatc agcgcgcgca gtttaccaaa gtgattggca tggatgtccc cggcaaagcg
    16441 gatgcgcttg gtttaggctg ggtatatatg gccccgaaag agggtcgtcc ggggattatt
    16501 cagaagacag gcggtggtgg cggtttcatt acctatatgg cgatgatccc gcagaagaat
    16561 attggcgcgt ttgtggtggt cactcgttcg ccgttgacgc gctttaaaaa tatgagcgat
    16621 ggcatcaatg atctggtgac cgagctaagc gggaataaac cgttggttat ccctgcatcc
    16681 tgattaatac tctgaaggca aacagttgat agcgaccagt ttgcctttat tcatttcgat
    16741 atagccgcct ttacgcaaag cagcgagaac ttctgcgacg acagaacgcg atatgcgtgt
    16801 acgttgatgg atataattca tcacaccaat acgtgatcgc aattcttcat tccagtcaat
    16861 cattgataat aatgttgcgc ggatttgttc gtaggaatta tgcccaatga gctgcacgtc
    16921 gcgtaattcc agaattctat ttttccaggc taaccagtaa aaagcgtctc gccagagttg
    16981 attttgttca ataagcgtaa tggtttgttt ggctggtaga tgatatcccg tacaatttcc
    17041 ttctgatatt aatttgtatg gtatatcgtt tttcattaaa ccatcagcca gccccataat
    17101 ataagaagcc tgggtaatac cgataagtac gttttcttct ctacgcagag agataacgcc
    17161 ctctaaaata aagaaagtat cttcgctatt gacatcactg gaaaatataa cttgcttttc
    17221 attattaaac tcgaagcgcg taccgtatct ggacaaacat ttatcgagct taccaaattc
    17281 ctgaagaggt ttaactacag ataacatttg cgcgtccttt gcagtaatgc ccgtcaaatc
    17341 cttgacgggc attatttaga ttaaattacc agaatttctt cggagtgaag aatattacca
    17401 agtatattta acacccacgt tcgcggacca gtcttgatct acgtcaccac caccgaggta
    17461 gttagcatcg gtataggcgc tgaagttctt ggtgaagctg aactgagtac ccagaccaac
    17521 acgtaccgca gacccttcag taccgttatc gatggaatca ccgttcacat cgttatcgtt
    17581 gtttgagtcg tcgtagacgt aagccagttt gaagtacgga gtcagagcct gatcttcgct
    17641 gtaggtgaag gtataacctg catctacacc cagttcataa cgcatgctgt cgtaagactg
    17701 accgtcaact ttcatgtcgt tgctcagctg gtagtcatca ccagactgga acagaccaga
    17761 aacgctgccg taaggagtct cgtaaccagc atcacccagt ttgaagtcgt aaccggcttt
    17821 caaaccgaag ccccacgcgt cagagttggt gctaccgtca acgtaagtac cgttgctcat
    17881 ggttgcagac aggtcgttgt tgaagtgaga gtagctcaag ctaccatcaa caaagacgtt
    17941 gttcgcgaag tgagcagaag agtagatgta ggcagtctgg ctgtcttgat ccacctgacc
    18001 agaacggtca ttcatgtcac ctttagcgaa gcctgcagcc gcaccgacga tccacttagc
    18061 gttgttaccg tcaattttgg tatcaacacc gaccatgatg ccgttaacat cctgatcata
    18121 gttgatggtg ccgttgtcgc cgttgaagtt accaccgaag tagcttaccc atgcgccgcc
    18181 gttatcagcc aggccatgac gagagttggt cagacgagta ccaacggtgt cttgttccag
    18241 gttccagata ttggtgttcg cagacgggat gctcagcgcc atgttagcgt agtcggtcag
    18301 ctccatctgt tgcagaacaa cggtgttacc gcgctgttca gcctgatagg tgtatgcacc
    18361 caggtcagct ttgttagcag cagagaaggt cgcgttggtg ttagcgtcgt ttacccgaat
    18421 aagttcttta tctttgtaat cagcgatagt gccagcgcca gttgcgttgt cgatacgaac
    18481 tttgtagtta ccggttgcag caacaacgtt atcaacagag ctgttatcca gttcagtacc
    18541 gttgtctacg tcgccgttac cattgatagt caggtgacca tcagagttca tagcaacaat
    18601 accgtaaccg tagttagact tggaagtatc ccacgtacgg tcgttcacca gatcagcgtt
    18661 cagaacgtaa tcgctgctgt tgatgtcgaa cacaccagaa attacgttgc cattatggtc
    18721 agcaatgttg ccgctggtca gttccagttt atcagtacgg aaagcttcag tatcgaactg
    18781 atcaacattc acatccagca caccaccgtt agtcacagtg atagtattgg tatacagatt
    18841 agaataatta ttccaaccgg tagattcggt taaattaacg gtactgtagc tatcaacagt
    18901 caggtggtct gtagcaacca cgccatttgc accaatattc agtgaagaac cgttggttaa
    18961 accaatggta tctgatacca gagaggaatc agtaacattt acctgagagc cattattt
//
LOCUS       DADMJB010000074        18906 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.074, whole genome shotgun sequence.
ACCESSION   DADMJB010000074 DADMJB010000000
VERSION     DADMJB010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 18906)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18906)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18906
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.074"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(31..2478)
                     /gene="glgP"
                     /locus_tag="JN078_002258"
     CDS             complement(31..2478)
                     /gene="glgP"
                     /locus_tag="JN078_002258"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen phosphorylase"
                     /protein_id="HAY9041448.1"
                     /translation="MNAPFTYSSPTLSVEALKHSIAYKLMFTIGKDPVVANKHEWLNA
                     TLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGRTLSNAMLSLGIYEDVQGAL
                     EAMGLNLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNI
                     VNGSQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRIQQEGKKTRWIETEEILGVAYDQ
                     IIPGYDTDATNTLRLWSAQASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTY
                     SGRELRLRQEYFLVSSTIQDILSRHYQLHKTYDNLADKIAIHLNDTHPVLSIPEMMRL
                     LIDEHQFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYF
                     LKTLQEQYPNDTDLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLF
                     ADFAKIFPGRFTNVTNGVTPRRWLAVANPSLSAVLDEHLGRNWRTDLSLLNELQQHCD
                     FPMVNHAVHQAKLENKKRLAEYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVI
                     TRYNRIKADPDAKWVPRVNIFGGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKV
                     VFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEML
                     DHVGADNIFIFGNTAEEVEELRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEDPGRY
                     RDLVDSLINFGDHYQVLADYRSYVDCQDKVDELYELQEEWTAKAMLNIANMGYFSSDR
                     TIKEYADHIWHIDPVRL"
     gene            complement(2497..3930)
                     /gene="glgA"
                     /locus_tag="JN078_002259"
     CDS             complement(2497..3930)
                     /gene="glgA"
                     /locus_tag="JN078_002259"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HAY9041449.1"
                     /translation="MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAF
                     PDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFA
                     YTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTV
                     HNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYARE
                     ITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAEN
                     KRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVL
                     QEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTL
                     PLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRASLWRF
                     VQRQAMAMDFSWQVAAKSYRELYYRLK"
     gene            complement(3930..5225)
                     /gene="glgC"
                     /locus_tag="JN078_002260"
     CDS             complement(3930..5225)
                     /gene="glgC"
                     /locus_tag="JN078_002260"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HAY9041450.1"
                     /translation="MVSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPA
                     VHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGWSFFNEEMNEFVDLL
                     PAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKG
                     ARCTVACMPVPIEEASAFGVMAVDENDKIIEFVEKPANPPSMPNDPSKSLASMGIYVF
                     DADYLYELLEEDDRDENSSHDFGKDLIPKITEAGLAYAHPFPLSCVQSDPDAEPYWRD
                     VGTLKAYWKANLDLASVVPELDMYDRNWPIRTYNESLPPAKFVQDRSGSHGMTLNSLV
                     SGGCVISGSVVVQSVLFSRVRVNSFCNIDSAVLLPEVWVGRSCRLRRCVIDRACVIPE
                     GMVIGENAEEDARRFYRSEEGIVLVTREMLRKLGHKQER"
     gene            complement(5243..7216)
                     /gene="glgX"
                     /locus_tag="JN078_002261"
     CDS             complement(5243..7216)
                     /gene="glgX"
                     /locus_tag="JN078_002261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HAY9041451.1"
                     /translation="MTQLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANGQE
                     HRYDLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQIDG
                     EFKDNPLLHAGHNEPDYRDNAAIAPKCVVVVDHYDWEDDAPPRTPWDSTIIYEAHVKG
                     LTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNY
                     WGYNPVAMFALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPL
                     FSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFR
                     FDLAAVMGRTPEFRQDAPLFTAIQNCPVLSQVKLIAEPWDIALGGYQVGNFPPLFAEW
                     NDHFRDAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAHDGFTLRDC
                     VCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQG
                     TPMLLAGDEHGHSQHGNNNAYCQDNQLTWLDWSQASSGLTAFTAALIHLRKRIPALVE
                     NRWWEEGDGNVRWLNRYAQPLSTDEWQNGPKQLQILLSDRFLIAINATLEVTEIVLPA
                     GEWHAIPPFAGEDNPVITAVWQGPAHGLCVFQR"
     gene            complement(7213..9399)
                     /gene="glgB"
                     /locus_tag="JN078_002262"
     CDS             complement(7213..9399)
                     /gene="glgB"
                     /locus_tag="JN078_002262"
                     /EC_number="2.4.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching enzyme"
                     /protein_id="HAY9041452.1"
                     /translation="MSDRIDRDVINALIAGHFADPFSVLGMHKTTAGLEVRALLPDAT
                     DVWVIEPKTGRKLAKLECLDSRGFFSGVIPRRKNFFRYQLAVVWHGQQNLIDDPYRFG
                     PLIQEMDAWLLSEGTHLRPYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFNYWD
                     GRRHPMRLRKESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSDPYAFEAQMRPETAS
                     LICGLPEKVVQTEERKKANQFDASISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYA
                     KWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVIL
                     DWVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGNALY
                     WIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQV
                     SGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLT
                     FGILYNYTENFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLL
                     FMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHELDFDPY
                     GFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRHDYRFGINQPGKWREILNTD
                     SMHYHGSNAGNGGTVHSDEIASHGRQHSLSLTLPPLATIWLVREAE"
     gene            complement(9672..10775)
                     /gene="asd"
                     /locus_tag="JN078_002263"
     CDS             complement(9672..10775)
                     /gene="asd"
                     /locus_tag="JN078_002263"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HAY9041453.1"
                     /translation="MKNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA
                     PSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLR
                     MKDDAIIILDPVNQDVITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVAT
                     YQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNF
                     GVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQ
                     AFTIKLKKDVSIPTVEELLAAHNPWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRK
                     LNMGPEFLSAFTVGDQLLWGAAEPLRRMLRQLA"
     gene            10967..11560
                     /gene="yhgN"
                     /locus_tag="JN078_002264"
     CDS             10967..11560
                     /gene="yhgN"
                     /locus_tag="JN078_002264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAAT family transporter YhgN"
                     /protein_id="HAY9041454.1"
                     /translation="MNEIISAAVLLILIMDPLGNLPIFMSVLKHTEPKRRRAIMVREL
                     LIALLVMLVFLFAGEKILAFLSLRAETVSISGGIILFLIAIKMIFPSASGNSSGLPAG
                     EEPFIVPLAIPLVAGPTILATLMLLSHQYPNQMGHLVIALLLAWGGTFVILLQSSLFL
                     RLLGEKGVNALERLMGLILVMMATQMFLDGIRMWMKG"
     gene            complement(11617..12957)
                     /gene="gntU"
                     /locus_tag="JN078_002265"
     CDS             complement(11617..12957)
                     /gene="gntU"
                     /locus_tag="JN078_002265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate transporter"
                     /protein_id="HAY9041455.1"
                     /translation="MTTLTLVLTAVGSVLLLLFLVMKARMHAFLALMVVSMGAGLFSG
                     MPLDKIAATMEKGMGGPLGFLAVVVALGAMFGKILHETGAVDQIAVKMLKSFGHSRAH
                     YAIGLAGLVCALPLFFEVAIVLLISVAFSMARHTGTNLVKLVIPLFAGVAAAAAFLVP
                     GPAPMLLASQMNADFGWMILIGLCAAIPGMIIAGPLWGNFISRYVELHIPDDISEPHL
                     GEGKMPSFGFSLSLILLPLVLVGLKTIAARFVPEGSTAYEWFEFIGHPFTAILVACLV
                     AIYGLAMRQGMPKDKVMEICGHALQPAGIILLVIGAGGVFKQVLVDSGVGPALGEALT
                     GMGLPIAITCFVLAAAVRIIQGSATVACLTAVGLVMPVIEQLNYSGAQMAALSICIAG
                     GSIVVSHVNDAGFWLFGKFTGATEAETLKTWTMMETILGTVGAIVGMIAFQLLS"
     gene            complement(12961..13488)
                     /gene="gntK"
                     /locus_tag="JN078_002266"
     CDS             complement(12961..13488)
                     /gene="gntK"
                     /locus_tag="JN078_002266"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417894.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HAY9041456.1"
                     /translation="MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHP
                     RRNIEKMASGEPLNDDDRKPWLQALNDAAFAMLRTNKVSLIVCSALKKHYRDLLREGN
                     PNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPL
                     EGVVASTIEVIKKGK"
     gene            complement(13627..14622)
                     /gene="gntR"
                     /locus_tag="JN078_002267"
     CDS             complement(13627..14622)
                     /gene="gntR"
                     /locus_tag="JN078_002267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001693277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate operon transcriptional repressor GntR"
                     /protein_id="HAY9041457.1"
                     /translation="MKKKRPVLQDVADRVGVTKMTVSRFLRNPEQVSVALRGKIAAAL
                     DELGYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYG
                     YKPEMEQERLESMLSWNIDGLILTERTHTPRTLKMIEVAGIPVVELMDSQSPCLDIAV
                     GFDNFEAARQMTTAIIARGHCHIAYLGARLDERTIIKQKGYEQAMLDAGLVSYSVMVE
                     QSSSYSSGIELIRQARREYPQLDGVFCTNDDLAVGAAFECQRLGLKVPDDMAIAGFHG
                     HDIGQVMEPRLASVLTPRERMGSIGAERLLARIRGESVTPKMLDLGFTLSPGGSI"
     gene            complement(14846..15541)
                     /locus_tag="JN078_002268"
     CDS             complement(14846..15541)
                     /locus_tag="JN078_002268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HAY9041458.1"
                     /translation="MIYLRKANERGHANHGWLDSWHTFSFANYYDPNFMGFSALRVIN
                     DDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHS
                     EYNPSSTERLHLYQIWIMPEENGITPRYEQRRFDAVQGKQLVLSPDARDGSLKVHQDM
                     ELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTINGVKASTSDGLAIWDEQAISIHAD
                     SDSEVLLFDLPPV"
     gene            complement(15664..16701)
                     /locus_tag="JN078_002269"
     CDS             complement(15664..16701)
                     /locus_tag="JN078_002269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709215.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HAY9041459.1"
                     /translation="MVINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQ
                     APIYSHIHFISDLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTL
                     AQAKELFALAKSKGLSVTPYQNRRFDSCFLTAKKAIESGKLGEIVEVESHFDYYRPVA
                     ETKPGLPQDGAFYGLGVHTMDQIISLFGRPDHVAYDIRSLRNKANPDDTFEAQLFYGD
                     LKAIVKTSHLVKIDYPKFIVHGKKGSFIKYGIDQQETSLKANIMPGEPGFAADDSVGV
                     PEYVNDEGVTVREEMKPEMGDYGRVYDALYQTITHGAPNYVKESEVLTNLEILERGFE
                     QASPSTVTLAN"
     gene            17033..17521
                     /gene="yhhY"
                     /locus_tag="JN078_002270"
     CDS             17033..17521
                     /gene="yhhY"
                     /locus_tag="JN078_002270"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HAY9041460.1"
                     /translation="MSEIVIRHAETRDYEAIRQIHAQPEVYCNTLQVPHPSDHMWQER
                     LADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVADFGICVDSRWKNRGVASALMRE
                     MIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYMAR
                     VK"
     gene            17758..>18906
                     /gene="hcp"
                     /locus_tag="JN078_002271"
     CDS             17758..>18906
                     /gene="hcp"
                     /locus_tag="JN078_002271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tube protein Hcp"
                     /protein_id="HAY9041461.1"
                     /translation="MSNIVYLTVTGEQQGSISAGCGTSESTGNRWQSGHEDEIFTFSL
                     LNNINNTGLGSQFHGITFCKLIDKSTPLFINSINNNEQLFMGFDFYRINRFGRLEKYY
                     YIQLRGAFLSAIHHQIIENQLDTETITISYEFILCQHLIANTEFSYLALPENYNRLFL
                     PNSKNQTNNRFKTLNSKAIGRLLAAGGVYNGNIEGFRDTAEKLGGDAIKGYDQILNEK
                     TAGIAIATASILLTKRSNVDTYTEINSYLGKLRGQQKLLDGIDIIEIIYIKRPSKDLA
                     NLRKEFNKTVRKNFLIKLAKTSEASGRFNAEDLLRMRKGNVPLNYNVHHKLSLDDGGT
                     NDFENLVLIENEPYHKVFTNMQSRIAKGILVGESKITPWAIPSGSIYPP"
BASE COUNT         4825 a         5012 c         4601 g         4468 t
ORIGIN      
        1 cctttggccc cgttctattt attggtgaac ttacaatctc accggatcga tatgccagat
       61 atgatcggcg tactctttga tagtacggtc agaagagaag tagcccatat tggcaatgtt
      121 cagcatcgct tttgcggtcc actcttcctg aagctcgtag agttcgtcga ctttatcctg
      181 acaatcgaca tagctgcgat aatccgccag aacctgatag tgatcgccga agttgatcag
      241 cgaatcaacc agatcgcgat agcgacccgg atcttccgga ctgaatacac cgctgccgat
      301 ttgcgtcagc acctgatgca gctcctcatc tttctcgtag tattcacgcg gtttgtagcc
      361 ctgacgacgc agttcttcca cttcttccgc tgtgttacca aaaataaaga tattgtcagc
      421 accgacatga tccagcatct cgacattcgc accgtccaac gtaccgatag tcagcgcacc
      481 gttaagcgca aacttcatgt tactggtgcc ggaagcttcc gtccctgcca gcgaaatctg
      541 ttcagacaga tctgccgccg gaatgatcaa ctgcgccagg ctaacgctgt agttcgggat
      601 gaacacgact ttcagcttat cgccaatctg cggatcgttg ttgatcactt tcgctacgtc
      661 attgatcaaa tgaataatgt gcttcgccat gtaataggcc gaagccgcct taccgccaaa
      721 aatattcacg cgcggtaccc acttcgcatc cgggtcggcc ttgatgcggt tatagcgggt
      781 aatcacatgc aacacattca tcaattgacg tttgtattcg tgaatacgtt tgatttgtac
      841 atcgaacaac gcctttggat tcaccaccac attcagctgc tgggcgatat actctgccag
      901 acgctttttg ttctccagct tcgcctgatg cacagcgtga ttaaccattg ggaaatcaca
      961 gtgttgttgc agctcattaa gcaggctaag gtcggtgcgc cagttacggc ccaggtgttc
     1021 gtccagcacg gctgaaagcg atgggttcgc taccgctagc cagcgacgcg gcgtcacacc
     1081 gttggtgacg ttggtgaaac gacccgggaa gattttcgca aagtcggcaa acaacgattg
     1141 caccatcaga ttagagtgca gttccgatac accgttaact ttgtggctca caacaaccgc
     1201 cagccaggcc atacgcacac gacgaccgtt ggattcatca atgatcgacg cccgtcccag
     1261 cagatcggta tcgttcggat actgttcctg caaggttttc aggaaatagt cgttgatttc
     1321 aaagatgatc tgcaggtgac gcggcagaat tttacccagc atatcaaccg gccaggtttc
     1381 cagcgcctcg ctcatcagcg tgtggttagt gtaggagaag acctgacaac acacctcaaa
     1441 cgcgtcgtcc cagctaaatt ggtgctcatc gatcagcaga cgcatcatct caggaatcga
     1501 cagtaccgga tgggtatcat tgagatgaat cgcgatttta tccgccaggt tatcgtaggt
     1561 tttatgcaac tgataatggc ggcttaaaat gtcctgaatg gtcgaggaaa ccagaaagta
     1621 ttcctgacgc aggcgcagct cacgcccgga gtaggtggag tcatccggat acagtacgcg
     1681 agatacgttc tcggagtggt ttttatcttc cactgccgcg aagtagtcac cttggttgaa
     1741 tttaccgagg ttaatttcgc tactggcttg cgcactccac aaacgcaacg tgttggtcgc
     1801 gtcggtgtcg taaccaggga ttatctgatc gtaagcgact cccagaatct cttcggtttc
     1861 aatccagcgc gtttttttac cttcctgctg aatgcgacca ccaaaacgga ctttatagcg
     1921 cgtgttgtgg cgtttgaatt cccacgggtt accgtattcc agccagtagt ctggcgactc
     1981 tttctggcta ccgttaacga tgttctgctt gaacataccg tagtcatagc ggatgccgta
     2041 accgcgcccc ggcaacccta acgtcgccag agaatcaagg aagcaagccg ccagacgtcc
     2101 caggccaccg ttaccgaggc ctgggtcatt ttcttcatca atcagctctt cgagatttaa
     2161 ccccatcgct tccagtgcgc cctgtacatc ttcgtaaatt cctagcgaca acatggcgtt
     2221 ggagagcgta cggccaatca aaaactccat cgacaggtag taaacctgac gagtttcttg
     2281 cgacaactgg gcacggtttg aacgtaacca gcgctccacg agacgatcgc gcacagcaaa
     2341 taacgttgcg ttcagccatt catgtttatt ggcgacgacc gggtcctttc caatcgtaaa
     2401 catcagcttg taagcgatag agtgcttaag agcttctacg ctaagcgtgg gcgatgaata
     2461 tgtaaacgga gcattcatat aggcgtttcc tgaaaactat ttcaagcgat agtaaagctc
     2521 acggtacgac ttcgccgcga cctgccagct aaaatccatt gccatagcct gacgttgcac
     2581 aaaccgccac agtgaagcac gagaccacag tacaaaagca cgtcgaatag cccgtaacag
     2641 cgaccaggca ttactatctt caaagacaaa cccactggcg acgccatctg caaggttctc
     2701 aagagaacag tcagaaaccg tatcagcaag cccaccggtg cgccgcacta acggcagcgt
     2761 accgtacttc aatccataaa gttgcgttaa gccgcacggt tcaaaacggc tgggcaccag
     2821 aatgacgtcc gcgccgccca taatgcgatg cgaaaatgct tcgtgatagc caatctgaac
     2881 gcccacctgg ccggggtatt ccgctgccgc cgcaaggaaa ccttcctgca gcaccggatc
     2941 gcccgcgccg agtagcgcca gctgcccgcc ctgctccaga agacccggta aggcttccag
     3001 caccaggtcg agacctttct ggctggtcag acggctcacc actgcaaaaa gcggcacttt
     3061 atcgtcaacc ttaagcccca ttgcgatttg taactggcgc ttattttccg ctttatcttc
     3121 caacgtatcg cgggtgtaac gcgaggccaa cagtaagtcc gtctctggac tccagatttt
     3181 ctcgtccacg ccgttcagta cgccggaaag acgcccttca cggtgacgct gttgcaacag
     3241 accttccata ccgtaggcaa actgcggttc ggtgatctcg cgagcgtagg ttggactgac
     3301 cgccgtaatg tgatcggcat agtacagacc ggccttcagg aaagagattt gtccgttgaa
     3361 ttccagccca tgaatattaa agaatgacca tggcaattgg atgtcattca tgtgatgtgc
     3421 ataaaacatg ccttgatagg ccaagttgtg cacagtaaac accgacttcg ccggacgccc
     3481 gcgcgccgcc agatacgcag gcgcaaggcc tgcatgccag tcgtgcgcat gcaccacatc
     3541 aggacgccag aatgggtcaa gcccgctggc catttctgcc ccaacccacc ccagcagcgc
     3601 aaaacgcaat acgttgtcgg tataggcaaa taagttggta tcgtgatacg ggcttcccgg
     3661 acgatcatag agatgcggcg cgtcaatcag gtatatgcca accccgttgt aatgaccgaa
     3721 caacagcgtg atatgtccgg cgaaggtatc acgacgggat actacctgcg catcggtcac
     3781 gccacggcga atatcgggaa atgcaggcaa cagtacgcga gcgtcaacgc cgtctgcgat
     3841 ttgtgctgcg ggtaatgccc caataacatc agccagaccg ccggttttaa gcagcgggaa
     3901 catctctgaa catacatgta aaacttgcat tatcgctcct gtttatgccc taacttccgt
     3961 agcatttcgc gcgttaccag cacgatgcct tcttctgaac gatagaaacg acgtgcatct
     4021 tcctctgcgt tttcaccaat caccatgcct tccgggataa cacaagcacg atcgatgacg
     4081 cagcggcgca gacggcacga gcgacctacc catacttccg gtaacaatac ggcggaatca
     4141 atgttgcaga atgaattcac gcgaacgcgc gagaacagaa cggactgcac caccaccgaa
     4201 ccggagatca cacaaccgcc ggataccagt gagttaaggg tcatcccgtg gctaccggag
     4261 cgatcctgca cgaatttcgc tggcggtaat gattcattgt aggtgcgaat tggccaattg
     4321 cgatcgtaca tatccagttc cggcaccaca gaggccagat cgagattcgc tttccagtaa
     4381 gctttcagcg tacccacatc gcgccagtac ggctcggcat ccgggtcgga ttgtacgcaa
     4441 gagagcggga acgggtgcgc ataggccaga ccggcttcgg tgatcttggg aatcaaatct
     4501 ttgccaaagt cgtggctgga gttctcatca cgatcgtctt cttccagcag ttcatacaga
     4561 tagtcggcgt caaagacgta gatacccata ctcgccagag atttgctcgg atcgttcggc
     4621 attgacggtg ggttagcagg tttttcaacg aattcgataa ttttatcgtt ctcatcaacc
     4681 gccataacgc caaatgcgga ggcttcttca atcggtactg gcatacaagc aacggtgcaa
     4741 cgtgcgcctt tttcgacgtg atcgataagc atacgcgagt agtcttgctt gtagatatgg
     4801 tcgcccgcca ggatcaccac gtattccgct ttataacggc ggataatgtc gaggttttgg
     4861 gtgaccgcat ctgcggtgcc gcgataccag ttttcccctt tcattctctg ctgtgctggc
     4921 agcagatcga caaactcgtt catttcttca ttgaagaatg accagccgcg ctgaatgtgc
     4981 tgcaccagag tgtgggactg gtactgggtg atcacgccca tacgacggat cccggagttg
     5041 atgcagttag acagcgcaaa gtcgataatg cggaacttac cgccgaagtg tacggccggt
     5101 tttgctcgct tattggttaa atccttcagg cgggtaccac gtcctcccgc cagtatcagg
     5161 gcaacagatt tcaatggcag ctggcgcgcc aacattaagt gatcgttctt ctctaaacta
     5221 accatgacta actccttttt tatcatctct ggaacacaca caatccgtgt gcaggtccct
     5281 gccagacagc cgtaatcact gggttatcct ctccagcgaa tgggggaatg gcgtgccact
     5341 ccccagcagg taaaacaatc tctgttacct caagcgtggc gttaattgcg atcaaaaagc
     5401 gatccgagag cagaatttgc agctgtttcg gcccgttttg ccactcatcc gtgcttaaag
     5461 gttgagcata tcgatttagc caacggacat tgccatcgcc ttcttcccac cagcgattct
     5521 ccaccaaagc gggaatgcgc ttgcgcagat ggattaacgc ggcggtaaat gcggttaaac
     5581 cactgcttgc ctgcgaccag tccaaccagg ttaattggtt atcctgacag taggcattgt
     5641 tattgccatg ctggctgtga ccatgttcgt caccggccag taacatcggc gtaccctggg
     5701 agagcaacaa cgttgttaac aaggcgtgaa tactgtcgcg ccgccgttca accaggtcaa
     5761 gagaaccgcc taacccttct ttaccatgat tgttactgta attgttgttg gtcccgtcgc
     5821 gattttcttc tccgtttgct tcattgtgtt tatggttgaa gcaaacgcag tcgcgaagcg
     5881 taaaaccgtc atgcgcagtg acgagattaa tcgcggcact cggcagacga ccattacgtt
     5941 taaaaacatc gctggaggca gcaaaacgcc cggcaaacgc ccccagaggc aaatcataat
     6001 gtagccagaa acgacgggca gcatcgcgga aatgatcgtt ccactcggca aacagcggcg
     6061 ggaaatttcc cacctgataa ccaccaaggg cgatatccca cggttcagca attaacttca
     6121 cctgcgagag caccgggcag ttctggatag cggtaaacaa cggcgcatcc tgacggaact
     6181 ctggcgtacg gcccatgact gccgccagat caaagcggaa accatcgacg tgacaggttt
     6241 ctacccaata acgcaggcag gcgctggcat aatccaccac cgccggatga ctcaaattga
     6301 gcgtgttgcc gcaaccggtc cagttgtgat aatcgccgtc ttctcttatc caataatagc
     6361 tacggttatc gatcccacgc agtgagaata acgggccgtc gaggtccagt tccgcactat
     6421 ggttgagcac gatatcaaga atgacttcga tacccgcttt atgcagtgct ttgattgcat
     6481 cgcgaaactc atccagcgcc gtttctggcg agcaggcata cgccggatgc agcgcaaaca
     6541 tcgccaccgg gttgtaaccc cagtagttac ttagccccat gcgttgcaga cgtggttcac
     6601 tggcaaactg cgccactggc agcagttcca gcgcggtaat gcccaattgt ttcaaatagt
     6661 tgatcatcac cggatgcccg agggctttat aagtgccacg gatctcgacc ggaatctccg
     6721 ggtgcaagta cgttaatcct ttgacatggg cttcataaat gatggtgctg tcccacggcg
     6781 tgcgcggcgg ggcatcatct tcccagtcat agtgatcaac caccactacg catttcggcg
     6841 caatggcggc gttgtcgcga tagtcaggtt cattatgacc ggcgtgcagc agcgggttat
     6901 ctttaaattc cccgtcaatt tgccgcgcgc aaggatcaat caacaacttc gccgggttaa
     6961 agcgatgccc ctcggcgggt tgccaggggc catgaacgcg ataaccataa cgcaaacccg
     7021 ggcgcgcatc cggcagataa ccgtgccaaa tgtcgccact gtgccctggc aagtcatagc
     7081 gatgttcctg gccattggcg tcaaagacac acagttctac ccgctcggca tgagcggaga
     7141 aaagtgtgaa gttgacgccc tgaccgtcgt aatgcgcgcc gaggggagcg ggtttgccaa
     7201 tggcgagttg tgtcattctg cctcccgaac cagccagata gtggccagcg gtggtagtgt
     7261 caggcttagt gaatgctgac gaccgtggct ggcaatctca tcgctgtgta ccgtgccgcc
     7321 attgcctgca ttactgccgt gatagtgcat ggaatcggta ttgaggattt cacgccattt
     7381 gcctggctga ttaatgccga agcgataatc atgacgcggc accggcgtaa agttactggc
     7441 aacgataatt tcgttaccct ctttatcgcg acgcacaaag atcagcaccg agcgttcttt
     7501 gtcatccacc accagccatt caaagccgta cgggtcaaaa tccagttcat gcattgcttt
     7561 atggtggcgg taggtgaggt tcagatcgcg caccagacgc tggacaccgt ggtgccagtt
     7621 atcgccacct tccaacagat gccagtcgag gctggcgtca tggttccact cacggccctg
     7681 ggcaaattcg ttccccatga acagcagttt cttgcccggg aatgcccaca tccagccata
     7741 gtaggcgcgc aggttagcga atttctgcca tgcgtcgccc ggcatgcggt cgagaatcga
     7801 ttttttaccg tggaccactt catcatgcga caacggcagg acgaagtttt cagtgtagtt
     7861 gtagagaatc ccgaaggtga gtttatcgtg atgatactga cgataaaccg ggtcgagctt
     7921 catgtagtcc agggtgtcat gcatccagcc gaggttccac ttgtaccaga agcccagacc
     7981 gcccatatcc tgcggacgag aaacgccagg gaaatcggta gactcctcag ccattgtcac
     8041 cgcaccggaa acctgctcac caagaatacg gttggtatta cgcaagaatt caatcgcttc
     8101 aagattctcg cgcccgccaa attcgttcgg gatccactcc ccctctttac ggctgtagtc
     8161 gcgataaatc attgacgcca ccgcatcgac gcgcagcgca tcaataccaa aacgttcaat
     8221 ccagtaaagc gcgttaccga cgaggaagtt actgacttca cggcgaccat aattgtagat
     8281 cagcgtattc cagtcctgat gatagccttc gcgcggatcg ctgtgttcat acaagttcgt
     8341 gccatcaaat tcggcaagcg caaagtcatc ggtcgggaag tggcctggca cccagtcgag
     8401 aatcacgttc agacccgctg cgtgtgcggc atcaatgaaa taacggaagt cgtcgcgagt
     8461 accaaaacgg cgggttggtg catacaggcc ggttggctga taaccccaac tgccatcgaa
     8521 gggatgctcg ttaatgggca gtagttcgag gtgggtaaag cccatccatt tagcataagg
     8581 caccagttga tcggccagct cgcggtagct caaccagaaa ttgttatcgg tgtggcgacg
     8641 ccaggagccc aggtgaactt cataaataga gattgacgca tcaaactgat tcgctttttt
     8701 gcgctcttca gtctgtacaa ccttttccgg cagcccgcaa ataagagacg cggtttccgg
     8761 gcgcatttgc gcttcgaagg cataagggtc ggacttcaga cgcaagttgc cattggcatc
     8821 aatcatctcg tatttataga gctgaccgtt atgcgcccca gggataaaca gttcccaaat
     8881 gccgctctct ttacgcagac gcatcgggtg acggcgaccg tcccagtagt tgaattgccc
     8941 aaccaccgag acccgacggg cgtttggagc ccaaacagag aaacgcgtac ctgtgacgcc
     9001 atccatagta tctgcatgcg cgcctaaggt ttcatacggg cgcaggtgag taccttcaga
     9061 taatagccag gcatccattt cctggattag cgggccaaaa cggtaaggat catcaatcag
     9121 gttttgctga ccatgccaga caacagccaa ctgatagcgg aaaaaattct tacgtcgcgg
     9181 aatgacaccg ctaaagaatc cccgtgagtc aagacactcc agttttgcga gtttgcgccc
     9241 ggttttcggt tcaatcaccc acacatcggt agcgtcgggt aaaagggcac ggacttccag
     9301 tcccgcggtg gttttatgca ttcccagtac ggaaaaagga tccgcaaaat ggcctgcaat
     9361 tagcgcgtta atcacgtctc tatcgatacg atcggacatg cttgtcttcc tgttttattg
     9421 tgtcacccca tccaattgga tttttgactt ctggttgtga catttttttg acctgaacgg
     9481 cgcagcactc tgtgcatcct ctctgcgtcg tcctcacttc aggtaaggct gtgaatactc
     9541 atgtattcag ccacccttaa agaatagcca atgctctatt taactcccgg taaatcatga
     9601 aacatctgcg cttactcctg tattacgcac taacaggggc ggcatcgcgc cccagattta
     9661 atgaataaag attacgccag ttgacgaagc atccgacgca gcggctccgc ggccccccac
     9721 agcagctggt cacccacggt aaaggctgac aggaactccg gtcccatatt cagcttacgc
     9781 aggcggccta ccggcgtggt cagcgtgccg gtaacggcag ctggggttag ctcacgcata
     9841 gtgatttccc gatcgttcgg aacgactttc gcccacggat tgtgcgcagc cagcagttct
     9901 tcgacggtcg gaatagacac atcttttttc aatttaatag tgaatgcctg gctgtggcag
     9961 cgcaatgccc cgacacgcac acataaacca tctaccggaa ttacggaaga tgtgttgagg
    10021 atcttgttgg tttccgcctg ccctttccac tcttcgcggc tctgaccgtt atcgagctgt
    10081 ttgtcgatcc acggaatcag gctacccgcc agcggcacgc caaagttatc caccggcagc
    10141 tcaccgctac gggttaaggt tgtgactttg cgttcgatat cgagaatagc agaggacggg
    10201 gtcgcgagtt catctgccac atggccatac agatggccca tctgggttaa taactcacgc
    10261 atatgtcgcg caccaccgcc ggaagcggcc tggtaggttg caacggacac ccaatcaaca
    10321 agatcattgg cgaataaacc acccaacgac atcaacatca ggcttacggt acagttaccg
    10381 ccaacaaaag tcctgatgcc attatttaat ccgtcggtaa tgacgtcctg attgacgggg
    10441 tcaagaatga tgatggcgtc atctttcatg cgcagagacg atgctgcgtc aatccagtaa
    10501 ccttgccatc cgctttcacg aagctttgga tagatttcgt tggtataatc gccgccctga
    10561 caggtcacaa tgatatcgag ggcctttagc gcctccagat caaaggcatc ctgaagtgtg
    10621 ccagtggttc cgccaaaaga cggcgcagcc tggccaagct gagaagtaga aaagaagaca
    10681 gggcgaatgg cgtcgaagtc gcgctcttca accatgcgtt gcatgagaac ggagccgacc
    10741 ataccgcgcc agccgataaa accaacattt ttcataagcg ttttttcctg caaagatgtg
    10801 tgctgtataa atgtgccggt ctcctcttgg cacatctttc accatacaaa aagcagccaa
    10861 agtcgcaagt gaaattaatc aatgatagcg aagccatcag taatgcgact tatcctgctt
    10921 tgttagcaca cagaaagtcc gcggcaatta tcagggaatt tgagttatga atgaaatcat
    10981 ttctgcagca gttttattga tcctgattat ggatccgctc ggaaacctgc ctattttcat
    11041 gtccgtactg aaacatactg aaccgaaaag acggcgggca atcatggtgc gagagttgct
    11101 tattgctctc ctggtgatgc tggtgttcct gtttgcgggt gagaaaattc tggcatttct
    11161 cagcctgcga gcagaaaccg tctccatttc tggcggcatc attctgtttc taatcgccat
    11221 taagatgatt ttccccagcg cttcaggaaa tagcagcggg cttccggcag gtgaagagcc
    11281 atttatcgtg ccgttggcaa ttccgttagt cgccgggccg actattctcg ccacgctgat
    11341 gttgttgtct catcagtacc cgaatcagat gggacatctg gtgattgctc tgctgctggc
    11401 ctggggcggc acctttgtca tcctgctaca gtcttcgcta tttttacgtc tgctgggcga
    11461 gaaaggggtg aacgcacttg aacgcctgat gggattgatt ctggtgatga tggcaaccca
    11521 gatgttcctc gacggcattc gaatgtggat gaaggggtaa cgaggagagt ttttcgaaaa
    11581 gaacccggta gcgtcacaac taccgggcga acaaacttaa ctcaacagct ggaacgcaat
    11641 catcccaacg atggcaccaa cagtgccgag gatggtttcc atcatggtcc aggttttcag
    11701 cgtttcggct tcggtcgcgc cggtaaattt accgaacaac cagaaaccgg cgtcgttaac
    11761 gtggctgaca acaatcgaac caccagcgat acaaatcgac agtgccgcca tttgcgcacc
    11821 ggagtagttc agttgttcaa tgaccggcat caccagcccc accgccgtta aacaggcaac
    11881 ggtggcagac ccctgaatga tgcgcactgc agcggccagc acgaagcagg tgatagcaat
    11941 cggcaggccc atgccggtta acgcttcgcc cagtgccgga cctacgccag agtcaaccag
    12001 cacctgtttg aacacgccgc ctgcaccaat caccagcaga atgatccccg ccggttgtag
    12061 cgcgtgaccg caaatctcca tcactttgtc ttttggcatg ccctgacgca ttgccaggcc
    12121 ataaatcgct accagacaag caaccagaat cgcggtaaat ggatgaccaa taaactcgaa
    12181 ccattcgtaa gcagttgatc cttctggcac aaaacgagcg gcaatggttt tcagccccac
    12241 cagcaccagc ggcaacagga tcagcgacag gctgaatccg aaggacggca ttttgccttc
    12301 gccgagatgc ggttcgctga tgtcgtcagg aatatgcaac tccacgtaac ggctgatgaa
    12361 attaccccac agcggcccgg caataatcat tcccggaatt gccgcacaca gaccaatcag
    12421 gatcatccag ccaaagtcgg cattcatctg cgatgccagc aacatcggcg ctggtccagg
    12481 caccagaaat gccgccgctg ccgccacgcc tgcgaataat gggattacca gcttcaccag
    12541 gttcgtaccg gtgtggcgcg ccattgagaa agcaacgcta atcagcagaa ctatcgccac
    12601 ttcaaagaac agcggtagcg cacagaccaa ccccgcaagg ccgatggcat aatgcgcgcg
    12661 gctgtgaccg aaggatttga gcattttgac ggcaatctga tcgactgcgc cggtttcatg
    12721 taagatcttg ccaaacatag ctcccagggc gacaaccacc gccaggaagc cgagggggcc
    12781 tcccatccct ttttccatcg tcgctgcgat tttatcgagc ggcataccgg aaaaaaggcc
    12841 agcccccatg gacaccacca tcaaagccag gaaagcgtgc atacgcgcct tcatgactaa
    12901 aaacagcagc agtaaaacag accctactgc tgttaaaaca agcgttaatg tagtcactac
    12961 ttatttgcct tttttaataa cctcaatggt gcttgccaca acaccttcca gcggttgatc
    13021 gatatccacc accagtacat cggtttcgtc cgcacccggc tcctgcagcg tttcaaactg
    13081 cgtcaccaac atttgggttt taaagaaatg gcctttgcgc gctttcaagc gactttcaat
    13141 cacatcaaaa tcgcctttca ggtagatgaa agagagattc ggattacctt cacgcagcaa
    13201 gtcgcgatag tgctttttca gtgcagaaca gacgatcagc gacactttat tggtgcgcag
    13261 catagcaaac gcggcgtcgt tcagcgcctg caaccagggt ttgcgatcgt cgtcattcag
    13321 cggttcgcca gacgccattt tttcgatatt gcgccgtgga tggaggaaat caccatcaag
    13381 aaacgcggca tgaagttgat gcgccacttc actggcgacc gcagatttgc cgctgcccga
    13441 tacgcccatc aagacgtaaa tgtggtgatc atggttagtc gtgctcaaag tggtgccccc
    13501 acaatacaag aattaaaaat gttacgggta actgttatcg gtaacattgt ccagccggac
    13561 aatatcagaa gcaatatcca tccgtgcctt aagtgtataa gtgtgagcta cttcaaattt
    13621 gtaggcttaa atagatccgc ccggtgacaa ggtgaaacct aaatctaaca ttttcggtgt
    13681 cacagattcg ccacgaatac gcgccagcag gcgttcagcg ccaatactgc ccatccgctc
    13741 acgcggcgtc agcacgctcg ctaaccgcgg ctccatcacc tggccaatgt catgaccgtg
    13801 gaaaccggca atcgccatat cgtcaggaac cttcaatccc agacgctgac attcaaacgc
    13861 cgcgccgacc gccaggtcat cgttggtaca gaacacgcca tccagctgcg gatattcccg
    13921 ccgcgcctgg cgaatcagtt caataccgga agagtaagaa gaagattgct caaccatcac
    13981 gctatacgac accagacctg catccagcat cgcctgttcg tatcccttct gtttgatgat
    14041 agtacgttcg tcgagacgcg cgccgagata ggcaatgtgg caatgcccgc gagcaataat
    14101 ggcggtggtc atctggcgtg ccgcttcaaa gttatcaaaa ccgacggcga tatcgaggca
    14161 cggcgactgg ctgtccatga gttccaccac cgggatcccc gccacttcaa tcatctttaa
    14221 ggtgcgcggc gtgtgggtac gttcggtgag gatcagtccg tcgatattcc atgagagcat
    14281 ggattcgaga cgttcttgct ccatttccgg tttataaccg tagtgagcca gcatggtctg
    14341 ataaccgtgc gcgtcggtga cgctttcgat tccgcgtaat acttccgcga aaacctggtt
    14401 ggtgagagaa ggtaacagga cgccaatcgc ccggctggtg gcgttagaga ggatatcggg
    14461 cgcacgattg ggaatatagc ccagttcatc aagagcggcg gcaatcttgc cgcgtagagc
    14521 gacggaaacc tgctccgggt tgcgtaaaaa acggctgacc gtcattttgg tcacgcctac
    14581 acggtcagcc acatcctgaa gtacgggtct tttctttttc atcgtcctga aggtacaaaa
    14641 gagatagatt ctcttagttt aacacggacg catcagaacc ttcccgggga aaacagtgct
    14701 tgtttacaat tattagatat acactaaatc aattgcatcg cattgtgcta acgacgcggc
    14761 aaaaccccgg aagcgtgcat cagcacgcga ccggagcgag cgaggaagcc tgcaaaaagg
    14821 caggcttcaa agatgccgtt gagttttaaa ccggcggcag atcgaacagt aacacttcgc
    14881 tgtcgctatc cgcatggatg gagattgcct gctcatccca gattgccaga ccatcgctgg
    14941 tcgaggcttt cacgccgtta atggtgacat tgcctttcac cacctggatc cagacgcggc
    15001 gttcagcggc aatctgatgc accgactgct catctttcag caacgcccag cggtacagtt
    15061 ccatatcctg atgcactttc aatgaaccat ctcgcgcatc cggcgagagc accagctgtt
    15121 tgccctgtac ggcatcgaag cgacgctgtt cataacgcgg cgtaataccg ttttcttcag
    15181 gcatgatcca gatctgatac agatgcagac gctcggtgct gcttgggttg tactctgagt
    15241 gacgaatacc cgtacccgca ctcataatct ggaactcacc cgccggaacc tgctctttat
    15301 tgcccatgct gtcctgatgc tcaacagtac cttccagcac gtaggtcaaa atttccatat
    15361 ctttatgcgg gtgagtgccg aagccctgcc ctgcttcaat cacgtcgtcg ttaatcacgc
    15421 gcagcgcgga gaagcccata aagttcggat cgtaatagtt ggcaaaagag aaagtatgcc
    15481 aggagtccag ccagccatga tttgcatgac cacgttcatt tgctttgcgt aagtagatca
    15541 tttgtattcg ccccctgaat gatttcgatg ggcttagtgt ggacccgatc tgcctgggat
    15601 gatagagggt gaaaattgcc ccctctgttc aaaaaaattg aactattcga ggggccatca
    15661 aacttaattc gcgagagtca ctgtggaggg agaggcttgc tcaaatccgc gttcaaggat
    15721 ttccagattg gtaagaactt cagattcctt gacgtaattt ggcgcaccgt gggtgatggt
    15781 ttgatacaac gcatcataaa cgcgcccgta atcgcccatc tccggcttca tctcttctct
    15841 gaccgtcacg ccctcgtcat tgacatactc cggcacaccg accgaatcat ccgctgcgaa
    15901 tcccggttcg cccggcataa tattagcctt caggctggtt tcctgctggt cgataccgta
    15961 tttaataaac gaacctttct taccgtgaac gataaatttc ggataatcga ttttcaccag
    16021 atggctggtt ttgacgatgg ctttcaggtc gccataaaac agttgcgctt caaaggtgtc
    16081 gtcaggattg gctttattac gcaggctgcg gatgtcataa gcgacgtgat ccgggcgacc
    16141 gaacagagaa ataatctggt ccatcgtatg cacaccaagg ccataaaacg cgccatcctg
    16201 cggcagccca ggtttggttt ctgccaccgg gcggtaatag tcaaaatggc tttccacttc
    16261 aacaatctct cccaacttgc cactttcaat cgcttttttc gctgtcagga agcaggagtc
    16321 aaagcgacga ttctgatacg gcgtgacgct cagccctttg cttttcgcca acgcaaacag
    16381 ctccttcgcc tgggcaagcg tcggggtgaa cggtttttcg accagcacat ttttcccggc
    16441 ttccagcgcg cgtttcgcgt actcgaaatg gctgtccgcg tgggtgcaga caacaaccag
    16501 cttaacatcg ggatcgttta gtacttcgtc gagatcgctg atgaaatgga tatgggaata
    16561 aatgggagcc tgttcttccg gcttcgcatg gcgacgaaaa atatgcgcga catgccagct
    16621 atccttgcgg ttaagtacat acggcagatg gtaacgggtg gtgcttttgc cgaagccaat
    16681 aaaggcgcag ttgatgacca tgatttcgtc ctttttaagg tggttattta caccttagcg
    16741 caaagcggac gtggttccta ctggagtgcg cataacgaac acaagcactc ccgtggataa
    16801 attgagaacg aaagatcaaa aaaaagccag cacccggctg gctaagtaat actggaagca
    16861 atgtgagcaa tgtcgtgctt tcaggttctc cgcgagggtc ttcctgatcg cgagacaata
    16921 ataatcattc tcattcgcac ttgtccaaca ctttttgcaa aaaaatgcat ttgactcgca
    16981 tttgaaagtc aatgatgttg aaagggacat ttaccccaaa gaggacaaag gaatgagtga
    17041 gatagtaata cgccacgcag aaacacggga ttacgaggcc atcaggcaga ttcacgccca
    17101 gccggaggtg tattgcaaca cactacaggt gcctcatcct tccgatcata tgtggcagga
    17161 gcgactcgcc gatcgtcccg gcatcaagca actcgtcgcc tgtattgatg gagacgtcgt
    17221 gggccatctc accattgacg tgcaacagcg cccacgccgc agtcatgttg ccgattttgg
    17281 tatctgtgtc gactctcgtt ggaagaaccg cggcgtcgcc agcgccctga tgcgagagat
    17341 gattgaaatg tgcgacaact ggttgcgggt agatcgcatt gaactaaccg tgtttgtcga
    17401 taacgccccg gcaattaagg tctataaaaa atacggcttt gaaattgaag ggactggtaa
    17461 gaagtacgca ttgcgtaatg gtgaatatgt cgatgcatat tatatggcgc gggtgaagta
    17521 agatagtgcc ctttttctga gatggaaaaa gggtgtcatt caaaatcgac ataccttcct
    17581 ttaaggtatt tatttaccca atacatatat tgagatttaa ctcataatta cttcctaaag
    17641 tgtaatattt tattttttaa tatatacgcc tacaatttcc tggagtaaat aaataacaat
    17701 taacaagcat aatattgcca ttgataaaat agcatgccat aaaaggactt ttcagggatg
    17761 agtaatattg tttacctgac agtaacggga gaacaacaag gaagcatctc cgcaggttgt
    17821 gggacttctg agtctacagg taatcgttgg cagagcgggc atgaggatga aatatttaca
    17881 ttctcactct taaataatat taataatacg gggcttggtt cacagttcca tggtataaca
    17941 ttttgtaaat taattgataa aagcactcca ttatttatta attccattaa caataatgaa
    18001 caattattta tgggatttga cttctatcga ataaatagat ttggtagatt ggaaaagtat
    18061 tattatatac aactaagagg cgctttttta tcggctattc atcaccagat cattgaaaac
    18121 caactggata cagaaacaat aactattagt tatgaattta tcctctgtca acatcttatc
    18181 gcaaataccg agttcagcta tttggcactc cctgaaaatt ataaccgatt gtttttacca
    18241 aattcaaaaa accaaacaaa taatcgtttc aaaacgttaa acagcaaagc tattggcagg
    18301 ctacttgctg ctggtggcgt atacaatggg aacattgaag gattcagaga tactgcggaa
    18361 aaactgggtg gagatgcaat aaaaggctat gatcaaatac taaatgaaaa aacagcgggc
    18421 atagcgatag caacagcatc tattctttta acaaagcgtt ctaatgttga tacatataca
    18481 gaaataaata gttacttagg caaacttaga ggtcaacaaa aacttcttga tggtatagac
    18541 ataatagaaa taatatacat taagagacct tcaaaagact tagctaactt acgaaaggag
    18601 tttaataaaa ctgtaagaaa aaattttctt atcaaacttg caaaaacctc cgaagcatct
    18661 ggaagattca acgccgaaga ccttttaaga atgagaaagg gcaatgttcc tctaaattat
    18721 aatgttcacc ataaactatc tctagatgat ggtggtacta atgatttcga aaatttagta
    18781 ttaatcgaaa acgaaccata tcataaagtt tttactaaca tgcaatcacg aatagctaag
    18841 ggaatattag taggtgaaag caaaatcact ccctgggcca ttccatctgg ctcaatttat
    18901 cctccc
//
LOCUS       DADMJB010000075        18496 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.075, whole genome shotgun sequence.
ACCESSION   DADMJB010000075 DADMJB010000000
VERSION     DADMJB010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 18496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18496
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.075"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..891
                     /locus_tag="JN078_002272"
     CDS             <1..891
                     /locus_tag="JN078_002272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9041462.1"
                     /translation="WFNIKERGRPMGFFNAASTIGVAVSPPILAAMMLVMGWRGMFIT
                     IGVLGIFLAIGWYMLYRNREHVELTAVEQAYLNAGSVNARRDPLSFAEWRSLFRNRTM
                     WGMMLGFSGINYTAWLYLAWLPGYLQTAYNLDLKSTGLMTAIPFLFGAAGMLVNGYVT
                     DWLVKGGMAPIKSRKICIIAGMFCSAAFTLIVPQATTSMTAVLLIGMALFCIHFAGTS
                     CRGLIHVAVASRMTASVGSIQNFASFICASFAPIITGFIVDTTHSFRLALIICGCVTA
                     AGALAYIFLVRQPINDPRKD"
     gene            complement(940..2595)
                     /gene="tsr"
                     /locus_tag="JN078_002273"
     CDS             complement(940..2595)
                     /gene="tsr"
                     /locus_tag="JN078_002273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HAY9041463.1"
                     /translation="MLKRIKIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTVLQ
                     TIRQQQSTLNGSWVALLQTRNTLNRAGIRYMMDQNNIGSGSTVAELMQSASISLKQAE
                     KNWADYEALPRDPRQSTAAAAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPTQGYQ
                     DGFEKQYVAYMEQNDRLYDIAVSDNNASYSQAMWILVGVMIVVLAVIFAVWFGIKASL
                     VAPMNRLIDSIRHIAGGDLVKPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANA
                     IYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSAS
                     ETAQRGGKVVDNVVQTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQ
                     GRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVT
                     RVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRL
                     TEAVAVFRIQQQQRETSAVVKTVTPAAPRKMAVADSEENWETF"
     gene            complement(2714..3160)
                     /gene="hpaR"
                     /locus_tag="JN078_002274"
     CDS             complement(2714..3160)
                     /gene="hpaR"
                     /locus_tag="JN078_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoprotocatechuate degradation operon regulator
                     HpaR"
                     /protein_id="HAY9041464.1"
                     /translation="MHDSLTIALLQAREAAMSYFRPIVKRHNLTEQQWRIVRILAESP
                     SMDFHDLAYRACILRPSLTGILTRMERDGLVLRLKPINDQRKLYISLTKEGQALYNRA
                     QTQIEEAYRQIEAQFTAEKMQQLTHLLEEFIALGNSRQEAIPGDNE"
     gene            3432..4721
                     /locus_tag="JN078_002275"
     CDS             3432..4721
                     /locus_tag="JN078_002275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710093.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate degradation bifunctional
                     isomerase/decarboxylase"
                     /protein_id="HAY9041465.1"
                     /translation="MKGTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNT
                     VIGCGEPIPFPQGEKVLSGATVALIVGKTATKVREEDAAEYIAGYALANDVSLPEESF
                     YRPAIKAKCRDGFCPIGETVALSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSAL
                     SEFATLNPGDAILLGTPQARVEIQPGDRVRVLAEGFPPLENPVVDEREVTTRKSFPTQ
                     PHPHGTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYE
                     AELVVVIGKQARNVSEADAMDYVAGYTVCNDYAIRDYLENYYRPNLRVKSRDGLTPML
                     STIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIA
                     TGTPKGLSDVVPGDEVVVEVEGVGRLVNRIVSEDTAK"
     gene            4718..6177
                     /gene="hpaE"
                     /locus_tag="JN078_002276"
                     /pseudo
     CDS             4718..6177
                     /gene="hpaE"
                     /locus_tag="JN078_002276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710092.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="5-carboxymethyl-2-hydroxymuconate semialdehyde
                     dehydrogenase"
     gene            6179..7030
                     /gene="hpaD"
                     /locus_tag="JN078_002277"
     CDS             6179..7030
                     /gene="hpaD"
                     /locus_tag="JN078_002277"
                     /EC_number="1.13.11.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxyphenylacetate 2,3-dioxygenase"
                     /protein_id="HAY9041466.1"
                     /translation="MGKLALAAKITHVPSMYLSELPGKNHGCRQGAIDGHKEISKRCR
                     EMGVDTIIVFDTHWLVNSAYHINCADHFEGVYTSNELPHFIRDMTYNYEGNPELGQLI
                     ADEALKLGVRAKAHNIPSLKLEYGTLVPMRYMNEDKHFKVVSISAFCTVHDFADSRKL
                     GEAILKAIEQYDGTVAVLASGSLSHRFIDDQRAEEGMNSYTREFDRQMDERVVKLWRE
                     GQFKEFCNMLPEYADYCYGEGNMHDTVMLLGMLGWDKYDGKVEFITELFPSSGTGQVN
                     AVFPLPA"
     gene            7040..7420
                     /locus_tag="JN078_002278"
     CDS             7040..7420
                     /locus_tag="JN078_002278"
                     /EC_number="5.3.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-carboxymethyl-2-hydroxymuconate
                     Delta-isomerase"
                     /protein_id="HAY9041467.1"
                     /translation="MPHFIVECSDNIREEADLPGLFAKVNPTLAATGIFPLAGIRSRV
                     HWVDTWQMADGQRDYAFVHMTLKIGAGRSLESRQQAGEMLFELIKTHFAALMESRLLA
                     LSFEIEELHPTLNFKQNNVHALFK"
     gene            7531..8334
                     /gene="hpaH"
                     /locus_tag="JN078_002279"
     CDS             7531..8334
                     /gene="hpaH"
                     /locus_tag="JN078_002279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710089.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-hepta-3-ene-1,7-dioic acid hydratase"
                     /protein_id="HAY9041468.1"
                     /translation="MFDKHTHTLIAQRLDQAEKQREQIRAISLDYPEITIEDAYAVQR
                     EWVRLKIAEGRTLKGHKIGLTSKAMQASSQISEPDYGALLDDMFFHDGSDIPTDRFIV
                     PRIEVELAFVLAKPLRGPNCTLFDVYNATDYVIPALELIDARCHNIDPETQRPRKVFD
                     TISDNAANAGVILGGRPIKPDELDLRWISALMYRNGVIEETGVAAGVLNHPANGVAWL
                     ANKLAPYDVQLEAGQIILGGSFTRPVPARKGDTFHVDYGNMGSISCRFV"
     gene            8345..9133
                     /gene="hpaI"
                     /locus_tag="JN078_002280"
     CDS             8345..9133
                     /gene="hpaI"
                     /locus_tag="JN078_002280"
                     /EC_number="4.1.2.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-2-oxoheptanedioate aldolase"
                     /protein_id="HAY9041469.1"
                     /translation="MENSFKAALKAGRPQIGLWLGLSSSYSAELLAGAGFDWLLSDGE
                     HAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAR
                     EAVHATRYPPAGIRGVGSALARASRWNRIPDYLQKANDQMCVLVQIETREAMKNLPQI
                     LDVEGVDGVFIGPADLSADMGYAGNPQHPEVQAAIEQAIVQIRESGKAPGILIANEQL
                     AKRYLELGALFVAVGVDTTLLARAAEALAARFGAQATAVKPGVY"
     gene            9308..10684
                     /gene="hpaX"
                     /locus_tag="JN078_002281"
     CDS             9308..10684
                     /gene="hpaX"
                     /locus_tag="JN078_002281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate permease"
                     /protein_id="HAY9041470.1"
                     /translation="MSDTSPAIPESIDPANQHKALTAGQQAVIKKLFRRLIVFLFVLF
                     IFSFLDRINIGFAGLTMGRDLGLSATMFGLATTLFYAAYVIFGIPSNIMLSIVGARRW
                     IATIMVLWGIASTATMFATGPTSLYVLRILVGITEAGFLPGILLYLTFWFPAYFRARA
                     NALFMVAMPVTTALGSIVSGYILSLDGVMALKGWQWLFLLEGFPSVLLGVMVWFWLDD
                     SPDKAKWLTKEDKKCLQEMMDNDRLTLVQPEGAISHHAMQQRSMWREIFTPVVMMYTL
                     AYFCLTNTLSAISIWTPQILQSFNQGSSNITIGLLAAVPQICTILGMVYWSRHSDRRQ
                     ERRHHTALPYLFAAAGWLLASATDHNMIQMLGIIMASTGSFSAMAIFWTTPDQSISLR
                     ARAIGIAVINATGNIGSALSPFMIGWLKDLTGSFNSGLWFVAALLVIGAGIIWAIPMQ
                     SSRPRATP"
     gene            10694..11580
                     /gene="hpaA"
                     /locus_tag="JN078_002282"
                     /pseudo
     CDS             10694..11580
                     /gene="hpaA"
                     /locus_tag="JN078_002282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224927.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate catabolism regulatory
                     protein HpaA"
     gene            11831..13393
                     /gene="hpaB"
                     /locus_tag="JN078_002283"
     CDS             11831..13393
                     /gene="hpaB"
                     /locus_tag="JN078_002283"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000801462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     oxygenase component"
                     /protein_id="HAY9041471.1"
                     /translation="MKPEDFRASTQRPFTGEEYLKSLQDGREIYIYGERVKDVTTHPA
                     FRNAAASVAQLYDALHKPEMQDSLCWNTDTGSGGYTHKFFRVAKSANDLRQQRDAIAE
                     WSRLSYGWMGRTPDYKAAFGCALGANPGFYGQFEQNARNWYTRIQETGLYFNHAIVNP
                     PIDRHLPTDKVKDVYIKLEKETDAGIIVSGAKVVATNSALTHYNMIGFGSAQVMGENP
                     DFALMFVAPMDADGVKLISRASYEMVAGATGSPYDYPLSSRFDENDAILVMDNVLIPW
                     ENVLIYRDFDRCRRWTMEGGFARMYPLQACVRLAVKLDFITALLKKSLECTGTLEFRG
                     VQADLGEVVAWRNTFWALSDSMCSEATPWVNGAYLPDHAALQTYRVLAPMAYAKIKNI
                     IERNVTSGLIYLPSSARDLNNPQIDQYLAKYVRGSNGMDHVQHIKILKLMWDAIGSEF
                     GGRHELYEINYSGSQDEIRLQCLRQAQSSGNMDKMMAMVDRCLSEYDQNGWTVPHLHN
                     NDDINMLDKLLK"
     gene            13411..13923
                     /locus_tag="JN078_002284"
     CDS             13411..13923
                     /locus_tag="JN078_002284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase reductase
                     subunit"
                     /protein_id="HAY9041472.1"
                     /translation="MQLDEQRLRFRDAMASLSAAVNIITTEGDAGQCGITATAVCSVT
                     DTPPSLMVCINANSAMNPVFQGNGKLCVNVLNHEQELMARHFAGMTGMAMEERFSLSC
                     WQKGPLAQPVLKGSLASLEGEIRDVQAIGTHLVYLVEIKNIILSAEGHGLIYFKRRFH
                     PVMLEMEAAI"
     gene            14316..16466
                     /gene="btsT"
                     /locus_tag="JN078_002285"
     CDS             14316..16466
                     /gene="btsT"
                     /locus_tag="JN078_002285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313340.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate/proton symporter BtsT"
                     /protein_id="HAY9041473.1"
                     /translation="MDTKKLFKHIPWVILGIIGAFCLAVVALRRGEHVSALWIVVASV
                     SVYLVAYRYYSLYIAQKVMKLDPTRATPAVINNDGLNYVPTNRYVLFGHHFAAIAGAG
                     PLVGPVLAAQMGYLPGTLWLLAGVVLAGAVQDFMVLFISSRRNGASLGEMIKEEMGPV
                     PGTIALFGCFLIMIIILAVLALIVVKALAESPWGVFTVCSTVPIALFMGIYMRFIRPG
                     RVGEVSVIGIVLLVASIYFGGVIAHDPYWGPALTFKDTTITFALIGYAFVSALLPVWL
                     ILAPRDYLATFLKIGVIVGLALGIVVLNPELKMPAMTQYIDGTGPLWKGALFPFLFIT
                     IACGAVSGFHALISSGTTPKLLANETDARFIGYGAMLMESFVAIMALVAASIIEPGLY
                     FAMNTPPAGLGITMPNLHEMGGENAPIIMAQLKDVTAHAAATVSSWGFVISPEQILQT
                     AKDIGEPSVLNRAGGAPTLAVGIAHVFHKVLPMADMGFWYHFGILFEALFILTALDAG
                     TRSGRFMLQDLLGNFIPFLKKTDSLVAGIIGTAGCVGLWGYLLYQGVVDPLGGVKSLW
                     PLFGISNQMLAAVALVLGTVVLIKMKRTQYIWVTVVPAVWLLICTTWALGLKLFSTNP
                     QMEGFFYMASQYKEKIANGTDLTAQQIANMNHIVVNNYTNAGLSILFLIVVYSIIFYG
                     FKTWLAVRNSDKRTDKETPYVPIPEGGVKISSHH"
     gene            16597..16800
                     /locus_tag="JN078_002286"
     CDS             16597..16800
                     /locus_tag="JN078_002286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HAY9041474.1"
                     /translation="MFGNLGQAKKYLGQAAKMLIGIPDYDNYVEHMKTNHPDKPYMSY
                     EEFFRERQNARYGGDGKGGMRCC"
     gene            16811..17767
                     /gene="yjiA"
                     /locus_tag="JN078_002287"
     CDS             16811..17767
                     /gene="yjiA"
                     /locus_tag="JN078_002287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313338.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HAY9041475.1"
                     /translation="MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS
                     VDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMA
                     DPGPIIQTFFSHEILCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKT
                     DVAGEAEKLRERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIA
                     DKQNDISSIVVELDYPVDISEVSRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGV
                     QRLYSADWDRPWGDEKPHSTMVFIGIQLPEDEIRAAFAGLKK"
     gene            complement(17869..>18496)
                     /locus_tag="JN078_002288"
     CDS             complement(17869..>18496)
                     /locus_tag="JN078_002288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001569102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin acylase"
                     /protein_id="HAY9041476.1"
                     /translation="PGSAILNVWLTSMLKRTVVAAVPMPFDKWYSASGYETTQDGPTG
                     SLNISVGAKILYEAVQGDKSPIPQAVDLFAGKPQQEVVLAALEDTWETLSKRYGNNVS
                     NWKTPAMALTFRANNFFDVPQAAAEETRHQAEYQNRGTENDMIVFSPTTSDRPVLAWD
                     VVAPGQSGFIAPDGTVDQHYEDQLKMYENFGRKSLWLTKQDVEAHKES"
BASE COUNT         4226 a         5120 c         4934 g         4216 t
ORIGIN      
        1 tggttcaaca tcaaagagcg cggacgcccg atgggcttct tcaacgcagc ttctaccatt
       61 ggcgttgccg taagcccacc gattctggcg gcgatgatgc tggtgatggg ctggcgcggg
      121 atgtttatta ccattggtgt actggggatt tttctcgcca tcggctggta tatgctctat
      181 cgcaaccgcg agcacgtaga actgactgcc gttgagcaag cttatctcaa tgcaggtagc
      241 gtcaatgccc gccgagatcc gctcagtttt gccgaatggc gcagcctgtt ccgtaaccgt
      301 acaatgtggg gaatgatgct cggattcagt ggcatcaact acactgcgtg gctgtatctg
      361 gcctggcttc ctggttacct gcaaacagcc tataacctgg atttaaaaag cacagggttg
      421 atgacggcta tccctttcct gtttggggct gccgggatgc tggtcaacgg ttacgttacc
      481 gactggctgg tcaaaggggg aatggctccg attaaaagcc gtaagatctg cattattgcc
      541 gggatgttct gttctgccgc ctttacgctg atagtaccac aagcgacaac atccatgacg
      601 gcggttctgc tgattggcat ggcactgttc tgtattcact ttgccggaac atcctgccgg
      661 ggcttgatcc acgtcgcagt tgcttctcgc atgactgcgt cggtgggcag tatccagaac
      721 tttgccagct tcatctgcgc ctcttttgcg ccgatcatta ctggttttat tgttgatacc
      781 acccactcat tccgtctggc actaatcatc tgcggttgcg tcaccgcagc gggggcactg
      841 gcgtacatct tcctggttcg tcagccgatc aacgacccac gtaaagatta atctccttat
      901 gcccgataac attttgctta tcgggcattt tcatggcgat taaaatgttt cccagttctc
      961 ctcgctatct gccacggcca ttttacgcgg cgcagctggc gtcacggttt ttaccacagc
     1021 cgatgtttca cgctgctgtt gctgaatccg gaacactgcc actgcttcgg tcaggcgact
     1081 ggcctgctct tccagcgcgg cggcggcagc ggcagactct tccaccagcg cggcgttctg
     1141 ttgagttacc cggtccatct cagcaaccgc taagccaacc tgatcgatac cacggctctg
     1201 ctcatcagaa gcagaagcaa tttcgcccat aatgtccgtc acgcgggtca cggcgctgac
     1261 aatctccgcc attgtttccc cggcgctttc gaccagcgta gagccaacat ccactttccc
     1321 caccgagtct tcaatcaggc ttttaatttc acgagccgcc tgggcgctgc gctgggccag
     1381 attacgcact tctcccgcga ccaccgcaaa accgcgccct tgctcacccg cacgcgcagc
     1441 ctcaaccgcc gcgttcaaag ccagaatatt ggtctggaag gcaatgccgt caattacgct
     1501 gataatatcg gcgattttct gcgaactggt ggagatatcg cgcatagtct gtaccacgtt
     1561 atctaccact ttgccgccgc gttgcgccgt ttcagaagca cttaacgcca gatggctggc
     1621 ctggcgcgca ttttcggcgt tctgcttcac cgttgcggtc agttgctcca tgctggctgc
     1681 cgtctcttcc agcgaagcgg cctgttgctc ggtgcgcgaa gagagatcgt tattgccggt
     1741 ggcgatttcg ctggcaccgc tatagatggc attggccccg ttgcgcacat caccgacggt
     1801 acgcatcagc tctccctgca tatggcgcaa actctctgcc agttgcccca tctcattaga
     1861 gccatccacc tcaatcggtt tcaccagatc gccgcctgca atatgacgaa tgctgtcaat
     1921 caggcgattc attggcgcta ccagcgaggc tttaataccg aaccagacgg cgaagatgac
     1981 cgccagtacg acgatcatca cgcccaccag aatccacatc gcctggctgt aggaggcatt
     2041 gttatcgctg acggcgatat catagagccg atcgttttgc tccatgtaag ccacatactg
     2101 cttctcgaaa ccgtcctgat atccctgggt cggctgatca aagaactcgt tgattttgcc
     2161 tgcacctaac agttggatca gctccgccag cgcattgtga taaatatcgt aattacgttt
     2221 gatctctgcc gctgcggcgg tgctctgacg cgggtcacgc ggcaacgctt cgtaatccgc
     2281 ccagtttttt tccgcctgtt tcagcgaaat actggcactc tgcatcagct cagcaacggt
     2341 tgaaccgcta ccaatattat tctgatccat catgtagcgg atacccgcgc ggttgagggt
     2401 gttacgcgtc tgcaacaacg cgacccagct gccattcagc gtggattgct gctggcgaat
     2461 ggtttgtaaa acagtgaaat tttctttgtc attctttaag gcattaaaga acagaccgcc
     2521 tgatgtcagt tgtaaaaggc caaaaacggc caaaaccagc agtaagctgg tcacgatctt
     2581 gatacgtttt aacatggttt ctctttcctg tggaccgatg caagattttc ggcttggaaa
     2641 gcaaaaactt tatgaaaagg tgtaacccgc catccatgga aaaaccaggc gctggttatc
     2701 agatactaaa aagttattca ttatcgcccg ggatggcttc ttgtcgggaa ttgcccagag
     2761 caataaattc ctctaacaga tgggttaact gttgcatttt ctcggcagta aactgagctt
     2821 caatctgccg ataggcttct tcaatctgtg tctgagcgcg gttatacagc gcctgcccct
     2881 ctttggttag cgagatatag agcttccgct gatcattgat cggctttaat cgcaacacta
     2941 aaccgtcgcg ttccatccgc gtgagaatcc cggtcaggct tgggcgcaaa atgcaggcgc
     3001 gatacgccag atcgtgaaaa tccattgatg ggctttccgc cagaatacgc acgatgcgcc
     3061 actgttgctc agtcaaatta tgccgtttaa cgattgggcg aaaataactc atcgccgctt
     3121 ctcgcgcctg gagcaacgca atggttagtg agtcgtgcat tatctttccc ctgaaaaatt
     3181 caaaatcatt aatatagaaa cagttaatcg tcacgttacc gggactgcgc tgcccctgca
     3241 attcctgatt ttatcaaaat tgatgatatt ttattaactt actgatattt aatattttat
     3301 tatctttaaa tgtaaatagt ttgttaatta gatcacattt acatcactta cttttgccaa
     3361 actacgcaat cgggaataaa agcaatcatt aacatattaa tgattaagat aatcgaatcc
     3421 gaggagtggt aatgaaaggc actatcttcg ccgtagcgtt gaaccatcgc agccaacttg
     3481 atgcatggca ggaagcgttc cagcaatccc cctacaaagc cccgcctaaa actgcggtct
     3541 ggtttattaa accgcgcaat acggtgattg gttgcggtga accgattccc tttccacagg
     3601 gtgaaaaggt actgagcggt gcgactgttg cgctgattgt gggaaaaacg gcgacgaaag
     3661 tacgtgaaga agatgcggca gagtacatcg ccggatatgc gctggctaac gacgtcagcc
     3721 tgccggaaga gagcttttac cgcccggcaa tcaaagcaaa atgtcgtgat ggattctgcc
     3781 ccattggcga aaccgtggct ctcagcaatg tcgataatct gaccatctat accgagatca
     3841 acgggcgtcc tgccgatcac tggaataccg ccgatttaca acgtaacgcc gcgcagttgc
     3901 tgagcgccct gagcgaattt gccacgctga atccaggcga cgccattctg ctcggcacgc
     3961 cacaggcgcg cgtggaaata cagccaggcg atcgcgttcg tgttctcgca gaaggtttcc
     4021 cgccgctgga aaatccggta gtggacgaac gtgaagtgac cacgcgcaag agcttcccaa
     4081 cgcagccaca cccgcacggc acgctgtttg ccctcggcct gaactacgcc gaccacgcca
     4141 gcgaactgga atttaagcca ccggaagaac cgctggtatt cctgaaagcg ccaaataccc
     4201 tcactggcga taaccagacc tccgtgcgtc caaacaatat tgaatacatg cactatgaag
     4261 cggagctggt ggtagttatt ggcaaacagg cgcgtaacgt cagcgaagcc gatgccatgg
     4321 attatgtcgc gggctacacc gtgtgtaacg actacgccat tcgtgactat ctggaaaact
     4381 actaccgccc taacctgcgg gtaaaaagcc gcgacggact gacgccgatg ctttcaacca
     4441 tcgtgccgaa agaggcgatc ccggacccgc ataatctgac ccttcgcacc ttcgtcaacg
     4501 gcgagttacg ccagcaaggc accaccgccg atctgatctt cagcgtgccc ttcctgatcg
     4561 cctacttaag tgaatttatg accctgaatc cgggcgacat gatcgccacc ggcacaccca
     4621 aaggcttatc tgacgtggtg cctggcgatg aagtagtggt ggaagtagaa ggcgtgggcc
     4681 gcctggtgaa ccgaattgtg agtgaggata cagcgaaatg aaaaaagtaa atcattggat
     4741 caacggcaaa aatgttgcag gtaacgacta cttccagacc accaatccgg caacgggtga
     4801 agtgctggcg gatgtggcct ctggcggtga agcggagatc aatcaggcgg tagcggcagc
     4861 gaaagaggcg ttcccgaaat gggccaatct gccgatgaaa gagcgtgcgc gcctgatgcg
     4921 ccgtctgggc gatctgatcg accagaacgt gccagagatc gccgcgatgg aaaccgcgga
     4981 caccggcctg ccgatccatc agaccaaaaa tgtgttgatc ccacgcgctt cccacaactt
     5041 tgaatttttc gcggaagtct gccagcagat gaacggcaag acctatccgg ttgacgacaa
     5101 gatgctcaac tacacgctgg tgcagccggt gggcgtttgt gcgctggtat cgccgtggaa
     5161 cgtaccgttt atgaccgcca catggaaggt cgcgccgtgt ctggcgctgg gcaataccgc
     5221 ggtactgaaa atgtcggaac tctccccgct gaccgcctgg gtgagctggc gctggaagcc
     5281 ggtattccgg caggcgtgct gaacgtggta cagggctacg gcgcaaccgc aggggatgcg
     5341 ctggttcgtg atcatgacgt acgtgccgtg tcgttcaccg gcggtacggc caccgggcgc
     5401 aacatcatga aaaacgccgg gctgaaaaaa tactccatgg aactgggcgg taaatcgccg
     5461 gtgctgattt ttgaagatgc cgatattgaa cgcgcgctgg acgccgccct gttcaccatc
     5521 ttctcgatca acggcgaacg ctgcaccgcc ggttcacgca tctttattca gcaaagcatc
     5581 tacccggaat tcgttaaacg ctttgccgaa cgcgccaacc gtctgcgcgt cggcgatccg
     5641 aacgatccga atacccaggt tggcgcgctt atcagccagc agcactggga aaaagtctcc
     5701 ggctatatcc gtctcggcat tgaagaaggc gccaccctgc tggcgggcgg cccggataaa
     5761 ccgtctgacc tgcctgcaca cctgaaaggc ggcaacttcc tgcgcccaac ggtgctggca
     5821 gacgttgata accgtatgcg agtcgcccaa gaagagattt tcgggccggt cgcctgcctg
     5881 ctgccgttta aagacgaagc tgaaggctta cgcctggcaa acgacgtgga gtacggcctc
     5941 gcgtcgtaca tctggacaca ggatgtcagc aaagtgttac gcctggcgcg tggcattgaa
     6001 gctggcatgg tgttcgtcaa cacccagaac gtgcgtgacc tgcgccagcc atttggcggc
     6061 gtaaaagcct ccggcaccgg gcgtgaaggc ggtgagtaca gcttcgaagt gttcgcggaa
     6121 atgaagaacg tctgcatttc catgggcgac catccaattc cgaaatgggg agtctgatat
     6181 gggtaagtta gcgttagccg ccaagatcac gcacgtaccg tcgatgtatc tctctgaact
     6241 gccagggaaa aaccacggtt gccgccaggg cgcgatcgac gggcataaag agatcagcaa
     6301 gcgttgccgg gaaatgggcg tcgataccat tatcgttttc gatacccact ggctggtcaa
     6361 cagtgcttat cacatcaact gtgcagacca ttttgaaggc gtctacacca gcaacgagct
     6421 gccgcatttt atccgcgata tgacctacaa ctacgagggc aacccggagt tggggcagct
     6481 tattgccgat gaagccttaa agctcggcgt gcgggcaaaa gcgcacaaca ttcccagcct
     6541 gaaactggaa tacggcacgc tggtgccgat gcgctacatg aatgaagaca agcacttcaa
     6601 agtggtctcc atttcggctt tctgcacggt tcacgatttt gccgacagcc gcaagctggg
     6661 cgaagcgatt ctgaaagcga tcgaacagta cgacggcacc gtggcggtcc ttgccagcgg
     6721 ttcgttatcg caccgcttta ttgacgatca gcgtgcagaa gaagggatga acagctacac
     6781 ccgcgagttc gaccgccaga tggacgagcg cgtggtgaag ttgtggcgcg aaggccagtt
     6841 caaagagttc tgcaatatgc tgccggagta cgccgactac tgctacggcg aaggcaatat
     6901 gcacgacacg gtgatgctgc tggggatgct cggctgggat aaatacgacg gcaaggtgga
     6961 gtttatcacc gagctattcc caagctctgg caccggtcag gttaacgctg ttttcccgct
     7021 tcccgcgtaa ggacgtttta tgccgcactt tatcgttgaa tgcagtgaca acatccgcga
     7081 agaagccgac ctgccggggt tgttcgccaa agtgaatccg acgctggcag ccacgggtat
     7141 ttttccgctg gcgggtattc gcagccgcgt gcattgggtc gatacctggc agatggccga
     7201 cgggcagcgt gattatgcct tcgtgcatat gacgttgaaa atcggcgcag gtcgcagcct
     7261 ggaaagccgt cagcaggcgg gtgaaatgct gtttgaactg attaaaacgc acttcgccgc
     7321 cctgatggag agccgcctgc tggcgttgtc gtttgagatt gaagagctgc atccgacgct
     7381 gaattttaaa caaaacaacg tgcacgcatt gtttaagtag cgcgcagatt gcccggtggc
     7441 gctgcgctta ccgggcctac aaaaccccaa accgtacacc gtaggccgga taaggcgcag
     7501 ccgcatccgg caatgccaca ggatatcgct atgttcgata aacacaccca caccctgatc
     7561 gcccagcgtc tggatcaggc agaaaaacag cgcgaacaga tccgcgcgat ctcgctggat
     7621 tacccagaga tcaccatcga agacgcttac gcggtgcagc gcgaatgggt tcgcctgaaa
     7681 atcgccgaag gccgtacgct gaaaggccac aaaatcggtc tgacctcaaa agcaatgcag
     7741 gccagctcgc agatcagcga accagattac ggtgccctgc tggatgacat gttcttccac
     7801 gatggcagcg atatcccgac cgatcgcttt atcgtgccgc gcattgaagt ggagctggct
     7861 ttcgtgctgg caaaaccgct gcgtgggcca aactgcacgc tgttcgacgt ctacaacgcc
     7921 acggactacg tgatcccggc gctggagctg atcgacgctc gctgccacaa catcgatccg
     7981 gaaacccagc gcccgcgcaa agtgttcgac accatttctg ataacgccgc caacgccggg
     8041 gtgatcctcg gtggtcgtcc gatcaaacca gacgaactgg atctgcgttg gatctccgcc
     8101 ctgatgtatc gcaatggcgt gattgaagaa accggcgtcg ccgctggcgt gctgaatcat
     8161 ccggcaaacg gcgtggcctg gctggcgaac aaactcgcac cgtatgacgt acaactggaa
     8221 gccgggcaaa tcattctcgg tggttcgttc acccgcccgg ttccggcgcg taagggcgac
     8281 accttccacg tcgattacgg caacatgggt tccattagct gccgctttgt ttaaggagag
     8341 aacgatggaa aacagcttta aagcggcgct gaaagcaggc cgtccgcaga tcggattatg
     8401 gctggggctg agtagcagct acagcgcaga gttactggcc ggagcaggat tcgactggtt
     8461 gttgagcgac ggtgagcacg cgccgaataa cgtgcaaacc gtgctcaccc agctacaggc
     8521 gattgcgccc taccccagcc agccggtagt acgtccgtcg tggaacgatc cggtgcaaat
     8581 caaacaactg ctggacgtcg gcacacaaac cttgctggtg ccgatggtac aaaacgctga
     8641 cgaagcccgt gaagcggtac acgccacccg ttatcccccc gccggtattc gcggtgtggg
     8701 cagtgcgctg gcccgcgcct cgcgctggaa tcgtattcct gattacctgc aaaaagccaa
     8761 cgatcaaatg tgcgtgctgg tgcagatcga aacgcgtgag gcaatgaaga acttaccgca
     8821 gattctggac gtggaaggcg tcgacggcgt gtttatcggc ccggcggatc tgagcgccga
     8881 tatgggttat gccggtaatc cgcagcaccc ggaagtacag gccgccattg agcaggcgat
     8941 cgtgcagatc cgtgaatcgg gcaaagcgcc ggggatcctg atcgccaatg agcaactggc
     9001 aaaacgctat ctggaactgg gcgcgctgtt tgtcgccgtc ggcgttgaca ccaccctgct
     9061 cgcccgcgcc gctgaagcgc tggcagcacg gtttggtgcg caggccaccg ccgtgaagcc
     9121 cggcgtgtat taatgccgga tgcgctgcac ttatccggcc tacactcgca ccaaaccgta
     9181 ggccggataa ggcgtttacg ccgcatccgg caaaaagccg taccaaatcg cggaccggat
     9241 aaggcgttac gccgcatccg ccataaacct tgtcgtaccc tacaaaaatc ccattagagg
     9301 aagaaaaatg agcgacacct cacctgccat accggagagt atcgatccgg cgaatcagca
     9361 taaagcgctg actgccggac aacaggcggt tattaagaag ctatttcgcc gcctgatcgt
     9421 ctttctgttc gtgctgttta tcttctcgtt ccttgatcgc atcaacatcg gctttgccgg
     9481 actcacgatg ggacgcgacc tcggtctgag cgccaccatg tttggcctcg ctaccaccct
     9541 gttctatgcc gcttatgtca tcttcggcat tcccagcaac attatgctga gtattgtcgg
     9601 tgcgcggcgc tggatcgcca ccatcatggt gctctggggc atcgcctcta ctgccaccat
     9661 gtttgccact ggccccacca gcttgtacgt actgcgtata ctggttggca ttaccgaagc
     9721 cggctttctg cctggtattc tgctgtattt aaccttctgg tttccggcct atttccgcgc
     9781 ccgtgccaac gccttgttta tggtagcaat gccggtaacg acagcgttgg gctcgatcgt
     9841 ttccggctac attttgtcgc tggatggcgt catggcatta aaaggctggc agtggctgtt
     9901 tttgctggaa ggcttcccgt cggtattact cggcgtcatg gtgtggttct ggcttgatga
     9961 ctcaccggac aaagctaagt ggctgacgaa agaagacaaa aaatgcctgc aagagatgat
    10021 ggataacgat cgtctgacgc tggttcagcc agagggagcc atcagccacc acgccatgca
    10081 acaacgcagt atgtggcggg agatcttcac tccggtggtg atgatgtata ccctggcgta
    10141 tttctgcctg accaacacac ttagtgcgat cagcatctgg acaccgcaga tcctgcaaag
    10201 ttttaatcag ggcagcagta atatcaccat cggcctgctg gccgccgtac cgcagatttg
    10261 taccattctc gggatggtct actggagccg tcactcagat cgccgccagg aacgaaggca
    10321 tcacaccgcc cttccttatt tgttcgctgc cgcaggttgg ttactggctt cggcaactga
    10381 tcacaacatg atccagatgc tggggatcat tatggcttcg accggatcat tcagcgcaat
    10441 ggcgattttc tggacaacac cggatcagtc catcagcctg cgggcacgag cgatcggtat
    10501 tgcggtgatc aacgccactg gcaacattgg ttcagcgtta agtccgttta tgatcggctg
    10561 gttgaaagat ttgaccggca gctttaacag tggattgtgg tttgttgccg cgctgctggt
    10621 gattggtgcg gggattatct gggcgattcc aatgcagtcc tcccgtccgc gagcgacccc
    10681 gtaaggaacg acgatgtgtg accgtcagat tgccaatatt gatatcagca aagagtacga
    10741 tgaaagcctg ggcacggacg atgtgcatta tcagtcgttc gcccgcatgg cggcattttt
    10801 tggccgccat atgctgccac atcgccacga acagtacttt cagatgcatt tcctcaatag
    10861 cggacagatt gagctacagc ttgacgatca tcgctactcg gtggaagcgc ccctgtttgt
    10921 cctgacgccg ccgtcagtac ctcatgcgtt tattacggag tctgacgccg acggtcatgt
    10981 gttgacggta cgggaagatc tgatctggcc cctgctggaa gttctttatc cgggcactcg
    11041 ggaaaccttc ggcctgccgg gggcctgtca ctggcagata aacccgacga actggcggcg
    11101 ctggaacact attggcaact gatagagcgg gaatcggtgg aacaactgcc tggacgggaa
    11161 cacaccctga cgttactggc acaggcagtg ttcaccctac tgctgcgtaa cgcaaaactc
    11221 gacgaccatg ccgccagcgg gatgcgcgga gaattaaaac tgttccagcg ttttaatatg
    11281 ctgattgaaa gccattttca tcagcactgg acagtaccgg attacgctaa cgaactgcat
    11341 atcaccgaat cacgactcac ggacatctgc cgtcgctttg ccaaccgtcc gccaaaacgg
    11401 ttgattttcg acaggcagct gcgagaagcc aagcggctgc tgctgttttc tgataacgcc
    11461 gtgaacaata ttgcctggca actcggtttt aaggatccgg cttattttgc gcgctttttt
    11521 aatcgcttag tcggttgctc gcccagtgct tatcgcgcca aaaaagtacc tgtgacgtga
    11581 aaatccctta gccttaacgg gaaaccaggc accacctgct attccccttt ctccgcctgg
    11641 agcaagggga tttagtaacg tcaaaaatcg ctaaaagcga cctcgatcac aaaaccgtac
    11701 ccgacctgaa aagtaccagc cattgtccca aaagtctctt cccgtaatcg cccctgcaag
    11761 ctttaattga ataacaaaaa caacacacaa aattaacaat cgtattccga ttaatactgt
    11821 agaggtcgac atgaaaccag aagatttccg cgccagtacc caacgtccgt tcaccgggga
    11881 agagtatctg aaaagcctgc aggatggtcg cgagatctat atctatggcg agcgagtgaa
    11941 agacgtcact actcatccgg catttcgtaa tgcggcagcg tctgttgccc aactgtacga
    12001 cgcgctacac aaaccggaga tgcaggactc tctgtgctgg aacaccgaca ccggcagcgg
    12061 cggctatacc cataaattct tccgcgtggc gaaaagtgcc aacgacctgc gccagcaacg
    12121 cgatgccatc gctgagtggt cacgcctgag ctatggctgg atgggccgta ccccagacta
    12181 caaagctgct ttcggttgcg cactgggcgc gaatccgggc ttttacggtc agttcgagca
    12241 gaacgcccgt aactggtaca cccgtattca ggaaactggc ctctacttta accacgcgat
    12301 tgttaaccca ccgatcgatc gtcatttgcc gaccgataaa gtaaaagacg tttacatcaa
    12361 gctggaaaaa gagactgacg ccgggattat cgtcagcggt gcgaaagtgg ttgccaccaa
    12421 ctcggcgctg actcactaca acatgattgg cttcggctcg gcacaagtga tgggcgaaaa
    12481 cccggacttc gcactgatgt tcgttgcgcc aatggatgcc gatggcgtaa aattaatctc
    12541 tcgcgcctct tatgagatgg tcgcgggtgc taccggctcg ccatacgact acccgctctc
    12601 cagccgcttc gatgagaacg atgcgattct ggtgatggat aacgtgctga tcccatggga
    12661 aaacgtactg atctaccgcg atttcgatcg ctgccgtcgc tggacaatgg aaggcggttt
    12721 tgcccgtatg tatccgctgc aagcctgtgt gcgcctggca gtgaaattag acttcattac
    12781 agcactgctg aaaaaatcac tcgaatgtac cggcaccctg gagttccgtg gtgtacaggc
    12841 cgatctcggt gaagtggtgg cgtggcgcaa caccttctgg gcattgagtg actcgatgtg
    12901 ttctgaagcg acgccgtggg tcaacggggc ttatttaccg gatcatgccg cactgcaaac
    12961 ctatcgcgta ctggcaccaa tggcctacgc gaagatcaaa aacattatcg aacgcaacgt
    13021 taccagtggc ctgatctatc tcccttccag tgcccgtgac ctgaacaatc cgcagatcga
    13081 ccagtatctg gcgaagtatg tgcgcggttc gaatggtatg gatcacgtcc agcacatcaa
    13141 gatcctcaaa ctgatgtggg acgccattgg cagcgagttt ggtggtcgcc acgaactgta
    13201 tgaaatcaac tactccggta gccaggatga gattcgcctg cagtgtctgc gccaggcaca
    13261 aagctccggc aatatggaca agatgatggc gatggttgat cgctgcctgt cggaatacga
    13321 ccagaacggc tggactgtgc cgcacttgca caacaacgac gatatcaaca tgctggataa
    13381 gctgctgaaa taacgcagca ggaggttaag atgcaattag atgaacagcg cctgcgcttt
    13441 cgtgacgcga tggccagcct gtcggcagcg gtaaatatta tcaccaccga gggcgacgcc
    13501 ggacaatgcg ggattacggc aacggccgtc tgctcggtca cggatacacc accatcgctg
    13561 atggtgtgca ttaacgccaa cagtgcgatg aacccggttt ttcagggcaa cggtaagttg
    13621 tgcgtcaacg tcctcaacca tgagcaggaa ctgatggcac gccacttcgc gggcatgaca
    13681 ggcatggcga tggaagagcg ttttagcctc tcatgctggc aaaaaggtcc gctggcgcag
    13741 ccggtgctga aaggttcgct ggccagtctt gaaggtgaga tccgcgatgt gcaggcaatt
    13801 ggcacacatc tggtgtatct ggtggagatt aaaaacatca tcctcagtgc agaaggtcac
    13861 ggacttatct actttaaacg ccgtttccat ccagtgatgc tggaaatgga agctgcgatt
    13921 taagctccag ccccttcacg tattcgtcga aggggcattt ttattgtgat ctcaatcaca
    13981 tatccacccg atgaataatt cttgcccaac cgctcaccgc cattcctgac cgcttacgtc
    14041 cctaaaataa ccactcagtt atttacctta ctttacgcgc gcgtaactct ggcaacatca
    14101 ctgcaggata gcggtcaatt tacctcctca aacgcaacgc aaacctagaa cggcttcggc
    14161 ctatgattaa caaattactc tatgaatttt ggtttgcagg aaggcagcaa gtgagtgaat
    14221 ccccgggagc ttacaacagt aagtgacaga ggtgaacgaa cgcagctgcc gcacctgtaa
    14281 gccaaaagac gacgagtaaa atgccaggtt ttactatgga tacgaaaaaa ctattcaagc
    14341 acataccctg ggtgattctc ggaatcatcg gtgcattctg cctcgcggta gttgcattac
    14401 gtcgggggga gcacgtcagc gccctgtgga tcgtggtcgc ctctgtgtcg gtgtatctgg
    14461 tggcgtatcg ctactacagt ctgtacatcg cccagaaggt gatgaaactc gaccccacgc
    14521 gcgcgacgcc tgcggttatt aacaacgacg gtctgaacta cgttccgacc aaccgttacg
    14581 tgttgtttgg tcaccacttc gccgctatcg ccggtgccgg tccgctggtt ggtccggtgc
    14641 tcgccgcgca gatgggctac ctgcctggca cgctgtggct gctggcgggg gtagtactgg
    14701 ccggtgcggt tcaggacttt atggtgctgt ttatctcctc tcgccgtaac ggcgcatctc
    14761 tcggtgagat gatcaaagaa gagatgggac cagtaccggg gactatcgcg ctgtttggct
    14821 gtttcttaat catgatcatc atcctcgccg ttctggcgct gattgtggtt aaagccctgg
    14881 ccgaaagtcc gtggggtgtc ttcaccgttt gctcaaccgt accgattgcg ctgtttatgg
    14941 gtatctacat gcgctttatc cgtccggggc gtgtaggtga agtttctgtt attggtatcg
    15001 tgctgctggt tgcctctatc tatttcggtg gcgtgattgc tcacgatccg tactggggtc
    15061 cggcactgac ctttaaagac accaccatta ccttcgcgct gattggctat gcgtttgttt
    15121 ccgcactgct gccggtgtgg ctgatcctcg caccgcgcga ctatctggca accttcctga
    15181 aaatcggcgt tatcgtcggc ctggcgctgg gtatcgtggt actgaacccg gaactgaaaa
    15241 tgcctgcaat gacccagtac attgacggta ctggcccgct gtggaaaggc gctctgttcc
    15301 cgttcctgtt catcaccatc gcctgtggtg cggtatctgg cttccacgcg ctgatctctt
    15361 ccggtacgac gccgaaattg ctggctaacg aaaccgacgc gcgtttcatt ggctacggcg
    15421 caatgctaat ggaatccttc gtggcgatta tggcgctggt tgctgcgtcc atcatcgaac
    15481 cgggtcttta cttcgcgatg aataccccgc ctgctggcct tggcatcacc atgcctaacc
    15541 tgcatgaaat gggtggcgag aacgcgccga tcatcatggc gcagctgaaa gacgttaccg
    15601 cacacgcggc ggcgaccgtc agctcctggg gcttcgtgat ttcgccagag cagatcctgc
    15661 aaaccgcgaa agacattggt gagccttctg tcctgaaccg tgcaggtggc gcgccgacgc
    15721 tggcggtagg tatcgctcac gtgttccaca aagtgctgcc gatggctgac atgggcttct
    15781 ggtatcactt cggtattctg ttcgaagccc tgttcatcct gaccgcgctg gatgcgggta
    15841 ctcgttctgg ccgctttatg ctgcaagacc tgctgggtaa cttcatcccg ttcctgaaaa
    15901 aaaccgactc tctggttgcc ggtatcatcg gtactgcggg ctgtgtgggt ctgtggggct
    15961 acctgctgta tcagggcgtg gtcgatccgc tgggcggcgt taagagcctg tggccgctgt
    16021 tcggtatttc caaccagatg ctggcagccg tagcgctggt actgggcacc gttgtgctga
    16081 ttaagatgaa gcgcacccaa tacatctggg taactgttgt tccggctgta tggctgctta
    16141 tctgcaccac ctgggcgctg ggtctgaaac tgttcagcac caacccgcag atggaaggct
    16201 tcttctacat ggcaagccag tacaaagaga agattgctaa cggtactgac ctgacggcgc
    16261 agcagattgc caacatgaac cacatcgttg tgaacaacta caccaacgca ggcctgagta
    16321 ttctgttcct gattgtggtg tacagcatca tcttctacgg tttcaaaacc tggcttgcgg
    16381 tgcgtaacag cgacaaacgt actgacaaag aaactccgta cgttccaatc ccggaaggcg
    16441 gcgtgaagat ctcttcgcac cactaaccgg ttgccggatg cgctgcgcgt atccggccta
    16501 caaagtgtct atcgtaggcc ggataaggcg tttacgccgc atccggcaaa tccctagccc
    16561 ggaccttccg ggctttacgc atatctggaa ggcaaaatgt ttggtaactt aggacaggca
    16621 aaaaaatatc tcggccaggc ggcgaagatg ttgattggca ttccagacta cgacaactac
    16681 gtcgagcata tgaagaccaa ccatcccgac aagccgtaca tgagctatga agaattcttc
    16741 cgcgaacgcc agaacgcgcg ctacggcggc gatggtaaag gcggtatgcg ctgttgttaa
    16801 tggagagagc atgaacccga ttgcagttac cctactcacc ggttttttag gcgcgggcaa
    16861 aaccaccctg ctgcgccata ttcttaacga acaacacggc tacaagattg ccgtgattga
    16921 aaacgaattc ggcgaagtct ccgttgatga tcaactgatt ggcgaccgcg ccacgcagat
    16981 caaaacgctg accaacggct gcatctgctg ttcgcgctcc aacgagctgg aagacgcact
    17041 actcgacctg ctggataatc tcgacaaggg caatattcag ttcgaccgtc tggtcattga
    17101 atgcaccggc atggccgatc ccggcccgat tattcagacc ttcttctccc atgagatttt
    17161 atgccagcgc tacctgctgg acggggtgat tgcgctggtg gatgcggtac atgccgatga
    17221 gcagatgaac cagttcacca tcgcccagtc ccaggttggc tacgccgacc gtattctgct
    17281 gacgaaaacc gacgtcgcag gcgaagcaga gaaactgcgt gaacgcctgg cgcgcatcaa
    17341 cgcccgcgca ccggtctaca ccgttaccca cggcgatatc gacctgggcc ttctgttcaa
    17401 caccaacggt tttatgctgg aagaaaacgt cgtcagcacc aaaccgcgtt tccactttat
    17461 cgcggacaaa caaaacgata tttcgtcgat tgtggtggaa ctggattacc cggtagatat
    17521 cagcgaagtt tcccgggtga tggaaaacct gctgctggaa tcggcggata aactgctgcg
    17581 ttacaaaggg atgctgtgga ttgacggcga acctaaccgc ctgctgttcc agggcgtcca
    17641 gcgcctctac agcgccgact gggaccgccc gtggggcgat gaaaaaccgc atagcacgat
    17701 ggtgtttatc gggattcagt tgccggagga tgagattcgg gcggcgtttg cgggactcaa
    17761 aaagtaacca gccctccaac atcacaatac ctgagacttt atcaccctca tattcctcca
    17821 gaatatgagg gcattcgggc ttaattatct ctgaacgtgc aacacttcct acgactcctt
    17881 atgcgcctcc acatcctgct tcgttaacca gagcgactta cgaccaaaat tttcgtacat
    17941 tttcagctga tcttcatagt gctgatcaac tgttccatcg ggagcaataa acccactctg
    18001 accgggtgcg accacatccc aggcaagcac cggacgatcg cttgtcgttg gtgagaaaac
    18061 aatcatatcg ttttctgttc cacggttttg atactccgcc tgatgacgcg tttcttccgc
    18121 tgcggcctgc ggtacatcaa agaaattatt tgcccggaac gttaaggcca ttgcaggtgt
    18181 tttccagtta ctcacattat tgccatagcg tttggaaaga gtctcccagg tatcttccag
    18241 cgcagccaac acaacctcct gctgtggttt cccagcaaac agatcaaccg cctgtgggat
    18301 tggtgatttg tctccctgca ccgcctcata caaaattttt gctccaacac ttatattcag
    18361 cgaaccagtt gggccgtcct gggttgtttc gtagccactg gcgctgtacc acttatcaaa
    18421 tggcataggt acggcagcca ctacggtacg cttcaacata ctggtcagcc aaacgttcag
    18481 gatggcagag cctggc
//
LOCUS       DADMJB010000076        18354 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.076, whole genome shotgun sequence.
ACCESSION   DADMJB010000076 DADMJB010000000
VERSION     DADMJB010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 18354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18354
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.076"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..321)
                     /locus_tag="JN078_002289"
     CDS             complement(<1..321)
                     /locus_tag="JN078_002289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707676.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbL family protein"
                     /protein_id="HAY9041477.1"
                     /translation="MMKKTLLLCAFLVGLVSSNVMALTLDEARTQGRVGETFYGYLVA
                     LKTDAETEKLVTDINAERKASYQQLAKQNNVSVDDIAKLAGQKLVARAKPGEYVQGIN
                     GKWVR"
     gene            complement(326..511)
                     /locus_tag="JN078_002290"
     CDS             complement(326..511)
                     /locus_tag="JN078_002290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnbE family lipoprotein"
                     /protein_id="HAY9041478.1"
                     /translation="MKILLAALTSSFMLAACTPRIEVAAPKEPITINMNVKIEHEIII
                     KADKDVEELLETRSDLY"
     gene            complement(508..3147)
                     /locus_tag="JN078_002291"
     CDS             complement(508..3147)
                     /locus_tag="JN078_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbH family protein"
                     /protein_id="HAY9041479.1"
                     /translation="MLGKYKAVLALLLLIILVPLTLLMTLGLWVPTLAGIWLPLGTRI
                     ALDESPRITRKGLIIPDLRYLVGDCQLAHITNASLSHPSRWLLNVGTVELDSACLAKL
                     PQTEQSPAAPKTLAQWQSMLPNTWINIDKLIFSPWQEWQGKLSLALTSDIQQLRYQGE
                     KVKFQGQLKGQQLTVSELDVIAFEYQPPVKLVGEFTMPLVPDGLPVSGHATATLNLPQ
                     EPSLVDAELDWQENSGQLIVLARDNGDPLLDLPWQITRQQLTVSDGRWSWPYAGFPLS
                     GRLGVKVDNWQAGLENALISGRLSVLTQGQAGKGNAVLNFGPGKLSMDNSQLPLQLTG
                     EAKQADLILYARLPAQLSGSLTDPTLAFEPGALLRSKGRVIDSLDIDEIRWPLAGVKV
                     TQRGVDGRLQAILQAHENELGDFVLHMDGLANDFLPDAGRWQWRYWGKGSFTPMNATW
                     DVAGKGEWHDSTITLTDLSTGFDQLQYGTMTVEKPRLILDKPVVWVRDAQHPSFSGAL
                     SLDAGQTLFTGGSVLPPSTLKFSVDGRDPTYFLFKGDLHAGEIGPVRVNGRWDGIRLR
                     GNAWWPKQSLTVFQPLVPPDWKMNLRDGELYAQVAFSAAPEQGFRAGGHGVLKGGSAW
                     MPDNQVNGVDFVLPFRFADGAWHLGTRGPVTLRIAEVINLVTAKNITADLQGRYPWTE
                     EEPLLLTDVSVDVLGGNVLMKQLRMPQHDPALLRLNNLSSSELVSAVNPKQFAMSGAF
                     SGALPLWLNNEKWIVKDGWLANSGPMTLRLDKDTADAVVKDNMTAGSAINWLRYMEIS
                     RSSTNINLDNLGLLTMQANITGTSRVDGKSGTVNLNYHHEENIFTLWRSLRFGDNLQA
                     WLEQNARLPGNDCPQGKECEEKQ"
     gene            3355..4344
                     /gene="ldhA"
                     /locus_tag="JN078_002292"
     CDS             3355..4344
                     /gene="ldhA"
                     /locus_tag="JN078_002292"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HAY9041480.1"
                     /translation="MKLAVYSTKQYDKKYLQQVNESFGFELEFFDFLLTEKTAKTANG
                     CEAVCIFVNDDGSRPVLEELKKHGVKYIALRCAGFNNVDLDAAKELGLKVVRVPAYDP
                     EAVAEHAIGMMMTLNRRIHRAYQRTRDANFSLEGLTGFTMYGKTAGVIGTGKIGVAML
                     RILKGFGMRLLAFDPYPSAAALELGVEYVDLPTLFSESDVISLHCPLTPANYHLLNEA
                     AFDQMKNGVMIVNTSRGALIDSQAAIEALKNQKIGSLGMDVYENERDLFFEDKSNDVI
                     QDDVFRRLSACHNVLFTGHQAFLTAEALTSISQTTLQNLSNLEKGETCPNELV"
     gene            4455..4877
                     /gene="hslJ"
                     /locus_tag="JN078_002293"
     CDS             4455..4877
                     /gene="hslJ"
                     /locus_tag="JN078_002293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock protein HslJ"
                     /protein_id="HAY9041481.1"
                     /translation="MKKVAAFVALSLLMAGCVSNDKIAVTPEQLQHHRFVLESVNGKP
                     VTSDKNPPEISFGEKMMISGSMCNRFSGEGKLSNGELTAKGLAMTRMMCANPQLNELD
                     NTISEMLKEGAQVDLTANQLTLATAKQTLTYKLADLMN"
     gene            complement(4874..5140)
                     /locus_tag="JN078_002294"
     CDS             complement(4874..5140)
                     /locus_tag="JN078_002294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015964583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF333 domain-containing protein"
                     /protein_id="HAY9041482.1"
                     /translation="MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEA
                     NCAMIGGSLSVARQLDGTAIGMCALPNGKRCSEQSLAAGSCGSY"
     gene            5414..8938
                     /gene="nifJ"
                     /locus_tag="JN078_002295"
     CDS             5414..8938
                     /gene="nifJ"
                     /locus_tag="JN078_002295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HAY9041483.1"
                     /translation="MITIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGL
                     KNVWGDTPRVVEMQSEAGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTP
                     FVLHVAARTVATHALSIFGDHSDVMAVRQTGCAMLCAANVQEAQDFALISHIATLKSR
                     VPFIHFFDGFRTSHEINKIVPLADDTILDLMPQAEIDAHRARALNPEHPVIRGTSANP
                     DSYFQSREATNPWYNAVYDHVEQAMNDFSAATGRQYQPFEYYGHPQAERVIILMGSAI
                     GTCEEVVDELLTRGEKVGVLKVRLYRPFSAKHLLQTLPGSVRSVAVLDRTKEPGAQAE
                     PLYLDVMTALAEAFNNGKRETLPRVIGGRYGLSSKEFGPDCVLAVFAELNAAKPKARF
                     TVGIYDDVTNLSLPLPENTQPNSAKLEALFYGLGSDGSVSATKNNIKIIGNSTPWYAQ
                     GYFVYDSKKAGGLTVSHLRVSEQPIRSAYLISQADFVGCHQLQFIDKYQMAERLKPGG
                     IFLLNTPYSADEVWSRLPQEVQAVLNQKKARFYVINAAKIARECGLAARINTVMQMAF
                     FHLTQILPGDSALAELQGAIAKSYSSKGQDLVEGNWQALALARESVEEVPLQPVNPHS
                     ANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALPPDGTWPMGTTRWEKRNIAEEIP
                     IWKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQV
                     APEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEEKINYDFFLNLPEIDRSKL
                     ERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRMLIANATGCSSIYGGNLP
                     STPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRLLDQFADKIPAELLT
                     ALKSDATPEVRREQVAALRQQLNDVAEAHELLRDADALVEKSIWLIGGDGWAYDIGFG
                     GLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRKARKDLGVSMM
                     MYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLALSHDQMRQL
                     TATGFWPLYRFDPRRADEGKLPLALDSRPPSEALEETLLHEQRFRRLNSQQPEVAEQL
                     WKDAAADLQKRYDFLAQMAGKAEKSNTD"
     gene            9304..10437
                     /gene="ompN"
                     /locus_tag="JN078_002296"
     CDS             9304..10437
                     /gene="ompN"
                     /locus_tag="JN078_002296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpN"
                     /protein_id="HAY9041484.1"
                     /translation="MKSKVLALLIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYF
                     SDNSAKDGDQSYARLGFKGETQINDQLTGYGQWEYNIQANNTESSKNQSWTRLAFAGL
                     KFADYGSFDYGRNYGVMYDIEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFF
                     GLVNGLNFAVQYQGNNEGASNGQEGTNNGRDVRHENGDGWGFSTTYDLGMGFSAGAAY
                     TSSDRTNDQVNHTAAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVAN
                     KTQNFEVTAQYQFDFGLRPAVSFLMSKGRDLHAAGGADNPAGVDDKDLVKYADVGATY
                     YFNKNMSTYVDYKINLLDEDDSFYAANGISTDDIVALGLVYQF"
     gene            10578..11012
                     /gene="uspF"
                     /locus_tag="JN078_002297"
     CDS             10578..11012
                     /gene="uspF"
                     /locus_tag="JN078_002297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310024.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspF"
                     /protein_id="HAY9041485.1"
                     /translation="MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSL
                     PYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKLPTDRVHVHVEEGSPKDRILEL
                     AKKIPAHMIIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR"
     gene            11593..12483
                     /gene="sitA"
                     /locus_tag="JN078_002298"
     CDS             11593..12483
                     /gene="sitA"
                     /locus_tag="JN078_002298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707262.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter substrate-binding
                     protein SitA"
                     /protein_id="HAY9041486.1"
                     /translation="MLLGCLALTCSIAFQASATEKFKVITTFTIIADMAKNVAGDAAE
                     VSSITKPGAEIHEYQPTPGDIKRAQGAQLILANGMNLELWFQRFYQHLNGVPEVIVSS
                     GVTPVGITEGPYEGKPNPHAWMSPDNALIYVDNIRDALIKYDPANAQTYQRNADTYKA
                     KITQTLAPLRKQITELPENQRWMVTSEGAFSYLARDLGLKELYLWPINADQQGTPQQV
                     RKVVDIVKKNHIPAVFSESTISDKPARQVARETGAHYGGVLYVDSLSTENGPVPTYID
                     LLKVTTSTLVQGIKAGKREK"
     gene            12483..13310
                     /gene="sitB"
                     /locus_tag="JN078_002299"
     CDS             12483..13310
                     /gene="sitB"
                     /locus_tag="JN078_002299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter ATP-binding
                     protein SitB"
                     /protein_id="HAY9041487.1"
                     /translation="MMQSAGIVVNDVTVTWRNGHTALRDASFTVPSGSIAALVGVNGS
                     GKSTLFKAIMGFVRLTSGKISVLGIPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVM
                     MGRYGYMGMLRIAKKRDRQIVTDALERVDMVDFRHRQIGELSGGQKKRVFLARAIAQQ
                     GDVILLDEPFTGVDVKTEAKIISLLRELRAEGKTMLVSTHNLGSVTTFCDYTVMVKGT
                     VLASGPTDTTFTAENLELAFSGVLRHVTLNGSEESIITDDERPFVAHRPSAVQREAR"
     gene            13307..14164
                     /gene="sitC"
                     /locus_tag="JN078_002300"
     CDS             13307..14164
                     /gene="sitC"
                     /locus_tag="JN078_002300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter permease subunit
                     SitC"
                     /protein_id="HAY9041488.1"
                     /translation="MNVLLEPFSYEYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGD
                     ALSHSIVPGVAGAYMLGLPFSLGAFFSGGLAAGSMLFLNQRTRLKEDAIIGLIFSSFF
                     GLGLFMVSLNPTSVNIQTIVLGNILAIDPADILQLTIIGILSIIVLFFKWKDLMVTFF
                     DENHARAIGLHPGRLKILFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFP
                     RLLIIAVTIGSVTSFLGAWVSYFLDGATGGIIVVAQTLLFLLAFVFAPTHGLLANRRR
                     AHKALEDRS"
     gene            14161..15018
                     /gene="sitD"
                     /locus_tag="JN078_002301"
     CDS             14161..15018
                     /gene="sitD"
                     /locus_tag="JN078_002301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter permease subunit
                     SitD"
                     /protein_id="HAY9041489.1"
                     /translation="MMALLLEPLQFTFMSHALLISLVVSIPCALLSVFLVLKGWALMG
                     DAMSHAVFPGIVLTWILGLPLATGAFVAGVFCAVATGYLKDNSRIKQDTVMGIVFSGM
                     FAAGLILYIAIKPDVHLDHILFGDMLGITIGDIIQTVIIAGLVTLVISVKWRDFLLFS
                     FDYQQAQVSGLHTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTQRF
                     HIALLLATGISVIVSMTGVWLSFFIDSAPAPTIVVLFAVVFIMTFTVTSINARTKGNA
                     HTQDLLSPN"
     gene            complement(15346..16119)
                     /locus_tag="JN078_002302"
                     /pseudo
     CDS             complement(15346..16119)
                     /locus_tag="JN078_002302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611684.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66-like element ISSfl3 family transposase"
     gene            complement(16125..16637)
                     /locus_tag="JN078_002303"
                     /pseudo
     CDS             complement(16125..16637)
                     /locus_tag="JN078_002303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309983.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1367 family protein"
     gene            complement(16676..16963)
                     /locus_tag="JN078_002304"
     CDS             complement(16676..16963)
                     /locus_tag="JN078_002304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041490.1"
                     /translation="MKIEELREIFSENGLYAVRVENGAIVSHCRIRCLQSQQRKSGAV
                     LFYFCNGLLTDGFILREDEFVTSLRVLKEIGFKAGFLLLLKNKLIYNLEQD"
     gene            complement(17213..17425)
                     /locus_tag="JN078_002305"
     CDS             complement(17213..17425)
                     /locus_tag="JN078_002305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Hok family toxin"
                     /protein_id="HAY9041491.1"
                     /translation="MLCTCRLASYMPKGKEKQAMKQQKAMLIALIVICLTVIVTALVT
                     RKDLCEVRIRTGQTEVAVFVDYESRK"
     gene            complement(17596..18261)
                     /locus_tag="JN078_002306"
     CDS             complement(17596..18261)
                     /locus_tag="JN078_002306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HAY9041492.1"
                     /translation="MTVADFKRPKLELPNGANKLLLHSCCAPCSGEVMEALQASGIDY
                     TIFFYNPNIHPQKEYLIRKDENIRFAEQHGVPFIDADYDTDNWFERAKGMEWEPERGI
                     RCTMCFDMRFERTALYAAENGFSVISSSLGISRWKNMQQVNDCGRRAVAHYPGMVYWD
                     YNWRKQGGSSRMIEISKREKFYQQEYCGCVYSLRDTNLHRKSQGRPLIKIGQLHYGKE
                     EKE"
BASE COUNT         4563 a         4680 c         4399 g         4712 t
ORIGIN      
        1 tcgtacccat ttaccgttta tcccttgtac atattccccc ggtttggccc gagctacgag
       61 cttttgcccg gcgagtttcg cgatatcatc tacagacaca ttattttgct ttgccagttg
      121 ttggtaactc gctttacgtt cggcattaat gtcggttact aatttctctg tttcagcatc
      181 cgttttcagc gcaaccagat aaccataaaa tgtttccccg acccgcccct gcgttctggc
      241 ttcatccaga gtcaatgcca ttacattgct gcttaccagc ccaacaagaa acgcacaaag
      301 aagtaatgtt ttcttcatca tcgcctcagt aaagatcgct acgagtttca agcagctctt
      361 cgacatcttt gtctgccttg atgatgatct catgctcaat tttaacgttc atattgatag
      421 tgatcggttc cttgggcgca gcgacttcaa tacgcggcgt acaggcagcc agcataaaag
      481 atgacgtcaa cgcagccagt aaaattttca ttgtttttcc tcacactctt ttccttgcgg
      541 acagtcattt cccggcagac gtgcgttctg ctccaaccat gcctggagat tatcgccaaa
      601 gcgtaaactg cgccacagcg taaaaatatt ctcttcatga tggtaattaa ggtttaccgt
      661 accgctttta ccatcaacgc gactggtacc tgtaatgttg gcctgcatgg ttaataaacc
      721 gagattatct aaattaatat ttgtcgatga acggctaatt tccatatagc gcaaccagtt
      781 aattgctgaa cccgcagtca tattgtcttt caccaccgca tctgcggtgt ctttatccag
      841 ccgcaaggtc attggcccgc tatttgccag ccaaccatct ttcactatcc atttttcgtt
      901 gtttagccat aacggcaatg caccactaaa tgccccggac atggcgaatt gtttcggatt
      961 gacggcgcta accagttcgc tggatgagag attattcagc cgcaacagcg ccgggtcatg
     1021 ttgcggcata cgtaattgtt tcatcagtac gttaccgcct aacacatcga cgctaacatc
     1081 agtcaacagc aagggttctt cttcagtcca cggataacgc ccttgcaaat cagccgtaat
     1141 atttttcgct gtcaccagat taatcacttc ggcaattcgc aacgtaacgg ggccgcgagt
     1201 ccccagatgc caggctccat cggcaaaacg gaaaggcagg acaaaatcga caccgttaac
     1261 ctgattatct ggcatccagg cactaccgcc tttcaacacg ccgtgccctc ccgcgcggaa
     1321 tccttgttca ggcgcagcag aaaatgcaac ctgagcatac agttcaccat cgcgtaagtt
     1381 catcttccag tcgggtggca ccagcggctg gaatacagtc agtgattgtt ttggccacca
     1441 ggcgttaccg cgcagacgaa taccgtccca gcgaccattt acccgaaccg ggccaatctc
     1501 accagcatgt aaatcgcctt taaagaggaa atacgtcgga tcgcgcccat cgacgctaaa
     1561 ttttaaggtt gatggcggta acacactgcc gccagtgaac agcgtttgcc cggcgtccag
     1621 tgacagcgcg ccgctgaagg agggatgctg tgcgtcacgt acccagacga cgggcttgtc
     1681 cagaattaat cgcggctttt ctaccgtcat cgtaccgtat tgtaactggt cgaaaccggt
     1741 ggagaggtcg gtcagcgtaa tcgtgctgtc atgccattca ccttttcctg cgacatccca
     1801 ggtggcattc atcggtgtaa aactgccttt tccccagtag cgccactgcc agcggcccgc
     1861 gtcagggaga aaatcattcg ccagcccatc catatgcagc acgaaatcgc ccagttcatt
     1921 ttcatgcgcc tgcaaaatgg cctgcaaacg tccgtcaaca ccacgttggg tgacttttac
     1981 acccgctaaa ggccagcgga tttcatcgat gtccagcgaa tcgatgactc ttccctttga
     2041 acgaagtaac gcgcctggct caaaggccag cgttgggtca gtcagacttc cacttagctg
     2101 cgcgggtaag cgggcatata aaatgaggtc cgcctgtttc gcttcaccgg tcagctgcag
     2161 aggcagctgg ctgttatcca tgcttaattt tcctgggcca aaatttagca ccgcgttgcc
     2221 tttacccgct tgcccctggg tcagcacact cagtcgtccg ctgatcagag cgttctcaag
     2281 ccctgcctgc cagttgtcga ctttgacacc cagtcggcca ctcaaaggaa aacctgcata
     2341 cggccaactc cagcgaccat cgcttacggt caattgttga cgagtaattt gccacggcaa
     2401 atcgagcaac ggatcgccgt tatcacgtgc cagcacaatc aattgcccgc tattttcctg
     2461 ccagtccagc tctgcatcca ccagtgacgg ttcctgcggc aagtttaacg tcgcagtagc
     2521 atgcccactt acaggaagtc catccggcac gagcggcata gtaaattccc ccaccagttt
     2581 aaccggcggc tgatattcaa acgcgatgac atccagttcg ctgactgtaa gttgttgccc
     2641 tttcagctgg ccttgaaatt taactttttc gccctgataa cgcagttgct ggatatcaga
     2701 ggttaatgcg agagagagtt ttccctgcca ttcctgccag ggagaaaaaa tcagtttatc
     2761 gatattgatc caggtgttag gcagcatgga ctgccactgc gcgagggttt ttggagcagc
     2821 tggcgattgc tccgtctgcg gcaatttcgc cagacaagca gaatcaagtt ctaccgtgcc
     2881 gacgttcaat aaccagcggc tgggatgtga aaggctggcg ttggtgatat gtgcaagctg
     2941 acaatctccc accagataac ggagatcggg aatgattaaa cctttacgcg taatgcgtgg
     3001 gctttcatct aatgcaatac gtgtcccgag cggtagccag atgcccgcca gcgtgggaac
     3061 ccacagcccg agcgtcatca gcagcgtcaa cggcacaaga ataatcagta ataacagcgc
     3121 gagaacggct ttatatttac ccagcatggg tagttaatat cctgatttag cgaaaaatta
     3181 agcattcaat acgggtattg tggcatgttt aaccgttcag ttgaaggttg cgcctacact
     3241 aagcatagtt gttgatgaat ttttcaatat cgccatggtt ttcaattata tttgaaattt
     3301 tgtaaaatat ttttagtggc ttaaatgtga ttcaacatca ctggagaaag tcttatgaaa
     3361 ctcgccgttt atagcacaaa acagtacgac aagaagtacc tgcaacaggt gaacgagtcc
     3421 tttggctttg agctggaatt ttttgacttt ctgctgacgg aaaaaaccgc taaaactgcc
     3481 aatggctgcg aagcggtatg tattttcgta aacgatgacg gcagccgccc ggtgctggaa
     3541 gagctgaaaa agcacggcgt taaatatatc gccctgcgct gtgccggttt caataacgtc
     3601 gaccttgatg cggcaaaaga actggggctg aaagtagtcc gtgttccagc ctatgatcca
     3661 gaggccgttg ctgaacacgc catcggtatg atgatgacgc tgaaccgccg tattcaccgc
     3721 gcgtatcagc gtacccgtga cgctaacttc tctctggaag gtctgaccgg ctttactatg
     3781 tatggcaaaa cggcaggcgt tatcggtacc ggtaaaatcg gtgtggcgat gctgcgcatt
     3841 ctgaaaggtt ttggtatgcg tctgctggcg ttcgatccgt atccaagtgc agcggcgctg
     3901 gaactcggtg tggagtatgt cgatctgcca accctgttct ctgaatcaga cgttatctct
     3961 ctgcactgcc cgctgacacc ggcaaactac catctgttga acgaagccgc cttcgatcag
     4021 atgaaaaatg gcgtgatgat cgtcaatacc agtcgcggtg cattgattga ttctcaggca
     4081 gcaattgaag cgctgaaaaa tcagaaaatt ggttcgttgg gtatggacgt gtatgagaac
     4141 gaacgcgatc tgttctttga agataaatcc aacgacgtga tccaggatga cgtattccgt
     4201 cgcctgtctg cctgccacaa cgtgctgttt accgggcacc aggcattcct gacagcagaa
     4261 gctctgacca gtatttctca gactacgctg caaaacttaa gcaatctgga aaaaggcgaa
     4321 acctgcccga acgaactggt ttaatgttgc agctcccctg caatccaggg gagctgattc
     4381 agataatccc caatgacctt tcattctcta ttcttaaaat agtcctgagt cagaaactgt
     4441 aattgagaac cacaatgaag aaagtagccg cgtttgttgc gctaagcctg ctgatggcgg
     4501 gatgtgtaag taatgacaaa attgctgtta cgccagaaca gctacagcat catcgctttg
     4561 tgctggaaag cgtaaacggt aagcccgtga ccagcgataa aaatccgcca gaaatcagtt
     4621 ttggtgaaaa aatgatgatt tccggcagca tgtgtaaccg ctttagcggt gaaggcaaac
     4681 tgtctaatgg tgaactgaca gccaaagggc tggcaatgac ccgtatgatg tgcgctaacc
     4741 cgcagcttaa tgaactcgat aacaccatta gcgaaatgct gaaagaaggt gcacaagtgg
     4801 atctgaccgc gaaccagtta acgctggcga ccgcgaaaca gacattaact tataagctgg
     4861 cggatttaat gaattaatag ctgccacagc tcccggcggc aagtgactgt tcgctacagc
     4921 gtttgccgtt gggtaatgca cacatcccaa tcgccgtgcc atccagttga cgggcaacag
     4981 aaagcgaacc gccgatcatt gcacaatttg cttctccact actggacatc gacgctttta
     5041 aacctggcgc tacgtgcgcc gcagtcgcct gctgaacagg ttcactacta cacgccgaca
     5101 acaataaagc ggcacaccct acccaaaacg ctgctcgcat cttttcttcc tctgatcttc
     5161 aagccaaacg acaccgccat aaataatagg cagcacagag ggcgacatcg agagctgtcc
     5221 tgcgcgttgc cccgcatttt tactttttta tggctatttt tttgccctct gtttgatcaa
     5281 aacattcatt acgctgatgt gggggacaca aaagcgaaaa tgcagaagaa agccatttgc
     5341 taaaattgaa agattactac tgggcgcgca gcaatttcgt gcgcccctca tttgcgcaat
     5401 gtaagggtgt catatgatta ctattgacgg taatggcgcg gttgcttcgg tggcgtttcg
     5461 caccagtgaa gttatcgcca tctaccctat tacccccagt tccacgatgg cagaacaggc
     5521 tgatgcctgg gccggaaacg gcttgaagaa cgtttgggga gacacaccac gcgtggttga
     5581 aatgcagtcg gaagcgggtg ctatcgctac cgtgcatggc gctttgcaga cgggtgccct
     5641 ttcaacatcg tttacgtcat cgcagggttt gctgctgatg atcccgacac tgtacaaact
     5701 ggcaggcgaa ctcacaccgt ttgtcctgca tgtagcggca cgtaccgttg ccacacatgc
     5761 actctctatt tttggcgatc attccgacgt catggcggtg cgccagacgg gttgcgcgat
     5821 gttgtgtgcg gcaaacgtcc aggaagcgca agactttgct ctcatttcgc acatcgcgac
     5881 gctgaaaagc cgcgtgccat ttattcattt ctttgatggt ttccgcacgt cccacgaaat
     5941 caataaaatt gtcccgctgg ccgatgacac gattcttgat ctcatgccgc aggccgaaat
     6001 tgatgctcat cgcgcccggg cgctcaaccc ggaacatccg gtgatccgtg gtacgtccgc
     6061 caatcctgac tcttatttcc agtctcgcga agccaccaac ccctggtaca acgcagtcta
     6121 tgaccatgtt gaacaggcga tgaatgattt ctctgccgcg acaggtcgtc agtatcagcc
     6181 gtttgaatat tacgggcatc cgcaagctga acgggtgatt atcctgatgg gctcagccat
     6241 tggcacctgt gaagaagtgg ttgatgaatt gctaacccgt ggcgaaaaag tcggcgtgct
     6301 gaaagttcgc ctgtaccgcc ccttctcagc caaacacttg ctacaaactc taccgggatc
     6361 cgtacgcagc gtggcggtac tggacagaac caaagaaccc ggtgcccagg cagaaccgct
     6421 ctatctggat gtgatgaccg cactggcaga agcctttaat aatggcaagc gcgaaactct
     6481 gccccgtgtc attggtgggc gctatggtct ttcatccaaa gaatttggcc cggactgtgt
     6541 actggcggta tttgccgagc tcaacgcggc taaaccgaaa gcgcgcttta cggttggtat
     6601 ttacgatgat gtaaccaatc tgtccctgcc gttgccggaa aacacccagc caaactcggc
     6661 gaaacttgaa gccttgtttt atggccttgg tagtgatggc agcgtttccg cgaccaaaaa
     6721 caatatcaag attatcggta attccacgcc gtggtacgca cagggctatt ttgtttacga
     6781 ctccaaaaaa gcgggcggcc tgacggtttc tcaccttcgc gtgagcgaac agccgattcg
     6841 ttccgcttat ctcatttccc aggctgattt tgttggctgc caccagttgc agtttatcga
     6901 taaatatcag atggctgagc gtttaaaacc tggcggcatt ttcctgctca acacgccgta
     6961 cagcgcagat gaagtgtggt cgcgcttgcc gcaagaagtt caggccgtgt taaaccagaa
     7021 aaaagcgcgc ttctatgtga ttaacgcggc gaaaatcgcc cgcgaatgtg gcctggcggc
     7081 ccgtattaat accgtcatgc agatggcttt tttccatctg acgcaaattc tgcctggcga
     7141 tagcgccctc gcagaattgc agggtgcgat tgccaaaagt tacagtagca aaggccagga
     7201 tctggtggaa ggcaactggc aggctctggc gctggcgcgt gaatccgtag aagaagttcc
     7261 gttgcaaccg gtaaatccgc acagcgccaa tcgaccgcca gtggtttccg atgccgcccc
     7321 tgatttcgtg aaaaccgtaa ccgcagcgat gctcgcaggg cttggtgatg ccctccccgt
     7381 ttcggcgctg ccgccagacg gcacctggcc gatggggacc actcgctggg aaaaacgcaa
     7441 tatcgccgaa gagatcccca tctggaaaga ggaactctgt acccaatgta accactgcgt
     7501 cgccgcttgc ccacactcag ctattcgcgc aaaagtggta ccacccgaag cgatggaaaa
     7561 cgcccctgcc agcctgcatt cgctggatgt gaaatcgcgt gatatgcgcg ggcagaaata
     7621 tgtcttgcag gtggctccgg aagattgcac cggttgtaac ctgtgcgtcg aagtttgccc
     7681 ggcgaaagac cgtcagaatc cagagattaa agccatcaat atgatgtcgc gcctggaaca
     7741 tgtcgaagaa gagaaaatca attacgattt cttcctcaac ctgccagaaa tcgaccgtag
     7801 caaactggaa cgtattgata ttcgtacatc gcagctgatt acaccgctgt ttgaatattc
     7861 cggtgcttgc tccggttgtg gcgagacgcc gtatattaaa ttgctgactc agctctatgg
     7921 cgaccggatg ttgatcgcta acgccaccgg ctgttcttca atttatggcg gtaacctgcc
     7981 ctctacaccg tataccaccg atgccaacgg tcgtgggccg gcatgggcga actctctatt
     8041 tgaagataat gccgaatttg gccttggttt ccgcctgacg gtcgatcaac accgtgtccg
     8101 cgtgctgcgt ctgctggatc aatttgccga taaaatcccg gcggaattac tgacggcgtt
     8161 gaaatcagac gctacgccag aggttcgtcg agaacaggtc gcagctttac gccagcaact
     8221 caacgatgtt gccgaagcac atgaactgct acgtgatgca gatgcactgg tggaaaaatc
     8281 aatctggctg attggtggtg atggctgggc ttacgatatc ggctttggcg gtctggatca
     8341 tgtattgagt ttgacggaaa acgtcaacat tctggtgctg gatacgcaat gctattccaa
     8401 caccggtggt caggcgtcga aagcgacacc gctgggtgca gtaactaaat ttggcgagca
     8461 cggcaaacgt aaagcgcgta aagatcttgg cgtcagtatg atgatgtacg gtcatgttta
     8521 tgtggcgcag atttctctcg gcgcgcagct gaatcagacg gtgaaagcga ttcaggaagc
     8581 ggaagcgtat ccgggaccat cgctgatcat tgcttatagc ccgtgtgaag agcatggtta
     8641 cgatctggca ctcagccatg accagatgcg ccaactcaca gctaccggct tctggccgct
     8701 atatcgcttc gatcctcgtc gtgccgatga aggcaaactg ccgctggcgc tggattcacg
     8761 cccgccgtca gaagcactgg aagaaacgtt acttcacgag caacgtttcc gtcgtctgaa
     8821 ttcgcagcag ccagaagtgg cagaacagtt atggaaagat gctgcagctg atttgcaaaa
     8881 acgctatgac ttcctggcac aaatggccgg aaaagcggaa aaaagcaaca ccgattaaat
     8941 gctctggata aggattatcc aattctaaaa aaaagcccgg acgactgttc gggcttgtct
     9001 ttttatatgt tggaaaatca gtggcaatgc aatggcccaa cagaaaataa aatctgtgac
     9061 aataaaggca tataacccgc gcagaataac gtatagaaaa ttaaaagtat aatttttatt
     9121 ttgtatgtat tatcttcgat acattcacca gacttattat catttcagaa gaattatttg
     9181 attaaggttt tacttaaggc gtaacaaatg atatttatcg gctaactgaa cttctccttt
     9241 aggatgtttt cactccccgg aatggggata aaaggcaaat aaaataacta aaggatttat
     9301 tcaatgaaaa gcaaagtact ggcactttta attcctgccc tgctcgccgc aggtgctgca
     9361 catgcagccg aagtttataa taaagacggc aacaaattag atctgtatgg caaagttgat
     9421 ggcctgcatt atttttctga taattcagcg aaagatggcg atcagagcta tgcgcgtctg
     9481 ggttttaaag gcgaaaccca aattaacgat caactcactg gctacggtca atgggaatac
     9541 aatattcaag caaacaacac tgaatcttca aaaaaccagt catggacccg tctggcattt
     9601 gccgggctga aatttgcaga ttacggttct ttcgattacg gacgtaatta tggcgtaatg
     9661 tacgacatcg aaggctggac cgatatgctg cctgaatttg gcggtgactc ttataccaat
     9721 gcagacaact ttatgactgg tcgagccaat ggcgtcgcga cttatcgtaa tactgatttc
     9781 ttcggtctgg taaatggtct gaacttcgcg gtgcagtatc aaggtaacaa cgaaggagcc
     9841 agtaatggtc aggaaggcac caacaacgga cgtgatgttc gccatgaaaa cggtgacggc
     9901 tggggttttt ccacaacata tgatttaggc atgggcttta gcgctggtgc ggcatacacc
     9961 tcttctgacc gcaccaatga ccaggttaac catactgcgg cgggtggtga taaagcagac
    10021 gcgtggactg ctgggctaaa atacgatgct aacaatattt acctggcaac catgtattca
    10081 gaaacgcgta atatgacccc gtttggcgac agcgattatg ctgtggcaaa caaaacccag
    10141 aattttgaag tcactgccca gtaccagttt gattttggtc tgcgtccggc agtctctttc
    10201 ctgatgtcta aaggccgtga cctgcacgct gccggtggtg cagacaaccc ggcaggtgtt
    10261 gatgataaag atctggttaa atacgccgat gttggcgcga cttactattt caataaaaac
    10321 atgtccacct acgttgacta taaaatcaac ctgttggatg aagatgacag cttctacgct
    10381 gccaatggca tctctaccga tgatattgtc gctttaggtc tggtttatca gttctaaatc
    10441 ctcctgcccg ctgttatggc gggctttttc tgcttattct tcctcctttg atctaaatta
    10501 aaaatgtgaa ctccatcatt acacaaaaag tgtcatctgg cgttacactt tatgcggata
    10561 ctaaaacagg aggttttatg aacagaacga ttcttgtccc tatcgatatt tccgattcag
    10621 aattaactca acgcgtgatt agccacgttg aggcagaggc aaagattgac gatgcagagg
    10681 ttcatttcct gacggtaata ccttcactgc cctactatgc ctctctgggt ttagcgtatt
    10741 ccgcagaatt accggcaatg gatgacctga aagcggaagc caaatcgcaa ctggaagaga
    10801 tcattaaaaa atttaaactg ccaaccgaca gagtgcatgt ccatgttgag gaaggctcgc
    10861 ccaaagaccg cattctggaa ttggcgaaga agatccccgc tcatatgatc atcattgctt
    10921 cccatcgacc ggatatcacc acttatctgc tcggttccaa cgccgcagct gtagtgcgtc
    10981 acgcagagtg ctccgtgctg gttgtgcgct gacactaacg cccgcacatt gctgcgggct
    11041 ttttgattca tttcgcaaat gtgctgacat tttcccctct aatccgtacc atacacgcca
    11101 ctgtttttat atcagatttc ttatgctggg cattccggca tgacgcatac tcttctgatg
    11161 ccatataacg aattgagtcg cttttaaatg tcgcaaaatc aagaaattag taagaaagaa
    11221 caatacaacc tgaacaagta agggcaaaaa tcacaactat ctgactcata agtattttat
    11281 ttatttttca atatgttaaa cattatcagc gacaacaata agctacgata acccactctt
    11341 tttttgcccc atttttgcca tcaacaattt tcctcataaa gtcatttcaa agcctaatag
    11401 ctgctctact tttttcctca atatcatgtc gccagcagga aacaacctaa tccctgtttt
    11461 aggcctcaaa gctgttaatg ataattattt tcattttgta taggttatgc tataaaacat
    11521 agccgttgct atgtttgttc taattttgct cactataggt actaaattat gcactcaata
    11581 aaaaaagtaa ccatgctctt ggggtgcctc gccctcacct gctcgatcgc atttcaggca
    11641 agtgcaactg aaaaattcaa ggtcattaca acatttacca tcatcgcgga tatggccaaa
    11701 aacgtggctg gagatgctgc agaagtctca tccataacca agcctggtgc agaaattcat
    11761 gagtatcagc ctacccctgg cgatattaaa cgtgcacagg gggcacaact gattctcgcc
    11821 aatggtatga atctggaatt gtggttccaa cgcttttacc agcatctcaa tggggttcca
    11881 gaagtaattg tctcttcggg tgtgacgcca gtagggatca ccgaaggacc ctatgagggc
    11941 aaacctaatc cccatgcatg gatgtcgcca gataatgctc tgatttacgt cgataatatt
    12001 cgtgatgcgt tgataaaata cgatccggca aatgcacaaa cctaccaacg taatgccgat
    12061 acttataaag ccaagattac ccaaaccctt gcccccctgc gtaagcagat tacggaactc
    12121 cctgagaatc agcgatggat ggtcaccagt gaaggggctt tttcttatct cgcacgcgat
    12181 ttggggctaa aagagcttta tctgtggccg attaatgccg atcaacaagg aacaccgcag
    12241 caggtacgta aggttgttga tatagttaag aaaaatcata tcccggcagt ctttagcgag
    12301 agtacgattt ccgataaacc agcgcgtcag gttgcgcgtg aaaccggcgc acactacggc
    12361 ggtgtgctct atgtcgattc cctgagcaca gaaaacggcc cggtacctac gtatatcgac
    12421 cttcttaagg ttactaccag tacgctggta cagggaatta aagccgggaa aagggagaaa
    12481 taatgatgca atctgcaggc attgtcgtta atgatgttac tgtcacctgg cgtaacgggc
    12541 acacagcact gcgcgatgca tccttcacag taccaagtgg atctattgcc gctctggttg
    12601 gggtaaacgg ttccggaaaa tcgacgttgt ttaaagcgat tatgggattt gtgcgtctga
    12661 ccagcggaaa gatatctgtt ctgggtattc ccacgcgaca ggcgctacag aaaaacctgg
    12721 ttgcctacgt ccctcagtca gaagaggttg actggtcatt tcctgtactg gtggaagatg
    12781 tggtgatgat gggccgctat gggtatatgg gtatgttgcg tatagccaaa aagagggatc
    12841 gtcagattgt caccgatgcg ctggaacgtg tcgatatggt ggattttcgc catcgtcaaa
    12901 tcggcgagct ttccggtgga caaaagaaac gcgtctttct ggcgagagcg attgcacagc
    12961 agggtgatgt gatcctgctg gatgaacctt ttaccggcgt tgatgtgaaa accgaagcga
    13021 aaatcatcag cctgttgagg gagttacgcg cggaaggcaa aacgatgctt gtctcaacgc
    13081 acaatctcgg ctcagtcacg acattttgcg attatacggt catggtcaaa ggcaccgtcc
    13141 tggcaagcgg gccgacagac accactttta cagccgagaa cctggagctg gcttttagcg
    13201 gcgtactgcg ccatgtcaca cttaacggct cggaagaaag cattattact gacgatgaac
    13261 gcccttttgt ggcacatcga ccgtcagcgg tgcagaggga agcaagatga acgtgctact
    13321 ggaacccttc agctatgaat atatgctcaa tgcgatgtgg gtctcggcaa tggtcggcgg
    13381 tctctgcgct ttcctgtcat gctatctgat gctaaaaggc tggtcgctga ttggcgatgc
    13441 gctgtcgcac tctattgtcc cgggtgttgc gggggcatat atgctggggc ttccgttttc
    13501 tctgggagcc ttcttttccg gcggactggc agcgggcagc atgctgtttc ttaaccaacg
    13561 cacccgctta aaagaagatg ccatcatcgg cctgatcttc tcgtcctttt ttggcctggg
    13621 gctgtttatg gtgtcattga acccgacatc cgtgaacatt cagaccatcg tcctgggcaa
    13681 tattctggca atcgatccgg cggatatcct gcaactcact atcattggca ttctctcgat
    13741 catcgtgctt tttttcaaat ggaaagatct tatggtgacc tttttcgacg agaatcacgc
    13801 ccgtgctatt ggattacatc cgggcagatt aaaaatcctc ttcttcaccc tgctgtcggt
    13861 ttcgaccgtt gcggcgctgc aaacggttgg tgcctttctg gtgatctgtc tggtggtgac
    13921 tcccggtgca acagcatggt tgttaaccga tcgttttccc cgcctgctca taattgctgt
    13981 aactattggc agtgtaacca gtttcctcgg cgcgtgggtc agttactttc tggacggcgc
    14041 gacaggtgga atcatcgtgg tggcgcagac actgctgttt cttttagcat ttgtatttgc
    14101 gcccacccat ggacttttgg caaatcgtcg gcgtgcgcat aaagcgctgg aggatcgctc
    14161 atgatggcat tattactgga gccactgcag ttcaccttta tgagtcacgc actgctgatt
    14221 tcactggtag tttccatacc ctgtgcgctg ctgtcggtct ttctggtcct gaaaggttgg
    14281 gcactgatgg gtgacgcgat gagtcatgcg gtttttcctg gcatcgtgct tacctggatt
    14341 ctggggttac ctctggctac aggggcattc gtcgccggag tattctgcgc ggtggcgacg
    14401 ggatacctga aagacaacag ccgaatcaag caagatacag ttatggggat tgttttttct
    14461 ggcatgtttg ccgcaggtct gatcttgtat attgcaatca aaccagacgt acatcttgac
    14521 catattcttt tcggcgacat gctcgggata accatcggcg atataatcca gacggtgatt
    14581 attgccgggc tggttacact tgttattagc gtaaaatggc gggatttttt gctgttcagc
    14641 tttgattatc aacaggcgca ggtaagcggt ttgcatacga gatggctgca ttatgggctg
    14701 ctgtgcatgg tttccctgac cattgtggcg acgctgaaag cagtaggtat cattctctct
    14761 atttctctgc tcattgcgcc tggcgccatt gcagtactcc tgacacaacg ctttcatatt
    14821 gcgctcctac tggcgactgg catatcggta atagtgtcaa tgactggtgt ctggctgtcc
    14881 ttttttatcg acagcgcacc agctccgacg attgtcgtct tattcgcggt cgtgttcatc
    14941 atgacgttta ccgttaccag catcaacgca cgcacaaagg gaaacgccca tacacaggat
    15001 ctgttatcac ccaattagca caatatccga ggacagcatc gtccgccagc gtccgccagc
    15061 ctacagaagt tcggaaagcc atggaaggtc gttgggagga ggtacgaatt ctatcatgca
    15121 aaaaatacgt aaaatcgata acgcctagaa atcattcaat actcgcacta tcgaaagttt
    15181 accagccaac cgcggcacgt tcctgcatac gacgtgccgc agcttctgtt attccacgat
    15241 aaaattccta accgaattca aatccttcag actattcagc tcttccttca gctcccgctg
    15301 acggcgataa atcgtaagcg ccccgagaag tacgtagcgt aaggattatt ttacagacga
    15361 gaagttccag ggcagcagtt catgcacttg gttcgacggc cagtcattga gcttctcgat
    15421 cacttcgcgc aaccagtcct ccggctccac ttcgttctgt ttgcaggtga ccagcagact
    15481 gtagatgatc gccgcacttt ctcctccctt gtctgagccg aaaaagagat aattttttct
    15541 tccaaccgcc accgatcgta acgcgttttc accgatgttg ttgtctattt ccacccagcc
    15601 gtcacgacag aactcgttca gcgcattcca gtgattcagg atatagtcga acgccttcgc
    15661 catctccgca tgtttcgaca gcgttttcct ctgcaactgt atccagtcgt acaatgactg
    15721 catcaactgg acgcttctgg cttttctgac tgcaagccgt tcctctgccg gactgccacg
    15781 tatctccgct tctatgtcgt ataactctgc tatccgtctg agcgcttcct gagtcatttc
    15841 tgtcggacgg cgcacatcct cgtcatggat ttttcggcgg gcgtgggcca ggcacccggc
    15901 ttccttcacc cggcccgttt cgtacagtac gttataacct gcataggcat cagcctgcag
    15961 tacgccctga tactttgcca ggtggagctg cggatgttct cctttgcgat ctgccgaata
    16021 cgcgaaccag acggctgccg gcagggatga acccgcatta cgatcatccc tgacgtatac
    16081 ccacagacga cccgttttcg tctttccgtt ccccggggcg gttcattcag cacagattta
    16141 taaacctgct gaaactcggt ttcgtccata ttcgcaaacg agatggattt cgccctgcgc
    16201 ccacggctac cgtccggata aatatgctcg gtgtaaaatc cggcctgaat ggttacccac
    16261 tcgcggaaag cctcaaacga ctttagcaat gctgtatctc gggttctgcg tgtcgcaact
    16321 gtattcagat attgctctgc ggcttcgctc agagctggcg tatgttcccg gcctactgat
    16381 tcgcacaggt actcaacgaa gcctgatacc agttctcgtt cgcgaggcgt aatcgcccca
    16441 ccgatcggag tccagtaatc gaatcccagt tgcaggagtt tgaaaaaacg cttgtggaat
    16501 gcgtagttac gcacacgctt aaagtctgcg tgtatccact cacctgtttt gatttgatgc
    16561 agaaaatcgc aactctccgg cgtcgccggg agaagtaatc cggaagaggt ttgtttgatc
    16621 agttgtatat gcgccatcgg ctttctccgg tggcacggtg ttacacagca ggagttcaat
    16681 cctgctcaag attgtagatg agtttattct tcagcaaaag cagaaaacca gccttaaaac
    16741 caatctcttt caaaacccgt aatgatgtga caaattcgtc ctcacgcaaa ataaaaccgt
    16801 ccgtcagaag tccattacaa aaataaaata acacagcacc gctcttcctt tgttgagatt
    16861 gcaaacatct aatgcggcaa tggctgacaa tcgctccatt ctcaacgcgc acagcataga
    16921 ggccattttc actaaaaatt tcacgcaatt cttcgatttt catcttcaga atccttccag
    16981 ataaatagct ctcccctgtt cggggtccat ccctcttctc cctgcgcgct acttaagtga
    17041 gtcgattcta tctgcgaagg tgcgcgaatc aaattcaccg gaaataaaca acaaaaaacc
    17101 cgccgaaacg ctgagagatc acagcgatgg gcgggttaag tgcgggtgcg ttgaggatgc
    17161 ctgacacatc agaggtgggc ggggatggga tcagctcccc gcccggtcac tcttacttcc
    17221 tggattcgta gtctacgaag acagcgacct ccgtctggcc ggttcggatt cgtacctcac
    17281 agaggtcttt cctcgttacc agtgccgtca ctatgacggt taaacagatg acgatcaggg
    17341 cgattaacat cgccttttgc tgcttcatag cctgcttctc cttgcctttc ggcatgtaag
    17401 aggctaacct acatgtgcaa agcatgaaat tggcctcaga ttaatgttaa gcgtcttgcc
    17461 ggacgcgtaa tgttaactgg ggcttttctc tatctgcctt ttggtgttca tgcctgaagc
    17521 agatagcctc aagcacccgc agtcattcta cttacctcgc caatatgaaa tcaatcagaa
    17581 aggtgcccca taaaatcact ccttctcttc tttaccgtag tggagttgac caattttgat
    17641 aagagggcgt ccctgagatt tgcggtgtag attggtatcg cgcagagaat acacacagcc
    17701 acaatattcc tgctgataga atttttcgcg cttgctgatt tcaatcatac gggacgagcc
    17761 tccctgcttg cgccagttat aatcccagta caccatgccc ggataatgcg cgacggctcg
    17821 ccgcccacag tcgttaacct gctgcatatt tttccagcgt gaaatgccca gtgaactgct
    17881 gatcacactg aaaccatttt cagcggcgta cagcgctgtc cgctcaaaac gcatgtcaaa
    17941 acacatggtg caacggatcc ctcgttcggg ctcccattcc attcctttgg ctcgttcaaa
    18001 ccagttgtct gtgtcgtaat cagcatcaat aaacggcacg ccgtgttgtt cagcaaagcg
    18061 aatattctca tccttacgaa ttaaatactc tttctgagga tgaatgttcg ggttgtagaa
    18121 aaagatggtg tagtcgattc ccgaggcctg aagcgcctcc atcacctcac cggaacatgg
    18181 agcacagcaa gagtgcagta gtagtttgtt tgccccgttt gggagctcca atttgggccg
    18241 tttgaaatca gcaactgtca taaatatgtt tattggggtc ataaaaatat caaagagtgt
    18301 agcattagaa cggggctatc ggaaacagat gtgtgactgc tccccgccct ttcg
//
LOCUS       DADMJB010000077        17926 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.077, whole genome shotgun sequence.
ACCESSION   DADMJB010000077 DADMJB010000000
VERSION     DADMJB010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17926)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17926)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17926
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.077"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..118)
                     /locus_tag="JN078_002307"
     CDS             complement(<1..118)
                     /locus_tag="JN078_002307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HAY9041493.1"
                     /translation="MKRKVLAMLVPALLVAGAANAAEIYNKDGNKVDFYGKMV"
     gene            679..1044
                     /locus_tag="JN078_002308"
     CDS             679..1044
                     /locus_tag="JN078_002308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416472.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HAY9041494.1"
                     /translation="MEKCDFYHIIVLSLNFPGYLKMEYGSTKMEERLSRSPGGKLALW
                     AFYTWCGYFVWAMARYIWVMSRIPDAPVSGFESDLGSTAGKWLGALVGFLFMALVGAL
                     LGSIAWYTRPRPARSRRYE"
     gene            1084..1779
                     /locus_tag="JN078_002309"
     CDS             1084..1779
                     /locus_tag="JN078_002309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohydrolase"
                     /protein_id="HAY9041495.1"
                     /translation="MDLQHWQAQFENWLKNHHQHQDAAHDVCHFRRVWATAQKLAADD
                     DVDMLVILTACYFHDIVSLAKNHPQRQRSSILAAEETRRLLREEFEQFPAEKIEAVCH
                     VIAAHSFSAQIAPLTTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDGEDPFAQ
                     HRPLDDKRYALDHFQTKLLKLPQTMQTARGKQLAQHNAHFLVEFMAKLSAELAGENEG
                     VDHKVIDAFSPAG"
     gene            1846..3264
                     /locus_tag="JN078_002310"
     CDS             1846..3264
                     /locus_tag="JN078_002310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HAY9041496.1"
                     /translation="MQENISVTDSYSTGNAAQAMLEKLLQIYDVKTLVAQLNGVGENH
                     WSAAILKRALANDSAWHRLSEKEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRG
                     FESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHKEGVSDEAAAEH
                     IRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRP
                     AMFVLENVKNLKSHDQGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHR
                     ERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPVLWKYLYR
                     YAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRGWDMAKGEKDFDDP
                     LNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLL
                     EPKIKQAVALRQQEAQHGRRSR"
     gene            3245..3715
                     /locus_tag="JN078_002311"
     CDS             3245..3715
                     /locus_tag="JN078_002311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="very short patch repair endonuclease"
                     /protein_id="HAY9041497.1"
                     /translation="MADVHDKATRSKNMRAIATRDTAIEKRLASLLTGQGLAFRVQDA
                     SLPGSPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDIS
                     RLQELGWRVLIVWECALRGREKLTDEALTERLEEWICGEGASAQIDTQGIHLLA"
     gene            complement(3704..4624)
                     /gene="yedA"
                     /locus_tag="JN078_002312"
     CDS             complement(3704..4624)
                     /gene="yedA"
                     /locus_tag="JN078_002312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="drug/metabolite exporter YedA"
                     /protein_id="HAY9041498.1"
                     /translation="MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRF
                     LAAGILLMAFLLLRGHKLPPLRPLLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVV
                     VATVPLFTLCFSRLFGIKTRKLEWVGIAIGLAGIIMLNSGGNLSGNPWGAILILIGSI
                     SWAFGSVYGSRITLPVGMMAGAIEMLAAGVVLMIASMIAGEKLTALPSLSGFLAVGYL
                     ALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLGTGLGGETLSKIEWLALGVI
                     VFAVVLVTLGKYLFPAKPVVAPVIQDASSE"
     gene            4797..5714
                     /locus_tag="JN078_002313"
     CDS             4797..5714
                     /locus_tag="JN078_002313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 domain-containing protein"
                     /protein_id="HAY9041499.1"
                     /translation="MLLAGSSLLTLLDDIATLLDDISVMGKLAAKKTAGVLGDDLSLN
                     AQQVSGVRANRELPVVWGVAKGSLINKVILVPLALIISAFIPWAITPLLMIGGAFLCF
                     EGVEKVLHMLEARKHKEDPAQSQQRLEKLAAQDSLKFEKDKIKGAIRTDFILSAEIVA
                     ITLGIVAEAPLLNQVLVLSGIALVVTVGVYGLVGVIVKIDDLGYWLAEKSSALMQALG
                     KGLLIIAPWLMKALSIVGTLAMFLVGGGIVVHGIAPLHHAIEHFAGQQSAVVAMILPT
                     VLNLILGFIIGGIVVLGVKAVAKIRGQAH"
     gene            5793..5975
                     /locus_tag="JN078_002314"
     CDS             5793..5975
                     /locus_tag="JN078_002314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2158 domain-containing protein"
                     /protein_id="HAY9041500.1"
                     /translation="MSFMVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGYGVKREAFH
                     ETELVPGEGSRSAEEV"
     gene            6146..7840
                     /gene="yedQ"
                     /locus_tag="JN078_002315"
                     /pseudo
     CDS             6146..7840
                     /gene="yedQ"
                     /locus_tag="JN078_002315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310721.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis regulator YedQ"
     gene            complement(7837..8652)
                     /locus_tag="JN078_002316"
     CDS             complement(7837..8652)
                     /locus_tag="JN078_002316"
                     /EC_number="3.1.3.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-3-phosphoglycerate phosphatase-related
                     protein"
                     /protein_id="HAY9041501.1"
                     /translation="MFSIQQPLLVFSDLDGTLLDSHSYDWQPAAPWLSRLREANVPVI
                     LCSSKTSAEMLYLQKTLGLQGVPLIAENGAVIQLAEQWQDIDGFPRIISGISHGEISQ
                     VLNTLREKEHFKFTTFDDVDDATIAEWTGLSRSQAALTQLHEASVTLIWRDSDERMAQ
                     FTARLNELGLQFMQGARFWHVLDASAGKDQAANWIIATYQQLSGKRPTTLGLGDGPND
                     APLLEVMDYAVIVKGLNREGVHLHDEDPARVWRTQREGPEGWREGLDHFFSAR"
     gene            complement(8950..9166)
                     /gene="yodD"
                     /locus_tag="JN078_002317"
                     /pseudo
     CDS             complement(8950..9166)
                     /gene="yodD"
                     /locus_tag="JN078_002317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416463.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide/acid resistance protein YodD"
     gene            9275..9517
                     /gene="dsrB"
                     /locus_tag="JN078_002318"
     CDS             9275..9517
                     /gene="dsrB"
                     /locus_tag="JN078_002318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein DsrB"
                     /protein_id="HAY9041502.1"
                     /translation="MPEKRNCSTLAQSHRRKTMKVNDRVTVKTDGGPRRPGVVLAVEE
                     FSEGTMYLVSLEDYPLGIWFFNEAGHQDGIFVEKAE"
     gene            complement(9561..10184)
                     /gene="rcsA"
                     /locus_tag="JN078_002319"
     CDS             complement(9561..10184)
                     /gene="rcsA"
                     /locus_tag="JN078_002319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator RcsA"
                     /protein_id="HAY9041503.1"
                     /translation="MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD
                     SQRPSVVFINEDCFIHDASNSQHIKHIINQHPNTLFIVFMAIANVHFDEYLLVRKNLL
                     ISSKSIKPESLDDILGDILKKETTITSFLNMPTLSLSRTESSMLRMWMAGQGTIQISD
                     QMNIKAKTVSSHKGNIKHKIKTHNKQVIYHVVRLTDNVTNGIFVNMR"
     gene            complement(10469..11254)
                     /gene="fliR"
                     /locus_tag="JN078_002320"
     CDS             complement(10469..11254)
                     /gene="fliR"
                     /locus_tag="JN078_002320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HAY9041504.1"
                     /translation="MMQVTSDQWLSWLSLYFWPLLRVLALISTAPILSERSVPKRVKL
                     GLAMMITFVIAPSLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEII
                     GLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG
                     GEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGF
                     PLTLTVGISLMAALMPLIAPFCEHLFSEMFNLLADIISELPLI"
     gene            complement(11263..11532)
                     /gene="fliQ"
                     /locus_tag="JN078_002321"
     CDS             complement(11263..11532)
                     /gene="fliQ"
                     /locus_tag="JN078_002321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013365797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HAY9041505.1"
                     /translation="MTPESVMMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQI
                     NEMTLSFIPKIIAVFIAIIIAGPWMLNLLLDYVRTLFTNLPYIIG"
     gene            complement(11542..12278)
                     /gene="fliP"
                     /locus_tag="JN078_002322"
                     /pseudo
     CDS             complement(11542..12278)
                     /gene="fliP"
                     /locus_tag="JN078_002322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310714.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly.; frameshifted; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
     gene            complement(12278..12643)
                     /gene="fliO"
                     /locus_tag="JN078_002323"
     CDS             complement(12278..12643)
                     /gene="fliO"
                     /locus_tag="JN078_002323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310713.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliO"
                     /protein_id="HAY9041506.1"
                     /translation="MNNHATVQSSTPVSAAPLLQVSGALIAIIALILAAAWQVKRLGF
                     APKRTGVNGLKISASASLGARERVVVVDVEDARLVLGVTAGQINLLHKLPPSAPTEEI
                     PQTDFQSVMKNLLKRSGRS"
     gene            complement(12646..13059)
                     /gene="fliN"
                     /locus_tag="JN078_002324"
     CDS             complement(12646..13059)
                     /gene="fliN"
                     /locus_tag="JN078_002324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HAY9041507.1"
                     /translation="MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGG
                     GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN
                     GYLIAQGEVVVVADKYGVRITDIITPSERMHRLSR"
     gene            complement(13056..14060)
                     /gene="fliM"
                     /locus_tag="JN078_002325"
     CDS             complement(13056..14060)
                     /gene="fliM"
                     /locus_tag="JN078_002325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HAY9041508.1"
                     /translation="MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQR
                     RVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL
                     NLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKL
                     ALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNIC
                     LPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQIL
                     KLKPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK
                     "
     gene            complement(14065..14529)
                     /gene="fliL"
                     /locus_tag="JN078_002326"
     CDS             complement(14065..14529)
                     /gene="fliL"
                     /locus_tag="JN078_002326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HAY9041509.1"
                     /translation="MTDYAISKKSKRSLWIPILVFITLAACASAGYSYWHSHQVAADD
                     KAQQRVVPSPVFYALNTFTVNLGDADRVLYIGITLRLKDEATRSRLSEYLPEVRSRLL
                     LLFSRQDAAVLATEEGKKNLIAEIKTTLSTPLVAGQPKQDVTDVLYTAFILR"
     gene            complement(14634..15761)
                     /gene="fliK"
                     /locus_tag="JN078_002327"
     CDS             complement(14634..15761)
                     /gene="fliK"
                     /locus_tag="JN078_002327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook length control protein FliK"
                     /protein_id="HAY9041510.1"
                     /translation="MIRLAPLITADVDTTTLPGGKASDAAQDFLALLSEALAGETTTD
                     KAAPQLLVATDKPTTKGEPLISDILADAQQADLLIPVDETLPVINDEQSTSTPLTTAQ
                     TMTLAAVADQNTTKDEKADDLNEDVTASLSALFAMLPGFDNTPKVTDVPSTVLPAEKP
                     TLFTKLTSAQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPH
                     QTQPLPTVAAPVLSAPLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLK
                     VDDNQAQIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGESFSGQQQAASQ
                     QQQSQRTVNHEPLAGEDDDTLPVPVSLQGRVTGNSGVDIFA"
     gene            complement(15758..16201)
                     /gene="fliJ"
                     /locus_tag="JN078_002328"
     CDS             complement(15758..16201)
                     /gene="fliJ"
                     /locus_tag="JN078_002328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis chaperone FliJ"
                     /protein_id="HAY9041511.1"
                     /translation="MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLID
                     YQNEYRNNLNSDMSAGMTSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWR
                     EKKQRLQAWQTLQERLSTAALLAENRLDQKKMDEFAQRAAMRKPE"
     gene            complement(16220..17588)
                     /gene="fliI"
                     /locus_tag="JN078_002329"
                     /pseudo
     CDS             complement(16220..17588)
                     /gene="fliI"
                     /locus_tag="JN078_002329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416451.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellum-specific ATP synthase FliI"
     gene            complement(17588..>17926)
                     /gene="fliH"
                     /locus_tag="JN078_002330"
     CDS             complement(17588..>17926)
                     /gene="fliH"
                     /locus_tag="JN078_002330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707825.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HAY9041512.1"
                     /translation="ASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGK
                     PQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQE
                     LCRLAAPGVV"
BASE COUNT         4397 a         4484 c         4717 g         4328 t
ORIGIN      
        1 caaccatctt gccgtagaaa tcaactttat tgccatcttt attgtaaatt tcagccgcat
       61 ttgctgcgcc agcaactaat aacgccggga ccagcattgc cagaactttt cttttcatta
      121 tgtattccct tgtgattata atcttcatga atatatcaat aagtgccgtt atccaaaaaa
      181 aagcacattt ggatactatt ctatgaagtt catttcattt taagtattac atgcaacaaa
      241 tgtatttaaa aggtttcaaa atgtttctaa tctatttaat ataattcaga gatatgaatt
      301 ataaatattc atgaaaatta taaatgtata tcaatatgtt atgagttgag cggaaacata
      361 gggggtatca atgattgttg cgccaaacgg ctggtgtgat caggcgcaca ttaatgaagg
      421 cataaaaaaa agccggcatc atgccggccc aaaaaatata aacaagacga taaaaggcta
      481 ataacggaag catcatgaca cagaataata aaaaggtata attgtaatca gtgctaatat
      541 attgattaaa tgaattaata aagccgatat caaagataaa taaaatcgct caaaacgatt
      601 tttcctgtat tcactgccgt tgcgcaaaat ttatctattt gttcaaaaaa tgattgagtc
      661 ttgactggct catccaatgt ggaaaaatgt gacttttatc acataatagt actaagtctg
      721 aattttccgg gttatctcaa aatggaatac ggttcgacaa agatggaaga gagactctct
      781 cgcagccctg gcggcaaact ggctttgtgg gctttctata catggtgtgg ctatttcgtc
      841 tgggcaatgg cgcgttacat ctgggtgatg agccggatcc ccgatgcccc cgtgtcggga
      901 tttgaaagcg atttaggctc taccgcggga aagtggttag gggcactggt cggattttta
      961 tttatggctc tggtcggggc attgttaggc agcattgcct ggtacacccg acctcgtccc
     1021 gcacgtagca gacgctatga ataaaaactg ctaaggtggc gactctttgg caacggagcg
     1081 cgtatggact tacaacactg gcaggcacag ttcgaaaact ggttgaaaaa ccatcatcag
     1141 caccaggacg cggcccatga cgtgtgtcat tttcgccgcg tctgggctac ggcacagaag
     1201 ctggcggcag atgacgatgt cgatatgctg gtgattttaa ccgcctgtta ttttcacgat
     1261 attgtgagcc tggcgaaaaa tcatccgcaa aggcagcgtt cttcaatcct ggcggcagaa
     1321 gagacgcgtc gcctgctccg tgaagagttc gagcaatttc cggcggagaa aatcgaggcc
     1381 gtttgtcatg tcattgccgc tcacagtttc agcgcgcaaa tcgccccctt aacaacggaa
     1441 gctaaaatcg tccaggatgc ggatcggctg gaagccctgg gggcgattgg cctggcgcgc
     1501 gtgtttgccg tttcaggggc attgggcgtg gcgctgtttg atggtgaaga tccgttcgca
     1561 cagcatcgcc cgcttgatga taaacgctac gcgctggatc atttccagac taagttgctg
     1621 aagctaccgc aaaccatgca aaccgcaaga ggcaagcagc tggcgcagca caacgcgcat
     1681 tttttagtcg agtttatggc gaagctcagt gccgaactgg cgggggagaa tgaaggtgtc
     1741 gatcacaagg tgatagatgc gttttcaccc gcgggataag cgcgtggccc taaatggctg
     1801 taattatgtt aacctgtcgg ccatctcaga tggccggtta aatctatgca ggaaaatata
     1861 tcagtaaccg attcatacag caccgggaat gccgcacagg caatgctgga gaaactgctg
     1921 caaatttatg atgttaaaac gctggtggcg cagcttaatg gtgtgggtga gaatcactgg
     1981 agcgcggcaa ttttaaaacg tgcgctggcg aatgactcgg catggcaccg tttaagtgag
     2041 aaagagttcg cccatctgca aacgttgtta cccaaaccac cggcacatca tccgcattat
     2101 gcgtttcgct ttatcgatct atttgccgga attggcggca tccgtcgcgg ttttgaatcg
     2161 attggcggac aatgcgtgtt taccagcgaa tggaacaaac atgcggtacg cacttataaa
     2221 gccaaccatt attgcgatcc ggcgacgcat cattttaatg aagatatccg cgatatcacc
     2281 ctcagccata aagaaggcgt gagtgatgag gcggcggcgg aacatattcg tcaacacatt
     2341 cctgaacacg atgttttact ggccggtttc ccttgtcagc cattttcgct ggctggcgta
     2401 tcgaaaaaga actcgctcgg gcgggcgcac ggttttgcct gcgataccca gggcacgctg
     2461 ttttttgatg tggtacgcat tatcgacgcg cgtcgtccgg cgatgtttgt gctcgaaaac
     2521 gtcaaaaacc tgaaaagtca cgaccagggt aaaacgttcc gcatcatcat gcagacgctg
     2581 gacgaactgg gctatgacgt ggctgatgca gaagataacg ggccggacga tccgaaaatc
     2641 atcgatggta aacattttct gccgcagcac cgtgaacgca tcgtgctggt gggttttcgt
     2701 cgcgatctta atctgaaagc cgattttact ctgcgtgata tcagcgaatg tttccctgca
     2761 cagcgagtga cgctggcgca gctgttggac ccgatggtcg aggcgaaata tatcctgacg
     2821 ccggtgctgt ggaagtacct ctatcgatat gcgaaaaaac atcaggcgcg cggtaacggc
     2881 ttcggttatg gaatggttta tccgaacaat ccgcaaagcg tcacgcgtac gctgtctgcg
     2941 cgttattaca aagatggcgc ggaaatttta atcgatcgcg gctgggatat ggccaaaggt
     3001 gagaaagact ttgacgatcc gctgaatcag caacatcgtc cacgtcggtt aacgcctcgg
     3061 gaatgcgcgc gcttaatggg ttttgaagcg ccgggagaag cgaaattccg cattccggtt
     3121 tcggacactc aggcctatcg ccagttcggt aactcggtgg tcgtgccggt ctttgccgcg
     3181 gtggcaaaac tgcttgagcc aaaaatcaaa caggcggtgg cgttgcgtca gcaagaggca
     3241 caacatggcc gacgttcacg ataaggccac tcgcagcaaa aatatgcgcg cgattgccac
     3301 gcgtgatacg gcgattgaga agcgcctcgc cagtctgtta accgggcagg gcctggcgtt
     3361 tcgcgttcag gacgccagtc tgcccggaag cccggatttt gtcgttgatg aatatcgctg
     3421 cgtgatattt acccatggct gcttctggca tcatcatcac tgctatctgt ttaaagtgcc
     3481 tgcgactcga accgagttct ggctggagaa gataggtaaa aatgttgaac gcgatcgccg
     3541 cgatatcagt cgtttgcagg aactcggctg gcgcgtactg attgtctggg agtgtgcatt
     3601 acgtgggcgc gagaagctga cggatgaagc gcttaccgag cgtctggaag agtggatctg
     3661 cggcgaaggt gccagcgcgc agatcgacac gcaggggatt catttactcg cttgatgcgt
     3721 cctgaataac tggcgcaact acgggttttg ccgggaagag atattttccc aacgtgacca
     3781 gtaccaccgc gaagacaatt acgccgagcg ccagccattc aatcttcgac agcgtctctc
     3841 cgcccagtcc cgtacccagc aagaccgcga ccaccgggtt aacgtaggcg tagctggtgg
     3901 cgagagccgg actgacatta cggattaaat acatataagc gttgatggcg ataatcgaac
     3961 caaacagcgc cagatagccg accgcaagga agcctgaaag ggaagggagc gccgtcagtt
     4021 tttcacctgc aatcatcgac gcgatcatta acaccacgcc tgccgccagc atctcaatcg
     4081 cacccgccat catccctaca ggtaaggtaa tgcgcgagcc ataaaccgag ccaaacgccc
     4141 agctaatcga gccgattaaa atcagaatcg cgccccacgg attgccgctt aaatttccac
     4201 cgctattgag catgatgatt ccggcaagcc caatggcgat acccacccat tccaatttgc
     4261 gcgttttaat gccaaacagg cggctgaagc acagggtaaa gaggggcacg gttgcaacca
     4321 caacggcggc gatgccggaa ggaacatttt gatgctcggc aaccgtcacc atgccattac
     4381 cgacagccag caataacagg ccaatcagcg cggcattgag cagcggacgt agcgggggga
     4441 gcttgtgtcc gcgcagtagc aaaaatgcca tcaataaaat accggctgcc aggaatcgaa
     4501 cgcctgccat cattaacgga ggccagcttt ccacgccaat ccgaatgaca aaataggttg
     4561 agccccaaat gatatacaac gcaaacagcg cgccaaaaag cggtaacaac tggcggaaac
     4621 gcataatccc tcacggtgga aataaaaagg tggttcatag taaacgtgaa aatcattctg
     4681 ctggcgagag atataattgc atttgattgt taaaaaaatg ttgacctgtg aagcaagtat
     4741 cagagctgcc gtttttgctt catacttaca cccttcaaca ataaaaatga gagggaatgc
     4801 ttttggccgg gagtagttta ctgacgttgc tcgatgatat cgccacacta ctggacgata
     4861 tctccgtgat gggcaaactg gcggcgaaga aaaccgccgg tgtattaggg gatgacttat
     4921 cgctcaatgc gcaacaagtt tcaggcgtgc gggccaaccg ggaacttccc gtggtctggg
     4981 gcgtggcgaa aggatcgctg attaataaag tgattctggt gccgctggcg ctgatcatca
     5041 gtgcgtttat cccgtgggcg attacgcctc tgttgatgat tggtggcgcg tttctctgct
     5101 ttgaaggagt agagaaagtg ctgcatatgc tggaggcgcg taaacataaa gaagatccgg
     5161 cgcagagcca gcagcgtctg gagaagctgg cggcgcagga ttcgctgaag tttgaaaagg
     5221 acaaaataaa aggggcgatt cgtaccgatt ttatattgtc tgccgaaatc gtcgccatca
     5281 cgctggggat tgtggccgaa gcgccgttgc ttaatcaggt gctggtgctt tcaggcatcg
     5341 cgctggtagt gaccgtgggc gtctacggtc tggtaggggt tatcgttaag attgatgacc
     5401 tggggtattg gctggcggaa aaatccagcg cgctgatgca ggcattaggt aaagggttat
     5461 tgatcattgc gccctggctg atgaaagcgt tatcgattgt cggcacgctg gcgatgttcc
     5521 tcgtcggcgg cgggattgtg gtacatggta ttgcgccgct gcatcacgcc attgaacatt
     5581 tcgctgggca gcaaagtgca gtggtggcga tgatattacc gactgtttta aatctgattc
     5641 ttggatttat catcggcggc atcgtggtgc tgggagtgaa agccgtagcg aaaatacgcg
     5701 gtcaggcaca ttaatactcg cacaggctat tatgcaaaat tcgccatctt caactaaggt
     5761 gaacaagttt cactcgaaaa aaggaggcga gtatgagctt tatggttagt gaggaagtta
     5821 cggttaaaga gggcggcccg cggatgattg tcaccggata ctccagcggt atggttgagt
     5881 gtcgttggta tgacggttac ggggtcaagc gggaagcttt tcatgaaacc gagcttgttc
     5941 cgggggaggg gagtcgttct gcggaagaag tttgaaaggg tatcattaac accaggccgg
     6001 atcacttccg gcctggtgtg ccaatgcctg caatgaatga tagtcgcgtc ttatcatgcc
     6061 accattataa aattatcgct gttttgcggt acgctatcgc caggttatgc cagaatcata
     6121 aaaaagcagg ttgggagtcg tcagggtgca gcacgagaca aaaatggaaa accagagctg
     6181 gttgaaaaaa atcgcacgcc gcctggggcc tggtcatgtc gttaatctct gctttatcgt
     6241 ggtattgctt ttttccacct tgctgacctg gcgtgaagtg gtagtgctgg aagatgccta
     6301 tatctccagt cagcgtaatc atctggaaaa cgtagccaac gcgctcgata agcatttgca
     6361 gtataacgtc gacaaactga tctttttgcg taatggcatg cgcgaagctc tcgtagcgcc
     6421 actggatttc acttcactgc gtaatgctgt aaccgagttc gaacagcatc gcgacgagca
     6481 cgcctggcaa attgaactca accgacgacg caccctgtca gtcaatggcg tatcggatgc
     6541 attagtcagc gaggggaatc tcctgtctcg cgaaaatgaa agcctcgaca atgaaattac
     6601 cgctgcactg gaagttggtt acttgctgcg actggcgcac aacacctcgt cgatggttga
     6661 acaggcgatg tatgtctcgc gtgccggatt ttacgtttcg acgcagccga ccttgtttac
     6721 gcgcaatgta ccaacgcgtt attacggcta tgtcacccaa ccctggttta tcggccattc
     6781 gcaatgagaa aatcgtcacc gcgcggtacg ctggtttact tcgcaaccgg aacacgccag
     6841 caatactgaa ccgcaggtta ccgtcagtgt tccggtagac agtaataact actggtatgg
     6901 cgtgctgggg atgagtattc ccgtgcgtac catgcagcaa tttttaagaa acgccatcga
     6961 taaaaacctc gatggtgagt atcagctcta tgacagtaag ctgagatttt tgacctcttc
     7021 caatcctgac catccaacag ggaatatttt tgatcctcgt gaactggcct tgctggcgca
     7081 ggcgatggaa catgacacgc ggggcggcat tcgtatggac agtcgctatg ttagctggga
     7141 acgtctggac catttcgacg gtgtgctggt gcgcgtccat acgctaagcg aaggcgtgcg
     7201 cggcgatttc ggcagtatca gcattgcatt aaccctgctg tgggcgctct ttaccaccat
     7261 gttactcatc tcctggtatg tgattcgccg gatggttagc aacatgtatg ttctgcaaag
     7321 ctcgttgcag tggcaggcgt ggcacgacac cttaacccgt ttatataatc gtggcgcact
     7381 gtttgaaaaa gctcgtccgc tcgcgaaatt gtgtcagacg caccaacatc ctttttctgt
     7441 cattcaggtc gaccttgacc attttaaagc gattaatgac cgctttagtc atcaggcggg
     7501 cgaccgtgtt ctttctcatg ctgccggatt aattagcagt tccttgcgtg cgcaggacgt
     7561 tgccgggcgg gtcggtggtg aggagttttg tgtgattctg ccaggcgcga gtctgacgga
     7621 ggctgcggaa gtcgcagaac gtattcgcct gaagttaaat gaaaaagaga tgttgattgc
     7681 taagagtacg acgatacgca tcagtgcctc gttgggggta agtagcagcg aggaagccgg
     7741 tgattatgat tttgaacaac tccagtcact ggctgaccgt cggctttatc tcgctaaaca
     7801 ggccgggcgt aatcgggtat gcgcgagcga taacgcttaa cgagcggaga aaaaatggtc
     7861 cagcccttca cgccatcctt ccggtccttc acgctgcgtt cgccagacgc gggccggatc
     7921 ctcatcatgc agatgcaccc cttcacggtt tagccctttc acaatcaccg cgtaatccat
     7981 tacctccagt aagggcgcat cgtttggccc atcgcccagg ccaagtgtgg ttgggcgttt
     8041 gcctgataat tgttgatagg tcgcgataat ccagttggcg gcctgatctt ttccggcaga
     8101 ggcatccagg acgtgccaga agcgcgcacc ctgcataaac tgtaagccca gttcgttcag
     8161 acgagcggta aattgtgcca tacgctcgtc actgtcgcgc cagattagcg ttaccgacgc
     8221 ctcatgcagc tgcgtcagcg ccgcctggct acggcttaat cccgtccatt cggcgatggt
     8281 tgcatcgtcg acatcatcga aagtcgtgaa tttaaaatgt tctttctcgc gtagcgtatt
     8341 taaaacctgg ctgatttcgc catggctaat acctgagatg atgcgtggaa aaccgtctat
     8401 atcctgccat tgttcagcaa gctggatcac tgcgccattt tcggcaatca gtggtacccc
     8461 ttgtaacccc aacgtttttt gcaagtacag catttccgct gaagttttac tgctacagag
     8521 aatgacggga acattcgctt cgcgtaaacg gctgagccag ggggcagccg gttgccagtc
     8581 ataactatga ctgtccagca gggtgccatc aagatcgcta aaaaccagta gtggttgttg
     8641 aattgaaaac atggtcgcgc agttctcccc ttaccaggat gattctcaaa acagcacaaa
     8701 taatcaaaga tgattttttc gggagcgatc ccgttgacgc cagagccacc aaggggtgac
     8761 gcacgtcaca tttctattca taagtagcgt taatcattca tatcgcgaat attttcttgt
     8821 cagcgaaaaa aattgcggat aaggtgatga acacatcaga tttcctggtg taacgaattt
     8881 tttaagtgct tcttgcttaa gcaagtttca tcccgacccc ctcagggtcg ggattttttt
     8941 attgtgcatt caacgattca cttcagagac gctgaagtca tgaatatcca gttcgaaggc
     9001 atccgccaat tcacgccatg tatgatattc acgtccatcg acgctaacgt gttcagaatc
     9061 gttctggctg cgatgaactt atttcattga tcgccgccag cagggcatcg acatcgacgc
     9121 tgacctcacg ttttgcggta tcgctgtact cttttgcggt tttcatcatc tttcctcgca
     9181 accgttactc tgttgttgcc gccagtcgtt aagtccgcct ggcatctctt aagtatagac
     9241 cgtcgagaaa atcagcactc gcgcgcgcct ggcgctgcca gaaaaacgaa attgttctac
     9301 actggcacaa agccacagga ggaaaacgat gaaggtgaat gatcgggtaa cagtcaaaac
     9361 ggatggcggt ccgcgtcgtc ctggcgtggt actagcagtt gaggagttta gtgaaggcac
     9421 aatgtacctg gtttcgctgg aagactaccc gctcggcatc tggttcttta atgaagcagg
     9481 gcatcaggac ggtatctttg tggagaaagc agagtaatct tattcagcct gactggtggg
     9541 aaaccaccag tcagaatgtg ttagcgcatg ttgacaaaaa taccattagt cacattatcc
     9601 gtcagtcgga cgacatggta gataacctgt ttattatgcg ttttgatctt atgtttaata
     9661 ttacctttat gcgatgaaac ggtcttggct ttgatattca tttggtcaga gatttgaatg
     9721 gttccctgac ctgccatcca cattcgcaac atactcgatt cggttcggct caatgataac
     9781 gtcggcatat ttaaaaaaga ggttatcgtt gtctcttttt tcagaatatc gccaaggata
     9841 tcgtcgagag attccggttt aatcgattta gaacttatca ataaattttt tctgaccaat
     9901 agatattcat caaaatgaac attggcaatt gccataaaaa cgataaataa cgtattggga
     9961 tgttgattaa tgatgtgctt gatgtgctga ctgttagaag catcatggat gaaacagtcc
    10021 tcattaataa acaccactga agggcgctgt gaatcacaag ctatggcaag gtcatcaacg
    10081 gtttcaatgt cgttgatttc tcttttttta acccctctac tcaacagata cccggttaaa
    10141 cctagtcggg tgtaactaca taaatccata ataatcgttg acatggcata ccctcactca
    10201 atgcgtaacg ataattcccc ttacctgaat atttcatcat gactaaacgg aacaacatgg
    10261 gtcacctaat gcgccactct cgcgattttt caggcggact tactatcccg taaagtgttg
    10321 tataatttgc ctggaattgt cttaaagtaa atgttgcgat atgtgagtga gcttaaaaca
    10381 aatatttcgc cgcaggagta tcctggaaga tgttcgtagg tattattttt cggataatcc
    10441 ttaggataac atgataaacg ttacggaatt atattaatgg caattcacta ataatatcag
    10501 ccagcaaatt aaacatctca ctgaataaat gttcgcaaaa aggtgcaatt aacggcatta
    10561 atgccgccat taaagagata ccgacagtca gagttaatgg aaatccaata acaaaaatgg
    10621 ataattgcgg ggccatacga ttcagtaaac ctaatgccag attcagggtc agcagcagag
    10681 taatgagcgg taacgccagc atcagcccgt taaggaaaat caaactcccc gctttggtga
    10741 gtgccagaaa cgcattgctg ttcaacggtt cgccaccaat tggcagggtg tgaaaggtat
    10801 cgaccagcag tgaaatcaac cataaatgac cgttaaatgt caggaacagc agtaacgcca
    10861 gcatatccat gatacgcgct aaaacgggca tattgagatg gctggccgga tcgacaaacg
    10921 tcgcaaatga cagccccatt tgcagaccga taatttcgcc agcggttcgc acagcggcaa
    10981 aggcaaattg catggtaaaa ccaagcgcaa tgccgatcag gatctgctgc acggccagcc
    11041 acagagcaaa gaacgaaaaa acaggaacat cgttggcagg taatgatggg gcaatgacga
    11101 acgtgatcat cattgccagc cccagtttta cccgtttcgg cacgctgcgt tcgctcagaa
    11161 ttggtgcggt agaaatgagc gccagcacgc gcagtaacgg ccagaagtac aggcttaacc
    11221 aggaaagcca ttgatcgctt gtcacctgca tcattgtacg gcctacccga tgatatacgg
    11281 caggttagtg aacaaggtgc ggacgtaatc cagcaacaga ttgagcatcc acggtccggc
    11341 aataataatg gcaataaata cggcgatgat ttttggaata aacgacagcg tcatttcgtt
    11401 gatctgcgtg gcggcctgca aaatactgat gataaggccc gtgaccagcg ccaccagcaa
    11461 cagcggggca gccagtgcca gcgcgacttt catcgcttca gtccccatca tcatgaccga
    11521 ttcaggtgtc attttgcctc tctagctgta aaagctctgc gccagcgaac cgaccagcaa
    11581 ttgccagcca tccaccagta caaacagcat cagtttaaag ggcagagcaa tggtggcggg
    11641 gggaccatca tcatccccaa tgccatcaac acgctggcaa tcaccaggtc gataatcaaa
    11701 aaaggaatga aaatcgtgaa gcctatctga aatgcggttt tcaactcgct ggtcacgtag
    11761 gccgggcgca aaatgcgcat cggcacggct tcaggtccct gcaacgggcc ggtattcgct
    11821 agtctggcaa acaaccctaa atctgcctca cgggtctgac gcagcataaa ctcacgtagc
    11881 ggctgcgccc ctttttccag cgcctcctgc attgatattt tctcttcgct gaatggctgg
    11941 tacgcatcga cataaatttt gtcgatcacc ggtgacataa taaaaaaggt caaaaatagt
    12001 gccagcccca gcaatacctg gttaggtggc gcggagggcg ttcccagcgc gttacgcaat
    12061 aaaccaaaaa caatgatgat gcgggtgaaa ctggtcatca tcagtaaaat tgccggaata
    12121 aacgtcaacg aggtgatgaa caccagcgtc tgcaccggga gcgaccagct ttgtccaccg
    12181 ccaggcagcg gctggctggt gatacccggc agttgcgcga aggcgagggg cgtaaccagc
    12241 cagagaagga caggtgcgac agacaacaaa cgacgcatca ggatctccca ctacgcttaa
    12301 gcaaattttt catgaccgac tgaaaatcgg tctgcggtat ctcttctgtt ggtgctgaag
    12361 ggggaagttt atgcagcaga ttgatttgcc ctgcggtaac gccgagcacc agccgtgcat
    12421 cttccacatc gaccaccaca acccgttcac gcgcgcccag cgaagcactg gcgctaattt
    12481 tcagaccgtt aacgccagtg cgtttcgggg caaatcccaa ccgttttacc tgccaggcag
    12541 cagcgaggat cagggcaata atggcgatga gtgcgccgct gacctgcagc agtggcgcag
    12601 cagaaaccgg cgtggaagat tgcacagtag cgtggttatt catcactaac ggctcaggcg
    12661 atgcattcgc tcagacggag taatgatatc ggtgatccgc acgccatatt tatcggcaac
    12721 gaccaccact tcgccctggg cgattaaata accgttgatc agaatatcca gtggttcgcc
    12781 cgccagaccg tccagcgcca cgacggaccc ttgcgtcaga cgcaacagct ctttgatggt
    12841 catccgcgta cggcccagct cgacggtcag cttgaccgga atatccatta tcaggtcgat
    12901 atcctgcaac gttccgctga catcaccacc gccaaattgc tggaacaccg cgtcggcagc
    12961 gcttttgctg ctggttgatt tttgttcgct caacgcttca gcccacagat cgtccattgc
    13021 gccgttgttg tcatcggccg gattattcat gtcactcatt tgggctgttc ctcgttcaga
    13081 gaatttaaaa tcgggttaat caaatgttct atccgtaacg catactgacc gttgagagtg
    13141 ccgtactgac tggtcagcac cgggacgccg tcaacatggg cgatgatgcg atcaggtttt
    13201 tctatcggca ggacgtcgcc gggtttcagt tttaaaatct gcgacaggcg tagcgagata
    13261 tcggcaaagt tggcgaccag ctccagctgt gaatgctgca cctggcgcac caggttatcg
    13321 cgccagttct gatcttcatt acgcgagttt tccagcggcg ggttaaccaa caattcccgt
    13381 agcggctcga tcatgctgaa tggcagacag atattaaatt cgccggtcag gttgccaatc
    13441 tccacatgga acggcgtgtt aaccacaatg tcgttcggcg aggtggtgat attggtaaat
    13501 ttcacctgca tttccgaacg cacgtactca acttccagcg gattaatcgc cttccaggcg
    13561 tcgctatagc cttcaagcgc cagctttaac atgcggttga tgacgcgctg ttcggtatgg
    13621 gtaaactcgc gaccttccac tttggtcggg aagcgtccat cgccgccaaa caggttatcc
    13681 acggcgataa acaccagact cggtgaaaac accaccagcc ctgtgccgcg cagcggtttc
    13741 agatggataa ggttcaggtt ggtcggcacc ggcaggttgc gggcaaattc atggtacggc
    13801 tgaatgcgga tggccccgac ggttatatcc gggctacgac gcagcaggtt gaacagcccc
    13861 atacgaaaat ggcgggcaaa gcgctcatta atgatttcca gcgcctgcaa acgttcgcgc
    13921 acaacccgtc gttgggtatt cggatcgtac ggacgaatgt cactttcgcc gctaacactg
    13981 gctgtcggtt cgtctttgac ttcgctgtca ccattcaaca gcgcatcaat ttcagcttga
    14041 gaaagaatac tatcgcccat gtcgttatcg cagaataaaa gcggtataca gcacgtcggt
    14101 gacatcctgt ttcggttgcc cggcaacaag cggggtggaa agcgtggttt taatctcggc
    14161 aatcaggttt ttcttgcctt cttctgtcgc cagtacggca gcatcctgac gcgaaaacag
    14221 taacagcaaa cggctacgga cttccggcaa atactcactc agccgcgagc gggtagcttc
    14281 atctttcagg cgcagggtta tgccgatata aagcacgcga tccgcatcgc ccaaattgac
    14341 cgtgaaggta ttcagcgcgt agaagaccgg ggagggtacg acgcgttgct gcgctttgtc
    14401 gtcagcggca acctgatgcg aatgccagta gctgtaacct gcgctggcac aggccgcgag
    14461 ggtaatgaat accagaatcg ggatccaaag cgatcgcttg cttttcttgc ttatcgcgta
    14521 atcagtcatg tgttgcggtc ttcctgtgtc gctactgctt atcggctaat tatcctgcgt
    14581 tttgagcgca acaaagcggg gaaaagacgc ggattacggt gctacctctg acgttaggcg
    14641 aaaatatcaa cgccgctgtt gcctgttaca cgcccttgta aagagacggg aaccggaagc
    14701 gtatcgtcgt cttcccccgc cagaggttca tggtttactg tgcgttggct ttgctgttgt
    14761 tgggaagcgg cctgctgctg accactaaag ctttcgccac tgatgttgct ttgccctaac
    14821 tgaatgccac tttcggccag ctgcgtacgc agtaccggaa gcgctgcttc cagcgcggcg
    14881 cgtacatgct gatgcggtga aaccatctgg atttgcgcct ggttatcatc cactttgagg
    14941 gagatttgca cttcacctaa atcctgcggg tgcagacgca actctgcact ttgttgcccc
    15001 tggcgggtga acagcgaaat atgctggctt aatgattgtt gccattcgtg agaacccagc
    15061 ggtgcactca aaacaggcgc ggcgacggtg ggcagtggct gtgtctggtg tggagtaatt
    15121 agcgggctgg cggcagcggt caccggtgac ggtgtgctga tgacttccgc tttactctgg
    15181 gcttctgcta ccagcggtgt taatggctga gctggcgtgc cgggggcatc atcaggctgt
    15241 gctgttgtga gttgcgcaga agtcagtttt gtgaagagcg ttggtttctc tgccggtaac
    15301 acggttgacg gcacatcagt cactttgggc gtattgtcaa aacccggcaa catcgcaaaa
    15361 agggcgctca ggcttgcggt gacgtcttca ttcagatcat ccgctttttc gtcttttgtc
    15421 gtattttggt cagccaccgc agccaacgtc atcgtctgag cggtggttaa cggtgttgat
    15481 gtggattgtt cgtcgttgat gacaggcagt gtttcatcca cggggatcag taaatccgct
    15541 tgttgcgcgt cggcaagaat atcgctgatc agcggctcgc cttttgtcgt gggcttatct
    15601 gttgccacca gcaactgggg ggccgctttg tcggtagttg tctcgcctgc taatgcttcg
    15661 ctcaacaacg cgagaaaatc ttgtgcagca tcgctggctt tgccgccagg caatgtggtg
    15721 gtgtcaacgt cggcggtaat taagggcgct aagcgaatca ttcaggtttc ctcatggcgg
    15781 cgcgctgggc gaactcatcc atctttttct gatcgaggcg gttttctgca agcagtgccg
    15841 ccgtggatag ccgttcctgc agtgtctgcc aggcctgcaa acgttgtttc ttttctcgcc
    15901 agctgttcag ggcaatgtca actttctgcg tccactgatt aagttgctgg cgatgctgag
    15961 taatggcttt ttccagcgtc tggataaact gctgatagtt gatccagcgg ttgctggtca
    16021 tcccggcact catatcgctg ttgaggttat tgcgatattc attctgataa tcgatcagca
    16081 ttttgagctg ttcttccgcc tgctgacacc cgcgacgcat ttcacccagc aggcgcgcgg
    16141 catcctctac ctctttttct gccagatctt tcagggtcgc cagcgcgcca tgttctgcca
    16201 tctgccgtta tctcctgggt tatgacactg tcgggaaaat acgctccagc ccctggagag
    16261 acgcttccca gtccgcgcgt tcaaaaatgc cttgttgcaa atagccctcc agctgcggcc
    16321 acagggcgat ggctttgtcg agcatcggat cgctgccttt ggcatacgcg ccgacgctaa
    16381 ccagatcgcg gttacgctga aaactcgaca acagctgttt gaaggtgcgc actcgcgcgt
    16441 aatgttgctc actgatcaac gccgtcattg cgcggctgat cgacgcttca atatcgatag
    16501 ccggatagtg cccggcttcc gccagtcggc gagacagcac aatgtgaccg tcgaggattg
    16561 cccgcgcaga gtcggcaatg gggtcctgct ggtcatcgcc ttcagtgagc acggtataaa
    16621 acgcggtaat cgatccgccg ccgctaatgc catttccggc acgctcgacc agtgccggta
    16681 atttggcaaa caccgacggg ggataacctt tagtggcggg tggttcgcca atcgccagcg
    16741 caatttcacg ctgggccatc gcgtagcggg tgagggagtc cataatcagc aacacatgct
    16801 gaccacgatc gcgaaaatct tcggcaatgc gcgtggcata ggcggcaccc tgcattcgca
    16861 ggagaggaga aacatccgcc ggagcggcaa tcaccacgga gcgtgcacgc ccttcggcac
    16921 cgaggatatt ctcaataaaa tcttttactt cgcgtccgcg ttcaccaatc aaacccacga
    16981 caatgacatc ggcgcgggtg taacgtgcca tcatccccag cagcacactt ttaccaacgc
    17041 cggacccggc aaacagcccc atacgctgcc cacgcccaac ggtaagcagg gcattgattg
    17101 ggcgcacgcc ggtgtccagc acatgttcaa tcggtgtacg ttgcaacggg ttaaatggcg
    17161 gggtaatcag cgcaccggtt tccgtcgtat cgggggaggc catcgagcgg tttaccgctg
    17221 ccgtccagaa cacgacctaa taacgccgga ccgagcggta actgtttgcc gctttgcagc
    17281 ccttctgccg aaatgttttt ggcataaaca cgcgcgccgg gcaggacacc ttcgacttcc
    17341 tccagcggca ttaaaaacag ccgttgaccg ttaaagccaa cgacttcact ttctacttcg
    17401 tgcgtttcag tgccgttctg gcgctcaatc acacaggttg cgccgagcgg caattgtaat
    17461 ccggtggctt ccagcaccag cccggtagcg cgggttaatc gcccgtagcg acgtaccgca
    17521 ggcaactgcg ccattttggc ttcaaagtta tccagcgtgg ttagccagcg agtcaggcgc
    17581 gtggtcatta caccactcct ggtgctgcca gacggcagag ttcttgccag cgagtggcga
    17641 cactggcgtc gagatcgcct tcatcggcgg agactttaca gccgccagga tggagggtgg
    17701 gatcgccccg caagcgccag ccatgcaaac ttaaggtagc gccgagcata tcatccacac
    17761 gttgcagatc atccgggtgc acgcgcagct gtggtttacc gctgaataac ggttcttgct
    17821 gcaacaactg ttggatctgt ttgatgagtg ccgagttatc cactgttggc gtctgaccga
    17881 tgacctgacg tgctgcctcc agcgccatct gcatcaggcg cgaagc
//
LOCUS       DADMJB010000078        17869 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.078, whole genome shotgun sequence.
ACCESSION   DADMJB010000078 DADMJB010000000
VERSION     DADMJB010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17869
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.078"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            1..679
                     /gene="csgG"
                     /locus_tag="JN078_002331"
                     /pseudo
     CDS             1..679
                     /gene="csgG"
                     /locus_tag="JN078_002331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309441.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="curli production assembly/transport protein
                     CsgG"
     gene            complement(743..1234)
                     /locus_tag="JN078_002332"
     CDS             complement(743..1234)
                     /locus_tag="JN078_002332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415554.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1097 domain-containing protein"
                     /protein_id="HAY9041513.1"
                     /translation="MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQ
                     GGLKGLAISAATLLSGVVWAMVIIYGSALAPHLEILGYVITGIVAFLMCIQAKQLLLS
                     FVPGTFIGACATFAGQGDWKLVLPSLALGLVFGYAMKNSGLWLAARSAKTAHREQEIK
                     NKA"
     gene            complement(1336..1890)
                     /locus_tag="JN078_002333"
     CDS             complement(1336..1890)
                     /locus_tag="JN078_002333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HAY9041514.1"
                     /translation="MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQ
                     DELLTRLQKSCDMAQVSADYNALFIGDECAVPPYRSAWVEDATEAEVRAFLSERGMPL
                     ADTPADHIGTLLLAASWMEDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFW
                     RTMAPLTRDAISAMWDELEEDSEE"
     gene            complement(1914..2651)
                     /locus_tag="JN078_002334"
     CDS             complement(1914..2651)
                     /locus_tag="JN078_002334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase"
                     /protein_id="HAY9041515.1"
                     /translation="MYPVDLHMHTVASTHAYSTLSDYIAQAKQKGIKLFAITDHGPDM
                     EDAPHHWHFINMRIWPRVVDGVGILRGIEANIKNVDGEIDCSGKMFDSLDLIIAGFHE
                     PVFAPHDKATNTQAMIATIASGNVHIISHPGNPKYEIDVKAVAEAAAKHQVALEINNS
                     SFLHSRKGSEDNCRAVAAAVRDAGGWVALGSDSHTAFTMGEFEECLKILDAVDFPPER
                     ILNVSPRRLLNFLESRGMAPIAEFADL"
     gene            complement(2706..3644)
                     /gene="ghrA"
                     /locus_tag="JN078_002335"
     CDS             complement(2706..3644)
                     /gene="ghrA"
                     /locus_tag="JN078_002335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415551.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate/hydroxypyruvate reductase GhrA"
                     /protein_id="HAY9041516.1"
                     /translation="MDIIFYHPTFDTQWWIEALRKAIPQARVRAWKSGDNDSADYALV
                     WHPPVEMLAGRDLKAVFALGAGVDSILSKLQAHPEMLNPSVPLFRLEDTGMGEQMQEY
                     AVSQVLHWFRRFDDYRIQQNSSHWQPLPEYHWEDFTIGILGAGVLGSKVAQSLQTWRF
                     PLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPD
                     GAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHV
                     AAITRPAEAVEYISRTIAQLEKGERVCGQVDRARGY"
     gene            3878..3965
                     /locus_tag="JN078_002336"
     tRNA            3878..3965
                     /locus_tag="JN078_002336"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3912..3914,aa:Ser,seq:gga)
     gene            4010..4146
                     /locus_tag="JN078_002337"
     ncRNA           4010..4146
                     /ncRNA_class="other"
                     /locus_tag="JN078_002337"
                     /product="RtT sRNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00391"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="rtT sRNA, processed from tyrT transcript; Derived
                     by automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00391"
     gene            complement(4237..4692)
                     /locus_tag="JN078_002338"
     CDS             complement(4237..4692)
                     /locus_tag="JN078_002338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001462353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2726 domain-containing protein"
                     /protein_id="HAY9041517.1"
                     /translation="MVAEGILLERKEWLITRCEKMYFDNLEKWFGHYCHIHCQVSLGR
                     LINFPEQPEFSEEERKRFFAIYNGMAMDYVLVSKKNNKIVCVIELDDPSHERADRIIR
                     DRWLDTIMTLARVPFVRASVTKLEEIPPVWETRDKIRPLVAATKSEPVH"
     gene            complement(5504..6568)
                     /gene="phoH"
                     /locus_tag="JN078_002339"
     CDS             complement(5504..6568)
                     /gene="phoH"
                     /locus_tag="JN078_002339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate starvation-inducible protein PhoH"
                     /protein_id="HAY9041518.1"
                     /translation="MVTSCTGHVLDNQRATTRGVFSSGSHLVTLHFQPHPFFSCVTDA
                     VNGARSRFSAFYPKANYGLQGSQPSDVRAHNRAANGACDEYKQLKVLSMGRQKAVIKA
                     RREAKRVLRRDSRSHKQREEESVTSLVQMSGVEAIGMARDSRDTSPILARNEAQLHYL
                     KAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD
                     IAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDE
                     AQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLPRGVCSGLSDALERFEEDEMVGIVR
                     FGKEDCVRSALCQRTLHAYS"
     gene            complement(6914..8185)
                     /gene="efeB"
                     /locus_tag="JN078_002340"
     CDS             complement(6914..8185)
                     /gene="efeB"
                     /locus_tag="JN078_002340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deferrochelatase/peroxidase EfeB"
                     /protein_id="HAY9041519.1"
                     /translation="MQYKDENGVNEPSRRRLLKVIGALALAGSCPVAHAQKTQSAPGT
                     LSPDARNEKQPFYGEHQAGILTPQQAAMMLVAFDVLASDKADLERLFRLLTQRFAFLT
                     QGGAAPETPNPRLPPLDSGILGGYIAPDNLTITLSVGHSLFDERFGLAPQMPKKLQKM
                     TRFPNDSLDAALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHA
                     ARSKGKETPINLLGFKDGTANPDSQNDKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQ
                     FRVEFWDRTPLKEQQTIFGRDKQTGAPLGMQHEHDVPDYASDPEGKVIALDSHIRLAN
                     PRTAESESSLMLRRGYSYSLGVTNSGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALE
                     EYVKPIGGGYFFSLPGVKDANDYLGSALLRV"
     gene            complement(8191..9318)
                     /locus_tag="JN078_002341"
     CDS             complement(8191..9318)
                     /locus_tag="JN078_002341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake system protein EfeO"
                     /protein_id="HAY9041520.1"
                     /translation="MTINFCRNALQLSVAALFSSAFMANAADVPQVKVTVTDKQCEPM
                     TITVNAGKTQFIIQNHSQKALEWEILKGVMVVEERENIAPGFSQKMTANLQPGEYDMT
                     CGLLTNPKGKLIVKGEATADAAQSDALLSLGGAITAYKAYVMAETTQLVTDTKAFTDA
                     IKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHR
                     LEKALFGDNTTKGMDQYAEQLYTDVVDLQKRISELAFPPSKVVGGAAGLIEEVAASKI
                     SGEEDRYSHTDLWDFQANVEGSQKIVDLLRPQLQKANPELLAKVDANFKKVDTILAKY
                     RTKDGFETYDKLTDADRNALKGPITAQAEDLAQLRGVLGLD"
     gene            complement(9376..10204)
                     /locus_tag="JN078_002342"
                     /pseudo
     CDS             complement(9376..10204)
                     /locus_tag="JN078_002342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309290.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family protein"
     gene            10240..10542
                     /locus_tag="JN078_002343"
     CDS             10240..10542
                     /locus_tag="JN078_002343"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041521.1"
                     /translation="MQRKVNRSDSDYHYGKEKYKRNVYKMMLECKQREVMPGDINDYS
                     RVERWDCLQRTMCSCRMPRKRHIQPTKLSRLNASELPCKTDKRVYQAISSIRDYQI"
     gene            complement(10874..12382)
                     /gene="putP"
                     /locus_tag="JN078_002344"
     CDS             complement(10874..12382)
                     /gene="putP"
                     /locus_tag="JN078_002344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HAY9041522.1"
                     /translation="MAISTPMLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGP
                     FVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTE
                     YNNNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSY
                     ETALWAGAAATILYTFIGGFLAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEV
                     IKQKSIENVDMLKGLNFVAIISLMGWGLGYFGQPHILARFMAADSHHSIVHARRISMT
                     WMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAI
                     LAAVMSTLSCQLLVCSSAITEDLYKAFLRKHASQKELVWVGRVMVLVVALVAIALAAN
                     PENRVLGLVSYAWAGFGAAFGPVVLFSVMWSRMTRNGALAGMIIGALTVIVWKQFGWL
                     GLYEIIPGFIFGSIGIVVFSLLGKAPSAAMQKRFAEADAHYHSAPPSRLQES"
     gene            complement(12541..12750)
                     /locus_tag="JN078_002345"
     CDS             complement(12541..12750)
                     /locus_tag="JN078_002345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041523.1"
                     /translation="MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQ
                     LTFLKGATAKNVRECNLMKNSVAEH"
     gene            12805..16767
                     /gene="putA"
                     /locus_tag="JN078_002346"
     CDS             12805..16767
                     /gene="putA"
                     /locus_tag="JN078_002346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001462364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trifunctional transcriptional regulator/proline
                     dehydrogenase/L-glutamate gamma-semialdehyde
                     dehydrogenase"
                     /protein_id="HAY9041524.1"
                     /translation="MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQL
                     ENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRP
                     ETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQ
                     EGVALMCLAEALLRIPDKATRDALIRDKISNCNWQSHIGRSPSLFVNAATWGLLFTGK
                     LVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLE
                     EKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALH
                     PRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLENLCFEPE
                     LAGWNGIGFVIQAYQKRCPLVIDYLVDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGL
                     EGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQY
                     EFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTYETLLAYLVRRLLENGANTSF
                     VNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDL
                     ANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGFVREATPR
                     EVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAI
                     AEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNS
                     VLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGQGETVGAQLTGDDRVRGVMFTGS
                     TEVATLLQCNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAG
                     QRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHI
                     QTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELHKEVFGPVLHVVRYN
                     RNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPF
                     GGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNAL
                     REWAANRPELQALCTQYGELAQAGIQRLLPGPTGERNTWTLLPRERVLCIADDEQDAL
                     TQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDS
                     DQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
                     "
     gene            complement(16807..17445)
                     /gene="rutR"
                     /locus_tag="JN078_002347"
     CDS             complement(16807..17445)
                     /gene="rutR"
                     /locus_tag="JN078_002347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator RutR"
                     /protein_id="HAY9041525.1"
                     /translation="MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQI
                     AELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKL
                     EVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQ
                     HLIFIIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR"
     gene            17733..>17869
                     /locus_tag="JN078_002348"
     CDS             17733..>17869
                     /locus_tag="JN078_002348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine utilization protein A"
                     /protein_id="HAY9041526.1"
                     /translation="MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDF
                     AL"
BASE COUNT         4489 a         4820 c         4380 g         4180 t
ORIGIN      
        1 ggtatacaac attcaggacg aaaccgggca atttaaaccc tacccggcaa gtaacttctc
       61 cactgctgtt ccgcaaagcg ccacggcaat gctggtcacg gcattgaaag attctcgctg
      121 gtttataccg ctggagcgct agggcttaca aaacctgctt aacgagcgca agattattcg
      181 tgcggcacaa gaaaacggca cggttgccat taataaccga atcccgctgc aatctttaac
      241 ggcggcaaat attatggttg aaggttcgat tatcggttat gaaagcaacg ttaaatcggg
      301 cggtgttggg gcaagatatt ttgggatcgg tgcagacacg caataccagc tcgatcagat
      361 tgccgtgaac ctgcgtgtcg tcaatgtgag taccggtgag atcctctcct cggtgaacac
      421 cagtaagacg atactttcct atgaagttca ggccggggtt ttccgcttta ttgactacca
      481 gcgcttgctg gaaggggaag tgggttacac ctcaaacgaa cccgttatgc tgtgtctgat
      541 gtcggctatc gaaacagggg tcattttcct gattaatgat ggtatcgacc gtggtctgtg
      601 ggatttgcaa aataaagcag aacggcagaa tgacattctg gtgaaatacc gccatatgtc
      661 ggttccaccg gaatcctgac agataaaaaa gccggaatta tcatccggca ttttactgtt
      721 taagcgaaag cgtgagtgcc cctcacgctt tatttttgat ttcctgctca cggtgagccg
      781 tctttgcact acgcgccgcc agccacaggc cgctgttttt cattgcgtaa ccaaatacca
      841 gcccaagcgc cagcgaaggt aacaccagtt tccagtcacc ctgcccggca aacgtcgcgc
      901 atgcgcctat aaacgtcccc ggaacaaatg aaagcagcag ctgtttggcc tgaatacaca
      961 tcagaaacgc cacaataccg gttatgacat aaccgagaat ttccagatgt ggtgccagtg
     1021 cactaccgta aataatgacc atcgcccaca ccacgccact aagcagggtt gcagcggaga
     1081 tcgccagccc tttcagccca ccttgcgggc aggcaaagta ggccgtacag cccaggaagc
     1141 ccgcccagct tagtaagccc agggaaacag ccacccatcc ccagataccg gagagaatgc
     1201 ctgttgtgat tgcaatagag agaagtatgt tcatgccgcg catgatagca gaaaacgcgg
     1261 ccatgaatga gatcgagcac acattttatg caacaacaaa ttatctgttg cagttatgag
     1321 tgacgatgat cacatttact cttcagaatc ttcttccagc tcgtcccaca ttgcactaat
     1381 ggcatcacgg gttagcggtg ccatggtgcg ccagaaaggc gtggttgcat gggcctccac
     1441 tttgccgagg aacgcaccac accagggtaa cagatactca ctgaacagtg tttccagtgc
     1501 ttcgctctca tcttccgttg actgatcttc catccaggaa gccgcaagca gcaatgtgcc
     1561 gatgtgatcg gctggcgtat ccgccagtgg catccctcgt tcggaaagaa aagcgcgcac
     1621 ttccgcttcc gttgcgtcct caacccatgc gctacgatat ggcggcacgg cacattcatc
     1681 gccgataaac aacgcattgt aatcggcaga gacttgcgcc atatcacagc ttttctgtaa
     1741 acgcgtcagt aactcatcct gctccagtgg ccagttcgca gccagtttcc cctcacgaat
     1801 cagggtaaac agcggcacca gtaaaggatc ttgcggttgg cggtaataga gcgaacccag
     1861 cacacgacag aggatagaaa actcgttcat taatatattt ccattactag taattaaagg
     1921 tctgcaaatt ccgcaatcgg tgccataccg cgagattcaa ggaagttcag taagcggcgc
     1981 ggagaaacat tcaaaatgcg ctctggcgga aaatctaccg cgtcgaggat tttaagacac
     2041 tcttcaaatt cccccatggt aaacgcggtg tgagaatccg agcctaatgc cacccaacct
     2101 ccagcatcac gtaccgctgc ggctaccgca cgacagttgt cttcactgcc cttacgtgag
     2161 tgtaaaaatg aagaattatt gatttccagc gccacctgat gtttcgcggc tgcttcagca
     2221 acggctttca catctatttc atatttggga tttccgggat ggcttattat atgcacattg
     2281 ccgctggcga tagtggcgat catcgcttgt gtattggtcg ctttgtcatg tggtgcaaaa
     2341 accggctcat gaaaaccggc aataatcaga tccagcgagt caaacatttt accgctgcaa
     2401 tcaatttcac catcaacatt tttaatgtta gcttcgatgc cgcgcaggat ccctacccca
     2461 tcaaccactc gcggccagat acgcatgtta atgaagtgcc agtgatgcgg agcatcttcc
     2521 atatccgggc catgatcggt gatcgcaaaa agtttaatgc ccttttgttt ggcctgggca
     2581 atgtaatcac tcaatgtgct atatgcatgt gtgctggcaa cggtatgcat atgaaggtcg
     2641 acgggataca taactctctc ctgtattcaa ttcccgccaa ggatagcagg aatcctgatg
     2701 ctttattagt agccgcgtgc gcggtcgact tgcccgcaga ccctctcccc tttttcgagc
     2761 tgggcaatgg tgcgagaaat gtactccaca gcttcagcgg gacgggtaat cgcggcgaca
     2821 tgtggtgtta tcgtcacgcg tggatgttgc cagagcggac tttcaggcgg taagggttca
     2881 cgattaaaaa catccaacat tgcgccttta actttgccgc tatccagcgc cgcgagcagg
     2941 tcatcttcca caacatgaac accacgcgcc aggttgagga gatacgcgcc atccggtaat
     3001 ttttcgagta attgttgatt aataatgccg acggtttcag gggtattcgg taacaaatta
     3061 atcaataccc gacattggct cagaaatgca gacagttctt cccgtccggc aaagctttgc
     3121 acgccaggcc acgatttacg ggttcgactc cagcaacgca gcggaaagcg ccaggtttgc
     3181 agactctgag caactttact gcccagtacg cctgcgccca aaatgccgat ggtaaaatct
     3241 tcccaatgat attcaggcag cggttgccaa tgcgaactat tttgctggat gcgataatcg
     3301 tcaaaacgtc gaaaccaatg cagcacctga ctgacagcat attcctgcat ttgctcgccc
     3361 ataccagtat cttccaggcg aaaaagtgga acagaagggt tcagcatttc agggtgtgcc
     3421 tgtagcttgc tcaaaataga atcaacaccg gccccgagtg cgaacaccgc tttaagatcg
     3481 cgccctgcca gcatttcaac aggaggatgc cagactaaag cataatcagc agagtcatta
     3541 tctccgcttt tccatgctct gactcttgcc tgaggaatag ctttgcgcag tgcctcaatc
     3601 caccattggg tatcgaacgt tgggtgataa aagatgatat ccatactgac tcccgaaaag
     3661 cgttgtgcga aatttattcg cacttatcgt tatgatctac aaaggccacc agcataacaa
     3721 atccgtggtc ggtggcaaaa aaagcagatt tcgcttatta aaaccacaca ttgattgaag
     3781 tttgaataaa cgcgcgattt tttcaaaaag tttgttgacc tcaggtcatg atttccctaa
     3841 attagcgccc gttccagcaa gacaggaaca acaatttggt gaggtgtccg agcggttgaa
     3901 ggagcacgcc tggaaagtgt gtatacggca acgtatcggg ggttcgaatc cccccctcac
     3961 cgccatattt aaagaagagc tcgtacgaaa gtacgggctt ttttttcgta tattgcacac
     4021 accgggggga tgagaagccc cgaccggggt tcgacaactg gcgacagcca gttggacaga
     4081 ccgtgaacgc agtgagcggg ctgcccgcag ggcgagcgaa gcgagtcaat ccccccctca
     4141 ccgccatctt taaagaagag ctcgtacgaa ggtacgggct ttttttcgta tattgcacac
     4201 accgggggga tgagaagccc cgaccgggat acttagttaa tgcaccggtt cactctttgt
     4261 cgccgcgact aatgggcgaa ttttgtcacg agtctcccag accggaggaa tttcctccaa
     4321 tttagtgaca gaagctcgta caaaaggcac ccgtgcaaga gtcataattg tatccaacca
     4381 acggtcacga ataatgcgat ccgccctttc atgactcggg tcatccagct caataacaca
     4441 gactatttta ttgttcttct ttgaaaccag aacataatcc attgccatgc cattataaat
     4501 tgcaaagaaa cgctttcttt cttcttcgct aaactcaggt tgttctggaa agttgatcaa
     4561 gcgccccaga gagacctggc aatggatatg acaataatgt ccaaaccatt tttccagatt
     4621 atcgaaatac attttttcac aacgagtgat taaccactct tttctttcca ataaaatacc
     4681 ttcggcaacc attccctgaa ataactcatc tcgctcttgc caacgagagt cacgataggt
     4741 tttctgcggt atatagctcc ttgtcgacgc cttagcggca ggggaagttg cagatgaagg
     4801 gacgggttgc gatttagcga tgattaccga tgaggcaact tttcggagtg tcaattttct
     4861 ggcaacagca aaaccggcga taaatgcaat tgtcaaacaa gttacaaaag ccataaagct
     4921 cataattaat tttcacctat ccatgttgat tatatttcat taccaatgtt actcgctgca
     4981 gcgtgttaca tgccaacaat gcaacgatca atatatagtt agtatcatgt tttgattatt
     5041 acaaccatcc ctatttagcc attgcggctt gccttccaca aaaaaataac aacacacaat
     5101 attagcaaag aattaattaa gattaacctt acatttataa tattatccct aaagaataaa
     5161 tcagaggaat atattcggtg ttaaacagtc agtcaaagta tagcccattg ttgattaaac
     5221 ctcataagca aaattggcac cagatctcct gtacaggttg aatggccgaa aaaagatagg
     5281 cagatgctca tttttttggc ttctggaaga aaaactctcc gcgctggcag tattacactg
     5341 gtctgatgct atgacgaaaa atgcctggta agagtatcta aaccagactc cagttcagct
     5401 tatcaacacg ctcaaagtcg cccccctgaa cgctaacctg aagtgaaaat ctgttgaaat
     5461 aaaacaaagc ccggttcgcc cgggctctgc accgataaca cacttaactg tatgcatgca
     5521 gcgtacgttg gcaaagtgcc gaacgtacgc aatcctcttt tccgaaccgg acgatcccaa
     5581 ccatttcatc ttcttcgaaa cgttccagcg cgtcacttaa tccggagcac acgccgcgag
     5641 gcaaatcgca ttgcgtgata tcaccgttga cgataaccgt cacgttctcc ccgaggcggg
     5701 ttaaaaacat tttcatttgc gcggcagtca cattctgcgc ctcgtcaaga atgacgactg
     5761 cattttcaaa ggtacgtcca cgcatatagg cgaacggcgc gatttccacc ttccctattt
     5821 ccggtcgcag gcagtactgc ataaaggaag cccctaagcg ccggaccagc acgtcgtaga
     5881 ccgggcgaaa atagggagca aacttttctg cgatatcacc aggtaagaag ccaagatctt
     5941 catcggcttg cagaactgga cgggtgacga taatcctgtc gacatcctta tgtatcaggg
     6001 cctctgccgc ttttgctgcg ctgatccagg tttttccgca cccggcttcg cccgtggcga
     6061 atatcagctg cttactctca atagccttca gatagtgcaa ttgcgcttca tttcgcgcga
     6121 ggatgggcga ggtatcgcga ctgtcgcggg ccataccaat ggcttctacg ccgctcatct
     6181 gcacaagcga ggtgaccgat tcttcttcac gctgcttatg gctgcgcgaa tcccgtctca
     6241 gcacacgttt tgcctcgcga cgagctttga tcactgcttt ttgtcttccc atggagagca
     6301 ccttgagttg tttgtattca tcacacgcgc cgttggcagc gcgattatgc gcacgaacat
     6361 cagagggttg gcttccttgt aagccatagt ttgcttttgg ataaaatgcc gaaaaacggc
     6421 tacgcgcacc gtttacggcg tcggtaacac atgaaaagaa aggatgaggt tgaaaatgca
     6481 aagtgacgag atgactaccg gaggagaaaa ctccgcgagt ggtggcgcgt tgattatcta
     6541 aaacatgtcc agtacaggac gttaccatcc gcgatctcca tagtgactga ctatcactgc
     6601 cgggaacttc cgctgctact taataagtac aacagatctc gcattttatt gcaacaatat
     6661 atttacttat atttaactat aaaacactat ttcagtgaca ttagtttcta ctggaaagat
     6721 gacagagtga tgacagtgat gaaaaaagct gtgtgctttc agcaggattt gcatcaggca
     6781 tcagtgcacg atcgccggat gcggcgtgaa cgccttatcc agcctaccaa acccgcactg
     6841 attgtaggca tgataagacg cgcaagcgtc gcatcaggca tctgcgcaca aatgccttat
     6901 ccgcctaaaa acattaaacc cgcaataacg cgcttccgag ataatcgttc gcgtccttca
     6961 ctcccggcag cgaaaaaaaa taaccgccgc cgataggttt aacgtattcc tccagcgctt
     7021 cgccattgag ccttttttgt actgtcagga agcctttttc cagatcgtgt tggtagcaga
     7081 caaacagcaa ccccatatcc agttgtccgg agttggtgac ccccaacgaa taactgtagc
     7141 cgcgacgcag catcaggctg gactcactct ccgccgtgcg gggattcgcc agccggatat
     7201 ggctgtccag cgcgatcacc ttcccttccg ggtcgctggc gtaatcaggc acatcatgct
     7261 catgctgcat tcccagcggc gcaccggttt gcttatcacg gccaaaaatc gtctgctgtt
     7321 ctttcagcgg cgttctgtcc caaaattcca ctcgaaactg aatcaagcgt actgcctgat
     7381 agctgccacc gattgtccac gcaggctcct gctgatctgc cgttacccac accacttttt
     7441 gcatcaactt atcattctgg ctatcgggat tggcagtgcc gtctttaaag cccagcaaat
     7501 taatcggcgt ctctttgcct ttactacgcg ctgcgtgatc ggaaataaac ccttcccgct
     7561 tccagcgcac gctgagcaaa tccggcgtgt gtttgatgat atcgcgcagc gcatggatca
     7621 ccgtgtcctg ggtgttggcg caaatttgta gcaacacatc accatggcat aacgccgcat
     7681 ccagcgagtc gttggggaaa cgcgtcatct tctgcaactt tttcggcatc tgtggcgcaa
     7741 ggccaaaccg ctcatcaaac aatgagtgac ccaccgataa cgtgatggtg agattatcgg
     7801 gcgcaatgta gccgccaaga atgccggaat cgagtggtgg caggcgcgga tttggcgttt
     7861 ctggtgccgc tccgccctga gtcagaaaag caaaacgctg agtcaacaag cgaaacaacc
     7921 gttcaagatc ggctttatcg ctggcaagca catcaaacgc caccagcatc attgcggcct
     7981 gttgtggcgt caggatccct gcctgatgct caccataaaa cggctgtttc tcattgcgtg
     8041 catccggtga aagcgtaccc ggcgcacttt gcgttttttg tgcatgagcg accggacaac
     8101 ttcccgccag cgccagcgca cctatcactt tcagtaaacg tcggcgtgac ggttcattca
     8161 cgccgttttc atctttatac tgcataacgc ttaatccagt cccagcacac cgcgaagttg
     8221 cgccagatct tccgcctgcg cagtaatcgg tcctttcagt gcattccggt cggcatcggt
     8281 caatttgtcg taggtttcaa aaccgtcttt agtacggtat ttcgccagaa tggtatcgac
     8341 ctttttaaag ttggcatcga cttttgccag cagttccggg ttggcttttt gcagttgtgg
     8401 acgcagcaaa tcgacaattt tctgcgagcc ttcaacgtta gcctggaaat cccacagatc
     8461 ggtgtggctg tagcgatctt cttcaccgct aattttgctg gctgccactt cctcaatcag
     8521 tccggctgcg ccgccgacca cttttgaagg tgggaaagcc agttcactga tgcgtttttg
     8581 caaatcgacc acatctgtat aaagctgctc agcgtactga tccatccctt tggtggtgtt
     8641 gtcgccaaac aatgcttttt ccagacggtg gaaaccagtg aattttgggt cggcggcttt
     8701 ttgctcgtaa tcatcttcac gggcgtcaat gctgccatcc agatcggaga acagttcagc
     8761 aatcggttca atgcgctcat agtgctggcg cgtcggcgca tacagtgctt tcgctttttc
     8821 gatatcgcca gctttaatcg cgtcggtaaa ggctttggtg tcggtcacca gctgcgtggt
     8881 ttccgccatg acatacgctt tatatgcagt aattgcacca ccaagactta acagcgcatc
     8941 actttgcgcc gcatccgccg ttgcctcacc tttgacgatc aacttccctt tcgggttagt
     9001 cagcagaccg caggtcatat cgtattcgcc aggctgtaaa ttcgccgtca ttttctggct
     9061 aaaaccaggg gcgatatttt cccgctcttc caccaccatc acgcctttga ggatctccca
     9121 ctccagcgcc ttctggctat ggttctgaat aatgaactgt gttttcccgg cgttaaccgt
     9181 aatggtcatc ggttcgcact gcttatccgt cacggtcact ttgacctgcg gcacatcagc
     9241 ggcgttagcc ataaaagcag aagaaaacag cgcagccacg ctcaactgca atgcgttacg
     9301 gcagaagtta atggtcatga cgagactatc cctttaaagt atgttgtaac taagcaagag
     9361 tttgcgtcgt atttgttacg cggagcgaga cgctgtcgcc cctgcgcgtg gtggcagagc
     9421 aaatgccacc agcgccggga tgagataaat aaaccagacg gcgacttcgc tgacgctcgg
     9481 cgcttcctga tagccaaaaa tcccttccat cagcgtgcca aacagcgagt gagttgagag
     9541 caccgcactc atatcgaagg cgatttcctg aaagtggttc cacaatccgg cttcatgaaa
     9601 tgcgcgaatg gcaccagctg ccagccctgc ggcgacgaag agaataaaca ggctggtcca
     9661 tttaaaaaat gcaccaagat tgaggcgaat accgccccag tagagcagaa agccgagcac
     9721 cacggctgta gcaagaccga gcattgcacc cagcggcggc cagatcccga catcttgttg
     9781 aaatgccgcc agcaggaaaa agaccgactc cagcccttcc cttgcaacgg caaaaaagac
     9841 catcatcacc agcgcccagc catgatgatt tccacgctac aatgcgctat cgactgcctg
     9901 ttccagttgc acttacgttg cgcgacactt tgcgcatcca gaaaaccatc caggtaagga
     9961 tcaccacggc gatcaccgcc acgatacctt caaacagttc ctgttctttt tgcggaaatt
    10021 cgccggtggt ttcgttaatg aagatcccca ggcccaggca caacgcagcg gcaagcaaca
    10081 cgccaatcca catcacacca atccatcggc ctcgctgggt acgcttaaga tagctggcaa
    10141 tcaaactgac aatcagcgcg gcttcaagtc cttcgcgcaa cataatgaga aacggaacaa
    10201 acatgccacc cacccttaaa cgtttttctg agtcaatcta tgcaaagaaa agtaaatcgc
    10261 agtgatagcg attatcatta cggtaaagaa aaatacaagc ggaatgttta taaaatgatg
    10321 ttggaatgta aacaaagaga ggtaatgcca ggggatataa acgattattc cagggtagaa
    10381 agatgggatt gtttgcaaag aaccatgtgt tcttgccgga tgccgcgtaa acgccatatc
    10441 cagccgacaa aactgtccag actcaatgca tcagagcttc catgtaaaac tgataagcgg
    10501 gtgtatcaag caatttcgtc catccgcgat tatcaaatct aactttttgc ccggaacata
    10561 ataacagctc gggtgttggt ggcgtcaaaa tcgctgaagc gttccccgaa ggccgggaca
    10621 gcccacatgg atgtgggctg agggcgcgtc ttacagagac gttacctcgc gcccgacccg
    10681 gtagccgaag gggataagct gaaggtaccg cgcagcggcg attttgttcg ccagagcccg
    10741 ggggtgcaca gggggcggcg gcgattggcc gccccctgcg cgctccctgc accattcaat
    10801 ttatatggcg aggcacatta agggagcgca acccgctgct gaagccaaac aaaaccgccg
    10861 caggctaagt cccttagctt tcctgcaacc gtgacggcgg agccgaatga tagtgcgcat
    10921 cggcctcggc aaagcgtttt tgcatcgccg ctgacggcgc tttacccagc aaactaaaca
    10981 ctacaatccc gatactgccg aagatgaagc ccggaataat ttcgtacagt cccagccagc
    11041 cgaactgctt ccagacgata accgtcagcg caccgatgat catccccgcc agtgcaccgt
    11101 tacgcgtcat gcgtgaccac atcaccgaga acagcaccac cggaccaaac gccgcgccaa
    11161 agcctgccca cgcgtagctc actaagccca gcacgcggtt ttccgggttt gccgccagcg
    11221 caatcgccac cagcgccacc accagcacca tcacacgccc tacccacacc agctctttct
    11281 ggctggcatg tttacgcaga aacgctttgt ataaatcttc ggtaatcgca ctggagcaca
    11341 ccagcagttg gcaacttaag gttgacatta ccgccgccag aattgccgac agcagaatcc
    11401 cggcaatcca cgggttaaac agaatttgcg ccagttcgat aaacacgcgc tcggcgttct
    11461 ggtttaccgc gcctgctacc gccgggtgct cattaaagta agcaatccca aagaagccga
    11521 cagccaccgc ccctgccagg cagaggatca tccaggtcat actgatacga cgcgcatgga
    11581 caatgctgtg gtgagaatcc gccgccataa aacgcgccag aatgtgcggc tgcccgaagt
    11641 aacccagccc ccaacccatc agtgagataa tggcaacaaa gttcagacct ttgagcatat
    11701 caacgttttc gatgctcttt tgtttgatca cttccagcga gtcaccaaag ccaccgacac
    11761 tgataatgac gataaccggt gtcaggatca gggcaaaaat catcaggctg gcctgtacag
    11821 tgtcagtcca gctcaccgcg aggaaaccgc caataaaggt gtaaaggatc gtcgccgcag
    11881 ctcccgccca cagagccgtt tcgtagctca tgccaaaggt actttcaaac agacgcgcgc
    11941 ctgccacaat gcccgaagcg caataaatgg tgaagaacag caaaataacc agcgcggaga
    12001 taatgcgcaa aatgcggctt ttatcttcaa aacgcccggt gaaataatcc ggcaatgtta
    12061 aggcgttatt attgtattcg gtatgcacac gcaaccgccc ggccaccagc ttccagttga
    12121 tccacgcgcc taatgtcagg ccaatggcga tccagctttc ggaaatcccg gaaagaaaaa
    12181 ccgcgccagg caaccccatt aacagccagc cgctcatatc cgacgcaccc gccgataatg
    12241 ccgtcacaaa tggcccaaga ctacgaccgc ccagaatata gtcgtcaaag tttttcgttg
    12301 atcgccaggc gataaaccca atcaatatca tgccaaagat atagacacaa aatgtcacca
    12361 acatcggtgt gctaatagcc atctaaagtc tccaaaaaat tattatcggc aatgtcgaaa
    12421 cttgccgtta tatctgcaac cggaacgggg taacagagtt tattttttac cagggcgacc
    12481 gtatcctgcc ggaagcgctg gttattcaca atcgatttaa cacaccattt acattaaatt
    12541 ttagtgctca gcgacactat ttttcatcag gttgcactct ctcacatttt ttgcggttgc
    12601 acctttcaaa aatgttaact gccgcagaga aaaagtctga gttatttttt taatccctgt
    12661 catatcaatt tcttttatta acatttcatt catttttaag cttgctacgc aggtcacatt
    12721 taacatggtt gcacaaagtt gcaacatcat ggatatttca cgataacgtt aagttgcacc
    12781 tttcagaaca acaggagtaa tggcatggga accaccacca tgggggttaa gctggacgac
    12841 gcgacgcgtg agcgtattaa gtctgccgcg acacgtatcg atcgcacgcc acactggtta
    12901 attaagcagg cgattttttc ttatctcgaa caactggaaa acagcgatac tctgccagag
    12961 ctacctgcgc tgctttctgg tgctgccaat gagagcgatg aagcaccgac tccggcagag
    13021 gaaccacacc agccattcct cgactttgcc gagcaaattt tgccccagtc ggtttcccgc
    13081 gccgcgatca ccgcggccta tcgtcgcccg gaaaccgaag cggtttctat gctgctggaa
    13141 caagcccgcc tgccgcagcc agttgctgaa caggcgcata aactggcata tcaactggcc
    13201 gataaactgc gtaatcaaaa aaatgccagt ggtcgcgcag gtatggtcca agggttattg
    13261 caggagtttt cgctgtcatc gcaggaaggc gtggcgctga tgtgtctggc ggaagcgttg
    13321 ttgcgtattc ccgacaaagc cacccgcgac gcgttaattc gcgacaaaat cagcaactgt
    13381 aactggcagt cacacattgg tcgtagcccg tcactgtttg ttaatgccgc tacctggggg
    13441 ctgttgttta ctggcaaact ggtttccacc cataacgaag ccagcctctc ccgctcgctg
    13501 aaccgcatta tcggtaaaag cggtgaaccg ctgatccgca aaggtgtgga tatggcgatg
    13561 cgcctgatgg gcgagcagtt cgtcacgggt gaaaccatcg cggaagcgtt agccaatgcc
    13621 cgcaagctgg aagagaaagg tttccgttac tcttacgata tgctgggcga agctgcactg
    13681 actgccgcag acgcacaggc gtatatggtt tcctatcagc aggcgattca cgccattggt
    13741 aaagcgtcta acggtcgtgg catctatgaa ggtccgggca tttcaatcaa gctgtcggcg
    13801 ctgcatccgc gctacagccg cgcccagtat gaccgggtaa tggaagagct ttacccgcgt
    13861 ctgaaatcac tcaccctgct ggcgcgtcag tatgatattg gtattaacat cgatgccgaa
    13921 gaggccgatc gtctggagat ctccctcgat ctgctggaaa atctctgttt cgagccggaa
    13981 ctggcaggct ggaacggcat cggttttgtt attcaggctt atcaaaaacg ctgcccgttg
    14041 gtgatcgatt acctggttga tctcgccacc cgcagccgtc gccgtctgat gattcgcctg
    14101 gtgaaaggcg cgtactggga tagtgaaatc aagcgtgcgc agatggacgg ccttgaaggc
    14161 tatccggttt atacccgcaa ggtgtatacc gacgtttctt atctcgcctg tgcgaaaaag
    14221 ctgctggcgg tgccgaatct aatctacccg cagttcgcga cgcacaacgc ccatacgctg
    14281 gcagcgattt atcaactggc aggtcagaac tactatccgg gtcagtacga gttccagtgc
    14341 ctgcatggta tgggcgagcc actgtacgag caggtcacag ggaaagttgc cgacggtaaa
    14401 cttaaccgac cgtgtcgtat ttatgccccg gttggcacat atgaaacgct gctggcgtat
    14461 ctggtgcgtc gcctgctgga aaacggtgct aacacctcgt ttgttaaccg tattgccgac
    14521 acctctttgc cactggatga actggtcgcc gatccggtca ctgctgtaga aaaactggcg
    14581 caacaggaag ggcaaactgg attaccgcat ccgaaaattc ccctgccgcg cgatctttac
    14641 ggtcacgggc gcgacaactc ggcagggctg gatctcgcta acgaacaccg tctggcctcg
    14701 ctctcctctg ccctgctcaa tagtgcactg caaaaatggc aggccttgcc aatgctggaa
    14761 caaccggtag cggcaggtga gatgtcgccc gttattaacc ctgcggaacc gaaagatatt
    14821 gtgggctttg tgcgtgaagc cacgccgcgt gaagtagaac aggcgctgga aagtgcggtt
    14881 aataacgcgc caatctggtt tgccacgcct ccggctgaac gcgcggcgat tttgcatcgc
    14941 gctgccgtgc taatggaaag ccagatgcag caactgattg gtattctggt gcgtgaagcc
    15001 ggaaaaacct tcagtaacgc tattgccgaa gtgcgcgaag cggtcgattt tctccactac
    15061 tacgccggac aggtgcggga tgatttcgct aacgaaaccc accgtccatt agggcctgtg
    15121 gtgtgtatca gtccgtggaa cttcccgctg gctattttca ccgggcagat cgctgccgca
    15181 ctggcggcag gtaacagcgt gctggcaaaa ccggcagaac aaacgccgct gattgccgcg
    15241 caagggatcg ccattttgct ggaagcgggt gtaccccctg gcgtggtgca attgctgcca
    15301 ggtcaggggg aaaccgtggg cgcgcaactg acgggtgatg atcgcgtgcg cggggtgatg
    15361 tttaccggtt caaccgaagt cgctacgtta ctgcagtgca atatcgccag ccgcctggac
    15421 gctcagggtc gccctattcc gctcatcgct gaaaccggcg gcatgaacgc gatgattgtc
    15481 gattcttcag cactgaccga acaagtcgtc gtggatgtgc tggcctcggc gttcgacagt
    15541 gcgggtcagc gttgttcggc actgcgcgtg ctgtgcctgc aagatgagat tgccgaccac
    15601 acgttgaaaa tgctgcgcgg tgcaatggcc gaatgccgga tgggtaatcc gggtcgcctg
    15661 accaccgata tcggtccggt gattgatagc gaagcgaaag ccaatattga gcgccatatt
    15721 cagaccatgc gtagcaaagg ccgtccggtg ttccaggcgg tgcgggaaaa cagcgaagat
    15781 gcccgtgaat ggcaaagcgg cacctttgtc gccccgacgc tgatcgaact ggatgacttt
    15841 gccgaattgc acaaagaggt ctttggtccg gtgctgcatg tggtgcgtta caaccgtaac
    15901 cagctaccag agctgatcga gcagattaac gcttccggct atggtctgac gcttggtgtc
    15961 catacgcgta ttgatgaaac catcgcccag gtcactggct cggcccatgt tggtaacctg
    16021 tatgttaacc gtaatatggt gggcgcagtg gttggtgtgc agccgttcgg cggcgaaggg
    16081 ttgtccggta ccgggccgaa agcaggcggt ccgctctatc tctaccgtct gctggcgaat
    16141 cgcccggaaa gtgcgctggc agtgacgctc gcgcgtcagg atgcagagta tccggtcgat
    16201 gcacagttga aagccgcatt gactcagccg ctaaatgcac tgcgggaatg ggcagcaaat
    16261 cgtccagaat tgcaggcgtt atgtacgcaa tatggcgagc tggcgcaggc aggaatacaa
    16321 cgattgctgc cggggccgac gggtgaacgc aacacctgga cgctgctgcc gcgtgagcgc
    16381 gtgttgtgta ttgccgatga tgagcaggat gcgctgactc agctcgccgc cgtgctggcg
    16441 gtgggcagcc aggtactgtg gccggatgac gcgctgcatc gtcagctagt aaaggcattg
    16501 ccatcggcag tcagcgaacg tattcaactg gcgaaagcgg aaaatataac cgctcaaccc
    16561 tttgatgcgg tgatcttcca cggtgattcg gatcagcttc gcgcattgtg tgaagccgtt
    16621 gctgcgcggg atggagcaat tgtttcggtg cagggttttg cccgtggcga aagcaatatc
    16681 cttctggaac ggctgtatat cgaacgttcg ctgagtgtga ataccgctgc cgctggcggt
    16741 aacgccagtt taatgacgat cggttaaaca ggtagccgga ggatgttaca ccctcctccg
    16801 gcatctttaa cgtggtcgaa tcccctcaat aataatccgc tgcacgtttt caaccgtttg
    16861 attgaaaaat acctcatcgc gcaacgttgc gcctgtcacc gcctccacct gaggggcgaa
    16921 atcggcgtaa tgttgagtgg aagcccaaat aataaaaatc aaatgctgcg gatcaatcgg
    16981 cgcgagtttg ccgcttttga cccaaccggc aatcagcgcc gatttctcat caattaatgc
    17041 cttcaaatcg cccgtcagtt catccattaa cagcggcgcg cctgccagca tctccataca
    17101 gaacaggcgc gaagcctgcg gataatcgcg tgagacttcc agcttcagac ggatgtactc
    17161 tttgatcgcc gccagcgggg cgaaatcttc acgaaacgct tttaacggtg ccagccagat
    17221 atcgagaatc tgccgcagca cggcaatata cagcgcctct tttgacggaa agtaatacag
    17281 cagattggtt tttgaaacac ccgccaactc tgcgatctgc tccagccttg tgccgtgaaa
    17341 accgaattgt gaaaaagtgt ccagtgctgc gctaagaatc gcttttttct tcgcgcttac
    17401 tgcgcgcgaa cgtttacccg ttgttttcac tgcgccttgc gtcatgcgct ctcccctctt
    17461 gtagattggc aacaggatag caaaaccccc gcccggcctc gaccttctgc actctcatcg
    17521 cgcacggatg catgttttat gtgcaactgt tttgaccgtt tagtccactt tttaccagat
    17581 attttagata acacaatgct aacacattaa taacattcac tttttaaaaa ctggcatccg
    17641 ctttgcaaac aagccaatac gcggctgaaa aggatatgca ggatgcagcg ccccgtctga
    17701 ctttcacttt acgagacgaa gagaggttga tgatgaaaat tggcgtattc gtacctattg
    17761 gcaacaacgg ctggctcatt tcgacccacg cgccgcagta catgccgacc tttgaactga
    17821 ataaagccat tgtgcaaaaa gcggagcatt accatttcga tttcgccct
//
LOCUS       DADMJB010000079        17798 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.079, whole genome shotgun sequence.
ACCESSION   DADMJB010000079 DADMJB010000000
VERSION     DADMJB010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17798)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17798)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17798
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.079"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..386
                     /locus_tag="JN078_002349"
     CDS             <1..386
                     /locus_tag="JN078_002349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9041527.1"
                     /translation="LAEVRQHTWSSGTNGVVAATFSLRLKGKPVSFVVPLAFVKNLDK
                     TLTVNTGALLTMSVSANGGMPPYKYAWKKDGQPVDGQTTDTFSKPGAQSADAGKYTCV
                     VTDSAEKAQSVTSVECTVTVSAAAG"
     gene            401..775
                     /locus_tag="JN078_002350"
     CDS             401..775
                     /locus_tag="JN078_002350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9041528.1"
                     /translation="MKKDLKTLALARLSGFRHKTVKVPEWGNVSVVLREPSAEAWYLW
                     QEVLNGDGEDDDTLSVVAKTRRNLEADVTLFCDVLCDTDLQRVFTPDDREQVLAVYGP
                     VHARLLRQALELIADAESARKK"
     gene            871..1080
                     /locus_tag="JN078_002351"
     CDS             871..1080
                     /locus_tag="JN078_002351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HAY9041529.1"
                     /translation="MWMEFDRISPLGDERGDIRNAQIVKAVFGAQGMNVALKDVMLCW
                     GEDEDKPEVDPFAALEDALSFAAQS"
     gene            1128..1388
                     /locus_tag="JN078_002352"
     CDS             1128..1388
                     /locus_tag="JN078_002352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000224021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041530.1"
                     /translation="MATLRELIIKIVSFRGTHIDAFFRRASSAAHTNARGLITVDLFC
                     CTEAIARQVPEAGSEVLSSVIASGREVLTRGLIAGDDVLTRE"
     gene            complement(1523..3124)
                     /locus_tag="JN078_002353"
     CDS             complement(1523..3124)
                     /locus_tag="JN078_002353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001546148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66-like element ISEc49 family transposase"
                     /protein_id="HAY9041531.1"
                     /translation="MNIRIWSGILPCMDISALNTTNDIEKLRAMALAMVQEVMSENAE
                     KERELLEKSRRIQLLEEMLKLVRQQRFGKKCETLAGMQRSLFEEDVDADIAALTAHLD
                     KLLPQSPEEDEKASRSRPIRKPLPVHLPRVEKMIQPDTDHCPECDEPLHYIRDAVSEK
                     LEYIPAHFVVNRYVRPQYSCPCCQKVFSGEMPAHILPKSAVEPSVIAQVIINKYGDHL
                     PLYRQQQVFARSDVGLPVSSMADMVGAAGAALSPLAALLHRELINRPVVHADETTLKI
                     LNTKKGGKSCSGYLWAYVSGERTGPSVVCFDCRTGRSHEYPENWLQGWGGTLVVDGHK
                     AYRTLANKVPEITLAGCWAHARRGFADLYKISKDPRAAIAVKKIAGLYRLEKKISSRP
                     VEKIRQWRQRYARPILEELWSWLEEQEPQCSPGKALHKAIAYALSHRVELSRFLEDGA
                     VPLDNNVCERAIKNVVLGRKSWLFAGSQMAGERAAQIMSLLETAKRNGLEPHAWLTDV
                     LMRLPEWPEERLAELLPLEGFTFSG"
     gene            complement(3131..3523)
                     /gene="tnpB"
                     /locus_tag="JN078_002354"
     CDS             complement(3131..3523)
                     /gene="tnpB"
                     /locus_tag="JN078_002354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000950651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HAY9041532.1"
                     /translation="MLSPDNVFIAIKPVDMRRGIDSLTQYIQDELRSTWHEGAAFVFV
                     NKVRSRIKVLRWDKHGVWLCTRRLHKGSFRWPRANDAAWHLTPDEFNWLIAGVDWQQV
                     KGHDLTKWVWQNEPELRPENTKNTLLTQ"
     gene            complement(3510..3839)
                     /locus_tag="JN078_002355"
     CDS             complement(3510..3839)
                     /locus_tag="JN078_002355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001325657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence hypothetical
                     protein"
                     /protein_id="HAY9041533.1"
                     /translation="MSKPRWTIEQKRQHVAAWRASGLTRQQYCELNDIPFTSLREWPQ
                     DVAKAERRANEPTVLPVHIAPPLHADVPQPVTNEPVTLFLPGGVRMCCQPSQLTDVFR
                     ALKYAQS"
     gene            3884..7144
                     /locus_tag="JN078_002356"
                     /pseudo
     CDS             3884..7144
                     /locus_tag="JN078_002356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_304285.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
     gene            7137..7478
                     /locus_tag="JN078_002357"
     CDS             7137..7478
                     /locus_tag="JN078_002357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9041534.1"
                     /translation="MAEIKTLHLVPREGMQVSEKPSVARVRFGDGYEQRRPTGLNARL
                     KTFQAVFRVTDEATRRWLEEFLSWHGGYRAFLWRPPKHNRTVRVVCREWSVTDNARYS
                     DFSCTIEQVVN"
     gene            7478..8176
                     /locus_tag="JN078_002358"
     CDS             7478..8176
                     /locus_tag="JN078_002358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HAY9041535.1"
                     /translation="MQDIHEESLSESVKSEQSPRVVLWEIDLTVQGGERYFFCNELNE
                     KGEPVTWQGRKYEAYPIDGSGFEMNGRGSSARPSLTVSNLFGLVTGMAEDLQSLVGAT
                     VVRRRVYARFLDAVNFVAGNPEADPEQELSDRWVVEQMSQLTAMTASFVLATPTETDG
                     ALFPGRIMLANTCMWTYRSDECGYTGGAVADEFDKPTTDIRKDRCSKCMRGCELRRNV
                     GNFGGFLSINKLSQ"
     gene            8187..8930
                     /locus_tag="JN078_002359"
     CDS             8187..8930
                     /locus_tag="JN078_002359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9041536.1"
                     /translation="MTQTESAILAHARRCAPAESCGFVISTPEGERYIPCVNISAEPE
                     AYFRIAPEDWLRAEMQGEIVALVHSHPGELPWLSEADRRLQIKSALPWWLVCRGEIHK
                     FRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIDMPDFHREDDWWRNGQNLYLDNMAVT
                     GFYRVPLSSAPPGDILLCCFGASVPNHATIYCGNGELLHHLPEQLSKRERYSEKWQRR
                     THSVWRHRHWHASAFTGICNDLAAASACM"
     gene            8828..9508
                     /locus_tag="JN078_002360"
     CDS             8828..9508
                     /locus_tag="JN078_002360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000246273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HAY9041537.1"
                     /translation="MATTNAFCLASPPLARICLHGDLQRFGRRLSLYVNTAAEAIRAL
                     SMQMPGFRRQMNEGWYQIRIAGDDTAPEAVYARLHEQLGEGTVIHIVPRLAGAGKGGL
                     QIVLGAAAIVGSFFTAGASMALWGSALAAGGFSATTMLFSLGASMILGGVAQMLAPKA
                     KTPDYRATDNGRQNTYFSSLDNMIAQGNPMPVPYGEMLVGSRRISQDISTRDEGGGGK
                     VVVIGRQG"
     gene            9749..13222
                     /locus_tag="JN078_002361"
     CDS             9749..13222
                     /locus_tag="JN078_002361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HAY9041538.1"
                     /translation="MGKGGGRAHTPREAKDNLKSTQMMSVIDAIGEGPIEGPVKGLQS
                     ILVNKTPLTDTDGNPVIHGVTAVWRAGEQEQTPPESFESSGSETVLGVEVTRAKPVTR
                     TITSANIDRLRVTFGVQSLVETTSKGDRNPSSVRLLIQLQRNGNWVTEKDVTINGKTT
                     SQFLASVILDNLPPRPFNIRMVRETADSTTDQLQNRTLWSSYTEIIDVKQCYPNTAIV
                     GMQVDAEQFGGQQMTVNYHIRGRIIQVPSNYDPEKRTYSGIWDGSLKPAYSNNPAWCL
                     WDMLTHPRYGMGKCLGAADVDKWALYAIGQYCDQTVPDGFGGTEPRMTFNAYLAQQRK
                     AWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDVVWPYTNSDVVVDDNGVGFRYSFSAL
                     KDRHTAVEVNYTDPQNGWQTSTELVEDPEAILRYGRNLLKMDAFGCTCRGQAHRAGLW
                     VIKTGLLETQTVDFTLGSQGLRHTPGDIIEICDNDYAGTMTGGRVLSIDAATRTLTLD
                     REVTLPETGTSAVNLINGSGKPVSVDITAHPAPDRIQVSTLPDGVETYGVWGLSLPSL
                     RRRLFRCVSVRENTDGTFAITAVQHVPEKEAIVDNGARFEPQSGSLNSVIPPAVQHLT
                     VEVSAADGQYLAQAKWDTPRVVKGVRFSLRLTSGSGEDSRLVTTAITADTEHRFSGLP
                     LGEYTLTVRAINSYGQQGEPATTTFRINAPAKPATIELTPGYFQITAVPRLAVYDPTV
                     QFEFWFSEAKIADTSQVETSARYLGTGSQWSVSGPHIKPGKDFWFYVRSVNLVGKSAF
                     VEASGRASNDAEGYLGLFREKIGKLHLAQGLWELIDNSQLADEMAEMKTTITETRNEI
                     TQTVSKTLEDQSATIQQIQRVQKDTNDDLAALYMLKVQKTKNGIPYVAGIGAGIEDTD
                     GQPLSNILLLADRIAMINPEDGNTTPLFVAQGNQLFMNDVFLKRLFAVSITSSGNPPT
                     FSLTPEGRLTARNADISGNVNANSGTLNNVTINENCRVLGKLSANQIEGDLVKTVGKA
                     FPRDSRAPERWPSGTVTVRIYDDQPFDRQIVIPAVAFSGAKHEREHTDIYSSCRLIVR
                     KNGAEIYNRTALDNTLIYSCVIDMPAGHGHMTLEFSVSAWLVNNWYPTASISDLLVVV
                     MKKATAGISIS"
     gene            13290..13889
                     /locus_tag="JN078_002362"
     CDS             13290..13889
                     /locus_tag="JN078_002362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ail/Lom family outer membrane beta-barrel
                     protein"
                     /protein_id="HAY9041539.1"
                     /translation="MRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLHARTNAPG
                     SDNLNGINVKYRYEFTDALGLITSFSYANAEDEKKTHYSDTRWHEDSVRNRWFSVMAG
                     PSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAW
                     GAGVQFNPTESVAIDIAYEGSGSGDWRTDGFIVGVGYKF"
     gene            13954..14950
                     /locus_tag="JN078_002363"
                     /pseudo
     CDS             13954..14950
                     /locus_tag="JN078_002363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000216474.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase S74"
     gene            14963..15361
                     /locus_tag="JN078_002364"
     CDS             14963..15361
                     /locus_tag="JN078_002364"
                     /inference="COORDINATES: protein motif:HMM:NF025253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber domain-containing protein"
                     /protein_id="HAY9041540.1"
                     /translation="MLTTANTWTQAQTFNGGINGNLTVTGNGSFNDIQIRSDKRNKRN
                     LVKLDNALDRLEALTGYLYEIQYSADGWQTSVGLIAQDAQKALPELVTEDADVISGEK
                     RLRLNYNGIIALLVEGFKTLRHEIKELREK"
     gene            15447..15959
                     /locus_tag="JN078_002365"
     CDS             15447..15959
                     /locus_tag="JN078_002365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041541.1"
                     /translation="MGVTSGWVGSSAKSETGEQWMGAAGTKLGLSKPFMMSQMVGRTM
                     GCKIATEYYKWKSSDKVDNWGAVGADWPLEEKSKGTITNAASCGSGRLVGAVVTLSHF
                     LTNSTPTAAVYLAGGKAGNITVNVGGATQTMIYQGVVSGFQYYWSGSVSSAFVEAMKK
                     TGVPQDLKIS"
     gene            16035..16247
                     /locus_tag="JN078_002366"
     CDS             16035..16247
                     /locus_tag="JN078_002366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001114260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HAY9041542.1"
                     /translation="MPEKFFRTDADNNDVPMTAASWMALSEATEQAMFAKGVEINTRQ
                     LQMKAEVEALTDLKAIRSYVVGWPAG"
     gene            complement(16389..16713)
                     /locus_tag="JN078_002367"
                     /pseudo
     CDS             complement(16389..16713)
                     /locus_tag="JN078_002367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414822.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
     gene            complement(16849..17097)
                     /locus_tag="JN078_002368"
     CDS             complement(16849..17097)
                     /locus_tag="JN078_002368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinI family protein"
                     /protein_id="HAY9041543.1"
                     /translation="MRIEICIAKEKMTKMPTGAVDALKEELTRRISKRYDDVEVIVKA
                     TSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH"
     gene            complement(17452..>17798)
                     /locus_tag="JN078_002369"
     CDS             complement(17452..>17798)
                     /locus_tag="JN078_002369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416381.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HAY9041544.1"
                     /translation="PAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRR
                     RGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIA
                     RVRSVEEILHAL"
BASE COUNT         4193 a         4291 c         5440 g         3874 t
ORIGIN      
        1 tcctggcgga agtgcgtcag cacacctggt catccggtac caacggtgtg gtggctgcaa
       61 cgttctcact gcgtctgaaa ggcaaaccgg tgtcctttgt ggtaccgctg gcgtttgtga
      121 aaaatctgga taagacactt accgtgaata ccggtgcgct gctgacaatg tcagtcagtg
      181 ccaacggggg aatgccgccg tataaatacg cctggaagaa ggatggtcag ccggttgacg
      241 ggcagacgac agacaccttc agtaagccag gtgcgcagtc cgctgatgcg gggaaatata
      301 cctgcgtggt gaccgattcg gcagagaaag cacagagtgt gacgtctgtt gaatgcaccg
      361 tgacagtgag cgcagctgcc ggataagggg atgggtcatc atgaaaaagg atctgaaaac
      421 gctggcgctg gccagactgt cagggtttcg tcataaaacg gtgaaggtgc cggaatgggg
      481 gaatgtcagc gtggtgctgc gggagccttc ggcagaggcc tggtatctgt ggcaggaagt
      541 gctcaatggt gatggagagg atgacgatac cctgtcggtg gtggcgaaaa cccgccgtaa
      601 cttggaagcg gatgtgacgc tgttctgcga tgtcctgtgt gatacggacc tgcagcgggt
      661 gttcactccg gacgaccgtg agcaggtgct ggccgtctat ggtccggtac atgcccggtt
      721 gctgcgtcag gcactggaac tgatcgctga tgcagagtcg gccagaaaaa agtagcccgc
      781 ccggaaattc gctttctgat gcgacttgcg ctccgtctgg ggcgcacctt atccgaactg
      841 cgccacagcc tgagtgcgag cgaggcgatg atgtggatgg agttcgacag gatatccccg
      901 ctgggtgatg agcgcgggga tatccgtaat gcacagatcg tgaaagcggt tttcggggca
      961 caggggatga atgttgcact gaaggacgtc atgctctgct ggggcgagga tgaggataag
     1021 ccggaggtgg atccgtttgc ggcgctggaa gacgcgctga gctttgcagc acagtcatga
     1081 atgatgagaa ccgctgaggc ggttttttta cgcccggaga aaggtgaatg gcgacgttac
     1141 gtgaactgat tatcaaaatt gtaagcttcc ggggaactca tattgacgcg tttttcaggc
     1201 gcgcgtcatc ggcggcgcat acgaacgctc gtggtttgat aacggttgat ttattttgtt
     1261 gcacagaggc gatcgccagg caggtaccgg aggcgggctc tgaagtactg agtagcgtga
     1321 tcgcgtcagg ccgcgaagta ctgactcggg gattaattgc aggtgatgat gtactgaccc
     1381 gggaatgact ccgggctgat tcaggttctt attcgctgtc agcccgcgtg gttgctggtc
     1441 tggctcattt cctgccgtca ggagttcaac tcccgactgc aggttatggc ccggtgcacg
     1501 aacacctgac ggcaggtatc actcacccgg agaaggtaaa tccctcaaga ggcagcaact
     1561 ctgccagtcg ctcctccggc cactccggca gacgcatcag gacgtctgtc aaccaggcat
     1621 gcggctccag accgttgcgt ttcgcggttt ccagcaagct cattatttgc gcggcgcgtt
     1681 ctcccgccat ctgcgaaccg gcgaacagcc acgattttct gcccagaacc acgtttttga
     1741 tggcccgttc acacacatta ttatccagcg gcaccgcacc atcttccagg aagcggctca
     1801 gttccacgcg atgagacagc gcataggcaa tagctttgtg taatgccttt cccggagaac
     1861 attgcggttc ctgctcttca agccatgacc acagttcttc cagtatcgga cgggcataac
     1921 gctgtcgcca ctggcggatt ttttccacgg ggcggctact gatcttcttc tcaagacggt
     1981 acaaccccgc gattttcttc acggctatgg cagcccgtgg atctttactg attttataca
     2041 ggtcggcgaa gcccctgcgg gcatgggccc agcatccggc cagcgtgatc tccggcactt
     2101 tgtttgccag agtccggtaa gctttatgtc cgtcgacaac cagcgtcccg ccccagccct
     2161 gaagccagtt ttcaggatac tcatggctac gtccggtccg gcagtcgaag cacacaactg
     2221 acggtcccgt cctttctcca ctgacgtatg cccacagata accggagcag gatttaccgc
     2281 ctttcttcgt gttcaggatc ttcagggtag tctcatctgc atgcaccacc ggacggttta
     2341 tcaactcgcg atggagtaac gccgccaggg gagataatgc ggcacccgcc gcgccaacca
     2401 tgtcagccat cgaactgacg ggcagcccga catctgaacg ggcaaagacc tgttgctggc
     2461 gatacagagg caggtggtca ccgtatttat tgatgatcac ctgtgcgatg actgatggct
     2521 caacggcact tttcgggagg atatgtgccg gcatttcacc gctgaacacc ttctggcaac
     2581 agggacaact gtattgcgga cggacataac ggttcaccac aaagtgagcg ggaatatact
     2641 ccagcttttc actcaccgca tcgcggatat agtgcagcgg ctcgtcacat tcagggcaat
     2701 ggtcagtgtc cggctggatc attttttcca cccgtggaag atgaaccggt aagggtttgc
     2761 gtatcgggcg tgaacgggac gctttttcat cttcttcagg ggattgcggg agcagtttat
     2821 ccagatgtgc ggtaagcgcg gcgatatcgg catcaacatc ctcttcgaat agggagcgtt
     2881 gcataccagc cagcgtttca catttttttc cgaagcgctg ttgacgaacc agtttcagca
     2941 tttcttccag aagctggatg cgccggcttt tctccagtaa ttcccgctct ttttcggcat
     3001 tctccgacat gacttcttgt accatggcaa gtgccatagc acgcagtttt tcgatgtcat
     3061 tcgtggtgtt gagagcggag atatccatac aggggagtat accactccag atacggatat
     3121 tcattatttt tcactgagtt agcagtgtgt ttttcgtgtt ttcagggcgc agttcaggtt
     3181 cattctgcca gacccatttc gtcaggtcat gtcccttaac ctgctgccag tcaacaccgg
     3241 caatcagcca gttaaactcg tcgggagtga ggtgccaggc agcgtcattt gcacgtggcc
     3301 agcggaagct gcctttgtgc agacggcggg tacacaacca caccccgtgt ttatcccacc
     3361 ggagaacttt gatacgcgaa cggactttgt taacaaagac gaaggcggct ccctcatgcc
     3421 atgtcgaccg gagttcatcc tgtatatact gcgtcagtga gtcgatgccc cggcgcatgt
     3481 caacaggttt aattgcgatg aagacattat caggactgag catatttgag tgccctgaag
     3541 acatcggtaa gttgtgacgg ctgacagcac atccgtactc caccgggaag gaagagcgtg
     3601 actggctcat tcgtgacggg ctgtggtaca tcagcatgca gtggtggcgc aatatgaacg
     3661 ggaagaacgg tcggttcatt tgcccggcgt tcagcttttg cgacatcctg cggccattcg
     3721 cgaagtgatg tgaagggaat atcgttgagt tcacagtatt gctgacgtgt aagaccactg
     3781 gcgcgccagg cagcaacgtg ctgccttttc tgttcaatgg tccatcgggg ttttgacatc
     3841 gattatctcc ggtaagttgg tgaatggatg tcggtaatac taactgaccg aagatccctg
     3901 tgaagatgac ttccccgtaa cgacactcaa aatttcggca aattcacagt cattccagtc
     3961 ggagatccag cgggcgtccc gtatgggcag tgaatattac cggaccctgc agaatggcgg
     4021 acgtcatgcc gctgctgccg cacgggaaca gcgccgcgcc cttgcagaac tgaacagtca
     4081 gttgacggaa attcgcggtt ctgctgtcgg aatggctggc gcatttgccg gtgcctttgc
     4141 caccggacac ctgatttcgc tggccgatga gtggggttcc gtgaatgccc gtctgaaaca
     4201 ggcatctcag tcatcggatg aattctcgtc atcacagaaa gtgctgatgg atatcagtca
     4261 gcgaacaggt accgcgtttt cggataatgc ggccctgttt gcccgttcgg ctgcctcgat
     4321 gcgtgaatat ggttacagtg ctgatgatgt gctgaaggtg acggaggcca tttcgacagg
     4381 actgaaactg tcaggggctg gagttgcgga atccggttcg gtgatcaccc agttcagcca
     4441 ggcactggca cagggtgtac tgcgtggcga agaatttaat gctgttaacg aaaatggcga
     4501 ccgggtgatc cgcgcgcttg ctgcggggat gggtgtggcc cgtaaagatc tgaaggcaat
     4561 ggcggatgac ggaaaactga cagcggataa agtggtccct gcgttaatca gccagctggg
     4621 gatattacgt gatgaatatg cggccatgcc ggaaacggtt tccggtagta tcacgaaggt
     4681 ggaaaacgcc tttatggcct gggtgggcga agtgaatgag gcctgcgggg tgacaaaaac
     4741 gctctccggc gtgctgaacg gtgttgccgg acagattgat aatgtggcaa cagctgtggg
     4801 ggcgctggtt gccgtcgggg ttgcccggta ctttggcaat atggcctccg gagcgatgtc
     4861 tgccacggca ggacttgtga cggctgcacg taatgaagtt gcactggcgg aagcacagtt
     4921 caggggaacg cagattgcca cggcgcgggc aagggcagcc gtgtaccgtg ctcagcaggc
     4981 cgtggcggca gcccgcggga cggagatgca gattgctgca gaggcccgtc tggcggccac
     5041 acaggaacgc ctgaacagaa atattgctgc cagaagcgcc gcccagaatg cgctgaacag
     5101 tacaacggcg gtgggctcac gtctgatgag cggtgcgctg gggctggttg gtggcgtacc
     5161 cggactggtg atgctggggg ctgcagcatg gtacacgctg taccagaatc aggagcaggc
     5221 ctgggagtct gcgcgccagt atgcactgac gatagatgaa atcgcgcata aaacgccgtc
     5281 aatgtctttg cctgaagcct cagataatga aggacgaaca cgggcggcgc tgacagagca
     5341 gaaccggctg attgatgaat aggctagtcg ggtgaaatcc ctgcaggaaa aaatcgcagg
     5401 atatcagtat gttctggcga acccgggctg gacgaccggt gacggattca tgataaacca
     5461 tctgacctcg gtgaagaccg taacggaagg gcttgctcag gcaacagagc agcttgccgt
     5521 tgagcagtcc cgtctggcac tgatgcagga aaaagcgcag tccattcagg atgtgcttgc
     5581 cgggctggaa gaccgtcgtg tggcgttaat tcgtcagcag gcggcagagc agaataaggt
     5641 gtaccagtcc atgctggtta tgaacggtca gcatacggaa ttcaaccgtc tgctggggct
     5701 gggtaatgaa ctgcttcagc agcggcaggg actggtgaat gtgccgttac ggctgccaca
     5761 ggccactctg gatgataaac agcagagtgc cctgacaaaa acagagcgtg agctggccct
     5821 gtccagactg aaaggggaag aaaaagagcg tgtccgactg gggtatgcgg cggatgacct
     5881 cggttttgtg ggtgatccgt atcaggaggc gagacaacgt tatatcagta atgccctgga
     5941 agcctggcgc aataacgagg cgaataaacc caaatcccgg ggtggaaaat cagagacgga
     6001 aaaagcggaa gacagttttt cccggctgct gaagcagcag aaagagcaac tggcactggc
     6061 ggggcagaat acagagctgg cgaagctgaa ataccagact gcgcagggcg aactgaaaac
     6121 cctgacggag atgcagaagc aggaactgct gcgcaatgcg gccctgattg accagcaaaa
     6181 aatccgggag cagttgcggt cccgggaaga gaccctgaag aatgataatg tggctgctcg
     6241 tgcatcaaat gaagcggaac tgctggggta cgggcaggga gagcggctcc gtgaacgcat
     6301 gcgggagttg cagcagatcc gcgacagttt ccgccagaag gatgcggacc ttcagtctca
     6361 gtatcagacc ggggatatca gtgaggattt ttacagacag gctctggcac agaacgcgca
     6421 gtatctgagt gaacgtctga aagagcagga agccttttat gccgaatcgg atgtgcagcg
     6481 tgcggactgg cagaaagggc tgcaggaggg attcagtaac tgggtggata atgcgtccga
     6541 ttacgcctca caggcagcac agcttgcgac ggagggtatc tcagggatgg tgaataacat
     6601 cacggagatg ctgaacggaa ataaagtgga atggcgcagc tgggcctcat cagtgctgca
     6661 ggaaatatca aaagttctta tgaatgccgc gattgtcaac gggatcaaga cggcggcaaa
     6721 cagtatgtcc ggagcgggag gatttatcgg cagtattggt agctggctgg gcggtgcggt
     6781 ggccaatgca aaaggcggtg tgtatacctc ggcaaacctg ggtgcgtaca gcaacagtat
     6841 tgtggatacg cccacgtact ttgcctttgc aaaaggggcg ggactgatgg gggaggccgg
     6901 tcctgaagcc attatgcccc tgacccgggc ggcggatggc tcgctgggtg tgcgagcggt
     6961 gggcagtatg aacggcagtg caggtctggt gtattccccg gtctaccata tcgccattca
     7021 gaatgacggg actaatggcc agatagggcc ggaagctgcg ggcagccttg tgcaactgat
     7081 tgaccagcgg gtgcaggcgg tgatgctgtc catgcgacgt gacggaggaa tgctgagtgg
     7141 ctgagataaa aacgctgcat ctggtcccgc gtgaagggat gcaggtgagt gagaaaccgt
     7201 cggtggcgag ggtacggttt ggtgacggtt atgaacagcg ccgcccgacg ggacttaatg
     7261 cccgactgaa gacgtttcag gcggtgttcc gggtgacgga tgaggcgacc cggcgatggc
     7321 tggaagagtt tttatcgtgg catggtggtt accgtgcctt tttgtggcga ccgccgaaac
     7381 ataaccggac ggtgagggtg gtatgccggg agtggagcgt cacagataac gccaggtaca
     7441 gtgatttcag ttgtacgatt gagcaggtgg tgaactgatg caggatattc acgaagaaag
     7501 tctgagcgag tcggttaaat cagagcagtc accgcgggtg gtactctggg aaattgacct
     7561 gacggtgcag ggtggtgagc ggtatttttt ctgtaatgag ctgaatgaaa aaggggagcc
     7621 ggtcacctgg caggggcgta agtatgaggc atacccgatt gacggcagcg gctttgagat
     7681 gaacggccgg ggcagcagtg ccagaccgtc gctgacggtg tccaatctgt tcggtctggt
     7741 caccgggatg gcggaagacc tgcagagtct ggtgggggcc acggtggtcc gccgccgggt
     7801 gtatgcccgt tttctggatg cggtgaattt cgttgcgggc aatccggagg cggacccgga
     7861 gcaggagctg agtgaccgct gggtggtgga gcagatgtcg cagctgacag ccatgacggc
     7921 ctcgtttgtg ctggctacac cgaccgagac ggacggggcg ctgtttcccg gtcgtatcat
     7981 gctggcgaac acctgtatgt ggacctaccg ctctgatgag tgtggttaca cgggcggggc
     8041 tgtggcggat gagttcgata aacccaccac ggatatccgt aaggacagat gcagcaagtg
     8101 catgcgcggg tgtgaactgc gcaggaatgt cggcaatttt ggcggtttcc tttccattaa
     8161 taaactttcg cagtaaatcc cgatttatga cacagactga atcagcgatt ctggcgcatg
     8221 cccggcggtg tgcgcctgcg gagtcgtgcg gcttcgtgat aagcacgccg gagggggagc
     8281 ggtatatccc ttgtgtgaat atttctgcag agccggaggc gtattttcgt atcgcaccgg
     8341 aagactggct gcgggcagag atgcaggggg agattgtggc actggtccac agtcatcccg
     8401 gtgagctgcc ctggctgagc gaggctgacc ggcggctgca gataaaaagc gcactgccct
     8461 ggtggctggt ctgccggggg gaaattcata aattccgctg tgtgccacat ctgacaggac
     8521 ggcgctttga gcacggggtg acggactgtt acacgctgtt ccgggatgca taccatctgg
     8581 cgggaattga tatgccggat tttcatcgcg aggatgactg gtggcgcaac ggccagaacc
     8641 tgtacctgga caatatggcg gtcaccggct tttaccgggt gcccctgtcc tctgcaccgc
     8701 cgggcgatat tctgctgtgc tgctttggtg cttcggtacc gaaccatgcc accatttact
     8761 gcggcaacgg tgagctgctt caccatctgc ctgaacaact gagtaaacgg gagaggtatt
     8821 ccgaaaaatg gcaacgacga acgcattctg tctggcgtca ccgccactgg cacgcatctg
     8881 ccttcacggg gatttgcaac gatttggccg ccgcctcagc ctgtatgtga acacggcagc
     8941 ggaagccatt cgcgccctgt cgatgcagat gccgggcttt cgccgtcaga tgaacgaagg
     9001 ctggtaccag atacgtattg ccggtgatga cacggcaccg gaggcggtgt atgcccgtct
     9061 tcacgaacag ctgggtgagg gaacggtcat ccacattgtg ccgcgactgg ccggggccgg
     9121 aaagggtgga ctgcagattg tgttgggggc ggcagccatc gtgggctctt tcttcactgc
     9181 cggggcatca atggcgttat ggggttcagc cctggcagcc ggtggttttt ctgccaccac
     9241 gatgctgttt tcacttggag ccagcatgat tctgggcggt gtggcccaga tgctggcccc
     9301 gaaggcaaaa acaccggatt accgcgcaac ggataacggc agacagaaca cgtacttttc
     9361 ctcgctggat aacatgattg cccaggggaa cccgatgccg gtgccttacg gggaaatgct
     9421 ggttggctcc cgccgtatat cccaggacat cagcacccgt gatgaaggcg ggggcggaaa
     9481 ggtcgtggtt atcgggcgac agggataaaa cataaaaaaa tcccgcagtg atcgcggagc
     9541 tgcggggaca gacaaatgaa gatcaatgtg aaggagttgt ttttgttact cgggcaaaaa
     9601 aacactaacg cagcgaaatt ataagcgcca cagtcagtgt gtgaaaatgt gaagatattc
     9661 agaaatttta ttccgtcatg acgcaggcac ccggtgaggt gcctgttgtt tttgtgagtg
     9721 aacaattatc acggtaagag gtgatgtaat gggcaaaggt ggcggcaggg cgcacacacc
     9781 gcgtgaggcg aaagacaatc tcaaatccac gcagatgatg agcgtgattg atgcgattgg
     9841 tgagggaccg atagaaggcc cggtgaaagg cctgcagagt attctggtga acaaaacccc
     9901 gctgacggac acggacggta atcccgtgat acacggtgtg accgcggtct ggcgtgccgg
     9961 ggagcaggag cagacaccac cggaaagctt tgagtcctcc ggctctgaaa ctgtactggg
    10021 tgtcgaagtg accagggcaa aaccggtaac acgcaccatt acgtcagcga acattgaccg
    10081 cctgcgggtg accttcgggg tgcagtcact ggtggagacc acgtcaaagg gtgaccgtaa
    10141 tccgtcctct gtccgtctgc tgattcagtt acagcgtaac ggtaactggg tgacagaaaa
    10201 ggatgtcacc attaacggca agaccacctc acagttcctt gcgtcggtga ttctggataa
    10261 tctgcctccc cgccccttta acatccggat ggtcagggag acggcggaca gcaccacgga
    10321 ccagctgcag aacagaacgc tgtggtcgtc atacaccgaa atcatcgatg tgaaacagtg
    10381 ctacccgaac acggccattg tggggatgca ggtggatgcg gagcagtttg gtggtcagca
    10441 gatgacggtg aactaccata tccgcggtcg catcatccag gtgccgtcaa actatgaccc
    10501 ggaaaaacgc acgtacagtg gtatctggga cggcagtctg aaaccggcat acagcaacaa
    10561 cccggcctgg tgcctgtggg acatgctgac tcacccgcgc tacggcatgg gaaaatgtct
    10621 gggggcggcg gatgtggaca agtgggcgct gtatgccatc gggcagtact gcgaccagac
    10681 ggtcccggat ggtttcgggg ggaccgagcc gcggatgacc tttaatgcgt acctggcaca
    10741 acagcgtaag gcgtgggacg ttctcagtga tttctgctct gcgatgcgct gtatgccggt
    10801 atggaacggt cagacgctga cgttcgttca ggaccgcccg tcggatgtgg tgtggccgta
    10861 caccaacagc gatgtggtgg tggatgataa cggcgtggga ttccgctaca gcttcagtgc
    10921 cctgaaggac cggcacacgg cggtggaggt gaattacacc gacccgcaga acggctggca
    10981 gacctccacg gaactggtgg aagacccgga agccatactg cgctacggac gcaacctgct
    11041 gaagatggat gcgtttggct gtacctgccg cggtcaggct caccgtgcag gtctgtgggt
    11101 gataaagacc ggactgctgg aaacgcagac ggtggacttc acgctcgggt cacaggggct
    11161 gcgtcacaca ccgggtgaca ttattgaaat ctgtgataac gactatgctg ggactatgac
    11221 cggcggacgt gtcctgtcca ttgatgctgc cacccgcacc ctgacgctgg accgtgaggt
    11281 taccctgccg gagacaggta catcggcggt gaacctgatt aacggcagtg gtaagccggt
    11341 gagtgtggac atcaccgcac accccgcgcc ggaccggata caggtcagta ccctgcctga
    11401 tggtgtggag acatacgggg tgtggggact ctccctgccg tcactgcgcc gtcgcctgtt
    11461 ccgctgtgtc tccgtccggg aaaacacgga tggcaccttt gccatcacgg cggtgcagca
    11521 cgtaccggaa aaagaagcca tcgtggataa cggtgcccgc tttgagccgc agtcaggctc
    11581 cctgaacagc gtcatcccac cggcagtgca gcacctgacg gtggaggtga gcgcagctga
    11641 cggccagtat ctggcacagg cgaaatggga cacgccgcgg gtggtgaagg gggtgcgctt
    11701 cagtctgcga ctgaccagcg gaagcggaga agacagccgt ctggtgacca ccgctatcac
    11761 tgcggataca gagcatcgtt tcagtggtct gccgctcggg gaatacaccc tgacagtcag
    11821 ggcaattaac agttatggcc agcagggcga accggccacc accaccttcc ggattaacgc
    11881 gccagcaaaa cccgccacca ttgaactgac gccggggtat tttcagataa cagcggtacc
    11941 gcgtcttgcg gtgtatgacc cgacggtaca gtttgagttc tggttttcgg aggcaaaaat
    12001 cgcagacaca tctcaggtgg aaacctctgc ccgttatctg gggaccggca gtcagtggag
    12061 tgtatccggc ccgcacatta agcccgggaa ggatttctgg ttttacgtgc gcagcgtcaa
    12121 cctggtgggg aaatctgctt ttgtggaggc cagtggacgg gccagcaatg atgcagaagg
    12181 gtatctgggg ctgtttcggg aaaaaatagg aaaactgcat ctggctcagg ggctgtggga
    12241 gctgatagac aacagccagc ttgcggatga gatggcggag atgaagacca ccatcaccga
    12301 aacccgcaat gaaatcacac agacggtcag taaaacgctg gaggaccaga gcgccaccat
    12361 acagcagata cagcgcgtgc agaaggacac aaatgatgac cttgctgcac tttacatgct
    12421 gaaggtacag aaaacaaaaa atggcatacc ctatgttgcc ggtattggag cggggattga
    12481 ggatactgat ggccagcccc tgagcaacat actgctgctg gctgaccgta ttgcgatgat
    12541 taacccggag gacggcaaca ccacgccgtt atttgtggcg caggggaatc agttgttcat
    12601 gaacgatgtg ttcctgaagc ggctgtttgc ggtgagtatc acctcgtccg gcaatccccc
    12661 gacgttttcc ctgacgccgg agggcaggct gaccgcaaga aatgctgata tcagcggtaa
    12721 cgtgaatgcg aactccggga cgctcaacaa cgtcacgatt aacgagaact gccgggttct
    12781 gggaaaactg tccgcgaacc agattgaagg cgatctcgtt aaaacagtgg gtaaggcttt
    12841 tccgcgggac tcccgggcac cggagcggtg gccatcaggg accgttaccg tcaggattta
    12901 tgacgatcag ccttttgacc ggcaaattgt tattccggcg gtggcattca gcggcgctaa
    12961 gcatgagaga gagcatactg atatttactc ctcatgccgt ctgatagtgc ggaaaaacgg
    13021 tgctgaaatt tataaccgta ccgcgctgga taatacgctg atttacagtt gcgttattga
    13081 tatgcctgcc ggtcacggtc acatgacgct ggagttttcg gtatcagcat ggctggtgaa
    13141 taactggtat cccacagcaa gtatcagcga tttgctggtt gtggtgatga agaaagccac
    13201 cgcaggcatc agtatcagct gaattttata acccatatac gggcgccaga aatggcgcct
    13261 tttttattgc agaaaagcga gaggtaatta tgcgtaaagt ttgtgcagcc attttgtccg
    13321 cagccatctg tctggctgta tccggtgcgc ctgcatgggc gtctgaacat cagtccacac
    13381 tgagcgcggg gtatcttcat gcccgtacga acgctcccgg cagcgataat ctgaacggga
    13441 ttaacgtgaa ataccgttat gagtttacgg acgcgctggg gctgattacg tccttcagtt
    13501 atgccaatgc tgaagatgag aaaaaaacgc actacagcga tacccgctgg catgaggatt
    13561 ccgttcgtaa ccgctggttc agcgtaatgg cggggccgtc tgtgcgcgtg aatgaatggt
    13621 tcagcgcgta tgcgatggcg ggtgtggctt acagccgtgt gtcgactttc tccggggatt
    13681 atctccgcgt aactgacaac aaggggaaaa cgcacgacgt gctgaccgga agtgatgacg
    13741 gtcgccacag caacacgtct ctggcgtggg gggctggcgt gcagtttaac ccgaccgaat
    13801 ccgtggccat tgatattgct tatgaaggtt ccggcagtgg cgactggcgc actgacggtt
    13861 tcatcgtggg tgtcggctat aaattctgat tagccaggta acacagtgtc atgacagccc
    13921 gccggttcag gcgggctttt ttgtggggtg aatatgacag taaagatttc tggtgtactg
    13981 aaagacggca caggaaaacc ggtacagaac tgcacaatcc agctgaaagc aaaacgtaac
    14041 agtaccacgg tggtggtgaa cacgctggcc tcagaaaatc cggatgaagc cgggcgttac
    14101 agtatggacg ttgagtatgg tcagtacagc gttattctgt tggtggaggg attcccgccg
    14161 tcacatgccg ggactatcac cgtgtatgaa gattctcaac ccggtacgct gaatgatttt
    14221 ctcggtgcca tgactgagga tgatgcccgt ccggaggcac tgcgtcgctt tgaactgatg
    14281 gtggaagagg tggtgcgtaa cgcagaggag gcgaagaaga atgccggaga ggcggagacg
    14341 tcagcgagga atgccggcat atcagccagt caggcagaag agagcgctgc aaatgctgac
    14401 acttcagcag gggatgcatc ggagtcagcc cggcaggcgg cagaaagtgc agcctcagca
    14461 aagcagtcag aggaggcgtc ctcgtcctcg gcctctgcgg ccgctcaaaa agccagtgag
    14521 tcattacaaa gtgcaacaga tgctgagttg tcaaaaaaga cggcagaaag tgcagccggt
    14581 aatgcagtca gggatgcaac gaccgcaaca gaaaaagccc gggagtcagc agaaagcgca
    14641 cagtcagcgg aacaaagcag gatagcggcg gaagaggccg taaaccgaat ccccaccgtg
    14701 gtgggacctc ccgggccaaa gggggaaccg gggcccgcgg gtcctcaggg gccgaaggga
    14761 gataaaggag agcgtggcga caccggcccg gcaggggcca aaaggtgaca aaggcgatcc
    14821 gggagtggct ggaccagcag gtccggcagg tgcgccgggg ccgaaaggcg ataaaggtga
    14881 tccgggagta gcaggtccag caggtccggc ggggccacag ggaccgaagg gagacacagg
    14941 agcccccggg caaggaacag aactgcttac tactgccaat acatggactc aggcacaaac
    15001 ttttaatggt ggtattaatg gcaatttgac ggtgaccgga aacggctcat ttaacgatat
    15061 tcagatccgt tcggataaac gcaacaagcg aaatctggta aaactggata atgcgttaga
    15121 tcgtctggag gcacttactg gttatcttta cgagatacag tactctgccg acggttggca
    15181 aacgtcggtt ggtttaattg ctcaggatgc acaaaaagca ttgcctgaac tggtaactga
    15241 agacgcagac gttatatctg gtgaaaaacg tctgcgtctt aactacaacg gcataattgc
    15301 attgttagtc gagggcttta aaacacttcg tcatgagatt aaagaactcc gggagaagta
    15361 aacgacagct gttgtagttt ctggtttcta ctgaatttaa attgtggggt gacactcacc
    15421 ccacgcattc agaaggggga gatgagatgg gggtaacatc gggatgggta ggctcttcgg
    15481 ctaagagcga aacaggtgag cagtggatgg gagccgccgg aaccaaactg ggactgagta
    15541 aaccttttat gatgagccaa atggttgggc gaactatggg ctgtaaaatt gcaactgagt
    15601 actataaatg gaaatcctct gacaaggttg ataactgggg cgcagttggc gctgactggc
    15661 ctttagaaga aaaaagtaaa ggtacaatta caaacgccgc aagctgcgga tcagggaggc
    15721 tggtaggggc tgtcgttaca ctttctcact ttttgacgaa ctctacaccg acagctgctg
    15781 tttatttagc cggtggtaaa gcaggtaaca tcaccgtaaa cgtaggtggt gctacacaaa
    15841 ccatgattta tcagggcgtt gttagtgggt tccagtatta ctggtcaggt tctgttagtt
    15901 ccgctttcgt ggaggcaatg aaaaagacgg gagtacccca ggatctaaaa attagttaaa
    15961 tggtaaataa ataattttaa aaacttcacg ttctacatac cggagacgcc ggatatatag
    16021 gatattgttt taagttgcca gagaaatttt tccggacgga tgctgataat aatgatgtgc
    16081 caatgacggc agcatcatgg atggcactga gtgaagcgac agagcaggcg atgtttgcga
    16141 agggagtgga gattaataca cggcagttgc agatgaaagc cgaggttgag gcgctgacag
    16201 acctgaaggc gatccgcagt tatgttgtcg gatggcctgc tggctgaata aaaaaacggg
    16261 accacgacca gtcccggaac catgagtttt agggtattag tttgttatca tagttagcgt
    16321 gctaagtatg ccatgtcagg ttgattagtg aagtgatgtt gttcgcattt ttgcacggcg
    16381 gagaatattc agatttttgg aaatccatat ttttcccgtg cgcgattaca tgcttcattt
    16441 acgatgctat tttcgccgga cattgcgaat tccctgcatg tggacggttt ttgtaaacag
    16501 agcaatatgc gttttctccg ggggggccgg caagagcgcc acatcgggga tttttctgat
    16561 tggtgccgcg catacagcga tgaaaaggag atatttgctc agtgagactg accgaaacct
    16621 ttccgccagc atcgtcagct tctgcccagt aaaaagagac gcggaaaatg cacaacaggc
    16681 accacacgtc atgcatggat tcagattgct cataattcac cagtacagct ataaatcgta
    16741 aagagaacag cggtacatcg tatgtaagaa cgtaccgcgg ctggctggtg aacttccgat
    16801 agtgcgagta ttgaatgatt tccagccgtt accgatttta cgtgctaatt agtgaacaaa
    16861 ccactcgtca gcagactccc aggtatcttt cagagtttcc tgaacaaaag ttttagctga
    16921 atctttatcg gcggtgcgcg taacagaaag gccatcgttg ctggtagctt ttacgatcac
    16981 ctctacatcg tcataacgtt tactgatgcg tcgggttaat tcttccttta acgcatccac
    17041 agcaccggtt ggcattttag tcattttttc tttggctatg cagatttcaa tacgcataaa
    17101 agtccctcta cactgtgttt gtatacagta tcatttttaa ctgtatggat aaacagtatt
    17161 aagggtgaag gaaagtgatt ttttggggca tgcatggggc aaaaatattt gttgtggggc
    17221 attttggggc atgattggga cactttgtta catatgaact ttgccgattt ttatatgaca
    17281 tggaaataca acgctttgat tcttctaaat aaaaaacatg ctcttgggcg ttctttagtg
    17341 atttttaaaa attccgtatc acgcagttaa agtggcgggc atactcttca aggctggtga
    17401 tccccaaccg cacccattta ggatgcgacc attgcggtag accgatgtaa atcataacgc
    17461 gtgaaggatc tcttccacgc tacgcacacg ggcgatgcgc gggtagatat gattaatgct
    17521 gttattgtgt tgctcggcgc tggcggcact acaggcgtct tcggcaatca ccagattaaa
    17581 gccaagttcc caggcattgc gggcggtgga ttcaacaccg atattggtcg agatcccaca
    17641 taacactatt gtatcgatac ctcggcggcg cagttgcaac tccagatccg taccgtaaaa
    17701 cgcaccccac tgacgtttga tgatttcgat atcactgtca gttgcaccta atgcagctgg
    17761 atgttgccac cagttttcgg gcaacacttt agcggggg
//
LOCUS       DADMJB010000080        17692 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.080, whole genome shotgun sequence.
ACCESSION   DADMJB010000080 DADMJB010000000
VERSION     DADMJB010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17692)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17692)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17692
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.080"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..224)
                     /locus_tag="JN078_002370"
     CDS             complement(<1..224)
                     /locus_tag="JN078_002370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2170 family protein"
                     /protein_id="HAY9041545.1"
                     /translation="MTWNLLALATALQTVPEQNIDVTNSENALIIKMNDYGDLQINIL
                     FTSRQMIIETFICPVSSISNPDEFNTFLLR"
     gene            complement(351..1082)
                     /gene="rlmB"
                     /locus_tag="JN078_002371"
     CDS             complement(351..1082)
                     /gene="rlmB"
                     /locus_tag="JN078_002371"
                     /EC_number="2.1.1.185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HAY9041546.1"
                     /translation="MSEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALE
                     AQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDG
                     VTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRT
                     MRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPM
                     AGSVSSLNVSVATGICLFEAVRQRS"
     gene            complement(1263..3704)
                     /gene="rnr"
                     /locus_tag="JN078_002372"
     CDS             complement(1263..3704)
                     /gene="rnr"
                     /locus_tag="JN078_002372"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HAY9041547.1"
                     /translation="MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVEL
                     HIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVE
                     GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEA
                     GVGFVVPDDGRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNM
                     GTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDA
                     RDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLP
                     EVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG
                     DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAECRIERIEQT
                     QRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL
                     PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHF
                     TSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRAD
                     EATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY
                     RFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTARE
                     KAKKGDAGKKGGKRRLVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIA
                     AATKAKRAAKKKVAE"
     gene            complement(3743..4168)
                     /gene="nsrR"
                     /locus_tag="JN078_002373"
     CDS             complement(3743..4168)
                     /gene="nsrR"
                     /locus_tag="JN078_002373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide-sensing transcriptional repressor
                     NsrR"
                     /protein_id="HAY9041548.1"
                     /translation="MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVK
                     IINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLSLVNCSSEFCHITPAC
                     RLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLLLVE"
     gene            complement(4373..5671)
                     /gene="purA"
                     /locus_tag="JN078_002374"
     CDS             complement(4373..5671)
                     /gene="purA"
                     /locus_tag="JN078_002374"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019842885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HAY9041549.1"
                     /translation="MGNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTL
                     VINGEKNVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSE
                     ACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAE
                     KLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDF
                     VMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGA
                     GPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLD
                     VLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGL
                     PQAALNYIKRIEELTGVPIDIISTGPDRTETMILRDPFDA"
     gene            complement(5775..5972)
                     /locus_tag="JN078_002375"
     CDS             complement(5775..5972)
                     /locus_tag="JN078_002375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2065 domain-containing protein"
                     /protein_id="HAY9041550.1"
                     /translation="MNSTIWLALALVLVLEGLGPMLYPKAWKKMISAMTNLPDNILRR
                     FGGGLVVAGVVVYYMLRKTIG"
     gene            complement(6054..7058)
                     /gene="hflC"
                     /locus_tag="JN078_002376"
     CDS             complement(6054..7058)
                     /gene="hflC"
                     /locus_tag="JN078_002376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HAY9041551.1"
                     /translation="MRKSVIAIIIIVLVVLYMSVFVVKEGERGITLRFGKVLRDDDNK
                     PLVYEPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSR
                     YYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLEVRDALNSGSA
                     GTEDEVTTPAADNAIAEAAERVTAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTE
                     VSEAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGD
                     AEAAKLFADAFSKDPDFYAFIRSLRAYENSFSGNQDVMVMSPDSDFFRYMKTPTSATR
                     "
     gene            complement(7061..8320)
                     /gene="hflK"
                     /locus_tag="JN078_002377"
     CDS             complement(7061..8320)
                     /gene="hflK"
                     /locus_tag="JN078_002377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HAY9041552.1"
                     /translation="MAWNQPGNNGQDRDPWGSSKPGGNSEGNGNKGGRDQGPPDLDDI
                     FRKLSKKLGGLGGGKGTGSGGGSSSQGPRPQLGGRVVTIAAAAIVIIWAASGFYTIKE
                     AERGVVTRFGKFSHLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVE
                     MNVQYRVTYPEKYLYSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQR
                     ELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQ
                     PRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKAAPEITRERLYIETMEKV
                     LGNTRKVLVNDKGGNLMVLPLDQMLKGGNAPAAKSDNGASNLLRLPPASSSTTSGASN
                     TSSTSQGDIMDQRRANAQRNDYQRQGE"
     gene            complement(8406..9686)
                     /gene="hflX"
                     /locus_tag="JN078_002378"
     CDS             complement(8406..9686)
                     /gene="hflX"
                     /locus_tag="JN078_002378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HAY9041553.1"
                     /translation="MFDRYDAGEQAVLVHIYFTKDKDMEDLQEFESLVSSAGVEALQV
                     ITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDHALSPAQERNLERLCECRVID
                     RTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQL
                     ETDRRLLRNRIVQIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT
                     EARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ
                     ATLLLHVIDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEE
                     NKPIRVWLSAQTGAGIPQLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIEKE
                     WMEEDGSVSLQVRMPIVDWRRLCKQEPALIDYLI"
     gene            complement(9763..10071)
                     /gene="hfq"
                     /locus_tag="JN078_002379"
     CDS             complement(9763..10071)
                     /gene="hfq"
                     /locus_tag="JN078_002379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HAY9041554.1"
                     /translation="MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVI
                     LLKNTVSQMVYKHAISTVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE
                     "
     gene            complement(10157..11107)
                     /gene="miaA"
                     /locus_tag="JN078_002380"
     CDS             complement(10157..11107)
                     /gene="miaA"
                     /locus_tag="JN078_002380"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HAY9041555.1"
                     /translation="MSDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSA
                     LIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRIP
                     LLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARI
                     HPNDPQRLSRALEVFFISGKTLTELTQTSGDALPYQVHQFAIAPASRELLHQRIEQRF
                     HQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSYLEGEISYDEMVYRGVCATR
                     QLAKRQITWLRGWEGVHWLDSEKPEQARDEVLQVVGAIAG"
     gene            complement(11100..12947)
                     /gene="mutL"
                     /locus_tag="JN078_002381"
     CDS             complement(11100..12947)
                     /gene="mutL"
                     /locus_tag="JN078_002381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HAY9041556.1"
                     /translation="MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDI
                     DIERGGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASI
                     SSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKF
                     LRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGT
                     AFLEQALAIEWQHGDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQAC
                     EDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQL
                     ETPLPLDDEPQPAPRSIPENRVAAGRNHFAEPAAREPVAPRYTPAPASGSRPAAPWPN
                     AQPGYQKQQGEVYRQLLQTPAPMQKLKAPEPQEPALAANSQSFGRVLTIVHSDCALLE
                     RDGNISLLALPVAERWLRQVQLTPGEAPVCAQPLLIPLRLKVSGEEKSALEKAQSALA
                     ELGIDFQSDAQHVTIRAVPLPLRQQNLQILIPELIGYLAKQSVFEPGNIAQWIARNLM
                     SEHAQWSMAQAITLLADVERLCPQLVKTPPGGLLQSVDLHPAIKALKDE"
     gene            complement(12957..14294)
                     /gene="amiB"
                     /locus_tag="JN078_002382"
     CDS             complement(12957..14294)
                     /gene="amiB"
                     /locus_tag="JN078_002382"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiB"
                     /protein_id="HAY9041557.1"
                     /translation="MMYRIRNWLVATLLLLCTPVGAATLSDIQVSNGNQQARITLSFI
                     GDPDYAFSHQSKRTVALDIKQTGVIQGLPLLFSGNNLVKAIRSGTPKDAQTLRLVVDL
                     TENGKTEAVKRQNGSNYTVVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNP
                     FKTESNRTTGVISSNTVTRPAARATANTGDKIIIAIDAGHGGQDPGAIGPGGTREKNV
                     TIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSIHADAAPNR
                     SATGASVWVLSNRRANSEMASWLEQHEKHSELLGGAGDVLANSQSDPYLSQAVLDLQF
                     GHSQRVGYDVATSMISQLQRIGEIHKRRPEHASLGVLRSPDIPSVLVETGFISNNSEE
                     RLLASDDYQQQLAEAIYKGLRNYFLAHPMQSAPQGATAQTASTVTTPDRTLPN"
     gene            complement(14313..14774)
                     /gene="tsaE"
                     /locus_tag="JN078_002383"
     CDS             complement(14313..14774)
                     /gene="tsaE"
                     /locus_tag="JN078_002383"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HAY9041558.1"
                     /translation="MMNRVIPLPDEQATLDLGERVAKACDGATVIYLYGDLGAGKTTF
                     SRGFLQALGHQGNVKSPTYTLVEPYTLDNLMVYHFDLYRLADPEELEFMGIRDYFAND
                     AICLVEWPQQGTGVLPDPDVEIHIDYQAQGREARVSAVSSAGELLLARLAG"
     gene            complement(14746..16293)
                     /gene="nnr"
                     /locus_tag="JN078_002384"
     CDS             complement(14746..16293)
                     /gene="nnr"
                     /locus_tag="JN078_002384"
                     /EC_number="4.2.1.136"
                     /EC_number="5.1.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HAY9041559.1"
                     /translation="MTDHTMKKNPVSIPHTVWYADDIRRGEREAADVLGLTLYELMLR
                     AGEAAFQVCRSAYPDARHWLVLCGHGNNGGDGYVVARLAKAVGIEVTLFAQESDKPLP
                     EEAALAREAWLNAGGEIHASNIVWPESVDLIVDALLGTGLRQAPRESISQLIDHANSH
                     PAPIVAVDIPSGLLAETGATPGAVINADHTITFIALKPGLLTGKARDVTGQLHFDSLG
                     LDSWLAGQETKIQRFSAEQLSHWLKPRRPTSHKGDHGRLVIIGGDHGTAGAIRMTGEA
                     ALRAGAGLVRVLTRSENIAPLLTARPELMVHELTMDSLTESLEWADVVVIGPGLGQQE
                     WGKKALQKVENFRKPMLWDADALNLLAINPDKRHNRVITPHPGEAARLLGCSVAEIES
                     DRLHCAKRLVQRYGGVAVLKGAGTVVAAHPDALGIIDAGNAGMASGGMGDVLSGIIGA
                     LLGQKLSPYDAACAGCVAHGAAADVLAARFGTRGMLATDLFSTLQRIVNPEVTDKNHD
                     ESSNSAP"
     gene            16292..17431
                     /gene="queG"
                     /locus_tag="JN078_002385"
     CDS             16292..17431
                     /gene="queG"
                     /locus_tag="JN078_002385"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HAY9041560.1"
                     /translation="MSEPLDLNQLAQKIKQWGLELGFQQVGITDTDLSESEPKLQAWL
                     DKQYHGEMDWMARHGMLRARPHELLPGTLRVISVRMNYLPANAAFASTLKNPKLGYVS
                     RYALGRDYHKLLRNRLKKLGEMIQQHCVSLNFRPFVDSAPILERPLAEKAGLGWTGKH
                     SLILNREAGSFFFLGELLVDIPLPVDQPVEEGCGKCVACMTICPTGAIVEPYTVDARR
                     CISYLTIELEGAIPEELRPLMGNRIYGCDDCQPICPWNRYSQLTTEEDFSPRKPLHAP
                     ELIELFAWSEEKFLKVTEGSAIRRIGHLRWLRNIAVALGNAPWDETILTALESRKGEH
                     PLLDEHIAWAIAQQIERRNACIVEVQLPKKQRLVRVIEKGLPRDA"
     gene            complement(17414..17467)
                     /locus_tag="JN078_002386"
     CDS             complement(17414..17467)
                     /locus_tag="JN078_002386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041561.1"
                     /translation="MRFYFYSQAVDESGVTR"
BASE COUNT         4068 a         5013 c         4392 g         4219 t
ORIGIN      
        1 tttcttaata agaaggtatt aaattcatct ggattgctga tactacttac cggacaaata
       61 aaggtttcga taatcatttg gcgggaagta aaaagaatat tgatttgcaa atcgccataa
      121 tcattcattt taataattaa tgcgttctcg ctatttgtta catcaatatt ttgttcaggt
      181 acagtttgca gcgccgtcgc cagcgccaac agattccatg tcatatatta ttccatatag
      241 atttagttta aatattaata aaatgaatat ttgcagtacg taattatctt accagctata
      301 gacaaaaaaa aaccatccaa atctggatgg cttttcataa ttcagaggaa ctagctgcgc
      361 tgacgcaccg cttcaaataa gcaaattccg gttgcaaccg aaacgttcag agaagaaaca
      421 cttcctgcca ttgggatgct gatcaactca tcgcaatgtt cacgggtcag gcgacgcata
      481 ccttcacctt ccgcgcccat caccagcgcc aggcgtccgg tcattttgct ctgatagagt
      541 gtatgatccg cctcacctgc cgtaccgacg atccagatat tctcttcctg caacatacgc
      601 atggtacgca ccaggttagt cacccgaatc agcggaacgc tttctgccgc gccacaggcc
      661 acttttttcg ccgtggcgtt gagctgggcg gagcgatctt tcggcacaat caccgcatga
      721 acaccagcgg catctgcgct acgcaggcac gcgccgaggt tatgcggatc ggttacaccg
      781 tcaaggatca gcaggaacgg ctgatcgagc gaagcgatca gatccggcaa atcattttcc
      841 tggtactgac gtcctggctt cacgcgggcg ataatgccct gatgcacggc accgtcgctt
      901 ttctcgtcga gatattggcg gtttgccagc tggataacca cgccctgggc ttcgagggcg
      961 tgaatcagcg gtaacagacg tttatcttca cggcctttta aaataaagac ttcctgaaaa
     1021 cgttcagggg cgcgctccag cagggcctgc actgcgtgga tgccgtaaat catttcgctc
     1081 attaatgtac tcgttgttta cgttttgcct gatgcactac gtttatccgg cctacatgat
     1141 ctctgcaata tattgaattt gcgtgattat gtaggccgga taaggcgttc acgccgcatc
     1201 cggcatgaac aaagcgcatt ttgtcagcaa tctaaccctc ttctgtttga agagggtaat
     1261 gatcactctg ccactttttt cttcgccgca cgcttcgctt tggtcgctgc agctattttc
     1321 tgcgttttcg ccgatggctt tttcgctttt ctcgcgtctt tcttcgctgc tttcggcttc
     1381 gtttttttct caccgcggaa ggcgctgtct ggctcaaagt ttaccttttt accgaccaga
     1441 cgacgcttgc cgcctttttt acctgcatcg ccttttttcg ctttctcgcg cgccgtttta
     1501 ccgacgttgc gcggtgcgcg ttcgctggag atcaggctaa agtcgatttt gcgctcgtcc
     1561 atattaaccg cttcgacgcg aacttccacg cgatcgccca gacgataagt ctggccgctg
     1621 gattcaccca tcagccgttg ccctacctgg tcaaagcgat agtagtcatt gtccagcgaa
     1681 gagacatgga ccagaccatc aatgaataag tcgtccagac ggacaaagaa tccaaagcca
     1741 gtgacgctgg aaattacgcc tttaaagacg ttacctacct ggtcgagcat gaagtcacac
     1801 ttcagccagt cagccacatc gcgcgttgct tcgtcggcac gacgttccgc catcgaacag
     1861 tgctgaccca gttgcagcat ttcttccatc gaataatggt agccgccggt ttcagtggtg
     1921 ttgccctgat gcccctgctc tttcgccagc agatatttaa tggcgcggtg cagcgtcagg
     1981 tctggataac gacgaatcgg cgaagtaaag tgcgcatagg actgcaatgc caggccaaag
     2041 tgaccacggt tttctggatc gtaaatcgcc tgtttcatcg agcgcagcag catggtttgc
     2101 agcatttctg catcaggacg atcggcaacc gactccagca gctccgcgta gtcacgcggt
     2161 tccggcttgt taccgcccgg cagttccagc cccagctccg ccagtactga acggaaagag
     2221 gtaatcgctt cggtgctcgg cttgtcgtga atacggaaca atgctggttc tttggctttc
     2281 tcaacgaaac gcgccgccga gatattcgcc agaatcatgc actcttcaat taacttgtgt
     2341 gcgtcgttac gctgagtctg ttcgatacgc tcaatacggc attcagcgtt gaaaataaac
     2401 ttcgcttctt cgctctcaaa tgagatcccg ccacgttctt cacgggcttt atccagcact
     2461 ttatagaggt tatgcaactc ttcgagatgc ttaaccagcg gagcgtactg ctcgcgcaga
     2521 tcctgatcgc cctgcagaat atgccagact ttggtgtagg tcagacgcgc gtgagagctc
     2581 atcaccgctt cgtagaattt gtagcccgtc aggcggcctt tcgacgaaac cgtcatctcg
     2641 cacaccatac acaggcggtc tacctgcgga ttgagcgagc acagaccgtt agagagcact
     2701 tccggcagca tagggataac ctgcgaaggg aagtacaccg acgtaccacg attacgcgct
     2761 tctctatcca gcggcgttgg cggacgcaca tagtagctga cgtcggcaat cgcgacccat
     2821 aaacgccagc cgccgccgcg ttttttctcg cagtaaaccg catcgtcaaa gtcacgggcg
     2881 tcttcgccat caatggtgac cagcggtaaa tcgcgcaaat cgacacggcc cgcttttgct
     2941 tcttccggca cttcttcttt cagcccggca acctgttgct caacagcctg cggccagatg
     3001 tacggaattt catgggtacg caaagcgata tcaaccgcca tgccggtgcc catattgtcg
     3061 cccagcactt cgacgatttt acccaccgct ttggtacggc gagtcgggcg ttgggtcagt
     3121 tcaacaacca ccacaaagcc catccgcgcg cccatgatct gatcgggcgg gattaagata
     3181 tcgaagctca gacggccatc gtcaggaacc acaaagccga cgcccgcttc ggtaaagtag
     3241 cgaccaacaa tctggctggt ttttggcacc agtacgcgga caatacgcgc ttcacgacga
     3301 cctttacggt cagcacccag cggctgagcc agcacctgat cgccatgaat gcaggttttc
     3361 atctgctcgc tggagagata caaatcatct ttacgccctt caacccgcag aaagccgtag
     3421 ccatcacggt ggccaataac ggtacctttc accaggtcga ggcgttccgg cagcgcatag
     3481 cactgacgac gagtgaagac cagttgacca tcgcgctcca tcgcgcgcag gcggcgacgc
     3541 aggccttcaa gctgctcttc gccttcaatg tgcagttcta ccgccagctc atcacggctg
     3601 gccggttttt cacgtttggt taaatgttcg aggataaatt cccgactagg gatgggattc
     3661 gcgtattttt cagcttcgcg ttcctggaaa ggatcttgtg acatctcggt tcctccgttg
     3721 tcatctctga tgaagatttt cgtcactcca ccagcaataa tttataaagc ggttgattct
     3781 cttcaaccaa atcggcaagc gtgtagttat ccagttccgt aagaaaactt tgcacggcct
     3841 tagaaagcgc ctgtttcaac cgacaggcag gtgtaatgtg gcaaaactca ctgctgcaat
     3901 tcaccagcga taagggctcc agctcgcgca ccacatcacc aatacgtatc gcactcgccg
     3961 gtttacccag gcgaatgccg ccattttttc cacgaacagc agtcacgtag ccggcacgac
     4021 taagttgatt gattattttg accatatgat tacgggagac gccgtagacg tcagtcactt
     4081 cagaaatact ggtcatccgc ccttctggca atgacgccat gtagatcagc gcacgtaatc
     4141 cgtaatcagt gaaactcgtt aactgcacat caacctcaaa agggaaatcg ggaaaaaata
     4201 catttatatt gatgataaac cagccacaag ctgtgtcgct aatttatttc agttcgggga
     4261 aggaaaaaag cgaggattta acactgtgtc ggatagcgta atggcttaac cgacacagca
     4321 atgtatcaca ctgttagccc ggcaggcaaa atatctgcca ggcgtaccag aattacgcgt
     4381 cgaacgggtc gcgcagaatc atagtttcag tacgatccgg accggtagag atgatatcga
     4441 tcggcacacc ggtcagctct tcaatacgct tgatgtagtt cagcgccgcc tgcggcagcc
     4501 cgctacgatc tttcacgccg aaagtggatt cagaccagcc cggcatggtt tcgtaaatcg
     4561 gctctacacc tttccagtcg tcagctgcca gcggagtggt agtcacttcg cgaccatccg
     4621 gcatacggta agccacgcag agtttaacct ctttcaggcc atccagaacg tccagtttag
     4681 tcaggcagaa gccagacagg gagttcagct gtaccgcacg acgaacggca acggtgtcca
     4741 gccagccggt acgacgacga cgacccgtcg ttgcgccgaa ttcgttaccc tgcttgcaga
     4801 ggaactcgcc agtttcatca aacagttcgg tcgggaaagg acctgcaccc acacgagtgg
     4861 agtaagcttt gaggataccc agaacgtaat caacataacg cgggcccagg ccggaaccgg
     4921 tcgccacgcc accagcagtg gtgttggaag aagttacgta cggataagta ccgtggtcga
     4981 tatccagcag cgtaccctgc gcaccttcaa acatgacgaa atcgccacgc tgacgcgcct
     5041 ggtcgagcag gtcagaaacg tcaaccacca tagaagtcag gatgtcggca acagccatcg
     5101 tatcatccag aactttctgg taatcaaccg cttcagcttt gtagtagtta accaactgga
     5161 agttgtgata ttccatcact tctttcagtt tttcagcgaa ggtttctttg tcgaaaaggt
     5221 cgccaacacg cagaccgcga cgtgccactt tatcttcata agcaggcccg ataccacgac
     5281 cggtggtgcc gatcgctttc gcgccacgcg ctttctcacg cgcgttatcc agcgcaacgt
     5341 gataatcaag gatcagcgga catgcttcag acagcagcag acgctcacga acggggatgc
     5401 cacggtcttc cagttctttc atctctttca tcagcgcggc cggagacagc acaacaccgt
     5461 taccgatgat gctggttaca ttctcgcgga gaatacctga tggaataaga tggagaacgt
     5521 ttttttcacc gttgattacg agagtatggc ctgcgttgtg accgccctgg tagcgtacaa
     5581 catatttagc tcgttcagtc agaagatcga cgatcttacc tttaccttcg tcaccccatt
     5641 gggtgcccag tacgacgacg ttgttaccca tttttcaaaa tcaccgtttg cttaaaaatg
     5701 gattctacca tcgctttttc agagttacag cactttttgc actcaaaaat gacctcgatc
     5761 agtctgtttt ttgttcagcc aatcgttttc ctcaacatgt agtagaccac aacgcccgca
     5821 accacaagtc caccgccaaa acgacgtaaa atattatcgg gcaaattggt catcgcagag
     5881 atcatcttct tccatgcctt cgggtaaagc atcggcccta aaccttccag taccaaaacc
     5941 agggcaagcg ccagccagat tgtcgaattc attcattatc cttatagaaa aagaaaacca
     6001 ccgacatccc tgaggatgcg gtggctttat tgacctgtac cgcagtcgtt atattaacgc
     6061 gttgcggaag tcggcgtctt catgtagcgg aagaaatcgc tatccgggct catgaccatc
     6121 acgtcctgat tgccagagaa gctgttctca taagcacgca ggctacggat gaatgcgtag
     6181 aagtccggat ctttactgaa tgcatcagca aacagtttgg ctgcttcggc atcgccttca
     6241 ccacgcatga tgcggccctg acgctcagct tctgccagcg ttctggtcac ttcatagtcg
     6301 gcagtcgcgc gcagtttttc cgcttcttcc tgaccttgtg aacggtgacg acgcgctacc
     6361 gcttcacgct cggcgcgcat acggttgtag atcgcttcag acacttcggt cggcaggttg
     6421 atctgcttga tacgcacatc gacaacttca atacccagcg ccgccatact gttcgggttg
     6481 atgaccggaa ctttgccctt cgtctcagcc gttacgcgct ctgccgcttc ggcaatggcg
     6541 ttatctgctg ccggggtagt aacttcatct tctgtacccg cagaaccgga gttcagcgcg
     6601 tcacgtactt cgagggtcag acgaccacgg gaatcagtga cgatatcttt cacgtccagg
     6661 cgaccaattt cagaacgcag acggtcagag aacttacgtt tcaacagcac ttccgcttgc
     6721 gaaatgtcgc caccacccgt tgccaggtag taacggctga aatcgctgat gcgccatttg
     6781 atgtaagagt cgacgatcag gtctttcttc tctttggtca caaagcggtc ggcctggttg
     6841 tccatggtct gaatacgtgc gtcgagcatt ttcaccgttt caatgaacgg tatcttgaaa
     6901 tgcagacccg gctcataaac cagaggtttg ttgtcatcgt cacgcagtac cttaccaaaa
     6961 cgcagcgtaa taccgcgctc accttctttg acgacaaaga cagacatgta aagcactacc
     7021 agcacgatga tgataatcgc gataactgac ttacgcatcg ttattccccc tgacgctggt
     7081 agtcgttacg ctgcgcgttg gcgcggcgtt ggtccataat atcgccctga ctggtggacg
     7141 acgtgttgct tgctccactg gttgtggagg aagaggctgg cggcaaacgc agcagattgc
     7201 tggcaccgtt atcgctcttc gccgcagggg cgttaccacc tttcagcatc tggtctaacg
     7261 gcagaaccat caggttgcca cctttatcgt taaccagcac tttgcgggtg ttacccaaca
     7321 ctttttccat cgtctcgata tacagacgct cgcgagtaat ttccggcgcg gctttatatt
     7381 ccggcagaag tttagcaaag cgcgccactt caccctgagc ttccaggatg gtctgggcct
     7441 tgtacgcacg cgcctcttcg aggatacgtt gcgcctgacc gttcgcacgc ggctgaactt
     7501 cgttggtata cgcttctgct tcacgaatgt attgctgttc gttttcacgc gcggcaatcg
     7561 catcgtcaaa cgccgctttt acttcttccg gcggacgagc agcctggaag ttgacgtcca
     7621 gcagagtgat gcccatgtca tacggacgaa tcgtctcttc cagttcgcgc tgggtatcgc
     7681 tacgaatcac ggtacgacct tccgtcagaa tgcggtccat ggtgtattta ccgataaccc
     7741 cgcgcagggc gctgtcggta gcctgacgca ggctgtcatc cgggctggtc acgctataca
     7801 gatatttttc cggataggta acgcggtact gcacgttcat ctcaacgcgc actacgttct
     7861 cgtccgacgt cagcatcaca ccggaagcgg ccagttcacg cacggcttcc acgtttaccg
     7921 gtttgacttc gtcgataaac gtcggtttcc agttcagacc cggctcaacc agatggctga
     7981 atttaccaaa gcgtgttacc acgccgcgtt cggcttcttt aatggtatag aaaccactgg
     8041 ccgcccagat aatgacaatc gctgccgctg cgatggtaac gacacgaccg ccaagctgcg
     8101 ggcgcgggcc ttgcgatgaa ctgccaccgc cagatccggt gcctttaccg ccgcccagac
     8161 caccgagctt tttgctcagt ttgcggaaga tatcatctaa atcaggtggc ccttgatcgc
     8221 gaccgccttt gtttccattt ccctcagagt tgccgccagg tttgctgctt ccccacgggt
     8281 cgcggtcttg tccgttatta ccgggctgat tccacgccat gtttgtgctc catatttgtt
     8341 atgcggtgat ccctgttgtc tttcgacgcc agaggatatg actccacgct tcagacgcta
     8401 cgccgttaga tcaggtaatc gatcaacgcc ggttcttgtt tacagaggcg acgccagtca
     8461 acgatcggca tacgaacttg cagacttacg ctgccgtcct cctccatcca ctctttttct
     8521 attgcctgaa gctgataaaa acgacttctc agacgccctt cctgcggtgg cagacgcaat
     8581 gtatgctgcg ccacctcgcc ggaaagccgc tccgtcaaag cctgaaaaag ctgtggtatc
     8641 cccgctccgg tctgtgcgga aagccagaca cggatcggtt tgttctcttc gtcccgatca
     8701 atacgcggtt cgaaatcttc cagcatatcg atcttgttca tcaccagcag ggttgggatc
     8761 tcgtgagcgt cgatctcttc aagaaccgta ttcaccgctt cgatgttttc ttgtacacgc
     8821 acatccgccg catcaatgac gtgcagcagt aatgtggctt gccgcgtctc ttgtaacgtg
     8881 gctttaaatg ccgccaccag atcgtgcggc agatggcgaa taaaccctac ggtatctgca
     8941 agtacggttt caccgacatc cgcgacgtca atacgccgca acgtcgggtc gagggtggca
     9001 aacaactggt ctgccgcgta gacccgcgct tcggtgatgc gattgaaaag ggtagattta
     9061 ccggcgttgg tatatcccac cagcgaaaca gtaggaacgt cggctttgat acgcgattgc
     9121 cgcccctgct cacgctgctt ttcaactctt tccaggcgcg actgtatctg cacgatgcga
     9181 ttacgcaaca aacgacggtc ggtttcgagc tgggtttcac ccggaccacg caaacctatc
     9241 ccgcctttct gtctttcaag gtgggtccag ccacgcacca ggcgcgtagc cagatggcgc
     9301 agctgcgcca gctcaacctg caacttaccc tcatgggtac gcgcacgttg ggcgaaaata
     9361 tctaaaataa ggccggtgcg gtcgatgaca cgacactcgc acaaacgctc caggttacgc
     9421 tcttgcgccg ggctcagggc atggtcaaaa agaacgaccg aagcacccgt cgctttgaca
     9481 gcttccgcaa tttcaactgc tttaccttca cctacaaaat actttgggtg cggcgcttta
     9541 cggctaccgg taatcacctg caatgcttcg acaccggcgg aagaaaccag agattcaaac
     9601 tcctggaggt cttccatatc tttgtctttc gtaaaataga tgtgtaccag taccgcctgc
     9661 tcaccagcat cataacggtc aaacaagcgt ataaccctct aaatagatca gcggggaacg
     9721 caggatcgct ggctccccgt gtaaaaaaaa cagcccgaaa ccttattcgg tttcttcgct
     9781 gtcctgttgc gcggaagtat tctgcgcgct gctaccatga tggtagttac tgctggtacc
     9841 gccaccggcg ttgttactgt gatgagaaac cggacgagac gggacaacag tagaaatcgc
     9901 gtgcttgtaa accatctggc tgaccgtgtt tttcaacagg atcacgaact gatcaaaaga
     9961 ctcgatttgc ccttgcagct taataccatt caccaaataa atagaaactg gaacacgttc
    10021 ccgacgcagt gcgttcagga acggatcttg taaagattgc cccttagcca ttctctcttt
    10081 tccttatatg cttatttgta ctttgaacct ttcgattctg aaaaaattgc gcacgatacg
    10141 tctcaattgt acacattcag cctgcgatag caccaacaac ctgtaatact tcgtcacgcg
    10201 cctgttctgg tttttcactg tcaagccagt gaaccccttc ccaaccacgc agccaggtta
    10261 tctgccgctt cgccaactgt ctcgtggcgc aaacacctcg ataaaccatt tcatcgtatg
    10321 agatttcgcc ttcaaggtaa gaccacatct ggcgataacc cacgcaacga atggaaggca
    10381 agtccgtatg caaatctcct cgggcaaaaa gcgcccggac ttctgcttca aaacctgaag
    10441 ccaacatctg atgaaaacgc tgctcaatgc gttgatggag cagttcacgg ctcgccgggg
    10501 cgatggcgaa ctgatgcacc tgatacggta gagcgtctcc tgacgtttgc gtcagttccg
    10561 ttaaagtttt acccgaaatg aaaaaaactt ccagtgcccg ggaaagcctt tgtggatcat
    10621 ttggatgaat ccttgctgcc gcaaccggat ctacctcctg aagttgacga tgcaatgact
    10681 cccaaccttg ctctgccgcc tgttgctcaa ttctggcccg cacttccggg tctgccgacg
    10741 gtagcggcga caacccttcc agcaatgcct tgaaatacaa catcgtaccg cccactaaca
    10801 gtgggatccg ccccgccgcg gtgatatcgg ccatttccgc cagcgcatcg cggcgaaaat
    10861 cagcagccga gtaagcctgc gacggatcgc gaatatccag caatcggtgc ggcgcggcga
    10921 gtaactcttc agcgttcggc ttcgccgtcc cgatatccat ccctttgtaa ataagggcag
    10981 aatcaacgct tatcaactct actggtaaaa ttttacgcag ctcaatggct aacgccgttt
    11041 taccggaggc cgtcggcccc atcaaaaaaa tcgccttagg caggctcgcc ttactgatat
    11101 cactcatctt tcagggcttt tatcgccgga tgtaaatcaa cagattgtaa cagaccaccc
    11161 ggcggcgttt tcacaagttg cggacataac cgttccacgt ccgccagcag ggttatggcc
    11221 tgtgccattg accactgcgc atgttcgctc atcagatttc gtgcaatcca ctgcgcaata
    11281 ttgccaggtt cgaatacgga ctgcttcgcc aggtagccta tcagttcagg aatcaagatt
    11341 tgtaaatttt gttggcgtaa gggtaaaggc acggccctga tggtcacatg ctgtgcatct
    11401 gactggaaat caatacccaa ttccgccagg gcagactgcg ctttttctaa tgccgatttt
    11461 tcttcgccag aaacttttag ccgcaacgga ataagcagcg gctgagcgca aactggcgct
    11521 tcacccgggg tcagttgtac ctgacgcagc caacgttctg ccactggcaa ggctaaaagt
    11581 gaaatgttgc cgtcgcgctc cagcaacgca cagtcggaat ggacgatagt cagtacccga
    11641 ccaaaactct gactgttcgc cgcaagtgca ggttcctgcg gttccggcgc ttttaatttt
    11701 tgcatcggcg cgggcgtttg caaaagctgg cgatacactt caccttgctg tttctggtag
    11761 cctggctgcg cattcggcca aggggcagcc ggacgactgc ctgatgctgg cgcaggagtg
    11821 tagcgcggag ctaccggctc acgagctgcc ggttctgcaa agtgattgcg ccccgccgcc
    11881 acgcggtttt ccggaatgga acgcggtgca ggttggggtt catcgtccag cggtagcggc
    11941 gtttccagtt gctgttgtag cacgctcagc acgccctgat agataaaatc atgcaccaga
    12001 cgcgactgat ggaaacgcac ttcgtgtttg gcggggtgca cgttgacgtc cacctgatgc
    12061 ggatcgatct ccagatacag cacaaatgcc ggttgctgat cggcccccag tttgtcttcg
    12121 caggcctggc ggatcgcgtg attgatcagg cgatcgcgca tcatgcgacc gttcacgtag
    12181 caatactgaa tttctgccag tgcgggcgtg gtgtgatttg gatcggccac ccagccgcgt
    12241 agcgtgagat cgccgtgttg ccattcaatc gccagcgctt gttcaagaaa agcggtgccg
    12301 caaatcgcgc ctaagcgccg ttctttttgc ccgccttccg gcactgcgcg gtactgacgc
    12361 acaattttac cgttatgcga caggttgatc gtgacgtcga aacgcgccag cgcaatgcgg
    12421 cggatgatct catcaatgtg gttaaattcg gttttctcgg tgcgcaggaa tttgcgccgc
    12481 gccggggtgt tgtagaacag atccagcacc tccagcgtcg tccccacagg atgcgccgcc
    12541 ggttttaccg tcacgttcat atcgcgccct tcggcatagg cctgccaggc ttcctgctgt
    12601 tctgcggtgc gtgaagtgag cgtcaggcgg gaaaccgaac tgatactcgc cagcgcctca
    12661 ccgcgaaagc ccaggctgat aatggcttcg agatcgtcca gagaggcgat tttactggtg
    12721 gcatgacgag ccagcgccag cgccagctca tcttttttga taccgcagcc gttatcacga
    12781 atgcggataa gtttcgcccc accgcgttcg atatcaatat cgatacgcgt cgcacctgca
    12841 tcgaggctgt tttccaccag ttctttgact accgacgcag gtcgctcgac cacctcacct
    12901 gcggcaatct ggttcgccag ttgtggcggt aagacctgaa ttggcatcaa tcgtccttag
    12961 tttggcagcg tgcgatctgg cgtcgtcacc gtactggccg tttgtgccgt tgcaccctgc
    13021 ggcgcagatt gcatcggatg cgcaaggaaa taattgcgca ggcctttgta aatggcttct
    13081 gccagctgtt gttggtaatc gtcgctcgcc agcaaacgtt cttcgctgtt gttgctgata
    13141 aaaccggttt cgaccagtac tgacgggata tccggcgaac gcagaacgcc gagactcgcg
    13201 tgttctggtc ggcgtttatg tatttcgcca atgcgttgca actgactgat catactggtc
    13261 gctacatcat accctacccg ctgggaatga ccgaactgta aatccagcac cgcctggctt
    13321 aaatagggat cagactgact gttcgccagc acatcgcccg ccccacccag cagctccgaa
    13381 tgtttctcgt gctgctccag ccagctggcc atttcgctgt tggcgcgacg gttagagagc
    13441 acccatacgg aagcgccagt cgcactgcgg ttcggtgcgg catcagcgtg aatcgacacg
    13501 aggaaattag cgttttgctt acgtgccaca tcgctgcgcc ccatcaccga aataaagtaa
    13561 tccccgtcac gggttaaaac gcctttaaac atcggatcgt cattgagcaa agtacgcaat
    13621 ttacgcgcga tggcgatggt gacatttttc tcccgcgtac caccggggcc gatagcgcca
    13681 gggtcctgac cgccgtgtcc ggcatcaata gcgatgataa ttttatcgcc agtgttagcc
    13741 gtcgcgcgcg ctgccggacg cgttaccgta ttactgctga taacacccgt agtgcggtta
    13801 ctttccgttt taaacggatt gcgcgccggt tcgctgacgc gcggtgcgac aaccgcaggc
    13861 gtttcaacgc gtttcgcaac cacgggcggc ggaggaggcg gtggcggcac atcggcgtta
    13921 atcgtaaaga cgacagtgta attgctgcca ttctgccgct tcaccgcttc ggttttacca
    13981 ttttcggtaa gatcgaccac cagccgtagc gtttgtgcat ctttaggcgt tccagagcga
    14041 atcgccttca ccagattatt gccgctgaac aacaacggca gtccctgaat cacgcccgtt
    14101 tgtttgatat cgagcgccac ggtgcgtttg ctttgatggc taaacgcata atcaggatcg
    14161 ccaataaaac tcaacgttat ccgcgcctgt tgattaccgt tagaaacctg aatatcagag
    14221 agcgtcgcgg cacccaccgg cgtgcacagc agcagcagcg tcgctaccaa ccaatttctg
    14281 atgcgataca tcatcccgcc acctttcaaa ggttaaccgg ctaaacgcgc cagcaacaat
    14341 tcacccgcag aggaaaccgc actcacgcgc gcctcacggc cttgtgcctg ataatcaatg
    14401 tgtatttcga catccgggtc aggaagaaca cctgtacctt gttgtggcca ctccaccagg
    14461 cagatggcat cgttggcaaa ataatcgcgg atccccataa actccagctc ctcgggatcg
    14521 gcaaggcggt acaaatcaaa gtgataaacc attaaattgt cgagcgtata gggttcgacc
    14581 agcgtataag tggggctttt gacattaccc tgatgaccca gagcttgtaa aaagccccgg
    14641 ctaaaggtgg tcttacctgc gcctaaatcg ccatacagat agattacggt tgcgccatcg
    14701 caggctttcg ctacccgctc gcccaggtct aatgttgcct gctcatcagg gagcggaatt
    14761 actcgattca tcatggtttt tatcagtcac ttccgggtta acaatacgct gtagcgtgga
    14821 aaagagatcg gttgccagca tcccgcgcgt tccaaaacgc gccgccagta cgtcagctgc
    14881 cgcaccgtgc gcgacacagc ccgcacaggc ggcatcatac ggcgacagtt tttgcccaag
    14941 caatgcgcca ataataccag agagcacatc gcccatgccg ccgctcgcca tgcctgcatt
    15001 tccggcatca ataatgccta aagcgtcagg atgggcggcg accacggttc cggcaccttt
    15061 cagcaccgct acgccgccat aacgttgtac cagacgtttg gcgcaatgta agcggtcact
    15121 ttcaatttca gcgacggaac agcctaacaa ccgtgcggcc tcgccaggat gcggcgtgat
    15181 cacgcgattg tgacgcttat cgggattgat tgccagcagg ttcaatgcat cggcatccca
    15241 caacatcggt ttgcgaaaat tctcaacttt ttgcagtgct tttttccccc actcttgctg
    15301 gcccagaccg ggaccaatca ccaccacatc ggcccattcc aggctttcgg taagagagtc
    15361 catcgtcagt tcatgcacca tcaattccgg tcgtgcagtc agcagcggcg caatgttttc
    15421 actgcgggtc agtactcgga ctaaaccagc accagcacgc agcgccgctt cccccgtcat
    15481 acgaatagcc cccgccgtgc cgtgatcgcc accgataatt accagccgcc cgtgatcgcc
    15541 tttatgcgaa gtcgggcgac gcggttttag ccagtgagaa agttgttctg ctgaaaaccg
    15601 ctgaattttc gtctcctgac ctgccagcca actatccagc cccagtgagt caaaatgcag
    15661 ttgtccggta acatcccgcg cttttccagt gagcaagcct ggtttcagcg caataaaagt
    15721 gatggtgtga tcggcgttga tcaccgcgcc tggcgtagcg ccagtttcag ccagcaggcc
    15781 ggaagggata tcaaccgcca caatcggcgc aggatgggaa ttagcgtggt cgattaactg
    15841 gctaatggat tcgcggggcg cttgccgcaa accggtaccg agcagcgcat caacaatcag
    15901 atctaccgat tcgggccaga caatattcga agcatggatc tcgccacccg cgtttaacca
    15961 tgcttcgcgt gccagcgcgg cctcttccgg caacggtttg tcgctctcct gggcaaacaa
    16021 cgtgacctca atgccgaccg ctttggccag tcgcgcgacc acgtagccat cgccgccgtt
    16081 attaccatga ccgcacagca ccagccagtg gcgggcgtca ggatacgccg aacgacacac
    16141 ctggaatgcg gcctcgccag cgcgaagcat cagctcatag agtgtgagcc ccagcacatc
    16201 tgccgcctcg cgttctccgc ggcggatatc gtcggcgtac cagacggtgt gtggtatact
    16261 tacggggttt ttcttcattg tatggtccgt catgtcagag cccctcgatc tcaatcagtt
    16321 agcgcaaaaa attaaacagt gggggctgga actgggcttt cagcaggtag gtattaccga
    16381 taccgatctc agcgagtccg agcccaaact gcaagcatgg ctggacaaac aataccacgg
    16441 cgaaatggac tggatggcac gtcacggtat gctgcgcgct cgccctcatg agttattgcc
    16501 cggtacgctg cgcgtgatca gcgtgcggat gaattacctt cctgctaacg ccgcatttgc
    16561 cagcacgctg aaaaacccca aactcggcta tgttagccgt tatgcgctgg gccgtgacta
    16621 tcacaaactt ctgcgcaacc gactcaaaaa gctgggcgag atgattcagc aacattgtgt
    16681 ttcgctgaat tttagaccgt ttgtcgattc tgcgcctatt ctcgagcgcc cgttagctga
    16741 aaaagctggg ctcggctgga caggtaagca ctcacttatc ctcaatcgcg aggccggttc
    16801 gttcttcttt ttaggcgaat tgctggtcga tattccgctg cccgtggatc aaccagtcga
    16861 ggaaggatgc ggtaaatgcg tggcctgtat gacgatttgc ccgaccggtg ccatcgtcga
    16921 gccatatacc gtcgatgctc gccgctgtat ctcttatctc accatcgaac ttgaaggggc
    16981 gatcccggaa gagttgcgac cgttaatggg aaaccgtatt tacggttgcg atgactgcca
    17041 gcctatctgc ccgtggaatc gctattcaca actcaccaca gaagaggatt tcagcccgcg
    17101 taagccgcta cacgcaccgg aactcattga gttattcgcc tggagcgaag agaagttttt
    17161 aaaagtcacg gaaggatcgg cgattcgtcg aattggtcac ctgcgttggc tgcgtaatat
    17221 cgccgtagca ttaggcaatg ccccttggga tgaaacgatt ttgacagcgc tggaaagtcg
    17281 taaaggtgag cacccacttc tcgatgagca catagcgtgg gcgattgcgc agcaaataga
    17341 gagacgaaat gcgtgcatag tcgaagtgca attgccgaaa aaacagcgtc tggttcgggt
    17401 gattgaaaaa gggttaccgc gtgacgcctg attcatccac agcttgtgaa taaaaataaa
    17461 aacgcattgc aattcaagac gaataaaatc gtcaagtgat cgactcgaca aaacggaatc
    17521 ttaattttta acttatctat caataggtta aaaaaatact attcaccgtg cgaagtttct
    17581 ttgaaattaa gattacagcc tgaggctgtg gataactctg tttacaagag tttgtcagag
    17641 acaacgaaaa ccagcaataa cgcatcgctg tggatatttt attgagagaa ga
//
LOCUS       DADMJB010000081        17503 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.081, whole genome shotgun sequence.
ACCESSION   DADMJB010000081 DADMJB010000000
VERSION     DADMJB010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17503)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17503)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17503
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.081"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..744
                     /locus_tag="JN078_002387"
     CDS             <1..744
                     /locus_tag="JN078_002387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2686 family protein"
                     /protein_id="HAY9041562.1"
                     /translation="SSTDKPAKLKFHQYARATLLSNRGRDHNCDGRRTVEIHKLDLSD
                     WQAFNKLATKCNAYDGVTMNGDNSFGWNHEATLDNIHAQKYNKAYAGARLTAELKYLL
                     QDVESFEPNSKYTIHEVVLGPGYGTPDYTGQTIGYVVTLPAQMPNCWSSELPTIDLYI
                     DQLHTVTGVSNALGFIIAALLNAYSDLPHDLKIGLRSLSNSAAIYSGLGFERVPQDRD
                     IRSDRMHLTPANHPDLWTQENGEWIYLRN"
     gene            complement(815..1264)
                     /gene="rplI"
                     /locus_tag="JN078_002388"
     CDS             complement(815..1264)
                     /gene="rplI"
                     /locus_tag="JN078_002388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HAY9041563.1"
                     /translation="MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNI
                     EFFEARRAELEAKLAEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADA
                     VTAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVAE"
     gene            complement(1306..1533)
                     /gene="rpsR"
                     /locus_tag="JN078_002389"
     CDS             complement(1306..1533)
                     /gene="rpsR"
                     /locus_tag="JN078_002389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012986941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HAY9041564.1"
                     /translation="MARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRI
                     TGTRAKYQRQLARAIKRARYLSLLPYTDRHQ"
     gene            complement(1538..1852)
                     /gene="priB"
                     /locus_tag="JN078_002390"
     CDS             complement(1538..1852)
                     /gene="priB"
                     /locus_tag="JN078_002390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001315977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HAY9041565.1"
                     /translation="MTNRLVLSGTVCRTPLRKVSPSGIPHCQFVLEHRSVQEEAGFHR
                     QAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS
                     GD"
     gene            complement(1859..2254)
                     /gene="rpsF"
                     /locus_tag="JN078_002391"
     CDS             complement(1859..2254)
                     /gene="rpsF"
                     /locus_tag="JN078_002391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HAY9041566.1"
                     /translation="MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGR
                     RQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPM
                     VKAKDERRERRDDFANETADDAEAGDSEE"
     gene            2581..2856
                     /locus_tag="JN078_002392"
     CDS             2581..2856
                     /locus_tag="JN078_002392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HAY9041567.1"
                     /translation="MFSRVLALLAVLLLSANTWAAIEINNHQARNMDDVQSLGVIYIN
                     HNFATESEARQALNEETDAQGATYYHVILMREPGSNGNMHASADIYR"
     gene            complement(2931..3482)
                     /locus_tag="JN078_002393"
     CDS             complement(2931..3482)
                     /locus_tag="JN078_002393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000996729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
                     /protein_id="HAY9041568.1"
                     /translation="MAINGLFVRTEPQRRRYGVALLVGVLSGIISAFVKWGAEVPLPP
                     RTFSGGRDEFNPPYIFLRDYLGIDPTQTVYTFSEHIINPVMVTHIIFSLVFAIGYCIV
                     AEIFPKVKLWQGILAGLIVTVAVHGIFCPALNLTPPLTQLPFDEYASEILGHIFWFWI
                     IEIMRRDLRNRITHEPDPEVAIR"
     gene            complement(3579..4265)
                     /locus_tag="JN078_002394"
     CDS             complement(3579..4265)
                     /locus_tag="JN078_002394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HAY9041569.1"
                     /translation="MQKLKQQVFEANMDLPRYGLVTFTWGNVSAIDRERGLVVIKPSG
                     VAYETMKADDMVVVDMSGKVVEGKYRPSSDTATHLELYRRYPSLGGIVHTHSTHATAW
                     AQAGLAIPALGTTHADYFFGDIPCTRGLSEEEVQGEYELNTGKVIIETLGDAEPLHTP
                     GIVVYQHGPFAWGKDAHDAVHNAVVMEEVAKMAWIARSINPQLNHIDSFLMNKHFMRK
                     HGPNAYYGQK"
     gene            complement(4265..5119)
                     /locus_tag="JN078_002395"
     CDS             complement(4265..5119)
                     /locus_tag="JN078_002395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase UlaE"
                     /protein_id="HAY9041570.1"
                     /translation="MLSKQIPLGIYEKALPAGECWLERLRLAKTLGFDFVEMSVDETD
                     ERLSRLDWSREQRLALVNAIVETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKA
                     IQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVTLAMEIMDYP
                     LMNSISKALGYAHYLNNPWFQLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPG
                     VFKNVPFGEGVVDFERCFETLKQSGYCGPYLIEMWSETAEDPAAEVVKARDWVKARMA
                     KAGMVEAA"
     gene            complement(5129..5779)
                     /gene="ulaD"
                     /locus_tag="JN078_002396"
     CDS             complement(5129..5779)
                     /gene="ulaD"
                     /locus_tag="JN078_002396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
                     /protein_id="HAY9041571.1"
                     /translation="MSLPMLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGV
                     RAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVA
                     KEFNGDVQIELTGYWTWEQAQQWRDAGIQQVVYHRSRDAQAAGVAWGEADITAIKRLS
                     DMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAELWG"
     gene            complement(5793..6257)
                     /gene="ulaC"
                     /locus_tag="JN078_002397"
     CDS             complement(5793..6257)
                     /gene="ulaC"
                     /locus_tag="JN078_002397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIA"
                     /protein_id="HAY9041572.1"
                     /translation="MKLRDSLAENKSIRLQAEAETWQDAVKIGVDLLVAADVVEPRYY
                     QAILDAVEQHGPYFVLAPGLAMPHGRPEEGVKKTGFALVTLKKPLEFNHEDNDPVDIL
                     ITMAAVDANTHQEVGIMQIVNLFEDEENFDRLRACRTEQEVLDLIDRTNAAA"
     gene            complement(6267..6572)
                     /gene="ulaB"
                     /locus_tag="JN078_002398"
     CDS             complement(6267..6572)
                     /gene="ulaB"
                     /locus_tag="JN078_002398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710059.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIB"
                     /protein_id="HAY9041573.1"
                     /translation="MTVRILAVCGNGQGSSMIMKMKVDQFLTQSNIDHTVNSCAVGEY
                     KSELSGADIIIASTHIAGEITVTGNKYVVGVRNMLSPADFGPKLLEVIKAHFPQDVK"
     gene            complement(6588..8036)
                     /gene="ulaA"
                     /locus_tag="JN078_002399"
     CDS             complement(6588..8036)
                     /gene="ulaA"
                     /locus_tag="JN078_002399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005009981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
                     /protein_id="HAY9041574.1"
                     /translation="MSAQHSGCAEYPVTSSSGDRLYNIFTVFFNQVMTNAPLLLGIVT
                     CLGYILLRKSVSVIIKGTIKTIIGFMLLQAGSGILTSTFKPVVAKMSEVYGINGAISD
                     TYASMMATIDRMGDAYSWVGYAVLLALALNICYVLLRRITGIRTIMLTGHIMFQQAGL
                     IAVTLFIFGYSMWTTIICTAILVSLYWGITSNMMYKPTQEVTDGCGFSIGHQQQFASW
                     IAYKVAPFLGKKEESVEDLKLPGWLNIFHDNIVSTAIVMTIFFGAILLSFGIDTVQAM
                     AGKVNWTVYILQTGFSFAVAIFIITQGVRMFVAELSEAFNGISQRLIPGAVLAIDCAA
                     IYSFAPNAVVWGFMWGTIGQLIAVGILVACGSSILIIPGFIPMFFSNATIGVFANHFG
                     GWRAALKICLVMGMIEIFGCVWAVKLTGMSAWMGMADWSILAPPMMQGFFSIGIAFMA
                     VIIVIALAYMFFAGRALRAEEDAEKQLAEQSA"
     gene            8340..9404
                     /gene="ulaG"
                     /locus_tag="JN078_002400"
     CDS             8340..9404
                     /gene="ulaG"
                     /locus_tag="JN078_002400"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003856017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ascorbate 6-phosphate lactonase"
                     /protein_id="HAY9041575.1"
                     /translation="MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLG
                     CTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTPPFVL
                     DPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKER
                     CIVVKPGDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPG
                     GSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKV
                     VIPFHHDIWSNFQAAPQEIRVQWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHY
                     PRGFDDCFTIEPDLPFKSFL"
     gene            9512..10267
                     /gene="ulaR"
                     /locus_tag="JN078_002401"
     CDS             9512..10267
                     /gene="ulaR"
                     /locus_tag="JN078_002401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator UlaR"
                     /protein_id="HAY9041576.1"
                     /translation="MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLD
                     ESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVINCG
                     STAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSEN
                     SLYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLF
                     SRADQIDMLITGKNANPEILQQLEAQGVSILRV"
     gene            complement(10264..11013)
                     /gene="yjfP"
                     /locus_tag="JN078_002402"
     CDS             complement(10264..11013)
                     /gene="yjfP"
                     /locus_tag="JN078_002402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HAY9041577.1"
                     /translation="MIEIESRELADIPVLHAYPVGQKDTPLPCVIFYHGFTSSSLVYS
                     YFAVALAQAGLRVIMPDAPDHGSRFSSDEARRLNQFWQILLQSMQEFTTLRAAIAEEN
                     WLLDDRLAVGGASMGAMTALGITARHPTVKCTASMMGSGYFTSLARSLFPPLIPETAA
                     QQNEFNNIIAPLAEWEATNHLEQLGDRPLLLWHGLDDDVVPADESLRLQQALSETGRD
                     KLLTCSWQPGVRHRITPEALDAAVTFFRQHL"
     gene            11195..11524
                     /gene="bsmA"
                     /locus_tag="JN078_002403"
     CDS             11195..11524
                     /gene="bsmA"
                     /locus_tag="JN078_002403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313192.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm peroxide resistance protein BsmA"
                     /protein_id="HAY9041578.1"
                     /translation="MVSRKRNSVIYRFACLLLVLMLSACSALQGTPQPAPPVTNHPQE
                     IRRDQTQGLQRIGSVSTMVRGSPDDALAEIRAKAVAAKADYYVVVMVDETIVTGQWYS
                     QAILYRK"
     gene            11673..11948
                     /gene="yjfN"
                     /locus_tag="JN078_002404"
     CDS             11673..11948
                     /gene="yjfN"
                     /locus_tag="JN078_002404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418609.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease activator YjfN"
                     /protein_id="HAY9041579.1"
                     /translation="MKQLLASPSLQLVTYPASATAQSAEFASADCVTGLNEIGQISVS
                     NISGDPQDVERIVALKADEQGASWYRIITMYEDQQPDNWRVQAILYA"
     gene            complement(12065..13690)
                     /locus_tag="JN078_002405"
     CDS             complement(12065..13690)
                     /locus_tag="JN078_002405"
                     /EC_number="1.3.8.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418608.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isovaleryl-CoA dehydrogenase"
                     /protein_id="HAY9041580.1"
                     /translation="MHWQTHTVFNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLA
                     SIGQQLGTAESLELGRLANVNPPELLRYDAQGRRLDDVRFHPAWHLLMQALCTNRVHN
                     LAWEEDARSGAFVARAARFMLHAQVEAGSLCPITMTFAATPLLLQMLPTPFQDWTTPL
                     LSDRYDSLLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS
                     VPQSDAHLVLAQTTGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDA
                     IGWLLGQEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQ
                     PLMCHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMPF
                     VAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQAGVYDLLS
                     EAFVEVKGQDRYFDRAVRRLQQQLRKPAEELGREITHQLFLLGCGAQMLKYASPPMAQ
                     AWCQVMLDTRGGVRLSEQIQNDLLLRATGGVCV"
     gene            complement(13774..14832)
                     /locus_tag="JN078_002406"
     CDS             complement(13774..14832)
                     /locus_tag="JN078_002406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HAY9041581.1"
                     /translation="MLRHNVPVRRDLDQIAANNGFDFHIIDNEIYWDESRAYRFTLRQ
                     IEEQIEKPTAELHQMCLEVVDRAVKDEEILTQLAIPPLYWDVIAESWRARDPSLYGRM
                     DFAWCGNAPVKLLEYNAIQERLISRFSELYSREPFYFCCCQDTDEDRSTVLYLQDCAQ
                     QAGQESRFIYIEDLGLGVGGVLTDLDDNVIQRAFKLYPLEWMMRDDNGPLLRKRREQW
                     VEPLWKSILSNKGLMPLLWRFFPGHPNLLASWFEGEKPQIAAGESYVRKPIYSREGGN
                     VTIFDGQNNVVDHADGDYADEPMIYQAFQPLPRFGDSYTLIGSWIVDDEACGMGIRED
                     NTLITKDTSRFVPHYIAG"
     gene            complement(14835..15473)
                     /locus_tag="JN078_002407"
     CDS             complement(14835..15473)
                     /locus_tag="JN078_002407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1190 domain-containing protein"
                     /protein_id="HAY9041582.1"
                     /translation="MARKRKSRNNSKIGHGAISRIGRPNNPFEPRRNRYAQKYLTLAL
                     MGGAAFFVLKGCGDSGDVDNDGDGTFYSTVQDCIDDGNNADICARGWNNAKAAFYADV
                     PKNMTQQNCQSKYENCYYDNVEQSWIPVVSGFLLSRVIRKDRDEPFVYNSGGSSFASR
                     PVWLNTSGDYSWRSGSGKKESYSSGGFTTKKASTVSRGGYGRSSSARGHWGG"
     gene            complement(15483..15881)
                     /locus_tag="JN078_002408"
     CDS             complement(15483..15881)
                     /locus_tag="JN078_002408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF350 domain-containing protein"
                     /protein_id="HAY9041583.1"
                     /translation="MHILDSLLAFSAYFFIGVAMVIIFLFIYSKITPHNEWQLIKNNN
                     TAVSLAFSGTLLGYVIPLSSAAINAVSIPDYFAWGGIALVIQLLVFAGVRLYMPALSE
                     KIINHNTAAGMFMGTAALAGGIFNAACMTW"
     gene            complement(15899..16558)
                     /locus_tag="JN078_002409"
     CDS             complement(15899..16558)
                     /locus_tag="JN078_002409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfK family protein"
                     /protein_id="HAY9041584.1"
                     /translation="MSGFFQRLFGKDNKPAIARGPLGLHLNSGFTLDTLAFRLLEDEL
                     LIALPGEEFTVAAVSRIDLGGGSQIFRYYTSGDEFLQINTTGGEDIDDIDDIKLFVYE
                     ESYGISKESHWREAINAKTMGAMTLNWQEKRWQRFFNSEEPGNIEPVYMLEKVENQNH
                     AKWEVHNFTMGYQRQVTEDTYEYLLLNGEESFNDLGEPEWLFSRALGVDIPLTSLHII
                     G"
     gene            complement(16609..17307)
                     /locus_tag="JN078_002410"
     CDS             complement(16609..17307)
                     /locus_tag="JN078_002410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspA/IM30 family protein"
                     /protein_id="HAY9041585.1"
                     /translation="MGILKSLFTLGKSFISQAEESIEETQGVRMLEQHIRDAKAELDK
                     AGKSRVDLLARVKLSHDKLKDLRERKASLEARALEALSKNVNPSLINEVAEEIARLEN
                     LITAEEQVLSNLEVSRDGVEKAVTATAQRIAQFEQQMEVVKATEAMQRAQQAVTTSTV
                     GASSSVSTAAESLKRLQTRQAERQARLDAAAQLEKVADGRDLDEKLAEAGIGGSNKSR
                     AQDVLARLQRQQGE"
     gene            complement(17380..>17503)
                     /locus_tag="JN078_002411"
     CDS             complement(17380..>17503)
                     /locus_tag="JN078_002411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2170 family protein"
                     /protein_id="HAY9041586.1"
                     /translation="QKMMPLSSVGISSVQQEEYYIVFGALSLKSSLEDILLEIT"
BASE COUNT         4463 a         4678 c         4188 g         4174 t
ORIGIN      
        1 tcgtccaccg acaaaccagc aaaattaaaa tttcatcaat acgcacgcgc tacattactg
       61 tcaaatcgtg gaagagatca taattgcgat ggcagacgta ctgttgagat ccacaaacta
      121 gatctctctg actggcaagc attcaataag ttagcaacga agtgtaatgc ttacgatgga
      181 gtaacaatga atggtgataa ttcttttgga tggaaccatg aagctacatt agataatatt
      241 cacgcccaga aatacaataa agcttacgcg ggtgcgaggt taaccgcaga actgaaatat
      301 ttattgcaag atgtcgaatc cttcgaaccc aacagtaaat acacaataca cgaagtggtt
      361 ttgggacctg gttatggtac tccagactat accggccaaa cgataggata cgttgtaacc
      421 cttcctgccc aaatgcctaa ttgctggtca tctgaactac caacaatcga tctttatatc
      481 gaccaacttc acactgttac aggcgtttct aatgccctcg gattcatcat tgctgcattg
      541 ctaaacgcgt attctgattt accccatgat ttgaaaattg gtctgcgttc cttatcaaat
      601 tcagcagcaa tctactcggg tttaggtttc gagcgagtgc cgcaggaccg agacataagg
      661 agtgatcgta tgcatctaac gccagcaaac catcctgact tatggacaca agagaatggt
      721 gaatggatct acttgcgaaa ctaatacctg acgaaaaata gaaagcaaaa cgccgaccaa
      781 tggtcggcgt ttttacgtct cgttgaataa cgaattattc agctactacg tttacgatca
      841 ctttcgcgaa tacttcgctg tgaacctgga agctcacttc gtgttcgcca gtggtacgca
      901 gaacgccgtt cggcagacga acttcgctct tagccacttc aacgccagct gcagttacag
      961 cgtcagcgat gtcgcgagta ccgatggaac cgaacagttt accttcgtcg ccagctttag
     1021 acgcgatggt aacagtttcc agtgcattga ttttctcagc gcgagcatta gcagctgcca
     1081 gaacttcagc cagtttagct tccagttcag cgcgacgtgc ttcgaagaat tcaatgtttt
     1141 tcttggtagc tggaacagct ttaccctgcg gtaccaggaa gttacgagca tagcccgctt
     1201 taacgtttac ctgatcacct aggctaccca ggtttgctac tttatcaagc agaataactt
     1261 gcattacctt atcctctcaa agtcgtatta atggaccgtg accgattact gatggcgatc
     1321 agtgtacggc agcagggaca ggtagcgagc gcgtttgata gcgcgagcca gctgacgctg
     1381 gtattttgca cgggtaccgg tgatacggct tgggacaatc ttaccgcttt cggtgatgta
     1441 gtttttcagc gtagcgatat ctttatagtc gatctcttga acgccttccg cggtgaaacg
     1501 gcagaacttg cgacgacgga aataacgtgc catatggcta gtctccagaa tctatcaatt
     1561 caatctgctc ggcatgcaaa accattttgc tcagtccgtt ctttgccttg tggcatgaaa
     1621 tgaacccctg aacggttatg cgactgccga ccgttatact gtgagtaatg gcttggtttt
     1681 cgtgtccgct aacaataacg ggcatttggc accacgcctg ccggtgaaaa ccggcttcct
     1741 cctgcacaga acgatgctca agcacgaact ggcagtgagg aattcctgat ggactgacct
     1801 ttcgaagggg agtcctgcac acggtgccgg acaacaccag acggttggtc atcagaaatt
     1861 actcttcaga atccccagct tcagcatcat cagcggtttc gtttgcgaaa tcatcgcgac
     1921 gctcacggcg ctcgtctttc gctttaacca tcggagatgc ttcggtaaca gcgtgcttgg
     1981 tacgcataac catgctgcgg ataacggcat cgttgaagcg gaaggtagtt tccagctcat
     2041 cgatcacttc ctgcggagct tcaacgttca tcagaacgta gtgtgctttg tgcagtttgt
     2101 tgatcgggta agccagctga cggcggcccc agtcttccag acggtggatc ttgccttctg
     2161 caccagtgat ggcagcagtg tagcgctcga tcatgcccgg aacctgttcg ctctggtcag
     2221 gatggaccat aaaaacgatt tcgtaatgac gcatcgaatt gctccttacg gattattcag
     2281 cctcctgtct gggtcagccg aatcccgggg aggcaaggaa cgtgttaaag gtcggctgaa
     2341 aaatgacgcg ttatagtact tgtatgcccc actaaactca aggccagccg acaaataaat
     2401 ctcatctttc gctcaaaaga actaactcgc tgatttgaag ttcatcacat tccgtcacag
     2461 tgttttttcg aacaactgca tcagaaatgg tcaccatcaa cttctttatc attgattaaa
     2521 attaaatcag aagatcatca cagaggagag cacacaaagt cagccgtcga ggaggtatct
     2581 atgttcagtc gtgttttagc ccttctggct gtgcttttgc taagtgcaaa tacatgggca
     2641 gccattgaaa ttaataacca ccaggccaga aatatggacg acgtacagag cttaggcgtg
     2701 atttatatca atcataattt cgccactgaa agcgaagcac gtcaggcatt aaatgaagag
     2761 acagatgcgc agggcgcaac gtactaccac gtaattctga tgcgggaacc ggggagtaac
     2821 ggcaatatgc acgccagcgc ggatatttat cgctagcacc aggtataacc aacgaaacat
     2881 tgccatagtt tgctttgccc ccttcgcagg gggctttttt atacggttat tcaccggatt
     2941 gcgacttccg gatctggctc atgagtaatg cgattacgta agtcgcggcg cataatttct
     3001 attatccaga accagaaaat atgccccagg atttcagagg catattcgtc aaaaggcaat
     3061 tgagtgagcg gcggcgttaa attcagcgcc gggcaaaata taccgtggac tgccactgtc
     3121 acaataagcc ctgctaatat cccctgccat aatttcactt tcgggaaaat ttccgcgaca
     3181 atacaatacc ctatcgcaaa aaccagtgag aagatgatat gcgtcaccat caccgggttg
     3241 ataatatgtt ccgagaatgt atacacagtt tgggttgggt cgatacctaa ataatcccgt
     3301 agaaagatat acggcgggtt aaattcatcg cgaccaccgg aaaatgtgcg cggtggcaag
     3361 gggacttccg ctccccattt aacaaatgct gaaataattc ctgaaagtac acccacaagt
     3421 aacgcaacgc catagcggcg acgttgcggc tccgttctga caaacaatcc attgatagcc
     3481 ataaaaacac ctgttgttta tacgattttt taactgaagc ggccccggaa tcagaccaat
     3541 tacatcccgc aggaggtaat aattccgggg cgcactgctt acttctgccc gtaataggcg
     3601 ttaggaccgt gcttacgcat gaagtgttta ttcatgagga agctgtcgat gtgattcagt
     3661 tgtgggttaa tactgcgcgc aatccacgcc attttcgcca cttcttccat caccaccgcg
     3721 ttatgcaccg cgtcgtgggc atctttcccc caggcgaacg gcccgtgctg atacaccaca
     3781 attcccggcg tatgcagcgg ctcggcgtca cccagcgttt cgataatcac tttgccggtg
     3841 ttcagttcat actcgccctg cacctcttct tcgcttaatc cacgcgtaca cgggatgtcg
     3901 ccaaagaagt agtcggcgtg cgtggtgcct aacgccggga tcgccagccc cgcctgcgcc
     3961 catgcggtgg catgagtgga atgggtatgg acaatgccgc cgagcgacgg gtaacgacgg
     4021 tagagttcaa gatgcgtcgc ggtgtcagaa gacgggcgat acttcccttc taccaccttg
     4081 ccgctcatat cgaccaccac catatcgtct gctttcatgg tttcgtaggc aacgccgctg
     4141 ggcttgatca ccaccagccc gcgttcgcgg tcgatagcgc tgacgttgcc ccaggtaaag
     4201 gtcaccagcc catagcgcgg cagatccatg ttggcttcaa acacctgctg ttttagcttt
     4261 tgcattatgc cgcctccacc atgcctgctt tggccatgcg cgctttcacc caatcacgcg
     4321 ctttcaccac ttctgccgcc gggtcttccg ccgtttcgct ccacatctca atcaggtacg
     4381 gcccgcaata gccactctgt ttgagcgttt cgaagcaacg ttcgaaatcc accacacctt
     4441 cgccaaatgg cacgtttttg aagacgcccg gtttggtgtc tttcacatgc accgcgacga
     4501 tatgcccgat tccggcctgc aactccatct gcacatcgtt gtcccacgcc gacaggttgc
     4561 cgatatctgg gtagagctgg aaccacgggt tgttgagata gtgcgcgtaa cccagcgcct
     4621 tgctgatgga gttcatcaac ggataatcca tgatctccat cgccagcgtc acctgcgcgc
     4681 ggctcgccat ctcaacgctc tctttcaggc cgtcacggaa acgacgacgc gtttcgttat
     4741 tggcttcctg atagtaaacg tcatagcccg ccagctggat cacgcgaatg ccaacgtcct
     4801 gggcgaactg gatggcttta cgcataatct ccagcccctg cgcccgcacc gcgtcatctt
     4861 cgctgcccaa cgggaaacga cgatgggcag aaaggcacat ggacggcaca cgcacgccgg
     4921 tttcaacaat cgcattcacc agcgccagac gctgctcgcg gctccagtcg aggcgcgaca
     4981 ggcgctcgtc agtttcatct accgacatct cgacaaaatc gaagcccaac gtttttgcca
     5041 gtcgcaggcg ttccagccag cactccccgg cggggagcgc tttttcatag atgccaagcg
     5101 ggatttgttt ggacaacata tccgctcctt agccccacag ttcggcgatg gaacgtttga
     5161 actgacgcgc ggcttcaacc ggagaagcgg catcacggat gctgcgaccg gcgataaaca
     5221 catgaattgg aatgcctttg aacagcggca gatcttccag cgccaggcca ccggtgacgg
     5281 tgactttgaa gcccatatcg gaaagacgtt tgatcgcagt gatatcggct tcaccccacg
     5341 ccacgccagc ggcctgcgcg tcacggctgc ggtgataaac cacctgctga atacctgcgt
     5401 cgcgccactg ttgcgcctgt tcccaggtcc agtaaccggt cagttcgatc tgcacgtcgc
     5461 cgttaaactc ttttgctacg tccagcgcac ctttggcggt gttgatatcc gcacaacaaa
     5521 tcacggtcac ccagtcagcg ttggcttcga agcacatacg agaaagaatt ttgcccgcat
     5581 cggcaatttt ggcgtctgcc agcacgattt tgtgcgggta gagcgctttc agatcgcgaa
     5641 ccgcacgcac gccttcgccc acgcacagaa tggtacccac ttcgataatg tcgacttctt
     5701 cggcaatcag gcgagtggtt tcgtaggcgc tatccatagt ctggttgtcc agcgcgactt
     5761 gcaacatcgg taatgacatc ttcaattcct tcttaagctg ccgcgttggt gcggtcaatg
     5821 agatccagta cttcctgctc ggtacggcag gcacgtaaac ggtcgaaatt ttcttcatct
     5881 tcaaacaggt tgacgatctg catgatgccc acttcctggt gcgtgttggc atcgaccgcc
     5941 gccatggtga tgaggatatc caccgggtcg ttatcttcgt ggttgaactc cagcggcttt
     6001 ttcagcgtca ccagcgcaaa accggttttc ttaacgccct cttccgggcg accgtgcggc
     6061 attgccaggc ctggtgcgag cacaaagtac ggaccgtgct gttcaaccgc atccagaatc
     6121 gcctggtagt aacgcggctc gacaacatcc gccgccacca gcaggtcaac gccgattttt
     6181 actgcgtcct gccatgtctc agcttcagcc tgcaggcgga tggatttatt ctccgccagc
     6241 gaatcacgta atttcatggc gcgtccttac ttcacatcct gcgggaaatg cgctttgatc
     6301 acttccagca gtttcgggcc aaagtcggca ggagagagca tgttgcgcac gccaaccacg
     6361 tatttgttgc cggtcacggt gatttcgccc gcaatgtgcg tagaagcgat gatgatatcc
     6421 gcgccgctca actcgctttt gtattcgcca accgcgcagc tatttaccgt gtggtcaatg
     6481 tttgattggg ttaaaaactg gtccactttc atcttcatga tcatggaact gccttgtccg
     6541 ttgccacaca cagccagaat acgtacggtc ataatcaaaa ctccttatta agcagactgt
     6601 tctgccagtt gtttttctgc atcttcttct gcgcgcagtg cgcggccagc gaagaacata
     6661 taagccagtg caattacaat gatgacggcc ataaaggcga taccgatgga gaagaagccc
     6721 tgcatcatcg gcggtgccag aatcgaccag tccgccatgc ccatccaggc gctcataccg
     6781 gtgagtttca ccgcccagac gcagccaaag atttcaatca tccccatcac cagacatatc
     6841 ttcagcgccg cacgccagcc gccgaagtgg ttagcgaaca cgccgatggt ggcgttggag
     6901 aagaacatcg ggataaagcc gggaataatc aggatcgagg aaccgcaggc gaccaggatg
     6961 ccaaccgcaa tcagctgacc gatggtgccc cacataaagc cccaaaccac ggcgttcggc
     7021 gcgaagctat agatagccgc acagtcaatc gccagaaccg caccagggat caggcgctgg
     7081 gagataccgt taaatgcttc agagagttcc gccacaaaca tgcgcacgcc ctgagtgatg
     7141 atgaagatcg ccaccgcgaa ggagaaacca gtttgcagga tgtacaccgt ccagttcact
     7201 ttgcctgcca tcgcctgcac ggtgtcgata ccgaaggaga gtagaatggc accaaagaag
     7261 atggtcatca caatcgccgt ggagacgatg ttgtcgtgga aaatattcag ccagcctggc
     7321 agtttgaggt cttcaacgct ttcctctttt ttgccgagga acggcgcaac tttataggca
     7381 atccatgatg caaactgttg ctggtgaccg atggagaaac cgcagccgtc cgtcacttcc
     7441 tgagtcggct tgtacatcat attggaggta atgccccagt agagcgaaac cagaatcgcc
     7501 gtgcagataa tggttgtcca catggagtag ccgaaaataa acaacgtaac ggcaatcagc
     7561 cccgcctgct ggaacatgat atgaccagtc agcatgatgg tacgaatacc ggtaatgcga
     7621 cgcagcagca cgtaacagat gttcagcgcc agcgctaaca acaccgcgta acctacccag
     7681 ctataggcat cgcccatgcg gtcgatggtt gccatcatcg acgcgtaagt atcggaaatt
     7741 gcgccgttaa tgccgtagac ttcggacatt ttcgccacca ccggtttgaa ggtgctggtg
     7801 aggatgccgg accctgcctg caacaacatg aaaccaatta tggttttaat cgtgccttta
     7861 ataataacgc tgacactttt gcgcagtagg atgtagccca gacaggtcac aatacccagc
     7921 aacaacgggg cattggtcat gacctggtta aaaaacacgg taaagatgtt gtagagacga
     7981 tctcctgaag aagaggtaac cgggtattcc gcacacccgg aatgttgtgc actcactcta
     8041 attttcaaaa gcaatcacaa caagattatt tatgattaaa tgtgacgcga cccgcaaata
     8101 attccatacg gatagagtgg gattcacaca acgaaacaat tatttattta aatttagtta
     8161 aattcattta gttaatttaa ctatacattc cattaaatct ttccacactc aaaatcaaca
     8221 acaacttccc tggcaaaaag tcaaaaaatg gtcattgcct tcctgaaaaa atagtgtcag
     8281 gattaatcaa aaccaatcac atattgattc gaattgaact atcatgaagg taaatggcga
     8341 tgagtaaagt gaaaagtatc acccgagaat cctggatcct gagcactttc ccggagtggg
     8401 gtagctggct gaatgaagaa attgaacaag agcaggtcgc ccctggcaca tttgcgatgt
     8461 ggtggctagg ctgcaccggg atctggttga aatcagaagg tggcaccaac gtttgcgttg
     8521 atttctggtg cggcactggc aaacaaagtc acggtaaccc gttaatgaaa cagggtcacc
     8581 agatgcagcg catggctggc gtgaaaaaac tgcagccaaa cctacgcacc cccccgtttg
     8641 ttcttgatcc gtttgcgatt cgccagatcg acgcggtact ggcgactcac gatcacaacg
     8701 atcatatcga cgttaacgtc gctgctgccg tgatgcagaa ctgtgctgat gacgtaccat
     8761 tcattggacc gaaaacctgc gttgatttgt ggattggctg gggcgtaccg aaagagcgtt
     8821 gcatcgtggt caaaccgggc gatgtggtga aagtgaaaga cattgaaatt catgcgcttg
     8881 atgctttcga ccgtactgca ctgatcaccc tgcctgccga tcaaaaagcg gctggcgtac
     8941 tgccggacgg catggacgat cgcgcggtga actatctgtt caaaacgcct ggcggctccc
     9001 tgtatcacag cggcgactcc cactactcta actattatgc gaagcacggt aacgaacatc
     9061 agatcgacgt ggctttaggt tcatacggcg aaaacccgcg cggtatcacc gacaaaatga
     9121 ccagcgccga tatgctgcgt atgggtgaag ccctgaatgc gaaagtggtt atcccgttcc
     9181 accacgatat ctggtcaaac ttccaggccg ctccgcaaga gatccgcgtg cagtgggaga
     9241 tgaaaaaaga tcgtctgaag tatggcttca agccgtttat ctggcaggtt ggcggcaaat
     9301 ttacctggcc actggataaa gacaacttcg agtaccacta tccgcgcggt ttcgatgatt
     9361 gcttcactat tgaaccggat ctgccgttca aatcattcct gtaatctgtc gtttataccg
     9421 gatagcgtgg agaagttcgc gctatccggc gtagtatttc ctggctattt caaatatcat
     9481 ctaaaaaaat caaattttat cggaatagct catgactgaa gcacaaagac atcaaatcct
     9541 cctggaaatg ctcgcacaat tgggctttgt gaccgttgag aaagtcgttg agcgtctggg
     9601 aatttcgcct gccactgcgc gacgcgatat caataaactt gacgaaagcg gcaaactcaa
     9661 aaaggtgcgc aatggcgcag aagctattac ccaacagcgc ccgcgctgga cgccgatgaa
     9721 tctgcatcag gcgcagaatc acgatgaaaa agtacgtatt gctaaagcgg cctcgcagct
     9781 ggttaatccg ggcgaaagcg tagtcatcaa ctgcggctcc accgcgtttc tgcttgggcg
     9841 ggaaatgtgt ggcaagccag tgcaaatcat cactaattat ctaccgctgg caaattacct
     9901 gatcgatcaa gaacatgaca gcgtgatcat tatgggtgga cagtacaaca aaagtcagtc
     9961 catcacttta agcccgcagg gcagcgaaaa cagtctctat gccgggcact ggatgtttac
    10021 cagcggaaaa gggctgaccg cagaagggtt gtataaaacc gatatgctga cagcaatggc
    10081 agagcagaag atgctgagcg tggtagggaa actggtggta ctggttgata gcagtaagat
    10141 tggcgaacgc gcgggaatgc tttttagccg tgccgatcaa atcgatatgc ttatcaccgg
    10201 caaaaatgct aacccggaaa tcctgcaaca actggaagcg caaggggtca gcattctgcg
    10261 tgtttaaaga tgctggcgga aaaatgtcac ggcagcatct aacgcctcag gcgtaatgcg
    10321 gtgacgcacg cctggctgcc atgaacaggt tagcagttta tcccgtcccg tctcgcttaa
    10381 ggcctgctgc aaacgtagtg attcgtcggc aggcacaacg tcatcgtcga ggccatgcca
    10441 cagcagtaga ggtctgtccc caagttgttc caggtggttt gtcgcttccc actctgccag
    10501 cggcgcgata atgttattga attcattctg ctgtgctgcc gtttcaggta tcagcggtgg
    10561 aaacagtgaa cgggcgagcg atgtaaaata gcccgatccc atcatgctgg cggtacattt
    10621 caccgtgggg tggcgagcgg taattcccag tgccgtcatc gcgcccatcg acgcgccacc
    10681 gactgccaga cggtcatcaa gcagccagtt ttcttcggct attgccgcac gtaaagtagt
    10741 gaattcctgc atactttgta gcaagatttg ccagaattga tttaaccgcc gcgcttcgtc
    10801 gctactaaaa cggctaccgt gatcgggcgc atccggcatg atcacccgca aaccagcctg
    10861 cgccagcgca acggcaaaat agctatacac caggctggat gaagtaaagc cgtgataaaa
    10921 aattacgcac ggtaacgggg tatctttttg cccgacagga taagcatgaa gaacgggaat
    10981 atctgccagc tcgcgtgatt ctatttcaat catctgtctc tcctttttgt ctggtatgac
    11041 atgaagaaat ccttagcaca agtttctgct ggcggtatta gttcataatg ttgagatgtg
    11101 ggttacgctt tcgtcacgtt ttcattcgaa aatcgcgtac caggtaacaa ttcgggaaca
    11161 ttcccccaaa gttaaattaa taaggcacta cactatggtt agcaggaaac gtaatagcgt
    11221 tatttaccgg tttgcctgtt tattattggt gttgatgtta agtgcctgta gcgcactgca
    11281 aggtacgcca cagccagcac cgccagtaac gaaccatccg caagagattc gccgcgacca
    11341 gacgcaaggg ttacagcgaa taggtagcgt aagcacgatg gttcggggtt ctccggatga
    11401 cgcattagca gaaatcagag caaaagctgt cgctgcaaaa gctgattatt acgttgtcgt
    11461 catggtggac gaaaccatcg tgacaggaca gtggtattca caagccattt tgtaccgtaa
    11521 ataaatcaga caacttacat agtcagcttt acattgcttt gcgtccctat gcgtttacct
    11581 gtgcacaata aattaccggc tggaagcctg ggcgtttatt accgcgatgg aatgccctgc
    11641 aacatgtggg gaaacgaaaa atggagctga cgatgaaaca attacttgct tcaccctcgc
    11701 tgcaattagt gacttatcct gcgagcgcca cggcacagtc tgcagaattc gccagtgctg
    11761 actgcgtgac gggcctgaat gaaataggtc agatctcagt tagcaatatt tcaggggatc
    11821 cgcaggacgt ggaacgtatc gtggcgttaa aggccgatga acaaggtgcg tcatggtacc
    11881 gcattattac catgtacgaa gaccagcagc ctgataactg gcgcgtacag gcgatactgt
    11941 atgcatgagt gtcatctaca gcaaatgaac aatgccggat tcggcgcgag cgccttgtcc
    12001 ggcctacaat tttcacatat ttcattgagt taatcgaaac cagcgtcgca tcagtcgtat
    12061 acgcttacac acacactccc cccgtcgccc gcagcaataa atcattctgg atctgctctg
    12121 acaaccgtac gccgccgcgc gtatctaaca tcacctgaca ccacgcctgc gccattggcg
    12181 gagaagcata tttcaacatt tgcgcaccgc agcccagcag gaatagctga tgagtaatct
    12241 ctcgccccag ttcttcagct ggcttacgca gctgctgctg taaacgacga accgcgcgat
    12301 caaaatagcg atcctgccct ttcacttcca caaatgcttc cgacaataag tcgtatacgc
    12361 ccgcttgctt attgagaacg cgcaacacat ccaggcacat aatattgccg gaaccttccc
    12421 aaatactgtt taccggcatc tcccggtaaa gccgcggcag ctcgctctcc tcgcaataac
    12481 caatgccgcc cagcacctcc atcgcttcgg ccacaaacgg catacctctt ttgcagatca
    12541 caaattttgc cgcaggcgta aataaacgcg cccacagggc ttctttggca tcggcacgcc
    12601 ggtcccacgc tcgcgcaaga cgaaacagca acgccgtttg cccttcaagc tgaagtgcca
    12661 tgcgacttaa gacatgacac ataaggggct gttggatcaa tggattacca aaaacatggc
    12721 gttgatgtgc atgataaatc gccagcgaaa atgcacggcg catcatggca tggctaccca
    12781 gggcgcaatc aaaacgcgtc atcccaccca ttttcaggat cagacgaatt ccttcccctt
    12841 cctgccccaa caaccagcca atggcatcct gaaactccac ttcgcaactg gcgttagagc
    12901 gattacccag cttatctttc agccgctcga ggcgaatcgc gttgcgttgc ccatcaggca
    12961 aaaagcgcgg cacaaaaaag caggacaaac cgcccgtagt ctgcgccagc accagatgcg
    13021 catcgctttg cggcaccgag aaaaaccatt tatgccccac cagccgataa gagccatctt
    13081 ccagacgctc tgcacgggtg gtgttgctca tgacatcgga accgccctgc ttttccgtca
    13141 ttcccatgcc aatcaacaaa ccgcgttttt gcccacctgg caataagaga gaatcgtagc
    13201 gatcgctcag cagcggcgtg gtccagtcct gaaacggcgt gggtaacatc tgtaacaaca
    13261 atggcgtggc ggcaaaggtc atcgttattg gacataacga cccagcctca acctgcgcat
    13321 gtaacataaa acgcgccgcg cgcgccacaa atgcgccgga gcgagcgtct tcttcccagg
    13381 caagattgtg cacccgattg gtacataacg cctgcatcag caggtgccag gcggggtgaa
    13441 aacgcacatc gtccagacgg cgtccttgcg catcgtagcg caataattca ggcggattca
    13501 cattcgccag ccgccccagt tcaagagatt cagccgttcc taactgctga ccaatactgg
    13561 ctagaaaatc gctatcccag ccagcacctt cacgcgttac cgcttcacag agcgcgccat
    13621 cagacaggta taagttgctg ttatttaatg gtataggttg attaaaaacg gtgtgagttt
    13681 gccagtgcac tgtgtctccc tccatcaatg gcagtcaccc ttagtatggt cactgccatg
    13741 gattcctgac agaaagagat tgctaaaaca ttcttatcca gcaatgtaat gcggaacgaa
    13801 acgtgaggtg tctttggtga tcagcgtgtt atcttcacgg atccccattc cgcacgcttc
    13861 atcatcgaca atccagctac cgatgagtgt gtagctatcg ccaaatcgcg gcagaggttg
    13921 aaacgcctgg tagatcatcg gttcatcggc gtaatcacca tcagcgtggt caacgacgtt
    13981 attctgaccg tcgaaaatgg tgacgtttcc gccttcgcgt gagtagatcg gtttacgcac
    14041 atagctttcg ccagcggcaa tctgcggttt ttcgccctca aaccaggatg caagaaggtt
    14101 aggatgacca ggaaagaagc gccaaagcag cggcattagc cctttattac tcaagatact
    14161 tttccataac ggctccaccc attgctcgcg acgcttgcgc agcagcggac cgttatcgtc
    14221 acgcatcatc cactccagcg gatacagctt aaatgcacgc tggatgacat tatcatcaag
    14281 atcggtcagt acgccgccga cgcccaaacc gagatcttca atgtagataa accgcgactc
    14341 ctgccctgcc tgctgggcgc agtcctgcaa gtacagcacg gtactcctgt cttcatcggt
    14401 gtcctgacag cagcaaaaat aaaacggttc ccgactgtaa agctcactaa agcgcgaaat
    14461 caggcgttcc tgaatggcgt tgtactccag cagcttcacc ggcgcattgc cacaccaggc
    14521 aaaatccatc cggccataca gcgaaggatc gcgtgcgcgc cagctttcgg cgatcacatc
    14581 ccagtacaac ggcgggatcg ccagttgcgt caggatctct tcgtctttaa ccgcgcgatc
    14641 caccacctca aggcacatct gatgcagttc cgcagtcggt ttttcgatct gctcttcaat
    14701 ctggcgcaga gtaaaacggt aagcccgact ctcgtcccaa tagatttcat tgtcgatgat
    14761 atgaaagtcg aaaccgttgt tagcggcgat ctggtccaga tcccgtcgca caggaacgtt
    14821 gtgtctcagc atgattagcc tccccaatgc ccacgggcgc tggaagaacg accatagccg
    14881 ccgcgcgaaa cggttgacgc ttttttggtg gtaaagccgc ctgaagagta agactctttt
    14941 ttgccagaac cggagcgcca ggagtaatca ccggaagtgt tgagccagac ggggcgggaa
    15001 gcaaatgagg atccgccgct gttatagacg aacggctcat cgcgatcttt acgaataacc
    15061 cggcttaaca aaaatccaga aacgaccggg atccaactct gttcaacatt gtcgtagtag
    15121 caattttcgt acttagactg acaattctgc tgagtcatat tcttcggaac atcggcataa
    15181 aatgccgctt tggcgttgtt ccagccacgc gcgcaaatgt cggcattatt accgtcatca
    15241 atacaatcct gcactgtcga ataaaacgtt ccgtcgccgt cgttatcgac atcgccacta
    15301 tcgccacaac ctttcaatac aaaaaaagcg gcaccgccca ttagcgccaa cgttaagtat
    15361 ttttgtgcgt agcgattgcg acgcggttca aaaggattat tcggtctacc aatgcgactg
    15421 atcgctccgt gaccaatttt actgttattt cttgatttgc gttttctggc catgatcgtc
    15481 cattaccatg tcatacaagc tgcgttaaaa ataccgccag ccagcgcggc ggttcccata
    15541 aacattcctg ctgcggtatt gtgattaata attttttcgc ttaatgcggg catataaagt
    15601 ctgacaccag caaaaacgag taactgaatc accagtgcaa tcccgcccca ggcgaaatag
    15661 tctggaatac tcaccgcatt gattgccgca ctggataagg ggatcacgta acccaacaat
    15721 gtaccgctga atgccagtga caccgcggta ttattgtttt tgattaattg ccattcgttg
    15781 tgcggtgtaa ttttggagta gataaacaga aaaataatca ccatagccac gccaataaaa
    15841 aaataggcac taaaggcaag aagtgaatcc agtatatgca ttgtaaacgt ccttgtaatt
    15901 aaccaataat atgaagtgat gtcagcggga tatcgacacc caacgcgcgc gaaaataacc
    15961 actctggctc gccgagatcg ttaaaagatt cctcaccatt taacagtaaa tattcgtaag
    16021 tatcttcggt tacttgccgc tggtagccca tggtaaaatt atggacctcc catttggcat
    16081 ggttttgatt ttctactttt tccagcatgt agacgggttc gatatttccc ggttcttcgc
    16141 tgttaaaaaa tcgctgccag cgtttttcct gccagtttaa ggtcattgcc cccatcgttt
    16201 tggcgttgat cgcctcgcgc cagtgactct ctttactgat accgtagctc tcttcataga
    16261 caaagagctt gatatcatca atgtcatcaa tatcttcgcc gccggtggta ttgatttgca
    16321 gaaattcatc gcctgaagtg tagtaacgga aaatctggct accgcctccc agatcgatgc
    16381 ggctgacagc ggctaccgta aattcctcac ccggtagcgc aatcagcaat tcatcttcca
    16441 gcaaacgaaa cgctaacgtg tcgagcgtaa agccactatt gagatgaagt cccagcggac
    16501 cgcgagcgat agcaggctta ttatccttgc caaacagacg ctggaaaaaa ccagacatat
    16561 tttatcctta aaatagttgc cagcctttta gcgaggctgg caaaaaaatt actcgccctg
    16621 ttggcgttgc agtcttgcta atacatcctg ggctctactt ttattgctac cgccaattcc
    16681 ggcttccgcc agcttttcgt caaggtcgcg accgtctgcg actttctcca actgtgcggc
    16741 agcatccagg cgagcctgac gttcggcctg acgcgtttgc aggcgtttta aggattctgc
    16801 cgctgtcgaa acgctggaag atgcgccaac ggtagaggtt gttacagcct gttgtgcacg
    16861 ctgcatggct tcagtggctt taacgacttc catttgctgc tcaaactgag cgatacgctg
    16921 cgctgtcgct gtaactgctt tttccacgcc atcacgggag acttccagat tcgacaacac
    16981 ttgctcttca gcggtaatga gattctcaag gcgcgcgatt tcttcagcaa cttcgttaat
    17041 caacgacgga ttaacgttct tgcttaacgc ttccagcgca cgggcttcca gactggcttt
    17101 gcgctcacgt aaatctttca gcttatcgtg acttaatttc acccgcgcca gcagatcaac
    17161 gcgagatttt ccggctttat cgagttcagc tttagcgtca cgaatatgct gttccagcat
    17221 gcgcacgccc tgggtttctt caatggattc ttccgcctgg gagataaacg atttccccag
    17281 cgtaaataaa ctttttaaaa ttcccataaa tacccgtcct tgtaattagt gtgaatattc
    17341 ttctgtaatt tcagccagat ccaatgcgtt atctaccagc taggttatct caagcaggat
    17401 atcttcaaga gaagatttaa gcgataacgc cccgaaaaca atgtaatact cttcctgttg
    17461 cacgctggag attcctaccg atgacaacgg catcatcttc tga
//
LOCUS       DADMJB010000082        17495 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.082, whole genome shotgun sequence.
ACCESSION   DADMJB010000082 DADMJB010000000
VERSION     DADMJB010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17495)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17495)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17495
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.082"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..642)
                     /locus_tag="JN078_002412"
     CDS             complement(<1..642)
                     /locus_tag="JN078_002412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000055794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HAY9041587.1"
                     /translation="MSLNFTVIVWLRLSIGGVYELAFCRSSLKSKKYFIILLALAAIA
                     GLGTHAAWSSNGLPRIDNKTLARLAQQHPVVVLFRHAERCDRSTNQCLSDKTGITVKG
                     TQDARELGNAFSADIPDFDLYSSNTVRTIQSATWFSAGKKLTVDKRLLQCGNEIYSAI
                     KDLQSKAPDKNIVIFTHNHCLTYIAKNKRDATFKPDYLDGLVMHVEKGKVYLDG"
     gene            893..2032
                     /gene="arnB"
                     /locus_tag="JN078_002413"
     CDS             893..2032
                     /gene="arnB"
                     /locus_tag="JN078_002413"
                     /EC_number="2.6.1.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_024188371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4-deoxy-L-arabinose
                     aminotransferase"
                     /protein_id="HAY9041588.1"
                     /translation="MSEFLPFSRPAMGVEELAAVKEVLESGWITTGPKNQALEQAFCQ
                     LTGNQHAIAVSSATAGMHITLMALEIGKGDEVITPSLTWVSTLNMISLLGATPVMVDV
                     DRDTLMVTPEAIESAITPRTKAIIPVHYAGAPADIDAIRAIGERYGIAVIEDAAHAVG
                     TYYKGRHIGAKGTAIFSFHAIKNITCAEGGLIVTDNENLARQLRMLKFHGLGVDAYDR
                     QTWGRAPQAEVLTPGYKYNLTDINAAIALTQLAKLEHLNTRRREIAQQYQQALAALPF
                     QPLSLPAWPHVHAWHLFIIRVDEQRCGISRDALMEALKERGIGTGLHFRAAHTQKYYR
                     ERFPTLSLPNTEWNSERICSLPLFPDMTTADADRVITALQQLAGQ"
     gene            2036..3004
                     /gene="arnC"
                     /locus_tag="JN078_002414"
     CDS             2036..3004
                     /gene="arnC"
                     /locus_tag="JN078_002414"
                     /EC_number="2.4.2.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-phosphate
                     4-deoxy-4-formamido-L-arabinose transferase"
                     /protein_id="HAY9041589.1"
                     /translation="MFEIHPVKKVSVVIPVYNEQESLPELIRRTTTACESLGKEYEIL
                     LIDDGSSDNSAHMLVEASQAENSHIVSILLNRNYGQHSAIMAGFSHVTGDLIITLDAD
                     LQNPPEEIPRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYG
                     CMLRAYRRHIVDAMLHCHERSTFIPILANIFARRAIEIPVHHAEREFGESKYSFMRLI
                     NLMYDLVTCLTTTPLRMLSLLGSIIAIGGFSIAVLLVILRLTFGPQWAAEGVFMLFAV
                     LFTFIGAQFIGMGLLGEYIGRIYTDVRARPRYFVQQVIRPSSKENE"
     gene            3004..4986
                     /gene="arnA"
                     /locus_tag="JN078_002415"
     CDS             3004..4986
                     /gene="arnA"
                     /locus_tag="JN078_002415"
                     /EC_number="1.1.1.305"
                     /EC_number="2.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-4-amino-4-deoxy-L-arabinose
                     formyltransferase/UDP-glucuronic acid oxidase ArnA"
                     /protein_id="HAY9041590.1"
                     /translation="MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGS
                     VAHLAAERGIPVYAPDNVNHPLWVERIAQLSPEVIFSFYYRHLICDEILQLAPAGAFN
                     LHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRVAIAPDDIAIT
                     LHHKLCHATRQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLH
                     NMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISIAPLLIACGDGALEI
                     VTGQAGDGITMQGSQLAQTLGLVQGSRLNSQPACTARRRTRVLILGVNGFIGNHLTER
                     LLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI
                     ATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSN
                     LIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGS
                     SRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIG
                     NPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIR
                     NAHRCLDWEPKIDMQETIDETLDFFLRTVDLTDKPS"
     gene            4983..5873
                     /locus_tag="JN078_002416"
     CDS             4983..5873
                     /locus_tag="JN078_002416"
                     /EC_number="3.5.1.n3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-deoxy-4-formamido-L-arabinose-
                     phosphoundecaprenol deformylase"
                     /protein_id="HAY9041591.1"
                     /translation="MTKVGLRIDVDTFRGTREGVPRLLEILSKHNIQASIFFSVGPDN
                     MGRHLWRLVKPQFLWKMLRSNAASLYGWDILLAGTAWPGKEIGHANADIIREAAKHHE
                     VGLHAWDHHAWQARSGNWDRQTMIDDIARGLRTLEEIIGQPVTCSAAAGWRADQKVIE
                     AKEAFHLRYNSDCRGAMPFRPLLESGNPGTAQIPVTLPTWDEVIGRDVKTEDFNGWLL
                     NRILRDKGTPVYTIHAEVEGCAYQHNFVDLLKRAAQEGVTFCPLSELLSETLPLGQVV
                     RGNIAGREGWLGCQQIAGSR"
     gene            5873..7525
                     /gene="arnT"
                     /locus_tag="JN078_002417"
     CDS             5873..7525
                     /gene="arnT"
                     /locus_tag="JN078_002417"
                     /EC_number="2.4.2.43"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A)
                     4-amino-4-deoxy-L-arabinosyltransferase"
                     /protein_id="HAY9041592.1"
                     /translation="MKSVRYLIGLFAFIACYYLLPISTRLLWQPDETRYAEISREMLA
                     SGDWIVPHLLGLRYFEKPIAGYWINSIGQWLFGANNFGVRAGVIFATLLTAALVTWFT
                     LRLWRDKRLALLATVIYLSLFIVYAIGTYAVLDPFIAFWLVAGMCSFWLAMQAQTWKG
                     KSAGFLLLGITCGMGVMTKGFLALAVPVLSVLPWVATQKRWKDLFIYGWLAVISCVLT
                     VLPWGLAIAQREPDFWHYFFWVEHIQRFALDDAQHRAPFWYYVPVIIAGSLPWLGLLP
                     GALYTGWKNRKHSATVYLLSWTIMPLLFFSVAKGKLPTYILSCFASLAMLMAHYALLA
                     AKNNPLALRINGWINIAFGVTGIIATFVVSPWGPMNTPVWQTFESYKVFCAWSIFSLW
                     AFFGWYTLTNVEKTWSFAALCPLGLALLVGFSIPDRVMEGKHPQFFVEMTQESLQPSR
                     YILTDSVGVAAGLAWSLQRDDIIMYRQTGELKYGLNYPDAKGRFVSGDEFANWLNQHR
                     QEGIITLVLSVDRDEDINSLAIPPADAIDRQERLVLIQYRPK"
     gene            7522..7857
                     /gene="arnE"
                     /locus_tag="JN078_002418"
     CDS             7522..7857
                     /gene="arnE"
                     /locus_tag="JN078_002418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxy-L-arabinose-phosphoundecaprenol
                     flippase subunit ArnE"
                     /protein_id="HAY9041593.1"
                     /translation="MIWLTLVFASLLSVAGQLCQKQATCFVAINKRRKHIVLWLGLAL
                     ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIG
                     GIVILGSTV"
     gene            7857..8243
                     /gene="arnF"
                     /locus_tag="JN078_002419"
     CDS             7857..8243
                     /gene="arnF"
                     /locus_tag="JN078_002419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311173.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxy-L-arabinose-phosphoundecaprenol
                     flippase subunit ArnF"
                     /protein_id="HAY9041594.1"
                     /translation="MGLIWGLFSVIIASVAQLSLGFAASHLPPMTHLWDFIAALLAFG
                     LDARILLLGLLGYLLSVFCWYKTLHKLALSKAYALLSMSYVLVWIASMVLPGWEGTFS
                     LKALLGVACIMSGLMLIFLPTTKQRY"
     gene            complement(8237..8503)
                     /gene="pmrD"
                     /locus_tag="JN078_002420"
     CDS             complement(8237..8503)
                     /gene="pmrD"
                     /locus_tag="JN078_002420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416762.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal transduction protein PmrD"
                     /protein_id="HAY9041595.1"
                     /translation="MEWLVKKSCCNKQDNRHVLMLCDAGGAIKMIAEVKSDFAVKVGD
                     LLSPLQNALYCINREKLHTVKVLSASSYSPDEWERQCTAAGKTQ"
     gene            complement(8613..9968)
                     /gene="menE"
                     /locus_tag="JN078_002421"
     CDS             complement(8613..9968)
                     /gene="menE"
                     /locus_tag="JN078_002421"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HAY9041596.1"
                     /translation="MIFSDWPWRHWRQVRGEAIALRLNDEQLNWRELCARVDELATGF
                     AAQGVVEGSGVMLRAWNTPQTLLAWLALLQCGARVLPVNPQLPQPLLEELLPNLTLQY
                     ALVLEGENTFPALTSLHIQMVEGTHSALWQPTRLCSMTLTSGSTGLPKAAVHTYQAHL
                     ASAQGVLSLIPFGDHDDWLLSLPLFHVSGQGIMWRWLYAGARMTVRDKQPLEQMLAGC
                     THASLVPTQLWRLLVNRSSVSLKAVLLGGAAIPVELTEQAREQGIRCFCGYGLTEFAS
                     TVCAKEADGLADVGSPLPGREVKIVNNEVWLRAASMAEGYWRNGQLVSLVNDEGWYAT
                     RDRGEMHNGKLTIVGRLDNLLFSGGEGIQPEEVERVIAAHPAVLQVFIVPVADKEFGH
                     RPVAVVEYDQQTVDLGEWVKDKLARFQQPVRWLTLPPELKNGGIKISRQALKEWVQRQ
                     Q"
     gene            complement(9965..10927)
                     /gene="menC"
                     /locus_tag="JN078_002422"
     CDS             complement(9965..10927)
                     /gene="menC"
                     /locus_tag="JN078_002422"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HAY9041597.1"
                     /translation="MRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLREGEREGWGE
                     ISPLPGFSQETWEEAQSVLLAWVNNWLAGDCELLQMPSIAFGVSCALAELADTLPQAA
                     NYRAAPLCNGDPDDLILKLADMPGEKVAKVKVGLYEAVRDGMVVNLLLEAIPDLHLRL
                     DANRAWTPLKGQQFAKYVNPDYRHRIAFLEEPCKTRDDSRAFARETGIAIAWDESLRE
                     PDFAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALRLTAVISSSIESSLGLTQLAR
                     IAAWLTPDTIPGLDTLDLMQAQQVRRWPGSTLPVVEVDALERLL"
     gene            complement(10927..11784)
                     /gene="menB"
                     /locus_tag="JN078_002423"
     CDS             complement(10927..11784)
                     /gene="menB"
                     /locus_tag="JN078_002423"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001641973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HAY9041598.1"
                     /translation="MIYPDEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQV
                     RNAFRPLTVKEMIQALADARYDDNVGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSG
                     VHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVG
                     SFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWC
                     REMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQP
                     DFSKFKRNP"
     gene            complement(11799..12557)
                     /gene="menH"
                     /locus_tag="JN078_002424"
     CDS             complement(11799..12557)
                     /gene="menH"
                     /locus_tag="JN078_002424"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HAY9041599.1"
                     /translation="MILHAQAKHGKPGLPWLVFLHGFSGDCHEWQEVGEAFADYSRLY
                     VDLPGHGGSAAISVDGFDDVTDLLRKTLVSYNILDFWLEGYSLGGRVAMMAACQGLAG
                     LCGVIVEGGHPGLQNAEQRAERQRSDRQWAQRFRTEPLTAVFADWYQQPVFASLNDDQ
                     RRELVALRSNNNGATLAAMLEATSLAVQPDLRANLSARTFAFYYLCGERDSKFRALAA
                     ELAADCHVIPRAGHNAHRENPAGVIASLAQILRF"
     gene            complement(12554..14224)
                     /gene="menD"
                     /locus_tag="JN078_002425"
     CDS             complement(12554..14224)
                     /gene="menD"
                     /locus_tag="JN078_002425"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HAY9041600.1"
                     /translation="MSVSAFNRRWAAVILEALTRHGVRHICIAPGSRSTPLTLAAAEN
                     SAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLIL
                     LTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLH
                     AGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPSLESEKQRDWFFWR
                     QKRGVVVAGRMSAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSEL
                     QQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWL
                     ELHPAEKRQPWCVEIPRLAEQAMQAVIARRDAFGEAQLAHRISDYLPEQGQLFVGNSL
                     VVRLIDALSQLPAGYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLN
                     ALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKY
                     HRPQNWQELETAFADAWRTPTTTVIEMVVNDTDGAQTLQQLLAQVSHL"
     gene            complement(14313..15608)
                     /gene="menF"
                     /locus_tag="JN078_002426"
     CDS             complement(14313..15608)
                     /gene="menF"
                     /locus_tag="JN078_002426"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416768.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase MenF"
                     /protein_id="HAY9041601.1"
                     /translation="MQSLTTALENLLRHLSQEIPATPGIRVIDIPFPLKDAFDALSWL
                     ASQQTYPQFYWQQRNGDEEAAVLGAITRFTSLDQAQRFLRQHPEHADLRIWGLNAFDP
                     SQGNLLLPRLEWRRCGGKATLRLTLFSESSLQHDAIQAKEFIATLVSIKPLPGLHLTT
                     TREQHWPDKTGWTQLIELATKTIAEGELDKVVLARATDLHFASPVNAAAMMAASRRLN
                     LNCYHFYMAFDGENAFLGSSPERLWRRRDKALRTEALAGTVANHPDDKQAQQLEEWLM
                     ADDKNQRENMLVVEDICQRLQADTQTLDVLPPQVLRLRKVQHLRRCIWTSLNKADDVI
                     CLHQLQPTAAVAGLPRDLARQFIARHEPFTREWYAGSAGYLSLQQSEFCVSLRSAKIS
                     GNVVRLYAGAGIVRGSDPEQEWQEIDNKAAGLRTLLQME"
     gene            complement(15687..15992)
                     /gene="elaB"
                     /locus_tag="JN078_002427"
     CDS             complement(15687..15992)
                     /gene="elaB"
                     /locus_tag="JN078_002427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein ElaB"
                     /protein_id="HAY9041602.1"
                     /translation="MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAE
                     KALDDVKKRVSQVSDSYYYRAKQAVYRADDYVHEKPWQGIGVGAAVGLVLGLLLARR"
     gene            complement(16047..16508)
                     /locus_tag="JN078_002428"
     CDS             complement(16047..16508)
                     /locus_tag="JN078_002428"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAY9041603.1"
                     /translation="MIEWQDLHHSELSVSQLYALLQLRCAVFVVEQNCPYQDIDGDDL
                     TGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLDT
                     CTHHWPDKPVYLGAQAHLQNFYQSFGFIPVTEVYEEDGIPHIGMAREVIQA"
     gene            16573..17490
                     /gene="rbn"
                     /locus_tag="JN078_002429"
     CDS             16573..17490
                     /gene="rbn"
                     /locus_tag="JN078_002429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease BN"
                     /protein_id="HAY9041604.1"
                     /translation="MELIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQ
                     HQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVE
                     TALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALN
                     AQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDA
                     ALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYD
                     DKGCQHLLRECRSIFPATELANDFTVFNV"
BASE COUNT         4113 a         4696 c         4438 g         4248 t
ORIGIN      
        1 cccatccaga taaactttgc ctttttccac atgcatgact aaaccatcca gataatcagg
       61 tttaaatgtc gcatcacgct tatttttagc aatatatgtc aggcaatgat tatgggtgaa
      121 aataacgata tttttatcag gcgctttgct ttgtaagtcc ttaattgcac tataaatctc
      181 attaccgcac tgaagaagtc gtttatctac cgtcagcttt ttacccgcgg aaaaccaggt
      241 cgccgactga atggtccgga cggtattact ggaataaaga tcgaaatcag ggatgtcagc
      301 gctaaaagcg ttgcccagtt cacgggcatc ctgggtacct ttaaccgtaa tacctgtttt
      361 atctgacaag cattgattgg ttgaacgatc gcaacgttca gcatggcgaa acaaaacgac
      421 aaccgggtgc tgctgtgcca gtctggccaa tgttttattg tcgatacgtg gcaaaccatt
      481 gctactccag gcggcatgag tacccagtcc ggcaattgca gcgagcgcca gtaaaatgat
      541 gaaatatttt tttgacttca atgatgagcg gcaaaaagct aactcgtaaa ctccacctat
      601 agacaagcgc aaccagacaa ttaccgtgaa attgagcgac atttctggcg ataattagca
      661 gttggtgtaa tattaaaaat cctacgatgt cggcaaaatg cctcaaaatt ttgccaaatg
      721 caaagcctaa ataagaaaaa atataaaaat ttcaatattt acgtctaata ttagtttctt
      781 aaggttaagt taatattcta tccttaaaat ttcgttccaa atggcaaaat atacacaaca
      841 ctctttatag caaatataag tggacaggta ttcaatggcg gaaggaaaag caatgtcaga
      901 atttttgcct ttttcgcgac cagcaatggg cgtggaggaa ctcgctgcag ttaaagaagt
      961 tctcgaatcc ggttggatca caaccggtcc gaagaatcag gcgcttgagc aagccttttg
     1021 ccagttgacg ggaaatcagc atgccatcgc ggtcagttca gccaccgccg gaatgcatat
     1081 cacgctaatg gcgttggaaa ttggcaaggg cgatgaagtg attacgcctt ccctgacctg
     1141 ggtttcaacc ctcaatatga tttccttgtt gggtgcaacg ccggtaatgg tggatgtcga
     1201 ccgcgatacg ctgatggtca cgcctgaagc gatcgagtca gccattacgc cacgcactaa
     1261 agccatcatt ccggtgcatt atgccggtgc gccagcagat attgacgcca ttcgcgccat
     1321 tggcgaacgt tacggcatcg cagttatcga agatgctgcc catgccgtcg gtacgtatta
     1381 caaagggcga catattggcg caaaaggtac cgctattttt tcatttcatg ccattaaaaa
     1441 tattacctgt gcggaaggtg gcctgattgt aactgataat gaaaaccttg cccgccagct
     1501 acggatgctg aaatttcacg gcctgggtgt cgatgcctat gacagacaaa cctggggccg
     1561 agcaccgcag gctgaagtct taacaccggg ctataagtac aatctgaccg atattaacgc
     1621 cgcaattgcc ctgacacagt tagcaaaatt agagcacctc aacacccgtc ggcgcgaaat
     1681 tgcccagcaa tatcagcaag cactggctgc tctccccttt cagccattaa gccttcccgc
     1741 ctggccgcac gttcacgcct ggcatctgtt tattattcgt gtcgatgaac aacgttgtgg
     1801 tatcagtcgc gatgcgttga tggaagcgtt aaaagaaaga ggcattggta ccgggttaca
     1861 tttccgcgcc gctcacacac aaaaatatta tcgcgagcgt tttcccacgc tgtcgttacc
     1921 gaataccgaa tggaatagcg aacgcatctg ttctttgccg ctgttcccgg atatgactac
     1981 cgccgatgcc gaccgtgtca tcacagccct tcagcaactc gcaggacaat aagccatgtt
     2041 tgaaatccac cctgttaaga aagtctcggt ggttattccc gtttataacg agcaggaaag
     2101 cttaccggaa ttaatcaggc gcaccaccac agcctgtgaa tcgttgggga aagagtatga
     2161 gatcctgctg attgatgacg gcagtagcga taattccgcg catatgctgg tcgaagcctc
     2221 acaagcggag aacagccata ttgtgtctat tttgcttaac cgcaattacg ggcaacattc
     2281 agcgattatg gcgggattca gtcacgttac tggcgactta attattaccc ttgatgccga
     2341 tctccagaat ccgccagaag aaatcccccg cctagtggca aaagccgatg aaggttacga
     2401 cgtggtaggg actgtacgcc agaaccgcca ggacagctgg tttcgtaaaa cagcttcgaa
     2461 gatgattaac cggcttattc agcgcaccac cggcaaagcg atgggtgact acggttgtat
     2521 gctgcgcgcc tatcgccgtc atattgtcga tgcgatgttg cactgccatg aacgtagcac
     2581 ctttatcccg attctggcga atatcttcgc ccgccgtgcc attgaaattc cagtacatca
     2641 tgccgagcgt gagtttggtg aatccaaata cagttttatg cgcctgatta atttgatgta
     2701 cgacctggtg acctgcctta ccacaacgcc gctacgtatg ctgagtctgc tcggcagcat
     2761 tattgcgatt ggaggtttta gcattgcggt gctgctggtg attttacgcc tgaccttcgg
     2821 accacaatgg gcggcagaag gcgtctttat gctatttgcc gtgctgttta cttttattgg
     2881 cgctcagttt atcggcatgg gattactcgg tgaatatatc ggcaggatct acaccgatgt
     2941 ccgcgcccgc ccccgctatt ttgttcagca agttatccgt ccatccagca aggaaaatga
     3001 ataatgaaaa ccgtcgtttt tgcctaccac gatatgggat gcctcggtat tgaagctctg
     3061 ctggctgccg gttacgaaat tagcgccatt tttacccata ccgataatcc cggtgaaaaa
     3121 gccttttatg gttcggtggc tcatctggcg gcggaaagag gcattccggt ttatgcgccg
     3181 gataacgtta atcatccgct gtgggtggaa cgcattgccc aactgtcacc agaggtgatt
     3241 ttctcttttt attatcgcca tcttatttgc gacgagattt tgcagctcgc tcccgcaggt
     3301 gcatttaatc tgcacggttc gctgttacca aaatatcgtg gtcgcgcgcc gctgaactgg
     3361 gtgctggtga acggtgaaac ggaaacgggc gttacattgc accgaatggt aaaacgtgcc
     3421 gatgctgggg ccattgtggc gcaactgcgc gttgccattg cgccagacga tatcgctatt
     3481 acgctgcatc ataaattgtg ccatgccacg cgccagctac tggaacagac attacccgcc
     3541 attaaacacg gtaatattct ggaaatcgcc cagcgcgaaa acgaagccac ctgttttggt
     3601 cgcagaacgc cggatgacag tttccttgaa tggcataaac cggcatccgt actgcacaac
     3661 atggtacgtg ccgttgccga tccgtggccg ggtgccttca gctatgttgg caatcagaaa
     3721 ttcaccgtct ggtcgtcgcg tgttcatcct catgccagca aagcacagcc ggggagcgtg
     3781 atttctattg caccgctgtt gattgcctgt ggcgatggcg cgctggaaat cgtcaccgga
     3841 caggcgggcg acggcattac tatgcagggc tcgcaattag cgcagacgct gggcctggtg
     3901 caaggttcac gcttgaatag ccagcctgcc tgcaccgccc gacgccgtac ccgggtactc
     3961 atcctcgggg tgaatggctt tattggcaac catctgacag aacgcctgct gcgcgaagat
     4021 cattatgaag tttacggtct ggatattggc agcgatgcga taagccgttt tctgaatcat
     4081 ccgcattttc actttgttga aggcgatatc agtattcatt ccgaatggat tgagtatcat
     4141 gtcaaaaaat gtgatgtcgt cttgccgctg gtggcgatag ccacgccgat tgaatatacc
     4201 cgcaacccgc tgcgcgtatt tgaactcgat tttgaagaga atctgcgcat tatccgctac
     4261 tgcgtgaagt accgtaagcg aatcatcttc ccgtcaactt cagaagttta tgggatgtgt
     4321 agcgataaat acttcgatga ggaccattct aatttaatcg tcggcccggt gaataaacca
     4381 cgctggattt attcggtatc aaaacaatta cttgatcggg tgatctgggc ctatggcgaa
     4441 aaagagggtt tacagttcac cctcttccgc ccgtttaact ggatgggacc acgactggat
     4501 aaccttaatg cggcacgaat cggcagctcc cgcgctatta cgcaactcat tctcaatctg
     4561 gtagaaggtt caccgattaa gctgattgat ggcggaaaac aaaaacgctg ctttactgat
     4621 attcgcgatg gtatcgaggc gttataccgc attatcgaaa atgcgggaaa tcgctgcgac
     4681 ggtgaaatta tcaacattgg caatcctgag aacgaagcga gcattgagga actgggcgag
     4741 atgctgctgg cgagcttcga aaaacatccg ctgcgccatc atttcccacc gtttgcgggc
     4801 tttcgcgttg tcgaaagtag cagctactac ggcaaaggat atcaggacgt agagcatcgt
     4861 aaaccgagca tccgcaatgc ccaccgctgc ctggactggg agccgaaaat tgatatgcag
     4921 gaaaccatcg acgaaacgct ggatttcttc ctgcgcaccg ttgatcttac ggataaacca
     4981 tcatgaccaa agtaggctta cgcattgatg tcgatacctt tcgtggcacc cgtgaaggcg
     5041 tgccgcgtct gctggaaatc ttgagtaagc ataatattca ggccagcatt tttttcagcg
     5101 tcggcccgga caatatgggc cgccatctct ggcgactggt gaagccacag tttttgtgga
     5161 agatgctgcg ctcaaacgcg gcatcgcttt atggctggga tattttactg gcaggtacgg
     5221 cctggccagg taaagagatt ggtcatgcca atgccgatat cattcgtgaa gcggctaaac
     5281 atcacgaagt cggcctgcac gcctgggatc accatgcctg gcaagcccgt agcggtaact
     5341 gggatcggca aacaatgatc gacgatattg cacgcggtct tcgcactctg gaagagatta
     5401 tcggtcaacc ggtaacctgt tctgccgctg cgggctggcg tgccgaccag aaggtgatcg
     5461 aagcaaaaga agcgttccat ttgcgctaca acagcgattg tcgtggggcc atgccgttcc
     5521 gtccattgct cgaatcagga aaccctggca ctgcgcaaat tccggtgacc ttacccacct
     5581 gggatgaagt gattggtcgg gatgtgaaaa cagaagattt taacggttgg ttactcaacc
     5641 gcatcctgcg agataaaggc acgccggttt ataccattca tgcagaagtt gaaggctgcg
     5701 cttatcagca taattttgtg gatctcctca aacgcgcagc tcaggaaggc gtgacatttt
     5761 gccctttaag cgaactgtta tcagagacgt tgccgctcgg acaagttgtt cgcggaaata
     5821 ttgccggacg tgaaggctgg ctgggttgcc aacaaattgc gggtagtcgc tgatgaaatc
     5881 ggtacgttac cttatcggcc tcttcgcgtt tattgcctgc tattacctgt taccgatcag
     5941 cacgcgtctg ctctggcaac ccgatgaaac gcgttatgcg gaaatcagtc gagaaatgct
     6001 ggcatccggc gactggattg tgccccatct gttagggcta cgttatttcg aaaaacccat
     6061 tgccggatac tggattaaca gcattgggca atggctattt ggcgcgaata actttggtgt
     6121 gcgggcaggc gttatctttg cgaccctgtt aactgccgcg ctggtgacct ggtttactct
     6181 gcgcttatgg cgcgataaac gtctggctct actcgccaca gtaatttatc tctcattgtt
     6241 tattgtctat gccatcggca cttatgccgt gctcgatccg tttattgcat tctggctggt
     6301 ggcgggaatg tgcagcttct ggctggcaat gcaggcacag acgtggaaag gcaaaagcgc
     6361 aggattttta ctgctgggaa tcacctgcgg catgggggtg atgaccaaag gttttctcgc
     6421 ccttgccgtg ccggtattaa gcgtgctgcc atgggtagcg acgcaaaaac gctggaaaga
     6481 tctctttatt tacggctggc tggcggttat cagttgcgta ctgacggttc tcccttgggg
     6541 actggcgata gcgcagcggg agcctgactt ctggcactat tttttctggg ttgagcatat
     6601 tcaacgcttt gcactggatg atgcccaaca tagagctccg ttctggtact acgtgccggt
     6661 catcattgcc ggtagcctgc cgtggctggg attactcccc ggtgcactgt acacaggctg
     6721 gaaaaaccgc aagcattccg caaccgtcta tttgttgagc tggacgataa tgccgctgct
     6781 gtttttctcc gtcgctaaag gtaaattgcc cacctatatt ctttcctgct ttgcatctct
     6841 ggcaatgctg atggcgcatt acgctttgct ggcagcaaaa aataatcctc tggcgctgcg
     6901 gattaatggc tggattaaca tcgcttttgg cgtcactggc attattgcca catttgtggt
     6961 ctccccgtgg ggaccaatga acacgccggt gtggcaaacc ttcgagagct ataaagtctt
     7021 ttgtgcctgg tcgatttttt cgctatgggc atttttcggc tggtacacct taacaaacgt
     7081 cgaaaagacc tggtctttcg ccgcgctttg cccgctgggg ctggcgttgc tggtaggatt
     7141 ttcaattcct gacagagtca tggaaggaaa acatccgcaa ttttttgtcg agatgacaca
     7201 agaatcactt caaccaagcc gctatattct tactgatagc gtcggtgttg ccgcaggtct
     7261 ggcatggagc ctgcaacgcg atgacatcat catgtatcgc cagacaggtg agttgaaata
     7321 cggccttaat tatccggatg cgaaagggag atttgtcagc ggtgatgagt tcgcaaactg
     7381 gcttaatcaa catcgtcagg aggggattat tacactcgtg ctttcggttg accgcgatga
     7441 agatatcaac agtctcgcca ttccgcccgc agatgccatc gatcgtcagg agcgtctggt
     7501 gctgattcag tatcgtccca aatgatctgg ctaacattag tctttgccag cttgcttagc
     7561 gttgccgggc agttgtgtca gaaacaggca acctgctttg tggcgataaa caaacggcgc
     7621 aaacatatcg tgctgtggct gggactggcg ctggcttgtc ttggtcttgc catggtgctc
     7681 tggctgctgg tcttgcagaa cgtaccggta ggcattgcct acccgatgtt aagtctgaat
     7741 tttgtctggg tgacgctggc tgcagtaaaa ctgtggcacg aaccggtatc gccgcgtcac
     7801 tggtgtgggg tggcgttcat tattggtggc attgtgatcc tcgggagtac ggtgtaatgg
     7861 gcctgatatg gggattattc agcgtcatta ttgcctcagt tgcgcaatta agcctgggtt
     7921 ttgcggcaag tcatctgccg ccgatgacgc acttatggga ttttatcgcg gctctgttag
     7981 cttttggcct ggatgcccgg atactgttac tcgggctgct gggttatctg ctttccgttt
     8041 tttgttggta taaaacgcta cataaacttg cgctaagcaa agcctatgcc ttgctcagta
     8101 tgagttatgt gctggtatgg attgcttcaa tggtacttcc cggctgggaa gggacttttt
     8161 cgctgaaagc actactggga gtagcctgta ttatgagcgg gttgatgctg attttcctgc
     8221 ccacgacaaa acaacgttac tgagttttcc ctgccgctgt acactgccgt tcccactcat
     8281 cggggctata actgcttgcc gagaggactt tcaccgtatg cagcttttca cgattaatac
     8341 aataaagcgc attctgcaaa ggcgagagta aatcccccac tttcacggcg aagtcactct
     8401 tcacttcggc gatcattttt atcgcgccgc cagcatcgca gagcataagt acatgtctgt
     8461 tatcttgttt attgcagcac gattttttga ccagccattc cattgcatta tcctgtttgc
     8521 taagagtttt cacatcaatt tacagattaa cagataaact ctttatcaac ggcaatggaa
     8581 tggcagaaat gagaagtgaa acggagggtt aattattgct gacgttgcac ccactctttt
     8641 agcgcctgac gtgaaatttt aataccgccg tttttcagct ccggcggtaa agtcagccag
     8701 cgcaccggtt gttgaaaacg agccagctta tctttcaccc attcgccaag atcaacggtt
     8761 tgctggtcat actccaccac cgctaccggc cgatgaccaa actccttgtc ggcaacggga
     8821 acgataaaca cctgcaaaac cgcaggatgt gcagcaataa cacgctcgac ttcttccggc
     8881 tgaataccct caccgccact gaataacaga ttgtctaaac gtccgacaat ggtcagcttg
     8941 ccattatgca tctcaccgcg atcgcgcgta gcgtaccagc cttcgtcatt aaccagtgaa
     9001 accagttgcc cgttacgcca gtaaccttct gccatactgg cagcccgcag ccacacttca
     9061 ttattaacga ttttcacttc ccgacccggc agcggcgaac caacgtctgc caggccgtcg
     9121 gcttctttcg cacataccgt ggaggcaaac tcggtcagac catagccgca aaagcaacga
     9181 atcccctgct cgcgcgcctg ttccgtcaac tcgaccggga tagccgcgcc gccaagtaac
     9241 accgctttca gggaaacgga actgcggtta accagcaaac gccagagttg tgttggcacc
     9301 agtgaagcgt gagtacagcc tgccagcatt tgctccaatg gctgtttatc acgcaccgtc
     9361 atccgcgcac cagcgtataa ccagcgccac ataattccct gaccggagac gtgaaacagc
     9421 ggtaaagaga gcaaccagtc atcgtgatcg ccaaacggaa tcagcgataa cacaccttgc
     9481 gcactggcaa gatgggcctg ataagtatgg acagcggctt tcggtaaacc ggtggagccg
     9541 gaggtcaatg tcattgaaca aagacgtgtt ggttgccaca gagctgaatg tgtgccttca
     9601 accatctgaa tatgcagtga agttaacgcc gggaaagtat tttctccttc cagcaccagc
     9661 gcatattgca gtgtaagatt tggcagtaat tcctcaagca acggttgcgg aagctgtgga
     9721 tttacgggca gcacccgcgc cccgcattgc agtaacgcca gccaggcgag cagcgtttgc
     9781 ggcgtattcc acgcccgcaa catcacgccg ctgccctcaa ccacaccctg cgccgcaaag
     9841 cccgtagcta actcatcgac gcgagcacaa agctcgcgcc agttgagttg ctcgtcatta
     9901 agacgtaagg cgatggcttc tccccgcact tgccgccagt gacgccacgg ccagtcagag
     9961 aagatcataa caaccgctcc agtgcatcaa cttccacgac aggcagcgtg ctacccggcc
    10021 agcgacgtac ctgctgcgcc tgcatcagat ccagcgtgtc cagccctgga atggtgtccg
    10081 gcgttaacca ggcggcaatc cgcgccagtt gcgttaagcc taagctcgac tcaatagaag
    10141 aactgatcac cgccgtcagc ctcaacgcgt gcgccgcctg tacctgctcg cgtacttttt
    10201 ccagactgcc cgtgagcgtg ggtttgataa ctaccgcgcg cacgccctct tcagccacaa
    10261 aggcaaaatc cggctcgcgc aggctttcat cccaggcaat ggcaatgccg gtttcacggg
    10321 caaacgctcg cgaatcatcg cgggttttgc acggctcttc gagaaacgcg atgcggtggc
    10381 gataatccgg gttaacatat ttggcaaact gctgaccttt cagcggtgtc caggcgcgat
    10441 ttgcgtcaag acgcaaatgc agatccggaa ttgcctccag caacagatta accaccatgc
    10501 cgtcgcgcac ggcttcgtac aatcccactt tgaccttcgc cactttctcg cctggcatat
    10561 cagcaagttt gaggatcaga tcgtcaggat cgccattaca cagtggtgcc gcacggtaat
    10621 tggccgcctg cgggagcgta tctgccagct ccgccaatgc acagcttacg ccaaaggcaa
    10681 tggaaggcat ctgcagtagc tcgcaatcgc ctgccagcca gttatttacc caggcaagca
    10741 gcacgctttg cgcctcttcc caggtttcct ggctgaagcc cggcagtggg gagatctccc
    10801 cccacccttc gcgctcgccc tcacgcaggc aaacgtacag cccgtcgcgg gtttttaacc
    10861 gcctgtcgcg cagaaccacc cccgcgtcca tggggatctg ccagcggtat acctgcgcgc
    10921 tacgcattac ggattccgtt taaatttgct gaaatcaggc tgacgtttct ggttgaaagc
    10981 gttgcgacct tcctgacctt cttccgtcat gtagaacagc atggtggcgt tgcccgccag
    11041 ctcctgcagc cccgcctgcc cgtcacagtc ggcgttcagt gcagctttca ggcagcgcag
    11101 cgccatcgga ctgttttgca gcatttcgcg gcaccagcga acggtctctt tttccagatc
    11161 cgccagcggt accacggtgt tgacaaggcc catatccagc gcctgtttcg cgtcgtactg
    11221 acggcacagg aaccagattt cccgcgcttt tttctgtccg acgatgcgag ccatgtagga
    11281 agcgccccag ccgccgtcga aggaaccgac tttcgggcca gtctgaccga agatggcatt
    11341 atctgccgcg atagtcaggt cgcacatcat gtgcagaacg tgaccgccgc cgatggagta
    11401 gccagccacc atcgcgacaa ccggtttcgg acaggtacgg atctgacgct ggaagtccag
    11461 cacgttcagg tgatgtacgc cggaatcatc tttatagccg ccgtaatcac cacgcacttt
    11521 ctggtcaccg ccggagcaga acgctttatc acctgcgcca gtcagaatga tcacgccgac
    11581 gttgtcgtca taacgcgcat ctgccagtgc ctggatcatc tcttttaccg tcagaggacg
    11641 gaaggcattg cgcacctgcg gacgattaat ggtgattttt gcgataccat cggtggattt
    11701 ttcataacga atgtcctcga aaccttcgga gcagtcgtgc cattcaaccg gtgcgtaaag
    11761 cattgcttca tcaggataaa tcatattgtg tcctttagtc agaaacgcaa gatctgcgcc
    11821 agacttgcga ttacgccagc gggattttcc cgatgcgcgt tatgtccggc gcgaggaatg
    11881 acatggcagt cggcagccag ttccgccgcc agggcgcgga atttgctgtc acgttcacca
    11941 cataaataat aaaacgcaaa tgtgcgggcg ctaaggttag cacgtaaatc aggctggacg
    12001 gcgagagaag tcgcctccag catggcggca agggttgcgc cattattgtt gctgcgcagc
    12061 gccaccagct cccggcgttg atcgtcattg agcgaggcaa aaacaggctg ttgataccag
    12121 tcggcaaata ccgccgttaa cggttctgtg cgaaaacgct gcgcccattg gcgatcggaa
    12181 cgctgacgtt ccgcacgttg ttcagcattt tgcagccccg gatgcccgcc ttcgacaata
    12241 accccacaaa gccccgccag cccctggcaa gccgccatca tcgccacccg tccgccaagc
    12301 gagtacccct ccagccagaa gtcaaggatg ttgtaactaa ccaaggtttt acgcagtaag
    12361 tcggtgacat catcaaatcc atcgacgcta atcgccgccg aaccaccatg acctgggaga
    12421 tcaacataca accgtgagta gtcggcaaac gcctcgccca cttcttgcca ttcgtggcaa
    12481 tcgccggaaa aaccgtgcaa aaacaccagc cagggtaaac ctggttttcc gtgttttgcc
    12541 tgcgcgtgca ggatcataaa tggcttacct gcgccagaag ttgctggagc gtttgcgcac
    12601 catcggtgtc gttaaccacc atttcaatca ccgtggtggt tggcgtgcgc caggcgtcgg
    12661 caaatgccgt ttcaagttcc tgccagtttt gcggacgatg atatttcagc tcgaacatcg
    12721 cggcggcgtg ctcaaaatgg acgttttgcg gcatcagata gaaacgctca cgctcgcttt
    12781 gcggcgttgg caacagcgag aaaatttgcc cgccgttgtt gttcaccaca attaatacca
    12841 gcggcgcaga aacctgacgc aataacgcca gcgcgttgag atcgtaaagt gcggagagat
    12901 cgcccacaat cgccagcgtc ggtttgccgc ttgcccgctg aacgcctgcg gcggtcgaaa
    12961 gcagtccgtc gataccgctg gcccctcggt tgctgtacac cgggtaacct gccggaagtt
    13021 gcgaaagcgc atcaatcaga cgtaccacca ggctgttacc gacaaacaat tgcccctgtt
    13081 caggcagata gtcgctgatg cgatgcgcca gttgcgcttc gccaaacgca tcgcgacggg
    13141 caataaccgc ctgcattgcc tgttccgcca ggcgcgggat ttcaacgcac cagggctggc
    13201 gtttttctgc cggatgcagc tccagccagt cggcaatatt ggcaattaag cggcgtccac
    13261 gatggtgcgc cggatcaagc cgcccttcga tgtcatccac aatccagtac tcttcgggtt
    13321 cacagcttgc ctgccattgc aggagccgtt tgcccgtcag gctgcttccc agttgcacca
    13381 caatttgcgc ctgctgcagc tcgctggtcg ctttggcatt gcctaaccaa agatcggcac
    13441 acggcagcgg ctgcccggtt tgtgacagca catcgccaat cagcggccag ccaagagttt
    13501 gcgcccacag ggcaactttt ttgccctctt ccgcactcat gcgcccggca accaccacgc
    13561 cgcgcttttg tcgccagaag aaccagtcgc gctgtttttc actttccaga ctaggcgctt
    13621 cacgcagcca cggtttgtcg tcctgccacc agtcacccag acgctgttgc cagctaagcc
    13681 cggtatcgtc catttcgcca tacagcggtt cagcaaacgg gcagttgata tggactcccc
    13741 ccgcatgaag cgtaccgaga gcgtggtcga tggtagaaac cagccaacgt gcggggatat
    13801 cctgggtcgg gcgcggcaat gaaatactgt gcgtggggtg agaggcgaac attcccggct
    13861 ggcgaattgc ctgattcgcg ccgcagtcaa ttagctccgg cgggcgatcg gcggttaaga
    13921 gaatcagttt ttctccggtt aacccggctt caatcagtgc cggatagaga tttgccaccg
    13981 cagtgccgga ggtcacaatc accgccaccg gctgcttgct gactttcgcc agccccagcg
    14041 ccagatgccc caacccacgc tcatcgaaat gggtgtggtg aatgaatgcg gaattctccg
    14101 ccgccgctaa cgttaacggt gtagaacgcg agcctggggc gatacagatg tgtctgacgc
    14161 cgtgacgcgt taatgcttcc agaatgaccg ccgcccagcg tcggttaaat gcgcttactg
    14221 acatgagttt gtccggtatc aatattgcgg ctaagtataa ggagctacaa aaatagatta
    14281 ttgatatgaa tcggtaatga tgcgactcat tactattcca tttgtaataa agtacgcaac
    14341 cctgccgctt tgttgtcgat ttcctgccac tcttgctcgg ggtcggaacc acggacaatg
    14401 cccgcgccag catataatcg cacgacattg ccgctaattt ttgctgagcg cagggaaacg
    14461 cagaattcgc tttgttgtaa tgagagatag cccgcagaac cggcgtacca ttctcgggtg
    14521 aacggttcgt gacgggcgat aaactgtcgc gccagatcgc gcggtaagcc agcaactgct
    14581 gccgttggct gcaactgatg taaacagatc acatcatccg ctttgttgag tgaagtccag
    14641 atacagcggc gaagatgctg cactttacgc agacgcagta cctgcggcgg taaaacatcc
    14701 agcgtctggg tatcggcctg taatcgttgg cagatatctt ccaccaccag catgttctcg
    14761 cgctggtttt tatcatccgc catcagccac tcttctaact gctgcgcctg cttatcatca
    14821 ggatgatttg ctactgttcc cgccagcgct tcagtacgca gcgctttgtc acgccgccgc
    14881 cataaccgtt ccggtgaaga gccaagaaaa gcattttcgc catcaaaggc catgtaaaaa
    14941 tggtagcaat tcagattcag tcgacgactg gcagccatca tcgccgccgc gttgaccgga
    15001 cttgcgaaat gcaggtcagt tgcccgagcg agcaccactt tgtcgagctc accttcggcg
    15061 atggttttcg ttgccagttc gattaattgc gtccagcccg ttttgtccgg ccagtgttgt
    15121 tctcgcgtgg tggttaaatg taacccaggc aagggcttga tactcaccag tgtggcgata
    15181 aattcttttg cctgaatcgc atcgtgctga agggagcttt cgctgaatag cgtcagccgc
    15241 agcgtggctt taccgccaca gcgtcgccat tccaggcggg gtaaaagtaa attgccctgc
    15301 gacgggtcaa aagcattcag cccccaaatg cgtaagtcgg cgtgttccgg gtgctggcga
    15361 agaaaacgtt gtgcctggtc caacgacgta aaacgggtaa tcgcgcccag gacggcagct
    15421 tcttcatcac cattacgttg ttgccagtag aattgcgggt acgtttgctg actggccagc
    15481 cagctcaagg catcaaaagc gtctttgaga gggaaaggaa tatcgataac ccgaatgccg
    15541 ggtgtcgccg gaatctcttg cgacaaatgg cgcagtagat tttccagcgc cgtagtaagt
    15601 gattgcacgc ggacctctcc ctgttaaaag cctcacatta tacggggtac tacaaaaaaa
    15661 atgcagtacc ccggtgtagg gaggttttaa cggcgtgcca gcaacagtcc tagtaccagc
    15721 ccaacggccg cgcccacacc aattccttgc caaggttttt cgtggacgta gtcatcagca
    15781 cgataaacag cctgcttcgc ccgatagtaa taactgtctg aaacctggct aacccgtttt
    15841 ttcacatcat ccagcgcttt ttctgcacgc gctttcagct caacatattt ctgatcagcg
    15901 ggatcgccag aggagcggag cacctcttcc agtgtctcac taagcagcgt caggtcgtca
    15961 tcgatacgtg tatcaccaaa ctgattagac attctcgttc tccatttgcg taaaacctgt
    16021 cactaactat agacaagggt tgttgattac gcctgaatta cctcgcgtgc catcccaatg
    16081 tgtgggatac catcttcttc atagacctcc gtcacaggga taaaaccgaa actctggtag
    16141 aagttttgca gatgcgcctg cgccccgagg taaacaggct tatcaggcca gtgatgcgtg
    16201 caggtgtcga gggttttact catcagttgc tgccccactt tttcgccacg caacgcttca
    16261 ctgacaatca cccgaccaat aacgaccggc tcaagatcat catcactttt cagaatcctc
    16321 gcatatgcca ccagttcatc atttttccaa ccgagaatat ggcgattatc ccccgtcaaa
    16381 tcatcaccat cgatatcctg ataagggcaa ttctgctcga caacaaacac cgcgcaacgc
    16441 agttgtaata aggcataaag ctgggaaacc gataattcag agtgatgcag atcttgccat
    16501 tcaatcataa tgctctcctt ttagatgtat accttatact agccggaata ttttttgaaa
    16561 cgtgatgaac tcatggaatt aattttttta ggtacttcag ccggtgtgcc aacccgcacg
    16621 cgcaatgtca cggcaatatt gcttaacctg caacatccga cccagagcgg actttggttg
    16681 tttgactgcg gtgaaggcac ccagcatcag ctactgcata ccgcctttaa ccctggaaaa
    16741 ctggacaaga tttttatcag tcaccttcat ggcgatcatc tttttggttt acccggcttg
    16801 ctgtgcagtc gttctatgtc aggcattatc caacccttaa cgatttatgg tccgcaaggt
    16861 atccgtgaat ttgtggaaac cgcgctgcgg attagcggct catggaccga ttatccgctg
    16921 gaaattgtcg aaattggcgc tggcgaaatt ctcgatgatg gcctgcgcaa agtaaccgct
    16981 tatccgctgg aacacccact ggaatgttat ggctatcgta ttgaagaaca tgataaaccg
    17041 ggtgcattaa atgcccaggc attaaaagct gctggcgtgc cgcctggccc actgtttcag
    17101 gaattaaaag cgggcaaaac aatcacgctg gaagatggaa ggcagattaa cggcgcagat
    17161 tacttagctg ctccagtgcc aggtaaagcg ctcgctattt tcggcgatac cggcccctgc
    17221 gatgccgcac ttgacctggc taaaggtgtc gatgtcatgg tgcacgaagc gacgctggat
    17281 ataaccatgg aagccaaagc caatagtcgc ggccatagct ctacacgcca ggctgcgaca
    17341 ctagcccgtg aggctggagt cggtaagcta atcattaccc acgtcagctc gcgctatgat
    17401 gacaaaggtt gtcagcacct gttacgtgaa tgcaggtcaa ttttcccggc gactgaacta
    17461 gcgaatgatt tcaccgtgtt taacgtttaa ctctg
//
LOCUS       DADMJB010000083        17483 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.083, whole genome shotgun sequence.
ACCESSION   DADMJB010000083 DADMJB010000000
VERSION     DADMJB010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17483
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.083"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(34..2631)
                     /gene="topA"
                     /locus_tag="JN078_002430"
     CDS             complement(34..2631)
                     /gene="topA"
                     /locus_tag="JN078_002430"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HAY9041605.1"
                     /translation="MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAA
                     KKSADSTSTKTAKKPKKDERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEK
                     ADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQAFNKPGELNID
                     RVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEE
                     FWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPT
                     TSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNM
                     VRGYISDNFGKKYLPESPNQYASKENSQEAHEAIRPSDVNVMAESLKDMEADAQKLYQ
                     LIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRIL
                     PAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRG
                     YVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDH
                     FFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCPTCGRKMGIRTASTGVFLGCSGYAL
                     PPKERCKTTINLVPENEVLNVLEGEDAETNALRAKRRCPKCGTAMDSYLIDPKRKLHV
                     CGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHLKMGRFGKYMACTNEECKNTR
                     KILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVFLAANTFPKSRETRAPLVE
                     ELYRFRDRLPEKLRYLADAPQQDPEGNKTMVRFSRKTKQQYVSSEKDGKATGWSAFYV
                     DGKWVEGKK"
     gene            3011..3262
                     /locus_tag="JN078_002431"
     CDS             3011..3262
                     /locus_tag="JN078_002431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciN family protein"
                     /protein_id="HAY9041606.1"
                     /translation="MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLV
                     FTGDYFLDEQGLPTAKSTAVFNMFKHLAHVLSEKYHLVD"
     gene            complement(3298..4347)
                     /gene="sohB"
                     /locus_tag="JN078_002432"
     CDS             complement(3298..4347)
                     /gene="sohB"
                     /locus_tag="JN078_002432"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HAY9041607.1"
                     /translation="MELLSEYGLFLAKIVTVVLAIAAIAAIIVNVAQRNKRQRGELRV
                     NNLSEQYKEMKEELAAALMGSHQQKQWHKAQKKKHKQEAKAAKAKAKLGEVATDSKPR
                     VWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYGLAASQLQR
                     LRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKY
                     IDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMRPSLDIEQVAT
                     GEHWYGQQAVEKGLVDEINTSDEVILSLMEGREVVNVRYMQRKRLIDRFTGSAAESAD
                     RLLLRWWQRGQKPLM"
     gene            4567..5325
                     /locus_tag="JN078_002433"
     CDS             4567..5325
                     /locus_tag="JN078_002433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciK family oxidoreductase"
                     /protein_id="HAY9041608.1"
                     /translation="MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGR
                     NEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIVVNYPRLDGVLHNAGL
                     LGDICPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA
                     NWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAFPTEDPQKLKTPA
                     DIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGISQ"
     gene            5322..5913
                     /gene="cobO"
                     /locus_tag="JN078_002434"
                     /pseudo
     CDS             5322..5913
                     /gene="cobO"
                     /locus_tag="JN078_002434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415786.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
     gene            complement(5953..6825)
                     /gene="rluB"
                     /locus_tag="JN078_002435"
     CDS             complement(5953..6825)
                     /gene="rluB"
                     /locus_tag="JN078_002435"
                     /EC_number="5.4.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2605) synthase RluB"
                     /protein_id="HAY9041609.1"
                     /translation="MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEV
                     TPGLKIRIDGHLISVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR
                     WIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGV
                     QLEDGPAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDI
                     PLPKGLPRGGWTELDLAQTNYLRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHS
                     QVSGGRRSGGRNNG"
     gene            complement(7036..8931)
                     /locus_tag="JN078_002436"
     CDS             complement(7036..8931)
                     /locus_tag="JN078_002436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2207 domain-containing protein"
                     /protein_id="HAY9041610.1"
                     /translation="MAGKFRCILLLIAGLFVSSLSYAENPEIPSYEEGISLFDVEATL
                     QPDGVLDIKENIHFQARNQQIKHGFYRDLPRLWMQPDGDAALLNYHIVGVTRDGIPEP
                     WHLDWHIGLMSIVVGDKQRFLPQGDYHYQIHYQVKNAFLREGDSDLLIWNVTGNHWPF
                     EIYKTRFSLKFPDIAGNPFSEIDLFTGEEGDTYRNGRILEDGRIESRDPFYREDFTVL
                     YRWPHALLSNAPAPQTTNIFSHLLLPSTSSLLIWFPCLFLVCGWLYLWKRRPQFTPVD
                     VIETDVIPPDYTPGMLRLDAKLVYDDKGFCADIVNLIVKGKIHLEDQYDKNQQILICV
                     NEGATRNNEVLLPAEQLLLEALFRKGDKVVLTGRRNRVLRRAFLRMQKFYLPRKKSLF
                     YRPDTFLQWGGLAILAIILYGNLSPVGWAGMSLVGDMFIMICWIIPFLFCSLELLFAR
                     DDDKPCVNRAIITLFLPLICSGVAFYSLYINVGDVFFYWYMPAGYFSAVCLTGYLTGM
                     GYIFLPKFTQTGQQRYARGEAIVNYLARKEAATHSGRRRKGETRKLDYALLGWAISAN
                     LGREWALRIAPSLSSAIRAPEIARNGVLFSLQTHLSCGANTSLLGRSYSGGGAGGGAG
                     GGGGGGW"
     gene            complement(8959..9579)
                     /locus_tag="JN078_002437"
     CDS             complement(8959..9579)
                     /locus_tag="JN078_002437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HAY9041611.1"
                     /translation="MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKI
                     EDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILK
                     GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEI
                     KDRLEKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL"
     gene            complement(9576..10457)
                     /gene="yciV"
                     /locus_tag="JN078_002438"
     CDS             complement(9576..10457)
                     /gene="yciV"
                     /locus_tag="JN078_002438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exoribonuclease"
                     /protein_id="HAY9041612.1"
                     /translation="MSDTNYAVIYDLHSHTTASDGCLTPEALVHRAVEMRVGTLAITD
                     HDTTAAIAPAREEISRSGLALNLIPGVEISTVWENHEIHIVGLNIDITHPLMCEFLAQ
                     QTERRNQRAQQIAERLEKAQIPGALEGAQRLAQGGAVTRGHFARFLVECGKASSMADV
                     FKKYLARGKTGYVPPQWCTIEQAIDVIHHSGGKAVLAHPGRYNLSAKWLKRLVAHFAE
                     HHGDAMEVAQCQQSPNERTQLTTLARQHHLWASQGSDFHQPCPWIELGRKLWLPAGVE
                     GVWQLWEQPQNTTEREL"
     gene            10595..10639
                     /gene="trpL"
                     /locus_tag="JN078_002439"
     CDS             10595..10639
                     /gene="trpL"
                     /locus_tag="JN078_002439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon leader peptide"
                     /protein_id="HAY9041613.1"
                     /translation="MKAIFVLKAWWRTS"
     gene            10731..12293
                     /gene="trpE"
                     /locus_tag="JN078_002440"
     CDS             10731..12293
                     /gene="trpE"
                     /locus_tag="JN078_002440"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HAY9041614.1"
                     /translation="MQTQKPTLELLTCEGAYRDNPTALFHQLCGDRPATLLLESADID
                     SKDDLKSLLLVDSALRITALGDTVTIQALSGNGEALLTLLDNALPAGVENEQSPNCRV
                     LRFPPVSPLLDEDARLCSLSVFDAFRLLQNLLNVPKEEREAMFFGGLFSYDLVAGFED
                     LPQLSAENNCPDFCFYLAETLMVIDHQKKNTRIQASLFAPNEEEKQRLTARLNDLRQQ
                     LTEAAPPLPVVSVPHMRCECNQSDEEFGGVVRLLQKAIRTGEIFQVVPSRRFSLPCPS
                     PLAAYYVLKKSNPSPYMFFMQDNDFTLFGASPESSLKYDATSRQIEIYPIAGTRPRGR
                     RADGSLDRDLDSRIELEMRTDHKELSEHLMLVDLARNDLARICTPGSRYVADLTKVDR
                     YSYVMHLVSRVVGELRHDLDALHAYRACMNMGTLSGAPKVRAMQLIAEAEGRRRGSYG
                     GAVGYFTAHGDLDTCIVIRSALVENGIATVQAGAGIVLDSVPQSEADETRNKARAVLR
                     AIATAHHAQETF"
     gene            12293..13888
                     /gene="trpD"
                     /locus_tag="JN078_002441"
     CDS             12293..13888
                     /gene="trpD"
                     /locus_tag="JN078_002441"
                     /EC_number="2.4.2.18"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional anthranilate synthase glutamate
                     amidotransferase component TrpG/anthranilate
                     phosphoribosyltransferase TrpD"
                     /protein_id="HAY9041615.1"
                     /translation="MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERL
                     ATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG
                     EILHGKASSIEHDGQAMFAGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHD
                     ADRVCGFQFHPESILTTQGARLLEQTLAWAQRKLEPTNTLQPILEKLYQAQTLSQQES
                     HQLFSAVVRGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADI
                     VGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNAD
                     KSRQALDELGICFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGV
                     YSPELVLPIAETLRVLGYQRAAVVHSGGMDEVSLHAPTIVAELHDGEIKSYQLTAEDF
                     GLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRLHGHEDLQANA
                     QTVLEVLRSGSAYDRVTALAARG"
     gene            13892..15250
                     /gene="trpCF"
                     /locus_tag="JN078_002442"
     CDS             13892..15250
                     /gene="trpCF"
                     /locus_tag="JN078_002442"
                     /EC_number="4.1.1.48"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309861.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional indole-3-glycerol-phosphate
                     synthase TrpC/phosphoribosylanthranilate isomerase TrpF"
                     /protein_id="HAY9041616.1"
                     /translation="MQTVLAKIVADKAIWVETRKQQQPLASFQNEVQPSTRHFYDALQ
                     GARTAFILECKKASPSKGVIRDDFDPARIAAIYKHYASAISVLTDEKYFQGSFDFLPI
                     VSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGG
                     LTEVSNEEELERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGIN
                     TYAQVRELSHFANGFLIGSALMAHDDLHAAVRRVLLGENKVCGLTRGQDAKAAYDAGA
                     IYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQLH
                     GNEDQLYIDTLREALPTHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDWS
                     LLNGQSLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVESQPGIKDARLLASVFQTLR
                     AY"
     gene            15262..16455
                     /gene="trpB"
                     /locus_tag="JN078_002443"
     CDS             15262..16455
                     /gene="trpB"
                     /locus_tag="JN078_002443"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016158396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HAY9041617.1"
                     /translation="MTTLLNPYFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQ
                     FNDLLKNYAGRPTALTKCQNITAGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMG
                     KTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVH
                     SGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVCEFQRMIGEETKAQILE
                     REGRLPDAVIACVGGGSNAIGMFADFINETNVGLIGVEPGGHGIETGEHGAPLKHGRV
                     GIYFGMKAPMMQTEDGQIEESYSISAGLDFPSVGPQHAYLNSTGRADYVSITDDEALE
                     AFKTLCLHEGIIPALESSHALAHALKMMRETPEKEQLLVVNLSGRGDKDIFTVHDILK
                     ARGEI"
     gene            16455..17261
                     /gene="trpA"
                     /locus_tag="JN078_002444"
     CDS             16455..17261
                     /gene="trpA"
                     /locus_tag="JN078_002444"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HAY9041618.1"
                     /translation="MERYESLFAQLKERKEGAFVPFVTLRDPGIEQSLKIIDTLIEAG
                     ADALELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMY
                     ANLVFNKGIDEFYAQCEKVGVDSVLVADVPVEESAPFRQAALRHNVAPIFICPPNADD
                     DLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPD
                     QVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKVFVQPMKAATRS"
BASE COUNT         4221 a         4671 c         4346 g         4245 t
ORIGIN      
        1 cctttgttta taaaaacctg acagaattaa aggttatttt tttccttcaa cccatttgcc
       61 atcaacataa aatgctgacc agccagtcgc ctttccgtct ttttccgaag agacatattg
      121 ctgtttggtt ttacggctaa agcgaaccat ggtcttatta ccttccggat cctgctgtgg
      181 cgcatcggcc agataacgca gtttttccgg cagacggtcg cggaagcgat aaagctcttc
      241 caccagtggc gcacgcgttt cacgcgattt cgggaaagtg ttggcagcca ggaaaacacc
      301 cgcagcgccg tcacgcagca cgaaataagc atctgatttt tcgcacggca gctcaggtaa
      361 tggcaccgga tcttctttcg gtggtgccac ttcgccgtta cgtaaaatct tacgtgtgtt
      421 tttacactct tcgttggtgc aggccatgta tttaccgaaa cgccccattt tcaggtgcat
      481 ttcagagcca catttttcac actcaacgat cgggccgtca taacctttaa tgcggaattc
      541 gccctcttcg atctcgtaac cgtcgcaggt tgggttatta ccacagacat gcaacttacg
      601 tttcggatcg atgagatagc tgtccatcgc cgtgccgcat ttcgggcaac gacgttttgc
      661 gcgcagcgcg ttggtttcag cgtcttcgcc ttccagtacg ttcagcactt cgttttccgg
      721 caccaggtta atggtggttt tgcaacgctc tttcggcggc agcgcataac cagaacagcc
      781 aaggaatacc ccggtgctcg ctgtgcgaat ccccattttg cgaccacaag tcgggcagtc
      841 aatgctggtc agaaccatct ggttcgggcg cataccaccc tcttccggat ctttttcagc
      901 tttatctaac tgctgggtga aatccgagaa gaagtgatcc agtacagctt tccactctgc
      961 ttcgtgattt gccacctggt cgaggctgtt ttccatctgt gcggtgaagt cgtagttcat
     1021 taactcgcgg aaattttctt caaggcgatc ggtgacgatt tcgcccattt tttccgcata
     1081 gaaacgacga ttttctactc gcacgtagcc acgatcctga atggtcgaaa tgatcgacgc
     1141 ataggtagac ggacgaccga taccgcgttt ttccagctct ttaaccagcg atgcttcact
     1201 gaaacgggct ggcggcttgg taaagtgctg ggctggtgta agttcaacga gcgtcagagc
     1261 atcgccttta ttaactgctg gtaagatgcg atcttcatcg cctttacgca acgcaggcat
     1321 cacttttgtc cagccatcaa aacgcaaaat acgaccgcgt gctttcaggc ggaaatcgcc
     1381 cgcaccaacg gtcagcgtcg tggagtcata tttcgctggg gtcatctggc aggctacgaa
     1441 ctgacgccag attaactggt acagtttctg cgcatctgct tccatatcct tcagcgattc
     1501 cgccatcaca ttgacgtcag aaggacgaat cgcttcgtgc gcttcctgtg agttttcttt
     1561 gctggcgtac tgattcggac tttccggcag atatttctta ccaaaattat cgctgatata
     1621 accgcgaacc atatttaccg cgtcctgact caggttagtg gagtcggtac gcatgtaagt
     1681 gatatagcct gcttcataca aacgctgcgc catcatcatg gtttttttca cgccaaatcc
     1741 aagacgggtg ctggcagctt gttgcagcgt agaggtaata aaaggagcgc caggtttact
     1801 ggttgtcggt ttgtcttcac gttccagcac gctgtagcgc gctttttcca gcagacttac
     1861 cgcagcctga gtttgttctt tgttgaccgg acggaacggt ttgtcgttct gatgagtcac
     1921 ctgtaacgcc aacgcttcac cagatggcgt ggtcgtgctg gcatcgactt cccagaactc
     1981 ttccggcacg aacgctttaa tttcacgctc acgctcgacc accaggcgaa ccgccaccga
     2041 ctgcacacga ccggcagaca gaccacgagc gatctttttc catagcagcg gcgaaaccat
     2101 ataccccacc acgcggtcca taaagcgacg cgcctgctgg gcattaacac gatcaatatt
     2161 cagctcaccc ggtttgttaa atgcctggcg gatcgcgttt ttagtaattt cgttaaacac
     2221 cactcggcta tagcgcgcat catcaccccc aatcacttcc cgcaggtgcc atgcaatggc
     2281 ttccccttcg cggtcaaggt cggttgcgag atagatgtgg tcggcttttt cagccagttg
     2341 tttcagttca gagacgacct tctctttacc aggcaacact tcatagtgcg cctcccaatt
     2401 gtgccacggg tcaaccccca tacggttgac gagagcgcca cgttcatcct ttttaggctt
     2461 tttagccgtc ttggtggagg tagagtcggc actctttttg gcagctgagc cactggtcgg
     2521 caaatcgcgg atgtgaccga cgctggattt caccacgtag tcactaccca gatacttgtt
     2581 gatcgttttg gcttttgccg gggactcaac gatgacaaga gctttaccca tattcacctt
     2641 acctaatttg attcttccag gaatgcgtcg cacgttgata aaccttccac tggcaacgag
     2701 ttaccgatat ggactcgttc tctgcggata tcaacccctt gtcgtgactc tgttcacgaa
     2761 aattcaggtg actgagttaa caggtcttgg cctacaggcg ctatagcacg acggaatttt
     2821 ggtcgaatgt caagcaaatc tattgccaga ttgacgaaag cgtcacactg tacctgataa
     2881 aatccgatac gcaactttat tagcatgcaa aatccaaagt tgccagtaag gcgctcttgc
     2941 caccagcgtg gtatatttgt ctgcaagcca tgcctggcgt agactaatgt ccttatttaa
     3001 ggagtaaata atgaacaaag agacacaacc catcgaccgc gaaacgctgt tgaaagaggc
     3061 caacaaaatc attcgtgagc atgaggatac gctcgcaggg attgaagcca ccggcgtcac
     3121 gcagcgtaat ggcgtgctgg tatttaccgg cgactacttt ttagatgaac aaggattgcc
     3181 aacagccaaa agcaccgcgg tgtttaatat gttcaaacac ctggcccatg tgctttcaga
     3241 aaaatatcat ctggttgatt aaagcaaaac gcgaggtctt agcctcgcgt ttgtctttta
     3301 catcaatggc ttttgacccc gctgccacca gcgtagcaac aatcgatcgg cgctctctgc
     3361 cgcgctgccg gtgaatcggt caatgagtcg tttacgctgc atatagcgta cattaaccac
     3421 ttcacggcct tccatcaggc taagaataac ttcatcactg gtgttgattt catcaaccag
     3481 gcctttctct accgcctgtt gtccgtacca gtgttcacct gttgccacct gttcaatatc
     3541 cagagacgga cgcatacgct tcacaaaatc tttaaacaac tgatgcgttt cgttcaactc
     3601 ttcgcggaat ttctcccgcc cttcttcggt attttcaccc agcaacgtca gagtacgctt
     3661 atactgcccg gcagtgtgca gttcgatatc aatatatttg cttttcagga agcggttaaa
     3721 gttgggcatt tgcgccacca ccccaatgga acccacaata gcaaacggtg cggaaacaat
     3781 tttgtccgcc acacaggcca tcatgtaacc gccgctggca gcgactttgt ctaccgtaac
     3841 agttaaagga atgtttttat cacgcagacg ctgcagctgc gaagccgcca acccgtaacc
     3901 atgcaccatg ccaccagggc tttccagacg gagcacaacc tgatcctgcg gtttgaatgc
     3961 tgcgagtacc gccgttatct cttcacgtag cgagttcact tcatgggcgt ccatgctgcc
     4021 tttaaaatcc agcacccaga cgcgaggttt actgtcagtt gccacctcgc ccagtttggc
     4081 tttcgctttt gctgctttcg cttcttgctt gtgctttttc ttctgcgctt tgtgccactg
     4141 tttttgctga tgtgagccca tcagcgccgc ggccagttct tctttcatct ccttatactg
     4201 ttcgctgaga ttgttgaccc gtaactcgcc acgctggcgt ttattacgtt gagcaacatt
     4261 gacaataatg gcggcaatcg ccgcaatcgc tagcacaacg gtaacgattt tcgccaaaaa
     4321 caaaccatat tcagacaaca attccacgag tccccacctt ggttaaacaa cgctttggct
     4381 cacagtttac aacaggcatg ttaagccgtc tcgcagagat gttattgcag cgaaagtatg
     4441 acaaagtatc cattttgcgg tgttatcgcc ccaggctgat tgaaatgccc ttctgtttca
     4501 ggcataaagc cccaaagtca taaagtacac tggcagcgcg acagacaacg tcgttgagga
     4561 gtagccatgc attaccagcc aaaacaagat ttactcaatg atcgcattat cctggtgacg
     4621 ggagccagcg atgggattgg tcgtgaagcc gcgatgacgt atgcacgcta tggtgcgaca
     4681 gtgattctgt tgggccgtaa tgaagaaaaa ttacgtcagg tagccagcca cataaacgaa
     4741 gaaactgggc gtcagccaca gtggtttatt ctcgatttgc tgacctgcac gtccgaaaat
     4801 tgccaacaac tggcacagcg cattgtcgtt aattatccgc gtctggatgg tgttttgcat
     4861 aatgccggat tgctcggcga tatttgccca atgagcgaac aaaatccgca ggtctggcag
     4921 gacgtcatgc aggtcaacgt taatgccacc tttatgctca cccaggcact gcttccttta
     4981 ttactcaaat cggacgccgg ttcactggtc tttacttcat caagcgttgg acgtcaggga
     5041 cgagctaact ggggtgcata tgcagcgtcg aaatttgcca ccgaagggat gatgcaggta
     5101 ctggccgatg aatatcagca gcgcctgcgc gtcaactgca ttaacccagg cggtacgcgc
     5161 accgcaatgc gcgcaagcgc cttcccgacc gaagatccac agaaacttaa aacacccgct
     5221 gatatcatgc cgctctacct ctggctgatg ggcgatgaca gccgccgtaa aaccggcatg
     5281 acctttgacg cccaaccggg ccgtaaacca ggaatttccc aatgagtgat gaacgctacc
     5341 aacagcgtca gcagcgagtg aaagaaaaag tagatgctcg tgtggcacag gccccaggat
     5401 gaacgcggta ttatcatcgt ctttaccggc aatggaaaag gcaaaaccac cgcggcattt
     5461 ggtacggcaa cacgcgcagt tggtcacgga aaaaaagtgg gcgtcgtgca gtttattaaa
     5521 ggcacctggc ctaatggcga acgcaatctg ctggaaccac atggcgttga gtttcaggtg
     5581 atggcaacgg gctttacctg ggatacacaa aaccgcgagt ctgataccgc cgcctgccgc
     5641 gaagtctggc aacatgcaaa gcggatgctt gctgattcct cactggatat ggttttgctt
     5701 gatgaactga cgtatatggt ggcgtatgac tatttgccac tggaagaagt ggtgcaggcg
     5761 ttaaatgaac gtccacatca acagacggtg attatcacgg gtcgaggctg tcatcgggat
     5821 attcttgaac tggcggatac ggtaagtgag ctgcgcccca tcaaacatgc gtttgatgcc
     5881 ggtgttaagg cgcaaatagg gattgattat taatctgtaa aaatgccgga tatgacgtcc
     5941 ggcatacttt gattaaccgt tattacgccc gccagaacga cgaccgccgc tcacctgact
     6001 gtgacgtttc accgcacgac gaatctgatt agccttcatg cgacgacggt ctttttctac
     6061 agcgacttta gagctggttt ctggcggaag ctccaccagt tcgcgcagat agttagtctg
     6121 ggcgaggtcc agctccgtcc agccaccgcg tggcagacct tttggcagtg ggatatcacc
     6181 gtaacgaaca cggatcaggc ggctcacctg cacaccaacc gcttcccaca gacgacgaac
     6241 ttcacggtta cggccttcgg tcagagtcac gttgtaccac tggttgatcc cttcgccgcc
     6301 gctgaacttg atggttttaa aagctgccgg accatcttcc agttgcacgc cacgactcaa
     6361 atcacgcagt ttcgcgtcgt caacctgacc aaatacacgc acggcgtatt cacgttcaac
     6421 ttcacggctt ggatgcatta aacggtttgc cagttcacca tcggtggtga acagcagcag
     6481 accacaggtg ttaacgtcca gacgacctac ggcaatccag cgtgcgccac gcagctttgg
     6541 cagacggtca aacaccgtcg gacgcccttc cggatcgtta cgggtacaca actcaccttc
     6601 cggtttgtaa taggccagaa cgcgacaaat ttgttcagcg gactcacgta ccgaaatcag
     6661 atgaccatcg atacgaattt tcagcccagg ggtaacttca acgcgatcgc cgagtttagc
     6721 aattttgcca tcaacactca cacgaccggc ttcaataata gattcgattt cacggcggga
     6781 gccgtggcca gcgcgggcca gcactttctg taatttttcg ctcatagagc ttccttttgg
     6841 tgtcgccttc ccaggcgtct gatatgcttt tgtgcaacag tgagtcagaa cttacatctg
     6901 actcactgat agtaaagtct gtttgaactc ttcaggcctt aagtaaacga ctcgacgttt
     6961 atcggcctgg ctttgaggcg caacatacta cactatcttt atggttaaag cttgtttcga
     7021 ttaacatcag cttaattacc agccaccacc gcctccgcca cccgcgccgc cgccagcacc
     7081 accaccggaa taacttcgcc ccaacaaact ggtattggcc ccgcaactta ggtgcgtctg
     7141 taatgagaat aaaacgccgt tacgggcaat ctctggagcg cgaatcgccg aagaaagcga
     7201 aggggcaatg cgtaacgccc attccctccc caaatttgcc gatatagccc aacctagcaa
     7261 cgcgtaatcc agtttccgtg tttccccttt ccgccgacgt ccactgtgtg ttgctgcctc
     7321 tttacgcgca agatagttaa cgatagcttc accgcgggca taacgttgct gcccagtttg
     7381 ggtaaacttt ggcagaaaaa tataccccat gccagtgaga taaccggtca ggcaaacagc
     7441 gctaaaataa cccgctggca tataccagta aaagaataca tctccgacat tgatatagag
     7501 agaatagaag gccacgcctg aacaaatcag tggtaaaaac aaagtgatga ttgcacgatt
     7561 aacgcaaggc ttgtcatcat cgcgggcaaa caaaagctca agggaacaaa ataaaaaagg
     7621 aataatccag cagatcataa taaacatatc gcctaccaga ctcattcctg cccaacctac
     7681 gggactcagg ttaccgtaga gaatgatcgc caatattgcc agtccacccc attgcaaaaa
     7741 cgtatcaggc cggtaaaaca aagacttttt acgcggcaga taaaatttct gcatccgtaa
     7801 aaatgccctg cgtaagactc tgttgcgtct ccccgtaaga acgaccttat cgcctttacg
     7861 aaataacgct tccagtaata actgctctgc gggcagtaat acctcattat ttctggtcgc
     7921 gccttcatta acacaaatca ggatttgctg gttcttatca tactgatctt ccagatgaat
     7981 ttttcccttc acgatcagat ttacgatatc ggcacagaaa cctttatcgt cgtaaaccag
     8041 cttcgcatcg agacgtaaca tgccgggcgt gtaatctggc ggaatgacat cggtttcaat
     8101 cacatctacc ggcgtaaatt gcggcctgcg cttccagaga tataaccatc cacaaaccag
     8161 gaatagacac ggaaaccaaa ttaacaacga tgacgtggag ggtaaaagaa gatggctgaa
     8221 aatattcgtc gtttgtggag ccggggcatt gctaagtaac gcgtgaggcc agcggtagag
     8281 taccgtgaaa tcttcacgat aaaacggatc gcgggattca attcttccgt cctcaaggat
     8341 gcggccattt cgatatgtgt cgccctcttc tccagtaaag agatcgattt cgctaaatgg
     8401 attacccgcg atatcaggga acttgagtga aaatcgggtc ttatagattt caaacggcca
     8461 gtggttacca gtcacgttcc agattaacag atctgaatct ccctcacgca ggaaagcatt
     8521 tttaacctga taatgaattt gataatgata gtcgccttga ggcaagaaac gttgtttatc
     8581 gcccacgaca atactcatta acccgatatg ccagtcaaga tgccagggtt caggaatacc
     8641 atcacgagtg acgccaacaa tatgatagtt cagcagtgca gcgtccccat caggctgcat
     8701 ccagagtcgt ggtaaatcac gataaaatcc gtgcttaatc tgctgatttc gcgcctgaaa
     8761 atgaatattt tctttgatgt cgagcacccc atccggttgc agagtggctt caacatcaaa
     8821 gagcgagatc ccttcttcat aagaagggat ctccgggttt tctgcataac ttagagatga
     8881 tacaaacagc cctgctatca acagcaaaat gcagcgaaac ttccctgcca tagtcttcca
     8941 tccgtggaac gcaatttgtt ataagaaagg cttcacatca cccacgcctt cacgcaccac
     9001 gaccggcgta tcatcggtaa gatcaatgac cgttgtcggt ttctgtccga gatagccgcc
     9061 gtggataatc aaatccacct gtttttccag acggtcttta atttcttctg gatcggattc
     9121 ggtaaattcg ctgcctggca gcattagcga agtggaaagc atcggttcgc ccagtgcttc
     9181 aagcaacgcc tgcgcaatcg ggttagaagg cacacgcata ccgatggttt tgcgtttttc
     9241 ctgcaacaga cggcgtggca cctccttcgt ccccttcagg atgaaggtat agttgcccgg
     9301 cgtgttgttt ttcattaaac gaaacgcaac gttatccacg aatgaatagg tcgaaagttc
     9361 agaaagatcg cgacacatca gggtaaagtt gtgaccgtcc ggcagctggc gaatacgaca
     9421 aatacgctcc atcgcgtttt tatcttcaat tttacagccg agcgcatagc cggaatcagt
     9481 tggataaaca atcaccccgc ctttacgcac gatctccacc gcctggttga tcagacgttg
     9541 ctgcgggtta tcaggatgaa tataaaaaaa ctggctcata attccctctc tgtggtgttc
     9601 tgcggctgtt cccatagctg ccagacgcct tcaacgcctg cgggcagcca gagtttacga
     9661 cccagttcga tccacgggca tggctgatga aaatcagatc cttgtgatgc ccataaatga
     9721 tgctgacgcg caagtgtcgt caactgggtg cgttcattgg gcgattgctg gcactgcgcg
     9781 acttccatcg cgtcgccgtg gtgttcggca aaatgcgcaa ccaatctttt cagccattta
     9841 gcactaagat tgtaccgccc aggatgagct agcaccgcct taccgccaga atgatgaatg
     9901 acatcaatag cttgttctat tgtacaccac tgtggcggaa cgtatccggt tttcccgcgc
     9961 gccagatact ttttaaagac atctgccatt gaactggctt tgccgcactc aacaaggaaa
    10021 cgcgcaaaat gaccgcgcgt cactgcgccg ccctgcgcca gtcgttgtgc gccttccagc
    10081 gccccaggta tttgcgcttt ttcaagtctt tcggcaattt gctgcgcccg ctgattgcgc
    10141 cgttctgtct gctgcgcgag gaactcacac attagcggat gagtaatatc aatattcagc
    10201 ccgacaatat gaatttcatg attttcccag accgtggaaa tttccacgcc gggaataaga
    10261 ttcagcgcca gtcccgaacg tgaaatttcc tctcttgctg gcgcgattgc agctgtggtg
    10321 tcatggtcgg tgatcgccag ggtgccgacg cgcatctcga ctgcacggtg caccaatgct
    10381 tctggcgtca ggcagccatc ggaagctgtg gtatggctgt gcaggtcgta aatcactgcg
    10441 taattcgtgt cgctcaaggc gcactcccgt tctggataat gttttttgcg ccgacatcat
    10501 aacggttctg gcaaatattc tgaaatcagc tgttgacaat taatcatcga actagttaac
    10561 tagtacgcaa gttcacgtaa aaagggtatc gacaatgaaa gcaattttcg tactgaaagc
    10621 ttggtggcgc acttcctgaa acgggcagtg tattcaccat gcgtaaagca atcagatacc
    10681 cagcccgcct aatgagcggg cttttttttg aacaaaatta gagaataaca atgcaaacac
    10741 aaaaaccgac tctcgaactg ctaacctgcg aaggcgctta tcgcgacaac ccgactgcgc
    10801 tttttcacca gttgtgtggg gatcgtccgg caacgctgct gctggaatcc gcagatatcg
    10861 acagcaaaga tgatttaaaa agcctgctac tggtagacag tgcgctgcgc attacagcat
    10921 taggtgacac tgtcacaatt caggcacttt ccggcaacgg cgaagccctg ctgacactac
    10981 tggataacgc cctgcctgcg ggtgtggaaa atgaacaatc accaaactgc cgtgtgctgc
    11041 gcttcccccc tgtcagtcca ctgctggatg aagacgctcg cttatgctcc ctttcggttt
    11101 ttgacgcttt ccgtttattg cagaatctgt tgaatgtacc gaaggaagaa cgagaagcaa
    11161 tgttcttcgg cggcctgttc tcttatgacc ttgtggcggg atttgaagat ttaccgcaac
    11221 tgtcagcgga aaataactgc cctgatttct gtttttatct cgctgaaacg ctgatggtga
    11281 ttgaccatca gaaaaaaaac acccgcattc aggccagcct gtttgctccg aatgaagaag
    11341 aaaaacaacg tctcactgct cgcctgaacg atcttcgcca gcagctgacc gaagccgcgc
    11401 cgccgctgcc ggtggtttcc gtgccgcata tgcgttgtga atgtaaccag agcgatgaag
    11461 agttcggtgg cgtggtgcgt ttgttgcaaa aagcgattcg caccggagaa attttccagg
    11521 tggtgccgtc tcgccgtttc tctctgccct gcccgtcacc gctggcggcc tattacgtgc
    11581 tgaaaaagag taatcccagc ccgtacatgt tttttatgca ggataatgat ttcaccctgt
    11641 ttggcgcgtc gccggaaagt tcgctcaagt atgacgccac cagccgccag attgagatct
    11701 acccgattgc cggaacacgc ccgcgcggtc gtcgcgccga tggttcactg gacagagacc
    11761 tcgacagccg catcgaactg gaaatgcgta ccgatcataa agagctttct gaacatctga
    11821 tgctggtgga tctcgcccgt aatgatctgg cacgcatttg cacccccggc agccgctacg
    11881 tcgccgatct taccaaagtt gaccgttact cttacgtgat gcacctggtc tcccgcgtgg
    11941 tcggtgagct gcgccacgat ctcgacgccc tgcacgctta ccgcgcctgt atgaatatgg
    12001 ggacgttaag cggtgcgccg aaagtacgcg ccatgcagtt aattgccgag gcggaaggtc
    12061 gtcgccgcgg cagctacggc ggcgcggtag gttatttcac cgcgcatggc gatctcgaca
    12121 cctgcattgt gatccgctcg gcgctggtgg aaaacggtat cgccaccgtg caagccggtg
    12181 ctggcatagt ccttgattct gttccgcagt cggaagccga cgaaacccgt aataaagccc
    12241 gcgctgtact gcgcgctatt gccaccgcgc atcatgcaca ggagactttc tgatggctga
    12301 cattctgctg ctcgataata tcgactcttt tacgtacaac ctggcagatc agttgcgcag
    12361 caatgggcat aatgtggtga tttaccgcaa ccatattccg gcgcagacct taattgaacg
    12421 cctggcgacg atgagcaatc cggtgctgat gctttctcct ggccccggtg tgccgagcga
    12481 agccggttgt atgccggaac tcctcacccg cttgcgtggc aagctgccca ttattggcat
    12541 ttgcctcgga catcaggcga ttgtcgaagc ttacgggggc tatgtcggtc aggcgggcga
    12601 aattctccac ggtaaagcct ccagcattga acacgacggt caggcgatgt ttgccggatt
    12661 aacaaacccg ctgccagtgg cgcgttatca ctcgctggtt ggcagtaaca ttccggccgg
    12721 tttaaccatc aacgcccatt ttaatggcat ggtgatggca gtacgtcacg atgcggatcg
    12781 cgtttgtgga ttccagttcc atccggaatc cattcttact acccagggcg ctcgcctgct
    12841 ggaacaaacg ctggcctggg cgcagcggaa actagagcca accaacacgc tgcaaccgat
    12901 tctggaaaaa ctgtatcagg cgcagacgct tagccagcaa gaaagccacc agctgttttc
    12961 agcagtggta cgtggcgaac tgaaaccgga acaactggcg gcggcgctgg tgagcatgaa
    13021 aattcgcggc gagcacccga acgagatcgc cggagcagca accgcgttac tggaaaacgc
    13081 cgcgccgttc ccgcgcccgg attatctgtt tgccgatatc gtcggcaccg gtggtgacgg
    13141 cagtaacagc atcaatattt ccaccgccag tgcgtttgtc gccgcggcct gtgggctgaa
    13201 agtggcgaaa cacggcaacc gtagcgtctc cagtaaatct ggttcgtccg atctgctggc
    13261 ggcgttcggt attaatcttg atatgaatgc cgataaatcg cgccaagcgc tggatgagtt
    13321 aggcatatgt ttcctctttg cgccgaaata tcacaccgga tttcgccatg cgatgccggt
    13381 tcgccagcaa ctgaaaaccc gcactctgtt caacgtgctg ggaccattga ttaacccggc
    13441 gcatccgccg ctggcgttaa ttggtgttta tagtccggaa ctggtgctgc cgattgccga
    13501 aaccttgcgc gtgctggggt atcaacgcgc ggcggtagtg cacagcggcg gtatggatga
    13561 agtttcatta cacgcgccga caatcgttgc cgaactgcat gacggtgaaa ttaagagcta
    13621 tcagctaact gcagaagatt ttggcctgac accctaccac caggagcaac tggcaggcgg
    13681 aacaccggaa gaaaaccgtg acattttaac acgcttgtta caaggtaaag gcgacgccgc
    13741 tcacgaagca gccgtcgcgg cgaatgtcgc catgttaatg cgcctgcatg gccatgaaga
    13801 tctgcaagcc aatgcgcaaa ccgttcttga ggtactgcgc agtggttccg cttacgacag
    13861 agttaccgca ctggcggcac gagggtaaat gatgcaaacc gttttagcga aaatcgtcgc
    13921 agacaaggcg atttgggtag aaacccgcaa acagcagcaa ccgctggcca gttttcagaa
    13981 tgaggttcag ccgagcacgc gacattttta tgatgcgcta cagggtgcac gcacggcgtt
    14041 tattctggag tgcaagaaag cgtcgccgtc aaaaggcgtg atccgtgatg atttcgatcc
    14101 ggcacgcatt gccgccattt ataaacatta cgcttcggca atttcggtgc tgactgatga
    14161 gaaatatttt caggggagct ttgatttcct ccccatcgtc agccaaatcg ccccgcagcc
    14221 gattttatgt aaagacttca ttatcgaccc ttaccagatc tatctggcgc gctattacca
    14281 ggccgatgcc tgcttattaa tgctttcagt actggatgac gaccaatatc gccagcttgc
    14341 agccgtcgct cacagtctgg agatgggggg gctgaccgaa gtcagtaatg aagaggaact
    14401 ggagcgcgcc attgcattag gggcaaaggt cgttggcatc aacaaccgcg atctgcgtga
    14461 tttgtcgatt gatctcaacc gtacccgcga gcttgcgccg aaactggggc acaacgtaac
    14521 ggtaatcagc gaatccggca tcaatactta cgctcaggtg cgcgagttaa gccacttcgc
    14581 taacggtttt ctgattggtt cggcgttgat ggcccatgac gatttgcacg ccgccgtgcg
    14641 ccgggtgttg ctgggtgaga ataaagtatg tggcctgacg cgtgggcaag atgctaaagc
    14701 agcttatgac gcgggcgcga tttacggtgg gttgattttt gtcgcgacat caccgcgttg
    14761 cgtcaacgtt gaacaggcgc aggaagtgat ggctgcggca ccgttgcagt atgttggcgt
    14821 gttccgcaat cacgatattg ccgatgtggt ggacaaagct aaggtgttat cgctggcggc
    14881 agtgcaactg catggtaatg aagatcagct gtatatcgat acgctgcgtg aagctctgcc
    14941 aacacatgtt gccatctgga aagcattaag cgtcggtgaa accctgcccg cccgcgagtt
    15001 tcagcacgtt gataaatatg ttttagacaa cggccagggt ggaagcgggc aacgttttga
    15061 ctggtcacta ttaaatggtc aatcgcttgg caacgttctg ctggcggggg gcttaggcgc
    15121 agataactgc gtggaagcgg cacaaaccgg ctgcgccgga cttgatttta attctgctgt
    15181 agagtcgcaa ccgggcatca aagacgcacg tcttttggcc tcggttttcc agacgctgcg
    15241 cgcatattaa ggaaaggaac aatgacaaca ttacttaacc cctattttgg tgagtttggc
    15301 ggcatgtacg tgccacaaat cctgatgcct gctctgcgcc agctggaaga agcttttgtc
    15361 agcgcgcaaa aagatcctga atttcaggct cagttcaacg acctgctgaa aaactatgcc
    15421 gggcgtccaa ccgcgctgac caaatgccag aacattacgg ctgggacgaa caccacgctg
    15481 tatctgaagc gcgaagattt gctgcacggc ggcgcgcata aaactaacca ggtgctcggt
    15541 caggctttac tggcgaagcg gatgggtaaa accgaaatca tcgccgaaac cggtgccggt
    15601 cagcatggcg tggcgtcggc ccttgccagc gccctgctcg gcctgaaatg ccgtatttat
    15661 atgggtgcca aagacgttga acgccagtcg cctaacgttt ttcgtatgcg cttaatgggt
    15721 gcggaagtga tcccggtaca tagcggttcc gcgacgctga aagatgcctg taacgaggcg
    15781 ctgcgcgact ggtccggcag ttatgaaacc gcgcactata tgctgggcac cgcagctggc
    15841 ccacatcctt atccgaccat tgtgtgtgag tttcagcgga tgattggcga agaaacgaaa
    15901 gcgcagattc tggaaagaga aggtcgcctg ccggatgccg ttatcgcctg tgttggcggc
    15961 ggttcgaatg ccatcggcat gtttgcagat ttcatcaacg aaaccaacgt cggcctgatt
    16021 ggtgtggagc cgggtggtca cggtatcgaa actggcgagc acggcgcacc gctaaaacat
    16081 ggtcgcgtgg gcatttattt cggtatgaaa gcgccgatga tgcaaaccga agacgggcag
    16141 attgaagaat cttactccat ctccgccgga ctggatttcc cgtctgtcgg cccacaacac
    16201 gcgtatctta acagcactgg acgcgctgat tacgtgtcta ttaccgatga tgaagccctt
    16261 gaagccttca aaacgctgtg cctgcacgaa gggattatcc cggcgctgga gtcttcccac
    16321 gccctggccc atgcgctgaa aatgatgcgc gaaaccccgg aaaaagagca gctactggtg
    16381 gttaaccttt ccggtcgcgg cgataaagac atcttcaccg ttcacgatat tttgaaagca
    16441 cgaggggaaa tctgatggaa cgctacgaat ctctgtttgc ccagttgaag gagcgcaaag
    16501 aaggcgcatt cgttcctttc gtcacgctca gggatccggg cattgagcag tcattgaaaa
    16561 ttatcgatac gctaattgaa gccggtgctg acgcgctgga gttaggtatc cccttctccg
    16621 acccactggc ggatggcccg accattcaaa acgccactct gcgcgccttt gcggcaggtg
    16681 tgactccggc acaatgtttt gaaatgctgg cactgattcg ccagaaacac ccgaccattc
    16741 ccattggcct gttgatgtat gccaatctgg tgtttaacaa aggcattgat gagttttatg
    16801 cccagtgcga gaaagtcggc gtcgattcgg tgctggttgc cgatgtgcca gttgaagagt
    16861 ccgcgccctt ccgccaggcc gcgttgcgcc ataatgtcgc acctatcttc atctgcccgc
    16921 caaatgccga tgacgacctg ctgcgccaga tagcctctta cggtcgtggt tacacctatt
    16981 tgctgtcacg agcgggcgtg accggcgcag aaaaccgcgc cgcgttaccc ctcaatcatc
    17041 tggttgcgaa gctgaaagag tacaacgctg cacctccatt gcaggggttt ggtatttccg
    17101 ccccggatca ggtaaaagca gcgattgatg caggagctgc gggcgcgatt tctggttcgg
    17161 ccattgttaa aatcatcgag caacatatta atgagccaga gaaaatgctg gcggcactga
    17221 aagtttttgt acaaccgatg aaagcggcga cgcgcagtta atcccacagc cgccagttcc
    17281 gttggcggca ttttaacttt ctttaatgaa gccggaaaaa tcctaaattc atttaatatt
    17341 tatcttttta ccgcttcgct tacccctgtc gaacgtcaac ttacgtcatt tttccgccca
    17401 acagtaatat aatcaaacaa attaatcccg caacataaca ccagtaaaat caataatttt
    17461 ctctaagtca cttattcctc aga
//
LOCUS       DADMJB010000084        17364 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.084, whole genome shotgun sequence.
ACCESSION   DADMJB010000084 DADMJB010000000
VERSION     DADMJB010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17364
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.084"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(254..535)
                     /locus_tag="JN078_002445"
     CDS             complement(254..535)
                     /locus_tag="JN078_002445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YehE family protein"
                     /protein_id="HAY9041619.1"
                     /translation="MNKYWLSGIIFLAYGLASPAFSSETATLAINGRISPPTCSMAMV
                     NGQPQQHCGQLTYNVDTRHLFSSPVKGVTTEVVVAGSDSKRRIVLNRYD"
     gene            complement(798..1907)
                     /gene="apbC"
                     /locus_tag="JN078_002446"
     CDS             complement(798..1907)
                     /gene="apbC"
                     /locus_tag="JN078_002446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310946.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HAY9041620.1"
                     /translation="MNEQSQAKSPEALRAMVAGTLANFQHPTLKHNLTTLKALHHVAW
                     MDDTLHVELVMPFVWHSAFEELKEQCSAELLRITGAKAIDWKLSHNIATLKRVKNQPG
                     INGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQ
                     RPTSPDGTHMAPIMSHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDY
                     LVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVE
                     NMSVHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDKGTPTVISRP
                     ESEFTAIYRQLADRVAAQLYWQGEVIPGEISFRAV"
     gene            2039..4072
                     /gene="metG"
                     /locus_tag="JN078_002447"
     CDS             2039..4072
                     /gene="metG"
                     /locus_tag="JN078_002447"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HAY9041621.1"
                     /translation="MTQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGH
                     EVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEE
                     NRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCE
                     VCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANK
                     MQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSV
                     SFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKM
                     SKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVN
                     LASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALAD
                     LANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN
                     TELTWDGIQQPLLGHKVNPFKALYNRIDMRQVEALVEASKEEVKAAAAPVTGPLADDP
                     IQETITFDDFAKVDLRVALIENAEFVEGSDKLLRLTLDLGGEKRNVFSGIRSAYPDPQ
                     ALIGRHTIMVANLAPRKMRFGISEGMVMAAGPGGKDIFLLSPDAGAKPGHQVK"
     gene            4213..8007
                     /locus_tag="JN078_002448"
                     /pseudo
     CDS             4213..8007
                     /locus_tag="JN078_002448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001215568.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="WGR and DUF4132 domain-containing protein"
     gene            8017..11649
                     /locus_tag="JN078_002449"
     CDS             8017..11649
                     /locus_tag="JN078_002449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4132 domain-containing protein"
                     /protein_id="HAY9041622.1"
                     /translation="MDKELPWLADNAQLELKYKKGKTPLSHRRWPGEPVSVITGSLIQ
                     TLGDELLQKAEKKKNIVWRYENFSLEWQSAITQAINLIGEHKPSIPARTMAALACIAQ
                     NDSQQLLDEIVQQEGLEYATEVVIARQFIARCYESDPLVVTLQYQDEDYGYGYRSETY
                     NEFDLRLRKHLSLAEESCWQRCADKLIAALPGITKVRRPFIALILPEKPEIANELVGL
                     ECPRTHFHSKEWLKVVANDPTAVRKLEHYWSQDIFSDREASYMSHENHFGYAACAALL
                     REQGLAAIPRLAMYAHKEDCGSLLVQINHPQVIRTLLLVADKNKPSLQRVAKYHKNFP
                     HATLAALAELLALKEPPARPGNPIIEDKKLPAQQKARDEYWRTLLQTLMASQPQLAEE
                     VMQWLSTQPQSVLKSYLSAPPKPVIDGTDNSNLPEILVSPPWRSKKKMTAPRLDLAPL
                     ELTPQVYWQPGEQERLAATEPARYFSTESLAQRMEQKSGRVVLQELGFGDDVWLFLNY
                     ILPGKLDAARNSLIVQWHYYQGRVEEILNGWNSPEAQLAEQALRSGHIEALINIWEND
                     NYSRYRPEKSVWNLYLLAQLPREMALTFWLRINEKKHLFAGEDYFLSILGLDALPGLL
                     LAFSHRPKETFPLILNFGATELALPVARVWHRFAGQRNLARQWILQWPEHTATALIPL
                     VFVKPCDNSEAALFALRLLYEQGHSELLQTVANRWDRADMWPALEKILTQNPMEIYPA
                     RIPKAPDFWHPQMWSRPRLITNNQTVTNDALEIIGEMLRFTQGGRFYSGLEQLKTFCQ
                     PQTLAAFAWDLFTAWQQAGAPAKDNWAFLALSLFGDESTARDLTTQILAWPQEGKSAR
                     AVSGLNILTLMNNDMALIQLHHISQRAKSRPLRDNAAEFLQVVAENRGLSQEELADRL
                     VPTLGLDDPQALSFDFGPRQFTVRFDENLNPVIFDQQNVRQKSVPRLRADDDQLKAPE
                     ALARLKGLKKDATQVSKNLLPRLETALRTTRRWSLADFHSLFVNHPFTRLVTQRLIWG
                     VYPANEPRCLLKAFRVAAEGEFCNAQDEPIDLPADALIGIAHPLEMTAEMRSEFAQLF
                     ADYEIMPPFRQLSRRTVLLTPDESTSNSLTRWEGKSATVGQLMGMRYKGWESGYEDAF
                     VYNLGEYRLVLKFSPGFNHYNVDSKALMSFRSLRVYRDNKSVTFAELDVFDLSEALSA
                     PDVIFH"
     gene            11710..12027
                     /locus_tag="JN078_002450"
     CDS             11710..12027
                     /locus_tag="JN078_002450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041623.1"
                     /translation="MIVQKELVAIYDYEVPVPEDPFSFRLEIHKCSELFTGSVYRLER
                     FRLRPTFHQRDREDADPLINDALIYIRDECIDERKLRGESPETVIAIFNRELQNIFNQ
                     EIE"
     gene            12334..13422
                     /locus_tag="JN078_002451"
     CDS             12334..13422
                     /locus_tag="JN078_002451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416623.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HAY9041624.1"
                     /translation="MSPQNNHLQRPPAAVLYADELAKLKQNDNAPCPPGWQLSLPAAR
                     AFILGDEAQNISRKVVISPSAVERMLVTLATGRGLMLVGEPGTAKSLLSELLATAISG
                     DAGLTIQGGASTTEDQIKYGWNYALLINHGPSTEALVPAPLYQGMRDGKIVRFEEITR
                     TPLEVQDCLLGMLSDRVMTVPELTGEASQLYAREGFNIIATANTRDRGVNEMSAALKR
                     RFDFETVFPIMDFAQELELVASASARLLAHSGIPHKVPDAVLELLVRTFRDLRANGEK
                     KTSMDTLTAIMSTAEAVNVAHAVGVRAWFLANRAGEPADLVECIAGTIVKDNEEDRAR
                     LRRYFEQRVATHKEAHWQAYYQARHRLP"
     gene            13433..15712
                     /locus_tag="JN078_002452"
     CDS             13433..15712
                     /locus_tag="JN078_002452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041625.1"
                     /translation="MSEPLIVGIRHHSPACARLVKSLIESQRPRYVLIEGPADFNDRV
                     DELFLAHQLPVAIYSYCQYQDGAAPGRGAWTPFAEFSPEWQALQAARRIQAQTYFIDL
                     PCWAQSEEEDDSPDTQDESQALLLRATRMDNSDTLWDHLFEDESQQTALPSALAHYFA
                     QLRGDASGDALNRQREAFMARWIGWAMQQNNGDVLVVCGGWHAPALAKMWRECPQKIN
                     KPELPSLADAVTGCYLTPYSEKRLDVLAGYLSGMPAPVWQNWCWQWGLQKAGEQLLKT
                     ILTRLRQHKLPASTADMAAAHLHAMALAQLRGHTLPLRTDWLDAIAGSLIKEALNAPL
                     PWSYRGVIHPDTDPILLTLIDTLAGDGFGKLAPSTPQPPLPKDVTCELERTAISLPAE
                     LTLNRFTPDGLAQSQVLHRLAILEIPGIVRQQGSTLTLAGNGEERWKLTRPLSQHAAL
                     IEAACFGATLQEAARNKLEADMLDAGGIGSITTCLSQAALAGLASFSQQLLEQLTLLI
                     AQENQFAEMGQALEVLYALWRLDEISGMQGAQILQTTLCATIDRTLWLCESNGRPDEK
                     EFHAHLHSWQALCHILRDLHSGVNLPGVSLSAAVALLERRSQAIHAPALDRGAALGAL
                     MRLEHPNASAEAALTMLAQLSPAQSGEALHGLLALARHQLACQPAFIAGFSSHLNQLS
                     EADFINALPDLRAAMAWLPPRERGTLAHQVLEHYQLAQLPVSALQMPLHCPPQAIAHH
                     QQLEQQALASLQNWGVFHV"
     gene            15705..16841
                     /locus_tag="JN078_002453"
     CDS             15705..16841
                     /locus_tag="JN078_002453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HAY9041626.1"
                     /translation="MSELNDLLTTRELQRWRLILGEAAETTLCGLDDNARQIDHALEW
                     LYGRDPERLQRGERSGGLGGSNLTTPEWINSIHTLFPQQVIERLESDAVLRYGIEDVV
                     TNLDVLERMQPSESLLRAVLHTKHLMNPEVLAAARRIVCQVVEEIMARLAKEVRQAFS
                     GVRDRRRRSFIPLARNFDFKSTLRANLQHWHPQHGKLYIESPRFNSRIKRQSEQWQLV
                     LLVDQSGSMVDSVIPSAVMAACLWQLPGIRTHLVAFDTSVVDLTADVADPVELLMKVQ
                     LGGGTNIASAVEYGRQLIEQPAKSVIILVSDFYEGGSSSLLTHQVKKCVQSGIKVLGL
                     AALDSTATPCYDRDTAQALVNVGAQIAAMTPGELASWLAENLQS"
     gene            16838..>17364
                     /locus_tag="JN078_002454"
     CDS             16838..>17364
                     /locus_tag="JN078_002454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041627.1"
                     /translation="MNSLRPELLELTPQALTALSNAGFVKRSLKELENGNVPEISHEN
                     GALIATFSDGVRTQLANGQALKEAQCSCGASGMCRHRVMLVLSYQRLCATAQPTGKEE
                     EWDPAIWLEELATLPDATRKRAQALVAKGITIELFCAPGEIPSARLPMSDVRFYSRSS
                     IRFARCDCIEGTLCE"
BASE COUNT         4392 a         4474 c         4393 g         4105 t
ORIGIN      
        1 gtctgtatct cttggaaaca aatttctcac atcaaaaaag ttgccgcaat gtaaacacat
       61 tgttttattg atttaaaaca aattaaccat tgcaatataa atacaaaaaa tatttaagag
      121 tattaactat ttatcgcatc tatcaattaa tgtagattta tgtaaatggt attgttgata
      181 tcaataaaaa agccgaaatc atttatataa atgatttcgg ctttctaaat gcaattaaaa
      241 tcaggttgcc aaattaatcg tagcgattta acacgattcg acgtttgcta tcgctacctg
      301 caacaaccac ttctgtcgtt acacctttga cgggcgaaga aaacagatga cgggtgtcaa
      361 cattatacgt taactgacca caatgctgtt gaggttgacc attaaccata gccatactgc
      421 atgttggggg actgatcctg ccattaatcg ctaatgtggc agtctctgaa gagaatgcgg
      481 gagaagccaa tccataggca agaaaaataa ttcctgacag ccaatactta ttcattgaac
      541 gttatccctg tagtaaaggt tatgcctgga tagaatgagt gcataacaaa ctatagctgt
      601 acatccacta cacagccacg aaggatgata atgaagcatt gcctgtatga tcaatcgact
      661 ttgtagagtt tcggacgaag gtccgcagaa tattcgcagt attaaataag tgttcattaa
      721 tgcggcaaaa actaatacac cgcatcaatg taacatctct gcggtgtatg aagaataacc
      781 agaatggtta ataggcgtta gaccgcgcgg aaggaaatct cgcctggaat gacttcaccc
      841 tgccagtaga gctgagctgc aacgcggtca gccagctggc ggtagatagc ggtaaattcg
      901 ctctccggac ggctgataac cgttggcgta cctttatcga gatcctcacg taaggagatg
      961 tgtaacggca tctgccccag cagctgtgta tggtattttt cagccagttt ctctgcacca
     1021 ccggtaccga aaatcggttc atggtgacca cagttactgc aaatatgcac actcatgttc
     1081 tcgacaatac cgagcaccgg aacctcgact ttctcgaaca tcacaatgcc ttttttcgca
     1141 tcgatcagcg cgatgtcctg cggggtggtg accacgactg caccggttac tggaatgttt
     1201 tgcgccagcg tcaattgaat gtcaccggtg cctggcggca tatcaagcac cagatagtcg
     1261 agatccggcc acaaggtttc ctgcaacatc tgcattaacg ccttgctcgc catcggtcca
     1321 cgccacacca tcgcattgtc gtcagtgacc agataaccaa ttgaattggt tgccaggcca
     1381 tgagacataa tcggtgccat atgggtaccg tccggcgaag ttggacgctg attttctgcg
     1441 cccaacattg ttgggattga tgggccgtag atatcggcgt ccagaatgcc gactttcgcc
     1501 ccttctgccg ccagcgccag tgccaggttt accgccgtgg acgatttacc cacgccgcct
     1561 ttaccggaac tcaccgcgat aatgttcttc acaccgttaa ttcccggctg attcttcacg
     1621 cgtttcagag tggctatgtt atgcgacagt ttccagtcga tagctttcgc cccggtgatg
     1681 cgcagcagtt cggcgctaca ttgctctttt aactcttcga acgcactatg ccagacaaac
     1741 ggcataacca gttccacatg caacgtgtcg tccatccagg cgacatggtg caacgctttc
     1801 agcgtggtga ggttatgctt cagggttggg tgctgaaaat tggccagtgt cccggcgacc
     1861 attgcgcgca aggcttctgg tgatttggcc tgggattgtt cgttcatccc gactcctttt
     1921 ttgtatagat aaaccatcag ttgatagttt acctgaagaa tatagagaag tacttactta
     1981 acattttccc atttggtact atctaacccc ttttcactat taagaagtaa tgcctactat
     2041 gactcaagtc gcgaagaaaa ttctggtgac gtgcgcactg ccgtacgcta acggctcaat
     2101 ccacctcggc catatgctgg agcacatcca ggctgatgtc tgggtccgtt accagcgaat
     2161 gcgcggccac gaggtcaact tcatctgcgc cgacgatgcc cacggtacac cgatcatgct
     2221 gaaagctcag cagcttggta tcaccccgga gcagatgatt ggcgaaatga gtcaggagca
     2281 tcagactgat ttcgcaggct ttaacatcag ctatgacaac tatcactcga cgcacagcga
     2341 agagaaccgc cagttgtcag aacttatcta ctctcgcctg aaagaaaacg gttttattaa
     2401 aaaccgcacc atctctcagc tgtacgatcc ggaaaaaggc atgttcctgc cggaccgttt
     2461 tgtgaaaggc acctgcccga aatgtaaatc cccggatcaa tacggcgata actgcgaagt
     2521 ctgcggcgcg acctacagcc cgactgaact gatcgagccg aaatcggtgg tttctggcgc
     2581 tacgccggta atgcgtgatt ctgaacactt cttctttgat ctgccctctt tcagcgaaat
     2641 gttgcaggca tggacccgca gcggtgcgtt gcaggagcag gtggcaaata aaatgcagga
     2701 gtggtttgaa tctggcctgc aacagtggga tatctcccgc gacgcccctt acttcggttt
     2761 tgaaattccg aacgcgccgg gcaaatattt ctacgtctgg ctggacgcac cgattggcta
     2821 catgggttct ttcaagaatc tgtgcgacaa gcgcggcgac agcgtaagct tcgatgaata
     2881 ctggaagaaa gactccaccg ccgagctgta ccacttcatc ggtaaagata ttgtttactt
     2941 ccacagcctg ttctggcctg ccatgctgga aggcagcaac ttccgcaagc cgtccaacct
     3001 gtttgttcat ggctatgtga cggtgaacgg cgcaaagatg tccaagtctc gcggcacctt
     3061 tattaaagcc agcacctggc tgaatcattt tgacgcagac agcctgcgtt actactacac
     3121 tgcgaaactc tcttcgcgca ttgatgatat cgatctcaac ctggaagatt tcgttcagcg
     3181 tgtgaatgcc gatatcgtta acaaagtggt taacctggcc tcccgtaatg cgggctttat
     3241 caacaagcgt tttgacggcg tgctggcaag cgaactggct gacccgcagt tgtacaaaac
     3301 cttcactgat gccgctgaag tgattggtga agcgtgggaa agccgtgaat ttggtaaagc
     3361 cgtgcgcgaa atcatggcgc tggctgatct ggctaaccgc tatgtcgatg aacaggctcc
     3421 gtgggtggtg gcgaaacagg aaggccgcga tgccgacctg caggcaattt gctcaatggg
     3481 catcaacctg ttccgcgtgc tgatgactta cctgaagccg gtactgccga aactgaccga
     3541 gcgtgcagaa gcattcctca atacggaact gacctgggat ggtatccagc aaccgctgct
     3601 gggccacaaa gtgaatccgt tcaaggcgct gtataaccgc atcgatatga ggcaggttga
     3661 agcactggtg gaagcctcta aagaagaagt aaaagccgct gccgcgccgg taactggccc
     3721 gctggcagat gatccgattc aggaaaccat cacctttgac gacttcgcta aagttgacct
     3781 gcgcgtggcg ctgattgaaa acgcagagtt tgttgaaggt tctgacaaac tgctgcgcct
     3841 gacgctggat ctcggcggtg aaaaacgcaa tgtcttctcc ggtattcgtt ctgcttaccc
     3901 ggatccgcag gcactgattg gtcgtcacac cattatggtg gctaacctgg caccacgtaa
     3961 aatgcgcttc ggtatctctg aaggcatggt gatggctgcc ggtcctggcg ggaaagatat
     4021 tttcctgcta agcccggatg ccggtgctaa accgggtcat caggtgaaat aatccccctt
     4081 caaggcgctg catcgacagc gccttttctt tataaattcc taaagttgtt ttcttgcgat
     4141 tttgtctctc tctaacccgc ataaatactg gtagcatctg cattcaactg gataaaatta
     4201 cagggatgca gaatgagaca ctttatctat caggacgaaa aatcacataa attcagggca
     4261 gttgagcaac agggaaacga gttgcatatc agttggggaa aagttggcac caaagggcaa
     4321 agccagataa aaagtttttc agatgctgcg gcagcggcaa aagcggagct taagctgatt
     4381 gcggagaagg tgaagaaggg gtatgtggag caagcgaagg ataattcttt gcaaccttcc
     4441 caaacggtaa cgggctctct caaggtagcg gacttatcca ccattattca ggaacaaccc
     4501 tctttcgtag cagaaacccg tgcgcctgac aaaaatacag atgctgtttt accgtggctg
     4561 gcgaaagata ttgctgtcgt ttttccgccc gaagttgtac acaccacgtt aagtcatcgc
     4621 cgctttcccg gagttcctgt tcagcaagca gacaaattgc cccaattacg tcgcttagcc
     4681 tgtagtgtgt cgcaacggga taataaaaca gccacatttg acttcagcgc ctgttcttta
     4741 gaatggcaaa acaccgtcgc ccaggcgatc agtcagatcg acggcctgaa aacaacacag
     4801 ttaccatcac cagtaatggc tgtactcacg gcacttgaaa tgaaatgcac aagatataaa
     4861 gtgcgtgagg atgttatgga tcagatcgtc caggaaggcg gtctggaata tgctactgat
     4921 gtaataatac accttcaaca gattgatatt gaatgggatt atgcgaataa tgtcattatt
     4981 attctgccgt ctggcattgc acctagctac ttggagcaat attccagatt tgaatgacgc
     5041 ctacgtaaac atttatcact gacggaagag tctctctggc aaaaatgtgc acaaaaactt
     5101 attgccgcaa ttccacatat tccagaatgg cggcaaccat taattgcttt gttattaccc
     5161 gaaaaaccag aaattgcaca tgaaattgcc cagcgtctac tggggcaaaa aaaattaccc
     5221 tcgcttgagt ggttaaaaat agtggcgact gatgagcaca ttcttgcctc attagaaaaa
     5281 tatcacgaac catatgccat ttttgatgat tactattgtg gtgcgatatg gtcagccacc
     5341 gtattacagg agcaaggtgt tgcagccctg ccccgatttg ctccctatgc cgcaagtgac
     5401 tactgcgccg atgtgttgcg tcatatcaat catccgttcg cattgacact gcttatacgt
     5461 gtagccgggc aaactaaacg ctgtcacgat cggatgacga aagccattgc tgcgttccca
     5521 catgcagcaa tggcggcact gacggaactt cttgggcaaa aagaagagaa cagttggcgc
     5581 attatgctaa tgacaatgct tatctcacaa ccagcactgg cagaacaggt cattccctgg
     5641 ctctcgacac ccgcagttgc cgtactgaaa tcatgccagc aacaactgac acagccctca
     5701 aaccatgcca gcgccgatct actgccagcc gtagtagtct cccctccctg gctttcgaaa
     5761 aagaaaaaat cgccgattcc ggtgctggat ttagcgccat taggcattga gccaatctgt
     5821 tatctgacag aagaaatcag taatcaactt ttggcgaaat atatctggta ttcaaaacac
     5881 atcacggtta gccatgaaga aagtactacc aacctgttgg caaggatggg ttttcaacga
     5941 cggatcgctg gtacatatat taaagctccc gaagcggtag ttgaggcatg gctaaatgaa
     6001 gattattcaa ccttactaag tgaatttaag gtgtttcatt cacctaccgg gcattattgg
     6061 cagttgggga ttttgacaac attgccgctg gagaaagcag taaaagcatg gaatgccctt
     6121 accctatctc cacataccga taccgaatac tccatgttac attttggact caaagggtta
     6181 cctgggttag taaactcact tgcacgctat ccacaagaag ccttgcccat cacgaattac
     6241 ttcgcagcga gtgagctggc tcctgccgtc gcccgtgcct tcaacaaact gaaaacgcta
     6301 cgcgaaaacg cccgtagctg gctgttgaaa tacccggaac atgcccttac cggcctgctg
     6361 cctgcggcgc tcggcaaagc cggtgaagca caggataacg cccgcgctgc cttgcgtatg
     6421 cttaccgaaa acggtcatca gccattactg caagaaatcg cccgacgtta taaccagccg
     6481 gaagtaaccg atgcggtgaa cgctctgctt gcgctcgatc ccttagataa tcacccgaca
     6541 aaaatcccca ctcttccggc cttttatcag ccatcgctct ggacgcgccc ggtattaaaa
     6601 gcaaatgccc aatcactgcc agatagcgcc ctcctccacc tcggtgaaat gctccgcttc
     6661 cctcaggaag aggctctgta tccgggatta ttgcaggtga aagacgtctg ttccgccgac
     6721 tcactggcgg gatttgcctg ggatctgttt accgcctggc agaccgctgg cgcgccgtcg
     6781 aaagagagtt gggcgttcac tgcgttaggc gttctcggta acgatgacac cgcccgcaaa
     6841 ctgacgccat taatacgcgc ctggcctggt gaatcccagc ataaacgcgc caccgttggg
     6901 ttggatattc tcgctgctat cggtagtgat atcgccctta tgcagcttaa cggcatcgcc
     6961 cagaaactga aattcaaagc attacaggag cgggcaaaag aaaaaattgc cgacattgcc
     7021 gagagccgcg aactcacggt ggcggagctt gaagatcggt tagcaccgga tctcggtctg
     7081 gatgataacg gttcgctgct gctggatttt ggcccacggc agttcaccgt cagctttgat
     7141 gaaaccttaa aaccgtttgt gcgtgatgtt tccggcagcc gcctgaaaga cctgcccaaa
     7201 ccgaacaaaa gcgatgatga aacgcgggcg aacgatgcgg ttaaccgcta caaattgctg
     7261 aaaaaagatg cgcgtaccat cgccgcccag caggtagcaa ggctggaatc cgccatgtgc
     7321 ctgcgccgcc gctggtcgct ggaaaacttc cagctcttcc tggttgagca tccgctggtt
     7381 cgtcacttaa cccgccgtct gatttggggc gtttatagcg ccgaaaacca gctactggct
     7441 tgctttcgcg tagcagaaga taacagctcc agcaccgctg acgatgatct tttcaccctg
     7501 ccggaaggcg atatctctat cggcactcct cacgttctgg aaatatcacc aacggatgct
     7561 gccgcctttg gtcagctttt tgccgactac gaactgctac caccgttccg ccagctcgac
     7621 cgtaacagct acgccctgac agaagccgag cgcaatgcca gtgaactgac ccgctgggca
     7681 ggcagaaaat gcccgagtgg tcgggtcatg gggctggcga ataaaggctg gataaagggc
     7741 gaaccacagg atggaggctg gatcggatgg atgatcaaac ctttgggtcg ctggtcgtta
     7801 atcatggaaa tcgatgaagg ctttgcggta ggcatgtcgc cagccgaact cagcgctgag
     7861 cagctcttaa gcaagctgtg gctatgggaa ggcaaagcag aaagatatgg ctgggggagt
     7921 aattcaacac aggaagcgca gttctccgta atcgatgcca tcaccgccag cgagctaatt
     7981 aacgatattg aagccctgtt tgaataagga aagagcatgg acaaggaatt accgtggctg
     8041 gcggataacg cccaactgga actgaaatat aaaaaaggca aaacgccgct cagtcatcgt
     8101 cgctggccgg gcgaaccagt gtccgttatc actggaagtc tcatccagac attgggtgat
     8161 gaattgctac aaaaagctga gaagaaaaaa aacattgtct ggcgttatga gaatttttca
     8221 ctggagtggc agtccgccat cacgcaggcc atcaacttga tcggcgaaca caaaccctca
     8281 atcccggccc ggacaatggc ggcgctagcc tgtatcgcgc aaaatgacag ccaacagttg
     8341 ctcgacgaaa tcgtccaaca agaggggctg gaatatgcga ctgaggtggt gattgcacgc
     8401 cagtttattg cgcggtgtta tgagagtgat cctctggtag tgacattgca gtatcaggac
     8461 gaggattatg gctatggtta tcgctcagaa acctataacg aattcgatct ccgactgcgt
     8521 aagcatctct ctctggcaga ggaaagctgc tggcagcgtt gcgccgacaa actcattgcc
     8581 gcactaccag gaataaccaa agttcgccgc ccttttattg cgctgatcct cccggaaaaa
     8641 ccagaaatag ccaatgagtt ggtaggcctt gaatgcccgc gaactcattt tcattctaag
     8701 gagtggttaa aagttgttgc taatgacccc acagcggtga gaaaactcga acactactgg
     8761 agccaggata tatttagcga tcgagaagcc agctacatgt cgcatgaaaa ccacttcggc
     8821 tacgcggcct gcgccgccct tttgcgcgaa caaggactgg cagccattcc gcgcctcgcg
     8881 atgtatgccc ataaagaaga ttgcggcagt ctgctggtac aaattaacca tccgcaagtc
     8941 atccgcacct tgctactggt ggctgataaa aacaaaccca gcctgcaacg tgtagctaaa
     9001 taccataaaa acttccccca tgcgacgctc gccgcactgg cagaactgct ggcgttaaaa
     9061 gaaccaccag cccgcccagg taatccaatc atcgaagaca aaaagctgcc tgcacagcaa
     9121 aaagcacgcg atgaatactg gcgtacgctg ttacaaacgc tgatggcatc gcagccacaa
     9181 ctggcagaag aggtgatgca gtggttaagt actcaacccc agtcagtgct gaagagttat
     9241 ttatcggcac cgcccaaacc ggttattgat ggcaccgata acagcaatct gccagaaatc
     9301 ctcgtttcac caccgtggcg tagtaagaaa aaaatgacag ctccacgtct tgatttggca
     9361 ccgctcgaat taactccgca agtttactgg caaccaggcg aacaagagag gcttgccgcc
     9421 actgagcctg cccgttattt cagcacggaa tctcttgcgc aacgcatgga acaaaaaagt
     9481 ggacgagttg tattacagga actgggtttt ggggatgatg tatggctgtt tctgaattat
     9541 atactccccg gaaaactgga tgctgcacgc aattcactca ttgttcagtg gcattactac
     9601 caggggcggg ttgaagagat cctgaatggc tggaactccc cggaagcaca attagcagaa
     9661 caggcgctcc gcagcggtca catagaagcg ttaattaaca tatgggaaaa tgacaactac
     9721 tcacgttatc gtccggaaaa gagtgtctgg aacctgtatt tattggcaca gttgccgcgt
     9781 gagatggctt tgaccttctg gctgcgtatc aatgagaaaa agcatctgtt cgcgggtgag
     9841 gactattttc tcagtatcct cggattggat gcgctaccag gtctgctgtt ggctttttca
     9901 catcgtccaa aagaaacatt tccgttaatt ttaaatttcg gcgcaacaga actggccctg
     9961 cccgttgccc gcgtctggca ccgttttgcg ggccagcgta atctggctcg ccagtggatt
    10021 ttacaatggc cggaacatac ggctactgca cttattccac tcgtctttgt taaaccctgc
    10081 gacaacagcg aagcggcatt atttgccctt cgtttactgt atgaacaagg acatagtgaa
    10141 ttactgcaaa cggttgcaaa ccgctgggat cgcgctgata tgtggccagc cctggaaaaa
    10201 atacttaccc agaacccgat ggaaatttac ccggcacgca ttccaaaagc ccctgatttc
    10261 tggcatccgc aaatgtggtc caggccgcgc cttatcacta ataatcaaac tgttaccaat
    10321 gacgctctgg aaattatcgg cgaaatgctg cgctttaccc aggggggacg tttttatagc
    10381 gggctggaac aactgaaaac gttctgccag ccacaaacgc tggcagcttt tgcttgggat
    10441 ctcttcactg cgtggcaaca agctggtgcc cccgcaaaag acaactgggc atttctggcg
    10501 ttaagtctct ttggtgacga aagcacggca cgggatctga cgacacagat cctcgcctgg
    10561 ccacaagaag gcaaatctgc ccgtgctgtc agcggcctga acatccttac cctgatgaat
    10621 aatgatatgg cgctgataca gctgcatcat atatcgcaac gggctaaatc ccgcccctta
    10681 cgtgataacg cggcggaatt tcttcaggtg gtcgcagaaa atcgcgggct aagccaggaa
    10741 gagctagcgg acagattagt cccaaccctg ggccttgatg atccgcaggc gttgagtttt
    10801 gattttggtc cccggcagtt taccgttcgc ttcgatgaaa atctcaaccc ggttatcttt
    10861 gatcagcaaa acgttcgcca gaaaagcgtt ccccgtttgc gcgccgatga cgatcaactg
    10921 aaagcgcccg aggcactggc ccgactaaaa gggctaaaaa aagatgctac tcaggtgagc
    10981 aaaaacctgc tcccgcgtct tgaaacggcc ctacgtacca cccgacgctg gtcgctggca
    11041 gattttcatt ctctgtttgt taatcatccc tttacccgtc tggttaccca gcgattaata
    11101 tggggggttt atccggcaaa tgaaccgcgt tgtttactca aagcctttcg tgtggccgca
    11161 gagggggagt tctgcaatgc gcaagatgag ccaattgacc tgcctgcgga cgctctgatt
    11221 ggcattgccc acccgttaga aatgacagca gaaatgcgca gtgaatttgc acagcttttt
    11281 gccgattacg aaattatgcc gccttttcgc cagttgtcgc gccgcacggt gctgctcaca
    11341 cctgacgagt caaccagtaa cagcctgact cgctgggaag gtaaatccgc taccgttggg
    11401 caacttatgg gaatgcgata caaaggctgg gagtcaggct atgaggacgc atttgtctat
    11461 aacctgggtg agtaccggct ggtccttaag ttttcacccg gttttaacca ctacaatgtt
    11521 gatagcaaag cgctaatgag cttccgttct cttcgagtgt accgtgacaa taaatccgtc
    11581 acttttgccg aacttgatgt gtttgatttg agtgaggcgt taagcgcacc tgacgtcatt
    11641 ttccattaaa acacagcggg cagtgatgca actgcccgtt atcaacacga cttaccagcg
    11701 gggaaagcga tgatcgtgca aaaagagctg gttgctattt acgattatga ggtccctgta
    11761 cctgaagatc cgttttcctt cagacttgag atccataaat gctctgaatt atttacaggt
    11821 tccgtctatc gactggagcg attccggcta cgtccaacat ttcatcaacg tgatcgagaa
    11881 gatgctgacc cgctaataaa tgatgcgttg atttatataa gagatgagtg tattgatgag
    11941 cggaaattac gaggtgaatc acctgaaact gtaatagcaa tttttaatcg tgaactacag
    12001 aatatattca accaagaaat agaataatat actctaaata attcaaattg gtccgatccg
    12061 gcgcaacgtc ccaatggcct ggattataaa tctcattatc ttaattgcaa cggggtccag
    12121 ccgtggttat aattcgttcg ttggaacacg atgttgcaca ggctgtggtg ttaggcctga
    12181 aaatagtaaa taaaagaacc tgcctcacca gcaggttttt ttatttactg tgatctgctt
    12241 tccagatatt tttcgctcaa acaactaatg cgccaaacat ttattgcgcg taaaatatcg
    12301 tttatttcat taatacattt cagggatgaa tatatgtcac cgcagaataa tcatctgcag
    12361 cgtccgcctg ctgctgtgtt atacgccgat gaactggcaa aattaaaaca aaatgataac
    12421 gcaccttgcc cgcccggttg gcagttaagt ttgcctgcgg cccgtgcttt tatccttggc
    12481 gacgaagcgc aaaatatcag ccgtaaagtg gtgattagcc cctccgctgt cgaacgtatg
    12541 ttagtcactc ttgctaccgg ccgcggtttg atgttggtgg gggaaccggg taccgcaaaa
    12601 tctcttcttt ctgaattact ggcaaccgct attagcggcg atgccgggtt aaccatccag
    12661 ggcggggcat ctaccaccga agatcaaatc aagtatggct ggaactacgc cctgcttatc
    12721 aatcatggtc cgtcaacgga agcgctggtc cctgccccgc tttatcaggg aatgcgcgac
    12781 ggcaaaatcg tccgtttcga agagataacg cgtacaccgc tggaagtgca ggactgtctg
    12841 ttaggtatgc tttctgacag ggtgatgacg gtgccggaac tcactggtga agccagtcag
    12901 ctctatgcgc gagaaggctt taatattatt gccactgcca atacccgcga tcgcggcgtc
    12961 aatgaaatga gtgctgcgct aaagcgtcgc ttcgattttg aaacggtttt tccgattatg
    13021 gatttcgccc aggagttgga actggtcgcc agtgcttcgg cgcgtttgct ggcccatagc
    13081 ggtattccgc ataaagtgcc tgacgcggta ctggaattac tggtccgcac cttccgcgat
    13141 ctgcgtgcca acggcgaaaa gaaaacgtca atggatacac tgacagcgat tatgtccacc
    13201 gctgaagccg tgaacgtggc ccatgctgtg ggcgtccgcg cctggttttt agcgaatcgc
    13261 gcgggggagc ctgccgacct ggtggaatgt attgccggaa ccatcgtcaa agataacgaa
    13321 gaagatcgcg cgcgtctgcg ccgttacttc gaacagcgtg tcgccacaca taaagaagct
    13381 cactggcagg cttattatca agcccgccac cgcctgccgt gaggaaagat gcatgagcga
    13441 gccgttaatt gtcggcatcc ggcatcatag tccggcctgc gcccggctgg tgaaatcgtt
    13501 aatcgaaagc cagcggccac gatacgtgtt gattgaaggc ccggctgatt ttaatgaccg
    13561 ggtagacgaa ctgtttttag cccaccagct tccggtagct atttacagtt attgccagta
    13621 tcaggacggt gcagcccccg ggcgtggtgc ctggacgcca tttgctgaat tttcgccgga
    13681 gtggcaggcg ctacaagccg cacgtcgcat tcaggcacaa acttacttca tcgatttgcc
    13741 ttgctgggcg cagagtgaag aagaggacga ttcgcctgat acgcaagatg aaagccaggc
    13801 cttactgctg cgtgccaccc gcatggataa cagcgatacc ctgtgggatc acttgttcga
    13861 agatgaaagc cagcaaactg cattaccctc tgcgctggcg cactattttg cccaactgcg
    13921 gggcgacgcc tccggcgatg cgctcaatcg tcagcgcgaa gcctttatgg cccgctggat
    13981 tggatgggcg atgcagcaaa ataatggcga cgtgttagtt gtctgcggtg gctggcacgc
    14041 tccggcactg gcaaagatgt ggcgcgaatg ccctcagaaa attaacaagc cagaattgcc
    14101 ctcgctggca gatgccgtta caggttgtta tctcacaccc tacagtgaaa agcgccttga
    14161 tgtgctggca ggataccttt caggaatgcc tgccccggta tggcaaaact ggtgctggca
    14221 gtggggcttg cagaaggccg gtgaacaact gctaaaaact atccttaccc gtttgcgcca
    14281 gcacaaattg cccgcttcta ccgcggatat ggctgccgct catctgcatg cgatggcgct
    14341 ggcacagttg cgcggtcata cactaccgtt acgcactgac tggctggatg ccatagcagg
    14401 ctcgctgatt aaagaagccc tgaacgcgcc gttgccgtgg agctatcgcg gcgttattca
    14461 tcccgatacc gatccgattc tgctaacgtt gatagacaca ttagcgggtg acggattcgg
    14521 taaacttgcc ccttctacgc cacaaccgcc tctgccaaaa gatgtcacct gcgaactgga
    14581 acgtaccgca atctcccttc cggcggagct taccttaaat cgctttaccc ccgatgggct
    14641 ggcgcaaagt caggtgttac atcggctggc aatactggag atccctggga ttgtacgcca
    14701 gcagggaagt acactgacac ttgcaggcaa cggtgaagaa cgctggaaat taacccgccc
    14761 gcttagccag catgcggcat tgattgaggc cgcctgtttt ggtgccacac tccaggaagc
    14821 cgcacgcaat aaattagaag ccgatatgct ggacgcgggc ggaatcggca gtatcaccac
    14881 atgtcttagc caggcggcgt tagcgggtct ggcgtccttc agtcaacaat tactggagca
    14941 actcacacta ttaatcgccc aggaaaatca atttgccgaa atgggccagg cgctggaagt
    15001 gctttatgcc ttatggcggc tggatgaaat tagcggtatg caaggcgcgc agatattaca
    15061 aacgacgtta tgcgcgacta tcgatcgcac gctgtggctg tgtgaatcta acggcagacc
    15121 ggatgaaaag gagtttcacg ctcacctgca tagctggcaa gcgctttgcc atattctgcg
    15181 cgatctacat agcggcgtta atttacccgg cgtttctctt tctgcggcgg tagccttact
    15241 ggagcgacgc agtcaggcaa ttcatgcccc ggcgctggat cgcggcgcgg ctcttggcgc
    15301 actaatgcgt ctggaacatc ccaacgccag tgccgaagcg gcgctgacga tgctggcgca
    15361 gttatccccg gcacaatctg gtgaggcgct gcacggtttg ctggcgctgg cccgccatca
    15421 actggcctgt cagccggcat ttatcgccgg tttcagcagt catttaaatc aactgagtga
    15481 agccgatttt attaacgccc tgcccgattt acgcgcggcg atggcctggc taccaccacg
    15541 agaacgcggg acgctggcgc atcaggtgct tgagcattat caactggcgc aacttcccgt
    15601 ttcggcgctg caaatgccgt tgcattgtcc accacaggcc attgcacatc atcaacaact
    15661 cgaacagcag gcactggcat cgctgcaaaa ctggggagtt ttccatgtct gaactgaacg
    15721 atcttctgac cacccgtgag ctacaacgct ggcgattaat tcttggcgaa gcggcagaaa
    15781 cgacgctttg tgggctggat gacaacgccc ggcagataga ccacgcgctg gagtggctgt
    15841 atgggcgcga tcctgaacgg ctccagcgtg gtgaacgttc cggtggatta ggtggctcaa
    15901 atctcaccac ccctgagtgg atcaacagta ttcacacgct gtttccgcag caggtgattg
    15961 agcggctgga aagcgatgcc gtgctgcgct acggcattga agatgtggtg acgaatctcg
    16021 acgtgctgga acgtatgcag ccttctgaaa gcctgctacg cgctgttttg cacaccaaac
    16081 atctgatgaa ccccgaagta ctggctgccg cccgccggat agtgtgccag gttgttgaag
    16141 aaattatggc tcgactggca aaggaagttc gtcaggcttt ttctggtgtc cgcgatcgcc
    16201 gtcgccgttc atttattcca ctggcgcgaa actttgattt caaaagtact ctgcgcgcca
    16261 acctgcaaca ctggcacccg caacacggca agttgtatat cgaatccccc cgctttaaca
    16321 gccgcattaa acgccaaagc gaacaatggc aactggtctt actggttgat caaagcggct
    16381 cgatggtcga ttcggtgatc ccctctgcgg tgatggcggc ctgtttgtgg cagttacccg
    16441 gcattcgtac ccatctggtg gcgtttgaca caagcgtcgt tgatctcacg gcagacgttg
    16501 ccgatccggt agagttatta atgaaagtac agttgggcgg cgggaccaat atcgccagtg
    16561 ccgtggagta tggtcggcaa cttattgaac aaccagcgaa aagcgtcatt atcctcgtga
    16621 gcgattttta cgaagggggt tcatcatcat tactgacgca tcaggtgaaa aagtgtgtcc
    16681 agagcggcat caaagtgctg ggactggcag cgctcgatag cacagcaaca ccttgctatg
    16741 accgcgatac ggcccaggcg ctggttaatg tcggcgcaca aatagccgcc atgacaccgg
    16801 gcgagctggc atcatggctt gcggagaatc ttcagtcatg aattcactac gtccggaatt
    16861 attagaactg acaccgcagg ccctgacggc gttaagcaat gccggttttg ttaagcgcag
    16921 tcttaaggaa ctggaaaatg gcaacgtccc ggagatcagc catgagaacg gcgctttaat
    16981 cgccaccttc agtgacggtg tccgtaccca gctggcgaac ggccaggcac tgaaagaggc
    17041 tcagtgcagc tgcggggcca gcggtatgtg ccgtcatcgc gtgatgctgg tgttaagtta
    17101 tcaacgactt tgtgctaccg cccagcctac gggaaaagaa gaggaatggg atccggcaat
    17161 ctggctggaa gaactggcta cccttcccga tgccacccgc aaacgcgcac aggcgctggt
    17221 cgctaaaggc atcaccattg agttgttctg tgcgccgggt gaaattccct ctgcccgctt
    17281 accgatgagc gatgtgcgtt tttattcccg cagcagtatt cgtttcgccc gttgtgattg
    17341 tattgaaggc acactttgcg aaca
//
LOCUS       DADMJB010000085        17344 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.085, whole genome shotgun sequence.
ACCESSION   DADMJB010000085 DADMJB010000000
VERSION     DADMJB010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17344)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17344)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17344
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.085"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            191..2038
                     /gene="ldtD"
                     /locus_tag="JN078_002455"
     CDS             191..2038
                     /gene="ldtD"
                     /locus_tag="JN078_002455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HAY9041628.1"
                     /translation="MLLNMMCGRRLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAV
                     SEQGEALPQAQATAIMAGIQPLPEGAAEKARTQIESQLPAGYKPVYLNQLQLLYAARD
                     MQPMWENRDAVKAFQQQLAEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGY
                     LHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQYA
                     AMHESLLALLSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPGD
                     DTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGL
                     GADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTELSTGIMVNIPAYSLVYYQNG
                     NQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESH
                     GYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYL
                     HDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDAGWNDKRISDALKQGDTRYVNI
                     RQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSSSQIVSKAEQLIR"
     gene            2219..2767
                     /locus_tag="JN078_002456"
     CDS             2219..2767
                     /locus_tag="JN078_002456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbK family protein"
                     /protein_id="HAY9041629.1"
                     /translation="MDKFDANRRKLLALGGVALGAAILPTPAFATLSTPRPRILTLNN
                     LHTGESIKAEFFDGRGYIQEELAKLNHFFRDYRANKIKSIDPGLFDQLYRLQGLLGTR
                     KPVQLISGYRSIDTNNELRARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRA
                     GGVGYYPRSNFVHIDTGPARHW"
     gene            2794..3441
                     /gene="gloC"
                     /locus_tag="JN078_002457"
     CDS             2794..3441
                     /gene="gloC"
                     /locus_tag="JN078_002457"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003035823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase GloC"
                     /protein_id="HAY9041630.1"
                     /translation="MNYRIIPVTAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDD
                     SGLTLMQILLTHGHLDHVGAAAELAQHYGVPVFGPEKEDEFWLQGLPAQSRMFGLEEC
                     QPLTPDRWLNEGDTISIGNVTLQVLHCPGHTPGHVVFFDDRAKLLISGDVIFKGGVGR
                     SDFPRGDHNQLISSIKDKLLPLGDDVTFIPGHGPLSTLGYERLHNPFLQDEMPVW"
     gene            complement(3663..4853)
                     /locus_tag="JN078_002458"
     CDS             complement(3663..4853)
                     /locus_tag="JN078_002458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009653304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/tyrosine/aromatic aminotransferase"
                     /protein_id="HAY9041631.1"
                     /translation="MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTP
                     VLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARMAQTPG
                     GTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD
                     ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFA
                     RGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMK
                     AAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA
                     NRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAI
                     VAVL"
     gene            complement(5038..6126)
                     /gene="ompF"
                     /locus_tag="JN078_002459"
     CDS             complement(5038..6126)
                     /gene="ompF"
                     /locus_tag="JN078_002459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpF"
                     /protein_id="HAY9041632.1"
                     /translation="MMKRNILAVIVPALLVAGTANAAEIYNKDGNKVDLYGKAVGLHY
                     FSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNK
                     TRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVAT
                     YRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADR
                     TNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKT
                     QDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVD
                     YIINQIDSDNKLGVGSDDTVAVGIVYQF"
     gene            complement(6728..8128)
                     /gene="asnS"
                     /locus_tag="JN078_002460"
     CDS             complement(6728..8128)
                     /gene="asnS"
                     /locus_tag="JN078_002460"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HAY9041633.1"
                     /translation="MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDG
                     SCFDPVQAVINNSLPNYNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGW
                     VEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWV
                     STPLITASDTEGAGEMFRVSTLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGET
                     YACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKA
                     VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENCGRKFENPVYWG
                     VDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIG
                     GSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQN
                     VRDVIPFPRTPRNASF"
     gene            complement(8297..9499)
                     /gene="pncB"
                     /locus_tag="JN078_002461"
     CDS             complement(8297..9499)
                     /gene="pncB"
                     /locus_tag="JN078_002461"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706850.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HAY9041634.1"
                     /translation="MTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVHVAAEFRCRGD
                     DLLGIYADAIREQIQAMQHLRLQDDEYQWLSALPFFKADYLNWLREFRFNPEQVTVSN
                     DNGKLDIRLSGPWREVILWEVPLLAVISEMVHRYRSPQADVAQALDTLESKLVDFSAL
                     TAGLDMSRFHLMDFGTRRRFSREVQETIVKRLQQESWFVGTSNYDLARRLSLTPMGTQ
                     AHEWFQAHQQISPDLANSQRAALAAWLEEYPDQLGIALTDCITMDAFLRDFGVEFASR
                     YQGLRHDSGDPVEWGEKAIAHYKKLGIDPQSKTLVFSDNLDLRKAVELYRHFSSRVQL
                     SFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFD
                     LPHIKKAS"
     gene            9765..12377
                     /gene="pepN"
                     /locus_tag="JN078_002462"
     CDS             9765..12377
                     /gene="pepN"
                     /locus_tag="JN078_002462"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000193787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HAY9041635.1"
                     /translation="MTQQPQAKYRHDYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVR
                     HGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEEGALVISNLPEHFTLKIVNEISPAA
                     NTALEGLYQSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKTKYPFLLSNGN
                     RVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRG
                     NLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYV
                     LARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDL
                     GSRAVNRINNVRTMRGLQFAEDASPMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIH
                     TLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHFRRWYSQSGTPIVTV
                     KDDYNPETEQYTLTISQRTPATPDQAEKQPLHIPFAIELYDNEGKVISLQKGGHPVNS
                     VLNVTQAEQTFVFDNVYFQPVPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWD
                     AAQSLLATYIKLNVARHQQGQPLSLPVHVADAFRAVLLDEKIDPALAAEILTLPSVNE
                     MAELFDIIDPIAIAEVREALTRTLATELADELLAIYNANYQSEYRVEHEDIAKRTLRN
                     ACLRFLAFGETHLADVLVSKQFHEANNMTDALAALSAAVAAQLPCRDALMQEYDDKWH
                     QDGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFH
                     AEDGSGYQFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLEN
                     LSGDLYEKITKALA"
     gene            complement(12420..13171)
                     /gene="ssuB"
                     /locus_tag="JN078_002463"
                     /pseudo
     CDS             complement(12420..13171)
                     /gene="ssuB"
                     /locus_tag="JN078_002463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309043.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonates ABC transporter ATP-binding
                     protein"
     gene            complement(13168..13905)
                     /gene="ssuC"
                     /locus_tag="JN078_002464"
                     /pseudo
     CDS             complement(13168..13905)
                     /gene="ssuC"
                     /locus_tag="JN078_002464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001714028.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter permease
                     SsuC"
     gene            complement(13970..15115)
                     /gene="ssuD"
                     /locus_tag="JN078_002465"
                     /pseudo
     CDS             complement(13970..15115)
                     /gene="ssuD"
                     /locus_tag="JN078_002465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706856.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FMNH2-dependent alkanesulfonate monooxygenase"
     gene            complement(15112..16071)
                     /locus_tag="JN078_002466"
     CDS             complement(15112..16071)
                     /locus_tag="JN078_002466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfonate ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY9041636.1"
                     /translation="MRNIIKLALVGLLSVSTIAVAAESSPEALCIGYQKGSIGMVLAK
                     SHQLLEKRYPQSKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVG
                     VEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQP
                     TYLTPADARAAFQQGNVDAWAIWDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPY
                     AEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMGLPAPVIASYLDHRPPTTIKP
                     VNAEVAALQQQTADLFYENRLVPKKVDIRQRIWQPTQLEGKQL"
     gene            complement(16064..16639)
                     /gene="ssuE"
                     /locus_tag="JN078_002467"
     CDS             complement(16064..16639)
                     /gene="ssuE"
                     /locus_tag="JN078_002467"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent FMN reductase"
                     /protein_id="HAY9041637.1"
                     /translation="MRVITLAGSPRFPSRSSSLLEYAREKLNGLDVEVYHWNLQNFVP
                     EDLLYARFDSPALKTFTEQLQQADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVV
                     LPLATGGTVAHLLAVDYALKPVLSALKAQEILHGVFADDSQVIDYHHRPQFTPNLQTR
                     LDTALETFWQALHRRDVQVPDLLSLRGNAHA"
     gene            complement(17096..17335)
                     /locus_tag="JN078_002468"
                     /pseudo
     CDS             complement(17096..17335)
                     /locus_tag="JN078_002468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706859.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         4373 a         4440 c         4396 g         4135 t
ORIGIN      
        1 taacggcgcg cttttcttta aacttcttta cattaggtta tgtaaaaacg tatcggcgtt
       61 tatatactga agataagcct gatgagtaac aggcttgctc gtcatacttt cgtgagtatt
      121 ggcgttgtac aggcaagtcg taaaataaca gcctggctat tcagagtatg ataaaaacag
      181 ggggcaaggg atgttgctta atatgatgtg tggtcgtcgg ctgtcggcaa tcagtttgtg
      241 cctggccgta acattcgctc cactgttcaa tgcgcaggcc gatgagcctg aagtaatccc
      301 tggcgacagc ccggtggctg tcagtgaaca gggcgaggca ctgccgcagg cgcaagccac
      361 ggcaataatg gcggggatcc agccattgcc tgaaggtgcg gcagaaaaag cccgcacgca
      421 aatcgaatct caattacccg caggttacaa gccggtttat cttaaccagc ttcaactgtt
      481 gtatgccgca cgcgatatgc aacccatgtg ggaaaaccgt gatgctgtta aagccttcca
      541 gcaacagctg gcagaggtgg cgattgccgg tttccagccg cagtttaata aatgggtaga
      601 gttactgacc gatcctggtg ttaacgggat ggcacgcgac gtagtgctct ctgatgcgat
      661 gatgggctat ctccatttca ttgcaaatat tccggtcaaa ggcactcgct ggctatatag
      721 cagtaaacct tatgcacttg caacgccgcc gctctcggtg attaaccaat ggcagctggc
      781 gctggataaa ggtcaattgc ctacgtttgt tgcaggactg gcaccgcagc atccgcaata
      841 tgcggcgatg catgaatcgt tactggcctt actcagtgac accaaaccgt ggccccaact
      901 gaccggcaaa gcaacgttgc gcccagggca gtggagtaac gacgtaccgg cgttgcgcga
      961 aatattgcaa cgcacaggca tgttggacgg ggggccgaaa attactctac ctggcgatga
     1021 cacgccaact gacgcggtag tcagcccatc cgctgttact gttgaaacag cagaaactaa
     1081 gccgatggac aagcaaacga cgtctcgtag taaacctgcg cctgccgttc gcgccgccta
     1141 cgataatgaa ctggtggaag ccgttaaacg ttttcaggca tggcaaggat tgggggcaga
     1201 tggtgctatt ggcccggcaa cacgtgactg gttaaacgta acgcccgccc agcgtgctgg
     1261 cgtgttggct ctcaacatcc agcgattgcg cttgctgcca acagagcttt ctaccgggat
     1321 catggttaac attccggcct attcgctggt ctactatcag aacggcaatc aggtgctgga
     1381 ttcgcgagtc attgtcggtc gccccgatcg caaaacgccg atgatgagca gtgcccttaa
     1441 caacgtagtg gtaaacccgc cgtggaacgt acctccaact ctggcacgca aagatattct
     1501 gccaaaagtg cgcaacgatc cgggatatct cgaaagccat ggctatacgg tgatgcgtgg
     1561 ctggaacagc agagaagcga ttgacccatg gcaggttgac tggtctacaa tcacggcctc
     1621 gaatttaccg ttccgcttcc agcaggctcc aggcccacgg aactcgctgg ggcgctataa
     1681 attcaatatg ccgagttcag aggccattta tttgcatgac acgccgaacc acaatctgtt
     1741 caagcgtgat acacgcgcat tgagctcagg ctgtgtacga gtgaataaag cttccgatct
     1801 ggcgaatatg ctgttgcagg atgcaggctg gaatgacaaa cgtatttctg atgcgctgaa
     1861 gcagggtgat acacgttacg tcaatattcg gcagtcgatt ccggtgaatc tctactacct
     1921 gacggccttt gttggtgcag atggtcgtac ccagtatcgt acagatattt acaattatga
     1981 tctgcctgcg cgatccagct cgcaaatcgt atcgaaagcg gaacaattaa tcaggtaaat
     2041 gaagtagttc ggggaaatca gttgtcgtaa taattagcat gattgggggc gattctctgc
     2101 agcccccgtc actgctgggg ttgagtcatc ttgacgtctg ctttacgggc ggttaaggtg
     2161 cctcttgtgc gccagaagtg catataaacg ataacattga cctgtagact tgattatcat
     2221 ggacaaattc gacgctaatc gccgcaaatt gctggcgctt ggtggcgttg cactcggtgc
     2281 cgccatcctg ccgacccctg cgtttgcaac actctctacc ccacgcccgc gcattttgac
     2341 actcaataat cttcataccg gagagtcaat caaagcggag tttttcgatg gcagaggcta
     2401 tattcaggaa gaattggcaa aacttaacca ttttttccgc gattaccgcg cgaacaaaat
     2461 aaagtccatc gacccaggat tattcgacca gttgtatcgc ctgcaagggt tgttaggcac
     2521 gcgcaaaccg gtgcaactca tttccggtta tcgttccatt gataccaaca atgaactacg
     2581 cgcccgcagc cgtggagtag cgaagaaaag ctatcacact aaaggccagg cgatggattt
     2641 ccatattgaa ggtatcgcgt taagcaatat tcgcaaagcc gcgttatcta tgcgcgcagg
     2701 tggtgtagga tattacccac gtagtaactt tgtgcatatt gataccgggc cagcacggca
     2761 ctggtagcaa tcgcttaacg aaacaggggc agtatgaact atcgtattat tccggtcacc
     2821 gcattctccc agaactgttc attaatctgg tgtgaacaaa cccgtctggc cgcactggtc
     2881 gatcctggcg gcgatgcgga aaaaatcaaa caggaagttg atgacagcgg cctgacactg
     2941 atgcagatcc tgctgacgca tggtcatctg gaccacgttg gcgcagcggc ggaactggcg
     3001 caacattacg gcgtgccggt ttttggcccg gaaaaagaag atgagttctg gctgcaaggc
     3061 ttgcctgcgc aaagtcgtat gtttggtctg gaagagtgcc agccgctgac gccagatcgt
     3121 tggctgaacg aaggcgatac catcagcata ggaaatgtga ctttacaggt gttacattgc
     3181 cctgggcata cgccgggtca tgtcgtgttt tttgatgatc gggcaaagct gctgatttct
     3241 ggcgatgtta ttttcaaagg cggagtaggg cgcagtgact tcccgcgtgg cgatcataat
     3301 caactgattt cttcaatcaa agataaattg ctgccactgg gggatgacgt gacatttatt
     3361 ccgggtcacg gaccattatc cacacttggt tatgaacgcc tgcataatcc cttcctgcaa
     3421 gacgaaatgc ccgtctggta aggcacataa aaaagcccgc ttttaatgcg ggcctggatt
     3481 tctggcaaag tgcgctttgt ttatgccgga tgcggcacga gcgccttatc cggcctacaa
     3541 aatcgtgcaa attcaaaata ttgcagggga cgcgtaggcc tgataagcgt agcgcatcag
     3601 gcaatgttgc gtttgtcatc agtctcagcc cgcttttcag cgggcttcat tgtttttaat
     3661 gcttacagca ctgccacaat cgcttcgcac agcggagcca tgttatctgg tgtcatcccg
     3721 gccacattta cgcgaccaga agcaaccgca tatacgccaa actcttcgcg cagacgcagc
     3781 acttgttctt ttgtcaggcc actgaaggag aacatgccgt tctgtttgat gataaagctg
     3841 aagtcgcggt ttgcgccttt ttcctgcagc gtattgacga acaactgacg catacgctga
     3901 atacgctggc gcatatcagt cagctcttgt tcccaaatcg cacgtaacgc atcgttgctc
     3961 aggatggtgg caacaacaga agcgccgtgt gctggtgggt tagagtagtt agcgcgaatc
     4021 gccgctttca tttggctgaa tgcgcgatca acggtttcac tgtcggcagc aaccagagta
     4081 caagcgccaa cacgctcgtt gtacaggcca aagtttttag agtaggaact ggcaacaatc
     4141 agctctttat gcatagccgc gaaagcgcgc agtccttcag catcttcttc cagaccacgg
     4201 gcaaaaccct ggtaagcgaa gtcaaacagc ggtaaccagc ctttctcaac ggagagttgt
     4261 gccagtgtct gccattgttc cagcgtaggg tcgataccgg ttgggttatg gcagcagcca
     4321 tggaacagca ctacgtcgcc agcctgagct tcattcaggc tgttaatcag tgcatcgaag
     4381 tcaagagtgt gattttccgc atcataataa gcgtattcac gaacttccag acctgcagag
     4441 ttaaagacgc tcttatggtt cggccagctt gggttgctca cccacactcg cttaacgctg
     4501 gtattttttg ccaggaaatc ggcagctacg cgtagtgcgc cagtgccccc cggagtctgt
     4561 gccatgcgag cacgtttgtc attgatcagg gcgctacctt taccaaacag cagttcctga
     4621 gtgcagcgac caaattcagg gatgccgtca atgccgaggt aatttttggt ggtttcattt
     4681 tcgagcagat actgttcagc ctttttcacg ctggtcagta ccggggtttt gcccgtctca
     4741 tctttataga caccaatccc gaggttaatt ttgccgggac gttcatcggc acgaaacaga
     4801 tcggccaggc ccagaatcgg gtcggcagga gcggcggtaa tgttctcaaa catgacgagg
     4861 ttccattatg gttacagaag ggaagtccgc tatcagggta acgggagatt tacaaaattc
     4921 caactattac tgatgaaaac gcaggctgtt tttgcaagac gtgagattgc tctggaaggt
     4981 ataaaaaaaa caggaccaaa gtcctgtttt ttcggcattt aacaaagagg tgtgctatta
     5041 gaactggtaa acgataccca cagcaacggt gtcgtctgaa cctacgccca gtttgttatc
     5101 agaatcgatc tggttgatga tgtagtcaac ataggtggac atgtttttgt tgaagtagta
     5161 ggttgcgccc acttcaaagt agttcaccag atcaacatca ccgatacctt ctacgtcttt
     5221 cgctttagat ttggtgtaag cgatggacgg acgcagaccg aaatcgaact ggtattgcgc
     5281 aactaacaga acgtcttgcg ttttgttggc gaagccgctg gtgtttgtaa atttattagt
     5341 gatcggcgta gcgttacggg tttcaccgta gttcgctgcc aggtagatgt tgttcgcgtc
     5401 gtacttcaga ccagtagccc actgttcagc ttttttaccg ttgccaagag gttgagcttc
     5461 ttgcaggttg gtacggtcag ctgcaccata agcaccaacg ataccaaagc cttcgtattc
     5521 gtagctgata gaaccgccaa caccgtcgcc gttagaacgg cgtgcagtgt cacgctcgtt
     5581 tttacccagg tactgaacag cgaagttcag gccatcaacc agaccaaaga agttggagtt
     5641 acgataggta gcaacgccgc caacacgacc aacgaagaag tcatcgctgt atgcagtatc
     5701 accaccaaat tctggcagca tatcggtgta acccagtgca tcataaacca caccgtagtt
     5761 acggccgtaa tcgaaagaac caacgtcagc gtatttaaga cccgcgaatg ccagacgcgt
     5821 tttgttacca gtttgagcgt cagcgccttc agagttgtta ccttggaagt tatattccca
     5881 ctgaccataa ccggtcagat cggaattgat ttgagtttcc cctttaaaac caagacgggc
     5941 ataggtcatg tcgccattgc caccgtaact gttttcaccg ttacccttgg aaaaataatg
     6001 cagaccaaca gctttaccgt acagatctac tttgttgcca tctttgttat agatttctgc
     6061 agcgtttgca gtacctgcta ctaacagagc agggacgatc actgccagaa tattgcgctt
     6121 catcattatt tattaccctc atggtttttt ttatgacacc tgccactgcc gtcaataagt
     6181 tctgtcaata aaaatttacg gaactattga tgagagtttg gtgtctttat gtgtctgcag
     6241 gcatctttcc attcaaacta acgtttcgct accgtgaaag tgctgcaaag ataaagattt
     6301 agtttcaaaa agaaaaaata tgtaaccaaa agtaaaaatt aaggaacttt gtgaacaccg
     6361 tcatatttcc atagaaacgt gatgatattt acagcaattt ttatctattt atatgattta
     6421 cttatattta aattaactaa gcggaaattt tgtttctgat ggaaacttta tcgacctggc
     6481 acaaaatcct ctttcagaca tccagaatgc caaaaaatag tatgaaaatt gtgctatcag
     6541 ctaagaaaaa actaatccgc aataagaata cgggttattt tttgtgcgta aatgttgcaa
     6601 tgtaatattc cgtaacagga tgatcgttat ggcggggttg caaatagatt gcttgactta
     6661 acaaacagat aacttgacag aaaggataaa aaagagccag caggcgctgg ctctttgagg
     6721 aagaaaatca gaagctggcg ttgcgcggag tacgtgggaa cggaatcaca tcacgcacgt
     6781 tttgcacgcc agttacgtaa gcaatcaggc gttcaaaacc aagaccgaaa cctgaatgcg
     6841 gaacagtacc gtagcgacgc agatcgcgat accaccagta atcttcttta ttcaggccca
     6901 tttccagcat acgctcgtcc agaacgtcca gacgttcttc acgctgggag cctccaatga
     6961 tctcaccgat gcccggagcc agaacgtcca tagccgcaac ggttttaccg tcttcgttga
     7021 ggcgcatata gaacgcttta atatctttcg gatagttttt aaccactacc ggtgctttaa
     7081 agtgttcttc cgccagataa cgctcatgct cagaagagag atcgacgccc cagtaaaccg
     7141 ggttttcaaa cttcctgccg cagttttcga gaatggtcac tgcgtcggtg taatccacct
     7201 gcgcgaaatc ggcctcaatg aagcgttcca gacgtgaaac ggcatcttta tctacgcgtt
     7261 cagcgaagaa tttcatgtcg tctgcgcgtt cttcgagaac cgctttgaag acatatttca
     7321 gcatggcttc agccagaccc gcgatatcgt tcaggttagc aaacgccact tccggctcca
     7381 gcatccagaa ttccgccagg tgacggctgg tgttggagtt ttcagcacgg aaagtcgggc
     7441 cgaaggtata aattttggat aatgcgcaag cgtaggtttc gccgttcaac tggccagata
     7501 cggtcaggaa agactcttta ccaaagaagt ctttgtcgaa atccactttg ccctgatcgt
     7561 tacgcggcag gttttccaga tccagcgtag aaacgcggaa catttcgcct gcaccttcgg
     7621 tatcagatgc ggtaatcagt ggcgttgaaa cccagaagaa tccctgctcg ttaaagaagc
     7681 gatgcagcgc ctgcgccagc gtatggcgaa cgcgcgcgac ggcaccaatc aggtttgtgc
     7741 gcggacgcag gtgagcgact tcacgcagat actcaatgct gtggcgtttt gccgccatcg
     7801 ggtaagtgtc tggatcttca acccaaccag caacttcaac tttgctggcc tgaatttcaa
     7861 attgttgccc ctggcccggc gacgccacga ctttacccgt cacaatgacc gagcagccgg
     7921 tggtcagacg caggacgtct tcattgtaat tgggcagaga attattgatg acagcctgta
     7981 caggatcaaa gcaggaaccg tcataaacgg cgaggaagga gatgccagct tttgaatctc
     8041 ggcgggtacg tacccatccg cgtacggtga cttcgctgtc aacggctacg cggccctgga
     8101 gtacgtcggc tacaggcaca acgctcataa tattctctct gttaatagtc ggaaaaaata
     8161 aacacttgtc cacccgtaaa tggggggata cctatgttac ctggcatctg caatcagaca
     8221 agcagaattc gcaaatgcag cgaaagattt cggaattaaa ggtaaaaaaa gggagccgat
     8281 tagctccctg atgatattaa ctggcttttt taatatgcgg aaggtcgaac gctttgcgca
     8341 gcgcccgaac aaacgcttta tcatggcaga tagttttgcc agggctgtca gaaagtttcg
     8401 ccaccggttt accgttacac tctaccaact taatcacaat attcaggggt tttacctggg
     8461 ggatatcgca ggtcaggcga gtcccaatac caaaacttaa ttgcacgcgg gaagagaagt
     8521 ggcggtatag ctcaaccgct ttgcgtaaat ccagattgtc agagaaaacc agcgttttac
     8581 tctgtggatc aattcccagc tttttataat gtgcaatggc tttttcaccc cattcaaccg
     8641 ggtcgccaga gtcatgacgc aggccctgat accgactggc gaactcgaca ccgaaatcac
     8701 gcaggaaagc atccatagtg atgcagtcgg ttaatgcaat gccaagttgg tcgggatatt
     8761 cttccagcca ggcagcaagt gcagctcgct ggctgttggc taggtccggg ctgatttgct
     8821 gatgtgcctg gaaccattcg tgcgcctgtg ttcccatcgg cgtgagggaa agccgacgcg
     8881 ccagatcgta gttgctggtg cccacgaacc aggattcctg ttgcagacgc ttaacgatag
     8941 tttcttgtac ttcgcgagaa aaacggcgac gggtgccaaa atccatcaga tggaagcgcg
     9001 acatatcaag accggcggtt aacgccgaga agtcgactaa tttgctttcc agcgtgtcga
     9061 gggcttgcgc aacgtcggcc tgcggtgagc gatagcgatg taccatttca ctgataaccg
     9121 ccagcaaagg aacttcccag aggatgactt cacgccacgg accgcttaag cgaatatcca
     9181 gcttgccatt atcgttggac acggtgactt gttccgggtt aaagcggaat tcgcgtaacc
     9241 agttaagata gtcggcctta aagaaaggca gggcagagag ccactgatat tcatcatcct
     9301 gcaggcgcag gtgctgcatc gcctgaatct gttcacgaat agcatcggca taaataccca
     9361 gcagatcgtc acctcggcaa cgaaactccg ccgcgacatg cacatcgtaa tagtgatgaa
     9421 acacggcttg ctgcatatgc aacttataag catctgtatc cagcaacgag tgcagaacag
     9481 gagaagcgaa ttgtgtcata ggtgcgcagt agcatcctcg tacaggagcg tttagtacaa
     9541 taaacatctt caggaactgc tggagtatac cttgtttcgc aatttattga accccgatca
     9601 caccatatgc cacctttctg gtcgatggca ttacgcggtg tatgttataa aaatgtagca
     9661 ataaaggcgt ttgtacctga aaagatgaag attctgcata gcgcgattta cgcaacagga
     9721 atagactgaa caccagactc tataaaagat gctaaaggtt atttatgact caacagccac
     9781 aagccaaata ccgtcacgat tatcgtgcgc cggattacca gattactgat attgacttga
     9841 cctttgacct cgacgcgcaa aagacggtcg ttaccgcggt cagccaggct gtccgtcatg
     9901 gtgcatcaga tgctccgctt cgtctcaacg gcgaagacct caaactggtt tctgttcata
     9961 ttaatgatga gccgtggacc gcctggaaag aagaagaggg cgcactggtc atcagtaatt
    10021 tgccggagca ttttacgctt aagatcgtta atgaaataag cccggcggcg aataccgcgc
    10081 tggaagggct ttatcagtca ggcgatgcgc tttgcaccca gtgtgaagcc gaaggtttcc
    10141 gccatattac gtattatctc gaccgcccgg acgtgctggc gcgttttacc accaaaatta
    10201 ttgccgataa aaccaaatat cccttcctgc tttccaacgg taaccgcgtt gcgcaaggtg
    10261 aactggaaaa cggacgccat tgggtacagt ggcaggaccc gttcccgaaa ccgtgctacc
    10321 tgtttgcgct ggtggcaggc gactttgatg tactgcgcga cacctttacc acgcgttctg
    10381 gtcgcgaagt ggcgctggag ctgtacgtcg atcgcggcaa ccttgatcgc gcgccgtggg
    10441 cgatgacctc gctgaaaaac tcaatgaaat gggatgaaga acgcttcggc ctggagtatg
    10501 acctcgacat ctatatgatc gtcgcggtgg atttcttcaa tatgggcgca atggagaata
    10561 agggtttgaa tatctttaac tccaaatatg tgctggcccg caccgacacc gccactgaca
    10621 aagattacct cgatattgaa cgcgttatcg gccatgaata tttccataac tggaccggta
    10681 accgagtcac ctgccgcgac tggttccagc tcagcctgaa agaaggttta accgtcttcc
    10741 gcgatcagga attcagctct gaccttggtt cccgtgcagt taaccgcatc aataatgtgc
    10801 gcaccatgcg cggattgcag tttgcggaag acgccagccc gatggcgcac ccgatccgcc
    10861 cggacatggt cattgagatg aacaacttct ataccctgac cgtttacgag aagggcgcgg
    10921 aagtgatccg tatgatccac accctgctgg gcgaagaaaa cttccagaaa gggatgcaac
    10981 tctatttcga gcgccatgat ggcagcgcgg caacctgcga cgactttgtg caggcgatgg
    11041 aagatgcgtc gaatgtcgat ctctcccatt tccgccgttg gtacagccag tccggcacgc
    11101 cgattgtgac cgtcaaagac gactacaatc cggaaaccga gcagtacacc ctgaccatca
    11161 gccagcgcac gccagccacg ccggatcagg cagaaaaaca gccgctgcat attccgtttg
    11221 ccatcgaatt gtatgacaac gaaggcaaag tgatctcgtt gcagaaaggc ggtcatccgg
    11281 tgaattccgt gctgaacgtc acccaggcgg aacagacctt tgtttttgat aatgtctact
    11341 tccagccggt gcctgcgctg ctgtgcgaat tctctgcgcc agtgaaactg gaatataagt
    11401 ggagcgatca gcaactgacc ttcctgatgc gtcatgcgcg taatgatttc tcccgctggg
    11461 atgcggcaca aagcctgctg gcaacctaca tcaagctgaa cgtcgcccga catcagcaag
    11521 ggcagccgct gtctctgccg gtacatgtgg ctgacgcttt ccgcgcagtg ctgctcgatg
    11581 agaagattga tccggcgctg gcggcagaaa tcctgacgct gccttctgtc aatgaaatgg
    11641 ctgaactgtt cgatatcatc gacccgattg ctattgccga agtacgcgaa gcactcactc
    11701 gtactctggc gactgaactg gcggatgagc tgctggctat ttacaacgcg aattaccaga
    11761 gcgagtaccg tgttgagcat gaagatattg cgaaacgcac tctgcgtaat gcctgcctgc
    11821 gcttccttgc ttttggtgaa acgcatctgg ctgacgtgct ggtgagcaag cagttccacg
    11881 aagcgaacaa tatgaccgat gcgctggcgg cgctttctgc ggcggttgcc gcacagctgc
    11941 catgccgtga tgcgctgatg caggaatacg acgataagtg gcatcaggac ggtctggtga
    12001 tggataaatg gtttatcctg caagccacca gcccggcggc gaatgtgctg gagacggtgc
    12061 gcggtctgtt gcagcatcgc tcatttacca tgagcaaccc gaaccgtatt cgttcgttga
    12121 ttggcgcgtt tgcgggcagc aatccggcag cgttccatgc cgaagatggg agcggttacc
    12181 agttcctggt ggaaatgctt accgacctca acagccgtaa cccgcaggtg gcttcacgtc
    12241 tgattgaacc gctgattcgc ctgaaacgtt atgatgccaa acgtcaggag aaaatgcgcg
    12301 cggcgctgga acagttgaaa gggctggaaa atctctctgg cgatctgtac gagaagatca
    12361 ccaaagcact ggcttgataa ataaccgaat ggcggcaata gcgccgccat tcggggaatt
    12421 tacccctgtt ttctcaggcg aatttcagat tcaccacgct gcatcaccct ttgcaacact
    12481 tccgattcca gctccgctaa tcgcaccgac cctaatcgac gcggaggggg gatatccact
    12541 gtcaaatcca gaccaatttt tccctcttca attaataaca cccggtcagc cattgctacc
    12601 gcttcgctca catcatgcgt caccaacagt acggtaaagc cgtgctcctg ccaaagtgac
    12661 acaatcaaat cctgcatctc gagtcgcgtt aaggcgtcca gtgccccgag cggttcatca
    12721 agcaacaata aacccggtcg atgaatcaac gctcttgcca gcaccactcg ctgtttctgc
    12781 ccgcctgaaa gtgcggcagg ccattccccg gcgcgattct ccagtcctac cgcagccaac
    12841 gcccgacgcg cggcatcgcg ccactggcct ttaaggccta acccaacgtt atcaatcacc
    12901 gatttccacg gtagcagacg cgcatcctga aacatcattc gcgtgtcttc ctgaatttca
    12961 gccagcggtg tggtgcctgc caacacatcg cctgcggttg gcgtttccag cccggccagc
    13021 aggcgcagca gggtactttt gccaccaccg ccacaaactg acctgccgga atatgtaaat
    13081 ccagttggtt caggacgata ttttccgcgt aatgtttgct tactgcattg agcaacaatg
    13141 gtgtgccctg gttcagacga gcagtattca taccgtggcc tccttcaaat gataagccgg
    13201 gttccagcgc aaccagaggc gctctaacag ctgcgcgctg acgtcagcaa gtttgccgag
    13261 cagggcgtaa agaataatag cgactaccac cacgtccgtt tgcaaaaact ctcgcgcatt
    13321 catcgccaga taaccaatgc cggaattggc agaaatggtt tcggcaacaa tcagcgtcag
    13381 ccacatcagg cccaacgcaa aacgcacgcc gaccataatt gagggcaggg caccaggcag
    13441 gatcacatgg ataaacagcg gtatgccgga taacccatag ctacgcgcca tctccaccag
    13501 cccgcgatcg atattacgga tgccatgcca ggtgttgata taaatgggaa acagcgtacc
    13561 gagcgccacc agaaagattt ttgcggattc atcaatgcca aaccacaaaa tcaccagcgg
    13621 gatcagcgcc agatgcggca cgttgcgcaa catctgaatt gaggtatcca gcagccgttc
    13681 tccccagcga gatagcccgc taatcagtcc caaaatcaac cccagcgatc cgccaattga
    13741 aaagccaatc agcgcccgct aggaactgat cgccagatgc tgccacagtt cgccgctggc
    13801 ggagagcgtc cagaacgccg tcaccacccc ttccggtgag ggcaaaatac gcgtcgacag
    13861 ccagccaact gaggaggcca gttgccacac cgccacgatg cccaccggta aaaactaggg
    13921 ggcaacgcgc aataaccact tcttcactgg cgttgccatt atttcttcct tagctttgcg
    13981 cgactttacg ggggataaaa tcattcgcca ccgcttcgcc ttgcggattc agcggctgcg
    14041 gctggggaat ttccggaatg gcgacatcca gatgtgggaa cagcaactcg ccgacccgat
    14101 acgcttcttc cagatgcgga tagcccgaaa gcacaaagct gtcgatgcca agcgcggcgt
    14161 attcgttgat tcgcgcagcg accgtaggac catcgcccac cagcgccgtt ccggcaccgc
    14221 cgcgcactaa gccaacgccc gcccataaat tggggctgat ctccagattg tcgcgcttgc
    14281 cgttatgtaa cgccgccatt cgctgttgtc ctacggaatc cgtccgggcg aatgcggcct
    14341 gtgctttggc gatagtttca tcatcaagat gcgagattaa ccgctcggcg gcctgccacg
    14401 cttcgtcgtt agtttcacga acaatcacat gcagacgaat accgaaacga attttgcgtc
    14461 catgcgcggc agctttcgcc cgcacttgtt cgatcttctc ttttactagt tctggcggtt
    14521 cgccccaggt gaggtagaga tcaacttgtt ctgccgccag ctcctgggcg acgtctgacg
    14581 atccgccaaa gtaaagcgga ggataaggct gttgaatcgg cgggaagagc agttttgctc
    14641 cgcgcacatg aatatgttta ccgttgaaat tgacggtttc ccccagcaat aagcgccgcc
    14701 agacctaggt aaattccgcc gaggcttcgt agcgctcgct atgatcaagg aacacgccgt
    14761 cgcctgccag ctcttgtgga tcgctgcctg tgaccagatt aaacaacgca cgaccatttg
    14821 agagacggtc aagcgtggcg gcctggcgag cggcaacggt aggtgaggtt acgctggggc
    14881 gcagggcgac aagaaacttc agccgctgcg tcaccgggat catcgacgcc gccaccagcc
    14941 acgcatcttc acacgatcgc cccgttggga tcagcacacc ggtatagccc agacgatccg
    15001 ccgcttgcgc aatttgttgc agataaccgt gatcaaccgg gcgtgaacct tcttccgttc
    15061 ccagatagtg cccgtcaccg tgggtcggta aaaaccagaa catattcaga ctcataattg
    15121 ttttccttcc agttgagtgg gctgccagat gcgctggcga atatcgactt ttttcggcac
    15181 cagacgattt tcataaaaca gatctgccgt ttgctgctgt aaggcggcaa cctcggcgtt
    15241 aaccggtttg atggtggtag gagggcgatg atctaagtaa gaggcaatca ccggtgccgg
    15301 taagcccatc gtttttgcca gtaaagcgat gctttgctcg cgctggctgc gggttaacgc
    15361 atcggcctca ctaaaggttg ccagtacgcc ctgaataaaa gcgccgtttt tttctgcata
    15421 gggacgagct gccagataaa acgatccagt ttgattgaga tcggtgccgt ctttcagcac
    15481 ccgcacgccg ccctgtaata atgcagcaga gtagtaggga tcccagatag cccaggcgtc
    15541 aacgttacct tgctggaacg cggcgcgggc atcagcgggc gtcaggtaag tgggttggat
    15601 atcggtaaac ttaagtccgg cctgacgcag tgcacgcagt aaaaggttgt gtgaactgga
    15661 acctttctga aaggcaactt tgtgaccttt aagatcggct acggttttga tcgggctgtt
    15721 ttctgccacc agaatcactt cggctttggg cttcggtggc tcgacgccca catataccaa
    15781 atcagccccg gcagcctggg caaagattgg cggaatatcc ccggtactgc cgagatcaat
    15841 actgccaacg tttaaggctt ccaacatttg cggacccgcg gggaactcca cccaggagat
    15901 ttttgattgc ggatagcgtt tttccagtaa ctggtggctt tttgccagta ccataccaat
    15961 actgcctttc tgatagccta tacataacgc ttcaggcgag gattctgcag caaccgcaat
    16021 cgtagagacg ctaagcaatc ccaccagcgc cagtttaatg atgttacgca tgggcattac
    16081 ctcgcagaga cagaaggtca ggaacctgaa catcgcggcg gtgcaatgcc tgccagaaag
    16141 tttctagcgc ggtatcaaga cgggtttgca gatttggcgt gaactggggt ctgtgatggt
    16201 aatcaattac ttgtgagtca tcggcaaaca cgccgtgcag gatctcctga gctttcagtg
    16261 cgcttaaaac tggtttaagg gcataatcga ccgccagcag atgggccacg gtaccgcccg
    16321 tcgccagcgg tagcaccact ttgccttgca aagcgcgctc tggcagcagg tcgagcaggg
    16381 ttttcagcgc gccggaatag gcggctttat acacaggtgt agcgactatc agtccatcag
    16441 cctgttgcag ctgttcggtg aaggtcttga gtgccggact atcgaaacga gcataaagca
    16501 gatcttccgg gacgaagttt tgcagattcc agtgataaac ctctacatcc aggccattta
    16561 gtttttcccg cgcatattcc agcaaggagc tggagcgaga aggaaagcga ggactacccg
    16621 ccagggtgat gacacgcata ctctctcctt ataaccaatt gttctttttt tgttaacatt
    16681 gataacaatt cggtcagtct gtcggagaga caagaaaatg ccaaatataa attttgtgta
    16741 tctttttctg aaaataaact aaagaaaggg ctttatatat cacgcatatt tatttgttgg
    16801 atagtcatta gatgttgaat caatgaatta ctcgttcagt taatatttaa atattcatga
    16861 aatctataaa ttaaagattt gtcacttatt ggatttagta tttttgattt aaatgacggt
    16921 caattattgt tattattaag tctaatgtca tttaaaggca ttatcatatt tacgaagaga
    16981 tcaggatgat gacgatgaaa aaaagtgtat tgacggcgtt tataactgtg gtatgtgcaa
    17041 cgtccagcgt tatggcagct gatgataatg ctatcacgga tggcaaagta acatttaatg
    17101 gtaaagttat tgctccagct tgtaccctgg tagctgcgac gaaagattca gtagtcacat
    17161 tgccaaatgt cagcgccacc aagttgcaaa ctaatggagc agtctctggc gttaaaactg
    17221 atgtaccaat tgccttagaa ggctgtgatg ttactgtaac taaaaatgcg acgtttacct
    17281 ttagtggtac ggctgacggc gtgcaaccta cagcatttgc caaccaggct accaccgatg
    17341 cagc
//
LOCUS       DADMJB010000086        17149 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.086, whole genome shotgun sequence.
ACCESSION   DADMJB010000086 DADMJB010000000
VERSION     DADMJB010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17149)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17149)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17149
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.086"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(176..880)
                     /locus_tag="JN078_002469"
     CDS             complement(176..880)
                     /locus_tag="JN078_002469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HAY9041638.1"
                     /translation="MDRFPRSDSIVQPRAGLQTYMAQVYGWMTVGLLLTAFVAWYAAN
                     SAAVMELLFTNRVFLIGLIIAQLALVIVLSAMIQKLSAGVTTMLFMLYSALTGLTLSS
                     IFIVYTAASIASTFVVTAGMFGAMSLYGYTTKRDLSGFGNMLFMALIGIVLASLVNFW
                     LKSEALMWAVTYIGVIVFVGLTAYDTQKLKNMGEQIDTRDTSNLRKYSILGALTLYLD
                     FINLFLMLLRIFGNRR"
     gene            complement(1017..1469)
                     /gene="moaE"
                     /locus_tag="JN078_002470"
     CDS             complement(1017..1469)
                     /gene="moaE"
                     /locus_tag="JN078_002470"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase catalytic subunit MoaE"
                     /protein_id="HAY9041639.1"
                     /translation="MAETKIVVGPQPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLG
                     DSVKALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHRIGELWPGDEIVFAGVTSA
                     HRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVEARESDQQAAKRW"
     gene            complement(1471..1716)
                     /gene="moaD"
                     /locus_tag="JN078_002471"
     CDS             complement(1471..1716)
                     /gene="moaD"
                     /locus_tag="JN078_002471"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase sulfur carrier subunit"
                     /protein_id="HAY9041640.1"
                     /translation="MIKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQSDRWAL
                     ALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPVTGG"
     gene            complement(1709..2194)
                     /gene="moaC"
                     /locus_tag="JN078_002472"
     CDS             complement(1709..2194)
                     /gene="moaC"
                     /locus_tag="JN078_002472"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HAY9041641.1"
                     /translation="MSQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMI
                     IDGRHHKGDVFATARIAGIQAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETL
                     CRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVEAD
                     D"
     gene            complement(2197..2709)
                     /gene="moaB"
                     /locus_tag="JN078_002473"
     CDS             complement(2197..2709)
                     /gene="moaB"
                     /locus_tag="JN078_002473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein B"
                     /protein_id="HAY9041642.1"
                     /translation="MSQVSTEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHV
                     VDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFDREVEGF
                     GEVFRMLSFEEIGTSTLQSRAVAGVANKTLIFAMPGSTKACRTAWENIIAPQLDARTR
                     PCNFHPHLKK"
     gene            complement(2731..3720)
                     /gene="moaA"
                     /locus_tag="JN078_002474"
     CDS             complement(2731..3720)
                     /gene="moaA"
                     /locus_tag="JN078_002474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HAY9041643.1"
                     /translation="MASQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPSGVTNK
                     GFLTVDEIRRVTRAFASLGTEKVRLTGGEPSLRRDFTDIIAAVRENDAIRQIAVTTNG
                     YRLERDVANWRDAGLTGINVSVDSLDARQFHAITGQDKFNQVMAGIDAAFEAGFEKVK
                     VNTVLMRDVNHHQLDTFLNWIQHRPIQLRFIELMETGEGSELFRKHHISGQVLRDELL
                     RRGWIHQLRQRSDGPAQVFCHPDYAGEIGLIMPYEKDFCATCNRLRVSSIGKLHLCLF
                     GEGGVNLRDLLEDDTQQQALEARISAALREKKQTHFLHQNNTGITQNLSYIGG"
     regulatory      complement(3708..3852)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            4117..5025
                     /gene="yvcK"
                     /locus_tag="JN078_002475"
     CDS             4117..5025
                     /gene="yvcK"
                     /locus_tag="JN078_002475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine diphosphate-N-acetylglucosamine-binding
                     protein YvcK"
                     /protein_id="HAY9041644.1"
                     /translation="MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDN
                     GGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLK
                     ALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTP
                     IQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMV
                     YIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVL
                     EASDIPYRHDRQLLHNALEKALQALG"
     gene            complement(5217..7238)
                     /gene="uvrB"
                     /locus_tag="JN078_002476"
     CDS             complement(5217..7238)
                     /gene="uvrB"
                     /locus_tag="JN078_002476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HAY9041645.1"
                     /translation="MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSG
                     KTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYV
                     PSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLH
                     LTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD
                     EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE
                     NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL
                     LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV
                     SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVETQVDDLLSEIRQRAAINERVL
                     VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE
                     GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG
                     ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP
                     MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS"
     gene            complement(7817..8494)
                     /gene="bioD"
                     /locus_tag="JN078_002477"
     CDS             complement(7817..8494)
                     /gene="bioD"
                     /locus_tag="JN078_002477"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706656.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HAY9041646.1"
                     /translation="MSKRYFVTGTDTEVGKTVASCALLQAAKAVGYRTAGYKPVASGS
                     EKTPEGLRNSDALALQHNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAG
                     LRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTA
                     QAIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGK
                     YINLALL"
     gene            complement(8487..9242)
                     /gene="bioC"
                     /locus_tag="JN078_002478"
     CDS             complement(8487..9242)
                     /gene="bioC"
                     /locus_tag="JN078_002478"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HAY9041647.1"
                     /translation="MATVNKQAIAAAFGRAAAHYEQHAELQRRSADVLLAMLPQRKYT
                     HVLDAGCGPGWMSRHWRERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATA
                     TFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERP
                     HANRFLPPDEIEQSLNGVHYQHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRIL
                     TRSQLQRLQLAWPQQQGRYPLTYHLFLGVIARE"
     gene            complement(9229..10383)
                     /gene="bioF"
                     /locus_tag="JN078_002479"
     CDS             complement(9229..10383)
                     /gene="bioF"
                     /locus_tag="JN078_002479"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HAY9041648.1"
                     /translation="MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNF
                     SSNDYLGLSHHPQIIRAWQQGAEQFGVGSGGSGHVSGYSVAHQALEEELAEWLGYSRA
                     LLFISGFAANQAVIAAMMAKEDRIVADRLSHASLLEAASLSPSQLRRFVHNDVTHLAR
                     LLASPCPGQQLVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRG
                     SCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYNTSMPPAQAQAL
                     RASLAVIRRDEGDARREKLVSLIARFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQL
                     AEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG"
     gene            complement(10380..11420)
                     /gene="bioB"
                     /locus_tag="JN078_002480"
     CDS             complement(10380..11420)
                     /gene="bioB"
                     /locus_tag="JN078_002480"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HAY9041649.1"
                     /translation="MAHRPRWTLSQVAELFEKPLLDLLFEAQQVHRQHFDPRQVQVST
                     LLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAW
                     KNPNERDMPYLEQMVQGVKDLGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEF
                     YGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPES
                     VPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMC
                     FMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMT
                     PDTDEYYNAAAL"
     gene            11507..12796
                     /gene="bioA"
                     /locus_tag="JN078_002481"
     CDS             11507..12796
                     /gene="bioA"
                     /locus_tag="JN078_002481"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HAY9041650.1"
                     /translation="MTKDDLAFDQRHIWHPYTSMTSPLPVYPVVSAEGCELILSDGRR
                     LIDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQP
                     LECVFLADSGSVAVEVAMKMALQYWQAKGEVRQRFLTFRNGYHGDTFGAMSVCDPDNS
                     MHNLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAG
                     GMRMYHPEWLKRIRKMCDREGILLIADEIATGFGRTGKLFACEYAEIAPDILCLGKAL
                     TGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQ
                     QVAAIEVQLREQLAPARDAEMVADVRVLGAIGVVETTRPVNMAALQKFFVEQGVWIRP
                     FGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ"
     gene            12855..13331
                     /locus_tag="JN078_002482"
     CDS             12855..13331
                     /locus_tag="JN078_002482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase inhibitor"
                     /protein_id="HAY9041651.1"
                     /translation="MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTK
                     SFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTG
                     YDGAAPPKGETHRYIFTVHALDVEHIDVDEGASGAMVGFNVHFHSLASASITAMFS"
     gene            13483..14766
                     /locus_tag="JN078_002483"
     CDS             13483..14766
                     /locus_tag="JN078_002483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative acyl-CoA thioester hydrolase"
                     /protein_id="HAY9041652.1"
                     /translation="MNTFSVSRLALALAFSVTLTACSSTPPDQRPSDQTAPGTSSRPI
                     LSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVD
                     AAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPA
                     DWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENT
                     LGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVT
                     NSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFN
                     AFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVD
                     DNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK"
     gene            complement(14907..17144)
                     /locus_tag="JN078_002484"
     CDS             complement(14907..17144)
                     /locus_tag="JN078_002484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000477909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydratase"
                     /protein_id="HAY9041653.1"
                     /translation="MFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMD
                     KLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVF
                     GLSAAQRYGGIFVPPHIAIIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGE
                     LVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVG
                     PGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYY
                     DGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLL
                     DKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDL
                     AKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQM
                     SAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQ
                     PLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEF
                     TLSRRDPGYVGRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMV
                     YAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEV
                     GDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFN
                     KNRQM"
BASE COUNT         3983 a         4662 c         4378 g         4126 t
ORIGIN      
        1 tattcaccat caataaattt aaacccacgc atacaaaata cttttgtatt tatggatacg
       61 gaaaacgctt ccgctcggcc ataaggcgta ttttatacct ggtacttgtt aagtgtcgtt
      121 tttagtaaga aaagaaatcc cgacacatgg ccgggatatt gatggtgaaa aagaattaac
      181 ggcggttgcc aaaaattcgc agcaacatca ggaacaggtt gatgaagtcc agatacaagg
      241 ttaacgcgcc aagaatggaa tatttgcgca ggttcgacgt gtcgcgggta tcaatctgct
      301 cacccatatt tttcaatttc tgagtgtcat acgccgtcaa tccgacaaag acaatcacgc
      361 cgatgtaggt aactgcccac atcaatgctt cgcttttcag ccagaagttg accagcgatg
      421 ccagcacaat gccgattaac gccataaaca gcatattgcc aaagccactt aaatcgcgct
      481 tcgtggtgta accgtacagg ctcattgcgc cgaacatccc ggcagtaacg acgaaagtac
      541 tggcgataga agcagcggta tagacaatga atatactgga aagcgtaaga cccgtcagcg
      601 ccgaataaag cataaagagc atcgtcgtta cacctgcgct cagcttttga atcatcgctg
      661 ataacacaat aaccaatgct aattgcgcga tgatcagacc gattaaaaag acacggttag
      721 tgaacaacag ctccatcacg gccgcggaat tagccgcata ccaggcaaca aatgcggtca
      781 gcaacaagcc aacggtcatc cagccataga cttgcgccat ataagtttgc aagccagccc
      841 ggggttgtac gattgaatca gaacgtggga atctgtccat gacgatctcc tgaagatata
      901 aggaatatct taaggatact gcaaaatgat gaggctgtgc atcgacgcag cgtaaacgca
      961 tgtactgagc ggtgaaattg ccggacgcag cggtgcctta tccggctaac aaaaaactac
     1021 cagcgttttg ccgcctgctg atcgctctcc cgagcttcaa cccagcggtc gccttccggc
     1081 gtggcttcgc gcttccagaa cggtgcgcgg gttttgagat aatccataat aaactgcccg
     1141 gcttcaaacg cactgctgcg atgcgcactg gtgacaccgg caaaaacgat ttcatcgccc
     1201 ggccataatt ccccgatgcg gtgaatcaca gtgacgcgcc ccagcggcca gcggttacgc
     1261 gcttcatcaa caatttctgc cagtgctttt tcagtcattc ccggatagtg ttcgagggtt
     1321 aatgctttga cgctgtcgcc caggttatgg ttgcgcacct taccagtaaa ggtgactacc
     1381 gcaccgtctt cgtcacgctc cgccagccac gggtactctt ctcctacgct gaacggctgc
     1441 ggaccaacaa caattttggt ttctgccatc ttaacctccg gttaccggcg ggaagaaagc
     1501 tacttcgtcg ccgtcagtca gcggatggtc aaaactcacc agcgtctggt tgacggcagc
     1561 cagtaatttg ccatcttcca gcgccagcgc ccagcgatcg ctctgcgcag ccatgtgctg
     1621 gcgtaacgct tcaacagttg ggaaatccgc agccacttcg gttgcatctg ttcccaccaa
     1681 ctcgcgcacc tgcgcgaaaa aaagaacttt aatcatccgc ttccacctta aagtcacccg
     1741 acttgccgcc gctcttcgcc agcaaacgta ccggaccaat caccatatct ttttgcaccg
     1801 ctttgcacat gtcataaatg gtcagcgccg ccacggaggc cgcggttaat gcttccattt
     1861 cgacaccggt tttcccggtc aggcggcata aggtttctat acgcacccga ttgtgctccg
     1921 gctcggcctg taaattgact tcaactttgc tgagcatcag cggatgacag agcgggatca
     1981 gatcccaggt gcgttttgcc gcctgaatac cggcaatacg cgcagtggca aatacgtcgc
     2041 ctttgtggtg gcgaccatca ataatcatcg ccagcgtctc gctgcgcatg gtgacaaagg
     2101 cttccgcccg cgcttcacgc acggtttccg ctttggcgga gacatccacc atgtgcgctt
     2161 cgccagcggc gttgatatgg gtcagttgcg acatacttat ttcttcaaat gtggatggaa
     2221 attacacgga cgcgtacggg catccagctg cggcgcgatg atattttccc atgcggtacg
     2281 gcacgctttg gtcgaacccg gcatggcgaa aatcagcgtt ttgttggcga cgcccgcaac
     2341 cgcacgagat tgcaacgtgg aagtgccaat ctcttcaaac gacaacatcc ggaacacttc
     2401 accaaaacct tcaacttcac ggtcgaacaa cggcagcaat gcttcgggag cctgatcacc
     2461 ttccgtcagg ccagtaccac ccgtaatcaa taccacttgt acatcgtcgc tggcgatcca
     2521 cgcagatacc tgagcgcgaa tagcgtagcg gttttctttc acaatggctt tatcgacaac
     2581 gtgatggccc gcttcttgcg ccgaatcgcg cagatagtga ccggaggtat cgtcttcttc
     2641 accgcgacga ttagaaaccg taagaatagc aatacgggtc gggataaatt cagtgcttac
     2701 ctgactcatc tgatctctcc ttttgacgtt ttagccgcca atgtacgata agttttgcgt
     2761 aataccggtg ttgttttgat gcaggaaatg ggtctgtttc ttctcccgca gcgccgctga
     2821 aatacgcgct tccagcgcct gttgctgggt atcgtcttcc agcagatcgc gcaggttaac
     2881 gccgccttca ccaaacaggc agagatggag tttaccaatg gaggaaacgc gcaggcggtt
     2941 gcaagtggcg cagaagtctt tttcatacgg catgataagg ccaatctctc cggcgtaatc
     3001 tggatggcaa aagacttgcg cgggaccgtc gctgcgttga cgtaattggt ggatccagcc
     3061 gcgacgcagt agctcgtcac gcagaacctg accagagatg tgatgcttac ggaagagctc
     3121 gctgccctcg cccgtttcca tcagttcgat gaaacgcagc tggatagggc gatgctggat
     3181 ccagttcaga aaggtgtcga gctggtgatg attaacatca cgcatcagca cggtattgac
     3241 tttgaccttc tcaaaaccgg cctcaaatgc agcatcaatc cctgccatga cctggttgaa
     3301 tttatcctgc ccggtaatag cgtgaaactg gcgggcgtcc agactgtcga cactgacgtt
     3361 aatgccagta agtcccgcat cgcgccagtt cgccacatcg cgttccagac ggtaaccatt
     3421 ggtggtgacc gcaatctggc ggatagcgtc gttttcccgc acagcggcga tgatatcggt
     3481 aaagtcgcgg cgtaaagacg gctcacctcc tgtcaggcgc actttttcgg tgcccagact
     3541 ggcgaaggcg cgcgtaaccc ggcgaatttc atcgacggta agaaagcctt tattggtgac
     3601 gccgctcggt ttgtagccat ccggcaggca gtaggtgcaa cgaaagttac acacatcggt
     3661 aatcgacagg cgcaagtagt aaaacttacg cgcaaatgca tcagtcagtt gtgaagccat
     3721 gtacaccttt ccagatacgg gaggcgaagt catttcttcc ttcgccctgg tggcaatctt
     3781 tacgagcatt gtcacggcca aagcaccgta tcagttgacc caggtgcaga ggctagagtg
     3841 tttagtggtt aagccgatac tagcgtgtaa atgagatttt taccatccac actttcgcta
     3901 tgcaatcatg tatatagcgt catgatcgtg ctatttcgct acagaataag ggaaaatggc
     3961 agttttactt tgatatacat catcagggag gcatagcgtg catcgtcctt tagaggtaga
     4021 agaaaatagt ttgtatcctc aatattggca ggttaattgc tgtttccccg caatttgcgc
     4081 tactgtagcg cggataatct gactccagga aactatatgc gcaatcgtac gctggctgat
     4141 cttgatcgtg tcgttgctct cggcggaggg catggactgg gacgcgttct ctcatcactt
     4201 tcgtctttgg gttctcgttt aacgggtatc gtcaccacca cggataatgg tggctcgacg
     4261 gggcgtattc gccgttcaga aggcggcatt gcctggggcg atatgcgcaa ctgcctcaac
     4321 caactgataa cggaaccgag cgtcgcctcc gcgatgtttg aataccgttt tggcggcaat
     4381 ggcgaacttt ccgggcacaa ccttggaaac ttgatgttaa aggcgctgga tcaccttagc
     4441 gtgcggcctc tggaagccat caatttaatt cgtaatctgc tgaaagtgga tacgcatttg
     4501 attccaatgt cagagcatcc cgtcgatctg atggcgattg acgatcaggg gcatgaagtt
     4561 tacggcgagg tcaatatcga ccagttaact acgccgattc aagagttatt attaacgccg
     4621 aatgtacccg caacgcgtga ggcagttcac gctatcaatg aagcggatct catcattatt
     4681 gggcctggca gtttttatac cagcctgatg ccaattctgc tgctgaagga aatcgcccag
     4741 gcattacgcc gcacgccagc gccgatggtt tatatcggca atctggggcg tgagttgagt
     4801 ttacctgcgg ctaatttgaa gctggaaagc aagctggcaa ttatggagca gtatgttggt
     4861 aaaaaagtca ttgatgcggt catcgtcggg ccaaaagtgg atgtctcggc ggtgaaagag
     4921 cggattgtga tccaggaggt actggaggcc agcgatattc cgtatcgtca tgaccgccag
     4981 ttgttacata acgcgctgga aaaggcgtta caggctttag gttaacggaa atccgaagga
     5041 aaattccggc ttcctattga agacaaagtg cgcgttgttt atgccggatg cggcgtgaac
     5101 gccttatccg gcctacaaac cgcgcaaatt caatatattg cggagaaaat gtaggcctga
     5161 taagcgtagc gcatcaggct gttttccgtt tgtcatcagt cttcttcgct atcctgttac
     5221 gatgcggcaa taaacaactc acgcaactga tgcaactggt cacgaatttg tgccgcttct
     5281 tcgaactcca gattctgcgc gtgttgcatc atcagccctt ccagttcatg gattttctgc
     5341 tgcaacgctt tcggcgacat atccatcggc acattatccg gctcaacaat cgggcgcgat
     5401 tttcctctgc ccttcgcttt ggttttggca atgttctgcc ccagcgccag gatatcgacc
     5461 actttcttgt tcaagccttg cggcgtaatg ccgtgttcct cgttgtactt ctgctgtttc
     5521 tcacggcgac gttcggtttc gccaatcgct ttcgccattg atggggtgat cttatcgccg
     5581 tagagaatcg ctttaccgtt aacgttacgt gccgcacgac caatggtctg gatcaacgaa
     5641 cgttcggaac gcaggaagcc ttctttgtca gcgtcgagga tcgccaccag cgacacttcc
     5701 ggcatatcca gaccttcgcg cagtaagttg atccctacca gcacgtcgaa ctcacccaga
     5761 cgcaagtcgc ggataatctc catacgttcg acggtgtcga tatctgagtg aagataacgc
     5821 acgcgctcgc catgttcttc gagatattcg gtaagatctt ccgccatccg cttggtcagt
     5881 gtggtgacca gtacgcgttc gttaattgcc gctcgctgac gaatctccga aagaagatca
     5941 tcaacctgtg tctccaccgg ccgcacttcg ataatcgggt caagcaatcc ggttggacgc
     6001 accacctgat ccaccacatc gccgccggat ttttccagct cgtaattacc cggcgtcgcc
     6061 gaaacataga tggtttgcgg cgctaatgct tcgaactctt caaacttaag cggacggtta
     6121 tccagcgctg atggcaggcg gaagccgtac tccaccagtg tctctttacg cgcccggtca
     6181 ccgcgataca tgccgccaat ttgtggaatg gtgacgtgag attcatcgac gaccagcagc
     6241 ccatcggcag gcaggtaatc aaacagcgtc ggcggtggct cacccggtcc acgaccggag
     6301 aggaagcgcg agtagttttc aatccccgaa cagtagccca gctcgttcat catctccaga
     6361 tcaaactggg tacgctgggt cagccgctgc tcttccagca gtttgttgtt ttccaacagc
     6421 actttgcgtc tggcggccag ttcttctttg atctcctcca tcgcctgtac gatgcgctcg
     6481 cgcggtgtga cgtagtgcgt tttcgggtag atggtaaaac gtggaatagt ggaaacaatc
     6541 tgcccggtca gcgggtcaaa taacgacaat cgttccactt cctcgtcaaa cagttccacg
     6601 cgaagtgcaa tgtcatccga ttctgccggg aagatatcaa tcacctcgcc acgaacgcgg
     6661 aaagtaccac gctggaatgc ttgatcatta cgagcgtatt gcagctccgc cagtcggcgc
     6721 agaatcgcgc gctgatcgat aatcataccg accgtgagat ggagcatcat cttgagatat
     6781 aaatcaggat cgcccagacc ataaatcgcg gaaacagagg ccactacaac cacatcacgc
     6841 cgctccagca tcgctttggt ggcggataaa cgcatctgct caatatgttc gttaaccgag
     6901 gcatctttct caatgaaagt gtcggaactc ggtacatagg cttccggctg atagtagtcg
     6961 tagtaggaga cgaaatactc caccgcgttt tccgggaaga actctttcat ttcgccatac
     7021 agctgggccg ccagcgtttt gttgggcgca agtaccatgg ttgggcgctg aaggtcagca
     7081 atgacattgg caatggtgaa ggttttccct gagccagtca cgccaagtaa cgtctggtgc
     7141 gccaggccat cttccagccc ctcttcgaga cgtcgaatcg cctctggctg atcgccagaa
     7201 ggtttaaaag cggaattcag tttgaacggt ttactcatga gtcgctacct gaaggagttg
     7261 ggcgggcagg tatgtaattt tactcgtcgt acttaattat gccaacaaat tatactggat
     7321 aaaaaaacag ttcatcacca taatatttct gatacagcgt aaactccgct gtcaatcatg
     7381 agcaaaattt actctgtggc gagataaaac tccggcctta ccgggttatc cccaaagcaa
     7441 cggctttttt aacatttgtc aagatgagtg atgacagttt tatggcaaga gatgcctgtt
     7501 cagtgactgc cattgcattt atctaaccag ttaaaaaata aaagatattt ctttgagccg
     7561 tctttaacgc caattcgcgt gcaagccgcg tattctctcg cttgcctcgt gttttctaac
     7621 tctaatacac atggttatcc acaggaatag tggataactg tctccagccc ctatcccccg
     7681 ccgcctgggc aattcccaca ttcgccgcat gaggcggaag taaaattttt ttcgtgatta
     7741 ttttagaatt taattggtta aattgcagtc aatcgaagac gcgatctcgc tcgcaattta
     7801 accaaataca gaatggctac aacaaggcaa ggtttatgta ctttccggtt gccgcatttt
     7861 ctggattttc tgcaagccag gggatctctc ccagcagcgg cgcgggaatc atgcgggtga
     7921 gcgtggtcat atattcagcg tgacgttttc ccggaggcgt aacatcgttc gccacccaac
     7981 ccgccagagt cagtccggcg tgttgtattg cctgcgcagt caacatcgcg tgattaatac
     8041 agccgagttt cacaccaact accagtatca ccggcagttg ttcctgtgtt acccaatctg
     8101 caaaagtgaa agtgtcagaa agcggcgtaa accagccgcc agcaccttcc actaacaccc
     8161 agtcagcctg ttgttcaagc gcgcgtaatc cggcgctcat taccaatgat tctatcggcc
     8221 tgccctcttg cgcgctgatg atgtgcggcg aagtgggttc tgcgaaggtg taaggattta
     8281 ctgttgcgta atccagctgc aggctgctgt tgtgctgtaa cgccagcgcg tcactattac
     8341 gtaagccttc cggggtcttt tcgctgccag aggcgaccgg tttataacct gccgtccgat
     8401 aacctactgc cttcgcggct tgtaaaagtg cacaactggc gacggttttc cccacttcgg
     8461 tatccgttcc ggtgacaaaa taacgtttac tcacgagcaa tcactcccaa aaaaagatga
     8521 tacgtcagag gatatcgccc ctgttgttgc ggccaggcca gttgcaatcg ctgcaattgc
     8581 gaacgcgtta atattcgcgg gtcgcgccct tcatgaagat gcgtagcacc gatgcctttc
     8641 agcgaacgca tggcactgag cgcatcatca aaccatagtg tgatgggctg aatatgatgt
     8701 tgataatgca cgccgttcag cgactgttcg atttcatctg gcggtaaaaa gcgattagca
     8761 tgcggacgct cgtccaccgc ctgccacgcc tgatgcagtt cgggtaacga tccctgcacc
     8821 agcgtggtaa acgccaccac gcctccgggg cgcaccaccc gatacagctc gcggagtgcc
     8881 gtggataaat taccgcacca ctgcaccgcg agattgctcc atgcaagatc gaacgtcgca
     8941 gtcgctaacg gcagggattc gatatctccc gccagataat ggtctgcagc atctttctgg
     9001 cgggcttgca caagcattgg cggtgagaga tctaacgccg tcacctgtgc gtgacgctct
     9061 cgccagtggc ggctcatcca gcctggccca caccccgcgt ccagtacgtg ggtgtattta
     9121 cgctgtggga gcattgccag taagacgtca gcactccggc gctgtaactc tgcgtgttgc
     9181 tcatagtgcg cggctgcccg accaaatgcc gctgcaatgg cttgtttatt aaccgttgcc
     9241 atgcagcacc tccagcagac ggtcgatatc ctgcatttca tgcgctgcgg ttagcgttaa
     9301 gcgcagtcgc gcagtaccag cgggtacggt tggcgggcga atcgccgtga cccagcagcc
     9361 ttgctggcgc agtttttctg ccagttgtaa cgcacggctg ttatcaccga cgatcaatgg
     9421 ctggatggcg ctgcatgaat cagcaagcgt aaacggcaaa tcctgtactc cggcacgaaa
     9481 acgcgcaatg agtgacacca gtttttcgcg ccgtgcatcc ccctcatcac ggcgaatgac
     9541 cgccagcgac gcacgtaatg cctgcgcctg agcgggcggc atactggtgt tgtagataag
     9601 gtggcgggcg aattgcagca gataatccgc caccgtactg gagcaaagca ccgctgcccc
     9661 gctgacgcca aatcctttgc caaaagtcac caccagcaat tctggtttta ccttttgcag
     9721 ccagcagctg ccgcgcccct gctccccgat aacgcccgtg ccgtgggcat catcgaccat
     9781 caaccagcca ttgtgctgtt gcgttacctg ctggatttcc gccagtggcg cactatcgcc
     9841 gtccatgctg aacacgcctt ctgtcaccac cagttgctgc cccggacagg gggaagcaag
     9901 cagtcgcgcc agatgagtga catcgttatg aacaaaacgg cgaagctgcg acgggcttaa
     9961 actggcagcc tccagcaatg aggcatggct aagccggtca gcgacaatgc ggtcctcttt
    10021 tgccatcatc gcggcaatga ccgcctgatt agcggcaaaa ccagagataa atagcagtgc
    10081 ccgcgaatag cccagccact cggccagttc ttcttccagc gcctgatgcg caacgctata
    10141 accgctgacg tgaccggaac cgccgctacc gacgccaaat tgctccgcac cctgctgcca
    10201 ggcacggata atttgcggat gatggcttaa acctaaataa tcgttactgg aaaagttcag
    10261 atactggcga tcatccgcca ccagccagcg tccggctcct tgcgccactg gataacggcg
    10321 acgcagggca tcggcagcac gccgcgcatc gagcgccgcg ttgattttct cctgccagct
    10381 catagtgctg ccgcgttgta atattcgtca gtatccgggg tcatcagcgc ctgttcaaga
    10441 cgttgctgtt gttcgttatc ccctgccagc acggcagttt gctgcggatt tagccccagt
    10501 ttgcggaaca gttgcaggtc tttatcttct tccggattcg gcgtggtcag cagtttgcaa
    10561 ccgtagaaaa tcgagtttgc gcctgccata aagcacatcg cctgagtctg ttcgttcatc
    10621 tgctcgcgtc cggcagaaag gcgcacgtaa gaggtcggca tcatgatccg cgcgaccgca
    10681 atggtgcgaa taaaatcaaa ggcatcaacg tcatcgttat cggcaagcgg cgtgcctttc
    10741 accttcacca gcatgttgat tggcacgctt tccggcggcg tcggcaggtt tgccagttgc
    10801 agcaataatc cggcgcgatc ttttaccgtt tcgcctaagc ccacaatgcc gccagaacag
    10861 actttgatcc cggcatcgcg cactttttcc agcgtatcga ggcgttcctg ataagtgcgg
    10921 gtggtgatga tattgccgta aaactccggc gaggtgtcga ggttgtggtt gtagtaatcc
    10981 agcccggcgt tcgcgaggcg ctgcgcctga gattcactca acgtgcccag cgtcatacac
    11041 gcctccagcc ctaaatcttt taccccctgc accatctgct ccaggtacgg catatcgcgt
    11101 tcattgggat tcttccacgc cgcgcccatg caaaaacgcg tcgatcccgc cgctttcgct
    11161 ttgcgcgccg actccagcac ctgttcaact tccatcaacc gctcggcttc cagaccggtt
    11221 ttatagcgcg agctttgcgg gcaatatttg caatcttccg ggcaagcacc ggttttaatc
    11281 gacagcaacg tgctgacctg cacctgacga ggatcgaaat gctggcgatg cacctgctgc
    11341 gcttcaaaca gcagatccag caacggtttt tcaaataatt ctgcgacttg cgacaatgtc
    11401 cagcgtgggc ggtgagccat ggggcttctc caaaacgtgt tttttgttgt taattcggtg
    11461 tagacttgta aacctaaatc ttttcaattt ggtttacaag tcgattatga caaaggacga
    11521 tcttgccttt gaccaacgcc atatctggca cccatacaca tccatgacct ccccgctgcc
    11581 ggtttatccg gtggtgagcg ccgaaggttg cgagctgatt ttgtctgacg gcagacgcct
    11641 gattgacggt atgtcgtcct ggtgggcggc gatccacggc tacaatcacc cgcagcttaa
    11701 tgcggcgatg aagtcgcaaa ttgatgccat gtcgcatgtg atgtttggcg gtatcaccca
    11761 tgcgccagcc attgagctgt gccgcaaact ggtggcgatg acgccgcaac cactggaatg
    11821 cgtttttctc gcggactccg gttccgtagc ggtggaagtg gcgatgaaaa tggcgttgca
    11881 gtactggcaa gccaaaggcg aagtgcgcca gcgttttctg accttccgca atggttatca
    11941 tggcgatacc tttggcgcga tgtcggtgtg cgatccggac aactcaatgc acaacctgtg
    12001 gaaaggctat ctgccagaaa acctgtttgc tcccgccccg caaagccgca tggatggtga
    12061 atgggatgaa cgcgatatgg ttggctttgc ccgcctgatg gcggcgcatc gtcatgaaat
    12121 cgcggcggtg atcattgaac cgattgtcca gggcgcaggc gggatgcgca tgtaccatcc
    12181 ggaatggtta aaacgaatcc gcaaaatgtg cgatcgcgaa ggtatcttgc tgattgccga
    12241 cgagatcgcc accggatttg gtcgtaccgg caaactgttt gcctgtgaat atgcagaaat
    12301 cgcgccggac attttgtgcc tcggtaaagc cttaaccggc ggcacaatga ccctttccgc
    12361 cacactcacc acgcgcgagg ttgcagaaac catcagtaac ggcgaagccg gctgctttat
    12421 gcacgggcca acttttatgg gcaatccgct ggcctgcgcg gctgcaaacg ccagcctggc
    12481 gattctcgaa tctggcgact ggcagcaaca ggtggcggct attgaagtac agctgcgcga
    12541 gcaacttgcc cccgcccgtg atgccgaaat ggttgccgat gtgcgcgtgc tgggggcaat
    12601 cggcgtagtc gaaacaactc gtccggtgaa tatggcggcg ctgcaaaaat tctttgtcga
    12661 acagggggta tggatccggc cttttggcaa actgatttac ctgatgccgc cctatattat
    12721 tctcccgcaa cagttgcagc gtctgaccgc agcggttaac cgtgcggtgc aggatgaaac
    12781 atttttttgc caataacggg aagtcagcgt gtgggtttct ggctacactt tctgcaaact
    12841 agaaaggagg gttcatgaaa ctcatcagta atgatctgcg cgatggcgat aagctgccgc
    12901 atcgtcatgt ctttaacggc atgggttacg atggcgataa tatttcaccg catctggcgt
    12961 gggatgatgt tcctgcggga acgaaaagtt ttgttgtcac ctgctacgac ccggatgcgc
    13021 caaccggctc cggctggtgg cactgggtag ttgttaattt acccgctgat acccgcgtat
    13081 taccgcaagg gtttggctct ggtctggtag caatgccaga cggcgttttg cagacgcgta
    13141 ccgattttgg taaaaccgga tacgatggcg cagcgccgcc gaaaggcgaa acccatcgct
    13201 acatttttac cgttcacgcg ctggatgtag agcatattga tgtcgatgaa ggagccagcg
    13261 gcgcgatggt cgggtttaac gttcatttcc actctctggc aagcgcatcg attaccgcga
    13321 tgtttagtta atcactctgc cagatggcgc aatgctatct ggtatcactt aaaggtatta
    13381 aaaacaactt tttgtctttt taccttcccg tttcgctcaa gttagtataa aaaagcaggc
    13441 ttcaacggat tcatttttct atttcatagc ccggagcaac ctgtgaacac attttcagtt
    13501 tcccgtctgg cgctggcatt ggcttttagc gtgacgctga ccgcctgtag ctcaacacca
    13561 cccgatcaac gtccttctga tcaaactgcg cctggtacct cttctcgccc gattctgtcg
    13621 gcaaaagaag cgcagaattt cgatgctcaa cactattttg catccctgac accaggtgct
    13681 gcagcgtgga atccttcccc gattaccctg cctgcgcaac ctgactttgt tgtcggcccg
    13741 gcgggcactc aaggtgtaac gcataccacg attcaggcgg cggtagatgc ggcaattatc
    13801 aagcgtacca acaagcgcca gtatattgcc gtgatgcctg gtgagtatca gggaacggtg
    13861 tatgtccctg ctgctccggg tggaattact ctgtacggta caggtgaaaa accgattgat
    13921 gtgaagattg ggctttccct tgatgggggc atgagccctg ccgactggcg tcacgacgtc
    13981 aacccgcgcg gcaaatatat gccaggtaaa ccagcgtggt atatgtacga tagctgccag
    14041 agcaaacgca gcgacagtat cggtgttctc tgctctgcgg tcttctggtc acaaaacaat
    14101 ggcctgcaac tgcaaaacct gaccatcgaa aacacgctgg gcgatagcgt agatgcaggt
    14161 aaccatccgg cggtggcact gcgtactgat ggtgaccagg tacagattaa caacgttaac
    14221 attctcggtc gtcagaacac cttctttgtc accaacagcg gtgtgcagaa ccgtctggaa
    14281 acgaatcgtc agccgcgtac gctggtgacc aacagctaca ttgaagggga tgtggatatc
    14341 gtttctggtc gcggcgcagt ggtgttcgat aacaccgaat tccgcgtggt gaactcacgt
    14401 actcagcaag aagcgtatgt gtttgcaccg gctacgctgt ccaacattta ctacggtttc
    14461 ctcgccgtaa acagccgttt caatgctttc ggtgatggtg tggcgcaact gggccgctcg
    14521 ctggatgttg atgccaatac caacggtcag gtggtgatcc gtgatagcgc catcaacgaa
    14581 ggttttaaca cggctaaacc gtgggccgat gcggtgatct ctaatcgtcc gtttgcgggt
    14641 aataccggca gcgtagatga taacgacgaa atacagcgca atctgaatga cactaactac
    14701 aaccgcatgt gggaatacaa taaccgcggc gtgggtagta aagtggttgc agaggcgaag
    14761 aagtaagagc aattaactat ttgccggatg cggcgtaaac gccttatccg gcctacggtt
    14821 cgatgcgatt tgtaggtcgg ataagatgcg caagcatcgc atccgacaat aagtgccgaa
    14881 tgcgacctac attcacatgg cgctttttac atctgacggt ttttattgaa gttaatcaaa
    14941 ctacccgcct tgataatctc gcgctcttca gcagtcagac tttccatata gagcgtaatt
    15001 tccgttaccg gcgcatcttc atggatcaca taacctttaa acgtcgtacc cggattatcc
    15061 agcgccgctt taatgccagg gatgtaaatg taatccccca cttcaaaggt tggcacttcc
    15121 gccatctgca gcggtaacat cccccagttg atgacgttag aacggtagcg tttagtcgcg
    15181 tactcttcgg caatattcgc cagaccgcca atcacacgct ggcagctcgc cgcctgttca
    15241 cgcgcagaac catcgcctgg tttcaccgca tataccatgc tgccaatttc agtttgcagc
    15301 ggatcaatat gctcctgacc agcaatctgc ttaatgcgcg caaacacctc tgtcagctcg
    15361 ctgacattcc ccgccagacg ctgattttcc agctcagcag tcgctttact tctgccaaca
    15421 taaccgggat cgcggcgtga cagggtaaac tccgccagac caatcggatt tgaacgataa
    15481 gaagaggttt caccggaagg aatcagttcg tcggtggtgg tcacttcgtc gaggatcttc
    15541 gagcacactt tcaggacgat attgtcagtc agcgcaccca attccggcca gtctttaatg
    15601 ttcggtccgt aaatcagcgg ttgctgagtt gcccctttca caaagccctg ataaacacgg
    15661 tttttatacg gcgttacatc gaaggcgtac tccggcacgt tgtcccagca atcaagttcg
    15721 ctggcagagg ttaaatagcc accgtttgcc gcagtcgcag cgatagaacg agcgtccatc
    15781 aacgccaccg ctgacatctg cccattagct ggcttagagc cttcgcggtt cgggaagtta
    15841 cgcgtggtgt ggcgaatact taatccgttg ttgattggcg tatcgcccgc gccaaagcat
    15901 gggccgcaga acgcggttct gatgattgcg cctgcgccaa tcaaatctgc taccacacct
    15961 tttttggcta aatccataaa caccggctgt gatgacgggt aaaccgccag cgagaaggtg
    16021 tcattgccac aggattgacc gcgcagtgca ttcgccgccg cgatgacgtt ttcgtagtta
    16081 ccgccagaac agcccgcgat aatcccctgc tgcactttca ggcgaccatt ttccacttta
    16141 tccagcagcg agagtttggc tttaccgtgc gccacgcgtt cggactcaat ttcaatctca
    16201 cgcagaatgt cggtcaggtt ctggttcagt gtgtcgattt catacacgtt gctcgggtgg
    16261 aacggcagcg caatcattgg tttgatggcg cttaaatcaa cgctgatgca gccatcgtag
    16321 tacgccatcg gttgagggtt aagctggcag taatcctggc cgcgaccgtg cagcgccagc
    16381 cagttatgca cttcttcatc agtttgccag acggagctta aacaggtggt ttccgtggtc
    16441 atcacgtcaa cgctgttacg gaaatcggta gagagcgcgc taacgcccgg tccaacgaac
    16501 tccatgactt tgtttttgac gtaaccgttt ttgaacaccg cgccaatgat agccagcgcc
    16561 acatcctgtg gccccacata cggcgcaggt tttccggtca gatgcaccgc aaccacgccc
    16621 ggatagtcga tatcccaggt gtcattaagc agctgtttta ccaactcacc gccgccctca
    16681 ccgactgcca ttgtccctaa tgcaccgtaa cgggtgtggc tgtctgaccc gaggatcatt
    16741 ttgcccccgc ctgccatcat ctcacgcata tattgatgga tgatcgcaat atgcggaggc
    16801 acaaaaatac cgccataacg ctgagctgcc gataaaccaa aaacatggtc atcaccgtta
    16861 atggtgccgc cgacggcgca gagtgagtta tggcagttgg tcagcacata cggcagcggg
    16921 aaacgttcca ttccggacgc tttagcggtc tgtacaatac caacaaaggt aatatcgtga
    16981 gaggctaatg aatcaaactt aattttaagt ttatccatat ttccggacgt attatgagaa
    17041 gagagaatag accaggcaat agtgcctttt ttggcttctt cttttttaat ttcgccggtg
    17101 aaatgttctt cggcaattat ttcgttatta ctggcgagaa acacgcctt
//
LOCUS       DADMJB010000087        17104 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.087, whole genome shotgun sequence.
ACCESSION   DADMJB010000087 DADMJB010000000
VERSION     DADMJB010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17104)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17104)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17104
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.087"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..303)
                     /gene="hlyE"
                     /locus_tag="JN078_002485"
     CDS             complement(<1..303)
                     /gene="hlyE"
                     /locus_tag="JN078_002485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin HlyE"
                     /protein_id="HAY9041654.1"
                     /translation="MTEIVADKMVEVVKNAIETADGALDLYNKYLDQVIPWQTFDETI
                     KELSRFKQEYSQAASVLVGDIKTLLMDSQDKYFEATQTVYEWCGVATQLLAAYILLF"
     gene            676..1095
                     /gene="umuD"
                     /locus_tag="JN078_002486"
     CDS             676..1095
                     /gene="umuD"
                     /locus_tag="JN078_002486"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translesion error-prone DNA polymerase V
                     autoproteolytic subunit"
                     /protein_id="HAY9041655.1"
                     /translation="MLFIKPADLREIVTFPLFSDLVQCGFPSPAADYVEQRIDLNQLL
                     IQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQLR
                     PTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAMR"
     gene            1095..2362
                     /locus_tag="JN078_002487"
                     /pseudo
     CDS             1095..2362
                     /locus_tag="JN078_002487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415702.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
     gene            complement(2408..2938)
                     /gene="dsbB"
                     /locus_tag="JN078_002488"
     CDS             complement(2408..2938)
                     /gene="dsbB"
                     /locus_tag="JN078_002488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbB"
                     /protein_id="HAY9041656.1"
                     /translation="MLRFLNQCSQGRGAWLLMAFTALALELTALWFQHVMLLKPCVLC
                     IYERCALFGVLGAALIGAIAPKTPLRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFA
                     TCDFMVRFPEWLPLDKWVPQVFVASGDCAERQWDFLGLEMPQWLLGIFIAYLIVAVLV
                     MISQPFKAKKRDLFGR"
     gene            complement(3084..4625)
                     /gene="nhaB"
                     /locus_tag="JN078_002489"
     CDS             complement(3084..4625)
                     /gene="nhaB"
                     /locus_tag="JN078_002489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)/H(+) antiporter NhaB"
                     /protein_id="HAY9041657.1"
                     /translation="MEISWGRALWRNFLGQSPDWYKLALIIFLIVNPLIFLISPFVAG
                     WLLVAEFIFTLAMALKCYPLLPGGLLAIEAVFIGMTSAEHVREEVAANLEVLLLLMFM
                     VAGIYFMKQLLLFIFTRLLLSIRSKMLLSLSFCVAAAFLSAFLDALTVVAVVISVAVG
                     FYGIYHRVASSRTEDTDLQDDSHIDKHYKVVLEQFRGFLRSLMMHAGVGTALGGVMTM
                     VGEPQNLIIAKAAGWHFGDFFLRMSPVTVPVLICGLLTCLLVEKLRWFGYGETLPEKV
                     REVLQQFDDQSRHQRTRQDKIRLIVQAIIGVWLVTALALHLAEVGLIGLSVIILATSL
                     TGVTDEHAIGKAFTESLPFTALLTVFFSVVAVIIDQQLFSPIIQFVLQASEHAQLSLF
                     YIFNGLLSSISDNVFVGTIYINEAKAAMESGAITLKQYELLAVAINTGTNLPSVATPN
                     GQAAFLFLLTSALAPLIRLSYGRMVWMALPYTLVLTLVGLLCVEFTLAPVTEWFMQMG
                     WIATL"
     gene            4847..5566
                     /gene="fadR"
                     /locus_tag="JN078_002490"
     CDS             4847..5566
                     /gene="fadR"
                     /locus_tag="JN078_002490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid metabolism transcriptional regulator
                     FadR"
                     /protein_id="HAY9041658.1"
                     /translation="MVIKAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVT
                     RTTLREVLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDNLL
                     SVRTNISTIFIRTAFRQHPDKAQEVLATANEVADHADAFAELDYNIFRGLAFASGNPI
                     YGLILNGMKGLYTRIGRHYFANPEARSLALGFYHKLSALCSEGAHDQVYETVRRYGHE
                     SGEIWHRMQKNLPGDLAIQGR"
     gene            complement(5618..7150)
                     /locus_tag="JN078_002491"
                     /pseudo
     CDS             complement(5618..7150)
                     /locus_tag="JN078_002491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309710.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SpoVR family protein"
     gene            7480..8778
                     /locus_tag="JN078_002492"
     CDS             7480..8778
                     /locus_tag="JN078_002492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid dehydrogenase"
                     /protein_id="HAY9041659.1"
                     /translation="MRVVILGSGVVGVASAWYLNQAGHEVTVIDREPGAALETSAANA
                     GQISPGYAAPWAAPGVPLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYM
                     ENKGRMVRLAEYSRDCLKALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIAVLEDA
                     GVPYQLLESSRLAEVEPALAEVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKF
                     RFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFDSYSTAMLKGIVDIPVYPLKGYS
                     LTIPIAQEDGAPVSTILDETYKIAITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMV
                     VRDLYPRGGHVEQATFWTGLRPMTPDGTPVVGRTRFKNLWLNTGHGTLGWTMACGSGQ
                     LLSDLLSGRTPAIPYEDLSVARYSRGFTPSRPGHLHGAHS"
     gene            8846..9847
                     /gene="dadX"
                     /locus_tag="JN078_002493"
     CDS             8846..9847
                     /gene="dadX"
                     /locus_tag="JN078_002493"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005005651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catabolic alanine racemase DadX"
                     /protein_id="HAY9041660.1"
                     /translation="MSARPRRTRVVKANAYGHGIERIWSALGATDGFALLNLEEAITL
                     RERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDIYLKVN
                     SGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAMARIEQAAEGL
                     ECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLSSEIIG
                     VQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMTVGTV
                     SMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRVPVVTV"
     gene            complement(10234..11970)
                     /locus_tag="JN078_002494"
     CDS             complement(10234..11970)
                     /locus_tag="JN078_002494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309713.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium/proton antiporter"
                     /protein_id="HAY9041661.1"
                     /translation="MDATTIISLFILGSILVTSSILLSSFSSRLGIPILVIFLAIGML
                     AGVDGVGGIPFDNYPFAYMVSNLALAIILLDGGMRTQASSFRVALGPALSLATLGVLI
                     TSGLTGMMAAWLFNLDLIEGLLIGAIVGSTDAAAVFSLLGGKGLNERVGSTLEIESGS
                     NDPMAVFLTITLIAMIQQHESSVSWMFVVDILQQFGLGIVIGLGGGYLLLQMINRIAL
                     PAGLYPLLALSGGILIFALTTALEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAW
                     LAQIAMFLVLGLLVNPSDLLPIAIPALILSAWMIFFARPLSVFAGLLPFRGFNLRERV
                     FISWVGLRGAVPIILAVFPMMAGLENARLFFNVAFFVVLVSLLLQGTSLSWAAKKAKV
                     VVPPVGRPVSRVGLDIHPENPWEQFVYQLSADKWCVGAALRDLHMPKETRIAALFRDN
                     QLLHPTGSTRLREGDVLCVIGRERDLPALGKLFSQSPPVALDQRFFGDFILEASAKYA
                     DVALIYGLEDGREYRDKQQTLGEIVQQLLGTAPVVGDQVEFAGMIWTVAEKEDNEVLK
                     IGVRVAEEEAES"
     gene            complement(12065..12979)
                     /gene="ldcA"
                     /locus_tag="JN078_002495"
     CDS             complement(12065..12979)
                     /gene="ldcA"
                     /locus_tag="JN078_002495"
                     /EC_number="3.4.17.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="muramoyltetrapeptide carboxypeptidase"
                     /protein_id="HAY9041662.1"
                     /translation="MSLFHLIAPSGYSIKQHAALRGIQRLTDAGHQVNNVEVIARRCE
                     RFAGTETERLEDLNSLARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLI
                     CGHSDFTAIQCGLLAQGNVITFSGPMLVANFGADELNAFTEHHFWLALRNKTFTIEWQ
                     GEGPTCQTEGTLWGGNLAMLISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYH
                     AGILPRQKAIILGSFSGSTPNDYDAGYNLESVSAFLRSRLSIPLITGLDFGHEQRTVT
                     LPLGAHAILNNTREGTQLTISGHPVLKM"
     gene            13079..13690
                     /gene="emtA"
                     /locus_tag="JN078_002496"
     CDS             13079..13690
                     /gene="emtA"
                     /locus_tag="JN078_002496"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309714.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     EmtA"
                     /protein_id="HAY9041663.1"
                     /translation="MKLRWFAFLIVLLAGCSSKHDYTNPPWNAKVPVQRAMQWMPISQ
                     KAGAAWGVDPQLITAIIAIESGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWSGEP
                     TTSELKNPERNISMGAAYLNILETGPLAGIEDPKVLQYALVVSYANGAGALLRTFSSD
                     RKKAISKINDLDADEFLDHVARNHPAPQAPRYIYKLEQALDAM"
     gene            complement(13692..14426)
                     /locus_tag="JN078_002497"
                     /pseudo
     CDS             complement(13692..14426)
                     /locus_tag="JN078_002497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415712.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar brake protein"
     gene            14627..14881
                     /locus_tag="JN078_002498"
     CDS             14627..14881
                     /locus_tag="JN078_002498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HAY9041664.1"
                     /translation="MGIIAWIIFGLIAGIIAKLIMPGRDGGGFFQTCILGIVGAVVGG
                     WLATMFGIGGSISGFNLHSFLVAVVGAILVLGLFRLLRRE"
     gene            15060..15500
                     /locus_tag="JN078_002499"
     CDS             15060..15500
                     /locus_tag="JN078_002499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041665.1"
                     /translation="MIQKINILDSSQSGVKNGADSEAVLAALIEHLELINPSGRLSQN
                     TRSAMLQLREEEWSEFFFWLLNSLECLDYVIINLTPESKKTLMSEHRNNIQVAIDALY
                     RQRRCKSPGDDSETLTRRNDAIFGNHVWQTFAQYFPPGLEKPAV"
     gene            complement(15579..16924)
                     /gene="treA"
                     /locus_tag="JN078_002500"
                     /pseudo
     CDS             complement(15579..16924)
                     /gene="treA"
                     /locus_tag="JN078_002500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001420363.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-trehalase TreA"
BASE COUNT         4311 a         4223 c         4421 g         4149 t
ORIGIN      
        1 aaatagcaaa atatacgctg cgagcaattg cgtcgcaaca ccacaccatt catacactgt
       61 ttgggttgct tcaaaatact tatcctggct atccataagt aaggttttaa tatcgccgac
      121 taaaacggag gctgcctgtg aatactcctg tttaaagcga cttaactctt ttatggtttc
      181 atcaaaggtc tgccagggga tgacctgatc gagatattta ttataaagat ctaatgctcc
      241 atctgcggtt tcgattgcgt ttttaactac ttctaccatt ttatctgcaa cgatttcagt
      301 cataatcatt cgcctcttta aatatataaa ttgtaatgaa actcctgttt tacaactatt
      361 aataaatttt acttcatcta attcatagtt agccgggtgg gatgcgtcaa tgtctttatt
      421 tctattaata tgataaatat caaacaatgt ttaatgtcat tatggcgaat gcttctattc
      481 tatttttttg ccgggtgata tttttcattt ctgctggatg agcgtcgtcg ccagaaggcc
      541 acgtgagcac aggataagag aacgaaaaat cagcagtcta tacagcgaca aatattgata
      601 gcctgaatca gtattgatct gctggcaaga atagactact gtatataaaa acagtataac
      661 ttcaggcaga ttattatgtt gtttatcaag cctgcggatc tccgcgaaat tgtgactttt
      721 ccgctattta gcgatcttgt tcagtgtggc tttccttcac cggcagcaga ttacgtcgaa
      781 cagcgcatcg atctgaatca actgttgatc cagcatccca gcgcgactta cttcgtcaaa
      841 gcaagtggtg attctatgat tgatggtgga attagtgacg gtgatttact gattgtcgat
      901 agcgctatta ccgccagcca tggtgatatt gtcatcgctg ctgttgacgg cgagtttacg
      961 gtgaaaaaat tgcaactacg cccgacggta cagcttattc ccatgaacag tgcgtactcg
     1021 cccattacca tcagtagcga agatacgctg gatgtctttg gtgtggtgat ccacgtcgtt
     1081 aaggcgatgc gctgatgttt gctctctgtg atgtaaacgc gttttatgcc agctgtgaga
     1141 cggtgtttcg ccctgattta tggggtaaac cggtggttgt actatcgaat aatgacggtt
     1201 gcgttatcgc ccgaaacgct gaggcaaagg cgctgggtgt taaaatgggc gatccctggt
     1261 tcaaacaaaa agatctgttt cgtcgctgtg gtgtggtttg ctttagcagc aattatgagc
     1321 tttacgcaga catgagcaat cgggttatgt cgacgctgga agaactatcg ccccgcgtcg
     1381 agatttacag tattgatgag gcattctgcg atctgacagg tgtgcgtaat tgtcgcgatc
     1441 tgactgattt tggcagagaa attcgcgcaa cggtgctaca acgtacccat cttactgttg
     1501 gtgtggggat cgcccagacc aaaacgctgg ctaagcttgc caatcatgcg gcaaaaaaat
     1561 ggcagcggca gacggggggg tggtggattt atcaaatctg gaacgccagc gtaaattaat
     1621 gtctgctctc cccgtggatg acgtctgggg gattggacgg cggatcagca aaaaactgga
     1681 cgcgatgggg atcaaaaccg ttcttgattt ggcggataca gatatccggt ttatccgtaa
     1741 acattttaat gtcgtgctcg aaagaacggt gcgtgaactg cgcggtgaac cctgtttgca
     1801 actggaagaa tttgcaccga caaagcagga aattatctgt tcccgctcgt ttggtgaacg
     1861 tatcacggat tatacgtcga tgcggcaggc catttgtagt tacgctgccc gggcggcgga
     1921 aaaacttcgc agtgagcatc aatattgtcg gtttatctcc acatttatta agacgtcacc
     1981 atttgcgctc aatgaacctt attacggcaa tagcgcgtcg gtaaaactgc tgacgcccac
     2041 tcaggacagc agggatatca ttaacgccgc tacgcgatct ctggatgcca tctggcaagc
     2101 gggccatcgc taccaaaaag cgggcgtgat gctgggggat ttcttcagtc agggagtcgc
     2161 gcagctcaat ttattcgatg acaacgcacc gcgccccggg agtgagcaat tgatgacggt
     2221 aatggataca ctgaatgcta aagagggcag aggaacactc tattttgccg ggcaggggat
     2281 ccaacaacaa tggcagatga agcgagccat gctttcacca cgttatacaa cgcgaagttc
     2341 tgatttactg cgggtcaaat aaatatagcg gcaggaaaaa agtgctcccg caggagcgcc
     2401 gaatggatta gcgaccgaac agatcacgtt ttttcgcttt aaacggctgg gaaatcatca
     2461 ccagcaccgc gacaatcagg taagcgataa aaataccgag cagccactgc ggcatttcca
     2521 gacctaaaaa atcccactga cgctcggcgc aatcgccaga ggcgacaaac acttgcggca
     2581 cccatttatc cagcggcagc cattccggga aacgaaccat aaaatcacag gtggcaaacg
     2641 gcgaaggata gagctgaagc atggtgtgct cgtaagttaa ctgcacaccg cggaacgcac
     2701 tatacaacca gataaccatc gctacataac gcagcggagt tttcggggcg atcgcgccaa
     2761 tcagcgcagc acccagaacg ccgaataacg cgcagcgttc ataaatacag agcacgcaag
     2821 gtttcagtaa catcacatgc tggaaccaca gcgccgtcag ttccagtgcc agagcagtaa
     2881 acgccatcaa cagccacgcg ccccggcctt gtgaacattg gttcaaaaat cgcaacataa
     2941 tcatttccct gcaatatgca tagagtgcgc agtttaaacc aattcattcg ctgcgccacc
     3001 aggaggcagc aaaaatagga cgcaattgga caattatcgg gcgaaaaggc aaaccgggca
     3061 tttatatgcc cggtaagttg ttatcaaagc gttgctatcc agcccatttg cataaaccat
     3121 tcggttacag gggcaagcgt aaactcgacg cagagcagcc cgacgagtgt caggacgagg
     3181 gtgtaaggca gggccatcca caccatgcgg ccataagaga ggcgaatcaa tggcgcgagt
     3241 gcagaggtca gcaggaacag gaacgcagcc tgaccgttcg gcgtagcgac agagggcaga
     3301 ttggtaccgg tattaatggc gaccgccagc agctcgtatt gcttcaacgt gatagcgcca
     3361 ctttccattg ccgctttcgc ttcgttgata taaatcgtcc ccacgaagac gttatccgaa
     3421 atggatgaca gcagaccgtt gaaaatatag aacaacgaca gctgagcatg ttccgatgcc
     3481 tgcaacacaa actgaataat cggcgaaaac agttgttggt cgataatcac cgcgactacc
     3541 gagaaaaaca ccgtcaacag tgcggtgaat ggcagagatt cggtgaaggc tttaccgata
     3601 gcatgttcat cggtgacacc ggtcaatgat gtcgccagaa taatgaccga caaaccaatc
     3661 aagccaacct ccgccagatg caacgccagc gcagtcacca gccagacgcc gataatcgcc
     3721 tggacaatca gacggatttt atcctgacgg gtacgctggt ggcggctttg atcgtcaaac
     3781 tgttgcaaca cttcgcggac tttctccggc agcgtttcac cgtagccaaa ccaacgcagc
     3841 ttctctacca gcaggcaggt taacaggcca caaatcagaa ccggaacggt caccggcgac
     3901 atgcgcagga agaaatcgcc aaaatgccag ccagccgctt tagcgatgat caggttctgt
     3961 ggttcgccca ccatggtcat tacgccgcct aatgcggtgc cgacaccggc atgcatcatc
     4021 aggctacgca gaaagccacg gaactgttcc agaaccactt tgtaatgctt gtcgatatga
     4081 ctatcgtctt gcaggtcggt atcttcagta cgggaagagg ctacgcggtg ataaatacca
     4141 taaaaaccga ctgcaacgct gatcaccacc gccacgacgg ttaaggcatc gaggaacgcg
     4201 gagaggaacg ccgccgccac gcaaaaagag agcgacagca gcattttgga acgaatgctt
     4261 aacagcaaac gggtaaatat gaacagcaat agctgtttca taaaatagat acccgccacc
     4321 ataaacatca gtaacagcaa gacttcaaga tttgccgcca cctcttcacg gacgtgttcc
     4381 gcgctggtca tgccgatgaa taccgcttca atagccaaca gaccaccggg gagtagcggg
     4441 tagcatttca gggccatcgc cagagtgaaa ataaattccg ctaccagcaa ccagccagcg
     4501 acgaaagggc tgatgaggaa aattaacgga tttacgatta agaaaatgat gagggcgagt
     4561 ttgtaccagt cgggggactg gcccaaaaaa ttgcgccata gcgcgcggcc ccaggagatc
     4621 tccatgatgg tttcccttac cttacaaata atcaatgatg tttttatgtt taaacgcaaa
     4681 gcttaacggt caggcaggag tgaggcaagt cttgatagtc aaggggaaag agatgcggaa
     4741 aatgaagcct tgatcccttt tttcttcttt ttgtctgcta tcagcgtagt tagccctctg
     4801 gtatgatgag tccaactttg ttttgctgtg ttatggaaat ctcactatgg tcattaaggc
     4861 gcaaagcccg gcgggtttcg cggaagagta cattattgaa agtatctgga ataaccgctt
     4921 ccctcccggg actattttgc ccgcagaacg tgaactttca gaattaattg gcgtaacgcg
     4981 tactacgtta cgtgaagtgt tacagcgtct ggcacgagat ggctggttga ccattcaaca
     5041 tggcaagccg acgaaggtga ataatttctg ggaaacctct ggtttaaata tccttgaaac
     5101 actggcgcga ctggatcacg aaagtgtgcc gcagcttatt gataatttgc tgtcggtgcg
     5161 taccaatatt tccactattt ttattcgcac cgcgtttcgt cagcatcccg ataaagcgca
     5221 ggaagtgctg gctaccgcta atgaagtggc cgatcacgcc gatgcctttg ccgagctgga
     5281 ttacaacata ttccgcggcc tggcgtttgc ttccggcaac ccgatttacg gtctgatcct
     5341 taacgggatg aaagggctgt atacgcgcat tggtcgtcac tatttcgcca atccggaagc
     5401 gcgcagtctg gcgctgggct tctaccacaa actgtcggcg ttgtgcagtg aaggcgcgca
     5461 cgatcaggtg tacgaaacag tgcgtcgcta tgggcatgag agtggcgaga tttggcaccg
     5521 gatgcagaaa aatctgccgg gtgatttagc cattcagggg cgataatccc ttccgtttaa
     5581 aaagcaaacc cctcaaacga ggggtttttt gttgttttta cagatttccc attcttggcg
     5641 ggcaacgttc cagcaactcg acgctgccat cttcgttttg ctgttccagc atcacatcaa
     5701 atccccacag gcgatgcaca tgcttcagca cttctttgcg cccccgatcc agcggtgcgc
     5761 gattatgtgg aatgtaacgc agcgtcagcg aacggtcgcc gcgcaaatcc acgttccaga
     5821 tctgaatatt cggctccaga ttacttaagt tatattgcga cgataaccgg ttacggatct
     5881 cccgataacc ttcttcatta tgaatagcgg aaatctccag ataattatgc cgatcgtcat
     5941 ccagcacggt gaagaagcgg aaatcacgca tcactttcgg tgacagaaac tggctgataa
     6001 aactctcatc tttgaaatca cgcatcgcga aatgcagcgt ttccagccag tcggaaccgg
     6061 cgatatccgg gaaccagtat ttgtcttctt ccgttggcga ctgacaaatc cgtttaatat
     6121 cctggaacat ggcgaacccg agggcatacg ggttgatgcc gctgtaccac gggctgttat
     6181 aggggggctg gaagaccaca ttggtgtggc tgtgcaaaaa ctccagcata aaacgttccg
     6241 ttactttccc ttcatcatac agatggttaa ggatggtgta gtgccagaag gtggcccagc
     6301 cttcgttcat cacctgagtc tgtttttgcg gataaaaata ctggctcacc ttacgcacaa
     6361 tacgcaggat ttcacgctgc catgattcca gcagtggcgc atttttctcc ataaaataga
     6421 gcaggttttc ttgtggttcg gacggatagc ggcgcgcttc agcaaccgtt ttctcttcct
     6481 cgcgcttcgg cagggtacgc cagagcatat tgacctgact ttgtagatac tcttcgcgac
     6541 ttttctgccg ggctttctct tcttgcagcg agattttttg cgggcgtttg taccggtcca
     6601 cgccgtagtt catcagcgcg tggcacgagt ccagaagccg ttctacttca tccacgccat
     6661 aacgttcttc gcactcggta atatatttac gggcaaaaat cagataatcg acaatcgaac
     6721 tggcgtcggt tcaactgcgg aataagtaat tgtttttaaa gaaagagtta tgcccatagc
     6781 aggcgtgtgc catcaccagc gcttgcatgg taatggtgtt ctcttccatc aggtaagcga
     6841 tacacgggtt agagttaatg acgatttcat aggccagtcc ttgctgaccg tgcttataca
     6901 gccgttcagt ctcgataaac tttttaccga atgaccagtg cggatagtta attggcatgc
     6961 cgacgctgga gtaggcatcc atcatctgtt ctgaggttat cacttcaatc tggtgcgggt
     7021 aggtatccag ccggtagagt ttcgccaccc ggtctatctc tgccagataa acatccagca
     7081 ggtcgaacgt ccagtcgggt ccatcgctca accgtgtggt gtccttattc atagaatcga
     7141 tcgtcgccat acgcgcacct cattgttgtc ggcgctctct gtgtggagca cctcatttca
     7201 agcatagaac acctgttaaa aaccgcgtcg ccggagaatt tttttctttg cgatttctta
     7261 ttatcagagt gccactaatc cgcttctgaa cggaatttta tgctggataa aaagggcgtt
     7321 cagcaggaga tactaaagac gccatattgc cgcagagtca gggagatgtg agccagctca
     7381 ccataaaaaa gctgtatgtt gaataatatt ttcaactgag ttatcaagat gtaattagat
     7441 tattattctt ttactgtatc taccgttatc ggagtggcta tgcgagttgt catactggga
     7501 agtggtgtgg taggcgttgc cagcgcctgg tacttaaatc aggcaggaca tgaggtcacc
     7561 gtcattgatc gggagccggg ggccgccctg gaaaccagcg ccgcgaatgc cgggcaaatc
     7621 tcccccggat atgctgcacc gtgggcggca ccaggtgtgc ctttaaaagc gatcaaatgg
     7681 atgttccagc gccatgcgcc gctggcggtt cgtctcgacg gtacgcagtt tcagttgaaa
     7741 tggatgtggc aaatgttacg taactgcgac accagccact acatggaaaa caaagggcgg
     7801 atggtgcgtc tggcggaata cagccgtgat tgcctgaaag cattgcgcgc cgaaaccaat
     7861 attcagtatg aagggcgtca gggtgggacg ctgcaactgt tccgtaccga acaacagtat
     7921 gaaaatgcga cccgcgatat cgccgtgctg gaagatgccg gcgtaccgta tcagctgctg
     7981 gaatccagcc gcctggcgga agtggagcca gcgctggcag aagtagcgca caaactgacg
     8041 ggtggtctgc aactgcccaa tgatgaaacc ggagactgcc agctgtttac ccagaatctg
     8101 gcgcggatgg cagagcaggc gggggttaaa ttccgcttta atacgcccgt tgaccaactg
     8161 ctttgcgacg gcgagcaaat ctacggcgtg aagtgtggcg atgaagtgat taaggccgat
     8221 gcgtatgtga tggcgtttga ttcttactcg acggcgatgc tcaaaggcat tgttgatatt
     8281 ccggtgtatc cgctgaaagg ctactcgctg actattccaa ttgcgcagga agatggtgcg
     8341 ccagtatcca ccattcttga tgaaacctac aaaatcgcca ttacccgttt cgataaccgc
     8401 attcgtgttg gcggaatggc ggaaattgtt ggttttaaca ccgagctgtt gcaaccgcgt
     8461 cgtgaaacgc tggaaatggt ggttcgcgat ctctatccac gcggcggtca tgtcgagcag
     8521 gcgactttct ggacgggttt gcgcccgatg acgccagacg gtacgccggt tgtcgggcgt
     8581 acacgcttta aaaatctgtg gctgaatacc ggtcacggca cgctcggctg gacgatggct
     8641 tgcggttccg gtcagttgtt aagcgatctg ctctctggtc gcacgccagc gatcccatat
     8701 gaggatctaa gcgtagcgcg ctacagccgt ggatttacgc catcacgtcc gggccattta
     8761 catggcgcac acagctaagg aaacgagatg acccgtccga tacaggccag cctcgatctg
     8821 caggcattaa aacagaatct gtccattgtc cgccaggccg cgccgcacgc gggtggtaaa
     8881 agcgaacgct tacgggcatg gtattgagcg tatctggagc gcgctcgggg ccaccgatgg
     8941 ctttgcatta cttaacctgg aagaggcaat aacgttacgt gagcgcggct ggaaggggcc
     9001 gatcctgatg ctggaaggat ttttccatgc tcaggatctg gagatttatg accagcaccg
     9061 cctgaccacc tgcgtacaca gcaactggca gctcaaagca ctgcaaaatg cgcggctaaa
     9121 agcaccgttg gatatttatc ttaaagtgaa cagtgggatg aatcggttgg gcttccagcc
     9181 cgatcgcgtg cttaccgtct ggcagcagtt gcgggcaatg gcgaatgttg gcgagatgac
     9241 cctgatgtcg cattttgccg aagcggaaca tcctgatgga atttccagcg cgatggcgcg
     9301 tattgagcag gcggcggaag ggctggagtg tcggcgttcg ttgtccaatt cggcggcgac
     9361 tctgtggcac ccggaagcgc attttgactg ggttcggcct ggcattattt tgtatggcgc
     9421 ttcgccgtcc ggtcagtggc gtgatatcgc caataccgga ttacgtccgg tgatgacgct
     9481 aagcagtgag attattggtg tccagacgct aaaagcgggt gagcgtgtgg gctacggcgg
     9541 tcgctatact gcgcgcgatg aacagcgaat cggcattgtc gccgcagggt acgccgacgg
     9601 ttatccgcgc cacgcgccta ccggtacccc tgttttagtg gacggcgtgc gcaccatgac
     9661 ggtggggacc gtctcgatgg atatgctggc ggtcgattta acgccttgcc cgcaggcggg
     9721 tattggtacg ccggttgagc tgtggggcaa ggagatcaaa attgatgatg tcgccgccgc
     9781 tgccggaacg gtgggctatg agttgatgtg cgcgctggcg ctacgcgtcc cggttgtgac
     9841 ggtgtaactt gttgtaagcc ggatcggagg caacgtcttc tgggtgcaaa aaaaatcatc
     9901 catccggctg gtcagcaact gtagttgtta atgtgacaga gccattgccc atgatagtgt
     9961 ccattaaaag gatggacact atttccccgg aacctgaact caccgcacag gcgttctaca
    10021 taaaacgctt acgcttcatt gttgactcgg agtcgacttc agataaatca cgctttaccc
    10081 ttgatggagc ctgtacatag atttgtgtaa ttgcctgatt ttgatatgtt caattcaaca
    10141 tcaaatgaag gttaaattat ggacgacaaa caattgcagg ctcaggctgc gttcagcaaa
    10201 gcatcgcaac cggcgataga tgcttcatta aatttaagat tcagcttcct cttcagccac
    10261 ccgtacgcca atcttcaaca cttcattatc ttctttctcg gccaccgtcc agatcatccc
    10321 ggcaaactct acctggtcac cgacaaccgg tgccgtgcct aacaactgct ggacaatttc
    10381 acccagcgtt tgctgcttat cacgatattc tcgcccgtct tccaggccat atatcagcgc
    10441 aacatcagca tatttggcgc tggcttcgag aatgaagtca ccaaagaagc gttgatccag
    10501 cgcgaccggc ggcgactggc tgaacagttt accgagcgcc ggaagatcgc gttcccgacc
    10561 aattacacac aacacatcgc cttcgcgcag tcgggtgctg ccggtaggat gaagcaactg
    10621 gttatcacga aacagtgccg caatacgcgt ctcttttggc atatgcaaat cgcgcagtgc
    10681 cgcgcccacg caccatttat cggcactcaa ttgataaaca aactgctccc acggattttc
    10741 cggatgaata tccaggccaa cgcgtgacac cggacgtccc actggcggaa ccaccacttt
    10801 ggctttttta gccgcccacg agagtgatgt tccctgcaag agcagtgaaa ccagaaccac
    10861 aaagaaggcg acattaaaga acagacgtgc attctccagc cccgccatca tcgggaacac
    10921 ggccaggatg attggcaccg cgccgcgtaa tcctacccag ctgataaaca cgcgctcacg
    10981 cagattgaaa ccgcggaagg ggagcaatcc agcaaatacc gaaaggggac gggcgaagaa
    11041 tatcatccat gccgacaaaa ttagcgccgg aatggcaata ggcagcagat cgcttgggtt
    11101 aaccaatagc cccagcacca ggaacatggc gatttgcgcc agccaggcga ggccgtcgaa
    11161 attttgcagg atgccgtagc ggttgcgaat cggccgatta cccagcagaa aaccgcacag
    11221 ataaacagcc agaataccgc tgccttccag cgccgtggtt aaagcaaaaa ttaaaatacc
    11281 gccgcttaat gccagcaatg gatataatcc ggcaggcagg gcgatgcgat taatcatttg
    11341 cagcagtaaa taaccaccgc caagtccgat gacaatcccg aggccaaatt gctgcagaat
    11401 atcgaccacg aacatccaac tgacactgct ttcatgttgc tggatcatcg caatcagggt
    11461 aatcgtcaga aagaccgcca ttggatcatt actgccggat tcaatttcca gcgtcgagcc
    11521 aacacgttcg ttaagcccct taccacccag cagagaaaag accgctgcag catcggtaga
    11581 gccgacgata gcgccgatta ataagccttc aatcaaatca agattaaaca gccacgccgc
    11641 catcatgccg gttaaaccag aggtgataag cacgcccagc gtcgccagcg acagtgccgg
    11701 tcctaacgcc acacgaaagg aactggcctg agtgcgcatc ccgccgtcga gcaaaataat
    11761 cgccagtgcc aggttactta ccatgtaggc gaaggggtaa ttatcaaacg ggataccgcc
    11821 gacgccatcg actcctgcca gcatgccgat cgccagaaaa ataaccagaa taggaatgcc
    11881 aagacgggaa gaaaatgaac taagtaatat actgctggtg acaaggatgg atcctaagat
    11941 gaaaaggcta attattgttg tggcatccaa cggtcggtta ctcctgatta cgctgtctct
    12001 tatataaacc ctaccatatt agcggcagag acagcgtttt acttagccct gaagcgtgat
    12061 ttttttacat tttaagaaca ggatgaccgc taatcgtcaa ctgagtgcct tcccgggtgt
    12121 tattcagaat ggcatgtgcg cccaacggca gcgtaaccgt gcgttgttca tgaccaaaat
    12181 cgaggccggt aatgagtgga atcgacaggc gggaacgcaa aaacgcggac actgactcca
    12241 ggttgtaacc tgcgtcataa tcattgggcg tgctgccgct aaagctaccg agaataatcg
    12301 ccttctgacg tggcaaaatt cccgcatgat agagctgcaa cagcatacgt tcgacgcgga
    12361 aagggtgctc gttaatatct tccagtacca ggataccgtt ctcaattttt ggcatccacg
    12421 gtgtaccaat cagtgaaatc agcatcgcaa gattgcctcc ccacaacgtg ccttcggtct
    12481 gacatgtcgg gccttcccct tgccattcaa tggtgaaggt tttattgcgt aacgccagcc
    12541 agaaatggtg ctcggtaaag gcgttcagtt catccgcacc aaagtttgct accagcatgg
    12601 ggccgctaaa ggtgatgaca ttgccttgcg ccagaagacc gcactgaatg gcggtaaaat
    12661 cgctatgtcc gcaaatgagt aacgggtcat gttgttggcg agccaccagt gcctgccagt
    12721 caatatctgc cagtaaacga ctggcaccgt aaccgccgcg tacagccagc acgatggtgt
    12781 tgggtgtagt cagtctggca agggaattga gatcttccag acgctccgtt tccgtacccg
    12841 caaaacgctc acaacgacgg gcaataacct cgacgttatt gacttgatgc cccgcgtcgg
    12901 taaggcgctg gataccacgc agcgcggcgt gctgtttaat gctgtaaccc gatggggcaa
    12961 ttaagtgaaa cagagacatg gcaattcctt gctgacaaca gaaacgaaat gtatatcatg
    13021 ccgcttaggt gtgccgttgt cacctcaacg gcgattccag gctataagga tagaagaagt
    13081 gaaattgaga tggtttgcct ttttgattgt gttattagcg ggttgttcat caaagcatga
    13141 ctatacgaac ccgccgtgga acgcgaaagt tccggtgcaa cgtgcgatgc agtggatgcc
    13201 aataagccag aaagccggtg cagcctgggg cgtcgatcca caattgatca cggcgattat
    13261 cgctatcgaa tcgggtggta atccgaacgc ggtgagtaaa tcgaatgcca ttggtttgat
    13321 gcagttaaaa gcttcaacct ccggacgtga tgtttatcgc cgtatgggct ggagtggtga
    13381 gccgacgacc agcgagctga aaaatccaga gcgtaatatt tcaatggggg cggcttacct
    13441 gaatattctg gaaaccggcc cgctggcagg cattgaagat ccgaaggtac tgcaatatgc
    13501 gctggtggtg tcatacgcta acggggcagg tgcgctgcta cggactttct cgtcagatcg
    13561 gaaaaaggcg atcagcaaaa tcaacgattt ggatgctgac gagttcctcg atcacgtagc
    13621 gcgcaatcat cctgcgccgc aggctccgcg ctatatctac aaacttgagc aggcactgga
    13681 cgcgatgtaa atcagtcgcg tactttgtcc gctttctccc gggcttcccg ctcgagagag
    13741 aaaataatcc gttgtaattg ccgctccacc gtcgggctga cgttaagaaa acggaagctc
    13801 agacggggag tggtgatggt ttcattcttg ccatcaatca ctttgcgctc gctgatggag
    13861 attaactggg cgtcaaagtg aaaaacaccc cattgcccca tgttgacttc aatctgagcg
    13921 aagcgcatgc cttcttgtaa ttcggcaggc tttgctgttt ccagtaatgc gcccatgccg
    13981 cctaacgaca aatcatacag gcggaaacgt aacgtactgt tatccgccag tttggtctgg
    14041 caaaaataag gcggatggag tggggcggag atgcggaaat atcggcgtcg ttgtacaaac
    14101 cataaggtgg gaggcggtac ggtaataaat gccggaagct gcaagtattc actctactgt
    14161 agttgttcaa cagtaaactc gactttcgca ccctgagttt cggcggtaat ggtaatatgc
    14221 tgcgccttta gcacggcgat gttgtcttcg gcttgactgc cgaaatccag caccagttta
    14281 tccggggtta ttgccagtat tttgctgatc agctgcccgc cattccaact gagacgcaaa
    14341 ggaattgcgg ctttgtgcaa atcgcgtaac acgcccagga cggctaacgg attttgtttc
    14401 aggaactgct catggtaatg actcacgcgg aaaaactcct gactgacaaa ctgtctttgg
    14461 tttatcggtc acagttaaca aaacttaata caaatgcgtg aatatttttt acatgttgtt
    14521 cttaaatcag ccgacatacg cccagcatcg atcccgccct tgcctatact tagagcgttg
    14581 acgtaagcat ttcttgcgtc cgattcatcg aaacgagggc ttgaacatgg gaattattgc
    14641 ctggattatt tttggcctga tagccggcat tatcgccaag ctaatcatgc cggggcgtga
    14701 tggtggtgga tttttccaga cctgtattct cgggatagtc ggtgcggtgg tcggcggctg
    14761 gctggcgacc atgtttggca ttggcggctc catcagcggt tttaatttgc acagcttcct
    14821 ggtggcggtg gtgggagcta ttctcgttct gggcttattc cgcctgctgc gaagagaata
    14881 agattttcat aaggcggata gcgatacaga tgccgctatc cgcttttcac atcagaacgt
    14941 atattcgaca cctgctttac gggtgaaaaa aatcaatata gcacttcgat atccgataaa
    15001 gtcggttccc ggtaacaaca acagaatcct tttttaatta ttgtttcgtt gtttttggtg
    15061 tgattcagaa aataaatatt ttagacagta gccagtcagg cgttaaaaat ggggcggata
    15121 gtgaggcggt tttggctgcg cttattgaac atttagaatt gatcaatcct tctggcagat
    15181 taagccaaaa tacccgttcg gcaatgcttc agttacgcga agaggaatgg tctgaattct
    15241 ttttttggtt gctaaattct ctggagtgtc tggattatgt gattattaat ttaactccag
    15301 aaagcaaaaa aacgttgatg agtgaacacc gtaacaatat tcaggtagca atcgatgctt
    15361 tatataggca acgtcggtgt aaatcaccgg gggatgatag tgaaacactt acccgtagaa
    15421 atgacgctat cttcggcaac cacgtatggc aaacatttgc gcaatacttc ccgccaggac
    15481 ttgaaaaacc ggctgtgtag aaaacaccat agctatggtg ttatctgccg acaacgccat
    15541 ccggagaagc cgaatgacgt tgtcggagta agcgctggtt aaggtgtggg ttgtgcctct
    15601 ttggttgagg gttgcgtcgt tgctgactta acggtcggac gcgtcgccgg aacattgtca
    15661 cacggttgct ctttcgggca gatcaaatcc agcattttca gcgtcacgcc attggtccag
    15721 ccaaagccat cctgtaatgg atattcgcca cctctttttg cccgtagttt tgtaatcctt
    15781 ctgtcgcgac ccactgtaac ggtgcccagc catttggcgc atcccattgt tgcccacttt
    15841 tcaccgacgt ggtgttcagg ccgccgggtt gcagcagatg tgttttcgtc gccgtcgcca
    15901 ttttgttggc gcgatctttc gctgccgcat tgacgtacag cgggaacagg gcggccgcgg
    15961 ttaactgatt gcgcacttta tgacttttca ggtcgtaatc ggcataccag ccttgttgat
    16021 cgttccacag gtatttttcg attccttttt gacgggcatt cgccagcgtt tcgtactggt
    16081 ttgccatcgc gttatctcct gcagctttgc tggcgcgggc gaggattttt tccattttaa
    16141 acatcaggct gttcagatcg accggtacga tgctggtggt gcgtaaggta tttaactgct
    16201 gcgggttgtc catccagcgc gagctgaaat cccagccaga cgcagcggca gagcgcaggt
    16261 cgcggtaaat ttcagtggca ggtcgattcg gattgctttt ggcggtggca atatcttcca
    16321 cccatgactc tggtcgtggc gtatcgcgat cgtcccagta gcggttgaga agggtaccat
    16381 cctgaagttt gacaacgcgt ttttcctgtt gtccggcttg caggttttca acaccgtcca
    16441 tccagtaagc atattctttt tgcatttgcg gcaggtattg cttcaacgcg gcatcgcctt
    16501 catgctgcgc cagtaactct accatcaggg caaagaaggg cggttgcgag cggcttaaat
    16561 agtaactgcg gttgccgttg ggaatatgac cgtaagtgtc tatttcatga gcaaaattgg
    16621 ccaccatatc cgcgacttta tcccagtgac cgctttcggc aagtcctaac atggtgaagt
    16681 aactgtccca gtaatatacc tcgcgaaaac gtccgcccgg cacgacataa ggttccggca
    16741 gcggtaacag agaatcccat ttttcggtgt tttcggtaga acgcgttaat accggccaaa
    16801 gtccgtcaat atgttcgcgc agtgactgcc cctctggcgg aacatatttc tcgccttctt
    16861 tcggcagggt gaaattgacg ttaacgaaat ggcgcagatc aaatccgctc tggttttgct
    16921 gcatccgata atcagcggat cgctgttcgg cacggcatcg gcaaaggttt tttggtccgg
    16981 aaaaagtttg gcgttttgca catcattaaa cagcggccct aataaaatat caggcggctg
    17041 tggtgttacc ggtgtttctt ctgcctgcac cgatagcgca gcgaaacaca aaaagataca
    17101 ggct
//
LOCUS       DADMJB010000088        16807 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.088, whole genome shotgun sequence.
ACCESSION   DADMJB010000088 DADMJB010000000
VERSION     DADMJB010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16807)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16807)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16807
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.088"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..268)
                     /locus_tag="JN078_002501"
     CDS             complement(<1..268)
                     /locus_tag="JN078_002501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
                     /protein_id="HAY9041666.1"
                     /translation="MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRF
                     AGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAKKEEK"
     gene            complement(568..662)
                     /locus_tag="JN078_002502"
     tRNA            complement(568..662)
                     /locus_tag="JN078_002502"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(626..628),aa:Sec,seq:tca)
     gene            955..2337
                     /locus_tag="JN078_002503"
     CDS             955..2337
                     /locus_tag="JN078_002503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418114.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside-pentoside-hexuronide family
                     transporter"
                     /protein_id="HAY9041667.1"
                     /translation="MKSEVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPA
                     GFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPD
                     LSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM
                     LSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTTTSMR
                     EDLRDIWQNDQWRIVGLLTIFNILAVCVLGGAMMYYVTWILGTPEVFVAFLTTYCVGN
                     LIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQL
                     VTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYDA
                     AEKAQNSATISIIIALFTIVPAICYLLSAIIAKRYYSLTTHNLKTVMEQLAQGKRRCQ
                     QQFTSQEVQN"
     gene            2347..4638
                     /gene="yicI"
                     /locus_tag="JN078_002504"
     CDS             2347..4638
                     /gene="yicI"
                     /locus_tag="JN078_002504"
                     /EC_number="3.2.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-xylosidase"
                     /protein_id="HAY9041668.1"
                     /translation="MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRER
                     TWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAE
                     FKSGNLSARVSKGEFWSLDFLRNGERITGQDTNNQRNYMFERLDLGVGETVYGLGERF
                     TALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQSVSFEVGSEKVSK
                     VQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEAT
                     VNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKIC
                     VWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADK
                     LKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAHIYNELVWNVLKDTVGEE
                     EAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHYIGGFEN
                     TAPAHVYKCWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYR
                     EAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEG
                     RWTHLWHNDELDGRCWHKQQHSFLSLPIYVRDNTLLALGNNDQRPDYAWHEGTAFHLF
                     NLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQD
                     GSQAESEQGLVVKPQGNALTITL"
     gene            complement(4691..6400)
                     /locus_tag="JN078_002505"
     CDS             complement(4691..6400)
                     /locus_tag="JN078_002505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HAY9041669.1"
                     /translation="MKFIGKLLLYILIALLVVIAGLYFLLQTRWGAEHISAWVSENSD
                     YHLAFGAMDHRFSAPSHIVLENVTFGRDGQPATLVAKSVDIALSSRQLTEPRHVDTIL
                     LENGTLNLTDQTAPLPFKADRLQLRDMAFNSPNSEWKLSAQRVNGGVVPWSPKAGKVL
                     GTKAQIQFSAGSLSLNDVPATNVLIEGSIDNDRVTLTNLGADIARGTLTGNAQRNADG
                     SWQVENLRMADIRLQSEKSLTDFFAPLRSVPSLQIGRLEVIDAHLQGPDWAVTDLDLS
                     LRNMTFSKDDWQTQEGKLLMNASEFIYGSLHLFDPIINAEFSPQGVALRQFTSRWEGG
                     MVRTSGNWLRDGKTLILDDAAIAGLEYTLPKNWQQLWMETTPGWLNSLQLKRFSASRN
                     LIIDIDPDFPWQLTTLDGYGANLTLVTDHKWGVWSGSANLNAAAATFNRVDVRRPSLA
                     LTANSSTVNISELSAFTEKGILEATASVSQTPQRQTHISLNGRGVPVNILQQWGWPEL
                     PLTGDGNIQLTASGDIQANAPLKPTVSGQLHAVNAAKQQVTQTMNAGIVSSGEVTSAE
                     LVQ"
     gene            complement(6521..7912)
                     /gene="xanP"
                     /locus_tag="JN078_002506"
     CDS             complement(6521..7912)
                     /gene="xanP"
                     /locus_tag="JN078_002506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine/proton symporter XanP"
                     /protein_id="HAY9041670.1"
                     /translation="MSVSTLESENAQPVAQTQNSELIYRLEDRPPLPQTLFAACQHLL
                     AMFVAVITPALLICQALGLPAQDTQHIISMSLFASGVASIIQIKTWGPVGSGLLSIQG
                     TSFNFVAPLIMGGTALKTGGADVPTMMAALFGTLMLASCTEMVISRVLHLARRIITPL
                     VSGVVVMIIGLSLIQVGLTSIGGGYAAMSDNTFGAPKNLLLAGVVLALIILLNRQRNP
                     YLRVASLVIAMAAGYALAWFMGMLPESNEPMTQELIMVPTPLYYGLGIEWSLLLPLML
                     VFMITSLETIGDITSTSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCF
                     GQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPVLGGATLVMFGTIA
                     ASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPLILQFAPEWLKNLLSSGIAAGGIT
                     AIVLNLIFPPEKQ"
     gene            8192..9397
                     /gene="gltS"
                     /locus_tag="JN078_002507"
     CDS             8192..9397
                     /gene="gltS"
                     /locus_tag="JN078_002507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/glutamate symporter"
                     /protein_id="HAY9041671.1"
                     /translation="MFHLDTLATLVAATLTLLLGRKLVHSVSFLKKYTIPEPVAGGLL
                     VALALLVLKKSMGWEVNFDMSLRDPLMLAFFATIGLNANIASLRAGGRVVGIFLIVVV
                     GLLVMQNAIGIGMASLLGLDPLMGLLAGSITLSGGHGTGAAWSKLFIERYGFTNATEV
                     AMACATFGLVLGGLIGGPVARYLVKHSTTPNGIPDDQEVPTAFEKPDVGRMITSLVLI
                     ETIALIAICLTVGKIVAQLLAGTAFELPTFVCVLFVGVILSNGLSIMGFYRVFERAVS
                     VLGNVSLSLFLAMALMGLKLWELASLALPMLAILVVQTIFMALYAIFVTWRMMGKNYD
                     AAVLAAGHCGFGLGATPTAIANMQAITERFGPSHMAFLVVPMVGAFFIDIVNALVIKL
                     YLMLPIFAG"
     gene            complement(9431..11512)
                     /gene="recG"
                     /locus_tag="JN078_002508"
     CDS             complement(9431..11512)
                     /gene="recG"
                     /locus_tag="JN078_002508"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HAY9041672.1"
                     /translation="MTGRLLDAVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRY
                     EDRTHLYPIGELLPGVYATVEGEVLNCNISFGGRRMMTCQISDGSGILTMRFFNFSAA
                     MKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQ
                     ATLRKLTDQALDLLDTCAIEELLPPELSQGMMTLPEALRTLHRPPPTLQLSDLETGQH
                     PAQRRLILEELLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARV
                     VAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHA
                     NNFRNWFEPLGIEVGWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLA
                     LVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDE
                     LPPGRTPVTTVAIPDTRRTDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATW
                     EELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMI
                     IENPERLGLAQLHQLRGRVGRGAVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQ
                     KDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRLARHIHERYPQQAKALIER
                     WMPETERYSNA"
     gene            complement(11518..12207)
                     /gene="trmH"
                     /locus_tag="JN078_002509"
     CDS             complement(11518..12207)
                     /gene="trmH"
                     /locus_tag="JN078_002509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(18)-2'-O)-methyltransferase
                     TrmH"
                     /protein_id="HAY9041673.1"
                     /translation="MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVG
                     VHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNA
                     VDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE
                     AQRQRQNAGMYLRENSMLPEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEAD
                     ADWWATMQAAG"
     gene            complement(12214..14322)
                     /gene="spoT"
                     /locus_tag="JN078_002510"
     CDS             complement(12214..14322)
                     /gene="spoT"
                     /locus_tag="JN078_002510"
                     /EC_number="3.1.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional GTP
                     diphosphokinase/guanosine-3',5'-bis pyrophosphate
                     3'-pyrophosphohydrolase"
                     /protein_id="HAY9041674.1"
                     /translation="MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEP
                     YITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSK
                     LDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIAR
                     ETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILS
                     EIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSDTCYRV
                     LGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMG
                     VAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFT
                     PEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPG
                     ARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLNEIPQENI
                     QRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQHGDASIPPATQSHGHLPIKGADGV
                     LITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETAQE
                     FITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTEEKDGRVYSAFIRLTARDRVHLA
                     NIMRKIRVMPDVIKVTRNRN"
     gene            complement(14341..14616)
                     /gene="rpoZ"
                     /locus_tag="JN078_002511"
     CDS             complement(14341..14616)
                     /gene="rpoZ"
                     /locus_tag="JN078_002511"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013511051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HAY9041675.1"
                     /translation="MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEND
                     KTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR"
     gene            complement(14671..15294)
                     /gene="gmk"
                     /locus_tag="JN078_002512"
     CDS             complement(14671..15294)
                     /gene="gmk"
                     /locus_tag="JN078_002512"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HAY9041676.1"
                     /translation="MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP
                     RPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLD
                     IDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHY
                     DEYDYLIVNDDFDTALTDLKTIIRAERLRMSRQKQRHDALISKLLAD"
     gene            15552..>16807
                     /gene="ligB"
                     /locus_tag="JN078_002513"
     CDS             15552..>16807
                     /gene="ligB"
                     /locus_tag="JN078_002513"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418104.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigB"
                     /protein_id="HAY9041677.1"
                     /translation="MKVWMAILISILCWQSSVWAVCPAWSPARAQEEIFRQQQQIKQW
                     DDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPRDVMMPPLNGAVMHPVAHTGVRK
                     MADKNALSLWMRERSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSL
                     ISAVPQTVSGPLANSTLQGEIFLQREGHIQQQMGGINARAKVAGLMMRQDDSDTLNSL
                     GVFVWAWPDGPQLMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAELPFVT
                     DGVVVRAAKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLA
                     SVMLDDKKVQRVNIGSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTP
                     PENRFNSLTCYFASDVCQEQFISRLV"
BASE COUNT         3812 a         4287 c         4535 g         4173 t
ORIGIN      
        1 ttttttcttc cttttttgcc tcccctggat cgcctccagc agcgaggagt ttcctggctt
       61 cactgcgttt ctcgcgagca tcggctaacg ttacatcggg gtatacgcca atagaaagca
      121 tcttttcttt accagcaaag cggtacttca tgcgccagta tttagaacca ttagtgttaa
      181 tcagtagata cataccgccg ccatcagcaa gcttataggg tttgtctttg ggttttgcgg
      241 ttttcacttt gatatcggtt aatgccatga catcctccgg cttttgatga attcatcttc
      301 ctgaggggga tttctgccag taactaacct gataccccca atacacccct tgtataacaa
      361 agatattgtt aaaagccgtt gttatgtatc atatttttcc tattatgggg gtgcttgtat
      421 ttcaatagga aataacaccc cctaaagtac ccccaaaaga aacttgatat ggggtgaagt
      481 aggttgacct caggatacaa ataaatactg atatacaagg gattagaaga gatttattga
      541 cattgggaga gttcagaaga ggtaaactgg cggaagatca caggagtcga acctgtccgg
      601 gaccgctggc ggccccaact ggatttgaag tccagccgcc tcaccggaga cgacgatctt
      661 ccgcgcctcg attgctacat ggaggcgggg cgcattatag ctacttcctt gagtttctac
      721 atcccccaga tcagtttttt ccgcctaata cacgcagcgt attatcacga aagcattata
      781 gttcatataa aacccatatt ttacaatgac atatgagcgg aattaacgct accacgatca
      841 cataaaacaa gaatcataaa ttaataacca gatatcggaa tattcgctct cacagggatg
      901 gtttacaaaa tgcgttatcg gtctcagcac ccctatagca tcaaggaaaa gcagatgaag
      961 agtgaagtgt tgtccgttaa agagaaaatt ggttatggca tgggagacgc cgccagccac
     1021 attattttcg ataacgtaat gttatatatg atgttctttt ataccgatat ttttggcatt
     1081 cctgccggtt ttgtcggaac catgtttttg gtcgctcgtg cactggatgc gatttccgat
     1141 ccttgcatgg ggttgttggc cgatcgaacg cgctctcgct ggggtaaatt tcgtccgtgg
     1201 gtactgtttg gcgcactgcc attcgggatc gtctgtgtac tggcctatag cacgccagat
     1261 ctcagtatga acggcaaaat gatctatgca gcaattactt acaccctact taccttactt
     1321 tataccgtcg tcaatatccc ttactgcgca ttgggtggtg taatcaccaa tgacccgact
     1381 cagcgtatct cgctgcaatc ctggcgtttt gtgctggcga ccgcgggagg catgctttct
     1441 actgttctga tgatgccact ggttaattta attggcggtg ataataaacc actcggtttc
     1501 cagggcggta tcgcggtcct ttccgtggtg gcattcatga tgctggcatt ttgtttcttc
     1561 accactaaag aacgcgttga agcaccacct acaacaacgt ctatgcggga agatttacgt
     1621 gatatctggc aaaacgacca gtggcggatt gtcggtttac taaccatttt caatatcctg
     1681 gcggtgtgcg tactcggtgg ggcgatgatg tattacgtca catggatttt gggcacgccg
     1741 gaagtgtttg tcgcttttct caccacttat tgcgtgggta acctgattgg ttccgcactg
     1801 gcaaaacctc tgaccgactg gaaatgtaaa gtcactatct tctggtggac gaacgccctg
     1861 ctggcagtga ttagcctcgc gatgttcttt gttcccatgc aggccagcat cactatgttt
     1921 gtcttcatct tcgtgattgg tgtgttgcat caactggtga cacctatcca gtgggtaatg
     1981 atgtccgata ccgtcgacta cggcgagtgg tgcaatggta aacgcctgac cgggatcagt
     2041 tttgctggca cgctgtttgt gctcaaactg gggttggcct tcggcggcgc tcttatcggc
     2101 tggatgctgg cttatggcgg atatgatgcg gcagaaaaag cgcagaacag cgccacgatt
     2161 agcatcatta ttgcgctatt cacgattgtt ccggcgatct gttatttgct gagcgcgatt
     2221 atcgctaaac gctactactc actcacgacg cacaatctga aaaccgttat ggaacagctg
     2281 gctcagggta aacgccgttg ccagcaacaa ttcacctctc aagaagtgca gaactaagga
     2341 acggcaatga aaattagcga tggaaactgg ttgattcaac ctggcctcaa tttgattcac
     2401 ccgcttcagg tgttcgaggt tgaacagcag gataatgaaa tggtggtcta tgctgccccc
     2461 cgtgatgtgc gtgaacgtac ctggcagctt gatacgcctt tatttacgct gcgctttttc
     2521 tccccacagg aaggtattgt cggtgtgcgg attgagcatt ttcagggagc gctgaataac
     2581 ggtcctcatt atccgctcaa tattttgcag gacgtgaagg tcacaatcga aaacacagaa
     2641 cgttatgctg agtttaaaag tggcaactta agcgcgcgtg tcagcaaagg tgagttctgg
     2701 tcactcgatt ttctgcgcaa cggtgaacgt attaccggtc aggacacgaa taatcaacga
     2761 aattatatgt ttgagcggct tgatcttggc gttggcgaaa cagtttatgg tctgggagag
     2821 cgttttactg ccctggtgcg caatggtcag acggtagaga cctggaaccg ggacggcggc
     2881 acaagtactg aacaggcgta taaaaatatc ccgttctata tgactaaccg tggctatggg
     2941 gtgctggtca atcaccccca gagtgtctct tttgaagtgg gatcggagaa agtctccaaa
     3001 gtgcagttca gcgttgagag cgaatatctc gaatactttg ttatcgacgg tccgacgccg
     3061 aaagcggtac ttgatcgtta tacccgtttt actggtcgtc cggcgctgcc gcccgcatgg
     3121 tccttcggcc tgtggctaac cacttcattt accaccaact acgacgaagc gacggtaaac
     3181 agctttatcg atggtatggc ggaacgcaat ctgccgctgc atgttttcca ctttgactgt
     3241 ttctggatga aagccttcca gtggtgcgat tttgagtggg acccgctgac tttcccggac
     3301 ccggaaggga tgatccgccg cctgaaagcg aaagggctga aaatctgcgt ctggattaac
     3361 ccctatatcg gtcaaaaatc ccccgtcttt aaagagttac aagagaaagg ctatttactc
     3421 aaacgcccgg acggttcgct atggcagtgg gataaatggc agccaggtct ggcgatttat
     3481 gactttacca atccggatgc ctgcaaatgg tacgccgaca aactgaaagg tctggtcgcg
     3541 atgggcgttg attgctttaa gaccgacttt ggcgaacgta tcccaactga tgttcagtgg
     3601 tttgacggtt ccgatccgca gaaaatgcat aaccattatg cgcacatcta caacgaactg
     3661 gtgtggaacg tgctcaagga caccgttggt gaggaagaag ctgtcttgtt tgcccgctcg
     3721 gcctccgtcg gtgcgcagaa attcccggta cactggggtg gcgattgtta cgctaactac
     3781 gaatcaatgg cggaaagcct gcgcggtggt ttgtctattg gcctttcagg ttttggcttc
     3841 tggagccact atatcggcgg ctttgaaaat accgctccgg cgcacgttta caaatgctgg
     3901 tgcgcgtttg gtttgctctc cagccatagc cgtttacacg gtagcaaatc ttatcgtgtg
     3961 ccgtgggcct acgatgatga gtcctgtgat gtggtgcgct tcttcacgca actgaaatgc
     4021 cgcatgatgc cgtatctgta tcgtgaagct gcgcgtgcaa acgcgcgggg tacgccgatg
     4081 atgcgggcca tgatgatgga gttcccggac gatccggctt gtgattacct tgaccgtcaa
     4141 tacatgttag gcgacaacgt gatggttgcg ccggtgttca ctgaagcggg cgatgtgcag
     4201 ttctacctgc cggaaggtcg ctggacacac ctgtggcaca acgatgagct cgacggtcgt
     4261 tgctggcata aacagcagca cagcttcctg agtctgccca tttatgtgcg tgataacacc
     4321 ctactggcgc tgggcaacaa cgatcaacgt cccgattacg cgtggcacga aggcacggca
     4381 ttccacctct ttaatctgca agacgggcat gaagccgtct gtgaagtgcc cgctgctgac
     4441 ggatcggtga tctttacttt aaaagcagca cgtactggca acacgattac tgtgactggt
     4501 gcgggcgagg cgaagaactg gacactgtgc ctgcgcaatg ttgtgaaagt aaatggtctg
     4561 caagacggtt cgcaggctga aagtgagcag gggctggtgg tgaagcctca agggaatgcg
     4621 ctgacaatta cgttgtaatc tattgatgga atgccgggta cgtctgagtc gtacccggcg
     4681 agattgatgt ttactgcacc agctctgccg acgtaacttc accgctggaa acgatgccag
     4741 cattcatggt ttgagtcact tgctgctttg cggcgttcac ggcatgcaat tgcccgctaa
     4801 ccgtaggttt cagcggggca ttggcctgaa tatctccact ggcggtaagc tgaatattgc
     4861 cgtcgccagt caacggtaat tcaggccatc cccattgttg caaaatattc accggcacac
     4921 cgcgtccatt caggctgata tgggtctgac gttgtggcgt ttgtgaaaca ctggcagtgg
     4981 cttccagaat gcctttttca gtaaatgcac tcagttcgct gatattcacc gtgctgctgt
     5041 tggcggtcag cgccagcgac gggcgacgaa catcaacacg attgaatgtc gcggcggcgg
     5101 cattcagatt cgccgagcca ctccagacgc cccatttatg atcggtaacc agcgtcaggt
     5161 tggcaccgta accatcgagc gtggtgagct gccacgggaa gtcagggtcg atatcaatga
     5221 tcagattgcg gctggcgcta aatctcttca gttgcaggct gtttaaccaa ccgggtgtcg
     5281 tttccatcca caactgttgc cagtttttcg gcaaggtata ttccagcccg gcaattgccg
     5341 catcatcaag gatcaacgtt ttcccgtcac gcagccagtt ccctgacgtt ctgaccatac
     5401 ccccttccca gcggctggtg aactggcgca gcgctacgcc ctgcggggaa aattccgcgt
     5461 ttataatcgg gtcaaataaa tgcagcgaac cataaatgaa ctcgctagcg ttcatcaaca
     5521 gtttgccttc ttgtgtctgc cagtcatctt tactgaaggt catgttgcgc aagctgagat
     5581 cgaggtcggt caccgcccag tccggacctt gcaaatgagc atcgatcact tccaggcgac
     5641 caatctgcaa cgacgggaca gagcgtaatg gcgcaaagaa gtcggttagc gatttttcgc
     5701 tttgtagacg tatatccgcc atgcgcaggt tttccacttg ccagctgccg tcggcgttac
     5761 gctgcgcgtt tccggttaat gtcccgcggg cgatgtcggc acccaggtta gtcagcgtaa
     5821 cgcgatcgtt atcaatactg ccttcaatca gtacattggt ggcaggaaca tcattgagcg
     5881 aaagcgatcc ggcactaaac tgaatctgcg ccttcgtacc cagcacttta ccggcttttg
     5941 gtgaccacgg aactacgccg ccatttaccc gctgcgcgct cagtttccat tcgctattcg
     6001 ggctattaaa cgccatatca cgcagttgca gacgatcggc tttgaacggt agcggcgcgg
     6061 tctggtcggt gagattcagc gtcccgtttt ccagcaggat ggtatcgaca tggcgtggtt
     6121 cggtcagttg ccgactgctt agcgcaatgt cgacactttt ggccaccagg gtcgcgggct
     6181 gaccatcacg accaaacgtg acattctcca gcacgatatg agatggcgcg gaaaaacggt
     6241 gatccatcgc cccgaaggcc agatgatagt cgctattctc ggaaacccat gcgctgatat
     6301 gttctgctcc ccagcgggtt tgcagaagaa aatagaggcc agcgatcacc actaacagag
     6361 cgatgagaat gtagagaagc agcttcccaa taaatttcat ggtcttccat tccgtgaaat
     6421 gcacataaga gagttatgca cgatttacgc gcaatcctca aggcgggaat ggtgaaagag
     6481 gtgagactgc ggcggtaatt atcttaccgc cgccagtgaa ttactgtttt tctggtggga
     6541 aaatcagatt cagcacgatg gcagtaatac cgcccgcggc gatcccggag gagagcaggt
     6601 ttttcagcca ttcaggggca aactgcaaaa tcagcggctg ctgagacacg cccagaccaa
     6661 ccgccagcga cagcgcgata atcagaatcg cccgacggtt cagcggctca cgagaaacga
     6721 tacgcacacc ggaggcggcg atggtgccaa acattacaag cgttgcgccg cccagaaccg
     6781 gttctggaat gtgttgtaca aaaccgctca ctgccgggaa cagacccagc acgatcaaca
     6841 tcagcgcgac gacaaaaccg acatagcggc tggcaacacc agtcaactgg atcactccgt
     6901 tgttttgccc gaagcaggag ttcgggaagg tgttaaacac cgccgaaaca aacgagttca
     6961 ggccgtttgc cagcacgccg cctttcaggc gtttcatgta cagcggaccg gacactggct
     7021 gttcggaaac gtcagaggtc gacgtgatat cgccaatggt ttccagcgaa gtgatcataa
     7081 agaccagcat cagcggcagc agcagactcc attcaatgcc aagaccgtaa tagagcggcg
     7141 ttggcaccat aatcagttct tgcgtcatcg gttcgttgct ttctggcaac atgcccataa
     7201 accacgccag cgcatatccg gccgccatcg caatcaccag tgaggccacg cgtaagtaag
     7261 ggttacgttg acggttaagc aggataatta aggctaagac cacgcctgcc agcagcagat
     7321 ttttcggtgc gccgaaggtg ttatcgctca tggctgcgta accgccgcca atggacgtta
     7381 acccaacctg aattagcgac aggccgataa tcatcaccac aacgccagaa accagcggcg
     7441 taataatgcg gcgcgccaga tgcagaacgc gggagatcac catctcggtg caacttgcca
     7501 gcatcaacgt gccgaacaaa gccgccatca tggtaggaac atcagcacca ccggttttca
     7561 gcgcggtacc gcccataatc agcggggcaa caaagttgaa gctggtgccc tgaatagaca
     7621 acagcccgga gccaaccgga ccccaggtct taatttgaat aatcgatgcc acaccggagg
     7681 caaacagcga catactaata atgtgttgcg tgtcttgtgc cggtaaaccc agcgcctggc
     7741 agattaatag cgctggcgtg atcaccgcaa cgaacatcgc cagcagatgc tgacaggcgg
     7801 caaacagggt ttgaggaagc ggcggacgat cttcaagacg gtaaatcagt tcgctgtttt
     7861 gagtctgcgc aaccggttgc gcattttctg actcgagggt ggaaacagac atcgaaaaca
     7921 atcccgtggt agcaaagcgg gcattttagc tgaccgaaag agaaaagcaa acgtttgcca
     7981 catcctcatc taaatattta aatgagataa atgcactttt ttatataact tttggtattt
     8041 ttctgcttaa aatccatgcc atttgttcat taacagctga gaatttgacc caggaaagca
     8101 taactcgata cccgtcatag ttcatgaagt tgccactgcg cgatgaagta tgacgagtat
     8161 gaaagagtga tgcggataca aaggagtaac tatgtttcat ctcgatactt tagcaacgct
     8221 tgttgccgca acgctgacgt tgctgctcgg gcgtaagttg gtccattccg tctccttttt
     8281 gaagaaatac accataccgg aacctgttgc gggtggtttg ttggtggcgc tggcgctact
     8341 agtactgaaa aaaagcatgg gctgggaagt caactttgat atgtccctgc gcgatccgtt
     8401 aatgctggct ttcttcgcca ccattggcct gaacgccaac attgccagtt tgcgtgccgg
     8461 tgggcgtgtg gttggcatct tcttgattgt ggttgttggt ctgttggtga tgcaaaatgc
     8521 cattggcatt ggtatggcta gcctgttagg gcttgatccg ctgatggggc tgttggccgg
     8581 ttctattacg ctttccggcg gtcacggtac gggcgctgcg tggagtaaat tgttcattga
     8641 acgttatggc ttcaccaatg cgacggaagt ggcgatggcc tgtgcaacgt tcggtctggt
     8701 gctgggcggc ttgattggcg gtccggtggc gcgctatctg gtgaaacact ccaccacgcc
     8761 gaacggtatt ccggatgacc aggaagtccc gacggcgttt gaaaagccgg atgtgggacg
     8821 catgatcacc tcgttggtgc tgattgaaac tatcgcgctg attgctatct gcctgacggt
     8881 ggggaaaatt gttgcgcaac ttttggctgg cactgctttt gaactgccga ccttcgtctg
     8941 tgtactgttt gttggcgtga ttctgagcaa cggtctgtca ataatgggct tttaccgcgt
     9001 ctttgagcgt gcggtatccg tgctgggtaa cgtaagcttg tcgttgttcc tggcgatggc
     9061 gttgatgggg ctgaaactgt gggagctggc ttcgctggcg ctgccgatgc tggcgattct
     9121 ggtggtacag accatcttca tggcgttgta tgccatcttc gttacctggc gcatgatggg
     9181 caaaaactac gatgcggcag tgctggctgc gggtcactgt ggttttggcc tcggtgcaac
     9241 gccaacggca atcgccaaca tgcaggcgat cactgaacgc tttggcccgt cgcacatggc
     9301 gtttttggtg gtgccgatgg tcggtgcgtt ctttatcgat atcgtcaatg cgctggtaat
     9361 taagttgtat ttgatgttgc cgatttttgc cggttaaccg atgaagcggc ggtcttctca
     9421 ccgccgcctt ttacgcattc gagtaacgtt ctgtctccgg catccagcgt tctatcaagg
     9481 cttttgcctg ttgtgggtaa cgttcgtgaa tatgtcgcgc caggcgctga acttccggga
     9541 tcatcgcctg atcgcgcagt aaatccgcca ctttaaattc agcattaccc gtctgacgcg
     9601 tgcctaacaa ttcgccaggg ccgcgaatct ccagatcttt ttgcgcaatc acaaaaccgt
     9661 cgttactgtc gcgcagcact tgcaggcgaa tttgcgccgt tttagaaagc ggcgttttgt
     9721 agagcagcac gcagtgagaa gccaccgcgc cacgacctac gcgcccgcgc agctggtgta
     9781 actgcgccag acccagacgc tcagggtttt cgataatcat caggctggcg ttaggcacat
     9841 caacaccgac ttcaataacg gtagtggcaa ccagcagatg tagctcacct tgtttaaacg
     9901 acgccatcac cgcctgtttc tcggctggtt tcatccgccc gtgtaccagg ccaacattca
     9961 attctggtag cgccagtttc aactcttccc aggtagcttc cgccgcctgc gcttccagta
    10021 actctgactc ttcaatcaac gtacaaaccc agtacgcctg acgaccttca gttatgcagg
    10081 catggcgcac gcggtcaatg atgtcggtac ggcgggtatc aggaatagcg accgtagtca
    10141 ctggcgtgcg gcctggcggc agctcatcta tcaccgaggt atcgagatcg gcatacgccg
    10201 tcattgccag cgtgcggggg atcggcgtgg cggtcatgat caactgatgc ggatggaagc
    10261 cttgctgctg gcctttctcc cataacgcca gacgctgatg cacgccaaag cgatgttgtt
    10321 cgtcgataat caccagcgcc agaccgttaa actgcacctg ttcctggaag atggcgtgcg
    10381 taccaacaat catctgcacc tgaccgctgg cgatggcttc ctgctgagac agtcgcgctt
    10441 tgcctttctg cttaccggcg agccagccca cttcgatacc gagcggttca aaccagttgc
    10501 ggaagttatt ggcgtgctgt tcggcgagta attcggttgg tgccatcaat gccacctgtt
    10561 tgccgtgggc aatcgcacgc agcgcggcga gggcggcgac cagcgtttta ccggaaccta
    10621 catcgccctg taccaggcgc atcatcggca catccagcgc catatcgcgc tcgatctccg
    10681 ccactacgcg tgcctgtgcg cccgttggct tgaacggtaa ggctgcgagg agtttatttt
    10741 tcagcgcatc attggcgctc agcggctggg catgaaaacg ctgtgctccg gcacgtaagg
    10801 ctaacatgct gaggttgtgc gccagcagtt cttccagaat cagacgacgt tgcgccggat
    10861 gctgcccggt ttccagatcg ctaagctgta gcgtcggtgg cgggcggtgc aaagtgcgca
    10921 acgcttccgg tagcgtcatc attccttgtg acagttccgg cggcaggagt tcttcaatgg
    10981 cgcaggtgtc gagcagatcc agcgcctggt cggttaattt acgcagcgtg gcctgcttta
    11041 cgccttccgt tgttggataa accggcgtga gcgtttcctg taattctggc gtgctgagat
    11101 cgccctgcac gcggtattcc gggtggatca tctccgcacc atatttaccg cgctttgctt
    11161 cgccataagc cagtacacgg cggcccgtcg ccaggctatt tttcattgcc gcgctgaaat
    11221 tgaaaaagcg catggtgagg atgccggaac cgtcgctgat ctggcaggtc atcatccgcc
    11281 gaccgccgaa ggagatattg cagttcagca cttcgccttc caccgtggca taaacgcccg
    11341 gcagtagttc tccgatgggg tagagatggg tgcgatcttc gtagcgcagg ggaaggtgta
    11401 agagtagatc ctgcacggta tgcaggttga ttttcgccag tttgttacta agtgctgcgc
    11461 caacgcccgt tagggaactg agtgggacag catctaacag gcgacctgtc atggcactta
    11521 ccctgcagcc tgcatagtag cccaccagtc ggcatcagct tcgatctcgc cttgctgatt
    11581 gacgtgggga taaggcaggc ctttgcgttt tgcgactttc gccagcaccg gatagccgcc
    11641 ttcaaacaac aggcgttgtt gctctgcttc cggcaacatg ctgttttcac gcaggtacat
    11701 gcctgcattt tgccgctgac gctgggcttc gtaaagaatg agggctgagg caacggaaac
    11761 attcagcgac tgcaccatgc cgatcatcgg aatgatgatg tcctgatccg ccagggccaa
    11821 tgcttcctgc gtgatgcccg ttttctcctg tcccatcaaa atgcaggtcg ggcgagtgta
    11881 atcaatttcg cggaaatcga cagcgttatc agaaagatgg gttgccagaa tctgcatgcc
    11941 ctggcctttg agatgagcga cggcatcgcc aatggtgcgg tgtgttttca cctgtaccca
    12001 gctgttacta cccgccgctg ccgaagccat ggtgcgcatg cggctaccag gccagacggc
    12061 gtgaacttca tgtacgccaa cggcatctgc ggtacgaata atcgcagaaa cgttatgagg
    12121 tttgtggacc tgctccatgc agacggtcag atcaggctgc cgcctggcga gcatttcgca
    12181 gatgcgtgca taacgtgttg ggttcataaa acattaattt cggtttcggg tgactttaat
    12241 cacgtctggc atcacgcgga ttttgcgcat gatattcgcc agatgcacac ggtcacgagc
    12301 ggtcagacga ataaaggcgc tgtagacgcg accatctttc tcttccgtat tcaaactttg
    12361 aatattcgaa gtcgtggtgt taattgccgc cgtcaggttt gccagcgcac cctgatgatt
    12421 gaacatctcc accttgattt cggtgatgaa ctcctgcgcc gtctctttat cccattccac
    12481 agccataaac ttctctggct ctttctggta gccacggatg ttacggcagg attcatggtg
    12541 gatcaccaga cctttaccgg ggctgacgtg ggcgataatc gggtcgccag gaatagggcg
    12601 gcagcatttc gcaaaggtga tcagcacgcc atccgcgcct ttgatcggca gatgcccgtg
    12661 gctttgagtc gccggtggaa tggaggcgtc cccatgttgt agatttttcg cgaccaccac
    12721 gctcattgcg ttaccaaggc cgatttctgc cagcagatcg tcaagcgttg ccagcttcat
    12781 gcgatccagc tcgcgctgaa tattttcctg cgggatttca ttgagcttac ggctaccacc
    12841 caaagcatgg ttgagcagac gacggcccag gcttacagaa tcatcacgct tgaggttttt
    12901 cagcaactga cgaattttgg cgcgcgcttt cgagctaacg acaaagttca gccaagcggc
    12961 attcgggcga gcgcccggag cggtaatgat ttcaacggtc tgaccgctag taagcggctg
    13021 cgacagcggg taaggctggc ggtcgacgcg tgcgcccacg caggcatggc cgatatcggt
    13081 atgcactgca taagcgaagt cgacgggcgt tgcaccggca ggcagctcga caatgcgccc
    13141 ttccggtgtg aaaacgtaaa tctcatccgg gaagagatcg gatttaacgc tctcgataaa
    13201 ttcaaacgaa ctaccggcgc tctgttgcag ctccagcagg ctttgcatcc agcgctgggc
    13261 gcgtatttgt gcggtagtac tggtttcgcc gtgctcttta taagcccagt gcgcggcaac
    13321 acccatctcc gccatctgat ccatatcttc ggtacggatc tggacctcaa ccggcacgcc
    13381 gtgcgggcca atcatcgagg tgtgcaacga ctgatagccg ttcgcttttg gaatggcgat
    13441 atagtctttc acgcggcccg gacgcggctt gtacaggctg tgcatctggc ccagcacgcg
    13501 ataacaggtg tcagaatcat tgacgatcac gcggaaagcg tagatgtcca tgattgagtg
    13561 aaaacgctgc tctttgagca ccattttgca gtaaatcgaa taaagatgct tttcgcgacc
    13621 actgacgcgg cacggtattc ccgcttcctg caaacgccct tcgatttcag aaagaatctt
    13681 ctggatcatc tctttacggt tgccgcgcgc ggctttcacc acttctttga ttacgcgata
    13741 acggttggga tacagcgcct caaaacccag ctcttcgagt tcggttttaa tgtggtggat
    13801 acctaaacgg tgcgccagcg ggctgtaaat ttcgagagtt tcacgggcga tgcggcgacg
    13861 tttgtccggg cgaagtgagc ccagcgtgcg catgttgtgg gtacggtcgg caagtttgat
    13921 gaggatgacg cggatatcct gcaccatcgc cataatcatc ttgcgaaagt tttcggcctg
    13981 cgcctctttc ttatcgcgga acttgagttt atcaagtttc gacaccccct ctaccagctc
    14041 ggcgacgctt ttaccaaaaa gctgttccat atcctggtag gtggcgggag tatcttcaat
    14101 cacgtcatgc agcagcgccg ccatcagcgt ttcatagtcg agtttcatct cggccagaat
    14161 gcaggcaacc gctaccgggt gcgtgatata gggttcaccg cttgaacgtg tttgcccctc
    14221 gtgagcatca cgtgcaacga gatacgcctg ccgcagacgc ttgatttggt cttccggcag
    14281 gtaggtttga atcagttgat tcaggctttc aaacagatac aagggcgacc cgctttgtga
    14341 ttaacgacga ccttcagcaa tagcggtaac ggcttgtaat tcagcggctt cctgctcttg
    14401 ctgttcctgg cgttcgcgaa cgtcgaggat ctggttgttg atcagacctt cttcgatttc
    14461 gcgcagcgcg attacagtgg ttttatcgtt ttcttccggt accagcggat cctttccgcc
    14521 tacctgcatc tgacgagcgc gacgcgcggc gaccagtacc aggtcaaaac ggttaccaat
    14581 tttctctaca gcgtcctgaa cagttacgcg tgccatactt aaaaagctcc acaggtgaag
    14641 aaatgactgg gcatgatact gaaatcaggt tcagtctgcc aacaatttgc tgattaaagc
    14701 gtcatgacgc tgcttttggc ggctcatgcg cagacgttcg gcgcgaataa tggtcttcaa
    14761 atcggtcaac gcggtatcga agtcatcatt cacaatcagg taatcatatt cgtcgtaatg
    14821 gctcatttct gcaacagctt gcgccatacg ctttgcaatg acctcttcgc tgtcctgacc
    14881 gcgaccgcgt agacggcggt ccagttcaat tttagacggc ggtaaaataa agatactccg
    14941 cgcgtgcggc atcttctggc gaatttgctg cgcgccctgc cagtcgatat cgagaaaaac
    15001 atcgacaccg gtcgccagta cttgctcaat ggcctcacgc gaagtgccat agtaattacc
    15061 aaaaacttct gcgtgttcga ggaacgcatc tctgctaatc atttctttaa attcatcatg
    15121 attaacaaag aaataatgtt caccgtggac ttcaccagga cgcggttggc gtgtggtgtg
    15181 tgaaacagaa acctgggtgt catacaacgg ttgggttttt aataaagcct gaatcaggct
    15241 ggatttaccc gcgccactgg gggcagaaac aatataaagc gtgccttgag ccatgagtat
    15301 ctttcgtatg tgattagcga aataaagcct acatacgagc ttattataca cggcgcggcc
    15361 atgtgacgta gcccttgctc acactttttg cgcaaagttg ttgcgttttg cgtagctgct
    15421 tccgcatttg cctgtgattt actgcaataa agacgattct caggaagcgt cctcgcagac
    15481 tccgtttttg ccactcggct ttgccttcac cacgttgtat atctgccagc ctgactacag
    15541 cggaggtgaa gatgaaagta tggatggcga tattaataag tatcttgtgc tggcaatcat
    15601 ctgtgtgggc ggtctgtccg gcctggtcgc cagccagagc acaggaagaa attttccgcc
    15661 agcaacagca aataaaacag tgggacgatg actactggaa ggaaggaaaa agtgaggtgg
    15721 aagacggtgt ttacgatcag ttaagcgccc gtcttacgca gtggcaacgc tgctttgtga
    15781 gcgagccccg cgacgtgatg atgccgcctt taaatggtgc ggttatgcat ccggttgccc
    15841 atacgggtgt acgcaaaatg gcggataaaa acgcattaag tctgtggatg cgagaacgta
    15901 gcgatctttg ggtgcagcca aaagttgatg gcgttgcggt aaccctggtt tatcgggacg
    15961 ggaaactgaa caaagcaatc agtcgcggta atggcctgaa aggcgaggac tggacgcaga
    16021 aagttagctt aatttccgct gtgccgcaaa ccgttagcgg gcctttagcc aacagtacgc
    16081 ttcaggggga aatatttctc cagcgcgagg ggcatatcca acaacaaatg gggggaataa
    16141 atgcccgcgc aaaagttgct ggcttgatga tgcgccagga cgatagcgac acgctgaatt
    16201 ctctgggcgt ttttgtctgg gcatggccgg atggaccgca gttaatgtct gatcgtttaa
    16261 aagagctggc taccgcaggt tttactctaa cgcagacgta tacccgtgcg gtgaaaaatg
    16321 ctgatgaagt tgcgcgcgta cgcaatgagt ggtggaaagc ggaattaccc ttcgtcaccg
    16381 atggcgtagt tgtacgagcg gcgaaagagc cagaatcccg ccattggcta ccgggccagg
    16441 cagagtggct ggtggcctgg aaatatcaac ctgtagctca ggttgccgaa gtgaaggcga
    16501 ttcagtttgc ggtgggtaag agcggtaaaa tatcggtggt tgcgtcactc gcatctgtca
    16561 tgctggatga taaaaaagtc cagcgggtga atattggttc cgtcaggcgc tggcaggagt
    16621 gggatattgc gcctggtgat cagattctcg tcagccttgc cggtcagggt attcctcgca
    16681 ttgatgatgt ggtgtggcgc ggtgcagaac gtacaaaacc gacaccgcca gaaaaccgct
    16741 ttaactcgtt gacctgctac tttgcttctg atgtttgtca ggaacagttc atttcacgct
    16801 tagtctg
//
LOCUS       DADMJB010000089        16797 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.089, whole genome shotgun sequence.
ACCESSION   DADMJB010000089 DADMJB010000000
VERSION     DADMJB010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16797
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.089"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..2017
                     /gene="fhuE"
                     /locus_tag="JN078_002514"
     CDS             <1..2017
                     /gene="fhuE"
                     /locus_tag="JN078_002514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ferric-rhodotorulic acid/ferric-coprogen
                     receptor FhuE"
                     /protein_id="HAY9041678.1"
                     /translation="DYSVTSTSAGTKMQMTQRDIPQSVTIVSQQRMEDQQLQTLGEVM
                     ENTLEISKSQADSDRALYYSRGFQIDNYMVDGIPTYFESRWNLGDALSDMALFERVEV
                     VRGATGLMTGTGNPSAAIDMVRKHATSREFKGDVSAEYGSWNKERYVADLQSPLTEDG
                     KIRARIVGGYQNNDSWLDRYNSEKTFFSGIVDADLGDLTTLSAGYEYQRIDVNSPTWG
                     GLPRWNTDGSSNSYDRARSTAPDWAYNDKEINKVFMTLKQRFADTWQATLNATHSEVE
                     FDSKMMYVDAYVNKADGMLVGPYSNYGPGFDYVGGTGWNSGKRKVDALDLFADGSYEL
                     FGRQHNLMFGGSYSKQNNRYFSSWANIFPDEIGSFYNFNGNFPQTDWSPQSLAQDDTT
                     HMKSLYAATRVTLADPLHLILGARYTNWRVDTLTYSMEKNHTTPYAGLVFDINDNWST
                     YASYTSIFQPQNDRDSSGKYLAPITGNNYELGLKSGWMNSRLTTTLAIFRIEQDNVAQ
                     STGTPIPGSNGETAYKAVDGTVSKGVEFELNGAITDNWQLTFGATRYIAEDNEGNAVN
                     PNLPRTTVKMFTSYRLPVMPELTVGGGVNWQNRVYTDTVTPYGTFRAEQGSYALVDLF
                     TRYQVTKNFSLQGNVNNLFDKTYDTNMEGSIVYGAPRNFSITGTYQF"
     gene            complement(2077..3510)
                     /gene="ptsG"
                     /locus_tag="JN078_002515"
     CDS             complement(2077..3510)
                     /gene="ptsG"
                     /locus_tag="JN078_002515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000475716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIBC"
                     /protein_id="HAY9041679.1"
                     /translation="MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVV
                     SHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAAVVAYGIMVKTMAVVAPLVLH
                     LPAEEIASKHLADTGVLGGIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLA
                     AIFTGVVLSFIWPPIGSAIQTFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPF
                     QMQIGEYTNAAGQVFHGDIPRYMAGDPTAGKLSGGFLFKMYGLPAAAIAIWHSAKPEN
                     RAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMHDG
                     TSFSHGLIDFIVLSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGREDATED
                     AKATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVV
                     AGSGVQAIFGTKSDNLKTEMDEYIRNH"
     gene            complement(3805..4602)
                     /locus_tag="JN078_002516"
     CDS             complement(3805..4602)
                     /locus_tag="JN078_002516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HAY9041680.1"
                     /translation="MFLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTL
                     PGYLHMRDLVGERDNVVFSCGVHPLNQNDPYDVEDLRRLAAEEGVVALGETGLDYYYT
                     PETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTED
                     RETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKE
                     NQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRLQSIR"
     gene            complement(4613..5617)
                     /gene="holB"
                     /locus_tag="JN078_002517"
     CDS             complement(4613..5617)
                     /gene="holB"
                     /locus_tag="JN078_002517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HAY9041681.1"
                     /translation="MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL
                     SRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGIDAVREVTEKLNE
                     HARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR
                     LHYLAPPPEQYTVTWLSREVTMSQDALLAALRLSAGSPSAALALFQGDNWQARETLCQ
                     ALAYSVPSGDWYSLLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAE
                     LANHLSPSRLQAILGDVCHIREQLMSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL
                     "
     gene            complement(5614..6255)
                     /locus_tag="JN078_002518"
     CDS             complement(5614..6255)
                     /locus_tag="JN078_002518"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HAY9041682.1"
                     /translation="MRSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGT
                     QLAEKLRSLVLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHD
                     LSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIE
                     QESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKELDA"
     gene            complement(6245..7267)
                     /gene="yceG"
                     /locus_tag="JN078_002519"
     CDS             complement(6245..7267)
                     /gene="yceG"
                     /locus_tag="JN078_002519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein YceG"
                     /protein_id="HAY9041683.1"
                     /translation="MKKVLLIILLLLVVLGIAAGVGVWKVRHLADSKLLIKEETIFTL
                     KPGTGRLALGEQLYADKIINRPRVFQWLLRIEPDLSHFKAGTYRFTPQMTVREMLKLL
                     ESGKEAQFPLRLVEGMRLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGW
                     FWPDTWMYTANTTDVALLKRAHKKMVKAVDSAWEGRADGLPYKDKNQLVTMASIIEKE
                     TAVASERDQVASVFINRLRIGMRLQTDPTVIYGMGERYNGKLSRADLETPTAYNTYTI
                     TGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVL
                     KEKNAQ"
     gene            complement(7270..8079)
                     /gene="pabC"
                     /locus_tag="JN078_002520"
     CDS             complement(7270..8079)
                     /gene="pabC"
                     /locus_tag="JN078_002520"
                     /EC_number="4.1.3.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate lyase"
                     /protein_id="HAY9041684.1"
                     /translation="MFLINGHKQESLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQ
                     RLQDACQRLMIFCDFWPQLEQEMKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATR
                     ILSVTVYPAHYDRLRNEGMTLALSPVRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNAD
                     EALVLDSEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVE
                     VQASLEEALQADEMVICNALMPVMPVRACGDVSFSSATLYEYLAPLCERPN"
     gene            complement(8199..9440)
                     /gene="fabF"
                     /locus_tag="JN078_002521"
     CDS             complement(8199..9440)
                     /gene="fabF"
                     /locus_tag="JN078_002521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HAY9041685.1"
                     /translation="MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTS
                     AYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIG
                     AAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISI
                     ATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQA
                     ASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPEN
                     GAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKAIFGEAASRVLVSS
                     TKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNLDEGCDLDFVPHEARQVSGME
                     YTLCNSFGFGGTNGSLIFKKI"
     gene            complement(9528..9764)
                     /gene="acpP"
                     /locus_tag="JN078_002522"
     CDS             complement(9528..9764)
                     /gene="acpP"
                     /locus_tag="JN078_002522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016535861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HAY9041686.1"
                     /translation="MSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELV
                     MALEEEFDTEIPDEEAEKITTVQAAIDYINGHQA"
     gene            complement(9975..10709)
                     /gene="fabG"
                     /locus_tag="JN078_002523"
     CDS             complement(9975..10709)
                     /gene="fabG"
                     /locus_tag="JN078_002523"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HAY9041687.1"
                     /translation="MNFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQA
                     ISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEE
                     WNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIG
                     FSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIANA
                     VAFLASDEAAYITGETLHVNGGMYMV"
     gene            complement(10722..11651)
                     /gene="fabD"
                     /locus_tag="JN078_002524"
     CDS             complement(10722..11651)
                     /gene="fabD"
                     /locus_tag="JN078_002524"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HAY9041688.1"
                     /translation="MTQFAFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDL
                     WALTQQGPAEELNKTWQTQPALLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCA
                     GVIDFADAVRLVEMRGKFMQEAVPEGTGAMAAIIGLDDASIAKACEEAAEGQVVSPVN
                     FNSPGQVVIAGHKEAVERAGAACKAAGAKRALPLPVSVPSHCALMKPAADKLAVELAK
                     ITFNAPTVPVVNNVDVKCETNGDAIRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVG
                     PGKVLTGLTKRIVDTLTASALNEPSAMAAALEL"
     gene            complement(11667..12620)
                     /locus_tag="JN078_002525"
     CDS             complement(11667..12620)
                     /locus_tag="JN078_002525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HAY9041689.1"
                     /translation="MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHI
                     AAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG
                     CPAFDVAAACAGFTYALSVANQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDG
                     AGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVT
                     ELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTS
                     AASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF"
     gene            complement(12688..13758)
                     /gene="plsX"
                     /locus_tag="JN078_002526"
     CDS             complement(12688..13758)
                     /gene="plsX"
                     /locus_tag="JN078_002526"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415608.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HAY9041690.1"
                     /translation="MTRLTLALDVMGGDFGPSVTVPAALQALNSNSQLTLLLVGNPDA
                     ITPLLAKADFEQRSRLQIIPAQSVIASDARPSQAIRASRGSSMRMALELVKEGRAQAC
                     VSAGNTGALMGLAKLLLRPLEGIERPALVTVLPHQQKGKTVVLDLGANVDCDSTMLVQ
                     FAIMGSVLAEEVVEIPNPRVALLNIGEEEVKGLDSIRDASAVLKTIPSINYIGYLEAN
                     ELLTGKTDVLVCDGFTGNVTLKTMEGVVRMFLSLLKSQGEGKKRSWWLLLLKRWLQKS
                     LTRRFSHLNPDQYNGACLLGLRGTVIKSHGAANQRAFAVAIEQAVQAVQRQVPQRIAA
                     RLESVYPAGFELLDGGKSGTLR"
     gene            complement(13839..14012)
                     /gene="rpmF"
                     /locus_tag="JN078_002527"
     CDS             complement(13839..14012)
                     /gene="rpmF"
                     /locus_tag="JN078_002527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HAY9041691.1"
                     /translation="MAVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHIT
                     ADGYYRGRKVIAK"
     gene            complement(14064..14585)
                     /gene="yceD"
                     /locus_tag="JN078_002528"
     CDS             complement(14064..14585)
                     /gene="yceD"
                     /locus_tag="JN078_002528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001174481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA accumulation protein YceD"
                     /protein_id="HAY9041692.1"
                     /translation="MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSD
                     VECSMSFAIDNQRLAVLNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEAL
                     PEAYEPIEVNEFGEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEVQK
                     PNPFAVLASLKRK"
     gene            14784..15368
                     /gene="yceF"
                     /locus_tag="JN078_002529"
     CDS             14784..15368
                     /gene="yceF"
                     /locus_tag="JN078_002529"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415605.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-methyl-GTP pyrophosphatase"
                     /protein_id="HAY9041693.1"
                     /translation="MPKLILASTSPWRRALLEKLQISFECAAPEVDETPRSDESPRQL
                     VLRLAQEKAQSLASRYPDHLIIGSDQVCVLDGEITGKPLTEENARLQLRKASGNIVTF
                     YTGLALFNSANGHLQTEVEPFDVHFRHLCEAEIDNYVRKEHPLHCAGSFKSEGFGITL
                     FERLEGRDPNTLVGLPLIALCQMLRREGKNPLMG"
     gene            complement(15480..16439)
                     /gene="rluC"
                     /locus_tag="JN078_002530"
     CDS             complement(15480..16439)
                     /gene="rluC"
                     /locus_tag="JN078_002530"
                     /EC_number="5.4.99.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(955/2504/2580) synthase
                     RluC"
                     /protein_id="HAY9041694.1"
                     /translation="MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRK
                     GEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHI
                     LVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSAL
                     RSLHEQLREKGMQKDYLALVRSQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSET
                     RFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG
                     LNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR"
BASE COUNT         4178 a         4559 c         4052 g         4008 t
ORIGIN      
        1 tgattacagc gtaacgtcta cctctgcggg taccaaaatg cagatgactc aacgtgatat
       61 tcctcagtcg gtcactattg ttagccagca gcggatggaa gatcagcagt tacaaacgct
      121 gggcgaagtg atggaaaaca cgctggagat cagcaaaagt caggcggatt ccgatcgtgc
      181 tctttattat tcccgcggat tccagatcga taactatatg gttgatggta tccccaccta
      241 ttttgaatcg cgctggaatc tgggcgatgc actttctgat atggcactgt ttgaacgcgt
      301 agaagtagtg cgtggcgcga caggactcat gaccgggacg ggtaatccat ctgcggcaat
      361 tgatatggtt cgaaaacacg cgaccagtcg tgaatttaaa ggcgatgtct cggcggaata
      421 cggtagctgg aacaaagaac ggtatgtggc ggatttacaa agcccactca ccgaagacgg
      481 taaaatccgc gcgcgaattg tcggcggcta ccagaataac gactcatggc tggaccgcta
      541 caacagtgaa aagaccttct tctccggcat tgtcgatgct gatttaggcg atcttacgac
      601 gctttcagcc ggttacgaat atcagcgcat tgatgttaat agccctacct ggggcggttt
      661 accgcgctgg aatactgatg gcagcagcaa cagttacgat cgtgcacgca gtaccgcacc
      721 tgactgggcg tacaacgata aagagatcaa caaggtcttt atgaccctga agcagcggtt
      781 tgctgatacc tggcaagcga cactgaatgc cacccactct gaagtcgaat ttgacagcaa
      841 aatgatgtat gtcgatgcct atgtaaacaa agcggatggt atgctggttg ggccatacag
      901 taattatgga cctggctttg attatgtcgg cggcaccggt tggaacagtg gcaaacgtaa
      961 agttgatgcg ctagatttgt tcgctgacgg tagttatgaa ttgtttggtc gtcagcacaa
     1021 tctaatgttt ggtggcagtt acagcaaaca aaacaatcgt tacttcagtt catgggccaa
     1081 catcttcccg gatgaaattg gcagtttcta caactttaat ggcaatttcc cacaaaccga
     1141 ctggtcacca cagagcctgg cacaggacga taccacacat atgaaatcgt tatatgctgc
     1201 cactcgagtc acccttgccg atccgctgca tctgatcctc ggcgcacgct ataccaactg
     1261 gcgggttgat acgctgactt acagcatgga gaaaaaccac accacgcctt acgctggtct
     1321 ggtgtttgac atcaatgaca actggtcgac ctacgccagc tatacctcta ttttccagcc
     1381 gcaaaatgat cgtgacagtt caggcaaata tctggctcca atcaccggta acaactacga
     1441 gctgggtctg aaatcgggct ggatgaatag ccgtctgacc accacgttag ccatcttccg
     1501 tattgagcag gataatgtcg ctcagtccac cggtacacct atccccggca gcaacggcga
     1561 aaccgcctat aaagcggtgg atgggacagt cagtaaaggg gtggaatttg aactcaacgg
     1621 cgcaattacc gacaactggc agctgacatt tggcgcaacg cgctatattg cagaggataa
     1681 cgaaggaaac gccgttaatc ctaatctgcc acgcaccacg gttaaaatgt tcaccagcta
     1741 tcggttgcct gtcatgccag agttgacagt cggcggtggt gtgaactggc aaaatcgcgt
     1801 gtataccgac accgtgacac cgtatggcac cttccgcgcc gagcaaggta gctacgcgct
     1861 ggtggatctc ttcacccgct accaggtgac gaaaaacttc tcgttacagg ggaacgtcaa
     1921 taacctgttc gacaaaacct acgataccaa catggaaggt tctatcgtct acggcgcacc
     1981 gcgtaatttc agcattaccg gcacgtatca attctgaata acacctgtaa aaaaggcagc
     2041 catctggctg ccttagtctc cccaacgtct tacggattag tggttacgga tgtactcatc
     2101 catctcggtt ttcaggttat cggatttagt accgaaaatc gcctgaacac cagaacccgc
     2161 aaccactacg cccgctgcgc ccagtttctt caggccagcc tgatccactt tagacacatc
     2221 agcaacgctg acgcgcagac gggtaataca tgcgtcgagg ttagtaatgt tttctttacc
     2281 accaaatgca gcaaccagag ccggtgccat ttcgctggta cctgttgctt ttgcatcttc
     2341 agtcgcgtct tcacgacccg gcgttttcag atccagtgct ttaatcagca cgcggaagat
     2401 ggtgtagtaa acaatcgcat aaccgatacc gacgatcggg aacagccaca gtttgctgct
     2461 gttaccagac agaacgataa agtcgatcag accgtgcgag aacgacgtac cgtcatgcat
     2521 ccccagaaga atacagattg ggaatgccag gcctgccaga atcgcgtgga tgatgtacag
     2581 gatcggcgca acgaacatga aggagaactc gatcggctcg gtgataccgg tcaggaacga
     2641 ggtcagcgcc gcggagatca taataccgcc cactttcgcg cggttttctg gtttagcaga
     2701 gtgccagata gcaattgcgg cagctggcag accgtacatt ttgaacagga agccaccaga
     2761 cagtttaccc gcagtcgggt cacccgccat ataacgcgga atgtcgccgt ggaaaacctg
     2821 acctgctgcg ttggtgtatt caccaatctg catctggaaa ggtacgttcc agatgtggtg
     2881 cagaccaaac ggtaccaggc aacgttcgat gaaaccgtaa atgccaaacg caactaccgg
     2941 gttctggtaa gcagcccact gagagaaggt ctggattgca gaaccaatcg gcggccaaat
     3001 gaaggacagc acaacgccag taaagatggc agccaggcca gaaatgatcg gcacaaagcg
     3061 tttaccggca aagaagccaa gatactcagg cagcttaata cggtagaaac ggttaaacat
     3121 gtacgctgcg atcgcaccgg agataatccc tccgagtacg ccagtatccg ccaggtgttt
     3181 agaggcgatt tcttcagcag gtaaatgcag taccagtggc gcaaccacgg ccatggtttt
     3241 aaccatgatg ccataggcaa caactgcggc cagcgcggat acgccatcgt tattggtaaa
     3301 gccgagggcg acaccgatcg caaaaatcag tggcatgttt gcaaagacgg aaccgcctgc
     3361 ttctgccata acatgcgata caacggcggg cagccagctg aaattcgcgg aaccgacgcc
     3421 cagcagaata cctgcgatag gtagtacgga taccggcagc atcagcgatt taccgacctt
     3481 ttgcaggtta gcaaatgcat tcttaaacat aattgagagt gctcctgagt atgggtgctt
     3541 tttttacgtt ctcacgcgtg gcaagggggg agagcctcgc cgtgtacagg gcatctaagc
     3601 gccctttatt tattacacag agtaaaataa ttcagtgcca atttgtttga cggctatcac
     3661 gtttcaactt cagatcattg gagaagttgc acattttgac aaaacatatg tcacaatatt
     3721 tcaaacgcgg ttattcaccg cccaattttc ggcggtgaac tttactcgtt ttagccatta
     3781 attacgagct ttaaaaaaac tcattcaacg gatggattga aggcgggaag cgtcgatgtg
     3841 aaacagacgg gcgaagttat cggtggttac ctgcgccagt tcttcaacgg caacaccttt
     3901 caacacagcc atgtattctg caacgtcacg aaccatcgca ggttgattct cttttcctcg
     3961 atgcggtacc ggcgcaaggt aaggtgagtc agtttccacc agtaatcgat ccagggggac
     4021 ataacgcgca gcatcgcgca gttgctccgc attacggaag gtcacaatgc cggaaaagga
     4081 gatgtaaaat ccgagatcca gtaatttacc cgccgtttct ctgtcctctg taaaacagtg
     4141 tagtacgcca ccgcaatccg tcactttttc ttcgcgcaga attgccagcg tatcggcacg
     4201 ggcgtcacgg gtatggacga taaccggctt gttcagttca cgaccaatct ggatatgatg
     4261 gatgaaggac tcttgctgac gtactttagt ttccggtgtg taataataat ccagcccggt
     4321 ttcacccagc gctacaacac cctcttctgc cgccagacgg cgtaaatctt ctacatcgta
     4381 gggatcattc tggttgagtg gatgcacgcc acaagaaaat acgacgttgt cacgttcgcc
     4441 taccagatcc cgcatatgta aataacccgg taatgttgtg gcgactgcca gacaaaattt
     4501 cacatcgcgt gcggcggctt tcgccagaac gtcatccacg tccttatgca aagattcata
     4561 atccagacca tcgagatggc agtgtgagtc gactaaaaac atgatgtctc tcttaaagat
     4621 gaggaaccgg tagcacaacg cccggttgca ggtaatgctc aatacgcagt aaaagatcgg
     4681 tgatgagaag ctcgcggttg atgcctgtga cagacattaa ctgttcacga atgtggcaaa
     4741 catcccccag tatagcctgc aggcgcgagg gagaaagatg gtttgccagt tcggcgacca
     4801 ggcccggcac atcaacattg gtcacctgtg cagcgccatg atggcgtttt agcgcatcca
     4861 tcagcaacgt tgccagccag tgtaaacgcg ccggagcttg ttcatgatta agggccgcca
     4921 gcagcgaata ccagtcgccc gatggtacgc tatatgccaa cgcctgacac aatgtttcac
     4981 gagcctgcca gttatctccc tgaaacaacg ccagtgccgc gctaggcgaa ccggcactta
     5041 agcgcaatgc ggcaagtaat gcatcctgtg acattgtcac ttcgcgtgaa agccaggtca
     5101 cggtgtactg ttccggcggc ggcgcaaggt aatgtaaccg acaacgacta cgtaatgttg
     5161 ccagtaaacg ttcaggctcg cgggtagcca ggaaaaacca ggtttctgct ggtggctctt
     5221 caagcgtttt cagcaatgcg ttagccgcgg cgtcggtcag taaggcagca tcggttaccc
     5281 agacaacttt cgcaccacct aggcgtgcgt gctcattcag cttttcggtg acctcacgta
     5341 ccgcatcaat gcccagcgta tttttccctt tttcgggagc cagggtgtag taatcgggat
     5401 gcgtgccagc ctgcatcaac tgacatccac gacagtgacc gcaacttttg tggccctgcg
     5461 gttgttggca gagtaaataa cggctcaggg cgtagattaa agcatcatcg cccatgcccg
     5521 gtaacgcctg aatgagtagc gcatggtgac ctcttccggc ctgatagctg gctaccagtt
     5581 tttcgaaatc aggtcgtaac catggatacc atctcatgcg tccaactcct tcacccagtg
     5641 ggtcacggta gtacggattg catccatcac ggcctccagc ggctgggtgg catcaatggt
     5701 atgaatactt ttatcttgtg cagccagttc cagatagcgg gcgcgggtgc gattaaagaa
     5761 atcgaaagac tcttgctcaa tacgatccag ctcgccgcgc gcacgcgcgc gttttaagcc
     5821 aacttccggg gtaacatcga gatagagcgt taagtcaggg cgaaaatccc cgagaacagc
     5881 atcacgcagt gttgccagca tatgttggtc aataccacgt cctccgccct gatacgcctg
     5941 agtggagaga tcgtggcgat cgccaatcac ccaggtgccg ttagccagag ctggtttgat
     6001 gaccgtttct accagttgaa cgcgcgcggc ataaaacatc agaacttcgg ctttatcggt
     6061 aatgacttca tcgcctaccg atttgatatc cagcaccagg cttcttaact tttcggcaag
     6121 ttgcgtaccg ccaggttccc gagtgaaaac catgtcgcgg atacccagtt gctcaagcgt
     6181 ctcaaccacc acattacgcg cggtagtttt gcctgcgcct tccagcccct caatgacgat
     6241 atacttactg cgcatttttt tccttaagca ctttcagata atcctgcaca gacttgttat
     6301 ggctggcaag attggtatta aacgtgtgac cacctttacc atcggccaca aaatagagat
     6361 acggcgtttt tgccggatgc gcagcagcct tcagcgaatc cgcccccggc gtagctatcg
     6421 cacctggcgg caaaccggta atggtatagg tgttatacgc tgtcggcgtt tccaggtctg
     6481 cacgagaaag tttgccatta taacgctctc ccatcccgta aatcacggtt gggtcggtct
     6541 gcaggcgcat accaatgcgt aaacggttga taaataccga ggcaacctga tcgcgttcac
     6601 tggcaacggc ggtttctttt tcgataattg atgccatcgt caccagctgg tttttatctt
     6661 tataaggcag accgtccgca cgcccttccc aggcgctatc gaccgctttc accattttct
     6721 tgtgcgctcg cttgagtaac gcgacatcgg tggtattggc ggtatacatc caggtgtctg
     6781 gccagaacca accttcaatc cactccgggt tttccagttc aagtgcctgc gctacggtgg
     6841 cgtacttatc gtcactcagc gtgtgcttga tatacggagc ctcacgcaat tgcttgaggt
     6901 agtcgctcag acgcatccct tctaccagtc gcagcgggaa ctgtgcttct ttaccgcttt
     6961 ccagcaattt cagcatctcg cgcacggtca tctgcggtgt aaagcggtaa gtcccggctt
     7021 taaagtgaga aagatccggt tcgatacgca gcaaccattg aaaaacccgt gggcgattga
     7081 tgatcttatc ggcataaagc tgttcaccaa gcgccagacg tccggtccct ggcttcaggg
     7141 taaatatcgt ctcttctttg ataagcaatt tgctgtcggc aagatggcga accttccaga
     7201 cgcccacacc agcggcgata cccagtacca ccagcaataa caagataatc aataacactt
     7261 ttttcatgac taattcgggc gctcacaaag tggggctaaa tattcatata acgttgctga
     7321 cgaaaaggag acatcgccac aggcacgtac gggcatcact ggcattaacg cattacaaat
     7381 aaccatctca tctgcctgca acgcctcttc cagagaggct tgcacttcga caagctgata
     7441 agaggattgt gccagcaaac ggatacagaa ttgtcgcata atgccgttaa cacctgcctg
     7501 atccagtcgc ggcgtataaa ctacattgcc cttccgccag aacaaattag ccgcacagca
     7561 ttccgtaacc cacccttcgc tgtcaaggac cagcgcctca tcagcgtttg tctgctcaag
     7621 atgagagcgg atcaatactt gctcaagccg attaagatgt ttaatacctg caagatgggg
     7681 attgcgcccc agccgcaccg ggcttagcgc caacgtcatc ccttcgttac gcaaacggtc
     7741 gtaatgtgca ggataaaccg taacggagag aatccgcgtt gccggtccac tgttcaatgt
     7801 gctgtaccct cgcccgccac taccgcgact gatcacgact ttcagcacac cattttgctg
     7861 ttctgctgcc agcgttttca tctcttgttc aagctgaggc cagaagtcac agaaaatcat
     7921 caaccgctga caagcatcct gtagtcgctg gatatgcgcc gataacaaac tgactttacc
     7981 gtcgataact ctggcggtgg taaaacaacc atcaccaaac tgcgttgccc gatcgcttac
     8041 tgccagcgat tcctgcttat gaccgttaat taagaacata ccggctcctt atcagagaat
     8101 tgttagtgtg gcagcatgct cactacggaa caagtcggaa taaaagctaa gaaaaaaggc
     8161 ccgcaagcgg accttttata tgggtgggaa atgacaactt agatcttttt aaagatcaaa
     8221 gaaccattag tgccaccgaa gccgaaggag ttacacagcg tgtattccat tccgctgacc
     8281 tgacgtgctt catgcggtac gaaatccaga tcgcaacctt catccaggtt atccaggttg
     8341 atggttggcg gaacagcctg atcgcgcagc gccaggatgg agtagataga ctctactgcc
     8401 cccgccgcac ctaacaggtg accggtcata gatttcgtgg agcttaccaa cacacggctt
     8461 gcagcttcac cgaagatggc tttcaccgcc tgcgcttcag ctttatcgcc agccggcgta
     8521 gaagtaccgt gcgcgttaac gtagccaatc tgactcgctt caatgcctgc atcacgcaga
     8581 gcatttgcca ttgccagagc tgcgcctgcg ccattttctg gcggtgacgt catatgataa
     8641 gcatcgctgc tcataccaaa gccgacgagt tcagcgtaaa ttttcgcacc gcgttttttc
     8701 gcgtgttcgt actcttctag taccagcata ccggcaccat cgcccagtac gaagccatca
     8761 cgctctttat cccacgggcg gctcgccgct tgcgggttat cattgcgggt agataatgca
     8821 cgtgccgcgc caaaaccacc aacgcccagc ggcgtactgg ctttctctgc gccacctgca
     8881 accatcacgt cagcatcgcc atacgcgata atacgcgcag catgaccaat gttgtgcacg
     8941 ccggaagtac aggcggtcgc gatagagatg cttgggccac gcaggccata catgatagtc
     9001 agatgacctg ccaccatgtt cacaatcgtt gacggaacga agaatgggct gatcttacgt
     9061 ggaccaccgt tcatcagaga tgtgtggttt tcttcgatca gtccgaggcc gccaatcccg
     9121 gagccaattg cggcaccaat gcgggttgcg ttctcttccg ttatttcaag gccagaatcc
     9181 tgcatggcct gaacgccagc gacaattcca tattgaatga aggcatccat cttgcgctgt
     9241 tctttgcgcg agataatgtc ctcacagtta aaatccttta ctaagccagc aaatttcgtt
     9301 gcataggcgc tagtatcgaa atggtcgatt aggctgatgc cactctgacc ggcaagcaga
     9361 gctttccagg tagactctac ggtattgccg acaggagaca acatgcccag tccggtcaca
     9421 actacacgac gcttagacac gtttgtcctc cagggaggga aaaaatgatt ctagtgggac
     9481 aaaaagataa aactcaggcg gtcgaacgac cgcctggaga tgttcactta cgcctggtgg
     9541 ccgttgatgt aatcaatggc agcctgaacg gtggtgattt tctcagcttc ttcgtccgga
     9601 atctcagtat caaactcttc ttccagagcc attaccagct caacggtgtc aagagaatcc
     9661 gcgcccaggt cttcaacgaa agaagcattg ttggtaactt cttcctgctt aacgcccagc
     9721 tgttcgccga taattttctt aacgcgttct tcgatagtgc tcatactctt aaatttccta
     9781 tcaaaactcg ctttcgcgat ggttttcgta gtgtataaaa tgttgaaaaa tttgcaacta
     9841 aatcccggca ggtcttacca cgattttacg ttattttgag gccttacccc ccaataacgc
     9901 aaatcatttt gcactaatta ttactcataa ccacgcagac tgcgcgcaac atgagcattt
     9961 tgtgcaaatc gcggtcagac catgtacatc ccgccgttca catgcaaagt ttcacccgtg
    10021 atgtaagctg cttcgtcgga tgccaggaat gcaaccgcgt tggcgatttc ctgtgcgccg
    10081 ccgaggcgac ccgcaggaac ctgcgccagg atacccgcac gctggtcatc gctcagcgca
    10141 cgtgtcatgt ccgtttcaat aaagcccgga gcaacaacgt ttacagtaat accgcgtgac
    10201 gcaacttcgc gcgccagtga tttactgaag ccgatcaagc ccgctttcgc cgcagcgtag
    10261 ttggcctgac cgccatttcc catggtacca accacagaac cgatagtgat aatacgacca
    10321 tgacgctttt tcatcatagc gcgcattacc gcttttgaca gacggaaaac agatgaaagg
    10381 ttggtttcga taatatcgtt ccactcttca tctttcattc gcattaacag gttatcacga
    10441 gtgataccgg cattattgac caggatatcc acttcaccaa attctgcgcg aattttttcc
    10501 agaacagatt cgatagatgc cgggtcggtc acattcaaca tcagaccttt gccgttagca
    10561 cctaaataat cactgatcgc ctgagcgcca ttttcactgg tcgcagtgcc aataactttc
    10621 gcgccacggg ctgcgagcgt ttcagcaatt gcgcggccaa ttccgcggct tgcaccggtt
    10681 accagtgcga tttttccttc aaaattcatg attttcctct tttaaagctc gagcgccgct
    10741 gccatcgctg aaggttcgtt cagcgccgag gcggtcaggg tgtcgacaat gcgtttcgtc
    10801 aggccagtta gcactttgcc cgggccgact tcatagagat gttctacgcc ttgcgctgcc
    10861 atgtactcaa cagacttcgt ccactgaacc gggttataca actgacgtac cagtgcgtca
    10921 cgaatggcat caccattggt ttcgcatttc acatcaacgt tattcacaac aggaactgtt
    10981 ggtgcgttaa aggtgatttt cgctaattct actgccagtt tgtcggctgc tggtttcatc
    11041 agcgcacagt gagacggtac gctcactggt aacggcagcg cgcgttttgc gcccgcagct
    11101 ttacaggcag cgccagcacg ctcaaccgcc tctttatgac cggcaataac cacctgtccc
    11161 ggagagttaa agtttaccgg agaaacgacc tgaccttctg cagcttcttc acacgctttc
    11221 gcaatagacg catcatccag accgatgatt gccgccatag cgcccgtgcc ttctggtacg
    11281 gcttcttgca tgaacttgcc gcgcatctca accagacgca ccgcatcagc gaaatcaatc
    11341 acgccagcgc aaaccaacgc ggagtattcc cccaggctgt gaccggccat cattgccggt
    11401 gctttaccgc cctgctgctg ccatacgcga tacagcgcaa cagatgcagt caacagcgct
    11461 ggctgggttt gccaggtttt attcagttct tcagctggcc cctgctgggt cagcgcccac
    11521 aggtcgtagc ccagcgccgc agaagcttca gcaaacgttt cttcgacaat tggatagctc
    11581 gccgccatat cagccagcat tccaacggtt tgagaaccct gtccagggaa cacaaatgca
    11641 aattgcgtca tgttttaatc cttatcctag aaacgaacca gcgcggagcc ccaggtgaat
    11701 ccaccgccaa aggcttcaag cagaaccaac tgccccggct taatgcgccc gtcgcgtaca
    11761 gcttcatcca gcgcgcacgg gacagaggcc gcagaggtat taccgtggcg atccaacgtc
    11821 accacgacat tgtccataga cataccgagt tttttcgccg ttgcactgat aatacgcagg
    11881 ttagcctgat gcggaaccag ccagtccagt tgagaacggt caagattatt cgccgccagc
    11941 gtctcatcaa cgatgtgcgc cagttccgtt accgcaacct tgaagacttc gttgcccgcc
    12001 atcgtcagat gaattgaatt ctctggattc acgcggtcgg cgtttggcag cgtcagcaat
    12061 tcaccataac taccgtcggc atgcagatgg gtggagatga ttcccggctc ttcagaggca
    12121 gccagcaccg cagcgcccgc gccatcgcca aaaataataa tagtcccacg atctgttgga
    12181 tcgcaggtgc gcgccagtac atcggaaccg acgaccagag catacttcac cgccccagat
    12241 ttcacgtatt gattggctac gcttaatgca taggtgaaac ctgcgcaggc tgctgcaacg
    12301 tcaaatgccg ggcaaccttt aatgcccaac atgctttgaa tctgacaagc tgcgctcggg
    12361 aaagcgtgcg tagcagaagt cgttgccaca acgatcaggc caatctggtc tttctcaatg
    12421 cccgccatct caattgcgcg tgtcgccgct tcaaagccca tggttgaaac ggtttcgttt
    12481 ggcgcggcaa tgtggcgttc gcggataccg gtacgagtga caatccactc gtcagaggtg
    12541 tccaccattt tttccaaatc ggcgtttgtc cgcacttgtt cgggcagata gctgccagta
    12601 ccaataatct tcgtatacat gtacgctcag tcacttttcg gttatatacc gtcacttgca
    12661 aactgcgagt tcgctggcag cgtcctgcta ccgcagagtt ccgcttttgc caccgtccag
    12721 cagctcaaaa ccagctgggt atacagattc caggcgagcg gcaattcgct gaggaacttg
    12781 tcgctgcacc gcctgcactg cctgttcaat cgcgaccgca aaagctcgct gattggctgc
    12841 accatgactt tttatcaccg tgccgcgcaa tcctaacaga caggcgccgt tatactggtc
    12901 ggggttgagg tgactgaatc gcctcgtcag gctcttttgt agccaacgct ttaataacag
    12961 tagccaccac gaccgttttt tcccttcacc ctgagatttc agcagagaaa ggaacatcct
    13021 gacaacacct tccatcgtct ttaacgtgac atttcctgta aagccgtcac aaaccagcac
    13081 atctgtcttg ccagttaaca actcattggc ttcaagatag ccgatataat tgatagaagg
    13141 gattgtttta agcaccgctg aggcatcccg aatactgtcg agacccttta cttcttcttc
    13201 accaatattg agcaacgcca cgcgaggatt gggaatttcc accacctctt cagccagaac
    13261 tgagcccata atggcaaatt gcaccaacat tgtgctgtca caatcgacgt tggcccctaa
    13321 atcgaggacc accgttttgc ccttttgctg atgtggtaat accgtcacca gcgccggacg
    13381 ctcaatcccc tccaggggcc tgagtaataa ttttgccagc cccatcagtg ccccggtatt
    13441 accggcactg acacaggctt gcgctcgacc ttctttcacc agctccaggg ccatacgcat
    13501 tgaactccca cgactagcgc ggatagcttg cgaaggccgg gcatcactgg cgataactga
    13561 ctgcgcagga ataatctgca gacgcgaacg ttgttcaaag tcagctttag caagtaatgg
    13621 cgtgatggcg tcgggattgc cgactaaaag aagagtgagt tgcgaattag aattcagtgc
    13681 ctgcaatgct gcaggcactg tcacggaagg gccaaaatcc cctcccatga catctaacgc
    13741 cagggttaga cgtgtcaagg tatcgtcgcc gcccggtttg gtctttcccc agttgcctgg
    13801 ggaaaatcct cactaagctt catcacgcag acgcgtgatt acttagcgat gaccttgcgg
    13861 ccgcggtagt aaccgtcggc agtgatatgg tgacgcaggt gtttttcacc agaagttttg
    13921 tctacagaca ggctggtgac tgcggtcagc gcgtcatggg aacgacgcat gccacgtttg
    13981 gaacgggttg gtttattctg ttgtacggcc atggacctta ctcctcaatt acggtttatc
    14041 cccgatccaa cggggagcac caattactta cgctttaagc tggctaatac ggcaaatggg
    14101 tttggctttt gcacttcttc aggcagttca ccaaagacca tgtccgcttc ggacacttca
    14161 cagtgttcag aatcatgcac cggaactacc ggcaaggcga ggatgatttc atcttcaacc
    14221 attgcaagca gatcgatttc accgaattcg ttaacctcaa tcggttcata cgcttccggc
    14281 agtgcttcag cctgttcgtc tgaacgcaca ggactaaaac aatacgttgt gtagacctga
    14341 tgagtaaacg gcttcccgca acgctgacac tcgagcgtta ccgtcacctt cgcatcgccg
    14401 tttaacactg cgagacgttg gttatcgata gcgaacgaca tggagcattc cacatcactg
    14461 tccacactga ctacggattc ggcgacgcgc tcaacctgat caggggtata gataccctgg
    14521 taatcaaggc gtttttgagc cgtacgaacc ggatcgagag tcaggggtaa ttttaccttt
    14581 tgcatagggc gcgcatatta actttgtaac gtcatagagt caaagaaaaa ggcagcctgt
    14641 ggttgccttt tgccaataat tcgcacacat tgcgggttac tgctttattt tcgttcagtg
    14701 ctgataacga acatcaacct gcaaaacgaa gcgcatagtt taaaatggct atcatcaata
    14761 cgctatatct gatggaaaaa aatatgccta aacttatttt agcctccacc tcgccatggc
    14821 gtcgcgctct tctggaaaaa ctgcaaatct cttttgaatg tgcagcacca gaggtcgacg
    14881 aaaccccacg cagcgacgaa tcaccgcgac agttggtgct tcgactggca caagaaaaag
    14941 cgcaatctct ggcgtcacgt tatccggatc atttaattat tggttcagac caggtatgtg
    15001 ttcttgatgg cgaaatcacc ggtaaaccgt taacggaaga aaatgcccgt ctgcaattac
    15061 gcaaagccag cggcaatatc gtcaccttct atactggact ggcgttgttt aattcggcga
    15121 atgggcatct acaaacagaa gtggagcctt ttgacgtcca tttccgtcac ctgtgcgagg
    15181 cggagattga taattacgtg cgtaaggagc atcccctgca ctgcgcgggt agctttaaga
    15241 gtgaaggatt tggcattacg ctgtttgagc gtttagaggg acgtgaccct aacacgctgg
    15301 ttggtttacc gctaatcgcg ctgtgtcaga tgttacgtcg ggaagggaaa aacccgctga
    15361 tgggatagtt gtttgcgccg gatgcggtta cgtcgcatcc ggcaatcggt gcaggcggcc
    15421 tgatgcggcg taaacgcctt atcaggccaa ccgcccatta tcaggcttat atgcttgtat
    15481 tagcgcgcgt tacgcagctt ttgcaaacaa cgcttcaaac cttcatccat cggcgcttcg
    15541 atacgcatca cctcaccggt ccccggatgg gtaaacttca acgctgcggc gtgcaggaac
    15601 agacgattta atcccgtgcc tgcttcagtg agctgtctgt caaattcacg gtcaccgtag
    15661 cgatcgtcaa aggcaatcgg atgacccgca tactgtgtat gcacacggat ctgatgagta
    15721 cgtccggtta ccgggctaca acgcaccagg gtggcaaatg catagcgttc ttccacttta
    15781 aagcgtgttt ccgacggttt gccttcctga ctgacacgca cgatacgttc gccgctttgc
    15841 agaatatttt tcaataacgg cgcttgaacg ctcttcacat gcgactgcca ctgactgcgc
    15901 accagcgcca ggtaatcttt ttgcattcct ttttcacgta attgctcatg cagagaacgc
    15961 aacgccgagc gttttttcgc taccagcaac acacctgaag tgtcccggtc gagacgatga
    16021 accagttcaa ggaaccgcgc ttccgggcgc aacgcccgca aaccttcgat aacgccgaag
    16081 cttaaaccac tgccgccatg taccgccgta ccggaaggtt tattcagcac caggatatga
    16141 tcatcttcat ataagatgac gtccgccagc gccgccacct tttgcagatg tggcgaaacc
    16201 gcctcttctt cccgctcagc aacgcgaacc ggtgggatac gcacctcatc acccgcttcg
    16261 agtttatatt caggcttaat acgttttttg ttcacccgca cttcgccttt acgcaaaata
    16321 cggtaaatca tactttttgg tacgcctttc aattgggtac gcaaaaagtt gtcgatacgt
    16381 tgccccgctt cgtcagcggt gatagcaaca atttttacgg atggagtctc tgttttcatg
    16441 gtgggcgatt ctaattagcc aacaggattc gcgccactca tttttctatg cttatattta
    16501 gttttacacc ttattacttc actacgtgat cactttattg atggttatta aaccaatcac
    16561 cagcaagaag tgaaaaatgt aatgaacgca tcccacacaa ttaaacacgg agcagtatga
    16621 tggttaaaag ggtgaaactg gcaggtgtgg agcctcgcag atttccggca tcatagtgcc
    16681 caatacggga tgcataaagc tccctcagac tggagactcc acaaatgaaa tatacaccgg
    16741 ttggcgttgg tatcgcaaaa catgtcattc agattcactt catcaatgag cacacag
//
LOCUS       DADMJB010000090        16626 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.090, whole genome shotgun sequence.
ACCESSION   DADMJB010000090 DADMJB010000000
VERSION     DADMJB010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16626)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16626)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16626
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.090"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(385..1485)
                     /gene="chaA"
                     /locus_tag="JN078_002531"
     CDS             complement(385..1485)
                     /gene="chaA"
                     /locus_tag="JN078_002531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-potassium/proton antiporter ChaA"
                     /protein_id="HAY9041695.1"
                     /translation="MSNAQEAVKTRHKEISLIFPVLALVVLFLWGSSQTLPVVIAINL
                     LALIGILSSAFSVVRHADVLAHRLGEPYGSLILSLSVVILEVSLISALMATGDAAPTL
                     MRDTLYSIIMIVTGGLVGFSLLLGGRKFATQYMNLFGIKQYLIALFPLAIIVLVFPMA
                     LPAANFSTGQALLVALISAAMYGVFLLIQTKTHQSLFVYEHEDDSDDDDPHHGKPSAH
                     SSVWHAIWLIIHLIAVIAVTKMNASPLETLLDSMNAPVAFTGFLVALLILSPEGLGAL
                     KAVLNNQVQRAMNLFFGSVLATISLTVPVVTLIAFMTGNELQFALGAPEMVVMVASLV
                     LCHISFSTGRTNVLNGAAHLALFAAYLMTIFA"
     gene            1755..1985
                     /gene="chaB"
                     /locus_tag="JN078_002532"
     CDS             1755..1985
                     /gene="chaB"
                     /locus_tag="JN078_002532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative cation transport regulator ChaB"
                     /protein_id="HAY9041696.1"
                     /translation="MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKDDRRD
                     DASREETAHKVAWAAVKHEYAKGDDDKWHKKS"
     gene            2143..2838
                     /locus_tag="JN078_002533"
     CDS             2143..2838
                     /locus_tag="JN078_002533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415736.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase"
                     /protein_id="HAY9041697.1"
                     /translation="MITRDFLMNADCKTAFGAIEESLLWSAEQRAASLAATLACRPDE
                     GPVWIFGYGSLMWNPALEFTESCTGTLVGWHRAFCLRLTAGRGTAHQPGRMLALKEGG
                     RTTGVAYRLPEETLEQELTLLWKREMITGCYLPTWCQLDLDDGCTVNAIVFIMDPRHP
                     EYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKLGMQDDGLNDLLVSVKKLLA
                     ENYPDGVLRPGFA"
     gene            complement(2882..3235)
                     /gene="ychN"
                     /locus_tag="JN078_002534"
     CDS             complement(2882..3235)
                     /gene="ychN"
                     /locus_tag="JN078_002534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE/F sulfur relay family protein YchN"
                     /protein_id="HAY9041698.1"
                     /translation="MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSD
                     AVTAGLRGQKPGEGYNIQQMLEILTAQNVPVKLCKTCTDGRGISTLPLIDGVEIGTLV
                     ELAQWTLSADKVLTF"
     gene            3419..4813
                     /gene="ychO"
                     /locus_tag="JN078_002535"
     CDS             3419..4813
                     /gene="ychO"
                     /locus_tag="JN078_002535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415738.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter invasin YchO"
                     /protein_id="HAY9041699.1"
                     /translation="MSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLP
                     DLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHV
                     ESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYFTWSQLGLTQQDNGLVSNV
                     GVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLLANFYQPFAAWHEQT
                     ATQEQRMARGYDLTARMRMPFYQHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGL
                     NYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRY
                     DNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQ
                     ILSLTPGAQANSAEGWTLIMPDWQNGEGASNHWRLSVVVEYNQGQRVSSNEITLTLVE
                     PFDALSNDELRWEP"
     gene            complement(4814..5464)
                     /gene="narL"
                     /locus_tag="JN078_002536"
     CDS             complement(4814..5464)
                     /gene="narL"
                     /locus_tag="JN078_002536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator NarL"
                     /protein_id="HAY9041700.1"
                     /translation="MSNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQG
                     IELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRG
                     ADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRE
                     RDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF"
     gene            complement(5457..7253)
                     /gene="narX"
                     /locus_tag="JN078_002537"
     CDS             complement(5457..7253)
                     /gene="narX"
                     /locus_tag="JN078_002537"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarX"
                     /protein_id="HAY9041701.1"
                     /translation="MLKRCLSPLTLVNQVALIVLLSTAIGLAGMAVSGWLVQGVQGSA
                     HAINKAGSLRMQSYRLLAAVPLSEKDKPLIKEMEQTAFSAELTRAAERDEQLAQLQGL
                     QDYWRNELIPALMRAQNRETVSADVSQFVAGLDQLVSGFDRTTEMRIETVVLVHRVMA
                     VFMALLLVFTIIWLRARLLQPWRQLLAMASAVSHRDFTQRANISGRNEMAMLGTALNN
                     MSAELAESYAVLEQRVQEKTAGLEHKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQ
                     NLTLLRDIELRVYDTDDEENHQEFTCQPDMTCDDKGCQLCPRGVLPVGDRGTTLKWRL
                     ADSHTQYGILLATLPQGRHLSHDQQQLVDTLVEQLTATLALDRHQERQQQLIVMEERA
                     TIARELHDSIAQSLSCMKMQVSCLQMQGDALPASSRELLSQIRNELNASWAQLRELLT
                     TFRLQLTEPGLRPALEASCEEYSAKFGFPVKLDYQLPPRLVPSHQAIHLLQIAREALS
                     NALKHSQASEVVVTVAQNDNQVKLTVQDNGCGVPENAIRSNHYGMIIMRDRAQSLRGD
                     CRVRRRESGGTEVVVTFIPEKTFTDVQGDTHE"
     gene            7592..8983
                     /gene="narK"
                     /locus_tag="JN078_002538"
     CDS             7592..8983
                     /gene="narK"
                     /locus_tag="JN078_002538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate transporter NarK"
                     /protein_id="HAY9041702.1"
                     /translation="MSHSSAPERATGAVITDWRPEDPAFWQQRGQRIASRNLWISVPC
                     LLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPIFGGR
                     RWTAFSTGILIIPCVWLGFAVQDTSTPYSVFIIISLLCGFAGANFASSMANISFFFPK
                     QKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAVFGSQGVKQPDGTELYLANASWI
                     WVPFLAIFTIAAWFGMNDLATSKASIKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAG
                     FAMLSKTQFPDVQILQYAFFGPFIGALARSAGGALSDRLGGTRVTLVNFILMAIFSGL
                     LFLTLPTDGQGGSFMAFFAVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSD
                     ERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACV
                     VITWAVYGRHSKK"
     gene            9499..13221
                     /locus_tag="JN078_002539"
     CDS             9499..13221
                     /locus_tag="JN078_002539"
                     /EC_number="1.7.99.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit alpha"
                     /protein_id="HAY9041703.1"
                     /translation="MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDK
                     IVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWY
                     LYSANRLKYPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVR
                     SSWQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFY
                     DWYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGT
                     KTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRY
                     TDMPMLVMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIG
                     FRWGEKGKWNLEQRDGKTGEETELQLSLLGSQDEIAEVGFPYFGGDGTEHFNKVELEN
                     VLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDDVKAYTPAWA
                     EQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCG
                     CVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETV
                     TAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAPQLGTNPLTIAGEAEKAGMNPVD
                     YTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQ
                     GKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDM
                     NTSDMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEVCVGHLGKETDIVTLPIQHD
                     SAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERAYPATYERFTSIGPLMEKIGNGG
                     KGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAW
                     AALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNV
                     HELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKEVIGQKSNGNPEKALN
                     FLTPHQKWGIHSTYSDNQLMLTLGRGGPVVWLSEADAKELGIADNDWIEVYNSNGALT
                     ARAVVSQRVPAGMTMMYHAQERIVNLPGSEITGQRGGIHNSVTRITPKPTHMIGGYAH
                     LAYGFNYYGTVGSNRDEFVVVRKMKNIDWLDGEGND"
     gene            13239..14777
                     /gene="narH"
                     /locus_tag="JN078_002540"
     CDS             13239..14777
                     /gene="narH"
                     /locus_tag="JN078_002540"
                     /EC_number="1.7.99.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit beta"
                     /protein_id="HAY9041704.1"
                     /translation="MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGVEYAWFNNV
                     ETKPGQGFPTDWENQEKYKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYE
                     PFDFDYQNLHTAPEGSKSQPIARPRSLITGERMAKIEKGPNWEDDLGGEFDKLAKDKN
                     FDNIQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCR
                     GWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYD
                     ADAIERAASTENEKDLYQRQLEVFLDPNDPKVIEQAIKDGIPLSVIEAAQQSPVYKMA
                     MEWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLAN
                     LLTAGDTKPVLRALKRMLAMRHYKRAETVDGKVDTRALEEVGLTEAQAQEMYRYLAIA
                     NYEDRFVVPSSHRELAREAFPEKNGCGFTFGDGCHGSDTKFNLFNSRRIDAIDVTSKT
                     EPHP"
     gene            14774..15484
                     /gene="narJ"
                     /locus_tag="JN078_002541"
     CDS             14774..15484
                     /gene="narJ"
                     /locus_tag="JN078_002541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase molybdenum cofactor assembly
                     chaperone"
                     /protein_id="HAY9041705.1"
                     /translation="MIELVIVSRLLEYPDAALWQHQQEMFEVIAASKNLSKEDAHALG
                     IFLRDLTAMDPLDAQAQYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLLAQYEQHG
                     LQLNSRELPDHLPLYLEYLSQLPQSEAVEGLKDIAPILALLSARLQQRESRYAVMFDL
                     LLKLANTAIDSDKVAEKIADEARDDTPQALDAVWEEEQVKFFADKGCGDSAITAHQRR
                     FAGAVAPQYLNITTGGQH"
     gene            15484..16161
                     /gene="narI"
                     /locus_tag="JN078_002542"
     CDS             15484..16161
                     /gene="narI"
                     /locus_tag="JN078_002542"
                     /EC_number="1.7.99.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="respiratory nitrate reductase subunit gamma"
                     /protein_id="HAY9041706.1"
                     /translation="MQFLNMFFFDIYPYIAGAVFLIGSWLRYDYGQYTWRAASSQMLD
                     RKGMNLASNLFHIGILGIFAGHFFGMLTPHWMYEAWLPIEVKQKMAMFAGGASGVLCL
                     IGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLV
                     GWAQSVVTFHGGASQHLDGVAFIFRLHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRKY
                     QLVRARH"
     gene            complement(16344..16475)
                     /locus_tag="JN078_002543"
     ncRNA           complement(16344..16475)
                     /ncRNA_class="other"
                     /locus_tag="JN078_002543"
                     /product="RtT sRNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00391"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="rtT sRNA, processed from tyrT transcript; Derived
                     by automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00391"
     gene            complement(16523..16607)
                     /locus_tag="JN078_002544"
     tRNA            complement(16523..16607)
                     /locus_tag="JN078_002544"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(16571..16573),aa:Tyr,seq:gta)
BASE COUNT         3982 a         4161 c         4457 g         4026 t
ORIGIN      
        1 acaacatttt gcggctattc ttgaagtgtc tggtttcaag attagccccc gttttgttgt
       61 caggttttac ctctcaacgt gcgggggttt tctctttcca gcaaccaatg ccaccaggga
      121 taaagccccc gcaacattgc gcctcaccgg ataattccgg cttggtgtgg atactacgtc
      181 tcaattcatc ttcacttcat ccctgaaatg tttgcaataa agagtacatt ccggcttttc
      241 aacagctgtt gcagtggttt cgtgcaggtt gtggtacagg ctcgcaattc tgattaacga
      301 gctgtccagg tagtatgaag aaatacaata agcaggaatt tatcttatct cccccgattt
      361 ccgtcatcgg aggagatata actgtcaggc aaatatcgtc atcaaatagg cggcaaacag
      421 tgccagatgc gctgcgccat tgagcacgtt agtacgtccg gtggagaagg agatatggca
      481 cagcactaaa gaggccacca tcaccaccat ttctggcgca ccaagtgcaa actgtaattc
      541 gttacccgtc ataaaggcaa ttagcgtgac gacaggtacg gtaagtgaaa tggttgctaa
      601 cactgaacca aagaacagat tcatcgcgcg ctggacctgg ttgttcaaca ctgcttttaa
      661 cgcacctaaa ccttccggcg acagaatcaa cagagccacc aggaagccag taaaggcgac
      721 aggggcattc atgctgtcga gcaatgtctc cagcgggctg gcattcattt tggtgactgc
      781 aataacggca atcagatgga taatcaacca gatagcatgc cacacgctgc tatgggcaga
      841 cggtttaccg tgatgcgggt cgtcgtcatc actgtcatct tcgtgctcgt agacaaacaa
      901 actttgatgc gttttggtct ggatcagcaa aaatacgcca tacattgccg cagaaattaa
      961 tgctaccagt aacgcctgac cggttgaaaa attcgccgca ggcagagcca ttggaaatac
     1021 cagtacgatt atcgccaggg ggaacagcgc aattaaatac tgcttgatac caaacagatt
     1081 catatattgg gtggcaaact tacgaccgcc caacaataat gaaaagccaa ccagcccacc
     1141 ggtaacaatc ataatgattg aatagagcgt atcacgcatt agcgttggcg cggcgtcgcc
     1201 ggttgccatt aaagctgaaa tcaaactgac ttcaagaata accactgaaa ggctaagaat
     1261 aagcgaaccg taaggttctc ccaagcgatg ggctaatacg tccgcatgac ggacaacact
     1321 aaaggcgcta cttaaaatac caataagcgc aagaagattg atggcaatga ccactggtag
     1381 tgtctggctg cttccccaca ggaacagcac taccagcgcc agaaccggga aaataagcga
     1441 aatctccttg tggcgggttt ttaccgcctc ttgagcattt gacattatgg ttatcccttt
     1501 gcagatgaat ttatcgaaaa tgtaaaaaat aggtaggaaa aataacagaa agtgtctgga
     1561 tatcggtaac attttacgaa tttttacccc actgtcgatt ttttactcat tgggacataa
     1621 aaataagtat tacgtttaga caatgtttgt tttagcgttt cttaagaaca gtctgacatg
     1681 aaaattctta tgttttggca agagtagata ttgttgacca cacttaatgt tcaactttgt
     1741 aaaaggagtc aacgatgccg tataaaacga aaagcgatct gccggaaagc gtaaagcacg
     1801 ttctaccgtc tcatgcccag gatatctata aagaagcgtt caacagcgca tgggatcaat
     1861 ataaagataa agacgatcgg cgtgatgacg ccagtcgcga agaaaccgcg cataaagtgg
     1921 cctgggctgc tgtgaagcat gaatatgcca aaggggatga tgataaatgg cataaaaaat
     1981 cgtaaaaccg gtagcttagt taaagctatt cgtgcggtgt tgccttgcaa gtggtccgtg
     2041 gattgcatat tgtcccgtta gtggtttcaa aatgagcagt aaaaatgtcc ggaagacacc
     2101 aaaaagttgt cgcagggaag tatgcagtgg cggaggtgta aggtgataac gcgtgatttc
     2161 ttgatgaatg ccgattgtaa aacggcattt ggtgccattg aagaatcact cttatggtca
     2221 gcagagcaac gagcggcttc gctggcggcg acgctggctt gtcgacctga tgagggaccg
     2281 gtgtggatct tcggttatgg atcgttgatg tggaatccgg cactggagtt taccgagtcg
     2341 tgcaccggta cactggttgg atggcatcgc gcgttttgcc tgcgcctgac cgccgggcgc
     2401 gggactgcgc accagccggg acggatgctt gcactgaaag agggcggacg cactacaggc
     2461 gtcgcctatc gactgccaga agagacgctg gagcaggaac taaccctgtt gtggaagcgc
     2521 gagatgatta ccggctgtta tctgccaacc tggtgtcagc ttgatcttga tgatggatgc
     2581 acagtaaacg ccattgtgtt tattatggac ccgcgacatc cagaatatga atctgacact
     2641 cgcgctcagg tcatcgcgcc gttgattgcg gcggcgagcg gtccgctggg aaccaacgca
     2701 caatacctgt tttcactgga acaggagctt atcaaactgg gaatgcagga cgatgggctg
     2761 aatgatttgc tggtatcggt aaaaaaactg ctggcggaga attatccgga tggtgtgtta
     2821 cggccgggat tcgcctgagt aaacttcccg catagtgggg cgtcagacgc cccctcaaac
     2881 attaaaatgt gagcacttta tcggctgaca gcgtccattg cgccagttcc acaagagtac
     2941 cgatttccac cccatcaatc agaggaagtg tactaatccc gcgcccgtcg gtacaggttt
     3001 tgcacaattt caccggtaca ttctgagcgg taaggatctc cagcatttgc tgaatgttgt
     3061 agccttcccc tggtttttgc ccgcgcaacc cggctgtgac cgcatcagac atgaggaaca
     3121 gacgcagatc cagattgctc tcctgctctc gtaacgcaat ggccagccgc aagctgttaa
     3181 acaaggattc gctcccgtaa ggtgcgccat tggcaacgat cacgattttt tgcattattt
     3241 actcctgtat tcagggaatt agacactcat cttctatctt actgcttctg cagcgtctga
     3301 ccaatcggtc acatttttaa ggattttcct gaaagcgcga gaaaatacga caaaagttgc
     3361 cagtaatcgt tattctttaa ggctatggtt ttcattatta ccggaagtta ccgacgtttt
     3421 gagccgtttc gttcctcgca ttatcccgtt ttatttactc ttgcttgtag caggcggtac
     3481 agctaacgca caatctacct tcgagcaaaa agcggcaaat ccctttgata ataacaatga
     3541 tggtctgccg gatttaggca tggctcccga aaatcatgat ggggaaaaac actttgctga
     3601 aattgtgaaa gatttcggcg aaaccagtat gaatgataac gggctggata ctggcgagca
     3661 ggcaaaagct ttcgcattgg gaaaagtccg cgacgcgctt agtcaacagg ttaatcagca
     3721 cgtagagtcc tggctatcac cgtggggaaa tgccagtgtt gacgtcaaag tggataacga
     3781 aggacatttc accggcagtc gtggaagctg gtttgtgccg ttacaagata atgatcgtta
     3841 tttcacctgg agccagcttg gtcttactca gcaggataat gggttggtga gcaatgtggg
     3901 cgttgggcaa cgctgggcgc gcggcaactg gctggtgggt tataacactt tttatgacaa
     3961 cttgctggac gaaaatcttc agcgagcggg ctttggtgcc gaagcgtggg gcgaatattt
     4021 gcgattattg gcaaactttt atcagccgtt tgctgcatgg catgaacaga cagccacgca
     4081 ggaacaacgg atggcgcgcg ggtacgacct gacagctcgg atgcgcatgc cgttctatca
     4141 acacctcaat accagtgtca gcctagaaca gtattttggt gatcgtgttg atttgtttaa
     4201 ctctggtacg ggttatcaca atcccgtcgc gttgagtctg ggattaaatt acacccctgt
     4261 gccattagtc actgtgacgg cccagcataa acagggtgaa agtggcgaga atcaaaataa
     4321 cctcgggctg aatcttaatt accgctttgg tgtaccgctc aaaaaacaac tttctgcggg
     4381 cgaggttgcc gaaagtcagt cgttacgtgg tagtcgctat gacaatccgc agcgaaataa
     4441 tctaccgact cttgagtacc gacagcgaaa aacgttaacg gtgtttctgg cgacaccgcc
     4501 gtgggatcta aaacctggcg aaacagtgcc gctgaaatta caaatccgca gtcgttacgg
     4561 tattcggcaa ctgatttggc agggcgatac gcagatatta agtttgacgc cgggcgcaca
     4621 agccaacagc gcggagggct ggacgctgat catgcctgac tggcagaacg gggaaggggc
     4681 aagcaatcac tggcgattgt cggtggtggt ggaatataac caggggcagc gtgtctcctc
     4741 caatgagatc acgctaacgc ttgtcgaacc gttcgatgca ttgtcaaacg acgaactgcg
     4801 ctgggaaccg taatcagaaa atgcgctcct gatgcaccca taccgctgct tccacgcgag
     4861 acttgagctt cattttcttc agcatgtgct tgacgtgcac ttttactgtg ctttcggtga
     4921 tatccaggcg gcgggcaatc atcttgttcg gcaaaccctg ggcaatcagc ttgagaatat
     4981 cgcgctcgcg tggggttaac tggttaacat cgcgctcagt agtggcacgg ttagcgcgca
     5041 agctggcggc cagaacaggc gttaatgctt cgcttaatac catttcgcca gcagctgcct
     5101 gatgcaatgc tttcagcaga tcttccggtt ccatatcttt taacagataa ccatccgcgc
     5161 cgcgtttcag tgcggtgacc acatcttctt catggttaga gacgctgaat accacaatgc
     5221 gccctgagag ggacttttcg cgcagtttat ccagcgtttc cagaccgttc atgccgggca
     5281 tattgagatc taacaggatc agatcgggat caagagactc cgccagttca ataccctgtt
     5341 cgccattact cgcttcgcca accacggtga tatctggtgc catactgata agctgtttta
     5401 cgccagttcg cagcatcggg tgatcgtcga tcagcaggat agtagccggt tcctgattac
     5461 tcatgggtat ctccttggac gtctgtgaaa gttttttcgg gaataaaggt gaccaccact
     5521 tcggtgccac ctgattcacg acggcggacg cggcaatcgc ctcgtaaact ttgcgcacgg
     5581 tcgcgcatta ttatcatgcc gtagtgattg ctgcggatgg cattttcagg cacgccgcag
     5641 ccgttatctt ggacggtcag tttgacctga ttatcgtttt gcgccaccgt caccacgacc
     5701 tcactcgctt gcgaatgttt gagggcgtta cttaatgcct cacgggcaat ttgcaacaag
     5761 tggattgcct gatgtgaagg caccagacga ggcggcaatt gataatccag cttcaccggg
     5821 aagccaaatt tggcgctgta ctcttcgcaa ctcgcctcca gcgccggacg taatccaggc
     5881 tcggtgagct gcaagcggaa tgtggtgagc aattcacgca actgcgccca ggatgcattc
     5941 agttcgttac ggatctgact taacagttcg cggctgcttg ctggcagcgc atcgccctgc
     6001 atctgtaaac aactcacctg catcttcatg caagagagag attgggcaat agaatcatgc
     6061 agttcgcgcg caatggtggc acgctcttcc atcacgatca actgttgctg acgttcctga
     6121 tggcgatcca gcgccagcgt ggcggtgagt tgttcaacca gggtatccac cagttgttgt
     6181 tgatcatggc taagatgacg cccctgcggc agggtcgcca gcaaaatacc gtactgcgta
     6241 tgagagtcag ccagccgcca cttcagggtt gtgccgcgat caccaacggg taatacgccg
     6301 cgcgggcaga gctggcagcc tttatcatca caagtcatat ctggctggca ggtaaactcc
     6361 tgatgattct cttcatcatc agtgtcatac acccgcagtt cgatatcacg tagcagggtt
     6421 aaattctgta agccgttgag tacaggtgac aggcgttcac acagcggggc gcgggaatgc
     6481 aaacggcggt tagcctgcca taaaaaagag aggatctgat ttttatgctc cagcccggcg
     6541 gttttctcct gaacccgctg ctcaagtacg gcataacttt cggccagttc tgcagacata
     6601 ttgttcaatg cagttccaag catcgccatt tcgttgcgcc cgctgatgtt cgcgcgttgg
     6661 gtaaaatcgc gatgactgac ggcactcgcc attgccagca gttgccgcca cggttgtagc
     6721 agtcgcgccc gcaaccagat aatagtgaac accagtaaaa gtgccataaa taccgccatt
     6781 acccgatgga ccagtaccac tgtctcaatg cgcatttccg tggtgcggtc aaaaccagat
     6841 accagctgat caagcccggc aacaaactgg ctgacatccg ctgacaccgt ttcgcggttt
     6901 tgtgcacgca tcagtgcagg gatcagttca ttacgccagt aatcttgtaa accctgtaat
     6961 tgcgccagtt gttcgtctcg ttctgctgct cgagttaact cggcgctaaa tgccgtttgt
     7021 tccatctctt taattaaggg cttgtctttc tcacttaatg gcactgccgc caacagacgg
     7081 taactttgca tgcgcagcga tcccgctttg ttgatcgcat gggcgctgcc ctgaacgcct
     7141 tgcaccagcc agccagaaac cgccatccct gccagtccaa tagcagtaga aagcaacaca
     7201 ataagcgcaa cctgattaac cagggtgagc ggagagagac aacgtttaag catgtaaacc
     7261 tcttccttca ggctttaaat gagcaataac cttaatgaat gtgacgatac attctggaat
     7321 ggcagtattc tcggctattg gctgaagtat acccataccc ggaaagagtt actccttatt
     7381 tgccgtgtgg ttagtcgctt tacatcggta agggtaggga ttttacagca ccgtgaaaaa
     7441 tctcataatt tttatgaaat cactgtactc actatgggta ttgataaata tcaatgatag
     7501 ataaagttat cttatcgttt gatttacatc aaattgcctt tagctacaga cactaaggtg
     7561 gcagacatcg aaacgagtat cagaggtgtc tatgagtcac tcatccgccc ccgaaagggc
     7621 tactggagct gtcattacag attggcgacc ggaagatcct gcgttctggc aacaacgcgg
     7681 tcaacgtatt gccagccgta acctgtggat ttccgttccc tgtctgctgc tggcgttttg
     7741 cgtatggatg ttgttcagcg ctgttgcggt gaacttaccg aaagtcggtt ttaattttac
     7801 gaccgatcag ctatttatgt tgactgcgct gccttcggtt tctggcgcgt tattacgtgt
     7861 tccatactcc tttatggttc ctatcttcgg tggtcgtcgc tggacggcgt tcagcaccgg
     7921 tattctgatt attccttgcg tctggctggg ttttgccgtg caggatacct ccacgcctta
     7981 tagcgtcttc atcatcatct ctctgctatg cggctttgct ggcgcgaact tcgcatccag
     8041 tatggcaaac atcagcttct tctttccgaa acagaagcag ggtggcgcgc tgggtctgaa
     8101 tggtggtctg ggaaacatgg gcgtcagcgt catgcagttg gttgctccgc tggtggtatc
     8161 actgtcgatt ttcgcagtat ttggtagcca gggcgtcaaa cagccggatg ggactgagct
     8221 gtatctggcg aatgcgtcct ggatatgggt gccgttcctt gccatcttca ccattgcggc
     8281 gtggtttggc atgaacgatc ttgctacctc gaaagcctcc atcaaggagc agttgccggt
     8341 actcaaacgg ggtcatctgt ggattatgag cctgctgtat ctggcaacct tcggctcctt
     8401 catcggcttc tccgcgggct ttgcaatgct gtcaaaaacg cagttcccgg atgttcagat
     8461 tctgcaatac gctttcttcg ggccgtttat tggtgcgctg gcgcgttctg caggtggtgc
     8521 attatctgac cgtctgggcg gaactcgtgt cacgctggtg aactttattc tgatggcgat
     8581 tttcagcggc ctgctgttcc tgaccttacc gactgacggg cagggcggaa gcttcatggc
     8641 gttcttcgcg gtcttcctgg cgctgttcct gacagctggg ctgggtagtg gttccacttt
     8701 ccagatgatt tcagtgatct tccgtaaact gacaatggat cgcgtgaaag cagaaggggg
     8761 ttctgacgaa cgtgcgatgc gtgaagcggc aaccgacacg gcggcggcgc tgggtttcat
     8821 ctctgcgatt ggcgcgattg gtggcttctt tatcccgaaa gcgtttggta gctcgctggc
     8881 attaacgggt tcgccagtcg gcgcaatgaa ggtatttttg attttctata tcgcctgcgt
     8941 agtgattacc tgggcggtat atggtcggca ttctaaaaaa taaaccgtta ctcgtcatac
     9001 tccgggttac atgtgctgcg gctgcgttca ttcaccccag tcacttactt tagtaagctc
     9061 ctgggattca ttcacttgcc gccttcctgt aaaccgaatt atatagagta aaatatttga
     9121 ttatcctttg cgcggcatga tgtcgcgctt tttttaagcg ttatttagtt acaacatact
     9181 aatgttatat ggtttatttc gccggatttc attaagagcc attaatatgt tccccatggg
     9241 gaatactcct taatacccat ctgcataaaa atcttaatag tttaaataac tacaggtata
     9301 aaacgtctta atttacagtc tgttatgtgg tggctgttga ttatcctaaa ggggtatctt
     9361 aggaatttac tttatttttc atccccatca ctcttgatcg ttatcaattc ccacgctgtt
     9421 tcagagcgtt accttgccct taaacattag caatgtcgat ttatcagagg gccgacaggc
     9481 tcccacagga gaaaaccgat gagtaaattc ctggaccggt ttcgctactt caaacagaag
     9541 ggtgaaacct ttgccgatgg gcatggccag cttctcaata ccaaccgtga ctgggaggat
     9601 ggatatcgcc agcgttggca gcatgacaaa atcgtccgct ctacccacgg ggtaaactgc
     9661 accggctcct gcagctggaa aatctacgtc aaaaacggtc tggtcacctg ggaaacccag
     9721 cagactgact atccgcgtac ccgtccggat ctgccaaacc atgaacctcg cggctgcccg
     9781 cgcggtgcca gctactcctg gtatctttac agtgccaacc gcctgaaata cccgatgatg
     9841 cgcaaacgcc tgatgaaaat gtggcgtgaa gcgaaggcgc tgcatagcga tccggttgag
     9901 gcatgggctt ctatcattga agacgccgat aaagcgaaaa gctttaagca ggcgcgtgga
     9961 cgcggtggat ttgttcgttc ttcctggcag gaggtgaacg aactgatcgc cgcatctaac
    10021 gtttacacca tcaaaaacta cggcccggac cgtgttgctg gtttctcgcc aattccggca
    10081 atgtcgatgg tttcttacgc atcgggtgca cgctatctct cgctgattgg cggtacttgc
    10141 ttaagcttct acgactggta ctgcgacctg cctcctgcgt ctccgcaaac ctggggcgag
    10201 caaactgacg taccggaatc tgctgactgg tataactcca gctacatcat cgcctggggt
    10261 tcaaacgtgc cgcagacgcg taccccggat gctcacttct ttactgaagt gcgttacaaa
    10321 ggcaccaaaa ctgttgccgt cacaccagac tacgctgaaa tcgccaaact gtgcgatctg
    10381 tggctggcac cgaaacaggg caccgatgcg gcaatggcgc tggcgatggg ccacgtaatg
    10441 ctgcgtgaat tccacctcga caacccaagc cagtatttca ccgactatgt gcgtcgctac
    10501 accgacatgc cgatgctggt gatgctggaa gaacgcgacg gttactacgc tgcaggtcgt
    10561 atgctgcgcg ctgctgatct ggttgatgcg ctgggccagg aaaacaatcc ggaatggaaa
    10621 actgtcgcct ttaataccaa tggcgaaatg gttgcgccga acggttctat tggcttccgc
    10681 tggggcgaga agggcaaatg gaatcttgag cagcgcgacg gcaaaactgg cgaagaaacc
    10741 gagctgcaac tgagcctgct gggtagccaa gatgagatcg ctgaggtagg cttcccgtac
    10801 tttggtggcg acggcacgga acacttcaac aaagtggaac tggaaaacgt gctgctgcac
    10861 aaactgccgg tgaaacgcct gcaactggct gatggcagca ccgccctggt gaccaccgtt
    10921 tatgatctga cgctggcaaa ctacggtctg gaacgtggcc tgaacgacgt taactgtgca
    10981 accagctatg acgatgtgaa agcttatacc ccggcctggg ccgagcagat taccggcgtt
    11041 tctcgcagcc agattattcg catcgcccgt gaatttgccg ataacgctga taaaacgcac
    11101 ggtcgttcga tgattatcgt cggtgcgggg ctgaaccact ggtatcacct cgatatgaac
    11161 tatcgtggtc tgatcaacat gctgattttc tgcggctgtg tcggtcagag cgggggcggc
    11221 tgggcgcact atgtaggtca ggaaaaactg cgtccgcaaa ccggctggca gccgctggcg
    11281 tttgcccttg actggcagcg tccggcgcgt cacatgaaca gcacttctta tttctataac
    11341 cactccagcc agtggcgtta tgaaaccgtc acggcggaag agttgctgtc accgatggcg
    11401 gacaaatccc gctataccgg acacttgatc gactttaacg tccgtgcgga acgcatgggc
    11461 tggctgccgt ctgcaccgca gttaggcact aacccgctga ctatcgctgg cgaagcggaa
    11521 aaagccggga tgaatccggt ggactatacg gtgaaatccc tgaaagaggg ttccatccgt
    11581 tttgcggcag aacaaccaga aaacggtaaa aaccacccgc gcaacctgtt catctggcgt
    11641 tctaacctgc tcggttcttc cggtaaaggt catgagttta tgctcaagta cctgctgggg
    11701 acggagcacg gtatccaggg taaagatctg gggcaacagg gcggcgtgaa gccggaagaa
    11761 gtggactggc aggacaatgg tctggaaggc aagctggatc tggtggttac gctggacttc
    11821 cgtctgtcga gcacctgtct ctattccgac atcattttgc cgacggcgac ctggtacgaa
    11881 aaagacgaca tgaatacttc ggatatgcat ccgtttattc acccgctgtc tgcggcggtc
    11941 gatccggcct gggaagcgaa aagcgactgg gaaatctaca aagccatcgc gaagaaattc
    12001 tccgaagtgt gcgtcggcca tctgggtaaa gaaaccgaca tcgtcacgct gcctatccag
    12061 catgactctg ccgctgaact ggcgcagccg ctggatgtga aagactggaa aaaaggcgag
    12121 tgcgacctga tcccaggtaa aaccgcgcca cacattatgg tcgtagagcg cgcttatccg
    12181 gcgacttacg aacgctttac ctctatcggc ccgctgatgg agaaaatcgg taatggcggt
    12241 aaagggattg cctggaacac ccagagcgag atggatctgc tgcgtaagct caactacacc
    12301 aaagcggaag gtccggcgaa aggccagccg atgctgaaca ccgcaattga tgcggcagag
    12361 atgatcctga cactggcacc ggaaaccaac ggtcaggtag ccgtgaaagc ctgggctgcc
    12421 ctgagcgaat ttaccggtcg tgaccatacg catctggcgc tgaataaaga agacgagaag
    12481 atccgcttcc gcgatattca ggcacagccg cgcaaaatta tctccagccc gacctggtct
    12541 ggtctggaag atgaacacgt ttcttacaac gccggttaca ccaacgttca cgagctgatc
    12601 ccatggcgta cgctctctgg tcgtcagcaa ctgtatcagg atcaccagtg gatgcgtgat
    12661 ttcggtgaaa gcctgctggt ttatcgtccg ccgatcgaca cccgttcggt gaaagaagtg
    12721 ataggccaga aatccaacgg caacccggaa aaagcgctca acttcctgac gccgcaccag
    12781 aagtggggga tccactccac ctacagcgac aaccagttga tgctgacctt aggtcgcggt
    12841 ggcccggtgg tctggctgag cgaagccgat gccaaagagc tgggcattgc cgataacgac
    12901 tggattgaag tttacaacag caacggtgcg ctgactgccc gtgcggttgt cagccagcgt
    12961 gttccggcag ggatgaccat gatgtaccac gcgcaggaac gtatcgttaa cctgccgggt
    13021 tcggaaatta ctggccagcg tggggggatc cacaactcgg tcacccgtat cacgccgaaa
    13081 ccgacgcata tgattggtgg ctatgcccat ctggcatacg gctttaacta ctacggcacc
    13141 gtaggttcta accgcgatga gtttgttgta gtgcgtaaga tgaagaacat tgactggtta
    13201 gatggcgaag gcaatgacta ggtacaggag agcgtaaaat gaaaattcgt tcacaagtcg
    13261 gcatggtgct gaatctcgat aagtgcatcg gctgccacac ctgttcagtt acctgtaaaa
    13321 acgtctggac cagccgtgaa ggcgtggagt acgcgtggtt caacaacgtg gaaaccaagc
    13381 cgggtcaggg cttcccgact gactgggaaa accaggaaaa atacaaaggc ggctggatcc
    13441 gtaaaatcaa cggcaaactg cagccgcgca tgggtaaccg tgccatgttg ctgggtaaaa
    13501 tcttcgctaa cccgcatctg ccggggatcg acgattatta cgagccgttc gattttgact
    13561 atcagaacct gcataccgcg ccggaaggca gcaaatcgca gccgattgcc cgtccccgtt
    13621 cgctgattac cggggaacgg atggcgaaaa tcgaaaaagg gccgaactgg gaagatgacc
    13681 tgggtggtga gtttgacaaa ctggcgaaag acaagaactt cgacaacatc cagaaggcga
    13741 tgtatagcca gttcgaaaac acctttatga tgtatttgcc gcgcctgtgc gaacactgcc
    13801 tgaacccggc atgtgtggcg acctgcccga gcggtgcgat ttacaagcgt gaagaagatg
    13861 gcatcgtcct gatcgaccag gataaatgcc gtggctggcg tatgtgcatc accggatgcc
    13921 cgtacaaaaa aatctacttc aactggaaga gcggtaagtc tgagaagtgc atcttctgct
    13981 atccgcgtat tgaagcgggt cagccgaccg tgtgctcaga aacctgtgtc ggtcgtatcc
    14041 gttatcttgg cgtgctgctg tacgatgccg acgcgattga acgtgcagcc agcaccgaga
    14101 acgagaaaga tctttaccag cgtcagctgg aggtgttcct cgatccgaac gatccgaaag
    14161 tcatcgagca ggcgattaaa gacggtattc cgctgagcgt tattgaagcc gcacagcagt
    14221 cgccggttta taaaatggca atggaatgga aactggcgct gccgctgcat ccagaatatc
    14281 gcacactgcc gatggtctgg tacgtgccgc ctctgtctcc gattcagtct gcagcagacg
    14341 cgggtgagct gggtagcaac ggcattctgc cagacgtcga aagcttgcgt attccggtac
    14401 agtatctggc gaatctgctg accgccggtg ataccaaacc ggtactgcgc gcactgaaac
    14461 gtatgctggc gatgcgtcat tacaaacgtg ctgaaaccgt tgacggtaaa gttgataccc
    14521 gtgcgctgga agaggtcggt ctgaccgaag cccaggcaca ggagatgtac cgttatctgg
    14581 ctattgctaa ctacgaagat cgctttgtgg tgccgagtag tcatcgtgaa ctggcacggg
    14641 aagccttccc ggagaaaaat ggctgcggct ttacctttgg tgatggctgc cacggctcag
    14701 ataccaaatt caatctgttc aacagccgtc gtatcgatgc catcgatgtg accagcaaaa
    14761 cggagccgca tccatgatcg aactcgtgat tgtatcgcgt ctccttgaat atccggatgc
    14821 tgccttatgg cagcatcaac aagagatgtt tgaggtgatt gctgcgtcga aaaatctgtc
    14881 gaaagaagat gcccatgcgc tgggcatttt cctgcgcgat ttaacggcga tggatccgct
    14941 cgatgcccag gcccagtaca gcgaactgtt cgaccgtggc cgcgccacgt cactgttgct
    15001 atttgaacat gttcacggtg aatcccgtga ccgcggccag gcgatggtgg acctgctggc
    15061 gcagtacgag cagcacggct tgcagttaaa cagccgcgaa ttaccggacc atctgccgct
    15121 gtatctggag tacctgtcgc agctgccgca aagcgaagcc gtggaaggtt tgaaagatat
    15181 cgcgccgatt ctggcattgc tgagcgcgcg tctgcaacag cgtgaaagcc gttatgccgt
    15241 gatgtttgat ctgctgctga aattggccaa taccgctatc gacagcgaca aagtggcgga
    15301 aaaaattgcc gacgaagcgc gcgatgatac gccgcaggcg ctggatgctg tctgggaaga
    15361 agagcaggtt aaattctttg ctgacaaagg ctgcggtgat tcagcaatca ctgctcatca
    15421 gcgtcgcttt gccggtgccg tcgcgccgca atatctgaat atcaccaccg gaggacagca
    15481 ctaatgcaat tcctgaatat gttcttcttt gatatctacc cgtacatagc cggggcggtc
    15541 ttcctgattg gtagctggct gcgttatgac tacgggcagt acacctggcg cgcggcgtcc
    15601 agccagatgc tggatcgcaa agggatgaac ctggcgtcga acctgttcca tatcggtatt
    15661 ctggggattt ttgctggtca cttcttcggt atgctgacgc cgcactggat gtatgaagcc
    15721 tggctgccga ttgaagtgaa acagaaaatg gcgatgtttg ctggtggtgc cagcggcgtg
    15781 ctgtgtctga ttggcggcgt gctgttgctg aagcgtcgtc tgttcagccc acgcgtgcgt
    15841 gcaaccacta ccggagcgga tatcctgatc ctgtcgctgc tcgttatcca gtgcgcgctg
    15901 ggcctgttga ccattccgtt ctccgctcag catatggacg gtagcgagat gatgaaactg
    15961 gttggctggg cgcagtcggt ggtgaccttc cacggtggcg cttctcaaca cctcgatggt
    16021 gtggcgttta tcttccgtct gcacctggtg ctggggatga cgttattcct gctgttcccg
    16081 ttctcgcgtc tggtacacat ctggagcgta ccggtggagt atctgacacg taagtaccag
    16141 ctggtgcgcg ctcgtcacta aacgaatttt agttcacata gaccctgctt cggcggggtt
    16201 ttttatgggc acggtgcggg gtgagttgtc ggatgcgctt cgcttatccg acctacaggg
    16261 gaggatattg taggcccggt aaacgtggtg ccatcgggca aaattagctc ggagtaacag
    16321 gttttgatta ttcaaggaag cgatggtggt gggggaagga ttactcagcg ctgcgcgctt
    16381 cgcccttcgg gtcgttgcct gcggcaacgc tctctcgctg gcgctcaagt cgaaccttgg
    16441 tcgaagcttc tcatccttcc ccgcttgggc agaatattta attgcggatt cgtttgagag
    16501 tttacggact tttgaaaagt gatggtggtg ggggaaggat tcgaaccttc gaagtcgatg
    16561 acggcagatt tacagtctgc tccctttggc cgctcgggaa ccccaccagg ggtaattcaa
    16621 attttg
//
LOCUS       DADMJB010000091        16619 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.091, whole genome shotgun sequence.
ACCESSION   DADMJB010000091 DADMJB010000000
VERSION     DADMJB010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16619)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16619)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16619
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.091"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..244)
                     /locus_tag="JN078_002545"
     CDS             complement(<1..244)
                     /locus_tag="JN078_002545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000100289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HAY9041707.1"
                     /translation="MSSWLAMLQDAAEMFVFLAVELSLLFIVISAGVSLIRQKVPDHK
                     IQQMMGARKGRGYLLAALLGAVTPFCSCSTIPIVTWI"
     gene            351..647
                     /locus_tag="JN078_002546"
     CDS             351..647
                     /locus_tag="JN078_002546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001465662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAY9041708.1"
                     /translation="MQLEEVAKALKELGHPTRLFIFKHLVKAGEQGLPVGELQKQLGI
                     PGSTLSHHISALVSVGLVKQNRESRTLMCVSQYAMLEAIIEFLREECCVNSKIA"
     gene            complement(781..1206)
                     /gene="arsC"
                     /locus_tag="JN078_002547"
     CDS             complement(781..1206)
                     /gene="arsC"
                     /locus_tag="JN078_002547"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin-dependent arsenate reductase"
                     /protein_id="HAY9041709.1"
                     /translation="MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDEL
                     VKLIADMGISVRALLRKNVEPYEELGLAEDKFTDDRLIDFMLQHPILINRPIVVTPLG
                     TRLCRPSEVVLEILPDAQKGAFSKEDGEKVVDEAGKRLK"
     gene            complement(1219..2508)
                     /gene="arsB"
                     /locus_tag="JN078_002548"
     CDS             complement(1219..2508)
                     /gene="arsB"
                     /locus_tag="JN078_002548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite/antimonite:H(+) antiporter ArsB"
                     /protein_id="HAY9041710.1"
                     /translation="MLLAGAIFVLTIVLVIWQPKGLGIGWSATLGAVLALVTGVVHPG
                     DIPVVWNIVWNATAAFIAVIIISLLLDESGFFEWAALHVSRWGNGRGRLLFTWIVLLG
                     AAVAALFANDGAALILTPIVIAMLLALGFSKGTTLAFVMAAGFIADTASLPLIVSNLV
                     NIVSADFFGLGFREYASVMVPVDIAAIVATLVMLHLYFRKDIPQNYDMALLKSPAEAI
                     KDPATFKTGWVVLLLLLVGFFVLEPLGIPVSAIAAVGALILFVVAKRGHAINTGKVLR
                     GAPWQIVIFSLGMYLVVYGLRNAGLTEYLSGVLNVLADNGLWAATLGTGFLTAFLSSI
                     MNNMPTVLVGALSIDGSTASGVIKEAMVYANVIGCDLGPKITPIGSLATLLWLHVLSQ
                     KNMTISWGYYFRTGIIMTLPVLFVTLAALALRLSFTL"
     gene            complement(2563..2916)
                     /gene="arsR"
                     /locus_tag="JN078_002549"
     CDS             complement(2563..2916)
                     /gene="arsR"
                     /locus_tag="JN078_002549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="As(III)-sensing metalloregulatory
                     transcriptional repressor ArsR"
                     /protein_id="HAY9041711.1"
                     /translation="MSFLLPIQLFKILADETRLGIVLLLSELGELCVCDLCTALDQSQ
                     PKISRHLALLRESGLLLDRKQGKWVHYRLSPHIPAWAAKIIDEAWRCEQEKIQAIVRN
                     LARQNCSADSKNICS"
     gene            3655..3738
                     /locus_tag="JN078_002550"
     CDS             3655..3738
                     /locus_tag="JN078_002550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165328.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Damage inducible protein"
                     /protein_id="HAY9041712.1"
                     /translation="MIDKAIIVLGALIALLELIRFLLQLLN"
     gene            complement(3792..5144)
                     /gene="gorA"
                     /locus_tag="JN078_002551"
     CDS             complement(3792..5144)
                     /gene="gorA"
                     /locus_tag="JN078_002551"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003861215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HAY9041713.1"
                     /translation="MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVN
                     VGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENV
                     LGKNNVDVIKGFARFVDAKMLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGF
                     FALPALPERVAVVGAGYIAVELAGVINGLGAKTHLFVRKHAPLRSFDPMISETLVEVM
                     NAEGPQLHTNAIPKAVVKNADGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAG
                     VKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSEHLFNNKPDEHL
                     DYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMK
                     LVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVTMR
                     "
     gene            complement(5216..6058)
                     /locus_tag="JN078_002552"
     CDS             complement(5216..6058)
                     /locus_tag="JN078_002552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HAY9041714.1"
                     /translation="MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKDKPFLYLDTHAG
                     AGRYQLGSEHAERTGEYLEGIARIWQQDDLPAELEAYINVVKHFNRSGQLRYYPGSPL
                     IARQLLREQDSLQLTELHPSDYPLLRSEFQKDSRARVEKADGFQQLKAKLPPVSRRGL
                     ILIDPPYEMKTDYQAVVSGIAEGYKRFATGTYALWYPVVLRQQIKRMIHDLEATGIRK
                     ILQIELAVLPDSDRRGMTASGMIVINPPWKLEQQMNNVLPWLHSKLVPAGTGHATVSW
                     IVPE"
     gene            6261..8303
                     /gene="prlC"
                     /locus_tag="JN078_002553"
     CDS             6261..8303
                     /gene="prlC"
                     /locus_tag="JN078_002553"
                     /EC_number="3.4.24.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase A"
                     /protein_id="HAY9041715.1"
                     /translation="MTNPLLTPFELPPFSKILPEHVVPAVTQALNDCRENVERVVAQG
                     APYTWENLCQPLAEVDDVLGRIFSPVSHLNSVKNSPELREAYEQTLPLLSEYSTWVGQ
                     HEGLYKAYRDLRDGDHYATLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLS
                     ELGNQYSNNVLDATMGWTKLVTDEAELAGMPESALAAAKAQAEAKELEGYLLTLDIPS
                     YLPVMTYCDNQALREEMYRAYSTRASDQGPNAGKWDNSKVMEEILALRHELAQLLGFE
                     NYAFKSLATKMAENPQQVLDFLTDLAKRARPQGEKELAQLRAFAKAEFGVDELQPWDI
                     AYYSEKQKQHLYSISDEQLRPYFPENKAVNGLFEVVKRIYGITAKERKDVDVWHPDVR
                     FFELYDENNELRGSFYLDLYARENKRGGAWMDDCVGQMRKADGSLQKPVAYLTCNFNR
                     PVNGKPALFTHDEVITLFHEFGHGLHHMLTRIETAGVSGISGVPWDAVELPSQFMENW
                     CWEPEALAFISGHYETGEPLPKELLDKMLAAKNYQAALFILRQLEFGLFDFRLHAEFR
                     PDQGAKILETLAEIKKLVAVVPSPSWGRFPHAFSHIFAGGYAAGYYSYLWADVLAADA
                     FSRFEEEGIFNRETGQSFLDNILSRGGSEEPMDLFKRFRGREPQLDAMLEHYGIKG"
     gene            8311..9063
                     /gene="rsmJ"
                     /locus_tag="JN078_002554"
     CDS             8311..9063
                     /gene="rsmJ"
                     /locus_tag="JN078_002554"
                     /EC_number="2.1.1.242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709277.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1516)-N(2))-methyltransferase
                     RsmJ"
                     /protein_id="HAY9041716.1"
                     /translation="MKICLIDETGAGDGALSVLAARWGLEHDEDNLMALVLTPEHLEL
                     RKRDEPKLGGIFVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRD
                     AFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD
                     ITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLATKRVVVK
                     RPDYAPPLANVTTPNAVVTKGHRFDIYAGTPV"
     gene            complement(9112..10581)
                     /gene="dtpB"
                     /locus_tag="JN078_002555"
     CDS             complement(9112..10581)
                     /gene="dtpB"
                     /locus_tag="JN078_002555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/tripeptide permease DtpB"
                     /protein_id="HAY9041717.1"
                     /translation="MNTTTPMGMLQQPRPFFMIFFVELWERFGYYGVQGVLAVFFVKQ
                     LGFSQEQAFVTFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGALVLAIGYFMTGMSL
                     LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLIAL
                     SLAPVIADRFGYSVTYNLCGAGLIIALLVYIACRGMVKDIGSEPDFKPMSFSKLLYVL
                     LGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFRQAFKLDKTGRNKMFVAFVLML
                     EAVVFYILYAQMPTSLNFFAINNVHHEILGFSINSVSFQALNPFWVVLASPILAGIYT
                     HLGNKGKDLSMPMKFTLGMFMCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLG
                     ELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLET
                     LPVYTNVFGKIGLVTLGVAVVMLLMVPWLKRMIATPESH"
     gene            complement(10899..11333)
                     /gene="uspA"
                     /locus_tag="JN078_002556"
     CDS             complement(10899..11333)
                     /gene="uspA"
                     /locus_tag="JN078_002556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspA"
                     /protein_id="HAY9041718.1"
                     /translation="MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYS
                     DLYTGLIDVNLGDMQKRISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIKKY
                     DMDLVVCGHHQDFWSKLMSSARQLINTVHVDMLIVPLRDEEE"
     gene            11724..12059
                     /gene="uspB"
                     /locus_tag="JN078_002557"
     CDS             11724..12059
                     /gene="uspB"
                     /locus_tag="JN078_002557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspB"
                     /protein_id="HAY9041719.1"
                     /translation="MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYV
                     DGGGFFTSHGQPNKQVRLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGLVVV
                     SLIALMIWH"
     gene            complement(12303..13802)
                     /gene="pitA"
                     /locus_tag="JN078_002558"
     CDS             complement(12303..13802)
                     /gene="pitA"
                     /locus_tag="JN078_002558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter PitA"
                     /protein_id="HAY9041720.1"
                     /translation="MLHLFAGLDLHTGLLLLLALAFVLFYEAINGFHDTANAVATVIY
                     TRAMRSQLAVVMAAVFNFLGVLLGGLSVAYAIVHMLPTDLLLNMGSSHGLAMVFSMLL
                     AAIIWNLGTWYFGLPASSSHTLIGAIIGIGLTNALMTGTSVVDALNIPKVLSIFGSLI
                     VSPIVGLVFAGGLIFLLRRYWSGTKKRARIHLTPAEREKKDGKKKPPFWTRIALILSA
                     IGVAFSHGANDGQKGIGLVMLVLIGVAPAGFVVNMNATGYEITRTRDAINNVEAYFEQ
                     HPALLKQATGADQLVPAPEAGATQPAEFHCHPSNTINALNRLKGMLTTDVESYDKLSL
                     DQRSQMRRIMLCVSDTIDKVVKIPGVSADDQRLLKKLKSDMLSTIEYAPVWIIMAVAL
                     ALGIGTMIGWRRVATTIGEKIGKKGMTYAQGMSAQMTAAVSIGLASYTGMPVSTTHVL
                     SSSVAGTMVVDGGGLQRKTVTSILMAWVFTLPAAVLLSGGLYWLSLQFL"
     gene            14034..15236
                     /locus_tag="JN078_002559"
     CDS             14034..15236
                     /locus_tag="JN078_002559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HAY9041721.1"
                     /translation="MERFDAIIIGAGAAGMFCSALAGQAGRRVLLIDNGKKPGRKILM
                     SGGGRCNFTNLYVEPGAYLSQNPHFCKSALARFTQWDFIDLVNKHGIAWHEKTLGQLF
                     CDDSAQQIVDMLVDECEKGNVTFRLRSEVLSVAKDETGFTLELNGMTVGCEKLVIATG
                     GLSMPGLGASPFGYKIAEQFGLNVLPTRAGLVPFTLHKPLLEELQVLAGVAVPSVITA
                     ENGTVFRENLLFTHRGLSGPAVLQISSYWQPGEFVSINLLPDVDLETFLNEQRNAHPN
                     QSLKNTLAVHLPKRLVERLQQLGQIPDVSLKQLNVRDQQALISTLTDWRVQPNGTEGY
                     RTAEVTLGGVDTNELSSRTMEARKVPGLYFIGEVMDVTGWLGGYNFQWAWSSAWACAQ
                     DLIAAKSS"
     gene            complement(15551..16603)
                     /locus_tag="JN078_002560"
     CDS             complement(15551..16603)
                     /locus_tag="JN078_002560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417948.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2776 domain-containing protein"
                     /protein_id="HAY9041722.1"
                     /translation="MNIYIGWLFKLIPLIMGLICIALGGFVLESSGQSEYFVAGHVLI
                     SLAAICLALFTTAFIIISQLTRGVNTFYNILFPIIGYAGSIITMIWGWALLAGNDVMA
                     DEFVAGYVIFGIGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPVQAYSSLIGNCLI
                     AVPVLLTLLGFIWSITLLRSADITPHYVAGHVLLGLTAICACLIGLVATIVHQTRNTF
                     STKEHWLWCYWVIFLGSITVLQGIYVLVSSDASARLAPGIILIYLGMICYSIFSKVWL
                     LALVWRRTCSLANRIPMIPVFTCLFCLFLASFLAEMAQTDMGYFIPSRVLVGLGAVCF
                     TLFSIVSILEAGSAKK"
BASE COUNT         4268 a         4238 c         4314 g         3799 t
ORIGIN      
        1 caatccacgt aacaatgggt attgtcgagc aactacagaa cggggtaacg gctcccaaca
       61 gagcagccag gagatagcct ctcccttttc tggcccccat catctgctgg attttatggt
      121 ctggcacctt ttgtcttatc aggctgacac cggcactaat cactataaac agcaacgaaa
      181 gctcgacggc gagaaacaca aacatctctg cggcatcttg cagcatcgca agccaactac
      241 tcatacgtaa cctcattgga taaatctata tttccagaat aatcgaaatg aaattcagat
      301 caagatattt ctggtattat cgaaatatca accagacaga ggggtgtcat atgcagttgg
      361 aagaagtcgc taaagcgctg aaagagctag gtcacccgac ccgtttgttc atatttaaac
      421 atcttgtcaa agccggggaa caagggttgc cggtcggtga gttgcaaaag cagcttggga
      481 tacctggctc cacactcagc caccatatat cagcactggt atcggtagga ctggtcaaac
      541 aaaaccgtga gagtcggacg ctgatgtgtg tttcgcaata cgcaatgctg gaagcgataa
      601 ttgaattctt acgcgaggag tgctgcgtaa atagcaaaat tgcctgatgc gctacgctct
      661 acatatttca tgccatatat tgaatttgca cggttttgta ggtcggataa gacgcgttag
      721 cgtcgcatcc gacataaaca aagcgcactt taccaactat cggcagtgga tatcgccgct
      781 ttatttcagg cgcttacccg cttcatcaac cactttctcg ccatcttcct tggagaatgc
      841 gcctttttgc gcatctggca gaatttccag caccacttct gaagggcggc acaggcgagt
      901 tcccagcggc gtcaccacaa tcgggcgatt aatcagaatc gggtgctgaa gcataaagtc
      961 gattaaccga tcgtcagtaa atttatcttc cgcaaggccc agctcctcat acggttcgac
     1021 gtttttacgc agcagcgcgc gtacggaaat ccccatatcg gcaatgagtt tgaccagttc
     1081 atcgcgcgtt ggcggagttt ccagataatg gataatggtc ggttctgtgc cgctgttgcg
     1141 gatcatctcc agcgtattac gcgacgtgcc gcaggccggg ttgtgataaa tggtaatgtt
     1201 gctcatatca gtatctcatt acaaagtgaa agagagacgt agcgccagcg cagccagcgt
     1261 cacaaacagc acaggcaggg tcatgataat ccctgtacgg aagtaatatc cccagctgat
     1321 agtcatattc ttctgcgaaa gtacgtgcag ccagagtagt gtagccaggc taccaattgg
     1381 ggtaattttc ggtcccaaat cgcagccaat cacattggca taaaccatcg cttctttgat
     1441 aacgccagat gccgtgctgc catcaatgga caacgcgcca accagtaccg tcggcatatt
     1501 gttcataata gaagagagga aggcggtgag gaatccggtg ccgagcgtcg cggcccacag
     1561 gccgttatcc gccagcacgt tgagtacgcc agaaagatat tccgttaatc cggcattgcg
     1621 caggccataa accaccagat acatgccgag cgagaagatg acaatttgcc agggggcacc
     1681 gcgcaggact ttacccgtat taatcgcatg accgcgttta gcgacgacaa ataatatcag
     1741 cgcgcccaca gctgcaatgg cgctcaccgg aatgccgagc ggttccagga cgaaaaatcc
     1801 caccagcaga agcagtaaaa caacccagcc agttttgaac gtagcaggat ctttgatcgc
     1861 ttctgcggga gatttcagca gcgccatatc gtagttctgc ggaatatctt tgcgaaaata
     1921 gagatgtagc atcaccagcg tggcaacaat cgcggcgata tccaccggca ccatcaccga
     1981 ggcgtattcg cgaaagccga ggccaaagaa atcagcggaa acgatattca ccaggttgga
     2041 gacaataagc ggcaggctgg cggtatcggc aatgaatccg gccgccatca cgaacgccag
     2101 cgtcgtgcct ttactgaatc ctaaagccag cagcatggcg atgacaatcg gcgtcaaaat
     2161 aagcgctgcg ccatcattgg caaacagggc ggcaacggca gcaccgagca ggacaatcca
     2221 ggtaaacagc aagcgaccac gaccattacc ccagcgtgag acgtgcagcg ccgcccattc
     2281 aaaaaagccg gactcatcca gcagcaggct gatgataatg acggcgataa acgcagccgt
     2341 cgcgttccag acgatattcc acaccaccgg aatatcaccc ggatggacca cgcccgtaac
     2401 taacgccagt actgcgccga gcgttgcact ccagccgatg cctaaacctt tcggctgcca
     2461 gataaccaat acaatggtca ggacaaagat agcgcctgcc agtaacataa tgcctcctgg
     2521 ataaaacaca tgcgaaaata catatgtgtt tagctaaatt ttttaactgc aaatgttctt
     2581 actgtctgcg gaacagtttt gtcgagccag gttgcggaca attgcctgaa tcttttcctg
     2641 ttcacatcgc caggcttcat caattatttt cgccgcccat gctggaatat gcggcgataa
     2701 gcggtaatga acccatttac cttgcttgcg gtccagcaat agcccgcttt cacgcagcaa
     2761 tgccaggtgg cgggagatct tgggctgcga ctggtcgaga gcagtgcaga gatcgcagac
     2821 gcataactct cccagttcgc tgagcagtaa aacgatgccc agacgggttt catcagcaag
     2881 aattttgaac aattggatgg gtaacagaaa tgacatattg cgctcctgat tgttgcaggt
     2941 agtgtctctc ttcgaagcgg ataagtcaaa aacatatatg atttaacgaa tgtgtaagtg
     3001 cagaggaagg taataggtgt gaattttgag ttggctattc atttgaaagg aggtctgaat
     3061 caggacgtaa aaaaaccgac tttgcgtcgg ttttttactt tccagccctg agttggtggc
     3121 tctggctgga gtgagagagt tcttatctaa cagctcaata ctattagcca gtggctaaca
     3181 ttgcaagaat tagcgatttc ttcagctggc ggagggagca cttcggtata tatcgcagtg
     3241 acgatttata tactttcact gggtcatcgt catattaagc cttgtccgaa tccggatgta
     3301 aaaaaccgac tttgcgtcgg ttttttactt tccagccctg agttggtggc tctgactgga
     3361 gtgagatagc catcatctaa cgcatcaatg ctaataccat actgaaacta ttgcaaggac
     3421 gtgctggttt tataacctgc atgtactgta tgattatcca gttagctctg aggcattttc
     3481 actctggcaa tgcgcataaa cgctttcaaa gtcctggtca gaagtacggg tggtgccgtt
     3541 aactgatgct ctggccggag tgagagagtt cttatctaac aatgagacat gcgccgtgac
     3601 aggcagtgga tgagtaagcg gatgcattct cactccatcg catggagaaa acgggtgatt
     3661 gataaagcaa tcatcgttct aggggcgtta attgcgctgc tggaactgat ccgctttctg
     3721 cttcagcttc tgaactgata gcggaaacgt aattaagggc taagagcaca ctactcttag
     3781 ccctttaaca tttaacgcat tgtcacgaac tcttctgccg ccgttgggtg aatggcgacg
     3841 gtattgtcga agtctttttt ggttgccccc atcttcagcg ccaccgcgaa gccctgcaac
     3901 atttcgtcca taccaaagcc aatgccgtga ataccgacaa tcttctcttc cgatccaacg
     3961 cacaccagct tcatgcggca cggctggcgg tgagtggtga cggcggtata catcgcggtg
     4021 aaagaggatt tatacacttt cacctgatcg tcgccatact gctcgcgcgc ctgcggttcc
     4081 gttaaaccaa cagtaccaat cggcggatgg ctgaagacca cggtcggaat gttgctgtaa
     4141 tccagatgct catccggctt gttattaaac aggtgttcag agagacggcg acccgctgca
     4201 actgccaccg gtgtcagctc cactgcaccc gtgttatcgc ccaccgcgta aataccttca
     4261 atgttggtgt tttgatattt atcgacgacg atatagcctt tttcgttggt tttaacgcca
     4321 gcggcttcga ggttgatgtt gtcattggca ggctcgcgac caatcgccca aatcaggcaa
     4381 tccaccgttt cactgcgacc atcttccagc tccagcgtca ggctaccatc ggcatttttc
     4441 actaccgctt tcgggatggc gttggtgtgc agctgcgggc cttcggcgtt catcacttcg
     4501 accagcgttt cggaaatcat cgggtcgaag ctgcgcagcg gcgcatgttt acgcacaaac
     4561 agatgcgttt tcgcgccgag gccgttaatc acgcccgcca gctcaacggc gatgtaaccc
     4621 gcgccaacaa ccgccacgcg ctctggcaaa gcaggaaggg cgaagaagcc atcagaatca
     4681 ataccgtatt ccacgcccgg aatatccggg tggctcggac gaccgcctgt ggcgatcaga
     4741 atatgatcgg ccgtgatggt ttcgccgttt acctccagca ttttggcatc aacgaagcgg
     4801 gcaaagcctt tgattacatc aacgttattt ttaccgagca cgttttcata ggaagtatga
     4861 atacggtcga tataggcggt acggctggcg atcaacgttt cccagttgaa cttgttgatg
     4921 gtggtatcga aaccataatc agggccgtac atatggatcg cttcacggat ttgcgccgcg
     4981 tgccacatca cttttttcgg cacgcagccg acgttcacgc aggtgccgcc cagctctttg
     5041 gcttcaatca gtgcgcattt ctggccgtac atagccgcgc ggttgatgga ggctataccg
     5101 ccgctgccgc cgccgatggc gatgtaatca tagtgtttag tcatgacaga gtgtccttat
     5161 cgttgattac cgcgattgta gcgcgagacg taataggtgc cagcaatggc tgcaattact
     5221 ccggcacgat ccagcttacg gtggcgtgcc cggtgcctgc cggaaccagt ttgctgtgca
     5281 gccacggcag cacgttattc atctgctgtt ccagtttcca cggcgggtta atcacaatca
     5341 tgccggaagc ggtcatgcca cggcgatcgc tgtctggcag taccgccagt tcaatttgca
     5401 gaattttgcg aataccggtc gcttccagat cgtggatcat gcgcttaatt tgctgacgca
     5461 gcaccaccgg ataccacagt gcgtaagtac cagtggcgaa acgtttgtaa ccttctgcta
     5521 tcccgctgac caccgcctga tagtcggttt tcatttcata cggcgggtcg ataaggatta
     5581 aaccacggcg ggaaaccggc ggcagtttgg ccttaagctg ctggaaacca tcggcttttt
     5641 cgacgcgcgc acggctgtct ttctgaaatt cagaacgcag caacgggtaa tcgctcgggt
     5701 gcagttcggt cagttgcagg ctgtcttgtt cgcgcagtag ctggcgagca atcaatggcg
     5761 aaccggggta gtaacgcaac tgaccgctac ggttgaagtg ttttaccaca ttgatgtacg
     5821 cctccagttc tgcgggcaaa tcgtcctgct gccagatacg ggcgatgcct tcgagatatt
     5881 cgccggtacg ctcggcatgt tcgctgccta actgataacg cccggcccct gcgtgggtgt
     5941 cgagatagag aaacggttta tctttctctt tcagcgactc gatgatcagg ctctgaacgg
     6001 tatgtttaag gacgtcggcg tggttgccag cgtgaaagct gtggcgataa ctgagcatgg
     6061 gtaaaggtgt tccggtaagt aaaaatcggc ccgtattcgg ggcgcacaaa agcgtatcag
     6121 gacagtatac cgaaaagagg ccgccgccgc gaaagcgtaa cgtttctcat tgaaattcac
     6181 tacacttaac cccatgctac acacattatg taaagcgcct gttgagcgct tccttaacct
     6241 ctttaaccag gactgcgcga atgacgaatc cgttactgac tccctttgaa ttgcctccgt
     6301 tttctaaaat tctcccggaa catgtcgttc cagccgtgac tcaggcgctg aacgattgcc
     6361 gcgaaaatgt ggagcgcgta gtagcgcaag gggcaccgta cacctgggaa aatctctgcc
     6421 agccgttggc ggaagtggac gatgtgttgg ggcgtatctt ctccccggtc agccacctga
     6481 actcggtgaa aaatagcccg gaactgcgtg aagcctacga gcaaaccctg ccgctgctgt
     6541 cggaatacag cacctgggta gggcaacatg aagggctgta taaagcgtac cgcgacctgc
     6601 gcgatggcga tcattacgcc acgctgaaca cggcgcagaa gaaagcggtt gataacgccc
     6661 tgcgtgattt tgaactctct ggcataggtc tgccgaaaga gaaacagcag cgttacggcg
     6721 aaattgcgac ccgtctttct gaactgggca accagtacag caacaacgtc ctcgatgcga
     6781 caatgggctg gaccaaactc gttaccgacg aagcggagct ggcggggatg cctgaaagcg
     6841 cgctggctgc ggcaaaagcc caggccgaag cgaaagagct ggaaggctac ctgctgacgc
     6901 tggatatccc aagctacctg ccggtaatga cctactgcga caaccaggcc ttgcgtgaag
     6961 agatgtatcg cgcttacagc acccgcgcct ccgatcaagg cccgaacgcc ggtaaatggg
     7021 ataacagcaa ggtgatggaa gagatcctcg ctctgcgtca cgaactggcg caactgctgg
     7081 gctttgaaaa ctacgccttt aaatcccttg ccactaaaat ggcagaaaac ccgcagcagg
     7141 tgctggattt cttaaccgat ctggcaaaac gcgcgcgtcc gcaaggcgaa aaagagctgg
     7201 cacaactgcg cgccttcgcc aaagcggaat ttggcgtcga tgagttgcag ccgtgggata
     7261 tcgcgtacta cagcgaaaaa caaaaacagc acctctacag catcagtgac gaacagctgc
     7321 gtccgtactt cccggaaaac aaagcggtta acggcctgtt tgaagtggtg aaacgtattt
     7381 acggcatcac cgctaaagag cgtaaagatg ttgatgtctg gcatccggat gtacgtttct
     7441 tcgaactgta tgacgagaac aacgaactgc gcggcagctt ctacctcgat ctgtatgccc
     7501 gtgaaaacaa gcgcggcggg gcgtggatgg atgactgcgt aggccagatg cgtaaagctg
     7561 acggttctct gcaaaaaccg gtcgcgtatt tgacttgtaa cttcaaccgc ccggtaaatg
     7621 gtaaaccggc gctgttcact cacgacgaag tgatcaccct gttccacgag ttcggtcacg
     7681 gcctgcacca tatgctgacc cgcatcgaaa ccgctggtgt ttccggtatc agcggtgtgc
     7741 cgtgggatgc ggtcgaactg ccgagtcagt ttatggaaaa ctggtgctgg gagccggagg
     7801 cgctggcgtt tatctctggt cactatgaaa ccggcgaacc gctgccgaaa gagttgctgg
     7861 ataaaatgct ggcggcgaag aactaccagg cggcgctgtt tattctgcgc cagctggagt
     7921 tcggcctgtt cgatttccgc ctccatgccg agttccgccc ggatcagggt gcgaaaatcc
     7981 tcgaaactct ggcagaaatc aagaaactgg ttgccgtagt accgtctcca tcctggggcc
     8041 gtttcccgca cgctttcagc catattttcg ccggtggtta tgccgcaggt tactacagct
     8101 acctgtgggc tgacgtactg gcggcagatg ccttctcgcg ctttgaggaa gagggcattt
     8161 tcaaccgtga aaccgggcag tcgttcctcg acaacattct gagccgtggc ggttcagaag
     8221 agccgatgga tctgttcaaa cgcttccgtg gtcgtgaacc gcagctggat gcgatgctgg
     8281 agcattacgg cattaagggc tgatcattca gtgaaaatct gcttaattga tgaaacaggc
     8341 gccggagacg gcgccttatc tgttctggcg gcccgctggg ggctggagca cgatgaagac
     8401 aacctgatgg cgctggtgtt aacgccggaa catctggaat tgcgcaagcg tgatgagcca
     8461 aaacttggcg gcatctttgt tgattttgtt ggcggagcga tggcgcaccg acgcaaattc
     8521 ggcggtggtc gcggtgaggc ggtggcgaaa gcggtgggca ttaaaggcga ttatttgccg
     8581 gatgtggtgg acgccaccgc agggctgggg cgcgatgcct ttgtactggc ttcagtcggc
     8641 tgccgcgtgc ggatgctgga gcgtaatcca gtggttgccg cgctactcga cgacggcctg
     8701 gcgcgtggtt atgcggatgc ggaaatcggc ggctggttgc aggagcggtt gcagttaatt
     8761 cacgcctcca gcctgacggc gctaaccgat attaccccac gcccgcaggt ggtctatctc
     8821 gatccgatgt tcccgcataa gcagaaaagc gcgctagtga aaaaagagat gcgtgtcttt
     8881 cagtcgctgg tgggaccgga tcttgatgcc gatggattac tggagcctgc acgcttgctg
     8941 gcgaccaaac gcgtggtggt aaagcgcccg gactacgcgc caccgctagc gaatgtcacc
     9001 acgccaaacg cggttgtgac taaagggcat cgctttgata tctatgcagg tacgcccgtg
     9061 taaaagtaaa gcagggtagc gataacgcta ccctgctttc tgcaagaata attaatggct
     9121 ttccggcgtc gcaatcatgc gtttcagcca cggcaccatc aacagcatca ctactgcaac
     9181 gcccagcgtg accagaccaa tcttaccaaa cacgttggta tagacgggca acgtctcaag
     9241 cggatcggta atgttgtccg gcaccgcggt aaatgttgcc acatagccgc ccagcaagaa
     9301 cgcggcagcc tgcgtcagga accacatccc gagaataaag cccatcaaat gctgcggcac
     9361 cagggcagca atcatcgcca ggccaagggc gctaataaac agttcaccta agctctggaa
     9421 taagtacacc agcacgataa accatggcga tgtcagccct tgtgcatccg caaaccacat
     9481 tcccgcagct gccgccgtca aaaagcccag tgagcacata aacatgccga gagtaaattt
     9541 catcggcatc gagaggtctt tgcctttgtt acccagatgc gtgtaaatgc ctgccagtat
     9601 tgggctggcg agtaccaccc agaacgggtt aagcgcctgg aagctgaccg agttgatgga
     9661 aaaaccgaga atttcatgat gcacgttgtt gatggcaaag aagttcagcg atgttggcat
     9721 ctgggcgtag agaatgtaaa acaccaccgc ttcgagcatc aggacaaagg cgacaaacat
     9781 tttattgcgc ccggttttat ccagcttgaa tgcctgacga aagaagatga tggtgacgac
     9841 gatggagaga acaatcagca ccagattggc gacttctacg ttgtgcatca gccatgcaca
     9901 tacgaagatc atcaccacgc tgccaagtaa tacgtacaac agtttgctga agctcatcgg
     9961 cttgaagtcg ggttcagaac caatgtcttt caccattcca cgacaggcga tgtaaaccag
    10021 taatgcgata attaaccccg ccccgcacag gttgtaggtg actgaataac cgaatctatc
    10081 agcgatcaca ggggccagcg ataacgctat caacgagccg atattgatcg acatatagaa
    10141 cagggtgaat gcgccatcaa gccgcggatc tttcggcgga tagcacttcg aaagcaagct
    10201 ggctgggtta gctttaaaca ggccgttacc gacagcgata gtccccaggg cgatgaaaat
    10261 caggtcaggc ttaagtagcg acatgccggt catgaagtag ccaatcgcca gcacaagtgc
    10321 tccgagaaca atggtgcgtt tggtccccag caggtggtcg ccgacatagc cgccaatgga
    10381 aatgaggcca tagaccagcg cagcaaaagc accaaaagtg acaaaagcct gctcttgcga
    10441 gaatccaagc tgtttaacga agaaaaccgc cagtacgccc tgcacgccgt agtagccgaa
    10501 tcgctcccat aactcgacaa aaaagatcat gaaaaatggg cgaggttgct gcagcatccc
    10561 catgggtgtt gttgtattca tatttattaa ccttccaata ccatcctgaa aagtatgaac
    10621 gcgtaaggga taacgcgcga aaaagtttac atctgtcaga gattcttaat attgatgcgg
    10681 tgaatggatt aatacactat tacaacagaa aataaccagc taatcacact aatgatggaa
    10741 aatatgatgg tgttaaatgt tgtattggca ggagattttg attgcgtacg cagatcgtag
    10801 gccagataag gggtttacgc tgcatcaggt aacaaggcgc gccaaaaagc aaaacgcccg
    10861 catatgcggg cgttcaggaa cacgtcgtgg agggaagatt attcttcttc gtcgcgcagc
    10921 ggaacaatca gcatatcaac gtgaacggtg ttgatcagct gacgtgcgga agacatcagt
    10981 ttgctccaga agtcctggtg gtgaccacaa accaccagat ccatatcgta tttcttgatt
    11041 gcatcgacca gaacctggcc caggtcgccg ctgccgctca gggtttcagt gattgggtag
    11101 cctgcattag tggaaagctc ggtcagcgca tgatgtgtct cttcagagat gcgtttctgc
    11161 atatcaccca gattcacatc aataagcccg gtgtataggt cagagtagtt tacatctacg
    11221 tggatcagag aaactttcgc attgtagggg cgagccatag agactgcttt ctctaccaga
    11281 actttgcttt ccggggagag atcgaccgcg atgagaatgt gtttataagc catagtgtta
    11341 ctccttccat aaagttgtcg atgactggcc agctagcgtt tcttgtgccg ttacgtcacc
    11401 cgcgtcctgc gaactacgtg cgcggggcta acccagccgt aaagattcag tgttaagacc
    11461 atccttacct tatagcgacc cggatgatcc gtcaatccgc cttgcttacc cgttagataa
    11521 acaaattttc gacatgaata tattgatagt ggttaacctt ctggaaaaaa aacaacctga
    11581 tctcctacac tatctataga gccgctcgga tgttggtcac cacaaaagcg gtttctccag
    11641 gacctggtgt taactgattg gcagcgtatc gggagcggta gccccggggt ggaactccgc
    11701 gggcaggtcg ccggggagga ggtatgataa gcaccgtcgc attattttgg gctttatgtg
    11761 tcgtttgcat tgttaacatg gcgcgctatt tctcatcact acgcgcgttg ttagtggtac
    11821 tgcgtaactg cgatccattg ctctatcaat atgttgatgg agggggcttt tttacctcac
    11881 atggccaacc caacaaacag gtgcgtctcg tttggtatat ctatgcccaa cgttatcgcg
    11941 atcatcacga tgatgagttt attcgccgct gtgagcgggt gcgtcggcag tttattctga
    12001 ctagcgcatt gtgtggtctg gtggtggtca gcctgattgc attgatgatt tggcattaag
    12061 cacttcagca ataataacgc ataaaaaaag ctggccagta aactgacccg ctcgagactg
    12121 attacaaacg caaaattgcc tgatgcgcta cgcttatcag gcctgcataa tctctgcaat
    12181 ctattgaatt tgcatgtttt tgtaggccga ataaggcgtt cacgccgcat ccggcatgaa
    12241 caaagcgcac tatgtcacaa tctgaagcgg gccagctgac ccgctcgttt tggtgcgtac
    12301 gattacagga actgcaagga gagccagtac agcccgccgg aaagcagtac cgcagccgga
    12361 agggtaaaca cccaggccat cagaatgctg gtcacggttt tacgctgtaa gccgccacca
    12421 tctaccacca tcgtccccgc gacagaagag gagagtacgt gagtagtgga aaccggcatc
    12481 ccggtataac tcgccaggcc gatagacact gccgccgtca tctgggcaga catcccctga
    12541 gcgtaggtca tgcctttctt accgattttc tcaccgatag tcgttgccac acgacgccag
    12601 ccaatcatcg taccgatacc taacgccagc gcgaccgcca tgatgatcca caccggtgca
    12661 tactcgatgg tgctaagcat gtcggacttc agtttcttca acaggcgctg atcgtcagca
    12721 ctcacgccag gtatcttcac tactttgtcg atagtgtcag aaacgcacag cataatgcgg
    12781 cgcatctggc tacgttgatc aagcgacagc ttgtcgtagc tttccacatc ggtagttaac
    12841 atacctttca ggcggttgag cgcgttaatg gtattcgacg gatggcaatg gaactccgcg
    12901 ggttgcgttg cgccagcttc cggagccggt actaactgat cagcaccggt agcctgtttc
    12961 agcagcgcag gatgctgctc aaagtaagct tcgacgttgt tgatggcatc acgggtacgg
    13021 gtgatttcgt agccagtggc attcatattc accacgaagc ctgctggtgc gacaccaatc
    13081 aataccaaca taaccagacc aatgcctttc tgaccatcgt tcgcgccgtg cgaaaacgcc
    13141 acgccgatag cggaaaggat cagcgcaata cgcgtccaga acggcggctt tttcttgccg
    13201 tctttctttt cacgctccgc tggggtcagg tggatacggg cgcgtttctt ggtgccgctc
    13261 cagtagcgac gcagcaagaa aatcagaccg ccagcaaaca ccaggccgac aataggggaa
    13321 acaatcagag aaccgaaaat acttaatact ttcgggatat tgagtgcatc caccactgac
    13381 gtcccggtca tcaacgcatt ggttaaacca atcccgatga tcgcgccaat cagtgtatga
    13441 gagctggatg caggtaaacc aaagtaccag gtacccaggt tccagataat cgccgccagc
    13501 aacatagaga acaccatggc aaggccatga gacgatccca tattaagcag cagatccgtc
    13561 ggcagcatat gcacaatggc ataggcaaca ctcagaccac ccagcaaaac acccaaaaag
    13621 ttgaacaccg ccgccataac cacggcgagc tgagaacgca tcgcgcgggt atagataacg
    13681 gttgccacgg cgttggctgt gtcatggaaa ccattgatgg cttcgtagaa cagcacaaaa
    13741 gccagtgcaa gcaataataa cagcccggta tgcaaatcca ggccagcaaa caaatgtagc
    13801 ataggacgtt acgccatttt gaggacatga acgcggcgca ttatcagtga ctttcgcggc
    13861 gcgggcaaag tgaaatatag actttttttg atttgcctcc tgtatggatt tcactcaaaa
    13921 aataattatc ttatataatt caggcaaata cttcctttta gtaatattga tgctggtgtg
    13981 accactgagg aatctttaca attcacgccc gttttttcta agaggagcgc aacgtggaaa
    14041 ggtttgatgc cattattata ggcgctggtg cggcgggtat gttctgttct gcgctggcag
    14101 gtcaggcagg acgccgggtt ctgctgatcg ataatggtaa aaaaccaggg cgcaaaatcc
    14161 ttatgtctgg cggtgggcgc tgcaacttta ccaaccttta tgtcgaacca ggcgcttatc
    14221 tgagccagaa tccgcatttt tgtaagtctg cactcgcgcg ttttacccag tgggatttca
    14281 ttgatctggt caataaacac ggcatcgcct ggcacgagaa aacgttagga caactcttct
    14341 gcgatgactc cgcgcagcag attgtcgaca tgctggtgga tgagtgcgag aagggcaatg
    14401 taaccttcag attgcgtagc gaagtgctga gtgtggcgaa ggatgaaaca ggcttcacgc
    14461 ttgaactgaa cggcatgact gtcggttgcg aaaagctggt catcgcgacc ggtgggctgt
    14521 caatgccggg gctgggcgca tcgccgtttg gttataagat tgccgaacaa tttggcctca
    14581 acgtgctgcc gacccgtgcg ggtctggtgc cattcactct gcataaaccg ttgctcgaag
    14641 agttacaggt gctggcgggc gtggcggtgc cttccgtgat taccgctgaa aacggcaccg
    14701 ttttccgtga gaacttactc ttcacccacc gcggcttatc tggaccggcg gtgttgcaga
    14761 tttccagcta ctggcaaccg ggtgaatttg tcagtatcaa tctgctaccg gatgtggacc
    14821 tcgaaacctt cctgaatgag cagcgtaacg cacatccgaa tcagagcctg aaaaacacac
    14881 tggcggttca tctaccgaag cggttggttg aacgcttaca gcaactcggg caaatcccgg
    14941 atgtttcgct aaaacagctc aacgtgcgtg accaacaggc actgattagc acattgaccg
    15001 actggcgcgt acaacccaac ggcactgaag gctatcgcac tgccgaagtg acgctcggcg
    15061 gcgtggacac caacgaactc tcttcacgga cgatggaagc gcgcaaagtg cctgggctgt
    15121 acttcatcgg cgaagtgatg gacgttaccg gctggctggg gggctataac ttccagtggg
    15181 cgtggtcgag tgcgtgggct tgtgcgcagg atttgattgc agcgaagtcg tcctgacctg
    15241 ttacctaaag atgaaaatta ttagagccgc attaaaaatg agctaatttt gatagtggct
    15301 atcttgtgat tattttctaa tgagcccgtg aactgaaacc ctccaggctt aatataaggt
    15361 ggaaggaaag atgattgaaa actcacccag tggccagatc tttataaaat atgaacaggc
    15421 tgaaaaagac agtaactttg ttgtttttta tccttaacca ctatgcatta atgctgcgtt
    15481 atttcatgat gcctaagaaa aaccagcgtt acgcaaatgg tcaacgctgg ttttatccgg
    15541 tacgttgcaa ttatttttta gcagaacctg cttctaatat tgaaacgatt gagaacaacg
    15601 taaagcatac cgctcccaaa ccgaccaaaa cccgcgaagg aataaaatat cccatgtcgg
    15661 tctgcgccat ttccgcaaga aacgatgcca ggaaaaggca aaacaggcag gtgaagacgg
    15721 gaatcatcgg tattctgttg gctaacgaac aggtacgtct ccataccagt gccagtagcc
    15781 agacttttga gaatatgctg taacagatca ttccgaggta aataagaata atgccgggag
    15841 ccagtcgggc gcttgcatcg gaactgacta agacgtatat cccctgcagt accgtgattg
    15901 agccgagaaa aataacccaa taacaccaca gccagtgttc tttagttgaa aacgtattac
    15961 gtgtttgatg gacaattgtg gcaacaaggc caattagaca ggcacagatt gcggttaacc
    16021 caagcaatac gtgacccgcg acataatgcg gagttatgtc agcactacgt aacagcgtaa
    16081 tagaccaaat gaaaccgagc agggtgagta aaacgggaac ggcaatgagg cagttaccga
    16141 ttaatgaaga ataagcctgt accggtgttc cgtcgctctt gctccccgct gcatttttgg
    16201 gaatgagcag aaagtgaccg gacgacgctg ccaccgtcga tacacatgcg gcaatcatac
    16261 caatgccgaa aataacatag ccggcgacaa actcgtctgc catcacatca ttgcctgcta
    16321 acagtgccca accccatatc atggtgataa ttgaccctgc atagccaata atggggaaca
    16381 atatattgta aaacgtatta acgccgcgcg tgagctgcga aatgataata aatgcggtag
    16441 tgaataatgc caggcatatg gctgccagag aaatcagcac atgacccgcg acgaaatact
    16501 cgctttgccc tgaactttcc agcacaaagc cacctaacgc gatacaaatt aagcccataa
    16561 tcaaagggat taatttgaaa agccacccga tatatatgtt cactttaaac tcctcaggt
//
LOCUS       DADMJB010000092        16522 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.092, whole genome shotgun sequence.
ACCESSION   DADMJB010000092 DADMJB010000000
VERSION     DADMJB010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16522
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.092"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            93..2321
                     /gene="crfC"
                     /locus_tag="JN078_002561"
     CDS             93..2321
                     /gene="crfC"
                     /locus_tag="JN078_002561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clamp-binding protein CrfC"
                     /protein_id="HAY9041723.1"
                     /translation="MYTQTLYELSQEAERLLQLSRQQLQLLEKMPLSVPGDDAAQLAL
                     PWSQPNIAERYAMLNNELRKISRLEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPM
                     TALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRAL
                     MQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVE
                     FVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD
                     EEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVS
                     SMWGYLANRARYELANNGKLPAPEQQRWVEDFAHAALGRRWRHADLADLEHIRHAADQ
                     LWEDSLFAQPIQALLHAAYANASLYALRSAAHKLLNYAQQAREYLDFRAHGLNVACEQ
                     LRQNIHQVEESLQLLQLNQAQVSGEIKHEIELALTSANHFLRQQQDALNAQLAALFQD
                     DSEPLSEIRTCCETLLQTAQNTISRDFTLRFAELESTLCRVLTDVIRPIEQQVKMELS
                     ESGFRPGFHFPVFHGVVPHVNTRQLFSEVISRQEATDEQSTRLGVVRETFSRWLNQPD
                     WGRGNEKSPTETVDYSVLQRALSAEVDLYCQQMAKVLAEQVDESVTAGMNTFFAEFAS
                     CLTELQTRLRESLALRQQNESVVRLMQQQLQQTVMTHGWIYTDAQLLRDDIQTLFTAE
                     RY"
     gene            2318..3201
                     /locus_tag="JN078_002562"
                     /pseudo
     CDS             2318..3201
                     /locus_tag="JN078_002562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418534.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            3465..4967
                     /gene="proP"
                     /locus_tag="JN078_002563"
     CDS             3465..4967
                     /gene="proP"
                     /locus_tag="JN078_002563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709830.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline transporter ProP"
                     /protein_id="HAY9041724.1"
                     /translation="MLKRKKVKPITLRDVTIINDSKLRKAITAASLGNAMEWFDFGVY
                     GFVAYALGKVFFPGADPSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAIT
                     IVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRK
                     RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLR
                     HALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKYWRSLLTCIGLVIATNVTYY
                     MLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVLLGSVA
                     LFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAA
                     FNISVLVAGLTPTLAAWLVESSQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGAT
                     PAASDIQEAKEILVEHYDNIEQKIDNIDHEIADLQAKRTRLVQQHPRIDE"
     gene            5033..5170
                     /gene="pmrR"
                     /locus_tag="JN078_002564"
     CDS             5033..5170
                     /gene="pmrR"
                     /locus_tag="JN078_002564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000797656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LpxT activity modulator PmrR"
                     /protein_id="HAY9041725.1"
                     /translation="MSDAHTLLQVNGGECNEKPCLYESLTTVFSVLVVSSFLYIWFAT
                     F"
     gene            complement(5188..6246)
                     /gene="pmrB"
                     /locus_tag="JN078_002565"
     CDS             complement(5188..6246)
                     /gene="pmrB"
                     /locus_tag="JN078_002565"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     PmrB"
                     /protein_id="HAY9041726.1"
                     /translation="MNLMRFLRRPISLRQRLILTIGAILLVFELISVFWLWHESTEQI
                     QLFEQALRDNRNNDRHIMREIREAVASLIVPGVFMVSLTLFICYQAVRRITRPLAELQ
                     KELEARTADNLTPIAIHSATLEIEAVVSALNDLVSRLTSTLDNERLFTADVAHELRTP
                     LAGVRLHLELLAKTHHIDVAPLVARLDQMMESVSQLLQLARAGQSFSSGNYQHVKLLE
                     DVILPSYDELSTMLDQRQQTLLLPESAADITVQGDATLLRMLLRNLVENAHRYSPQGS
                     NIMIKLQEDGGAVMAVEDEGPGIDESKCGELSKAFVRMDSRYGGIGLGLSIVSRITQL
                     HHGQFFLQNRQETSGTRA"
     gene            complement(6247..6915)
                     /gene="basR"
                     /locus_tag="JN078_002566"
     CDS             complement(6247..6915)
                     /gene="basR"
                     /locus_tag="JN078_002566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator BasR"
                     /protein_id="HAY9041727.1"
                     /translation="MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGH
                     YSLVVLDLGLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKP
                     FALEELHARIRALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSR
                     LMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKSRIRTVRGFGYMLVA
                     NEEN"
     gene            complement(6912..8555)
                     /gene="eptA"
                     /locus_tag="JN078_002567"
     CDS             complement(6912..8555)
                     /gene="eptA"
                     /locus_tag="JN078_002567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418538.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase EptA"
                     /protein_id="HAY9041728.1"
                     /translation="MLKRLLKRPSLNLLAWLLLAAFYISICLNIAFFKQVLQALPLDS
                     LHNVLVFLSMPVVAFSVINIVLTLSSFLWLNRPLACLFILVGAAAQYFIMTYGIVIDR
                     SMIANIIDTTPAESYALMTPQMLLTLGFSGVLAALIACWIKIKPATSRLRSVLFRGAN
                     ILVSVLLILLVAALFYKDYASLFRNNKELVKSLSPSNSIVASWSWYSHQRLANLPLVR
                     IGEDAHRNPLMQNEKRKNLTILIVGETSRAENFSLNGYPRETNPRLAKDNVVYFPNTV
                     SCGTATAVSVPCMFSDMPREHYKEELAQHQEGVLDIIQRAGINVLWNDNDGGCKGACD
                     RVPHQNVTALNLPGQCINGECYDEVLFHGLEEYINNLQGDGVIVLHTIGSHGPTYYNR
                     YPPQFRKFTPTCDTNEIQTCTKEQLVNTYDNTLVYVDYIVDKAINLLKEHQDKFTTSL
                     VYLSDHGESLGENGIYLHGLPYAIAPDSQKQVPMLLWLSEDYQKRYQVDQNCLQKQAQ
                     TQHYSQDNLFSTLLGLTGVETKYYQAADDILQTCRRVSK"
     gene            complement(8659..9996)
                     /gene="adiC"
                     /locus_tag="JN078_002568"
     CDS             complement(8659..9996)
                     /gene="adiC"
                     /locus_tag="JN078_002568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine/agmatine antiporter"
                     /protein_id="HAY9041729.1"
                     /translation="MSSDADAHKVGLIPVTLMVSGNIMGSGVFLLPANLASTGGIAIY
                     GWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNI
                     AMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI
                     PIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVK
                     NPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTPGA
                     IVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILM
                     TIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTT
                     IAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNPYPLDAPISKD"
     gene            complement(10133..10894)
                     /locus_tag="JN078_002569"
     CDS             complement(10133..10894)
                     /locus_tag="JN078_002569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HAY9041730.1"
                     /translation="MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNI
                     IDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAA
                     QHSMMPAETESEKERTRALLFTVLSRFLDSKKFLSLMMYMLRNCVSDSVYQIIESDIH
                     KDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQ
                     SCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTVA"
     gene            complement(11220..13487)
                     /gene="adiA"
                     /locus_tag="JN078_002570"
     CDS             complement(11220..13487)
                     /gene="adiA"
                     /locus_tag="JN078_002570"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418541.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine decarboxylase"
                     /protein_id="HAY9041731.1"
                     /translation="MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDG
                     FAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMD
                     RDLLELVDEFAWILEDTTDFIAGRAVAAMTRYRQQLLPPLFSALMKYSDIHEYSWAAP
                     GHQGGVGFTKTPAGRFYHDYYGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVF
                     GADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSR
                     NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQ
                     DLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALS
                     QASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEV
                     IDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQD
                     YWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRH
                     GIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYDANTPLAQVMPELVEQYPD
                     TYANMGIHDLGDTMFAWLKENNPGARLNEAYSGLPVAEITPREAYNAIVDNNVELVSI
                     ENLPGRIAANSVIPYPPGIPMLLSGENFGDKNSPQVSYLRSLQSWDHHFPGFEHETEG
                     TEIIDGIYHAMCVKA"
     gene            complement(13686..14594)
                     /gene="melR"
                     /locus_tag="JN078_002571"
     CDS             complement(13686..14594)
                     /gene="melR"
                     /locus_tag="JN078_002571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MelR"
                     /protein_id="HAY9041732.1"
                     /translation="MNTDTFMCSSDEKQTRSPLSLYSEYQRMEIEFRAPHIMPTSHWH
                     GQVEVNVPFDGDVEYLINNEKVNINQGHITLFWACTPHQLTDTGTCQSMAIFNLPMHL
                     FLSWPLDKDLINHVTHGMMIKSLATQQLSPFEVRRWQQELNSPNEQIRQLAIDEIGLM
                     LKRFSLSGWEPILVNKTSRTHKNSVSRHAQFYVSQMLGFIAENYDQALTINDVAEHVK
                     LNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKSILDIALTAGFRSSSRFYS
                     TFGKYVGMSPQQYRKLSQQRRQTFPG"
     gene            14877..16232
                     /gene="melA"
                     /locus_tag="JN078_002572"
     CDS             14877..16232
                     /gene="melA"
                     /locus_tag="JN078_002572"
                     /EC_number="3.2.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HAY9041733.1"
                     /translation="MMTAPKITFIGAGSTIFVKNILGDVFHREALKTAHIALMDIDPT
                     RLEESHIVVRKLMDSAGASGKITCHTQQKEALQDADFVVVAFQIGGYEPCTVTDFEVC
                     KRHGLEQTIADTLGPGGIMRALRTIPHLWQICEDMTEVCPDATLLNYVNPMAMNTWAM
                     YARYPHIKQVGLCHSVQGTAEELARDLNIDPSTLRYRCAGINHMAFYLELERKTADGS
                     YVNLYPELLAAYEAGQAPKPHIHGNTRCQNIVRYEMFKKLGYFVTESSEHFAEYTPWF
                     IKPGREDLIERYKVPLDEYPKRCVEQLANWHKELEEYKNASRIDIKPSREYASTIMNA
                     IWTGESSVIYGNVRNDGLIDNLPQGCCVEVACLVDANGIQPTKVGTLPSHLAALMQTN
                     INVQTLLTEAILTENRDRVYHAAMMDPHTAAVLGIDEIYALVDDLIAAHGDWLPGWLH
                     R"
     gene            16335..>16522
                     /locus_tag="JN078_002573"
     CDS             16335..>16522
                     /locus_tag="JN078_002573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418544.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="melibiose:sodium transporter MelB"
                     /protein_id="HAY9041734.1"
                     /translation="MSISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLV
                     GTLFLVARIWDAINDPIMG"
BASE COUNT         3987 a         4002 c         4350 g         4183 t
ORIGIN      
        1 tttcttgcag taattataaa agccgaaaac agaactcaaa aacaatctgg ctaaataaaa
       61 gtaacaaaat ttgctttaag gaagaatttt ctatgtacac acagaccctg tatgagttaa
      121 gtcaggaggc tgaacgcctg ttacagcttt ctcgccaaca gttgcagtta ctggaaaaaa
      181 tgcctctctc tgtacccgga gacgatgcgg cacaactggc tttaccctgg agtcagccta
      241 atatcgccga acgttacgcg atgctgaata atgagttgcg taaaatttcc cgactggaaa
      301 tggtgctggc gattgtcggt actatgaaag cagggaaatc aaccaccatt aatgccattg
      361 ttggtacgga ggttctgcct aatcgtaatc gcccaatgac tgcgctgccg acgcttattc
      421 gccatacgcc cgggcaaaag gaaccggtac tgcatttttc acatgtcgcg ccaatcgatt
      481 gtttaattca acaattacaa cagcgcctgc gtgattgcga tattaagcat ctgaccgatg
      541 tgctggaaat agataaagat atgcgtgcgc ttatgcagcg gatcgaaaat ggcgtcgctt
      601 tcgaaaaata ttatctgggt gcccagccta tttttcattg tctgaaaagt ttgaatgatt
      661 tagtgcgact ggcgaaggcg ctggacgtcg attttccttt ttctgcttac gccgccattg
      721 agcatattcc cgtgattgaa gtggagtttg tccatctggc ggggctggaa agttatcccg
      781 gtcagttgac gttactggat acccccgggc caaatgaagc cgggcaaccg catctgcaaa
      841 aaatgcttaa ccagcagctg gcacgcgcct cggcggtact ggcggtgctg gattatacgc
      901 aactgaaatc gatctccgat gaagaggtcc gtgaggcgat tttggcggtg gggcaatcgg
      961 tgccgctgta tgtgctggtc aataagttcg atcaacagga tcgtaacagt gacgacgccg
     1021 accaggtgcg ggcactgatt tccgggacgc tgatgaaagg ctgtattacg ccacagcaga
     1081 tatttccggt gtcgtcgatg tggggctacc tggcgaatcg ggcgcgctat gagttagcca
     1141 acaacggtaa gttaccagcg ccagagcaac aacgctgggt ggaagatttt gcccatgccg
     1201 cgctcggcag gcgctggcgt catgccgatc tggcggacct cgaacatatt cgtcatgctg
     1261 ccgatcagtt gtgggaagat tcgctgttcg cccagccaat tcaggcgttg cttcatgccg
     1321 cttacgctaa cgcctcattg tatgctctgc gatctgctgc gcataaactg ttgaattacg
     1381 cgcagcaggc gcgggaatac ctggattttc gtgcgcacgg gttaaacgtc gcttgtgaac
     1441 aattgcggca aaatatccat caggtcgaag aaagtttgca gctattgcaa ctcaatcagg
     1501 cgcaggtgag cggcgagatt aaacatgaaa tcgagctggc cctgacctcc gccaaccact
     1561 ttctgcgtca acagcaagat gcgctgaatg cgcagttagc cgccttgttt caggatgatt
     1621 cggagccgtt aagcgagatt cgtacctgct gtgagacact gttacagacg gcgcagaaca
     1681 ccatcagtcg cgactttacg ctgcgttttg ccgagcttga atccaccctt tgccgggtgt
     1741 taaccgatgt tattcggccc attgagcaac aagtcaaaat ggaattgagc gagtcagggt
     1801 ttcgtcctgg gtttcatttt cctgtttttc acggagtagt tccccacgtc aacactcgcc
     1861 agctgttcag tgaagtcatt tcgcgccagg aggcaacgga cgagcagagc acgcgtttag
     1921 gcgttgtgcg tgagactttt tcgcgctggt tgaatcagcc cgactgggga cggggaaatg
     1981 agaaatcccc gacagaaacg gttgattaca gtgtgttgca acgagcatta agcgcagaag
     2041 tcgatcttta ttgccaacaa atggctaaag ttctggcaga gcaggtcgat gaatctgtta
     2101 cggcaggcat gaatactttt ttcgctgagt tcgcttcatg tttgacggaa ttacagacgc
     2161 gtttacgcga aagcctggct ctgcgtcaac aaaatgaatc ggtggtcagg ctgatgcagc
     2221 agcaattgca gcagactgtg atgactcacg gctggattta caccgacgcc cagctgttac
     2281 gcgatgatat tcaaacactt ttcacggcag aacgatattg accaagacgt tactggacgg
     2341 ccccggtcgc gtgctggagt cggtttatcc ccgcttttta gtggatctgg cgcagggcga
     2401 tgatgcccgc cttccacaag cccatcagca gcagtttcgt gaacgactga tgcaggaact
     2461 tctttcgcgt gtgcagcttc agacatggac gaacggcggc atgttaaatg cgccgcttag
     2521 cctgcgactg acaatggtgg aaaaactggc gtcgatgctg gatcccggtc atctggcgct
     2581 gacgcagatc gcgcagcatc tggcgctgct gcaaaaaatg gatcaccgcc agcactctgc
     2641 tttcccggag ctcccccagc aaattgccgc cttgtatgag tggttttcag cccgttgtcg
     2701 ctggaaggaa aaggcgttaa cgcaacgagg ccaggcctac tggtgcaggc aggtgatcag
     2761 agcgagcaaa tttttacccg ctggcgtgct ggggcgtata acgcctggtc gttgcctggg
     2821 cgctgtttta tcgttctcga agagttgcgt tggggggcat ttggcgatgc ctgtcgtctg
     2881 ggaagcccgc aagcggtggc gttgctgctg ggtgatttgc gcgtgaaagc gacacaacat
     2941 ctggcagaga gtatcaatgc ggccccgacc acgcgtcact attaccatca gtggtttgcc
     3001 tcttcgaccg ttccgacggg cggggatcat gctgattttt taagttggct gggaaagtgg
     3061 accacggcag ataaacaacc cgtttgctgg tcagtgaccc aacgttggca aactgtcgcg
     3121 ctggggatgc cacgactctg ttcagcgcag cgtttggtgg gggcaatggt cgaggaaatc
     3181 ttctctgtaa atttggcgta aataatcagt tacatcaatg agtcctaaac gaaatccatg
     3241 cgtgaagttg atcacaaatt taaatactgg tagggtaaaa aggtcattaa ctgcccaatt
     3301 caggcgtcaa ctggtttgat tgtacattcc ttaaccggag ggtgtaagca aacccgctac
     3361 gcttgttaca gagattgcat cctgcaattc ccgctcccct tttgcggccg tcgcgctgat
     3421 ttttctggcg tttgcggaaa tgggccaact ctgcgaggaa agctatgctg aaaaggaaaa
     3481 aagtaaaacc gattaccctt cgtgatgtca ccattattaa tgacagtaaa ctgcgtaaag
     3541 ccattaccgc agcatcactg ggtaatgcaa tggaatggtt cgattttggt gtttatggtt
     3601 ttgttgctta cgcattaggt aaagtttttt tcccgggggc tgaccccagc gtgcagatgg
     3661 ttgctgcact tgccactttc tccgttccct ttctgattcg accgcttggc ggactcttct
     3721 ttggtatgtt gggcgataaa tatggtcgcc agaagatcct cgctatcact attgtgatta
     3781 tgtcgatcag tacgttctgt attggcttaa taccgtccta cgacacgatt ggtatttggg
     3841 caccgattct gctgttgatc tgtaagatgg cacaaggttt ctcggtcggc ggtgaatata
     3901 ccggggcgtc gatatttgtt gcggaatact cccctgaccg taaacgtggc tttatgggca
     3961 gctggctgga cttcggttct attgccgggt ttgtgctggg tgcgggcgtg gtggtgttaa
     4021 tttcgaccat tgtcggcgaa gcgaacttcc tcgactgggg ctggcgtatt ccgttcttta
     4081 ttgctctgcc gttagggatt atcgggcttt acctgcgcca tgcgctggaa gaaactccgg
     4141 cgttccagca gcatgttgat aaactggaac agggcgaccg cgaaggtttg caggatggcc
     4201 cgaaagtctc gtttaaagag attgccacta aatactggcg cagcctgttg acatgtattg
     4261 gtctggtaat tgccaccaac gtgacttact acatgttgct gacctatatg ccgagttatt
     4321 tgtcgcataa cctgcattac tccgaagacc acggggtgct gattattatc gccattatga
     4381 tcggtatgct gtttgtccag ccggtgatgg gcttgctgag tgaccgtttt ggccgtcgtc
     4441 cgtttgtgct acttggtagt gttgccctgt ttgtgttggc gatcccggcg tttattctga
     4501 ttaacagtaa cgtcatcggc ctgatttttg ccgggttact gatgctggcg gtgatcctta
     4561 actgctttac gggcgttatg gcttctacct tgccagcgat gttcccgacg catatccgtt
     4621 acagcgcgct ggcggcggca tttaatattt cggtgctggt tgccggtctg acgccaacac
     4681 tggcggcctg gctggtcgaa agctcgcaga atctgatgat gcctgcctat tacctgatgg
     4741 tagtggcggt gattggttta atcaccggcg taaccatgaa agagacggca aatcgtccgt
     4801 tgaaaggtgc gacaccggcg gcgtcagata tacaggaagc gaaggaaatt ctcgtcgagc
     4861 attacgataa tatcgagcag aaaatcgata atattgacca cgagattgcc gatttgcagg
     4921 cgaaacgtac ccgcctggtg cagcaacatc cgcgaattga tgaataagct gaaacggatg
     4981 gcctgatgtg acgctgtctt atcaggccaa ttgaactctt aaggttcact taatctctga
     5041 cgcgcatact ctcctccagg ttaacggagg agagtgcaat gaaaaaccgt gtttatatga
     5101 aagtttaact accgtgttca gcgtgctggt ggtcagcagc tttctttata tctggtttgc
     5161 cacgttctga tctttcttca gccgtaccta ggcccgcgtg ccggaagtct cttgccggtt
     5221 ttgcaggaaa aactgcccgt gatgcaactg tgtaatgcgg ctgacaatac ttaaccccag
     5281 accaatcccg ccataacggc tgtccatacg tacaaacgct ttactcaact ccccgcattt
     5341 actctcatca atacctggtc cttcatcttc aactgccatg accgctccgc catcttcttg
     5401 cagcttaatc ataatgttgc tgccttgcgg gctgtaacga tgggcgtttt ctaccaggtt
     5461 tcgcaataac atccgcagca gggttgcatc accctgaacg gtgatgtcgg cggcgctctc
     5521 tggcaatagc agggtttgct gtcgctggtc gagcatggta ctgagttcgt catacgaggg
     5581 gagaatgaca tcttccagca gttttacatg ttgataatta ccggaagaaa atgactgtcc
     5641 ggcacgcgcc agttgcagca gctgggagac gctctccatc atctgatcaa gccgtgccac
     5701 taacggtgct acatcaatgt gatgcgtttt cgccagcagt tccagatgca aacgcacccc
     5761 cgccagtggc gttcgcagtt cgtgcgcgac gtcagcggta aacaaccttt cgttatccag
     5821 cgtgctggtc aggcgactga ccagatcgtt caacgccgaa accaccgctt cgatttcgag
     5881 ggtggcgctg tgaatggcaa tgggcgttaa gttgtcggca gtgcgcgctt ccagctcttt
     5941 ttgcagctcc gccagcgggc gggtgatgcg gcgtaccgcc tgatagcaga taaatagcgt
     6001 caggctgacc ataaagacgc cggggacaat caggctggcg accgcctcgc ggatctcacg
     6061 catgatgtgg cgatcgttgt tgcgattgtc gcgtagcgcc tgctcaaaca gctgaatctg
     6121 ctcggtactt tcatgccata gccagaagac gctgatcagc tcaaacacca acaaaatggc
     6181 cccgatagtc aatatcagcc gttggcgcag cgatattggt cggcgcagaa aacgcatcag
     6241 attcaattag ttttcctcat tcgcgaccag catatagcca aagccgcgca cggtgcggat
     6301 acgggatttg cccactttgt cgcgcagatt gtggatatgc acttccaggg tgttggtcga
     6361 gggttcattg tcccagttat agatgtcgtt gtagagaatt tcccgatgta ccggactgcc
     6421 tgctttgagc attaaccgtg acagcagagc atattctttg ggcgtcagaa tcaactcttc
     6481 accgcccatc catacctgac ggcgacccat attcagcgtc agattgccaa caatcagctc
     6541 actttcgccc tgattattat ggcgtcgtag cagggcgcgg atacgggcgt gtaactcttc
     6601 cagcgcaaaa ggcttcacca gatagtcatc ggcaccgaca tccagcccgg cgattttgtc
     6661 ggtcagcgta tcgcgagcgg tgaggatcag taccggcagg gtatattttt tctgccggat
     6721 acgggcgaga aaatgcagtc catcttcgtc gggtaaccct aaatccagta ccaccaggct
     6781 gtaatgaccg gcttcaaggc tttgttccgc catccgcgcg gttgtcacgc catcgcacgc
     6841 gtagccttcg gtttgcgccg ccagaatcag tccctgcaat aacagcgtat cgtcttcaac
     6901 aatcagaatt ttcatttact cactctcctg caagtttgca gaatatcatc cgcagcctgg
     6961 taatacttcg tctcaacgcc agttaatccc aatagcgtgg agaataaatt gtcttgtgaa
     7021 tagtgttgcg tttgcgcctg tttttgcagg cagttctggt caacctgata ccgtttttga
     7081 taatcctccg acagccacag cagcatcggc acctgttttt ggctatccgg ggcgatggca
     7141 taaggcagac cgtgcagata gatgccattt tcacctaacg attcaccgtg gtcagaaaga
     7201 taaaccaggc tggtggtaaa tttatcctga tgttctttca gcagattaat cgctttatca
     7261 acaatatagt cgacgtaaac cagcgtgttg tcgtaagtgt tcaccagttg ctctttggta
     7321 caggtctgga tctcattggt gtcgcaggtt ggggtaaatt tcctgaactg cggcggatag
     7381 cggttgtaat aggtcggacc gtggctgccg atggtgtgta agacaatcac gccatcaccc
     7441 tgcaggttat tgatgtactc ttccagcccg tggaacagca cttcgtcata gcattcgccg
     7501 ttgatgcact gaccaggcag attcagcgcg gtgacgttct ggtgaggcac gcggtcgcag
     7561 gcacctttac agccgccatc gttgtcattc cacagcacgt tgatgcccgc tcgctgaatg
     7621 atatccagca cgccttcctg gtgctgtgcc agctcttctt tgtaatgctc acgcggcata
     7681 tccgagaaca tgcacggtac tgaaactgcc gttgccgtgc cgcaagatac ggtattaggg
     7741 aaatagacca cgttatcttt cgccagccgc gggttagttt cacgcgggta gccgttgagg
     7801 gagaagttct ccgcccgcga ggtttcgccg acaatcagga tggtcaaatt tttacgtttt
     7861 tcgttctgca ttaacgggtt gcggtgggcg tcttcaccaa ttcgcaccag cggtagattt
     7921 gccagtcgct gatgggagta ccatgaccag ctggcaacaa tgctgttaga ggggcttaag
     7981 gatttcacca gctctttgtt attgcggaac aacgaggcgt agtctttata aaacagtgcg
     8041 gcgaccagca aaatcagtag tacagaaacc agaatattgg ctccacggaa aagaacactg
     8101 cgcagacgcg aggtggcagg tttgattttt atccagcagg caatcagcgc agcaagcacg
     8161 ccgctgaatc ccagcgttaa taacatttgc ggtgtcatca gcgcataact ttctgccgga
     8221 gtggtatcaa taatattggc aatcatcgag cggtcgatga cgatgccgta agtcattatg
     8281 aaatattgtg cagccgcgcc aaccagaata aacaggcagg ccagtggtcg attaagccat
     8341 aagaaagagc ttagtgtcag gacaatatta atcacgctga aagcgacgac cggcatcgac
     8401 aagaaaacca gtacgttatg cagcgaatcc agcggcagcg cctgcaacac ctgtttaaaa
     8461 aaggcaatat tcaggcagat agagatataa aaagcggcca acaatagcca ggcgagtaaa
     8521 ttcaaagagg gtctttttag taggcgcttc aacatcacgg tgtttccatc gaacaaagtg
     8581 cgcatatgct cgcaaagcaa aattaagcca accttaagtt cttaaggttg gcttttatgt
     8641 ttgctggatt aaggggaatt aatctttgct tattggtgca tctaagggat acgggttttt
     8701 atgtagccgg ttgtaattca gcgcatacat ggcggtgatg accatcaggg tgacaaatga
     8761 ccacataacc tctttcgctc cggaccccac cacggcccag atgcagtaga ggaaggcaat
     8821 ggtagtaact gccagatatg ccgggcgtgc tttaccaaag tgaccgtgtc cgagcagcag
     8881 taacgccgca caggtgtaaa gatatggcac cagtgtaaag atgaccgaga cggaagaaac
     8941 cagaccgaac tctttggtcg cgtttggtga aatgctgctg agctggaaga tggtcatcaa
     9001 aataccgacg ataatcagcc ccgccactgg cgtacccgct ttatttacac gggcaaaaat
     9061 cggtgggaac agtccgtcat cggcagcggc tttcgccgtt tgacccgcca gcaacgtcca
     9121 gccgcccagt gaacctaagc aacccgcagc tgcgcagaag gaaacaatgg ccccgggggt
     9181 gtcacccaac gccatccgtg cggcatcacc gaatggcgaa gcagaaacgc gcagtgcggc
     9241 attagggatc atccccataa tcgcggtggt agaaagtaca tagcaaacgg cggcaatcaa
     9301 taccccacca atggtggcga tagggacatt gcgtttcggg tttttcacca cacctgcggc
     9361 aacggaggca ctttccacac cgatgaacga ccacagcgta acgttaaggg tactttgaat
     9421 tgcaccgaag gtacccaggc cgctgacgtt ccatgccgcc atataggttt caccacggaa
     9481 ccagaaccag ccaaatacgg caatcccgac gatggggatc agcgccagca cggtggcaac
     9541 tgcctgcaca cgggtgatca ttttcggacc aacaatgttc agcaggacga agatccacag
     9601 caccacgacg caggtgatgg ttaataccaa tggatctttc agaatcggga agaagtaact
     9661 taaatatcct acgccaatga ccaccatggc gatattgccg atccagcagg ccagccagta
     9721 gaggacgttg gtttgataac cgagaaacgg gccaaagcag cggcgggcgt aagcgtaaga
     9781 accaccagga cttgggtcga ggaacgacat tttggcgtat accatcgaga gccccagtgc
     9841 accgataatc gtcaccaacc atccataaat ggcaatcccg ccagtggagg ccaggtttgc
     9901 aggtaacaga aaaacacctg accccataat attccccgac accatcaggg tgacggggat
     9961 taagcccact ttgtgagcat cagcatccga agacataatt aaactcctgc gaaggcgagc
    10021 ttcgtgacaa taaattacgt catatcatac gcctgcattc gatagttgaa ttattatcga
    10081 ccgggttatc gctgatgccg ttattaatat agctcttcgt taaggttaaa aatcaggcga
    10141 cagtgcgttc tctgtgctga ctaacataat gcagcggcgt cataccgtag aagtctttaa
    10201 agacagaaat aaagtacgac gtactgttgt agccgcagga ctgtgatacc tgagagatat
    10261 ttttaccgtc catcattaat tcatttacgg cataacgcat gcggcaggtg gtgattattt
    10321 ggctataact ggtgttttcg cttttcagct ttttctttaa cagacttggg ctaagacata
    10381 aacaactggc taccatacta agattccagt ctttgtgaat atcgctttca ataatttgat
    10441 aaacgctgtc acttacacaa ttacgtaaca tatacatcat taatgaaagg aattttttac
    10501 tgtcgagaaa acgggatagc accgtgaata ataatgcgcg tgttcgttcc ttttctgact
    10561 cagtttctgc gggcatcatg ctgtgttgcg cggcaacgcg aaagacgtct ggcgtcaggc
    10621 atggcagggt gagtatgggc gtagcgctac gttgccatac tggtatttgc gagagatctt
    10681 tattcagaaa ccggaggtaa tctttgatga tgtcgtgact aatatgagca accaaagtgt
    10741 tgttaagaga ggagacgtcg ataatattat tttcacaatt taataacgcc atatggttag
    10801 ctttaaggct aataggttct ttcccattca cccttatcca gacatctttt tcagtcaata
    10861 aaacaataca aggttggtcg ctgcaaatcc tcatacatgt actcctgagt gcgaataaaa
    10921 gaccagttct cgctaaagca aagcgatacc gggaaatggt tatataattg tatgacgaat
    10981 ataaacatgc ataaaaataa cgagttttac taatattaca aatttttata gtaatttctc
    11041 atgtacatat ttttttacag ggtaaataac aggcaaaaaa aaagcgcggg gtggggccgc
    11101 gcaaaaagta tgacattttt gtttgcagca atttttatga aaacgttgcc atactcaaaa
    11161 ggcctaaggc caggcggcgt aatgttattt aaacaattac gccttcagcg gaatagtggt
    11221 tacgctttca cacacatagc gtggtaaata ccgtcaataa tttcagtccc ttcagtttcg
    11281 tgttcaaatc cagggaaatg gtggtcccag gattgcagcg agcgtaaata acttacttgc
    11341 ggactgtttt tatcgccgaa gttttcacca gacagcagca tcgggattcc tggcggatat
    11401 gggataactg agtttgccgc gatgcgtcct ggcagatttt caatggatac cagttcgaca
    11461 ttgttgtcga caatcgcgtt gtacgcttca cgcggggtga tttccgccac cggcaggccg
    11521 gaataggctt cgttcaaccg tgcgccaggg ttgttttctt tcagccaggc aaacatggtg
    11581 tcacccagat cgtgaatccc catgttcgcg taagtgtcag gatattgttc aacaagttcc
    11641 ggcatcacct gcgccagcgg tgtgttggcg tcatagtggc gtttgaagga gcaaagggtg
    11701 ttaaccagag tcccccattt cccacgggtt acgcccatag agaacaggaa cataatttgg
    11761 aagtcagtgg tgcgggtagg cacaatgccg tggcgaccaa gccaggcagt gaccagcgcc
    11821 gccggaacac cggtttcttc cagttcacca tcttcaccca ttcccggagc aaggatgctg
    11881 actttaatcg ggtcgagcat actccagtta tccggaatat ctttgaagcc gtgccagctt
    11941 tcgcccggat gcattaccca gtagtcctga acggtggtca gcagtttggt tggtgcgtca
    12001 gcaaagtcat aggttttgcc ggtttgtggg tcggtgacga cttctttgtt ccacggtttg
    12061 aagaaccagc taccgtcagc ggtgaactct ttatacagcc gcgccatcgc ctgacggaaa
    12121 tcaaccgctt cgtcgatcac ttcctgcgtc agtgacaggc cgctgttgcc gtccatcatc
    12181 gacaccgcca cgtcgttgga tgcgcagatg gcatacagcg gggaggtggt ggcatgcatc
    12241 atgtaggcct ggttgaagcg ggagaagtta atcgccccac gaccttcacg tacatgaata
    12301 taagaagcct gtgaaagcgc attcagcagt ttgtgggtgg agtgggtggc gaaaacggta
    12361 ggaccgttgt gatcgccagg ttcgccgcgc atggcatagt gatcggcata gatcgggttg
    12421 aaacgtgcat agccgtacca ggcttcgtca aagtgcagac gatcggaggt tttttccagc
    12481 agatcctgcg cttctttagc gttataacac acgccgtcat aggtgcagtt ggtcaccacg
    12541 cagtaagacg gtttttgccc ggctttgtct ttagtcagcg ggctttcact gattttcttc
    12601 tgcaaggttt caggttgcat ttcctgcgga tagattggcc cgataatgcc gtagcggttg
    12661 cggcttggca ccatgtagac cggtttcgcg cctgtcagca tcaagccttg ttcgatggat
    12721 ttatggcagt tacggtcaac gaccacgaca tcgttatcgg tcatgcaagc ctgcatgatg
    12781 gtgcggttag agccggaagt accgacgact accgaccagg agcgatcggc accaaatacg
    12841 cgtgcggcat atttttcgct ttcgccaaat gcgccagtat ggtcaagcaa agaaccgagg
    12901 gaagttcgtt cgatgcccat atcggtgcgg aacagatttt ctccatagta gtcatggtag
    12961 aaacgtccgg cgggtgtttt ggtaaaacca acgccgccct ggtggcctgg cgctgcccag
    13021 gaatattcat ggatgtcgct atacttcatc agcgcgctga acagtggcgg caacagctgc
    13081 tggcggtagc gggtcatcgc ggcaacggcg cgtccggcga taaagtcggt ggtatcttcc
    13141 agaatccagg cgaattcatc gacaagctcc agcaggtcgc gatccattgc ggcgagggct
    13201 ttttcccgat cgcccaacag gaagaccggc acgttttgtt ggcgctcatg aagcttaccg
    13261 atcaattgtc tgacgttttg atgttcgtcc ggatgttcca tttgatagct gaacatcagg
    13321 cagtcaatgg cttcgtttga agagagaatg gcaaaaccat catcaaagga ggtggattta
    13381 atcacggtaa cattttgctg gcttaaagca tctgccagac gctcaacggc gttaccgacc
    13441 caggtgtctt gatggagaaa ctcgctttca acaattaata ctttcatcat tgcttacccg
    13501 gttatgaagg aatcttcgtt gcgggcaagt atcttccggc cttttcgggc tgtaaagcgc
    13561 gtgaaaaaca aacatttttg aaatatttat ttttataaac aatgcgttat gtgattattt
    13621 taaattattt tcactgcttg ttatcgacgg ctaaactatt tttttggctg atactgatat
    13681 cgtctttagc cgggaaacgt ctggcggcgc tgttggctaa gtttgcggta ttgttgcggc
    13741 gacatgccga catatttgcc gaacgtgctg taaaaacgac tacttgaacg aaagcctgcc
    13801 gtcagggcaa tatcgagaat acttttatcg gtatcgctca gtaacgcgcg aacgtggttg
    13861 atgcgcatcg cggtaatgta ctgtttcatc gtcaattgca tgacccgctg gaatatcccc
    13921 attgcatagt tggcgttaag tttgacgtgc tcagccacat cgttgatggt cagcgcctga
    13981 tcatagtttt cggcaataaa gcccagcatc tggctaacat aaaattgcgc atggcgcgag
    14041 acgctgtttt tgtgtgtgcg cgaggtttta ttgaccagaa tcggttccca gccagagagg
    14101 ctaaatcgct tgagcatcag gccaatttca tcaatggcga gctggcgaat ttgctcgttc
    14161 ggactgttta attcctgctg ccagcggcgc acttcaaacg ggctaagttg ctgtgtggcc
    14221 agtgatttga tcatcatgcc gtgagtgacg tggttaatca ggtctttatc cagcggccag
    14281 gagagaaaca gatgcatcgg cagattaaaa atcgccatgc tctgacaggt tccggtatct
    14341 gttagttggt gcggtgtaca ggcccagaac agcgtgatat gaccctgatt gatattcact
    14401 ttttcattgt taatcaggta ttccacatcg ccatcgaaag gcacattcac ttcgacctga
    14461 ccatgccagt ggctggtggg catgatatgc ggtgcgcgaa actcaatctc catccgctgg
    14521 tattccgaat acagcgacag cgggctgcgg gtctgttttt cgtcgctgct gcacataaac
    14581 gtatctgtat tcatggatgg ctctctttcc tggaatatca gaattatggc aggagtgagg
    14641 gaggatgact gcgagtggga gcacggtttt caccctcttc ccagagaggc gaggggagcg
    14701 tccgagcatc atgaggccga aaactctgct tttcaggtaa cttattacca taaactcaga
    14761 tttactgctg cttcacgcag gatctgagtt tatgggaatg ctcaacctgg aagccggagg
    14821 ttttctgcag attcgcctgc catgatgaag ttattcaagc aagccaggag atctgcatga
    14881 tgactgcacc caaaattaca tttatcggcg ctggttcgac gattttcgtt aaaaatattc
    14941 ttggtgatgt gttccatcga gaggcgctga aaacggcgca tattgccctg atggacattg
    15001 atcccacccg cctggaagag tcgcatattg tggtgcgtaa gctgatggat tcagcagggg
    15061 ccagcggcaa aatcacctgc cacacccaac agaaagaagc cttacaggat gccgattttg
    15121 tcgtggtggc atttcagatt ggcggttatg aaccttgcac ggtgactgat ttcgaggtct
    15181 gtaagcggca tggtctggaa caaaccattg ccgatacgtt ggggccgggc ggtattatgc
    15241 gcgcgctacg taccattccg catctgtggc aaatttgcga ggacatgacg gaagtctgcc
    15301 ccgatgccac attgctcaac tacgttaacc caatggcgat gaatacctgg gcgatgtatg
    15361 cccgctatcc gcatatcaaa caggtagggc tgtgccattc ggtgcaggga acggcggaag
    15421 agctggcgcg tgacctcaat atcgatccgt ccacgctgcg ttaccgttgc gctggtatca
    15481 accatatggc gttttacctg gaactggagc gtaaaaccgc cgacggcagt tacgtgaatc
    15541 tctacccgga actgctggcg gcttatgaag cagggcaggc accgaagcca catattcatg
    15601 gtaatactcg ctgccagaat attgtgcgct acgaaatgtt caaaaagctg ggctacttcg
    15661 tcacggaatc gtcagaacat tttgccgaat atacgccgtg gtttattaag ccaggtcgtg
    15721 aggatttgat tgagcgttat aaagtaccgc tggatgagta cccgaaacgc tgcgtcgagc
    15781 agctggcgaa ctggcataaa gagctggagg agtataaaaa cgcctcccgg attgatatta
    15841 aaccgtcacg ggaatatgcc agcacaatca tgaacgctat ctggactggc gagtcgagtg
    15901 tgatttacgg caacgtccgt aacgatggtt tgattgataa cctgccacaa ggatgttgcg
    15961 tggaagtagc ctgtctggtt gatgctaatg gcattcagcc gaccaaagtc ggtacgctac
    16021 cttcgcatct ggccgccctg atgcaaacca acatcaacgt acagacgctg ctgaccgaag
    16081 ctattcttac ggaaaatcgc gaccgtgttt accacgccgc gatgatggac ccgcatactg
    16141 ccgccgtgct gggcattgac gaaatatatg ctcttgttga cgacctgatt gccgcccacg
    16201 gcgactggct gccaggctgg ttgcaccgtt aaaacgcgac taaacgctac tgcgccgggg
    16261 gatttattcc ggcgcacacc tctgacgata ccaataacag aaggcgggcg ttggtaacag
    16321 cgacccgata ccctatgagc atttcaatga ctacaaaact cagttatgga tttggagcgt
    16381 tcgggaagga ttttgcgatc ggcattgtgt atatgtacct catgtattac tacaccgatg
    16441 tcgttgggct gtctgtgggt ttggtcggta ctttgtttct ggtggcgagg atctgggatg
    16501 ctattaacga tccgattatg gg
//
LOCUS       DADMJB010000093        16472 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.093, whole genome shotgun sequence.
ACCESSION   DADMJB010000093 DADMJB010000000
VERSION     DADMJB010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16472)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16472)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16472
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.093"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(118..1401)
                     /gene="gltA"
                     /locus_tag="JN078_002574"
     CDS             complement(118..1401)
                     /gene="gltA"
                     /locus_tag="JN078_002574"
                     /EC_number="2.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (Si)-synthase"
                     /protein_id="HAY9041735.1"
                     /translation="MADTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFD
                     PGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYD
                     EFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREI
                     AAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILER
                     AMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKML
                     EEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKD
                     DLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGW
                     IAHWSEMHSDGMKIARPRQLYTGYEKRDFKSDIKR"
     gene            complement(1607..1714)
                     /locus_tag="JN078_002575"
     CDS             complement(1607..1714)
                     /locus_tag="JN078_002575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041736.1"
                     /translation="MRKSYEVGISPKINLCNSVEVLTNSFGTVISGRQV"
     gene            2095..2499
                     /gene="sdhC"
                     /locus_tag="JN078_002576"
                     /gene_synonym="cybA"
                     /gene_synonym="dhsC"
     CDS             2095..2499
                     /gene="sdhC"
                     /locus_tag="JN078_002576"
                     /gene_synonym="cybA"
                     /gene_synonym="dhsC"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000263334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase cytochrome b556 subunit"
                     /protein_id="HAY9041737.1"
                     /translation="MWALFMIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFV
                     AVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFG
                     YLEETFEAGKRSAKISFVITVVLSLLAGVLVW"
     gene            2493..2840
                     /gene="sdhD"
                     /locus_tag="JN078_002577"
                     /gene_synonym="cybS"
                     /gene_synonym="dhsD"
     CDS             2493..2840
                     /gene="sdhD"
                     /locus_tag="JN078_002577"
                     /gene_synonym="cybS"
                     /gene_synonym="dhsD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase membrane anchor subunit"
                     /protein_id="HAY9041738.1"
                     /translation="MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELT
                     YEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALV
                     VYVIYGFVVVWGV"
     gene            2840..4606
                     /gene="sdhA"
                     /locus_tag="JN078_002578"
     CDS             2840..4606
                     /gene="sdhA"
                     /locus_tag="JN078_002578"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HAY9041739.1"
                     /translation="MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS
                     HTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHM
                     GLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTI
                     FSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHIN
                     TGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERY
                     APNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELS
                     RTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACV
                     SVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNN
                     RNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNT
                     QRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESM
                     TRRSVNMEPKLRPAFPPKIRTY"
     gene            4622..5338
                     /locus_tag="JN078_002579"
     CDS             4622..5338
                     /locus_tag="JN078_002579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HAY9041740.1"
                     /translation="MRLEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLKE
                     KDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRD
                     LVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCP
                     SFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPK
                     GLNPTRAIGHIKSMLLQRNA"
     gene            5639..8440
                     /gene="sucA"
                     /locus_tag="JN078_002580"
     CDS             5639..8440
                     /gene="sucA"
                     /locus_tag="JN078_002580"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HAY9041741.1"
                     /translation="MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRST
                     FQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFR
                     GHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEAL
                     KQTYCGPIGAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLG
                     AKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQ
                     DLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSV
                     RARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQV
                     GFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFI
                     DLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNL
                     YRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPE
                     AVEMQSRVAKIYSDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFF
                     HRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIW
                     EAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQL
                     CAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT
                     FLPAIGEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAM
                     QEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGY
                     MSVHQKQQQDLVNDALNVE"
     gene            8455..9672
                     /gene="odhB"
                     /locus_tag="JN078_002581"
     CDS             8455..9672
                     /gene="odhB"
                     /locus_tag="JN078_002581"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HAY9041742.1"
                     /translation="MSSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDK
                     VVLEVPASADGILDAVLEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQ
                     QASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKSPAKESAP
                     AAAAPAAQPALAARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRK
                     QYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTP
                     RGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMS
                     TPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLITIK
                     ELLEDPTRLLLDV"
     gene            9948..11114
                     /gene="sucC"
                     /locus_tag="JN078_002582"
     CDS             9948..11114
                     /gene="sucC"
                     /locus_tag="JN078_002582"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HAY9041743.1"
                     /translation="MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWV
                     VKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAAT
                     DIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPQLIHKVALDPLTGPMPYQG
                     RELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGA
                     DGNALFRQLDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIV
                     KLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKVVLVNIFGGIVRCDLIADGIIG
                     AVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEGK"
     gene            11114..11983
                     /gene="sucD"
                     /locus_tag="JN078_002583"
     CDS             11114..11983
                     /gene="sucD"
                     /locus_tag="JN078_002583"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HAY9041744.1"
                     /translation="MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKG
                     GTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPT
                     LDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYE
                     AVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEA
                     AAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRS
                     LADIGEALKTVLK"
     gene            complement(12087..12809)
                     /gene="mngR"
                     /locus_tag="JN078_002584"
     CDS             complement(12087..12809)
                     /gene="mngR"
                     /locus_tag="JN078_002584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-D-glycerate transport/metabolism system
                     transcriptional repressor MngR"
                     /protein_id="HAY9041745.1"
                     /translation="MGHKPLYRQIADRIREQIARGELKPGDALPTESALQTEFGVSRV
                     TVRQALRQLVEQQILESIQGSGTYVKEERVNYDIFQLTSFDEKLSDRHVDTHSEVLIF
                     EVIPADDFLQQQLQITAQDRVWHVKRVRYRKQKPMALEETWMPLALFPDLTWQVMENS
                     KYHFIEEVKKMVIDRSEQEIIPLMPTEEMSRLLNISQTKPILEKVSRGYLVDGRVFEY
                     SRNAFNTDDYKFTLIAQRKSSR"
     gene            12918..14894
                     /gene="mngA"
                     /locus_tag="JN078_002585"
     CDS             12918..14894
                     /gene="mngA"
                     /locus_tag="JN078_002585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS 2-O-a-mannosyl-D-glycerate transporter
                     subunit IIABC"
                     /protein_id="HAY9041746.1"
                     /translation="MVLFYRAHWRDYKNDQVRIMMNLTTLTHRDALRLNARFTSREEA
                     IHALTQRLAALGKISSTEQFLEEVYRRESLGPTALGEGLAVPHGKTAAVKEAAFAVAT
                     LSEPLQWEGVDGPEAVDLVVLLAIPPNEAGTMHMQLLTALTTRLADDEIRARIQSATT
                     PDELLSALDDKGGTQPSASFSNAPTIVCVPACPAGIAHTYMAAEYLEKAGRKLGVNVY
                     VEKQGANGIEGRLTADQLNSATACIFAAEVAIKESERFNGIPALSVPVAEPIRHAEAL
                     IQQALTLKRSDETRTVQQDTQPVKSVKTELKQALLSGISFAVPLIVAGGTVLAVAVLL
                     SQIFGLQDLFNEENSWLWMYRKLGGGLLGILMVPVLAAYTAYSLADKPALAPGFAAGL
                     AANMIGSGFLGAVVGGLIAGYLMRWVKNHLRLSSKFNGFLTFYLYPVLGTLGAGSLML
                     FVVGEPVAWINNSLTAWLNGLSGSNALLLGAIFGFMCSFDLGGPVNKAAYAFCLGAMV
                     NGVYGPYAIFASVKMVSAFTVTASTMLAPRLFKEFEIETGKSTWLLGLVGITEGAIPM
                     AIEDPLRVIGSFVLGSMVTGAIVGAMNIGLSTPGAGIFSLFLLHDNGAGGVMAAIGWF
                     GAALVGAAISTAILLIWRRHAVKHGNYLTDGVMP"
     gene            14912..>16472
                     /locus_tag="JN078_002586"
     CDS             14912..>16472
                     /locus_tag="JN078_002586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HAY9041747.1"
                     /translation="MKAVSRVHITPHMHWDREWYFTTEESRILLVNNMEEILCRLEQD
                     NEYKYYVLDGQTAILEDYFAVKPENKDRVKKQVEAGKLIIGPWYTQTDTTIVSAESIV
                     RNLMYGMRDCLAFGEPMKIGYLPDSFGMSGQLPHIYNGFGITRTMFWRGCSERHGTDK
                     TEFLWQSSDGSEVTAQVLPLGYAIGKYLPTDENGLRKRLDSYFDVLEKASVTKEILLP
                     NGHDQMPLQQNIFEVMDKLREIYPQRKFVMSRFEEVFEKIEAQRESLATLKGEFIDGK
                     YMRVHRTIGSTRMDIKIAHARIENKIVNLLEPLATLAWTLGFEYHHGLLEKMWKEILK
                     NHAHDSIGCCCSDKVHREIVARFELAEDMADNLLRFYMRKIADNMPQSDADKLVLFNL
                     MPWPREEVINTTVRLRASQFNLRDDRGQPVPYFIRHAREIDPGLIDRQIVHYGNYDPF
                     MEFDIQINQIVPSMGYRTLYIEANQPGNVIAAKSDAEGILENAFWQIALNEDGSLQLV
                     DKDSGVRYDRVL"
BASE COUNT         3954 a         4134 c         4485 g         3899 t
ORIGIN      
        1 aatatatgaa tgtccgatag tggattttat ttttacaatt ttttgtgttt aggcatataa
       61 aaattaaccc gccatttgaa cggcgggtta aaatatttac aacttagcaa tcaaccatta
      121 acgcttgata tcgcttttaa agtcgcgttt ttcatatcct gtatacagct gacgcggacg
      181 ggcaatcttc ataccgtcac tgtgcatttc gctccagtgg gcgatccagc caacggtacg
      241 tgccattgcg aaaatgacgg tgaacatgga agacggaata cccatcgctt tcaggatgat
      301 accagagtag aaatcgacgt tcgggtacag tttcttctcg ataaagtacg ggtcgttcag
      361 cgcgatgttt tccagctcca tagccacttc cagcaggtca tctttggtgc ccagctcttt
      421 cagaacttca tggcaggttt cacgcattac ggtggcgcgc gggtcgtaat ttttgtacac
      481 gcggtgaccg aagcccatca ggcggaaaga atcattttta tctttcgcac gacgaacaaa
      541 ttccggaatg tgtttaacgg agctaatttc ttccagcatt ttcagcgccg cttcgttagc
      601 accaccgtgc gcaggtcccc acagtgaagc aatacctgct gcgatacagg caaacgggtt
      661 cgcacccgaa gagccagcgg tacgcacggt ggaggtagag gcgttctgtt catggtcagc
      721 gtgcaggatc agaatacggt ccatagcacg ttccagaatc ggattaactt catacggttc
      781 gcacggcgtg gagaacatca tattcaggaa gttaccggca taggagagat cgttgcgcgg
      841 ataaacaaat ggctgaccaa tggaatactt gtaacacatc gcggccatgg tcggcatttt
      901 cgacagcagg cggaacgcgg caatttcacg atgacgagga ttgttaacat ccagcgagtc
      961 gtgatagaac gccgccagcg cgccggtaat accacacatg actgccattg gatgtgagtc
     1021 gcgacggaaa gcgtggaaca gacgggtaat ctgctcgtgg atcatggtat gacgggtcac
     1081 cgtagtttta aattcgtcat actgttcctg agtcggtttt tcaccattca gcaggatgta
     1141 acaaacttcc aggtagttag aatcggtcgc cagctgatcg atcgggaaac cgcggtgcag
     1201 caaaatacct tcatcaccat caataaaagt aattttagat tcgcaggatg cggttgaagt
     1261 gaagcctggg tcaaaggtga acacaccttt tgaaccgaga gtacggatat caataacatc
     1321 ttgacccagc gtgcctttca gcacatccag ttcaacagct gtgtccccgt tgagggtgag
     1381 ttttgctttt gtatcagcca tttaaggtct ccttagcgcc ttattgcgta agactgccgg
     1441 aacttaaatt tgccttcgca catcaacctg gctttacccg tttgttattt ggctcgccgc
     1501 tctgtgaaag aggggaaaac ctgggtacag agctctgggc gcttgcaggt aaaggatcca
     1561 ttgatgacga ataaatggcg aatcaagtac ttagcaatcc gaattattaa acttgtctac
     1621 cactaataac tgtcccgaat gaattggtca atacttccac actgttacat aagttaatct
     1681 taggtgaaat accgacttca taacttttac gcattatatg cttttcctgg taatgtttgt
     1741 aacaactttg ttgagtgatt gtcaaattag atgattaaaa attaaataaa tgttgttgtc
     1801 gtgacctgga tcactgttca ggataaaacc cgacaaacta tatgtaggtt aattgtaatg
     1861 attttgtgaa cagcctatac tgccgccagg tctccggaac accctgcaat cccgagccac
     1921 ccagcgttgt aacgtgtcgt tttcgcatct ggaagcagtg ttttgcatga cgcgcagtta
     1981 tagaaaggac gctgtctgac ccgcaagcag accggaggaa ggaaatcccg acgtctccag
     2041 gtaacagaaa gttaacctct gtgcccgtag tccccaggga ataataagaa cagcatgtgg
     2101 gcgttattca tgataagaaa tgtgaaaaaa caaagacctg ttaatctgga cctacagacc
     2161 atccggttcc ccatcacggc gatagcgtcc attctccatc gcgtttccgg tgtgatcacc
     2221 tttgttgcag tgggcatcct gctgtggctt ctgggtacca gcctctcttc ccctgaaggt
     2281 ttcgagcaag cttccgcgat tatgggcagc ttcttcgtca aatttatcat gtggggcatc
     2341 cttaccgctc tggcgtatca cgtcgtcgta ggtattcgcc acatgatgat ggattttggc
     2401 tatctggaag aaacattcga agcgggtaaa cgctccgcca aaatctcctt tgttattact
     2461 gtcgtgcttt cacttctcgc aggagtcctc gtatggtaag caacgcctcc gcattaggac
     2521 gcaatggcgt acatgatttc atcctcgttc gcgctaccgc tatcgtcctg acgctctaca
     2581 tcatttatat ggtcggtttt ttcgccacca gtggcgaact gacatatgaa gtctggatcg
     2641 gtttcttcgc ctctgcgttc accaaagtgt tcaccctgct ggcgctgttt tctatcttga
     2701 ttcatgcctg gatcggcatg tggcaggtgt tgaccgacta cgttaaaccg ctggcattgc
     2761 gcctgatgct gcaactggtg attgtcgttg cactggtggt ttacgtgatt tatggattcg
     2821 ttgtggtgtg gggtgtgtga tgaaattgcc agtcagagaa tttgatgcag ttgtgattgg
     2881 tgccggtggc gcaggtatgc gcgcggcgct gcaaatttcc cagagcggcc agacctgtgc
     2941 gctgctctct aaagtcttcc cgacccgttc ccataccgtt tctgcgcaag gcggcattac
     3001 cgttgcgctg ggtaataccc atgaagataa ctgggaatgg catatgtacg acaccgtaaa
     3061 agggtcggac tatatcggtg accaggacgc gattgaatat atgtgtaaaa ccgggccgga
     3121 agcgattctg gaactcgaac acatgggcct gccgttctcg cgtcttgatg atggtcgtat
     3181 ctatcaacgt ccgtttggcg gtcagtcgaa aaacttcggc ggcgagcagg cggcacgcac
     3241 tgcggcggcg gctgaccgta ccggtcacgc actgttgcac acgctttatc agcagaacct
     3301 gaaaaaccac accaccattt tctccgagtg gtatgcgctg gatctggtga agaaccagga
     3361 tggcgcggtg gtgggttgta ctgcactgtg catcgaaact ggtgaagtgg tttatttcaa
     3421 agcccgcgct accgtgctgg cgactggcgg ggcagggcgt atttatcagt ccaccactaa
     3481 cgcccacatt aacactggcg acggcgtcgg catggctatc cgcgcaggcg taccggtgca
     3541 ggatatggaa atgtggcagt tccacccgac cggtattgcc ggtgcgggcg tactggtcac
     3601 cgaaggttgc cgtggtgaag gcggttatct gctgaacaaa catggcgaac gctttatgga
     3661 gcgttatgcg ccgaacgcca aagacctggc gggccgtgat gtggtggcgc gttccatcat
     3721 gatcgaaatc cgtgaaggtc gcggctgtga tggtccgtgg gggccacacg cgaaactgaa
     3781 actcgaccac ctgggtaaag aagttctcga atcccgtctg ccgggcatcc tggaactctc
     3841 ccgtaccttc gctcacgtcg atccggtgaa agagccgatc ccggttatcc caacctgtca
     3901 ttacatgatg ggcggtattc cgaccaaagt gaccggtcag gcgctgactg tgaatgagaa
     3961 aggcgaagat gtggttgttc cgggactgtt tgccgttggt gaaatcgctt gtgtatcggt
     4021 acacggcgct aaccgtctgg gcggcaactc gctgctggac ctggtggtct ttggtcgtgc
     4081 ggcaggtctg catctgcaag agtctatcgc cgagcagggc gcattgcgcg atgccagcga
     4141 gtctgatgtt gaagcatctc tggatcgtct gaaccgctgg aacaataatc gtaacggtga
     4201 agatccggtg gcgattcgta aagcgctgca agaatgtatg cagcataact tctcggtctt
     4261 ccgtgaaggt gatgcgatgg cgaaagggct tgagcagttg aaagttatcc gcgagcgtct
     4321 gaaaaatgcc cgtctggatg acacttccag cgagttcaac acccagcgcg ttgagtgcct
     4381 ggaactggat aacctgatgg aaacggcgta tgcaacggct gtttctgcca acttccgtac
     4441 cgaaagccgt ggcgcgcata gccgcttcga cttcccggat cgtgatgatg aaaactggct
     4501 gtgccactcc ctgtatctgc cagagtcgga atccatgacg cgccgaagcg tcaacatgga
     4561 accgaaactg cgcccggcat tcccgccgaa gattcgtact tactaatgcg gagacaggaa
     4621 aatgagactc gagttttcaa tttatcgcta taacccggat gttgatgatg ctccgcgtat
     4681 gcaggattac accctggaag cggaagaagg tcgcgacatg atgctgctgg atgcgcttat
     4741 ccagctgaaa gagaaagatc ccagcctgtc gttccgccgc tcctgtcgtg aaggtgtgtg
     4801 cggttccgac ggtctgaaca tgaacggcaa gaatggtctg gcctgtatta ccccgatttc
     4861 ggcactcaac cagccgggca agaagattgt gattcgcccg ctgccaggtt taccggtgat
     4921 ccgcgatttg gtggtagaca tgggacaatt ctatgcgcaa tatgagaaaa ttaagcctta
     4981 cctgttgaat aatggacaaa atccgccagc tcgcgagcat ttacagatgc cagagcagcg
     5041 cgaaaaactc gacgggctgt atgaatgtat tctctgcgca tgttgttcaa cctcttgtcc
     5101 gtctttctgg tggaatcccg ataagtttat cggcccggca ggcttgttag cggcatatcg
     5161 tttcctgatc gatagccgtg ataccgagac tgacagccgc ctcgacggtt tgagcgatgc
     5221 attcagcgta ttccgctgtc acagcatcat gaactgcgtc agtgtatgtc cgaaggggct
     5281 gaacccgacg cgcgccatcg gccatatcaa gtcgatgttg ttgcaacgta atgcgtaaac
     5341 cgtaggcctg ataagacgcg caagcgtcgc atcaggcaac cagtgccgga tgcggcgtga
     5401 acgccttatc cggcctacaa gtcattaccc gtaggcctga taagcgcagc gcatcaggcg
     5461 taacaaagaa atgcaggaaa tctttaaaaa ctgcccctga cactaagaca gtttttaaag
     5521 gttccttcgc gagccactac gtagacaaga gctcgcaagt gaaccccggc acgcacatca
     5581 ctgtgcgtgg tagtatccac ggcgaagtaa gcataaaaaa gatgcttaag ggatcacgat
     5641 gcagaacagc gctttgaaag cctggttgga ctcttcttac ctctctggcg caaaccagag
     5701 ctggatagaa cagctctatg aagacttctt aaccgatcct gactcggttg acgctaactg
     5761 gcgttcgacg ttccagcagt tacctggtac gggagtcaaa ccggatcaat tccactctca
     5821 aacgcgtgaa tatttccgcc gcctggcgaa agacgcttca cgttactctt caacgatctc
     5881 cgaccctgac accaatgtga agcaggttaa agtcctgcag ctcattaacg cataccgctt
     5941 ccgtggtcac cagcatgcga atctcgatcc gctgggactg tggcagcaag ataaagtggc
     6001 cgatctggat ccgtctttcc acgatctgac cgaagcagac ttccaggaaa ccttcaacgt
     6061 cggttcattt gccagcggca aagaaaccat gaaactcggc gagctgctgg aagccctcaa
     6121 gcaaacctac tgcggcccga ttggtgccga gtatatgcac atcaccagca ccgaagaaaa
     6181 acgctggatc caacagcgta tcgagtctgg tcgcgcgact ttcaatagcg aagagaaaaa
     6241 acgcttctta agcgaactga ccgccgctga aggccttgaa cgttacctcg gcgcaaaatt
     6301 ccctggcgca aaacgcttct cgctggaagg cggtgacgcg ttaatcccga tgcttaaaga
     6361 gatgatccgc cacgctggca acagcggcac ccgcgaagtg gttctcggga tggcgcaccg
     6421 tggtcgtctg aacgtgctgg tgaacgtgct gggtaaaaaa ccgcaagact tgttcgacga
     6481 gttcgccggt aaacataaag aacacctcgg cacgggtgac gtgaaatacc acatgggctt
     6541 ctcgtctgac ttccagaccg atggcggcct ggtgcacctg gcgctggcgt ttaacccgtc
     6601 tcaccttgag attgtaagcc cggtagttat cggttctgtt cgtgcccgtc tggacagact
     6661 tgatgagccg agcagcaaca aagtgctgcc aatcaccatc cacggtgacg ccgcagtgac
     6721 cgggcagggc gtggttcagg aaaccctgaa catgtcgaaa gcgcgtggtt atgaagttgg
     6781 cggtacggta cgtatcgtta tcaacaacca ggttggtttc accacctcta atccgctgga
     6841 tgcccgttct acgccgtact gtactgatat cggtaagatg gttcaggccc cgattttcca
     6901 cgttaacgcg gacgatccgg aagccgttgc ctttgtgacc cgtctggcgc tcgatttccg
     6961 taacaccttt aaacgtgatg tcttcatcga cctggtgtgc taccgccgtc acggccacaa
     7021 cgaagccgac gagccgagcg caacccagcc gctgatgtat cagaaaatca aaaaacatcc
     7081 gacaccgcgc aaaatctacg ctgacaagct ggagcaggaa aaagtggcga cgctggaaga
     7141 tgccaccgag atggttaacc tgtaccgcga tgctctggat gctggcgatt gcgtagtggc
     7201 agagtggcgt ccgatgaaca tgcactcttt cacctggtcg ccgtacctca accacgaatg
     7261 ggacgaagag tacccgaaca aagttgagat gaagcgcctg caggagctgg cgaaacgcat
     7321 cagcacggtg ccggaagcag ttgaaatgca gtctcgcgtt gccaagattt atagcgatcg
     7381 ccaggcgatg gctgccggtg agaaactgtt cgactggggc ggtgcggaaa acctcgctta
     7441 cgccacgctg gttgacgaag gcattccggt tcgcctgtcg ggtgaagact ccggtcgcgg
     7501 taccttcttc caccgccacg cggtgatcca caaccagtct aacggttcca cttacacgcc
     7561 gctgcaacac atccataacg ggcagggcgc gttccgcgtc tgggactccg tactgtctga
     7621 agaagcagtg ctggcgtttg aatacggtta tgccaccgca gaaccacgca ctctgaccat
     7681 ctgggaagcg cagttcggtg acttcgctaa cggtgctcag gtggttatcg accagttcat
     7741 ctcctctggc gaacagaaat ggggccggat gtgtggtctg gtgatgttgc tgccgcacgg
     7801 ttatgaaggg caggggccgg agcactcctc cgcgcgtctg gaacgttatc tgcaactttg
     7861 tgctgagcaa aacatgcagg tgtgcgtacc gtctaccccg gcacaggttt accacatgct
     7921 gcgtcgtcag gcgctgcgcg ggatgcgtcg tccgctggtc gtgatgtcgc cgaaatccct
     7981 gctgcgtcat ccgctggcgg tttccagcct cgaagaactg gcgaacggca ccttcctgcc
     8041 agccatcggt gaaatcgacg agcttgatcc gaagggcgtg aagcgcgtag tgatgtgttc
     8101 tggtaaggtt tattacgacc tgctggaaca gcgtcgtaag aacaatcaac acgatgtcgc
     8161 cattgtgcgt atcgagcaac tctacccgtt cccgcataaa gcgatgcagg aagtgttgca
     8221 gcagtttgct cacgtcaagg attttgtctg gtgccaggaa gagccgctca accagggcgc
     8281 atggtactgc agccagcatc atttccgtga agtgattccg tttggggctt ctctgcgtta
     8341 tgcaggccgc ccggcctccg cctctccggc ggtagggtat atgtccgttc accagaaaca
     8401 gcaacaagat ctggttaatg acgcgctgaa cgtcgaataa ataaaggata cacaatgagt
     8461 agcgtagata ttctggtccc tgacctgcct gaatccgtag ccgatgccac cgtcgcaacc
     8521 tggcataaaa aacccggcga cgcagtcgta cgtgatgaag tgctggtaga aatcgaaact
     8581 gacaaagtgg tactggaagt accggcatca gcagacggca ttctggatgc ggttctggaa
     8641 gatgaaggta caaccgtaac gtctcgtcag atccttggtc gcctgcgtga aggcaacagc
     8701 gccggtaaag aaaccagcgc caaatctgaa gagaaagcgt ccactccggc gcaacgccag
     8761 caggcgtctc tggaagagca aaacaacgat gcgttaagcc cggcgatccg tcgcttgctg
     8821 gctgaacata acctcgacgc cagcgctatt aaaggcaccg gcgtgggtgg tcgtctgacc
     8881 cgtgaagatg tggaaaaaca tctggcgaaa tccccggcga aagagtctgc accggcagcg
     8941 gctgctccgg cggcgcaacc ggctctggct gcacgtagtg aaaaacgtgt cccgatgact
     9001 cgcctgcgta agcgtgtggc agagcgtctg ctggaagcga aaaactccac cgccatgctg
     9061 accacgttca acgaagtcaa catgaagccg attatggatc tgcgtaagca gtacggtgaa
     9121 gcgtttgaaa aacgccacgg catccgtctg ggctttatgt ccttctacgt gaaagcggtg
     9181 gttgaagccc tgaaacgtta cccggaagtg aatgcttcta tcgacggcga tgacgtggtt
     9241 taccacaact atttcgacgt cagcatggcg gtttctacgc cgcgcggcct ggtgacgccg
     9301 gttctgcgtg atgtcgatac cctcggcatg gcagacatcg agaagaaaat caaagagctg
     9361 gcagtcaaag gccgtgatgg caagctgacc gttgaagatc tgaccggtgg taacttcacc
     9421 atcaccaacg gtggtgtgtt cggttccctg atgtctacgc cgatcatcaa cccgccgcag
     9481 agcgcaattc tgggtatgca cgctatcaaa gatcgtccga tggcggtgaa tggtcaggtt
     9541 gagatcctgc cgatgatgta cctggcgctg tcctacgatc accgtctgat cgatggtcgc
     9601 gaatccgtgg gcttcctgat aacgatcaaa gagttgctgg aagatccgac gcgtctgctg
     9661 ctggacgtgt agtagtttaa gtttcacctg cactgtagac aggataaggc attatcgcct
     9721 tctccggcaa ttgaagcctg atgcgacgct taacgcgtct tatcaggcct acgggaagca
     9781 ccaatgtagg tcggataagg cgcttgcgcc gcatccgaca agcgatgcct gatgcgacac
     9841 ttacgcgtct tatcaggcct acaggtgacc gacaatgccc ggaggcgata cgaaatattc
     9901 ggtctacggt ttaaaagata acgattactg aaggatggac agaacacatg aacttacatg
     9961 aatatcaggc aaaacaactt tttgcccgct atggcttacc agcaccggtg ggttatgcct
    10021 gtactactcc gcgcgaagca gaagaagccg cttcaaaaat cggtgccggt ccgtgggtag
    10081 tgaaatgtca ggttcacgct ggtggccgcg gtaaagcggg cggtgtgaaa gttgtaaaca
    10141 gcaaagaaga catccgtgct tttgcagaaa attggctcgg caagcgtctg gtaacgtatc
    10201 aaacagatgc caatggccaa ccggttaacc agattctggt tgaagcagcg accgatatcg
    10261 ctaaagagct gtatctcggt gccgttgtag accgtagttc ccgtcgtgtg gtctttatgg
    10321 cctccactga aggcggcgtg gaaatcgaaa aagtggcgga agaaactccg cagctgatcc
    10381 ataaagttgc gcttgatccg ctgacaggcc cgatgccgta tcagggacgc gagctggcgt
    10441 tcaaactggg tctggaaggt aaactggttc agcagttcac caaaatcttc atgggtctgg
    10501 cgaccatttt cctggagcgc gacctggcgt tgatcgaaat caacccgctg gtcatcacca
    10561 aacagggtga tctgatttgc ctcgacggca aactgggcgc tgatggcaac gcactgttcc
    10621 gccagcttga tctgcgcgaa atgcgtgacc agtcgcagga agatccgcgt gaagcacagg
    10681 ctgcacagtg ggaactgaac tacgttgcgc tggacggtaa catcggttgt atggttaacg
    10741 gcgcaggtct ggcgatgggt acgatggaca tcgttaaact gcacggcggc gaaccggcta
    10801 acttccttga cgttggcggc ggtgcaacca aagaacgtgt aaccgaagcg ttcaaaatca
    10861 tcctctctga cgacaaagtg aaagtcgttc tggttaacat cttcggcggt atcgttcgtt
    10921 gcgacctgat cgctgacggt atcatcggcg cggtagcaga agtgggtgtt aacgtaccgg
    10981 tcgtggtacg tctggaaggt aacaacgccg aactcggcgc gaagaaactg gctgacagcg
    11041 gcctgaatat tattgcagca aaaggtctga cggatgcagc tcagcaggtt gttgccgcag
    11101 tggaggggaa ataatgtcca ttttaattga taaaaacacc aaggttatct gccagggctt
    11161 tactggtagc caggggactt tccactcaga acaggccatt gcatacggca ctaaaatggt
    11221 tggcggcgta accccaggta aaggcggtac tacccacctc ggcctgccgg tgttcaacac
    11281 cgtgcgtgaa gctgttgctg ctactggcgc taccgcttct gttatctacg taccagcacc
    11341 gttctgcaaa gactccattc tggaagctat tgatgcaggc atcaaactga ttatcaccat
    11401 cactgaaggc atcccgacgc tggatatgct gactgtgaaa gtgaaactgg acgaagccgg
    11461 cgttcgtatg atcggcccga actgcccggg cgttatcact ccgggtgaat gcaaaatcgg
    11521 tatccagccg ggtcacattc acaaaccggg taaagtgggt atcgtttccc gttccggtac
    11581 actgacctat gaagcggtta aacagaccac ggattacggt ttcggtcagt cgacctgtgt
    11641 tggtatcggc ggtgacccga tcccaggctc taactttatc gacatcctcg aaatgttcga
    11701 aaaagatccg cagaccgaag cgatcgtgat gatcggtgag atcggcggta gcgctgaaga
    11761 agaagcggca gcgtacatca aagagcacgt taccaagcca gttgtaggtt acatcgctgg
    11821 tgtgactgcg ccgaaaggca aacgtatggg ccacgcgggt gcgatcattg ccggtgggaa
    11881 agggactgcg gatgagaaat tcgctgctct ggaagccgca ggcgtgaaaa ccgttcgcag
    11941 cctggcggat atcggtgaag cactgaaaac tgttctgaaa taaatatctg taataagaaa
    12001 tagccctcgc cgcttccctc tacaggaatg gcgaagggct gtcggtttcg acatggttgg
    12061 ccatcgtatg atggcctttt ttgtgcttat cgcgatgatt ttcgctgcgc tatcagggta
    12121 aatttatagt catcggtatt aaaagcgttg cggctatatt caaacacccg accatcaact
    12181 aaatatccac gcgatacttt ttcaagaatc ggctttgtct ggctgatatt aagcagacgg
    12241 ctcatctctt cggttggcat cagaggaatg atttcctgtt cgctacgatc gataaccatc
    12301 ttcttcactt cttcaataaa gtgatatttc gaattttcca tgacctgcca ggtgagatcc
    12361 gggaacaacg caagcggcat ccaggtttct tccagcgcca ttggcttttg cttgcgatag
    12421 cgcacgcgct tcacatgcca cacacgatcc tgcgcggtga tttgtagctg ttgctgaaga
    12481 aaatcgtcag ccggaatcac ttcaaatatc aggacttcac tgtgtgtatc gacgtgacgg
    12541 tccgacagtt tttcatcaaa actggttaac tgaaaaatat cgtaattgac ccgctcttct
    12601 ttgacgtaag tcccgctgcc ctgaatgctt tcgaggatct gctgctcgac tagctggcgc
    12661 aaagcctgac gcaccgtaac ccggctgacg ccaaactctg tttgtagcgc tgattcagtg
    12721 ggtaacgcat cgccaggttt aagctcgcca cgcgcaattt gttcacgaat gcgatcggca
    12781 atctgccggt ataagggctt gtgtcccatt tttagtatct cattaatacg aatttagcca
    12841 ttatgcccga taaattcatc ctgtaaataa tgcaaataca atacaaataa tttcaatcaa
    12901 gtgaaattga tcatataatg gtattgtttt atcgggcaca ctggcgcgac tataaaaacg
    12961 atcaagtgag gatcatgatg aatctgacga ctctgaccca ccgcgatgcg ttgcgtctga
    13021 atgcgcgctt taccagccgt gaagaggcca tccacgcgtt gactcaacgt cttgctgctc
    13081 tggggaaaat ttccagtact gagcaatttc tggaagaagt gtatcgccgt gaaagccttg
    13141 gcccgaccgc cttaggtgaa gggttggctg tgccgcatgg caaaactgct gcggtaaaag
    13201 aagcggcgtt tgcggtcgcc acactcagcg agccgcttca gtgggaaggc gttgatggcc
    13261 cggaagcagt tgatttagtg gtgctgctgg cgattccccc caatgaagcg ggtactatgc
    13321 atatgcaact gctgacagcg ctgaccacgc gccttgcgga tgatgagatt cgggcgcgta
    13381 tacagtcggc gacgacgcct gatgagttgc tctcggcgct ggatgacaag ggaggcacgc
    13441 aaccttctgc ctctttttcc aacgcgccaa ctatcgtctg cgtaccggcc tgtccggcgg
    13501 gtattgctca cacctatatg gctgcggaat atctggaaaa agccggacgc aaactcggcg
    13561 taaatgttta cgttgaaaaa caaggcgcta acggcattga agggcgttta acggcggatc
    13621 aactcaatag tgcaaccgcc tgtatttttg cggctgaagt cgccatcaag gagagtgagc
    13681 gttttaatgg cattcccgcg ctttcagtgc ctgttgccga gccgattcgc catgcagaag
    13741 cgttgatcca acaagcgctt accctcaagc gtagcgatga gacgcgtacc gtacagcaag
    13801 atacgcaacc ggtgaaaagt gtcaaaacgg agctgaaaca ggcactgttg agcggaatct
    13861 cttttgccgt accgttgatt gtcgcggggg gcacggtgct ggcggtcgcg gtattactgt
    13921 cgcaaatctt cgggctacaa gatctgttta atgaagaaaa ctcctggctg tggatgtacc
    13981 gcaagctggg cggcgggctg ctcggaattt tgatggtacc ggtgctcgcg gcctataccg
    14041 cctattctct ggcagataaa ccggcgttag cgccaggctt tgcggctgga cttgccgcca
    14101 acatgatcgg ctccgggttt ctcggcgcgg tcgttggcgg attgatagcc ggttacttga
    14161 tgcgctgggt gaaaaatcac ttgcgtctta gcagtaaatt caatggattc ctgacttttt
    14221 atctctaccc ggtgctcggt acgttgggag cgggcagtct gatgctgttt gtggtgggag
    14281 aacctgtcgc atggatcaat aactcgctta ccgcctggct gaacggtctg tcaggaagta
    14341 acgcgctgtt gctgggtgcc attttcggtt ttatgtgttc ctttgatctt ggagggccag
    14401 tgaacaaagc cgcttatgca ttctgcctgg gcgcaatggt gaacggcgtt tacggcccgt
    14461 atgccatttt cgcctccgtc aaaatggttt cggcatttac cgtaaccgct tccacgatgc
    14521 tcgcaccgcg cctgtttaaa gagtttgaaa ttgagaccgg gaaatccacc tggctgttag
    14581 ggctggtagg tattaccgaa ggggcgatcc cgatggcgat tgaagatccg ctgcgggtta
    14641 ttggttcgtt tgtgctgggc tctatggtaa cgggcgctat tgtcggtgcg atgaatatcg
    14701 gcctttcgac acccggtgcc ggcattttct cgctcttttt acttcatgat aatggcgcgg
    14761 gcggtgttat ggcggcaatt ggctggtttg gtgcggcatt ggtgggggct gcaatctcga
    14821 ctgcaattct cctgatctgg cggcgtcacg cggttaagca tggcaactat ctgactgatg
    14881 gcgtaatgcc ataaacaaaa aggaaacgac gatgaaagcg gtatctcgcg ttcacatcac
    14941 cccgcatatg cactgggatc gagagtggta tttcaccacc gaagagtcac gtattctgct
    15001 ggtcaataat atggaagaga tcctgtgccg actggaacag gacaacgaat acaaatatta
    15061 cgtactcgac gggcaaacgg cgatcctcga agattatttc gcggtgaaac cggaaaacaa
    15121 agaccgtgtg aagaaacagg tagaagccgg caagttgatt atcggcccct ggtataccca
    15181 gaccgatacc acgattgttt ctgcggaatc catcgtccgt aatctgatgt acggaatgcg
    15241 tgactgcctc gcgtttggcg agccgatgaa aataggttat ttaccagatt cctttggcat
    15301 gtccgggcaa ctgccgcata tctacaatgg atttggcatt acccgcacca tgttctggcg
    15361 cggatgttcg gagcgccacg gtactgataa aaccgagttt ttgtggcaaa gcagtgacgg
    15421 tagcgaagtg acggcgcagg tgctgccgct gggctacgcc ataggtaagt acttacctac
    15481 cgacgaaaac ggattacgta aacgcctcga cagttatttt gacgtgctgg aaaaagcgtc
    15541 tgtaaccaaa gagattttgc tgccgaatgg tcatgaccag atgccattgc agcaaaatat
    15601 cttcgaagtg atggataagc tacgtgagat ctaccctcaa cgtaagtttg tgatgagccg
    15661 ctttgaagag gtatttgaga agatcgaagc gcagcgtgaa agtctggcca ccctgaaagg
    15721 tgaatttatc gatggcaaat atatgcgcgt acatcgcacc atcggttcca cgcgcatgga
    15781 tatcaaaatt gcccacgcac gtattgaaaa taagattgtt aatctgctgg aaccgctggc
    15841 aacgctggcc tggacgttgg gttttgaata ccaccacggc ttgctggaga aaatgtggaa
    15901 agagatctta aaaaatcatg cccacgacag tatcggttgt tgttgcagtg acaaagttca
    15961 tcgcgaaatt gtcgcccgct tcgaactggc tgaagacatg gcggataatc tgctgcgttt
    16021 ctacatgcgc aaaattgccg ataacatgcc acagagtgat gccgacaaac tcgtgctgtt
    16081 taacctgatg ccctggccgc gggaagaagt tattaacacc actgtgcggc tgcgcgccag
    16141 ccagtttaat ctacgagacg atcgcggtca gcctgtaccg tattttattc gccatgcccg
    16201 tgagatcgat ccaggcctaa tcgatcggca aatagttcat tacggtaatt acgatccctt
    16261 tatggagttt gatatacaga tcaaccagat tgtcccttct atgggctatc gcacgcttta
    16321 tatcgaagcg aatcagcctg gcaacgtgat tgcggcaaaa agtgacgctg aagggatact
    16381 ggaaaatgct ttctggcaaa ttgcgctcaa tgaggatggt tctctgcaac tggtagataa
    16441 agacagcggt gtgcgctatg accgagtatt gc
//
LOCUS       DADMJB010000094        16381 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.094, whole genome shotgun sequence.
ACCESSION   DADMJB010000094 DADMJB010000000
VERSION     DADMJB010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16381
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.094"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..190
                     /locus_tag="JN078_002587"
     CDS             <1..190
                     /locus_tag="JN078_002587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001402762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041748.1"
                     /translation="DMLNPTKDTNWNSTCIYKSRHKMLPVNLTQETLFNSKSQDKHAL
                     FPIFTASWRAYRIMNKGA"
     gene            413..910
                     /gene="ubiC"
                     /locus_tag="JN078_002588"
     CDS             413..910
                     /gene="ubiC"
                     /locus_tag="JN078_002588"
                     /EC_number="4.1.3.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709881.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HAY9041749.1"
                     /translation="MSHPALTQLRALRYFKEIPALDPQLLDWLLLEDSMTKRFEQQGK
                     TVSVTMIREGFVEQNEIPEELPLLPKESRYWLREILLCADGEPWLAGRTVVPVSTLSG
                     PELALQKLGKTPLGRYLFTSSTLTRDFIEIGRDAGLWGRRSRLRLSGKPLLLTELFLP
                     ASPLY"
     gene            923..1795
                     /gene="ubiA"
                     /locus_tag="JN078_002589"
     CDS             923..1795
                     /gene="ubiA"
                     /locus_tag="JN078_002589"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HAY9041750.1"
                     /translation="MEWSLTQNKLLAFHRLMRTDKPIGALLLLWPTLWALWVATPGVP
                     QLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVV
                     LVLISFLLVLTLNTMTILLSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAA
                     VSESVPLSCWLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQYDKLIIGIL
                     QIGVLALMAIIGELNGLGWGYYWSILVAGALFVYQQKLIANREREACFKAFMNNNYVG
                     LVLFLGLAMSYWHF"
     gene            complement(1950..4373)
                     /gene="plsB"
                     /locus_tag="JN078_002590"
     CDS             complement(1950..4373)
                     /gene="plsB"
                     /locus_tag="JN078_002590"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsB"
                     /protein_id="HAY9041751.1"
                     /translation="MSGWPRIYYKLLNLPLSILVKSKSIPADPAPELGLDTSRPIMYV
                     LPYNSKADLLTLRAQCLAHDLPDPLEPLEIDGTLLPRYVFIHGGPRVFTYYTPKEESI
                     KLFHDYLDLHRSNPNLDVQMVPVSVMFGRAPGREKGEVNPPLRMLNGVQKFFAVLWLG
                     RDSFVRFSPSVSLRRMADEHGTDKTIAQKLARVARMHFARQRLAAVGPRLPARQDLFN
                     KLLASRAIAKAVEDEARSKKISHEKAQQNAIALMEEIAANFSYEMIRLTDRILGFTWN
                     RLYQGINVHNAERVRQLAHDGHELVYVPCHRSHMDYLLLSYVLYHQGLVPPHIAAGIN
                     LNFWPAGPIFRRLGAFFIRRTFKGNKLYSTVFREYLGELFSRGYSVEYFVEGGRSRTG
                     RLLDPKTGTLSMTIQAMLRGGTRPITLIPIYIGYEHVMEVGTYAKELRGATKEKESLP
                     QMLRGLSKLRNLGQGYVNFGEPMPLMTYLNQHVPDWRESIDPIEAVRPAWLTPTVNNI
                     AADLMVRINNAGAANAMNLCCTALLASRQRSLTREQLTEQLNCYLDLMRNVPYSTDST
                     VPSASASELIDHALQMNKFEVEKDTIGDIIILPREQAVLMTYYRNNIAHMLVLPSLMA
                     AIVTQHRHISRDVLMEHVNVLYPMLKAELFLRWDRDELPDVIDALANEMQRQGLITLQ
                     DDELHINPSHSRTLQLLAAGARETLQRYAITFWLLSANPSINRGTLEKESRTVAQRLS
                     VLHGINAPEFFDKAVFSSLVLTLRDEGYISDSGDAEPAETMKVYQLLAELITSDVRLT
                     IESATQGEG"
     gene            4544..4912
                     /locus_tag="JN078_002591"
     CDS             4544..4912
                     /locus_tag="JN078_002591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HAY9041752.1"
                     /translation="MANNTTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVV
                     IACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAV
                     LIAIIVAVITWCILLWSHFG"
     gene            5022..5630
                     /gene="lexA"
                     /locus_tag="JN078_002592"
     CDS             5022..5630
                     /gene="lexA"
                     /locus_tag="JN078_002592"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000646075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="repressor LexA"
                     /protein_id="HAY9041753.1"
                     /translation="MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAE
                     EHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLLAQQHIEGHYQVDP
                     SLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKK
                     QGNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVIRNGDWL"
     gene            5649..7028
                     /gene="dinF"
                     /locus_tag="JN078_002593"
     CDS             5649..7028
                     /gene="dinF"
                     /locus_tag="JN078_002593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709876.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter DinF"
                     /protein_id="HAY9041754.1"
                     /translation="MPPGVAVCFSSLFIRLVCMAFLTSSDKALWHLALPMIFSNITVP
                     LLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAYGAKNPQA
                     LARALVQPLLLALGAGALIALLRTPIIDLALHIVGGSEAVLEQARRFLEIRWLSAPAS
                     LANLVLLGWLLGVQYARAPVILLVVGNILNIVLDVWLVMGLHMNVQGAALATVIAEYA
                     TLLIGLLMVRKILKLRGISGEMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVL
                     GARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACR
                     QSGIVALLFSVVYLLAGEHIIALLTSLTQIQQLADRYLIWQVILPLVGVWCYLLDGMF
                     IGATRAAEMRNSMAVAAAGFALTLLTLPWLGNHALWLALTVFLALRGLSLAAIWRRHW
                     RNGTWFAAT"
     gene            7144..7353
                     /locus_tag="JN078_002594"
     CDS             7144..7353
                     /locus_tag="JN078_002594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HAY9041755.1"
                     /translation="MNKDEAGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQ
                     ERYGYQKDQAEKEVVDWETRNEYRW"
     gene            complement(7395..7910)
                     /gene="zur"
                     /locus_tag="JN078_002595"
     CDS             complement(7395..7910)
                     /gene="zur"
                     /locus_tag="JN078_002595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc uptake transcriptional repressor Zur"
                     /protein_id="HAY9041756.1"
                     /translation="MEKTTTQELLAQAEKICAQRNVRLTPQRLEVLRLMSLQDGAISA
                     YDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVESTNSYVLCHLFDQSTHTSAMFI
                     CDRCGAVKEECAEGVEDIMHTLAAKMGFALRHNVIEAHGLCAACVEVEACRHPEQCQH
                     DHSVQVKKKPR"
     gene            8228..8482
                     /locus_tag="JN078_002596"
     CDS             8228..8482
                     /locus_tag="JN078_002596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041757.1"
                     /translation="MLKIIPGATGYFNKTLNSNQFDNEDAIKDKLDNRGSIKGKLNNI
                     YGKSIDYAALRHRDIIIAKIDLFIQRITHNLWHARKKMCF"
     gene            8506..9213
                     /locus_tag="JN078_002597"
     CDS             8506..9213
                     /locus_tag="JN078_002597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2713 family protein"
                     /protein_id="HAY9041758.1"
                     /translation="MWVNKYIDDCTDEDLNDRDFIASVVDRAIFHFAINSICNPGDNK
                     DATPIEQCTFDVETKNGLPSTVQLFYEESKDNEPLANIHFQTIGSGFLTFVNACQEHD
                     DNSLKLFASLLISLSYSSAYADLSETVYINENNESYLKAQFEKLSQRDMKKYLGEMKR
                     LADGGEMNFDGYLDKMSHLVNEGTLDPDILSKMRDAAPQLISFAKSFDPTSKEEIKIL
                     TDTSKLIYDLFGVKSEK"
     gene            9576..10613
                     /gene="dusA"
                     /locus_tag="JN078_002598"
     CDS             9576..10613
                     /gene="dusA"
                     /locus_tag="JN078_002598"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HAY9041759.1"
                     /translation="MHGNSEMQKINQTSAMPEKTDVHWSGRFSVAPMLDWTDRHCRYF
                     LRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEA
                     RGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDD
                     QDSYEFLCDFINTVSGKGECGMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDF
                     PHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDAYPV
                     AVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVL
                     EHALKLVADKR"
     gene            10747..10989
                     /gene="pspG"
                     /locus_tag="JN078_002599"
     CDS             10747..10989
                     /gene="pspG"
                     /locus_tag="JN078_002599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313059.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response protein PspG"
                     /protein_id="HAY9041760.1"
                     /translation="MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALM
                     IKLLPWLLLAIAVVWVIKAIKAPKVPKYQRYDRWRY"
     gene            complement(11154..12137)
                     /locus_tag="JN078_002600"
     CDS             complement(11154..12137)
                     /locus_tag="JN078_002600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone oxidoreductase"
                     /protein_id="HAY9041761.1"
                     /translation="MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFID
                     TYIRSGLYPPPSLPSGSGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIN
                     ADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQW
                     AKALGAKLIGTVGTAQKAQSALKAGAWQVINYREENLVERLKEITGGKKVRVVYDSVG
                     RDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREEL
                     TEASNELFSLIASGVIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLIP"
     gene            12220..13635
                     /locus_tag="JN078_002601"
     CDS             12220..13635
                     /locus_tag="JN078_002601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase DnaB"
                     /protein_id="HAY9041762.1"
                     /translation="MAGNKPFNKQQAEPRERDPQVAGLKVPPHSIEAEQSVLGGLMLD
                     NERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGG
                     FAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIAEAGFDPQGRTSEDLLDL
                     AESRVFKIAESRANKDEGPKNIADVLDATVARIEQLFQQPHDGVTGVNTGYDDLNKKT
                     AGLQPSDLIIVAARPSMGKTTFAMNLVENAAMLQDKPVLIFSLEMPSEQIMMRSLASL
                     SRVDQTKIRTGQLDDEDWARISGTMGILLEKRNIYIDDSSGLTPTEVRSRARRIAREH
                     GGIGLIMIDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQR
                     ADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVR
                     LTFNGQWSRFDNYAGPQYDDE"
     gene            13688..14767
                     /gene="alr"
                     /locus_tag="JN078_002602"
     CDS             13688..14767
                     /gene="alr"
                     /locus_tag="JN078_002602"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HAY9041763.1"
                     /translation="MQAATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLE
                     TARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNE
                     EQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAGAFYHRLTQCKNVRQPVNIVSHF
                     ARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPGIILYGVS
                     PLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGD
                     GYPRAAPSGTPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERI
                     AEMTKVSAYELITRLTSRVAMKYVD"
     gene            15020..16213
                     /gene="tyrB"
                     /locus_tag="JN078_002603"
     CDS             15020..16213
                     /gene="tyrB"
                     /locus_tag="JN078_002603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709866.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transaminase"
                     /protein_id="HAY9041764.1"
                     /translation="MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIP
                     QLKAVAEAEARLNAQPHGASLYLPMEGLNSYRHAIAPLLFGADHPVLQQQRVATIQTL
                     GGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNSVRF
                     NDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGF
                     SAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVLCEDAEAAGRVLGQL
                     KATVRRNYSSPPNLGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEM
                     PERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKA
                     FAAVM"
BASE COUNT         3915 a         3904 c         4335 g         4227 t
ORIGIN      
        1 tgatatgttg aatcctacaa aagataccaa ttggaattct acgtgtatct ataaatccag
       61 acataagatg ttgcctgtta atcttactca ggaaacactt ttcaactcca aatctcagga
      121 taaacatgcg cttttcccca tttttactgc gagttggcga gcttatcgta taatgaataa
      181 gggtgcttaa gtaaaggaaa acatcaccgt tcctggcatc ctgggcggtg atgcccctat
      241 ggttgccctc gccagcgcgg gcatcggcaa agcgtaaggt tcaaaagcga tttaccactt
      301 catgcgattg ttgcgttttt gttgcgcatt agatcactta atttgcttta catctcccgt
      361 aaacactttt ctgcgataca atgcctttac gttatgtaac ggagagttcg gcatgtcaca
      421 ccccgcgtta acgcaactgc gtgcgctgcg ctattttaaa gagatccctg ccctggatcc
      481 gcaactgctc gactggctgt tgctggagga ttccatgaca aaacgttttg aacagcaggg
      541 aaaaacggta agcgtgacga tgatccgcga agggtttgtc gagcagaatg aaatccccga
      601 agaactgccg ctgctgccga aagagtctcg ttactggtta cgtgaaattt tgttatgtgc
      661 cgatggtgaa ccgtggcttg ccggtcgtac cgtcgttcct gtgtcaacgt taagcgggcc
      721 ggagctggcg ttacaaaaat tgggtaaaac gccgttagga cgctatctgt tcacatcatc
      781 gacattaacc cgggacttta ttgagatagg ccgtgatgcc gggctgtggg ggcgacgttc
      841 ccgcctgcga ttaagcggta aaccgctgtt gttaacagaa ctgtttttac cggcgtcacc
      901 gttgtactaa gaggaaaaaa atatggagtg gagtctgacg cagaataagc tgctggcgtt
      961 tcatcgctta atgcgtacgg ataagccaat tggcgcgtta ctgctgctct ggccaacatt
     1021 atgggcgttg tgggtggcga caccgggcgt tcctcagctc tggatcctgg cggtatttgt
     1081 cgcgggtgtc tggctgatgc gcgctgccgg atgtgtggtg aatgattatg ctgaccgaaa
     1141 gtttgatggt catgttaagc gcacggcgaa ccgaccactt cccagcggcg cggtaacaga
     1201 gaaagaggcg cgcgcgctgt ttgtagtgct ggtactgatt tcgtttttac tggtactgac
     1261 gctgaatacg atgaccattc tgttgtcgat tgccgctctg gcgttggcgt gggtgtaccc
     1321 gtttatgaag cggtataccc atctcccgca agtggtgctg ggcgcggcgt ttggctggtc
     1381 gattccaatg gcttttgccg ctgtgagtga gtcggtgcca ttgagttgct ggttaatgtt
     1441 cctcgccaat attctctggg cggtggctta cgacacgcag tatgcgatgg ttgaccgcga
     1501 tgatgatgtg aagattggca ttaaatccac ggcaatcctg ttcggccaat acgataaatt
     1561 gattattggt attttgcaga ttggcgtact ggcactgatg gcgatcatcg gtgagttaaa
     1621 tggcttaggc tggggatatt actggtcaat tctggtggct ggcgcgctgt ttgtttatca
     1681 acaaaaactg attgccaacc gcgagcgtga agcctgcttt aaagcattta tgaataataa
     1741 ctatgttggt ctggtactat ttttagggct ggcaatgagt tactggcatt tctgatgatg
     1801 taaaaaagcc ggatgatcat ccggctttct tctgggttgc ctgatgcgcg gcgcttctca
     1861 ggcctacaca acacatcgca atttattgaa tttgcagatt atggaatgcc ggataaggcg
     1921 ttttcgccgc atccggcaat tctctctggt tacccttcgc cctgcgtcgc actctcaatc
     1981 gtcaaacgca cgtctgatgt aatcaactcc gccagcaact gataaacctt catcgtttct
     2041 gccggttcgg catcgccgct atcgctgata tacccttcat cacgcagcgt cagcaccaga
     2101 gaactgaaca ccgccttgtc gaagaactcc ggcgcgttga taccgtgcag cacggagaga
     2161 cgttgcgcga cggtgcggct ctctttctcc agcgtaccgc ggttgatcga cgggttagcg
     2221 ctcaacagcc agaaggtgat ggcataacgt tgcagcgttt cgcgcgcgcc tgcggccagc
     2281 agctgtagcg tgcgagaatg cgacgggttg atatgcaact catcatcttg cagggtaatc
     2341 agcccctgac gttgcatctc atttgccaac gcatcaataa cgtccggcaa ctcgtcgcga
     2401 tcccagcgca ggaacagctc cgctttcagc attgggtaaa gcacattgac gtgctccatc
     2461 aatacgtcgc gggagatgtg gcgatgctgg gtgacaattg ccgccatcag cgaaggcagc
     2521 accaacatat gcgcaatgtt gttgcgatag taggtcatca gcaccgcttg ctcgcgcggc
     2581 agaatgatga tgtcgccgat agtgtctttc tcaacttcaa acttgttcat ttgcagcgcg
     2641 tgatcgataa gctcgctggc gctggctgaa ggaacggtag agtccgtgga gtaaggtacg
     2701 ttgcgcatca gatccaggta gcagttgagt tgctcggtta actgctcgcg ggtaagtgag
     2761 cgctgacgtg atgccagtag cgcggtacag cagaggttca tggcgtttgc cgcgcctgcg
     2821 ttgttaatgc gtaccatcag atcggcagca atattattga ccgtcggcgt taaccatgcc
     2881 ggacgcaccg cttcgatggg atcgatagat tcacgccagt caggtacatg ctggttaagg
     2941 taggtcatca acggcattgg ttcaccgaag ttgacgtaac cctgaccgag attacgcagc
     3001 ttgcttaaac cgcgcagcat ctgcggcagg ctctctttct ctttcgtcgc accgcgcagt
     3061 tctttggcgt aagtacccac ttccatgacg tgctcataac cgatatagat cggaatcagc
     3121 gtaatcggac gcgtgccgcc acgcagcatc gcctgaatgg tcatcgacag cgtaccggtt
     3181 ttcggatcca gcaaacgccc cgtacgggaa cgaccgcctt ccacgaaata ctcgacggaa
     3241 taaccacggc tgaacagttc gccgagatac tcacggaaaa cggtggaata aagtttattg
     3301 cctttaaacg tacggcgaat aaagaacgcc cccagacggc ggaaaatcgg cccggccggc
     3361 cagaaattca ggttgatccc ggcggcgata tgcggcggca ccagcccctg gtggtacagc
     3421 acgtaagaaa gtagcaggta gtccatgtga ctgcggtggc aaggcacata caccagctca
     3481 tgaccgtcgt gggccagctg gcgaacgcgc tcggcgttat ggacgttgat gccctgataa
     3541 agtcggttcc aggtgaagcc cagaatgcgg tcagtcaggc ggatcatctc gtaagagaaa
     3601 ttcgccgcaa tctcttccat cagcgcaatc gcgttctgct gcgctttttc atgggagatt
     3661 tttttgctgc gcgcttcatc ttctaccgct ttggcaatgg cgcgggaggc gagcagctta
     3721 ttaaacagat cctgacgagc aggcagacgt gggcccacag cagccagacg ttgacgggca
     3781 aagtgcatac gcgccacgcg cgccagtttc tgtgcgatag ttttatccgt gccgtgttca
     3841 tccgccatac ggcgcagcga aactgacggc gagaaacgca caaaactgtc gcgaccgagc
     3901 cacagtacag cgaaaaattt ctgtacgccg ttaagcatac gcagcggcgg gtttacttcg
     3961 cctttttcac gccccggcgc gcgaccaaac atcaccgata ctggcaccat ctgcacatcc
     4021 agatttgggt tgctacggtg caaatcgaga tagtcgtgga acagcttaat agactcttct
     4081 ttcggcgtgt aataggtgaa tacacgcggc ccgccgtgaa tgaacacata gcgcggcagt
     4141 agcgtgccgt cgatttccag cggctctaac gggtcaggca agtcatgagc cagacactgg
     4201 gcgcgtaacg tcagcaaatc tgctttcgag ttgtacggta aaacgtacat aattggacga
     4261 gaggtatcca gccccagttc cggggcagga tctgccggaa tagacttgct ttttaccagg
     4321 atgcttaatg gtaaattcag taatttgtag taaattcgtg gccagccgga cataaacgat
     4381 gtaaagcctc tggttaataa tgcaaatgcg cggcaaggat agcagaaagt catgggaaat
     4441 tctgtggtat ccgctcatgt ttcgcgcggc gttacgcaaa cccgaatcat cggatttaac
     4501 ggtacactga tattgacgct cataatgtaa aaaggttctt tcaatggcca ataataccac
     4561 tggattcacc cgaattatca aagctgctgg ctattcctgg aaaggtttac gcgctgcatg
     4621 gatcaacgaa gcggcattcc gtcaggaagg cgtagcggta ttgttggcgg tggtcatcgc
     4681 ctgctggctg gatgtggacg caattacccg cgtgctgctt atcagctccg tgatgctggt
     4741 gatgattgtg gaaatcctca atagcgccat cgaagcagtg gttgaccgaa ttggctctga
     4801 ataccatgag ctttccggac gcgcaaaaga tatgggatcc gccgcggtgc tgattgcgat
     4861 tatcgtcgcc gtgataacct ggtgcatcct gttatggtcg cattttggat aacccttcca
     4921 gaattcgata aatctctggt ttattgtgca gtttatggtt ccaaaatcgc cttttgctgt
     4981 atatactcac agtataactg tatatacacc cagggggcgg aatgaaagcg ttaacggcca
     5041 ggcaacaaga ggtgtttgat ctcatccgtg atcacatcag ccagacaggt atgccgccga
     5101 cgcgtgcgga aatcgcgcag cgtttggggt tccgttcccc aaacgcggct gaagaacatc
     5161 tgaaggcgct ggcacgcaaa ggagttattg aaattgtttc cggcgcatca cgcgggattc
     5221 gtctgttgca ggaagaggaa gaagggttgc cgctggtagg tcgtgtggct gccggtgaac
     5281 cgcttctggc gcagcagcat attgaaggtc attatcaggt cgatccttcc ttattcaagc
     5341 cgaatgctga tttcctgctg cgcgtcagcg ggatgtcgat gaaagatatt ggcattatgg
     5401 atggcgactt gctggcagtg cataaaactc aggatgtacg taacggtcag gtcgttgtcg
     5461 cacgtattga tgacgaagtt accgttaagc gcctgaaaaa acagggcaat aaagtcgaac
     5521 tgttgccaga aaatagcgag tttaaaccaa ttgtcgttga ccttcgtcag cagagcttca
     5581 ccattgaagg gctggcggtt ggagttattc gcaacggcga ctggctgtaa catatctctg
     5641 agaccgcgat gccgccaggc gtcgcggttt gtttttcatc tctcttcatc aggcttgtct
     5701 gcatggcatt cctcacttca tctgataaag cactctggca tctcgcctta cccatgattt
     5761 tctccaatat caccgttccg ttgctgggac tggtcgatac ggcggtaatt ggtcatcttg
     5821 atagtccagt ttatttgggc ggcgtggcgg ttggtgcaac ggcgaccagc tttctcttta
     5881 tgctgttgct gtttttacgc atgagcacca ccgggctgac tgcgcaggct tatggtgcca
     5941 aaaatcctca ggcattagcc cgtgcgctgg tgcaaccgtt gctgttggcg ttgggggcag
     6001 gggcgttaat tgcgctgctg cgtacaccga ttatcgatct ggcactgcat attgttggcg
     6061 gtagtgaagc agtcctggaa caggcgcggc gctttcttga aatccgctgg ttaagcgcac
     6121 cggcgtcact ggcgaatctg gtattacttg gttggttact cggcgtgcaa tatgcccgtg
     6181 cgccagtaat tttgttagtg gtcggcaata tcctcaacat tgtgctggat gtctggctgg
     6241 tgatggggct gcatatgaac gtgcagggcg cggcgctggc gacggttatt gcggaatatg
     6301 caacattgct gattggtctg ctaatggtgc gtaaaatcct caaactacgc ggaatttccg
     6361 gcgaaatgct gaaaactgcc tggcgaggaa acttccgtcg cttgctggcg cttaaccgcg
     6421 atatcatgct gcgttcgctg ttgttgcaac tctgtttcgg cgcgatcacc gtacttggtg
     6481 cgcgactggg gagtgacatt atcgctgtta acgcggttct gatgacgcta ctcaccttta
     6541 ccgcctatgc gctggatggt tttgcctacg cggttgaagc gcattccggt caggcgtacg
     6601 gtgcgcgcga cggtagccag ttgctggatg tctggcgggc agcgtgccgc cagtcgggga
     6661 tcgtagcgtt actgttttcg gtagtttatt tgctggcagg ggaacacatc attgcgttgc
     6721 tgacgtcgtt aacccagatt cagcagctgg ccgaccgcta tcttatctgg caggtgattt
     6781 tgccgttggt tggcgtctgg tgttatctgc tggacggcat gtttataggc gcaacgcgcg
     6841 cagccgaaat gcgtaacagt atggcggtgg ccgccgcagg ttttgcgctg acgctcctta
     6901 cgctgccgtg gctgggtaat catgctttgt ggctggcgtt aaccgtcttt ctggcgttgc
     6961 gcgggctttc tctggcggct atctggcggc gtcactggcg caacggtacc tggtttgccg
     7021 caacgtgacg gttaaaaatt ctgaataaat aatcctaagc caaattgctg actacactta
     7081 atctcacgtt cagaagaaaa gtgaacgtac tctcattcac aacctaacga tgaggtcttg
     7141 attatgaata aagatgaagc cggcggtaac tggaaacagt ttaaaggtaa agtgaaagag
     7201 caatggggca aactgaccga tgatgatatg acgatcattg aaggtaaacg tgatcaactg
     7261 gtcggtaaaa tccaggaacg ttatggttat cagaaagatc aggcagaaaa agaggtcgtg
     7321 gattgggaaa cccgcaatga atatcgctgg taattaatcc ctcctgcccg acgtgtacaa
     7381 ggatgtacgc cctcttaacg cggtttcttt ttcacctgca cagagtgatc atgctggcac
     7441 tgttcaggat gacgacacgc ttccacttcc acgcatgccg cacagagccc atgtgcttca
     7501 atcacattat gccgcagggc aaaccccatt tttgccgcca gcgtatgcat gatgtcttcc
     7561 acgccttctg cacactcttc tttcactgcg ccgcagcgat cgcaaataaa catggctgaa
     7621 gtatgggtgg actggtcgaa cagatgacag agcacataac tgttggtgga ttccacctta
     7681 tgcacaaaac cttgctcaag cagaaaatcc agcgcgcgat aaaccgttgg cggcttggct
     7741 tgcggttcag cttcgcgcag taaatcaagc agatcataag cgctgatagc gccatcctgc
     7801 agactcatca ggcgcaacac ttccaggcgc tgtggggtca ggcgcacatt acgctgcgcg
     7861 cagatttttt cagcctgcgc taataactcc tgcgttgtgg tcttttccat cgggcacctc
     7921 aaagtggggg ttaagaatgt ccttacttta ccatgttcca ggaaaaacac cgagaaccct
     7981 tattgttgcc gtaatgttga ttttctgttt tgtaggtaag gtgttatgtt gccttgtcgt
     8041 accattatca acacgataat aattaataat tcatttttaa ataaattgct tcaagttaac
     8101 tcgctattta tttaactggg tttaaacgca tacctgtagt tcagaaatta tgagcgattt
     8161 ttgatagtga ccagatggca aaagaattat aaggaggaca cggtacgaca aaaaaggtag
     8221 atgaatcatg ttgaagataa tacccggtgc aactggatac tttaataaaa cactcaattc
     8281 aaatcaattc gataatgaag atgcaatcaa agataaatta gataatagag gttcaatcaa
     8341 aggtaaatta aataatatat atggtaaatc tattgattat gcagcgctgc gtcatcggga
     8401 tataattatt gcaaaaatag atttgtttat tcaacgaatc acgcataatt tatggcatgc
     8461 acgtaaaaaa atgtgttttt aattgagcaa ataaatgatc tcaaaatgtg ggtcaataag
     8521 tatattgacg attgcactga tgaggattta aacgatcgtg actttattgc atcagttgtt
     8581 gaccgggcta tttttcattt cgcgattaat agtatatgta atcctgggga taataaagat
     8641 gcgactccca ttgaacaatg tacttttgat gtagaaacta agaatggcct tccctccacg
     8701 gttcagctat tttatgagga atctaaggat aatgaacctt tagcgaatat acattttcaa
     8761 acaataggtt ctggtttttt aacgtttgtt aatgcctgcc aggaacatga tgacaacagc
     8821 ttaaaattat ttgcttcgct gttaatttca ctttcatatt ctagtgccta cgcagattta
     8881 tcagaaacag tgtatattaa tgaaaataat gagagctacc tgaaagctca gtttgaaaaa
     8941 ttatctcaac gtgatatgaa gaagtacctg ggagagatga agcgtctggc tgatggggga
     9001 gaaatgaatt ttgatggcta tctggataag atgtcacatc tggtgaatga agggacgctc
     9061 gatcctgata ttttaagcaa aatgcgagat gctgcaccac aattaattag cttcgcgaag
     9121 tcgtttgacc caacctcaaa ggaagagatt aaaatactta cagacacttc taaattaatt
     9181 tatgatttgt tcggggttaa atcggagaaa taatatgtga agttcttcga tagtatggaa
     9241 ggcattatat aaaaggaccc aatatttatt gggtcctttt ttctctatca atgctattag
     9301 cagggagata tatcaccaaa gtttaatgtg tgatttttta tttatcgtcg aacctggatt
     9361 gtttatcatt ggccttaaca aagttaacgg ctaataagat tatttccatc acttcgtgag
     9421 agcttcatgc cttgagagga tctcaatttt cttttgcaat gagacaggcg cttcctgttg
     9481 ttatggtata gtaccccgct attgagcctc ctgaatagtg atgctgaata acataacccc
     9541 atgatatatc gataaaataa tctctacatt tgaaaatgca cggtaattct gaaatgcaaa
     9601 aaatcaacca aaccagcgca atgcctgaaa aaactgacgt tcactggagt ggtcggttta
     9661 gcgttgcacc aatgctcgac tggacggaca gacattgccg ctatttcttg cgtctgcttt
     9721 cccgcaatac gttgctgtat accgaaatgg tgaccacagg ggcgattatt cacggtaaag
     9781 gtgattacct ggcgtacagt gaagaagaac atccggtagc gttgcaactc ggcggtagcg
     9841 atccggcggc gctggcacag tgtgcgaagc tggcagaagc gcgtggatat gatgagatca
     9901 acctgaatgt cggctgcccg tctgaccggg tgcagaacgg catgtttggt gcgtgtctga
     9961 tgggtaatgc gcagctggtt gccgattgcg tgaaagcgat gcgcgatgtg gtgtcgattc
    10021 cggtgacggt gaaaacgcgt attggcatcg atgaccagga cagctatgaa tttctctgcg
    10081 atttcatcaa caccgtttcc ggcaaaggcg agtgtgggat gttcatcatc catgcacgta
    10141 aagcctggct ttcggggtta agcccgaaag aaaaccgtga aatcccgccg ctcgattatc
    10201 cgcgtgtgta tcaactgaag cgtgactttc cgcatctgac aatgtcgatt aacggtggta
    10261 tcaagtcgct ggaagaggcc aaagcacacc tgcaacatat ggatggcgtg atggtcgggc
    10321 gcgaggcgta tcagaatccg ggtattctgg cggcggtaga ccgggagatc tttggttcct
    10381 cggataccga tgcctatccg gtggcggtag tgcgcgccat gtatccgtac attgagcgtg
    10441 aactcagcca ggggacgtat ctcggccata ttacccggca tatgttgggc ttgttccagg
    10501 gtattcctgg cgcgcggcag tggcggcgtt atttaagtga aaatgcccat aaagcgggtg
    10561 cagacattaa tgtgctggaa cacgcgctca aactggtggc ggataagcgt taacttttca
    10621 ccaaaaagta gtcaaattca ccacgccctg cgcaccgtcg cggggcgttt tgctgttaaa
    10681 tcaatagatt atttttggca tgattcttgt aatgccagca agagatttca tatttgggag
    10741 agcatcatgc tggaactact ttttgtgatt ggcttttttg tcatgctgat ggtcaccggc
    10801 gtttcgttgc tgggcattat cgccgcgctg gttgtggcga cggccattat gttcctcggc
    10861 ggtatgctgg cattgatgat taagttgctg ccgtggttac tactggcgat tgcggtggtg
    10921 tgggttatta aggcgattaa agcaccaaaa gtgcctaaat atcagcgtta tgaccgctgg
    10981 cgttactaag ggattgtgcg gatgatcaca acctaaggtt ttatccttag aacaaaatag
    11041 gaattgataa tcaaatctgt cactattgcg cctctaacag attcatcgtg ctgtacccta
    11101 catacagccg actataaaaa gaaagggctt cccaggtgga agccctattt cttttatgga
    11161 atcagcaggc tggaaccttg cgtcgcccgg ctttccagaa tctcatgcgc acgctgcgca
    11221 tccttcagcg gatatttctg ctgctcggcg acatcgacct taatcacacc gctggcaatc
    11281 aaagagaaca gttcattact ggcctcggtt aattcctccc gtgtggtgat atagccttgc
    11341 agggaagggc gtgtcacata caacgagcct ttttgattga gaatgcctaa gttcacaccg
    11401 gtaaccgcac ctgatgagtt gccaaaactg accattaagc cgcggcgttg caggcaatcc
    11461 agcgaccgtt cccaggtgtc tctgcccacg gaatcgtaca ctacgcgcac tttcttaccg
    11521 ccggtgatct ctttcaatcg ctcgaccaga ttctcttcac gatagttaat aacctgccac
    11581 gcgccggctt ttagcgcgct ctgcgctttt tgcgcggttc ctacggtgcc gataagtttc
    11641 gcgcccagag cttttgccca ctggcaggca atcaagccaa cgccgccagc cgctgcgtgg
    11701 aacaggaact gttcatcggg tttaatttca taggttttgc gcagcagata ataaaccgtt
    11761 aagcctttca ggaaagatgc tgcagcttgc tcaaaagaaa tagccgcagg cagaatcgcc
    11821 gctttatccg cattaatgtt atgcacagag ctgtaagcgc ctaacgccga ctgcgcatag
    11881 actacacgat cgcctgcctt aatatgcttt acaccactgc cgactttact cacgatgcct
    11941 gccgcttcgg tacctgatcc gctgggtagt gatggcggcg ggtaaaggcc gctgcggata
    12001 tacgtgtcga taaaattgat gccgatggct ttattttcga cctggatttc attctctgcc
    12061 ggatcggcag gagtgaactc tacggcttga agtacttccg ggccaccgtg cttgtgaaat
    12121 tcaattcgtg ttgccatgtg tcctccagaa cgtatcgtca gggtctgctt catatggtaa
    12181 agtttcgacc cattctttat ctcggtaact ccattcacta tggcaggaaa taaacccttc
    12241 aacaaacagc aggctgaacc ccgcgaacgc gatccacaag ttgccgggct gaaagtgcct
    12301 ccgcactcga tcgaagcgga gcagtcggtg ttgggcggtt taatgctgga taacgaacgc
    12361 tgggacgatg tagccgagcg tgtggtggca gacgattttt acacccgccc acaccgccat
    12421 atctttactg aaatggcgcg tttgcaggaa agcggtagtc ctatcgatct gattaccctt
    12481 gcggaatcgc tggaacgcca ggggcaactc gatagcgtcg gtggttttgc ttatctggca
    12541 gagctgtcaa aaaatacgcc aagtgcggcg aacatcagtg cttatgctga catcgtgcgt
    12601 gaacgtgccg ttgtccgtga gatgatctcg gttgcgaatg agattgctga agccggtttt
    12661 gatccgcagg ggcgtaccag cgaagatctg ctggaccttg ctgaatcccg cgtctttaaa
    12721 attgccgaaa gtcgtgcaaa caaagacgaa gggccgaaga acatcgccga tgtgctcgac
    12781 gcaaccgtgg cgcgtattga gcagttgttt cagcagccac acgatggcgt taccggagta
    12841 aacaccggtt atgacgatct caacaaaaaa accgctggct tgcagccgtc ggatttgatc
    12901 atcgtcgccg cgcgtccgtc gatgggtaaa acaacatttg cgatgaacct cgtcgaaaac
    12961 gcggcgatgt tgcaggataa accagtactt atcttctcgc tggagatgcc ttcagaacag
    13021 attatgatgc gttctctggc gtcgctgtcg cgcgttgacc agactaaaat ccgtaccggg
    13081 cagctcgatg atgaagactg ggcgcgcatt tccggcacca tgggtatttt gctcgaaaaa
    13141 cgcaatatct atatcgatga ctcctccggc ctgacgccaa cggaagtgcg ttcccgcgca
    13201 cgccgtattg cccgtgaaca cggcggcatc gggcttatca tgatcgacta cctgcaactg
    13261 atgcgcgtac cggcgctttc cgataaccgt acgctggaaa ttgcagaaat ctctcgctcg
    13321 ctgaaagcac tggcgaaaga actgaacgtg ccggtggtgg cgctgtccca gttgaaccgt
    13381 tctctggaac aacgtgccga caaacgcccg gtcaactccg acctgcgtga atctggctct
    13441 atcgagcagg atgcggactt gatcatgttt atctatcgtg atgaggtgta tcacgaaaac
    13501 agtgatttaa aaggcatcgc ggaaattatt atcggtaaac aacgtaacgg cccaatcggg
    13561 acggtacgcc tgacctttaa cggtcaatgg tcgcgcttcg acaactatgc ggggccgcag
    13621 tacgacgacg aataataatt attttatgaa ttaggcaatt aaagcaaaca cttatcaagg
    13681 aacacaaatg caagcggcaa ctgttgtgat taaccgccgc gctctgcgac acaacctgca
    13741 acgtcttcgt gaactggccc ctgccagtaa aatggttgcg gtggtgaaag cgaacgctta
    13801 tggtcacggt cttcttgaga ccgcgcgaac gctccccgat gctgacgcct ttggcgtagc
    13861 ccgtctcgaa gaagctctgc gactgcgtgc ggggggaatc accaaacctg tactgttact
    13921 cgaaggcttt tttgatgcca gagatctgcc gacgatttct gcgcaacatt ttcataccgc
    13981 cgtgcataac gaagaacagc tggctgcgct ggaagaggct agcctggacg agccggttac
    14041 cgtctggatg aaactcgata ccggtatgca ccgtctgggc gtaaggccgg aacaggctgg
    14101 ggcgttttat catcgcctga cacagtgcaa aaacgttcgt cagccggtga atatcgtcag
    14161 ccattttgcg cgcgcggatg aaccaaaatg tggcgcaacc gagaaacaac tcgctatctt
    14221 taataccttt tgcgaaggca aacctggtca acgttccatt gccgcgtcgg gtggcattct
    14281 gctgtggcca caatcgcatt ttgactgggt gcgcccgggc atcattcttt atggcgtctc
    14341 gccgctggaa gatcgctcca ccggtgccga ttttggctgt cagccagtga tgtcactaac
    14401 ctccagcctg attgccgtgc gtgagcataa agccggagag cctgttggtt atggtggaac
    14461 ctgggtaagc gaacgtgata cccgtcttgg cgtagtcgcg atgggctatg gcgatggtta
    14521 tccgcgcgcc gctccatccg gtacgccagt gctggtgaac ggtcgcgaag taccgattgt
    14581 cgggcgcgtg gcgatggata tgatctgcgt agacttaggt ccacaggcgc aggacaaagc
    14641 cggggatccg gtcattttat ggggcgaagg tttgcccgta gaacgtatcg ctgaaatgac
    14701 aaaagtgagc gcttacgaac ttattacgcg cctgacttca agggtcgcga tgaaatacgt
    14761 ggattaatcg ttctgtaata tttgattgtc tgtgccggat gcggcgtgaa tgccttatcc
    14821 ggccaataaa atcctaaaaa ttcaataagt tgatgttctt tcatgctctt ataaaggtcg
    14881 tgcctctggc ggatgttcgt ttgtcatgag tctcactctg ttgctaattg ccgttcgctc
    14941 ctgaacatcc actcgatctt cgccttcttc cggtttattg tgttttaacc acctgcccgt
    15001 aaacctggag aaccatcgcg tgtttcaaaa agttgacgcc tacgctggcg acccgattct
    15061 tacgcttatg gagcgtttta aagaagaccc tcgcagcgac aaagtgaatt taagtatcgg
    15121 tctgtactac aacgaagacg gaattattcc acaactgaaa gccgtggcgg aggcggaagc
    15181 gcgcctgaat gcgcagcccc atggcgcttc gctttattta ccgatggaag ggcttaacag
    15241 ctatcgccat gccattgcgc cgctgctgtt tggtgcggac catccggtac tgcaacaaca
    15301 gcgcgtagca accattcaaa cccttggcgg ctcaggggca ttgaaagtgg gcgcggattt
    15361 cctgaaacgc tacttcccgg aatcaggcgt ctgggtcagc gatcctacct gggaaaacca
    15421 cgtagcaata ttcgccgggg ctggattcga agtgagtact tacccctggt atgacgaagc
    15481 gactaacagc gtgcgcttta atgacctgtt ggcgacgctg aaaacattac ctgcccgcag
    15541 tattgtgttg ctgcatccat gttgccacaa cccaacaggt gccgatctca ctaatgatca
    15601 gtgggatgcg gtgattgaaa ttctcaaagc ccgcgagctt atcccattcc tcgatattgc
    15661 ctatcaagga tttagtgccg gtatggaaga ggatgcctac gctattcgcg ccattgccag
    15721 cgctggatta cccgctctgg tgagcaattc gttctcgaaa attttctccc tttacggcga
    15781 gcgcgtcggc ggactttctg ttctgtgtga agatgccgaa gccgctggcc gcgtactggg
    15841 gcaattgaaa gcaacagttc gccgcaacta ctccagcccg ccgaatttgg gtgcgcaggt
    15901 ggtggctgca gtgctgaatg acgaggcatt gaaagccagc tggctggcgg aagtagaaga
    15961 gatgcgtact cgcattctgg caatgcgtca ggaattggtg aaggtattaa gcacagagat
    16021 gccagaacgc aatttcgatt atctgcttaa tcagcgcggc atgttcagtt ataccggttt
    16081 aagtgccgct caggttgacc gactacgtga agaatttggt gtctatctca tcgccagcgg
    16141 tcgcatgtgt gtcgccgggt taaatacggc aaatgtacaa cgtgtggcaa aggcgtttgc
    16201 tgcggtgatg taatgcagga aagcaggctg gagttaccca gcctgcagtg aaattaaact
    16261 gtcgtcgctt tcactatttc tttgtagatg atttttttga tgccgttgtt ctacgtgaga
    16321 gataataaaa cgttgtcagt tcttttattg ttaagtttat cccaattaac tggaattcct
    16381 t
//
LOCUS       DADMJB010000095        15959 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.095, whole genome shotgun sequence.
ACCESSION   DADMJB010000095 DADMJB010000000
VERSION     DADMJB010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15959)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15959)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15959
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.095"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            6..1241
                     /locus_tag="JN078_002604"
     CDS             6..1241
                     /locus_tag="JN078_002604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HAY9041765.1"
                     /translation="MSKLPTGVEIRGKYIRIWFMFRGKRCRETLKGWEITNSNIKKAG
                     NLRALIVHEISSGEFEYLRRFPQSSTGAKMVTTRVIKTFGELCDIWTKIKETELTTNT
                     MKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLHGETLYLDNPRSNKKGRTVRT
                     VDSYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPDPLSKTEFNALMESEKGQS
                     QNLWKFAVYSGLRHGELAALAWEDVDFEKGIVNVRRNLTILDMFGPPKTNAGIRTVTL
                     LQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVFMPRVCNEKQKPYYSVS
                     SLGARWNAAVKRAGIRRRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYEIYG
                     MWIDDMNDEQIAMLNARLS"
     gene            1293..2228
                     /gene="ttcA"
                     /locus_tag="JN078_002605"
     CDS             1293..2228
                     /gene="ttcA"
                     /locus_tag="JN078_002605"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HAY9041766.1"
                     /translation="MQENQQITKKEQYSLNKLQKRLRRNVGEAIADFNMIEEGDRIMV
                     CLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGFPEHVLPVYLEKLGVEYKI
                     VEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFL
                     NMFYGGKMKGMPPKLMSDDGKHIVIRPLAYCREKDIQRFADAKAFPIIPCNLCGSQPN
                     LQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGITHGSEVVNGGD
                     LAFDREEIPLQPAGWQPEEDENQLDELRLNVVEVK"
     gene            complement(2357..3730)
                     /gene="dbpA"
                     /locus_tag="JN078_002606"
     CDS             complement(2357..3730)
                     /gene="dbpA"
                     /locus_tag="JN078_002606"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase DbpA"
                     /protein_id="HAY9041767.1"
                     /translation="MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVR
                     VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTK
                     ILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLD
                     MGFSDAIDDVIRFAPASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDSTDALPPIEQ
                     QFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLE
                     QRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTAR
                     AGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLEAEMATLCIDGGKK
                     AKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKT
                     CRVRLLK"
     gene            complement(4176..5159)
                     /gene="zntB"
                     /locus_tag="JN078_002607"
     CDS             complement(4176..5159)
                     /gene="zntB"
                     /locus_tag="JN078_002607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZntB"
                     /protein_id="HAY9041768.1"
                     /translation="MEAIKGSDVNVPDAVFAWMLDGRGGVKPLENTDVIDEAHPCWLH
                     LNYVHHDSAQWLATTPLLPNNVRDALAGESTRPRVSRLGEGTLITLRCINGSTDERPD
                     QLVAMRVYMDGRLIVSTRQRKVLALDDVVSDLEEGTGPTDCGGWLVDVCDALTDHSSE
                     FIEQLHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPW
                     MSDDQRRRMQDIADRLGRGLDEIDACIARTGVMADEIAQVMQENLARRTYTMSLMAMV
                     FLPSTFLTGLFGVNLGGIPGGGWQFGFSIFCILLVVLIGGVALWLHRSKWL"
     gene            5414..6646
                     /gene="dgcM"
                     /locus_tag="JN078_002608"
     CDS             5414..6646
                     /gene="dgcM"
                     /locus_tag="JN078_002608"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DgcM"
                     /protein_id="HAY9041769.1"
                     /translation="MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAARLLMQDLTFSQ
                     LRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRKEEETALSCRLVLRELTETEPVI
                     IFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAA
                     LNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQ
                     TYAGPIEIYGDKLMLCIVHDITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQM
                     QHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGE
                     EFVLLLPRTPLDTALSLAETIRVSVAKVSISSLPRFTVSIGVAHHEGNESIDELFKRV
                     DDALYRAKNDGRNRVLAA"
     gene            complement(6667..7230)
                     /gene="smrA"
                     /locus_tag="JN078_002609"
     CDS             complement(6667..7230)
                     /gene="smrA"
                     /locus_tag="JN078_002609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA endonuclease SmrA"
                     /protein_id="HAY9041770.1"
                     /translation="MNLDDKSLFLDAMEDVQPLKRATDVHWHPTRNQRAPQRIDTLQL
                     DNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMV
                     FSFIHQALADGLRNVLIIHGKGREDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGG
                     SGACYVALRKTAQAKQENWERHAKRSR"
     gene            complement(7560..8468)
                     /locus_tag="JN078_002610"
     CDS             complement(7560..8468)
                     /locus_tag="JN078_002610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY9041771.1"
                     /translation="MAFQVKIHQIRAFVEVARQGSIRGASRMLNMSQPALSKSIQELE
                     EGLAAQLFFRRSKGVTLTDAGESFYQHASLILEELRAAQEDIRQRQGQLAGQINIGMG
                     ASISRSLMPAVISRFHQQHPQVKVRIMEGQLVSMINELRQGELDFTINTYYQGPYDHE
                     FTFEKLLEKQFAIFCRPGHPAIGARSIKQLLDYSWTMPTPHGSYYKQLSELLDEQAQT
                     PQVGVVCETFSACISLVAKSDFLSILPEEMGCDPLHGQGLVMLPVSEILPKAAYYLIQ
                     RRDSRQTPLTPSLITQFRRECGYLQS"
     gene            8644..9944
                     /locus_tag="JN078_002611"
                     /pseudo
     CDS             8644..9944
                     /locus_tag="JN078_002611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415854.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallo-hydrolase"
     gene            9944..11389
                     /locus_tag="JN078_002612"
     CDS             9944..11389
                     /locus_tag="JN078_002612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HAY9041772.1"
                     /translation="MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLA
                     SALESAGFTVTRNVGYIPNAFIASFGQGKPVIALLGEYDALAGLSQQAGCAQPTSVTP
                     GENGHGCGHNLLGTAAFAAAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGV
                     FDDVDAALTWHPEAFAGMFNTRTLANIQASWRFKGIAAHAANFPHLGRSALDAVTLMT
                     TGTNFLNEHIIEKARVHYAITNSGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAK
                     IAEGAALMTETTVECRFDKACSSYLPNRTLENAMYHALSHFGTPEWNSEELAFTKQIQ
                     ATLPPNDRQNSLNNIAATGGENGKAFALRHRETVLANEVAPYAATDNVLAASTDVGDV
                     SWKLPVAQCFSPCFAVGTPLHTWQLVSQGRTSIAHKGMLLAAKTMAATTLNLFIDSGL
                     LQECQQEHQQVTDTQPYHCPIPKNVTLSSLK"
     gene            11426..12952
                     /gene="abgT"
                     /locus_tag="JN078_002613"
                     /pseudo
     CDS             11426..12952
                     /gene="abgT"
                     /locus_tag="JN078_002613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415852.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="p-aminobenzoyl-glutamate transporter"
     gene            12963..13478
                     /gene="ogt"
                     /locus_tag="JN078_002614"
     CDS             12963..13478
                     /gene="ogt"
                     /locus_tag="JN078_002614"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HAY9041773.1"
                     /translation="MLRLLEEKIATPLGPLWVICDEQFRLRAVEWEEYSERMVQLLDI
                     HYRKEGYERISATNPGGLSDKLSDYFAGNLSIIDTLPTATGGTPFQREVWKTLRTIPC
                     GQVMHYGQLAEQLGRPGAARAVGAANGSNPISIVVPCHRVIGRNGTMTGYAGGVQRKE
                     WLLRHEGYLLL"
     gene            13673..14425
                     /locus_tag="JN078_002615"
     CDS             13673..14425
                     /locus_tag="JN078_002615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007849744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FNR family transcription factor"
                     /protein_id="HAY9041774.1"
                     /translation="MIPEKRIIRRIQSGGCAIHCQDCSISQLCIPFTLNEHELDQLDN
                     IIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFD
                     AIGSGHHPSFAQALETSMVCEIPFETLDDLSGKMPNLRQQMMRLMSGEIKGDQDMILL
                     LSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRF
                     QKSGMLAVKGKYITIENNDALAQLAGHTRNVA"
     gene            14577..15527
                     /gene="uspE"
                     /locus_tag="JN078_002616"
     CDS             14577..15527
                     /gene="uspE"
                     /locus_tag="JN078_002616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspE"
                     /protein_id="HAY9041775.1"
                     /translation="MAMYQNMLVVIDPNQDDQPALRRAVYLHQRIGGKIKAFLPIYDF
                     SYEMTTLLSPDERTAMRQGVISQRTAWIHEQAKYYLNAGVPIEIKVVWHNRPFEAIIQ
                     EVISGGHDLVLKMAHQHDRLEAVIFTPTDWHLLRKCPSPVWMVKDQPWPEGGKALVAV
                     NLASEEPYHNALNEKLVKETIELAEQVNHTEVHLVGAYPVTPINIAIELPEFEPSVYN
                     DAIRGQHLLAMKALRQKFGINENMTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGI
                     SAAFLGNTAEQVIDHLRCDLLVIKPDQYQTPVELDDEEDD"
     gene            complement(15577..15835)
                     /locus_tag="JN078_002617"
                     /pseudo
     CDS             complement(15577..15835)
                     /locus_tag="JN078_002617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309940.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2534 family protein"
BASE COUNT         4135 a         3950 c         3913 g         3961 t
ORIGIN      
        1 atgatatgtc taaattacca acaggtgtcg agattcgagg taaatacatt cgcatctggt
       61 tcatgtttcg aggaaaacga tgtcgggaaa cattgaaagg ctgggagatt actaacagta
      121 acattaaaaa ggccgggaat ttaagagcgt tgatagttca tgaaatcagt tccggtgaat
      181 ttgagtattt aagacgtttt ccccagtcca gcactggggc aaaaatggtg acaacgaggg
      241 tcataaaaac attcggggag ctttgtgata tctggacaaa aattaaagag acagagttaa
      301 caacaaacac aatgaagaaa acgaaatcac aattaaaaac actcaggata ataatttgtg
      361 agagtacccc gatatcgcat attcgttata gcgatatctt aaactaccgg aatgaactgc
      421 tgcatggaga aacgctttac ctagataatc caagatccaa caaaaaagga agaaccgtgc
      481 gcacagttga tagctatatc gccctgctct gttcgttgtt acgttttgcg tatcagtcgg
      541 gatttatatc aaccaaacca tttgaaggag taaaaaaatt acagcgaaac agaataaaac
      601 ctgacccgtt atctaaaaca gaattcaatg cattaatgga aagtgaaaaa ggacagagcc
      661 aaaacttgtg gaaatttgcc gtttactccg ggcttcgtca cggggaactg gcagctctgg
      721 cgtgggagga tgtggatttc gagaagggaa ttgtgaatgt cagaagaaac ctgacgatac
      781 ttgatatgtt cggtccccca aaaacaaatg ccgggatccg gacggtaaca ttactgcagc
      841 cggctcttga agcactgaag gagcaataca aactgaccgg gcatcatcgc aaaagcgaaa
      901 tcacttttta tcatcgggag tacggcagaa ctgaaaagca aaaactgcat tttgttttca
      961 tgcccagggt gtgtaacgaa aaacagaaac cttattactc ggtaagcagt ttgggtgcaa
     1021 gatggaatgc agcagtaaaa cgtgctggta ttcgccgccg taatccgtac catacgcgac
     1081 atacttttgc ctgctggctg ttgacggcag gagcgaaccc ggcatttata gccagccaga
     1141 tggggcatga aactgcgcaa atggtgtatg aaatttacgg tatgtggatt gatgacatga
     1201 acgacgaaca gatagccatg ttgaatgcgc ggttatcgta gttgcaaagt ttgcccccaa
     1261 tttgccccat ttagtaccag agaactgaaa taatgcaaga aaatcaacaa attacaaaga
     1321 aagaacaata cagcctgaac aaattacaaa aacgtctacg tcgtaacgtg ggcgaagcca
     1381 ttgctgactt caatatgatt gaagaaggcg atcgcatcat ggtttgcctc tcagggggta
     1441 aagacagcta taccatgctg gagattctgc gcaatttgca gcaaagcgcg ccaatcaatt
     1501 tttcgctggt ggctgttaac ctcgatcaaa agcaaccggg cttcccagaa cacgttctgc
     1561 ccgtgtatct tgaaaagctg ggcgttgagt acaagattgt cgaagagaac acttacggta
     1621 tcgtgaaaga gaagattcca gagggcaaaa ccacttgctc actgtgttct cgccttcgtc
     1681 gcggtatcct ttatcgtacc gcaacggaac tgggggcgac gaagatcgcg ctgggtcacc
     1741 atcgtgacga tatcctgcag acgttgttct taaatatgtt ctacggcggc aagatgaaag
     1801 gtatgcctcc gaaactgatg agcgatgatg gcaaacatat cgttattcgt ccgctggcct
     1861 actgccgcga gaaagatatt cagcgatttg ccgatgcaaa agcgttcccg attattccgt
     1921 gcaacctgtg cggttcacag cctaacctgc aacgtcaggt gattgctgac atgttgcgtg
     1981 actgggataa acgttatcca gggcgtatcg agacgatgtt cagcgcgatg cagaatgtgg
     2041 tgccgtcgca tctgtgcgat accaacctgt tcgatttcaa aggcatcacc cacggttctg
     2101 aagtggttaa cgggggtgat ctggcgtttg atcgcgaaga gatcccacta caaccggcgg
     2161 gctggcagcc agaagaagat gaaaatcagt tggatgagtt acggctgaat gtggttgaag
     2221 tgaaataacc aggatagcgc ccgatgcgca agcgtatcgg gctactctta tggaggccgg
     2281 ataagacgcg gccaacgtcg catccggcaa tgccgaagaa gatgtttact cttgcacccg
     2341 gcaattcaac atttcattat tttaataacc gcacccggca cgtttttcct ttaatcttcc
     2401 cgccctgtaa ctgtttccat gctttatgag caacagcctg acggaccgcg acatagacat
     2461 gcgccggatg cacggcgatt ttgccaatat ctgcgccatc aagcccgata tctcctgtca
     2521 gtgcacctaa tacatcaccc gggcgcattt tggctttttt cccgccatcg atacacaacg
     2581 ttgccatttc tgcttccagc ggcacaatgg aactattagc tggcggcgtt tgccagttaa
     2641 gttttatctg caacatgtca gaaatgatat tggcccgctg tgcttcttcc ggagcacaga
     2701 aactgatcgc cagaccgcta tttcctgcac gagctgtacg gccgatgcga tgtacatgaa
     2761 cttcagggtc ccacgccagc tcaaagttca ccaccagctc aagcgattta atatccagac
     2821 cacgcgcagc aacatcagtc gcaaccagta cacgggcgct accgttagca aaacgtacca
     2881 gggtctgatc gcgatcgcgt tgctccaaat cgccgtgtaa tgacaatgca ctttgcccta
     2941 cttcattcag cgcgtcgcag acagcctggc aatctttttt ggtattgcaa aacaccacgc
     3001 aagaggatgg ctgatgcaag cttaataacc gttgcaacag aggaattttg cctttgctgg
     3061 atgtctcata aaattgttgt tcaatgggtg gcaaagcatc tgttgagtca atttcaatcg
     3121 ccaaaggatc gcgttgcact cgtccgctga ttacggcgat ggcttccggc caggttgccg
     3181 aaaacagaag cgtctgtcga gatgcaggcg caaaacggat gacatcatca atggcatcgc
     3241 taaatcccat atccagcatg cggtcggcct catccatcac caaagtattc agcgcatcca
     3301 gtgataccgt gcctttttgc aagtgatcca gcaaacgacc cggcgttgcc acgataatat
     3361 gcggcgcatg ttgcaacgaa tcacgctgca taccgaacgg ttgaccaccg cacaacgtca
     3421 aaattttggt atttggcaga aaacgcgcca gccgacgcaa ttcacctgcc acctgatccg
     3481 ccagttcacg cgtaggacac agcactaaag cctgggtttg aaatagcgac gcatcaattt
     3541 gctgtaacaa gccgaggcca aaagccgccg ttttgccgct gccggttttc gcctgcacgc
     3601 gaacatcttt tccggcaagg atcgccggaa gcgcggcggc ctgcaccggc gtcatagtta
     3661 aataacccaa ctcattaagg ttcgtgagtt gggcgggagg caaaacattc agggtagaaa
     3721 aagcggtcac aatctattct cgtggtcatc gacgcaaagt tagcaggcgc gtatcctcgc
     3781 agatctacgc gggtggtggg tcaggcatgg gttgcgggcg agggatcgga tcgggcactg
     3841 gaacaggatc gccaggaatc ggttcaggga caggaatttg caaataaata agtgtcgtca
     3901 tatttccctc cggtcattgg gtggactctt aaagggtaga cgctgataaa taacaggcaa
     3961 aaaaaagccg actcatcaaa gtcggcgtcg tacgaatcaa ttgtgctatg cagtaattca
     4021 aaaaaggaag taagacaata tggagcgcaa cgcccatcgc ttgacgttgc attcacctgc
     4081 aagggagata ttgccctgaa tgggtagaga gtttattgac ttcgctcaaa ctttgcggcg
     4141 tttttgtata cagacagccg gaaaaattgc ttttgttaca accatttact acgatgcaac
     4201 cataaagcaa caccaccaat aagaacaact aacagaatac aaaaaattga aaatccgaat
     4261 tgccacccgc cgccagggat cccaccaagg ttgacgccaa ataaccctgt cagaaaggta
     4321 ctgggtaaaa agaccattgc catcaatgac attgtatagg tacgacgagc taaattttcc
     4381 tgcatcacct gagcgatttc atccgccatc acgccagtcc gtgctataca ggcgtcgatt
     4441 tcgtcaagac cgcgcccaag gcgatcggca atatcctgca tccgacggcg ttggtcatcg
     4501 ctcatccacg gcaaacgttc actggcaaga cgagcataaa catcacgttg cggtgccata
     4561 tagcgacgca tcacgattaa ttgtttgcgc agcagagcca ggaatccacg cggtggaatt
     4621 tgctgatcaa ggagattatc ttcaaggtcg ataattttat cgtgcagctg ctcgataaat
     4681 tcgctggaat gatcggtcaa cgcatcgcac acatccacca gccaccctcc gcaatcggtc
     4741 ggacccgtgc cctcttccag atcgctcacc acatcgtcca gcgccagcac tttgcgttgt
     4801 cgggtcgaaa caattaaccg cccgtccata tatacacgca tggcgaccag ttgatcgggg
     4861 cgttcatcgg tgctgccgtt tatacagcgc aatgtaatca gcgtgccttc accgagacgg
     4921 ctgactcggg gccgtgtgct ctcgcctgcc agcgcatcac gtacgttatt gggaagcagc
     4981 ggtgttgtcg ccagccattg ggcgctatca tggtgtacat aattaaggtg gagccagcag
     5041 ggatgcgctt catcaatcac atctgtattt tccagcggtt taacgccgcc tctaccatcc
     5101 agcatccagg caaatactgc atccgggaca ttaacgtccg atcccttaat cgcttccaca
     5161 gtgcctccat catcaacgca ttattttgta gtctagcctt ctggccctgt tacgcaacat
     5221 ctcatcaccc cattaccctg aaatgattaa taaaattctg tctaaattga atacaaaaag
     5281 caaaatgctt ttccgtatac aaaccgtgtg aagtgttaaa tagcgtctat cattatcaga
     5341 attatctgat catatgacgt ggcttttttg cgatcggata gcaacaaaaa ttgataaaaa
     5401 taacgggatc tcaatgatta cgcacaactt caataccctg gacttactca ccagtcctgt
     5461 ctggattgtt tcgccctttg aggaacagtt aatttatgcc aatagcgcgg cgcgactgtt
     5521 gatgcaagac ctcacgttta gtcagctacg aaccggaccc tattccgtct cctcacaaaa
     5581 agaactgccg aaatacctct ccgatctgca aaaccaacac gatattatcg aaatcctcac
     5641 tgttcagcgt aaagaagagg aaacagcatt aagctgtcgg cttgttttgc gagagctgac
     5701 agaaacagaa ccggtgatta ttttcgaagg tatcgaagcg ccggcaacgc tgggtttaaa
     5761 agccagtcgc tcggcaaatt atcagcgcaa aaaacaaggt ttttatgcgc gcttttttct
     5821 gactaactct gcaccaatgt tgttgattga cccctcacga gatggccaaa tcgtcgatgc
     5881 taacctcgcc gcgctcaatt tctacggtta taaccatgaa acgatgtgcc aaaaacatac
     5941 ctgggaaatt aatatgctcg ggcgtcgcgt catgcctatc atgcatgaaa tttcgcattt
     6001 acccggcggt cataaacctt tgaattttgt tcataaactg gcggatggat ctactcgtca
     6061 tgtgcagacc tatgccgggc cgattgaaat ttatggcgac aagctcatgt tatgtattgt
     6121 gcatgatatt actgagcaaa aacggctgga ggagcagctg gaacatgctg ctcaccatga
     6181 cgcgatgacc ggattactga atcggcgaca gttttatcac attacggaac caggccaaat
     6241 gcagcacctc gccatcgccc aggattacag cttgttgctc atcgacaccg atcgttttaa
     6301 acacattaac gatctctatg ggcattctaa aggtgatgag gtgttatgcg ccctcgcccg
     6361 caccctcgaa agttgcgctc gcaaaggcga tttggtgttt cgttggggag gcgaagagtt
     6421 tgtcttattg ctaccaagaa ccccactgga taccgcgctt tcgctggctg aaactatccg
     6481 tgtaagcgtg gccaaagtga gtatttcgag cttaccacgt tttaccgtca gcattggtgt
     6541 ggcgcatcac gaaggaaatg aaagcatcga tgaactgttt aaacgcgttg atgatgcttt
     6601 gtatcgggcg aaaaatgatg gacgcaaccg cgtgctggcg gcataagccg cggatgcgtc
     6661 tcgagatcaa cggctgcgct tagcgtggcg ctcccagttt tcttgcttcg cctgcgccgt
     6721 tttacgtagt gcgacgtaac acgccccgct gccgccatga tgcggtagcg cggtgcaata
     6781 tgcctgaaca tcatcaaatt cggtcagcca gcgcgccaca tagctgcgga caatattggc
     6841 atgcgattta tcttcccgcc ctttaccatg aataatcagc acattacgca aaccatccgc
     6901 cagggcttgg tgaatgaaac tgaacaccat tttgcggcac tcttccaccg gctggcgcaa
     6961 aagattcagg ctcgcctgtt gcggatattt accactgcgc agcttatcca gcaccccatg
     7021 ttgcaaccct tcccgccgaa actccagcgg ctgacttagc gggatgatgt cgagaaatcc
     7081 ggtggtgagg aaattatcaa gctgcagcgt gtcgatacgc tgcggcgcac gttggttacg
     7141 cgttggatgc cagtggacat ctgtagcacg tttcagcggc tggacatctt ccatggcgtc
     7201 aagaaacagc gatttgtcgt caaggttcat gttacatcct cccgcaatta agagcgcgat
     7261 atgataacca gaccgggtcg gtccaacaac gtattaccaa aaattccagt aataagttcc
     7321 aaatattgcc gatattttaa gcaaaatgct tatgcatgat tattcattca cgatattaat
     7381 aatgtaactt atattttcgt gaaatctgtc actgaagaaa attggcaact aaaggttaaa
     7441 accgttataa cacagtcacc ggcgcagagg agacaatgcc ggacttaaga cgcggatgca
     7501 ctgctgtgtg tactgtagag tctggcggat gtcgacagac tctatttttt tatgcagttt
     7561 taactttgca gatagccgca ttctcgccgg aattgcgtga ttaatgacgg ggtcagtggt
     7621 gtctggcgac tatcacgccg ctgaatcaaa taataggccg ctttcggtaa aatttcgcta
     7681 accggcaaca tcaccagccc ctgtccgtgc aagggatcgc agcccatttc ttcaggcagt
     7741 atgctgagaa aatcgctttt tgccaccaga ctgatacagg ctgagaacgt ctcgcagact
     7801 acaccgacct gtggcgtttg cgcctgctcg tcaagcaatt cactcaactg tttgtagtaa
     7861 ctgccgtgtg gcgtcggcat tgtccagctg taatccagta actgtttgat cgaacgggca
     7921 ccaatggcgg ggtgtcccgg gcggcaaaag atcgcgaatt gcttttccag taatttctca
     7981 aaagtaaatt cgtggtcgta cggtccctga taataggtat tgatggtgaa atccaattct
     8041 ccctgacgca attcattaat catcgacacc agttgccctt ccataatgcg tacttttacc
     8101 tgcggatgct gctgatgaaa acgagatatg acagctggca tcagactgcg ggaaatactg
     8161 gcccccatgc cgatattaat ctgccctgcc agttgccctt gtcgttggcg aatatcctct
     8221 tgggctgcgc gcagctcttc aagaataaga ctggcgtgct gataaaaact ttcaccggca
     8281 tcagttaacg tcacgccttt actacggcga aaaaagagtt gcgccgctaa tccttcttcc
     8341 aactcctgaa tagatttact cagtgccggt tgcgacatat tcaacattcg gctcgctccg
     8401 cgaatgctgc cctgacgagc cacttcaaca aaagcacgaa tttgatgaat ttttacctga
     8461 aaagccatga cgccaccgat aaccgttatt tatcagacca aagaaactgg catctacttt
     8521 aatgcagatg attgtgtcag ggtaatttat gaacggttaa aactgtgaaa aatcagttag
     8581 tgataagtaa aaactatcgc tacgtgaacc gggtcacact ttttactgat gacgggaaag
     8641 gttatggagt ctttgaatca atttgttaat tcgcttgccc caaaattatc gcactggcga
     8701 cgtgattttc atcactatgc agagtctggc tgggtggaat tccgcactgc cacccttgtt
     8761 gcggaagaat tgcagcagct cggctattca ctggcgctgg gccgcgaagt agttaatgaa
     8821 agtagccgga tgggactacc tgatgaactc actctacaac gcgaattcga gcgcgctcgt
     8881 caacagggtg cgctagcaca atggattgcg gtttttgaag gtggtttcac tggtatcgtc
     8941 gccaccctgg ataccggtcg ccccggtccg gtgatggctt tccgtgtcga tatggacgcg
     9001 ctggatctca gtgaagagca ggatgtcagc catcgcccct accgcgacgg ttttgcgtca
     9061 tgtaacgccg gaatgatgca tgcctgtggt catgatggac ataccgccat tgggcttggg
     9121 ctagcgcata cccttaaaca attcgagtcc ggactacatg gcgtcatcaa actgattttt
     9181 cagcctgcag aggaaggtac gcgtggcgcg cgggcgatgg tcgatgcagg tgtcgtagat
     9241 gatgttgatt attttactgc cgtgcacatt ggcactggcg tacctgcggg caccgtggtg
     9301 tgcggcagtg ataattttat ggcaaccacc aaatttgacg cgcacttcac cggtaccgcc
     9361 gctcacgcag gcgcaaaacc agaagacggt cacaatgcct tgttggcggc agcacaagcc
     9421 actcttgcac tgcatgcaat cgccccggag cttccagagt aaacgtgggc gttatgcagg
     9481 caggaagcgg tcgtaacgtt gttcctgcct cggcgttgct gaaagtggaa acacgcgggg
     9541 ccagcgacgt cattaatcaa tatgtttttg accgtgcaca acaagcgatt cagggcgcag
     9601 caaccatgta tggtgtcggc gttgaaactc gtctgatggg tgcagctacc gccagttctc
     9661 cttcgccgca atgggtcgca tggttgcaaa gtcaggcggc tcaggtcgcg gggggcaatc
     9721 aggccattga acgtgttgaa gcgcctgcgg gttccgaaga tgccacatta atgatggccc
     9781 gcgtgcagca acatcaaggg caagcctcct acgtggtgtt tggcacacag ctggcggcag
     9841 gtcatcacaa cgaaaaattc gattttgacg agcaggttct cgctattgcc gtcgaaacgc
     9901 tggcgcgcac cgcgctcaat tttccctgga cgcgaggtat ctgatgcagg aaatctatcg
     9961 ttttatcgac gatgcgattg aagccgatcg ccaacgttat accgatattg ccgatcaaat
    10021 ctgggatcat ccagaaacac gttttgaaga gttctggtca gcggagcatc tggcttcggc
    10081 gctggaatct gcaggcttca ccgttacccg caacgtaggc tatatcccaa atgcctttat
    10141 tgcttcgttt ggtcaaggca aaccggttat cgccctgctg ggagaatatg acgccctggc
    10201 aggtttaagt cagcaagcag gttgcgcgca acctacatcc gtgacgcccg gtgaaaatgg
    10261 tcacggttgc ggacacaatt tgctgggaac cgccgccttt gccgctgcaa tagccgtcaa
    10321 gaaatggctg gaacaatatg ggcaaggcgg cacggtgcgc ttttatggtt gtcctggcga
    10381 agaaggcggc tcgggtaaaa cgttcatggt tcgcgagggg gtatttgatg atgtggatgc
    10441 ggcactcact tggcacccgg aagcctttgc cggtatgttc aatacccgca cgctggcaaa
    10501 cattcaggca tcatggcgct ttaaagggat cgcagcacat gccgcgaatt tccctcattt
    10561 gggacgcagc gcccttgatg ccgtaacgtt gatgaccact ggcaccaact tcctcaacga
    10621 acatattatt gaaaaagcgc gcgtacacta tgccatcaca aatagcggcg ggatctcgcc
    10681 caacgtggtc caggcgcagg cagaagtgct ttatcttatc cgcgcccccg aaatgaccga
    10741 cgtgcagcat atttatgatc gggtcgccaa aatcgccgaa ggtgcggcat tgatgaccga
    10801 aaccacggtt gaatgccgct tcgacaaagc ctgttccagt tatctcccga atcgcacctt
    10861 agaaaatgcc atgtaccatg ccctatccca ttttggtacc ccggaatgga actccgaaga
    10921 actggctttt acgaaacaaa ttcaggctac gctccccccc aacgatcggc aaaacagtct
    10981 gaataatatc gccgcaaccg gtggcgaaaa cggcaaggct tttgcactac gtcatcgtga
    11041 aacggtactg gcgaatgagg tcgctccata tgccgccacc gataacgtgc ttgcggcatc
    11101 gactgatgtc ggcgacgtca gttggaaact gcctgttgcc cagtgtttca gcccctgttt
    11161 tgccgtcggt acaccgctac atacgtggca actggttagc caggggcgaa catctattgc
    11221 tcataaagga atgctgctgg cggcgaaaac tatggcagca accacactca atctcttcat
    11281 tgattcaggg ctattgcaag aatgccaaca agagcatcag caagttacgg acacgcaacc
    11341 gtatcactgc cctatcccaa aaaacgtgac actgtcatct ttaaaataac aacaacaacg
    11401 caaacacaac aaccgaggaa tgcccatgag tatgtcatcc ataccgtcgt cctcctaatc
    11461 cgggaagctc tatggctggg tcgaaagaat tggtaacaag gttccccatc cttttttgct
    11521 ctttatctat ttgattatcg tactcatggt gacgacggca attttgtcgg cctttggcgt
    11581 cagtgcgaaa aacccgaccg atggaacgcc ggtggtggtg aaaaacctgc tcagtgtgga
    11641 aggattacac tggtttttac ccaatgttat taaaaacttt agcggttttg ctccacttgg
    11701 tgcgatcctg gcgctggttt taggtgccgg tctggcggag cgcgtcggct tactgccagc
    11761 gctaatggtt aaaatggcat cgcatgttaa tgtccgctac gccagttata tggtgctgtt
    11821 tattgctttt ttcagccaca tttcttccga tgcggcgtta gtgatcatgc caccgatggg
    11881 tgcgctgatt tttctggcgg tgggcaggca tccagttgca ggtttactgg ctgccattgc
    11941 aggcgtaggt tgcggcttta cggctaattt actgattgtc acaaccgacg tgttgctgtc
    12001 ggggatccgc acggaagcgg cggctgcgtt caatccgcaa atgcacgtca gtgtaattga
    12061 taactggtat tttatggcca gctccgtagt cgtactgacg attgttggcg gcctgataac
    12121 cgacaaaatc atcgagccac ggttaggtca atggcaggga aacagcgatg agaaactgca
    12181 gacattgacc gaaagtcagc gttttggttt acgcatagca ggtgtcgtat cgctactttt
    12241 tattgctgcg atcgcgctga tggtgatccc ggaaaacggg atattgcgcg atccgattaa
    12301 tcacaccgtg atgccatcac cctttattaa aggtatcgtg ccactaatca ttcttttttt
    12361 ctttgtggtt tcgctggctt atggcatcgc tacccgcaca attcgacatc aggcggattt
    12421 accgcattta atgattgaac cgatgaaaga gatggcggga tttatcgtga tggtttttcc
    12481 cctcgcccag tttgtcgcca tgtttaactg gagcaacatg gggaaattca tcgccgtggg
    12541 gctgaccgat atactggaaa gttcagggct tagcggcatc ccggcgtttg tcggtctggc
    12601 gttgctttcc tctttcttat gcatgtttat tgccagtggt tccgcaatct ggtcgattct
    12661 ggcccccatt ttcgtaccaa tgtttatgct acttggcttt cacccggcat ttgcgcaaat
    12721 cctctttcgt attgccgact catccgtatt gcctttagcg ccggtatctc cttttgttcc
    12781 actgtttctt ggattcctgc aacgctacaa accagacgcg aaactgggta cttactattc
    12841 gttagtcttg ccctatccgc ttatcttttt ggtggtatgg ctgctgatgt tgctggcgtg
    12901 gtatcttgtt ggtctgccga taggtccggg gatttaccca cgtttgtctt aagagagaac
    12961 ggatgctgag attacttgaa gaaaaaattg ccacgccact gggtccactg tgggtgattt
    13021 gcgatgagca atttcgcctg cgggcggttg aatgggaaga gtacagcgaa cgcatggtgc
    13081 agctgctgga catccattat cgcaaagaag gctatgagcg catttctgcc accaacccag
    13141 gcggtttaag cgacaagctt agtgattatt ttgccggtaa tcttagcatt attgatacgc
    13201 ttcccactgc cacagggggg acgccatttc agcgcgaagt ctggaaaact ctacgcacta
    13261 tcccctgcgg gcaggtaatg cattacggcc aactggctga acaattgggc cgccctggcg
    13321 cggcgcgtgc cgttggtgcg gcaaacggat cgaatcccat cagcatcgtc gtaccttgcc
    13381 atcgggttat tggccgaaac ggcaccatga ccggatatgc aggcggagtt cagcgaaaag
    13441 agtggttatt gcgccacgaa ggttatcttt tgctgtaaac attaaacaat ttgtgccagc
    13501 ttgttcacac ttttatgtaa agttaccctt aacaacttaa tggttttcaa atagatagac
    13561 atatatttac atctaatatc ggaattctct gctgttaagg tttgcttaga cttacttgct
    13621 ccctaaaaag atgttaaaat tgacaaatat caattacggc ttgagcagac ctatgatccc
    13681 ggaaaagcga attatacggc gcattcagtc tggcggttgt gctatccatt gccaggattg
    13741 cagcatcagc cagctttgca tcccgttcac actcaacgaa catgagcttg atcagcttga
    13801 taatatcatt gagcggaaga agcctattca gaaaggccag acgctgttta aggctggtga
    13861 tgaacttaaa tcgctttatg ccatccgctc cggtacgatt aaaagttata ccatcactga
    13921 gcaaggcgac gagcaaatca ctggtttcca tttagctggc gacctggtgg gatttgacgc
    13981 catcggcagc ggccatcacc cgagcttcgc tcaggcgctg gaaacctcga tggtatgtga
    14041 aatcccgttc gaaacgctgg acgatttgtc cggtaaaatg ccgaatctgc gtcagcagat
    14101 gatgcgtctg atgagcggtg aaatcaaagg cgatcaggac atgatcctgc tgttgtcgaa
    14161 gaaaaatgcc gaggaacgtc tggctgcatt catctacaac ctgtcccgtc gttttgccca
    14221 acgcggcttc tcccctcgtg aattccgcct gacgatgact cgtggcgata tcggtaacta
    14281 tctgggcctg acggtagaaa ccatcagccg tctgctaggt cgcttccaga aaagcggtat
    14341 gctggcagtc aaaggtaaat acatcaccat cgaaaataac gatgcgctgg cccagcttgc
    14401 tggtcatacg cgtaatgttg cctgattttt ccgcataact cactatcctt ctgtcatatc
    14461 attaaatttt tctgatttat tgatctggca gaaggttcat cactgtttca ttcaccagat
    14521 atgggttaat cttttaatta caaactgcgt tgacagttgt tgtaaggaga ccctgtatgg
    14581 ctatgtatca gaacatgctc gttgttatcg atcctaacca ggacgaccaa ccagcattgc
    14641 ggcgagctgt ttatttacat caacggattg gtggcaaaat taaagccttt ttgccgatct
    14701 atgacttctc atacgaaatg accaccctgc tctccccgga cgaacgtacc gctatgcgtc
    14761 agggcgtcat cagccagcgt acagcctgga tccacgagca ggcaaaatat tatctcaatg
    14821 ctggcgttcc cattgaaatt aaagtggtct ggcataaccg tcctttcgaa gccatcattc
    14881 aggaagtgat cagcggcggg cacgatttgg tgctaaaaat ggcgcaccaa catgaccgtc
    14941 tggaagcggt gatttttacg ccaacggact ggcatctgtt acgcaaatgc ccaagcccgg
    15001 tgtggatggt gaaagaccag ccgtggccgg aaggaggtaa ggcgctggtg gcggtgaatc
    15061 tcgccagtga agagccgtat cataatgcgc tcaatgaaaa actggtcaaa gagacgatcg
    15121 aactggcaga acaagtcaac cataccgaag ttcatctggt tggcgcttac ccagtaacgc
    15181 caattaatat cgcgattgaa ctgccggaat ttgagccgag cgtttataac gatgccattc
    15241 gtgggcaaca tttgctggca atgaaagccc tgcggcagaa attcggcatt aatgaaaaca
    15301 tgacgcacgt agaaaaaggt ctgcccgaag aggttattcc tgatttggcg gagcacttac
    15361 aggcggggat tgtggttctg ggcacggtag gacgcaccgg tatttcagca gcattcctcg
    15421 gcaacacggc ggaacaggtg attgatcatc ttcgctgcga tctgttggtc attaaacctg
    15481 accagtatca gacacccgtt gaactggatg acgaagaaga cgattaacga ctcttcaata
    15541 actgacaagg cccgagttat cgggcctatt ttttacttac tgctcttcgc cgccaaggaa
    15601 ataaattccc aacgggattg ccagcaacac agtaaagacc aggctataaa caaaaatcat
    15661 cgatgactga atcacataca ttgatgtcgt ccactcagac agcggaatat tgtactgttc
    15721 tataacgccg ccgatagtcg cgcgagtcac aaccgacgcc gcaataatga caaaccgcca
    15781 acaaaccaaa gagaaatttc ttccctttcg ctgacttcag tttcgccata atcatgatgt
    15841 aatccttgtg cagacaaatt tcttgttacc taaacgtaac aataccatga catttcaccg
    15901 ttgtctgctc tgaaaacctc acctcttagc tggatttaca atcaacgcat tgattagtt
//
LOCUS       DADMJB010000096        15634 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.096, whole genome shotgun sequence.
ACCESSION   DADMJB010000096 DADMJB010000000
VERSION     DADMJB010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15634)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15634)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15634
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.096"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            331..423
                     /locus_tag="JN078_002618"
                     /pseudo
     CDS             331..423
                     /locus_tag="JN078_002618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004120448.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
     gene            427..606
                     /locus_tag="JN078_002619"
                     /pseudo
     CDS             427..606
                     /locus_tag="JN078_002619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310134.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimH domain protein"
     gene            940..3219
                     /gene="ydeP"
                     /locus_tag="JN078_002620"
     CDS             940..3219
                     /gene="ydeP"
                     /locus_tag="JN078_002620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance putative oxidoreductase YdeP"
                     /protein_id="HAY9041776.1"
                     /translation="MKKKIESYQGAAGGWGAVKSVANAVRKQMDIRQDVIAMFDMNKP
                     EGFDCPGCAWPDPKHTASFDICENGAKAIAWEVTDKQVNASFFAENTVQSLLTWGDHE
                     LEAAGRLTQPLKYDAVSDCYKPLSWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAA
                     FLYQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLEDFEKCDLVICIGHN
                     PGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYY
                     NVRIGGDMALLKGMMRLLIERDDAASAAGRPSLLDDEFIQTHTVGFDELRRDVLNSEW
                     KDIEHISGLSQTQIAELADAYAAADRTIICYGMGITQHEHGTQNVQQLVNLLLMKGNI
                     GKPGAGICPLRGHSNVQGDRTVGITEKPSAEFLARLGERYGFTPPHAPGHAAIASMQA
                     ICTGQARALICMGGNFALAMPDREASAVPLTQLDLAVHVATKLNRSHLLTARHSYILP
                     VLGRSEIDMQKSGAQAVTVEDSMSMIHASRGVLKPAGVMLKSECAVVAGIAQAALPQS
                     VVAWEYLVEDYDRIRNDIEAVLPEFADYNQRIRHPGGFHLINAAAERRWMTPSGKANF
                     ITSKGLLEDPSSAFNSKLVMATVRSHDQYNTTIYGMDDRYRGVFGQRDVVFMSAKQAK
                     ICRVKNGERVNLIALTPDGKRSSRRMDRLKVVIYPMADRSLVTYFPESNHMLTLDNHD
                     PLSGIPGYKSIPVELEPSN"
     gene            3467..3664
                     /gene="safA"
                     /locus_tag="JN078_002621"
     CDS             3467..3664
                     /gene="safA"
                     /locus_tag="JN078_002621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system connector SafA"
                     /protein_id="HAY9041777.1"
                     /translation="MHATTVKNKITQRDNYKEIMSVIVVVLLLTLTLIAIFSAIDQLG
                     ISEMGRIARDLTHFIINSLQD"
     gene            3739..4500
                     /gene="ydeO"
                     /locus_tag="JN078_002622"
     CDS             3739..4500
                     /gene="ydeO"
                     /locus_tag="JN078_002622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid stress response transcriptional regulator
                     YdeO"
                     /protein_id="HAY9041778.1"
                     /translation="MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY
                     ERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERN
                     HHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKLAHPWKLKDICDCL
                     YISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYA
                     FRKHFGNSPKRVSKEYRCQSHTGMNTGNTMSALAI"
     gene            4902..6584
                     /locus_tag="JN078_002623"
     CDS             4902..6584
                     /locus_tag="JN078_002623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416015.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HAY9041779.1"
                     /translation="MKSALKKSVVSTSISLILASGMAAFAAHAADDVKLKATKTNVAF
                     SDFTPTEYSTKGKPNIIVLTMDDLGYGQLPFDKGSFDPKTMENREVVDTYKIGIDKAI
                     EAAQKSTPTLLSLMDEGVRFTNGYVAHGVSGPSRAAIMTGRAPARFGVYSNTDAQDGI
                     PLTETFLPELFQNHGYYTAAVGKWHLSKISNVPVPEDKQTRDYHDNFTTFSAEEWQPQ
                     NRGFDYFMGFHAAGTAYYNSPSLFKNRERVPAKGYISDQLTDEAIGVVDRAKTLDQPF
                     MLYLAYNAPHLPNDNPAPDQYQKQFNTGSQTADNYYASVYSVDQGVKRILEQLKKNGQ
                     YDNTIILFTSDNGAVIDGPLPLNGAQKGYKSQTYPGGTHTPMFMWWKGKLQPGNYDKL
                     ISAMDFYPTALDAADISIPKDLKLDGVSLLPWLQDKKQGEPHKNLTWITSYSHWFDEE
                     NIPFWDNYHKFVRHQSDDYPHNPNTEDLSQFSYTVRNNDYSLVYTVENNQLGLYNLTD
                     LQQKDNLAAANPQVVKEMQGVVREFIDSSQPPLSEVNQEKFNNIKKALSEAK"
     gene            6636..7793
                     /locus_tag="JN078_002624"
     CDS             6636..7793
                     /locus_tag="JN078_002624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416014.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HAY9041780.1"
                     /translation="MHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIK
                     QYIAASGNQVYFTWQGGEPTLAGLDFFRKVIHYQQRYAGQKRIFNALQTNGILLNNEW
                     CSFLKEHEFLVGISNDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVI
                     NNVNVHYPLEVYHFLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAY
                     GKFMSTIFMQWVKNDVGEIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIY
                     ECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRISAKCQQCAYKPICNGGCPKHRIT
                     KVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN"
     gene            complement(7759..7881)
                     /locus_tag="JN078_002625"
     CDS             complement(7759..7881)
                     /locus_tag="JN078_002625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041781.1"
                     /translation="MTKHPTGIYVGCLVKVIRRRLRMELKESVINYSPFVLQHP"
     gene            8096..9781
                     /locus_tag="JN078_002626"
     CDS             8096..9781
                     /locus_tag="JN078_002626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HAY9041782.1"
                     /translation="MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILG
                     VVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPALLGIFVLISVNKTWLIKLLTIR
                     WREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQ
                     SLSMLITFTVILWQSAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRP
                     LNVEKQRSEATFRTNLVQHNKQAELIALSNAESLQRQELRDNFHTIKENWHRLMNRQR
                     LLDYWQNIYSRSLSVLPYFLLLPQFISGQINLGGLMKSRQAFMLVSNNLSWFIYKYDE
                     LAELAAVIDRLYEFHQLTEQRPTNKPKNCQHAVQVANASIRTPDNKIILENLNFHVSP
                     GKWLLLKGYSGAGKTTLLKTLSHCWPWFKGDIFSPADSWYVSQTPLIKTGLLKEIICK
                     ALPLPVDDKSLSEVLHQVGLGKLAARIHDHDRWGDILSSGEKQRIALARLILRRPKWI
                     FLDETTSHLEEQEAIRLLRLVREKLPTSGVIMVTHQPGVWNLADDICDISAVL"
     gene            9819..12191
                     /locus_tag="JN078_002627"
     CDS             9819..12191
                     /locus_tag="JN078_002627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HAY9041783.1"
                     /translation="MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVN
                     GNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPY
                     QNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG
                     RFNGGVIDAKIKRFNADDSKVKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYFSPD
                     FKKNFYTLSFNQELADNFGVTAGLSRRQSDITRADYVSNDGIVVGRAQYKNVIDTALS
                     KFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGLAWDMDTQLAWAKLR
                     TTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQ
                     KFAVGDVSHQPYSGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDN
                     YTLYMADHISWRNVSLMPGVRYDYDNYLSNHNISPRFMTEWDIFADQTSMITAGYNRY
                     YGGNILDMGLRDIRNSWTESVSGNKTLTRYQNLKTPYNDELAMGLQQKIGKNVIARAN
                     YVYREAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHIRQVDINPQ
                     IVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFT
                     HQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDYKQYVDEKLDSSLTWDTRLSW
                     TPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF"
     gene            12236..15031
                     /locus_tag="JN078_002628"
     CDS             12236..15031
                     /locus_tag="JN078_002628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HAY9041784.1"
                     /translation="MEIIMRNLCFLLTLVATLLLPGRLIAAALPQDEKLITGQLDNGL
                     RYMIYPHAQPKDQVNLWLQIHTGSLQEEDNERGVAHFVEHMMFNGTKTWPGNKVIETF
                     ESMGLRFGRDVNAYTSYDETVYQVSLPTTQKQNLQQVMAIFSEWSNAATFEKLEVDAE
                     RGVITEEWRAHQDAKWRTSQARRPFLLANTRNLDREPIGLMDTVATVTPAQLRQFYQR
                     WYQPNNMTFIVVGDIDSKKALALIKDNLSKLPANKAAENRVWPTKAENHLRFNIINDK
                     ENRVNGIALYYRLPMVQVNDEQSFIEQAEWSMLVQLFNQRLQERIQSGELKTISGGTA
                     RSVKIAPDYQSLFFRVNARDDNMQDAANALMAELATIDQHGFSAEELDDVKSTRLTWL
                     KNAVDQQAERDLRMLTSRLASSSLNNTPFLSPEETYQLSKRLWQQITVQSLAEKWQQL
                     RKNQDAFWEQMVNNELAAKKALSPAAILALEKEYANKKLAAYIFPGRNLSLTVDADPQ
                     AEISSKETLAENLTSLTLSNGARVILAKSAGEEQKLQITAVSNKGDLSFPAQQKSLIA
                     LANKAVSGSGVGELSSSSLKRWSAENSVTMSSKVSGMNTLLSVSARTNNPEPGFQLIN
                     QRITHSTINDNIWASLQNAQIQALKTLDQRPAEKFAQQMYETRYADDRTKLLQENQIV
                     QFTAADALAADRQLFSSPADITFVIVGNVSEDKLVALITRYLGSIKHSDSPLAAGKPL
                     TRATDNASVTVKEQNEPVAQVSQWKRYDSRTPVNLATRMALDAFNVALAKDLRVNIRE
                     QASGAYSVSSRLSVDPQAKDISHLLAFTCQPERHDELLTLANEVMVKRLAKGISEQEL
                     NEYQQNVQRSLDIQQRSVQQLANTIVNSLIQYDDPAAWTEQEQLLKQMTVENVNTAVK
                     QYLSHPVNTYTGVLLPK"
     gene            15393..>15634
                     /locus_tag="JN078_002629"
     CDS             15393..>15634
                     /locus_tag="JN078_002629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HAY9041785.1"
                     /translation="MDKKQVTDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQ
                     IINDELYLDGNARQNLATFCQTWDDENVHKLMDLSI"
BASE COUNT         4555 a         3399 c         3423 g         4257 t
ORIGIN      
        1 tggtgacggc agttgaaacc aatgtgttga ggttgcatgg acggttaagc cgagaatacg
       61 gtagtaagtg agatatgggg tttggtcgtt gttaatgagc aaccatgacc gccaacgact
      121 ggattctccc ttggtttatg ttggcgcgca taatgtatat tatgttaaat catatctgag
      181 tgatgcgaag tgcttttctg gtagtcgtta ttcgttcagg gttccagaac ttaagcctct
      241 cctctttcat aattggcctg tgcatgacgg atataggctg gctggtatgc agatttgccg
      301 tttgccgcat cttcccagcg ttgaagactc aagctggcaa accgcgtgca aatgagcacg
      361 ccctctttcc atcaacactt caggcagctt gcgggaatga gtccactacg gtatcagaaa
      421 tgggaagtgg gtgtctctct gatgcgtaat ggaaaaatac tggctacggg agaaaatgtc
      481 tccctgggga cagtaaataa aagcaaagta tctctgggtt taagcgcaac ctatggacaa
      541 acaggaaaca aggttgcagc cggaaccgtc cagtcagtca ttggtgtcac ttttatctat
      601 gaataattgt gattttgatc ttagtctatg cgctccattc acgaaaattg cgcggataat
      661 tattttgtga aggctattat cctacacctg taagaaaatc cgcgcacaat tgaagccaga
      721 gtcttatttt ttatattgaa aaatatgtta atttaaacac tatgagagat gatgcttaac
      781 ttatcgtatt taatctattg tttaacgata atagattaaa aatagaaaga gagtagtccc
      841 ctactcttat atatccatgt tggcgataat ccctttgtat gtactgtgca tcatcgctat
      901 tacaaatcct aataattcat ttccacacag gataagtaga tgaagaaaaa aattgaatcc
      961 taccagggtg ctgcaggtgg ttggggtgct gttaaatccg tagcgaatgc agtacgtaag
     1021 cagatggata tacgccagga tgttattgcc atgtttgaca tgaataagcc agagggcttt
     1081 gactgtccgg gttgtgcatg gccagatcct aagcacactg cgtcattcga catttgtgaa
     1141 aacggcgcaa aagcaatcgc ctgggaagtc acggataagc aggtaaatgc ctctttcttt
     1201 gctgagaata cggttcaatc attacttacc tggggagatc acgagcttga ggctgcggga
     1261 cgtctcactc agcctttgaa atatgatgcc gtcagcgact gttacaagcc attaagctgg
     1321 caacaagctt tcgacgaaat tggcgcacgc cttcaaagct atagtgatcc caatcaggtt
     1381 gaattctata cttcgggccg cacttccaat gaagctgcct ttctttatca gctttttgcc
     1441 cgtgaatacg ggagcaataa ctttcccgac tgctccaaca tgtgccatga accgaccagt
     1501 gtgggtttgg cagcgagtat cggcgtgggt aaagggactg tgttgctgga agactttgag
     1561 aagtgcgatt tagtcatttg cattgggcat aaccctggta caaaccaccc ccgcatgctg
     1621 acttcgttgc gcgctttagt gaaacgggga gcgaaaatga tcgccatcaa tcctttacag
     1681 gaacgtggcc tggagcgatt taccgcaccg caaaacccgt ttgaaatgct gacgaactct
     1741 gagactcagt tggccagtgc gtactacaac gtgcgcattg gtggcgatat ggcgttgctc
     1801 aaggggatga tgcgcctgtt aattgagcgc gatgatgctg caagtgccgc aggtcggccc
     1861 tcattgcttg atgacgaatt tattcaaacg cataccgtcg gctttgacga gctacgccgt
     1921 gacgttctca attccgagtg gaaagatatc gaacatattt ctggactaag tcagacacaa
     1981 atcgccgaac tggctgacgc atatgccgct gccgatcgca ccattatctg ttacggaatg
     2041 gggatcactc agcacgaaca tggtacccag aatgtacagc aactggtcaa tctgctgttg
     2101 atgaaaggta acattggcaa gcctggtgcg ggtatctgcc cactacgagg tcactctaat
     2161 gtacagggcg accgaaccgt cggtatcacc gagaaaccgt ctgcagagtt tctggctcgc
     2221 ctgggtgagc gctatggctt caccccacct catgcacctg gacatgctgc aattgccagc
     2281 atgcaagcaa tatgcacggg gcaggctcga gcattgatct gcatgggggg caactttgca
     2341 ctggcaatgc cagatcggga agcgagcgct gtaccgttaa cgcaattaga tttggcggta
     2401 cacgtagcca ctaagcttaa ccgctctcat ctgctgaccg cacggcatag ctatattctg
     2461 ccggttctgg ggcgtagcga gattgacatg caaaaaagcg gtgcgcaggc ggtaaccgtt
     2521 gaggattcaa tgtcgatgat tcatgcctcg cgtggcgtgt taaaacccgc cggtgtaatg
     2581 ctgaaatcag agtgtgcagt ggtcgcggga atcgcgcagg cagcactacc ccagagcgtg
     2641 gtagcctggg agtatctggt ggaagattat gatcgcattc gcaatgacat tgaagctgtg
     2701 ttaccagagt tcgccgacta taaccagcgc atccgacatc ctggaggttt tcacctgata
     2761 aatgcagctg ctgaaaggcg ctggatgacg ccgtcaggta aggctaattt cattaccagc
     2821 aaagggctgt tagaagatcc ctcttcagcg tttaacagta agctggtcat ggcgacagta
     2881 cgcagccacg atcagtacaa cacgacgatt tatggtatgg atgatcgcta tcgaggggta
     2941 ttcggtcaac gagatgtggt ctttatgagt gctaaacaag ctaaaatttg ccgtgtaaaa
     3001 aacggcgaaa gagttaatct tattgcgctt acgccagacg gtaagcgcag ctcacgccgc
     3061 atggatagat taaaagtggt catttaccct atggctgacc gctcactggt gacctatttt
     3121 ccagaatcga atcacatgct aactcttgat aaccacgatc cattaagtgg cattcctggt
     3181 tataaaagta ttccggttga attagaacca tcaaattaat tcgcctcctc atttcttctg
     3241 ctgtcatccg cacagcagaa gaatttctca ttgactatta tcgcgcaatt tgctcacatt
     3301 gatcaaatta aaccacacac tataagatat aaacctctgc ctacagctgt aagaaactcc
     3361 gctcagtact gaagtgccag tcctatttcc tcttttctcc agcctgttat attaagcata
     3421 ctgattaaca atttttaacg ttatccgcta aataaacata tttgaaatgc atgcgaccac
     3481 agtgaaaaac aaaatcacgc aaagagacaa ctataaagaa atcatgtctg taattgtggt
     3541 tgtcttatta ctgaccctta cgttgatagc cattttttcg gcaattgatc agctgggtat
     3601 ttcagaaatg ggtcgcattg caagagatct tacacatttc attatcaata gtttgcaaga
     3661 ctgaaaataa acagcaaatt ataaatatga aatgttaaaa aagtatcgat aaaaacttta
     3721 ttgttttaag gagataaaat gtcgctcgtt tgttctgtta tatttattca tcatgccttc
     3781 aacgctaaca ttttagataa agattacgcc ttctctgacg gcgagatcct gatggtagat
     3841 aacgctgttc gtacgcattt tgaaccttat gagcggcatt ttaaagagat cggatttact
     3901 gaaaatacca ttaaaaaata tctacaatgc actaacatcc agacagtgac ggtgcctgtt
     3961 cctgcgaagt ttttacgtgc ttcaaatgta ccgactggat tgcttaatga aatgattgct
     4021 tatctcaact cggaagaacg caatcatcat aatttttcag aacttttgct tttttcttgc
     4081 ctgtctattt ttgccgcatg caaaggtttc attacactat taactaacgg tgtgctatcc
     4141 gtttccggaa aagtgagaaa tattgtcaac atgaagctgg cgcacccatg gaagctgaaa
     4201 gatatttgtg actgcctgta catcagtgaa agcctgttga agaaaaaact aaagcaagag
     4261 caaacgacat tctcacagat tctattagat gccagaatgc agcacgcaaa aaatttgata
     4321 cgcgtagaag gttcagtcaa taaaattgcc gaacaatgtg gttatgccag tacttcttat
     4381 tttatttatg cgttccgcaa acatttcggc aacagtccga agagagtttc taaggagtac
     4441 cgttgtcaaa gtcacacggg tatgaatacg ggcaacacga tgagtgcttt agctatttga
     4501 ttatttgcta acgagtagtc aaccacgcac gctacgtaag aattatatgg ggcagccatt
     4561 ccctgccccg cgttgttttt aggcgatata tttattgaaa taaataagtg acatccatca
     4621 catatttatg cacttgcata acctgttgca tgattattta tgttctcaat tcagcatttt
     4681 gtcagtaaaa tgcaataatt tattaaatat caataaatta gttgtttatc ggcgagaaat
     4741 tacttaatag aacagaaagt aatgtcaacg ctttatggac tgttatttcc ctttttttag
     4801 ctaaatctgc tatctcttta tgtgactaac ttcacttaca tccacttatt tctcttcgta
     4861 aaattacttc ggaattaagt acaataagaa gaggaacatt tatgaagtct gcattaaaga
     4921 aaagtgtcgt aagtacctcg atatctttga tactggcatc tggtatggct gcatttgctg
     4981 ctcatgcggc agatgatgta aagctgaaag caaccaaaac aaacgttgct ttctcagact
     5041 ttacgccgac tgaatacagt accaaaggaa agccaaatat tatcgtacta accatggatg
     5101 atcttggtta tggacaactt ccttttgata agggatcttt tgacccaaaa acaatggaaa
     5161 atcgtgaagt tgtcgatacc tacaaaatag ggatagataa agccattgaa gctgcacaaa
     5221 aatcaacgcc gacgctcctt tcattaatgg atgaaggcgt acgttttact aacggctatg
     5281 tggcacacgg tgtttccggc ccctcccgtg ccgcaataat gaccggtcga gctcccgccc
     5341 gctttggtgt ctattccaat accgatgctc aggatggtat tccgctaaca gaaactttct
     5401 tgcctgaatt attccagaat catggttatt acactgcagc agtaggtaaa tggcacttgt
     5461 caaaaatcag taatgtgccg gtaccggaag ataaacaaac gcgtgactat catgacaact
     5521 tcaccacatt ttctgcggaa gaatggcaac ctcaaaaccg tggctttgat tactttatgg
     5581 gattccacgc tgcaggaacg gcatattaca actccccttc actgttcaaa aatcgtgaac
     5641 gtgtccccgc aaaaggttat atcagcgatc agttaaccga tgaggcaatt ggcgttgttg
     5701 atcgtgccaa aacacttgac cagcctttta tgctttacct ggcttataat gctccgcacc
     5761 tgccaaatga taatcctgca ccggatcaat atcagaagca atttaatacc ggtagtcaaa
     5821 cagcagataa ctactacgct tccgtttatt ctgttgatca gggtgtaaaa cgcattctcg
     5881 aacaactgaa gaaaaacgga cagtatgata atactattat tctctttacc tccgataatg
     5941 gtgcggttat cgatggtcct ctgccgctga acggggcgca aaaaggctat aagagtcaga
     6001 cctatcctgg cggtactcac accccaatgt ttatgtggtg gaaaggaaaa cttcaacccg
     6061 gtaattatga caagctgatt tccgcaatgg atttctaccc gacagctctt gatgcagccg
     6121 atatcagcat tccaaaagac cttaagctgg atggcgtttc cttgctgccc tggttgcaag
     6181 ataagaaaca aggcgagcca cataaaaatc tgacctggat aacctcttat tctcactggt
     6241 ttgacgagga aaatattcca ttctgggata attaccacaa atttgttcgc catcagtcag
     6301 acgattaccc gcataacccc aacactgagg acttaagcca attctcttat acggtgagaa
     6361 ataacgatta ttcgcttgtc tatacagtag aaaacaatca gttaggtctc tacaatctga
     6421 cggatctaca gcaaaaagat aaccttgccg ccgccaatcc gcaggtcgtt aaagagatgc
     6481 aaggcgtggt aagagagttt atcgacagca gccagccacc gcttagcgag gtaaatcagg
     6541 agaagtttaa caatatcaag aaagcactaa gcgaagcgaa ataactaaac cttcatgcgg
     6601 cggaattttc cgccgcctta ttgagcgaga tagcgatgca cgttacagcc aagccctcca
     6661 gttttcaatg taatctcaaa tgtgattact gtttttacct tgaaaaagag tcgcagttta
     6721 ctcatgaaaa atggatggat gacagcactc tgaaagagtt catcaaacaa tatatcgcag
     6781 cgtctggcaa tcaggtctat tttacctggc aaggcggtga acccactctg gctggcctgg
     6841 attttttccg taaagttatt cactatcaac aacgctatgc aggccaaaaa cgtattttta
     6901 atgcattaca aacgaatggc attttattga ataatgaatg gtgttccttt ctcaaagaac
     6961 atgaatttct ggttggtatc tcgaacgatg gcccccagga gttacatgac cgttacagac
     7021 gcagtaattc aggtaacggt acttttgcaa aagtgatagc agccatcgag cgtctgaaat
     7081 catatcaagt tgagtttaat acgttaaccg tcattaataa cgttaatgtc cattaccctc
     7141 ttgaggttta tcatttttta aaatctatcg gcagtaaaca tatgcaattt atcgaattgc
     7201 tcgaaaccgg gacgccgaat attgatttca gtggtcatag tgagaacaca ttccgtatca
     7261 ttgatttttc tgtgcctccc acggcttatg gcaagtttat gtcaaccatt tttatgcaat
     7321 gggttaaaaa cgatgtgggt gaaattttca ttcgtcagtt tgaaagcttt gtcagccgtt
     7381 ttttggggaa tgggcataca agttgtattt tccaggagtc ctgcaaggat aatctggttg
     7441 ttgaaagtaa tggagacatt tacgaatgcg accattttgt ctatccacag tacaaaattg
     7501 gaaacattaa taaatctgaa ctcaaaacga tgaacagtgt acaactgaca gcgcaaaaaa
     7561 aacggatttc agcgaaatgt cagcaatgtg catataaacc tatctgcaat ggcggttgtc
     7621 ctaagcatcg tattactaaa gtaaacaatg agactgtttc ttatttttgc gaaggttata
     7681 aaatcctttt ttcaaccatg gtaccttata tgaacgccat ggttgagtta gctaagaaca
     7741 gagtaccgct ttaccacatt atggatgttg caaaacaaat ggagaataat taataacgct
     7801 ctcttttaac tccattctta gcctccttct tatgacctta acaaggcacc cgacataaat
     7861 tcctgtcggg tgtttcgtca tcatcatctt cccttgcgaa aatcctggct tacgtggtat
     7921 gcgtcagggc attagcaata cccttgatta tcaatagcat aaccataacc ataaccataa
     7981 ccactgaaaa ttaaaaattt ctatatattt catattgtta aatgatactt aaataaattt
     8041 catcagtaaa tcattgccat agataatcat tggatggcac aatcaatttt cgctaatgat
     8101 aaccattccc attacgtttt gtatgttgat agcaaagtat ctctgtctgc tgaagccctt
     8161 ttggctgcgt aagaataata aaacttcagt gttgttaatc attattatcc tcgcaatgat
     8221 ccttggcgtg gttaaaattc aggtctggtt aaacgactgg aataatgatt ttttcaatgc
     8281 gctaagccag aaagaaaccg ataagctttg gcagcttgtt ctttggttcc ctgccctgct
     8341 ggggatcttt gtattaatat ccgtaaacaa aacatggtta attaaactac tgactattcg
     8401 ctggcgcgaa tggttaacag attactacct taatcgctgg tttgcagata aaaactacta
     8461 cttcacgcag atctacggcg agcataaaaa tacagataac cctgaccaac gtatcgctga
     8521 agacattctc ttactgatca gcaaaacgct cagtctttca tttggcttca tccagtcact
     8581 tagcatgctg atcaccttta ccgttattct ttggcaaagc gcgggtacgc tctcattcac
     8641 tgttggtgga acagaatgga atatccaggg gtatatggtc tataccgtcg tgctcattgt
     8701 gatcggtgga actttattta cccataaggt tggtaagcgt attcgtccgc ttaatgtgga
     8761 aaaacaacgt agcgaagcga catttcgaac taatcttgtg cagcataata agcaggcaga
     8821 actgattgcg ctaagcaatg ctgagtctct acaacgccag gagttgcgcg acaattttca
     8881 taccattaaa gagaactggc atcgtttaat gaatcgtcag cggttgcttg attactggca
     8941 aaatatttat tcgcgctcgc ttagcgttct tccctacttt ctgttattgc cgcagtttat
     9001 tagcgggcag atcaatctgg gcggactgat gaaatcgcgc caggcattta tgctagtatc
     9061 gaacaattta agctggttta tttataaata tgacgaactt gctgaactgg ctgcggttat
     9121 cgatcgcttg tatgagttcc atcaactcac tgaacagcgc cctacgaata agcctaaaaa
     9181 ttgccaacat gcggtacaag tggctaatgc gagtattcgt acgcctgata ataagatcat
     9241 attagagaac ttgaactttc atgtttcgcc aggcaaatgg ctattactga aaggctactc
     9301 tggtgcggga aaaaccacac tgcttaaaac attatcccac tgctggccgt ggtttaaagg
     9361 tgatattttt tctcctgctg acagttggta tgtgtcacaa acaccgttaa tcaaaaccgg
     9421 cttactgaaa gagattattt gtaaagcact tcccctgccc gtagacgata aatcgttgag
     9481 cgaagtactg catcaggttg gtcttgggaa attggctgcg cgtattcatg accacgatcg
     9541 ctggggagat attctttcca gcggcgaaaa acaacgtatc gccctggcac gattaatttt
     9601 acgacgtccg aaatggatat ttcttgacga aactacctct catcttgagg aacaagaggc
     9661 tatccgctta ctgcgtttag tgcgtgaaaa actacccaca agcggcgtca ttatggttac
     9721 acatcaaccc ggtgtctgga acctggccga tgatatttgt gacattagcg cggttttata
     9781 aaaacaataa aagccctgct gtacggagat ataaataaat gaagcgagtt cttattcctg
     9841 gcgtcatttt atgtggcgct gatgtggcgc aggccgtcga tgacaaaaac atgtacatgc
     9901 atttttttga agagatgacg gtctatgctc ctgtccctgt acccgtaaac ggcaacacgc
     9961 attacaccag tgaaagcatc gagcgtttac cgaccgggaa tggcaatatc agcgatctgc
    10021 tgagaaccaa ccctgcggta cgcatggatt caacgcaaag tacctcgttg aaccagggag
    10081 atattcgccc tgagaaaatc tctattcacg gtgcgtcgcc ctaccagaat gcctatttga
    10141 ttgacggtat tagtgcaact aataacctga acccagcgaa tgagtccgat gccagtagtg
    10201 caaccaatat tagcgggatg tcacaggggt attatcttga tgtcagctta ctggacaatg
    10261 tgacgcttta tgacagtttt gtgccggttg aatttggtcg cttcaatggc ggggtaattg
    10321 atgcaaagat caaacgcttc aacgctgatg atagcaaggt gaaattgggt tatcgcacta
    10381 cgcgttcgga ctggttaaca tcgcatatcg atgagaataa caagagcgca tttaatcaag
    10441 gttcttcagg aagtacttat ttctctccag attttaaaaa gaacttttat accttgtcgt
    10501 ttaatcagga gctggctgat aactttggcg ttaccgccgg tttatcgcgc cgccagtctg
    10561 atatcacccg cgcggattat gtttcgaatg acggcattgt cgtcggtcgg gcacagtata
    10621 aaaacgttat cgatactgca ttgagcaaat ttacctggtt tgccagcgac cgctttaccc
    10681 acgatttaac cttaaaatat accggctcca gccgtgatta taataccagc accttcccgc
    10741 agtctgatcg cgaaatgggt aataaatcct atggtcttgc atgggatatg gatacgcaac
    10801 tcgcatgggc caaactacgt accaccgttg gttgggatca tattagtgat tatacccgtc
    10861 acgatcatga catctggtac accgaacttt catgtacata tggtgatatt acagggcgtt
    10921 gtacccgtgg cggattagga cacatttccc aggctgtaga taattacacc ttcaaaacac
    10981 gcctggactg gcaaaaattc gccgtgggtg atgtttcgca tcaaccctac tccggcgcgg
    11041 aatacatcta ttccgatgca tggactgaac gccataacca gtctgaatcc tatgtgatta
    11101 atgctgcagg aaagaaaact aaccatacca tttaccataa aggtaaaggc agcctaggaa
    11161 ttgacaacta cacgctgtat atggcggatc acattagctg gcggaatgtg tcgttaatgc
    11221 ccggtgtgcg ttatgactat gacaactatc tgtcaaacca caatatctcc ccgcgcttta
    11281 tgacggaatg ggatattttt gctgatcaaa cctcaatgat taccgccggt tataaccgtt
    11341 actatggcgg gaatattctt gatatgggat tacgtgatat ccgcaatagc tggacggaat
    11401 cggtatcagg taataaaacc ctgacgcgtt atcagaattt gaaaacgcct tataacgatg
    11461 aactggcaat gggattgcag caaaaaatcg gtaagaacgt tattgcacgc gcaaactatg
    11521 tttaccgtga agcgcatgat caaatcagca aaagcagtcg taccgacagc gcgactaaaa
    11581 ccaccattac tgaatataac aacgatggca aaaccaaaac gcattcgttt aacctcagtt
    11641 ttgaactggc cgaacccctg catatccgcc aggtagatat taacccgcaa attgtcttta
    11701 gctatatcaa gagcaagggc aacttgtcgt taaacaatgg ttatgaggag agcaataccg
    11761 gtgataacca ggtggtttat aacggtaatc tggtctctta cgatagcgtt ccagtggcag
    11821 attttaataa cccattaaag atctccttaa acatggattt cacgcatcaa ccgagcgggt
    11881 tagtgtgggc gaatacgctg gcgtggcaag aagcgcgtaa agctcgcatt atccttggta
    11941 agacaaatgc gcaatacatc agcgaatatt cagattacaa gcagtatgtt gacgaaaaac
    12001 tggatagcag cctgacctgg gacacccgct tgtcctggac gccacaattt ctgaaacaac
    12061 aaaacctgac gatcagtgcc gatattctca atgtactgga tagcaaaacc gctgttgata
    12121 caacgaatac cggtgtggcg acctacgcca gtggccgtac tttctggctt gatgtcagca
    12181 tgaaatttta atagttcgga ttttacttaa ccgggtaaat tcgcccggtt ttcgcatgga
    12241 gataattatg agaaacctct gtttcttact gacgttagtg gcaactctgt tgctccccgg
    12301 gcggctgatt gccgccgcct taccgcagga tgaaaagtta attaccgggc aactggacaa
    12361 tggcttgcga tatatgattt atccgcatgc tcaaccaaag gatcaggtaa atttatggct
    12421 gcaaattcat accggttcat tgcaggaaga agacaatgag cgcggcgtgg ctcattttgt
    12481 agaacatatg atgtttaacg gcacaaaaac atggccgggt aataaagtca tcgaaacatt
    12541 tgagtcaatg ggcctgcgtt ttggtcgcga tgttaatgcc tataccagct atgacgaaac
    12601 ggtgtatcag gtgagtttgc cgactacgca gaaacaaaat ctgcaacaag tgatggcaat
    12661 cttcagtgaa tggagtaatg ccgcaacctt tgaaaaactc gaagtagacg ctgaacgtgg
    12721 cgtaattact gaggaatggc gtgcccatca ggatgcgaaa tggcgcacct ctcaggcgcg
    12781 ccgccctttc ctgctggcta atacccgtaa tttagaccgt gaacctatcg gcctgatgga
    12841 tactgtcgcc acggtcacac cggcacaatt gcgccaattt tatcaacgct ggtatcaacc
    12901 aaataatatg acctttatcg tggtcggcga tatcgacagt aaaaaagcgc tggcgctgat
    12961 aaaggataat ttaagtaagc ttccggctaa caaagcagct gaaaatcgcg tctggccgac
    13021 aaaagccgaa aaccacctgc gctttaatat cattaatgat aaagaaaacc gggtgaacgg
    13081 catcgcactc tattatcgcc tgccaatggt acaagtgaac gatgagcaaa gctttatcga
    13141 acaagctgaa tggagcatgt tagttcagct gttcaatcaa cgtctgcagg aacgcataca
    13201 gtcgggcgag ttgaagacta tttctggcgg cactgcgcgc agcgttaaaa ttgcacccga
    13261 ttatcagtcg ctgtttttcc gtgtaaatgc acgagacgat aatatgcagg atgctgcgaa
    13321 tgcattaatg gcagagttgg caaccattga tcagcatggt ttttctgctg aagaactcga
    13381 tgatgtcaaa tctacccgcc tcacctggct gaaaaatgcg gttgatcagc aagctgaacg
    13441 tgatttacgt atgctgacca gtcgcctggc atccagctca ttaaataata cgccgttctt
    13501 gtcgccggaa gagacatatc aactttcgaa acgtctgtgg cagcaaatta ccgtgcaaag
    13561 tctggcggaa aaatggcagc agttaagaaa gaaccaggac gcattttggg agcaaatggt
    13621 aaacaatgag cttgccgcca aaaaagcatt gtctcctgcg gctatcctgg cgctggaaaa
    13681 agagtacgcc aacaaaaagc tggcggctta catcttccca ggcagaaatt tatcgttaac
    13741 agtagacgct gacccacagg cggaaattag cagcaaagaa acgctggctg agaatctgac
    13801 atcattaaca ctttccaatg gtgccagggt tattctggca aaatccgcgg gtgaagagca
    13861 aaagctacaa attactgccg tatcgaataa aggcgattta agtttccctg cgcagcaaaa
    13921 atcacttatc gcgctggcaa ataaagcagt aagcggaagc ggcgttggtg agctctcctc
    13981 ttccagcctg aaacgctgga gtgcggaaaa ttcggtaacc atgagcagta aagtcagtgg
    14041 catgaatacg ttgctctccg ttagcgcgcg gactaataac cctgaacctg gttttcagtt
    14101 gattaaccag cgaatcaccc acagcacgat taacgacaat atttgggcat cgctacaaaa
    14161 tgctcaaatt caggcgttga aaacgctcga ccagcgtcca gcggagaaat tcgcccagca
    14221 gatgtatgag acgcgctatg ctgatgaccg cacgaaatta ctgcaagaaa atcagattgt
    14281 acagtttact gccgcagatg cgctggctgc cgatcgccag ttgttttcat ctccagcgga
    14341 tatcacgttt gtcattgtcg gtaatgtctc agaagacaaa ctcgtggcgt taattacgcg
    14401 ttacttagga tcaatcaaac actctgattc gccattagcc gcaggtaaac cattaactcg
    14461 cgcgacggac aacgcatcgg ttactgtaaa agaacaaaat gaacctgtgg cacaggtttc
    14521 acagtggaag cgttatgatt cccggacacc tgttaatctg gcgacgcgta tggcgctcga
    14581 tgcttttaac gtcgcactgg caaaagatct acgtgttaat attcgtgaac aggcatctgg
    14641 agcatacagc gtttcttctc gcctctcggt tgatcctcag gccaaagata tcagtcattt
    14701 gctggctttt acttgtcaac cagaacgaca tgatgaactg ttaacgttag cgaatgaagt
    14761 gatggttaag cgtctggcta aagggatcag tgagcaagaa ctgaatgaat accagcaaaa
    14821 cgttcagcgc agcctcgata tccaacagcg tagcgttcaa caattagcga acactattgt
    14881 aaatagtctt attcaatatg acgatcctgc agcatggact gagcaggagc aattgttgaa
    14941 acaaatgacg gtagagaatg ttaacactgc cgttaaacaa tatctttctc atccggtaaa
    15001 tacttatacc ggagtattat tgccaaaata ataacagccc cgtcaacaca tcgttggcgg
    15061 ggattttagc aatattcgct atttttatgt aataatttta taaatgcgtt caaaataata
    15121 atcaagtact aatagtgata ttttaaggtc tgatttttac gtgataattc aggagacaca
    15181 gaatgcgcat aaaaataaca gcataaaaca ccttaccacc acccaagaat ttcatattgt
    15241 attgtttttc aatgaaaaaa cattattcgc gtaatatctc acgataaata acattaggat
    15301 tttgttattt aaacacgagt cctttgcact tgcttacttt atcgataaat cctacttttt
    15361 taatgcgatc caatcatttt aaggagttta aaatggataa gaagcaagta acggatttaa
    15421 ggtcggaact actcgattca cgttttggtg cgaagtctat ttccactatc gcagaatcaa
    15481 aacgttttcc gctgcacgaa atgcgcgacg atgtcgcatt ccagattatc aatgacgaat
    15541 tatatcttga tggcaacgct cgtcagaacc tggccacttt ctgccagacc tgggacgacg
    15601 aaaatgtcca caaattgatg gatttatcca ttaa
//
LOCUS       DADMJB010000097        15313 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.097, whole genome shotgun sequence.
ACCESSION   DADMJB010000097 DADMJB010000000
VERSION     DADMJB010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15313
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.097"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(21..464)
                     /locus_tag="JN078_002630"
     CDS             complement(21..464)
                     /locus_tag="JN078_002630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000829114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HAY9041786.1"
                     /translation="MAELQKVDDWLSALLANLEPAARSRMMRQLAQELRRTQQQNIRM
                     QRNPDGSSYEPRRVTARSKKGCIKRQMFTKLRTTKYLKTAASADSASVQFEGRVQRIA
                     RIHHYGLSDRVSRKGIYTIYAKRQLLGFNVQSIELIERMFIKNLT"
     gene            complement(457..888)
                     /locus_tag="JN078_002631"
     CDS             complement(457..888)
                     /locus_tag="JN078_002631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9041787.1"
                     /translation="MNKPQSLRHALNKAVPYVRNNPDKLHLFVDNGSLVASGASSMSW
                     EYRYTLNVVIEDFSGDQNLLMAPVLLWLRDNQPDAINNPALREKLFTFEVDILRNDVC
                     DISLNLQLTERVLVSTDGSVSNVEAVAEPDEPEEMWTVKRG"
     gene            complement(984..1412)
                     /locus_tag="JN078_002632"
     CDS             complement(984..1412)
                     /locus_tag="JN078_002632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysB family phage lysis regulatory protein"
                     /protein_id="HAY9041788.1"
                     /translation="MNRLLLVVLALLLAALGWQTWRLADASQTISTQADELQSKSQAL
                     AKSNSQLISLSILTETNNREQARLYAEAEQTSVLLRQRQRRIEELKRENEDLRRWADT
                     PLPADIIRLRERPALTGGAAYRQWLSASDAVSAGAGSAAH"
     gene            complement(1409..1786)
                     /locus_tag="JN078_002633"
     CDS             complement(1409..1786)
                     /locus_tag="JN078_002633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000730949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041789.1"
                     /translation="MKKKLISGLFLMLWMALLIAAMVYPQGIFPVLAASGVWVACLLT
                     WAVIPVALASLIKNGPLWQELRASLLKTITRKENVFISWVIRLLIVVSLAWTGWAITL
                     VFYLLTVIAFWITHNQMAQQVAA"
     gene            complement(1788..2300)
                     /locus_tag="JN078_002634"
     CDS             complement(1788..2300)
                     /locus_tag="JN078_002634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001069913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HAY9041790.1"
                     /translation="MNPSIVKRCLVGAVLAIAATLPGFQQLHTSVEGLKLIADYEGCR
                     LQPYQCSAGVWTDGIGNTSGVIPGKTITERQAAEGLISNVLRVERALEKCVKQQPPQK
                     VYDAAVSFAFNVGTGNACSSTLVKLLNQRRWADACRQLPRWVYVKGVFNQGLDNRRAR
                     EMAWCLQGAN"
     gene            complement(2281..2496)
                     /locus_tag="JN078_002635"
     CDS             complement(2281..2496)
                     /locus_tag="JN078_002635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041791.1"
                     /translation="MTLERISAFITYCIAVVLAWLGDLSIKDASTLGGLMIGVLMLAI
                     NWYYKHKAYQLLRDGQISREDYESINR"
     gene            complement(2500..2703)
                     /locus_tag="JN078_002636"
     CDS             complement(2500..2703)
                     /locus_tag="JN078_002636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9041792.1"
                     /translation="MKVRAHQYDTVDALCWRHYGRTQGVTEQVLKANPGLAEYGPFLP
                     HGLQVELPDIPTTTTVQTVQLWD"
     gene            complement(2703..3167)
                     /locus_tag="JN078_002637"
     CDS             complement(2703..3167)
                     /locus_tag="JN078_002637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head completion/stabilization protein"
                     /protein_id="HAY9041793.1"
                     /translation="MKFVAPEQAPEQAEIIRNTPFWPDVDLSEFRSVMRTDGTVTQPR
                     LKQVALSAISEVNAELYEFRRRQQMLGYASLAEVPAEQLDGKSERIQHYFNAVYCWAR
                     AMLNERFQDYDATASGAKRGEELAEASGDLWRDARWAISRVQDAPHCTVELI"
     gene            complement(3263..3913)
                     /locus_tag="JN078_002638"
     CDS             complement(3263..3913)
                     /locus_tag="JN078_002638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase endonuclease subunit"
                     /protein_id="HAY9041794.1"
                     /translation="MSLSPARQHRLRVQAEQAVREGGSVRHASGYDLMLLQLAEDRRR
                     LKGVQSTVKKAEIKVELLPKYAAWAEGVLAAGGAQQDDVLMYVMLWRIDAGDYAGALE
                     IGRHALRHGWVMPLGNRNVQTVLTEEMADAAQSAMLAATGFDADLLLQTLELTDGLDM
                     PDQSRARLHKAIGAVLSESNPASALNHLNHALQLDPRCGVKKDKQQLERRLRNDSR"
     gene            complement(3917..4975)
                     /locus_tag="JN078_002639"
     CDS             complement(3917..4975)
                     /locus_tag="JN078_002639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein, P2 family"
                     /protein_id="HAY9041795.1"
                     /translation="MKKNTRFAFNAYLQQLARLNGVAVEELSSKFTVEPSVQQTLEDQ
                     IQQSAAFLTLINVTPVTEQSGQLLGLGVGSTIAGTTDTTAKEREPVDPTLMVDVEYKC
                     EQTNFDTVLTYAKLDLWAKFQDFQVRIRDAIVKRQALDRIMIGFNGVKRAKTSNRSEN
                     PLLQDVNKGWLQKIREDAPDHVMGSTTTGGETTPGAVKVGKGGEYANLDAVVMDAVNE
                     LIDVVYQDDDDLVVICGRELLSDKYFPLVNKEQENSEKLAADMIISQKRMGGLQAVRA
                     PFFPPNALLITRLDNLSIYWQEDTRRRSVIDNPKRDRIENFESVNEAYVVEDYRCAAL
                     VENIQISDFSAAAAETGA"
     gene            complement(4992..5825)
                     /locus_tag="JN078_002640"
     CDS             complement(4992..5825)
                     /locus_tag="JN078_002640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPO family capsid scaffolding protein"
                     /protein_id="HAY9041796.1"
                     /translation="MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALIN
                     LEHIKSYLPDSTFNRYGKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKL
                     FTFMEVSPKFADTGKAYLVGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFT
                     AAEETVIELEEVQDDKPSLFARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSAR
                     TEKSLSEQEERLSELETALQAQQTAFNELVDKLSHEDSRQDYRQRATGGNAPADTLTN
                     C"
     gene            5968..7734
                     /locus_tag="JN078_002641"
     CDS             5968..7734
                     /locus_tag="JN078_002641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase ATPase subunit family protein"
                     /protein_id="HAY9041797.1"
                     /translation="MNTTLTPADLDPRRQAMLLYFQGYRVARIAEMLGEKVATVHSWK
                     KRDKWGDYGPLDQMQLTTAARYCQLIMKEHKEGKDFKEIDLLARQSERHARIGKFNNG
                     GNEADLNPNVANRNKGPRRQPEKNVFTDDQIEKLEKIFHSSMFNYQRHWWEAGKTNRI
                     RNLLKSRQIGATFYFAREALIDALLTGRNQIFLSASKAQAHVFKQYIIDFAKEVEVEL
                     KGDPMVLPNGATLYFLGTNARTAQSYHGNLYLDEYFWIPKFQELRKVASGMAIHKKWR
                     QTYFSTPSSLTHSAYPFWSGALFNRGRNKADKVDIDLSHSNLAPGRLCADGQYRQIVT
                     VEDAVRGACNLFDLDQLRMEYSPDEYQNLLMCEFVDDLASVFPLSELQACMVDSWEVW
                     TDFHALALRPFGWREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGM
                     DFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYENVKAFFPAVREFVYNPNVKNALVL
                     KAYDIISHRRLEFDAGHTDIAQSFMAIRRATTASGNRPTYEASRSEEASHADLAWATM
                     HALFNEPLQGESANTSNIVEIF"
     gene            7734..8765
                     /locus_tag="JN078_002642"
                     /pseudo
     CDS             7734..8765
                     /locus_tag="JN078_002642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000520363.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
     gene            complement(8872..9753)
                     /locus_tag="JN078_002643"
     CDS             complement(8872..9753)
                     /locus_tag="JN078_002643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004982020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041798.1"
                     /translation="MKWAIEMNKLKRPVFKDYSAFKKLSANKRLKHHSVLNGQDTFIL
                     NAYRSYIKNKGYLNVNSCGVLSNNIAEALRYYYNNPAKCLSIIDDIRAANSNSLCPMC
                     GSMHSGTLDHVLPKENYPEFSLFTKNLVPACKCNTFKSTTIANSAGHRMLHPYFDNIL
                     KQRLICANFSKLGRTPTIDVKIIIDPMSPEYNNVKYHLDNVVIKNNIKGYLSEQWESF
                     YLYPELVIRGLNKSLSTYSDVYELLTRELLLLDEKHKGKNNWNSVFVAGLIRPDVIRW
                     ILCELHLGNRSPDGRLI"
     gene            complement(9737..11386)
                     /locus_tag="JN078_002644"
     CDS             complement(9737..11386)
                     /locus_tag="JN078_002644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000960487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HAY9041799.1"
                     /translation="MLVKKNKNYSLYFLITNNQQISDSGNYIKIVPSRSDWNDFGYLS
                     RVEISIFNKKECKDIISLNGYIGFLNSEEERNGKAELIRRVKKKEESNLKDEGFNDYF
                     VMLQDMNNYRRLVRFFGVNESKYILNFINDVVSKKSDASAENLRKKAISSDIFNKSFI
                     RESESYFTFKNAGTVLSGIQYEELGNLSQHIKISYSNKVNEEDVSYVFNFDHEHDLPK
                     RISIIIGENGVGKSQTLREIALAAIKGKDNLVAVVDSNGVSIEERIQISRLIAFSPTN
                     ESKCSFPTDKRIKSLIWYKRLTLNRESKSKLNLNDLIVQLARSNDAIGYNQRWNIFVD
                     ALSVLNSNNDLVIKCGGENSPFVKLNELNSRGEESRLSLYSEIILSGEPLRLIENKCY
                     PLSSGEISFIKFCVQVCLYIENGTLLLIDEPETHLHPSFINKFMALLDNLLEKTGSSA
                     IIATHSVYLVREVFKEQVTILRRRDDGVIVSEKPRLSTFGANIGNISYFVFGESEPTQ
                     ILNKVKNNIIAKNMSWDDVESKYSEDLSLNVLTALRNEMGN"
     gene            complement(11679..11912)
                     /locus_tag="JN078_002645"
     CDS             complement(11679..11912)
                     /locus_tag="JN078_002645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinI family protein"
                     /protein_id="HAY9041800.1"
                     /translation="MRIEIMIDKEQKISQSTLDALESELYRNLRPLYPKTVIRIRKGS
                     SNGVELTGLQLDEERKQVMKIMQKVWEDDSWLH"
     gene            complement(11923..12111)
                     /locus_tag="JN078_002646"
     CDS             complement(11923..12111)
                     /locus_tag="JN078_002646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041801.1"
                     /translation="MQDYFLESLKLQRIDFFLKLVAASECSDEEKGLALQWVSELTDE
                     LMAKIRTHEYNRSMDVIS"
     gene            complement(12265..14679)
                     /locus_tag="JN078_002647"
     CDS             complement(12265..14679)
                     /locus_tag="JN078_002647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000017528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication endonuclease"
                     /protein_id="HAY9041802.1"
                     /translation="MSHADMNNCCGFNEAAAAFSWNSPKKAINPYLDPAEVAPVSALS
                     NLITLYAADNEQEQLRREALSDQVWERYFFYESRDPVQHEMEQDKLISRAKLAHEQQR
                     FNPDMVILADVNAQPSHISKPLMQRIEYFSSLGRPKAYSRYLRETIKPCLERLEHVRD
                     SQLSASFRFMASHVGLDGLLILPEMSQDQVKRLSTLVAAHMSMCLDAACGDLYATDDV
                     KPEEIRKTWEKVAAETLRLDVIPPAFEQLRRKRNRRKPVPYELIPGSLARMLCADWWY
                     RKLWKMRCEWREEQLRAVCLVSKKASPYVSYEAVMHKREQRRKSLEFFRSHELVNEEG
                     DTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAEMRGDCAVFYTITCPSRFHSTLNN
                     GRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCF
                     MRKKDRRAITALLRKFAIREDREELGNNTGPRFKSELINPRKGTPTSYIAKYISKNID
                     GRGLAGEISKETGKSLRDNAEYVNPWASLHRVQQFRFFGIPGRQAYRELRLLAGQAAR
                     QQGDKKAGAPVLDNPRLDAILAAADAGCFATYIMRQGGVLVPRKYHLIRTAYEINEEP
                     TAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQGACAPWTRGNNCL
                     LAENLNQQEKDKSADGNPRTDITSMDDKELHDYLHSMSKKERRELAARLRLVKPKRRK
                     DYKQRITDHQRLQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAGLRIFYRNQRLQEDD
                     QWRNLY"
     gene            complement(14676..>15313)
                     /locus_tag="JN078_002648"
     CDS             complement(14676..>15313)
                     /locus_tag="JN078_002648"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000104187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HAY9041803.1"
                     /translation="RVLFEIANREVAYYNIRQEFNYSTEITDFMKAVYFLYLNRHGYR
                     GLCRYNKSGHFNIPYGNYKNPYFPEKEIRAFAEKAQRATFICASFDETLAMLKAGDVV
                     YCDPPYDGTFSGYHTDGFTEDDQYHLASVLEHRSSEGHPVIVSNSDTSLIRSLYRNFT
                     HHYIKVKRSIGVAAGEGKSATEIIAVSGPRCWVGFDYSRGVDSSAVYGVRA"
BASE COUNT         3741 a         4138 c         3524 g         3910 t
ORIGIN      
        1 caattgaaaa caaataaaaa tcaagttagg tttttaatga acattctttc aattaactca
       61 atagattgga cattaaaacc taataactgc cttttcgcat agatggtata aatacctttt
      121 cgactgacgc gatcactcaa gccgtaatgg tgaatacggg caatgcgctg caccctacct
      181 tcaaactgta cgctggcaga atcggcgctg gctgcagttt tcaggtattt tgtggtgcgc
      241 agctttgtaa acatctgacg tttgatgcac ccctttttgc tgcgtgctgt taccctgcgc
      301 ggctcataac tgctgccatc aggattgcgc tgcatcctga tgttctgctg ctgtgtccgg
      361 cgcagttcct gcgccagctg gcgcatcatg cggcttcttg cggctggctc cagattcgcc
      421 aataatgcac tcagccagtc gtccaccttc tgcaattcag ccacgtttca ccgtccacat
      481 ttcttcaggt tcatcaggtt ccgctaccgc ttcaacgttc gacacactgc cgtcagtgct
      541 gaccagcaca cgctccgtca gttgcaggtt aaggctgata tcacagacat cgttgcgcag
      601 aatatccacc tcaaaggtga atagcttttc ccgtaacgcc gggttattga tcgcatcggg
      661 ctggttatcc cgcagccaca gcaaaaccgg ggccatcagc agattctggt cgccgctgaa
      721 atcttcaatc accacgttca gggtgtagcg gtactcccat gacatggagc tagccccgga
      781 ggcaaccagc gaaccgttat ccacaaacag atgcagtttg tccgggttat tacggacata
      841 aggcactgct ttattgaggg cgtggcgcag ggattgtggt ttgttcactg tttcgctcct
      901 gacacgcaat aatcatgtcc actttgtctg cacagaccgc ccaggcggcc tccgtttcat
      961 ccagcaacgc attcagatca ccgttagtgc gcggcgctgc ctgctccagc cgacacggcg
     1021 tcactcgcgg acaaccactg acggtaagct gcacctccgg tgagtgccgg acgttcccgc
     1081 agccggataa tgtcagcagg caaaggagta tcagcccagc gacgtaaatc ctcgttctca
     1141 cgtttcagtt cctcaatccg gcgttgtcgt tgtctcagca gtacactggt ctgttctgct
     1201 tcggcataga gccgcgcctg ctcccggtta ttggtttcag tcagaatgga caggctgata
     1261 agctggctgt tgctctttgc cagtgcctgg cttttgctct gcagctcgtc tgcctgcgtg
     1321 ctgatggtct ggctggcatc agccagccgc cacgtctgcc agcccagcgc cgccaataat
     1381 aacgccagca caaccagcag caaccggttc atgcggctac ctgttgcgcc atctgattat
     1441 gggtgatcca gaaggcaata acggtcagca gataaaagac cagggtaatg gcccaccccg
     1501 tccaggcgag actgacgaca atcagcaatc gtatcaccca gctgataaat acgttttctt
     1561 ttcgggtaat tgtcttcagt aaagatgccc tcaactcctg ccagagcggg ccattcttaa
     1621 ttaacgaagc cagtgctacc ggaattaccg cccatgtcag taaacaggct acccaaacgc
     1681 cggacgctgc cagtaccgga aaaatcccct gcggatacac cattgctgcg attaacagcg
     1741 ccatccataa catcagaaac agcccgctga ttaatttctt tttcatttca gtttgctccc
     1801 tgtaaacacc aggccatctc ccgcgcacgg cggttatcca gcccctgatt aaaaacacct
     1861 ttcacataaa cccagcgcgg caactgtcgg cacgcatccg cccagcgccg ctgattgagc
     1921 aatttcacca gcgtggaact gcaggcattg cccgtaccca cgttgaaggc aaacgacacc
     1981 gcagcgtcat acaccttctg cggcggctgt tgcttcacac acttttccag cgcccgctcc
     2041 acacgcagca cgttggagat cagcccttct gctgcctgtc gctccgtaat ggttttgccg
     2101 ggaatgacgc ccgacgtatt accaataccg tcggtccaga cacccgcgct gcactgatac
     2161 ggctgcagac gacaaccttc gtaatcggca atcagtttca gtccctccac ggaggtgtga
     2221 agctgctgaa aacccggcag cgtggcagca atagccagca cggccccgac aaggcagcgt
     2281 ttaacgattg atggattcat agtcctcccg cgagatctgc ccgtcgcgca gaagctggta
     2341 ggctttgtgt ttgtagtacc agttgatagc cagcatcagc acaccaatca tcaggccgcc
     2401 cagcgttgag gcatccttga tggacaaatc gcccagccag gccagcacga cggcgatgca
     2461 atacgtgata aaggcgctga ttcgctcaag cgtcataatt cagtcccata gctggacggt
     2521 ctgcacggtg gtggtggtcg gaatgtccgg cagctccacc tgcagcccgt gaggtaaaaa
     2581 ggggccgtat tcggcaagcc ccggatttgc cttcagtacc tgctccgtga caccctgcgt
     2641 gcgcccgtaa tgacgccagc aaagcgcgtc caccgtgtca tactgatgcg cacgcacttt
     2701 catcagataa gctccactgt gcagtgcggc gcgtcctgca cccggctgat ggcccagcgg
     2761 gcgtcacgcc acaaatcacc gcttgcttcc gccagttctt cgccccgctt cgcaccggat
     2821 gccgtggcgt catagtcctg gaaacgttcg ttgagcatgg cgcgagccca gcagtaaacc
     2881 gcgttgaaat agtgctgaat gcgctcactt ttcccgtcca gctgttccgc cggaacctca
     2941 gccagcgacg cataccccag catctgctgg cgtctgcgaa actcatacag ctctgcgtta
     3001 acctccgaaa ttgccgacag tgcaacctgc tttaaacgcg gctgcgtcac cgtgccgtca
     3061 gtgcgcatga cactgcgaaa ctccgacagg tccacatcag gccagaacgg cgtatttcta
     3121 atgatttccg cctgttccgg tgcctgttct ggcgcaacaa acttcatgct gctttctcct
     3181 gaaataaagg gcggtggacg gggttttgat gtggctgtgc ctttcgccac cccgtgccgc
     3241 ccgtgcgcgg gggcacgttc tgtcagcggc tgtcattgcg cagtctgcgc tccagctgct
     3301 gtttgtcttt tttcacgcca cagcggggat cgagctgtaa cgcatggttg agatgattaa
     3361 gggcggaagc cggattgctt tcactcagga ccgcgccaat cgctttatgc agacgtgccc
     3421 gtgactggtc cggcatatcc agaccgtctg tcagctccag cgtctgcagc aacagatcgg
     3481 catcaaagcc ggtggcggca agcattgcgc tctgcgctgc atctgccatt tcctctgtca
     3541 gcacggtctg cacgttgcgg ttgcccagcg gcatcaccca tccatgacgc agggcatgac
     3601 gcccgatctc cagcgccccg gcataatctc cggcatcaat gcgccacaac atcacgtaca
     3661 tcagcacgtc atcctgttga gcgcctccgg cagccaggac accctccgcc caggcggcgt
     3721 acttcggcag cagctccact ttgatttccg cttttttgac cgtggactga acgcccttga
     3781 gacggcggcg gtcttccgcc agttgcagca gcatcaggtc atagcccgat gcgtggcgaa
     3841 cactgccacc ctcacggacg gcctgttcag cctgaacgcg caggcgatgc tgccgtgcgg
     3901 gactcaggct catggattac gctccggttt cggctgcggc ggcgctgaaa tcactaatct
     3961 ggatgttttc caccagtgcg gcgcagcggt agtcctcaac cacataggct tcgttaacgg
     4021 attcaaagtt ttcaatccgg tcacgtttcg ggttgtcgat aactgaacgg cggcgggtgt
     4081 cttcctgcca gtagatggac aggttatcca gacgggtgat cagcagcgca ttcggcggga
     4141 agaacggcgc acgcacggcc tgcaggccac ccatgcgttt ctgactgatg atcatatcgg
     4201 cagccagttt ttcactgttt tcctgctctt tgttgaccag cgggaaatac ttgtcagaca
     4261 gcagttcacg accgcaaatc accaccagat cgtcatcgtc ctggtagacc acgtcgataa
     4321 gctcattgac ggcatccatc accacggcgt ccaggttggc atattcgcca cctttcccga
     4381 ctttcactgc gcccggtgtg gtttcaccgc ccgtggtggt gctgcccatg acgtgatccg
     4441 gtgcatcctc acggattttc tgcagccagc ctttattcac atcctgcagc agcgggtttt
     4501 cgctacggtt ggaggttttc gcacgcttca cgccattaaa gccgatcatg atgcggtcca
     4561 gtgcctgacg tttcacgatg gcgtcacgga tacgcacctg aaaatcctga aacttcgccc
     4621 acaggtccag cttcgcgtag gtcagcaccg tgtcaaagtt ggtctgctcg catttatatt
     4681 ccacatcgac catcagcgtc ggatcgacag gttcacgctc tttcgcagtg gtatcagtgg
     4741 ttccggcaat ggtgctgcca actcccaacc ccagcagctg accggactgc tcagtcactg
     4801 gcgtgacgtt aatcagagtc aggaaagcgg cggactgctg gatctggtct tccagcgtct
     4861 gctgcacgga cggctctacg gtgaacttgc tggacagttc ttcaactgcc acaccgttca
     4921 gacgcgccag ttgctgcagg taagcgttaa aagcaaagcg ggtattcttc ttcatcaggt
     4981 tttgtgctcc atcagcaatt ggtcagagtg tcagcggggg cgttaccgcc tgttgcacgc
     5041 tggcggtagt cctggcggct gtcttcatga ctcagcttgt ccaccagttc gttaaaggcg
     5101 gtttgctgtg cctgcagggc agtctccagc tcagacaggc gttcttcctg ctcagacagg
     5161 gatttttcgg tgcgtgcgct caggttctgc tgctcagtgg cgaccagctc cacggcctta
     5221 tgcacatcag agaaccgggc gtcatcggac tgctcttttt tggtaaacag cgccgtgacg
     5281 cgggcaaaca gggacggttt gtcgtcctgg acttcttcca gttcgatcac cgtttcctct
     5341 gcggcggtaa agagattggc gggattctgc ttgcggtttg ccagcgggtt atgggctgca
     5401 ctggcgctga atgtcagcat ttcagtgccc agactggcag ggtcatcagt ggcagccagg
     5461 ccgactaggt aggctttgcc cgtatcagcg aacttcgggc tgacttccat aaaggtgaat
     5521 aatttctggc cttttttcac cagttccacc agggactccg ttggctcaac gtcagcatac
     5581 agcgccatct tgcctgccag cggaccttcc gtgatttctt cagcaaacag cgccgtcacc
     5641 ttgccgtagc ggttaaaggt gctgtccggc agataagact tgatgtgctc aaggttaatc
     5701 agcgcggtat acaccgccgg gttatagctg gctgccatct gttccagcca ttcacgctgg
     5761 atttcgcgtc cgtcggtggt ggcaccttcc accccgatgc gaaaacgctt tgctttcact
     5821 gtcatgagcc gtgctccgtt agaaaaaact tactggagcc ttatggttgc ggtgataggg
     5881 gcagtgaaac aatgcgcggt atttgtaccg acaaccacac aaaccgcagg cggggaaagc
     5941 cttcattcaa ggctgtaggt ttgtgccatg aacaccacac tgacacccgc agatctcgat
     6001 ccccgtcggc aggccatgct gctgtacttt cagggatacc gcgtagcccg cattgctgaa
     6061 atgctgggcg agaaagttgc aaccgttcac agctggaaaa aacgcgacaa gtggggtgac
     6121 tatgggcctc tggatcagat gcagctcacc accgccgcac gctactgcca gctcatcatg
     6181 aaggagcaca aagaagggaa agatttcaaa gagattgacc tgctggcgcg ccagtctgag
     6241 cgccacgcgc ggatcggcaa gtttaacaat ggcggcaacg aagccgactt aaaccctaac
     6301 gtcgccaacc gcaacaaagg cccacgccgt cagcctgaaa agaatgtttt caccgatgac
     6361 cagattgaga agctggaaaa aattttccat tcctccatgt tcaactacca gcgccactgg
     6421 tgggaagccg gaaaaaccaa ccgcatccgc aacctgctga agtcacgcca gatcggcgcg
     6481 accttctatt ttgcccgtga agccctgatt gacgccctgc ttaccggacg taaccagatt
     6541 ttcctttctg ccagtaaggc acaggcccac gtcttcaaac agtacatcat cgactttgcc
     6601 aaagaagtgg aggtggagct gaaaggcgat ccgatggtgc ttcccaacgg ggccacactg
     6661 tatttcctcg gcaccaatgc ccgcactgcc cagagttatc acggtaacct gtatctggat
     6721 gaatatttct ggataccgaa atttcaggag ctacgcaaag tggcttccgg tatggctatt
     6781 cacaagaaat ggcggcagac ctatttttcc acaccatcca gtctgaccca cagtgcttat
     6841 ccgttctggt ccggtgcgct gttcaaccgt gggcgcaaca aagctgacaa ggtggacatc
     6901 gacctgtccc acagcaatct ggcccccggc cggctgtgcg cagacgggca ataccgccag
     6961 atagtcaccg tggaagatgc ggtgcgcggc gcctgtaacc tgttcgacct tgaccagttg
     7021 cgcatggagt acagccctga cgaataccag aacctgctga tgtgcgagtt cgtggacgat
     7081 ctcgcgtccg tgttcccgct cagcgaattg caggcgtgca tggtggacag ctgggaagtc
     7141 tggaccgact ttcatgcact ggccctgcgc ccgtttggct ggcgcgaagt gtggatcggt
     7201 tatgacccgg caaaaggtac gcagaacggc gacagcgccg gatgcgtggt ggtggcaccg
     7261 ccagccgtgc caggcggtaa gttccgcatt cttgagcgtc accagtggcg cggaatggac
     7321 tttcgcgccc aggctgacgc catcaaaaaa ctgactgaac agtacaacgt gacctatatc
     7381 ggcatcgact caaccggcgt tggtcacggg gtttacgaga acgtgaaagc gttttttcct
     7441 gccgtccggg agtttgtcta caaccccaac gttaaaaacg ccctggtact caaggcctac
     7501 gacattatca gccaccgccg tcttgagttt gacgccgggc acaccgacat tgcgcagtca
     7561 ttcatggcaa tccgtcgcgc caccaccgcc agcggcaacc gcccgaccta tgaagccagc
     7621 cgcagcgaag aagccagcca tgccgatctg gcctgggcaa caatgcacgc actgtttaac
     7681 gaaccgctgc agggcgagtc cgccaatacc agcaatattg tggagatttt ttgatgggaa
     7741 agagtaagaa gaaccgcgct gcggcgacga aacagaccca gcataaaaac cagacttcag
     7801 ccgaagcatt cagcttcggc gatcccgttc cggttctgga ccgccgtgaa ctactggact
     7861 atgtggaatg cgtacagaca gatcgctggt atgagccgcc agtgagtttt gacggactgg
     7921 cgcgcacctt ccgcgccgcc gtgcatcaca gttcaccaat tgcggtgaaa tgcaacattc
     7981 tgatcagtac ctacatccct cacccgctgc tcagccagca ggctttttca cgttttgtgc
     8041 aggattatct ggtatttggt aacgcttacc tggagaaacg cacaaaccgg ttcggagagg
     8101 tcatcgctct tgagcctgct ctggcaaaat acacccgacg cggattagac ctggatacct
     8161 actggtttgt gcaatacggc atgaccacgc agccgtatca gttcacgaaa ggaagcatct
     8221 ttcatctgat ggaaccggac atcaaccaag agatctacgg cctgccaggt tacctttctg
     8281 ccattccgtc agccctgctc aacgagtccg ccacgctgtt ccgccgatag tattacatta
     8341 acggcagtca tgcaggcttc atcatgtaca tgaccgatgc cgcgcaaaac caggaggatg
     8401 tgaacaacct ccgcaatgcg atgaaaagcg ccaaaggacc aggtaacttc cgcaatctgt
     8461 ttatgtactc gcctaacggc aaaaaggacg ggcttcagat catcccgttg tcagaagtcg
     8521 cggcgaagga tgagtttctg aacatcaaga acgtgagccg ggatgacatg atggcggcgc
     8581 atcgtgtgcc accgcaaatg atggggatta tgcctaataa tgtcgggggg tttggggatg
     8641 tggagaaggc gagcctggag tttgtacgta acgagttaat accgttacaa aaaagaatga
     8701 tggaaataaa taaattggta agtgagaaca ttgttaaatt tgatagttat aaactagcta
     8761 cttaacgtaa tcactaaatg aggttcttta acacagctaa aaaatttatt aatagccagc
     8821 agtttttatg aatttcttca gcgtgcagat acacgctgaa gatgcaaaaa atcatatgag
     8881 acgaccgtct ggacttctgt tacctaaatg taattcacag agtatccacc taatcacatc
     8941 aggtcgaatt aacccagcta caaaaaccga attccaatta tttttacctt tatgtttttc
     9001 atccaacagc aacaactcgc gagtcaacaa ctcatataca tcgctataag tagaaagact
     9061 cttattcagt cctctaataa caagctcagg atataagtaa aacgactccc attgttcaga
     9121 caaatacccc ttaatattat tcttgataac aacattatca agatgatact taacattgtt
     9181 atattctggt gacattgggt caattatgat ttttacatca attgtaggtg ttcgccctaa
     9241 tttagaaaaa ttagcacata ttaatctttg ttttaatata ttatcaaaat atggatgcag
     9301 catccgatgg cctgcagaat tagctatagt agtacttttg aaagtattac atttgcaagc
     9361 aggaaccaaa ttcttagtga ataaagaaaa ttctggatag ttttccttgg gtaaaacatg
     9421 atccaaagtc ccgctatgca ttgaaccaca cattggacat agagagttag aattagctgc
     9481 tcttatatca tcaattatag ataaacactt tgcgggattg ttataataat atctcaaagc
     9541 ttcagcaata ttgttactca atacgccaca agaattgaca ttaagatacc ctttattctt
     9601 tatgtacgat ctatatgcat taagtataaa tgtatcctgt ccattcagaa cagaatgatg
     9661 ttttaatctc ttatttgcag atagtttttt aaatgcagaa taatctttaa aaacaggtct
     9721 ttttaattta ttcatttcaa ttgcccattt catttctcaa cgcagttaat acattaagtg
     9781 ataagtcctc gctatattta gattcaacat catcccaaga catattcttt gcaattatat
     9841 tgttttttac tttatttaaa atttgagttg gttcactctc accgaaaaca aaatatgaga
     9901 tatttcctat attcgcccca aaagtactca atctcggttt ttcgctaaca attaccccat
     9961 catctcgtct tctgagtatt gtcacttgct ccttaaaaac ctcccgaaca agataaaccg
    10021 aatgcgttgc tatgatagct gaagagcctg tcttttctaa taaattatca agcaatgcca
    10081 taaatttatt aataaatgaa ggatggagat gtgtttctgg ctcatctatt aatagaagag
    10141 tcccattctc aatatacaaa cagacttgta cacaaaactt aataaacgat atttccccac
    10201 tactcaaagg gtaacattta ttttcaataa gcctcaaagg ctcgccagag agaataattt
    10261 cagaatataa tgatagtcta gattcttcgc ctcgagaatt aagctcattt aatttaacaa
    10321 atggtgaatt ttcaccgcca catttgatta ctaaatcgtt gttactattt agaacactca
    10381 gtgcatcaac aaatatattc cacctttgat tatagccgat agcgtcgtta ctcctcgcta
    10441 gttgcactat taaatcattc aagtttaatt tggattttga ttcacgattt aaagtcaatc
    10501 ttttgtacca tatcaatgat tttattcttt tatcggttgg aaatgaacac ttactttcat
    10561 ttgttggaga aaaagcaatg agcctactaa tttgaattcg ttcttcaatg ctcacaccgt
    10621 tagaatcaac tacagccacc aaattatcct ttcctttaat cgcagccaat gcgatttctc
    10681 taagcgtttg gctttttcct acaccattct cgcctataat tatggaaatt ctttttggta
    10741 aatcatgctc gtgatcaaaa ttaaaaacat aagatacatc ttcttcatta actttattcg
    10801 aatagctaat cttgatgtgc tgtgataaat tacccaactc ctcatattga ataccggaaa
    10861 gaactgttcc tgcatttttg aaagtaaaat acgactcaga ctctctaatg aaagatttat
    10921 taaagatatc agaagagatt gcttttttcc tcaaattctc tgcactagcg tcacttttct
    10981 tagaaacaac atcattaatg aaatttaata tatatttgga ttcattcacc ccaaaaaatc
    11041 ttactagtct tcgataatta ttcatatcct gaagcatgac aaaataatca ttaaacccct
    11101 catcctttaa attagattct tcctttttct tcactcgcct tatcagttct gcttttccat
    11161 ttcgttcctc ctctgaattc aaaaaaccaa tataaccatt cagtgaaatt atatccttac
    11221 actctttttt attaaaaata gatatttcga ctctactcaa atatccaaaa tcattccaat
    11281 cgcttcttga tgggactatt tttatataat taccagaatc agatatctgt tgattatttg
    11341 taattaaaaa atataaacta taatttttat ttttcttgac taacattatt accctctcac
    11401 ttcattagtg atgatttatt ttggaattat tttacacact tatacctagc gcgcaatcgt
    11461 atccccgcca cgcctgcccg ctttatgtag aggttttcat gcacctgcat gatctacgca
    11521 aaagcccgcc agttctggcg ggccttagca aaaacgatcc tcaaacgatc atgcgatctc
    11581 atgcggcata gacatgcact acagagctaa cgcctcgcaa gggctcgttg ttcaaccttg
    11641 ctgacgccag aagctagttc agacgccagc aacgtttctt aatgcagcca gctgtcgtct
    11701 tcccacacct tctgcataat tttcatcact tgttttcttt cttcgtccag ttgcaatcca
    11761 gtaagttcca caccgttaga gctacctttg cggatacgaa ttaccgtttt gggatacaga
    11821 gggcgcagat tgcggtaaag ctcggattca agagcgtcca gggtagactg gctaatcttc
    11881 tgctctttat cgatcattat ttcaatgcgc ataaaagtca cctcagctga tgacatccat
    11941 tgagcggttg tattcgtggg ttctgatttt tgccatgagt tcatcagtca attcagaaac
    12001 ccactgcaga gccagcccct tctcttcatc actacactca ctagccgcta caagcttaag
    12061 aaaaaaatca atgcgctgga gcttcaaaga ctccaaaaaa tagtcctgca tctttcctcc
    12121 tatgacacca cacgcaatac tgtatgcata accactattt atatttacag tatataataa
    12181 tcttactgat gtaaaacgtt tttttacgtt catcagcctg atatgcctgg tattattaag
    12241 agcacgaatt gttaacccgc gtaattaata caggttccgc cactgatcat cttcctgcaa
    12301 acgctggttc cgatagaaga tacgcaggcc tgctcctgac ggaatactgc ctccgcgaag
    12361 gagtaaatcg acctctttct cgctgccatc aaatcctctg gacttcagct catacacgag
    12421 ctgcagtcgc tgatggtctg taattcgctg tttgtagtct ttacgccgtt tcggtttcac
    12481 caggcgtaac cttgctgcca gttcccggcg ctcttttttg ctcatactgt gcaggtaatc
    12541 gtgcaactcc ttgtcatcca tgctggtaat gtccgttctg gggttcccat cagctgattt
    12601 atctttctcc tgttggttca aattttcagc aaggagacag ttattgccac gagtccaagg
    12661 ggcgcaagcg ccctggtcgg ctgccgcctc ctgaacgtca acggctttac gaaccatttt
    12721 ccacttcact gcatgagtgc agatcttgcc ttctgcaatg ggtgaccaga tgccataaat
    12781 acgaataccg tgatcgccat aggcggtcgg ctcttcattg atttcataag cggttctgat
    12841 caagtgatat ttgcgaggaa ccagcacgcc gccctgcctc ataatgtagg tggcaaaaca
    12901 gccagcatca gcagcagcca ggatggcatc aaggcgcggg ttatccagta ccggcgcacc
    12961 tgcttttttg tcaccctgct gccttgccgc ctgaccagcc aacaaccgca gttcacggta
    13021 agcctgacgc cctggaatac caaagaagcg gaattgctga acacgatgca gagacgccca
    13081 gggattaacg tattcagcgt tatcacgcag ggatttaccc gtttccttgc tgatctcgcc
    13141 agccagacca cgcccgtcaa tgttcttact gatgtatttc gcgatgtagc ttgtcggcgt
    13201 tcctttgcgc gggtttatca gctcagattt aaagcgtgga ccagtgttat tacccagttc
    13261 ctcgcggtct tcacggatgg caaacttacg caacaatgca gtaatggcgc ggcggtcttt
    13321 tttgcgcata aaacacaaca ggtgccagtg aactgtaccg tcatgatgcg gctcagccac
    13381 ccgcacgcca taccagcgca acccggcttt gtgcatcgcc ttacgaaatg cagcaaacat
    13441 gccgaccaga taatcgctgc tttgtcttac cgtcgcattt gtccaggttg ggtttggtct
    13501 gccgttattg agcgtggaat ggaaacgtga cggacaggta atggtgtaga aaacggcgca
    13561 gtcaccgcgc atttccgcga taagctccag acctttaaca caggccatca tctcattgcg
    13621 gcggtgcgcc gggttgctgc tgctggcgtt taccacgtct tccatatcca gcgtgtcgcc
    13681 ctcttcgttc accagttcat gagaacggaa aaactccaat gacttgcggc gctgctcacg
    13741 tttatgcatc acggcttcat agctgacata gggagatgct tttttgctga ccaggcagac
    13801 agcacgcaac tgctcttccc gccattcgca acgcattttc cataatttcc ggtaccacca
    13861 gtcggcgcac aacatacgcg ccagcgaacc cggaatgagt tcatagggca cgggtttacg
    13921 gcggtttctt ttccgacgga gttgctcaaa cgcaggcggg atgacatcca gacgcagggt
    13981 ttccgctgcc accttttccc atgtcttgcg gatttcttct ggcttaacgt catcggtggc
    14041 atacaaatca ccacaagctg catcaaggca catgctcata tgcgcagcga caagggtaga
    14101 caggcgtttc acctgatcct gactcatttc aggcagaatc agcaggccgt ccagccctac
    14161 atggcttgcc ataaaacgaa aagatgcaga tagctggctg tcgcgtacat gctccagtcg
    14221 ttccagacat ggcttaatcg tctcacgtaa atagcgggaa taagcctttg gcctgcccag
    14281 gctgctgaag tattcaatac gttgcatcag cggcttgctg atatgggaag gctgggcgtt
    14341 gacgtccgcc agaatgacca tatccggatt aaaacgctgc tgctcatgcg ccagctttgc
    14401 ccggctaatg agcttatcct gctccatttc gtgctggaca ggatcacgtg attcataaaa
    14461 aaaataacgc tcccagacct gatcactcag tgcctcgcgg cgcaactgtt cctgctcgtt
    14521 atcggcagcg tacagagtga tcaggtttga aagcgcagaa accggcgcaa cttccgccgg
    14581 gtccagataa gggttaatgg cctttttcgg gctgttccat gagaacgctg cggcagcctc
    14641 gttaaagccg cagcagttgt tcatatcggc atggctcatg cacgtactcc gtacacggca
    14701 gaactatcca cgccacgcga ataatcaaat cccacccagc agcgcggccc ggaaacagca
    14761 atgatttctg ttgctgattt accctcgcca gctgccacac cgatgctgcg ttttaccttg
    14821 atatagtggt gagtaaaatt gcgatacagc gaacggatca gggatgtgtc actgttagaa
    14881 acaatgaccg gatgtccttc tgatgaccga tgttcaagaa cggatgctag gtgatactgg
    14941 tcatcttcag tgaaaccatc agtgtgatag ccggaaaacg taccgtcata cggtggatcg
    15001 caatacacca catcccccgc cttcaacatc gccagcgttt catcaaagct ggcgcagata
    15061 aacgttgctc gctgggcttt ttctgcaaat gcgcgaattt ctttttcagg gaaatacgga
    15121 tttttataat tgccgtaggg aatgttgaaa tgcccgctct tgttatagcg acataaacca
    15181 cggtaaccgt gacgattgag atacaggaaa tataccgctt tcatgaaatc agtaatttca
    15241 gttgagtaat taaactcctg ccttatgttg taataagcca cctccctgtt tgcgatctca
    15301 aataaaactc tgg
//
LOCUS       DADMJB010000098        15218 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.098, whole genome shotgun sequence.
ACCESSION   DADMJB010000098 DADMJB010000000
VERSION     DADMJB010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15218)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15218)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15218
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.098"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(47..337)
                     /locus_tag="JN078_002649"
     CDS             complement(47..337)
                     /locus_tag="JN078_002649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HAY9041804.1"
                     /translation="MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYF
                     TDDKRDDGDKTYARLGFKGETQINDQMIGFGHWEYDFKGYNDEANGSRGKNL"
     gene            complement(596..1477)
                     /gene="yddG"
                     /locus_tag="JN078_002650"
     CDS             complement(596..1477)
                     /gene="yddG"
                     /locus_tag="JN078_002650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415990.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid efflux DMT transporter YddG"
                     /protein_id="HAY9041805.1"
                     /translation="MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLS
                     GLLLIFTVGFPRIRQIPKGYLLAGSLLFVSYEICLALSLGYAATRHQAIEAGMVNYLW
                     PSLTILFAILFNGQKTNWLIVPGLLLALVGVCWVLGGENGLHYDEIINNITTSPLSYF
                     LAFIGAFIWAAYCTVTNKYARGFNGITVFVLLTGASLWVYYFLTQQPEMVFSTPVMIK
                     LISAAFTLGFAYAAWNVGILHGNVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGA
                     LMVCGGSLLCWLATRRG"
     gene            1709..4756
                     /gene="fdnG"
                     /locus_tag="JN078_002651"
     CDS             1709..4756
                     /gene="fdnG"
                     /locus_tag="JN078_002651"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:2294..2296,aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HAY9041806.1"
                     /translation="MDVSRRQFFKICAGGMAGTTVAALGFAPKQALAQARNYKLLRAK
                     EIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYV
                     NSENRLRYPEYRAPGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLS
                     TGMLCASGASNETGMLTQKFARSLGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWV
                     DIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIAVDPRFTRTASVADIYAPIR
                     SGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYD
                     KSSWNYQFDENGYAKRDETLTHPRCVWNLLKAHVSRYTPDVVENICGTPKADFLKVCE
                     VLASTSAPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSN
                     IQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLAGQVNYWSNYPKFFVSL
                     MKSFYGDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDK
                     NKVVSCLSKLKYMVVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDG
                     SIANSGRWLQWHWKGQDAPGEARNDGEILAGIYHHLRELYQAEGGKGVEPLMKMSWNY
                     KQPHEPQSDEVAKENNGYALEDLYDANGVLIAKKGQLLSSFAHLRDDGTTASSCWIYT
                     GSWTEQGNQMANRDNSDPSGLGNTLGWAWAWPLNRRVLYNRASADINGKPWDPKRMLI
                     QWNGSKWTGNDIPDFGNAAPGTPTGPFIMQPEGMGRLFAINKMAEGPFPEHYEPIETP
                     LGTNPLHPNVVSNPVVRLYEQDALRMGKKEQFPYVGTTYRLTEHFHTWTKHALLNAIA
                     QPEQFVEISETLAAAKGINNGERVTVSSKRGFIRAVAVVTRRLKPLNVNGQQVETVGI
                     PIHWGFEGVARKGYIANTLTPNVGDANSQTPEYKAFLVNIEKA"
     gene            4769..5653
                     /gene="fdxH"
                     /locus_tag="JN078_002652"
     CDS             4769..5653
                     /gene="fdxH"
                     /locus_tag="JN078_002652"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit beta"
                     /protein_id="HAY9041807.1"
                     /translation="MAMETQDIIKRSATNSITPPSQVRDYKAEVAKLIDVSTCIGCKA
                     CQVACSEWNDIRDEVGHCVGVYDNPADLSAKSWTVMRFSETEQNGKLEWLIRKDGCMH
                     CEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKC
                     TLCVDRVSVGQEPACVKTCPTGAIHFGTKKEMLELAEQRVAKLKARGYEHAGVYNPEG
                     VGGTHVMYVLHHADQPELYHGLPKDPKIDTSVSLWKGALKPLAAAGFIATFAGLIFHY
                     IGIGPNKEVDDDEEDHHE"
     gene            5646..6299
                     /gene="fdnI"
                     /locus_tag="JN078_002653"
     CDS             5646..6299
                     /gene="fdnI"
                     /locus_tag="JN078_002653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit gamma"
                     /protein_id="HAY9041808.1"
                     /translation="MSKSKMIVRTKFIDRVCHWTVVICFFLVALSGISFFFPTLQWLT
                     QTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNIVEVLKGNEHK
                     VADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGI
                     ILIHAILIHMYMAFWVKGSIKGMIEGKVSRRWAKKHHPRWYREIEKAEAKKESEEGI"
     gene            complement(6350..6634)
                     /locus_tag="JN078_002654"
     CDS             complement(6350..6634)
                     /locus_tag="JN078_002654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HAY9041809.1"
                     /translation="MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTG
                     KAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ"
     gene            complement(6780..7790)
                     /gene="adhP"
                     /locus_tag="JN078_002655"
                     /pseudo
     CDS             complement(6780..7790)
                     /gene="adhP"
                     /locus_tag="JN078_002655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415995.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase AdhP"
     gene            complement(7924..9621)
                     /locus_tag="JN078_002656"
     CDS             complement(7924..9621)
                     /locus_tag="JN078_002656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707611.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent malic enzyme"
                     /protein_id="HAY9041810.1"
                     /translation="MEPKTKKQRSLYIPYAGPVLLEFPLLNKGSAFSMEERRNFNLLG
                     LLPEVVETIEEQAERAWIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVNNHLDEMMPV
                     IYTPTVGAACERFSEIYRRSRGVFISYQNRHNMDDILQNVPNHNIKVIVVTDGERILG
                     LGDQGIGGMGIPIGKLSLYTACGGISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRI
                     IDDEYYEFVDEFIQAVKQRWPDVLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQGTAA
                     VTVGTLIAASRAAGGQLSEKKIVFLGAGSAGCGIAEMIIAQTQREGLSEEAARQKVFM
                     VDRFGLLTDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQ
                     TGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVV
                     WKDKIYPIAQCNNAFIFPGIGLGVIASGASRITDEMLMSASETLAQYSPLVLNGEGLV
                     LPELKDIQKVSRAIAFAVGKMAQQQGVAVKTSAEALQQAIDDNFWQAEYRDYRRTSI"
     gene            complement(9778..9915)
                     /gene="sra"
                     /locus_tag="JN078_002657"
     CDS             complement(9778..9915)
                     /gene="sra"
                     /locus_tag="JN078_002657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stationary-phase-induced ribosome-associated
                     protein"
                     /protein_id="HAY9041811.1"
                     /translation="MKSNRQARHILGLDHKISNQRKIVTEGDKSSVVNNPTGRKRPAE
                     K"
     gene            complement(10017..10232)
                     /gene="bdm"
                     /locus_tag="JN078_002658"
     CDS             complement(10017..10232)
                     /gene="bdm"
                     /locus_tag="JN078_002658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310112.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm-dependent modulation protein"
                     /protein_id="HAY9041812.1"
                     /translation="MFTYYQAENSTAEPALVNAIEQGLRAEHGVVTEDDILMELTKWV
                     EASDNDILSDIYQQTINYVVSGQHPTL"
     gene            10578..11009
                     /gene="osmC"
                     /locus_tag="JN078_002659"
     CDS             10578..11009
                     /gene="osmC"
                     /locus_tag="JN078_002659"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin OsmC"
                     /protein_id="HAY9041813.1"
                     /translation="MTIHKKGQAHWEGDIKRGKGTVSTESGVLNQQPYGFNTRFEGEK
                     GTNPEELIGAAHAACFSMALSFMLGEAGFTPTSIDTIADVSLDKVDAGFAITKIALKS
                     EVAVPGIDASTFDGIIQKAKAGCPVSQVLKAEITLDYQLKS"
     gene            complement(11065..11991)
                     /locus_tag="JN078_002660"
     CDS             complement(11065..11991)
                     /locus_tag="JN078_002660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAY9041814.1"
                     /translation="MSDTLLTLRGVHINFPARKNWLGKTTEHVHAINGIDLQIRRGET
                     LGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQMVFQDPLSSLNPRLPVWRI
                     ITEPLWIAKRSSEQQRRALVEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQ
                     PDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYL
                     GQIVELGDAQQVLTAPAHPYTRLLLDSLPAIDKPLEEEWALRKTDLPGNRTLPQGCFF
                     YERCPLATSGCEVRQSLAIREDGRELRCWRAL"
     gene            complement(11984..12970)
                     /locus_tag="JN078_002661"
     CDS             complement(11984..12970)
                     /locus_tag="JN078_002661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAY9041815.1"
                     /translation="MTQPVLDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGES
                     GSGKSVTAMLIMRLLPTGSYCVHRGQISLLGDDVLNAREKQLRQWRGARVAMIFQEPM
                     TALNPTRRIGLQMMDVIRHHQPISRREARAKAIVLLEEMQIPDAVEVMSRYPFELSGG
                     MRQRVMIALAFSCEPQLIIADEPTTALDVTVQLQVLRLLKHKARASGTAVLFISHDMA
                     VVSQLCDSVYVMYAGSVIESGVRADVIHHPRHPYTIGLLQCAPEHGVPRQLLPAIPGT
                     VPNLTHLPDGCAFRDRCYAAGAQCENVPALTACGDNNQRCACWYPQQEVISV"
     gene            complement(12967..13863)
                     /locus_tag="JN078_002662"
     CDS             complement(12967..13863)
                     /locus_tag="JN078_002662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D,D-dipeptide ABC transporter permease"
                     /protein_id="HAY9041816.1"
                     /translation="MMLSEETSAVRPQKQTRFNGAKLIWMLKGSPLTVTGAVIIVLML
                     LMMFFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLV
                     VVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAM
                     LAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQA
                     SLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAV
                     GFNLFGDGIRDLLDPKAGGKQS"
     gene            complement(13860..14882)
                     /locus_tag="JN078_002663"
     CDS             complement(13860..14882)
                     /locus_tag="JN078_002663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAY9041817.1"
                     /translation="MTFWSILRQRCWGLVLVMAGVCVITFIISHLIPGDPARLLAGDR
                     ASDAIVENIRQQLGLDQPLYVQFYRYVSDLFHGDLGTSIRTGRPVLEELRIFFPATLE
                     LAFCALLLALLIGIPLGILSAVWRNRWLDHLVRIMAITGISTPAFWLGLGVIVLFYGH
                     LQILPGGGRLDDWLDPPTHVTGFYLLDALLEGNGEVFFNALQHLILPALTLAFVHLGI
                     VARQIRSAMLEQLSEDYIRTARASGLPGWYIVLCYALPNALIPSITVLGLALGDLLYG
                     AVLTETVFAWPGMGAWVVTSIQALDFPAVMGFAVVVSFAYVLVNLVVDLLYLWIDPRI
                     GRGGGE"
     gene            complement(14884..>15218)
                     /locus_tag="JN078_002664"
     CDS             complement(14884..>15218)
                     /locus_tag="JN078_002664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041818.1"
                     /translation="DIAIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYENSEVDKL
                     LRNALATTDQTQRTRDYQQAQKIVIDDAAYVYLFQKNYQLAMNKEVKGFVFNPMLEQV
                     FNINTMSK"
BASE COUNT         3795 a         3906 c         3893 g         3624 t
ORIGIN      
        1 tgtaatataa ggtcagtgat catattgtga tgggcactta actcaatcag agattcttgc
       61 cgcgcgagcc gttggcttca tcgttatagc ctttaaaatc atattcccag tgaccaaaac
      121 caatcatttg atcattgatt tgcgtttctc ctttaaagcc gagacgggca taagttttat
      181 caccatcgtc acgcttatca tcagtaaaat aacgtagagc ggtaaccttg ccataaaggt
      241 cgagtttatt accatccttg ttatagactt cggcagcgtg tgctacgttc gcagctaaca
      301 aaccagttac aaccaccgca actattttta atttcattta acagaatcct tttaattatc
      361 gtcaaacgta ttttctaaac gaattttaaa cggcgtcatt tataaatgac atactgtttt
      421 taaaatagaa tggtgattaa aaacaatgag aaaaatagat gagataatat tatttatcga
      481 tatgtgatcg aagtcgaaat gagatataag gtgaattact ggtatttgaa atttattttt
      541 taatattgtc ggaatttatc tgattaactg ccgggccgta gacccggcaa ttattttaac
      601 cacgacgtgt cgccagccag cagagcaggg aaccgccgca gaccattagc gcgccttgcc
      661 agaatgagaa cgacagcggg gcgctgagca gcacggctgc aagcgctgag gaaagtacgg
      721 gcgtaaaata cgagcctacc gccattatgg tgacattgcc atgcaatata ccgacattcc
      781 atgcagcata agcaaatcct aaggtaaatg ccgcagagat gagtttaatc atgacgggcg
      841 tgctaaatac catttctggt tgttgcgtaa gaaaatagta aacccacaga cttgctcccg
      901 ttagcaggac aaaaacggta attccgttaa atccgcgtgc gtatttattc gttactgtgc
      961 aataggctgc ccagataaac gcaccaataa acgccaggaa ataactcaat gggctggtgg
     1021 tgatattatt gatgatttca tcataatgta acccattctc accgcctaac acccagcaga
     1081 cgccgaccag ggctaataat aatcctggta caatcagcca gttggttttc tgaccattaa
     1141 acagaatggc aaagagaatt gtcaggctgg gccacagata gttcaccata cccgcttcaa
     1201 tcgcctgatg acgggtcgcc gcatacccta aggaaagcgc cagacagatt tcatagctga
     1261 cgaataacag actcccggcg agtaaatagc ctttcggaat ctgccgaata cgcggaaatc
     1321 caaccgtgaa gattaacagc agcccgctta atgaatagat agcagctgcg ccgccgaccg
     1381 ggccgagccc ctcgctgaca ccgcgaatca atcctaccat cgtgctccac aggacgatcg
     1441 ctattagccc tatgagcgtt gctttttgtc gtgtcatgct cgctgttttg tctctcttgc
     1501 cgttaaaaat taagctgaat tttatagcat ttttttaact ggcctgtcag gcagtggtgc
     1561 gtttttctac cgctattgag gtaggtcaat ttgcgcaggc ggattatttt gtggcaaaca
     1621 cgtgttcttt ttgatttcgc gcaaaaagat tcagaatttt actgttagtt tcctcgcgca
     1681 gtaatatccc tgaaaaaaga ggaaagcaat ggacgtcagt cgcagacaat tttttaaaat
     1741 ctgcgcgggc ggtatggctg gaacaacggt agcggcattg ggctttgccc ctaagcaagc
     1801 actggctcag gcgcgaaact acaaattatt acgcgctaaa gagatccgta acacctgcac
     1861 atactgttcc gtaggttgcg ggctattgat gtatagcctg ggtgatggcg cgaaaaacgc
     1921 cagagaagcg atttatcaca ttgaaggtga cccggatcat ccggtaagcc gtggtgcgct
     1981 gtgcccaaaa ggggccggtt tgctggatta cgtcaacagc gaaaaccgtc tgcgctaccc
     2041 ggaatatcgt gcgccaggtt ctgacaaatg gcagcgcatt agctgggaag aagcattctc
     2101 ccgtattgca aagctgatga aagctgaccg tgacgctaac tttattgaaa agaacgagca
     2161 gggcgtaacg gtaaaccgtt ggctttctac cggtatgctg tgtgcctccg gtgccagcaa
     2221 cgaaaccggg atgctgacac agaaatttgc ccgctccctc gggatgctgg cggtagacaa
     2281 ccaggcgcgc gtctgacacg gaccaacggt agcaagtctt gctccaacat ttggtcgcgg
     2341 tgcgatgacc aaccactggg tggatatcaa aaacgctaac gtcgtaatgg taatgggcgg
     2401 taacgctgct gaagcgcatc ccgtcggttt ccgctgggcg atggaagcga aaaacaacaa
     2461 cgatgcaacc ttgatcgctg tcgatcctcg ttttacgcgt accgcttctg tggcggatat
     2521 ttacgcacct attcgttccg gtacggacat tacgttcctg tctggcgttt tgcgctacct
     2581 gatcgaaaac aacaaaatca acgccgaata cgttaaacat tacaccaacg ccagcctgct
     2641 ggtgcgtgat gattttgctt tcgaagacgg cctgttcagc ggctacgacg ctgaaaaacg
     2701 ccagtatgat aagtcgtcct ggaactatca gttcgatgaa aacggctatg caaaacgcga
     2761 tgaaacactg actcatccgc gctgtgtgtg gaacctgctg aaagcgcacg tttcccgcta
     2821 cacgccggac gtcgttgaaa acatctgcgg tacgccaaaa gccgacttcc tgaaagtgtg
     2881 tgaagtgctg gcctccacca gcgcaccgga tcgcacaacc accttcctgt acgcgctggg
     2941 ctggacgcag cacaccgtgg gtgcgcagaa catccgtact atggcgatga tccagttgct
     3001 gctcggtaac atgggtatgg ccggtggcgg cgtgaacgca ttgcgtggtc actccaacat
     3061 tcaggggctg actgacttag gtctgctctc taccagcctg ccaggttatc tgacgcttcc
     3121 gtcagaaaaa caggttgatt tgcagtcgta tctggaagcg aacacgccga aagcgacgct
     3181 ggctggtcag gtgaactact ggagcaacta tccgaagttc ttcgttagcc tgatgaaatc
     3241 tttctatggc gatgccgcgc agaaagagaa caactggggc tatgactggc tgccgaagtg
     3301 ggaccagacc tacgacgtca tcaagtattt caacatgatg gacgaaggca aagtcaccgg
     3361 ttatttctgc cagggcttta acccggttgc gtccttcccg gacaaaaaca aagtggtgag
     3421 ctgcctgagc aagctgaagt acatggtggt tatcgatccg ctggtgactg aaacctctac
     3481 cttctggcag aaccacggcg agtcgaacga tgtcgatccg gcgtctattc agactgaagt
     3541 attccgtctg ccttcgacct gctttgccga agaagatggt tctatcgcta actccggtcg
     3601 ctggttgcag tggcactgga aaggtcagga cgcgccgggc gaagcgcgta acgacggcga
     3661 aattctggcg ggtatctacc atcatctgcg cgagctgtac caggccgaag gtggtaaagg
     3721 cgtagaaccg ctgatgaaga tgagctggaa ctacaagcag ccgcacgaac cgcaatctga
     3781 cgaagtggct aaagagaaca acggctacgc gctggaagat ctctatgacg ctaatggcgt
     3841 gcttattgcg aagaaaggtc agttgctgag tagctttgcg catctgcgtg atgacggtac
     3901 aaccgcatct tcttgctgga tctacaccgg tagctggaca gagcagggca accagatggc
     3961 taaccgcgat aactccgacc cgtccggtct ggggaatacg ctgggatggg cctgggcgtg
     4021 gccgctcaac cgtcgcgtgc tgtacaaccg tgcttcggcg gatatcaacg gtaaaccgtg
     4081 ggatccgaaa cggatgctga tccagtggaa cggcagcaag tggacgggta acgatattcc
     4141 tgacttcggc aatgccgcac cgggtacgcc aaccgggccg tttatcatgc agccggaagg
     4201 gatgggacgc ctgtttgcca tcaacaaaat ggcggaaggt ccgttcccgg aacactacga
     4261 gccgattgaa acgccgctgg gcactaaccc gctgcatccg aacgtggtgt ctaacccggt
     4321 tgttcgtctg tatgaacaag acgcgctgcg gatgggtaaa aaagagcagt tcccgtatgt
     4381 gggtacgacc tatcgtctga ccgagcactt ccacacctgg accaagcacg cattgctcaa
     4441 cgcaattgct cagccggaac agtttgtgga aatcagcgaa acgctggcgg cggcgaaagg
     4501 cattaataat ggcgagcgtg tcactgtctc cagcaagcgt ggctttatcc gcgcggtggc
     4561 tgtggtaacg cgtcgtctga aaccgctgaa tgtaaatggt cagcaggttg aaacggtggg
     4621 tattccaatc cactggggct ttgagggtgt cgcgcgtaaa ggttatatcg ctaacactct
     4681 gacgccgaat gtcggtgatg caaactcgca aacgccggaa tataaagcgt tcttagtcaa
     4741 catcgagaag gcgtaagggg gcgaacagat ggctatggaa acgcaggaca ttatcaaaag
     4801 gtccgcaact aactccatca cgccgccttc tcaggtgcgt gattacaaag cagaagtcgc
     4861 aaaacttatc gacgtttcca cctgtatcgg ctgtaaagcc tgtcaggtgg cgtgttcgga
     4921 gtggaacgac atccgtgatg aagtggggca ctgcgtcggg gtttacgata accccgccga
     4981 tctgagcgcc aagtcctgga cggtgatgcg ctttagcgaa accgaacaga acggcaagct
     5041 ggagtggctg atccgtaaag acggctgtat gcactgtgaa gatcccggct gcctgaaggc
     5101 gtgcccgtct gctggtgcaa tcattcagta cgctaacggg attgtcgatt tccagtcgga
     5161 aaactgcatc ggctgtggtt actgcattgc cgggtgtccg tttaatattc cgcgcctcaa
     5221 caaagaggat aaccgggtat ataaatgcac gctctgcgtc gatcgcgtca gcgtcggcca
     5281 ggaaccggct tgtgtgaaaa cctgtccgac cggggctatc cacttcggca ccaagaagga
     5341 gatgctggag ctggcggaac agcgcgtggc gaaactgaaa gcgcgtggtt acgaacatgc
     5401 tggcgtctac aacccggaag gggtcggtgg tacgcacgtt atgtacgtgc tgcatcacgc
     5461 cgatcagccg gagctgtatc acggtctgcc gaaagatccg aagatcgaca cctcggtaag
     5521 cctgtggaaa ggcgcgttga aaccgctggc agcggctggc tttattgcca cttttgccgg
     5581 gttgattttc cactacatcg gtattggccc gaataaggaa gtggacgatg acgaggagga
     5641 tcatcatgag taagtcgaaa atgattgtgc gcaccaaatt tattgatcgc gtctgtcact
     5701 ggaccgtggt gatttgcttc ttcctggtgg cgctgtccgg gatttcgttc ttcttcccga
     5761 cgctgcaatg gctgacgcaa accttcggta cgccgcagat gggacgcatt ttgcacccgt
     5821 tcttcggcat tgcgattttc gtcgcgctga tgtttatgtt tgtgcgtttt gtgcatcaca
     5881 acatcccgga taagaaagat attccgtggc tattgaacat tgtcgaagta ttaaaaggca
     5941 atgagcacaa agtggcggat gttggtaagt acaacgccgg gcaaaagatg atgttctggt
     6001 cgatcatgag catgattttc gtgctgttgg tgaccggggt gattatctgg cgtccgtact
     6061 ttgcgcagta cttcccgatg caggttgttc gctacagcct gctgatccac gcggctgccg
     6121 gtatcatcct gatccacgcc atcctgatcc atatgtatat ggcattctgg gtgaaaggat
     6181 cgattaaagg gatgatcgaa gggaaggtaa gccgtcgctg ggcgaagaaa caccatccgc
     6241 gctggtatcg tgaaatcgag aaggcagaag cgaaaaaaga gagtgaagaa gggatataat
     6301 ctcttttgaa ctttaagctg aaaatggcgc tttaagaagc gccatttttt tattgcgtaa
     6361 ccagacggcg cagtcgcgac acatccaccg ttttttcagc ctctgccaga ctccaggcgt
     6421 tttgcagatt cagccacatt tgcggcgaac tgccgatcac cacggaaagt ttaattgcca
     6481 tttctggcgt caaagctgct tttccggtca gcaatcggct tgccgttgag ggcgcaattt
     6541 ccattgctct ggcaaactcg cgcaggctga cattaagttc gtccagtgat tcctgaataa
     6601 tgtcccccgg gcggggatga ttggccattt tcattagtgt ctttactctc agtagcgttc
     6661 cttctctggg aacactatca ttattgttcc ttcctacgca acaataatcc atttagccat
     6721 ttcatgttgg agagtgtgcg atgctgcgac ccgaacatgg gagtcgcagc aaagacctct
     6781 tagtgacgga aatcaatcac catacggcca cggattttgc cttcttccat ctcggtaaag
     6841 atggtgttga tgtccgctaa cggacgcagg gcgactttcg gcaccacttt gccttcggcg
     6901 gcaaactgga aggcttcggt tagatcctgg cgcgtgccga ccagcgaacc gaccacttca
     6961 atgccatcca gcacaagacg tgggatatcc aggctcatag actccggcgg cagaccgaca
     7021 gccacaacac gaccgcctgc acggacagca tcaactgccg agttaaacgc agctttagct
     7081 actgctgtta ccaccgcagc gtgagcgcca ccggttttct cctgcacaat ttaggcggcg
     7141 tcttcggtgc gtgagttaat cgctaaatct gcacccattt cggttgccag ttttaactgc
     7201 tcatcattga catcaatggc gatcactttg gcgttaaaga cattcttcgc gtattgcagg
     7261 gcgaggttac ccagaccgcc aagaccgtag atagcaatcc actgaccggg acgaattttt
     7321 gacagtttaa cggctttgta ggtggtgacc cccgcacagg taatgctgct ggccgccgcc
     7381 gagtccagac catctggcac ttttaccgcg taatcggcga ccacgatgca ctcttccgcc
     7441 atcccgccat caacgctgta tccggcattt ttaactgaac ggcagagcgt ttcgttacca
     7501 ctgttacagt attcgcaatg accgcatcct tcgtaaaacc acgccacgct ggcacgatcg
     7561 cctggtttta atgaggtgac acctgggcca acttctgcca ccacaccgat gccttcatgg
     7621 cccagaatta ccccagtttt gtcaccaaaa tcgccattct taacatgaag atcggtatga
     7681 catacaccac aacactccat tttcagcagg gcttcgccat gtttcagtga gcgcagtgtt
     7741 ttatccgtaa cgtcaacatg atgatccttc gtaacaactg cagccttcat agttcctcct
     7801 tttcggatga tgttctgcat agcaggtgag gcaaatgaga tttattcgcc actacccagt
     7861 atggatgaga tctgaaaaag ggagagggaa atagcccggt agccttcact accgggcgca
     7921 ggcttagatg gaggtacggc ggtagtcgcg gtattcggct tgccagaaat tatcgtcaat
     7981 ggcttgttgc aaagcttcag cagacgtttt caccgccacg ccttgctgct gcgccatttt
     8041 gccaaccgca aacgcaattg cgcgggagac tttctgaata tctttcagtt ccggtagtac
     8101 cagaccttcg ccgttcagca ccagcggcga atactgagca agcgtttcac ttgctgacat
     8161 cagcatctca tcggtgatac gtgacgcgcc ggaagcaata acacccagcc cgatgccagg
     8221 gaaaataaag gcgttgttac actgggcgat agggtagatt ttatctttcc ataccactgg
     8281 attaaacggg ctgccagtgg cgaccagcgc gttaccttcg gtccaggcga taatgtcctg
     8341 cggtgtggct tccacgcgtg acgtcgggtt agacagcggc atcacgatcg gacgcggaca
     8401 gtgtttatgc atctcacgga tgatctcttc cgtaaacagc ccggtctgtc ctgagacgcc
     8461 aatcagaata tctggtttta cattgcgcac cacatccagc agtgacagca catcgctgtc
     8521 ggtatcccag tcactgaggt tttcgcgttt ctgcaccagt ttggtctgga aaggcagcag
     8581 gttcggcatc ttgtccgtca gcaggccaaa gcgatcgacc ataaagactt tctgccgcgc
     8641 cgcttcctcg cttaatcctt cgcgctgggt ctgggcgatg atcatttcgg caatgccgca
     8701 tcccgctgaa cctgcaccaa ggaagacgat ttttttctcg cttaactgac cacctgccgc
     8761 tcggcttgct gcgatcagtg tgccgactgt taccgccgca gtgccctgaa tgtcatcgtt
     8821 aaaagaacaa atttcattgc gatagcggtt aagtaacggc atcgcatttt tttgagcaaa
     8881 gtcttcaaac tgcaacagca cgtctggcca gcgttgtttc acagcctgga taaattcatc
     8941 aacgaattca tagtattcgt cgtcaatgat acgcggatta cgccagccca tatacagcgg
     9001 atcgttaagc agctgttggt tgttcgttcc gacatccagc accaccggaa gggtatacgc
     9061 cgggctgatg ccgccacagg cggtatagag cgacagttta ccgatcggaa tgcccatccc
     9121 gccgatgccc tggtcaccaa gccccagaat acgttcaccg tcagtcacca caatcacttt
     9181 gatattatgg ttcggtacgt tttgcagaat atcgtccata ttgtggcggt tctggtaaga
     9241 gataaacacg ccgcgtgaac ggcggtagat ctcagaaaaa cgctcacagg ctgcgccgac
     9301 ggttggggta taaataacag gcatcatctc atcaagatga ttgtttacca gacggtagaa
     9361 gagggtttcg ttggtgtcct ggatgttacg caggtagatg tgtttgtcga tttcggtttt
     9421 gaatccctga tactggatcc atgctcgttc cgcttgttct tcgatggttt cgaccacttc
     9481 cggcagtaac cccagcaggt tgaagttacg gcgttcttcc atgctgaagg cactgccttt
     9541 attcaacaac ggaaattcca gcagtacagg gccagcgtaa gggatataaa gcgaacgctg
     9601 tttttttgtt tttggttcca tgtcactcac tcttttttga atatccatcc ctggcacgct
     9661 tttatcgtct ttgctttacc gccagggcgt cggccccaag tataaagcag ataaaaacaa
     9721 aaacaccatt gcgcaggcaa tggtgtttaa tcgtcattga ggactgatgg ttatgaatta
     9781 cttttcagcg gggcgttttc tgccggttgg gttatttacc acgctggatt tgtcaccttc
     9841 ggtaactatt ttgcgctggt tagaaatttt atggtccagt ccaagaatat gacgtgcctg
     9901 acggttcgat ttcattttaa ctcctcaatc ctgttgctag ttttaaggac aacatcgccg
     9961 tagcgaagaa acacgtgcta aacccctaaa ttaggttgcc gatcaagcat agcaccttaa
    10021 agcgtagggt gctggccact gaccacataa ttgatcgttt gctggtagat atcactgagg
    10081 atgtcgttat cagaagcttc cacccatttg gtcagctcca tgagaatgtc atcttcagtg
    10141 acaacaccgt gctctgcccg aaggccttgc tcaatggcat taaccagagc gggttctgct
    10201 gttgaatttt ctgcctgata ataagtaaac atagtgattc tccgtgtctg tgtatttatg
    10261 gtgtttgcta cggatcgcag atttataaag cacattcagc atggcaaata tttgccgctt
    10321 tgttgttaag attagtcctt gttgatgatt tttatatttt aacctcatga tattgatagg
    10381 tattattatt gtggtgagtt gattaatatt aatgcaatat ctcttgggtt atatattccc
    10441 ggttatctat tgtggaaatt taatttaagt gcagaagtaa tatttctgcc ggatttttat
    10501 tcggaatatc ctgcttatcc tcgtgctgtt tctcacgtag tctataattt cctttttaag
    10561 cccacatgag agcaacaatg acaatccata agaaaggtca ggcacactgg gaaggcgata
    10621 tcaaacgcgg gaagggaaca gtatccaccg agagtggcgt gctgaaccaa cagccgtatg
    10681 gatttaacac gcgttttgaa ggcgaaaaag gaactaaccc tgaagaactg attggcgcag
    10741 cgcatgccgc atgtttctca atggcgcttt cattcatgct gggggaagcg ggatttacgc
    10801 caacatcgat tgataccatc gccgatgtgt cgctggataa agtggatgcc ggttttgcga
    10861 ttacgaaaat cgcactgaag agtgaagttg cggtgccggg tattgatgcc tctacctttg
    10921 acggcatcat ccagaaagca aaagcaggat gcccggtctc tcaggtactg aaagcggaaa
    10981 ttacgctgga ttaccagttg aaatcgtaaa gcattgccgg atgacgtgtc aggcgcgtga
    11041 atgcctgatg cgttgttagc atctctacag cgcccgccag caccggagct cacgtccgtc
    11101 ctcccttatt gctaatgatt gccggacttc acatccgctg gttgcaaggg ggcaacgttc
    11161 gtagaaaaaa cagccttgcg gcaacgtgcg gtttcccggc agatccgttt tacgtaatgc
    11221 ccattcttcc tccagcggtt tatcaatggc ggggagggaa tccagcaata atcgggtgta
    11281 tggatgtgcc ggagccgtta gcacctgttg cgcgtcgccc agttctacaa tctgcccgag
    11341 atacatcacc gccacccgat cgctcatatg acgtatcacc gagacattgt gtgaaatcag
    11401 cacataggtc agcccgtgat tttcctgtag cgttaccagt aaattgagga tctgcgcctg
    11461 cacggagata tccagcgcag aggttggctc atcaagcaca atcacgtcag gctgcgaaga
    11521 gagtgctctg gcaatggcga tacgttgccg ctgcccgccg gagaacgcat gaggcaggcg
    11581 gtcgagatac tccggacgaa tacccacctg cacagccagc tcctctacca acgctcgccg
    11641 ctgttgttca ctactacgct tagctatcca gagcggttct gtgatgatgc gccacaccgg
    11701 taagcgcgga ttgagcgaag agagcgggtc ctgaaacacc atctgcataa tgcgttgtga
    11761 gccagaacgg atgtactgcc cgtggctcgg ttgcagcata cccattaaaa gctgtgcgag
    11821 ggtgcttttg ccgcagcctg actcgccgac gatccctaag gtttcaccac ggcggatctg
    11881 taaatcaata ccattaatcg catgaacatg ttccgtagtt ttaccaagcc agtttttacg
    11941 ggccgggaaa ttgatatgga cgccgcgtaa cgttaataac gtgtcagaca cttatgacct
    12001 cctgctgcgg ataccaacag gcgcagcgct ggttgttgtc accacacgct gtcagcgccg
    12061 ggacgttttc acactgtgca cctgccgcat agcaacgatc gcgaaaagcg cagccgtcag
    12121 gcaaatgggt gaggtttggt accgtccctg gaatggcggg taatagctgg cgtggtactc
    12181 catgttctgg tgcacattgg agcaaaccaa tggtatacgg atgccgggga tgatggataa
    12241 cgtctgccct cacgccgctt tcaattacgc ttccggcata catcacgtaa acgctatcgc
    12301 acagttgcga caccacggcc atatcatggc tgatgaacag aaccgcagtt ccactggcgc
    12361 gggctttatg tttaagcaaa cgcagtacct gcaactgcac cgtgacgtcc agcgccgtag
    12421 tcggttcgtc ggcaataatc aattgcggct cgcaggagaa tgccagcgca atcattaccc
    12481 gctggcgcat accacctgaa agctcaaacg gatagcgcga cataacttcc acggcatccg
    12541 ggatttgcat ctcttccagc aggacaatcg ctttagctct ggcttcccga cgacttattg
    12601 gttgatgatg gcggatcacg tccatcatct gaagacctat tcgacgtgtc ggattgaggg
    12661 cggtcatcgg ttcctgaaag atcatcgcca ctcgtgcgcc gcgccactga cgaagctgtt
    12721 tttcccgagc gttaagaaca tcgtctccca gcagtgaaat ctgcccccga tgtacgcaat
    12781 aactgcccgt cggtagcaga cgcataatca gcattgcggt gactgattta cctgagccgg
    12841 attctcccac cagaccgaca atttcaccgc ggttaatctg caaggacaca ttgttgagcg
    12901 cgtgaacatc accgttaaaa ccggggaaac tcaaatgcag ctgttgaatg tccagaacgg
    12961 gctgggtcat gactgctttc ctcctgcttt cgggtcaagc agatcgcgaa taccatcacc
    13021 aaagagatta aacccaacgg cggtaagcaa aatcgctgcc cctggaaatg cgcaatacca
    13081 ccactgatcg agtacatagt tgcgaccatt cgctaccatc gcgccccatt cagcactcgg
    13141 ttgttgagca cccaggccaa taaatcccaa cgtggcggcc attaaaatcg cgctaccgat
    13201 atccagcgat gcctgcacga tcagcggcgg cagggagtta cgtaaaatat gccagctgat
    13261 cagatgccaa cgcgacgcac caaaggtttt cgccgcctga acataggtat actggcgtac
    13321 aactaatgct tgcccccgcg ccaggcgcac ataaaaggga attcgcacaa tagcaatcgc
    13381 cagcatggcg ttaaataaac tcggcccgag agcggcagcc agtgccattg tcagtaccaa
    13441 cgaaggaatc gacagcataa tgtccatgat gcgcatgatg atggcgtctg cgcgtccgcc
    13501 aagcacaccg gatagacatc cgagtagcga accaatcata cccgcaatgg caaccacgac
    13561 taatccggcg agaattgatt gctgactgcc gaccagtacg cggctgaaca gatcgcgtcc
    13621 cacttcatcg gtgccaaacc agtgcgccgc agaaggcggc aaaaggcggg cggttaaatc
    13681 aatggcgttg ggatcatgcg tcgcaagcca cggtgaaaaa aacatcatca atagcattaa
    13741 tacaatgatg actgcgccgg tcacggtgag cggactgcct ttcagcatcc atatcagttt
    13801 tgcaccgtta aatcgcgttt gtttttgtgg gcgtacggcg gacgtttcct cgcttagcat
    13861 cattcaccac ctccacgtcc gatacgcgga tcaatccaca aatagagcaa atccaccacc
    13921 aggttgacca gcacataagc aaatgaaacc acgacggcaa agcccatcac tgccgggaag
    13981 tcgagcgcct gtattgatgt tactacccat gcacccattc cgggccaggc aaaaacggtt
    14041 tcggtgagca ctgcgccata caacaaatcg cccagcgcca gacccaatac ggtaatcgat
    14101 gggatcaacg cattgggtag cgcataacat aaaacgatat accagccggg caagccgctg
    14161 gcccgggcgg tacgaatgta gtcttcactc aattgttcca gcatcgctga gcggatctgg
    14221 cgagcgacaa ttcccaggtg aacgaacgcc agcgttaatg ccggtaagat gagatgttgc
    14281 aacgcattga agaagacttc accgttgcct tcaagcagcg catcgagcag ataaaagccg
    14341 gtaacgtgcg ttggtggatc cagccagtca tcaagccttc cgccgccggg aagaatttgc
    14401 agatgaccat aaaacagcac aatgacgccc agtccaagcc aaaacgcagg tgtggagatt
    14461 ccggtaatgg ccattattcg caccagatga tccagccagc gatttcgcca gactgcagag
    14521 agtatgccca gcgggatgcc aatcaggagt gccagcagca gggcacaaaa agccagttcc
    14581 agcgtcgccg ggaaaaatat acgcaactct tccaacaccg gacgcccggt acgaatggat
    14641 gttcccaggt caccatgaaa caggtcgctg acgtagcggt aaaactgtac atacagtggc
    14701 tggtccagtc ccagttgctg gcgaatattt tccacgatag catcgctggc gcggtcaccc
    14761 gccagtaacc gcgccggatc gccagggatc agatgcgaga taataaacgt aatcacgcag
    14821 acgcccgcca tcacgagcac cagcccccag cagcgttggc gtaaaatact ccagaaggtc
    14881 acgttattta ctcatggtat tgatattgaa gacctgttcc agcatgggat tgaacacaaa
    14941 gcctttcacc tctttgttca tcgccagttg gtagtttttc tggaacaggt acacataagc
    15001 agcgtcatca atgacgattt tctgtgcctg ctggtagtcc cgggtacgct gcgtctggtc
    15061 ggtggtcgca agcgcattgc gcagtaactt atcgacctca ctgttttcat agaacgagcg
    15121 gttacccggc agaccttttt tgtctgactc aaaccagtaa ttcataaaca tatacgggtc
    15181 ggcaaaatcc ggactccagt tgccaatcgc aatgtcgt
//
LOCUS       DADMJB010000099        15120 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.099, whole genome shotgun sequence.
ACCESSION   DADMJB010000099 DADMJB010000000
VERSION     DADMJB010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15120)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15120)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15120
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.099"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..421
                     /locus_tag="JN078_002665"
     CDS             <1..421
                     /locus_tag="JN078_002665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HAY9041819.1"
                     /translation="LMNNSDARKTSALLFLDGDNFKYINDTWGHATGDRVLIEIAKRL
                     AEFGGLRHKAYRLGGDEFAMVLYDVQSESEVQQICSALTQIFNLPFDLHNGHQTTMTL
                     SIGYAMTIEHASAEKLQELADHNMYQAKHQRAEKLVR"
     gene            437..919
                     /locus_tag="JN078_002666"
     CDS             437..919
                     /locus_tag="JN078_002666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HAY9041820.1"
                     /translation="MIKHLVAPLIFTSLILTGCQSPQGKFTPEQVAAMQSYGFTESAG
                     DWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNE
                     GLSLKRANVVADAWAIGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP
                     "
     gene            complement(996..1343)
                     /gene="rplS"
                     /locus_tag="JN078_002667"
     CDS             complement(996..1343)
                     /gene="rplS"
                     /locus_tag="JN078_002667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012768745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HAY9041821.1"
                     /translation="MSNIIKQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFE
                     GVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRE
                     RTGKAARIKERLN"
     gene            complement(1385..2152)
                     /gene="trmD"
                     /locus_tag="JN078_002668"
     CDS             complement(1385..2152)
                     /gene="trmD"
                     /locus_tag="JN078_002668"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HAY9041822.1"
                     /translation="MWIGIISLFPEMFRAITDYGVTGRAVKNGLLSIQSWSPRDFTHD
                     RHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSEL
                     ATNQKLILVCGRYEGIDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVSRFIPGVL
                     GHEASATEDSFAEGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWL
                     RRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA"
     gene            complement(2183..2731)
                     /gene="rimM"
                     /locus_tag="JN078_002669"
     CDS             complement(2183..2731)
                     /gene="rimM"
                     /locus_tag="JN078_002669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000043333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HAY9041823.1"
                     /translation="MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY
                     QPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLE
                     EGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLD
                     GQVIKKVDLTTRSIEVDWDPGF"
     gene            complement(2750..2998)
                     /gene="rpsP"
                     /locus_tag="JN078_002670"
     CDS             complement(2750..2998)
                     /gene="rpsP"
                     /locus_tag="JN078_002670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HAY9041824.1"
                     /translation="MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIAS
                     EKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVNKAA"
     gene            complement(3135..4496)
                     /gene="ffh"
                     /locus_tag="JN078_002671"
     CDS             complement(3135..4496)
                     /gene="ffh"
                     /locus_tag="JN078_002671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HAY9041825.1"
                     /translation="MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVA
                     LPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAV
                     VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF
                     PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETL
                     FVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVG
                     EKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDF
                     LEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPE
                     IIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMMPPGF
                     PGR"
     gene            4588..5454
                     /locus_tag="JN078_002672"
     CDS             4588..5454
                     /locus_tag="JN078_002672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311501.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YpjD"
                     /protein_id="HAY9041826.1"
                     /translation="MQRLEQRSPDAILLLFLIAQTVDITMPVFALLALVAYSVSLALI
                     VPGLLQKNGGWRRMAIISAVIALVCHAIALEARILPDGDSGQNLSLLNVGSLVSLMIC
                     TVMTIVASRNRGWLLLPIVYAFALINLALATFMPNEYITHLEATPGMLVHIGLSLFSY
                     ATLIIAALYALQLAWIDYQLKNKKLAFNQEMPPLMSIERKMFHITQIGVVLLTLTLCT
                     GLFYMHNLFSMENIDKAVLSIVAWFVYIVLLWGHYHEGWRGRRVVWFNVAGAVILTLA
                     YFGSRIVQQLIS"
     gene            5475..6761
                     /locus_tag="JN078_002673"
     CDS             5475..6761
                     /locus_tag="JN078_002673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026171.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HAY9041827.1"
                     /translation="MEHISTTTLIIILIIMVVISAYFSGSETGMMTLNRYRLRHMAKQ
                     GNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLT
                     FVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNAITRMLMRMMGIK
                     TDIVVSGSLSKEELRTIVHESRSQISRRNQDMLLSVLDLEKMTVDDIMVPRSEIIGID
                     INDDWKSILRQLSHSPHGRIVLYRDSLDDAISMLRVREAWRLMSEKKEFTKETMLRAA
                     DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMS
                     PTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGT
                     RVRIGEYDIDILDVQDNMIKQVKVFPVKPLRESVAE"
     gene            complement(6816..7409)
                     /gene="grpE"
                     /locus_tag="JN078_002674"
     CDS             complement(6816..7409)
                     /gene="grpE"
                     /locus_tag="JN078_002674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HAY9041828.1"
                     /translation="MSSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKI
                     ANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSL
                     DRALEVADKANPDMSAMVEGIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMV
                     ESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAKA"
     gene            7532..8410
                     /gene="nadK"
                     /locus_tag="JN078_002675"
     CDS             7532..8410
                     /gene="nadK"
                     /locus_tag="JN078_002675"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020239499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HAY9041829.1"
                     /translation="MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCKKGYEVIVEQQIA
                     HELQLKNVKTGTLAEIGQLADLAVVVGGDGNMLGAARTLARYDIKVIGINRGNLGFLT
                     DLDPDNAQQQLADVLEGHYISEKRFLLEAQVCQQDCQKRISTAINEVVLHPGKVAHMI
                     EFEVYIDEIFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSA
                     RPLVINSSSTIRLRFSHRRNDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYS
                     YFNTLSTKLGWSKKLF"
     gene            8496..10157
                     /gene="recN"
                     /locus_tag="JN078_002676"
     CDS             8496..10157
                     /gene="recN"
                     /locus_tag="JN078_002676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HAY9041830.1"
                     /translation="MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGL
                     CLGGRAEADMVRTGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGR
                     SRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
                     ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLA
                     NSGQLLTTSQNALALMAYGEDANLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQ
                     IAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPEALPQYYQSLLEEQQ
                     QLDDQADSQETLALAVTKHHQQALEIARALHQQRQQYAEELAQLITDSMHALSMPHGQ
                     FTIDVKFDEHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALATQVITARK
                     METPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHYFVSKE
                     TDGAMTETHMQSLNKKARLQELARLLGGSEVTRNTLANAKELLAA"
     gene            10306..10647
                     /gene="bamE"
                     /locus_tag="JN078_002677"
     CDS             10306..10647
                     /gene="bamE"
                     /locus_tag="JN078_002677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417107.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HAY9041831.1"
                     /translation="MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVS
                     KIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLT
                     NIDNKPALSGN"
     gene            complement(10709..10999)
                     /locus_tag="JN078_002678"
     CDS             complement(10709..10999)
                     /locus_tag="JN078_002678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417108.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HAY9041832.1"
                     /translation="MPGKIAVEVAYALPEKQYLQRVTLQEGATVEEAIRASGLLELRT
                     DIDLTKNKVGIYSRPAKLSDSVHDGDRVEIYRPLIADPKELRRQRAEKSANK"
     gene            complement(10989..11465)
                     /gene="ratA"
                     /locus_tag="JN078_002679"
     CDS             complement(10989..11465)
                     /gene="ratA"
                     /locus_tag="JN078_002679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system toxin RatA"
                     /protein_id="HAY9041833.1"
                     /translation="MILFVGFLLMEIVMPQISRTALVPYSAEQMYQLVNDVQSYPQFL
                     PGCTGSRILESTPGQMTAAVDVSKAGISKTFTTRNQLTSNQSILMNLVDGPFKKLIGG
                     WKFTPLSQEACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKEVYSAR"
     gene            11597..12079
                     /gene="smpB"
                     /locus_tag="JN078_002680"
     CDS             11597..12079
                     /gene="smpB"
                     /locus_tag="JN078_002680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HAY9041834.1"
                     /translation="MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSL
                     RAGKANISDSYVLLRDGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYG
                     RVNREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR
                     "
     gene            12294..12656
                     /gene="ssrA"
                     /locus_tag="JN078_002681"
     tmRNA           12294..12656
                     /gene="ssrA"
                     /locus_tag="JN078_002681"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(12817..15120)
                     /locus_tag="JN078_002682"
                     /pseudo
     CDS             complement(12817..15120)
                     /locus_tag="JN078_002682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311542.2"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
BASE COUNT         3708 a         4061 c         3545 g         3806 t
ORIGIN      
        1 gttgatgaac aattccgatg cccgaaaaac gtcggcgtta ctatttcttg atggcgataa
       61 tttcaaatat atcaatgata cctggggtca tgcgacgggc gatagggtct tgattgaaat
      121 cgcaaaacgg ttagctgaat ttggcgggct gcgacataaa gcataccgcc tgggcggcga
      181 tgaattcgct atggtgctct atgatgtaca gtcggaatct gaagtgcaac agatatgctc
      241 agcactgaca caaatcttta atctcccgtt tgatcttcat aatggccatc agaccaccat
      301 gacattaagc attggttacg cgatgaccat tgagcacgcc tctgcggaaa aattacaaga
      361 gcttgccgat cacaatatgt atcaggccaa acaccagcgt gccgaaaagc tggtgagata
      421 acaaggatat atcgatatga taaagcacct ggtagccccc ctgattttca cctcactaat
      481 actgactggc tgccagtccc ctcagggaaa gtttactcct gagcaagtcg ccgctatgca
      541 atcttatgga tttactgaat ccgccggcga ctggtcgctg ggcttatcag atgccattct
      601 gttcgcaaaa aatgactaca aattgctccc ggaaagccag caacagatcc aaaccatggc
      661 agccaaattg gcctcgacag ggctaacaca tgcccgtatg gatggacaca ccgataacta
      721 tggtgaagac agttacaacg aaggcttatc attgaaacgg gcgaatgtcg tggccgatgc
      781 atgggctatt ggtggacaaa ttccacgcag caatctcacc acacagggtt taggaaaaaa
      841 atatcccata gccagtaaca agaccgccca gggccgcgcc gagaaccgcc gcgtcgcagt
      901 ggtgattaca accccttaaa acacgagcaa acagacaaaa aaagggccag ccaattggcc
      961 agcccttctt aacaggatgt cgcttaagcg aaatcttagt taagacgctc tttgatacga
     1021 gcagccttac cagtacgctc acgcaggtag tacagtttag ctttacgaac agcaccacga
     1081 cgtttgacag aaatgctgtc aactaccgga gagtgagtct ggaagacacg ctcaacgcct
     1141 tcgccgttgg aaattttacg aacagtgaat gcagagtgca gaccgcggtt acgaatagcg
     1201 ataaccacgc cctcgaatgc ctgcagacgt tttttggaac cttcaacaac ccatactttc
     1261 acttccacgg tatcacccgg acggaaggaa ggtacgtcct gcttcatctg ctcttgttca
     1321 agttgcttaa taatgttgct cataatttaa tctcttatcc tgggtaaact gatatctcgg
     1381 gggcttacgc catcccatca tgtttatgtt gctgttgtgc gtgttccgtt ttgaactccg
     1441 ccagcaacct tgcttgctct tcagtcagag ccaggttttc cagaagttca ggtcttctaa
     1501 gccaggtacg gcccagcgac tgtttcaaac gccagcgacg tatctcggca tggttgcccg
     1561 acagtaacac tggcggaact tccatccctt ctaacacctc aggccgcgta tagtgcgggc
     1621 aatccagcaa tccttcagca aaggaatctt ccgttgccga ggcttcatgt cccagtaccc
     1681 ccggaataaa ccgggaaacg gagtcaatca gcgtcattgc tggtaactca ccaccactga
     1741 gaacgtaatc gccgattgac cattcttcgt caatttcggt ttggatcacg cgctcatcta
     1801 taccttcgta gcgaccgcac accagaatca atttttgatt cgttgccaat tcgctgacgc
     1861 ccgcttgatc aagcttgcgt ccctgtggtg acagataaat cacctttgcg ccttcacccg
     1921 ccgcggcttt tgctgcatga atggcgtccc gcaagggttg caccatcatt aacatccccg
     1981 gtccgccgcc gtaaggacga tcgtccacgg tacggtgccg gtcatgcgtg aagtcgcgag
     2041 gactccagct ctggatgctc agcaggccat ttttaactgc ccggccagtt accccgtaat
     2101 cggtaattgc gcggaacatt tcaggaaaca ggctaattat gccaatccac atagcgccgt
     2161 cttttaccgt ttatccggtg gtttaaaaac caggatccca atctacttcg attgaacgag
     2221 tagtgagatc gactttcttg ataacctgcc catcgaggaa cggtacgaga cgttccttga
     2281 taccaaacgc atctttcagg tttgccttaa tgacgagaac gtcattagat ccggtttcca
     2341 tcatatcgac gactttaccg agatcgtagc cttcagtggt tactacctgg cagcccatca
     2401 ggtctttcca gtagtagtca ccctcttcaa gctgaggcaa ctgcgatgaa tccacgacaa
     2461 tttcacaatt cgtcagcagg ttcgccgcat cacgatcgtc aacgcctttc agcttgatga
     2521 tcatgtcctg attgtggtgc ttccagcttt ccagctggac ttgctgccac tgacccgcct
     2581 tctggataaa ccagggctga tagtcaaaaa tgctttcggc gtcttcggtg gaagaaaaca
     2641 ctctgagcca cccacgaata ccgtaagacg aacccatttt tcccaaaacg atgggatcaa
     2701 caggtgcttg cgcggtgagt tgtttgctca tcatgaccac cgtgacagat taagctgctt
     2761 tgtttacttc tttgatcagc gcagcaacgc gatcagaaat agttgcgccc tggccaaccc
     2821 agtgagcgat gcgatccaga tccaggcgag tgccttcttc tttttcgcta gcgattgggt
     2881 tgaagaaacc aacgcgctcg atgaagcgac cgttgcgtgc attacggctg tcagcgacaa
     2941 caacctggta gaacggacgc tttttagcgc cgtgacgtgc taaacgaata gttaccataa
     3001 catcctcttg tgtgaataaa acaaccggac cccatcgagg aacggagtcc ggtgtcatat
     3061 taaaagcccg aaaattttac tgatttctgg agaaaatgca atcagcagtt aataactctg
     3121 tcgcataagg tcatttagcg accaggaaat cccggcggca tcatcccctt catgcttctc
     3181 atcatcttcg ccattccgcc cttcttcatt ttcttcatca tgcgctgcat gtcgtcgaac
     3241 tgtttcagaa gacggttaac gtcctgcacc tgcataccgc aaccggcagc aatacggcgt
     3301 ttacgcgaac ctttgatgat ttctggctta gcgcgctctt tcatcgtcat cgagttgatg
     3361 atggcttcca tacgcaccag cactttatcg tccatctgtg acttgacgtt atccgggatc
     3421 tgccccatgc ccggcagctt gcccatcagg ctggccatgc cgcccatatt tttcatctgg
     3481 cgcagctgct caagaaagtc gttgagatcg aagccgtcac cttttttcag cttgctggct
     3541 aatttctctg cctgcgcgcg gtcaactttg ctttcgatat cttcgatcag cgacagtacg
     3601 tcgcccatgc cgagaatacg cgacgcgatg cggtccggat ggaacggctc cagcgcctca
     3661 gttttctcgc caacaccgag gaacttgatc ggtttgccag tgatgtgacg aatagagagc
     3721 gccgcaccgc cgcgggcatc gccgtccact ttggtcaaca ctacgccggt aagcggtaac
     3781 gcttcattga atgcttttgc cgtattggcc gcatcctgac cggtcatggc gtcaaccaca
     3841 aacagggttt caaccgggtt aatcgacgca tggacttgtt tgatctcgtc catcatcgct
     3901 tcgtcaacgt gcagacgacc agcggtatcc accagcagca cgtcgtagaa tttcagtttg
     3961 gcttctttca gcgccgcgtt aacgatatct accggcttct gaccaacatc agaagggaag
     4021 aaatcaacgc ccacctgctc tgccagcgtc tcaagctgtt tgattgccgc cgggcgataa
     4081 acgtcggcag aaaccaccag cactttcttc ttgtgcttct cgcgcaggaa cttaccgagt
     4141 ttaccaacgc tggttgtttt accggcacct tgcaggcccg ccatcagcac gaccgcaggc
     4201 ggttgcgccg ccaggttcag ggtctggttc tcttcgccca tcgccgcaac cagttcgtta
     4261 cggacgattt tgacgaactc ctgccccggc gtcaggctct tattaacttc atgaccaacc
     4321 gctttctctt ttacgcgatt gataaactca cgcactaccg gcagagcgac atccgcctcc
     4381 agcagcgcca tgcgcacttc gcgcagcgta tcttttacgt tgtcttcagt taggcgtcca
     4441 cggccactga tattgcgcag cgtgcgcgac aaacgatcgg ttaaattatc aaacattgtc
     4501 tctcgcctgg ggtggaaacg gttggccgca atcgcgacac atcatcagta ttttgccgca
     4561 gtataacatg aaggcgtctt tgttgttatg caacggttgg agcagcgttc acctgacgct
     4621 atactgcttc tctttcttat tgctcaaact gttgacatca ctatgcccgt ttttgctctg
     4681 ctcgcgcttg tcgcctactc cgtcagtctt gcgctgattg ttcccggtct gctgcaaaaa
     4741 aacggcggct ggcggcgcat ggctattatt tctgcggtca ttgcgctggt ctgccacgca
     4801 atcgctctgg aagcccgcat cctgcccgac ggtgatagcg gacaaaacct cagcctgctg
     4861 aacgttggtt cattggtcag tttgatgatc tgtacggtaa tgaccattgt ggcttctcgc
     4921 aatcgtggct ggttgctgct acccattgtc tatgcctttg cgcttatcaa cctggcgctg
     4981 gcgaccttca tgcccaatga atacatcacc catctggaag caacgcctgg gatgctggtg
     5041 cacattggct tatcgctctt ttcctatgcc acgctaatta tcgccgccct gtacgcgctg
     5101 caactggcgt ggattgatta ccaactgaag aacaagaagc tggcatttaa ccaggaaatg
     5161 ccgccattga tgagtatcga gcgtaaaatg ttccacatca cgcagattgg cgtggtgctg
     5221 ctaacgctca cgctttgcac tggcctgttc tacatgcaca acctatttag catggaaaat
     5281 atcgacaagg ctgtgctctc tatcgtggcg tggtttgtct atattgtgct gctgtgggga
     5341 cattaccatg aaggatggcg tggacgccgc gtcgtctggt ttaacgttgc gggcgcggta
     5401 attctgacac tggcctactt cggcagccga attgtccagc agttaatcag ctaaacccag
     5461 aaaaggagtt tcccctggaa cacatttcta ctactacgtt gatcattatt ctgatcatca
     5521 tggtggtcat ttcagcctat ttttccgggt ccgaaaccgg aatgatgacc ctcaaccgct
     5581 atcgtctgcg acatatggcg aaacagggta atcgctcggc caaacgcgtc gaaaaattgc
     5641 tgcgtaagcc agaccgcctg ataagcctgg tgttaatcgg caataacctg gtcaatattc
     5701 ttgcctccgc gctcggcact attgttggga tgcgtttgta cggcgatgcg ggcgtggcaa
     5761 ttgcgactgg tgtgctgact tttgtcgtac tggtatttgc tgaggtattg ccgaaaacca
     5821 ttgccgcgct gtacccggaa aaagtcgctt atccgagtag ttttctgctg gctccgctgc
     5881 aaattttgat gatgccgctg gtctggttgc tgaatgctat cacccgtatg ctgatgcgca
     5941 tgatgggtat caaaaccgat atcgtggtta gcggctcttt gagcaaagaa gagttgcgca
     6001 ctatcgtgca cgaatcacgc tcacaaattt cccgtcgcaa tcaggatatg ctgctgtcgg
     6061 tgctcgatct ggaaaaaatg accgttgatg acatcatggt gccgcgcagt gaaattatcg
     6121 gtattgatat caacgatgac tggaaatcga ttctgcgcca actctcccac tcacctcacg
     6181 ggcgcatcgt gctctaccgt gattcgctgg acgacgccat cagtatgctg cgagtacgtg
     6241 aagcctggcg attgatgtcg gagaaaaaag agttcaccaa agaaaccatg ctgcgcgccg
     6301 cggacgagat ctattttgtg ccggaaggta cgccgctcag cacgcagttg gtaaagtttc
     6361 agcgcaacaa aaagaaagtc ggcctggtcg tcaacgagta tggagacatt caggggctgg
     6421 tgacggttga agatattctg gaagagattg tcggcgattt cactacgtcg atgtcgccaa
     6481 cacttgccga agaggtcacg ccgcaaaacg acggttcggt gattatcgat ggcaccgcca
     6541 acgtgcggga aatcaacaaa gcctttaact ggcatctacc ggaagatgat gcccgcacgg
     6601 ttaatggcgt cattcttgag gcactggaag agatccctgt cgcaggcacc cgcgtgcgta
     6661 ttggcgagta cgatatagat attctcgacg tacaggacaa tatgattaag caggtaaaag
     6721 tttttcctgt gaaaccgctg cgcgagagtg tggcggagta acgaaaacgg ccctgcattc
     6781 gcatgcaggg ccgtgaatta ttacgaaaac agaaattacg cttttgcttt cgctacagtt
     6841 accatcgccg cacgaatcgt acgaccattc agcgtataac ccttctgcat aatgcccagt
     6901 acgttacctg gcgcaacgtc atcagattcc accattgcga tagcctgatg cacattcggg
     6961 tccagcggca cgttagtttc ggcgatcact tcaacaccaa acttacgcac aacatccagc
     7021 atcgacttca gcgtcagctc aatgccttca accatcgcag acatatccgg gttagcttta
     7081 tcagccactt ccagcgcacg atccaggcta tcaatcaccg gcagcaattc gttgatgaat
     7141 ttctccagcg caaatttgtg ggctttttca atatccagtt cagtacgtcg acgcaggttt
     7201 tccatttcgg cttttacacg caaaatgccg tcacgttcac gggtctgggc ttcagccagc
     7261 tgagcttcga gattcgcaat tttttcatcg cgcggatcca cctgctcagc agaagcttct
     7321 ggctcaactg cctcaatctc ttcgtgctga tccatgataa tttcttccgg ggcttgcccc
     7381 tcaggcgttt tctgttcttt actactcatg aatttctccg cgtttttttc gcattcatct
     7441 cgctaacttc gcttattatg gggatcagtt tcagggtttc aagggaagca ctcacattgt
     7501 catcaatctt cgcaacaagg acctcggaaa aatgaataat catttcaagt gtattggcat
     7561 tgtgggacac ccacggcacc ccactgcact gacaacacat gaaatgctct accgctggct
     7621 gtgcaaaaaa ggttacgagg tcatcgttga gcaacaaatc gctcacgaac tgcaactgaa
     7681 gaatgtgaaa actggcacgc tcgcggagat tgggcaacta gctgatctcg cggtagtcgt
     7741 tggtggcgac ggtaatatgc tgggcgcggc acgcacactc gcccgttacg atattaaagt
     7801 tattggaatc aaccgtggca acctgggttt cctgactgac cttgaccccg ataacgccca
     7861 gcaacagtta gccgatgtac tggaaggcca ctacatcagc gagaaacgtt ttttgctgga
     7921 agcgcaagtc tgtcagcaag attgccagaa acgcatcagc accgcgataa atgaagtggt
     7981 gcttcatcca ggcaaagtgg cacatatgat tgagttcgaa gtgtatatcg acgagatctt
     8041 tgcgttttct cagcgatctg atggactaat tatttcgacg ccaacaggct ccaccgccta
     8101 ttccctctct gcaggcggtc ctattctgac cccctctctg gatgcgatta ccctggtgcc
     8161 catgttcccg catacgttgt cagcacgacc actggtcata aacagcagca gcacgatccg
     8221 tctgcgtttt tcgcatcgcc gtaacgacct ggaaatcagt tgcgacagcc agatagcact
     8281 gccgattcag gaaggtgaag atgtcctgat tcgtcgctgt gattaccatc tgaatctgat
     8341 tcatccgaaa gattacagtt atttcaacac attaagcacc aagctcggct ggtcaaaaaa
     8401 attattctaa ttttacgcca gcctctttac tgtatataaa accagtttat actgtacgca
     8461 ataacagtaa tggtttttca tacaggaaaa cgactatgtt ggcacaactg accatcagca
     8521 actttgctat cgttcgtgag cttgagattg attttcatag cggcatgacc gtaataactg
     8581 gcgagaccgg cgcgggtaaa tctattgcaa tagatgccct cggtctttgt ctcggtggtc
     8641 gcgctgaagc cgacatggtg cgtaccggcg ctgctcgcgc tgacctgtgc gcccgttttt
     8701 ctctgaaaga tacgccagcg gctctgcgct ggctggaaga aaatcagctt gaagacgggc
     8761 atgaatgttt gcttcgtcgc gtaatcagca gcgatggtcg ctcccgtggt ttcatcaacg
     8821 gtacagctgt tcctctgtca caactgcgcg aactgggtca gttgctgatt cagatccatg
     8881 gtcagcacgc tcatcaatta ctcaccaaac ctgagcacca aaaattcctg cttgatggct
     8941 atgccaatga aacctctcta ctgcaggaaa tgaccgcacg ttatcagttg tggcatcaaa
     9001 gctgccgtga cctcgcgcat catcaacagt taagtcagga acgcgccgcc cgtgcggaac
     9061 tgctgcaata ccaattaaaa gaacttaacg aatttaatcc gcagcccgga gagtttgaac
     9121 aaatcgacga agagtacaaa cgtctggcga acagcggtca attgctgacc accagccaga
     9181 atgcattggc attaatggcc tacggtgaag acgcaaacct gcaaagtcag ctttacacgg
     9241 ctaaacaact ggtgagcgaa ttgattggca tggacagcaa actgtccggc gtacttgata
     9301 tgctggaaga agctaccatc cagattgctg aagccagcga tgaactgcgc cactactgcg
     9361 atcgtctgga tctcgatccc aaccgactat ttgaacttga acagcgcatc tcaaaacaga
     9421 tttcgctggc acgtaaacat cacgtcagcc ctgaggcatt gccacagtat taccagtcgc
     9481 tactggaaga acagcagcaa ctggacgatc aggccgactc acaagaaacg cttgcgctgg
     9541 cggtaacgaa acatcatcag caggcactgg aaatcgcgcg cgcattacac caacaacgcc
     9601 agcaatatgc agaagaactt gcacagctga tcaccgacag tatgcatgcg ctctcaatgc
     9661 cgcatgggca gtttacgatc gatgttaaat ttgacgagca tcacctgggc gctgacggtg
     9721 ccgatcgtat tgagtttcgg gtaaccacca acccaggtca gccaatgcag cctattgcca
     9781 aagtcgcatc cggtggtgaa ttgtcccgca tcgcactggc aacccaggtc atcacggcgc
     9841 gtaaaatgga aaccccggca ctgatttttg atgaagtgga tgtagggatt agcggtccaa
     9901 cagcggcagt tgtcggcaaa ctgctgcgtc aactcggcga atcaactcag gtgatgtgtg
     9961 ttacccacct gccacaagtc gcgggatgtg gtcatcaaca ctattttgtc agcaaagaaa
    10021 ccgatggtgc gatgacagaa acgcatatgc aatccctgaa taaaaaagcg cggttacaag
    10081 agctggcgcg cctgcttggt ggcagtgaag tcacacgtaa tacactggcg aatgcgaaag
    10141 aactgcttgc agcgtaaact tttttcctgc ttcacggtca gagtaaacag caaaacgccg
    10201 taagaccgga aagcaaaagg ttttaaagtg atgaaaggtc tattatcatc ggcatattac
    10261 agatgagcca cgtactgcta gggcccgaaa aggaatcaaa tcactatgcg ctgtaaaacg
    10321 ctgactgctg cagcagcagt actattgatg ttgaccgcag gctgttccac tctggagcga
    10381 gtggtttacc gtcctgacat caaccagggg aactatctga ccgctaacga cgtatccaaa
    10441 atacgtgttg gcatgacgca acaacaagtt gcgtacgcat tgggtacacc gctgatgtcc
    10501 gatccatttg gtacgaatac ctggttctat gtcttccgcc agcaaccagg tcatgaaggt
    10561 gtaacgcagc aaacgctgac gctgaccttt aacagtagcg gtgtgttgac caatattgat
    10621 aacaaacctg cgctgagtgg taactaataa taaagttgct ctcaaagacg ttaaaaaagg
    10681 tgctcaatga gcaccttttt tctgtctgtt atttattcgc tgatttttct gctcgttgcc
    10741 tgcgaagctc tttcggatcg gcaatgagag ggcgataaat ctccacccga tcgccatcat
    10801 gcacactatc gcttagtttt gccggacggc tgtaaatgcc gactttgttt ttagttaaat
    10861 cgatatcggt acgcaattcc agcaagccac tggcgcgaat agcttcttca accgtcgcgc
    10921 cctcctgcag cgtcacgcgc tgcaggtact gcttctcagg tagcgcataa gccacctcaa
    10981 cggcaatttt acctggcact gtaaacctct ttcgcacgaa ccgtaaaagc ctggaccata
    11041 ttagacgcca gctctttaaa cacgcgacca aaggcgagtt caatcaactt attggtaaac
    11101 tcaaagtcga gatgaaactc gatacgacac gcctcctggc tcagcggcgt aaacttccat
    11161 ccaccaatca atttcttgaa cggcccatcc accagattca taagaatact ttggttactg
    11221 gtcaactggt tgcgggtagt aaacgttttg ctgatcccag ccttagagac atctaccgcc
    11281 gcagtcatct gcccaggagt ggactccaga atccgacttc cggtacaacc cggcaaaaac
    11341 tgaggataag actgaacgtc attcactaac tgatacattt gctccgcgct gtagggtacc
    11401 agtgcggtcc ggctaatctg aggcataact atttccatca acaaaaatcc aacaaataat
    11461 atcatttatc ctgctgtaaa aaaaacgcta tcccggcgct gggtaacatc gggttcatgc
    11521 taagatagag ccttgtcccc cgcaggattg atatggggtg ttttcgattt cagattaccg
    11581 atgattcacg acgcttatga cgaagaaaaa agcacataaa cctggttcag cgaccatcgc
    11641 gcttaacaag cgcgcccgtc acgaatactt tatcgaagaa gagttcgaag cgggacttgc
    11701 cctgcaaggc tgggaagtta aatccctgcg cgcaggaaaa gccaatatca gcgacagcta
    11761 cgtccttctg cgtgacggag aggcatttct gtttggcgct aacatcacgc caatggccgt
    11821 ggcctccacg catgtggtgt gcgatcctac ccgtacccgc aagttacttc tcaaccagcg
    11881 cgaactggac tcattgtacg gtcgcgtcaa tcgagaaggc tataccgtag tggcgctctc
    11941 cctgtactgg aaaaatgcct ggtgcaaagt gaaaatcggc gtcgccaaag gtaaaaaaca
    12001 gcacgataaa cgttcagata tcaaagaacg cgaatggcag gtggataaag cacgtatcat
    12061 gaaaaacgcc caccgttaaa cctgcactcc aattattgac cagttcctca ccgcgcctcc
    12121 ctctccggcg gcgcgaatga acatcttatt ggctatcaca tccgacacaa atgttgccat
    12181 cccattgctt aatcgaataa aaatcaggct acatgggtgc taaatcttta acgataacgc
    12241 cattgaggct ggtcatggcg ctcataaatc tggtatactt gccgttacac attggggctg
    12301 attctggatt cgacgggatt tgcgaaaccc aaggtgcatg ccgaggggcg gttggcctcg
    12361 taaaaagccg caaaaaatag tcgcaaacga cgaaaactac gctttagcag cttaataacc
    12421 tgcttagagc cctctctccc tagcctccgc tcttaggacg gggatcaaga gaggtcaaac
    12481 ccaaaagaga tcgcgtggaa gccctgcctg gggttgaagc gttaaaactt aatcaggcta
    12541 gtttgttagt ggcgtgtccg tccgcagctg gcaagcgaat gtaaagactg actaagcatg
    12601 tagtaccgag gacgtaggaa tttcggacgc gggttcaact cccgccagct ccaccaatca
    12661 tgattggacg gtataaggac aacaccaata aaaacaggag gttagcagtc tcagcaggac
    12721 accgaccaga cggtgaagag acataaaagg atacgcaaag gagccgcggc tcctggtgac
    12781 atgaaagccc acagatgtgg gctttttcgt tgatggtcag aacgaccagt tcacaccagc
    12841 taccccgttc cacggggatt ccacaccggc accatggcta taccccaccc caagatgccc
    12901 gcttaacgta ctgctgaatg aggctttaat acctgcctgg tatattccac gtctgcccga
    12961 caaatcattg acgaaattac cgtcactatt cactttcacc cggttatcat cgacaaattc
    13021 tttgcgcaca gccgccttca gccacggctc aacttccata ccgttcccca gacgcatgtt
    13081 gtaactcagc gttgcaccca gttcacgata taaacctgcg ggtatcgact gatttcgatt
    13141 ccatgccatt ggataaatga tattcagggt tatcagcggt gaacccccgt taacgatgca
    13201 tacggcgtca ggttccagtt accatcggta aatcgcatcc cggtttcaat gtgaccgccc
    13261 agcccgttgc tgcgataact gccgttggtg gctccaccgc tgccaaccgt ggagtcgcga
    13321 gcttcggtac ctgctaatac caataaatta ccgccatttt ccagcaacat attggtcgct
    13381 aaattgccgg aaatggaaaa agtgccgtac tggtgagtac cgctgatttc aataccgtta
    13441 gccgtgctcg tctggagagc ggcaccgctg ttctggacga tatctgtcgc tttgccatta
    13501 tcgttaactg tcagcgtacc gccttcattg atctttgttt ttattgcctc tccgttagct
    13561 gaaactgttt gtattccgcc gtcgttaatc gttgtctcat tcgccacccc ctcgacgatt
    13621 tgttcgccgc cggtgagcgt cgtgcctgtc gcagtggctt ttgttttgac gatctcccgt
    13681 ccgcccgtat tgacctgtgt tttgtcagaa gaggtgtctg actccacggt taacacgccg
    13741 ccatttgcca gcaggatatt gttcgccgca ccctgctcga tgctgaacgc gacgccatcc
    13801 gcgcgtgttc ctgtgacccg cgtcgccctg gtggttgcaa ccaaagcgcc ctggctactc
    13861 tgctgtatcc ccgttgcgct gcctttctcc cgcacatcga gtgtgccgcc gtcattaagc
    13921 accgagtttt cagccagacc gccctcatta actacctgtg aacccccatt aataatggaa
    13981 ccttccgctg tcccgtttgc cataatttgt tgtaggccag agacgatatc ggtattgatt
    14041 gccttaccat aattctgaac ggtttgcgtg ccaccattga tgtgtgtttt ctctgttgac
    14101 ccaccatcaa caatttgttc accactttcg atatttgcct cagtggctaa tccatatacc
    14161 gtttgcttgc cacctttgat atttgcttta tcagaagtgg cactggcata tattgtttgg
    14221 gtgccagcac tattgagtac agtgccaaca tcttttccat aaacatccat tttgccgttg
    14281 gcattaataa tcgtatcaac tgcccgggaa ccagtgacga ctgttaatga gccagcgttt
    14341 tccagcacta catttttagc ttctgaattc ctgatgtaga aagcatcacc ataactgttg
    14401 gttcctttga taagggttcc ggaagttgtg gaagcaatta atgcgccgcc ggattgttgc
    14461 tcaacatgct tagcctcacc accgtcctga acctccagaa cgccaccatt attaagtctg
    14521 gtggtatctg ttttagcctc cttctggaca atcagcttac cgccagcatc aacggtagta
    14581 tttttcgccg aggttttagc cactaccgtc agttcgccgg tattttccag cacaacataa
    14641 ttagcctccc ctccgggtaa tagtgaagtg agagagcttg ttgtatcctt cgatatcagt
    14701 ccctgcgccc gtgttggcaa ctaaagcact gcccgtctcc tggttaaccc catgtgctat
    14761 accgccggta tagacaatca gcgagcctcc ggcgctaata ttgctgccag ttgccgtacc
    14821 atctttctca acaacctgcc ggctcccggt ggaaatattt gtcgtgtcag ctttcccgcc
    14881 gctcttgata ttttgtgttc cgctgttgat attggtaccc gtggcaatac catgattatt
    14941 aatattctgt gtaccaccat tgattatggt attggtcgcg tttccggtaa catccattac
    15001 cccgccgtta tctattcggg tcgcatcagc tttagcattc gttaaaactg acattgttcc
    15061 tttatcttta ataatcgtct tatttgccga accatatgcg tttatgtcta aatgaccacc
//
LOCUS       DADMJB010000100        14938 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.100, whole genome shotgun sequence.
ACCESSION   DADMJB010000100 DADMJB010000000
VERSION     DADMJB010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14938
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.100"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..452
                     /locus_tag="JN078_002683"
     CDS             <1..452
                     /locus_tag="JN078_002683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312811.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF945 family protein"
                     /protein_id="HAY9041835.1"
                     /translation="QEVNAALFKEYLPLLQQSEPTIKQPVRWKNALGELNANLDISIA
                     DPAKSSSSTNKDIKSLNFDVKLPLNVVTETAKQLNLSEGMDAEKAQKRADKQISGMMT
                     LGQMFQLITIDNNTASLQLRYTPGKVVFNGQEMSEEEFMSRAGRFVH"
     gene            complement(493..1425)
                     /locus_tag="JN078_002684"
     CDS             complement(493..1425)
                     /locus_tag="JN078_002684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HAY9041836.1"
                     /translation="MANLLNKFIMTRILAAITLLLSIVLTILVTIFCSVPIIIAGIVK
                     LLLPVPVIWRKVSRFCDFMMYCWCEGLAVLLHLNPHLQWEVHGLEGLSKKNWYLLICN
                     HRSWADIVVLCVLFRKHIPMNKYFLKQQLAWVPFLGLACWALDMPFMKRYSRAYLLRH
                     PERRGKDVETTRRSCEKFRLHPTTIVNFVEGSRFTQEKHQQTHSTFQNLLPPKAAGIA
                     MALNVLGKQFDKLLNVTLCYPDNNRQPFFDMLSGKLTRIVVHVDLQPIADELHGDYIN
                     DKSFKRHFQQWLNSLWQEKDRLLTSLMSSQRQDK"
     gene            complement(1545..1787)
                     /locus_tag="JN078_002685"
     CDS             complement(1545..1787)
                     /locus_tag="JN078_002685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041837.1"
                     /translation="MSVPVYQIMGKGCHRQDKNMSFSPLFVKIFCRSSGSLANRHVDN
                     FVHKLFTSLLIYYHAFYSMMFVFVFHVVKNKAIPNN"
     gene            1789..4575
                     /gene="polA"
                     /locus_tag="JN078_002686"
     CDS             1789..4575
                     /gene="polA"
                     /locus_tag="JN078_002686"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HAY9041838.1"
                     /translation="MVQIPQNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLN
                     MLRSLIMQYKPTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAM
                     GLPLLAVSGVEADDVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTIL
                     GPEEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEP
                     EKIAGLSFRGAKTMAAKLQQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELL
                     GLFKKYEFKRWTADVEAGKWLQAKGAKPAAKPQETSVADEAPEVTATVISYDNYVTIL
                     DEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDA
                     PDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILN
                     SVAGRHDMDSLAERWLKHKTITFEEIAGKGKNPLTFNQIALEEAGRYAAEDADVTLQL
                     HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL
                     EKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLP
                     KVILEYRGLAKLKSTYTDKLPLMINPKTGRLHTSYHQAVTATGRLSSTDPNLQNIPVR
                     NEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAE
                     VFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGV
                     LEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADII
                     KRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPL
                     LVEVGSGENWDQAH"
     gene            complement(4957..5589)
                     /locus_tag="JN078_002687"
     CDS             complement(4957..5589)
                     /locus_tag="JN078_002687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418301.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HAY9041839.1"
                     /translation="MTNLNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALN
                     TLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY
                     LEKRHSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLN
                     MVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQPVEETQDGE"
     gene            6171..6680
                     /gene="yihI"
                     /locus_tag="JN078_002688"
     CDS             6171..6680
                     /gene="yihI"
                     /locus_tag="JN078_002688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Der GTPase-activating protein YihI"
                     /protein_id="HAY9041840.1"
                     /translation="MKPSSSNSRSKGHAKARRKTREELDQEARDRKRQKKRRGHAPGS
                     RAAGGNTTSGSKGQNAPKDPRIGSKTPIPLGVTEKVTKQHKPKSEKPMLSPQAELELL
                     ETDERLDALLERLEAGETLSAEEQSWVDAKLDRIDELMQKLGLSYDDDEEEEEDEKQE
                     DMMRLLRGN"
     gene            6869..8242
                     /gene="hemN"
                     /locus_tag="JN078_002689"
     CDS             6869..8242
                     /gene="hemN"
                     /locus_tag="JN078_002689"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HAY9041841.1"
                     /translation="MSVQQIDWDLALIQKYNYSGPRYTSYPTALEFSEDFGEQAFLQA
                     VARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAG
                     RHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLR
                     AEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQT
                     PESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAF
                     LTQSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGD
                     CYAQNQKELKQYYQQVDEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYAPIEKQW
                     DLHFADYFAEDLKLLAPLAKDGLVDVDEKGIQVTAKGRLLIRNICMCFDTYLRQKARM
                     QQFSRVI"
     gene            complement(8432..8542)
                     /gene="yshB"
                     /locus_tag="JN078_002690"
     CDS             complement(8432..8542)
                     /gene="yshB"
                     /locus_tag="JN078_002690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YshB family small membrane protein"
                     /protein_id="HAY9041842.1"
                     /translation="MLESIINLVSSGAVDSHTPQTAVAAVLCAAMIGLFS"
     gene            complement(8653..10062)
                     /gene="glnG"
                     /locus_tag="JN078_002691"
     CDS             complement(8653..10062)
                     /gene="glnG"
                     /locus_tag="JN078_002691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(I)"
                     /protein_id="HAY9041843.1"
                     /translation="MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALA
                     SKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYL
                     PKPFDIDEAVALVERAISHYQEQQQPRNIQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
                     SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFT
                     GANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI
                     IAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELG
                     VEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAE
                     STSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAAR
                     LLGWGRNTLTRKLKELGME"
     gene            complement(10074..11123)
                     /gene="glnL"
                     /locus_tag="JN078_002692"
     CDS             complement(10074..11123)
                     /gene="glnL"
                     /locus_tag="JN078_002692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(II)"
                     /protein_id="HAY9041844.1"
                     /translation="MATGTQPDAGQILNSLINSILLIDDNLEIHYANPAAQQLLAQSS
                     RKLFGTPLPELLSYFSLNIELMQESLEAGQGFTDNEVTLVIDGRSHILSVTAQRMPDG
                     MILLEMAPMDNQRRLSQEQLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLSKALP
                     DPSLLEYTKVIIEQADRLRNLVDRLLGPQLPGTRVTESIHKVAERVVTLVSMELPDNV
                     RLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGER
                     YRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTS
                     WPGHTEFSVYLPIRK"
     gene            complement(11297..12706)
                     /gene="glnA"
                     /locus_tag="JN078_002693"
     CDS             complement(11297..12706)
                     /gene="glnA"
                     /locus_tag="JN078_002693"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--ammonia ligase"
                     /protein_id="HAY9041845.1"
                     /translation="MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFF
                     EEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYD
                     RDPRSIAKRAEDYLRSTGIADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEGAWN
                     SSTQYEGGNKGHRPAVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAG
                     QNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLS
                     KNGVNLFAGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLA
                     YSARNRSASIRIPVVSSPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEA
                     MDKNLYDLPPEEAKEIPQVAGSLEEALNELDLDREFLKAGGVFTDEAIDAYIALRREE
                     DDRVRMTPHPVEFELYYSV"
     gene            13079..14902
                     /gene="typA"
                     /locus_tag="JN078_002694"
     CDS             13079..14902
                     /gene="typA"
                     /locus_tag="JN078_002694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000570679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-dependent GTPase TypA"
                     /protein_id="HAY9041846.1"
                     /translation="MIEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMD
                     SNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAF
                     DGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF
                     PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYV
                     GVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAI
                     TGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDR
                     LNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREI
                     DGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIG
                     FRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNGQGKAVAFALFGLQDRG
                     KLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPPIRMTLE
                     QALEFIDDDELVEVTPTSIRIRKRHLTENDRRRANRAPKDY"
BASE COUNT         3863 a         3746 c         3850 g         3479 t
ORIGIN      
        1 tgcaagaagt gaatgctgca ttgttcaaag agtatttacc gttattacaa caaagtgagc
       61 cgaccattaa acaaccggta agatggaaga acgcactcgg cgaactaaat gccaatctgg
      121 atatcagtat tgccgaccca gccaaatctt catcatccac aaacaaagat atcaaatcgc
      181 tcaattttga tgtgaagtta ccgcttaatg tcgtcacaga aaccgcaaaa cagcttaatt
      241 tatctgaagg aatggatgcg gaaaaagcgc aaaagcgggc tgataaacaa atcagcggga
      301 tgatgacctt aggtcagatg tttcagttaa tcacgattga caacaatacc gcctcgctgc
      361 aactgcgtta tacaccgggt aaagttgttt ttaacggaca ggagatgagc gaagaagaat
      421 ttatgtctcg tgccggacgt tttgttcatt aaaatactca ctcgcctctg ctcattcaga
      481 ggcgagcaaa atttacttgt cctgccgctg tgatgacatc aacgacgtca gaagtcggtc
      541 tttttcctgc cacagtgagt tcagccattg ctgaaaatgg cgcttaaagc ttttgtcatt
      601 gatgtagtcg ccatgtaact catcggcaat aggctgtaaa tccacatgaa cgacaattcg
      661 cgtcagttta ccgcttaaca tatcgaagaa cggctgacgg ttattgtccg gataacacag
      721 cgtaacatta agcagtttat cgaattgttt acccagtaca tttagcgcca tcgcaatgcc
      781 tgccgccttt ggtggcaaca agttttgaaa agtggagtgg gtttgctgat gtttttcttg
      841 cgtgaaacgg gagccttcaa cgaaattgac aatggtggtg ggatgcaggc gaaacttttc
      901 acaagaacgc cgagtggttt caacatcttt accacgtcgc tccggatgac gtaataaata
      961 agcgcgggaa taacgcttca taaacggcat atccagcgcc cagcacgcca ggccaagaaa
     1021 tggcacccag gccagctgtt gcttgaggaa atatttattc atcggaatgt gcttacgaaa
     1081 cagcacgcac agtacgacaa tatctgccca actacggtgg ttacaaataa gcagatacca
     1141 gttcttctta cttaaccctt ccagcccgtg aacttcccat tgcaggtgtg ggttcagatg
     1201 cagtaatacc gccagacctt cacaccagca atacatcata aaatcacaaa aacgcgaaac
     1261 ctttcgccaa atgactggca caggtagcaa tagttttaca atcccggcaa tgatgatcgg
     1321 gacggaacaa aaaatagtga ccaaaatggt caatacgata ctcagcaaaa gggttatcgc
     1381 agcgagtatt ctcgtcataa tgaatttatt caaaaggtta gccatagaca gtgcgctaaa
     1441 gaagcgcaag gcgcagattt tagcagaaaa cgacccaaat aacggatgat ccttaaggag
     1501 aaaaataatt catatctatc cacattagaa aaaatcccat tatctcaatt attagggatg
     1561 gctttatttt taactacatg aaaaacaaag acaaacatca tactgtaaaa agcatgataa
     1621 taaattaaaa gcgatgtaaa taatttatgc acaaagttat ccacatgacg atttgcgagc
     1681 gatccagaag atctacaaaa gattttcacg aaaagcggtg aaaaactcat gtttttatcc
     1741 tgtctgtggc atcctttacc cataatctga taaacaggca cggacattat ggttcagatc
     1801 ccccaaaatc cacttatcct tgtagatggt tcatcttatc tttatcgcgc atatcacgcg
     1861 tttcccccgc tgactaacag cgcaggcgag ccgaccggtg cgatgtatgg tgtcctcaac
     1921 atgctgcgca gtctgatcat gcaatataaa ccgacgcatg cagcggtggt ctttgacgcc
     1981 aagggaaaaa cctttcgtga tgaactgttt gaacattaca aatcacatcg cccgccaatg
     2041 ccggacgatc tgcgagcaca aatcgaacct ctgcacgcga tggttaaagc gatgggactg
     2101 ccgctgctgg cggtttctgg cgtagaagcg gacgacgtta tcggtactct ggcgcgcgaa
     2161 gccgaaaaag ccgggcgtcc ggtgctgatc agcactggcg ataaagatat ggcgcagctg
     2221 gtgactccaa atattacgct tatcaatacc atgacgaata ccatcctcgg accggaagag
     2281 gtggtgaata agtacggcgt gccgccagaa ctgatcatcg atttcctggc gctgatgggt
     2341 gactcctccg ataacatccc tggcgtaccg ggcgtcggtg aaaaaaccgc gcaggcattg
     2401 ctgcaaggtc tgggcgggct ggatacgctg tatgccgagc cagaaaaaat tgctgggttg
     2461 agcttccgtg gcgcgaaaac aatggcagcg aagctccagc aaaacaaaga agttgcttat
     2521 ctctcatacc agctggcgac gattaaaacc gacgttgaac tggagctgac ctgtgaacaa
     2581 ctggaagtgc agcaaccggc agcggaagag ttgttggggc tgttcaaaaa gtatgagttc
     2641 aaacgctgga ctgctgatgt cgaagcgggc aaatggttac aggccaaagg ggcaaaacca
     2701 gccgcgaagc cgcaggaaac cagtgttgca gacgaagcgc cagaagtgac ggcaacggtg
     2761 atttcttatg acaactacgt caccatcctt gatgaagaaa cactgaaagc gtggattgcg
     2821 aagctggaaa aagcgccggt atttgcattt gataccgaaa ccgacagcct tgataacatc
     2881 tctgctaacc tggtcgggct ttcttttgct atcgagccag gcgtagcggc atatattccg
     2941 gttgctcatg attatcttga tgcgcccgat caaatctctc gcgagcgtgc actcgagttg
     3001 ctaaaaccgc tgctggaaga tgaaaaggcg ctgaaggtcg ggcaaaacct gaaatacgat
     3061 cgcggtattc tggcgaatta cggcattgag ctgcgtggga ttgcgtttga taccatgctg
     3121 gagtcctaca ttctcaatag cgttgccggg cgtcacgata tggacagcct cgcggaacgt
     3181 tggttgaagc acaaaaccat cacttttgaa gagattgcgg gtaaaggcaa aaatccactg
     3241 acctttaacc agattgccct cgaagaggcc ggacgttacg ccgccgaaga tgctgatgtc
     3301 accttgcagt tgcatctgaa aatgtggccg gacctgcaaa aacacaaagg gccgttgaac
     3361 gtcttcgaga atatcgaaat gccgctggtg ccggtgcttt cacgcattga acgtaacggt
     3421 gtgaagatcg atccgaaagt gctgcacaat cattctgaag agctcacctt gcgtctggct
     3481 gagctggaaa agaaagcgca tgaaattgca ggtgaagaat ttaacctttc ttccaccaag
     3541 cagttgcaaa ccattctgtt tgaaaaacag ggtattaaac cgctgaagaa aacgccgggt
     3601 ggcgcgccgt caacgtcgga agaggtactg gaagaactgg cgctggacta tccgttgcca
     3661 aaagtgattc tggagtatcg tggtctggcg aagctgaaat cgacctacac cgacaagctg
     3721 ccgctgatga tcaacccgaa aaccgggcgt ttgcatacct cttatcacca ggcagtaact
     3781 gcaacgggac gtttatcgtc aaccgatcct aacctgcaaa acattccggt gcgtaacgaa
     3841 gaaggtcgtc gtatccgcca ggcgtttatt gcgccagagg attatgtgat tgtctcagcg
     3901 gactactcgc agattgaact gcgcattatg gcgcatcttt cgcgtgacaa aggcttgctg
     3961 accgcattcg cggaaggaaa agatatccac cgggcaacgg cggcagaagt gtttggtttg
     4021 ccactggaaa cagtcaccag cgagcaacgc cgtagcgcga aagcgatcaa ctttggtctg
     4081 atttatggca tgagtgcttt cggtctggcg cggcaattga acattccacg taaagaagcg
     4141 cagaagtaca tggaccttta cttcgaacgc taccctggcg tgctggagta tatggaacgc
     4201 acccgtgctc aggcgaaaga gcagggctac gttgaaacgc tggacggacg ccgtctgtat
     4261 ctgccggata tcaaatccag caatggtgct cgtcgtgcag cggctgaacg tgcagccatt
     4321 aacgcgccaa tgcagggaac cgccgccgac attatcaaac gggcgatgat tgccgttgat
     4381 gcgtggttac aggctgagca accgcgtgta cgtatgatca tgcaggtaca cgatgaactg
     4441 gtatttgaag ttcataaaga tgatgttgat gccgtcgcga agcagattca tcaactgatg
     4501 gaaaactgta cccgtctgga tgtgccgttg ctggtggaag tggggagtgg cgaaaactgg
     4561 gatcaggcgc actaagattc gcctgaacat gccctttttt cgtaagtaag caacataagc
     4621 tgtcacgttt tgtgatggct attagaaatt cctatgcaac aactgaaaaa aaattacaaa
     4681 aagtgctttc tgaactgaac aaaaaagagt aaagttagtc gcgtagggta cagaggtaag
     4741 atgttctatc tttcagacct tttacttcac gtaatcggat ttggctgaat attttagccg
     4801 ccccagtcag taatgactgg ggcgtttttt attgggcgaa agaaaagatc cgtaatgcct
     4861 gatgcgctat gtttatcagg ccaacggtag aattgtaatc tattgaattt acgggccgga
     4921 tacgccacat ccggcacaag cattaaggca agaaaattat tcgccgtcct gcgtttcttc
     4981 tacaggctgc atctcgctaa accaggtatc cagtttctgc cgcagcttgt ccacgccttg
     5041 tttcttcaac gaagaaaacg tttcaacctg cacatcaccg ttaaacgcca gtacagcttc
     5101 acgcaccata ttcaattgcg ctttacgtgc gccgcttgcc agtttgtccg ctttggtcag
     5161 cagcaccaga acggcgatat tgctgtctac cgcccactca atcatctgct gatccaaatc
     5221 tttcagcgga tggcgaatat ccattagcac caccagacct tgcaggctat gacgtttttc
     5281 gaggtattcg ccgagcgcac gctgccattt gcgcttcatc tcttccggga cttccgcata
     5341 accgtaccca ggcaagtcaa ccagacgctt gccgtcagcc acttcaaaca ggttgataag
     5401 ctgggtgcgc cctggggttt ttgaggtacg agccaggctt ttctggttag tcagcgtgtt
     5461 cagcgcgctg gatttacctg cgttggaacg gcctgcaaaa gccacttcaa ttccggtatc
     5521 ggaaggtagg tggcgaatat caggcgcact catcacaaaa tgcgtctgtt gataattcaa
     5581 attagtcaaa gcggtcgtct ccgtcagtca aagctttgtg gcgattatac ctgaaccata
     5641 ataaaaggcg gatttttcgg cgtgagcgtt gtaagtaaaa gccatacgct ttgtgagaca
     5701 ttgccgatag tctttatgcg aaatagcaga gaaaattctg cgatgcatgt caaataagct
     5761 atataaatca gtgaattgct tttatataaa actctgaaaa tgtgcaaata ctgatggcgg
     5821 ttgattgttt gtttaaagcg aaggcgtaaa gtagcaccca tagagcgagg acgctaacag
     5881 gaacaatgac tcaggatgag ggtcaggagc gccaggaggc gaagacagag gattgtcagg
     5941 aagacaaacg tccggagacg taattaaacg gaaatggaat caacacggat tgttccggct
     6001 aaaggaaaaa cagggtgtgt tggcggcctg caaggattgt aagacccgtt aagggttatg
     6061 agtcaggaaa aaaggcgaca gagtaatctg tcgccttttt tctttgcttg ctttctgtta
     6121 gattccgccg caaatcgata ctgaataaaa cggctaaaag acgaaccatt atgaaaccat
     6181 catcttcaaa ctcacgcagc aaaggtcatg caaaagcgcg tcgaaaaaca cgcgaggagc
     6241 tggatcagga agctcgtgat cgcaagcgtc agaaaaaacg tcgtggtcat gcgccgggca
     6301 gccgcgcagc gggcggaaac accacgtcag gcagcaaagg ccagaacgca ccaaaagatc
     6361 cacgtattgg cagtaaaacc cctattccat tgggcgtgac tgaaaaagtc accaaacagc
     6421 acaaaccgaa gagtgagaaa cctatgcttt caccgcaggc ggagttggaa ttactggaaa
     6481 cggatgagcg tctggatgcg ctgctggaac gtctggaagc aggcgaaacc ctgagtgccg
     6541 aagagcaatc ctgggtggat gctaaactgg atcgtattga tgagttgatg cagaaactcg
     6601 gcctctctta tgacgatgac gaagaagagg aagaagacga gaagcaagaa gacatgatgc
     6661 gtctgctgcg gggcaactaa cggattgccg ccgtgggcct tcccgttctg ctgataaccc
     6721 ttccggttat atgttatctg gtgtggttat tcgttaaact acagcggttg tcgcggcgac
     6781 aaaagtggct gcgcaaccgg ctgatgaccc gaaacgggca tccgccggta cgccgtagcc
     6841 gccagagacg ccatcggaag gagtgagcat gtctgtacag caaatcgact gggatctggc
     6901 cctgatccag aaatataact attccgggcc acgatacacc tcgtacccga ccgcgctgga
     6961 gttttcagaa gacttcggcg aacaggcgtt tttacaagcc gtggcgcgct atcctgagcg
     7021 tccattatct ctctacgtac atatcccgtt ctgccataag ctttgttact tctgcggttg
     7081 caataagatt gttactcgcc agcagcacaa ggccgatcag tatctggacg cgctggagca
     7141 agaaatcgtc catcgtgcac cgctgttcgc cgggcgtcac gtcagccaat tgcactgggg
     7201 cggcggaacg ccgacgtatc tgaataaagc gcaaatcagc cgcctgatga agctgctgcg
     7261 cgaaaacttc cagttcaatg ccgatgcgga gatttcgatc gaagtcgatc cgcgggaaat
     7321 cgaactggat gtactcgatc atttacgcgc cgaaggcttt aatcgcctga gcatgggcgt
     7381 gcaggacttc aacaaagaag tgcaacgtct ggttaaccgc gagcaggatg aagagttcat
     7441 ctttgcactg cttaaccatg cgcgtgagat tggttttacc tccaccaaca tcgacctgat
     7501 ttacggcctg ccgaaacaga cgccggagag tttcgccttt accctgaaac gtgtggcgga
     7561 gctgaacccc gatcgtctga gtgtctttaa ctacgcgcat ctgccgacca tttttgctgc
     7621 tcagcgcaaa atcaaagatg ctgacctgcc gagtccgcag caaaaactcg atatcctgca
     7681 ggaaaccatc gccttcctga cgcaatcggg ctatcagttt atcggtatgg atcactttgc
     7741 ccgtccggat gacgagctgg cggtggccca gcgtgaaggc gtgctgcatc gtaacttcca
     7801 gggctacacc actcagggcg ataccgatct gctggggatg ggcgtttccg ccatcagcat
     7861 gattggcgac tgctacgcgc agaaccagaa agagttgaag cagtactatc agcaagtgga
     7921 tgaacaaggc aatgcgctgt ggcgtggtat tgcgctaacg cgtgatgact gtattcgccg
     7981 cgatgtgatt aagtcgctca tctgcaactt ccgtctggat tacgccccta ttgagaaaca
     8041 gtgggatttg cacttcgctg attactttgc ggaagatctc aagctgctcg ccccgttagc
     8101 aaaagatggg ctggtggatg tggatgagaa gggaatacag gtgacggcga aaggtcgctt
     8161 gctgatccgc aacatttgca tgtgctttga tacctatctg cgccagaaag cgcggatgca
     8221 gcagttctca cgggtgattt gaatagtgaa tggcgcttcg tttacaaagt agaaaacgaa
     8281 agcgccatca atgtgctgag aacaagattg cctgatgcgc tacgcttatc aggcctacaa
     8341 aacctgttga aaatattgct tttgtaggcc ggataaggcg ttcacgccgc atccggcatg
     8401 aacaaagagc acttcatcag caatctgaaa ctcaactaaa cagcccaatc attgcggcac
     8461 acagcacggc agcaacggca gtttgcggtg tgtggctgtc aactgcgcca ctcgatacca
     8521 gattaattat tgattccagc ataatgactc tccccgtttt ccgggcagat catactgaac
     8581 ttatcggaac agtaaagcgt aaaataccag caatttgcgc tcaataatca atctttacac
     8641 acaagctgtg aatcactcca tccccagctc ttttaactta cgcgtcaggg tgttgcggcc
     8701 ccagccgagt agccgcgccg cttcctgttt atgcccctgc gtatgtcgca acgcggtcgt
     8761 cagtaacgtc cgctccagct ctggctgcgc ttcggaaagc agattttgat gaccggaacg
     8821 cagcgctctg tctgcccact gcgcaagaag cgtcgcccag ctgtccggtt gcatttgcga
     8881 agtactctcc gcaaccgttg attcaaacag ttcgccgggc aaatcctgaa tcaacacttc
     8941 ctgcccggcg gccatcaccg ttagccagcg gcaggtgttt tccagctggc gcacgttgcc
     9001 tggccacgcc agacgcgtca gagcagcttc ggtttccgga tgcagtaact tcgcttctac
     9061 gcccagttcg cgcgcggcaa cctgtaaaaa atggcgcgcc agacggggaa tatcttcccg
     9121 acgttcgcgc agcggcggta gatgaacgcg gataacgttt aggcggtgga acagatcctc
     9181 acggaactta ccttcctgca ctcgctgttc gagattctgg tgagtggcag cgataatccg
     9241 cacatccact ttcaccggcg catagccgcc aacgcggtaa aactgaccgt ctgccagcac
     9301 gcgcagcaaa cgcgtctgca catccagcgg catatcacca atttcgtcga ggaataatgt
     9361 accgccatcg gcctgttcaa aacgcccctg acgaatggta ttcgcgccag taaacgcgcc
     9421 tttctcgtgg ccaaacagtt ctgattcgat caaatctttt gggatagctg ccatattcag
     9481 cgcgataaac ggtgctttgg cgcgcggact gtggcgatgc agggcatgag cgaccagttc
     9541 tttaccggtg ccggattcgc cgttaatcag cacgctaata gaagaacgcg aaagccgacc
     9601 gataatacgg aacacgtcct gcatggctgg cgcttcgccg atgatatcgg tcgttgggcc
     9661 gttaagctga atattacgcg gctgctgctg ttcctggtaa tgactgatag cgcgctcaac
     9721 cagcgccacg gcttcgtcga tatcaaacgg tttgggcaga taatcaaacg ccccttgttg
     9781 ataggcgctg acggcagcat ccagatcgga atgtgcggtc ataatgatga ccggaagcat
     9841 tggatggcgc tgtttaatct gcttgagcag cgccagcccg tccattcccg gcatacggat
     9901 atctgaaagc agcacatccg gcgttttgct cgccagcgcc tccagtactt ccgcgccgtt
     9961 ctcaaatgtc gtacaggtta aacccgctcc agcgagcgca cgttcaagca cccaacggat
    10021 ggaactatcg tcatcgacta cccagactat ccctcgttgc ataaacgtca cctttatttc
    10081 ctgataggca ggtaaaccga gaactcggta tgacctggcc aactggtaaa ttcaattttg
    10141 cctgaatgct gatcaatcaa attacgggcg atggataagc caagcccggt gccaccttcg
    10201 cggccgctga ccatcgggta aaacagcgta tcctgcaaat gaggcggaat gcccggcccg
    10261 ttatcttcca catcaatccg cgccgccagc cggtagcgct cgccgtgtaa ggtcagttga
    10321 aacgcggtgc gggtacgcag aatgatttca ccgccttccg gccccagcgc ctgtagcgca
    10381 ttgcgcacaa tattcagcaa gacctgttca atttgatccg ggtcgtgcgc cagttccggc
    10441 aggctgggat cgtaatcacg aatcaaccgc acgttgtccg gcagttccat cgacaccagc
    10501 gttaccacgc gttcagccac tttgtgaata ctttcggtaa cgcgcgtacc gggcagctgc
    10561 ggccccaaca gacggtcgac cagatttcgc agccggtccg cctgttcgat aatcactttg
    10621 gtatattcga gtagtgatgg gtcaggtaac gctttgctga gcagctgcgc cgcgccacgt
    10681 aaaccgccaa gcggattttt aatctcatgt gccaggccgc gcactaaatc acgggcagca
    10741 acctgctggg cgtgctgtag ctgttcctga cttaagcggc gctggttatc catcggagcc
    10801 atctccagca ggatcatgcc gtccggcata cgctgggccg tcacagaaag gatatgcgag
    10861 cgcccgtcga tgaccagcgt cacttcgtta tcggtaaaac cttgccccgc ctccagactt
    10921 tcttgcatca gctcgatatt taatgagaag tagctcaaca gttccggtaa cggtgtacca
    10981 aacaatttgc gggagctttg ggcgagcagt tgttgcgcgg cagggttggc gtaatggatc
    11041 tccaggttgt catcgattaa caaaatactg ttaatcagcg agttgaggat ctgcccagca
    11101 tcgggctgcg tgcctgttgc cataaagcag tctcctgaac aggttgcacc attttagtgc
    11161 attatagctt tttacggata aaaagcgcga agcatcagag aattgacgga gaaaaaagcc
    11221 catgcagaga tgggctgaaa gtttccacgg caactaaatc ccggcgttgt tgcgccgggt
    11281 agtacaactt caactattag acgctgtagt acagctcaaa ctctaccgga tgcggagtca
    11341 tacgcacgcg gtcatcttct tcgcgacgca gagcgatgta cgcatcaatt gcttcgtcag
    11401 tgaacacgcc accggctttc aggaactcgc ggtccagatc cagttcgttc agtgcttctt
    11461 ccagagagcc tgcaacctgt gggatctctt tcgcttcttc tggcggcagg tcatacaggt
    11521 ttttgtccat ggcttcaccc ggatggatct tgttcttgat accatcaaga ccggccatca
    11581 gcagggcagc aaagcacagg tacgggttag ctgccggatc cgggaaacgt acttcgatac
    11641 gacgtgcttt cggagaagaa accaccggaa tacggataga cgcagaacgg ttacgcgcag
    11701 agtaagccag cattaccggt gcttcatagc ccgggaccag acgcttataa gagttggtgg
    11761 tcgggtttgc cagggcgtta atcgctttag cgtgtttgat tacgccgcca atgtagtaca
    11821 gcgcctgctc agacagacct gcgtatttgt cgcctgcgaa caggttaacg ccgtttttag
    11881 acagagacat gtggcagtgc ataccggagc cgttatcacc gaacatcggt tttggcataa
    11941 aggtcgcggt tttaccgaag cggtgcgcta cgttgtgcac aacatatttg tagatctgaa
    12001 tttcgtcagc ttttttggtc atggtattga agcgggtagc cacttcgttc tgaccagcag
    12061 tcgctacttc gtggtgatgg gcttcaacca ccagccccat ctgttccatc accagacaca
    12121 tttcagaacg aatatcctga gccgagtcta ccggtggaac cgggaagtaa ccgcctttca
    12181 ctgccggacg gtgacctttg ttaccacctt cgtattgggt ggaggagttc catgcgcctt
    12241 cgatatcgtc gatagcaacg tgggaaccgg agatagatga tccgaaacgg atgtcatcga
    12301 acaggaagaa ttcaggttct ggcccgaaca gtactgtgtc ggcaatgcca gtggaacgca
    12361 ggtaatcttc ggcgcgcttc gcaatggagc gcgggtcacg gtcatagcct tgcagggtgc
    12421 caggttcaag gatgtcgcaa cggataatca gggtggagtc ggcgaagaac gggtcaatca
    12481 ctgcggtgga tgcgtctggc atcagcacca tgtcggactc gttaatgcct ttccagccgc
    12541 caatcgagga gccgtcaaac attttgcctt cttcgaagaa ttcagcattc acctgatgag
    12601 cagggatagt gacgtgctgt tctttacctt tagtatcggt gaagcgcaaa tcaacaaact
    12661 tcacttcgtg ctcgttcagc atcgtcagta cgtgttcagc ggacatactt taactctcct
    12721 ggattggtca tggtcgtcgt ggtaacgaaa tctgcaatta ttttggccgt gtcgccgtaa
    12781 aaaagataaa gcgaaatctg tgccaacttt taaattgccc ctaaaaggcg ttatcatgcg
    12841 caccatcgtg caaaagggct gcaccacgat gtgaatgttg caccaatata gtgcttcaat
    12901 ggaaacatta agcaccatgt tggtgcaatg acctttggat aacccttttt atgctccgtg
    12961 aaagcgatca caaagggact ctgcaatact tgtttgcgga ggatgtttgt gatcctgttt
    13021 tgtagtgcga ttaatccgtg tacaataacg cgctatttct aatgcctgag gcaaagttgt
    13081 gatcgaaaaa ttgcgtaata tcgccatcat cgcgcacgta gaccatggta aaaccaccct
    13141 ggtagacaag ctgctccaac aatccggtac gttcgactct cgtgccgaaa cccaagagcg
    13201 cgtgatggac tccaacgatt tggagaaaga gcgtgggatt accatcctcg cgaaaaacac
    13261 cgctatcaaa tggaatgatt accgtatcaa catcgttgat accccggggc acgccgactt
    13321 cggtggtgaa gttgaacgtg taatgtccat ggtagactca gtgctgctgg tggttgacgc
    13381 atttgacggc ccgatgccgc aaacgcgctt cgtaaccaaa aaagcgtttg cttacggcct
    13441 gaagccgatt gttgttatca acaaagttga ccgccctggc gcgcgtcctg attgggttgt
    13501 ggatcaggta ttcgatctgt tcgttaacct cgacgcgacc gacgagcagc tggacttccc
    13561 gatcgtttac gcttctgcgc tgaacggtat cgcgggtctg gaccacgaag atatggcgga
    13621 agacatgacc ccgctgtacc aggcgattgt tgaccacgtt cctgcgccgg acgttgacct
    13681 tgacggtccg ttccagatgc agatttctca gctcgattac aacagctatg ttggcgttat
    13741 cggcattggc cgcatcaagc gcggtaaagt gaagccgaac cagcaggtca ctatcatcga
    13801 tagcgaaggc aaaacccgca acgcgaaagt cggtaaagtg ctgggccacc tcggtctgga
    13861 acgtatcgaa accgacctgg cggaagctgg cgatatcgtt gcgatcacgg gccttggcga
    13921 actgaacatt tctgacaccg tttgcgacac gcaaaacgtt gaagcgctgc cggcactctc
    13981 cgttgatgag ccgaccgttt ctatgttctt ctgcgttaac acctcgccgt tctgcggtaa
    14041 agaaggtaag ttcgtaacgt ctcgtcagat cctggatcgt ctgaacaaag aactggtaca
    14101 caacgttgcg ctgcgcgtag aagaaaccga agacgctgat gcgttccgcg tttctggtcg
    14161 tggcgaacta cacctgtctg ttctgatcga aaacatgcgt cgtgaaggtt tcgaactggc
    14221 ggtatcccgt ccgaaagtta tcttccgtga aatcgacggt cgtaaacaag agccatatga
    14281 aaacgtgact ctggacgttg aagaacagca tcagggttct gtaatgcagg cgctgggcga
    14341 acgtaaaggc gacctgaaaa acatgaatcc agacggtaaa ggccgcgtac gtctcgacta
    14401 cgtgatccca agccgtggtc tgattggctt ccgttctgag ttcatgacca tgacttccgg
    14461 tactggtctg ctgtactcca ccttcagcca ctacgacgac gtacgtccgg gtgaagtggg
    14521 tcagcgtcag aacggcgtac tgatctctaa cggtcagggt aaagcggtcg cgttcgcgct
    14581 gttcggtctg caggatcgcg gtaagctgtt cctcggtcac ggtgcagaag tttacgaagg
    14641 tcagattatc ggtattcata gccgctctaa cgacctgact gtaaactgcc tgaccggtaa
    14701 gaaactgacc aacatgcgtg cttccggtac tgacgaagcc gttgttctgg ttccgcctat
    14761 ccgcatgact ctggaacaag ctctggagtt catcgatgat gacgaactgg tagaagtgac
    14821 tccgacctct atccgtattc gtaaacgtca cctgacggaa aacgatcgtc gtcgcgccaa
    14881 ccgcgcaccg aaagactatt aatttcgttt tttagttata aaaaacctgc catcgctg
//
LOCUS       DADMJB010000101        14602 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.101, whole genome shotgun sequence.
ACCESSION   DADMJB010000101 DADMJB010000000
VERSION     DADMJB010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14602
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.101"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..967
                     /locus_tag="JN078_002695"
     CDS             <1..967
                     /locus_tag="JN078_002695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041847.1"
                     /translation="WVGTKSLALTIPWDPKEKPNSSKCYCKDIYKDENTGDFLVMLWK
                     SDTDSTGSLLGASEDGEIGSSSVVKYTNSYRGKKVIWGRPCFYWVIPELETIVSIKFD
                     HSVCDSELFQDYVHSSITNRVKHSKRVKNKTEKGYIRLSNTDDEDLYKYMYRFDMKLR
                     SLETTHTELGKLIPKITHIVRRETIIINPNDARADWLKTFSTLVPFVSGKKNAKTRQI
                     EIKAEAKPSLNEVQEIIEKYSAEDREKRLWDNVGFATDKGITWVDKYRMRDILNVPSD
                     DYSTYSAAYIYEQISHKRKEFISPILKELKALQSQPRIKKASGED"
     gene            968..1504
                     /locus_tag="JN078_002696"
     CDS             968..1504
                     /locus_tag="JN078_002696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004152200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041848.1"
                     /translation="MLKAIAGIAKYTWIYMAIFIISLMIISSSDINYVYNDFANYCTL
                     LVSVSGMVFTIMGIWLAFLYPNALQRIVNPKTIETVDFTEQLEDTRRLEAIVGSVLKS
                     SFVMITLLVVYLVKLVFFKSHLYLESQDVIKNTSLALIIAISYMQIEAVISVILANVM
                     FINDLHNKREQRDIDDQV"
     gene            1455..2465
                     /locus_tag="JN078_002697"
     CDS             1455..2465
                     /locus_tag="JN078_002697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041849.1"
                     /translation="MIYITSESKETLMIKYEGKMKKNIRVIPKNIHSKLRRLGNTVVA
                     GTSIAFTENQLKSGALEHLGIYFDNGVNAYETSVIPDPLQGKYSLKNVFGEEIVRKDL
                     PKETHYTEIESPNWGDSSNGTHTVRLPYEKYPRDIIPPTLIAIEINHKQPSDSHFIFN
                     FRVTRILDKQSNKFDDELLFDLNLLQENLGKCGIEDADKPISTYADTLIVSWEIFPPG
                     SKEETLARIFRGKNITSDKKNVAENRYDFFMSLEPKKIVTGNSTFSNYIGAMLEDDLV
                     VFENIEYGNAIYILYDNWDDISKLSRIDLLSGRAGSNFDRIIHSGNWKDEVRKKVAAG
                     RL"
     gene            complement(2520..3785)
                     /locus_tag="JN078_002698"
     CDS             complement(2520..3785)
                     /locus_tag="JN078_002698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001522431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HAY9041850.1"
                     /translation="MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRR
                     PSDKKEDRLAFGVWPTVTLAQARAKRDQAKKLLAQGIDPKAEQKEAQAENSGAYSFET
                     IAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKH
                     DVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARL
                     AAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYR
                     GMKMKEEHIVQLSRQAMILLNQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGY
                     DTKTEVCGHGFRTMARGALGESGLWSEDAIERQLSHSERNNVRAAYIHTSEHLDERRL
                     MVQWWADYLQANKGKTITPYDFAKINKSR"
     gene            complement(3949..4033)
                     /locus_tag="JN078_002699"
     tRNA            complement(3949..4033)
                     /locus_tag="JN078_002699"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3997..3999),aa:Leu,seq:caa)
     gene            4229..5248
                     /gene="ahr"
                     /locus_tag="JN078_002700"
     CDS             4229..5248
                     /gene="ahr"
                     /locus_tag="JN078_002700"
                     /EC_number="1.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent aldehyde reductase Ahr"
                     /protein_id="HAY9041851.1"
                     /translation="MSMIKSYAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSD
                     LSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDAC
                     ISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKP
                     LLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVN
                     SRDPQALKALSGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLI
                     AGDRSISGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIKHVRDGKARYRVV
                     LKADF"
     gene            5378..6880
                     /locus_tag="JN078_002701"
     CDS             5378..6880
                     /locus_tag="JN078_002701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF853 domain-containing protein"
                     /protein_id="HAY9041852.1"
                     /translation="MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLA
                     ESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLTRLKNIGVNDWQPHANPVVVWDIFG
                     EKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQY
                     IGDNAKSFQNQYGNISSASVGAIQRGLLSLEKQGAAHFFGEPMLDIKDWMRTDTNGKG
                     VINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAP
                     QVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKEV
                     KAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTE
                     DERNGLINHSPVYGKYEDDVDRESAYEMLQKGFQASTKQQNNPPAKGKAVAVDDGILG
                     GLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR"
     gene            complement(7041..8123)
                     /gene="lptG"
                     /locus_tag="JN078_002702"
     CDS             complement(7041..8123)
                     /gene="lptG"
                     /locus_tag="JN078_002702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313266.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HAY9041853.1"
                     /translation="MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ
                     GSYDALGAGMYTLLSVPKDVQTFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQV
                     ALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNF
                     VYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPK
                     QITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMW
                     SKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYG
                     IPPIIGALLPSASFFLISLWLLMRKS"
     gene            complement(8123..9223)
                     /gene="lptF"
                     /locus_tag="JN078_002703"
     CDS             complement(8123..9223)
                     /gene="lptF"
                     /locus_tag="JN078_002703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HAY9041854.1"
                     /translation="MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIP
                     ANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAA
                     MILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF
                     IESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTAL
                     LRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTV
                     FMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTV
                     NLIYLALAIVLNLWDTVPVRRLRASFSRKGAV"
     gene            9490..11001
                     /gene="pepA"
                     /locus_tag="JN078_002704"
     CDS             9490..11001
                     /gene="pepA"
                     /locus_tag="JN078_002704"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HAY9041855.1"
                     /translation="MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYIS
                     ALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLND
                     TGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFEQLKTNKSEPRRPLRKMVFN
                     VPTRRELTSGERAILHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNV
                     ITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDS
                     GGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRP
                     GDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHI
                     TGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITA
                     GCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE"
     gene            11161..11604
                     /gene="holC"
                     /locus_tag="JN078_002705"
     CDS             11161..11604
                     /gene="holC"
                     /locus_tag="JN078_002705"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004098129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HAY9041856.1"
                     /translation="MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACE
                     DEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTS
                     FADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK"
     gene            11604..14459
                     /gene="valS"
                     /locus_tag="JN078_002706"
     CDS             11604..14459
                     /gene="valS"
                     /locus_tag="JN078_002706"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000416368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HAY9041857.1"
                     /translation="MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNV
                     TGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTR
                     HDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRL
                     YKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLV
                     VATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCV
                     KITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQK
                     LERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKP
                     AVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRN
                     EEEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSG
                     FDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPL
                     DMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALAST
                     GRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFN
                     QTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLV
                     TVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTE
                     WLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVL
                     PADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEG
                     FVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL"
     gene            complement(14515..>14602)
                     /locus_tag="JN078_002707"
     CDS             complement(14515..>14602)
                     /locus_tag="JN078_002707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF898 domain-containing protein"
                     /protein_id="HAY9041858.1"
                     /translation="PLINKEEQPDKGFLASISRGIMPSLPFL"
BASE COUNT         3857 a         3511 c         3765 g         3469 t
ORIGIN      
        1 ttgggtggga actaaatctc ttgcactcac gataccatgg gatccaaaag aaaaaccaaa
       61 cagttcaaag tgttattgca aggatattta taaggatgaa aatactggtg atttcttagt
      121 catgttatgg aaatctgata ctgatagtac gggctcttta ttaggagcta gtgaagacgg
      181 tgaaatcgga agctcatcgg tggttaaata tactaatagc tacagaggga aaaaagttat
      241 ctgggggcgg ccatgctttt attgggttat acctgaactt gaaactatag tatccattaa
      301 attcgaccat tctgtttgtg attctgaact atttcaagac tatgtacact catctattac
      361 taatagagtt aaacatagca aaagggttaa aaataaaacc gagaaaggtt atataaggct
      421 atctaatacc gatgacgaag acttatataa atatatgtac aggtttgata tgaagctcag
      481 aagcttagaa accactcata ctgagttagg taaactaata ccaaaaataa cacacatagt
      541 tcgcagggaa actattatta taaatccaaa tgatgcacga gctgattggt taaagacctt
      601 tagcactctc gttccatttg tgtccggaaa gaaaaatgcc aaaacaagac aaattgaaat
      661 aaaagcagaa gcaaaaccat ccttgaatga agttcaagaa atcattgaaa agtattcggc
      721 tgaggataga gaaaaacgtc tttgggacaa tgttggattt gctacagaca agggtataac
      781 ttgggtggat aaatatagaa tgcgtgatat tctcaatgtc ccttctgacg actattcaac
      841 atattccgcc gcatatattt acgaacaaat atcacacaaa agaaaagaat ttatttcccc
      901 tatattaaaa gaattaaaag cattacaatc tcaaccaaga ataaagaaag catctggaga
      961 ggattgaata ttgaaagcta tagcaggcat agccaaatac acatggatat acatggcgat
     1021 attcattata tcgctgatga ttatttcgtc atccgatatt aactatgtgt ataacgattt
     1081 tgccaactat tgcactcttc tcgtatcagt ttctggaatg gtttttacta ttatgggaat
     1141 ttggttagcg tttctttacc caaatgcttt gcagcgtatt gtgaacccca aaactataga
     1201 aaccgttgat ttcaccgaac aactggaaga tacaagaaga ttagaagcaa tagttggaag
     1261 tgttctaaaa tcatctttcg ttatgattac tttacttgtt gtatacttag ttaaactagt
     1321 gtttttcaaa agtcatcttt atttagagag ccaagatgta ataaaaaaca catctttagc
     1381 attaattatt gctatttcgt acatgcagat tgaggcagta attagcgtaa tacttgcaaa
     1441 tgttatgttt atcaatgatt tacataacaa gcgagagcaa agagacattg atgatcaagt
     1501 atgagggaaa aatgaaaaag aatatacgtg ttatacctaa aaatattcat agcaagttaa
     1561 gaaggcttgg taatacagtt gttgctggca cttctattgc atttacggaa aaccaattaa
     1621 aaagtggagc attagagcac cttggaatat attttgataa tggtgttaat gcttatgaga
     1681 cgtcggtcat accagatcca ttgcagggta aatattcact taaaaatgtt tttggtgaag
     1741 aaattgtcag aaaagacctc ccaaaagaaa ctcattacac tgaaattgag tcacctaact
     1801 ggggtgatag ctctaatggt acacatactg ttagattacc ttacgagaaa tatcccagag
     1861 acattatacc accaacactc atagccattg aaattaatca caaacagccc tcggacagcc
     1921 atttcatatt taacttcaga gtaactagaa ttttagacaa acaatcaaat aagtttgatg
     1981 atgaattatt atttgattta aatcttcttc aagaaaatct tggtaaatgt ggaattgagg
     2041 atgctgataa acccatatcg acttatgctg atacacttat agtctcatgg gaaatatttc
     2101 caccaggtag taaagaagaa actttagcaa gaatttttag aggtaaaaat atcacttccg
     2161 acaagaaaaa tgtcgctgaa aatagatatg acttcttcat gagtcttgaa cctaaaaaaa
     2221 tcgtcacagg aaacagcacg ttcagtaatt atattggagc tatgctggag gacgatttgg
     2281 ttgtatttga aaacatagaa tatggtaatg ctatatatat cctctatgat aactgggatg
     2341 atatcagcaa gctatctcga attgacttat tatcaggaag agcaggaagt aatttcgata
     2401 gaataatcca tagtggcaat tggaaagatg aagtacgaaa aaaagttgct gctggaagat
     2461 tatgatcaaa gtgtttaata cagaaataaa cgcctatata ttataggcgt ttattttcac
     2521 tatcgacttt tgtttatttt agcaaaatca taaggtgtta ttgttttgcc cttatttgct
     2581 tggagataat cagcccacca ttgaaccatc aatcgacgtt catccaaatg ttcagaggtg
     2641 tgaatataag cagcacgtac attattacgc tctgaatggc tcaactgtcg ttctatagca
     2701 tcttcactcc ataatccgga ctcgcccaac gcaccacggg ccatcgttct aaacccgtgc
     2761 ccgcaaactt cggttttcgt gtcatagccc atcgcacgca atgcgctatt taccgtgttt
     2821 tcgctcataa ccttagttgc gtcatgatca cccggaaaaa gcagctcttt atctccacta
     2881 atctgcttta actggtttag caaaatcatc gcctgccgac taagctgaac gatatgctcc
     2941 tctttcatct tcatgccacg gtacgagtaa cgcacacctt taatttcttc tcgttttgca
     3001 ggtactcgcc agagagattt atcgaagtcg aactcatccc aacgcgcgaa acgtaactca
     3061 ctggaacgca caaaagttag taaggaaagc tcaaccgcga tccgcgtcat tacacggcca
     3121 cgatatgcag caagacgagc aagaaactca gggaaccggc tggagggcaa agcggggtaa
     3181 tgtcgcgctt tggttgtcga tagcgcaccg gccatatcac tggctggatt tgagtcgatg
     3241 taatcgttct gtactgcata acgcataata gccgtgacac gctgctgaag gcgctgtgca
     3301 acgtcatgct taccactggc atcaactttt ttaatcgggg ctaataggtg gctagttttg
     3361 agctgacgga tgtcagatga accaatatga ggaaagatat aaagctcaag ataacgtaga
     3421 acgcgtgatc ggtgatcttc actccagcgc ttattactag catgccattc acgagcgata
     3481 gtttcgaaag aatatgcccc cgaattctcg gcctgagctt ctttctgttc ggcttttgga
     3541 tcaatgccct gcgctaacag ctttttagct tgatcgcgct ttgctcttgc ctgagcaagc
     3601 gtcacagtag gccaaacacc aaacgcgaga cgatcctctt ttttgtcaga gggacgtctg
     3661 tatttcatgc gccagtattt ggaacctttg gccgaaacct caagatacaa accaccacca
     3721 tcggccattt tgtaggtttt gtcttttggc tttgcggtct cgacctgtct ggcgttgagc
     3781 ttcatttggg ggcacatttc taatcgaagt taagatgccc ccaattatgc ccccaatgat
     3841 atccggattt caacggacaa cctcggaaga cgcaggacga aaaaatcgct gcaagcattg
     3901 attttaaagg gatatttgga ctttctcgga tggtcttgga agtaagaatg gtgccgaagg
     3961 ccggactcga accggcacgt atttctacgg ttgattttga atcaactgcg tctaccgatt
     4021 tcgccacttc ggcactgaag aggtatgcgg aaaacgttgt ggattatacc tgtcgcacgc
     4081 caccatgcaa gcgccagctt gctcgcacct cgctaagtgc tgaaattttc agcattgcac
     4141 acagcgatgt gtaacctttg tcacactcca ggcaccccgc cctgccatgc tctacacttc
     4201 ccaaacaaca ccagagaagg accaaaaaat gtcgatgata aaaagctatg ccgcaaaaga
     4261 agcgggcggc gaactggaag tttatgagta cgatcccggt gagctgaggc cacaagatgt
     4321 tgaagtgcag gtggattatt gcgggatctg ccattccgat ctatcgatga tcgacaatga
     4381 atggggattt tcacaatatc cgctggttgc cgggcatgag gtgattgggc gcgtggtggc
     4441 actcgggagc gccgcgcagg ataaaggttt gcaggtcggt cagcgtgtcg ggattggctg
     4501 gacggcgcgt agctgtggtc actgcgacgc ctgtattagc ggtaatcaga tcaactgcga
     4561 gcaaggtgcg gtgccgacga ttatgaatcg cggtggcttt gccgagaagt tgcgtgcgga
     4621 ctggcaatgg gtgattccac tgccagaaaa tattgatatc gagtccgccg ggccgctgtt
     4681 gtgcggcggt atcacggtct ttaaaccact gttgatgcac catatcactg ctaccagccg
     4741 cgttggggta attggtattg gcgggctggg gcatatcgct ataaaacttc tgcacgcaat
     4801 gggatgcgag gtgacggcct ttagttctaa tccggcgaaa gagcaggaag tactggcgat
     4861 gggtgccgat aaagtggtga atagccgcga tccgcaggca ctgaaagccc tgtcggggca
     4921 gtttgatctc attatcaata ctgtgaacgt cagcctcgac tggcagcctt attttgaggc
     4981 gctgacctat ggcggtaatt tccatacggt cggtgcggtt ctcacgccgc tgtctgttcc
     5041 ggcctttacg ttaattgcgg gcgaccgcag catctctggt tctgctaccg gcacgcctta
     5101 tgagctgcga aagctgatgc gctttgccgc ccgtagcaag gttgcgccga ccaccgaact
     5161 gttcccgatg tcgaaaatta acgatgccat caagcatgtg cgcgacggta aggcgcgtta
     5221 ccgcgtggtt ctgaaagccg acttctgatc cctttgccgg gtgcctgtcg cccggcactt
     5281 aaatctcttt ggaaggcgtc tcgcaatctg ctgaatttag cggtgaagag tgcgcagccg
     5341 ttgcctatac tccaggcagg aaactggagg aaatctcatg agcgaacccc tattaattgc
     5401 ccgcacgccg gacacagaac tttttttact gccgggaatg gctaaccgtc acgggctgat
     5461 tactggcgca acggggacgg gtaaaaccgt tacgctgcaa aaactggcag agtcattgtc
     5521 ggaaatcggc gtgccggtgt ttatggctga tgtgaaaggc gatctgaccg gtatcgcgca
     5581 ggcaggaacg gcgtcggaaa aactgctcac aaggcttaaa aatatcggcg tcaatgactg
     5641 gcaaccgcat gctaatccgg tggtggtgtg ggatatcttt ggcgagaaag gccatccggt
     5701 gcgggcgacg gtttcagacc tggggccgct gttgctggcg cggctgttga atctcaacga
     5761 tgtgcaatct ggcgtgctga atatcatctt ccgtattgct gacgatcagg gattgttgct
     5821 gctcgacttt aaagatctgc gggcgattac ccagtacatc ggcgataacg ccaaatcttt
     5881 ccagaatcag tacggtaata tcagtagcgc atcggttggt gccatccagc gcggtttact
     5941 gtcgctggaa aagcaaggtg cggcgcattt ctttggcgag ccgatgctgg atatcaaaga
     6001 ctggatgcgc accgatacca acggtaaagg cgttatcaat atcctcagcg ccgagaagct
     6061 ttatcagatg ccgaaactgt acgccgccag cctgctgtgg atgctttcag agttgtatga
     6121 acaattgccg gaagcgggcg atctggagaa accaaaactg gtgtttttct tcgacgaggc
     6181 acatctgctg tttaacgatg caccgcaggt actgctggat aagattgagc aggtaataag
     6241 gcttattcgc tcaaaaggcg tgggcgtctg gttcgtttcg caaaacccgt ctgatattcc
     6301 ggataatgtg ctcgggcagc tcggtaatcg cgttcaacac gctttgcggg cttttacgcc
     6361 caaagatcag aaagaggtaa aagctgcggc gcaaaccatg cgggccaatc cggcgtttga
     6421 taccgaaaag gcaatccagg aactggggac cggcgaggcg ttaatctcgt ttctcgatgc
     6481 aaaaggaagt ccttctgtgg tggaacgggc gatggtgatt gcgccttgtt cgcggatggg
     6541 accggtgacg gaagatgagc gcaatggctt gattaaccac tccccggtgt atggcaagta
     6601 cgaggatgac gtggaccggg aatccgccta tgagatgttg caaaaaggct ttcaggccag
     6661 taccaagcag caaaataatc ctcccgcgaa agggaaagcg gtggcggtgg atgacggtat
     6721 tcttggtgga ttgaaggata ttttgtttgg cactaccgga ccacgcggcg ggaagaaaga
     6781 tggtgtggtg caaacaatgg cgaaaagcgc cgcccgccag gtgacgaatc agattgtacg
     6841 tgggatgttg gggagtttgc tggggggaag aagaaggtaa gtcaggcgag atttgtcttt
     6901 gcctgatgcg acgctggcgc gtcttatcat gcctacacca ctgcaatata ttggattttc
     6961 atgatttttc aggcatgaac gaagcacact ttgctaacaa taataaaggg agctttcgct
     7021 ccctttattc gttcattcgg ttacgatttt ctcattaaca gccacaggct gattaagaag
     7081 aagctggcgc ttggcaacag tgcgccgatg atcggcggga tgccataaac caacgtcagc
     7141 gggccgaaga tctggtccag tacgtagaag acaaaaccga agctgatacc ggtgaccaca
     7201 cgcacgccca tcggtacgct acgcagtggg ccaaagatga acgacagcgc catcagcatc
     7261 atcaccgcca cggatagcgg ctggaagatt ttgctccaca tattgagctg ataacgtccg
     7321 gcatcctgac cgctcgactt cagatacttc acgtagttgt gcaaaccgct gattgagagt
     7381 gcatccgggt ccagcgccac cacgcccagt ttgtccggcg tgaggttggt tttccaggtg
     7441 ccgctcaccg tctgcgaacc ggtgatctgt ttcggattgg tcagatcaga ttcatcaacc
     7501 tgcgacagac gccagacttt atgttccggg tcaaacttcg cagtagcggc atagcgtacg
     7561 gattgcagac gacgattctc gttaaaggca taaatactga tgccacctaa ctcttcgtca
     7621 cctttaaccc gctcaatgta aacgaagttg ttgccatctt tcgcccataa gccttgctgg
     7681 gtagagagca acgagccgcc gtacatcgcc tgcgcacggt agttacgcgc catctgctcg
     7741 ccctgcggcg cgacccattc accaatcgcc atcgtcagca agaccagcgg aatggcggtt
     7801 ttcatcaccg acagcgcaac ctgcatacgg gtgaaaccag aagcctgcat caccaccagt
     7861 tcgctgcgct gcgccagcat cccaagacca agcaacgccc caagcagagc cgccatcggg
     7921 aagaatgttt gcacatcttt cggcacgctc agcaaggtat acattcctgc gcctaacgcg
     7981 tcgtaactcc cctgcccggc ttttttcagc tgatcgacaa atttgataat gcccgacagc
     8041 gacaccagca tgaacagcgt catcatgatg gtggtgaaaa tagttttacc gatatagcgg
     8101 tcaagtacgc caaaaggttg catcacaccg ctcctttacg cgaaaaactg gcgcgcaggc
     8161 ggcggaccgg cacggtgtcc caaaggttga gaacaatcgc caaagccaga taaatcaggt
     8221 taacggtcca catccacagc gtcgggtcca gcttaccttt accgccgttc gatttcaggg
     8281 aggtctggat caggaagaaa agtagataca gcagcatggc tggcagcatc gatagtacgc
     8341 gtccctgacg cgggttaacc acgctcagcg gtacgaccat aagtgccatc ataaacacgg
     8401 tgaataccaa cgtgatacgc cagttcagtt ctgcgcgggc acgatcggtg tcagtgttcc
     8461 acaatgtacg catgtccatc tggtcggtat cgttcgggtc gagcgctacc gcctggtgac
     8521 caatgatcgc ctgataatcc tggaagtccg taatgcggaa atcacgtaac agtgcagtgc
     8581 cttcgaagcg cgttccctgg ttgagagtga cgacctggga gccgtcgcgc agctgggtta
     8641 aatgtccgga atcggccacc accacagaag gacgtgcatt accttttggt cgaatttgcg
     8701 cgaggaacac atctttgaaa tcgctgccgt caacgctttc gatgaacagc accgagctgc
     8761 cattagtcgc ttgctggaat tgcccttgcg ccagcgccgc catgccaggg ttcgctttcg
     8821 cttctgctaa cacttcatcc tgatgacgcg atgaccacgg tcccgcccac atcacgttaa
     8881 ccgccgcgac gattgcagtg aataccgcaa ggatcattgc cgctttcacc agaaccgctt
     8941 tgctcaggcc gcaggcatgc attaccgtaa tttcactttc ggtatacagt ttgcccagcg
     9001 tcatcagcag cccgaggaac aggcttaatg gcaggataag ctgcgccatt tccggcacgc
     9061 ccaacccgag aagggagagc accagattcg ccggaatatc gccgtcaacc gctgcgccga
     9121 ggatcctcac taacttttga cagaagaaga tcaaaagcaa gatgaagagt atcgccagct
     9181 ggcttttgag cgtctcccgc accagatatc ttatgattat cactttaaat acgcccgtaa
     9241 aaactcgtct tttgcaggat tttagcttgt ttcatggctt aaacgtcatt tattctcttg
     9301 agtcgtcgaa atcgtcgcta agataattat actcaacgga ttcacctctc agattttgtt
     9361 ctgacgtgcc aatgccgtaa taacgttaag attaacacga agtcatcgca acagcggaca
     9421 tgagttacga aagcttgcaa ttctatctgt agccaccgcc gttgtcttta agattcagga
     9481 gcgtagtgca tggagtttag tgtaaaaagc ggtagcccgg agaaacagcg gagtgcctgc
     9541 atcgtcgtgg gcgtcttcga accacgtcgc ctttctccga ttgcagaaca gctcgataaa
     9601 atcagcgatg ggtacatcag cgccctgcta cgtcggggcg aactggaagg aaaaccgggg
     9661 cagacattgt tgctgcacca tgttccgaat gtactttccg agcgaattct ccttattggt
     9721 tgcggcaaag aacgtgagct ggatgagcgt cagtacaagc aggttattca gaaaaccatt
     9781 aatacgctga atgatactgg ctcaatggaa gcggtctgct ttctgactga actgcacgtt
     9841 aaaggccgta acaactactg gaaagtgcgt caggctgtcg agacggcaaa agagacgctc
     9901 tacagtttcg aacagctgaa aacgaacaag agcgaaccgc gtcgtccgct gcgtaaaatg
     9961 gtgttcaacg tgccgacccg ccgtgaactg accagcggtg agcgcgcgat cctgcacggt
    10021 ctggcgattg ccgccgggat taaagcagca aaagatctcg gcaatatgcc gccgaatatc
    10081 tgtaacgccg cttacctcgc ttcacaagcg cgccagctgg ctgacagcta cagcaagaat
    10141 gtcatcaccc gcgttatcgg cgaacagcag atgaaagagc tggggatgca ttcctatctg
    10201 gcggtcggtc agggttcgca aaacgaatcg ctgatgtcgg tgattgagta caaaggcaac
    10261 gcgtcggaag atgcacgccc aatcgtgctg gtgggtaaag gtttaacctt cgactccggc
    10321 ggtatctcga tcaagccttc agaaggcatg gatgagatga agtacgatat gtgcggtgcg
    10381 gcagcggttt acggcgtgat gcggatggtc gcggagctac aactgccgat taacgttatc
    10441 ggcgtgttgg caggctgcga aaacatgcct ggcggacgag cctatcgtcc gggcgatgtg
    10501 ttaaccacca tgtccggtca aactgttgaa gtgctgaata ccgacgctga aggccgcctg
    10561 gtactgtgcg acgtgttaac ttacgttgag cgttttgagc cggaagcggt gattgacgtg
    10621 gcgacgctga ccggtgcctg cgtgatcgcg ctgggtcatc acattaccgg tctgatggcg
    10681 aaccataatc cgctggccca tgaactgatt gccgcgtctg aacaatccgg tgaccgcgca
    10741 tggcgcttac cgctgggtga cgagtatcag gaacagctgg agtccaattt tgccgatatg
    10801 gcgaacattg gcggtcgtcc tggtggggcg attaccgcag gttgcttcct gtcgcgcttt
    10861 acccgtaagt acaactgggc gcacctggat atcgccggaa ccgcctggcg ttctggtaaa
    10921 gcaaaaggcg ccaccggtcg tccggtggcg ttgctggcac agttcctgtt aaaccgcgct
    10981 gggtttaacg gcgaagagta attgcgtcag gcaaggctgt tattgccgga tgcggcgtga
    11041 acgccttatc cgacctacac agcactgaac tcgtaggcct gataagacac aacagcgtcg
    11101 catcaggcgc tgcggtgtat acctgatgcg tatttaaatc caccacaaga agccccatat
    11161 atgaaaaacg cgacgttcta ccttctggac aatgacacca ccgtcgatgg cttaagcgcc
    11221 gttgagcaac tggtgtgtga aattgccgca gaacgttggc gcagcggtaa gcgcgtgctc
    11281 atcgcctgtg aagatgaaaa gcaggcttac cggctggatg aagccctgtg ggcgcgtccg
    11341 gcagaaagct ttgttccgca taatttagcg ggagaaggac cgcgcggcgg tgcgccggtg
    11401 gagatcgcct ggccgcaaaa acgcagcagc agcccgcgcg atatattgat tagtctgcga
    11461 acaagctttg cagattttgc caccgctttc acagaagtgg tagacttcgt tccttatgaa
    11521 gattctctga aacaactggc gcgcgaacgc tataaagcct accgcgtggc tggtttcaac
    11581 ctgaatacgg caacctggaa ataatggaaa agacatataa cccacaagat atcgaacagc
    11641 cgctttacga gcactgggaa aagcagggct actttaagcc taatggcgat gaaagccagg
    11701 aaagtttctg catcatgatc ccgccgccga acgtcaccgg cagtttgcat atgggtcacg
    11761 ccttccagca aaccatcatg gataccatga tccgctatca gcgcatgcag ggcaaaaaca
    11821 ccctgtggca ggtcggtact gaccacgccg ggatcgctac ccagatggtc gttgagcgca
    11881 agattgccgc agaagaaggt aaaacccgtc acgactacgg ccgcgaagct ttcatcgaca
    11941 aaatttggga atggaaagcg gaatccggcg gcacgattac ccgtcagatg cgccgtctcg
    12001 gcaactccgt cgactgggag cgtgaacgct tcacgatgga cgaaggcctg tccaatgcgg
    12061 tgaaagaagt tttcgttcgt ctgtataaag aagacctgat ttaccgtggc aaacgcctgg
    12121 taaactggga tccgaaactg cgcaccgcta tctctgacct ggaagtggaa aaccgcgaat
    12181 cgaaaggttc gatgtggcac atccgctatc cgctggctga cggcgcgaaa accgcagacg
    12241 gtaaagatta tctggtggtt gcgactaccc gtccggaaac cctgttgggc gataccggcg
    12301 tggccgttaa cccggaagat ccgcgttaca aagacctgat tggcaaatat gtcattctac
    12361 cgctggttaa ccgtcgtatt ccgatcgttg gcgacgaaca cgccgacatg gaaaaaggca
    12421 ccggctgcgt gaaaatcact ccggcgcacg actttaacga ctatgaagtg ggtaaacgtc
    12481 acgcgctgcc gatgatcaac atcctgacct ttgacggcga tatccgtgaa agcgcccagg
    12541 tgttcgatac caaaggtaac gaatctgacg tttattccag cgaaatcccg gcagagttcc
    12601 agaaactgga gcgttttgct gcacgtaaag cagtcgttgc tgcggttgac gcgctcggcc
    12661 tgctggaaga aattaaaccg cacgacctga ccgtgcctta cggcgaccgt ggcggcgtag
    12721 ttatcgaacc gatgctcacc gaccagtggt acgtgcgtgc cgatgtactg gcgaaaccgg
    12781 cggttgaggc ggttgagaac ggcgacattc agttcgtacc gaagcagtac gaaaacatgt
    12841 acttctcctg gatgcgcgat attcaggact ggtgtatctc tcgtcagctg tggtggggtc
    12901 accgtatccc tgcatggtac gacgaagcag gtaacgttta tgttggccgc aacgaagaag
    12961 aagtgcgcaa ggaaaataac ctcggtgccg acgttgccct gcgtcaggac gaagacgttc
    13021 tcgacacctg gttctcttct gcgctgtgga ccttctctac cctaggctgg ccggaaaaca
    13081 ccgacgcact gcgccagttc cacccaacca gcgtgatggt atctggtttc gacatcattt
    13141 tcttctggat tgcccgcatg atcatgatga ccatgcactt catcaaagat gaaaatggca
    13201 aaccgcaggt gccgttccac accgtttaca tgaccggcct gattcgtgac gacgaaggcc
    13261 agaagatgtc caaatccaag ggtaacgtta ttgacccgct ggatatggtt gacggtattt
    13321 cgctgccgga actgctggag aaacgtaccg gcaatatgat gcagccgcag ctggcggaca
    13381 aaatccgtaa gcgcaccgag aaacagttcc cgaacggcat tgagccgcac ggcaccgatg
    13441 ccctgcgctt caccctggcg gcgctggctt ctaccggtcg tgacatcaac tgggatatga
    13501 aacgcctgga aggctaccgt aacttctgta acaagctgtg gaacgccagc cgctttgtgc
    13561 tgatgaacac ggaaggtcag gattgcggct tcaacggtgg tgaaatgacg ctgtcgctgg
    13621 cggaccgctg gattctggca gagttcaacc agaccatcaa agcgtaccgc gaagcgctgg
    13681 acagcttccg cttcgatatc gctgcaggca ttctgtatga gttcacctgg aaccagttct
    13741 gcgactggta tctggagctg actaagccgg taatgaacgg tggaaccgaa gccgaactgc
    13801 gcggtactcg ccatacgctg gtgactgtac tggaaggtct gctgcgcctc gcgcatccga
    13861 tcattccgtt catcaccgaa accatctggc agcgtgtgaa agtactttgc ggtatcactg
    13921 ccgacaccat catgctgcag ccgttcccgc agtacgatgc atctcaggtt gatgaagccg
    13981 cactggctga caccgagtgg ctgaaacagg cgatcgttgc ggtacgtaac atccgtgcag
    14041 aaatgaacat cgcgccgggc aaaccgctgg agctgctgct gcgtggttgc agcgcggatg
    14101 cagaacgtcg cgtaaatgaa aaccgtggct tcctgcaaac cctggcgcgt ctggaaagca
    14161 tcaccgtgct gcctgccgat gacaaaggtc cggtttccgt tacgaagatc atcgacggcg
    14221 cagagctgct gatcccgatg gctggcctca tcaacaaaga agatgagctg gcgcgtctgg
    14281 cgaaagaagt ggcgaagatc gaaggcgaaa tcagccgtat cgagaacaag ctggcgaatg
    14341 aaggctttgt cgcccgcgca ccggaagcgg tcatcgcgaa agagcgtgag aagctggaag
    14401 gctatgcaga agcgaaagcg aagctgattg aacagcaggc tgttatcgcc gcgctgtaat
    14461 caaaacacag tgatgaaaac gaaggccgga gcatgctccg gcctttttta tctcttacag
    14521 aaatggtaaa gaaggcataa ttccccgtga aatactggct aagaagcctt tatctggttg
    14581 ttcttcttta ttgattaaag ga
//
LOCUS       DADMJB010000102        14557 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.102, whole genome shotgun sequence.
ACCESSION   DADMJB010000102 DADMJB010000000
VERSION     DADMJB010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14557
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.102"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..209)
                     /locus_tag="JN078_002708"
     CDS             complement(<1..209)
                     /locus_tag="JN078_002708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HAY9041859.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA
                     RAFDQIDNAPEEKARGITINTSHVE"
     gene            complement(280..2394)
                     /gene="fusA"
                     /locus_tag="JN078_002709"
     CDS             complement(280..2394)
                     /gene="fusA"
                     /locus_tag="JN078_002709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020455498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HAY9041860.1"
                     /translation="MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH
                     DGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKT
                     RLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEW
                     HQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQ
                     AMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLT
                     FFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVT
                     TGDTLCDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTD
                     EESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQ
                     SGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPL
                     AGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETP
                     EENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTM
                     EFLKYDEAPSNVAQAVIEARGK"
     gene            complement(2491..2961)
                     /gene="rpsG"
                     /locus_tag="JN078_002710"
     CDS             complement(2491..2961)
                     /gene="rpsG"
                     /locus_tag="JN078_002710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006714698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HAY9041861.1"
                     /translation="MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVY
                     SALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMR
                     WIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW"
     gene            complement(3058..3432)
                     /gene="rpsL"
                     /locus_tag="JN078_002711"
     CDS             complement(3058..3432)
                     /gene="rpsL"
                     /locus_tag="JN078_002711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003852912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HAY9041862.1"
                     /translation="MATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGAL
                     DCSGVKDRKQARSKYGVKRPKA"
     gene            complement(3558..3845)
                     /gene="tusB"
                     /locus_tag="JN078_002712"
     CDS             complement(3558..3845)
                     /gene="tusB"
                     /locus_tag="JN078_002712"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusB"
                     /protein_id="HAY9041863.1"
                     /translation="MLHTLHRSPWLTDFAALLRLLSEGDELLLLQDGVTAAVDGNRYL
                     ESLRNAPIKVYALNEDLIARGLTGQISNDIIPIDYTDFVRLTVKHSSQMAW"
     gene            complement(3853..4212)
                     /gene="tusC"
                     /locus_tag="JN078_002713"
     CDS             complement(3853..4212)
                     /gene="tusC"
                     /locus_tag="JN078_002713"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusC"
                     /protein_id="HAY9041864.1"
                     /translation="MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIADGV
                     FQLLSGQKPDAVLARDYIATFKLLGLYDIEQCWVCAASLRERGLDPQTPFVVEATPLE
                     ADALRRELANYDVILRF"
     gene            complement(4212..4598)
                     /gene="tusD"
                     /locus_tag="JN078_002714"
     CDS             complement(4212..4598)
                     /gene="tusD"
                     /locus_tag="JN078_002714"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusD"
                     /protein_id="HAY9041865.1"
                     /translation="MRFAIVVTGPAYGTQQASSAFQFAQALIVEGHELSSVFFYRGGV
                     YNANQLTSPASDEFDLVRGWQQLNAQHGVALNICVAAALRRGIVDETEAGRLGLASSN
                     LQPGFTLSGLGALAEASLTCDRVVQF"
     gene            complement(4598..5320)
                     /locus_tag="JN078_002715"
     CDS             complement(4598..5320)
                     /locus_tag="JN078_002715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709120.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HAY9041866.1"
                     /translation="MSRSLLTNETSELDLLDQRPFDQTDFDILKSYEAVVDGLAMLIG
                     SHCEIVLHSLQDLKCSAIRIANGEHTGRKIGSPITDLALRMLHDMTGADSSVSKCYFT
                     RAKSGVLMKSLTIAIRNREQRVIGLLCINMNLDVPFSQIMSTFVPPETPDVGSSVNFA
                     SSVEDLVTQTLEFTIEEVNADRNVSNNAKNRQIVLNLYEKGIFDIKDAINQVADRLNI
                     SKHTVYLYIRQFKSGDFQGQDK"
     gene            complement(5487..6299)
                     /gene="fkpA"
                     /locus_tag="JN078_002716"
     CDS             complement(5487..6299)
                     /gene="fkpA"
                     /locus_tag="JN078_002716"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003827768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HAY9041867.1"
                     /translation="MKSLFKVTLLATTMAVALHAPITFAAEAAKPATTADSKAAFKND
                     DQKSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTL
                     QAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEA
                     PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLV
                     IPPELAYGKAGVPGIPPNSTLVFDVELLDVKPAPKADAKPEADAKAADSAKK"
     gene            6520..6738
                     /locus_tag="JN078_002717"
     CDS             6520..6738
                     /locus_tag="JN078_002717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein SlyX"
                     /protein_id="HAY9041868.1"
                     /translation="MQDLSLEARLAELESRLAFQESTIEELNVTVTAHEMEMAKLRDH
                     LRLLTEKLKASQPSNIASQAEETPPPHY"
     gene            complement(6787..7377)
                     /gene="slyD"
                     /locus_tag="JN078_002718"
     CDS             complement(6787..7377)
                     /gene="slyD"
                     /locus_tag="JN078_002718"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HAY9041869.1"
                     /translation="MKVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISG
                     LETALEGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQ
                     GPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHH
                     DHDHDGCCGGHGHDHGHEHGGEGCCGGKGNGGCGCH"
     gene            complement(7472..7672)
                     /locus_tag="JN078_002719"
     CDS             complement(7472..7672)
                     /locus_tag="JN078_002719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheV family putative metal-binding protein"
                     /protein_id="HAY9041870.1"
                     /translation="MAIRKRFIAGAKCPACQAQDSMAMWRENNIDIVECVKCGHQMRE
                     ADKEARDHVRKDEQVIGIFHPD"
     gene            complement(7682..9487)
                     /gene="kefB"
                     /locus_tag="JN078_002720"
     CDS             complement(7682..9487)
                     /gene="kefB"
                     /locus_tag="JN078_002720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     protein KefB"
                     /protein_id="HAY9041871.1"
                     /translation="MEGSDFLLAGVLFLFAAVAAVPLASRLGIGAVLGYLLAGIAIGP
                     WGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAALL
                     AGLLMLTDFAWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAV
                     IPALALVPLLAGSADEHFDWMKIGMKVLAFVGMLIGGRYLLRPVFRFIAASGVREVFT
                     AATLLLVLGSALFMDALGLSMALGTFIAGVLLAESEYRHELETAIDPFKGLLLGLFFI
                     SVGMSLNLGVLYTHLLWVVISVVVLVAVKILVLYLLARLYGVRSSERMQFAGVLSQGG
                     EFAFVLFSTASSQRLFQGDQMALLLVTVTLSMMTTPLLMKLVDKWLSRQFNGPEEEDE
                     KPWVNDDKPQVIVVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGD
                     ATQVDLLRSAGAEAAESIVITCNEPEDTMKLVEICQQHFPHLHILARARGRVEAHELL
                     QAGVTQFSRETFSSALELGRKTLVTLGMHPHQAQRAQLHFRRLDMRMLRELIPMHADT
                     VQISRAREARRELEEIFQREMQQERRQLDGWDEFE"
     gene            complement(9487..10038)
                     /gene="kefG"
                     /locus_tag="JN078_002721"
     CDS             complement(9487..10038)
                     /gene="kefG"
                     /locus_tag="JN078_002721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709126.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     ancillary protein KefG"
                     /protein_id="HAY9041872.1"
                     /translation="MSQPAKVLLLYAHPESQDSVANRVLLKPATQLSNVTVHDLYAHY
                     PDFFIDIPREQALLREHEVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNQLAG
                     KYWRNVITTGEPESAYRYDALNRYPMSDVLRPFELAAGMCRMHWLSPIIIYWARRQSA
                     KELANHARAYGDWLANPLSPGGR"
     gene            10169..12082
                     /locus_tag="JN078_002722"
     CDS             10169..12082
                     /locus_tag="JN078_002722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAY9041873.1"
                     /translation="MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLL
                     ALLKNEISADGGSYTFPGSWQLAWVNQETPALSQAALEYVIDGDREYRQLEAQLHDAN
                     ERNDGHAIATIHGKLDAIDAWSIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL
                     AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIH
                     IEQQSMFEYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQA
                     QSRIKMLERMELIAPAHVDNPFRFSFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLN
                     LVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEYLRADE
                     SPIQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPN
                     LLLLDEPTNHLDLDMRQALTEALIEFEGALVVVSHDRHLLRSTTDDLYLVHDRKVEPF
                     DGDLEDYQQWLSDVQKQENQTDEAPKENANSAQARKDQKRREAELRAQTQPLRKEIAR
                     LEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQ
                     EQLEQMLLEGQSN"
     gene            12082..13104
                     /locus_tag="JN078_002723"
     CDS             12082..13104
                     /locus_tag="JN078_002723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HAY9041874.1"
                     /translation="MAQITTTDANEFSSSAEFTPMRGFSNCHLQTMLPRLFRRQVKFT
                     PYWQRLELPDGDFVDLAWSEAPAQARHKPRLVIFHGLEGSLNSPYAHGLVEAAQKRGW
                     LGVVMHFRGCSGEPNRMHRIYHSGETEDASWFLRWLQREFGHAPTAAVGYSLGGNMLA
                     CLLAKEGNDLPVDAAVIVSAPFMLEACTYHMEKGFSRVYQRYLLNLLKANAARKLAAY
                     PGTLPINLAQLKSVRRIREFDDLITARIHGYADAIDYYRQCSAMPMLNRIAKPTLIIH
                     AKDDPFMDHQVIPKPESLPSQVEYQLTEHGGHVGFIGGTLLHPQMWLESRIPDWLTTY
                     LEAKSC"
     gene            13098..13316
                     /locus_tag="JN078_002724"
     CDS             13098..13316
                     /locus_tag="JN078_002724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheU family protein"
                     /protein_id="HAY9041875.1"
                     /translation="MLIPWQDLSPETLENLIESFVLREGTDYGEHERTLEQKVADVKR
                     QLQCGEAVLVWSELHETVNIMPRSQFRE"
     gene            13370..14239
                     /locus_tag="JN078_002725"
     CDS             13370..14239
                     /locus_tag="JN078_002725"
                     /EC_number="2.7.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribulokinase"
                     /protein_id="HAY9041876.1"
                     /translation="MSAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNLHAAEVEGDSF
                     HRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFIEYGQSGKGKSRKYLHTYD
                     EAVPWNQVPGTFTPWQPLPEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLE
                     WIQKLIRDTSERGHSREAVMDSVVRSMEDYINYITPQFSRTHLNFQRVPTVDTSNPFA
                     AKGIPSLDESFVVIHFRNLEGIDFPWLLAMLQGSFISHINTLVVPGGKMGLAMELIML
                     PLVQRLMEGKKIE"
     gene            complement(14294..>14557)
                     /locus_tag="JN078_002726"
     CDS             complement(14294..>14557)
                     /locus_tag="JN078_002726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HAY9041877.1"
                     /translation="SAIDVVSILQKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIV
                     TGRDLKDAAVARAVDLSAEKYCSVALMLEKAVNITHSYEVVAA"
BASE COUNT         3598 a         3969 c         3585 g         3405 t
ORIGIN      
        1 tattcaacgt gagaagtgtt gatggtgata ccacgagctt tttcttccgg cgcgttatcg
       61 atctggtcga atgcacgagc agcaccgccg taggttttag ccagtacggt ggtgattgca
      121 gcggtcagag tagttttacc gtggtcaacg tggccgatag taccaacgtt aacgtgcggt
      181 tttgtacgtt caaatttttc tttagacacg gctatattcc ttactatagt gctctcccct
      241 tcaggagaga gcacgggact ttggtattaa cccttaggct tatttaccac gggcttcaat
      301 tacggcctga gcaacgttac tcggcgcttc atcatacttc aggaattcca tagtgtatga
      361 tgcacgacct ttggtcagag aacgcagctg agttgcgtat ccgaacattt cagacagcgg
      421 tacttcagcg tggatcttaa cgccagtaac ttcagattcc tgacctttga gcataccacg
      481 acgacggctc aagtcaccga taacgtcacc ggtgttctct tccggagttt ctacttcaac
      541 cttcatgatc ggctcaagca gaactggttt cgctttctta aagccttctt taaaggcgat
      601 agaagcagcc agtttaaacg ccagttcaga ggagtcaacg tcatggtaag aaccgaagtg
      661 cagacgaata cccatgtcta ctaccgggta gcctgccagc ggacctgctt tcagctgttc
      721 ctggatacct ttatcaacgg ccgggatgta ttcgccaggg attacaccac ctttaatgtc
      781 gttgatgaac tcgtagcctt tcgggtttga acccggctcc agcgggtaca tgtcgataac
      841 aacatgacca tactgaccac gaccaccaga ctgtttcgcg tgtttacctt caacatcggt
      901 aactttctgg cggatagttt cacggtaagc aacctgcggt ttacctacgt tcgcttcaac
      961 gttgaattca cgcttcatac ggtcaacgat gatgtcgagg tgcagttcgc ccatacccgc
     1021 gatgattgtc tggttagatt cttcgtcagt ccatacacgg aaagacgggt cttctttagc
     1081 cagacggccc agagccagac ccattttttc ctggtcagct ttggttttcg gttcaactgc
     1141 gatggagatt accggctcag ggaattccat acgttccaga atgatcggcg catccgggtc
     1201 acacagggtg tcaccagtgg ttacgtcttt cagaccgata gcagcagcga tgtcgcccgc
     1261 gcgaacttct ttgatctctt cacgtttgtt agcgtgcatc tgaacgatac gaccgaaacg
     1321 ctcacgtgca gctttcacgg agttcagtac ggtatcacca gagttaacca caccggagta
     1381 aacacggaag aaggtcaggt taccaacaaa cgggtcggta gcgattttga acgccagtgc
     1441 agagaacggc tcgtcatcac ttgcgtgacg ttcagccgga gtgtctttac cgtcgtccag
     1501 gataccgttg atcgcaggta cgtcaaccgg ggatggcagg taatcaatta ccgcatccag
     1561 catcgcctga acacctttgt tcttgaacgc agaaccacag gttaccagga tgatttcgtt
     1621 gttcagaacg cgctgacgca gagcaccttt gatttctgct tcagtcagtt cttcaccacc
     1681 caggtatttt tccatcagct cttcagaagc ttcagctgcg gattcgatca ggttctggtg
     1741 ccattcgtta gccagttcaa ccatgtctgc cgggatatct tcgtattcga aggttacgcc
     1801 ctggtcagcg tcgttccagt taatagcttt cattttcacc aggtcaacaa caccggtgaa
     1861 atgttcttca gcaccaatcg ccagctgcag cggaaccgga ttcgcgccca gacgggtttt
     1921 gatctggtta acaactttca ggaagttcgc acccatgcgg tccattttgt taacgaacgc
     1981 aatgcgcgga actttatatt tgtttgcctg acgccatacg gtttcagact gcggctgaac
     2041 accaccaact gcgcagtaaa ccattaccgc accatcgaga acacgcatgg aacgttctac
     2101 ttcgattgtg aagtcaacgt gccccggggt gtcgatgatg ttgatgcgat gcggctcata
     2161 ctgcttagcc ataccagacc agaatgcagt agtcgcagcg gaagtgatgg taataccacg
     2221 ttcctgctcc tgctccatcc agtccatggt tgcagcgccg tcatgaactt cacctatttt
     2281 atggtttaca ccggtgtaga acagaatacg ttcggtagta gtggttttac cggcgtcgat
     2341 gtgcgcactg ataccgatgt tacggtagcg tgcgatgggt gttgtacgag ccatttgttt
     2401 cctcgtttat cttttaggcg ttcaatttaa gtagcccaaa gcgggctgct tactggaagc
     2461 gcccgcctgg tgactaaaac tccgaaggga ttaccaacgg tagtgtgcga acgccttgtt
     2521 ggcttcggcc atacggtgaa cgtcttcacg tttcttaact gcagtacctt tgttttctgc
     2581 agcatcagaa agttcgttcg ccaggcgcag agccatggat ttatcaccgc gtttacgagc
     2641 agcttcaacg atccaacgca ttgccagagc attacgacga accggacgga cttcaactgg
     2701 tacctgataa gtagaaccac caacgcggcg agacttaact tctacagtcg ggcgcacgtt
     2761 ttcgagagct acttcgaatg cttccagttc agatttacca gagcgctgag ccagggtctc
     2821 cagcgcgctg tatacgatag attcagcagt agatttttta ccatctacca tcaggatatt
     2881 tacaaattta gccagcagtt ctgatccgaa cttcggatcc ggcagaattt tacgctgacc
     2941 aatgacgcga cgacgtggca tggaaatact ccgttgttaa ttcaggattg tccaaaactc
     3001 tacgagttta gtttgacatt taagttaaaa cgtttggcct tacttaacgg agaaccatta
     3061 agccttagga cgcttcacgc catacttgga acgagcctgc ttacggtctt taacgccgga
     3121 gcagtcaagc gcaccacgta cggtgtggta acgaacaccc gggaggtctt taacacgacc
     3181 gccacggatc aggatcacgg agtgctcctg caggttgtga ccttcaccac cgatgtagga
     3241 agtcacttcg aaaccgttag tcagacgaac acggcatact ttacgcagcg cggagttcgg
     3301 ttttttagga gtggtagtat atacacgagt acatacgcca cgtttttgcg ggcatgcttc
     3361 cagcgcaggc acgttgcttt tcgcaacttt gcgagcacgt ggtttgcgta ccagctggtt
     3421 aactgttgcc attaaatagc tcctggtttt agcttttgct tcgtaaacac gtaataaaac
     3481 gtcctcacac aatatgagga cgccgaattt tagggcgatg ccgaaaaggt gtcaagaaat
     3541 atacaacgat cccgccatca ccaggccatc tggctggagt gcttaaccgt aagtctgacg
     3601 aaatcagtat agtcaatggg aatgatgtcg ttcgaaattt gaccagtcaa accgcgggca
     3661 ataaggtctt cgttcagggc atagacctta atgggggcat tacgcagact ttcaaggtag
     3721 cggttaccgt caactgcggc agttacgcca tcttgcaata atagcagttc gtctccttca
     3781 ctgagcagac gcagcagcgc agcaaaatcc gtcagccagg gtgaacgatg taacgtgtgc
     3841 agcataaacg cctcaaaacc tcaaaataac atcgtagttg gcgagttcgc ggcgtaaggc
     3901 atctgcttcg agcggcgtgg cttcgacaac aaagggtgtc tgcggatcta acccgcgttc
     3961 gcgcagtgaa gccgcacaaa cccagcactg ttcaatgtcg tacagaccca acaatttaaa
     4021 agtggcaatg taatcacgcg ccagcactgc atcgggcttt tgtcctgaca gcagctgaaa
     4081 aacgccatca gcaataaaga agacggccag atcgtcagtt aatgcggaag ttgccagtaa
     4141 agcatctaaa ccttcccgac cagcagctgt accatgaggt gcagtagaaa aaacaaacgc
     4201 aattcgtttc atcagaactg taccaccctg tcacaggtca gcgaggcttc cgccagcgcg
     4261 ccaagtccgc ttaaggtaaa tcccggctga aggtttgacg aagccagccc cagccttcct
     4321 gcttcagttt catcgacgat accgcggcgt aacgctgccg ctacgcagat attcagcgcc
     4381 acaccatgtt gcgcattcaa ctgttgccag ccgcgcacaa ggtcaaattc gtcacttgcc
     4441 ggtgaggtca attggttagc gttatagacc cctccccgat agaaaaagac gctgcttaac
     4501 tcatggcctt ctactatcag cgcctgcgca aactgaaaag cactactcgc ctgttgcgta
     4561 ccgtatgctg gcccggtcac cacgatggca aaacgcatta cttatcttgc ccctggaaat
     4621 caccgctctt gaactggcgg atgtagagat agacagtgtg tttggagatg ttcaggcggt
     4681 cagcaacctg gttgatcgca tctttaatat cgaagatccc tttctcgtag agattcagca
     4741 cgatctgacg atttttggcg ttattagaaa cattgcgatc ggcattcact tcttcgatgg
     4801 tgaactccag cgtttgggta accagatctt caacagaaga ggcaaagttg acgcttgaac
     4861 cgacatccgg ggtttctggc ggcacaaaag tgctcataat ctgcgagaag ggaacatcaa
     4921 gattcatatt gatgcacagc agaccaatta cacgctgttc gcggttacga atcgcgatag
     4981 tcagggactt cattaatacg ccgcttttgg cgcgagtaaa gtagcattta gaaacgctgc
     5041 tatccgctcc cgtcatatcg tgcagcatac gtagcgccag gtcagtaatt ggcgaaccaa
     5101 tcttccggcc tgtatgttca ccgttagcaa tgcgaatggc tgaacatttt agatcctgca
     5161 aagagtgcaa aacgatttca cagtgggagc caataagcat cgctaacccg tccaccaccg
     5221 cttcgtagga tttcagaata tcaaaatcgg tctggtcgaa aggacgttga tccagtaaat
     5281 ccaactcact ggtttcgttg gttaaaagcg acctggacat gaaaaaaaac actccttttc
     5341 aggagcctgt cgttaacttt tcagggcagg ctcattaatg atgcgggtaa ctaaattaat
     5401 acagcggagg ttccgctttc cagcactaat tatatccggc ctgtaataaa aaaaccgccg
     5461 cctggtcagg cggcggttct taatgcttat tttttagcag aatctgcggc tttcgcatca
     5521 gcttccggct ttgcatcagc cttcggtgct ggtttcacat ccagcagctc tacgtcaaac
     5581 accagggtag aattcggtgg gatccccgga acacccgctt tgccgtaagc cagttctggt
     5641 ggaataacca gtttgatctt accgcctttc ttgatgttct tcagaccttc tgtccaaccc
     5701 gggataacac cgtccagacg gaaagaaagc ggttcaccac gggtgtaaga gttgtcgaac
     5761 tctttaccgt cgatcagcgt acctttgtag ttcactacaa cagtatcgct gtctttcggt
     5821 gcttcgcctt taccggcttc tactacctga taaaccagac cagttgaaga ggttttcaca
     5881 cctttctctt tggcaaattt ctcgcggtac tctttacctt ttgcttcgtt atcagccgcg
     5941 tctttttcca tcttcgcctg agcagaagac ttcacgcgag cttcgaatgc ttgcagagtc
     6001 tgttcgatct cttggtcgga gagtttgctc ttatcagcaa atgcatcctg aacaccagcg
     6061 atcagctgat ctttatccag tttgatgccc agtttttctt gttctttaag agagttttcc
     6121 atgtaacgac ccagcgaagc acccagtgca taagctgatt tctgatcgtc atttttgaac
     6181 gctgctttgc tgtcagcagt tgtagcaggt tttgcagctt cagcagcaaa agtgattggt
     6241 gcatgcaggg caacggccat tgtggtcgcc agcagcgtta ctttaaacag tgatttcatc
     6301 catatctcca ggatcggggc atctcacccc agggttaact attatcagaa gggtactata
     6361 aagcgttgtc gaacaaatct acatacagac acgccctatt atcatctatt ttcagactct
     6421 ttttgtttaa attagtttcg atgaccgcga aatgagtgct gtctcgggca gcaaagttaa
     6481 gtagaatccg cggcaaccat tcgacaaaag aggtgaatca tgcaggattt atcattggaa
     6541 gcacgcctgg cagagctgga gagccgactg gcttttcagg aaagcaccat tgaagaactg
     6601 aacgtcacgg tgaccgctca tgaaatggag atggcgaaac tgcgcgatca tctgcgtctg
     6661 ctgaccgaga agttaaaagc cagccagccg tcgaacatcg cgtcgcaggc tgaagaaacg
     6721 ccaccgccac attattgagg cgtaaaaaaa gcggggattc cccgcttttt tgtcaccttt
     6781 tcggtattag tggcaaccac aaccgccgtt gcctttaccg ccacagcagc cttcgccacc
     6841 gtgttcatga ccgtgatcgt ggccatgacc gccgcagcaa ccgtcgtggt cgtgatcgtg
     6901 gtgatgatcg tgcgcgccgt gaacgtgacc atgagccagt tcttcttcgg tcgcttcacg
     6961 aatcgccaca acctcaacgt tgaatttcag gttctgaccg gccagcatgt ggttaccatc
     7021 aaccactacg tgatcgtctt caaccgcagt gatttcaacc ggtaccggcc cctggtcggt
     7081 ttcagccagg aaacgcatac ctacctgcag ttcatcaacg cccataaata cgtctttagg
     7141 aacacgttgc accaggtttt cgtcgtactg accgtaagcg tcgttcgcgc caacagcgac
     7201 atcaaatttg tcgccaactt catgaccttc cagcgccgtt tccaggccag agatcaggga
     7261 accgtgacca tgcaggtagt ccagcggcgc actcaccgga gactcatcaa ccaacacacc
     7321 gtcttctgta cgtacctgat aggccaggct gaccaccagg tcttttgcta ctttcatgat
     7381 atctcctgag catgggaaga atagtggcgc agattgtagc ggaattctgc agccgtgtac
     7441 tcactagctt aaaaaaactc ggcgcatatc gctagtccgg atgaaaaatc ccgatcactt
     7501 gctcatcttt gcgaacgtga tcgcgggctt ctttgtctgc ttctcgcatc tgatgtccgc
     7561 acttaacgca ttcaacaata tcaatattat tttcgcgcca catcgccatt gaatcctgtg
     7621 cctgacaggc cgggcatttt gcgcccgcaa taaaacgttt tcggattgcc atctttaccc
     7681 tctactcaaa ttcatcccag ccgtccagct ggcgtcgttc ttgttgcatt tcacgctgga
     7741 aaatctcttc cagttcgcgt cgggcttccc tggcgcgaga aatttgtaca gtatcggcat
     7801 gcattgggat gagctctcgc agcatccgca tatccaggcg gcgaaaatgc agttgcgccc
     7861 gctgcgcctg atgcggatgc atcccaagcg tgaccaaagt cttgcgcccc agctctaacg
     7921 cactggagaa tgtttcacgg gaaaactgcg tcacccctgc ctgtaataac tcatgcgctt
     7981 ccacacgtcc gcgcgctcgc gcaagaatat gcaaatgcgg aaagtgctgc tggcatattt
     8041 ccaccagctt catggtgtct tccggctcgt tacaggtaat gacgatagac tcagcggcct
     8101 ctgcacccgc agaacgtaat agatcgacct gcgtggcgtc gccgtaataa actttgtagc
     8161 catatttacg catcaggtta acggcgctga tatcccgctc cagcacggta atgcgcattt
     8221 tatttgccat cagcaaacga ccaatcacct gaccaaaacg cccgaagccc acgacaatga
     8281 cctggggttt atcatcgttg acccacggtt tttcgtcttc ttcttccggt ccgttaaact
     8341 ggcgggataa ccatttatcc accagcttca tcagcaacgg cgtggtcatc atggaaagcg
     8401 tcaccgtcac cagcaacagc gccatctggt cgccctggaa taaacgttgt gaagaagcgg
     8461 tagaaaagag gacaaaggca aactcaccgc cctgactcaa cacgccagca aactgcatcc
     8521 gctctgagct acgcacgcca tacaatcgcg ccagcagata cagcacgaga attttcaccg
     8581 ccaccagcac aaccacgctt atcactaccc acaacagatg ggtataaagc accccgaggt
     8641 tgagcgacat gccgacagag ataaagaaca aaccgagcag caagcctttg aagggatcga
     8701 tagccgtttc cagttcatgg cgatattcac tttccgccag cagcacgccc gcaataaatg
     8761 taccgagcgc catcgacagc cccagcgcat ccataaacaa tgcggaaccc aacaccagca
     8821 gcagcgtcgc ggcggtgaac acttcccgca cgccagaagc tgcaataaag cggaataccg
     8881 gacgcagtaa atagcgccca ccaatcagca tgccgacaaa cgccagcacc ttcatgccga
     8941 tcttcatcca gtcgaaatgt tcgtctgccg accccgccaa caacggcact aacgccagtg
     9001 ctgggatcac tgccagatcc tgaaacagca gaaccgaaaa cccgagctgg ccggattcgc
     9061 tgcgattcat ccctttctca cgcatcaatt gcaacgccat tgcagttgaa gacatcgcaa
     9121 ggccaatgcc accgaccacc gccgcctgcc aggcgaaatc cgtcagcatc aataatcccg
     9181 ccagcaacgc cgcgcttaac agcacctgtg ccgcgcctac gccaaaaatc gaacgccgca
     9241 gttgccaaag tttggaggga ttcaactcaa ggccgatgat aaacatcagg aataccacgc
     9301 cgagttccga aaagtggagg atctcatcga cgtcgctaat aaaccccagc ccccacgggc
     9361 caattgcaat ccctgccagc aaatatccca acacagcgcc aatccccagc cgcgatgcca
     9421 acggcaccgc agccaccgcc gcgaagagaa acagcactcc tgcgagtaaa aaatcggaac
     9481 cttccatcag cggcctcctg gagacagcgg atttgccagc cagtcaccgt aggctctggc
     9541 gtggttcgcc agctcctttg cgctttgccg tctcgcccag taaataatga tgggacttaa
     9601 ccaatgcatc cggcacatgc ccgccgccag ttcaaagggg cgcagcacat cgctcatcgg
     9661 gtagcgattc agcgcgtcat aacggtaagc actttccggc tcgccggtgg taatcacgtt
     9721 acgccagtac tttcccgcca gttggtttcc tcccggcccg ctggcaaaac cacgacttaa
     9781 tacccggtcc agccactctt tcagtagcgc cgggcagcta taggtataaa gaggatgctg
     9841 aaagacaatc acctcgtgct cgcgcagtaa tgcctgctca cgggggatat caataaaaaa
     9901 atcgggatag tgcgcgtaaa ggtcgtgcac ggtaacattg ctgagctgcg tggccggttt
     9961 aagcagtacc cggtttgcca ccgagtcctg agattccgga tgggcataca gcagcaaaac
    10021 tttcgctggc tgagacatca tccccctccc ggtatggttt ttgtgtatag tcgctgtttt
    10081 gggctaccat tgcgcccggt gcggcagctc gcccatacat tacattatca taatgataag
    10141 ttaacatagt ctgaacatac ggcgccttat gattgttttc tcctcgttac aaattcgtcg
    10201 cggcgtgcgc gtcctgctgg ataatgccac cgccaccatc aaccctgggc agaaagtcgg
    10261 cctggtgggt aaaaacggct gtggtaaatc taccctgctg gcattgctga aaaatgaaat
    10321 cagcgccgac ggcggcagct acacctttcc gggaagctgg caactggcgt gggtgaatca
    10381 ggaaacgccg gcgttatcgc aagcggcgct ggaatatgtc attgacggcg accgtgaata
    10441 tcgtcaactg gaagcgcagc tgcacgacgc caacgaacgt aacgacgggc acgccattgc
    10501 gaccattcat ggcaagctgg atgctattga cgcatggagt attcgctccc gtgccgccag
    10561 cctgctgcac ggcctcggtt tcagcaatga acaactggag cgcccggtaa gtgatttctc
    10621 cggtggctgg cgtatgcgtc ttaaccttgc ccaggcgctg atttgccgtt cagacttgct
    10681 gctgctcgac gaaccgacta accacctcga tctcgatgcc gttatctggc tggaaaaatg
    10741 gttgaagagc tatcaaggca cgctgatcct gatctctcac gaccgcgact tcctcgatcc
    10801 gatcgttgat aaaattattc atatcgaaca acaaagcatg ttcgagtaca ccggcaacta
    10861 cagttcgttt gaagtacagc gcgccacccg tctggcgcaa caacaagcga tgtatgaaag
    10921 ccagcaggaa cgcgtggcac atctgcaaag ttatatcgac cgtttccgtg ccaaagccac
    10981 caaagcgaag caagcccaga gccgcattaa gatgcttgag cgtatggagc tgattgcccc
    11041 cgcgcacgtc gacaacccgt tccgctttag cttccgcgcg ccggaaagcc tgccaaatcc
    11101 gttactgaag atggaaaaag tcagcgcggg ctatggcgat cgcattattc tcgactcgat
    11161 taaactgaac ctggtgcccg gctcgcgcat tggtctgtta ggccgcaacg gcgcgggtaa
    11221 atcgacatta atcaaactgt tagccggtga acttgcgcca gtcagcggtg aaattggtct
    11281 ggcgaaaggg atcaagctcg gctacttcgc ccagcatcaa cttgaatacc tgcgcgccga
    11341 cgaatcacct attcaacatc tggcacgttt agcgccgcag gagctggaac aaaaactgcg
    11401 tgactacctc ggcggctttg gtttccaggg cgataaagta accgaagaaa cgcgccgctt
    11461 ctccggtggg gaaaaagccc gcctggtgct ggcattaatt gtctggcagc gtccgaatct
    11521 gctgctgctc gacgaaccga ctaaccacct tgacctcgac atgcgtcagg cactcaccga
    11581 agcattaatc gagtttgaag gcgcgctggt tgtcgtttcg cacgaccgtc atttgctgcg
    11641 ttccaccact gacgatctct acctggttca cgatcgtaaa gtcgaaccgt tcgacggcga
    11701 tctggaagat tatcaacagt ggttgagcga cgtacaaaag caggaaaacc agaccgacga
    11761 agcgccaaaa gagaacgcga acagcgccca ggcacgtaaa gatcagaagc gtcgggaagc
    11821 ggagctgcgt gcgcaaaccc agccgctgcg taaagagatt gcccgtctgg aaaaagagat
    11881 ggagaagctg aacgcgcaac tggcgcaggc ggaagagaaa ctcggcgaca gcgaactgta
    11941 tgaccagagc cgtaaagcgg agttgaccgc ctgcctgcaa cagcaagcca gcgccaaatc
    12001 cggcctggaa gagtgcgaaa tggcgtggct ggaagcccag gagcagcttg agcagatgct
    12061 gctggaaggc caaagcaact gatggcgcag ataacgacga ccgatgccaa tgaattcagc
    12121 agcagtgctg aattcacccc tatgcgcggc tttagcaatt gtcatctaca aactatgctg
    12181 ccgcgtttgt ttcgtcgtca ggtgaaattc accccgtact ggcagcggct ggagttgccc
    12241 gacggcgatt ttgtcgatct cgcgtggagt gaagcccctg cacaggctcg gcataaaccg
    12301 cgtttagtga tatttcacgg gctggaaggc agtctcaata gcccttacgc ccacggtctg
    12361 gttgaggcgg cgcaaaagcg cggctggctg ggcgtggtga tgcattttcg cggatgcagc
    12421 ggtgaaccaa accgtatgca ccgcatttac cattcgggcg aaaccgaaga cgccagttgg
    12481 tttttacgct ggctgcaacg cgaatttggt catgcgccaa cggctgccgt cggctattcg
    12541 ctcggcggta atatgctggc ctgtttgctg gcaaaggaag gcaatgatct cccggttgat
    12601 gcggcggtga ttgtctctgc gccgtttatg ctggaagcct gtacctatca tatggaaaag
    12661 ggcttttccc gcgtttatca gcgttacttg ctgaacctgt taaaagccaa tgccgcgcgc
    12721 aagctggcag cctaccccgg aacgctgccg attaatctcg cgcagttaaa atcggtacgt
    12781 cgcatccgtg aatttgacga tctaatcacc gccagaattc acggctacgc cgacgctatc
    12841 gactattatc gtcagtgtag cgccatgccg atgctgaacc ggatcgccaa accgacgctg
    12901 attattcacg ccaaagacga tccgtttatg gatcatcagg tgatcccgaa accggaaagt
    12961 ctcccctcgc aggtggagta tcaactgact gaacatggcg gtcatgttgg ctttattggc
    13021 ggtacattac ttcatccgca aatgtggctg gagtcacgca ttcctgactg gttaacaacg
    13081 tatctggagg cgaaatcatg ttgattccgt ggcaagacct ctcccccgaa acgctggaaa
    13141 atttaattga aagctttgtg ttacgtgaag gcaccgatta tggtgaacat gagcgtacac
    13201 ttgaacagaa agtcgccgac gtcaaacgcc agctacagtg cggagaagcg gtgctggtat
    13261 ggtcggagct gcacgaaacg gtcaatatta tgccgcgcag tcagtttcgc gaataacctg
    13321 caaccgtcgg cggacgagat aataatgata gctaagtcat ggagttacta tgtctgccaa
    13381 acatccggtc attgcggtaa caggatccag cggcgcgggg accaccacca ccagcctcgc
    13441 gtttcgtaaa atattcgcgc agttaaatct gcatgcagct gaggtggaag gcgacagttt
    13501 tcaccgttac acccgcccgg aaatggacat ggcgatccgc aaagcgcgcg acgccgggcg
    13561 gcatatcagc tacttcggcc ccgaagcgaa cgacttcggc ctgctggaac aaaccttcat
    13621 tgaatacggt cagagcggca aagggaaatc tcgcaaatat ctgcatacct acgacgaagc
    13681 cgtaccgtgg aatcaggtac cgggaacatt caccccctgg caacctttac cagaacccac
    13741 tgatgtactg ttttatgaag gtttacacgg cggcgtagtc acgccacagc ataacgttgc
    13801 gcagcatgtg gacttactgg tcggcgtagt gcctatcgtt aaccttgagt ggattcaaaa
    13861 actgatccgc gacaccagcg agcgcgggca ctcacgagaa gcagtgatgg actcagtagt
    13921 gcgttcaatg gaagactata tcaactacat cacaccgcag ttttcccgca cccatcttaa
    13981 cttccagcgc gttcccaccg tcgacacttc aaacccgttc gcggcaaaag gtatcccgtc
    14041 gctggatgaa agctttgtgg tgatccattt tcgtaatctg gaagggatcg atttcccctg
    14101 gctgctggcg atgttgcaag gctcattcat ttcccacatc aatacgttag tggtaccggg
    14161 cggcaaaatg ggtctggcaa tggaattaat tatgctgccg ctggtgcaac gattgatgga
    14221 aggaaagaaa atcgagtaac tctgctatta cgccggataa aatactatcc ggcttcacaa
    14281 cgggatagtt aaatcacgcg gcaaccactt catacgagtg agtaatattc accgcttttt
    14341 ccagcatcaa cgccactgaa caatatttct cggcagagag atcaaccgca cgcgcaaccg
    14401 ctgcgtcttt caggtcgcga ccggtgacga taaaatgcag attaatgtgc gtaaacaggc
    14461 gtggtgcctc ttcgcggcgt tcagaggtca attttacttc acaatcgacc acatcctgac
    14521 gccctttttg caggatcgaa accacatcga tggcact
//
LOCUS       DADMJB010000103        14503 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.103, whole genome shotgun sequence.
ACCESSION   DADMJB010000103 DADMJB010000000
VERSION     DADMJB010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14503)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14503)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14503
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.103"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..787)
                     /gene="fimH"
                     /locus_tag="JN078_002727"
     CDS             complement(<1..787)
                     /gene="fimH"
                     /locus_tag="JN078_002727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria D-mannose specific adhesin FimH"
                     /protein_id="HAY9041878.1"
                     /translation="MKRVITLFAVLLMGWSVNAWSFACKTANGTAIPIGGGSANVYVN
                     LAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSS
                     YPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNS
                     DDFQFVWNIYANNDVVVPTGGCDVSARDVTVTLPDYPGSVPIPLTVYCAKSQNLGYYL
                     SGTTADAGNSIFTNTASFSPAQGVGVQLTRNGTIIPANNTVSLG"
     gene            complement(807..1310)
                     /gene="fimG"
                     /locus_tag="JN078_002728"
     CDS             complement(807..1310)
                     /gene="fimG"
                     /locus_tag="JN078_002728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria minor subunit FimG"
                     /protein_id="HAY9041879.1"
                     /translation="MKWRKRGYLLAAILALASATIQAADVTITVNGKVVAKPCTVSTT
                     NATVDLGDLYSFSLMSAGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQG
                     TAQNIQLELQDDSGNTLNTGETKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQAVI
                     SITYTYS"
     gene            complement(1323..1853)
                     /gene="fimF"
                     /locus_tag="JN078_002729"
     CDS             complement(1323..1853)
                     /gene="fimF"
                     /locus_tag="JN078_002729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709916.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria minor subunit FimF"
                     /protein_id="HAY9041880.1"
                     /translation="MRNKPFYLLCAFLWLAVSRVLAADSTITIRGYVRDNGCSVAAES
                     TNFTVDLMENAAKQFNNIGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNANLLA
                     LENTVSAASGLGIQLLNEQQNQIPLNAPSSAISWTTLTPGKPNTLNFYARLMATQVPV
                     TAGHINATATFTLEYQ"
     gene            complement(1863..4499)
                     /gene="fimD"
                     /locus_tag="JN078_002730"
                     /pseudo
     CDS             complement(1863..4499)
                     /gene="fimD"
                     /locus_tag="JN078_002730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418737.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis usher protein FimD"
     gene            complement(4566..5291)
                     /gene="fimC"
                     /locus_tag="JN078_002731"
     CDS             complement(4566..5291)
                     /gene="fimC"
                     /locus_tag="JN078_002731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418736.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria chaperone FimC"
                     /protein_id="HAY9041881.1"
                     /translation="MSNKNANVRKSQEITFCLLAGILMFMAMMVAGRAEAGVALGATR
                     VIYPAGQKQVQLAVTNNDENSTYLIQSWMENADGVKDGRFIVTPPLFAMKGKKENTLR
                     ILDATNNQLPQDRESLFWMNVKAIPSMDKSKLTENTLQFAIISRIKLYYRPAKLALPP
                     DQAAEKLRFRRSANSLTLINPTPYYLTVTELNAGTRVLENALVPPMGESTVKLPSDAG
                     SNITYRTINDYGALTPKMTGVME"
     gene            complement(5328..5867)
                     /locus_tag="JN078_002732"
     CDS             complement(5328..5867)
                     /locus_tag="JN078_002732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418735.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HAY9041882.1"
                     /translation="MKRKRLFLLASLLPMFALAGNKWNTTLPGGNMQFQGVIIAETCR
                     IEAGDKQMTVNMGQISSNRFHAVGEDSAPVPFVIHLRECSTVVSERVGVAFHGVADGK
                     NPDVLSVGEGPGIATNIGVALFDDEGNLVPINRPPVNWKRLYSGSTSLHFIAKYRATG
                     RWVTGGIANAQAWFSLTYQ"
     gene            complement(5932..6480)
                     /gene="fimA"
                     /locus_tag="JN078_002733"
     CDS             complement(5932..6480)
                     /gene="fimA"
                     /locus_tag="JN078_002733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding
                     lipoprotein/fibrin-binding adhesin FimA"
                     /protein_id="HAY9041883.1"
                     /translation="MKIKTLAIVVLSALSLSSTAALAAATTVNGGTVHFKGEVVNAAC
                     AVDAGSVDQIVQLGQVRTASLAQEGATSSAVGFNIQLNDCDTNVASKAAVAFLGTAID
                     AGHTNVLALQSSAAGSATNVGVQILDRTGAALTLDGATFSEQTTLNNGTNTIPFQARY
                     YATGVATPGAANADATFKVQYQ"
     gene            complement(6957..7553)
                     /gene="fimE"
                     /locus_tag="JN078_002734"
     CDS             complement(6957..7553)
                     /gene="fimE"
                     /locus_tag="JN078_002734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria regulatory protein FimE"
                     /protein_id="HAY9041884.1"
                     /translation="MSKRRYLTGKEVQAMMQAVCYGATGARDYCLILLAYRHGMRISE
                     LLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVERWTLERANWKGADRTDAI
                     FISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYL
                     GHRNIRHTVRYTASNAARFAGLWERNNLINEKLKREEV"
     gene            complement(8031..8633)
                     /gene="fimB"
                     /locus_tag="JN078_002735"
     CDS             complement(8031..8633)
                     /gene="fimB"
                     /locus_tag="JN078_002735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria regulatory protein FimB"
                     /protein_id="HAY9041885.1"
                     /translation="MKNKADNKKRNFLTHSEIESLLKAANTGPHAARNYCLTLLCFIH
                     GFRASEICRLRISDIDLKAKCIYIHRLKKGFSTTPPLLNKEVQALKNWLSIRTSYPHA
                     ESEWVFLSRKGNPLSRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRL
                     IQDYLGHRNIRHTVWYTASNAGRFYGIWDRARGRQRHAVL"
     gene            10089..10805
                     /gene="nanC"
                     /locus_tag="JN078_002736"
     CDS             10089..10805
                     /gene="nanC"
                     /locus_tag="JN078_002736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313297.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminic acid outer membrane channel
                     NanC"
                     /protein_id="HAY9041886.1"
                     /translation="MKKAKILSGVLLLCFSSPLISQAATLDVRGGYRSGSHAYETRLK
                     VSEGWQNGWWASMESNTWNTIHDNKKENAALNDVQVEVNYAIKLDDQWTVRPGMLTHF
                     SSNGTRYGPYVKLSWDATKDLNFGIRYRYDWKAYRQQDLSSDMSRDNVHRWDGYVTYH
                     INSDFTFAWQTTLYSKQNDYRYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGV
                     YNGRDNLSENSYRIGVSFKL"
     gene            10825..11931
                     /locus_tag="JN078_002737"
     CDS             10825..11931
                     /locus_tag="JN078_002737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418730.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate epimerase"
                     /protein_id="HAY9041887.1"
                     /translation="MNKTITALAIMMASFAANASVLPETPVPFKSGTGAIDNDTVYIG
                     LGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNREGLTQ
                     VFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNE
                     AGKDSTAVDKINAYYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK
                     GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIF
                     AGGAGFKGSRENYQHGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW
                     NNSLLIIGGETAGGKAVTDSVLISVKDNKVTVQN"
     gene            11996..12976
                     /locus_tag="JN078_002738"
     CDS             11996..12976
                     /locus_tag="JN078_002738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709926.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialate O-acetylesterase"
                     /protein_id="HAY9041888.1"
                     /translation="MDAIISPDYYYVLTIAGQSNAMAYGEGLPLPAREDAPHPRIKQL
                     ARFAHTHPGGPSCHFNDIIPLTHCPHDVQDMQGYHHPLATNHQTQYGTVGQALHIARK
                     LLSFIPDNAGVLIVPCCRGGSAFTAGSEGTYSERHGASHDACRWGTDTPLYQDLVSRT
                     RAALAKNPQNKFLGVCWMQGEFDLMTSDYASHPQHFNHMVEAFRRDLKQYHSQLNNIT
                     DAPWFCGDTTWYWKENFPHAYEAIYGNYQNNILANIIFVDFQQQGERGLTNAPDEDPD
                     DLIMGYYGSAYRSPENWTTALRSSHFSAAARRGIISDRFVEAILQFWRGK"
     gene            complement(12984..13106)
                     /locus_tag="JN078_002739"
     CDS             complement(12984..13106)
                     /locus_tag="JN078_002739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012139841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HAY9041889.1"
                     /translation="MISFVFLLLVCPNCHAMLHRRKPPFTPEELKALMDANKSN"
     gene            13188..14061
                     /locus_tag="JN078_002740"
                     /pseudo
     CDS             13188..14061
                     /locus_tag="JN078_002740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004186812.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
     gene            14106..14285
                     /locus_tag="JN078_002741"
     CDS             14106..14285
                     /locus_tag="JN078_002741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001153035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041890.1"
                     /translation="MQDLAASLQLAFDSGAKRVLLPISWAMDIPTVPAELFTKFQVSF
                     YSEPVDAVYKALDVN"
BASE COUNT         4062 a         3347 c         3165 g         3929 t
ORIGIN      
        1 ctcctaacga taccgtgtta ttcgctggaa taatcgtacc gttgcgcgtc aactgtacgc
       61 cgacgccctg cgctggtgaa aacgacgcgg tattggtgaa aatcgagttg cccgcatctg
      121 cggttgtgcc ggagaggtaa taccccaggt tttggctttt cgcacaataa acggtaagag
      181 gaattggcac tgaaccaggg tagtccggca gagtaacggt gacatcacga gcagaaacat
      241 cgcagccgcc agtaggcacc accacatcat tattggcgta aatattccac acaaactgga
      301 aatcatcgct gttatagttg ttggtctgtc gcaaaataag cacggcaatt aatgagccag
      361 ctttaatcgc caccccgccc gcactgctca caggcgtcaa ataaagcgcc accggccacg
      421 gcttatccgt tctcgaatta taaacaaccc gcggcgtttc gctggtggtc ggaaatggat
      481 agctactgcc actatatttt acggtcccgg aaaaattaga taacacgccg ccataagccg
      541 agcctcgttg cagtgtgaca tagtctgtaa tggtttccgg ataatcgtta tggcaaaaga
      601 tttgcgtcga aagatctacg accaggtttt gccccacatt cacgacaggc gcaaggttta
      661 cataaacatt agcgctgcca ccgccaatag ggatagcagt accattggcg gttttacagg
      721 cgaatgacca ggcatttacc gaccagccca tcagcagtac agcaaacagg gtaataactc
      781 gtttcattac aattatctct tcgggttcag ctgtaggtat aggtgatgct aatcactgcc
      841 tgaatggttc cctgagtggc tccgccattt accgtcaatg ctctgacctg taacgggaag
      901 tgcgctgatt gtgaggaatc atccacctga actgttttgg tttcgccagt attcaatgtg
      961 ttgccactgt catcctgtag ctctaactgg atgttttgcg cggtcccctg gtttttataa
     1021 tatccggtac tgtcggctgc cccgctgaag ctggcagtga ccctcgacgt tcccaccgga
     1081 caattagtca actcaagcgc aacatcatgc caggccgatg ccgccccggc agacatcaga
     1141 ctgaaagaat aaagatcgcc gagatcaacc gtggcattgg tggtggaaac tgtgcacggt
     1201 ttggcgacga ccttaccgtt caccgtgatg gtgacatcgg ctgcctgtat tgtcgcactt
     1261 gcgagcgcca atattgccgc caataaatac ccacgtttgc gccatttcat gagcatctcc
     1321 agttactgat attcaagagt gaaggtagcc gtggcattga tatgccccgc agtgacaggc
     1381 acctgtgtcg ccattagccg ggcgtaaaaa ttcaacgtat ttggtttacc cggcgtcagg
     1441 gtcgtccacg aaatcgcgga cgatggagca ttaaggggta tctgattttg ctgctcattc
     1501 agaagctgta ttcccagtcc cgaagccgct gacaccgtat tttcaagtgc aagcaggttg
     1561 gcattgtggc tatctgcaac gccggtaaac ccaaccttta cggcagaaac ggcgttacca
     1621 cagggtgaca gcaaaatacg aaatggaacg acaggagtcg ttgcgccaat gttgttaaat
     1681 tgcttcgccg cgttttccat cagatcaaca gtaaaattgg ttgattcagc ggccacacta
     1741 cagccgttat ctctgacata gccgcggata gtaatcgtgc tatccgcagc caaaacgcga
     1801 cttaccgcca gccacaaaaa agcgcacaga agataaaaag gtttgtttct catcacgccc
     1861 ccttaacgac attcagctga tagctgggtt aataactgct gctgactctc tggtggcagt
     1921 tgataattgg cgatacagtg agcattttcc tcttctcccc atttcacctg aacttttccc
     1981 gctaaaggca ttccgctgag gtaaacctga ccattatccg caacaatgcc gctactctgg
     2041 ctactctctg atgtcaccat cgccccaaac ggcagcggct tattattgtg ggttagcgtc
     2101 atgagcagtt ttatcccaac gcgcgcttta aactctgctc gcacgatcgc cccacgagtg
     2161 ggaacaacgt tagcgaccgc gttatctaaa tcgacgttat cagccagggt attggtatcc
     2221 agcgccactc tgttttcccg atattcggtg gcataaggca gcacggcata accgcgccag
     2281 tcggtacgca cccccgtctg gttttcgact tttgcatctt ttgcgccagg cgctttaaca
     2341 agtaccaccg tatcgtttaa cggctgcccc agcgttacgc cattggcatg agccagtacc
     2401 ccaccgctga ctccgtaata gagctgctta atatcatcgc tatggctgta accgatattg
     2461 gcattgccgt aaccaccgcg ataattcagc gtggcgtagc ctgtacttcc gctattacca
     2521 tcgcctcccc cggcatagcc ggtttgcacg ctatagctga ggttgttgtc ttccagcaac
     2581 gtaccgtata caccagccag attggtcatc cgaccgttga gatcgtgtga cacgctgtag
     2641 ctggcactgg catgtcgcca ctgagattta ctgtcagaac gcagccagtg gctgaaagga
     2701 atattgacgt taagcgctaa catctgatcc cgcccttttt gccaggcgtt tttcgtcagg
     2761 ctatagctga gcgtccagtt gatatcttcg aacgcagtat ttaatccagc ctagaattgc
     2821 tcatcgacat tactcgttcc ccaataagtt tgatggctac cactcaaata cagtgttgat
     2881 gtgcgcccga gttgctgagt aacggtgagc tgtaatttcc cgcgtttgtt ataagcgagg
     2941 ttgtaatagt cggtgaattt cggcttaacc tgaataactc catcctgtgt ttcgatgttg
     3001 tagccattca ttcgactgta tgttgtatca gcgaaattaa aatatccgct ggtcgaataa
     3061 cggtaaccca ctaactgaat attcgtgcct gactcattga gcgatttgtt atagagaaaa
     3121 cgcaccgatt gtccgtcatg ctgactgtca tcgggaagtg tggaattagc ctgcgtcata
     3181 tccacagaca gagcgcccag tgcccccatg tttttcccga taccgaaatt aaaagcacga
     3241 taacgatccg ccagttgcgt tccaccatat attgtccagc cagccggaag gccgtggagt
     3301 aatgtacttt ggaaaaagcg gggtttttcc tgctgcgtat ttccactacg gtattctcct
     3361 gccgtaatgg aataacgagt atgcccttca cgttgcaaaa gcgggactga cgaatagggt
     3421 acggtaaaaa tctgcgtgct gccgtcagcc tctttgatcg ttacctgcaa gtcaccacta
     3481 ttacctgcgg catagatatc gttgatggta aaaggccccg gtggcaccgt actattataa
     3541 atgtcatacc cattttgttt aatagtgacc tgtgcagtac cacgagcaat accgtggatc
     3601 accggggcaa atcctctttg gctatcgggt aacatattgt catctgaggc caattgtgcg
     3661 ccgcgaaagt taataccatc gaaaatatcg ccctgggtat aaccatcacc cagcgtcagc
     3721 cgggaacgta acggtattat gtctcgctca agccaggtat tgatatgctg ccatttattt
     3781 ttgctacctg atgatctgtc gctactgtta taactccagc tggtattgtc gcgtaaacac
     3841 cacgcaccaa tatttaaccc actctgtagg tttaaatatg cataatggct gttaccccca
     3901 atctgattct gtacactatt tccgctgaaa ttataattga gcaatccggc attaataccg
     3961 ggatcccata actcaggagg aatataacca cgcgcgcgat tactcataaa tgcctgaggg
     4021 atcgtcaggt tcagtcgctg ctgaccaaca tccagatgcg cagtagcgtc atggatcatt
     4081 gaggttaatg gcacgcaggc atcatctgcc agcagattca taccggagac agaagccgca
     4141 ttcagcccca tactggcaag ttgcgcgcgt gtcaggcagg gaacaatccc ttgttcactg
     4201 tcgcccgtat taaatgtgac atcacgcgtt gccatataac cattattcaa atagatatcg
     4261 acgcgatacg tccctggcgg taattcttgc ccattttcaa aacgcgataa atcggccaca
     4321 gcctggggat catccgctaa aaagcgcgga ttaaaataga gttcggcaga tgacaaaggt
     4381 gcctgtgcgg caaaagcaca ggcgacaacg agccggacaa aaaaaccagc caaacgatgc
     4441 ttacgaatat gcaagcattg tgtgtttcgc tggtaaagtc ttaaattcag atatgacatt
     4501 attcctccgg tttaaaatta cccggcagtc aattcttttt attcaggcga gaaattcccc
     4561 ctgcgttatt ccattacgcc cgtcattttg ggggtaagtg cgccataatc atttattgtt
     4621 cggtaagtaa tattgcttcc tgcatcagaa ggcaatttaa ccgtgctttc gcccattgga
     4681 ggcaccaatg cattttcaag aacccgggtt ccggcattca actctgttac cgtcagataa
     4741 tagggtgtcg ggttaatcag cgtcagagaa ttcgcgctac gacgaaatct taatttttct
     4801 gcggcctgat cgggtggcaa cgctaattta gccgggcgat agtacagttt aatgcggctg
     4861 ataattgcga actgtagcgt attctcagtc aattttgatt tatccattga cggaatcgct
     4921 ttaacattca tccagaataa actttcccgg tcctgtggca attggttatt tgttgcatca
     4981 agaatacgca aggtattctc tttttttccc ttcatcgcaa acagaggagg cgtcacgata
     5041 aaacgaccat cctttacacc atcggcattt tccatccatg attgaattaa ataggtacta
     5101 ttttcatcat tatttgtcac ggcaagttgc acttgttttt gccctgccgg ataaattacg
     5161 cgagtcgcac ctaaggccac tcccgcttca gcgcgtccgg caaccatcat tgccatgaac
     5221 atcaggatac ctgccagcaa gcagaatgtt atttcctgcg atttccttac attggcgttt
     5281 ttattactca ctgtcctgtt cctgttatca cattatctgc tgaacaatta ctgataggtt
     5341 aaagagaacc aggcctgggc attggcgatg ccgccagtaa cccaacgccc ggtagcacga
     5401 tatttggcga tgaaatgtag cgaagtagag cctgagtaaa gccgtttcca gtttactgga
     5461 ggacgattaa tcggtacgag gtttccttca tcatcaaaca acgctacgcc aatattggtg
     5521 gctatccctg gcccctctcc cacggaaagc acatccggat ttttaccatc cgcgacaccg
     5581 tgaaacgcca cacccacacg ttcactcacc accgtgctac attcccgtaa atgaataaca
     5641 aaaggcaccg gtgcgctatc ttcccctacc gcatgaaacc ggttactgct gatttgcccc
     5701 atattgaccg tcatttgttt atcaccggct tcaatccggc aagtttccgc aataatgacg
     5761 ccctgaaatt gcatatttcc gccgggcagc gtagtattcc atttatttcc ggccagagca
     5821 aacattggca gcaacgacgc taatagaaat aatctcttcc ttttcatcgt tatttttatc
     5881 gcacaagggt gggcatccct gcccgtaatg acgtccctga acctgggtag gttattgata
     5941 ctgaaccttg aaggtcgcat ccgcattagc tgcgccaggg gttgcgacac cggttgcata
     6001 ataacgcgcc tggaacggaa tggtgttagt accgttattc agggttgttt gctcactgaa
     6061 tgtcgcacca tccagcgtca gcgcagcacc cgttctgtcc aggatctgta caccaacgtt
     6121 tgttgcgcta cccgcagctg aactctgcag agccagaacg ttggtatgac ccgcatcaat
     6181 cgccgtacct aaaaaggcaa ctgcggcttt agatgcaaca ttggtatcgc aatcattcag
     6241 ctgaatgtta aaaccgacag cagaactggt tgctccttcc tgtgccagcg atgcggtacg
     6301 aacctgtcct aactgaacga tttgatcaac agagcctgca tcaactgcgc aagcggcgtt
     6361 aacaacttcc cctttaaagt gaacggtccc accattaacc gtcgtggcag cggccagagc
     6421 cgctgtagaa ctgagggaca gagccgacag aacaacgatt gccagagttt taattttcat
     6481 gctgctttcc tttaaaaaaa ctatttctaa atcgacatgg gcagtcgttc tgtacacttt
     6541 gttttgtcaa cgagtttgac tgccaacact gcacagtttt cccccaaaag atgaaacatt
     6601 tggggccatt ttgactcata gaggaaagca tcgcgcacaa actttttcag tttatttgtt
     6661 ggcttaatat tctattgtta tctttattta tagattttta tattgcatga ggtggttttt
     6721 ggagagaaga atgaggaaga tgcgtcgagc cacagaaacg ttagctttac atatagcgga
     6781 ggtgatgtga aattaattta caagagaaat aatttacata tcaaacagtt agatgatttt
     6841 tgtcgttttt taaaattttt atgcttgaga aaaaatacgt aacttattta tgatatggac
     6901 aatttggccc caattgtctt gtatttattt tttaacttta ttatcaataa gttaattcaa
     6961 acctcttctc tttttaattt ttcgtttatg agattatttc tttcccataa tccggcaaaa
     7021 cgagcagcat tactggcggt ataacgtaca gtatggcgaa tatttcgatg cccgagataa
     7081 tcctgaatta aacgagtatc tgcaccacgc tccgccagtt cataaccgca agcatgcctt
     7141 aacatatgag gatgagtctg cgttacggtt ccagcttcaa taccggcatc acgaataatg
     7201 cgataggcct gctggcgaga aagccgactc ccgcggcgag aaataaatat ggcgtcggtc
     7261 cggtcagcgc ctttccagtt agcacgttcc agggtccagc gttccacagc ttcacgctca
     7321 tcaaaacgta acgggtgaac ggtagaaaat ccgttcttca gtcggcgaat atttattcga
     7381 ccttcattaa ggtcaagatc ctgataatgc agatcaagca gttcactaat acgcatccca
     7441 tgccgatatg ccaacagaat aagacaataa tctctggctc ccgttgcccc gtaacaaacc
     7501 gcctgcatca tggcctgaac ttctttaccg gtaagataac gacgtttact cacaatagta
     7561 gtactcctaa ctgagatata tttgaatgaa tacctatagg aaacctcaat cggtcaaaat
     7621 tagcccaata gataaaaaga taaccacaca cgaagtgatg tggctatcag tcaattacat
     7681 taaatatcat acaaaaataa aatatcactg atgtgacaac atctattttc attgatttga
     7741 ttcaatataa caatagattg tagtagatta gcttccagtt gcttaaaaaa taaagaaaaa
     7801 agtgcgaaaa caggagaatt taagtgatgt gtaaatttat gaatgatttt gtttatttat
     7861 tttgaagaac ataaaccatt gtattttgta tggatatggt taacttaatg cttattatga
     7921 taattaagaa ttatacttac aataacatca attaataaat ggttaatcat ttttgatata
     7981 tcgtaagaat aatgtagttt ttaacaccat ccctggtatc tcaactatct ctataaaaca
     8041 gcgtgacgct gtcgtcctct ggctctatcc cagatgccgt aaaaacgccc tgcattgctg
     8101 gcggtatacc agacagtatg acgaatattg cgatgcccaa gataatcctg gataagtcgc
     8161 gtatctattc ccatattcgc caaagcaaaa ccacacgaat ggcgtaacat gtgcggatga
     8221 atctccagtg acaacccggc attaccaccg gaagtcgaga taatatggta aaactgttgc
     8281 cgagaaagcg gattcccctt acgcgataaa aatacccact cgctctcagc atgcgggtac
     8341 gaagtacgga tactcaacca gttttttaaa gcctgaactt ctttattcaa tagcgggggc
     8401 gttgttgaaa agcctttttt taatcgatgg atatatatac actttgcctt aagatcaata
     8461 tccgaaatcc tcaatcgaca aatttcactc gcccggaaac catgaataaa acaaagcaaa
     8521 gtcagacaat aattacgtgc tgcatgaggc ccggtatttg ctgctttaag gagtgattcg
     8581 atttcactat gggtcaggaa gttccttttt ttgttatcag ccttattctt catcgttttt
     8641 cccttataat tacagacgcg cactagctgt gctgggttag caataatcca acatttttat
     8701 cctgattatg tttataaaag cgaacgtttg cttaataact aacgtaagtg gaccagttct
     8761 tctgagtgaa cttaaatggg gtagcaacag ttaattataa taacgttgcc atacaaacgc
     8821 tatgctcttg catgctatgt acctttatat atttatcaat cggatacgaa tctaataata
     8881 cccctcatca ttaatgcaac taatcttatc tatatatcat gtgatatgtt ctgtaacaag
     8941 taaaatcagc ataaaaaatt cagcaaaatt taatattcgt tcaactagcc gtctcacata
     9001 tgacattatt agtcaactcc atttgccaca aaatggctat ttcatggaac gcagtaattt
     9061 cttagtggct attatcatgc taattcttag gtccctagcg attattcctg gctgattcgt
     9121 cagcttacgc catgagattg ttacattcct ttttatcctg gagatatggg ggaacgcagg
     9181 agatgatttt ttcatctaca ttcgttggta aatatagctt tggtcactac gacttaaacc
     9241 ttcctcaatc acagccattc gccgggcgat acggcaaaca aactaagtga aacatcatcc
     9301 tgaaaacacc aacatcaaca agcctctcca gatcgacttc agaagtgacc agttacaagc
     9361 cacaaaccag gaaacatatt tcatgatgag aattatgctc agcctgatgg cgggtaaaca
     9421 ctgattttca ccaagctcac tgagttagct tgcaaagctt cccttgttta gactccaaat
     9481 aaattattta taaaacaaac atttaaacaa agatctttag tttttgaaga ccaccgcaag
     9541 tgttcgtctg gcttcacatg gcatcttcct cttagaaaaa gatcgacata ttttgtgaca
     9601 cgaattgcaa atctggtttt gttgtatgga ttgcgtgatt tttgatctgg tataacaggt
     9661 ataaaggtgc accaagatag tcaatgagac agggcatctc gcaatctatg gcaaacatca
     9721 cttcagttct ttctcatcgg gtgatgaaaa cgcacttcag tctgaaagga atatgaaaat
     9781 gagatcaaca gacactctat tttatgactc tgggtaaaat ggattgagta agtgatatag
     9841 cttacgaaaa ttcaaatcaa ttaaacatca gaagagattt tatactcagg tatttaatct
     9901 ggatctctgt ttatttaaat aatgtgaaaa gagatttttc acaggagacc ttatacaaaa
     9961 aaatataaaa tacagctacc ggttgccaaa gacactataa gcctggcaaa aaatattaca
    10021 caacataaat gctaattgtt tatgcgggct ttgtattgct ttctgtatcc tacaaatgag
    10081 tgaaatttat gaaaaaggct aaaatacttt ctggcgtatt attactgtgc ttttcgtccc
    10141 cattaatttc tcaggctgcg acactggacg tacgtggtgg atatcgtagt ggaagccacg
    10201 cctatgagac tcgactcaaa gtcagtgagg gatggcaaaa tggatggtgg gcaagcatgg
    10261 aaagtaatac ctggaatacc attcatgata ataaaaagga aaatgccgca ctcaatgatg
    10321 ttcaggttga agttaattac gcgattaaac ttgatgatca atggacggtg cgcccgggaa
    10381 tgttaacgca ttttagcagc aacggcacac gctacggacc ctacgtaaaa ctgtcctggg
    10441 acgcgacaaa agatcttaat tttggcattc gctatcgtta cgactggaaa gcttaccgac
    10501 aacaagactt atccagtgat atgtctcgtg ataacgttca tcgttgggat ggatatgtca
    10561 cttaccatat taatagtgat ttcaccttcg catggcaaac gacgctatac agcaaacaga
    10621 acgattatcg ctatgcaaac cataagaaat gggcgacgga aaatgcattt gttctacaat
    10681 accatatgac gcccgatatt acgccataca tagaatatga ctaccttgac cgtcagggtg
    10741 tttacaacgg cagagataat ttatcggaaa acagttatcg cattggtgtg tcatttaaac
    10801 tgtagtagac aggagacagt cacaatgaat aaaacaataa cggcgcttgc tatcatgatg
    10861 gcttcatttg ccgcaaacgc gtctgtatta ccggaaactc ctgtgccatt taaaagtggt
    10921 accggagcaa ttgataacga cactgtctac attggtttag gtagcgcagg tacggcatgg
    10981 tacaagctgg atacacaggc caaagataaa aaatggacag cgttagctgc attccctggt
    11041 ggaccaagag atcaagcaac ctctgcattt attgatggca atctgtatgt gtttggcggc
    11101 attggcaaaa acagagaggg cttgactcag gtatttaatg acgtacacaa atacaacccc
    11161 aaaaccaata gctgggttaa attgatgtcg cacgcaccga tgggcatggc gggtcatgtg
    11221 acttttgtac acaacggcaa ggcttatgtt actggcggtg ttaaccagaa tatcttcaat
    11281 ggctattttg aagatctcaa cgaggctgga aaagattcaa ccgctgtaga taaaatcaat
    11341 gcctactatt ttgacaaaaa agcagaagat tatttcttca ataagtttct gttgtctttt
    11401 gatccctcaa cacagcaatg gagttacgct ggcgaatcgc cctggtacgg aacggctggt
    11461 gcggcggttg tgaataaagg tgataaaacc tggcttatta atggcgaagc caaacccgga
    11521 ttgcgaacgg atgccgtatt tgaacttgat ttcaccggta ataatttaaa atggaataag
    11581 cttgctcccg tctcatcacc agatggcgtc gctggcggtt ttgcggggat aagcaatgat
    11641 tctcttatat ttgccggagg ggccggattc aaaggttcac gagaaaatta ccagcacgga
    11701 aagaactatg cgcatgaagg cctgaaaaaa tcatatagca ctgatattca tctttggcat
    11761 aacgggaaat gggataaatc gggtgaatta tcgcaaggtc gggcctacgg agtatcattg
    11821 ccctggaata atagtctatt gattattggc ggtgaaactg caggcggcaa agcggtgacg
    11881 gattcagttt tgatctctgt gaaggataat aaagtcacag tacaaaacta acgcttcagg
    11941 gccccagtaa aggggccctg ctatcaattt atcatttcaa ttacgcgaaa attatatgga
    12001 cgcaataata tcgcccgatt attactatgt tcttaccatt gctggtcagt ctaatgctat
    12061 ggcgtatggc gaaggactgc cattaccggc cagggaagat gcgcctcatc ccagaattaa
    12121 acaattagcg agatttgcgc atacgcatcc cggaggcccg tcatgtcact ttaacgacat
    12181 tattccacta actcactgcc cacacgatgt tcaggatatg cagggttatc accatcctct
    12241 ggcaacgaat catcaaacac agtacggcac cgttggccag gcactgcata ttgcacggaa
    12301 attactgtcc tttattcctg ataacgcagg ggttctcatc gttccgtgtt gccgtggcgg
    12361 atcggctttt accgcgggca gcgaagggac atattcagaa cggcacggag ccagccatga
    12421 tgcttgtcgt tggggaacgg atactccgct ataccaggat ttagtcagca gaacgcgagc
    12481 cgcactggca aaaaatccgc agaacaaatt cctcggcgta tgctggatgc aaggcgaatt
    12541 tgacttaatg accagtgact acgcgtcaca ccctcaacac tttaatcata tggttgaagc
    12601 ctttcgtagg gatctaaaac aataccattc tcagcttaat aatattactg acgcgccgtg
    12661 gttttgcggc gataccacct ggtactggaa agaaaatttc cctcatgcgt atgaagctat
    12721 ttatggcaat tatcaaaata atattttagc taatattatt ttcgtcgact tccagcaaca
    12781 aggtgaaaga ggactgacga acgcgcctga tgaagacccg gacgatttaa tcatgggata
    12841 ttacggttca gcgtaccgct caccggagaa ctggacgacg gcactgcgaa gcagtcattt
    12901 cagcgcggca gcccgtcggg ggattatttc tgacaggttt gtagaagcaa ttttgcagtt
    12961 ttggcgcgga aagtgagcgt tcattaattt gatttattcg catccatcaa cgcttttaac
    13021 tcctccggcg taaacggtgg tttgcgtcgg tgcaacatcg catggcaatt agggcacaca
    13081 agcagcaaaa aaacaaatga gatcaaggta atatatcttc acttgcaggc ttgaacagca
    13141 gaaaatttgc gagcatgatc gcaattattt cactgctagg gatatcaatg gcttccagta
    13201 aatcgctaca gcaggcaatt gccaatataa aaatctggca taagggtgaa cagcgcgcac
    13261 cgcataaacc attgttattg ctatacgtat tagcgggata cctgaatgga catccacgcc
    13321 ttttcgatta tggatcggaa atctacgaac ctctgcacag tttactggaa cgttttgggc
    13381 cacagcgttc acagtaccga cctgatatgc cgttctggcg attacaaggc gacggattct
    13441 ggcaattaca caatgccgag ctttgctcaa cagcagggag cagccgacaa ccgccagtga
    13501 aggaactgaa cgaataccac gttgcaggcg gtttcgatga acagcactac gccctggtaa
    13561 ccggcaataa aaaactcatc aatactctag cgcaacagat actcgaagcg cacttcaccg
    13621 agagtattca ggaagaaatt gctgacgagc tgggttttga tctccagcaa atccgtaaac
    13681 agcgcgaccc gttatttcgc aaaaatgtat tacgcgctta taactaccag tgcgcgatat
    13741 gtggctttaa tatgcgccac gacgacacca ccgtcgcgct ggaagcggcg catataaaat
    13801 ggaaacagca cggcggtcct tgtgaaattc ctaatggcct ggcgctttgc gccaattcac
    13861 cataaagcct ttgataaagg atcgattggc ctggacgaaa atatgcgggt actggtatca
    13921 gatgcagtaa acggcggagg gagcgttgag agattattct gggattttga cgggaaaatt
    13981 attgcgttgc cgcaggtgcg taaaaattac ccttatgagg ggtttgtgga gtggcatcgg
    14041 aatgaggttt ttagggggtg aggttgataa ctatcgcagt atgttcaata ttgctgacat
    14101 aatcagtgca ggatcttgcc gctagtttac aactcgcctt cgatagcggc gcaaaacgag
    14161 ttctgttgcc gatatcctgg gctatggata ttccaacagt tccggcagag ttgtttacca
    14221 agtttcaggt aagtttttac tcagaaccgg ttgatgcggt ttataaggcg ctggatgtga
    14281 attaacacat tcctcagctt atttacaaaa ggattattcc catttgatat aatatcagtg
    14341 ccaatttact tttttcaatg gaatatatct cggctaaata acaataaaac ttatcgctaa
    14401 tggattaaat aaacaatttt ctaattcatt tcacggtaat gactccaact tactgatagt
    14461 gttttatgtt cagataatgc ccgatgacct tgtcatgcag ctc
//
LOCUS       DADMJB010000104        14342 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.104, whole genome shotgun sequence.
ACCESSION   DADMJB010000104 DADMJB010000000
VERSION     DADMJB010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14342
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.104"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..619)
                     /locus_tag="JN078_002742"
     CDS             complement(<1..619)
                     /locus_tag="JN078_002742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707761.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C"
                     /protein_id="HAY9041891.1"
                     /translation="MRGKKRIGLLFLLIAVVVGGGGLLLAQKALHKTSDTAFCLSCHS
                     MSKPFEEYQGTVHFSNQKGIRAECADCHIPKSGMDYLFAKLKASKDIYHEFVSGKIDS
                     DDKFETHRQEMAETVWKELKATDSATCRSCHSFDAMDIASQSESAQKMHNKAQKGGET
                     CIDCHKGIAHFPPEIKMDDNAAHELESQAATSVTNGAHIYPFKTSR"
     gene            complement(1007..1753)
                     /gene="cutC"
                     /locus_tag="JN078_002743"
     CDS             complement(1007..1753)
                     /gene="cutC"
                     /locus_tag="JN078_002743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310611.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
                     /protein_id="HAY9041892.1"
                     /translation="MALLEICCYSMECALTAQQNGADRVELCAAPKEGGLTPSLGVLK
                     SVRQWVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVD
                     MPRMEKIMAAAGPLAVTFHRAFDMCANPLNTLSNLAELGIARVLTSGQKSDALQGLSK
                     IMELIAHRDAPIIMAGAGVRAENLHHFLDAGVLEVHSSAGAWQASPMRYRNQGLSMSS
                     DAHADEYSRYVVDGAAVAEMKGIIERHQAK"
     gene            complement(1767..2333)
                     /locus_tag="JN078_002744"
     CDS             complement(1767..2333)
                     /locus_tag="JN078_002744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707763.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HAY9041893.1"
                     /translation="MANWQSIDELQDIASDLPRFTHVLDELSRRLGLDITPLTADHIS
                     LRCHQNVTAERWRRGFEQCGELLSENMINGRPICLFKLHEPVQVAHWQFSIVELPWPG
                     EKRYPHEGWEHIEIVLPGDPETLNARALALLSDEGLSLPGISVKTSSPKGEYERLPNP
                     TLAVTDGKTTIKFHPWSIEEIVASEQSA"
     gene            2549..4282
                     /gene="argS"
                     /locus_tag="JN078_002745"
     CDS             2549..4282
                     /gene="argS"
                     /locus_tag="JN078_002745"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HAY9041894.1"
                     /translation="MNIQALLSEKVRQAMIAAGAPADCEPQVRQSAKVQFGDYQANGM
                     MAVAKKLGMAPRQLAEQVLTHLDLNGIASKVEIAGPGFINIFLDPAFLAEHVQQALAS
                     DRLGVSTPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHKVIRANHVG
                     DWGTQFGMLIAWLEKQQQENAGEMELADLEGFYRDAKKHYDEDEEFAERARNYVVKLQ
                     SGDEYFREMWHKLVDITMTQNQITYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKG
                     LAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLYTTTDIACAKYRYETLHADRVL
                     YYIDSRQHQHLMQAWAIVRKAGYVPESVPLEHHMFGMMLGKDGKPFKTRAGGTVKLAD
                     LLDEALERARRLVAEKNPDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNML
                     AFEGNTAPYMQYAYTRVLSVFRKAEINEEQLAAAPVIIREDREAQLAARLLQFEETLT
                     VVAREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENEEVRNSRLKLAQLTAKTLKLGL
                     DTLGIETVERM"
     gene            4459..4947
                     /locus_tag="JN078_002746"
     CDS             4459..4947
                     /locus_tag="JN078_002746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416391.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
                     /protein_id="HAY9041895.1"
                     /translation="MFKFLVLTLGIISCQAYAEDTVIVNDHDISAIKDCWQKNSDDDT
                     DINVIKSCLRQEYNLVDAQLNKAYGEAYRYIEQVPRTGVKKPDIEQLNLLKKSQRAWL
                     DFRDKECELILSNEDVQDLSDPYSESEWLSCMIIQTNTRTRQLQLYRNSEDFYPSPLT
                     RG"
     gene            complement(5067..5459)
                     /locus_tag="JN078_002747"
     CDS             complement(5067..5459)
                     /locus_tag="JN078_002747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlhE"
                     /protein_id="HAY9041896.1"
                     /translation="MRTLLAILLFPLLVQAAGEGMWQASSVGITLNHRGESMSSAPLS
                     TRQPASGLMTLVAWRYQLIGPTPSGLRVRLCSQSRCVELEGQSGTTVAFSGIAAAEPL
                     RFIWEVPGGGRLIPPLKVQRNEVIVNYR"
     gene            complement(5459..7537)
                     /gene="flhA"
                     /locus_tag="JN078_002748"
     CDS             complement(5459..7537)
                     /gene="flhA"
                     /locus_tag="JN078_002748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HAY9041897.1"
                     /translation="MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFIL
                     DLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHT
                     GAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGM
                     PGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVI
                     NVVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQD
                     VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGCEQKA
                     PAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRK
                     KFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLP
                     GEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQE
                     AQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP
                     IQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEPGL
                     ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRH
                     IRMTATIGGK"
     gene            complement(7530..8633)
                     /gene="flhB"
                     /locus_tag="JN078_002749"
                     /pseudo
     CDS             complement(7530..8633)
                     /gene="flhB"
                     /locus_tag="JN078_002749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416394.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FlhB"
     gene            complement(8716..9360)
                     /gene="cheZ"
                     /locus_tag="JN078_002750"
     CDS             complement(8716..9360)
                     /gene="cheZ"
                     /locus_tag="JN078_002750"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase CheZ"
                     /protein_id="HAY9041898.1"
                     /translation="MMQPSIKPADEHSAGDIIARIGSLTRMLRDSLRELGLDQAIAEA
                     AEAIPDARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPI
                     DLADARELVTDTRQFLADVPAHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIE
                     RQLLMVLLENIPEQESRPKRENQSLLNGPQVDTSKAGVVASQDQVDDLLDSLGF"
     gene            complement(9371..9760)
                     /gene="cheY"
                     /locus_tag="JN078_002751"
     CDS             complement(9371..9760)
                     /gene="cheY"
                     /locus_tag="JN078_002751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheY"
                     /protein_id="HAY9041899.1"
                     /translation="MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALN
                     KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAG
                     ASGYVVKPFTAATLEEKLNKIFDKLDM"
     gene            complement(9775..10713)
                     /locus_tag="JN078_002752"
     CDS             complement(9775..10713)
                     /locus_tag="JN078_002752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000036372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator protein-glutamate
                     methylesterase"
                     /protein_id="HAY9041900.1"
                     /translation="MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDL
                     IKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAI
                     DFVTKPQLGIREGMLAYSEMIAEKVRTAAKASLAAHKPLSAPTTLKAGPLLSSEKLIA
                     IGASTGGTEAIRHVLQPLPLSSPALLITQHMPPGFTRSFADRLNKLCQIGVKEAEDGE
                     RVLPGHAYIAPGDRHMELARSGANYQIKIHDGPVGMLAMRQAGAWTLAQNEASCVVFG
                     MPREAINMGGVCEVVDLSQVSQQMLAKISAGQAIRI"
     gene            complement(10716..11528)
                     /gene="cheR"
                     /locus_tag="JN078_002753"
     CDS             complement(10716..11528)
                     /gene="cheR"
                     /locus_tag="JN078_002753"
                     /EC_number="2.1.1.80"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005063150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HAY9041901.1"
                     /translation="MRLPGCSRYSFRRISQLIYQRAGIVLADHKRDMVYNRLVRRLRS
                     LGLTDFGHYLNLLESNQHSGEWQAFINSLTTNLTAFFREAHHFPLLADHARRRSGEYR
                     VWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRHEELKNL
                     TPQQLQRYFMRGTGPHEGLVRVRQELANYVDFAPLNLLAKQYTVPGPFDAIFCRNVMI
                     YFDQNTQQEILRRFVPLLKPDGLLFAGHSENFSHLERRFTLRGQTVYALSKD"
     gene            complement(11666..12232)
                     /gene="flhC"
                     /locus_tag="JN078_002754"
     CDS             complement(11666..12232)
                     /gene="flhC"
                     /locus_tag="JN078_002754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar transcriptional regulator FlhC"
                     /protein_id="HAY9041902.1"
                     /translation="MSEKSIVQEARDIELITLGARLQMLESETQLSRGRLIKLYKELR
                     GSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQC
                     PQAEEGPLLALTRAWTLGRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPS
                     RAVKRRKLSQNPADIIPQLLDEQRVQAV"
     gene            complement(12235..12585)
                     /gene="flhD"
                     /locus_tag="JN078_002755"
     CDS             complement(12235..12585)
                     /gene="flhD"
                     /locus_tag="JN078_002755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416406.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar transcriptional regulator FlhD"
                     /protein_id="HAY9041903.1"
                     /translation="MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMAT
                     TLAALTLPQMVKLAETNQLVCHFRFDSHQTITQLTQDSRVNDLQQIHTGIMLSTRLLN
                     DVNQPEEALRKKRA"
     gene            13364..13792
                     /gene="uspC"
                     /locus_tag="JN078_002756"
     CDS             13364..13792
                     /gene="uspC"
                     /locus_tag="JN078_002756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspC"
                     /protein_id="HAY9041904.1"
                     /translation="MSYSNILVAVAVTPESQQLLAKAVSIARPVKGHISLITLASDPE
                     MYNQLAAPMLEDLRSVMQEETQSFLDKLIQDAGYPVDKTFIAYGELSEHILEVCHKHH
                     FDLVICGNHNHSFFSRASCSAKRVIASSEVDVLLVPLTGD"
     gene            complement(13799..>14342)
                     /locus_tag="JN078_002757"
     CDS             complement(13799..>14342)
                     /locus_tag="JN078_002757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha,alpha-trehalose-phosphate synthase"
                     /protein_id="HAY9041905.1"
                     /translation="QIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQ
                     HFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT
                     SALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQI
                     VPRSAESQQRDKVATFPKLA"
BASE COUNT         3688 a         3785 c         3347 g         3522 t
ORIGIN      
        1 tgcgagaagt tttgaaagga taaatatgtg cgccattagt cactgaagta gcggcctgac
       61 tttccagctc atgcgccgcg ttgtcatcca tttttatttc tggcggaaaa tgggcaatgc
      121 ctttatgaca atcgatacag gtttcgccgc ccttttgtgc tttgttatgc attttctgcg
      181 cagattcact ttgcgaggca atatccatgg catcaaaaga atggcaacta cggcacgttg
      241 cagagtcagt tgcttttaat tctttccata ctgtttcggc catttcctgg cgatgagttt
      301 cgaacttatc gtcactgtct attttgccgc taacaaattc atgataaata tctttagatg
      361 cttttaattt agcaaataaa taatccatcc ctgactttgg aatatggcaa tctgcacatt
      421 ccgcacgtat ccctttctgg ttcgaaaagt ggacagttcc ctgatattcc tcaaaaggtt
      481 tactcatcga gtggcaggaa aggcaaaatg ctgtatccga cgttttatgt aaggcttttt
      541 gcgccagcaa taacccgccg ccaccaacca caaccgctat cagcaaaaac aataacccaa
      601 tgcgtttttt ccctcgcata gattcctcta aataaattcc agaacaccga aatcattgga
      661 taattaaata cacaacgaat taaccgcttg cataactcgg cacaacactg cctgaaataa
      721 tcgataaaga atatgattta ttacaatgta atcattaatt gctaaggaat aaccctgttg
      781 ttatttagaa tatatatttg tcagttttag caatttaaac cccataatta atgtgaatat
      841 ataaaatatt tttagcacaa cgctatgttc actgtcaccc gctcaacaga tcacggttat
      901 cgtacgtttt ttatactgct cagggataaa aaaaggcccc tgtcgaaatt gcaggggcct
      961 ggtacgagca agcatcatat tgggcgacat gatgcaacgg taaaaatcat ttggcctgat
     1021 ggcgttcaat gattcctttc atttcagcaa ccgccgcccc gtctacgaca taacgcgaat
     1081 actcgtccgc gtgtgcatct gatgacatgg acaatccttg attacgataa cgcatcggtg
     1141 aagcttgcca cgctcccgcg gagctatgga cttccagcac tccggcatcg aggaagtggt
     1201 gcaggttttc tgcacggact cctgctccgg ccataatgat tggagcatca cgatgggcaa
     1261 taagttccat aatttttgat aaaccttgca gtgcatctga tttttgccct gatgtcagca
     1321 cccgggcgat gcccaattcc gcaagattac tgagtgtatt taaagggtta gcgcacatat
     1381 cgaaggcgcg atgaaaagtc actgccagcg gaccggcagc agccattatt ttttccattc
     1441 gtggcatatc gacattcccg tcaacatcga gcacgcccgt caccagtcca ggaaaaccta
     1501 attcgcggac tgtgcgcaca tcctcaagaa tggcggcaaa ctcaccgtcg ctgtagcaaa
     1561 aatcaccacc gcgtgggcgg ataatcggat gcacagggat cgtcacccac tggcgcacgg
     1621 atttcagtac acccaacgac ggcgttaagc ccccctcttt tggggctgcg cataattcaa
     1681 ctctgtctgc gccgttttgc tgcgccgtta gtgcacattc catgctgtaa cagcaaattt
     1741 ccagtaatgc catttttact ccttaattac gccgactgct cgctggcaac gatctcttca
     1801 atggaccacg gatgaaactt aatagttgtt ttgccatcgg tgaccgccag cgtcggattc
     1861 ggtaatcgct catactcacc ttttggcgaa ctggttttca ctgagatccc cggtaggctg
     1921 agtccttcat cagaaagcaa tgccagcgca cgggcattca gcgtttctgg atcacccggc
     1981 agaacgattt caatatgttc ccaaccttcg tgtgggtaac gtttttcccc gggccacggt
     2041 agctccacaa tggaaaactg ccagtgcgca acctgtaccg gttcatgcaa tttaaacaga
     2101 caaatcggtc tgccattgat catattttct gacaaaagct cgccacactg ttcaaaaccg
     2161 cgacgccagc gctcagcggt gacgttttga tggcaacgca aagaaatgtg atcggcagtc
     2221 agcggagtga tatccaaccc cagacggcgg gagagttcat ctaatacgtg ggtaaatcgc
     2281 ggtaaatccg atgcaatatc ctgcagctcg tcgatagatt gccagttcgc cataatcact
     2341 cttcgtcttt cagtaaaagc gttaatttac cctgttgccc tgcgccaacc aaccgctgat
     2401 ttcacgccgc ttctgatgca atagtgaaaa cggcaatacg ccacgcgcac gttgctgacg
     2461 aaaacagcca tttgcagtat actcccgccc taatttcttt aactggtgcg ggcaattttt
     2521 gctcgcttca tcaatgtaag gtattccggt gaatattcag gctcttctct cagaaaaagt
     2581 ccgtcaggcc atgattgcgg caggcgcgcc tgcggattgc gaaccgcagg ttcgtcagtc
     2641 agcaaaagtt cagttcggcg actatcaggc taacggcatg atggcagttg ctaaaaaact
     2701 gggtatggca ccgcgacaat tagcagagca ggtgctgact catctggatc ttaacggtat
     2761 cgccagcaaa gttgagatcg ccggtccagg ctttatcaac attttccttg atccggcatt
     2821 cctggctgaa catgttcagc aggcgctggc gtccgatcgt ctcggtgttt ctacgccaga
     2881 aaaacagacc attgtggttg actactctgc gccaaacgtg gcgaaagaga tgcatgtcgg
     2941 tcacctgcgc tctaccatta ttggtgacgc agcagtgcgt actctggagt tcctcggtca
     3001 caaagtgatt cgcgcaaacc acgtcggcga ctggggcact cagttcggta tgctgattgc
     3061 atggctggaa aagcagcagc aggaaaacgc cggtgaaatg gagctggctg accttgaagg
     3121 tttctaccgc gatgcgaaaa agcattacga cgaagatgaa gagtttgccg agcgtgcacg
     3181 taactacgtg gtaaaactgc aaagcggtga cgaatatttc cgcgagatgt ggcacaaact
     3241 ggtcgacatc accatgacgc agaaccagat cacctacgat cgtctcaacg tgacgctgac
     3301 ccgtgatgac gtgatgggcg aaagcctcta caacccaatg ctgccaggaa ttgtggcgga
     3361 tctcaaagcc aaaggtctgg cagtagaaag cgaaggggcg accgtcgtat tccttgatga
     3421 gtttaaaaac aaggaaggcg aaccgatggg cgtgatcatt cagaagaaag atggcggcta
     3481 tctctacacc accactgata tcgcctgtgc gaaatatcgt tatgaaacac tgcatgccga
     3541 tcgcgtgctg tattacatcg actcccgtca gcatcaacac ctgatgcagg catgggcgat
     3601 cgtccgtaaa gcaggctatg taccggaatc cgtaccgctg gaacaccaca tgttcggcat
     3661 gatgctgggt aaagacggca aaccgttcaa aacccgcgcg ggtggtacag tgaaactggc
     3721 cgatctgctg gatgaagcct tggaacgtgc acgccgtctg gtggcagaaa agaacccgga
     3781 tatgccagct gacgagctgg aaaaactggc taacgcggtt ggtattggag cggtgaaata
     3841 tgcggatctc tccaaaaacc gcaccacgga ctacatcttc gactgggaca acatgctggc
     3901 gtttgagggt aataccgcgc catacatgca gtatgcttac acgcgtgtat tgtccgtgtt
     3961 ccgtaaggca gaaattaacg aagagcaact ggctgcagct ccggtaatca tccgtgaaga
     4021 tcgtgaagcg caactggcag ctcgcctgct gcagtttgaa gaaaccctca ccgtggttgc
     4081 ccgtgaaggc acgccgcatg tgatgtgtgc ttacctgtac gatctggctg gtctgttctc
     4141 tggcttctac gagcactgcc cgatcctcag cgcagaaaac gaagaagtgc gtaacagccg
     4201 tctgaaactg gcacaactga cagcgaagac gctaaagctg ggtctggata cgctgggtat
     4261 tgagacagta gagcgtatgt aatcgatttt tcgtgagagt aaagcctgat cagggttacc
     4321 tgatcaggct tttttattgc catctaaatg tattctgaaa atggacatgc cattgttttc
     4381 tgactgttgg ataagaggcc agaagcgtaa tatccggccc cagggaaacg ataacggttg
     4441 aatttaagga ataccgcagt gtttaaattt cttgtattaa cattaggcat tatctcttgc
     4501 caggcttacg cagaagatac ggttatagta aacgaccatg acatttcagc catcaaagat
     4561 tgttggcaaa aaaattcaga tgatgatact gacattaacg tgatcaaatc atgcctgcga
     4621 caagaataca atctcgtcga tgcgcaatta aataaagcct atggtgaagc ttatcgttat
     4681 atagaacaag tgccacgcac aggtgtaaaa aaacctgata tcgaacaact taacttgctt
     4741 aaaaaatcac agcgagcctg gctggatttt agggacaaag aatgtgaatt aatcctttca
     4801 aatgaggacg ttcaggattt aagtgaccct tattctgaat cagaatggct ctcatgtatg
     4861 atcatacaga ccaatacgcg aactcgccag ttgcagctat accgtaactc tgaagatttt
     4921 tatccaagcc ctttgacaag aggataattc acatcttttt ggcatgtttt gttgcaagct
     4981 attcctgata aataattgca acaagacatc gagccttttt cactgagtta ttaaacatac
     5041 tcgcgagcgc gtaatttttt tgtccttcag cgataattca caatcacttc attacgttgt
     5101 acctttagcg gtggaattaa ccgcccaccg cctggcactt cccagataaa tcgcaacggt
     5161 tctgctgccg ctataccgga aaaggccacg gtggttccgc tctgcccctc taattcgaca
     5221 caacgagatt gcgaacacaa gcgaacccgc agtcctgaag gtgtcgggcc gataagctga
     5281 taacgccacg ctaccagcgt catcaatcct gaagcaggtt gtcgcgtaga aagaggcgca
     5341 gacgacatcg actcaccgcg atgatttagc gtaattccta cactacttgc ctgccacatc
     5401 ccctccccgg cggcttgcac cagcagcgga aacaataata ttgctaataa ggttctcatt
     5461 atttgccgcc aattgtcgcc gtcatgcgga tatgtcggtt atcagacagt tccagattcg
     5521 acaggaccac taactgcggc aagctgcggc gcaggaagcg agacaataat ggtcgcagcg
     5581 cgtggttcac caacaatact ggcggcgcac ccagcatctc ctgacgggat agcgcttcct
     5641 gagtttgcgc cagtaaacga tccgccagcc ctggctccag tcctcccccg ccctgcagcg
     5701 cctgtagtaa caaacgttcc agcggtgtat cgaggccaat aacatggact tcatctttgc
     5761 caggaaacca ctgctgggta atcgcccgtc ccaacgccac gcgcacgacg gcggttaatt
     5821 catgtggatc gctttggatg ggcgcatgtt ccgccagcgt ttcgagaatg gtgcgcatat
     5881 cgcgaatcgg tactttttca tcgaggagat tttgcagcac tttatgcagt gtggtgagcg
     5941 tgacgacgcc aggaacgaga tcttccgtca gctttggcat ctcctgggcg acgcgatcca
     6001 acagctgttg cgcctcctga cgaccaaaca gctctgcggc atgctggcta atgaggtggt
     6061 taagatgcgt tgctaccacc gtgctggcct caaccactgt gtacccctga atctgcgcct
     6121 gttcttttag cgcactttca atccagatag cattcaggcc aaatgccgga tcgacggtcg
     6181 cctcaccagg taacgtcccg gcagcggttc cagggttaat cgccaaccag cgccccggat
     6241 aagcatcacc actgccaatc tccacgcctt tcatcaaaat gcgatagcgg gcaggttgca
     6301 gatccatatt gtcgcgaatg tgcaccactg gcggcagaaa tcccatctcc tgggcaaatt
     6361 tcttgcggat actgcgtata cggcccaaca actcaccatc ctgctggaaa tcgaccatcg
     6421 ggatcagtcg ataacccact tccattccca gagaatcttc cagttgtaca tcgttccacg
     6481 tcgcttcgac aacggtatta ttctctgcca tttttaccgg tttgggttcg gcaggcgctt
     6541 tttgttcgca tccgcgtatc caccaggcca gccccagcaa tccggcagtg aacagcaaaa
     6601 ataccaggtt cggcattcca ggcaccaagc cgagtaaacc gagcacggcg gcgcttaaca
     6661 acataacgct tgggttactg aaaagctgat tcaccatctg ctcgccaaca tcctgatcgg
     6721 tgctgacacg cgtaacgatg acccccgcgg cggtagaaat caccagcgcc ggaatttgtg
     6781 ccaccagacc gtcgccaatg gtcaatagcg tataactttc cgccgcgtgt cccatgctca
     6841 tgccatgttg cagcacgccg accagcaacc cgccgacaac gttaatgacc atgatgagga
     6901 tcccggcgat ggcatcgccg cgaacaaact tacttgcccc gtccattgag ccgtaaaaat
     6961 cggcttcctg agtcacttcg gagcggcgtt ttttcgcctc atcttcacca atcaatccag
     7021 cgttaaggtc ggcgtcaatc gccatctgct tacccggcat accatcgaga acaaagcgcg
     7081 cacccacttc tgcgatacgc ccggcacctt tggtaatgac cataaagttg atgatcacga
     7141 gaatgacaaa caccacgata cctatagcga aattgccacc aacgaggaag tgaccgaacg
     7201 cttcgaccac cttccctgcc gccgccgcgc cggtatgccc ttccatcaaa atgatacggg
     7261 ttgaagccac gttaagtgcc agacgcaaca acgtagtaaa caacagaatg gtcggaaacg
     7321 cagcaaactc aagcgtgcgc tgggtaaaca tcgccaccag caacaccatg atcgacaagg
     7381 caatattgaa ggtaaacaac aggtcgagta tgaatgcggg cagtggcagc accatcatcg
     7441 acaagatcaa caggatcaaa atcggtccgg caaggatctg ccattgtgtc gatttcaggt
     7501 ttgcgggcag gcgcagcatc gcggccagat tactcatggg tcggtttctc gttaataaaa
     7561 tccagggctt ccggcaccgg aagatgagta ggttgtacag ggcgctgtcc accagccaga
     7621 cgccagcgtt tcagttgcca gatccaggcc agcacttccg ccaccgcggc gtacagttga
     7681 cccgggattt gttgaccaat ctccgcatgt cgatacagcg ctcgcgccag cggcggcgct
     7741 tcaagcgtcg ggacgttatt ttcagcgcca atttcacgaa tgcgcagcgc gaccagccct
     7801 gcacctttag cgaccacttt cggtgcgctc attttgtttt cgtcatactg caacgctacc
     7861 gaatagtggg tcgggttatt gacaatgaca tccgctttcg gcacatcggc catcatccga
     7921 cgccgtgcgg cagctcgctg catctgacgg atccgtcctt taacatgggg gtcgccttcg
     7981 ctttgtttga actcatcacg aatatcctgc cgcgacattc gcagcttttt caggtggctg
     8041 aagatttgga aaaagacgtc aaatcccacc attggaatga caccaagcac caccagcagt
     8101 gcgcatagcc ctaccaaatc catcgcatta cccatggcgg taatcggaga ctcggccagt
     8161 aagcgcatca tctgcggcca gtgatgccag agaaaaaacc ccgtcacgct gccaaccaag
     8221 atggttttca aaattgcttt aagcaactcc gcgccagtct gtgccgagaa catccgttta
     8281 atgcccggta gcgggttgag tttggaaaac ttcggctgca aggattttcc gctaaatacc
     8341 agccccccca gcatgaccgg agaaatgagc gctaccagca ccacgccgct aatcagcggt
     8401 agcagcgcca gcatggcttc tctgatcagc agaataatct gcccgaggat cagattcggg
     8461 tctttgataa tactgtgatc aaaatgcagc ccagcggaga gcatgcccga caatcgacgg
     8521 gccagcgaca caccgccgaa ccagataaca cacacgccca ccagcaaaat cagcagtgag
     8581 gtcagttcac gggaacgcgg gatttagggc ttttgctgcc acacatcaag catagtgtgc
     8641 gtttgtcgga tgcggcgtca tcgccttatc agaccgcctg atatgacgtg gtcacgccac
     8701 atcaggcaat acaaatcaaa atccaagact atccaacaaa tcgtccacct gatcctgact
     8761 ggctaccaca ccggctttgc tggtatcgac ctgaggtcca ttaagcaaac tctggttttc
     8821 acgttttgga cgcgactcct gttccgggat gttttccaac agcaccatca gcaactggcg
     8881 ttcgatctcc tgaatgacat ccatcatccg cttaataacc tgcccggtga gatcctgaaa
     8941 atcctgcgcc atcatgattt ccagcagttg cgcgttagta aagctggtat gcgcgggtac
     9001 atctgccaga aattgtcgtg tatctgttac cagttcacgg gcgtcggcaa ggtcaatcgg
     9061 atcggcaaac cagtcatccc aacgttgggt taacgctttt gctgatttct ccatttgatc
     9121 ctgatgcggt tgtgacgcct caacactgtt cagcgcccgc tccgcagcct gggcggtcat
     9181 ctgcacaaca tagtacaaac gatcgcgcgc atcggggatg gcttccgccg cttcggcaat
     9241 ggcctgatcc agccccagtt cccgcaaact gtcgcgcagc atacgcgtca ggctgccgat
     9301 gcgcgcaatg atatcgccag ctgaatgctc gtcagcaggt ttgattgatg gttgcatcat
     9361 agtcgcatcc tcacatgtcc agtttatcaa agattttgtt gagtttttcc tccagcgtcg
     9421 cggcggtaaa tggcttcacc acatagccac tggcccccgc ttgcgccgca gcaatgatgt
     9481 tctctttctt cgcttctgca gtcaccatta acactggcaa tgccgacatc gcgccatccg
     9541 cacgaattgt tttcagcaat tccaggccat ccatattggg catgttccag tcggagataa
     9601 caaatccata accgcctgcc tgcaacttat tgagagcgtc gacgccatct tccgcttcct
     9661 caacattatt gaatcccagc tctttcagca ggttacgcac tatgcgtcgc atggtggaaa
     9721 agtcatccac aaccaaaaat ttaagttctt tatccgccat ttcacactcc tgatttaaat
     9781 acgtatcgcc tgtccggcac taatttttgc caacatttgc tggcttacct ggctaagatc
     9841 gaccacttcg cagacaccac ccatattgat ggcctcgcgc ggcatgccga acaccacgca
     9901 acttgcttcg ttttgcgcaa gggtccatgc ccccgcctga cgcatcgcca acattcccac
     9961 cgggccgtcg tgaattttga tttgataatt tgcgccacta cgcgccagtt ccatatgccg
    10021 atcgcccggc gcaatatagg catgccccgg caagacacgt tctccgtctt cggcttcttt
    10081 aaccccgatc tggcaaagct tattaagtct gtcggcaaaa gagcgggtga aaccgggcgg
    10141 catatgttgg gtaattaaca atgccgggct ggaaagcggc aacggttgca gtacgtgacg
    10201 aattgcctca gttccacccg ttgaagcacc aatcgcaatc agtttttcag aactcaacaa
    10261 cggacccgcc ttcagcgttg tcggtgctga caatggctta tgtgctgcaa ggctcgcctt
    10321 tgctgccgta cgcacctttt cagcaatcat ttcgctatac gccagcattc cttcgcgaat
    10381 acccagttgc ggtttggtga caaaatctat tgcccccagc tccagcgcgc gcagcgtgac
    10441 ttctgatcct ttgccggtca aggaagaaac catcacaacg ggcattggac gcaaacgcat
    10501 taatttttcg aggaaatcca gtccgtccat ccgcggcatt tcaacatcca gcgtcagcac
    10561 atcgggattg aatttcttaa tcaagtcacg cgcgaccagc ggatcaggcg cggtcgccac
    10621 catttccatg tcgctatggc tgttgatgat ttctgtcatg atctggcgca tcagtgccga
    10681 atcatcgaca gataacaccc tgattttgct catcgttaat ccttacttag cgcatacacc
    10741 gtctgaccac gcagcgtgaa gcggcgctca aggtggctaa agttttcaga gtgacccgca
    10801 aacagcaatc cgtcgggttt aaggagcgga acaaagcggc gcaaaatctc ctgctgggta
    10861 ttttgatcga agtagatcat gacgttacga cagaagatcg catcaaacgg ccccggcacg
    10921 gtgtactgtt tcgccagtag attcagcggg gcaaaatcaa catagttcgc cagctcctga
    10981 cgcacgcgta ccagcccttc atgcggtccc gtccctcgca tgaaataccg ttgcagttgc
    11041 tgcggcgtca ggtttttcaa ctcttcatgg cgataaatac cgcttctggc tttttccagc
    11101 acttcggtgt cgatatcact ggcaaacact ttccagcgtc cgggcgcggt gcccaatgtg
    11161 tcagccagcg tcatcgcaat gctgtacggc tcttcgccgg ttgaagccgc cgcgctccat
    11221 acgcgatact cgccagaacg gcgacgtgcg tgatccgcga gcagagggaa atgatgtgcc
    11281 tcacggaaaa atgccgtcag attcgtggtc agcgaattga taaacgcctg ccactcaccg
    11341 ctgtgctgat tagattccag caagttcaga taatgaccga aatccgtcag tcccagcgaa
    11401 cgcaaacgac gaaccagtcg gttgtaaacc atgtcgcgtt tatgatcggc caggacgatc
    11461 ccggctcgtt gatagatcaa ttgacttatc cgccgaaaac tgtaccgaga acaaccaggt
    11521 aacctaataa gataagcacg acatcatcct tccactgttg accatgacag gatgttcagt
    11581 cgtcaggcgt taacgcgcga ttggggcaaa aaaaagcagc ggtacgtcgt taccgctgct
    11641 ggcatgttgc gccacaccgt atcagttaaa cagcctgtac tctctgttca tccagcagtt
    11701 gtgggataat atcggcagga ttctgggaaa gtttacgtct ttttactgcc cgggatggcg
    11761 gttgacataa gctgcaggca aagctgccaa caggctggtg agcgtgggta ataaaattgc
    11821 cgccgcagca gttgcagctg gaaagttgca gtaatccact ttcaacaaac cgccccaatg
    11881 tccaggcacg ggttaatgcc agcagtggtc cttcttctgc ttgtgggcac tgttcaaggt
    11941 ataaacggta ggctttgatc accgcatcga cgccattaca caaacctgtt ttcagtaaaa
    12001 actgccatgc attacagaac atcgaagcat gaacgttttg ttcccaggtc ataaaccagt
    12061 cggttgagaa tggcagcatg cctttcggcg gtgggcttcc gcgcagttct ttataaagtt
    12121 ttatcaggcg tccgcgactt aactgtgttt cgctttccag catctgcaaa cgagcgccca
    12181 gggtgatcaa ttcaatatcc cgcgcttcct gaacaatgct tttttcactc atgatcaggc
    12241 ccttttcttg cgcagcgctt cttcaggctg attaacatca ttcagcaagc gtgttgagag
    12301 catgatgccg gtatgaattt gctggagatc gttaacgcgg gaatcttgcg tcaactgagt
    12361 aatcgtctgg tggctgtcaa aacggaagtg acaaaccagt tgattggttt ctgccagctt
    12421 aaccatttgc ggaagagtca gtgccgctaa cgttgtcgcc atttcttcat ttatgccgag
    12481 acgaaacata gcggacgctt tgtcctgaac aatcaaacgc tgtgcaagta gtaaatatga
    12541 caagttgatg tcataaatgt gtttcagcaa ctcggaggta tgcattattc ccacccagaa
    12601 taaccaactt tatttttatg cggtttcacc gcaccccgtg atgtcgccgg gaagccccgg
    12661 taaaaaataa ttagcattag aatagtgcga taagctgcaa taagcagaac cacctttttg
    12721 gtttaatatg tccttacaaa tagaaatggg tctttacact tatctaagat ttttcctaaa
    12781 tcgacgcaac tgtactcgtc actacacgca catacaacgg aggggggctg cgattttcaa
    12841 taatgtgtga tgcagatcac acaaaacact caattactta acataaatgt ataagccata
    12901 cttttgtttt gggtgtattt caatctgtta aaaagttttt cgctacgcta gcaagcaaaa
    12961 atgaaactgg aataatcgaa atgggatgtt gcgcacagtt aaaataactc accgtaaata
    13021 atcatctgct ataaataatc actttcatgc aataccagat aagctatttt taaacagaca
    13081 cttaccgcac aacaaactaa ttaaatacaa agaaaggcaa caatcaactt aatgttaatg
    13141 aaatgtttta catatattaa ccacttgttt aatgcggaga atcagtacac tattttctta
    13201 taattacatt tgaaattata tgatcaccgg gagtgattga ttaattgtct ttactaataa
    13261 tcagactaat atttacctgt ttgaccgagt tgggattgcg tcgtttctcc attaggagta
    13321 aagctttaat gtcacctgaa gttcacagaa taaggaacag gttatgagct atagcaatat
    13381 tcttgtcgct gttgcggtta caccggaaag tcagcaactg ctggcaaaag cggtatctat
    13441 cgccaggcca gtaaagggac acatcagttt aattactctc gcttccgacc cggaaatgta
    13501 caatcaatta gccgcgccga tgcttgaaga tttacgcagc gtgatgcaag aagaaacgca
    13561 aagctttctt gataagttaa ttcaggatgc ggggtatccc gttgacaaga cgtttattgc
    13621 ctacggtgag ttaagcgaac atattctgga agtatgtcac aaacatcatt tcgatttggt
    13681 gatttgcggt aatcacaatc acagtttctt ttcgcgagca tcctgctcgg cgaaaagagt
    13741 gattgcctca agtgaggtcg atgtgctgtt agttccactt acgggtgatt aaccgctcct
    13801 acgcaagctt tggaaaggta gcaactttat cgcgctgctg gctttccgcg cttcgcggaa
    13861 ctatctgctt taggtcgcta atgaagcact cctgccagtg gttaatatcg tttttcacga
    13921 taacgtccag catttctgca tgacgggaaa tacgttccgc cagcgacata gtcaatgcac
    13981 gatccagcgc agctgcaact tcgtcacgat cgtaggggtt aacaattaac gccgacgtta
    14041 actcgtttgc cgctcccgca aattgcgaaa gaacaagaac gcccgggttg gctgggtcct
    14101 gagcagcaac atactctttt gctaccaggt tcatcccgtc acgcagtggc gtcactaagc
    14161 ccacgtcaga gtagcggaat attttcatca gtaatttacg gtcaaaatgc tgattcaaat
    14221 aataaagcgg cgtccagcct aattgcccgt atttaccatt aattcgtcca gcttcatttt
    14281 cgagctgatg acgaatatcc tgataggctt gcacatcacc acgcgacgtt ggtgcaatct
    14341 gg
//
LOCUS       DADMJB010000105        14222 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.105, whole genome shotgun sequence.
ACCESSION   DADMJB010000105 DADMJB010000000
VERSION     DADMJB010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14222)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14222)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14222
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.105"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            505..1329
                     /gene="gadX"
                     /locus_tag="JN078_002758"
     CDS             505..1329
                     /gene="gadX"
                     /locus_tag="JN078_002758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance transcriptional activator GadX"
                     /protein_id="HAY9041906.1"
                     /translation="MQSLHGNCLIAYARHKYILTMVNGEYRYFNGGDLVFADASQIRV
                     DKCVENFVLVSRDTLSLFLPMLKEEALNLHAHKKISSLLVHHCSRDIPVFQEVAQLSQ
                     NKNLRYAEMLRKRALIFALLSVFLEDEHFIPLLLNVLQPNMRTRVCTVINNNIAHEWT
                     LARIASELLMSPSLLKKKLREEETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGY
                     HSVSYFIYVFRNYYGMTPTEYQERSAQGLPNRDSAASIVAQGNFYGTDRSAEGIRL"
     gene            1697..2425
                     /gene="gadW"
                     /locus_tag="JN078_002759"
     CDS             1697..2425
                     /gene="gadW"
                     /locus_tag="JN078_002759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance transcriptional activator GadW"
                     /protein_id="HAY9041907.1"
                     /translation="MTHVCSVILIRRSFDIYHEQHKISLHNESIVLLEKNLADDFAFC
                     SPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESG
                     VNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAE
                     RMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYF
                     INTFRQYYGVTPHQFAQHSLGTFS"
     gene            complement(2788..5901)
                     /locus_tag="JN078_002760"
     CDS             complement(2788..5901)
                     /locus_tag="JN078_002760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit"
                     /protein_id="HAY9041908.1"
                     /translation="MANYFIDRPVFAWVLAIIMMLAGGLAIMNLPVAQYPQIAPPTIT
                     VSATYPGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDI
                     AQVQVQNKLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVAS
                     NIKDPLSRTAGVGSVQLFGSEYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQ
                     LGGMPQAADQQLNASIIVQTRLQTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDYS
                     TVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIE
                     ISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINT
                     LTMFGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLS
                     AVFMPMAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATILKAAPEGGHKPN
                     ALFARFNTLFEKSTQHYTDSTRSLLRCTGRYMVVYLLICAGMAVLFLRTPTSFLPEED
                     QGVFMTTAQLPSGATMVNTTKVLQQVTDYYLTKEKDNVQSVFTVGGFGFSGQGQNNGL
                     AFISLKPWSERVGEENSVTAIIQRAMIALSSINKAVVFPFNLPAVAELGTASGFDMEL
                     LDNGNLGHEKLTQARNELLSLAAQSPDQVTGVRPNGLEDTPMFKVNVNAAKAEAMGVA
                     LSDINQTISTAFGSSYVNDFLNQGRVKKVYVQAGTPFRMLPDNINQWYVRNASGTMAP
                     LSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLPAGVGYS
                     WTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGALLAT
                     DLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKEGKTPIGAIIEAARMRLRP
                     ILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIYFVPVFFVVVEHL
                     FARFKKA"
     gene            complement(5926..7083)
                     /gene="mdtE"
                     /locus_tag="JN078_002761"
     CDS             complement(5926..7083)
                     /gene="mdtE"
                     /locus_tag="JN078_002761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug transporter subunit MdtE"
                     /protein_id="HAY9041909.1"
                     /translation="MNRRRKLLIPLLFCGAMLTACDDKSAENAAAMTPEVGVVTLSPG
                     SVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELN
                     SAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAV
                     EQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQD
                     FLRMKEEVASGQIKQVQGSTPVQLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIF
                     PNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQGKATALILDKDDVVQLREIE
                     ASKAIGDQWVVTSGLQAGDRVIVSGLQRIRPGIKARAISSSQENASTESKQ"
     gene            7143..7421
                     /locus_tag="JN078_002762"
     CDS             7143..7421
                     /locus_tag="JN078_002762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041910.1"
                     /translation="MRDLQTSGIVGLSASKVGYRHSDRHGEVNDKKNVAVLPTVPASI
                     RATKGSTGGYTYQGNKVVLASPLVITGGNEISICIPRHASHQFQLLMS"
     gene            complement(7422..7949)
                     /gene="gadE"
                     /locus_tag="JN078_002763"
     CDS             complement(7422..7949)
                     /gene="gadE"
                     /locus_tag="JN078_002763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance transcriptional activator GadE"
                     /protein_id="HAY9041911.1"
                     /translation="MIFLMTKDSFLLQGFWQLKDNHEMIKINSLSEIKKVGNKPFKVI
                     IDTYHNHILDEEAIKFLEKLDAERIIVLAPYHISKLKAKAPIYFVSRKESIKNLLEIT
                     YGKHLPHKNSQLCFSHNQFKIMQLILKNKNESNITLTLNISQQTLKIQKFNIMYKLKL
                     RRMSDIVTLGITSYF"
     gene            complement(8748..9320)
                     /gene="hdeD"
                     /locus_tag="JN078_002764"
     CDS             complement(8748..9320)
                     /gene="hdeD"
                     /locus_tag="JN078_002764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-resistance protein HdeD"
                     /protein_id="HAY9041912.1"
                     /translation="MLYIDKATILKFDLEMLKKHRRAIQFIAVLLFIVGLLCISFPFV
                     SGDILSTVVGALLICSGIALIVGLFSNRSHNFWPVLSGFLVAVAYLLIGYFFIRAPEL
                     GIFAIAAFIAGLFCVAGVIRLMSWYRQRSMKGSWLQLVIGVLDIVIAWIFLGATPMVS
                     VTLVSTLVGIELIFSAASLFSFASLFVKQQ"
     gene            9575..9907
                     /gene="hdeA"
                     /locus_tag="JN078_002765"
     CDS             9575..9907
                     /gene="hdeA"
                     /locus_tag="JN078_002765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-activated periplasmic chaperone HdeA"
                     /protein_id="HAY9041913.1"
                     /translation="MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLA
                     VDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGE
                     WDKIKKDM"
     gene            10023..10349
                     /gene="hdeB"
                     /locus_tag="JN078_002766"
     CDS             10023..10349
                     /gene="hdeB"
                     /locus_tag="JN078_002766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-activated periplasmic chaperone HdeB"
                     /protein_id="HAY9041914.1"
                     /translation="MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFID
                     LNPKAMTPVAWWMLHEETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQA
                     SNDLPN"
     gene            10413..11060
                     /locus_tag="JN078_002767"
                     /pseudo
     CDS             10413..11060
                     /locus_tag="JN078_002767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417965.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MgtC/SapB family protein"
     gene            complement(11102..11632)
                     /locus_tag="JN078_002768"
     CDS             complement(11102..11632)
                     /locus_tag="JN078_002768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAY9041915.1"
                     /translation="MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDGMLHQNAFVI
                     IDTLMNNVFHSNFLTQIERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALI
                     NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKITLKTFYCHKHNIMMILNL
                     KRINELVRHQHIDYLV"
     gene            complement(11788..12354)
                     /gene="slp"
                     /locus_tag="JN078_002769"
     CDS             complement(11788..12354)
                     /gene="slp"
                     /locus_tag="JN078_002769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312404.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein Slp"
                     /protein_id="HAY9041916.1"
                     /translation="MNMTKGALILSLSFLLAACSSIPQNIKGNNQPDIQKSFVAVHNQ
                     PGLYVGQQARFGGKVINVINGKTDTLLEIAVLPLDSYAKPDIEANYQGRLLARQSGFL
                     DPVNYRNHFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHLREVVNTTYNLWDYG
                     YGAFWPEPGWGAPYYTNAVSQVTPELVK"
     gene            complement(13032..13826)
                     /locus_tag="JN078_002770"
     CDS             complement(13032..13826)
                     /locus_tag="JN078_002770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000020601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041917.1"
                     /translation="MSIDFTPGIINTYHGNIYNCTTNTDNVKTPDTPKWPCDNWEEQQ
                     PINSTFSGEGYNPEQFDLAQQQLQQINACHTNTTYTNADYSKVVVQLVSLINNIETIS
                     STPLTQQTQSILNQINNIRYEKNKSAECRIIVVANPKPDKAIITKISVEEGIPITFSV
                     QTMFSDTNFIAEQRADLPTNIKDIQSLYQKMTKLYIEHSENKNRMKVFAGTNFIDFNM
                     TGQNLSGFVLTLSRFYFEDLLNINFTDANLGDTIFYIKNTLPPQII"
BASE COUNT         3947 a         3021 c         3154 g         4100 t
ORIGIN      
        1 attatgtgtc gtcgcggctt cgaaatggac tttgctgaac tgttgctgga agactacaaa
       61 gcctccctga aatatctcag cgatcacccg aaactgcagg gtattgccca gcagaacagc
      121 tttaaacaca cctgataaca taacgttgta aaaaccgaat gcccagcctt taaaaaaaca
      181 gctgggcatt cggttgctta ttaatcgcaa taatatattg gctgtctatt catcgtgttg
      241 ataagatata tgttatatga atgtttatta aatgtagcga ttgcctttaa tgtcacgaaa
      301 agggattatt tgcttgctat taatttcact gcgttcttaa acgcgttttt gtattataaa
      361 tccagtcatc ctgcccgtag aacatcacac atcatcatcc tgttctcccg cttcgtttaa
      421 atttatttat caatcaattt gacttaagag ggcggcgtgc tacattaatt aacagtaata
      481 tgtttatgta atattaagtc aactatgcaa tcattacatg ggaattgtct aattgcgtac
      541 gcaagacata aatatattct caccatggtt aatggtgaat atcgctattt taatggtggt
      601 gacctggttt ttgcggatgc aagccaaatt cgagtagata agtgtgttga aaattttgta
      661 ttagtatcaa gggatacgct ttcattattt ctgccgatgc tcaaggagga ggcattaaat
      721 cttcatgcac ataaaaaaat ttcttcatta ctcgttcatc actgtagcag agatattcct
      781 gtttttcagg aagttgcgca actatcgcag aataagaatc ttcgctatgc agaaatgcta
      841 cgtaaaagag cattaatctt tgcgttgtta tctgtttttc ttgaggatga gcactttata
      901 ccgctgcttt tgaacgtttt gcaaccgaac atgcgaacaa gagtttgtac ggttatcaat
      961 aataatatcg cccatgagtg gacactagcc cgaatcgcca gcgagctgtt gatgagtcca
     1021 agcctgttaa agaaaaaatt gcgcgaagaa gagacatcat attcacagtt gcttactgag
     1081 tgtagaatgc aacgtgcttt gcaacttatt gttatacatg gcttttcaat taagcgagtc
     1141 gcagtgtcct gtggatatca cagcgtgtcg tatttcattt acgtctttcg aaattattat
     1201 gggatgacgc ccacagagta tcaggagcga tcggcgcagg gattgccgaa ccgtgactcg
     1261 gcggcaagta ttgttgcgca aggaaatttt tacggcactg accgttctgc ggaaggaata
     1321 agattataga attttactca gacataaaaa aaacctggca taggggaccg ggaagaggat
     1381 agtctgccgt ctccagacta ataaaccgct ataacactcc ctgttggcac gggaaacttt
     1441 gtgctctcag taagttaaat ataactttta ctggaaataa gatcagccat ttttttataa
     1501 acataagcta tacgctgtgc gaaaatatat tcgtgctgca tttacttatt atcaattaac
     1561 tgttatgcaa aactactttg tggataaatt ttggtcctac caaatctggc agtttttgcg
     1621 ctaagaaaca gtctggcaac atttcattag tatactgaaa ttgaaataat cgcagtatga
     1681 aatataaggg ataatcatga ctcatgtctg ctcggtgatc ctcattcgtc gttcattcga
     1741 tatttatcat gaacagcata aaatatcgct gcataacgag agtatcgtgc tgctggagaa
     1801 aaatttggca gacgattttg cgttttgttc accggatacg cgacgactgg atatcgatga
     1861 gctgacagtt tgccattact tacaaaatat tcgtcagcta ccacgcaatt tagggttaca
     1921 tagcaaagac cgtctattaa ttaaccagtc accccccatg ccgctggtga cggcgatttt
     1981 tgatagcttc aatgaatccg gggtaaattc accgatactg agcaatatgc tctacctttc
     2041 ctgtttatcg atgttttctc ataagaaaga actgatcccc ttacttttca atagcatcag
     2101 cactgtttca ggaaaagttg aacgccttat tagctttgat atcgccaaac gttggtatct
     2161 gcgcgatatc gcggaaagaa tgtataccag cgagagtctc atcaaaaaaa agttgcagga
     2221 tgaaaatacc tgtttcagta aaatattact cgcttccagg atgtcgatgg ccagacgatt
     2281 actcgagtta cgtcaaattc ctctgcatac tattgcagaa aaatgtggct atagcagtac
     2341 gtcgtacttt ataaacacat ttcgacaata ttatggtgta acgccacatc agtttgcgca
     2401 acattcgcta ggtacctttt cctgacatat tttgcatttg aatattggtc aggatctcac
     2461 acctgcttca tgtgaaactc ttccctgatg atttctgccg ggctaccggc tagttctctt
     2521 tcgcagtttg ccaggcggta taggtatttt caggaggaaa agactcggca tgtttgggat
     2581 tattaagctg acaattcata cgattacggg aatgtgggtc agtattgtgc tgttcaaatt
     2641 gatgacgaat ggctggagtg gtttctactt tcagtgctgt gtactaagcc tggtattcct
     2701 gacggttagc tggttgttga gtggtgaatg gttagcagga aagagtaagg ctgaaccttc
     2761 acgttcaacc ttactctcat ttacacgtta cgctttttta aagcgggcaa agagatgttc
     2821 cactacaacg aaaaagaccg gaacgaagta aattgccagc actgttgcgg caaacatccc
     2881 gcccatcacg ccggtaccta ccgcgttttg cgcgccagaa ccggcaccat gactgataac
     2941 cagcggcagc acgccgagaa taaaggccag agaggtcatc aggattgggc gtaaacgcat
     3001 ccgcgccgct tcgatgattg cccctatcgg cgttttccct tctttctgca tcatctcaac
     3061 ggcaaattcg acaatcagga tggcgttctt ggcggaaagc ccgatggtgg tcagcaaacc
     3121 aacctggaag tagacgtcat tacttaagcc gcgcagatcg gtggccagta atgcgccaac
     3181 gacgcctaac ggaacaacca acatcaccga gaacggaatt gaccagctct catagagtgc
     3241 ggcgagggcg aggaacacca cgaccagtga aatggcatac agtgcaggag cctggtttga
     3301 ggataacgct tcctgatacg acagtccggt ccatgagtag ccgacgcctg ccggaagttt
     3361 agcgaccagg tctgccataa atttcatagc gtcaccggta cttttcccgg ccgccgcttc
     3421 acctaaaatc tccattgacg ggatgccgtt gtagcgttcc aatcgcggtg aaccataggt
     3481 ccattcggta gacgagtagg cagaaagcgg tgccatcgtg ccagaggcgt tgcgtacata
     3541 ccattggttg atgttatccg gcaacatacg gaacggcgtg cctgcctgga catacacttt
     3601 tttcacccgc ccctggttga ggaagtcgtt cacgtagctg ctgccgaagg cggtggaaat
     3661 tgtctggttg atatcagaca gcgccacacc cattgcctca gctttcgcgg cgttgacgtt
     3721 cactttgaac atcggcgtat cttccaggcc gttcgggcgt accccggtga cctggtcagg
     3781 cgattgcgct gccagtgata acagctcgtt tcgtgcctgg gttagttttt cgtgccccag
     3841 gttaccgttg tccagcagtt ccatatcaaa acctgacgcg gtacccagtt cagccaccgc
     3901 gggtaagttg aacgggaaga cgacggcttt attgatactg cttaacgcaa tcattgcccg
     3961 ctgaatgatc gcggtaaccg agttttcctc accgacacgt tcagaccacg gcttgagact
     4021 gataaacgcc aggccgttgt tttgcccctg gccgctgaag ccaaagccgc caacggtaaa
     4081 caccgactga acattatctt tctcttttgt aagataataa tccgtcacct gttgcagcac
     4141 tttcgtggtg ttaaccatgg tggcaccgga aggtaactgc gcggtggtca taaatacccc
     4201 ctgatcctct tctggtaaga aagaggtcgg tgtacgcagg aacagcaccg ccatcccggc
     4261 gcaaatcagc aggtagacca ccatgtagcg accggtacaa cgcaacagcg agcgggtgct
     4321 atcggtatag tgctgagttg atttttcaaa cagcgtgttg aagcgtgcga acagggcgtt
     4381 aggtttgtga ccgccttccg gcgcggcttt cagaatggtg gcgcacaggg caggggtcag
     4441 gctcattgcc acaaatactg aaagcagcat ggaggagatc agcgtgatgg agaactggcg
     4501 gtagatctcc ccggttgcgc cgctcataaa ggccatcggc ataaacactg cggaaagaac
     4561 aacagcaata ccgaccagcg cacgttggat ctgccccatc gatttatgcg tcgcttcctt
     4621 cggtggtagc ttatcttccg caatgacacg ctcgacgttc tccaccacca cgatggcgtc
     4681 atccaccagt aaccctatcg ccagcaccat cccgaacata gttaacgtgt tgatggtgaa
     4741 accgaccgcc gacaagatcg caaacgtccc gagaataacc accggtacgg caatcgtcgg
     4801 gatgattgtg gcacggaaat tctgcaaaaa cagatacatg accaggaaga cgaggatgat
     4861 agcctcaacc agtgttttaa aaacttcctg aatagaaatt tcgataaacg gcgtggtgtc
     4921 gtaaggataa accgtcttca gacttgcggg gaaataggct gataagcggt tcagctcctc
     4981 tttgactgcc cgcgaggtat ccagggcgtt tgctccggta gccagtttga tggcgatccc
     5041 ggcagcaggt ttgccgttat agcgcgccac ggtggaataa tcttccgctc caagttcgac
     5101 gcgggcgaca tcacgcagca gcacttgcga accatcttgc tgaactttca acaggatttt
     5161 gccaaattct tccggcgttt gcagacgcgt ctgcacaatg atcgaggcgt ttagttgctg
     5221 gtctgccgcc tgtggcatgc cacccagttg accaccggaa atctggttgt tttgcacctt
     5281 aatctgggaa ataacatcgg aaggtaccag attgtattta ttgagttttt gcgggtccag
     5341 ccagatacgc atggcgtact cggaaccaaa gagctgtacg ctaccaacgc ccgcggtacg
     5401 gcttagcggg tctttgatat tagacgctac atagtccgcg atatcgtact ggttgaggct
     5461 gccgttatca gaaataaacg ccgctaccat cagaatatta ctgctcgact tatcaacgct
     5521 aatcccctgc tgctgcaccg cttcaggtaa tgaaggcata gcgagttgca gtttattttg
     5581 cacctgaacc tgtgcgatat caggagatgt cccagtctcg aaggtcagag tgatagaggc
     5641 attacccgcc gcatcactgg ttgaagacat gtacatcagg ccatcaagcc cattcatatt
     5701 ttgctcaatc acctgagtga ccgagtcttc taccgtttgc gcatcggcac ctggataggt
     5761 agcgctgacg gtaatggtcg gtggcgcaat ctgcggatac tgcgcaaccg gtaagttcat
     5821 gatcgccaga ccacctgcaa gcatcataat aatggcaagt acccaggcaa aaaccgggcg
     5881 atcaataaaa tagttagcca tgaaagtccc cttaagcctg caacgttatt gtttcgattc
     5941 ggtgctggcg ttttcctggc tggaggaaat tgctcgtgct ttgatacccg gacgaatgcg
     6001 ttgcaaaccg gaaacgatca cccgatcgcc agcctgcaag ccagaggtga caacccactg
     6061 gtcgccgatg gctttgctgg cttcaatttc gcgtagctgc acaacatcgt ctttatccag
     6121 aatgagcgcc gttgctttac cctgggcgtt gtgggtgacg ccttcctgcg gcaccagtaa
     6181 tacattctgg cggctacctt catccactaa tgccgtgacg tacatgccag gcagcaagtc
     6241 accatttggg ttggggaaaa tcgcccgtaa cgtcacggag cccgtggttt catccaccgt
     6301 cgggtcggag aatttcagtg tgccggtctg gctgtagcgt ttaccatttt ccagattgag
     6361 ctgtactggc gtactgccct gaacctgttt gatttgccca ctggcgacct cttctttcat
     6421 gcgcaagaaa tcctgcaccg actgcgtgag atcgacataa atcgggtcca gacgttgtac
     6481 ggtaaccagc gaatctgcct gattagcggt aacgagtgcg ccgacggtca ccgacgattt
     6541 cccgctgacg cccgtaatcg gcgaggtgac attcgcgtat tgcagattga tcgtcgcctg
     6601 ttcaacagcc gctttggcga cggtgacatt ggcttctgct tcattcagct gggtgcgcgc
     6661 ggtgtcgtaa tcctgacggc taacgtagtt ggtcttcagc aacgatgcct ggcggttaaa
     6721 ggtgatgcgg gcattgctgg cggtagagag cgctttcgcc agcgagcctt tggcggagtt
     6781 tagctcggcc tgtaaaggtg caggatcaat ctgatacagc gaatcgccct ggttcacttt
     6841 atcgccttcg ataaagttgc gtttaatgat aataccgccc acctggggac gtatctcggc
     6901 aacttcataa ggaacggttc taccgggcaa ttcgctcaac acattgaccg aaccggggga
     6961 gagtgtgacg acaccgacct caggcgtcat ggcggcggcg ttttccgccg atttgtcatc
     7021 gcaggcggtg agcatcgcgc cgcagaataa caacggtatt aacagctttc ttcttctgtt
     7081 cattttagtc cctgaaaatt cttgagaaat aacggttctt taaattgcgc gcgaggagag
     7141 atatgaggga tttacagacc agcggcatag tggggttgtc agccagtaag gtgggataca
     7201 ggcacagtga tcgacatggt gaggtcaacg acaaaaaaaa tgttgccgtt ctgccaacag
     7261 ttcctgccag cattcgggca acgaagggtt ctactggtgg atacacatac caggggaata
     7321 aagtcgtttt agcctctcct ttagtaatca ccgggggtaa tgaaatcagc atctgcatcc
     7381 ctcgtcatgc cagccatcaa tttcagttgc ttatgtcctg actaaaaata agatgtgata
     7441 cccagggtga cgatgtcgct catacgtctt agtttcaact tgtacataat gttgaatttc
     7501 tgaatcttta atgtttgttg cgaaatattg agcgtcaacg tgatattgct ttcattttta
     7561 tttttcagaa tcagttgcat aattttgaac tgattatgtg aaaaacataa ttgtgaattc
     7621 ttatggggca agtgtttacc ataagtaatc tcaagaagat ttttgatact ttctttgcgg
     7681 ctaacaaaat aaataggcgc tttagctttt agtttactga tgtgataagg tgccaaaaca
     7741 ataattctct cggcatctaa tttctccaga aatttaatcg cttcttcatc aaggatatga
     7801 ttgtgatagg tatcaatgat aaccttgaag ggtttattgc ctactttttt gatctctgac
     7861 agggaattga tttttatcat ttcgtgatta tctttcaact gccaaaagcc ctgtaaaaga
     7921 aaagaatctt tcgtcatgag aaaaatcata acttgctcct tagccgttat cgtttcgaac
     7981 atgtcatcct tttcattatt tacatccttg tccgaatcgt tgttcaatat agtaaacgcc
     8041 tataagaact ttacccttcg tgaactaata cgtctattaa cactaatcaa tacttcagat
     8101 ttatccatca cgcactccat atattgatcc taagtaagat tcctggttgt tatcagcttg
     8161 taaatagtaa acaaaaagtt aacgtttgcg gattactgcc caagaataag ttatcaataa
     8221 ccagtttgtg atctctgaag aatattacta aagttaaaat gtaatccgat ttaaatatcg
     8281 agtctccttg tttcgactta agctggcaat tggattgcca gctttctttt aacgcattga
     8341 aattacctga gtaaataacg cattcatgtc ttcaggtttt tatatagcgt ctggagacac
     8401 ggatatttat gcaatgtaat caacgccagt tgcaaaaaaa tgaacccgga ttacttattt
     8461 aaccgcccat agcatcaacg cttacggaac tctttgttca ctttcccaca gcacttttaa
     8521 aacattaaac ctgactacgg aaaatatcag ccatgataat gtttgaaatg gctaatttgc
     8581 catggagtga aaaaaattag atgaaattca gtaggttgaa ataatcacta gcaggtaatt
     8641 atttcaatga tagtgcgcaa ttgatctaca acactgcgta gcggagagag tattaatcgg
     8701 atcatagtca catcaagtga ctatgatccg ggtgacaacc ggggtaatta ttgctgctta
     8761 acgaacaaac tggcgaagct gaacaggctg gcggcgctaa atatcagttc aattcccacc
     8821 agtgtggaaa ccagcgttac agacaccatc ggcgttgcac caaggaatat ccaggcaatg
     8881 acgatatcca gcacaccaat aacgagctgt agccagctgc ctttcattga acgctgacga
     8941 taccaactca tcaggcgaat aacccctgca acacagaaca aaccggcaat aaatgccgca
     9001 atggcaaaaa tgcccagctc cggtgcgcgg atgaagaaat agccgatcaa taaataggcg
     9061 actgcgacga ggaaaccgga taataccggc cagaaattat gactgcggtt gctgaataac
     9121 ccgacaataa gcgcaatacc cgagcagatt aataatgcac ccactactgt gcttaaaata
     9181 tcgccagaga cgaacgggaa actgatacac agcaacccga cgataaacag cagcacggca
     9241 ataaactgga ttgctctgcg atgtttttta agcatctcca gatcaaactt caaaattgtt
     9301 gccttatcta tatataacat agaaccaccc tataaaatta agaagaaaat cccctgctat
     9361 caatctatgc caaaaacgcg tctaagaatg cagtcgattt aataaaaatt tcctaattgc
     9421 agtatctgat gcatctgtaa ctcattgtat tgaaataaaa atatctgatt ttgatatttt
     9481 ccatcaacat gacatataca gaaaaccagg ttataacctc agtgtcgaaa ttgatttgtg
     9541 acggctcttt cactttatag ttgaggatat tacgatgaaa aaagtattag gcgttattct
     9601 tggtggtctg cttcttctgc cagttgtgag caatgcagcg gatgcgcaaa aagcagctga
     9661 taacaaaaaa ccggtcaact cctggacctg tgaagatttc ctggctgtgg acgaatcctt
     9721 ccagccaact gcagttggtt ttgctgaagc gctgaacaac aaagataaac cagaagatgc
     9781 ggttttagat gttcagggta ttgcaaccgt aaccccagct atcgttcagg cttgtactca
     9841 ggataaacaa gccaacttta aagataaagt taaaggcgaa tgggacaaaa ttaagaaaga
     9901 tatgtaattc cgggaatgcg ttacatcgta cttccttgca tattgaacag gccggaatat
     9961 cttctttaaa agcagctatt cctcctgttc atatataatc tatatattga atgggttaca
    10021 aaatgaatat ttcatctctc cgtaaagcgt ttatttttat gggcgctgta gcggctttgt
    10081 cactggtgaa cgcacaatct gcgctggcag ccaatgaatc cgctaaagat atgacctgcc
    10141 aggaatttat tgatctgaat ccaaaagcaa tgaccccggt tgcatggtgg atgctgcatg
    10201 aagaaacagt atataaaggt ggcgataccg ttactttaaa tgaaaccgat ctcactcaaa
    10261 ttcctaaagt gatcgaatac tgtaagaaaa acccgcagaa aaatttgtat accttcaaaa
    10321 atcaagcatc taatgacttg ccgaattaat gaggtacaag taaaaaggag tagcaagttg
    10381 agccatcttg ctgctccttt ttgcattttt atatgacagc agaatttatt atacgtctta
    10441 tactcgcggc aattgcctgt ggcgctattg gcatggaaag gcaaatgtga ggcaaaggag
    10501 cagggttacg cacacatgta ttaattggca tgggaagcgc cctgtttatg attgtttcga
    10561 aatatggttt tgctgacgtg ctgtctttag atcacgtcgg actcgacccc agccgtattg
    10621 ctgctcaggt ggtgacgggc gtcgggttta tcggtgcagg taacattctc gttcgtaacc
    10681 aaaatattgt aggtttgacg acggcagcgg atatctggat gaccgccgct ataggtatgg
    10741 ttattggcag tggtatgtac gaattgggta tgtatggttc agtgatgacc ttgctggtgc
    10801 tggaagtctt ccatcaatta accttccgcc tgatgaacaa aaattaccat ttacagctga
    10861 cattagtgaa cggtaatacg gtatcaatgc tcgactggtt taagcagcaa aaaataaaaa
    10921 cggatttagt ttcgttgcag gaaaatgaag atcatgaagt ggtcgccatt gatatccagc
    10981 ttcatgccac aacgtcgata gaagatctgt tgcgattatt aaaaggtatg gcaggggtga
    11041 aaggcgtttc aattagctaa tctgtgtggc agcgtagtca gactcaccgt aagcctgaaa
    11101 ttcacaccag ataatcaata tgctgatggc gtaccagctc attgatccgc ttaagattga
    11161 ggatcatcat gatattgtgt ttatggcagt agaacgtttt tagcgttatt ttcagtttct
    11221 ccagaatatc ctccgttgtc atttgattcg caatgcagct cagaacctga tgttgcttgc
    11281 gcgaaagtga cacagccgct tcaggcacag agcagtaact gccattgatg agtgcgacaa
    11341 aatcgatgat agtgatagtc cgcggaacaa aggtcaccgg cactttcccc aggcagcgtt
    11401 taatattaaa gggggagaaa ataatcacat ggacaggttt taatcgttca atttgagtga
    11461 gaaaattaga atgaaataca ttattcatta atgtatcaat aatgacaaag gcattctgat
    11521 gcaacattcc gtcgatctct tcttcgttct gtatatgaac gacattacct ttgctcaaaa
    11581 tgtttttcat cgcggtgaag aacatcgtat ccctggtaat tataagaaac ataaccgact
    11641 cctggtgcgg acattaattt tataatcagt ttgccaaagg taattaacag gacagggctt
    11701 ataataataa tagttagctt gctgtgtatt aattttatgt aatgcacgat gcagatgctg
    11761 agaaagcatc tgcatctttc ggtggtgtta tttgaccagc tcaggtgtta cctgactcac
    11821 cgcattggtg tagtaaggcg caccccagcc cggttccggc cagaatgcac catagccgta
    11881 atcccatagg ttataggtgg tattaaccac ttctctcaaa tgccacacct ggatgccctg
    11941 catattcact tccaggaagt tatacgggac tttattgata aagccaggtt gttcaccctg
    12001 aatggtaccg aggatggtaa caaagtgatt acgatagttc actgggtcaa ggaagccgct
    12061 ttgtctggcg agcagtcggc cctgatagtt ggcttcaata tcaggtttcg catagctatc
    12121 caacggtaat acagcgattt ctaacaacgt atccgttttg ccattgataa cgttgataac
    12181 cttcccacca aagcgcgctt gttgaccaac atataacccc ggctggttat gaacagcaac
    12241 aaaacttttt tgaatatcag gttggttatt gcctttgata ttttgcggaa ttgaactaca
    12301 tgcggcaagc aaaaatgaaa ggctgaggat gagtgcacct tttgtcatgt tcatgttact
    12361 atccttatca acaaatatta aaaccataat agatatttct ttatagtttt catctgattc
    12421 tgaggcgata tgcctgatag taacgtaaac ctgtctgatg tttatatccc ttttgtttag
    12481 ttcaattcca ttgattttgg ggcgtggcat aagtatccat cgccccataa tataatcctt
    12541 tgttttaaaa ttacataaaa tctattttta ttcaataatt ataaagtgct aataatcaat
    12601 attatggtat tatattctga taatgatttg ataagcgaat tcttttgcca gatggtattt
    12661 ctatttccac cccataattt atatcttttt cattaggaag tggcctcttt aaataaggcg
    12721 tgtgtgacat tttttttggg ttaagcgtct cgaattgaaa tacttcgaac tgatattcag
    12781 acatttctgc ccatgtttga attttattgt atcgagagag tgtcgtagag gctttaactt
    12841 gcttataaca ttgtttttgg aattcttgct gatattttaa tatgtcattg tatgaaagat
    12901 tggttatcct ggcctctaaa aatttaatta ttgtcgaagc aatttccgct tttgctcgta
    12961 aaaagttgtc attaatggtt aataatgttg aaaataaacc ttcgatttgt ttgtcaagat
    13021 attgtccatc tttatataat ttgggggggt agggtgttct ttatgtaaaa aatagtgtca
    13081 cctaaatttg cgtcagtgaa atttatatta agtagatctt cgaaataaaa ccttgacaag
    13141 gttagaacga acccggaaag gttctgtcct gtcatattga aatcaataaa gttggttccg
    13201 gcaaagactt tcatcctgtt tttattttca ctgtgctcaa tatataactt cgtcattttt
    13261 tgatacaggc tttgaatatc ttttatatta gttggtaagt cagctcgttg ttcagcaata
    13321 aaattagtat ctgaaaacat ggtttggaca ctgaatgtta tgggtattcc ctcttctacg
    13381 ctaattttag ttatgattgc cttgtcgggt ttaggattag cgacaacaat gattcgacat
    13441 tcagcacttt tgtttttttc atatctaatg ttattaatct gattaagtat tgattgtgtc
    13501 tgttgcgtaa gtggtgtcga acttatcgtt tcaatgttat taataagact tacaagttga
    13561 accacaactt ttgagtagtc tgcatttgta tatgtggtgt tcgtgtggca tgcattaatt
    13621 tgttggagtt gttgttgcgc taaatcaaat tgttcagggt tgtatccttc tccagagaat
    13681 gtggaattaa tgggttgttg ttcttcccaa ttatcacaag gccacttcgg tgtgtctggc
    13741 gttttaacat tatcggtatt tgttgtgcag ttataaatat tgccgtgata tgtatttatt
    13801 atacctgggg taaagtcaat tgacataaca ttccttattc atcatctgtt ttatgctaag
    13861 gtttttaaat tggataatta gaacaggaat ggattttctt ctacacacaa taaatataat
    13921 gcgttatatc ttcctgatat aattaccttt aaattccctt tcatttccac ccggtaatat
    13981 ttgtgtataa aaaaagcagt gatagtatcg taaaggaaaa cgttaacaac tatcaaaaag
    14041 cgctcatttt aaaaagttat tatgttctcc gatagtgtgt gaagtaatat ttttgtgatg
    14101 ttttagatgt gtaataatga accaggttaa agtgtattta aaaatgtgtt gtattagcga
    14161 ctgaaatctg ccttttaaaa aggaggaggg tactgagaca aagagtcatt gcttctccga
    14221 ta
//
LOCUS       DADMJB010000106        14198 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.106, whole genome shotgun sequence.
ACCESSION   DADMJB010000106 DADMJB010000000
VERSION     DADMJB010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14198)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14198)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14198
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.106"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(92..388)
                     /locus_tag="JN078_002771"
     CDS             complement(92..388)
                     /locus_tag="JN078_002771"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041918.1"
                     /translation="MRFLLANTFCKIVKQFSFIDRIRIYSLHPCLNKHLSIQSNRDWL
                     SMSIFSDYSFSIEMHNNLTIDYYLALSSTKGSGITNIISIILQQAQDYDVAKIT"
     gene            672..2303
                     /gene="oppA"
                     /locus_tag="JN078_002772"
     CDS             672..2303
                     /gene="oppA"
                     /locus_tag="JN078_002772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707150.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein OppA"
                     /protein_id="HAY9041919.1"
                     /translation="MTNITKRSLVAAGVLAALMAGNVALAADVPAGVTLAEKQTLVRN
                     NGSEVQSLDPHKIEGVPESNISRDLFEGLLVSDLDGHPAPGVAESWDNKDAKVWTFHL
                     RKDAKWSDGTPVTAQDFVYSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKPITDL
                     GVKAIDDHTLEVTLSEPVPYFYKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYT
                     LKDWVVNERIVLERSPTYWNNAKTVINQVTYLPIASEVTDVNRYRSGEIDMTYNNMPI
                     ELFQKLKKEIPDEVHVDPYLCTYYYEINNQKPPFNDVRVRTALKLGMDRDIIVNKVKA
                     QGDMPAYGYTPPYTDGAKLTQPEWFGWSQEKRNEEAKKLLAEAGYTADKPLTINLLYN
                     TSDLHKKLAIAASSLWKKNIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADYNEPT
                     SFLNTMLSNSSMNTAHYKSPAFDSIMAETLKVTDEAQRTALYTKAEQQLDKDSAIVPV
                     YYYVNARLVKPWVGGYTGKDPLDNTYTRNMYIVKH"
     gene            2389..3309
                     /gene="oppB"
                     /locus_tag="JN078_002773"
     CDS             2389..3309
                     /gene="oppB"
                     /locus_tag="JN078_002773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppB"
                     /protein_id="HAY9041920.1"
                     /translation="MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPE
                     VMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGA
                     AAFFLAVILGVSAGVIAALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHW
                     LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRR
                     IILRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVL
                     SLTILVGALTILFNAIVDVLYAVIDPKIRY"
     gene            3324..4232
                     /gene="oppC"
                     /locus_tag="JN078_002774"
     CDS             3324..4232
                     /gene="oppC"
                     /locus_tag="JN078_002774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000979653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppC"
                     /protein_id="HAY9041921.1"
                     /translation="MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFIHNRAAVASLM
                     VLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMESGHYFGTDSSGRDLLVRVAIGGR
                     ISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF
                     GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNV
                     LGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPA
                     GFLVVTLFCFNFIGDGLRDALDPKDR"
     gene            4244..5257
                     /gene="oppD"
                     /locus_tag="JN078_002775"
     CDS             4244..5257
                     /gene="oppD"
                     /locus_tag="JN078_002775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppD"
                     /protein_id="HAY9041922.1"
                     /translation="MSVIETATVPLAQQQADALLNVKDLRVTFSTPDGDVTAVNDLNF
                     SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEHELNKLR
                     AEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKNMSKAEAFEESVRMLDAVKMPEARK
                     RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREF
                     NTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPVHPYSIGLLNAVPRLD
                     AEGETMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICSSAPPLEEFTLGRLCACFKPVE
                     ELL"
     gene            5254..6258
                     /gene="oppF"
                     /locus_tag="JN078_002776"
     CDS             5254..6258
                     /gene="oppF"
                     /locus_tag="JN078_002776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppF"
                     /protein_id="HAY9041923.1"
                     /translation="MNAVTEGRKVLLEIADLKVHFEIKDGKQWFWQPPKTLKAVDGVT
                     LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGHVAWLGKELLGIKPDEWRAVRSD
                     IQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKMSRQEVRERVKAMMLKVGLLPNLINR
                     YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSL
                     IFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTRALMSAVPIPDPDLE
                     KNKTIQLLEGELPSPINPPSGCVFRTRCPIAGPECAKTRPVLEGSFRHAVSCLKVDPL
                     "
     gene            complement(6311..6640)
                     /locus_tag="JN078_002777"
     CDS             complement(6311..6640)
                     /locus_tag="JN078_002777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309775.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciU family protein"
                     /protein_id="HAY9041924.1"
                     /translation="MDMDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEE
                     RGGAELFDPVEDWQEHVDFDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKL
                     CHIIWRE"
     gene            complement(6675..8135)
                     /gene="cls"
                     /locus_tag="JN078_002778"
     CDS             complement(6675..8135)
                     /gene="cls"
                     /locus_tag="JN078_002778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HAY9041925.1"
                     /translation="MTTVYTLVSWLAILGYWLLIAGVTLRILMKRRAVPSAMAWLLII
                     YILPLVGIIAYLAVGELHLGKRRAERARAMWPSTAKWLNDLKACKHIFAEENSSVAAP
                     LFKLCERRQGIAGVKGNQLQLMTESDDVMQALIRDIQLARHNIEIVFYIWQPGGMADQ
                     VAESLMAAARRGIHCRLMLDSAGSVAFFRSPWPELMRNAGIEVVEALKVNLMRVFLRR
                     MDLRQHRKMIMIDNYIAYTGSMNMVDPRYFKQDAGVGQWIDLMARMEGPIATAMGIIY
                     SCDWEIETGKRILPPPPDVNIMPFEQASGHTIHTIASGPGFPEDLIHQALLTAAYSAR
                     EYLIMTTPYFVPSDDLLHAICTAAQRGVDVSIILPRKNDSMLVGWASRAFFTELLAAG
                     VKIYQFEGGLLHTKSVLVDGELSLVGTVNLDMRSLWLNFEITLAIDDKGFGADLAAVQ
                     DDYISRSRLLDARLWLKRPLWQRVAERLFYFFSPLL"
     gene            8278..8451
                     /locus_tag="JN078_002779"
     CDS             8278..8451
                     /locus_tag="JN078_002779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciY family protein"
                     /protein_id="HAY9041926.1"
                     /translation="MKRSRTEVGRWRMQRQASRRKSRWLEGQSRRNMRIHSIRKCILN
                     KQRNSLLFAIYNI"
     gene            complement(8506..9759)
                     /gene="kch"
                     /locus_tag="JN078_002780"
     CDS             complement(8506..9759)
                     /gene="kch"
                     /locus_tag="JN078_002780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="voltage-gated potassium channel protein"
                     /protein_id="HAY9041927.1"
                     /translation="MSHWATFKQTATNLWVTLRHDILALAVFLNGLLIFKTIYGMSVN
                     LLDIFHIKAFSELDLSLLANAPLFMLGVFLVLNSIGLLFRAKLAWAISIILLLIALIY
                     TLHFYPWLKFSIGFCIFTLVFLLILRKDFSHSSAAAGTIFAFISFTTLLFYSTYGALY
                     LSEGFNPRIESLMTAFYFSIETMSTVGYGDIVPVSESARLFTISVIISGITVFATSMT
                     SIFGPLIRGGFNKLVKGNNHTMHRKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP
                     EDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCLAILALSDNDADNAFVVLSAKD
                     MSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLNGEEINNDMLVSMLL
                     NSGHGIFSDNDEQETKADSKESAQK"
     gene            complement(10059..10355)
                     /locus_tag="JN078_002781"
     CDS             complement(10059..10355)
                     /locus_tag="JN078_002781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009448315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HAY9041928.1"
                     /translation="MLYVIYAQDKADSLEKRLSVRPAHLARLQLLHDEGRLLTAGPMP
                     AVDSNDPGAAGFTGSTVIAEFESLEAAQAWADADPYVAAGVYEHVSVKPFKKVF"
     gene            10570..11298
                     /gene="tonB"
                     /locus_tag="JN078_002782"
     CDS             10570..11298
                     /gene="tonB"
                     /locus_tag="JN078_002782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707161.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein TonB"
                     /protein_id="HAY9041929.1"
                     /translation="MTSMTLDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAP
                     AQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK
                     PKPVKKVQEQPKRDVKPVESRPASPFENTALARLTSSTATAATSKPVTSVASGPRALS
                     RNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRY
                     EPGKPGSGIVVNILFKINGTTEIQ"
     gene            complement(11338..11736)
                     /gene="yciA"
                     /locus_tag="JN078_002783"
     CDS             complement(11338..11736)
                     /gene="yciA"
                     /locus_tag="JN078_002783"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HAY9041930.1"
                     /translation="MSTTHNVPQGDLVLRTLAMPADTNANGDIFGGWLMSQMDIGGAI
                     LAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVQKGTTSVSINIEVWVKKVASE
                     PIGQRYKATEALFKYVAVDPEGKPRALPVE"
     gene            complement(11841..12380)
                     /locus_tag="JN078_002784"
     CDS             complement(11841..12380)
                     /locus_tag="JN078_002784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HAY9041931.1"
                     /translation="MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRF
                     RKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQ
                     RMLGKELTLPQPVWSKLNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLI
                     FTLLSGIYIYRHMPQEDKS"
     gene            complement(12410..13153)
                     /locus_tag="JN078_002785"
     CDS             complement(12410..13153)
                     /locus_tag="JN078_002785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0259 family protein"
                     /protein_id="HAY9041932.1"
                     /translation="MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPS
                     DAQLAQLNDGVPVSGSSGLFDLVQNMSPEQQQILLQASAASTFSGLIGNAILAGGVIL
                     IIQLVSAGQRVSALRAIGASAPILPKLFILIFLTTLLVQIGIMLVVVPGIIMAILLAL
                     APVMLVQDKMGIFASMRSSMRLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEI
                     GAVLANTLSNLISAVLLIYLFRLYMLIRQ"
     gene            complement(13181..13270)
                     /locus_tag="JN078_002786"
                     /pseudo
     CDS             complement(13181..13270)
                     /locus_tag="JN078_002786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460692.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
     gene            13510..14148
                     /gene="ompW"
                     /locus_tag="JN078_002787"
     CDS             13510..14148
                     /gene="ompW"
                     /locus_tag="JN078_002787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein OmpW"
                     /protein_id="HAY9041933.1"
                     /translation="MKKLTVAALAVTTLLSGSAFAHEAGEFFMRAGSATVRPTEGAGG
                     TLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPP
                     TLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVG
                     VDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF"
BASE COUNT         3826 a         3317 c         3474 g         3581 t
ORIGIN      
        1 cgcagttatc aaaagcaaaa ggaataggta aaaatattct tctcaaatta cagttagtta
       61 taaggatttt cttaactgct tctcctcacc atcatgttat tttcgccaca tcataatcct
      121 gggcttgctg aagaataatt gaaatgatat tagtaattcc actgcctttg gtagaggaaa
      181 gtgctaaata ataatcaatt gttaaattat tgtgcatttc aatactgaaa ctgtaatcag
      241 aaaagataga catgcttagc caatctctat ttgattgaat tgaaagatgt ttgttaaggc
      301 atggatgcaa gctatagatt ctgatacggt caataaaaga gaattgctta acaattttgc
      361 aaaatgtatt ggcgagtaag aaccgcattt agtactttcc gggcaaccgc cagacgattc
      421 tttattggta atgagaataa ttaacaatta aagagcgtcg cgaaagaata atgtgtctcg
      481 acaggggaga cacagtacga atcgacataa ggtgatcgtc tgaatcacca gaataaataa
      541 agtcggtgat agcaatccgt aacgataaag taacctgaca gcagaaagtc tccgagcctg
      601 tgcagggtcc caatccggga ttacacatgc tggttaatac cagtaattat aatgagggag
      661 tccaaaaaac aatgaccaac atcaccaaga gaagtttagt agcagctggc gttctggctg
      721 cgctaatggc agggaatgtc gcgctggcag ctgatgtacc cgcaggcgtc acactggcgg
      781 aaaaacaaac gctggtacgt aacaatggtt cagaagttca gtcattagat ccgcacaaaa
      841 ttgaaggtgt tccggagtct aatatcagcc gagacctgtt tgaaggctta ctggtcagcg
      901 atcttgacgg tcatccggca cctggcgtcg ctgaatcctg ggataataaa gacgcgaaag
      961 tctggacctt ccatttgcgt aaagatgcga aatggtctga tggtacgcca gtcacagcac
     1021 aagactttgt gtatagctgg caacgttctg ttgatccgaa cactgcttct ccgtatgcca
     1081 gttatctgca atatgggcat atcgccggta ttgatgaaat tcttgaaggg aaaaaaccga
     1141 ttaccgatct cggtgtgaaa gctattgatg atcacacatt agaagtcacc ttaagtgaac
     1201 ccgttccgta cttctataaa ttacttgttc acccatcaac ttcaccggtg ccaaaagccg
     1261 ctatcgagaa attcggcgaa aaatggaccc agcctggtaa tatcgtcacc aacggtgcct
     1321 ataccttaaa agattgggtc gtaaacgaac gaatcgttct tgaacgcagc ccgacctact
     1381 ggaacaacgc gaaaaccgtt attaaccagg taacctattt gcctattgct tctgaagtta
     1441 ccgatgtcaa ccgctaccgt agtggtgaaa tcgacatgac ttataacaac atgccgatcg
     1501 aattgttcca gaagctgaaa aaagagatcc cggacgaagt tcacgttgat ccatacctgt
     1561 gcacttacta ttacgaaatt aacaaccaga aaccgccatt caacgatgtg cgtgtgcgta
     1621 ccgcactgaa actaggtatg gaccgcgata tcattgttaa taaagtgaaa gcgcagggcg
     1681 acatgcccgc ctatggttac actccaccgt atactgatgg cgcaaaattg actcagccgg
     1741 aatggtttgg ctggagccag gaaaaacgta acgaagaagc gaaaaaactg ctggctgaag
     1801 ctggttatac cgcagacaaa ccgttgacaa tcaacctgtt gtataacacc tccgatctgc
     1861 ataaaaagct ggcgattgct gcctcttcat tgtggaagaa aaacattggt gtaaacgtca
     1921 aactggttaa ccaggagtgg aaaacgttcc tcgacacccg tcaccagggt acttttgatg
     1981 tggcccgtgc aggctggtgt gctgactaca acgaaccaac ttccttcctg aacaccatgc
     2041 tttcgaacag ctcgatgaat accgcgcatt ataagagccc ggcctttgac agcattatgg
     2101 cggaaacgct gaaagtgact gacgaggcgc agcgcacagc tctgtacact aaagcagaac
     2161 aacagctgga taaggattcg gccattgttc ctgtttatta ctacgtgaat gcgcgtctgg
     2221 tgaaaccgtg ggttggtggc tataccggca aagatccgct ggataatacc tatacccgga
     2281 atatgtacat tgtgaagcac taatggcaat acgtggggca ggagtgtcct gctccacggt
     2341 gtctgatttt tatcgcatta cagaaggcac aggccagaag gtagggcaat gttaaaattt
     2401 attctacgtc gctgtctgga agcgattccg acgctattta ttcttattac tatttcgttc
     2461 tttatgatgc gcctcgcgcc gggaagccct tttaccggcg aacgtacttt accgccagaa
     2521 gtgatggcca atatcgaagc gaaatatcat cttaatgatc cgatcatgac acagtatttc
     2581 agctacctga aacaactggc gcacggtgat ttcggtccat cgtttaaata taaagattat
     2641 tcggtcaatg acttggttgc atccagtttt cccgtttctg ccaaactggg agccgcagca
     2701 tttttccttg cggtaatact gggtgttagt gctggcgtta ttgccgcatt aaaacaaaac
     2761 accaaatggg actataccgt gatggggctg gcaatgaccg gggttgttat ccccagtttt
     2821 gtggttgcac cattattagt catgatattt gcgatcattt tgcattggct gccgggcggt
     2881 ggctggaatg gtggggcgct taaattcatg atattgccga tggtggcgtt gtcactcgct
     2941 tatatcgcca gtattgcgcg tattacccgt ggctctatga ttgaagtatt acactccaat
     3001 tttattcgta ctgcccgggc gaaagggtta cctatgcggc ggatcatttt acgtcacgca
     3061 ttaaaacctg ctctgttacc cgtgctctct tatatgggcc ccgcatttgt cggcattatt
     3121 accggttcta tggttatcga aaccatttat ggtttgccgg ggattggaca actgttcgtt
     3181 aatggcgcat tgaaccgtga ctattcctta gtgttaagcc tgaccatcct ggttggtgct
     3241 ttaaccattt tgtttaatgc cattgtcgat gtgctatatg cggttatcga cccgaaaatc
     3301 cgttactgat actggagctc gcgatgatgt taagtaagaa aaacagcgag acgctggaaa
     3361 atttcagtga aaagctggag gtcgaagggc gcagcttgtg gcaggacgca cgtcgacgtt
     3421 ttattcataa ccgtgcggcg gttgccagtc tgatggtgct ggtgctgatc gcgttatttg
     3481 taatcctggc accgatgctt tcccagtttg cctatgacga tactgactgg gcgatgatgt
     3541 ccagcgcccc ggatatggag tccggtcact actttggtac tgactcatcc ggtcgcgacc
     3601 tgcttgtgcg cgttgcgatt ggtgggcgta tctcactcat ggtcggtgtt gctgcggcac
     3661 tggtggctgt ggtcgtcggg acactttatg gttcgctttc cggttatctg ggcggtaaag
     3721 tggattcggt aatgatgcgt ctgctggaaa tcctcaactc cttcccattc atgttcttcg
     3781 tcattttgct ggtgaccttt ttcggtcaaa acatcctgct gattttcgtg gcgataggca
     3841 tggtttcctg gctggatatg gctcgtattg tgcgtgggca aaccctgagt ctgaagcgca
     3901 aagagtttat tgaggcggca caagttggcg gtgtatcgac atcgggcatt gttattcgcc
     3961 acattgtgcc gaatgtactc ggtgtggtgg tggtctacgc atcacttctg gtgcccagca
     4021 tgatcctctt tgaatctttc cttagcttcc tggggttggg tacgcaagag ccgttaagca
     4081 gctggggtgc attgctgagt gatggcgcga actcgatgga agtctctcca tggttattgt
     4141 tgttcccagc gggattcctc gtggtgacgc tgttttgttt caactttatc ggcgatggct
     4201 tgcgtgatgc cctcgacccg aaagatcgtt aaggagtgca gccatgagcg taattgaaac
     4261 tgcaactgtg ccgctcgcac aacaacaggc tgacgcactg ctgaacgtga aagatttgcg
     4321 tgtcaccttt agtaccccgg acggcgacgt cacggcggtc aatgatttga atttttccct
     4381 acgtgccgga gaaacgctgg gtattgtagg tgagtctggt tcgggtaaat cgcaaactgc
     4441 atttgcgttg atgggcctgt tggctgccaa cggacgtatt ggcggatcgg caaccttcaa
     4501 tgggcgtgaa atcctcaatt tgccagagca tgaactcaat aaactgcgcg ctgaacaaat
     4561 ctcaatgatt tttcaggacc caatgacttc gttgaatccc tatatgcgtg tcggtgagca
     4621 gttgatggaa gtgctgatgc tgcataagaa catgagcaaa gctgaggcgt ttgaagagtc
     4681 ggtgcggatg ctcgatgcgg taaaaatgcc ggaagcacgt aaacgcatga aaatgtaccc
     4741 gcacgagttt tctggcggca tgcgtcagcg agttatgatt gcgatggcat tgctatgtcg
     4801 acctaagctg ctgattgcgg atgaacccac tacagcgctg gacgtcaccg tacaggcgca
     4861 gatcatgacg ctattaaatg aactgaaacg ggaatttaat accgccatca ttatgattac
     4921 ccacgatctt ggcgtggtgg cggggatctg tgacaaagtg ctggtaatgt acgccgggcg
     4981 cacgatggaa tatggcaacg cgcgcgatgt cttttatcaa cccgttcatc cttattctat
     5041 cggtttgctc aacgcggtgc cgcgtctcga tgcggaaggt gaaacaatgt tgaccatccc
     5101 gggtaatccg ccaaacctgc tgcgattacc gaaaggttgc ccgttccagc cacgttgtcc
     5161 gcatgcgatg gaaatttgta gtagcgcacc gccgctggaa gagtttacgc ttggccgtct
     5221 gtgtgcttgc tttaaaccgg tggaggaact gttatgaatg ctgtaaccga aggaagaaaa
     5281 gtcctccttg aaatcgccga tctgaaagtg cactttgaaa tcaaagatgg caaacagtgg
     5341 ttctggcaac cgccgaaaac gctcaaagcc gtcgatggtg tcacgcttcg cctgtatgaa
     5401 ggggaaacat taggtgtggt aggggaatcg ggatgcggta agtccacctt tgctcgcgcc
     5461 atcattggcc tggttaaagc gaccgacggt catgttgcct ggttaggtaa agagttgctg
     5521 ggcattaagc ccgatgaatg gcgtgccgtt cgcagtgata ttcagatgat tttccaggat
     5581 ccgttggcat cgctaaaccc gcgcatgacc atcggcgaga tcatcgctga accactgcgt
     5641 acttatcatc cgaaaatgtc acgtcaggaa gttcgcgagc gcgtgaaggc gatgatgctg
     5701 aaagtcgggt tattgcctaa cctgattaac cgctatccgc atgagttctc cggtgggcag
     5761 tgccagcgta tcgggattgc tcgtgctctt attcttgaac cgaagctgat tatctgtgat
     5821 gagccggtgt cggcgctgga cgtgtcaatt caggcgcagg tggtcaacct gctccagcag
     5881 ctgcaacgtg agatgggatt gtcattaatt tttattgctc atgacctggc cgtggtaaaa
     5941 cacatttccg atcgtgtgtt ggtgatgtat ctcggccatg cggtagaact ggggacctat
     6001 gatgaggtct accacaatcc actacatcct tacaccaggg cattgatgtc ggcagtcccc
     6061 atacctgatc cggatctgga gaagaacaaa accatccagt tactggaagg ggaattaccg
     6121 tcgccgatca acccgccttc cggttgtgtt ttccgtaccc gttgcccgat tgccggtccg
     6181 gagtgcgcca aaacacgtcc tgtgctggaa gggagtttca gacacgccgt ttcttgcctg
     6241 aaagtcgatc cgctttaaac acaataaggg ctgacagttg tcagcccttt ttcacgccga
     6301 aagcgattat ttattcccgc cagatgatat ggcaaagttt gtgatctttt tcgcggcata
     6361 acagaatgcg ggcgaaaaca tcgttgattt caccatcctc actgtccgcc agaccaatca
     6421 ccacttcggc aaaaaagtcc gggttcaaat cgaaatcaac atgttcctgc cagtcttcca
     6481 ccggatcgaa taactccgcg ccgccgcgct cttcaaactg aagattgaac agcagaacat
     6541 cagctgggtc gagattgtcg gcagccagtt cgagaaaaat atcgtaggcc tgctcaagcg
     6601 tttcatcttc agtcaggcga ttgtttagat ccatatccat agtcactacc tgtttaacct
     6661 ctgttggaga cgttttacag caacgggctg aagaagtaaa acagtcgctc ggcgacacgt
     6721 tgccataatg gacgttttag ccataaacgg gcatcgagca gacgtgaacg cgaaatataa
     6781 tcgtcctgaa cggcggcaag gtctgcacca aaacctttat cgtcgattgc cagggtaatc
     6841 tcgaaattca gccacagact acgcatatca aggttaacgg tgccaaccag acttagttcg
     6901 ccatcgacca gcacgctctt ggtatgcagt aacccgcctt caaactgata aattttaacc
     6961 ccagcagcaa gaagttccgt aaagaatgcg cgactggccc agccgaccag catcgagtca
     7021 ttttttcgcg gaaggataat actgacatcc accccgcgct gtgccgccgt gcaaatcgca
     7081 tgaagtaaat catcgcttgg cacaaagtag ggcgtggtca tgatcaaata ttcacgcgcc
     7141 gaataagccg cagtcaataa tgcctggtga atgagatctt ccggaaagcc ggggccagaa
     7201 gcaattgtgt gaatggtgtg accgctggcc tgttcaaacg gcataatatt gacatctggt
     7261 ggtggcggca gaatacgttt tccggtttca atctcccagt cgcaggaata aataatcccc
     7321 atcgcggtgg cgatggggcc ttccatacgc gccatcagat caatccattg ccctacgccc
     7381 gcatcttgtt tgaagtagcg aggatcgacc atattcatgc tgccggtgta cgcgatgtaa
     7441 ttatcgatca tgatcatctt gcgatgttgg cgcaggtcca tacggcgtaa aaacacacgc
     7501 atcagattga cctttaaggc ttcgaccact tcaataccgg cattacgcat tagctcgggc
     7561 cacgggctgc ggaaaaaagc cacactcccg gcggagtcga gcatcaatcg gcaatgaatg
     7621 ccgcgtcgcg cagcggccat taatgattca gccacctggt ccgccatgcc gccgggctgc
     7681 cagatataaa acacaatctc aatattatgg cgcgcgagct ggatgtcgcg gattaacgcc
     7741 tgcatcacat catctgactc ggtcatcagt tgtagctgat tccctttgac cccagcgatc
     7801 ccctgacgac gctcgcaaag cttgaataat ggcgcagcga cactgctatt ttcttcggcg
     7861 aagatatgct tacaggcttt aaggtcgtta agccattttg cggtggaagg ccacatcgct
     7921 ctggcgcgct cagcgcggcg tttgcctaaa tggagctcgc caacggcaag ataggcaata
     7981 attccgacta acggcagaat gtaaataatc aacagccagg ccatcgcgga gggaactgcg
     8041 cgtcgtttca ttagaatgcg taaagttacg cctgcaatga gcaaccagta tcccagaatg
     8101 gccaaccaac tcaccaacgt ataaacggtt gtcatagatt agaaatcctt ttgaaagcgc
     8161 attgttatga gtttacgcat atggattcat ctggcaaata aaaacgcggg aaaagcactg
     8221 gtcagcgtcg ggggcggggg tataatgacc attctgttat tgcatagagt agttaacatg
     8281 aagcggagta gaacggaagt ggggcgctgg cgcatgcagc gtcaggctag ccgacgtaaa
     8341 tcgcgttggc ttgaggggca atcgcgccga aatatgcgta tccacagcat caggaagtgc
     8401 attctaaaca aacagcgtaa ctcgttattg tttgcgatct acaatatcta aatgtactgg
     8461 gcaccattgc ggtgcccaat aagtttactc ctccatcttt aaactctatt tttgcgccga
     8521 ttctttactg tcagctttcg tttcttgttc atcgttatcg ctgaaaatgc catgaccgga
     8581 gttcaacaac attgaaacga gcatatcatt attaatctct tcaccattta aaactcgcgc
     8641 cagaatttcg ctgccaaaca gttgcggtga gagaatgata tccggatgta ccatcttaat
     8701 cttattcagg tttttgctat cactgacggc gagaactgtt ttgacatcac tgctcatatc
     8761 ttttgccgag agtacaacaa acgcgttatc tgcatcgtta tcactcagcg ccagaatggc
     8821 caggcaacga tcgattcccg ctttctttaa tactgaactg tcattactgt caccggggat
     8881 aacatcagcg ttatcgccta agcgttgctc aagttgcttg atatcatctt caggcaagtt
     8941 gctgataacc gttacgtttt gtccgcgttg attcagttgc agaatcgtat tgatggcgag
     9001 aatcgaatgt ccgcaaacaa taaaatgatc tttacgatgc attgtatgat tgtttccttt
     9061 tacaagtttg ttgaatcccc cgcggataag cggaccaaaa attgaggtca tagatgtggc
     9121 aaaaacggta ataccggaaa taatgaccga aatagtgaac aatcgtgctg attcagaaac
     9181 agggacaata tcgccatagc cgacggttga catggtttct atcgaaaaat agaacgcggt
     9241 catcaaactt tctattcgcg gattaaaacc ttcgcttaaa taaagcgcac cgtaggttga
     9301 gtaaaacagt aatgtcgtga aactaataaa tgcaaaaatt gtcccggctg cggcgctact
     9361 gtgggagaag tctttgcgca gtatcagcaa aaacaccagc gtaaaaatgc aaaatccaat
     9421 actaaatttc aaccagggat aaaaatgcag ggtataaatt agcgctatca acaacaaaat
     9481 gatactgatt gcccatgcga gctttgcccg gaacagtaag ccaatggagt tcaggacaag
     9541 aaagacgccg agcataaata gtggggcgtt tgccagcaag gagagatcca actctgaaaa
     9601 tgctttgata tggaaaatat ctagcaaatt gaccgacata ccatagattg ttttaaaaat
     9661 aagcaatcca tttaaaaaga cggccagcgc gagaatgtcg tgccgtaggg tcacccataa
     9721 atttgttgct gtttgtttga atgtagccca gtgactcact gatacctctg taaccacaat
     9781 tttgtttaat tatcttagcg tgcacatttt ctgaacatac atgcagcgcg tgaatgtgtt
     9841 aaacaatagt agatgacttt atccgcagta atcaaaggtt ttgagcgagc aactgtacct
     9901 caggaaaggt catttttcct gaatatgctc acatcatata aagaaataca gataaagtta
     9961 ttatctgctt gtggtggtga atgcactgac cggctataag gaaaggccaa acaagaacac
    10021 ggttgcaaaa accgtgccct taaatattga atctctattc agaacacttt cttaaatggt
    10081 ttcactgaaa cgtgttcata gactcctgcc gctacgtacg ggtcagcatc ggcccaggcc
    10141 tgagctgctt ccagcgattc aaattcagca ataacggttg agccagtaaa tcccgcagcc
    10201 cctggatcgt tactgtctac cgctggcatt ggaccagctg tcaacaaacg accttcatca
    10261 tgcagtaact gtaaacgtgc taaatgtgcc ggacgaacgg aaaggcgttt ttcgaggcta
    10321 tcagctttgt cttgagcgta aataacatac aacacgggca caactccttg ttcgggaaag
    10381 ttgtaaagta cgttatttga aagggcgaag atctgcaacg gaaagatgat gtctttgtta
    10441 agaccatgca taaagtaagg ttaattacgg caaaaatgac attttcactg atcctgatcg
    10501 tcttgcctta ttgaatatga ttgctatttg catttaaaat cgaggcttgg tttttctact
    10561 gaaatgatta tgacttcaat gacccttgat ttacctcgcc gcttcccctg gccgacgtta
    10621 ctttcggtct gcattcatgg tgctgttgtg gcgggtctgc tctatacctc ggtacatcag
    10681 gttattgaac tacctgcgcc tgcgcagcca atttctgtca cgatggttgc gcctgctgat
    10741 ctcgaaccgc cacaagccgt tcagccgcca ccggagccgg tggtagagcc agaaccggaa
    10801 cctgagccga tccccgaacc gccaaaagaa gcaccggtgg tcattgaaaa gccgaagccg
    10861 aaacctaagc caaaaccgaa gccggtgaaa aaggtacagg agcagccaaa acgcgatgtc
    10921 aaacccgtag agtcgcgtcc ggcatcaccg tttgaaaata cggcactggc acgcctgaca
    10981 tcaagtacag caacggctgc aaccagcaag ccggttacca gtgtggcttc aggaccacgc
    11041 gcattaagcc gtaatcagcc gcagtatccg gcacgagcac aggcattgcg cattgaaggg
    11101 caggttaaag ttaaatttga cgtcacgccg gatggtcgcg tggataacgt acaaatcctc
    11161 tcagccaagc ctgcgaacat gtttgagcgt gaggtgaaaa atgcgatgcg cagatggcgt
    11221 tatgagccgg gtaagccagg cagtgggatt gtggtgaata tcctgtttaa aattaacggc
    11281 accaccgaaa ttcagtaagc agaaagtcaa aagcctccga ccggaggctt ttgactatta
    11341 ctcaacaggt aaggcgcgag gttttccttc aggatcaacc gcgacatact taaataatgc
    11401 ttctgtcgct ttatagcgtt gcccgattgg ttcagacgct acttttttca cccacacttc
    11461 aatattaatg ctgaccgatg tcgtcccttt ctggacacag cgtgcatagc agcacactac
    11521 atcgccgacc gcaaccggcc gtaagaaagt cattccttca acccgcacgg tcactacgcg
    11581 accgtgggca atttctttcg ccagaatagc gccgccaata tccatttgtg acattaacca
    11641 accaccaaag atgtcaccat tggcattggt atcggcgggc atggctaaag tacgtaaaac
    11701 aagatcgccc tgagggacgt tatgtgttgt agacatggta aaaccgactt aaaaggaaaa
    11761 tcacaggcgc gatgctacta tgattttcct gaggagaaca gaggagatac agcgccagcc
    11821 ccgaaggact ggcagtctgg ttaggattta tcttcctgcg gcatgtggcg gtagatatag
    11881 ataccgctta acaatgtgaa gattaaggta agggcggtca gtccaaagac tttaaagttg
    11941 acccaaatat tttgcggcag ccagaatgcg atgtagatgt ttgccagacc gcaaaggata
    12001 aagaaaacag cccaggccag attcagcttc gaccataccg gttgcggcag cgtgagttct
    12061 ttacccagca tccgctgaat tagcggcttt ttcatcaccc attggctgac taacagggct
    12121 cccgcaaaca gagcataaat gactgtaacc ttccatttaa taaactcatc attgtggaag
    12181 aacagcgtca agccaccgaa gacgaccacc agaacaaaag tgatcagggc catcttctca
    12241 accttacgaa agcgaaccca gctatagata agcacaatcg ccgtggcgac gatcagcgcc
    12301 gcagtagccg catagatgtc ataaatcttg taaaacgcga aaaagacaac cagcggtaaa
    12361 aaatcaagaa actgcttcat tttacgattc cgtaatcaaa tgcttaaggt tattggcgaa
    12421 tcaacatata cagacggaac agatagatga gcaatacggc tgaaatcagg ttgctcaagg
    12481 tgttcgccag tacggcacca atttccgggg ttaatgcggc aaaagaagag gcaaaaagca
    12541 gcaacagtgt ttttgccagc aaccagctca gtactgcggg tgccaccaga cgcatattcg
    12601 cccaagtcag ccgcatactg ctacgcatcg aggcaaaaat gcccattttg tcctgtacca
    12661 gcatcaccgg tgccagggcc agtaaaatgg ccatgataat tcccggaacg accactagca
    12721 tgatgccaat ctgtactaaa agggtagtca gaaaaatcag aataaataac tttggcaata
    12781 tcggtgcact ggcaccaata gctcgcagcg cactgactct ctgacccgca gacaccagct
    12841 ggataattaa tattacgcct ccggcgagaa tggcgttacc gattaatcct gaaaaagtgg
    12901 acgccgctga agcctgcagc aaaatttgtt gctgttccgg tgacatattc tgaaccaggt
    12961 cgaacaaccc actactgccg ctaacgggca cgccgtcatt gagctgcgca agctgtgcat
    13021 cactgggtga gaaaacatgc cctaacacca ctgtgataaa cgcacatagc aacgatacca
    13081 acagaatggt cataaattga ttacggaaga aatttccggt gtcacggtat acggactgcg
    13141 ccgtgataga catgcactct ccttgagttt tatgcaggtg ttaattagcg ggcaattgta
    13201 ccctggttaa gcctcgggtg gcagcatcag gtcttgtatg gaaaagcata tctttgtaaa
    13261 gcggaggtaa ttgctggcct tcaggcgtgg gcaaaccgcg gcaagtggcg atcgagttaa
    13321 tatttgcgta gcgaaaatat ttaaaaattg atttaaatca cgttaaccag gattctcaat
    13381 gcaacttcta aattaatcca gatcaataaa gggtgaatta tcatatgtaa tgtgatctat
    13441 gtaggatcat ttgttactcc aatgtaggta tattcgtcac gtttttataa ccataacgac
    13501 ggagcggata tgaaaaagtt aacagtggcg gctttggcag taacaactct tctctctggc
    13561 agtgcctttg cgcatgaagc aggcgaattt tttatgcgtg caggttctgc aaccgtacgt
    13621 ccaacagaag gtgctggtgg tacgttagga agtctgggtg gattcagcgt gaccaataac
    13681 actcaactgg gcttgacgtt tacttatatg gcgaccgaca acattggtgt ggaattactg
    13741 gcagcgacgc cgttccgcca taaaatcggc acccgggcga ccggcgatat tgcaaccgtt
    13801 caccatctgc cgccaacact gatggcgcag tggtattttg gtgatgccag cagcaaattc
    13861 cgtccttacg ttggggcagg tattaactac accaccttct ttgataatgg atttaacgat
    13921 catggcaaag aggcagggct ttccgatctc agtctgaaag attcctgggg agctgccggg
    13981 caggtggggg ttgattatct gattaaccgt gactggttgg ttaacatgtc agtctggtac
    14041 atggatatcg ataccaccgc caattataag ctgggcggtg cacagcaaca tgatagcgta
    14101 cgcctcgatc cgtgggtgtt tatgttctca gcaggatatc gtttttaatt ccgcacaaaa
    14161 acgaccccgt aatatacggg gtcaataagg acatggca
//
LOCUS       DADMJB010000107        13849 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.107, whole genome shotgun sequence.
ACCESSION   DADMJB010000107 DADMJB010000000
VERSION     DADMJB010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13849)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13849)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13849
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.107"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..565)
                     /locus_tag="JN078_002788"
     CDS             complement(<1..565)
                     /locus_tag="JN078_002788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000108506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9041934.1"
                     /translation="MSTTTRKFKTIITDTGAKKLAQVAAPDGKPVRLTHMAVGDGGGT
                     LPTPDSKQTRLVHEVWRHTVNRVILDATHQNRIIAELVIPPETGGFWIREIGVFDEHG
                     DLIAVGNTAESYKPAVAEGSGRAQTFRTILTVSSTATVALTVDNTMVMATVDYVDDKL
                     KEHEQSRRHPDASLTAKGFVQLSSATNS"
     gene            complement(568..1098)
                     /locus_tag="JN078_002789"
     CDS             complement(568..1098)
                     /locus_tag="JN078_002789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000071700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HAY9041935.1"
                     /translation="MSNSLLPPSASNFMRCAEAVGTRITDIPVDLNTLWSPDTCPVHL
                     LPYLAWAFSVDRWDRNWPEETKRQVIRDAWLIHRHKGTISALRRAIEPLGYLIRVSEW
                     WEFGGEPGTFTVEVGTLDSGVTEEMYLEMERLIADARPVSRHMTGLNIIQEIPGDIFA
                     AAATYDGEVITIYPGD"
     gene            complement(1091..1987)
                     /locus_tag="JN078_002790"
     CDS             complement(1091..1987)
                     /locus_tag="JN078_002790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001297572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate assembly protein"
                     /protein_id="HAY9041936.1"
                     /translation="MPAVDLSQLPEPAIIAEPDFEAILADTKAMMIASYPAEQREAVS
                     AALELESEPLNVIAQTMSFREMLLRQRVNEGARACMLSHSAGTDLDNLAGNMNTKRLV
                     ITPATDTTDAVMESDTSLRLRAQRAYDGLSVAGPSGAYEYFARSASGLVRDARAISPS
                     PANVTVSILSTEGDGTATEALLNTVRAVLNAEDTRPVADRLTVQSARIVTWRLNAKLY
                     FYPGPESEPILAAAESSFRKWLAEQGLIGQDVALSAIAAALHVHGVQRVEIIEPTQNM
                     AISDIQAARCESFTISEGGRNE"
     gene            complement(1991..2341)
                     /locus_tag="JN078_002791"
     CDS             complement(1991..2341)
                     /locus_tag="JN078_002791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate assembly protein"
                     /protein_id="HAY9041937.1"
                     /translation="MTTRYTGMNPDGTGNLNDMEHLKQSVRDILTTPLASRVMRREYG
                     SLVPDLIDEPMNNTTRLQCMSAAVIALTRWEPRIALDAIDVVWKAGGRAGVTLSGTVM
                     QTMQNVELTITLRE"
     gene            complement(2338..2919)
                     /locus_tag="JN078_002792"
     CDS             complement(2338..2919)
                     /locus_tag="JN078_002792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001271907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HAY9041938.1"
                     /translation="MSAELMRLLSNIIRTGIISEVDEKSWRVRVRSGELETGWLRWNT
                     SRAGAFNVWLPPSPGEQVVIACIGGNPETAMIIGSLWSDAIPAPGKSLKEIVVSAPDG
                     AVFRYDADAGALSASGMKTATLQASVSVTLDTPVVECTDLLRTATLDVTKGGKMSGNI
                     THSGGNFTSNGITVHTHKHGGVKGGSDSTGGPQ"
     gene            complement(2916..3551)
                     /locus_tag="JN078_002793"
     CDS             complement(2916..3551)
                     /locus_tag="JN078_002793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000356302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HAY9041939.1"
                     /translation="MDKAFTRVDETFEAIRDSLNQQAINNIARKLAQDLRRAQQARIR
                     PQKAPDGTAWTPRRRHVTRIQERIRFIWNNEARTLKNWHHDTGKYGRTITGWDEDKNS
                     IRTFYRDDIDRFLEIRTRRINQDSTKRVPMFVKLRTARYLKARADASGVTVGYSGVAA
                     RIARVHQFGERDQVAPGIFTDYPVRELLGISQADERLIYNTVLGRIAEAVR"
     gene            complement(3544..4011)
                     /locus_tag="JN078_002794"
     CDS             complement(3544..4011)
                     /locus_tag="JN078_002794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000920596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9041940.1"
                     /translation="MLKTDSLREAMTRSCRWCQANPEKFTIFVESGNIETTGETPSFV
                     YRYQMVMFVMDYAGELDDLTLPLLAWLSENQPQLLLNPERNQDIKFSAVINDDDSADL
                     LFTLPLRERVRITRSSQGTPQAEHLLEPKPRLPSSEGDWSHVFQDVTWGESDG"
     gene            complement(4149..4556)
                     /locus_tag="JN078_002795"
     CDS             complement(4149..4556)
                     /locus_tag="JN078_002795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000780564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2570 domain-containing protein"
                     /protein_id="HAY9041941.1"
                     /translation="MKLWPTLGVAFLLTAGWGTSMRLSWSLGRENARNEAQASTLKST
                     ADTLNIISAGVQDMQQVLAQLRVENQQRNQDGEVRREQLRNDIAKDECAHALPDARFT
                     DRLRRHTERATASAVSPAYTADADHTGNASPLP"
     gene            complement(4553..4945)
                     /locus_tag="JN078_002796"
     CDS             complement(4553..4945)
                     /locus_tag="JN078_002796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000072320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HAY9041942.1"
                     /translation="MSNTFKFSSRSEKNLQGVNPDLVKVTRRALEISEVDFGITEGLR
                     SRYRQKQLVATGKSQTMNSRHLTGHAVDVVAYIGSQMSWEWPLYEKIAAAFRQASREL
                     NIPVEWGGDWKTLKDGPHFQLPHGAYPA"
     gene            complement(4942..5265)
                     /locus_tag="JN078_002797"
     CDS             complement(4942..5265)
                     /locus_tag="JN078_002797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000104349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HAY9041943.1"
                     /translation="MSTIQTGITEQVIAWLFDHLPTVYAVGAAVSISALMSLYDGRTL
                     VQTVTGSLACGVLAMAVAGSLRFFGFPEDAVTFIGASIGFMGAEKARDKVIAAFNRRV
                     KEKDE"
     gene            complement(5268..5468)
                     /locus_tag="JN078_002798"
     CDS             complement(5268..5468)
                     /locus_tag="JN078_002798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000864894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9041944.1"
                     /translation="MKVKALEGDTVDSLCFRYYGTTQGVTEKVLDANPGLCQQVFLDA
                     GQEVEMPEPEKKKREMIQLWGE"
     gene            complement(5468..5962)
                     /locus_tag="JN078_002799"
     CDS             complement(5468..5962)
                     /locus_tag="JN078_002799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000063104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head completion/stabilization protein"
                     /protein_id="HAY9041945.1"
                     /translation="MTIVARTEPGPAEDDITDTDDGDTRISAGAFWPDIVLRELRLAV
                     RLPGRVTTSRLLHTATGAVAHVTRELEAWQQEQQAAGHQTLADVPAPVINGESVNLWH
                     WRNAVYTATRALILERYRDADTTDKGDRRADALDIQTSDLWRDVSWAISDILCRPRIF
                     AELC"
     gene            complement(6130..6876)
                     /locus_tag="JN078_002800"
     CDS             complement(6130..6876)
                     /locus_tag="JN078_002800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004983471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase"
                     /protein_id="HAY9041946.1"
                     /translation="MITPAQQHWQNVMAQRAGRANEGVDHAARTAHEEVLYRLRLAQA
                     RLKGVQARSAKAAIKKELLPDFSGWIEGTLEADGGQQDEVIATLMVWAIDCGDLPLAL
                     RIGAYVVRHNLIMPDNFGRTAATVLTEEICNPVLTQAGTDADADLSAFIEPLDTLREI
                     VTDQDMPDEVRAKLCKACAFARRGLSDADSMALSLKLLREAMHLNPNAGVKREIATLS
                     RALKKADSAAEPEDASAQQAQDESSKKQQK"
     gene            complement(6922..7794)
                     /locus_tag="JN078_002801"
     CDS             complement(6922..7794)
                     /locus_tag="JN078_002801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005136493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P2 family phage major capsid protein"
                     /protein_id="HAY9041947.1"
                     /translation="MIGVTDQKGEKILLDTTGPIARTNTSYDGTKRRNPNNVVDLKNR
                     KYQCEQVNYDTFISYPQLDAWSAHPDFQSRISAQIARQVALDRIMIGFNGTSHADESN
                     FSTNKLLQDVNVGWLEHIRTDASERVMNDVTLTSRNMDNTVAHAGKYANADALVQDAR
                     SSLLDEWHKEADDLVVIMGRNLFNSLRLPVLNSISGQNPNAELLAGQLILSSRTIGGL
                     GVFLAPFFPDATMLITSFNNLSIYWQKGSMRRLMKDEPEYNRIATYQSINDAYVVEDY
                     GKCAMVTGLKFADS"
     gene            complement(7791..7973)
                     /locus_tag="JN078_002802"
     CDS             complement(7791..7973)
                     /locus_tag="JN078_002802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005054714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsid protein"
                     /protein_id="HAY9041948.1"
                     /translation="MNLVMSDITRNKLGCYMAQQVSLNNIPVSALVSRFTVEPAVQQR
                     FENASKESTEFTKKIT"
     gene            complement(7997..8833)
                     /locus_tag="JN078_002803"
     CDS             complement(7997..8833)
                     /locus_tag="JN078_002803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001262634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPO family capsid scaffolding protein"
                     /protein_id="HAY9041949.1"
                     /translation="MANEKKTSRKKFRVAVSGSTVDGREISPVHLREAAENFNPDVYA
                     ARVNVEHYLSPCPSSEFSAMGDVTALSTEEITEGPLAGRTALYAEIEPTERMKQLVAD
                     GKKIYSSIELHPQFSVNGRAYLVGLAMTDTPASLGTERLKFTAQQRQAVMTFNSIQGE
                     APLISEAIESEIIEMAEQRQEEGTQWFNRVMGIIGRGRKADDASFSRIQEAVEGVATS
                     QADIIDRFNVLETRHQQDRQKITSLTTELAALKEKLRTQDGDPQNRFTATGAASDQLA
                     DF"
     gene            8988..10739
                     /locus_tag="JN078_002804"
     CDS             8988..10739
                     /locus_tag="JN078_002804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001737206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HAY9041950.1"
                     /translation="MIQDAFVRQRARQLYWQGYPPAEISRLMGINPNTIYAWKKRDQW
                     DETPPGQRVTQSIDARLIQLTEKQNKTGGDFKEIDLLTRQLKKLHDGQPDVMAAGKKG
                     RAKKLKNHFTPEQIAALREKIISRLEWHQRGWFDSLTLCREAGIRNRMILKSRQIGAT
                     WYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDVELKGGDKI
                     ILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGLRRTYFS
                     TPSTETHEAYAYWNGDRWNEKKASHKRQRFSVDWKTLHNGLICPDRTWRQIVTLEDVV
                     NHGWKHTDIDEIRDENTEDEFLNLYMCEFVREGESAFNLNILIGCGVDGYDDWKDWKP
                     FAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPSVPGGRFRTVETRRVQGLEFEEQ
                     ARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSSKRSLVLKMLQ
                     IMRAGRWEYDRAERELVAAFNAVRKVKTPGGFITYETDRARGISHGDLAWATMLAVIN
                     EPIGGEGENERFTVMEF"
     gene            10739..11785
                     /locus_tag="JN078_002805"
     CDS             10739..11785
                     /locus_tag="JN078_002805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000087802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HAY9041951.1"
                     /translation="MSRKNKKVRMSSRIDLADALRKESSLSAFTFDGPYRLTGHDLLD
                     NMYCADNGRWYETPVDWYGLARAARQTSWHQSALYFKRNVLLGCYIPHPLLSRQDFSA
                     LALDWFVFGNAFLELRSNMLGEPLKLRHALAKYMRRGSDLESWRYVQDGKDAFQFRPG
                     KVCHLMNPDINQEIYGMPEYLGALLSASLSHSADMFRKLYYDNGSHAGCIIYIGAAQV
                     NRESMDSLKETLQGARGGGAFKNVLIHAPNGGKEGVQILPFQQITAKDEFMNVKAASR
                     DDVLAAHRVPPQLMGAMPGEKSAFGDVEKAARVYAINELMPVMEAMKHINDWLGEEVI
                     RFNPYALLDIQPTS"
     gene            complement(12276..12866)
                     /locus_tag="JN078_002806"
     CDS             complement(12276..12866)
                     /locus_tag="JN078_002806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001289969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ead/Ea22-like family protein"
                     /protein_id="HAY9041952.1"
                     /translation="MSEINYQALRERYSPVPVPKCPICGEEMSIQRISGAQVVYACSG
                     YGDDGDFKIGRTLADEHYEKSRVTVLDVGDPEVLALLDWLETKDNRIAELEKIATDYA
                     LKFQKAQDALKHAALLHSRTAQQTNNFAVSLPDISEYFINDVFQPLRYERDVERAIIK
                     AGGKALWQEKHEDRTHQSCDVNCGWFSPLTTDKNNT"
     gene            complement(12930..13241)
                     /locus_tag="JN078_002807"
     CDS             complement(12930..13241)
                     /locus_tag="JN078_002807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012907691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partitioning protein"
                     /protein_id="HAY9041953.1"
                     /translation="MTTPTRRISFYLKPTAVKNEGEACAWLDSLTPEARKSGQRVAFL
                     AGLALLKMNPAEAYRLAAWAGDEALSVTQTRTERPASQPVSTAQITSQMAGNIRALFP
                     E"
     gene            complement(13246..>13849)
                     /locus_tag="JN078_002808"
     CDS             complement(13246..>13849)
                     /locus_tag="JN078_002808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="stability/partitioning protein"
                     /protein_id="HAY9041954.1"
                     /translation="RKKANVMRPVEYQNGEAFTIRNVQVMPESIPAGFKALADMSPFE
                     SLLIVDLGGTTLDVAKVQGQLAGISQVFCDPHVGVSLMADAVLSVMATNGMRTSHHIA
                     NTIIEHRHDEAWLRQHIHNDAHYASLMAVIREKEETLKQRVIRALAVFSGYGRVMVVG
                     GGAEIVAPAIREACGVNATFIADGVPQFALVNGLYAMDKE"
BASE COUNT         2835 a         3862 c         3812 g         3340 t
ORIGIN      
        1 cgctgttagt ggcgctactg agttgaacaa agccttttgc ggtcagcgag gcgtccgggt
       61 gacgtcgtga ctgttcatgc tctttcagtt tgtcatccac gtaatccact gtggccatca
      121 ccatggtgtt gtccacggta agcgccacgg tggcagtgct ggatacggtc agaatggtgc
      181 gaaatgtttg tgcacgaccg gacccttcgg caacggctgg cttgtaactt tcggcagtat
      241 ttcccaccgc gattaaatcg ccgtgctcat caaatacacc aatttcccgg atccagaatc
      301 cgcccgtttc aggaggaata accagctccg caataatgcg gttctgatgt gttgcgtcca
      361 ggatgacgcg attaacagta tgtcgccaca cctcatgcac cagacgggtc tgcttactgt
      421 ctggtgtggg caacgtgccg ccaccgtcgc ccacggccat atgagtcagg cggacaggct
      481 taccatctgg cgcggctacc tgagctaatt tttttgcacc cgtatcggtg ataatggttt
      541 taaattttcg tgttgtggta ctcatgctta atcgcctgga taaatggtaa taacttcacc
      601 gtcataagtt gccgccgctg cgaaaatatc ccccggaatt tcctgaatga tattcagccc
      661 tgtcatgtgg cggctgaccg ggcgggcatc agcaatcaac cgctccattt ccagatacat
      721 ttcctccgtc acgccactgt ccagcgtgcc gacttcaacg gtaaatgttc ccggttctcc
      781 gccgaactcc caccactcag acacgcgaat gaggtatccc agcggctcaa tggcccggcg
      841 cagtgcgctg atggtccctt tgtgtcggtg tatcagccat gcatcacgaa taacctgtcg
      901 ctttgtctct tccggccagt tgcgatccca gcggtcaacg gaaaacgccc aggcgagata
      961 aggcagcaga tgcaccgggc aggtgtccgg cgaccacagc gtgttgaggt ctaccggaat
     1021 gtctgtaatg cgtgttccga cggcttcggc acaacgcatg aaattgctgg ctgatggtgg
     1081 taacaacgaa ttactcattg cgtccacctt cgctgatggt gaatgactca cagcgcgccg
     1141 cctgtatgtc gctgatggcc atattctgtg tgggttcgat tatctccacg cgttgcacac
     1201 cgtgcacatg cagtgcggca gcaatggcgg acaacgccac gtcctgaccg ataagcccct
     1261 gctcagccag ccacttcctg aacgacgatt cagccgcggc cagaataggt tcggattccg
     1321 ggccggggta aaagtacagt tttgcattca gccgccatgt cacgattctg gcactctgta
     1381 cggtcaggcg gtcggccacc gggcgggtat cctctgcatt cagaacggcg cgaacggtat
     1441 taagcaacgc ctccgttgct gtgccgtcgc cctcagtgga caggatggaa accgtcacgt
     1501 tggccggaga cgggctgatg gcccgcgcat cgcgtaccag accgctggcg ctgcgtgcaa
     1561 aatactcgta tgcacctgac gggccagcaa cactcagacc gtcatatgcc cgttgcgccc
     1621 gtagtctcag cgaggtgtca ctttccatca ctgcatcggt ggtatccgtt gccggagtga
     1681 taaccaggcg ctttgtgttc atattgcccg cgaggttgtc caggtctgtc ccggcgctgt
     1741 ggcttagcat gcaggcgcgt gcaccctcat tgacccgctg gcgtaacagc atttcacgaa
     1801 acgacatggt ttgagcgata acgttaaggg gttccgattc cagctccagc gcggcggaaa
     1861 cggcttcacg ctgttcggcg ggataggacg caatcatcat ggcctttgtg tcagccagaa
     1921 ttgcctcaaa gtcaggctcc gcgatgatgg cgggttccgg taactgtgaa aggtcaacgg
     1981 caggcatgat ttactccctc agcgtgatgg ttaattcaac attctgcatg gtctgcatga
     2041 cagtgcccga cagcgtcacc ccggcgcggc ctcctgcctt ccagacaacg tcgatagcgt
     2101 ccagggcaat gcggggttcc catcgtgtca gcgcaatcac ggcagcactc atgcattgca
     2161 gacgcgtggt gttattcatg ggttcgtcaa tcaaatcagg cacaaggctg ccatattccc
     2221 gtcgcataac ccggcttgcc agcggggtgg tcaggatgtc cctgactgac tgtttcaggt
     2281 gctccatatc gttcaggttt cccgttccgt ccgggttcat tcctgtgtag cgggttgtca
     2341 ctgcgggcct cctgtcgaat cgctgccacc tttaacgcca ccgtgtttat gcgtatgcac
     2401 tgtgatgccg tttgaggtga aattgccgcc gctgtgcgtg atattgccgc tcatctttcc
     2461 cccttttgtg acgtcaagcg tcgccgttct cagaaggtct gtgcattcca cgacgggcgt
     2521 atccagtgtc acgctgacgg atgcctgcag ggtggctgtt ttcatgccgc tggcgctcag
     2581 tgcgcctgcg tccgcgtcgt agcggaacac cgcgccatcc ggcgcgctga ccacgatttc
     2641 tttcaggctt ttgccggggg ccggaatggc atcactccac aggctgccaa ttatcatggc
     2701 ggtttccggg ttgccgccaa tgcaggcaat taccacctgt tcgcctggtg atggcggcag
     2761 ccacacattg aaggctcccg cgcgagaggt gttccagcgc agccaacctg tttccagttc
     2821 gccgctgcga acgcgcacgc gccaggactt ctcatcaact tcagagatga tcccggtgcg
     2881 gatgatattg ctcagtagcc gcatgagttc tgcgctcacc gtacagcctc cgcaatccgg
     2941 cccagcaccg tgttataaat caggcgctca tctgcctggc tgatacccag cagctcacgt
     3001 accgggtaat cggtgaaaat gcccggcgca acctgatcgc gctcaccgaa ctgatgaacg
     3061 cgtgcaatac gtgcggccac gccgctgtaa cccaccgtca caccggaagc atctgcacgg
     3121 gctttcaggt agcgggcggt gcgcagtttt acgaacatgg ggacgcgctt tgtgctgtcc
     3181 tggttgatgc gccgggtgcg tatttccaga aagcggtcga tgtcatcccg gtaaaacgtg
     3241 cggatgctgt ttttatcctc atcccacccg gtgatggttc gcccgtattt ccccgtgtcg
     3301 tgatgccagt ttttcagcgt gcgtgcttcg ttattccaga taaagcgaat gcgctcctgt
     3361 atccgggtta cgtggcgtct gcgtggtgtc catgcggtcc cgtccggcgc tttctgtggc
     3421 cggatacgtg cctgctgggc gcggcgtaaa tcctgtgcca gctttctggc gatgttattg
     3481 atggcctgct gattcaggct gtcgcggatg gcctcaaagg tttcatccac gcgagtgaat
     3541 gccttatcca tcgctttcac cccacgtcac atcctggaat acatgcgacc agtcgccttc
     3601 ggaagatggc aggcggggtt ttggctccag caggtgttct gcctgcggtg tgccctgact
     3661 gctgcgcgtg atgcgaacgc gttcccgcag ggggagcgta aacaggagat cggcgctgtc
     3721 atcgtcattg ataacggcgg aaaatttgat gtcctgatta cgctcagggt tgagcaacaa
     3781 ctgtggctga ttttcggata accacgccag cagcggcagc gtgaggtcgt ccagctcccc
     3841 ggcgtaatcc atgacaaaca tcaccatctg atagcggtaa acaaacgatg gggtttctcc
     3901 ggtcgtttca atgttgccgc tctccacgaa aatggtgaat ttttccgggt tagcctgaca
     3961 ccatcggcat gaacgggtca tggcttcacg cagggaatca gttttcagca tggttgttat
     4021 cctcgttgtt cagtcgttgc agcctgcgct gttccagtaa ttcaatggcc cgtttatccg
     4081 cgttacaggt ttccagtgca tccagaaggc ggtcgcccca tataccgaga tttccccatg
     4141 tgggagtgtc agggaagggg ggaggcgtta ccggtatggt cagcgtctgc ggtataagcc
     4201 ggactgacgg cgctggcagt ggcgcgttct gtgtgcctgc gcagcctgtc agtaaaacga
     4261 gcgtcaggca aagcgtgggc gcattcatct tttgcaatat cgttgcgtag ctgttcacgt
     4321 cttacctctc cgtcctgatt gcgttgctga ttttccacgc ggagttgcgc cagcacctgc
     4381 tgcatatcct gtaccccggc gctgatgata ttcagggtgt cggcggtact tttcagggtg
     4441 ctggcctgcg cttcgtttct ggcgttctcc cggcccagcg accacgacag acgcatggat
     4501 gttccccatc cggcagtcag aaggaaagcg acgccaagcg tgggccagag cttcatgccg
     4561 gataggctcc gtgtggtaac tgaaaatgcg gtccgtcttt cagggtcttc cagtcgccgc
     4621 cccattccac cggaatattc agttcccggc tggcctgtct gaatgctgct gcgatttttt
     4681 cgtacagcgg ccattcccat gacatctggc tgccgatata agccacaaca tccacggcat
     4741 gccccgtaag gtggcggctg ttcatggtct ggctcttacc cgtggccacc agttgcttct
     4801 ggcggtaacg gctgcgcaac ccttcggtga taccaaaatc cacttccgag atttccagtg
     4861 cccgtcgggt cactttcacc agatcaggat ttacaccctg caaattcttt tcgctccggc
     4921 tgctgaattt aaatgtgttg ctcattcgtc cttctccttc accctgcgat taaaggccgc
     4981 aataaccttg tcgcgtgctt tctctgcacc cataaaaccg attgatgcgc cgataaacgt
     5041 cacggcatct tcaggaaacc cgaagaagcg caacgacccg gccacggcca tggcaagaac
     5101 gccgcacgcc agcgatcccg ttacggtctg aaccagtgtt cgtccgtcat aaaggctcat
     5161 cagcgcggaa atgctgaccg ccgcgcctac tgcatacacc gttggcaggt ggtcaaagag
     5221 ccacgcaata acctgctctg tgatccctgt ttgaatggtg ctcactgcta ctccccccac
     5281 aactgaatca tttctcgttt cttcttctcc ggctccggca tctccacttc ctgcccggcg
     5341 tccagaaata cctgctgaca gagtccgggg ttggcatcca gcaccttttc ggtgacgccc
     5401 tgcgtcgtgc cgtagtaccg gaaacagagc gaatccacgg tgtcgccttc cagtgccttc
     5461 actttcatca gcacaactcc gcaaagattc gcgggcggca cagaatgtca gagatggccc
     5521 agctcacatc acgccacaaa tccgatgtct gtatatccag agcgtctgcc cggcggtcgc
     5581 ccttgtccgt agtgtctgca tcacgataac gctccagaat cagggcgcgc gtggcggtat
     5641 aaacagcatt gcgccagtgc cagagattga cgctttctcc gttaattacg ggtgccggaa
     5701 catcggccag cgtctgatgg ccagctgcct gctgttcctg ctgccatgct tccagctcgc
     5761 gggtaacgtg tgccacagcc ccggtggcag tatgcagcag gcgggaggtg gtcacgcgcc
     5821 ccggcagtcg taccgccaga cgcagctcgc gcagcacaat atccggccag aatgcacccg
     5881 ctgaaatgcg ggtatcgcca tcatcggtat cggtgatgtc gtcctctgcg ggtccgggtt
     5941 cagttctggc aactatagtc atggggttca ctcctgaaaa aaaatcgggc ggtgggtgcg
     6001 cggtgtaaac ggtcacggag tcaaactgga acaccgcgca cgccgcccgc tgacggggtc
     6061 agtcgttaac cgcgcttcgc cttctgcgtc gcggtggttt ttcgtgttgc aggcttccgc
     6121 gttgtctttt tacttttgct gctttttgct gctttcgtcc tgcgcctgct gtgcgctggc
     6181 gtcttctggt tcggctgcgg aatcggcttt tttcagggcg cgggaaaggg ttgcaatctc
     6241 gcgtttcaca cctgcgttcg ggttcaggtg cattgcttcg cgcagcagct tcagtgacag
     6301 ggccatgctg tccgcatcac tcaggccacg gcgggcaaag gcgcacgctt tgcataattt
     6361 ggcgcgcact tcgtccggca tgtcctggtc ggtgacaatc tcccggaggg tgtccagtgg
     6421 ttcgataaag gcggacaaat ccgcgtcggc atccgtcccg gcctgcgtca gtaccggatt
     6481 acagatttct tcggtcagta ccgtggcagc agtacggcca aagttatccg gcatgatgag
     6541 gttgtgacgg actacatacg cgccgatacg cagcgcaagc ggaagatcgc cacagtcaat
     6601 cgcccacacc atcagcgtgg caatcacttc atcctgctgc ccgccgtcag cctccagcgt
     6661 tccctcaatc cagccggaaa aatccggcaa caactctttt ttgatggcgg ctttcgcgct
     6721 tctggcctgt acgcccttaa gccgggcctg tgccagacgc agacgataca gcacctcttc
     6781 atgcgcggta cgcgcggcgt ggtccacgcc ttcattcgcc cggcctgcgc gctgtgccat
     6841 cacgttctgc cagtgttgtt gtgcaggagt aatcattttt gctctccgtt acaggcgggc
     6901 atgatgcccg ccgtgagttg attagctgtc ggcgaacttc aggccagtaa ccatcgcgca
     6961 cttgccatag tcttcaacga cataagcgtc attgatggac tggtaggtgg cgatgcggtt
     7021 gtattccggc tcgtctttca tcaggcgacg cattgaacct ttctgccagt aaatcgacag
     7081 gttgttgaac gaggtgatca gcatcgttgc atccgggaag aacggcgcaa ggaacacgcc
     7141 cagcccgcca atggtgcgcg atgacaggat gagctgcccg gcgagtaatt ccgcattggg
     7201 attctggccg ctgatgctgt tcagcacggg cagacgcagc gagttaaaca ggttgcgccc
     7261 cataatcacc acgaggtcgt cagcttcctt gtgccattca tccagcaggg atgaacgcgc
     7321 gtcctgtacc agtgcatcag cgttcgcata cttacccgcg tgcgccacgg tgttgtccat
     7381 gttgcgggag gtcagcgtca cgtcattcat aacgcgttcg ctggcgtcgg ttctgatgtg
     7441 ctccagccag cccacgttaa cgtcctgaag cagcttgttg gtgctgaagt tggactcatc
     7501 cgcgtgagac gtgccgttga aaccgatcat gatgcggtca agcgccacct gtcgggcaat
     7561 ctgtgcgctg atgcgggact gaaaatcagg gtgtgccgac caggcatcaa gctgcggata
     7621 cgaaataaac gtgtcgtagt tcacctgttc acactgatat ttgcggtttt tcagatcaac
     7681 cacgttattc gggttacggc gttttgtgcc gtcataactg gtattcgtgc gcgcaatcgg
     7741 tcctgtggta tccaggagga ttttttcgcc tttctggtcg gtcacgccga tcacgttatt
     7801 tttttcgtaa attcggtact ttcctttgag gcgttttcaa aacgctgctg caccgcgggt
     7861 tccacggtaa atcgcgacac cagtgcagat accgggatat tattaagcga cacctgctgc
     7921 gccatatagc aacccagctt gttgcgggta atatctgaca tcaccagatt cataaaaaat
     7981 ttgctccttt gtctaatcag aagtcggcca gctggtcgga ggctgcgccc gttgcggtga
     8041 agcggttctg cggatcgccg tcctgcgtgc gcagtttttc cttcagtgct gccagctctg
     8101 tggtcagtga cgtaattttc tggcggtcct gctgatggcg ggtttccagc acattaaaac
     8161 ggtcgataat gtcggcctgt gacgttgcga cgccttccac cgcttcctga atacgggaaa
     8221 aactggcgtc atccgctttg cggccacggc caataatccc cattacgcgg ttaaaccact
     8281 gggtgccttc ttcctggcgt tgttctgcca tttcgatgat ttcagactcg atggcttcgg
     8341 agataagcgg cgcttcaccc tggatactgt taaacgtcat caccgcctga cgttgctgtg
     8401 ccgtgaattt caggcgctca gtgcccaggc ttgccggggt gtcggtcatc gccagcccga
     8461 ccagataggc gcgcccgtta acggagaact gcgggtgcag ttcgatactg gaatagattt
     8521 tcttgccgtc cgcaacaagc tgcttcatgc gctcggtcgg ttcgatttct gcatacagcg
     8581 cagtacgtcc ggccagcgga ccttccgtaa tctcttccgt actcagtgcg gtgacatcgc
     8641 ccattgcgga aaattcgctt gacgggcatg gcgagagata gtgctcaacg ttcacgcggg
     8701 cagcgtaaac atccgggttg aagttctcgg cggcttcacg cagatgcacc ggactgattt
     8761 cacggccatc aacagttgat ccggagacag ccacgcgaaa ctttttgcgg gatgtctttt
     8821 tttcattagc catagttttt gcccctctga ctggttcttc agtcatgatg gcaaagcgta
     8881 acaggctgat acaaagggct tttgttgtaa gaaaacggcc agaacagagg gttaaggaga
     8941 acagtttcgc gcgcgggtaa tcttcctgta attactcagg gggagcaatg attcaggacg
     9001 cttttgtgcg ccagcgtgcg cggcaacttt actggcaggg ttatccgccc gcagaaatat
     9061 cacgtctgat gggaataaac ccgaacacga tttatgcgtg gaaaaaacgt gaccagtggg
     9121 atgaaacgcc acccgggcag cgtgtcacgc agtccatcga tgcgcgcctc atccagctta
     9181 ctgaaaaaca gaataaaaca ggcggtgact ttaaggaaat agacctgctg acccggcagc
     9241 ttaaaaagct gcatgatggc cagccggatg tgatggccgc aggaaagaaa ggccgggcga
     9301 aaaaactcaa aaatcatttc acgccggaac agattgccgc actgcgggaa aaaatcatca
     9361 gcaggctgga gtggcatcag cggggctggt ttgactccct gaccctttgc agggaagccg
     9421 ggatacgtaa caggatgatc ctgaaatccc gacagattgg ggcgacctgg tattttgcac
     9481 aggaagcact gctgatggcg ctgcgtgacg atgtggcgca accttaccag cgtaaccaga
     9541 tttttttgtc tgcgtcgcgt cgtcaggcgt tccagtttaa aagcattatt cagaaggccg
     9601 cggctgaagt tgatgtggag ctgaaagggg gcgataaaat catcctctcc aacggcgcag
     9661 agctgcattt tctcggcact tctgctgcgt cggcacagtc ctatacgggc aatttttatt
     9721 ttgatgaatt tttctgggtc agtcgctttg ctgaactgcg caaggtggct ggcgctatgg
     9781 caaccctcag cggactgcgg cgcacctact tctccacgcc atccaccgaa acgcacgagg
     9841 catacgccta ctggaacggc gaccgctgga acgagaaaaa ggcctcgcat aaacgccagc
     9901 gtttttctgt ggactggaaa acgctgcata acgggcttat ctgccctgac cggacgtggc
     9961 ggcaaattgt cacgctggaa gatgtggtta atcacggctg gaaacacacc gatatcgacg
    10021 aaattcgtga tgaaaacacc gaagacgagt tcctcaatct ctatatgtgt gagtttgtcc
    10081 gcgaagggga atcggcattt aacctgaata tcctgattgg ctgcggcgtt gacggatacg
    10141 acgactggaa agactggaaa ccttttgctc cccgcccgat ggggaatcgt ccggtatgga
    10201 ttgggtatga cgcaaacggc agcagtggca acggcgacag cggcgctgtg tccgtggtgg
    10261 ttcctccgtc tgttcctggt ggccgttttc gaacggtgga gacgcgacgc gttcaggggc
    10321 tggagtttga agaacaggcc agagtcattg aagagttcac gtgtcgctac aacgtggaac
    10381 acatcggcat tgatgtgacg ggcgggaacg gggaggctgt ttatcagata gtgaaacggt
    10441 ttttccctgc cgctattccg tacaccttca cgctgtcatc aaaacggtcg ctggtactga
    10501 aaatgctgca aataatgcgt gccgggcggt gggaatacga tcgcgccgaa cgcgagctgg
    10561 tcgcggcctt taacgccgtg cgtaaggtga aaacaccggg cggctttatc acttacgaaa
    10621 cggaccgagc gagggggatc agccacggcg accttgcgtg ggcaaccatg cttgctgtca
    10681 ttaacgaacc gattggcggc gaaggagaaa acgagcgttt cacggttatg gagttctgat
    10741 gagcagaaaa aataaaaaag tgcgcatgag ttcacgcatt gatctcgctg atgcgctcag
    10801 gaaagaatca tcgctcagtg cattcacatt tgatggtcct tatcgcctga ccgggcatga
    10861 cctgctggac aatatgtact gtgctgataa cgggcggtgg tatgaaaccc cggtggactg
    10921 gtacggtctg gcaagagctg cccggcaaac gtcctggcat cagtctgcgc tttattttaa
    10981 gcgcaatgta ttgctcggtt gctacatccc gcacccgctg ctttcccggc aggatttctc
    11041 ggcgctggcg ctggactggt ttgtgttcgg taacgcattc cttgagcttc gaagcaatat
    11101 gctcggcgaa ccgcttaaat tacggcacgc cctggcgaaa tacatgcgac gcggaagcga
    11161 tcttgaatca tggaggtatg tgcaggatgg caaggatgcg tttcagtttc gcccaggcaa
    11221 agtgtgtcac ctgatgaatc ctgacattaa ccaggaaatc tacggcatgc cggaatatct
    11281 cggcgcatta ctctcggcca gcctgtctca ttcggcggac atgttcagaa aactgtatta
    11341 cgacaacgga tcccacgccg ggtgcatcat ctacatcggt gccgcgcagg taaaccgcga
    11401 aagcatggac tccctgaaag aaacgctaca gggtgcgcgt ggtggtggtg cgtttaaaaa
    11461 cgtgctcatt catgcgccca acgggggcaa agagggggtg caaattttgc cgttccagca
    11521 gatcaccgca aaggatgagt tcatgaatgt taaggcggca tcccgtgatg atgtgctggc
    11581 tgcgcaccgc gttccgccgc aactgatggg ggcgatgccg ggtgaaaaaa gtgcgtttgg
    11641 tgatgtggag aaggccgcgc gggtttacgc aattaacgag ctgatgcccg tcatggaggc
    11701 catgaagcac atcaatgact ggcttggcga agaggtgatc cgctttaacc cttacgcact
    11761 gttagacatc cagcccacat cctgacgcgc ttcgcttgtc tgctgcttcg ccggggcata
    11821 aaaaatttat gccccgactc tccagctcct gtatcagtca gataatttca cgacgccttc
    11881 cagtttatcg ccaccatcga cggtcagact cttacgcaat cccaccgcgt tgactgcatg
    11941 ttctcgccgc ctcagtgcga ttttgacggc cttacctttc accccatcaa atcagaatcc
    12001 ctcacgtatt tttcacgctc agcgtgagaa atacggccat tctgtcgtgt cgctgcgaca
    12061 tcgttaaggg aacgctattt accccctgaa acgcgggctg ttcccccgtc acctgcgcgc
    12121 agaaaaagcg cgtttttttg tgcacgcacg gatccttgac ggatccagcc gccacgcggg
    12181 ctggaagggc aaaaattcgt tcaaaaaaat tgtgcaaatt tgtgcactat tgtgcagcag
    12241 ggcgatgtgc gattatcgcc ctggtttgag ggggatcagg tgttattttt atctgtcgtc
    12301 agtgggctaa accatccaca atttacatcg catgactgat gcgttctgtc ctcgtgtttc
    12361 tcctgccaca atgcttttcc gccagccttt atgatggctc tttcaacatc ccgctcgtat
    12421 cgcaagggct gaaatacgtc attaatgaaa tattcgctta tgtccggaag cgatactgca
    12481 aaattatttg tttgttgcgc cgtcctgcta tgcagcaaag cggcatgctt taatgcgtcc
    12541 tgtgctttct ggaatttaag tgcatagtca gtggcgattt tttccagttc agcgattcgg
    12601 ttgtctttgg tttccagcca atcaagtagc gccaatactt caggatcccc gacatccaac
    12661 actgttacgc gtgatttttc ataatgttcg tcagcaagag ttcggccaat tttgaaatct
    12721 ccatcatcac cataaccgga gcaggcataa acaacctgtg ctccagatat tcgctgaatt
    12781 gacatttcct cgccgcaaat agggcatttc ggtactggca caggtgaata acgttcacgt
    12841 aatgcctgat agttgatttc gctcattaag tcgttctcct tgtttatgtt ctgaggtgga
    12901 gagcagggcg aactcgccct gatgttgtgt tattcaggaa ataacgcccg gatatttccg
    12961 gccatctgac tggttatctg tgcggttgat actggctgtg atgcggggcg ttctgtcctg
    13021 gtttgtgtca ctgataacgc ttcatcacca gcccatgcag ccagtcgata agcctctgcc
    13081 ggattcattt tcagaagtgc cagcccggcc agaaaagcca cgcgttggcc gcttttgcgg
    13141 gcttctggtg taaggctgtc cagccaggcg catgcttctc cttcgttctt gacggcggtg
    13201 ggcttcagat agaaacttat ccgtctggtt ggagtcgtca ttggtttact ccttgtccat
    13261 tgcgtacagc ccattaacca gagcaaactg tggcaccccg tccgcgatga aagtcgcatt
    13321 aactccgcag gcttcgcgga tagcgggtgc cacaatctcc gcccctccac cgacaaccat
    13381 cacccgcccg taacccgaaa aaaccgccag cgcgcggatc acgcgttgtt tcagtgtttc
    13441 ttccttttca cgaattaccg ccatcaggct ggcgtaatgc gcgtcattgt ggatgtgctg
    13501 gcgcagccag gcttcatcat ggcgatgttc gataatggta ttggcgatgt ggtgactggt
    13561 gcgcataccg ttagtggcca tcaccgacag tacggcatcg gccatcagag aaacgcccac
    13621 gtgtggatcg caaaacacct ggctgatacc tgccagttgc ccctgaacct ttgccacatc
    13681 cagcgtggtt ccgcccaaat ccacaatcag cagggattca aacggactca tgtcagccag
    13741 tgccttaaag ccagccggaa tggattcagg cataacctgt acgttacgga tagtgaatgc
    13801 ttcgccgttc tggtactcca ccgggcgcat gacgttcgct tttttgcgg
//
LOCUS       DADMJB010000108        13638 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.108, whole genome shotgun sequence.
ACCESSION   DADMJB010000108 DADMJB010000000
VERSION     DADMJB010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13638)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13638)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13638
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.108"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(1..1867)
                     /locus_tag="JN078_002809"
                     /pseudo
     CDS             complement(1..1867)
                     /locus_tag="JN078_002809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311868.2"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine decarboxylase"
     gene            2265..2963
                     /locus_tag="JN078_002810"
     CDS             2265..2963
                     /locus_tag="JN078_002810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HAY9041955.1"
                     /translation="MVIGPFINASAVLLGGVLGALLSQRLPERIRISMTSIFGLASLG
                     IGILLVVKCANLPAMVLATLLGALIGEICLLEKGVNTAVAKAQNLFRHSRKKPTHESF
                     IQNYVAIIVLFCASGTGIFGAMNEGMTGDPSILIAKSFLDFFTAMIFACSLGIAVSVI
                     SIPLLIIQLTLAWAAALILPLTTPSMMADFSAVGGLLLLATGLRICGIKMFPVVNMLP
                     ALLLAMPLSAAWFA"
     gene            3069..3144
                     /locus_tag="JN078_002811"
     tRNA            3069..3144
                     /locus_tag="JN078_002811"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3102..3104,aa:Phe,seq:gaa)
     gene            complement(3293..3829)
                     /locus_tag="JN078_002812"
     CDS             complement(3293..3829)
                     /locus_tag="JN078_002812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HAY9041956.1"
                     /translation="MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAV
                     VFLFSVGYYVLIWQPLSERIVQQETMLQQLVAMNTRLRSAAPDIIAARKSATTTPAQV
                     SRVISDSASAHSVVIKRIAERGENIQVWIDPVVFNDLLNWLNALDEKYALRVTQIDAS
                     AAEKTGMVNVQRLEFGRG"
     gene            complement(3831..5009)
                     /gene="gspL"
                     /locus_tag="JN078_002813"
     CDS             complement(3831..5009)
                     /gene="gspL"
                     /locus_tag="JN078_002813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000097227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspL"
                     /protein_id="HAY9041957.1"
                     /translation="MSSILEIFFPLCAADPIHWQRRTPDVEHGIWSDVANEQLQQWLQ
                     TDAIRLYIPGEWISVWQVELPDVARKQIPTILPALLEEELNQDIDELHFAPLNIDQQL
                     ATVAVIHQQHMRNIAQWLQENGITRATVAPDWMSIPCGVMAGDAQRVICRIDECRGWS
                     AGRALAPVMFRAQLNEQDLPLSLTVVGIAPEKLSAWAGADAERLTVTALPAVTTYGEP
                     EGNLLTGPWQPRVSYRKQWARWRVMILPILLILVALAVERGVTLWSVSEQVAQSRTQA
                     EEQFLTLFPEQKRIVNLRSQVTMALKKYRPQADDTRLLAELSAIASTLKSASLSDIEM
                     RGFTFDQKRQILHLQLRAANFASFDKLRSALATDYVVQQDALQKEGDAVSGGVTLRRK
                     "
     gene            complement(5006..5983)
                     /gene="gspK"
                     /locus_tag="JN078_002814"
     CDS             complement(5006..5983)
                     /gene="gspK"
                     /locus_tag="JN078_002814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001554494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspK"
                     /protein_id="HAY9041958.1"
                     /translation="MITSPPKRGMALVVVLVLLAVMMLVTITLSGRMQQQLGRTRSQQ
                     EYQQALWYSASAESLALSALSLSLKNEKRVHLAQPWASGPRFFPLPQGQIAVTLRDAQ
                     ACFNLNALAQPTTASRPLAVQQLIALISRLDVPAYRAELIAESLWEFIDEDRSVQTRL
                     GREDSEYLARSVPFYAANQPLADISEMRVVQGMDAGLYQKLKPLVCALPMIRQQININ
                     TLDVTQSVILEALFDPWLSPVQARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQL
                     KTVLSVDSNYFWLRSDITVNEIELTMNSLIVRMGPQHFSVLWHQTGESE"
     gene            complement(5986..6585)
                     /gene="gspJ"
                     /locus_tag="JN078_002815"
     CDS             complement(5986..6585)
                     /gene="gspJ"
                     /locus_tag="JN078_002815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001255030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspJ"
                     /protein_id="HAY9041959.1"
                     /translation="MRRTRAGFTLLEMLVAIAIFASLALMAQQVTNGVTRVNSAVADH
                     DQKLNLMQQTMSFLTHDLTQMMPRPVRGDQGQREPALLAGAGVLASESEGMRFVRGGV
                     VNPLMRLPRSNLLTVGYRIHDGYLERLAWPLTDAAGSVKPTMQKLIPADSLRLQFYDG
                     TRWQESWSSVQAIPVAVRMTLHSPQWGEIERIWLLRGPQ"
     gene            complement(6582..6953)
                     /gene="gspI"
                     /locus_tag="JN078_002816"
     CDS             complement(6582..6953)
                     /gene="gspI"
                     /locus_tag="JN078_002816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001709020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspI"
                     /protein_id="HAY9041960.1"
                     /translation="MKRGFTLLEVMLVLAIFALAATAVLQIASGALSNQHVLEEKTVA
                     GWVAENQTALLYLMTREQRAVRHQGESDMAGSRWYWRTIPLNTGNALLQAVDIEVSRH
                     EDFSSVIQSRRAWFSAVGGQQ"
     gene            complement(7013..7513)
                     /gene="gspH"
                     /locus_tag="JN078_002817"
     CDS             complement(7013..7513)
                     /gene="gspH"
                     /locus_tag="JN078_002817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001115132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspH"
                     /protein_id="HAY9041961.1"
                     /translation="MPERGFTLLEIMLVIFLIGLASAGVVQTFATDSEPPAKKAAQDF
                     LTRFAQFKDRAVIEGQTLGVLIDPPGYQFMQRRQGQWLPVSATRLSAQVTVPKQVQML
                     LQPGSDIWQKEYALELQRRRLTLHDIELELQKEAKKKTPQIRFSPFEPATPFTLRFYS
                     AAQNAC"
     gene            complement(7517..7972)
                     /gene="gspG"
                     /locus_tag="JN078_002818"
     CDS             complement(7517..7972)
                     /gene="gspG"
                     /locus_tag="JN078_002818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003912123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system major pseudopilin GspG"
                     /protein_id="HAY9041962.1"
                     /translation="MNSLSRTHKPRAGFTLLEVMVVIVILGVLASLVVPNLLGNKEKA
                     NRQKAISDIVALENALDMYRLDNGRYPTTEQGLEALIQQPANMADSRNYRTGGYIKRL
                     PKDPWGNDYQYLSPGEKGLFDVYTLGADGQENGEGAGADIGNWNLQEFQ"
     gene            complement(7989..9212)
                     /gene="gspF"
                     /locus_tag="JN078_002819"
     CDS             complement(7989..9212)
                     /gene="gspF"
                     /locus_tag="JN078_002819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001173399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system inner membrane protein
                     GspF"
                     /protein_id="HAY9041963.1"
                     /translation="MALFYYQALERNGRKTKGMIEADSARHARQLLRGKELIPVHIEA
                     RMNASAGGMLQRRRHAHRRVAAADLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHV
                     KSLGMALRSRIQEGYTLSDSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQ
                     RQRLKSRLLQAMLYPLVMLVVATGVVTILLTAVVPKIIEQFDHLGHALPSSTRALIAM
                     SDALQASGVYWLAGLLALLVLGQWLLKNPTMRLRWDKTLLRLPVTGRVARGLNTARFS
                     RTLSILTASSVPLLEGIQTAAAVSANRYVEQQLLLAADRVREGSSLRAALAELRLFPP
                     MMLYIIASGEQSGELETMLEQAAVNQEREFDTQVGLALGLFEPALVVMMAGVVLFIVI
                     AILEPMLQLNNMVGM"
     gene            complement(9212..10704)
                     /gene="gspE"
                     /locus_tag="JN078_002820"
                     /pseudo
     CDS             complement(9212..10704)
                     /gene="gspE"
                     /locus_tag="JN078_002820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001525635.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system ATPase GspE"
     gene            complement(10704..12764)
                     /gene="gspD"
                     /locus_tag="JN078_002821"
                     /pseudo
     CDS             complement(10704..12764)
                     /gene="gspD"
                     /locus_tag="JN078_002821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020234996.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system secretin GspD"
     gene            complement(12794..13623)
                     /gene="gspC"
                     /locus_tag="JN078_002822"
                     /pseudo
     CDS             complement(12794..13623)
                     /gene="gspC"
                     /locus_tag="JN078_002822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016238556.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspC"
BASE COUNT         3056 a         3933 c         3518 g         3131 t
ORIGIN      
        1 agcgctatgc gcatcctggg ggttcatcac cactgacggg aaactctgct ggcggaacat
       61 cgctttttgt aggtctttga cgtcgaaact gacatacaga tcgtgcatct cctgacacaa
      121 ctggcgcaaa gtgtagtcgc gatagcgcac cggatatttg ttataaacgc tcggcaacac
      181 ctcagccagc ggcgagtcat cctcaatatg ctgttcaaac tgcgccaaca tctctaccag
      241 ttgtgccagc ttctcgtggc tttccgccgg agttaataag aacagaatgg agttgagatc
      301 gcacttctcc ggcacaatgc cgttctcacg cagatagtgc gccagaatcg tcgccggaac
      361 gccaaagtcg ctatattcgc cggtttcggc attgatacct ggtgtagtga gtaacagctt
      421 gcacggatca acaaaatact gatccgcggc atatccttca aagccgtgcc acttcgcccc
      481 cggctcaaaa ctgaaaaaac ggcggtcgct ggctaacact gatgtcggat aatcctgcca
      541 caatttgcca tcaacaacgg gcgggataaa cgggcggaac agcttacagc gcgcaagaat
      601 agccttgcgc gactcaatac ccaactcaac gcactcagcc cacagccgac gcccactctc
      661 cccttcatga attttggcgt taacatccag tgcagcaaac agcggataga aagggctggt
      721 agaagcatgg agcataaagg cgttattcaa ccgcttatgc gggcaaaaac gcgcctgtcc
      781 gcggatatgg ttatcttttt tatggatctg cgacgtctgt gagaatcccg cctgctgttt
      841 gtgcaccgac tgagtcacaa agatccccgg atcgttttcg ttaagttcta atagcagcgg
      901 cgagctatcc gccatcatcg ggataaactg ttcgtaaccg acccacgcgg aatcaaacag
      961 aatgtaatca cacagatgcc caacggtatc gatcacctga cgggcgttat agacagttcc
     1021 gtcataggtt cccagctgaa taatcgccag gcgaaacggg cgcggcagct cggctttttc
     1081 tggcgcaacg tcgcgaattt gctggcgcag atactcttca ttaaaacagt gcgcatcaat
     1141 accgccaatg aaaccaaacg ggttgcgtga agcttccaga tagaccggcg tcgcccccgc
     1201 ctgaatcagc gcgccgtgat gattcgactt atggttgtta cggtcgaaga gcaccagatc
     1261 gccacgcgtt aacagcgcat tcgtcaccac tttattcgct gccgatgtgc cgttcagcac
     1321 aaaataggtt ttatcggcat gaaagacttt ggctgcgaat ttctgcgcat ctttcgccaa
     1381 taagcagatc gcccaatttt acgtcagcgt tacacatatc ggcgcgaaag acgttctcac
     1441 caaagaaatc gtaaaaatgg cgtccggcag gatgcttttt aaaaaacgca ccatgttgat
     1501 gtccagggca agcaaaggtg ctgttgccca tctcaacgta ctgcgtcagc gtgtcataaa
     1561 acggtggcag caaattctct tcatactgac aggctgcgga ttccagctcc agccactgct
     1621 gctcgttgcc gttgattacc gccgtaacgc ccgcaggtaa ttcaacagca tgttcggaat
     1681 acaaaaacac cggtagatga aaaccggtgc gcttaagcaa cgcaagaatg ccactgcgac
     1741 tatccgcagc ggtaatgacg actgccacga cgtccgtaaa atcagtatct cccaacgcca
     1801 ccacgcgacg atgagaagaa agtcgggata ccagttcact actggcggca atattcattg
     1861 atttcataag cgcaaacccg tttcggggaa gtaagaatac cggacaaggt ggaaaaccct
     1921 gccccatgag atatgggtca aactggtcac cagctccgac cgccagacat cagtaaaagc
     1981 agaaacgctc tgattttact gttgtcctgc agtgagcgtg cgttaacttc accgcatgag
     2041 cagtaacata gaaagggaaa cgtttcgcgc gaaacggcga taagcgagag aatgtaagga
     2101 ggtggcgtgc atcgggcaaa ctccgtacag agaggagaaa attcgcgcaa tcatggcacc
     2161 tttcgctaaa gcgtgcaagc caggactttg cgaccagaca agccatcaac aaggcaaaaa
     2221 gttcataata agaaaatcaa acaatacagt taacaggaac tcttgtggtc atcggccctt
     2281 ttatcaacgc tagtgcagtc ttactgggtg gcgttctcgg cgcactgctc agccaacgct
     2341 taccggaacg tatccgcatc tccatgacat ctatttttgg tctggcatcg ctggggattg
     2401 gtattttact ggttgtgaaa tgcgccaacc ttccagcgat ggttttagct acgctacttg
     2461 gcgctctaat tggcgaaatt tgtttgctgg agaaaggtgt caatacagca gtcgccaaag
     2521 cacaaaatct gtttcgtcac tcacgtaaga agccaacgca tgaatctttt attcagaatt
     2581 atgtcgcgat tattgtcctg ttttgcgcca gcggcaccgg gatcttcggg gcgatgaacg
     2641 aagggatgac cggcgatccg agtattttaa tcgccaagtc atttcttgat ttctttacgg
     2701 cgatgatctt cgcctgctcg ctgggtattg cggtgtcggt aattagtatc ccattactga
     2761 tcatccagtt aacgctggcg tgggctgccg cgctgatatt accgctgacc acaccgtcga
     2821 tgatggcaga cttcagcgcc gtaggcggtt tattgctgct ggcaaccgga ttacgcatct
     2881 gtggcattaa aatgttcccg gtggtcaaca tgcttccagc actccttctg gcaatgccgc
     2941 tttccgccgc ctggtttgcc tgacaatgcg tgcaatagcg gcaaagtgat gatagattgt
     3001 gcagtctgca gtaaattgaa gaaatttgat tgacgagacg aggcgaatca ggtttaatgc
     3061 gccccgttgc ccggatagct cagtcggtag agcaggggat tgaaaatccc cgtgtccttg
     3121 gttcgattcc gagtccgggc accactaatt cttaagaacc cgcccacaag gcgggttttt
     3181 gcttttggat ctgacaataa ccttcacgaa aaaagtttgc ttataaagtc tgggggaatt
     3241 actctcgcca cgttaacgag agtaatttta ttgatactaa tctcctgata ctttaccccc
     3301 gtccaaactc cagccgctgg acattcacca tcccagtctt ctcagcagca ctggcatcaa
     3361 tttgtgtcac ccgcagcgca tacttttcat ccagcgcgtt taaccagttc agcaggtcat
     3421 taaacaccac cggatctatc cagacctgaa tattctcccc acgctcggct atccgcttga
     3481 tgactaccga gtgcgcggaa gcactgtcac tgataacccg cgatacctgc gcaggcgttg
     3541 ttgtggcgga ttttcgcgcc gcaataatat ccggcgcggc gctcctcagt ctggtgttca
     3601 tcgccaccag ttgctgcaac attgtctcct gttgtactat ccgttcgctc aacggctgcc
     3661 agatgaggac gtaatatccg acgctaaaca ggaacaccac cgctgccagt aacatgccct
     3721 tttcacgcgg agaacgcccc gccaggtgtt gtgccagcca gtgttcgcca cggcttaact
     3781 ggcgttcacg ccattgctga aaatagtgaa taaatttatc gcgtaacatg ttatttcctc
     3841 cgcaacgtta cgccgccgga aaccgcatca ccctctttct gtaacgcgtc ctgttgcaca
     3901 acataatcgg ttgccagtgc actacgcagt ttgtcgaaac tggcaaagtt cgcggcccgt
     3961 agctggaggt gaagtatctg gcgtttttga tcaaaggtaa aaccacgcat ttcgatgtcg
     4021 gaaagtgacg ctgatttcag ggtgctggct atcgctgaca actcggcgag cagccgggta
     4081 tcgtcggcct gtgggcgata ttttttcagc gccatcgtca cctgagagcg taaattcaca
     4141 atccgcttct gctccgggaa caacgttaag aactgttcct ccgcctgggt gcggctttgc
     4201 gccacctgtt cgctgacgct ccataacgtc acgccccgct ccactgccag cgcaactaga
     4261 atcagcaata tcggcagaat catcacccgc cagcgcgccc actgttttcg gtagctgacg
     4321 cgaggctgcc acggccctgt cagcaggttc ccttccggtt cgccataagt ggtaacggcg
     4381 ggcagagctg taacggtcag gcgttcagcg tctgcgccag cccatgctga tagcttttcc
     4441 ggtgcaatgc cgactacggt tagcgaaagc ggtaaatcct gctcattgag ctgggcgcgg
     4501 aacatgaccg gagccagcgc ccgcccggcg ctccatcccc ggcattcatc aatgcggcag
     4561 ataacccgtt gcgcatcgcc agccataacc ccacaaggaa tggacatcca gtctggcgcg
     4621 acggtagcgc gggtgatgcc gttttcctgc aaccactgcg caatgttgcg catatgctgt
     4681 tggtgaatca ctgctacggt tgccagttgc tggtcgatat tcaacggggc gaaatgcagt
     4741 tcatcgatat cctggttcag ctcttcttcc agtaaggcgg gcagaatggt cggtatctgc
     4801 ttacgggcga catcaggcag ttcaacctgc cagacgctga tccattcgcc gggaatgtag
     4861 agtcgaatcg catcggtttg cagccattgc tggagctgtt cgttagcaac gtcagaccag
     4921 ataccgtgct ccacatcggg tgtacggcgc tgccaatgga tgggatcagc ggcgcaaagc
     4981 gggaaaaaaa tctcaaggat ggaactcact cactttctcc tgtctgatgc cagagaaccg
     5041 aaaagtgttg tgggcccatg cggacaatta acgagttcat cgtcagttca atctcattca
     5101 cggtgatatc tgaacgcagc cagaagtaat tgctgtccac gctcaggacg gtttttagct
     5161 gttttttagt acgctcatcg acgtcagcaa gtagcggctg tgcaagaaac tgatcgacat
     5221 cttcccagcc cttcgccgga cgttgttgta ataacgcccg cgcctgaacg gggcttaacc
     5281 acgggtcaaa cagcgcctca agaatcacac tttgcgtgac gtctaaagta ttgatgttga
     5341 tttgctggcg gatcatcggc agcgcacaga ccagcggttt cagtttttga taaagcccgg
     5401 cgtccattcc ctgtaccacg cgcatctcac tgatatcagc cagcggttga ttggcggcgt
     5461 agaacggcac cgaacgggcg agatactcgc tgtcttcacg gcccagacgt gtctgcacgc
     5521 tgcggtcctc gtcaataaac tcccacaggc tttcggctat cagttcggcc cgataagcag
     5581 gcacatccag gcgcgagatc agggcaatca actgttgtac cgcaagcgga cgcgacgccg
     5641 ttgtcggctg agcaagggca ttcaggttaa agcaagcctg tgcgtcacgc agggtgaccg
     5701 caatttgccc ctgcggcaga gggaagaaac gagggccgga tgcccacggc tgtgccagat
     5761 gcacgcgctt ttcatttttc aggctcagac tgagcgcgct cagcgccagg ctttccgcac
     5821 tggcgctgta ccacagcgcc tgctggtact cctgctggct gcgcgttcgc ccaagttgtt
     5881 gctgcattcg cccggaaagc gtgatggtta ccagcatcat aaccgccagc aataccagca
     5941 ccacgaccag tgccattccg cgttttggtg gtgaggtgat catgattatt gcggcccgcg
     6001 taacaaccag atgcgttcaa tctcgcccca ttgcggcgaa tgcagggtca tgcgtaccgc
     6061 cacagggatc gcctgtactg acgaccagct ctcctgccag cgcgtgccgt cgtagaactg
     6121 caaacggagc gaatcggccg gaatcaactt ttgcattgtc ggcttcacgc tgcctgcggc
     6181 atcggtcagc ggccaggcta accgttcgag ataaccgtca tgaatgcggt aaccgacggt
     6241 gagcagattg ctgcgcggca gacgcatcaa cgggttaacc acaccgccgc gcacaaaacg
     6301 cattccttca ctctcagacg ccagcacgcc agcgccagcc agtaaagctg gttcacgctg
     6361 gccctgatcg cctcttaccg gacgcggcat catttgggtc agatcgtggg tcagaaaact
     6421 catcgtttgc tgcatgaggt ttagtttttg atcgtgatcg gcgacggcgc tattcacgcg
     6481 cgtgacgccg ttagtcacct gctgcgccat cagtgccagc gaggcaaaaa tggcaattgc
     6541 caccaacatt tccagtaacg tgaaaccagc gcgagtcctt ctcactgttg gcctcccacg
     6601 gcgctaaacc aggcgcgtcg tgactgaatc accgacgaaa agtcttcgtg acggctgact
     6661 tcaatatcca ccgcctggag cagcgcgttg cctgtattca atgggattgt tcgccagtac
     6721 cagcggcttc ctgccatatc gctctcgccc tgatgcctga ccgcccgctg ctcacgggtc
     6781 atcaggtaga gcagcgcagt ctggttttca gctacccagc ccgctaccgt tttttcctca
     6841 agaacgtgct gattactcag cgcaccgctg gcaatctgta acaccgccgt ggcagccagc
     6901 gcaaaaatcg ccagcacgag catcacttcc agcaaggtaa atccgcgctt catggcatcc
     6961 tctcatcaca ttgattgagg gataacgcgc catcgtgtgc cagctttacc gctcaacatg
     7021 cgttttgcgc cgccgagtag aagcgcagcg taaacggcgt ggcgggttca aaaggcgaaa
     7081 aacggatctg cggcgtcttc tttttcgcct ctttttgcaa ctccagttca atatcgtgca
     7141 gcgtcaggcg acgacgttgc agctccagcg catattcctt ctgccagata tcacttccgg
     7201 gttgtaacag catctgcacc tgtttcggca ccgtaacctg tgccgataac cgggtcgcag
     7261 aaacgggcaa ccactgcccc tgacgacgct gcataaactg atagccaggc gggtcgatta
     7321 gcacaccgag tgtctgtcct tcaatcactg ccctgtcctt aaactgcgca aagcgagtca
     7381 gaaaatcctg tgccgctttt ttcgcgggcg gttcagaatc ggtcgcaaac gtctgtacca
     7441 cgcccgcact ggcaaggccg ataaggaaaa tcaccagcat gatttccaga agtgtgaatc
     7501 cgcgttcagg cactgcttac tgaaactcct gcaaattcca gttaccgata tctgcgccag
     7561 cgccttcccc gttttcctga ccatccgccc ccagggtata aacatcaaac agtccttttt
     7621 cacccgggct gagatactga taatcattgc cccacggatc ctttggcagt cgtttgatgt
     7681 atccaccagt acggtagttg cgggagtccg ccatattggc tggctgctgg atcagcgctt
     7741 ccagcccctg ttctgtggtc ggataacgcc cgttatccag tcggtacata tctagtgcgt
     7801 tttccagcgc cacgatatcg ctgatggctt tttgccgatt ggctttctct ttgttgccca
     7861 acaggttagg caccaccaga cttgccagga cgccaagaat aacaatcacc accatcactt
     7921 ccagcagggt aaaacctgcc cgtggtttgt gtgtgcggga taacgaattc atgtgataac
     7981 tccgtaaatt acattccaac catattattc agttgcagca tcggctcgag gatggcgatg
     8041 acaataaaca gcaccacgcc cgccatcatc accaccagcg caggctcaaa cagccccaac
     8101 gccagcccca cctgggtatc aaattcccgt tcctggttaa cagcggcctg ctcaagcatg
     8161 gtttccagtt cgccgctctg ttcgccggaa gcgataatgt acagcatcat cggcgggaac
     8221 aggcgcaact ccgccagcgc ggcgcgcaga ctgcttcctt cgcggacgcg atctgccgcc
     8281 agcagcagtt gttgttcgac atagcgattt gccgacacgg cggcagcggt ctgaatgcct
     8341 tccagtagcg gaacactgct ggcggtgagg atgcttaatg tgcgggaaaa acgcgccgta
     8401 ttcagcccgc gcgcaacacg gcccgtcacg ggcagacgca gcaaggtttt atcccagcgc
     8461 aggcgcatag taggattttt aagtagccat tgccccagca ccagaagcgc cagcaatccc
     8521 gccagccagt aaacgccgct ggcctgtaac gcatcactca tagcgataag cgcacgggtg
     8581 gaggagggta gcgcgtgtcc gagatgatca aactgttcga tgattttcgg caccactgcc
     8641 gtcagcaaaa tagtgaccac gcccgttgcc accaccagca taaccagcgg atagagcatg
     8701 gcctgcaata gacgtgattt caggcgctgt cgctgttcgg tgtaatctgc caggcgattg
     8761 agcaccacgt cgagatgccc ggatttttct ccggcagcga ccatcgaaca aaacagggaa
     8821 tcaaagacgc ggggatgttc gcgcaggctg tccgacaggg tataaccttc ctgaatccgg
     8881 ctgcgcagcg ccattccgag gctcttcaca tgcagttttt cactttgctc actgaccgcc
     8941 tgcaagcagg tttccaacgg cattgctgcc tgcaccagcg ttgccagttg gcgcgtgaac
     9001 agcgccagat ctgccgccgc cacgcgacga tgtgcgtgcc gccgacgctg caacattccc
     9061 cctgccgatg cattcatcct ggcttcaatg tgcacgggga taagctcttt accgcgcaac
     9121 aactggcggg catgacgcgc ggaatccgcc tcaatcatgc ctttggtttt gcgaccatta
     9181 cgctccagcg cctgatagta aaacagtgcc attacgcctc catggttacc cgcagaactt
     9241 catcgagaga ggtttctccg gcgagcactt tctcaatgcc gttgctgcgg atacccgcag
     9301 agtgttgccg gacataacgt tccagctcca gctccccggc ctgacggtgg atcaaatcac
     9361 gcaatgtggc atccaccacg tcagctcatg gatggcagtc cgtccgcgga aacctttgtg
     9421 attacaggcg gggcagccct gcggatggta cagagtgacg gttcgcgcat cggtaatgcc
     9481 cagcaggcgt ttttcttcgt cagtggcagg cgcggcctga cggcagtcgg gacacagcgt
     9541 gcggaccagt cgctgcgcca tcacgcccgt cagactggaa gagagcagga aaggctccac
     9601 gcccatatcc tgcaaacgcg tgatcgcccc caccgccgtg ttggtatgca gcgtggaaag
     9661 gaccaggtgt ccggtaagcg atgcctgaac agcgatttct gcggtttcgg tatcgcggat
     9721 ttcaccgacc atcaccacat ccgggtcctg acgcaaaatc gcgcgcaggc cacgggcgaa
     9781 ggtcatgccg acgcgggtgt taacctgtgt ctgaccgatc ccttcaatca tgtattcgat
     9841 ggggtcttca accgtgagaa tgttacgcga atggttgttc agctcctgca atccggcgta
     9901 cagcgtggtg cttttgccgg aacccgtcgg ccccgtcacc agaaagatgc cgtgcggttt
     9961 gtgtaacagc tggcgcaact gcacggtcag ttgctggcta agccccagac gctccagcgt
    10021 caggcgggcc tggtttttgt ccagcagtcg cagcaccacg cgctcgcccc aggcagaagg
    10081 catggtggag acacgcacgt caatcgcccg gccgcccagc agcagcgcaa tacgtccatc
    10141 ctgcggtacg cgcttttcgg cgatatccag ccgtgccatc accttgatac gcgataccag
    10201 cagcgaggcc agtttgcgcc ccgggcgcag catttcatgt aatgtgccgt caacgcgaaa
    10261 acggatcacc agactctttt caaacgtctc gatgtggata tccgaagcgc cttctttaat
    10321 cgcctctgcc agcatggcgt tgatcagttt gatgatcggc gcatcgtcgt cactttccag
    10381 cagatcttcc gtttctggca gttcttccgc gagagtaaaa aagtcctcag cagaaccgag
    10441 atcttccatc agctggcgag cctcggaaga gtcccgctgc cagaccgcat tcagccgctg
    10501 ttcaaattcg gcctcgtcga tttgccgcag cgtaaagggc gcgttcagcc cccgctgcag
    10561 ctcctgcaaa acagagagcg atagcggatg aacgtggagg atctccagcg acgcttcgca
    10621 ccatgccacc aggctaaacc gacggctgaa actgtagggc agacgcacgg tcttggcggt
    10681 ggtttcctgt gctacaggca ccattaacgc gttctcccgg cattgaggaa cgcgcgaact
    10741 tccggcggta aggcctggtt ttgcgctggc agtaccggct gtgcggtgtg cggcatcagg
    10801 cttaaacctt gctcatcacg atagatctgt tcggcgcgca tatagttata tttgcgctgc
    10861 gacacgccgt ctgccgccat accgtcatgc agaatggtcg ggcggataaa caccatcagg
    10921 ttacgttttt cttttttatc cgccgtcgat ttaaacaggt taccaatcaa tgggatatcg
    10981 cccagcagag gcactttcgc cacgctttct cccgcctgat cgtccatcag accaccaagc
    11041 acaatcagct caccatcgtt agccagcacg gtggttttca gtttgcgctc accaaacacc
    11101 acgtcgaggc tggtctgtcc ttccaccttc gagacttcct gctcaatcac catctgtacc
    11161 gcgttacctt cgttaatctg cggcgtgact ttcagcatga tgccgacttt tttcctttct
    11221 actgtattga aaggattgct gttattggag ccaacggtag agccggttaa taccggaacg
    11281 tcctagccca ccatgaagaa ggcttcctgg ttgtccagcg tagtgatgct cggcgtggag
    11341 agaacgttcg agctggagtc gtttttaacc gcctgcacca gtgccatcca gtcgcctttc
    11401 accacgccaa ccgccgtacc gctaaatcca gaaagaagct gggcgagtgt ggagagatcg
    11461 ccgttggtat ccggattaat ggtggtagcg ccgttttcac tgatcaccgt cgagcctttc
    11521 tgcggtttcg cctgagaaat ggctgccccc agcgtaccga tagggatctg cgtaccatta
    11581 gcaaactgca ttaatccggc atctttcgac gcccactgca cgccgaagtt gatattgcta
    11641 ccttcggcaa cttccacgat caacgcctcg acgtgcacct gagcacggcg aatatccagt
    11701 tgttcaatta cgctttgcag cgactgcatg atgtcctgcg gcgcggttac aatcagggca
    11761 ttactgtgtt tgctggcggc gatggataca acctcacgcc cgctaccgac cgtgccttcc
    11821 gcctcttctt tagccgccgt gagcgtgccg ctgacctgtt tcagcacatc gaccagatct
    11881 tcggctttgc tgtatttgag atagaaaacc tggctgttgc cgctgcgttc catttctgag
    11941 tccagccgac ggatcaggcg gcgcattttg tcccgcgtgg ccgggtcacc actgacaatc
    12001 acactgttgg tgcgttcgtc ggcgacaatt tgagatttca gcgtcgcagg ctggttctcg
    12061 ccgctgtttt tcgtcaggct ttccagcacg cgggcgattt ccgaagccga ggcgttatcc
    12121 agcgggatca cctcttcggt gcgattaccc gcgtgatcca cgcgctggat cacttccgtc
    12181 aggcgctcca caacggaggc gcgtccggtg agcataatca cgttggaggg atcgtaatta
    12241 acaacgttgc ctgagcctgc gctgtcgatc atctggcgca gaatcggtgc cagctcgcgt
    12301 accgacacat tacgtaccgg cactactttg gtgaccattt catcgcccgc gtagttgtcg
    12361 ctgccttcac cgaccagcgg cagcggctcg actttcgcag cgctggattt caccaccttc
    12421 agcacgtcgt tttccatcgg tacgacggca tacccctgtg cttccagcag gttaaggaat
    12481 agctggtaat actggcgttc attgagcggg gtcatggtgc gaatactcac tttcccctgt
    12541 acgcccggcc ccataatgat ggttttatta aggttagcgc cgacggtttc gatgaacgat
    12601 ttcaggtcgg tatctttaaa attagcggtg aaagtggctt cttccgccca gaccggtgaa
    12661 ctgcataatg ccgctgccag caccagcggc agtaaacgct tttttgtttt gaggccagtt
    12721 gtcttcttac gccagaccga caacgtaata tcacgccaaa acacgatgaa tgattctcct
    12781 ggattaaatg cggttagcgc agcgcgatgg aaatgtcgtg gcgcgcaccc ttgcgtaaaa
    12841 ccgtaagttg aatggaatcc attgaaggta actgccgcat cagagcaatc attgctcgtg
    12901 gatcagtgaa atcctgctga tttagcgcaa tggcgatatc gccttccttg aaaccgctgg
    12961 catcgaacag agaacgatct gcccccggct tcactgcata accgacaatt ccctccttac
    13021 gcacaggcgt aagctggata tagttaaaaa ttttctgcgg atctttcgcc agtgcctgac
    13081 gcacggcagt cggtatctca actggcgcac tgacagcagg ttcagcaaca gcttgctttg
    13141 cttcgtcact gacagctttt ttgttggtcg cggcaacggt ggaacgctcc tcttcagcca
    13201 ggctcaggcg ctctattttt ccctgatagc gcagcatcac atggtcgcga ttgatttcct
    13261 caatcaccgc gttgtgcgag ccaagcgttt caccctgcaa atagacctgc tgtttaccgc
    13321 cttcttcaat aaccgcgccg ggtctggcac caaaggcgat cccgcgcgca ccacattaag
    13381 acgcgtttct gccacaggca caggttcggg ttgttttacc ggcgtggcga cgggctgata
    13441 tttgccaaac cagttttgct ggctgattaa ttgcacgtca tttttatcga acgtttttgc
    13501 atccgcacgg ggcggtttat tcgccgatgg ggaaacagcc gtatattccg cagaaaagga
    13561 gaaatagcgc cagagtgaat gcgccacttt tgcagaaata ataagcagca tcagccagaa
    13621 catcccgcgt acaatttt
//
LOCUS       DADMJB010000109        13613 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.109, whole genome shotgun sequence.
ACCESSION   DADMJB010000109 DADMJB010000000
VERSION     DADMJB010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13613)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13613)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13613
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.109"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            414..1616
                     /locus_tag="JN078_002823"
     CDS             414..1616
                     /locus_tag="JN078_002823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline/glycine betaine ABC transporter
                     ATP-binding protein ProV"
                     /protein_id="HAY9041964.1"
                     /translation="MAIKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGV
                     KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELRE
                     VRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS
                     YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTI
                     VFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSA
                     KDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT
                     QQQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCAVPVVDEDQQYVGIISKGMLLRAL
                     DREGVNNG"
     gene            1609..2673
                     /gene="proW"
                     /locus_tag="JN078_002824"
     CDS             1609..2673
                     /gene="proW"
                     /locus_tag="JN078_002824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     permease ProW"
                     /protein_id="HAY9041965.1"
                     /translation="MADQNNPWDTTPAADSAVQSADAWGTPATAPTDGGGADWLTSTP
                     APNVEHFNILDPFHKTLIPLDSWVTEGIDWVVTHFRPVFQGVRVPVDYILNGFQQLLL
                     GMPAPVAIIVFALIAWQISGVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFCI
                     VIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFA
                     LPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPSIMAGVNQTLMLAL
                     SMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGRDSRSR
                     GNRRWYTTGPVGLLTRPFIK"
     gene            2731..3723
                     /gene="proX"
                     /locus_tag="JN078_002825"
     CDS             2731..3723
                     /gene="proX"
                     /locus_tag="JN078_002825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708493.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     substrate-binding protein ProX"
                     /protein_id="HAY9041966.1"
                     /translation="MRHSVLFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQ
                     TLLVSRALEKLGYTVNKPSEVDYNVGYTLLASGDATFTAVNWTPLHDNMYEAAGGDKK
                     FYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKEPKIAKLFDTNGDGKADLTGCNPG
                     WGCEGAINHQLAAYELTNTVTHNQGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNEL
                     KPGKDVVWLQVPFSALPGDKNADTKLPNGANYGFPVSTMHIVANKAWTEKNPAAAKLF
                     AIMQLPVADINAQNAIMHDGKASEGDIQGHVDGWIKAHQQQFDGWVNEALAAQK"
     gene            4015..5199
                     /locus_tag="JN078_002826"
     CDS             4015..5199
                     /locus_tag="JN078_002826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9041967.1"
                     /translation="MTKPNHELSPALIVLMSIATGLAVASNYYAQPLLDTIARNFSLS
                     ASSAGFIVTAAQLGYAAGLLFLVPLGDMFERRRLIVSMTLLAAGGMLITASSQSLAMM
                     ILGTALTGLFSVVAQILVPLAATLASPDKRGKVVGTIMSGLLLGILLARTVAGLLANL
                     GGWRTVFWVASVLMALMALALWRGLPQMKSETHLNYPQLLGSVFSMFISDKILRTRAL
                     LGCLTFANFSILWTSMAFLLAAPPFNYSDGVIGLFGLAGAAGALGARPAGGFADKGKS
                     HHTTTFGLLLLLLSWLAIWFGHTSVLALIIGILVLDLTVQGVHITNQTVIYRIHPDAR
                     NRLTAGYMTSYFIGGAAGSLISASAWQHGGWAGVCLAGATIALVNLLVWWRGFHRQEA
                     AN"
     gene            5323..6060
                     /locus_tag="JN078_002827"
     CDS             5323..6060
                     /locus_tag="JN078_002827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HAY9041968.1"
                     /translation="MESPTPQPALGSATFMEGCKDSLPIVISYIPVAFAFGLNATRLG
                     FSPLESVFFSCIIYAGASQFVITAMLAAGSSLWVAALTVMAMDVRHVLYGPSLRSRII
                     QRLQKSKTALWAFGLTDEVFAAATAKLVRNNRRWSENWMIGIAFSSWSSWVFGTVIGA
                     FSGSGLLQGYPAVEAALGFMLPALFMSFLLASFQRKQSLCVTAALVGALAGVTLFSIP
                     VAILAGIVCGCLTALIQAFWQGAPDEL"
     gene            6050..6385
                     /gene="ygaH"
                     /locus_tag="JN078_002828"
     CDS             6050..6385
                     /gene="ygaH"
                     /locus_tag="JN078_002828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-valine transporter subunit YgaH"
                     /protein_id="HAY9041969.1"
                     /translation="MSYEVLLLGLLVGVANYCFRYLPLRLRVGNARPTKRGAVGILLD
                     TIGIASICALLVVSTAPEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYG
                     LAWKVMAII"
     gene            complement(6404..6505)
                     /locus_tag="JN078_002829"
     CDS             complement(6404..6505)
                     /locus_tag="JN078_002829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9041970.1"
                     /translation="MFNGRKRTIHLGMTSLISADIVTTVTNKVNVLF"
     gene            6476..7006
                     /gene="emrR"
                     /locus_tag="JN078_002830"
     CDS             6476..7006
                     /gene="emrR"
                     /locus_tag="JN078_002830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter EmrAB
                     transcriptional repressor EmrR"
                     /protein_id="HAY9041971.1"
                     /translation="MDSSFTPIEQMLKFRASRHEDFPYQEILLTRLCMHMQSKLLENR
                     NKMLKAQGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIE
                     RRESDNDRRCLHLQLTEKGHEFLREVLPPQHNCLHQLWSALSTTEKDQLEQITRKLLS
                     RLDQMEQDGVVLEAMS"
     gene            7133..8305
                     /gene="emrA"
                     /locus_tag="JN078_002831"
     CDS             7133..8305
                     /gene="emrA"
                     /locus_tag="JN078_002831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter periplasmic
                     adaptor subunit EmrA"
                     /protein_id="HAY9041972.1"
                     /translation="MSANAETQTPQQPVKKSGKRKRLLLLLTLLFIIIAVAIGIYWFL
                     VLRHFEETDDAYVAGNQIQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDARQAFE
                     KAKTALASSVRQTHQLMINSKQLQANIEVQKIALAKAQSDYNRRVPLGNANLIGREEL
                     QHARDAVTSAQAQLDVAIQQYNANQAMILGTKLEDQPAVQQAATEVRNAWLALERTRI
                     VSPMTGYVSRRAVQPGAQISPTTPLMAVVPATNMWVDANFKETQIANMRIGQPVTITT
                     DIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELDQKQLEQYP
                     LRIGLSTLVSVNTTNRDGQVLANKVRSTPVAVSTAREISLAPVNKLIDDIVKANAG"
     gene            8322..9860
                     /gene="emrB"
                     /locus_tag="JN078_002832"
     CDS             8322..9860
                     /gene="emrB"
                     /locus_tag="JN078_002832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter permease
                     subunit EmrB"
                     /protein_id="HAY9041973.1"
                     /translation="MQQQKPLEGAQLVIMTIALSLATFMQVLDSTIANVAIPTIAGNL
                     GSSLSQGTWVITSFGVANAISIPLTGWLAKRVGEVKLFLWSTIAFAIASWECGVSSSL
                     NMLIFFRVIQGIVAGPLIPLSQSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGY
                     ISDNYHWGWIFFINVPIGVAVVLMTLQTLRGRETRTERRRIDAVGLALLVIGIGSLQI
                     MLDRGKELDWFSSQEIIILTVVAVVAICFLIVWELTDDNPIVDLSLFKSRNFTIGCLC
                     ISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGIIPVILSPIIGRFAHKLDMR
                     RLVTFSFIMYAVCFYWRAYTFEPGMDFGASAWPQFIQGFAVACFFMPLTTITLSGLPP
                     ERLAAASSLSNFTRTLAGSIGTSITTTMWTNRESMHHAQLTESVNPFNPNAQAMYSQL
                     EGLGMTQQQASGWIAQQITNQGLIISANEIFWMSAGIFLVLLGLVWFAKPPFGAGGGG
                     GGAH"
     gene            complement(9924..10439)
                     /gene="luxS"
                     /locus_tag="JN078_002833"
     CDS             complement(9924..10439)
                     /gene="luxS"
                     /locus_tag="JN078_002833"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008458247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HAY9041974.1"
                     /translation="MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPN
                     KEVMPERGSHTLEHLFAGFMRNHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVAD
                     AWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
                     LPKEKLQELHI"
     gene            complement(10589..12145)
                     /gene="gshA"
                     /locus_tag="JN078_002834"
     CDS             complement(10589..12145)
                     /gene="gshA"
                     /locus_tag="JN078_002834"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HAY9041975.1"
                     /translation="MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTQATTGH
                     PEALGSALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPL
                     SMPCYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFW
                     QAKCCDISGTDAKEKISAGYFRVIRNYYRFGWVIPYLFGASPAICSSFLQGKPTSLPF
                     EKTECGMYYLPYATSLRLSDLGYTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAK
                     IGIEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDI
                     NPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRVNWNRVILEGRKPGLTLG
                     IGCETAQFPLPQVGKDLFRDLKRVAQTLDSINGGKAYQKVCDELVACFDNPDLTFSAR
                     ILRSMIDTGIGGTGKAFAEAYRNLLREEPLEILREEDFVAEREASERRQQEMETADTE
                     PFAVWLEKHA"
     gene            complement(12218..12646)
                     /locus_tag="JN078_002835"
     CDS             complement(12218..12646)
                     /locus_tag="JN078_002835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HAY9041976.1"
                     /translation="MSEALSLFSLFASSFLSATLLPGNSEVVLVAMLLSGISYPWVLV
                     LTATMGNSLGGLTNVILGRFFPLRKTSRWQEKATGWLKRYGAVTLLLSWMPVVGDLLC
                     LLAGWMRISWGPVIFFLCLGKALRYVAVAAATVQGMMWWH"
     gene            complement(12643..13198)
                     /gene="yqaB"
                     /locus_tag="JN078_002836"
                     /pseudo
     CDS             complement(12643..13198)
                     /gene="yqaB"
                     /locus_tag="JN078_002836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311579.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-1-phosphate/6-phosphogluconate
                     phosphatase"
     gene            complement(13346..13422)
                     /locus_tag="JN078_002837"
     tRNA            complement(13346..13422)
                     /locus_tag="JN078_002837"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13386..13388),aa:Arg,seq:acg)
BASE COUNT         3174 a         3555 c         3467 g         3417 t
ORIGIN      
        1 gctcctctta tgtgatgggg aaagcggttg aaacagaaga tgaagactgg aatttctgag
       61 ggtgttattt tcaaaaatat cactacccgc agcagggaaa taattcccgc caaatagctt
      121 tttatcacgc aaatattctg tagtgatcta cactgagact ctgttgcatt attcgcctga
      181 aactacaata ttcaggcgtt ttttcgctat ctatgacaaa aaatatcaac ttttctcgat
      241 ttgctctcag cccttatatc acgggaaatt ccggcgattt gctcgcatca atattcatgc
      301 cacatttgcc ctcaggggtt gcctcagatt ctcagtatgt tagggtagaa aaaagtgact
      361 atttccattg ggtaatatat cgacataaac aaataaagga atctttctat tgcatggcaa
      421 ttaaattaga aattaaaaat ctttataaaa tatttggcga gcatccacag cgagcgttca
      481 aatatatcga acaaggactt tcgaaagaac aaattctgga aaaaactggg ctatcgcttg
      541 gcgtaaaaga cgccagtctg gccattgaag aaggcgagat atttgtcatc atgggattat
      601 ccggctcggg taaatccaca atggtacgcc ttctcaatcg cctgattgaa cccacccgcg
      661 ggcaagtgct gattgatggt gtggatattg ccaaaatatc cgatgccgaa ctccgtgagg
      721 tgcgcagaaa aaagattgcg atggtcttcc agtcctttgc cttaatgccg catatgaccg
      781 tgctggacaa tactgcgttc ggtatggaat tggccggaat taatgccgaa gaacgccggg
      841 aaaaagccct tgatgcactg cgtcaggtcg ggctggaaaa ttatgcccac agctacccgg
      901 atgaactctc tggcgggatg cgtcaacgtg tgggattagc ccgcgcgtta gcgattaatc
      961 cggatatatt attaatggac gaagccttct cggcgctcga tccattaatt cgcaccgaga
     1021 tgcaggatga gctggtaaaa ttacaggcga aacatcagcg caccattgtc tttatttccc
     1081 acgatctcga tgaagctatg cgtattggcg accgaattgc cattatgcaa aatggtgaag
     1141 tggtacaggt cggcacaccg gatgaaattc tcaataatcc ggcgaatgat tatgtccgta
     1201 ccttcttccg tggcgttgat attagtcagg tattcagtgc gaaagatatt gcccgccgga
     1261 caccgaatgg cttaattcgt aaaacccctg gcttcggccc acgttcggca ctgaaattat
     1321 tgcaggatga agatcgcgaa tatggctacg ttatcgaacg cggtaataag tttgtcggcg
     1381 cagtttccat cgattcgctt aaaaccgcgt taacgcagca gcaaggtctt gatgcggcgc
     1441 tgattgatgc gccgttagca gtcgatgcac aaacgcctct tagcgagttg ctctctcatg
     1501 tcggacaggc accctgtgcg gtacccgtgg tcgacgagga ccaacagtat gtcggcatca
     1561 tttcgaaagg aatgctgctg cgcgctttag atcgtgaggg ggtaaataat ggctgatcaa
     1621 aataatccgt gggataccac gccagcggcg gacagtgccg tgcaatccgc agacgcctgg
     1681 ggtacaccgg cgactgcacc gactgacggc ggtggtgctg actggctgac cagtacgcct
     1741 gcgccaaacg tcgagcattt taatattctc gatccgttcc ataaaacgct gatcccgctc
     1801 gacagttggg tcactgaagg gatcgactgg gttgttaccc atttccgtcc cgtcttccag
     1861 ggcgtgcgcg ttccggttga ttatatcctc aacggtttcc agcaattgct gctgggtatg
     1921 cccgcaccgg tggcgattat cgttttcgct ctcatcgcct ggcagatttc cggggtcgga
     1981 atgggcgtgg cgacgctggt ttcgctgatt gccatcggcg caatcggtgc ctggtcgcag
     2041 gccatggtta ccctggcgct ggtgttaacc gccctgctgt tctgtatcgt cattggtttg
     2101 ccgctgggga tctggctggc gagaagtccg cgagcggcga aaattattcg tccactgctt
     2161 gatgccatgc agaccacgcc agcgtttgtt tatctggtgc caatcgtcat gctatttggt
     2221 atcggtaacg tgccgggcgt ggtggtgacg atcatctttg ctctgccgcc gattatccgt
     2281 ctgaccattc tggggattaa ccaggttccg gcggatctga ttgaagcctc gcgctcattc
     2341 ggtgccagcc cgcgccagat gctgttcaaa gttcagttac cgctggcgat gccgagcatt
     2401 atggcgggcg ttaaccagac gctgatgctg gccctttcta tggtggtcat tgcctcgatg
     2461 attgccgtcg gcgggctggg tcagatggta cttcgcggta tcggtcgtct ggatatgggg
     2521 cttgccaccg ttggcggcgt cgggattgtg atcctcgcca ttatcctcga tcgcctgacg
     2581 caggccgttg ggcgcgactc acgcagtcgc ggcaaccgtc gctggtacac cactggccct
     2641 gttggtctgc tgacccgccc attcattaag taactctgca cttgcccggt gacgccgggc
     2701 attatcaccc tgccaaaaaa aggaataaca atgcgacata gcgtactttt tgcgacagcg
     2761 tttgccacgc ttatctctac acaaactttt gctgccgatc tgccgggcaa aggtattact
     2821 gttaatccag ttcaaagcac catcaccgaa gaaaccttcc agacgctgct ggtcagccgt
     2881 gcgctggaga aattaggcta taccgtcaac aaacccagcg aagtagatta caacgttggc
     2941 tacaccttgc ttgcttccgg cgatgcaacc ttcaccgccg tgaactggac gccactgcat
     3001 gacaacatgt acgaagctgc cggtggcgat aagaaatttt atcgtgaagg ggtatttgtt
     3061 aacggcgcgg cacagggtta cctgatcgat aagaaaaccg ccgaccagta caaaatcacc
     3121 aacatcgcac aactgaaaga gccgaagatc gccaaactgt tcgataccaa cggcgacggt
     3181 aaagcggatt taaccggttg taatcctggc tggggctgcg aaggtgcgat caaccaccag
     3241 cttgccgcgt atgaactgac caacaccgtg acgcataatc aggggaacta cgcagcgatg
     3301 atggccgaca ccatcagtcg ctacaaagag ggcaaaccgg tgttttatta cacctggacg
     3361 ccgtactggg tgagtaatga gctgaagcca gggaaagatg tggtctggtt gcaggtgccg
     3421 ttctccgcac tgccgggcga taaaaatgcc gataccaaac tgccgaatgg cgcgaattac
     3481 ggcttcccgg tcagcaccat gcatatcgtt gccaacaaag cctggaccga gaaaaatccg
     3541 gcggcagcca aactgtttgc cattatgcag ttgccagtgg ccgatattaa cgcccagaac
     3601 gccattatgc atgacggcaa agcctcagaa ggcgatattc agggccacgt tgatggctgg
     3661 atcaaagccc accagcagca gttcgatggc tgggtgaatg aggcgctggc agcgcagaag
     3721 taatttttat tcaggcggat aaggcgtttt tgccttatcc gccgctctgt acacaatgcc
     3781 tgatgcgacg ctgacgcgtc ttatcatgcc tacaaaatac actcattccg tatggcggat
     3841 aaggcgtttt cgccgcatcc gccgttctgt gcacaatgcc tgatgcgacg ctggcgcgtc
     3901 ttatcatgcc tacaaaccac atcgcacatt tcaacaagct atctttcatc ccatattcat
     3961 caacatccgc tattattgat ttccagctta atcatcacct gatgaacaaa aataatgact
     4021 aaacctaatc atgagcttag cccggcgctg atcgtgctga tgtctatcgc caccggtctg
     4081 gcggtagcca gtaactatta cgcccagcca ttgctcgaca ccatcgcgcg taacttttcc
     4141 ctttccgcca gttcggcagg ctttattgtt accgccgcgc aattgggcta tgcagcaggt
     4201 ctgctgtttc ttgttcccct cggtgatatg tttgaacgcc gccgcctgat tgtctcgatg
     4261 accttactgg cggcaggcgg catgttaatc actgccagca gtcagtcgct ggcgatgatg
     4321 atcctcggta cggcattaac cggtttattc tctgtcgtgg cacaaattct ggttccgctg
     4381 gcagcgacgc tggcttcacc ggacaaacgc ggcaaagtgg ttggcactat tatgagcggt
     4441 ctgctgttgg ggatcttact cgcacggacc gttgccggat tgctggcgaa tctcggcggc
     4501 tggcgcaccg tcttttgggt tgcctcggtg ttaatggcac tgatggcgct ggcattatgg
     4561 cgtggtctgc cacaaatgaa atcagaaacc cacctcaact acccacagtt gttaggttcc
     4621 gttttcagca tgtttatcag cgataagatc ctgcgcaccc gcgcattgct gggctgcctg
     4681 acctttgcca acttcagcat tctctggacc tcaatggcct ttttgcttgc cgctccacct
     4741 tttaactaca gcgatggtgt cattggtctg tttggacttg cgggagctgc cggagcgttg
     4801 ggcgctcgtc cggcgggcgg ttttgccgat aagggtaaat cgcaccacac cacaactttc
     4861 ggtctgctgc tgctattact ttcatggctg gcgatctggt ttggtcacac ttccgtactg
     4921 gcgctgatta tcggcatcct ggtgctggat ctcaccgtac agggcgtgca tatcactaac
     4981 cagacggtaa tttatcgaat acaccctgat gcgcgtaatc gcctgaccgc aggttacatg
     5041 accagctact ttattggcgg tgccgccggt tcgctaattt cagcctcagc ctggcaacat
     5101 ggcggttggg ctggcgtttg tctggctggc gcgacgattg ccctggttaa cttactggtc
     5161 tggtggcgag gttttcatcg tcaggaagcc gcaaattaag caatcagcaa ccgttttcgt
     5221 ggctttacac ttataagggt gttaagaagc ccatcagtct gataaggtta agatattcat
     5281 tcagtctatt tataatatta acaatcgtta agcgtacact ctatggaaag ccctactcca
     5341 cagcctgctc ttggttcggc gaccttcatg gaaggatgca aagacagttt accgattgtt
     5401 attagttata ttccggtggc ctttgcgttc ggtctgaatg cgacccgtct gggattctct
     5461 cctctcgaaa gcgttttttt ctcctgcatc atttatgcag gcgcgagcca gttcgtcatt
     5521 accgcgatgc tggcagccgg gagtagtttg tgggttgctg cactgaccgt catggcaatg
     5581 gatgttcgcc atgtgttgta tggcccgtca ctgcgtagcc gtattattca gcgtctgcaa
     5641 aaatcgaaaa ccgccctgtg ggcatttggc ctgacggatg aggtttttgc cgccgcaacc
     5701 gcaaaactgg tacgcaataa tcgccgctgg agcgagaact ggatgatcgg cattgccttc
     5761 agttcatggt catcgtgggt atttggtacg gtaatagggg cattctccgg cagcggcttg
     5821 ctgcaaggtt atcccgccgt tgaagctgca ttaggtttta tgcttccggc actctttatg
     5881 agtttcctgc tcgcctcttt ccagcgcaaa caatctcttt gcgttaccgc agcgttagtt
     5941 ggtgcccttg caggcgtaac gctattttct attcccgtcg ccattctggc aggcattgtc
     6001 tgtggctgcc tcactgcgtt aatccaggca ttctggcaag gagcgcccga tgagctatga
     6061 ggttctgctg cttgggttac tggttggcgt ggcgaattat tgcttccgct atttgccgct
     6121 gcgcctgcgt gtgggtaatg cccgcccaac caaacgtggc gcggtaggta ttttgctcga
     6181 caccattggc atcgcctcga tatgcgctct gctggttgtc tctaccgcac cagaagtgat
     6241 gcacgataca cgccgtttcg tgcccacgct ggtcggcttc gcggtactgg gtgccagttt
     6301 ctataaaaca cgcagcatta tcatcccaac actgcttagt gcgctggcct atgggctcgc
     6361 ctggaaagtg atggcgatta tataacccac aagaatcatt tttctaaaac aatacattta
     6421 ctttatttgt tactgtcgtt actatatcgg ctgaaattaa tgaggtcata cccaaatgga
     6481 tagttcgttt acgcccattg aacaaatgct aaaatttcgc gccagccgcc acgaagattt
     6541 tccttatcag gagatccttc tgactcgtct ttgcatgcac atgcaaagca agctgctgga
     6601 gaaccgcaat aaaatgctga aggctcaggg gattaacgag acgttgttta tggcgttgat
     6661 tacgctggag tctcaggaaa accacagtat tcagccttct gaattaagtt gtgctcttgg
     6721 atcatcccgt accaacgcga cgcgtattgc cgatgaactg gaaaaacgcg gttggatcga
     6781 acgtcgtgaa agcgataacg atcgccgctg cctgcatctg caattaacgg aaaaaggtca
     6841 cgagtttttg cgcgaggttt taccaccgca gcataactgc ctgcatcaac tctggtccgc
     6901 gctcagcaca acagaaaaag atcagctcga gcaaatcacc cgcaaattgc tctcccgtct
     6961 cgaccagatg gaacaagacg gtgtggttct cgaagcgatg agctaacgcg tcatctcgct
     7021 caaaaatcca gatttataaa agaaaaaatg accggccagc atcgcaacat gctggccttt
     7081 ttggcaagca ggtcggctca gccgatgagt taagaagatc gtggagaaca atatgagcgc
     7141 aaatgcggag actcaaaccc cgcagcaacc ggtaaagaag agcggcaaac gtaagcgtct
     7201 gctcctcctt ctcaccttgc tctttataat tattgccgta gcgataggga tttattggtt
     7261 tttggtactg cgtcatttcg aagaaaccga tgacgcatac gtggcaggga atcagattca
     7321 aattatgtct caggtgtctg gcagcgtgac gaaagtctgg gccgataaca ccgattttgt
     7381 aaaagaaggc gatgttctgg tcactctcga cccgacagat gctcgccagg cgtttgaaaa
     7441 agccaaaact gcactggctt ccagcgttcg ccaaacccac cagctgatga ttaacagcaa
     7501 acagttacag gcgaatattg aggtgcaaaa aatcgccctc gcgaaagcac aaagcgacta
     7561 caaccgccgt gtgccgctgg gcaatgccaa cctgattggt cgcgaagagc tgcaacacgc
     7621 ccgcgacgcc gtcaccagtg cccaggcgca actggacgtc gctattcaac aatacaatgc
     7681 caatcaggcg atgattctgg ggactaaact ggaagatcag cctgccgtgc aacaggctgc
     7741 caccgaagta cgtaacgcct ggctggcgct ggagcgtacc cgtattgtca gtccgatgac
     7801 cggttatgtc tcccgccgcg cggtacagcc tggggcgcaa attagcccaa cgacgccgct
     7861 gatggcggtc gttccagcca ccaatatgtg ggtggatgcc aactttaaag agacgcagat
     7921 tgccaatatg cgtatcggtc agccggtcac tatcaccacg gatatttacg gcgatgatgt
     7981 gaaatacacc ggtaaagtgg ttggtctgga tatgggcaca ggtagcgcat tctcactgct
     8041 tccggcgcaa aatgcgaccg gtaactggat caaagtcgtt cagcgtctac ctgtgcgtat
     8101 cgaactggac cagaaacagc tggagcaata cccgctgcgc attggtttgt ccacgctggt
     8161 gagcgtcaat accactaacc gtgacggtca ggtactggca aataaagtac gttcaacacc
     8221 ggtcgcggta agtaccgcgc gtgaaatcag cctggcacct gtcaataaac tgatcgacga
     8281 tatcgtaaaa gctaacgctg gctaatccag aggtgcgtgt gatgcaacag caaaaaccgc
     8341 tggaaggcgc gcaactggtc attatgacga ttgcgctgtc actggcgaca ttcatgcagg
     8401 tgctggactc caccattgct aacgtggcga tccccactat cgccgggaat ctgggctcat
     8461 cgctcagcca gggaacgtgg gtaatcactt ctttcggggt ggcgaatgcc atctcgatcc
     8521 cgcttaccgg ctggctggca aagcgcgtcg gggaagtgaa actgttcctt tggtccacca
     8581 tcgcctttgc tattgcgtcg tgggagtgtg gtgtctccag cagcctgaat atgctgatct
     8641 tcttccgtgt gattcagggg attgtcgctg ggccgttgat cccactttcg caaagtcttt
     8701 tgctgaataa ttacccgcca gccaaacgct caatcgcgct ggcgttgtgg tcgatgacgg
     8761 tgattgtcgc gccaatttgc ggcccaatcc tcggcggtta tatcagcgat aattaccact
     8821 ggggctggat attcttcatc aacgtgccaa ttggcgtggc ggtggtgttg atgacactgc
     8881 aaaccctgcg cggacgcgaa acccgcaccg aacggcggcg gattgatgcc gtggggctgg
     8941 cactgctggt tattggtatc ggtagcctgc agattatgct cgaccgcggt aaagagctgg
     9001 actggttttc atcacaggaa attatcattc ttaccgtggt ggcggtggtg gctatctgct
     9061 tcctgattgt ctgggagctg accgacgata acccgatagt cgatctgtcg ttgtttaagt
     9121 cgcgcaactt caccatcggc tgcttgtgta tcagcctcgc gtatatgctc tacttcggcg
     9181 cgattgttct gctgccgcag ttgttgcagg aggtctacgg ttacacggcg acctgggcag
     9241 gtttggcctc tgcgccggta gggattattc cggtgatcct gtcgccgatt atcggccgct
     9301 tcgcgcataa actggatatg cggcggctgg taaccttcag ctttattatg tatgccgtct
     9361 gcttctactg gcgtgcctat acctttgaac caggtatgga ttttggcgcg tcggcctggc
     9421 cgcagtttat ccaggggttt gcggtggcct gcttctttat gccgctgacc accattacgc
     9481 tgtctggttt gccaccggaa cgactggcgg cggcatcgag cctctctaac tttacgcgaa
     9541 cgctggcggg gtctatcggc acgtcgataa ccacgaccat gtggaccaac cgcgagtcga
     9601 tgcaccatgc gcagttgact gagtcggtaa acccgttcaa cccgaatgcc caggcgatgt
     9661 acagtcaact ggaagggctt gggatgacgc aacagcaggc atcaggctgg attgcccagc
     9721 agatcactaa tcaggggctg attatttccg ccaatgagat cttctggatg tcagccggga
     9781 tattcctcgt cctgctgggg ctggtgtggt ttgctaaacc gccctttggc gcaggtggcg
     9841 gcggaggtgg tgcgcactaa gtacaactaa gccagttcat ttgaactggc ttttttcaat
     9901 taattgtgaa gatagtttac tgactaaatg tgcagttcct gcaacttctc tttcggcagt
     9961 gccagttctt cgttgctgtt gatgcgtacg tcacgttcca gaatgctacg cgcaatatcc
    10021 tgcgcttcct gcaacgagtg catctggtaa gtgccacact ggtagacgtt cagctccggg
    10081 atctgattct gatcctgcac tttcagcacg tcttccattg ccgctttcca ggcatcagca
    10141 acacgctgct catctggcgt accaatcaga ctcatataaa aaccggtgcg gcagcccatt
    10201 ggcgagatat cgataatctc tacaccatta ccgttaagat ggttacgcat aaaaccagca
    10261 aacaggtgct ccagagtatg gctccctctt tctggcatca cttctttgtt cggcacgcag
    10321 aagcgcagat cgaacacggt gattgcgtcg ccatgcgggg tgttcattgt tttcgccacc
    10381 cgaactgcag gcgcttccat ccgggtatga tcgactgtga agctatctaa caacggcatt
    10441 tagccacctc cggtaatttt tttaaaaatt ttctgaactc tttcttccca ggcgagtctg
    10501 agtatatgaa agacgcgcat ttgttatcat catccctgaa ttcagagatg aaattttggc
    10561 cactcacgag tggccttttt cttttctgtc aggcgtgttt ttccagccac accgcaaacg
    10621 gttcggtatc agcggtttcc atttcctgct gacggcgttc agatgcctcg cgctcggcta
    10681 caaaatcctc ttcgcgcaga atttccaacg gctcttcacg cagcagatta cggtaggctt
    10741 ctgcaaacgc tttgcctgtt ccgccaatac cagtatcaat catagacctt aagatacggg
    10801 cagagaaagt cagatcggga ttatcgaagc aggcgaccag ttcatcacac actttctgat
    10861 acgctttgcc gccgttaatg ctatccaacg tttgcgcgac gcgtttcaga tcgcggaaca
    10921 gatctttacc cacctgcggt aacgggaact gcgcggtttc gcagccgata cccagcgtca
    10981 ggcccggttt gcgaccttcg aggatcaccc ggttccagtt aacgcgtgta caggcaagtt
    11041 cgctactgct catttccggt gcatcagcca gcgcacacca gaccataaac aggtcgagga
    11101 atcgcacctg ctgttcatct acaccaatcg gcgagaacgg gttgatgtcc agcgaacgca
    11161 cttcaatata ttcaatgccg ccacgtaaca gcgcatcaga aggtgactcg ccgctgcggg
    11221 taacgcgttt tggacgaatc ggcgcataca gttcgttttc aatctgcagc acgttgctat
    11281 tgatttgcag cctcttaccg tctttctcaa taccaatctt cgcgtactct tccgatggcg
    11341 ttttgattgc ctgtttaagg cccgctacgt actcgtaaag atcgttgaag gtaataccaa
    11401 gattgctttg cgatttattg gtatagccga gatcgctcaa acgaagagag gtcgcatacg
    11461 gcaggtaata cataccgcac tcggttttct caaacggcag cgacgttggt tttccttgca
    11521 ggaaagaaga acaaatcgcc ggagatgcac caaacagata aggaatgacc caaccgaaac
    11581 gatagtaatt gcggataacg cggaaatagc ccgcagaaat tttctctttg gcatcagtgc
    11641 ccgagatatc acagcacttc gcttgccaga atgccattgg caaagagaaa ttgtagtgca
    11701 cgccggaaat ggtttgcatc agcgcgccgt agcgattttt cagcccttca cgatacagcg
    11761 ttttaaagcg tccggtgtta gaagtgccgt actgtgccag ttcgatgtcc tgaccttctg
    11821 cgatgtagca tggcatactt aacggccaca tccgctcatc gcccatattg cgcgccgtat
    11881 aacgatgcag atcgcgcata aaggtcaaca tatgttcaat atcaccatcc actggtgtaa
    11941 tgaattccag caatgcttcc gcaaaatcgg tagtaatcca tttgtgcgtc agtgcggaac
    12001 ctaatgcttc aggatgacct gttgttgcct gtgtgccatc agcattaaca cgcaaagttt
    12061 cgcgctccag cccacgctgt atccccttta acgcctgagg atgtttttcc agccaggcca
    12121 gcgcctgtga tacgtccggg atcaaattga cctcccgcct gtcaaaatcg ttttaattag
    12181 cataactgta atggtgacca tatgtgcagg cctacaatta gtgccaccac atcatgccct
    12241 gaacggtagc tgctgcaact gcaacatagc gtaaagcttt accaaggcac aaaaaaaaga
    12301 ttaccggtcc ccacgagatg cgcatccatc ccgctaacag acacagtaaa tcgccaacca
    12361 cgggcatcca gcttaataat agcgtgactg caccatagcg tttcagccag ccagtagctt
    12421 tctcttgcca gcgcgatgtt ttacgcaatg gaaagaaacg cccaaggata acgttagtta
    12481 accctccaag gctattaccc attgttgctg ttaaaactaa aacccaggga taactgatcc
    12541 cggaaagcaa cattgccacc agcacgactt cggagttgcc gggtaatagt gtagcgctga
    12601 gaaaactact ggcaaacaac gagaaaagcg ataacgcttc actcacagca agcgaacatc
    12661 cacggcgtcc atgcctgctg cacgggccgc ctgaataccg aaatcggcat cttcaaagac
    12721 cacacactgc gtcggttgca cgcccatacg ctgcgcgcac aacaaaaatg tgtctggcgc
    12781 gggtttatgg tgtttgacgt gatcagcagc gacgacggcg tcaaaataac ggcgtaatcc
    12841 caggtgcgcc agcaatgcct cagcgatggc gctttcactc cccgttccta cagccattgg
    12901 gcgacgacca tgccaacttt tcaccacttc aacaagagga agcggctcga cactatccag
    12961 cagcatactt cttactgctt ctgttttttc acgcgctaac gcatgcgggg cgagatcggc
    13021 ctgattcagc tcaataattg cctgagcaat acgccaggtg ggcgatccat taagcgcaat
    13081 cattgcctga acatcgtact gaagaccgta gtgccctaat acttcgcgcc acgctttacg
    13141 gtgcgtaggc tccgtatcca ggaatatcaa aaattaaacc tgcataacgc tcgtacatgg
    13201 tcttctcgca agtcgaaaaa tatgacgcta ctttagcgta attgcttgat tttgtcgctg
    13261 atggcgaagg agaagaaaat tcaggaaatg gataaagtag ttatttagaa atgagatatt
    13321 tttgaaggaa atttttggga gaagatggtg catccgggag gattcgaacc tccgaccgct
    13381 cggttcgtag ccgagtactc tatccagctg agctacggat gcatcgggaa aatttatttt
    13441 actgctgata ttgatatcgc tactaaagcc atatcaagta agagatggtg catccgggag
    13501 gattactcgc cttgcggctc gcccttcggg ccgttgctaa agcaacgtta tcatccctgg
    13561 tgcctgcggt taattccgct acctcttcga taccttcatt gctgaagatt tcg
//
LOCUS       DADMJB010000110        13585 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.110, whole genome shotgun sequence.
ACCESSION   DADMJB010000110 DADMJB010000000
VERSION     DADMJB010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13585)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13585)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13585
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.110"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            68..344
                     /locus_tag="JN078_002838"
                     /pseudo
     CDS             68..344
                     /locus_tag="JN078_002838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001254202.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            515..862
                     /locus_tag="JN078_002839"
     CDS             515..862
                     /locus_tag="JN078_002839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YidH family protein"
                     /protein_id="HAY9041977.1"
                     /translation="MKISRLGEAPDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAP
                     DFATPVIRELLALLLCLFSGGLAMYGYLRWLRNEKAMRLKEDLPYTNSLLIISLILMV
                     VAVIVMGLVLYAG"
     gene            852..1214
                     /locus_tag="JN078_002840"
     CDS             852..1214
                     /locus_tag="JN078_002840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF202 domain-containing protein"
                     /protein_id="HAY9041978.1"
                     /translation="MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIKHNWH
                     QAGMLFWISIGILAIVALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAI
                     LFAVTHIHQLIVFIERVA"
     gene            1211..1708
                     /locus_tag="JN078_002841"
     CDS             1211..1708
                     /locus_tag="JN078_002841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HAY9041979.1"
                     /translation="MTGSQVIDAEEDRHKLVVEYKDALQPADFYHNFKQRGIRSVQLI
                     PYLEFDDRGDLTAASVTAELWGKFLIALFECWVRADISRISIELFDATLQKWCGGENP
                     QPRRDCQACDWHRLCPHARQETPDSVLCAGYQAFYSYSAPHMRVMRDLIKQHRSPMEL
                     MTMLR"
     gene            complement(1716..2900)
                     /gene="emrD"
                     /locus_tag="JN078_002842"
     CDS             complement(1716..2900)
                     /gene="emrD"
                     /locus_tag="JN078_002842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418129.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter EmrD"
                     /protein_id="HAY9041980.1"
                     /translation="MKRQRNVNLLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGA
                     VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAA
                     SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN
                     WRACYLFLLVLCVGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIG
                     GLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ
                     SVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFLFLAGT
                     AGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVLCWLPLATRMSHQGQ
                     PV"
     gene            complement(3319..3408)
                     /gene="tisB"
                     /locus_tag="JN078_002843"
     CDS             complement(3319..3408)
                     /gene="tisB"
                     /locus_tag="JN078_002843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin TisB"
                     /protein_id="HAY9041981.1"
                     /translation="MSLVDIAILILKLIVAALQLLDAVLKYLK"
     gene            3973..4071
                     /gene="ivbL"
                     /locus_tag="JN078_002844"
     CDS             3973..4071
                     /gene="ivbL"
                     /locus_tag="JN078_002844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ilvB operon leader peptide IvbL"
                     /protein_id="HAY9041982.1"
                     /translation="MTTSMFNAKLLPTALSAAVVVVRVVVVVGNAP"
     gene            4177..5865
                     /gene="ilvB"
                     /locus_tag="JN078_002845"
     CDS             4177..5865
                     /gene="ilvB"
                     /locus_tag="JN078_002845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HAY9041983.1"
                     /translation="MASSGTTSTRKRFTGAEFIVHFLEQQGIKIVTGIPGGSILPVYD
                     ALSQSTQIRHILARHEQGAGFIAQGMARTDGKPAVCMACSGPGATNLVTAIADARLDS
                     IPLICITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRHIEELPQVMSDAFRIAQS
                     GRPGPVWIDIPKDVQTAVFEIETQPAMAEKAAAPAFSEESIRDAAAMINAAKRPVLYL
                     GGGVINAPARVRELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGVRSTNYILQEA
                     DLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQL
                     IPQVEAQPRAEWHQLVADLQREFPCPIPKACDPLSHYGLINAVAACVDDNAIITTDVG
                     QHQMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPDRKVLCFSGDGSLMMN
                     IQEMATASENQLDVKIILMNNEALGLVHQQQSLFYEQGVFAATYPGKINFMQIAAGFG
                     LETCDLNNEADPQAALQEIINRPGPALIHVRIDAEEKVYPMVPPGAANTEMVGE"
     gene            5869..6159
                     /locus_tag="JN078_002846"
     CDS             5869..6159
                     /locus_tag="JN078_002846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase isozyme 1 small subunit"
                     /protein_id="HAY9041984.1"
                     /translation="MQNTTHNNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPI
                     QDSDKSHIWLLVNDDQRLEQMISQIDKLEDVVKVQRNQSDPTMFNKIAVFFQ"
     gene            6233..6823
                     /gene="uhpA"
                     /locus_tag="JN078_002847"
     CDS             6233..6823
                     /gene="uhpA"
                     /locus_tag="JN078_002847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator UhpA"
                     /protein_id="HAY9041985.1"
                     /translation="MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP
                     GRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKR
                     CSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
                     ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW"
     gene            6823..8325
                     /gene="uhpB"
                     /locus_tag="JN078_002848"
     CDS             6823..8325
                     /gene="uhpB"
                     /locus_tag="JN078_002848"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418124.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal transduction histidine-protein
                     kinase/phosphatase UhpB"
                     /protein_id="HAY9041986.1"
                     /translation="MKTLFSRLITVIACFFIFSAAWFCLWSISLHLVERPDMAVLLFP
                     FGLRLGLMLQCPRGYWPVLLGAEWLLIYWLTQAVGLTHFPLLMIGSLLTLLPVALISR
                     YRHQRDWRTLLLQGAALTAAALLQSLPWLWHGKESWNALLLTLTGGLTLAPICLVFWH
                     YLANNTWLPLGPSLVSQPINWRGRHLVWYLLLFVISLWLQLGLPDELSRFTPFCLALP
                     IIALAWHYGWQGALIATLMNAIALIASQTWRDHPVDLLLSLLVQSLTGLLLGAGIQRL
                     RELNQSLQKELARNQHLAERLLETEESVRRDVARELHDDIGQTITAIRTQAGIVQRLA
                     ADNASVKQSGQLIEQLSLGVYDAVRRLLGRLRPRQLDDLTLEQAIRSLMREMELEGRG
                     IVSHLEWRIDESALSENQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQDERLMLVIE
                     DDGSGLPPGSGQQGFGLTGMRERVTALGGTLHISCLHGTRVSVSLPQRYV"
     gene            8335..9654
                     /gene="uhpC"
                     /locus_tag="JN078_002849"
     CDS             8335..9654
                     /gene="uhpC"
                     /locus_tag="JN078_002849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418123.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter family glucose-6-phosphate
                     receptor UhpC"
                     /protein_id="HAY9041987.1"
                     /translation="MLPFLKAPADAPLMTDKYEIDARYRYWRRHILLTIWLGYALFYF
                     TRKSFNAAVPEILANGVLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL
                     IATGIINILFGFSTSLWAFAVLWVLNAFFQGWGSPVCARLLTAWYSRTERGGWWALWN
                     TAHNVGGALIPIVMAAAALHYGWRAGMMIAGCMAIVVGIFLCWRLRDRPQALGLPAVG
                     EWRHDALEIAQQQEGAGLTRKEILTKYVLLNPYIWLLSFCYVLVYVVRAAINDWGNLY
                     MSETLGVDLVTANTAVTMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVG
                     SLWLMPFASYVMQATCFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLG
                     ASLAGWPLAKVLDTWHWSGFFVVISIAAGISALLLLPFLNAQTPREA"
     gene            9792..11183
                     /gene="uhpT"
                     /locus_tag="JN078_002850"
     CDS             9792..11183
                     /gene="uhpT"
                     /locus_tag="JN078_002850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexose-6-phosphate:phosphate antiporter"
                     /protein_id="HAY9041988.1"
                     /translation="MLAFLNQVRKPTLDLPLEVRRKMWFKPFMQSYLVVFIGYLTMYL
                     IRKNFNIAQNDMISTYGLSMTQLGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFML
                     ILSAICMLGFSASMGSGSVSLFLMIAFYALSGFFQSTGGSCSYSTITKWTPRRKRGTF
                     LGFWNISHNLGGAGAAGVALFGANYLFDGHVIGMFIFPSIIALIVGFIGLRYGSDSPE
                     SYGLGKAEELFGEEISEEDKETESTDMTKWQIFVEYVLKNKVIWLLCFANIFLYVVRI
                     GIDQWSTVYAFQELKLSKAVAIQGFTLFEAGALVGTLLWGWLSDLANGRRGLVACIAL
                     ALIIATLGVYQHASNEYIYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGAADGIKG
                     TFAYLIGDSFAKLGLGMIADGTPVFGLTGWAGTFAALDIAAIGCICLMAIVAVMEERK
                     IRREKKIQQLTVA"
     gene            complement(11228..12994)
                     /gene="adeD"
                     /locus_tag="JN078_002851"
     CDS             complement(11228..12994)
                     /gene="adeD"
                     /locus_tag="JN078_002851"
                     /EC_number="3.5.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine deaminase"
                     /protein_id="HAY9041989.1"
                     /translation="MNNSINHKFHHISRAEYQELLAVSRGDAVADYIIDNVSILDLIN
                     GGEISGPIVIKGRYIAGVGAEYADAPALQRIDARGATAVPGFIDAHLHIESSMMTPVT
                     FETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCD
                     VNGASFTLEQMLAWRDHPQVTGLAEMMDYPGVISGQNALLDKLDAFRHLTLDGHCPGL
                     GGKELNAYITAGIENCHESYQLEEGRRKLQLGMSLMIREGSAARNLNALAPLINEFNS
                     PQCMLCTDDRNPWEIAHEGHIDALIRRLIEQHNVPLHVAYRVASWSTARHFGLNHLDL
                     LAPGKQADIVLLSDARKVTVQQVLVKGEPIDAQTLQAEESARLAQSAPPYGNTIARQP
                     VSASDFALQFTPGKRYRVIDVIHNELITHSHSSVYSENGFDRDDVCFIAVLERYGQRL
                     APACGLLGGFGLNEGALAATVSHDSHNIVVIGRSAEEMALAVYQVIQDGGGLCVVRNG
                     QVQSHLPLPIAGLMSTDTAQSLAEQIDALKAAARECGPLPDEPFIQMAFLSLPVIPAL
                     KLTSQGLFDGEKFVFTTLEVTE"
     gene            13169..>13585
                     /locus_tag="JN078_002852"
     CDS             13169..>13585
                     /locus_tag="JN078_002852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418120.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HAY9041990.1"
                     /translation="MNNDNTDYVSNESGMLSRLFKLPQHGTTVRTELIAGMTTFLTMV
                     YIVFVNPQILGAAQMDPKVVFVTTCLIAGIGSIAMGIFANLPVALAPAMGLNAFFAFV
                     VVGAMGISWQTGMGAIFWGAVGLFLLTLFRIRYWMIS"
BASE COUNT         3025 a         3529 c         3793 g         3238 t
ORIGIN      
        1 gccggggcgc aatgtccggg caaaatcagg tttaaaccgt tcgatactgg atcagggctg
       61 gtatgaaatg cgccgccagc ttgagtacaa gcagctctgg agtggcggtc aggtgcttgc
      121 tgttccgcca gcgttgcgcg tgctgtggtc atacagcgaa agaaaatcgc ctgtcacaaa
      181 gtaaattcag atgccaggta tgtggatata cagcgaacgc cgatgtaaat ggcgctcgta
      241 acattttagc ggcggggcac gccgttcttg cctgtggaga gatggtgcag tcaggccgcc
      301 cgttgaagca ggaacccacc gaaatgattc aggcgacagc ctgaacgtag cagggatcct
      361 cgtccttcag ggcgtggagg atgtcaattt gcgctatgat acccatctga cctccttgta
      421 gcggatggca aaagcatatc aggaaacggg cggacgaaat tcttaaaaaa aaccgctaaa
      481 gatagagcgt tagtgaaatt gcaaaggagc aacaatgaaa atttcccgcc ttggagaagc
      541 gcccgattac cgcttctcgc tggctaatga gcgtactttt ctggcgtgga tccgtaccgc
      601 actaggattt ctggcggcgg gggttgggct tgatcaactt gcgccagatt tcgccacgcc
      661 cgtcattcgt gaactgctgg cgttgttgtt gtgtctgttt tccggcgggt tagcaatgta
      721 tggctacctg cgctggttac gcaatgaaaa agcgatgcgt ctgaaagagg acctgcccta
      781 caccaacagc ttattaatca ttagcttaat attgatggtc gtggcggtga tcgttatggg
      841 actggtgttg tatgccggat agccgcaaag ccagacgcat tgccgaccca ggactgcagc
      901 cggagcgcac atcactggcg tggtttcgta ccatgctggg ctacggcgcg ttgatggcgt
      961 tggctatcaa acacaactgg caccaggcgg gcatgttatt ctggatttcg attggcattc
     1021 tcgccatcgt ggcgctgatc ctctggcact acacccgtaa tcgcaattta atggatgtca
     1081 cgaatagcga tttttcccaa tttcacgtag tccgtgacaa atttttgatc tccctcgcgg
     1141 tgttatctct cgcaatactg tttgctgtaa cgcatataca tcaacttatc gtatttattg
     1201 agagagtcgc atgacaggaa gtcaggtcat tgatgctgaa gaggacaggc ataaactggt
     1261 tgtagagtac aaggatgctc tgcaacctgc cgatttttat cacaatttca aacagcgggg
     1321 catccgctcc gtacagctca ttccctatct tgaatttgat gaccggggcg atctgacggc
     1381 cgcttcggtg acagcagagc tgtgggggaa atttttaatt gccctgttcg agtgttgggt
     1441 gcgggcagat atcagtcgta tctcgattga gctttttgac gccaccttac aaaaatggtg
     1501 tggcggcgaa aacccgcaac cgcgccgtga ctgccaggcg tgcgactggc atcgcctgtg
     1561 cccgcacgct cggcaggaga cgccagacag cgtgctttgt gcgggctatc aggcgtttta
     1621 ttcttactcc gcaccgcata tgcgggtgat gcgtgatctg ataaagcagc atcgttctcc
     1681 catggagctg atgacgatgc tgcggtgacg tgcgcttaaa cgggctgccc ctgatgcgac
     1741 atccgcgtcg ccagcggcag ccagcacagc acgatcaaca atcccattaa ggtcatcaat
     1801 aaccccaggc taccctgacc ggtttgcggc aacatcgcag agagcgacgc cagcacgccg
     1861 gaaccaatgt tttgcagacc gccgaccagc gcgccagccg tgcccgccag gaagaggaac
     1921 ggctccatcg cgccgctggt cgccagcgga aacagcatcc cggcaccgaa aaagaacagc
     1981 gcggcgggaa cgagcagcgt ccagacattc atcacgccaa accagtcggg gatccacatc
     2041 agcaagccag ccagcaggca gcagataacc gactgccaca ttaacgtgga gaagcgttta
     2101 ttgggacgtc cggcaaacca tgcgccaaaa aacgctgccg gaatcggcag aataaacaaa
     2161 atactgaccg tcatactgct cagccctaat accgcgccca tcagcacgcc ggagcaggct
     2221 tcaaaggcgg caatcccggc cagaccgcca atcagcatca gcaaataaca gttaaaaccg
     2281 ctgttaccga aaagcgtttt ataactggta agcaggcgcg tgcgcggtgc atcgaccgga
     2341 cgcgtttccg gcatccagcg ggccatactg aaggtcacac caacacaaag aaccaacaaa
     2401 aagagataac aggcgcgcca gttccacatc gtatccagca gaccgccgat tagcggtgcg
     2461 agcaacggac tgacgagaat ccccatgttt aacaggctgt tagcatggcg caactgtgtc
     2521 cgttcatata aatctcgcgg caaagtacgc gccattacgc cgccaacgcc ggtgcccatc
     2581 ccctgcatcg cgctggcggc aatcaatacc gtcaaactgg aggtcgtgac cgcgaccagc
     2641 gttgccagca taaaaatgga cattccgacg aggatcaccg gtcggcgacc cacacggtcg
     2701 gaaatcgggc cataaaacag ctgtgagaca ccgtaagtca gcagataagc gcccattacg
     2761 ctctgcaccg ccccttcacg gacgttgaga tcgcgcgcca tatcggcaat agctggaata
     2821 taaatggttt gcgccatctg accgacggcc acgagtaata ccaacatcaa taacaaattg
     2881 acgtttcttt gccttttcat tatcacggat gcttttataa aaataattag aataagtcac
     2941 tacgcattcc cataaatgcg ggagaggaat ctatcacatt gatgaatgtt agccagatat
     3001 acgccaggaa tggggaattg tttagcggca gaatatgtaa acaaaagcgg caataaatgt
     3061 tgccgggagg gattacgtgc gaactgtaac cctctcccca aaggggcgag ggggaaacca
     3121 ccgttccctt tcagaaaatg agctaaacat tgcacgggac ggtcccctcg cccctttggg
     3181 gagagggcta gggtgagggg cacaggcagc gcaggtgcaa acattctgct ggtagaagaa
     3241 gcccccaact ccaacccgca cgctaaatat aaaaggggag cggttacccg ctcccctttg
     3301 gtgcgacttg aatctgaatt acttcaggta tttcagaaca gcatcaagca gttgcagtgc
     3361 tgcaacaatg agtttgagga taagaatggc gatatccacc aggctcatac gcgtctcctg
     3421 tggttcagga gcactgccag ctgacgtacc tttccgctgc ctgttgccag ctgttgtgca
     3481 cgcggtatct caaggagaaa cgttgtgctt gttgacataa cacagtgtgc tcacgcgggg
     3541 ttaaggcgct gacggcacca cccgtttcag ccaggactta gtgcgccggg taacgatgcg
     3601 gcccccgcat aatacattgc gtacagtgat attatagaag tttactgtat aaataaacag
     3661 tgatatttgg acaaaacgca aactgtgatc gatactcaac tatgccctaa atacgtcaaa
     3721 attcgtgccg aaattgcgcg ttctgcgcgg aacacgtata ctttcagtgt tgacataata
     3781 cagtgtgctt tgcggttacc agctgcaggc ggctgatgaa acctcgctcc ggcggggttt
     3841 tttgttacct gcaattcagt acaaaacgtg atcagcccct caattttccc ttgctgaaaa
     3901 attttccatt gtctcccctg taaagctgtg cttgtataaa tattgttaaa cacaaaacca
     3961 acaaggtccc caatgactac ttccatgttc aacgcaaaac tactaccaac tgcgctatcc
     4021 gccgcagtgg tcgtcgtgcg tgtggtggtg gtcgtcggca atgcgccgta gggactggaa
     4081 caacacacga ttccaaaacc ccgccggcgc aaaccgggcg gggtttttcg tttaagcacc
     4141 tcccggaaag tcggcccaga agaaaaggac tggagcatgg caagttcggg cacaacatcg
     4201 acgcgtaagc gctttaccgg cgcagaattt atcgttcatt tcctggaaca gcagggcatt
     4261 aagattgtga cgggcattcc gggcggttct atcctgcctg tttacgatgc cttaagccaa
     4321 agcacgcaaa tccgccatat tctggcccgt catgaacagg gcgcgggatt tatcgctcag
     4381 gggatggcgc gcaccgacgg taaaccggcg gtctgtatgg cctgtagcgg accgggtgcg
     4441 actaacctgg tgaccgccat tgccgatgcg cggctggact ccatcccgct gatttgcatc
     4501 accggtcagg ttcccgcctc gatgatcggc accgacgcct tccaggaagt ggacacctac
     4561 ggcatctcta tccccatcac caaacacaac tatctggtca gacatatcga agaactcccg
     4621 caggtcatga gcgatgcctt ccgcattgcg caatcaggcc gcccaggccc ggtgtggata
     4681 gacattccta aggatgtgca aacggcagtt tttgagattg aaacacagcc cgctatggca
     4741 gaaaaagccg ccgcccccgc ctttagtgaa gaaagcattc gtgacgcagc ggcgatgatt
     4801 aacgctgcca aacgcccggt gctttatctg ggcggcggtg tgatcaatgc gcccgcacgg
     4861 gtgcgtgaac tggcggagaa agcgcaactg cctaccacca tgactttaat ggcgctgggc
     4921 atgttgccaa aagcgcatcc gttgtcgctg ggtatgctgg ggatgcacgg cgtgcgcagc
     4981 accaactata ttttgcagga ggcggatttg ttgatagtgc tcggtgcgcg ttttgatgac
     5041 cgggcgattg gcaaaaccga gcagttctgt ccgaatgcca aaattattca tgtcgatatc
     5101 gatcgcgcag agctgggtaa aatcaagcag ccgcatgtgg cgattcaggc ggatgttgat
     5161 gacgtgctgg cgcaattgat cccgcaggtg gaagcgcaac cgcgtgcaga gtggcaccag
     5221 ttggtagcgg atttgcagcg cgaattcccg tgtccaatcc cgaaagcgtg cgatccatta
     5281 agccattacg gcctgatcaa cgccgttgcc gcctgtgtcg atgacaatgc gattatcacc
     5341 accgatgtgg gtcagcatca gatgtggacc gcgcaagctt atccgctcaa tcgcccacgc
     5401 cagtggctga cctccggtgg gctgggcacg atgggttttg gcctgcctgc ggcgattggc
     5461 gcggcgctgg cgaacccgga tcgcaaagtg ttgtgtttct ccggcgacgg cagcctgatg
     5521 atgaatattc aggagatggc gaccgccagt gaaaatcagc tggatgtcaa aatcattctg
     5581 atgaacaacg aagcgctggg gctggtgcat cagcaacaga gtctgttcta cgagcaaggc
     5641 gtttttgccg ccacctatcc gggcaaaatc aactttatgc agattgccgc cggattcggc
     5701 ctcgaaacct gtgatttgaa taacgaagcc gatccgcagg ctgcattgca ggaaatcatc
     5761 aatcgccctg gcccggcgct gatccatgtg cgcattgatg ccgaagaaaa agtttacccg
     5821 atggtgccgc caggtgcggc gaatactgaa atggtggggg aataagccat gcaaaacaca
     5881 actcataaca acgtaattct ggagctcacc gttcgcaacc atccgggcgt aatgacccac
     5941 gtttgtggcc tttttgcccg ccgcgctttt aacgttgaag gcattctttg tctgccgatt
     6001 caggacagcg acaaaagcca tatctggcta ctggtcaatg acgaccagcg tctggagcag
     6061 atgataagcc aaatcgataa gctggaagat gttgtgaaag tgcagcgtaa tcagtccgat
     6121 ccgacgatgt ttaacaagat cgcggtgttt tttcagtaac cgctcaaggc ttgaacaaca
     6181 tcgcgcttat cgttaaggta agcgcgtttt ttttacccgc caggacaaga ccatgatcac
     6241 cgttgccctt atagacgatc acctcatcgt ccgctccggc tttgcgcagc tgctggggct
     6301 ggaacctgat ttgcaggtag ttgccgagtt tggttcgggg cgcgaggcgc tggcggggct
     6361 gccggggcgc ggtgtgcagg tgtgtatttg cgatatctcc atgcccgata tctccggtct
     6421 ggagctgcta agccagctgc cgaaaggtat ggcgacgatt atgctctccg ttcacgacag
     6481 tcctgcgctg gttgagcagg cgcttaacgc gggggcacgc ggctttcttt ccaaacgctg
     6541 tagcccggat gaactcattg ctgcggtgca tacggttgcc acgggcggct gttatctgac
     6601 gccggatatt gccattaaac tggcatccgg tcgtcaggac ccgctaacca aacgtgaacg
     6661 ccaggtggcg gaaaaactgg cgcaaggaat ggcggtgaaa gagattgccg ccgaactggg
     6721 cttgtcaccg aaaacggtac acgtccatcg cgccaatctg atggaaaaac tgggcgtcag
     6781 taacgacgta gagctggcgc gccgcatgtt tgatggctgg tgatgaagac gttgttctcc
     6841 cgcttaatta ccgttattgc ctgctttttt atcttctctg ccgcatggtt ttgcctgtgg
     6901 agtatcagcc tgcatctggt tgagcgccct gatatggcgg tgctgttatt tccgtttggt
     6961 ctgcgtctgg ggctaatgct gcaatgcccg cgcggatact ggccggtgct gctgggcgcg
     7021 gagtggctgc tgatttactg gctaacgcag gcggtcggtt taacccattt tccgttattg
     7081 atgatcggta gtttactgac gttactgccc gtagcgctga tctcgcgcta tcgccatcag
     7141 cgtgactggc gcaccttgct gttacagggg gcggcgttaa cggcggcggc gttgttgcag
     7201 tcgctgccct ggctttggca cggcaaagag tcgtggaatg cgctgttgct gactttaact
     7261 ggcggcctga cgctggcccc gatatgtctg gtgttctggc actatctcgc caataacacc
     7321 tggctgccgc tcggcccgtc actggtttct cagccaatca actggcgcgg gcgacatctg
     7381 gtctggtact tgctgctgtt tgttatcagt ctctggctcc agttgggatt gccggacgaa
     7441 ctgtcgcgct ttacgccatt ctgtctggcg ctgccgatta tcgcgctggc ctggcactat
     7501 ggttggcaag gggcgctgat tgcgacgttg atgaacgcca tcgcgctgat cgccagtcaa
     7561 acctggcgcg atcatccggt ggatttattg ctctcgctgc tggtgcaaag tctgacaggg
     7621 ttgttgcttg gcgctggcat ccagcggttg cgtgaactta accagtcgct gcaaaaggaa
     7681 ctggcgcgca atcagcatct ggctgaacgg ttgctggaaa ccgaagagag cgtgcgccgt
     7741 gatgtggcgc gtgagctgca tgatgatatc ggtcagacca tcactgctat tcgtactcag
     7801 gcgggcattg ttcagcggct ggcggcagat aacgccagcg tgaagcagag cgggcagctc
     7861 atcgaacaac tatcgctggg cgtttacgac gcggtgcgcc gtttgttggg tcggttacgt
     7921 ccgcgccagt tggatgatct caccctggag caggccatcc gctcactgat gcgggaaatg
     7981 gagctggaag ggcgcggtat tgtcagccat ctcgaatggc gaatcgatga atcagcgtta
     8041 agcgaaaacc agcgcgtgac gctgtttcgt gtctgccagg aagggctgaa caacattgtg
     8101 aaacatgctg atgccagcgc ggtcaccctg caaggctggc agcaggatga acggttgatg
     8161 ctggttattg aagacgatgg cagcggtttg ccgccgggtt ccgggcaaca aggttttggc
     8221 ctcaccggaa tgcgcgagcg cgtaacggcg ctgggtggca cattacacat ttcctgtctg
     8281 cacggcacgc gtgtcagcgt ttctctacct caacgctatg tctaaggttt gatgatgttg
     8341 ccgtttctga aagcgcctgc cgatgcgcca ttaatgactg ataaatatga aattgatgcc
     8401 cgctatcgct actggcgtcg gcatattctg ctgaccatct ggctgggtta cgcgctgttt
     8461 tacttcacgc ggaaaagttt taacgccgcc gtaccagaaa tccttgctaa cggcgtgctc
     8521 agccgtagcg atatcggcct gttagcgacc ctgttttaca ttacctatgg cgtgtcgaag
     8581 tttgtctccg gcattgtcag cgatcgctca aatgcccgtt attttatggg gatagggctt
     8641 atcgccacgg gcattatcaa cattctgttt ggcttctcga cgtcgctatg ggcgtttgcc
     8701 gtactctggg tgctgaacgc ctttttccag ggctggggtt caccggtgtg tgcgcgtctg
     8761 ttaacggcct ggtattcacg taccgagcgc ggtggttggt gggcattatg gaacacggcg
     8821 cataacgtcg gcggcgcact cattcccatt gtgatggcag cggctgcact acattacggc
     8881 tggcgtgccg ggatgatgat tgctggttgt atggcgatcg tcgtgggaat ttttctctgc
     8941 tggcggctgc gcgatcgccc gcaggcgtta ggtttaccgg cggtcggtga atggcgacac
     9001 gacgcgctgg agatagctca acaacaagaa ggggcagggc tgacgcgtaa agagatcctc
     9061 accaaatatg tgttgctgaa tccgtatatc tggctgcttt cgttttgcta tgtgctggtc
     9121 tatgtggtcc gggcggcgat caacgactgg ggcaatttgt atatgtccga gacgctgggc
     9181 gtcgatctgg tcacggcgaa tacggcagtg acgatgtttg aactgggtgg atttatcggt
     9241 gcgctggtag cgggttgggg ctcggacaaa ttgtttaacg gcaaccgagg gccgatgaat
     9301 ttgattttcg ccgccggaat tttgctttca gtcggctccc tgtggctgat gccatttgcc
     9361 agctacgtga tgcaggcaac ctgcttcttc accattggtt tttttgtctt tggcccacag
     9421 atgttaatcg gtatggcggc ggcagagtgt tcccacaaag aggcggcagg ggcggcgacg
     9481 gggtttgtcg gcttgtttgc ttatctgggg gcgtcgcttg ctggttggcc gctggcgaaa
     9541 gtactcgata cctggcactg gagcggattt tttgtggtta tctctatcgc cgccgggatt
     9601 tccgcactgc tgttactgcc ctttttgaac gcccagacac cgcgcgaagc gtgatgcatc
     9661 tcaccttttc acttcatatc cggcaaaact aagaaatttt ccaggttttg cctggacgct
     9721 atctcaggcc tgatttgctg ctgattttta caatgcatgc ctcacgcagg tattcatttc
     9781 aggagtaacc catgctggct ttcctaaacc aggttcgcaa gccgaccctg gaccttccgc
     9841 tcgaagtgcg gcgcaaaatg tggttcaaac cgttcatgca atcctacctg gtggtcttta
     9901 tcggctacct gacgatgtac ctgattcgca agaactttaa catcgcgcag aacgatatga
     9961 tttcgaccta cgggttgagc atgacgcagc tggggatgat cggcctgggt ttctccatca
    10021 cttatggcgt gggtaaaacg ttggtttcat actacgccga cggcaaaaac accaaacaat
    10081 tcctgccgtt catgctgatc ctgtctgcca tttgtatgct gggcttcagt gccagtatgg
    10141 gcagcggctc ggttagcctg ttcctgatga ttgccttcta cgccttaagc ggctttttcc
    10201 agagtaccgg cggttcgtgc agttactcca ccatcaccaa atggacgccg cgtcgtaaac
    10261 gcgggacatt cctcggtttc tggaatattt ctcacaacct tggcggtgca ggcgcagcag
    10321 gtgtggcgct gttcggggca aattacctgt tcgatggcca tgtcatcggc atgtttatct
    10381 tcccgtcgat tatcgcgctg attgtcggtt ttatcggcct gcgttacggc agcgactccc
    10441 cagaatctta tggcctcggc aaagctgaag aactgttcgg cgaggagatc agcgaagagg
    10501 acaaagagac agaatctacc gatatgacca agtggcagat ctttgttgag tatgtgctga
    10561 aaaacaaagt gatctggctg ctgtgcttcg ccaacatttt cctctatgtg gtacgtattg
    10621 gtatcgacca gtggtcaacc gtatacgcgt tccaggaact gaaactctct aaagcggtgg
    10681 cgattcaggg ctttacgctg tttgaagctg gtgcgctggt cggtacgctg ctgtggggct
    10741 ggctctctga cctggcgaac ggtcgccgtg gcctggtggc ctgcatcgcg ctggcgctga
    10801 ttatcgccac gctcggtgtg tatcaacatg ccagcaacga atatatctat ctggcttctc
    10861 tctttgcgtt gggtttcctg gtctttggcc cgcaattgtt gattggtgtg gctgctgttg
    10921 gctttgtacc taaaaaagcg attggcgctg ccgatggtat taaaggcacc tttgcttacc
    10981 tgattggtga cagctttgcc aagttaggtc tgggaatgat tgccgatggg acgccggtat
    11041 tcggccttac cggctgggca ggcaccttcg ccgcacttga tatcgccgcg attggttgta
    11101 tctgcctgat ggcgatagtg gcggtgatgg aagaacgcaa aatccgccgc gagaaaaaaa
    11161 ttcagcagtt gacagtggca taaacgtaac tggtgacttt tgcccggcat gacgccgggc
    11221 ttttttatta ttccgtgact tccagcgtag tgaagacaaa cttctcgcca tcaaatagcc
    11281 cctgactggt tagtttgagc gcggggatca ctggcagaga aagaaacgcc atctgaataa
    11341 acggctcatc gggtaacgga ccgcattcac gggcggcggc tttcaaggcg tcaatttgtt
    11401 ccgccagcga ctgcgccgtg tcggtgctca tcaggccggc aatgggcaac ggcagatgac
    11461 tttggacctg gccgttacgt accacgcaca gcccgccgcc atcctgaatc acctgataga
    11521 ccgccagcgc catctcttcg gcactgcgac cgatcaccac aatattatgg ctgtcatggc
    11581 tgaccgtcgc agccagcgca ccttcattca gtccaaagcc gccaagcaaa ccacaagccg
    11641 gagccagccg ttgcccgtaa cgctcaagta cggcaataaa gcacacatca tcgcgatcaa
    11701 aaccattttc gctgtagacg ctggagtggg agtgcgtaat caattcgtta tggatgacgt
    11761 caatgacccg atagcgtttt ccgggcgtaa attgcagggc aaagtcgctg gcggaaactg
    11821 gctggcgggc aatggtgttg ccatatggcg gagcggattg tgccagtctc gccgactctt
    11881 ccgcctgtaa ggtttgcgca tcaatcggct cgcctttcac cagtacctgc tgcaccgtga
    11941 ccttacgcgc atcgctcaac aggacgatat cggcctgctt gccgggtgcc agtaagtcga
    12001 ggtgattcag accaaagtgg cgcgccgtcg accagctggc gacgcgatat gccacatgca
    12061 gcggcacatt gtgttgttcg atcaggcggc gaattaaggc atcgatgtgt ccttcatggg
    12121 cgatctccca cgggttacgg tcatcggtac agagcatgca ttgcgggctg ttaaattcgt
    12181 tgatcaacgg tgccagcgcg ttgagattgc gggcagcgga cccttcgcgg atcatcaacg
    12241 acatgccgag ttgtaatttc cggcgtcctt cttccagctg ataactttcg tggcagtttt
    12301 caatacccgc agtaatatag gcgttaagtt ctttaccacc caaacccggg cagtgaccgt
    12361 ccagcgtcag gtggcgaaat gcatccagtt tatcgagcag cgcattctgc ccgctaatta
    12421 cgccagggta gtccatcatt tctgcaaggc cggtaacctg cggatggtcc cgccaggcga
    12481 gcatctgttc aagggtaaaa ctggcaccgt taacatcgca gccttccagg gcgggtacgc
    12541 aagagctgac ctgtaagtac tggttttgcc ttgcctgttc ggcacagcgg gcaaaccagg
    12601 cgaatccggc ttctcccatc acgttgacga tttcatgagg gtcgcaaata acggtcgtca
    12661 ggccgcgcgg cagggtagcg gtttcaaagg tgaccggcgt catcatgctg gattcaatat
    12721 gcaggtgagc atcaataaac cctggcaccg ccgttgcgcc gcgagcatca atccgctgca
    12781 aagccggagc atcagcgtat tctgcgccaa caccggcaat gtaacgtcct ttaatcacaa
    12841 ttgggccgga aatttctccg ccattgatca ggtcgagaat agagacatta tcaataatat
    12901 aatcggcaac agcgtcgcca cgggaaacgg ctaacaattc ctggtattca gcccggctaa
    12961 tgtgatgaaa tttatggtta atggaattat tcatattttt ctcattttga ttttatcaat
    13021 ttgattatta tttatcataa agaaacgtcg cgagattatt aaagaatatc tattaatgtg
    13081 caattgaaat gtgataatta tcactgaacc gttgttgtca tttgttttac aaaagcaagg
    13141 gattaaatct cctccaatgg acaaaaaaat gaataatgac aataccgatt acgtgagtaa
    13201 tgaatcaggg atgctttcgc gattatttaa actacctcag catgggacca ccgtccgcac
    13261 agaattgatt gcggggatga ccactttttt aaccatggtg tacatcgttt ttgtgaaccc
    13321 gcaaatcctc ggcgcggcac aaatggaccc gaaagtggtg tttgttacca cctgtttgat
    13381 tgccggtatc ggcagtattg cgatggggat atttgctaac ttacccgtgg cgctggctcc
    13441 ggcaatgggg ctgaacgcct tctttgcctt cgtggtcgtg ggggcgatgg gcatctcctg
    13501 gcagaccggg atgggcgcaa tattctgggg cgcagttgga ctatttttgc tcacgctgtt
    13561 tcgtatccgg tactggatga tctcc
//
LOCUS       DADMJB010000111        13584 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.111, whole genome shotgun sequence.
ACCESSION   DADMJB010000111 DADMJB010000000
VERSION     DADMJB010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13584)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13584)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13584
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.111"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(241..1614)
                     /gene="cobA"
                     /locus_tag="JN078_002853"
     CDS             complement(241..1614)
                     /gene="cobA"
                     /locus_tag="JN078_002853"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HAY9041991.1"
                     /translation="MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLDAGARLTVNALA
                     FIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDTLNQRVSEAAEARRIFCNV
                     VDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLESLLPLHLGQVAKYAGQ
                     LRGRVKQQFTTMSERRRFWEKLFVNDRLAQSLANNDQKAITETTEQLINEPLDHRGEV
                     VLVGAGPGDAGLLTLKGLQQIQQADVVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHC
                     VPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAAS
                     GCSAYSGIPLTHRDYAQSVRLITGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQQ
                     KLIEHGMPGEMPVAIVENGTAVTQRVIDGTLTQLGELAQQMNSPSLIIIGRVVGLRDK
                     LNWFSNH"
     gene            complement(1633..2439)
                     /gene="nirC"
                     /locus_tag="JN078_002854"
     CDS             complement(1633..2439)
                     /gene="nirC"
                     /locus_tag="JN078_002854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026212.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite transporter NirC"
                     /protein_id="HAY9041992.1"
                     /translation="MFTDTINKCAANAARIARLSANNPLGFWVSSAMAGAYVGLGIIL
                     IFTLGNLLDPSVRPLVMGATFGIALTLVIIAGSELFTGHTMFLTFGVKAGSISHGQMW
                     AILPQTWLGNLVGSVFVAMLYSWGGGSLLPVDTSIVHSVALAKTTAPAMVLFFKGALC
                     NWLVCLAIWMALRTEGAAKFIAIWWCLLAFIASGYEHSIANMTLFALSWFGNHSEAYT
                     LAGIGHNLLWVTLGNTLSGAVFMGLGYWYATPKSNRPVADKFNQTETAAG"
     gene            complement(2566..2892)
                     /gene="nirD"
                     /locus_tag="JN078_002855"
     CDS             complement(2566..2892)
                     /gene="nirD"
                     /locus_tag="JN078_002855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite reductase small subunit NirD"
                     /protein_id="HAY9041993.1"
                     /translation="MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISN
                     IDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDG
                     VVQLRG"
     gene            complement(2889..5432)
                     /locus_tag="JN078_002856"
     CDS             complement(2889..5432)
                     /locus_tag="JN078_002856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite reductase large subunit"
                     /protein_id="HAY9041994.1"
                     /translation="MSKVRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAY
                     DRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFY
                     DKLIMATGSYPWIPPIKGSDTQDCFVYRTIEDLNAIESCARRSKRGAVVGGGLLGLEA
                     AGALKNLGIETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGV
                     EARKTMRFADGSELEVDFIVFSTGIRPRDKLATQCGLDVAPRGGIVINDSCQTSDPDI
                     YAIGECASWNNRIFGLVAPGYKMAQVAVDHILGSENAFEGADLSAKLKLLGVDVGGIG
                     DAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIE
                     LPENPDSLILPAHSGSGKPSIGVDKLPDSAQICSCFDVTKGDLIAAINKGCHTVAALK
                     AETKAGTGCGGCIPLVTQVLNAELAKQGIEVNNNLCEHFAYSRQELFHLIRVEGIKTF
                     EELLAKHGKGYGCEVCKPTVGSLLASCWNEYILKPEHTPLQDSNDNFLANIQKDGTYS
                     VIPRSPGGEITPEGLMAVGRIAREFNLYTKITGSQRLAMFGAQKDDLPEIWRQLIEAG
                     FETGHAYAKALRMAKTCVGSTWCRYGVGDSVGLGVELENRYKGIRTPHKMKFGVSGCT
                     RECSEAQGKDVGIIATEKGWNLYVCGNGGMKPRHADLLAADIDRETLIKYLDRFMMFY
                     IRTADKLTRTAPWLENLEGGIDYLKAVIIDDKLGLNAHLEEEMARLREAVVCEWTETV
                     NTPSAQTRFKHFINSDKRDPNVQMVPEREQHRPATPYERIPVTLVEDNA"
     gene            complement(5694..6875)
                     /gene="tsgA"
                     /locus_tag="JN078_002857"
     CDS             complement(5694..6875)
                     /gene="tsgA"
                     /locus_tag="JN078_002857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter TsgA"
                     /protein_id="HAY9041995.1"
                     /translation="MTNSNRIKLTWISFLSYALTGALVIVTGMVMGNIADYFNLPVSS
                     MSNTFTFLNAGILISIFLNAWLMEIVPLKTQLRFGFLLMVLAVAGLMFSHSLALFSTA
                     MFILGVVSGITMSIGTFLITQMYEGRQRGSRLLFTDSFFSMAGMIFPMIAAFLLARSI
                     EWYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCY
                     ILGQLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTV
                     LAGLAAILMYVFNTGTPAHMAWSILALGFFSSAIYTTIITLGSQQTKVPSPKLVNFVL
                     TCGTIGTMLTFVVTGPIVEHSGPQAALLTANGLYAVVFVMCFLLGFVSRHRQHNTLTS
                     H"
     gene            7146..7718
                     /gene="ppiA"
                     /locus_tag="JN078_002858"
                     /gene_synonym="rotA"
     CDS             7146..7718
                     /gene="ppiA"
                     /locus_tag="JN078_002858"
                     /gene_synonym="rotA"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000920493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase A"
                     /protein_id="HAY9041996.1"
                     /translation="MFKSTLAAMAAVFALSALSPAAMAAKGAPHVLLTTSAGNIELEL
                     DKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEAD
                     NGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVAD
                     KISQVPTHDVGPYQNVPSKPVVILSAKVLP"
     gene            7823..7990
                     /locus_tag="JN078_002859"
     CDS             7823..7990
                     /locus_tag="JN078_002859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfG family protein"
                     /protein_id="HAY9041997.1"
                     /translation="MKKLTDKQKSRLWELQRNRNFQASRRLEGVEMPLVTLTAAEALA
                     RLVELRRHYER"
     gene            7980..8582
                     /locus_tag="JN078_002860"
     CDS             7980..8582
                     /locus_tag="JN078_002860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative adenosine monophosphate-protein
                     transferase Fic"
                     /protein_id="HAY9041998.1"
                     /translation="MSDKFGEGRDPYLYPGLDIMRNRLNIRQQQRLEQAAYEMTALRA
                     ATIELGPLVRGLPHLRTIHRQLYQDIFDWAGQLREVDIYQGDTPFCHFAYIEKEGNAL
                     MQDLEEEGYLVGLEKTKFVERLAHYYCEINVLHPFRVGSGLAQRIFFEQLAIHAGYQL
                     SWQGIEKEAWNQANQSGAMGDLTALQMIFSKVVSEAGESE"
     gene            8614..9177
                     /gene="pabA"
                     /locus_tag="JN078_002861"
     CDS             8614..9177
                     /gene="pabA"
                     /locus_tag="JN078_002861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component 2"
                     /protein_id="HAY9041999.1"
                     /translation="MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKP
                     QKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMHG
                     KTSPITHNGEGVFRGLANPLTVTRYHSLVVEPGSLPACFDVTAWSETREIMGIRHRQW
                     DLEGVQFHPESILSEQGHQLLANFLHL"
     gene            9263..10483
                     /gene="argD/dapC"
                     /locus_tag="JN078_002862"
     CDS             9263..10483
                     /gene="argD/dapC"
                     /locus_tag="JN078_002862"
                     /EC_number="2.6.1.11"
                     /EC_number="2.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     acetylornithine/succinyldiaminopimelate transaminase"
                     /protein_id="HAY9042000.1"
                     /translation="MAIEQTAITRATFDEVILPIYAPAEFIPVKGQGSRIWDQQGKEY
                     VDFAGGIAVTALGHCHPALVNALKTQGETLWHISNVFTNEPALRLGRKLIEATFAERV
                     VFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDG
                     FGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVTASTPEFLQGLRELCDQ
                     HQALLVFDEVQCGMGRTGDLFAYMYYGVTPDILTSAKALGGGFPISAMLTTAEIASAF
                     HPGSHGSTYGGNPLACAVAGAAFDIINTPEVLEGIQAKRQRFVDHLQKIDQQYDVFSD
                     IRGMGLLIGAELKPHYKGRARDFLYAGAEVGVMVLNAGPDVMRLAPSLVVEDADIDEG
                     MQRFAHAVAKVVGA"
     gene            complement(10550..12640)
                     /locus_tag="JN078_002863"
     CDS             complement(10550..12640)
                     /locus_tag="JN078_002863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312236.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042001.1"
                     /translation="MWRRLIYHPDINYALRQTLVLCLPVAVGLMLGELRFGLLFSLVP
                     ACCNIAGLDTPHKRFFKRLIIGASLFATCSLLTQLLLAKDVPLPFLLTGLTLVLGVTA
                     ELGPLHAKLLPASLLAAIFTLSLAGYMPVWEPLLIYALGTLWYGLFNWFWFWIWREQP
                     LRESLSLLYRELADYCEAKYSLLTQHTDPEKALPPLLVRQQKAVDLITQCYQQMHMLS
                     AQNNTDYKRMLRIFQEALDLQEHISVSLHQPEEVQKLVERSHAEEVIRWNAQTVAARL
                     RVLADDILYHRLPTRFTMEKQIGALEKIARQHPDNPVGQFCYWHFSRIARVLRTQKPL
                     YARDLLADKQRRMPLLPALKSYLSLKSPALRNAGRLSVMLSVASLMGTALHLPKSYWI
                     LMTVLLVTQNGYGATRLRIVNRSVGTVVGLIIAGVALHFKIPEGYTLTLMLITTLASY
                     LILRKNYGWATVGFTITAVYTLQLLWLNGEQYILPRLIDTIIGCLIAFGGTVWLWPQW
                     QSGLLRKNAHDALEAYQEAIRLILSEDPQPTPLAWQRMRVNQAHNTLYNSLNQAMQEP
                     AFNSHYLADMKLWVTHSQFIVEHINAMTTLAREHRALPPELAQEYLQSCEIAIQRCQQ
                     RLEYDEPGSSGDANIMDAPEMQPHEGAAGTLEQHLQRVIGHLNTMHTISSMAWRQRPH
                     HGIWLSRKLRDSKA"
     gene            complement(12691..13323)
                     /gene="crp"
                     /locus_tag="JN078_002864"
     CDS             complement(12691..13323)
                     /gene="crp"
                     /locus_tag="JN078_002864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cAMP-activated global transcriptional regulator
                     CRP"
                     /protein_id="HAY9042002.1"
                     /translation="MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIV
                     KGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKK
                     FRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
                     PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR"
BASE COUNT         3289 a         3494 c         3556 g         3245 t
ORIGIN      
        1 tccctatgta ttatatatta attaatattc attgattata tgaatataag cagactgctc
       61 gttaagaacg atacaggaat atttaattgg cgtcagtgag cgaatgactt aattttgtaa
      121 gtcgctgtaa cggtgaatat aacccattag cagataatat ttattaaggg gttatgtttt
      181 atttgctgaa tatataaaaa gagtcattaa gaaggccaga attctctggc ccgggttaaa
      241 ttaatggttg gagaaccagt tcagtttatc gcgcaggcca acaacccgac caataataat
      301 tagcgatgga ctgttcattt gctgagcaag ttcaccgagt tgcgtgagcg taccgtcaat
      361 cacgcgctgc gtgactgccg ttccgttttc gacaattgcc accggcattt cgccaggcat
      421 accgtgttca atcagctttt gctgaatagt cgcggcctga ttcaacccca tatagaacac
      481 cagcgtctgt ttttctgccg ccaggttttc ccagtccagc tcgccaccgg tttttaagtg
      541 tccggtaatt aagcgtacgc tctgggcata atcgcgatgc gtgagtggaa tacccgaata
      601 ggcagagcaa ccagaagctg cggtaatacc cggaaccacc gagaacggaa tacccgcgtt
      661 gcacagtgtt tccagctctt cgccaccacg gccaaaaata aacggatcgc cacctttcag
      721 ccgcaccacg cgtttgcctt tttgcgcttc ccgcagcagg atctggttaa tctcttcctg
      781 cggtacacag tggtatcccg cgcgtttgcc gacgaaaacg cgatcagcat cgcggcgtac
      841 cagattcata atatcgtcag aaaccagacg gtcgtagacc accacatctg cctgctgaat
      901 ttgttgcagt cctttcagcg tcagcagccc ggcatcgccc ggacctgcac caaccagcac
      961 cacttcaccg cgatggtcga gcggttcgtt gattaactgt tcggtcgttt cagtaatggc
     1021 tttctgatcg ttgtttgcca gcgactgcgc caggcggtcg ttaacgaaca atttctccca
     1081 gaaacggcga cgctcactca tcgtggtgaa ctgttgtttc actcgcccgc gtaattgccc
     1141 ggcatatttc gccacctggc ccagatgcaa cggcagcagt gattcgagtt tttcgcgcaa
     1201 caggcgcgcc agaaccggag aggtgccgcc agaggagacc gctaccatta gcggtgagcg
     1261 gtcaataatc gacggcataa taaagctggc ggctttcggc gcatcgacta cgttacagaa
     1321 gatgcgacga gcttcagcgg cttcgctgac gcgctggtta agcgtgtcat catccgtcgc
     1381 tgcaatcgcc agccagcagg tgtcgagaag gctttcatca aatggccctt cgacgagggt
     1441 taacatgcct gcatctgccc atgcggtgaa ctgtggaata aacgctaatg cattcaccgt
     1501 taagcgagcg cctgcgtcta acagcaacct tgctttgcgt tccgcgacat caccaccgcc
     1561 gacaatcaga cagtcgcgat cgcgtaattg gcaaaatata ggcaaatgat ccacgtaaaa
     1621 accccttagt aattaaccgg cagccgtttc agtttgatta aatttgtccg caaccggacg
     1681 attcgatttc ggcgtagcat accaataacc caatcccatg aatacggcac ctgataaagt
     1741 attacccagc gtcacccaca gcaggttatg accaataccc gccagcgtgt aggcttcgct
     1801 gtggttgccg aaccaggaga gcgcgaacag cgtcatgtta gcgatagagt gctcgtagcc
     1861 ggacgcgata aatgccagca gacaccacca gatagcgata aatttcgccg ccccttcagt
     1921 gcgcagcgcc atccagattg ccaggcaaac cagccagtta cacaatgcac ctttgaagaa
     1981 gagtaccatt gccggtgcag tggttttagc cagcgcgacg gagtgaacga tgctggtatc
     2041 taccggcagc aggctaccgc cgccccagct atagagcatg gcaacgaaga cggaaccgac
     2101 caggttaccc agccaggttt gcggcaggat tgcccacatt tgcccgtggc tgatgctgcc
     2161 cgcttttacc ccaaaggtga ggaacatggt gtgtccggtg aacagttcag aaccggcgat
     2221 aatcaccagc gttaaggcga taccaaaggt cgcgcccatc accagcggac gtacggacgg
     2281 gtcgagcaaa ttaccgagcg tgaaaatcaa gatgatccca agacccacat acgcgcccgc
     2341 catggcggag ctgacccaaa agccgagcgg gttatttgcc gacaggcgtg caatgcgcgc
     2401 agcgttagcc gcacacttat taatagtgtc tgtaaacatt tgattatcct ttaaaaaata
     2461 aaaacaaaaa aataaaacaa aaagtttaaa aaatgtcctg caatataccg aaggtaatta
     2521 caggaccatg caaaaagggg aggcattgcg cctcccgtta aaacattaac cgcgcagctg
     2581 caccacgccg tctttcactc gtgcttcgta atgtttgacg gaaaactgtt cgtcttccat
     2641 gcacaagcca tcacttaagc gaaaacgctg ttttttcagc gggctggcga cccacagctc
     2701 gccctggtgt tccgcaatca gcccgcgtga cagcacgctg gactcgaaga acggatcgat
     2761 gttgctgatc gcaaacacct ggtcgctgtg atacgggcgg aaaatcgcga cctgctcgtc
     2821 gcctaacagc gcgcagacgc cggtttcagg caggatgtca tcgattttgc agatgtcttt
     2881 ccactggctc atgcgttgtc ctccaccaga gttaccggga tacgttcata cggcgttgcc
     2941 ggacggtgct gttcgcgctc tggcaccatc tgcacgttcg ggtcacgctt gtcgctgttg
     3001 atgaagtgtt tgaagcgagt ctgcgcggac ggtgtattga ccgtttcagt ccactcacac
     3061 actaccgctt cacgcaggcg cgccatctct tcttccagat gagcgttcag ccccagtttg
     3121 tcgtcaatga tcaccgcttt caggtaatcg atgccgcctt cgaggttttc taaccacggc
     3181 gcggtacgcg tcagtttgtc ggcggtacgg atgtagaaca tcatgaagcg gtcgagatat
     3241 ttgatcagcg tttcgcgatc gatatcagct gccagcagat ccgcatgacg cggtttcatg
     3301 ccgccgttgc cgcaaacata caggttccag cctttttcag tggcgataat acccacgtct
     3361 ttaccctgag cttctgaaca ttcacgggta cagccggaga caccgaactt cattttgtgc
     3421 ggcgtacgga tgcctttgta gcggttttcc agttccacgc cgaggccgac gctgtcgcca
     3481 acgccgtagc ggcaccaggt gctacccacg caggttttcg ccatacgcag tgctttcgca
     3541 taggcatgac cggtttcgaa gccggcttca atcagctgac gccagatctc tggcagatcg
     3601 tctttctgtg cgccaaacat cgccaggcgc tgggaaccgg tgattttggt gtagagatta
     3661 aattcacgcg cgatacgacc cactgccatc agcccttccg gggtgatttc accgcccgga
     3721 gaacgcggga tcaccgagta ggtcccgtct ttctggatgt tagcgaggaa gttgtcgtta
     3781 gaatcttgca gcggagtatg ttctggcttc agaatgtatt cgttccagca ggaggccagc
     3841 agcgaaccga cggtcggttt acaaacttca caaccgtagc ctttgccgtg tttcgccagc
     3901 agttcttcga aggttttaat gccttcaacg cggatcaaat ggaacagttc ctgacgcgaa
     3961 taagcaaagt gttcgcacag gttgttgtta acttcgatgc cctgtttcgc cagttccgcg
     4021 ttcagtacct gagtgaccag cgggatacag ccaccgcagc cagtacccgc tttggtttca
     4081 gctttcagcg ccgcaactgt gtggcagcct ttgttgatgg cagcaatcag atcaccttta
     4141 gtgacgtcga agcaggagca gatttgcgcg ctgtccggca gtttatcaac accgatagac
     4201 ggcttaccgc tacccgagtg cgccggcaga atcagagaat ccgggttttc cggcagctcg
     4261 atagcattca gcaccagttg cagcaagtta ccgtagtcgc tggtatcgcc caccagtacc
     4321 gcaccgagca gggttttgtt gtcttcgctg acgatcaggc gtttgtagat ctctttgctt
     4381 tcgtcgaggt aaacgtagct acgtgcgcca ggcgtgcgac catgagcatc accaataccg
     4441 cctacgtcca cgcccagcag tttcagcttg gcgctaaggt cagcaccttc aaaggcgttt
     4501 tcgctaccga gaatatggtc aacggcgacc tgcgccattt tgtagccagg tgctaccaga
     4561 ccaaatatac ggttgttcca gcttgcgcat tcaccgatag cgtagatatc cggatcggaa
     4621 gtttggcagg aatcattaat gacgataccc ccacgcggag caacgtccag accacactgg
     4681 gttgccagct tatcgcgcgg acggataccg gtagagaaga cgataaagtc gacttccagt
     4741 tcgctgccgt cggcaaaacg catggtttta cgtgcttcga caccttcctg cacaatctca
     4801 agggtgtttt tgctggtgtg aacgcgcacg cccatacttt cgattttgcg acgcagctgc
     4861 tcgccaccca tctgatcaag ctgttccgcc atcagcatag gggcaaattc gataacgtgg
     4921 gtttcaatac ctaagttttt cagcgcgcca gcggcttcca gacctaacag gccgccacca
     4981 acaacggcac cgcgtttgct gcgacgggcg caggattcaa tggcgttgag gtcttcaatg
     5041 gtgcgataga caaagcagtc ctgagtatca gaacctttga ttggtgggat ccacgggtag
     5101 gaaccggttg ccatgatcag cttgtcataa aaaacggtac gtccggcgct ggagtgaatc
     5161 accttctcct gacggttgat ggtgatagcg cgttcgccga ccagaacttt gatgccgtgt
     5221 ttctcgtaga agccttcgcg caccagcgac agctcttcgg cggtgtggtg agagaagtaa
     5281 gacgagaggt gtacgcggtc ataagcgatg cgcggttctt cacagaaaac ggtaatatca
     5341 aagttggccg catcagattt atcaagaaga tcttcgataa agcgatggcc gaccataccg
     5401 ttaccgataa ttgcgagtct gactttgctc atttttgcct cgatttcttt tctattaccg
     5461 cctaccttaa cgattcagca accccgctta ttgatgtaaa tcaaattcac ctttatatac
     5521 cccttaaggg gtatattgct gatttgtata aattttctta agtcacggaa ttgtctgaca
     5581 tttcatgttt gtgcaaaaaa tagacaaaat gaacgggttt atagaaatag atgcacgtag
     5641 cggggttaga gaggaaaagg ccggacgacg atagtgccgt ccggcattag caattaatga
     5701 gaggtcaggg tgttatgctg acggtgacgg ctgacgaaac ctaacaggaa gcacatcaca
     5761 aagacgacag cgtacagacc gtttgctgta agcagtgccg cctgcggacc gctatgttca
     5821 acaatcgggc cggtaaccac aaaggtcaac atagtaccga tggttccgca ggtcaggaca
     5881 aagttaacca gttttggcga cggtactttg gtctgctgtg aacccagggt gatgatggtg
     5941 gtatagatcg cgctggagaa gaagcccaga gcgagaattg accacgccat atgtgctggt
     6001 gttccggtgt taaagacgta catcagaatc gcagccagac cagccagtac ggtcagaatg
     6061 cgttgcaaat caaagaagcg aagaataaag ctgaacgccc acatgccgac catgtatgac
     6121 atccagaagt tactcaccag cgtgcccgcg tcgttcaggc tcatgcccag gcctttggca
     6181 tactcaggca cccaggagat aaaacctaac tgaccgagga tgtagcacag cgccgcaaca
     6241 gagagaaaca gtacgccgat cccccacttt tctttctcta ccggagcatc cgtttttggt
     6301 gcatgtttgc ccagtgctgg gaactcacag ccgaaggtca gaataaaaat agcgacatac
     6361 accagcccga tgcaggcata aacccagtac cactcaatgc tgcgcgccag tagaaacgcg
     6421 gcgatcattg ggaaaatcat cccagccata ctgaagaagg agtcagtaaa taacaggcgg
     6481 gaaccgcgct gacgcccttc atacatttgt gttatcagga atgtaccaat cgacatagta
     6541 atgccgctga ccaccccgag aatgaacatc gccgtcgaga acagcgccag gctgtggctg
     6601 aacatcaaac cggcaaccgc cagcaccatc aggagaaagc caaaacgtaa ctgcgttttc
     6661 aacgggacga tttccatcag ccaggcgttg aggaagatag agattaaaat gccggcgttg
     6721 aggaaggtga aggtgttact catactggaa acaggcagat tgaaataatc ggcgatattt
     6781 cccatcacca tcccggtgac aataaccaac gcaccagtca gtgcgtagga gagaaagcta
     6841 atccatgtga gcttgatgcg attgctgtta gtcatgattg gcctgcgttc aaaaataaaa
     6901 tggcatagcg ggatatgccg cgagcgggtg attttaggtg attttgtgat ctgtttaaat
     6961 gttttattgc aatcggttgc taaattgcat tttaagaagt gatcttgatc acggaataaa
     7021 aagtgatcgt caggttacat atatttcaga tacgtaaaat taggtaaagg gatggccttg
     7081 ttcttgaagg ctatttagaa tctcttcact tgcttttttt ctgctctgtt tgttaaggaa
     7141 atctcatgtt caaatcgacc ctggcggcga tggctgctgt tttcgctctt tctgctcttt
     7201 ctcccgcagc aatggcagcg aaaggggccc cgcacgtatt gttgacaacc tcagctggta
     7261 acatcgaact ggagctggat aaacaaaaag cgccagtgtc tgtgcaaaac tttgtcgatt
     7321 atgtgaacag cggtttttat aacaacacta cctttcaccg cgtcattcct ggctttatga
     7381 ttcagggcgg cggtttcacc gagcagatgc agcagaaaaa accaaacccg ccaatcaaaa
     7441 atgaagccga taacggcctg cgcaacacgc gtggcaccat cgcgatggcg cgtaccgctg
     7501 acaaagatag cgccaccagc cagttcttta tcaacgttgc cgataacgcc ttccttgacc
     7561 atggtcagcg tgatttcggt tacgcggtat ttggtaaagt ggtgaaaggc atggacgtgg
     7621 ccgataagat ttcccaggtg ccgactcatg acgttggtcc gtaccagaat gtgccgtcaa
     7681 aaccggtagt tatcctttcc gctaaagtcc tgccgtaatg atttctcgcg cgggcaatct
     7741 tgcccgcgct tctgctctcc cggcgtaacc cggatttgcc gcttatactt gtggcaaatg
     7801 gacacgttca gggaggcatc aagtgaagaa actcaccgat aagcaaaagt cccgtctctg
     7861 ggagcttcag cgtaatcgta atttccaggc cagtcgccgt cttgaaggcg tcgagatgcc
     7921 tttagtcact cttactgccg cagaggcttt agcgcgcctt gtagagctga ggaggcacta
     7981 tgagcgataa attcggcgaa gggcgcgatc cgtatcttta tccaggcctt gatatcatgc
     8041 gtaaccggct gaacatccgc cagcaacaac ggctggaaca ggccgcttac gaaatgacgg
     8101 cgctgcgtgc tgcgaccatt gagcttggtc cgctggtgcg cggtttaccg catttgcgaa
     8161 ctatccatcg ccagctgtat caggatattt tcgactgggc agggcaactg cgtgaagttg
     8221 atatttatca gggcgatacg ccgttctgcc actttgctta tatagaaaaa gagggcaatg
     8281 ccctgatgca ggatctggag gaagaaggtt atctggttgg cctggagaaa acgaagttcg
     8341 tcgagcggct ggcgcattac tattgtgaaa tcaacgtgct gcatcccttc cgggtgggaa
     8401 gtggtctggc acagcggatc ttcttcgagc aactggcgat tcatgccgga tatcaactga
     8461 gctggcaggg tatcgaaaaa gaggcctgga atcaggcaaa tcagagtggg gcaatggggg
     8521 atctcaccgc actgcagatg atatttagca aagtggtaag cgaagccggg gaatctgagt
     8581 aaaatagcgc ggttctttcg taccggagcc gccatgatcc tgcttattga taactacgat
     8641 tcttttacct ggaacctcta ccagtacttt tgtgaactgg gggcggatgt gctggttaag
     8701 cgcaacgatg cgttgacgtt ggcggatatc gacgccctta aaccacaaaa aattgtcatc
     8761 tcacccggcc cctgtacgcc agatgaagcc gggatctccc ttgacgttat tcgccactat
     8821 gccgggcgct tgccgattct tggcgtctgc ctcggtcatc aggcaatggc gcaggcattt
     8881 ggcggtaaag ttgtgcgcgc tgcaaaggtc atgcacggca aaacctcgcc gattacacat
     8941 aacggtgagg gcgtatttcg ggggctggca aatccactta ccgtgacacg ctaccattcg
     9001 ctggtggtgg aacctggctc attaccagcg tgctttgacg tgacggcctg gagcgaaacc
     9061 cgcgagatta tggggattcg ccatcgccag tgggatctgg aaggtgtgca gttccatcca
     9121 gaaagtattc ttagcgaaca aggacatcaa ctgctggcta atttcctgca tctctgattt
     9181 ccgattgcca ttcagtgatt ttttatgcat attttgtgat tataatttca tatttattta
     9241 tgcgtaacag ggtgatcatg agatggcaat tgaacaaaca gcaattacac gcgcgacttt
     9301 cgatgaagtg atcctgccga tttatgctcc ggcagagttt attccggtaa aaggtcaggg
     9361 cagccgaatc tgggatcagc aaggcaagga gtatgtcgat ttcgcgggtg gcattgcagt
     9421 tacggcgttg ggccattgcc atcctgcgct ggtgaacgcg ttaaaaaccc agggcgaaac
     9481 tctgtggcat atcagtaacg ttttcaccaa tgaaccggcg ctgcgtcttg ggcgcaaact
     9541 gattgaggcg acgtttgccg aacgcgtggt gtttatgaac tccggcacgg aagctaacga
     9601 aaccgccttt aaactggcac gccattacgc ctgtgtgcgt catagcccgt tcaaaaccaa
     9661 aattattgcc ttccataacg cttttcatgg tcgctcgctg tttaccgttt cggtgggtgg
     9721 gcagccaaaa tattccgacg gctttgggcc gaaaccggca gacatcatcc acgttccctt
     9781 taacgatctc catgcagtga aagcggtgat ggatgatcac acctgtgcgg tggtggttga
     9841 gccgatccag ggcgagggcg gtgtgacggc atcgacgcca gagtttttgc agggcttgcg
     9901 cgagctgtgc gatcaacatc aggcattatt ggtgtttgat gaagtgcagt gcgggatggg
     9961 gcggactggc gatttgtttg cttacatgta ctacggtgtg acgccggata ttctgacttc
    10021 tgcgaaagcg ttaggcggcg gcttcccgat tagcgccatg ctgaccacgg cggaaattgc
    10081 ttctgcgttt catcctggtt ctcacggttc cacctacggc ggtaatcctc tggcctgtgc
    10141 agtagcgggc gcggcgtttg atatcatcaa tacccctgaa gtgctggaag gcattcaggc
    10201 gaaacgccag cgttttgttg accatttgca gaagatcgat cagcagtacg atgtgtttag
    10261 cgatattcgc ggtatggggc tgttaattgg cgcggagctg aaaccacact acaaaggtcg
    10321 ggcgcgtgat ttcctgtatg cgggtgcaga ggttggcgta atggtgctga atgccggacc
    10381 ggatgtgatg cgtttagcac cgtcgctggt ggtggaagat gcggatatcg atgaagggat
    10441 gcaacgtttc gcccacgcgg tggcgaaggt ggttggggcg taaataagac gcatcaggca
    10501 aaatatgtcg gatgcggcgt gaatgcctta tccgatggtt tagcctgtat tacgccttcg
    10561 aatcccgcaa cttgcgactc agccaaatcc cgtgatgcgg tcgctgacgc catgccatcg
    10621 acgaaatggt gtgcatggtg ttcagatgac caataacccg ctgtaaatgc tgctccagcg
    10681 tacctgccgc gccttcgtgc ggctgcatct ccggcgcatc catgatattg gcatcgccag
    10741 aactacccgg ttcgtcatac tccagtcgct gctgacaacg ctgaatggcg atttcacaag
    10801 actgtaaata ctcttgtgcc agttcaggtg gcaatgcccg gtgttcccgc gccagcgtgg
    10861 tcatggcatt aatatgctca acaataaact ggctgtgcgt tacccacagt ttcatatctg
    10921 ccagataatg gctgttaaac gccggttcct gcatcgcctg attcaatgag ttatacagag
    10981 tgttatgtgc ctgatttacc cgcattcgct gccaggccag tggcgtaggt tgcggatcct
    11041 cgctaagaat caagcgaatc gcttcctgat aggcttctaa agcgtcatgg gcgtttttac
    11101 gcaataaccc gctctgccac tgcggccaca gccagacagt accgccgaaa gcaattaaac
    11161 aaccaataat ggtatcgata agacgcggaa ggatgtattg ctcgccgttc aaccacaata
    11221 gttgcagggt atacactgcg gtaatagtaa aaccgaccgt cgcccagccg tagtttttgc
    11281 gcaatatcag gtagctggcg agggtggtaa tcagcatcaa cgtcagggtg taaccttcgg
    11341 gaattttaaa gtgcagcgcc acgcccgcaa tgattaaccc gaccacggtt cccacggagc
    11401 gattcacaat cctcagacgg gttgcgccat agccattttg tgtcaccagc aataccgtca
    11461 tcaggatcca gtacgacttc ggcagatgca gcgcggtgcc catcaggctg gcaacgctta
    11521 acatcacact gagtcgtccg gcattgcgta gcgccggaga ctttagtgac agataacttt
    11581 tcagcgcagg aagtaatggc attcgccgct gtttatcggc cagtaagtca cgggcataga
    11641 gcggtttttg ggtgcgcagc acgcgggcga tgcggctgaa atgccagtag cagaattgcc
    11701 caaccggatt atccggatgc tggcgggcga ttttttccag tgcgccaatt tgcttttcca
    11761 tcgtaaaacg cgttggcagg cgatggtaaa gaatgtcatc agccagcacg cgcaggcgag
    11821 cggcgacggt ttgcgcattc cagcggataa cttcttccgc atggctacgc tcgaccagct
    11881 tttgcacctc ttccggctga tgcaaactga ccgaaatatg ttcctgtaaa tccagcgcct
    11941 cctggaaaat acgcagcatc cgcttgtagt cagtattatt ttgcgcggaa agcatatgca
    12001 tttgctgata gcactgggta attagatcga ccgctttttg ctggcgcacc agcagcggcg
    12061 gcagcgcttt ttcagggtcg gtgtgctggg taagcaggct gtatttggct tcacaataat
    12121 ctgccagttc acggtacagc agacttagtg actcgcgcag cggttgttcg cgccagatcc
    12181 agaaccaaaa ccagttaaac aatccgtacc agagagtgcc caacgcatag atgagcaacg
    12241 gttcccagac cggcatgtat cccgccagac tgagggtaaa aatggctgcc agcagcgatg
    12301 cgggaagcaa ttttgcgtgc aatggcccca actcagcagt gacgccaagt accagcgtta
    12361 atccggtcag caaaaagggc aggggaacat cttttgccag tagcagctgt gtcagtaagc
    12421 tacaggtggc aaacagcgac gcaccaatga ttaagcgttt gaaaaaacgt ttatgaggcg
    12481 tatcaaggcc cgcaatattg caacaggcag gaacgagaga gaagagcaga ccgaatcgta
    12541 attcgccaag cattaaccca acggccacgg gcaaacatag caccagcgtt tgtcgaagtg
    12601 catagttgat atcggggtga taaatcagtc tgcgccacat cgggggaaac aaaatggcgc
    12661 gctaccaggt aacgcgccac tccgacggga ttaacgagtg ccgtaaacga cgatggtttt
    12721 accgtgtgcg gagatcaggt tctgatcttc aagcatcttc agaatgcgtc ccacggtttc
    12781 acgagaacag ccgacaatct gaccgatttc ctgacgggta attttgattt gcataccgtc
    12841 cgggtgagtc atagcgtctg gttgttttgc cagattcagc agagtctgtg caatgcggcc
    12901 cgtcacgtcg aggaacgcca ggttgcccac tttctctgaa gtgacttgca gacgacgcgc
    12961 catctgtgca gacagacgca tcagaatgtc cgggtttacc tgaatcaatt ggcgaaattt
    13021 tttgtacgaa atttcagcca cttcacaggc ggttttcgca cgtacccatg cgctacgttc
    13081 ctggccctct tcaaacaggc ccagttcgcc aataaaatca ccctgattca gataggagag
    13141 gatcatttct ttaccctctt cgtctttgat cagcactgcc acagagcctt taacgatgta
    13201 gtacagcgtt tccgcttttt caccctggtg aataagcgtg ctcttggatg ggtacttatg
    13261 aatgtggcaa tgagacaaga accattcgag agtcgggtct gtttgcggtt tgccaagcac
    13321 catgcgcggt tatcctctgt tataagcttt ctccagagcc agataacgcc gctgtctctg
    13381 gattgccgaa atatgcttcc cgctacctgg gaaggggcta tcaactgtac tgcacggtaa
    13441 tgtgacgtcc tttgcataca tgcagtacat caatgtatta ctgtagcatc ctgactgttt
    13501 tagcatagct ttcgctttgt gtctcctggt gtctcgcttc agcatgaccc aggtcgcctt
    13561 ccgttgcgcg atttggttag tacg
//
LOCUS       DADMJB010000112        13520 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.112, whole genome shotgun sequence.
ACCESSION   DADMJB010000112 DADMJB010000000
VERSION     DADMJB010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13520)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13520)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13520
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.112"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..184
                     /locus_tag="JN078_002865"
     CDS             <1..184
                     /locus_tag="JN078_002865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HAY9042003.1"
                     /translation="WSLAAGANPSFIASQMGHTNAQMVFNVYGAWMKDNNHEQIELLN
                     RRLSESVPCMPHKKAG"
     gene            205..906
                     /gene="mlrA"
                     /locus_tag="JN078_002866"
     CDS             205..906
                     /gene="mlrA"
                     /locus_tag="JN078_002866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MlrA"
                     /protein_id="HAY9042004.1"
                     /translation="MGLPLIPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIK
                     RWIDNGVQVSKVKMLLSNENVDVQNGWRDQQETLLTYLQSGNLHSLRTWIKERGQDYP
                     AQTLTTHLFIPLRRRLQCQQPTLQALLAILDGVLINYIAICLASARRKQGKDALVVGW
                     NIQDTTRLWLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQL
                     TSWQEQGHDIFPLGI"
     gene            966..1073
                     /locus_tag="JN078_002867"
     CDS             966..1073
                     /locus_tag="JN078_002867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YohO"
                     /protein_id="HAY9042005.1"
                     /translation="MRIAKIGVIALFLFMALGGIGGVMLAGYTFILRAG"
     gene            complement(1054..1785)
                     /gene="yehW"
                     /locus_tag="JN078_002868"
     CDS             complement(1054..1785)
                     /gene="yehW"
                     /locus_tag="JN078_002868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter permease YehW"
                     /protein_id="HAY9042006.1"
                     /translation="MKMLRDPLFWLIALFVALIFWLPYSQPLFAALFPQLPRPVYQQE
                     SFAALALAHFWLVGISSLFVVIIGTGAGIAVTRPWGAEFRPLVETIAAVGQTFPPVAV
                     LAIAVPVIGFGLQPAIIALILYGVLPVLQATLAGLGAIDASVTEVAKGMGMSRGQRLR
                     KVELPLAAPVILAGVRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGAL
                     LVALAAIIADRLFERLVQALSQHAK"
     gene            complement(1790..2716)
                     /gene="yehX"
                     /locus_tag="JN078_002869"
     CDS             complement(1790..2716)
                     /gene="yehX"
                     /locus_tag="JN078_002869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter ATP binding
                     protein YehX"
                     /protein_id="HAY9042007.1"
                     /translation="MIEFSHVSKLFGAQKAVNDLNLNFQEGSFSVLIGTSGSGKSTTL
                     KMINRLVEHDSGVIRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWSVAQNIATVPQL
                     QKWSRARIDDRIDELMALLGLESNLRERYPHQLSGGQQQRVGVARALAADPQVLLMDE
                     PFGALDPVTRGALQQEMTRIHRLLGRTIVLVTHDIDEALRLAEHLVLMDHGEVVQQGN
                     PLTMLTRPANDFVRQFFGRSELGVRLLSLRSVADYVCREERAEGEALAEEMTLRDALS
                     LFVARGCEVLPVVNTQGQPCGTLHFQDLLEEA"
     gene            complement(2709..3866)
                     /gene="yehY"
                     /locus_tag="JN078_002870"
     CDS             complement(2709..3866)
                     /gene="yehY"
                     /locus_tag="JN078_002870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter permease YehY"
                     /protein_id="HAY9042008.1"
                     /translation="MTYFRINPVLALLLLLTAIAAALPFISYAPNRLVSGEGRHLWQL
                     WPQTIWMLVGVGCAWLTACFIPGKKGSICALILAQFVFVLLVWGAGKAATQLAQNGSA
                     LARTSLGSGFWLAAALALLACSDAIRRISTHPLWRWLLHMQIAIIPLWLLYSGTLNDL
                     SLMKEYANRQDVFDDALAQHLTLLFGAVLPALVIGVPLGIWCYFSTARQGAIFSLLNV
                     IQTVPSVALFGLLIAPLAALVTAFPWLGKLGIAGTGMTPALIALVLYALLPLVRGVVV
                     GLNQIPRDVLESARAMGMSGAQRFLHVQLPLALPVFLRSLRVVMVQTVGMAVIAALIG
                     AGGFGALVFQGLLSSAIDLVLLGVIPVIVLAVLTDALFDLLIALLKVKRND"
     gene            complement(3873..4790)
                     /gene="osmF"
                     /locus_tag="JN078_002871"
     CDS             complement(3873..4790)
                     /gene="osmF"
                     /locus_tag="JN078_002871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter
                     substrate-binding protein OsmF"
                     /protein_id="HAY9042009.1"
                     /translation="MPLSKVWAGSLVMLAAVSLPLQAASPVKVGSKIDTEGALLGNII
                     LQVLESHGVPTVNKVQLGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQ
                     QGYEKVKKLDSEHNKLIWLTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTF
                     KLAASAEFIERADALPAFEKAYGFKLGQDQLLSLAGGDTAVTIKAAAQQISGVNAAMA
                     YGTDGPVAALGLQTLSDPQGVQPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTL
                     QQLNASIAVEGLDAKKVAADYLKQKGWTK"
     gene            complement(5042..7339)
                     /gene="bglX"
                     /locus_tag="JN078_002872"
     CDS             complement(5042..7339)
                     /gene="bglX"
                     /locus_tag="JN078_002872"
                     /EC_number="3.2.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucosidase BglX"
                     /protein_id="HAY9042010.1"
                     /translation="MKWLCSVGIAVSLALQPALADDLFGNHPFTPEARDAFVTELLKK
                     MTVDEKIGQLRLISVGPDNPKEAIREMIKDGQVGAIFNTVTRQDIRAMQDQVMELSRL
                     KIPLFFAYDVLHGQRTVFPISLGLASSFNLDAVKTVGRVSAYEAADDGLNMTWAPMVD
                     VSRDPRWGRASEGFGEDTYLTSTMGKTMVEAMQGKSPADRYSVMTSVKHFAAYGAVEG
                     GKEYNTVDMSPQRLFNDYMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRD
                     QWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKSGINMSMSDEYYSKYLPGLIKS
                     GKVTMEELDDAARHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVAR
                     ESLVLLKNRLETLPLKKSATIAVVGPLADSKRDVMGSWSAAGVADQSVTVLTGIKNAV
                     GENGKVLYAKGANVTSDKGIIDFLNQYEEAVKVDPRSPQEMIDEAVQTAKQSDMVVAV
                     VGEAQGMAHEASSRTDITIPQSQRDLIAALKATGKPLVLVLMNGRPLALVKEDQQADA
                     ILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYSHLNTGRPYNADKP
                     NKYTSRYFDEANGALYPFGYGLSYTTFTVSDVKLSAPTMKRDGKVTASVQVTNTGKRE
                     GATVVQMYLQDVTASMSRPVKQLKGFEKITLKPGETQTVSFPIDIEALKFWNQQMKYD
                     AEPGKFNVFIGTDSARVKKGEFELL"
     gene            7535..9250
                     /gene="dld"
                     /locus_tag="JN078_002873"
     CDS             7535..9250
                     /gene="dld"
                     /locus_tag="JN078_002873"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HAY9042011.1"
                     /translation="MSSMTTTDNKAFLNELARLVGHSHLLTDPAKTARYRKGFRSGQG
                     DALAVVFPSSLLELWRVLKACVTADKIILMQAANTGLTEGSTPNGNDYDRDIVIISTL
                     RLDKLHVLGKGEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSG
                     GSLVQRGPAYTEMSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRH
                     DGRHAHDYDYVHRVRDIEADTPARYNADPDRLFESSGCAGKLAVFAVRLDTFEAEKNQ
                     QVFYIGTNQPEVLTEIRRHILANFENLPVAGEYMHRDIYDIAEKYGKDTFLMIDKLGT
                     DKMPFFFNLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHL
                     LLKMAGDGVGEAKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSD
                     EVEDILALDIALQRNDTEWYEHLPPEIDSQLVHKLYYGHFMCYVFHQDYIVKKGVDVH
                     ALKEQMLELLQQRGAQYPAEHNVGHLYKAPETLQKFYRENDPTNSMNPGIGKTSKRKN
                     WQEVE"
     gene            complement(9289..10221)
                     /gene="pbpG"
                     /locus_tag="JN078_002874"
     CDS             complement(9289..10221)
                     /gene="pbpG"
                     /locus_tag="JN078_002874"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311048.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine endopeptidase"
                     /protein_id="HAY9042012.1"
                     /translation="MPKFRVSLFSLALMLAVPLAPQAVAKTAAAITASQPEIASGSAM
                     IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPEMKGVY
                     SRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTR
                     FVEPTGLSVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNH
                     LVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW
                     IETGKVMPVPAAALSYKKQKAAQMAAAGQTAQND"
     gene            complement(10395..10982)
                     /locus_tag="JN078_002875"
     CDS             complement(10395..10982)
                     /locus_tag="JN078_002875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014170891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YIP1 family protein"
                     /protein_id="HAY9042013.1"
                     /translation="MSHVWGLFSHPDREMQVINRENETISHHYTHHVLLMAAIPVICA
                     FIGTTQIGWNFGDGTILKLSWFTGLALAVLFYGVMLAGVAVMGRVIWWMARNYPQRPS
                     LAHCMVFAGYVATPLFLSGLVALYPLVWLCALVGTVALFYTGYLLYLGIPSFLNINKE
                     EGLSFSSSTLAIGVLVLEVLLALTVILWGYGYRLF"
     gene            11152..11730
                     /locus_tag="JN078_002876"
     CDS             11152..11730
                     /locus_tag="JN078_002876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416640.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HAY9042014.1"
                     /translation="MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLV
                     VLSVALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFM
                     YGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHL
                     KHWVWLILVVVLVVGVRWWLKRRGKKKPDHQA"
     gene            complement(11860..12621)
                     /locus_tag="JN078_002877"
     CDS             complement(11860..12621)
                     /locus_tag="JN078_002877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAY9042015.1"
                     /translation="MAQVAIITASDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTA
                     REVVSHGVRAEIVQLDLGKLPEGAQALEKLIQRLGRIDVLVNNAGAMTKAPFLDMAFD
                     EWRKIFTVDVDGAFLCSQIAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHAL
                     GGLTKAMALELVRHKILVNAVAPGAIATPMNGMDDSDVKPDAEPSIPLRRFGATHEIA
                     SLVAWLCSEGANYTTGQSLIVDGGFMLANPQFNPE"
     gene            complement(12674..>13520)
                     /gene="mdtQ"
                     /locus_tag="JN078_002878"
     CDS             complement(12674..>13520)
                     /gene="mdtQ"
                     /locus_tag="JN078_002878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311052.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="multidrug resistance outer membrane protein
                     MdtQ"
                     /protein_id="HAY9042016.1"
                     /translation="QAALNTVLQQIEKEQNTIIATDRQLYQNGITSSVEGVETDINAS
                     KTRQQLNDVAGKMKIIEARLSALTNNQTKSLKLKPVALPKVASQLPDELGYSLLARRA
                     DLQAAHWYVESSLSTIDAAKAAFYPDINLMAFLQQDALHLSDLFRHSAQQMGVTAGLT
                     LPIFDSGRLNANLDIAKAESNLSIASYNKAVVEAVNDVARAASQVQTLAEKNQHQAQI
                     ERDTLRVVGLAQARFNAGIIAGSRVSEARIPALRERANGLLLQGQWLDASIQLTGALG
                     GGYKR"
BASE COUNT         3238 a         3779 c         3416 g         3087 t
ORIGIN      
        1 ctggtcactt gccgcaggag ctaatcctag ttttatcgca agccagatgg gccacacaaa
       61 cgcacaaatg gtattcaatg tttacggagc atggatgaaa gacaacaatc acgaacagat
      121 agaacttctt aacagaagac tatctgaaag tgtcccatgc atgccccata agaaagcggg
      181 gtaaaataaa aacttgcaaa atcaattggt ttacctttaa tccctgtcac gttacgcgcg
      241 tggcagaggc gttacgggtt gctgaaaccg caacggacag acggcggtca tcgactgttc
      301 aacgatgccg atattgaccg gatccgcgag atcaaacgct ggatcgacaa cggcgtgcag
      361 gtcagcaaag ttaaaatgct gctcagtaat gaaaatgttg atgtgcagaa cggctggcgc
      421 gatcagcaag aaacattact gacctacctg caaagcggca atctgcatag cctgcgaacg
      481 tggatcaaag agcgcggtca ggattacccc gcccagacac tcaccacaca tctgtttatt
      541 cctctgcgcc gacggcttca gtgccaacaa ccgactctcc aggcgctgct ggcgatcctc
      601 gacggcgtac tgatcaacta catcgccatt tgtctggctt cggcacgtag aaaacagggt
      661 aaagatgcgc tggtggttgg ctggaatatt caggatacca cccgtctgtg gctggagggc
      721 tggattgcca gtcaacaagg atggcgcatt gatgtcctcg cccactcgct caatcaacta
      781 cgccctgaac tattcgaagg ccgtacattg ctggtgtggt gcggtgaaaa tcgaacctcc
      841 gcccaacagc agcaactcac cagttggcaa gaacaaggcc atgatatttt cccactcggc
      901 atttaatgat tcgttaacaa atgcgcttta ctgtacaatc ctttcgttaa cataaggagt
      961 gcaatatgcg catagctaaa attggggtca tcgccctgtt cctgtttatg gcgttaggcg
     1021 gaattggtgg cgtcatgctc gcaggttata cctttatttt gcgtgctggc taagcgcctg
     1081 caccagcctt tcaaacaggc ggtctgcaat gatcgccgcc agtgccacca gtaacgcccc
     1141 ctggatcaca tacgcggtat taaatccgct aagcccgatg atgatgggcg tacccagcgt
     1201 gctggcccct accgttgagg cgatcgtcgc cgtaccaatg ttgataatca ccgaagttcg
     1261 cacgcccgcc agaatcaccg gagccgccag cggtagctcg accttacgca gtcgctgacc
     1321 acgactcatt cccatacctt tcgcaacttc tgtcacgctg gcatcaatcg ctcccagccc
     1381 ggcaagtgtc gcctgcagga cgggcagcac accgtaaagg atcaaggcga taatcgctgg
     1441 ttgcagacca aagccgatca ccggaacggc aatcgccagc actgcgacag gcggaaaagt
     1501 ctgtccaacg gcggcaatag tttccaccag tgggcgaaat tccgcgcccc acgggcgagt
     1561 gacagcaatt ccggcaccag tgccaatgat caccacaaac aaactcgaaa ttcccaccag
     1621 ccagaaatga gccagtgcca gagctgcaaa actttcttgc tgataaacgg gtcgtggcag
     1681 ttgtgggaac aaggcagcaa acagcggctg gctgtaaggc agccagaaaa tcagtgccac
     1741 aaacaaagca atgagccaga acagcggatc gcgcaacatc ttcatacgct tacgcctcct
     1801 ccagcagatc ctgaaaatgc agcgtgccgc aaggctggcc ctgcgtgttc accaccggca
     1861 gcacctcgca tccccgcgcg acaaacaggg agagcgcatc gcgtagcgtc atctcttctg
     1921 ccagtgcctc accttctgcc cgttcttcgc gacacacgta atccgccaca ctacgtaacg
     1981 aaagcaggcg cacacccagt tcgctgcgcc caaaaaactg gcggacaaaa tcgtttgccg
     2041 gacgagtcag catcgtcagc ggattgccct gctgcaccac ttcaccgtga tccatcaata
     2101 ccagatgttc tgccagccgt agcgcctcat caatatcatg agtgaccagc acaatggtac
     2161 gccccagcaa acggtgaatg cgcgtcatct cttgttgcaa cgcgccgcgc gttaccgggt
     2221 ccagtgcgcc aaaaggttca tccatcagta agacttgcgg atcggcagcc agtgcgcgcg
     2281 ccactcccac acgttgctgc tgaccaccgg aaagctgatg cggataacgc tcacgtaaat
     2341 ttgactccag ccccagtagc gccattaatt cgtcgatacg atcgtcaatc cgcgcccgcg
     2401 accatttttg taattgcggc acggtagcga tgttttgcgc cacgctccag tgggggaaca
     2461 ggccaataga ttgaatggca tagcccatcc ggcggcgcaa ctccagtact ggcagcgagc
     2521 gaatttcttc tccggcaaag cggatcactc cgctgtcatg ctccaccagg cggttaatca
     2581 ttttcagggt ggtggatttg ccggagccag atgtgccaat cagcaccgaa aaactccctt
     2641 cctgaaaatt gagattgaga tcgttaacgg ctttttgtgc gccgaacagt ttgctgacat
     2701 ggctaaattc aatcattacg tttcaccttc agcagtgcga taagcaaatc gaacagcgcg
     2761 tcggtaagca ccgccagaac aattaccggg atcaccccca gcaacactaa atcaatggcg
     2821 ctgcttagca gcccctggaa aaccagcgca ccaaaaccgc ctgcgccgat taacgccgca
     2881 atcaccgcca tacctacagt ttgcaccatc accacccgca ggctgcgcag aaataccggt
     2941 aacgccagtg gtaactgaac atgcaggaat cgctgcgccc cgctcatgcc catcgctctg
     3001 gcactctcca gcacatcgcg cgggatctgg ttcaaaccga ctaccacgcc gcgcaccagc
     3061 ggcagcaagg catagagcac cagcgcaatc agtgcgggtg tcattccggt tcctgctatg
     3121 ccgagcttcc ccagccacgg aaaggccgtc accagcgcgg caagcggcgc aatcaacagg
     3181 ccaaagagcg ccaccgaagg cacggtctga atgacattga gcagagaaaa aattgccccc
     3241 tgccgagcag tggaaaagta gcaccagatg cccaacggca caccaatcac taacgcaggc
     3301 agcaccgcac caaacagcaa cgtcagatgt tgtgccagcg cgtcgtcaaa cacatcctga
     3361 cggttggcgt attctttcat tagtgagaga tcgttaagcg tgccggagta cagcaaccac
     3421 agcggaataa tggcaatctg catatgcaac aaccagcgcc acagcggatg cgtggagatt
     3481 cggcggatgg catcgctaca ggccagcaat gccagcgccg cagccagcca gaaaccactg
     3541 ccgaggctgg tacgcgccag cgcactgcca ttttgcgcca gttgtgtcgc cgcctttccc
     3601 gcgccccaca ccagcaatac gaagacgaat tgcgccagaa tgagtgcaca aatgctgcct
     3661 tttttaccgg gaataaaaca ggccgtcagc caggcgcaac caacgcccac cagcatccag
     3721 atcgtttgcg gccacagctg ccagagatga cgcccctcac ccgaaactaa acgattaggc
     3781 gcgtaactga taaacggcag cgccgctgcg attgccgtca gcaacagcag cagcgccaga
     3841 acaggattaa tacggaaata agtcacggga aattacttcg tccacccttt ttgtttcagg
     3901 tagtcggcag ccactttttt ggcatccagt ccttccacag caatgctggc attcagttgc
     3961 tgcaatgttt ttgcatcgag gctggcgaag actggctgta gccactgtgc catttgcgga
     4021 tactccttca acaccgactc acgcaccact ggtgcaggcg cgtagatagg ttgcacacct
     4081 tgcggatcgc ttaaggtttg cagccccagc gccgctaccg ggccgtcagt gccgtaagcc
     4141 attgcagcat taacgccaga gatttgctgg gcagcggctt tgatcgtcac cgccgtgtcg
     4201 ccaccagcca gtgacagcaa ctgatcctga ccgagcttaa agccataggc tttttcaaac
     4261 gcgggtaacg catcggcgcg ttcgataaac tctgccgagg ctgccagttt gaaggtgccg
     4321 ccctctttca gataacgact caggtcggca agcgaagtga gtttattttt ctctgccaca
     4381 tcctgacgca cggcgatagt ccaggtgtta tttgcaggcg cgggcgtcag ccagattaac
     4441 ttgttgtgct ccgaatcgag ctttttgact ttctcgtaac cttgctgcgc gtttttccac
     4501 gctgcatcgt tttcatcttt aaagaagaaa gcgccattgc cggtatattc cggatagata
     4561 tccagttcac cggaagtaat cgccccgcgc accacaggag tcgttccgag ttgcacttta
     4621 ttcaccgtcg gtacgccgtg gctttccagc acctgcaaga tgatgttgcc gagtagcgcg
     4681 ccttcggtat cgatttttga accgacttta acgggggaag ccgcctgtag cggcaggctc
     4741 acggctgcca acataaccag tgaacctgcc cagacctttg agagtggcat gatgctttcc
     4801 tcattctttt actgttgttt tcagcgaatt aagagaaaag catagttgat aatgacagag
     4861 ttagcctgag cggaaggatt cagttgcaga atcagataaa tacttaaagg gcatattttg
     4921 cccggcgttt cttgccggat gcggcgtaaa cgccttatcc ggcctacaaa ggtcgaaaat
     4981 tcagcaagtt aagatatgaa catcaggcaa agggcgcaaa cgtcgcgccc ttactaaagc
     5041 attacagcaa ctcaaactcg cctttcttaa cgcgtgcgga atcagtgccg ataaagacat
     5101 tgaacttgcc aggctcggcg tcatatttca tctgttgatt ccagaacttc agcgcctcga
     5161 tatcaatcgg gaagctgaca gtctgagttt cgcccggttt cagggtgatt ttctcaaagc
     5221 ctttcagctg cttcactgga cggctcatgg aagccgtcac atcctgcaag tacatctgta
     5281 ctaccgtggc cccttcgcgt ttaccggtgt tcgtcacctg cacgctggcc gtcactttgc
     5341 cgtcacgctt catggtcggc gcagaaagtt tcacatcaga gacggtgaaa gtggtatagc
     5401 tcagaccata gccgaacgga taaagcgccc cgttagcttc atcaaaataa cgcgaagtgt
     5461 atttgttcgg cttgtcggca ttatacggac gaccggtgtt cagatggctg tagtacaccg
     5521 ggatctgccc gacagaacgc gggaaggaca tcggcagctt gccggacggg ttgtaatcgc
     5581 caaacaacac atcggcaatt gcattaccgc cttcagtccc cgcaaaccag gtttccagaa
     5641 tcgcatcagc ctgctgatct tctttcacca gcgccagcgg acgcccgttc atcagcacca
     5701 gcaccagcgg tttaccggtg gctttcagcg ccgcaatcaa gtcacgttgg ctttgcggaa
     5761 tagtgatatc ggtacggctg gaggcctcgt gcgccatccc ctgtgcttca ccgaccacag
     5821 ccaccaccat atcagattgt ttcgccgtct gcaccgcttc atcaatcatc tcttgcggcg
     5881 agcgcggatc gactttgacc gcttcttcat actgattcag gaaatcgata atgcctttgt
     5941 cactggtaac gttcgcccct ttggcataca gcactttacc gttttcaccg acggcatttt
     6001 taatcccggt cagtacggtc acggattgat cggcaacacc ggctgcggac cagctgccca
     6061 tcacgtcgcg tttactgtcc gccagtggcc caaccaccgc aatggtggcc gattttttca
     6121 gcggtaacgt ttcgagacgg tttttcagca acaccaggct ttcgcgcgcc acttcacgtg
     6181 cttctttacg gtgcaggcgg ctttcggcat tggtatccac cgggtcagac tctttcggcc
     6241 ccaaatggct gtatgggtcg ttaaacaatc ccatatcata tttaacgttc agtacatggc
     6301 gggcagcatc gtccagctct tccatcgtca ctttgccgga tttgatcaac ccaggcagat
     6361 acttcgagta atactcgtcg ctcatactca tgttgattcc ggatttcagc gccacgcgca
     6421 ccgcatcttc cgggtctgcc gccgtgccat gtttaatcag ctctttgatt gcaccgtgat
     6481 cggaaacggt gatgccttta aagccccact ggtcgcgcag aacatctttc agcagccagg
     6541 aatcggaggt ggctggcgtg ccgttcagcg agttcagcgc caccatcacc gcgccgctgc
     6601 ctgcgtccag ccccgctttg tacggcggca tataatcatt aaacaggcgc tgcggactca
     6661 tatcgacggt gttgtactct ttaccgcctt ctaccgcgcc gtatgcggca aagtgtttga
     6721 cgctggtcat caccgagtag cgatctgccg ggcttttacc ctgcatcgct tccaccatgg
     6781 ttttacccat tgttgaggtg agatacgtat cttcgccaaa accttcggaa gcacgtcccc
     6841 agcgcggatc gcgcgagaca tcgaccatcg gtgcccaggt catattcagg ccatcatctg
     6901 ccgcttcata agcagagaca cgtccgaccg ttttcactgc atcgaggtta aaagacgagg
     6961 ccagaccgag gctaatcggg aacaccgtgc gctgaccgtg cagcacgtcg taagcaaaga
     7021 aaagaggaat tttcaggcgg cttaattcca tcacctgatc ctgcatggcg cggatatcct
     7081 gacgggttac ggtgttgaaa atcgccccaa cctgaccgtc tttgatcatc tcgcggatcg
     7141 cctctttcgg gttatccggg ccgacgctga ttaagcgcag ctgaccaatt ttctcatcaa
     7201 ctgtcatttt cttaagcaat tcggtgacga acgcatcccg cgcttcgggc gtgaatggat
     7261 ggttgccgaa taaatcatcc gccagtgctg gctgcagggc cagactcacc gcgattccta
     7321 ctgaacatag ccatttcata tggatttttc ttcctctgtt gcccgacgag gcagcgaaaa
     7381 tggtgcaaaa accgtagttt gccataagca tgatggagag agaaaaagaa tgctcagttt
     7441 attgtctgaa ttttcaaaat attcactcgc tgaattgtca tacaaggcgc tattctagtt
     7501 tgtgatattt tttcgccacc acaaggagtg gaaaatgtct tccatgacaa caactgataa
     7561 taaagccttt ttgaatgaac ttgcccgtct ggtcggtcat tcacacctgc tcaccgatcc
     7621 cgcaaaaacg gcccgctatc gcaagggctt ccgttctggt cagggcgacg cgctggctgt
     7681 cgttttccct agctcactac tggaattgtg gcgggtgctg aaagcctgtg tcaccgccga
     7741 caaaattatt ctgatgcagg ctgccaatac aggcctgacc gaaggatcga cgccaaacgg
     7801 taacgactat gatcgcgata tcgtgatcat cagcaccctg cgtctcgaca agctgcacgt
     7861 tcttggcaag ggcgaacagg tgctggccta tccgggcacc acgctctatt cgctggaaaa
     7921 agccctcaaa ccgctgggac gcgaaccgca ctcagtgatt ggatcatcgt gtataggcgc
     7981 atcggtcatc ggcggtattt gtaacaactc cggcggctca ctggtgcaac gtggcccggc
     8041 gtataccgaa atgtcgttat tcgcgcgtat aaatgaagac ggcaaactga cgctggtgaa
     8101 ccatctgggg attgatctgg gcgaaacgcc ggagcagatc cttagcaagc tggatgatga
     8161 tcgcatcaaa gatgacgatg tgcgtcacga tggtcgtcac gcccacgatt atgactatgt
     8221 ccaccgcgtt cgtgatattg aagccgacac gcccgcacgt tataacgccg atcctgatcg
     8281 gttatttgaa tcttcaggtt gcgccgggaa gctggcggtc tttgcagtac gtctagatac
     8341 cttcgaagcg gaaaaaaatc agcaggtgtt ttatatcggc accaaccagc cggaagtgct
     8401 gaccgaaatc cgccgtcata ttctggctaa cttcgaaaat ctgccggttg ccggggaata
     8461 tatgcaccgg gatatctacg atattgcgga aaaatacggc aaagacacct tcctgatgat
     8521 tgataagtta ggcaccgaca agatgccgtt cttctttaat ctcaagggac gcaccgatgc
     8581 gatgctggag aaagtgaaat tcttccgtcc gcattttact gaccgtgcga tgcaaaaatt
     8641 cggtcacctg ttccccagcc atttaccgcc gcgcatgaaa aactggcgcg ataaatacga
     8701 gcatcatctg ctgttaaaaa tggcgggcga tggcgtcggt gaagccaaat cgtggctggt
     8761 agattatttc aaacaggccg aaggcgattt ctttgtctgt acgccggagg aaggcagcaa
     8821 agcgttttta caccgtttcg ccgctgcggg cgcagcaatt cgttatcagg cggtgcattc
     8881 cgatgaagtc gaagacattc tggcgttgga tatcgctctg cagcgtaacg acaccgagtg
     8941 gtatgagcat ttaccgccgg agatcgacag ccagctggtg cacaagctct attacggcca
     9001 ttttatgtgc tatgtcttcc atcaggatta catagtgaaa aaaggcgtgg atgtgcatgc
     9061 gttgaaagaa cagatgctgg aactgctaca gcagcgtggc gcgcaatacc ctgccgagca
     9121 taacgtcggt catttgtata aagcaccgga gacgttgcag aagttttatc gcgagaacga
     9181 tccgaccaac agtatgaatc cggggatcgg taaaaccagt aagcggaaaa actggcagga
     9241 agtggagtaa aaattacgga tggcatagta tcgccatccg tcattcactt aatcgttctg
     9301 tgccgtctgc cccgccgccg ccatttgggc ggctttttgt tttttatagc tcaacgctgc
     9361 tgctggaaca ggcatcactt taccggtttc aatccaggta cgcaggcggc tggcatcggc
     9421 aaaatgggta tatttgccaa acgcatccat cactaccagc gccaccggtt tattattgat
     9481 aaccgtacgc atcaccagac aatggcccgc cgcattggta aaaccggttt tggttaactg
     9541 aatattccag ttatcgcgat acaccagatg gttagtattg cggaacggca gcgtatacgt
     9601 cgggttagag aaggttgcca tatcttcccg ggtagtactt aactgcccga tcaacggata
     9661 ttgtttgctg gcaatgagca gtttggttaa gtcacgggca gttgaaacgt tatgcaccga
     9721 caatccggta ggttcaacaa agcgcgtgtt gttcattccg agcgatttcg ctttcgcatt
     9781 cattgcctta ataaaggctt tgtaaccacc gggataatgg tgtgcaaggc ttgccgccgc
     9841 gcggttttct gaagacatca gcgccagcaa cagcatatct ttacggctga tttcgctatt
     9901 cagtcgtacg cgcgaataga cccctttcat ctccggcgtc tggctgatat ccacttttag
     9961 tttttcatcc agcggcagtc gtgcatccag cacaaccatc gcggtcatta atttgctgat
    10021 agacgcaatc ggacgcacca gatccgggtg gttcgagtag atcactttgt tggtattcag
    10081 atcaacaatc atcgcgctac cggaggcaat ttcaggttgt gaagcggtga tagcggctgc
    10141 cgttttcgca acggcctgcg gtgccaaagg cacagccagc atcagggcca ggctaaataa
    10201 agaaactcga aatttcggca tgatgagcat tcagatagtg gttcacgcgc acaggttgcg
    10261 caccgccgga gtaaggattt actgaggcta gcgacgccat cataacgagc aaaaagtgcg
    10321 atcgtcaaag gagaatcgtg aggaaatgct gcattgctga catttacgcc agcaatgcaa
    10381 cgtcaaagaa ctttctagaa caaacgataa ccgtagcccc atagtataac ggttagggcg
    10441 agcagcactt ccagtaccag cacgccaatc gccagcgtcg aactagagaa gctaaggcct
    10501 tcctctttgt tgatattcag gaagctcgga ataccaaggt aaagcaggta gccggtgtaa
    10561 aacagcgcca ccgtgccgac cagcgcacac aaccagacca gtggataaag cgccaccaaa
    10621 ccgcttaaaa acagcggagt tgcaacgtag cccgcgaaga ccatgcagtg cgcaagtgac
    10681 ggacgctgcg gataattacg cgccatccac cagatgaccc gccccattac cgcaacccca
    10741 gccagcataa cgccataaaa caggacagcc agcgccagtc cggtaaacca ggataacttc
    10801 aggatagtgc catcgccaaa attccagcca atctgtgtag tgccaatgaa ggcgcaaatc
    10861 accggaatcg ccgccatcag caaaacgtgg tgggtgtaat ggtgagaaat cgtttcgttt
    10921 tcgcgattaa tcacctgcat ttcacgatcg ggatgggaaa acagtcccca gacatggctc
    10981 ataccgcccc cttgttgtga gttcatgaac ctgacagttc aagtataagt cagcttgtga
    11041 ttattttttg ttcgctcatg taatttgcac cgtctgatgt acgtcctttt tcagcgtgaa
    11101 tgatttccag ggtgtatgct tacaggcaac caaagggaga cagactggcc tatggatctc
    11161 aatacactca tctcacaata tggttatgcc gcgctggtga tcggtagcct ggcggaaggt
    11221 gaaaccgtga ctttgctggg aggcgttgcg gcacatcagg ggctattaaa gttcccgctg
    11281 gtggtacttt ctgtggcgct tggcggcatg attggcgacc aggtgcttta tctgtgcggg
    11341 cggcggtttg gcggcaagct gttacgccgt ttctcgaaac atcaggataa aattgagcgg
    11401 gcgcagaaac ttatccaacg ccatccgtat ctgtttgtca ttggtacgcg ctttatgtat
    11461 ggctttcggg tgattggccc gacgctgatt ggtgccagcc agctgccgcc gaaaatcttt
    11521 ctgccgctga atattctcgg cgcatttgcc tgggcgttga tttttaccac tattggttac
    11581 gctggtggtc aggtgattgc gccgtggttg cacaatctcg accagcattt gaagcactgg
    11641 gtctggttga ttctggtcgt ggttctggtg gtgggcgtgc gctggtggct gaaacggcgc
    11701 gggaagaaaa agccggatca tcaggcgtaa aaccattgcc ctgggtaagg cgttcgcgcc
    11761 gcatccgaca tccggtgcac catgcctgat gcgacgcttg tgcgtcttat catgcctacc
    11821 aaaattttac ccattgaaat aaccacgcac ctcactgcgc tattctgggt tgaactgcgg
    11881 attcgccaac ataaagccgc catccactat caacgactgc ccggtggtgt aatttgcgcc
    11941 ctctgagcac agccacgcta ccaggctggc aatctcatgc gttgcgccaa aacgccgcag
    12001 aggaatcgaa ggctccgcgt cgggcttcac gtcgctgtca tccatgccat tcattggcgt
    12061 ggcgatcgcc ccaggcgcga ctgcgttcac caaaatctta tgcctgacca gctccagcgc
    12121 catcgctttg gttaacccac cgagcgcatg tttagcggct gtgtaggcgc tggcatccgg
    12181 cagcggcgta tgttcatgta ccgatgtaat gttgatgatg cgaccgccct gcccttgttt
    12241 caccatctgg cgggccgcaa tttgtgagca taaaaatgca ccatcgacat caacggtaaa
    12301 aatcttgcgc cactcatcga aagccatatc aagaaacggc gctttggtca ttgcgcccgc
    12361 attattcacc agcacatcaa tacgccccag ccgttgaatg agtttctcca gcgcctgcgc
    12421 accttctggc agtttaccga gatccagctg cacgatctcc gcacgtacgc cgtggctaac
    12481 tacctcacgc gcggtatctt ttgccccttc ttcatctgag tgccaggtaa tgccaatatc
    12541 aaacccttgc tgcgccagta ataacgcgca ctctttgccg atccccgaat cggaggcggt
    12601 aataatcgca acctgtgcca tcgagttctc cacttaacgc tgaataaacg ttaagtatag
    12661 aaggcgcata tcatcagcgt ttgtaacccc cgcccaacgc accagtgagt tgaatggagg
    12721 catccagcca ctgcccttgc aataacaggc cattggcccg ctcacgcagc gcggggattc
    12781 tggcttcgct gacgcgggaa ccagcaatga tgcccgcgtt aaagcgcgcc tgcgcaagac
    12841 ctaccacacg caaggtatcg cgctcaattt gcgcctgatg ctggtttttc tccgcaagtg
    12901 tctgaacctg actggctgcc cgcgccacgt cattcaccgc ttcaaccacc gctttgttgt
    12961 agctggcgat agacaagttg ctttcggctt ttgcgatatc gagattggcg ttaagacgac
    13021 cactatcgaa aatgggtagc gtcaggcctg ccgtaacgcc catttgctgc gcggaatgac
    13081 ggaacagatc gcttaagtgc aacgcatcct gttgcaggaa ggccatcagg ttgatgtcag
    13141 gataaaatgc cgcttttgcc gcatcaatgg tgcttagcga tgactcaacg taccagtgcg
    13201 ccgcctgcaa atctgcccgc cgggccagta aggagtaccc cagttcatca ggaagctggc
    13261 ttgccacttt cggcaacgcg accggtttaa gcttcaatga ctttgtctgg ttatttgtaa
    13321 gtgcgcttaa ccgtgcctca ataattttca ttttccccgc gacatcgttg agctgctgcc
    13381 gggttttgct ggcattaata tcggtttcca caccttcaac tgaagaagta atcccgttct
    13441 gatatagctg gcgatcggtc gcgataatgg tgttctgctc tttttctatt tgctgcaaga
    13501 ccgtgtttaa cgccgcctgg
//
LOCUS       DADMJB010000113        13479 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.113, whole genome shotgun sequence.
ACCESSION   DADMJB010000113 DADMJB010000000
VERSION     DADMJB010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13479)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13479)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13479
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.113"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(102..3323)
                     /gene="carB"
                     /locus_tag="JN078_002879"
     CDS             complement(102..3323)
                     /gene="carB"
                     /locus_tag="JN078_002879"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HAY9042017.1"
                     /translation="MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRV
                     ILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL
                     ERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAA
                     DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEM
                     EVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIG
                     VETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDE
                     LMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQ
                     ESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVD
                     GVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGV
                     REAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLG
                     GGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLE
                     DVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAV
                     ERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQT
                     AVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPA
                     YTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKA
                     TGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRST
                     GEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELD
                     ATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIR
                     RSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK"
     gene            complement(3341..4489)
                     /locus_tag="JN078_002880"
     CDS             complement(3341..4489)
                     /locus_tag="JN078_002880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase small subunit"
                     /protein_id="HAY9042018.1"
                     /translation="MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILT
                     DPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYL
                     KRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAK
                     EVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTI
                     VPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLA
                     LASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFD
                     GTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK"
     gene            complement(4944..5765)
                     /gene="dapB"
                     /locus_tag="JN078_002881"
     CDS             complement(4944..5765)
                     /gene="dapB"
                     /locus_tag="JN078_002881"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HAY9042019.1"
                     /translation="MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL
                     LGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIG
                     TTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHH
                     RHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSRESHTGERVPGTIGFATVRAGDIVG
                     EHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNSL"
     gene            complement(5932..6846)
                     /gene="rihC"
                     /locus_tag="JN078_002882"
     CDS             complement(5932..6846)
                     /gene="rihC"
                     /locus_tag="JN078_002882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside hydrolase RihC"
                     /protein_id="HAY9042020.1"
                     /translation="MHLPIFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEK
                     TTRNALQLLHFWNAEIPLAQGAAVPLVRAPRDAASVHGESGMAGYDFVEHNRKPLGIP
                     AFLAIRDALMRAPEPVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCTP
                     NAEFNIAADPEAAACVFRSGIEIVMSGLDVTNQAILTPDYLATLPELNRTGKMLHALF
                     SHYRSGSMQSGLRMHDLCAIAWLVRPELFTLKPCFVAVETQGEFTSGTTVVDIDGCLG
                     KPANVKVALDLDVKGFQQWVAEVLALAS"
     gene            complement(6912..7862)
                     /gene="ispH"
                     /locus_tag="JN078_002883"
                     /gene_synonym="lytB"
     CDS             complement(6912..7862)
                     /gene="ispH"
                     /locus_tag="JN078_002883"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HAY9042021.1"
                     /translation="MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRY
                     VVDSLRERGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKV
                     HMEVARASRRGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEK
                     LSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVL
                     VVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQEEWVQEVKCVGVTAGASAPDILVQ
                     NVVARLQQLGGGEAIPLEGREENIVFEVPKELRVDIREVD"
     gene            complement(7864..8313)
                     /gene="fkpB"
                     /locus_tag="JN078_002884"
     CDS             complement(7864..8313)
                     /gene="fkpB"
                     /locus_tag="JN078_002884"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HAY9042022.1"
                     /translation="MSESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASL
                     SEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFT
                     AMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPALEA"
     gene            complement(8382..8876)
                     /gene="lspA"
                     /locus_tag="JN078_002885"
     CDS             complement(8382..8876)
                     /gene="lspA"
                     /locus_tag="JN078_002885"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HAY9042023.1"
                     /translation="MSQSICSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVPLFP
                     SLNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGISVILAVMMYRLKATQKLNNIAYA
                     LIIGGALGNLFDRLWHGFVVDMIDFYVGDWHFATFNLADTAICVGAALIVLEGFLPSR
                     AKKQ"
     gene            complement(8876..11692)
                     /gene="ileS"
                     /locus_tag="JN078_002886"
     CDS             complement(8876..11692)
                     /gene="ileS"
                     /locus_tag="JN078_002886"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HAY9042024.1"
                     /translation="MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAA
                     KKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPI
                     ELKVEQEYGKPGEKFTAAEFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFK
                     TEANIIRALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFQAVD
                     QDALKAKFAVSNVNGPISLVIWTTTPWTLPANRAISIAPDFDYALVQIDGQAVILAKD
                     LVESVMQRIGVTDYTILGTVKGAELELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHT
                     APGHGPDDYVIGQKYGLETANPVGPDGTYLPGTYPTLDGVNVFKANDIVVALLQEKGA
                     LLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDQKGLRAQSLKEIKGVQWIPDWGQA
                     RIESMVANRPDWCISRQRTWGVPMSLFVHKDTEELHPRTLELMEEVAKRVEVDGIQAW
                     WDLDAKEILGDEADQYVKVPDTLDVWFDSGSTHFSVVDVRPEFAGHAADMYLEGSDQH
                     RGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGADI
                     LRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNGFDPAKDMVKPEEMV
                     VLDRWAVGCAKAAQEDILKAYEAYDFHEVVQRLMRFCSVEMGSFYLDIIKDRQYTAKA
                     DSVARRSCQTALYHIAEALVRWMAPILSFTADEVWGYLPGEREKYVFTGEWYEGLFGL
                     ADSEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAVTLYAEPELAAKLTALG
                     DELRFVLLTSGATVADYHDAPADAQQSEVLKGLKVALSKAEGEKCPRCWHYTQDVGKV
                     AEHAEICGRCVSNVAGDGEKRKFA"
     gene            complement(11735..12676)
                     /gene="ribF"
                     /locus_tag="JN078_002887"
     CDS             complement(11735..12676)
                     /gene="ribF"
                     /locus_tag="JN078_002887"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HAY9042025.1"
                     /translation="MKLIRGIHNLSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGR
                     KRNLPVMVMLFEPQPLELFATDKAPARLTRLREKLRYLAECGVDYVLCVRFDRRFAAL
                     TAQNFISDLLVKHLRVKFLAVGDDFRFGAGREGDFLLLQKAGMEYGFDITSTQTFCEG
                     GVRISSTAVRQALADDNLALAESLLGHPFAISGRVVHGDELGRTIGFPTANVPLRRQV
                     SPVKGVYVVEVLGLGEKPLPGVANIGTRPTVAGIRQQLEVHLLDVAMDLYGRHIQVVL
                     RKKIRNEQRFASLDELKAQIARDELTAREFFGLTKPA"
     gene            complement(12684..12902)
                     /locus_tag="JN078_002888"
     CDS             complement(12684..12902)
                     /locus_tag="JN078_002888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2575 domain-containing protein"
                     /protein_id="HAY9042026.1"
                     /translation="MCRHSLRSDGAGFYQLAGCEYSFSAIKIAAGGHFLPVICAMAMK
                     SHFFLISVLNRRLTLTAVQGILGRFSLF"
     gene            13005..13268
                     /gene="rpsT"
                     /locus_tag="JN078_002889"
     CDS             13005..13268
                     /gene="rpsT"
                     /locus_tag="JN078_002889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006117633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HAY9042027.1"
                     /translation="MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDK
                     AAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA"
BASE COUNT         3149 a         3806 c         3400 g         3124 t
ORIGIN      
        1 aaaagattta cttaatgggc aaaaaaaacg gtcctcatca gagaaccgta ttacttattc
       61 gatcaaatta gcggatgaaa aatatccgcc atgacacgct attatttgat ctgcgcgtgc
      121 atttcctgca ccgaaattac tttttcggtc gcgtcggcat tcagcgccat cgcggtagcg
      181 aaaccaccgt tcagggtggt gtcataatgc actttatatt gcagcgcact gcgacggatc
      241 acgcgggagt cttcaatcgc gcgacggcct gaagtggtgt tgatgatgta ggtatattcg
      301 ccattcttga tgcggtcctg aatgtgcgga cggccttcat gcaccttgtt caccagacgc
      361 ggattaatgc ccgcttcgcc cagcacaatc gccgtgccgt gggtcgcatc cagctcgaag
      421 ccctgtttca gcagttttgc cgccaggtcc accacgcgtt ctttatcgcc ttcgcgcacg
      481 gaaagcaacg cacgaccgtg tttcttcatg gtggagttgc tgcccagctg cgctttggca
      541 aacgcttcag cgaaggtgcg gcccacgccc atcacttccc cggtggagcg catttctggc
      601 cctaacagcg ggtcaacacc cgggaattta ttgaacggca gcaccacttc tttcaccgag
      661 tagtacggcg ggataacttc tttggttacg ccctgctcag ccagcgattt gccagccatc
      721 acacgcgccg ccacttttgc cagcggtacg ccggtggctt tggagacgaa cggaacggta
      781 cgcgccgcac gcgggttaac ttcaatcagg tagacttcgt tgtttttcac cgcaaactgc
      841 acgttcatca gaccgcgcac ctgcaattcg aaggccagtt tctgcacctg ctggcgcatc
      901 acatcctgaa tttcctgact taaggtgtag gctggcagag aacatgcgga gtcaccggag
      961 tgcacgcccg cctgctcgat gtgctccatg atgccgccaa tcagcaccat ttcgccgtcg
     1021 cagatggcat ccacgtcaac ttctaccgcg tcatcaagga agtgatccag caacactggc
     1081 gcatcgttag acacgctgac cgccgtctgg aagtagcgac gcaggtcagc ttcgtcatag
     1141 acgatttcca tcgcccgacc gccgagaacg taagacggac gtaccaccag cgggtagcca
     1201 atctctttcg ccttctctac cgccatttca atagcggtaa cggtggcgtt cgccggttgt
     1261 ttcagtttca gacgctcaac cgcatgctgg aagcgttcac ggtcttctgc acggtcgata
     1321 gcatccgggc tggtgccgat aaccggtacg ccagcagctt ccagcgcgcg cgccagtttc
     1381 agcggggtct gaccgccgta ctgaacgata acgcctttcg gcttctcaat acgcacgatt
     1441 tccagcacat cttccagagt taccggctcg aagtagaggc gatcggaagt gtcgtagtcg
     1501 gtggagacgg tttccgggtt acagttaacc ataatggttt cgtaaccgtc ttcgcgcagc
     1561 gccagcgagg cgtgtacaca gcagtagtcg aattcgatac cctgaccgat acggttcggg
     1621 ccgccgccga gaaccatgat tttttcacgg tcggtagacg gattcgcttc gcactcttct
     1681 tcataagtgg agtacatgta agcggtgtcg gtggcgaact ctgccgcaca ggtatccacg
     1741 cgcttataaa ccgggtgcag gtcatactgg tcgcgcagct tgcggatttc cgcttcgcgc
     1801 acgcccgcca gttttgccag acgcgcatcg gcaaagcctt tgcgtttcag ctggcgcagg
     1861 aattcagcgt tcaggccagt gatgcccact tccgctactt tctcttccag acgcaccagt
     1921 tcttcaatct gtaccaggaa ccagcggtca atattggtca ggttgaacac gccgtccaca
     1981 gacaggcccg cacggaaggc atcggcgatg taccagatac gctctgcgcc agcatctttc
     2041 agttcgcgac ggattttggt taacgcttcc gggtcatcga ggctcacttt cgggtcgaat
     2101 ccagtcgcac cgacttccag gccgcgcagc gctttttgca gggattcctg ctgcgtgcga
     2161 ccaatcgcca tcacttcgcc aaccgatttc atctgagtgg tcagacggtc gttagcacca
     2221 gcgaattttt cgaagttgaa gcgaggaatt ttagtaacca catagtcgat ggacggctcg
     2281 aaggaggccg gagtacgtcc gccagtgatg tcgttcatca gttcgtcgag ggtgtaaccc
     2341 accgccagtt tcgccgccac tttagcaatc gggaaaccgg tcgctttcga cgccagcgcc
     2401 gaagaacggg acacgcgtgg gttcatttcg ataacaatca ggcgaccgtt tttcgggttc
     2461 accgcaaact ggacattgga accaccggtt tcaacgccga tttcacgcag caccgccatc
     2521 gaggcgttac gcatgatttg atattctttg tcggtcagcg tttgggctgg cgcgacagtg
     2581 atggagtcac cggtatggat gcccatcgca tcaaagtttt cgatagagca gacgatgatg
     2641 cagttgtcgt ttttatcacg caccacttcc atctcgtact ctttccagcc gatcagcgac
     2701 tcatcaatca gcagctcttt ggttggggag agatccagac cgcgggcgca aatttcttca
     2761 aactcttcgc ggttataagc gataccgccg ccgctaccgc ccatggtaaa ggatgggcga
     2821 ataatgcacg ggaagcccac gtcagcggca accgccagcg cttcttccat cgtgtgtgcg
     2881 ataccggaac gcgcggtttc cagaccaatt ttcttcatcg ctacgtcgaa acgacggcgg
     2941 tcttctgctt tatcaatcgc atcggcggtc gcaccaatca tagtcacgcc gaactcttcc
     3001 aacacgccct gacgctccag ctccagagcg cagttcagcg ccgtctgacc gcccatcgtt
     3061 ggcagcaccg cgtccgggcg ctctttttca ataatcttgc gtactacttc ccagtgaatc
     3121 ggctcgatgt aggtcgcatc ggccatttcc gggtcggtca tgatggtcgc cgggttggag
     3181 ttcaccagaa tgacgcggta accctcttcg cgcagggctt tacatgcttg cgcgccagag
     3241 tagtcaaact cacacgcctg accgataaca atcgggcccg cacccagaat caggatactt
     3301 tttatatctg tacgttttgg catggctctt ttactcctga ttacttagcg gttttacggt
     3361 actgctcaat taactcgata aagtggtcga acaacggcgc tgcgtcgtgt ggcccagggc
     3421 tggcttccgg gtgaccctgg aagctgaacg ccggtttatc agtgcgatga atgccctgta
     3481 acgtaccgtc gaacagggat ttatgcgtga cacgcaggtt tgcaggtaat gttgcttcat
     3541 ccaccgcaaa accgtggttc tgggcggtga tcatcaccac gtttttctcc acatctttaa
     3601 ccggatggtt gccgccgtgg tgaccaaatt tcattttgac agtcttcgca ccgctcgcca
     3661 gcgccagcag ctgatgaccg aggcagatgc cgaataccgg aatatcggtt tcgaggaatt
     3721 tctggatggc ggtaatggcg taatcgcacg gggccgggtc gccaggaccg ttggagagga
     3781 agatgccgtc tggattcatt ttcagcacat cttccgcaga agtttgcgcc ggaacgatgg
     3841 tcaggcgaca gcctctatcc accagcatcc gcaggatgtt gcgcttggca ccaaaatcat
     3901 aagccacgac gtggaacggc agctcgtctt cttttttcgc ttctggcagg ccgccggtca
     3961 acgtccagct cccttgtgtc cagctatagg cttctgcggt ggtcacttct tttgccagat
     4021 ccatgccatt cagacctggg aacgcgcggg ctttttctaa cgccaacgcc gcatccgggt
     4081 tatcgcctgc gataatgcag ccattctgtg cgcctttctc gcgcagtaaa cgcgtcagct
     4141 tacgggtatc gatatcggca atcgccacga tgttatggcg cttcaggtaa gaagagaggt
     4201 cttcggtatt acggaagttg ctggcaatca gcggcaggtc gcgaatcacc agaccttgtg
     4261 catgtacctg agaagattct tcatcggcgt cattagtgcc gacattgcca atatggggat
     4321 aagtaagagt aacgatttga cgagaatagg aaggatcagt gaggatttct tgataaccgg
     4381 tcattgaagt attgaaaacg acttccccaa ccgccgaacc tgttgcccct atggcccgac
     4441 cgtgaaactg ggttccgtct tccagaacca atagcgctga cttaatcaaa acaccctcca
     4501 gagaatattc actcacttta tttgcatatt aattcacaat gatgacgtaa atcaatgcaa
     4561 atctgcttac cgacgaattt ctggcaaacg gcggcattct ggagatatgg gcgctaaaag
     4621 tcaacttaat ggcgggattt tttatattat tttgtggctc atgcatgttt tacaggcatt
     4681 aagcgacaaa aagatcatat aacctgttct ggaaaacgct tgcacagcaa gaagattgca
     4741 tgaaataaaa gggagcaggg aaaagtggac caaatggtca aattttacat taaaacaaca
     4801 aaaacagaag acaaaacatg taatttttgg cacttataga caatttaaaa acataacact
     4861 aaaaataaaa gggccaaaat taaagcccct tataatcaat aaattaaatg tgttattttt
     4921 gcaccataac aaatattttg tggttacaaa ctattgagat caagcacatc tcgcatatca
     4981 aaaagaccac tttccttacc actcaaccac aaagccgatc ttaccgcgcc gttagcaaat
     5041 gtcatgcggc tggacgcctt atgggtgatc tccagacgct cgccaatatc ggcaaacatc
     5101 gcggtatgtt cgccaacgat gtcacctgca cgcacggtgg caaaaccaat ggtgccaggc
     5161 acacgttcac cggtgtggct ttcacgactg tagaccgcgc aatctttcag atctttatca
     5221 agggcgtggg cgatcgcctc tcccattgcc agtgcggtgc ctgacggcgc atcaacttta
     5281 tgtctatgat gtgcttcaat aatttcgata tcggtgtagt cacccatcac tttggctgct
     5341 ttctccagca gcttaagcat gacgttaacg ccaacgctaa aattggcggc aaagacaatc
     5401 gcaatatcgg cggcagcgtc acgaatcgcc tgtttaccgg cttcgtcaaa ccccgtagtg
     5461 ccgatcacca tccctttgcc atgctggcga caaaaagcga gatggttcag cgtaccttcc
     5521 ggacgggtaa aatcgataaa cacatcaaaa tcatctttta ccgcatcgag gctgctttgc
     5581 acggtaacgc ctgttttccc tgcaccagcc agctcaccgg cgtcgctgcc cagtaaagaa
     5641 gatccttcgc gctccagcgc cgcgcccagc tgcacgcctt ctaatgccag cgccgcctga
     5701 atcaactggc ggcccatacg ccccccggct cccgcgatgg caacgcggat gtttgcatca
     5761 tgcatagcta ttctcttttg ttaatttgca tagaccgttt tcagagtaac cagcgcatcg
     5821 ctacgccgcc agccaaaaac gctgataatt agaaattaat gataaacagg gagggatatc
     5881 agtgaaaggc atgagtcgat gaatgactgc atgccgataa catgtgacag gttacgacgc
     5941 cagagccagc acctcagcca cccactgctg gaagcctttc acatccagat ccaatgccac
     6001 ctttacattg gctggtttgc ccaggcaacc gtcgatatca accaccgtcg tgcctgaggt
     6061 aaattcgccc tgagtttcca ctgccacaaa acacggtttg agagtgaaca attccgggcg
     6121 caccagccag gcaatagcgc aaagatcgtg catacgcagt ccactttgca tactgccgct
     6181 acggtagtgg ctaaacaggg cgtggagcat ttttccggtg cgattcaact ccggcaaagt
     6241 agcgagatag tcaggggtta atattgcctg attggtgaca tccagaccgc tcatgacgat
     6301 ttcgatgccg ctacggaaga cacaggcagc cgcttctgga tcggcagcga tattaaactc
     6361 ggcgtttggt gtgcagttgc cgcgaccagc agaaccgccc atgatcacca gacgacgaat
     6421 atacggttta cattccgggc attgtgaaag taacagcgca atattggtta acgggccgat
     6481 ggccaccagg gtaacgggct ctggtgcacg catcagggca tcccgaatcg ccagaaacgc
     6541 tggtatcccg agcggctttc ggttgtgctc aacaaagtcg tagccagcca ttcccgattc
     6601 gccgtgcaca gatgccgcat cacgcggtgc gcgtaccagc ggcacagcgg ctccctgggc
     6661 gagcggaatc tccgcattcc agaaatgcag cagttgcagg gcgttgcggg tggttttctc
     6721 aaccgagaca ttacccgcga cggtggtcat cagttgcagg tcgagttcgg gtgcaaaaat
     6781 cgcggcggca atggcgacgg catcgtcaat gccggggtca gtatcgagga agataggtaa
     6841 atgcatgttt tctccataaa aaatgccggt aacaagaccg gcattttcgc ataacttagg
     6901 ctgctaatga cttaatcgac ttcacgaata tcgacacgca gctctttcgg cacttcgaaa
     6961 acaatgtttt cttcacggcc ttccagcgga atggcttcac caccgcccag ctgctgcaaa
     7021 cgtgccacca cattctgcac cagaatatcc ggagccgatg cgcccgcagt cacgccgacg
     7081 catttaacct cttgcaccca ctcttcctgg atgtctttcg catcgtcaat caaaaacgcg
     7141 cgtttgccca tacgctgggc cagctccgcc agacggttgg agttggagga gtttttcgaa
     7201 ccgaccacca acacaacttc cgcctgttct gccagggcgc gtaccgcttc ctgacggtta
     7261 gtcgtggcgt agcagatgtc atctttgcgc ggaccgacaa ttttcgggaa gcgtttacgc
     7321 agcgcgtcga tcacatcaga cgtgtcatcc accgacagcg tggtctgggt cataaaggag
     7381 agcttctctt cgtttttgac cgtcagtttc cacacatcgt ccggcgattc gaccagatac
     7441 attccccctt ccgggttact gtactggccc attgtccctt ccacttccgg gtgcccggcg
     7501 tgaccgatga gaatagattc ttcgccacgg cgactggcgc gggcgacttc catatgcact
     7561 ttggtcacca gcggacaggt cgcgtcaaat accgtcaaat cgcgactttt tgcttcgtta
     7621 cgtaccgcct gagaaacacc gtgtgcggag aaaatcagga tcgcgccgtc cggtacttcg
     7681 ctaatctgct caataaagat agccccacgc tcacgcaagc tatcgaccac atagcggtta
     7741 tgtaccactt cgtgacggac atatatcggt gcgccgtaaa tggccagcgc gttttcaaca
     7801 atgctgatag cgcggtctac cccggcacaa aaaccacgcg ggttggccaa caggatctgc
     7861 atgttacgcc tccaatgccg gatcgatttc cagcacttca atatcaaaat gaacggtctg
     7921 cccggccaga ggatggttga aatcaacggt aatggagtcg ccgttaattt cgcggatcac
     7981 gccaggcatc tcactgccat ccattgcggt aaaaagcatg attgcgccaa tttctggctc
     8041 gcctgcatcc ataaattcac ggcgggagaa gtactgaatc aggtccggtg acggcacgcc
     8101 aaacgccgca tctggctcca acgagaaggt ggttttatcg cccactttca gccccaacag
     8161 gtgttgctcc agcccttcag aaagagaagc atcacccagg cggaacagcg ccggtttacc
     8221 gttgttgcgg gtagactcgg cggtggtgcc atcgtcgagt tttagcgtga agtgcaccag
     8281 gacggcgcta ttgctctgta cagattcaga catgcaggtt tgctcttata tttgaggatt
     8341 tttgccggat gcggcgtaaa cgccttatcc ggcagggttt attattgttt tttcgctcta
     8401 gaaggcaaaa aaccttccag cacaatcagt gccgcaccga cacagatggc agtatcggca
     8461 aggttgaagg tggcgaagtg ccagtcgccg acgtagaagt cgatcatatc gacaacgaag
     8521 ccgtgccaca ggcggtcgaa caggttgccc agcgcgccgc caataatcag cgcgtaagcg
     8581 atattgttta gcttctgcgt ggccttcaag cgatacatca tcactgccag gatcacgcta
     8641 ataccaatcg caataccggc aaagaaccaa cgctgccagc cgccgctatc ggcaaggaaa
     8701 ctaaacgccg cgccatagtt acgcgcataa tgcagattaa gcgacgggaa cagcgggacc
     8761 gtatccccca gagcaaagtt ctggaggatc aggtatttgc tgcccagatc gataatcagc
     8821 acgactacca ccagccacag ccagcgtagc cctgttgaac agatcgattg actcatcagg
     8881 caaacttacg tttttcaccg tcaccggcga cgttgctgac acagcggccg cagatttctg
     8941 cgtgttccgc caccttgccg acatcctggg tgtagtgcca gcagcgtggg cacttctcac
     9001 cttcggcttt actcaacgcg actttcagcc ctttgagtac ttcgctctgc tgagcatcag
     9061 caggtgcgtc gtgatagtct gcaacggtag cgccggaggt caacaggaca aatcgtaatt
     9121 catcgcccag cgcggtcagt ttcgccgcca gttccggttc tgcatacaag gttactgccg
     9181 cttccagcga gccacccact ttcttgtcgg cacgcgcttg ctcaatgact ttgttcactt
     9241 cgccacgcac tttcaacagc tcgtcccaga acgcatcgtt catcgcttcg ctgtctgcca
     9301 ggccaaacag gccttcgtac cactcaccgg tgaagacgta tttttcacgt tcgcccggca
     9361 ggtagcccca cacttcatca gcggtgaagg agaggattgg tgccatccag cgcaccagcg
     9421 cttctgcgat gtgatacagc gcagtctggc agctacgacg cgccacactg tccgctttgg
     9481 cggtgtactg acggtctttg atgatgtcga ggtagaagga acccatctca acggagcaga
     9541 agcgcatcag acgctgtacc acttcgtgga aatcgtatgc ttcgtacgcc ttgaggatgt
     9601 cttcctgtgc cgctttcgca caacctacgg cccagcgatc cagtaccacc atctcttccg
     9661 gtttcaccat atcttttgct ggatcaaaac cgttcaggtt tgccagcagg aagcgcgcgg
     9721 tgttacggat acgacgatag ctatcggcag cacgtttcag gatctcgtca gaaacggcca
     9781 tttcaccggt gtagtcggtt gatgccaccc acagacgcag aatatccgcg cccagtttgt
     9841 tcatcacatc ctgcggcgaa acggtattgc cgatggattt agacatcttg cggccctgac
     9901 catccacggt aaagccgtgg gtcagtacct gacgatacgg cgctttgcct ttcatcgcgg
     9961 tggagatcat tagggaagac atgaaccaac cacggtgctg gtcagaacct tccagataca
    10021 tgtccgctgc gtgaccggca aattccggac gcacgtcaac aacagaaaag tgggtagatc
    10081 cggagtcaaa ccatacatcc aatgtgtccg gcactttcac gtactgatca gcttcatcgc
    10141 cgaggatctc tttcgcatca agatcccacc acgcctggat gccgtcaact tcaacgcgtt
    10201 ttgccacttc ttccattagt tcgagagtac gcggatgcag ctcttccgtg tctttgtgca
    10261 cgaacagtga catcggtacg ccccaggtgc gctgacggga gatacaccag tcaggacggt
    10321 tagcaaccat cgactcgata cgcgcctggc cccagtccgg gatccactgc acgcctttga
    10381 tctctttcag tgactgcgca cgcagacctt tctgatccat gctgacgaac cactgcggcg
    10441 tcgcgcggaa gatgatcggc gttttgtgac gccagcagca cggatagctg tgctgcattt
    10501 tctcaacgtg cagcagcgcg cctttttcct gcagcagcgc aacgacgatg tcgttcgctt
    10561 tgaagacgtt cacgccatcc agcgtcggat aagtgcccgg cagataagtg ccgtccgggc
    10621 caaccgggtt agcggtttcc aggccgtatt tctgaccgat cacatagtcg tccgggccgt
    10681 ggccaggcgc ggtgtgaacg gcaccggtac cggcatccag ggtaacgtga tcgccgagga
    10741 ttgccggaac gtcgaagccc ataaacggat gggtaaagcg cagcaactca agctccgcac
    10801 cttttaccgt gccgagaatg gtgtaatcgg tcacgccgat acgctgcatt acgctttcaa
    10861 ccagatcttt cgccagaatc acggcctgac cgtcgatctg caccagcgca tagtcgaaat
    10921 caggtgcaat agagattgcg cggttcgcag gcagagtcca cggcgtagtg gtccagatca
    10981 ccagcgagat tgggccgtta acgttgctta cggcaaattt tgctttcagt gcatcctgat
    11041 cgaccgcctg aaaagcaacg tcgatggacg gagaagtttt gtcgtaatac tcaacttccg
    11101 cttccgccag cgcagaacgg cagtcaacgc accagtgtac cggcttcgcg cctttgtgca
    11161 ggtgaccgtt gccgatgatt ttgcccagcg cgcggatgat gttggcttca gttttgaagt
    11221 ccatggtcag gtacgggtgc gaccagtcgc ccagcacgcc cagacggata aagtctttgc
    11281 gttgaccgtc aacctgggtc gccgcgtatt cgcggcactt ggcgcggaac tcggcggcgg
    11341 tgaatttctc acccggctta ccgtattctt gctctacttt cagctcgatc ggcagaccgt
    11401 ggcagtccca gccaggcaca tacggcgagt cataaccgga aagccctttg gacttcacga
    11461 taatgtcttt cagaatcttg ttaaccgagt gaccaatatg aatgctgcca ttcgcataag
    11521 gagggccatc atgcagaatg aaggtttttt tgcctttttt agccgcacgg atgatgccgt
    11581 acagatcatc atcagtccaa cgcgccagca ttcccggttc gcgcttggcg agatcgccac
    11641 gcatcgggaa ccctgtttcc ggcaaattca gggttgattt atagtcactc atcagattct
    11701 cggttccgtg tttcggtttg attacataac aggcttaagc cggttttgtt agcccaaaaa
    11761 attcgcgggc ggttaattca tcacgcgcaa tctgcgcttt cagttcgtcc agcgacgcaa
    11821 atcgctgctc attgcgtatt tttttacgca gcactacttg tatatggcga ccgtaaaggt
    11881 ccattgcaac atctaacaaa tgcacttcca gctgctggcg aataccggca accgttgggc
    11941 gtgttccgat gtttgccacg ccgggtaacg gcttttcacc gaggcccagc acttctacca
    12001 cataaacccc tttcaccggg gaaacctgac ggcgtagcgg tacattcgcc gtcgggaaac
    12061 ctatagtgcg ccctaattca tcaccgtgga ctacacgccc ggagatggca aacgggtgcc
    12121 ccagtaaact ttctgccaga gccagattgt catccgccag cgcctgacgc acagcggtgc
    12181 tgctaatacg cacgccacct tcgcaaaaag tttgcgtact agtgatatcg aagccgtatt
    12241 ccatgccagc tttctgtaat aacaagaaat cgccttcacg accagcgcca aagcggaaat
    12301 catcccctac ggcaagaaat tttacgcgca aatgcttcac cagaagatcg ctgatgaaat
    12361 tttgcgcggt taacgccgcg aaacgcctgt cgaaacgcac gcacagcacg taatcaacgc
    12421 cacactctgc aaggtaacgc agtttttccc gcagccgggt cagtcttgcc ggggctttat
    12481 cggtagcaaa cagttccagt ggttgaggtt caaaaagcat caccatcacc ggtaagttgc
    12541 gcttgcgccc ttcttcctgc aagccctgta acagcgcgcg atgaccgcga tgcacgccgt
    12601 cgaaattacc aatagtcagc acacaccctt cttgcggggc ctggctgaga ttatgtatgc
    12661 cgcgtatcag cttcatgtct ggctcaaaac agtgaaaatc gtccgagtat accttgtaca
    12721 gcggtcaagg ttaaccggcg attgagtacc gaaatcagaa agaagtggct tttcattgcc
    12781 atggcgcaaa tcacgggaag aaagtgaccg cctgctgcaa tttttatcgc ggaaaagctg
    12841 tattcacacc ccgcaagctg gtagaatcct gcgccatcac tacgtaacga gtgccggcac
    12901 attaacggcg cttatttgca caaatccatt gacaaaagaa ggctaaaagg gcatattcct
    12961 cggcctttga attgtccata tagaacacat ttgggagttg gaccttggct aatatcaaat
    13021 cagctaagaa gcgcgccatt cagtctgaaa aggctcgtaa gcacaacgca agccgtcgct
    13081 ctatgatgcg tactttcatc aagaaagtat acgcagctat cgaagctggc gacaaagctg
    13141 ctgcacagaa agcatttaac gaaatgcaac cgatcgtgga ccgtcaggct gctaaaggtc
    13201 tgatccacaa aaacaaagct gcacgtcata aggctaacct gactgcacag atcaacaaac
    13261 tggcttaatc gccaatttgc tgaagctttg tgaaaaagcc cgcgcaagcg ggttttttta
    13321 tgcctgctgc ttttatgatg cgtgagagaa cacactaccg gttgccagat agtcaaaaga
    13381 tgctggcttt tgcagacacg ccgttacact ttctgaactc ttcgtggctt aagaatcgta
    13441 gaaccatcgg ctgatacatt ctgaacaaga atatctact
//
LOCUS       DADMJB010000114        13431 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.114, whole genome shotgun sequence.
ACCESSION   DADMJB010000114 DADMJB010000000
VERSION     DADMJB010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13431)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13431)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13431
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.114"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..309
                     /locus_tag="JN078_002890"
     CDS             <1..309
                     /locus_tag="JN078_002890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042028.1"
                     /translation="VVLNGKINGNACIVVPLSTTRDHDKLNRGMHVEIASNVINGLQF
                     FDQQIRWAKADLVQQVSRNRLNRARTYRGYLNQCLPHELVADIQRAVIKSINAILLIN
                     "
     gene            508..789
                     /gene="ppiC"
                     /locus_tag="JN078_002891"
     CDS             508..789
                     /gene="ppiC"
                     /locus_tag="JN078_002891"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004097481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PpiC"
                     /protein_id="HAY9042029.1"
                     /translation="MAKTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSG
                     KRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRN"
     gene            complement(876..2351)
                     /gene="ilvC"
                     /locus_tag="JN078_002892"
     CDS             complement(876..2351)
                     /gene="ilvC"
                     /locus_tag="JN078_002892"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HAY9042030.1"
                     /translation="MANYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVG
                     CGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLV
                     VNLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTE
                     VREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDL
                     MGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEKLIQFGWETITEALKQGGITLMMDR
                     LSNPAKLRAYALSEQLKEIMAPLFQKHMDDIISGEFSSGMMADWANDDKKLLTWREET
                     GKTAFETAPQYEGKIGEQEYFDKGVLMIAMVKAGVELAFETMVDSGIIEESAYYESLH
                     ELPLIANTIARKRLYEMNVVISDTAEYGNYLFSYACVPLLKPFMAELQPGDLGKAIPE
                     GAVDNAQLRDVNEAIRCHAIEQVGKKLRGYMTDMKRIAVAG"
     gene            2501..3391
                     /gene="ilvY"
                     /locus_tag="JN078_002893"
     CDS             2501..3391
                     /gene="ilvY"
                     /locus_tag="JN078_002893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator IlvY"
                     /protein_id="HAY9042031.1"
                     /translation="MDLRDLKTFLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLG
                     QPLFVRDNRTVTLTEAGEELRVFAQQTLLQYQQLRHTIDQQGPSLSGELHIFCSVTAA
                     YSHLPPILDRFRAEHPSVEIKLTTGDAADAMEKVVTGEADLAIAGKPETLPGAVAFSM
                     LENLAVVLIAPALPCPVRNQVSSEKPDWSTVPFIMADQGPVRRRIELWFRRNKISNPM
                     IYATVGGHEAMVSMVALGCGVALLPEVVLENSPEPVRNRVMILERSDEKTPFELGVCA
                     QKKRLHEPLIEAFWKILPNH"
     gene            complement(3388..4932)
                     /gene="ilvA"
                     /locus_tag="JN078_002894"
     CDS             complement(3388..4932)
                     /gene="ilvA"
                     /locus_tag="JN078_002894"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HAY9042032.1"
                     /translation="MADSQPLSGAPEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRL
                     DNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLG
                     VKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPPFDHP
                     MVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA
                     CLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKD
                     LFEDVRAVAEPSGALALAGMKKYIAQHNIRGERLAHILSGANVNFHGLRYVSERCELG
                     EQREALLAVTIPEEKGSFLKFCQLLGGRAVTEFNYRFADAKNACIFVGVRLSRGLEER
                     KEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRF
                     LNTLGTHWNISLFHYRSHGTDYGRVLAAFELGDHEPDFETRLNELGYDCHDETNNPAF
                     RFFLAG"
     gene            complement(4935..6785)
                     /gene="ilvD"
                     /locus_tag="JN078_002895"
     CDS             complement(4935..6785)
                     /gene="ilvD"
                     /locus_tag="JN078_002895"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HAY9042033.1"
                     /translation="MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFT
                     QFVPGHVHLRDLGKLVAEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIAD
                     SVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQII
                     KLDLVDAMIQGADPKVSDSQSDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGN
                     GSLLATHADRKQLFLNAGKRIVELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMG
                     GSTNTVLHLLAAAQEAEIDFTMSDIDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIG
                     ILGELDRAGLLNRDVKNVLGLTLPQTLEQYDVMLTQDDAVKNMFRAGPAGIRTTQAFS
                     QDCRWDTLDDDRANGCIRSLEHAYSKDGGLAVLYGNFAENGCIVKTAGVDDSILKFTG
                     PAKVYESQDDAVEAILGGKVVAGDVVVIRYEGPKGGPGMQEMLYPTSFLKSMGLGKAC
                     ALITDGRFSGGTSGLSIGHVSPEAASGGSIGLIEDGDLIAIDIPNRGIQLQVSDAELA
                     ARREAQEARGDKAWTPKNRERQVSFALRAYASLATSADKGAVRDKSKLGG"
     gene            complement(6850..7779)
                     /gene="ilvE"
                     /locus_tag="JN078_002896"
     CDS             complement(6850..7779)
                     /gene="ilvE"
                     /locus_tag="JN078_002896"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HAY9042034.1"
                     /translation="MTTKKADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYD
                     SHKGPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIRKNNLTSAYIRPLIF
                     VGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAK
                     AGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSAL
                     PGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGEG
                     RCGPVTKRIQQAFFGLFTGETEDKWGWLDQVNQ"
     gene            complement(7799..8062)
                     /gene="ilvM"
                     /locus_tag="JN078_002897"
     CDS             complement(7799..8062)
                     /gene="ilvM"
                     /locus_tag="JN078_002897"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 small subunit"
                     /protein_id="HAY9042035.1"
                     /translation="MMQYQVNVSARFNPETLERVLRVVRHRGFHVCSMNMAAASDAQN
                     INIELTVASPRSVDLLFSQLNKLVDVAHVAICQSTTTSQQIRA"
     gene            complement(8059..9705)
                     /locus_tag="JN078_002898"
     CDS             complement(8059..9705)
                     /locus_tag="JN078_002898"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001012636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 catalytic subunit"
                     /protein_id="HAY9042036.1"
                     /translation="MNGAQWVVHALRAQGVNTVFGYPGGAIMPVYDALYDGGVEHLLC
                     RHEQGAAMAAIGYARATGKTGVCIATSGPGATNLITGLADALLDSIPVVAITGQVSAP
                     FIGTDAFQEVDVLGLSLACTKHSFLVQSLEELPRIMAEAFDVASSGRPGPVLVDIPKD
                     IQLASGDLEPWFTTVENEVTFPHAEVEQARQMLAKAQKPMLYVGGGVGMAQAVPALRE
                     FLATTKMPATCTLKGLGAVEADYPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDR
                     VTGKLNTFAPHASVIHMDIDPAEMNKLRQAHVALQGDLNALLPELQQPLNINDWQQYC
                     AQLRDEHAWRYDHPGDAIYAPLLLKQLSDRKPADCVVTTDVGQHQMWAAQHIAHTRPE
                     NFITSSGLGTMGFGLPAAVGAQVARPNDTVVCISGDGSFMMNVQELGTVKRKQLPLKI
                     VLLDNQRLGMVRQWQQLFFQERYSETTLTDNPDFLMLASAFGIPGQHITRKDQVEAAL
                     DTMLNSDGPYLLHVSIDELENVWPLVPPGASNSEMLEKLS"
     gene            complement(9708..9758)
                     /locus_tag="JN078_002899"
     CDS             complement(9708..9758)
                     /locus_tag="JN078_002899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042037.1"
                     /translation="MNNSTKFCFSTFSTGN"
     gene            complement(9845..9943)
                     /gene="ilvL"
                     /locus_tag="JN078_002900"
     CDS             complement(9845..9943)
                     /gene="ilvL"
                     /locus_tag="JN078_002900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ilv operon leader peptide"
                     /protein_id="HAY9042038.1"
                     /translation="MTALLRVISLVVISVVVIIIPPCGAALGRGKA"
     gene            10295..11815
                     /locus_tag="JN078_002901"
                     /pseudo
     CDS             10295..11815
                     /locus_tag="JN078_002901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418214.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
     gene            complement(11840..12178)
                     /gene="maoP"
                     /locus_tag="JN078_002902"
     CDS             complement(11840..12178)
                     /gene="maoP"
                     /locus_tag="JN078_002902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ori organization protein MaoP"
                     /protein_id="HAY9042039.1"
                     /translation="MAESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGYAFNE
                     LDLGKREPVTEEEKLFVAVCRGEREPVTEAERVWSKYMTRIKRPKRFHTLSGGKPQVE
                     GAEDYTDSDD"
     gene            12297..13136
                     /gene="hdfR"
                     /locus_tag="JN078_002903"
     CDS             12297..13136
                     /gene="hdfR"
                     /locus_tag="JN078_002903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator HdfR"
                     /protein_id="HAY9042040.1"
                     /translation="MDTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLG
                     VNLFTRHRNNIRLTAAGEKLLPYAETLMSTWQSARKEVAHTSRHNEFSIGASASLWEC
                     MLNQWLGRLYQNQDAHTGLQFEARIAQRQSLVKQLHERQLDLLITTEAPKMDEFSSQL
                     LGYFTLALYTSAPSKLKGDLNYLRLEWGPDFQQHEAGLIGADEVPILTTSSAELAQQQ
                     IAMLNGCTWLPVSWARKKGGLHTVVDSTTLSRPLYAIWLQNSDKNALIRDLLKINVLD
                     EVY"
     gene            complement(13232..13307)
                     /locus_tag="JN078_002904"
     tRNA            complement(13232..13307)
                     /locus_tag="JN078_002904"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13272..13274),aa:Trp,seq:cca)
     gene            complement(13316..13392)
                     /locus_tag="JN078_002905"
     tRNA            complement(13316..13392)
                     /locus_tag="JN078_002905"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13356..13358),aa:Asp,seq:gtc)
BASE COUNT         3116 a         3638 c         3479 g         3198 t
ORIGIN      
        1 gtcgtgctca acggaaaaat taatggcaac gcatgtatcg tcgttccatt atcaaccact
       61 cgcgatcatg acaagttaaa tcgtggaatg catgttgaaa tagccagtaa tgttatcaat
      121 ggcctgcaat tctttgatca gcagattcgt tgggccaaag ccgacctggt acaacaagtc
      181 agtcgaaacc gattaaatag agcaaggact tacagagggt atcttaatca atgtttgcca
      241 catgagttgg ttgcagacat acagagggcg gtcatcaagt caatcaatgc catattgctc
      301 ataaattgac aataaaataa ccatccccga taatgacttt gtagcccata gaggccctaa
      361 gttttctccc cttgagggac ctgcgaagcc cggattttcc gggcttttgc catatatgta
      421 ccagcccctc cctgactgac aattacgtta gcatctgcgg atcatgctaa aatcgccgcc
      481 tgacaattat tcactcaagg cacgatcatg gcaaaaacag cagcagcact gcatatcctt
      541 gtaaaagaag agaaactggc tctggatctt ctcgagcaga ttaagaacgg tgccgatttc
      601 ggcaagctgg cgaagaaaca ctccatttgc ccatcaggca aacgcggcgg tgatttaggt
      661 gaattccgcc agggtcagat ggttccggcg ttcgataaag ttgtgttctc ttgtccggta
      721 ctggagccga ccggcccgct gcacacccag ttcggttacc acatcattaa ggtgctgtac
      781 cgtaactaat agcaaggcct tctccaggag aaggccttga gtgttttctc cctctccctg
      841 tgggagaggg tcggggtgag ggcatcagcg cgcacttaac ccgcaactgc aatacgtttc
      901 atatccgtca tatagccgcg cagtttctta cctacctgct caatcgcatg gcagcgaatc
      961 gcttcgttca catcacgcag ttgcgcgtta tctaccgcac cttccggaat agctttaccc
     1021 agatcgcccg gttgcagctc tgccataaac ggtttcagca acggcacaca agcgtaagag
     1081 aacagatagt taccgtactc agcggtatca gagataacca cgttcatttc gtacagacgc
     1141 ttacgggcga tggtgttggc aatcagcggc agctcgtgca gtgattcata atatgcagac
     1201 tcttcaatga tgccggaatc gaccatggtt tcaaacgcca gctcaacgcc cgctttcacc
     1261 atcgcgatca tcagtacgcc tttatcgaag tactcctgct cgccgatttt gccttcatac
     1321 tgcggcgcgg tttcgaaggc ggttttgccg gtctcttcac gccaggtcag cagtttctta
     1381 tcatcgttgg cccagtccgc catcataccg gaggagaatt cgccggagat gatgtcgtcc
     1441 atatgtttct ggaacagggg tgccatgatc tctttcagct gttcagacag cgcgtaagca
     1501 cgcagtttcg ccgggttaga gagacggtcc atcatcaggg tgatgccgcc ctgcttcagc
     1561 gcttcggtga tggtttccca accgaactga attagttttt ctgcgtatgc cggatcggtg
     1621 ccctcttcca ccagcttgtc gaagcacagc agcgagccag cctgcaacat accgcacagg
     1681 atggtttgct cacccatcag gtcagatttc acttccgcaa cgaaggacga ttccagcacg
     1741 cccgcacggt gaccaccggt tgctgccgcc catgctttag cgatcgccat gccttcgcct
     1801 ttcggatcgt tttccgggtg aacggcaatc agcgtcggta cgccgaatcc acgtttgtac
     1861 tcttcacgca cttcggtgcc agggcatttc ggcgcaacca tgactacggt gatgtcttta
     1921 cggatctgct cgcccacttc gacgatgttg aaaccgtgcg agtaacccag cgccgcgccg
     1981 tctttcatca gtggctgtac ggtgcgcact acgtcggagt gctgcttgtc tggcgtcagg
     2041 ttaaccacca aatccgcctg cgggatcagt tcttcgtaag tgcccacttt aaaaccgttt
     2101 tcggtcgctt tacgccagga tgcgcgcttc tcggcaatcg cttctttacg cagagcgtag
     2161 gagatatcga gaccagaatc acgcatgttc aggccctggt tcagcccctg tgcgccacag
     2221 ccgacgataa ccactttttt accctgaagg tagctcgcgc cgtcggcgaa ttcgtcgcgc
     2281 cccataaagc gacatttgcc cagctgtgcc agctgctggc gcaggttcag tgtattgaag
     2341 tagttagcca tggtgattcc tcgtgatgtt gtgcttctta ttgttcggtt cgcgtttgcg
     2401 agattgaatt cactatatga caggaaattt attgcggaaa ttgatatatt cacaacgtca
     2461 cattgcaatt tctgcaacgt caacattgag ggctgctcca ttggatttac gcgatctgaa
     2521 aaccttcctg catctggcgg aaagccgcca ttttggccgc agcgcgcggg cgatgcacgt
     2581 tagcccatcc acgctctcac ggcagattca gcgcctggaa gaagatcttg gtcagccgct
     2641 atttgtgcgc gataaccgca cggtgacgct gactgaagcg ggcgaagagc tgcgcgtttt
     2701 cgcccagcaa acgctgttgc agtatcagca gttgcgccac accatcgatc agcaagggcc
     2761 gtcgctctct ggcgaattac atatcttctg ctcggtgacc gctgcctaca gccatctgcc
     2821 accgattctc gaccgcttcc gcgcggaaca cccgtcggtg gagatcaaac taaccactgg
     2881 tgatgcggca gatgcgatgg aaaaggtagt cactggcgaa gcggatctgg cgattgccgg
     2941 gaaaccggag actctgcccg gcgcagtggc gttttcgatg ctggagaatc tggcagtagt
     3001 gctgattgcg cccgcgctgc cctgcccggt gcgtaaccag gtttcgtcag agaagccgga
     3061 ctggtctaca gtgccgttta tcatggccga tcagggaccg gtacgccgcc gcattgaact
     3121 gtggtttcga cgcaataaaa tcagcaaccc gatgatttac gccacggttg gcgggcatga
     3181 agcgatggta tcgatggtgg cgctcggctg tggcgtggcg ctgttgccgg aagtagtgct
     3241 ggaaaacagc cccgaaccgg tgcgtaaccg cgtgatgatt ttagagcgca gcgatgaaaa
     3301 aacgccgttt gaactgggcg tttgtgcgca gaaaaagcgg ctgcatgagc cgctgattga
     3361 ggcgttctgg aagattttgc cgaaccatta acccgccaaa aagaacctga acgccggatt
     3421 attggtttcg tcgtggcaat cgtagcccag ctcatttagc cgggtttcga aatccggttc
     3481 atggtcgccg agttcgaacg ccgccagtac gcgcccgtag tcggtgccat ggctgcgata
     3541 gtggaacaaa gaaatgttcc agtgcgtacc cagcgtgttg aggaagcgca gcagcgcgcc
     3601 cggtgattcc gggaattcga agctgtagag gcgttcctgc aacggatgtg acggacgccc
     3661 gccgaccata tagcgcacat gcaacttcgc catttcgtcg tcggagagat ccaccacgct
     3721 gtagccgccg tcgttgagca tctgcaaaat ttctttgcgc tcttcgaggc cgcggctcag
     3781 gcgcacgccg acaaagatgc aggcgttttt ggcatcggca aaacggtagt tgaactcggt
     3841 gaccgctcgc ccgccaagca gttggcagaa tttgaggaag ctgccttttt cttccggaat
     3901 ggtcaccgcc aacaacgctt cacgctgttc gcccagttcg cagcgttccg agacgtagcg
     3961 caggccgtgg aagttcacgt tggcaccgga aagaatatgc gccagccgtt cgccgcgaat
     4021 gttgtgctgg gcgatatatt ttttcattcc cgccagcgcc agcgcgccag agggttccgc
     4081 caccgcgcgc acatcttcga ataaatcctt catcgccgca cagatcgcat cactatcgac
     4141 ggtgatgatg tcgtcgagat actcctggca taaacggaag gtttcgtcac cgatgcgttt
     4201 taccgctacg ccttcagcaa atagccctac gcgcggcaga tcaaccggat gacccgcatc
     4261 cagcgctgct ttcaggcagg cggagtcttc cgcttctacg gcgatcactt tgatttgtgg
     4321 catcagttgt ttgatcagca ccgcaacgcc cgccgccaga ccgccgccgc cgactggcac
     4381 aaatacgcgg tcgagatggg cgtcctgctg gagcagttcc agcgccagcg tgccttgccc
     4441 ggcaatcacc atcggatggt cgaacggcgg cacccaggtg aacccctgct gctgtgacag
     4501 ttcgatcgct ttagctttcg cttcgtcaaa gttcgcgcca tgaagcagca cttcgccgcc
     4561 gaatccacgt accgcatcga ctttgatgtc ggcggtggcg gttggcataa cgatcagggc
     4621 cttcacgcct aaccgcgcag aagaaaacgc gacgccctgc gcgtggttac ccgcagaagc
     4681 agtgatcacg ccgtgcgctt tttgttcttc cgtcaggccc gccatcatgg cgtatgcgcc
     4741 gcgcagctta aagctgtgca ctggctggcg atcttcgcgc ttcaccagaa tgacgttatc
     4801 aagacgcgac gacagttttt ccattttttg tagcggcgta acctgcgctg cctcgtaaac
     4861 cggcgcgcgc agcactgctc ttaaatattc ggcaccttcc ggagcaccag acaggggttg
     4921 cgagtcagcc attattaacc ccccagtttc gatttatcgc gcaccgcacc tttgtcggcg
     4981 ctggttgcca ggctggcgta ggcgcgcagg gcaaaggaaa cctgacgttc acggtttttc
     5041 ggcgtccagg ctttgtcacc ccgagcttcc tgcgcttcac gacgcgccgc cagttcggca
     5101 tcgcttacct gtaactgaat gccacggttc gggatgtcga tagcgatcag gtcaccatct
     5161 tcaatcagac caatgctgcc gccgcttgcc gcttccggtg agacgtggcc gatggaaaga
     5221 ccagaggtgc cgccagagaa acgaccgtcg gtgatcagcg cacaggcttt accgagaccc
     5281 attgatttca ggaagctggt tgggtagagc atttcctgca tgccagggcc gcctttcggg
     5341 ccttcatagc ggatcaccac cacatcgccc gcgacaactt tgccaccgag gatcgcttct
     5401 accgcgtcgt cctggctttc gtacactttt gccgggccgg tgaatttgag gatgctgtca
     5461 tcgacgcccg cggttttcac gatgcagccg ttttcagcaa aattaccgta gagcaccgcc
     5521 aggccgccgt ctttgctgta ggcgtgttcc agcgagcgga tacagccgtt tgcgcgatcg
     5581 tcgtccagcg tatcccaacg gcaatcttgc gagaatgcct gggtggtacg gatacccgca
     5641 gggccggcgc ggaacatatt ttttaccgcg tcatcctggg tcagcataac gtcgtattgc
     5701 tccagcgttt gcggcaacgt caggccgagc acgtttttca catcacggtt cagtaacccc
     5761 gcgcgatcca gttcgccgag aataccgata acaccaccag cacggtgaac atcttccata
     5821 tggtatttct gggtgctcgg cgcaacttta cacagctgtg gaaccttgcg ggaaagctta
     5881 tcgatatcac tcatggtgaa gtcgatttcc gcttcctgcg ccgccgccag caggtgaagt
     5941 acggtgttag tcgatccacc catcgcgata tccagcgtca tggcgttttc aaacgccgcc
     6001 ttactggcga tattacgcgg cagtgcactt tcgtcgtttt gctcgtaata acgtttggtc
     6061 aattcaacaa tgcgtttacc agcattaagg aacagctgct tacggtccgc gtgggttgcc
     6121 agcagcgagc cgttgcctgg ctgcgacaaa cccagcgctt cggtcaggca gttcattgag
     6181 ttagcggtaa acatcccgga gcaggaaccg caggttgggc aggcggaacg ttcaacctga
     6241 tcgctctggg agtcagaaac tttcgggtct gcgccctgga tcatcgcatc aaccagatcg
     6301 agtttgatta tctgatcgga cagtttggtt ttcccggcct ccatcgggcc gccggaaaca
     6361 aagatcaccg gaatattcag gcgcagggaa gccatcagca tccccggggt gattttgtcg
     6421 cagttagaga tgcagaccat ggcgtcggcg cagtgggcgt tgaccatata ctcaacggaa
     6481 tcagcgatca gttcgcgaga tggaagtgaa taaagcatcc ccccgtggcc catggcaatc
     6541 ccatcatcca ccgcaatggt gttgaactct ttggcaacgc cgccagccgc ttcaatttgt
     6601 tcggcgacca gtttaccgag atcgcgcaga tggacgtgac ccggtacaaa ttgggtgaac
     6661 gagttcacaa ccgcgataat cggcttgcca aaatcggcgt cggtcattcc ggtggcgcgc
     6721 cacagcgcac gagcacccgc catattacga ccatgagtgg tggtggcgga acggtactta
     6781 ggcatacttt atttactccc agtgtctgtc tcgtaaatgg gacggtgcgt gccgtcccat
     6841 tttttgtatt tattgattaa cttgatctaa ccagccccat ttatcttcgg tttcgccagt
     6901 gaagaggccg aagaaggctt gctgaatgcg tttggtaacc gggccacaac ggccttcgcc
     6961 aacctgaata ccgtctacgc tgcgcactgg cgtgatttct gccgcagtac cggacataaa
     7021 cacttcatcc gccaggtaca gggattcgcg cgacagcacc tgctcacgca cttcaattcc
     7081 cagctctttc gccagtttga tgatggcatc acgggtaata cccggcagcg cggatgaggt
     7141 aaacggtggg gtgaacagca cgccgtcttt cacttcaaac aggttttcac ctgcgccttc
     7201 agagatgtaa ccgttcacat ccagcgcgat accttcctga taaccgtggc ggcgcgcttc
     7261 gctacccacc agcagggaag agaggtagtt accaccggct tttgccgccg tcgggatggt
     7321 gtttggtgct gcgcggttcc aggaggaaac catcgcatcg atcccctgct ccagcgcttc
     7381 tgcgcccaga tacgctcccc acgggaaagc agcgataatc acgtcggttg agtatcccgc
     7441 tggcgggttt actcccatgc caacatcacc gacgaagatc agcggacgga tataggcgct
     7501 ggtgagatta tttttgcgga tcacgtcacg acaagcttcc atcagctcat caatgctctg
     7561 cgaaaccggg aagcgataga ttttggcgga gtcatgcaga cgctgcatat gctcacgatg
     7621 gcggaataca accggtcctt tgtgcgagtc gtagcaacgg atgccttcaa aaaccgaagt
     7681 gccatagtgc agcgcgtgcg acatcacatg caccttcgcg tcttcccagc gaaccatctc
     7741 cccattgaac caaatgtaat cagctttctt cgtggtcatt tttatattcc ttttgcgctc
     7801 aggcgcggat ttgttgtgat gtggttgtgc tctggcagat ggcaacgtgt gcgacgtcca
     7861 ccagtttatt taactgacta aacagtaagt cgaccgaccg tgggctggca acggtcaatt
     7921 cgatatttat attttgtgca tcgctggcgg cggccatatt cattgagcag acgtggaaac
     7981 cacgatgacg caccacgcgt aaaacacgtt ctaaggtttc cggattgaag cgagccgata
     8041 cattgacctg atattgcatc atgataattt ctccaacatt tctgaattac tggcgccagg
     8101 cggcaccagc ggccagacgt tctcaagttc gtcgattgag acatgaagca ggtatggccc
     8161 atcactgttc agcatggtgt cgagtgccgc ttcaacctgg tctttacggg tgatgtgttg
     8221 gccagggatg ccgaaggcgc tggctaacat gaggaaatcg gggttatcag taagggtggt
     8281 ttcgctgtat cgttcctgaa aaaacagttg ctgccattgt cgaaccatcc ctaaccgttg
     8341 gttatcgagt aagacgattt tcaacggtaa ctgcttgcgt tttacggtgc ccagctcttg
     8401 cacattcatc atgaaagagc cgtcaccgga gatacagacg acggtatcgt tcggtcgcgc
     8461 gacttgtgcg ccaaccgccg ctggtaaacc aaaacccata gtgcctaagc cgctggaggt
     8521 gatgaaattt tccgggcgag tgtgggcgat gtgttgcgca gcccacatct ggtgctgccc
     8581 cacatctgtg gtcacgacgc aatccgcagg tttacgatcc gacagttgtt ttaacaacaa
     8641 cggcgcgtag atagcgtcgc cgggatggtc gtaacgccag gcatgttcat cacgcagctg
     8701 cgcgcagtat tgctgccagt cattgatatt taacggctgc tgtaattctg gtaacagagc
     8761 atttaaatca ccttgtaatg ccacatgtgc ctgacgcagc ttgttcattt ctgccgggtc
     8821 gatatccata tggataacgc tggcgtgtgg tgcgaaggtg ttcagtttgc cggtcacccg
     8881 gtcatcaaaa cgtgcaccca cggcgatcag caagtcgcac tcctgcaccg cgaagttcgc
     8941 cgctttggtg ccatgcattc ccagcatgcc cagatagtac ggataatctg cttcaactgc
     9001 gcccagccct ttcagcgtgc aggtggcagg catttttgtg gtagcgagaa attctcgtaa
     9061 agcaggaact gcctgcgcca tacccacgcc accaccaacg tacagcatcg gtttttgcgc
     9121 ttttgccagc atctggcgcg cttgctcaac ttcggcatgt gggaaagtca cttcgttttc
     9181 aacggtggtg aaccacggtt ccaggtcacc gctggctagc tggatatctt ttgggatatc
     9241 gaccagaacc ggaccaggac gacctgagct ggcaacgtcg aatgcttcag ccataatgcg
     9301 cggcaactct tccagcgact gcaccagaaa gctgtgcttg gtacaggcta acgacaatcc
     9361 caggacatcc acttcctgaa atgcatcagt gccgataaac ggtgcggaca cttgaccggt
     9421 gatggcaaca acagggatag aatctaacag tgcgtccgca agcccggtta tcaggttggt
     9481 tgcgcccgga ccagacgtgg cgatacatac gccagttttg ccggtagcac gggcataacc
     9541 gatagccgcc attgccgcac cctgctcatg tcggcacagc aagtgctcca cgccgccgtc
     9601 atacaatgca tcgtaaaccg gcataattgc gccacccgga taaccgaaaa cggtgttcac
     9661 accctgtgcc cgcaacgcat gtaccaccca ctgtgcgcca ttcatagtta gttccccgtg
     9721 ctgaatgttg agaaacagaa ttttgtgctg ttattcattg tctgctcctc ggttatgttt
     9781 ttaaggtcaa aaaaaacccc cggacctttc ggtgcggggg tcttagttcg ttaaggcttg
     9841 atttctaagc ctttcctcgt ccaagtgcag ccccgcacgg tgggataata atcaccacca
     9901 cgctaatcac gaccaggcta atcactcgta gaagggctgt cattttgtct tttcttgcat
     9961 cttgttcgaa ggaatgccta aagagttacc ataggttttg taaatagtac aagatatttt
    10021 ttggccgatt tttatgatgc gtttaataat ttcaatataa gttgttgttt tttaaaaata
    10081 aaatagtgag taaaaaaatt caatttcagt atgaatgttg ttcccttcct cgtagttcat
    10141 cctttgtccg ctgcattttt gcgagcatca ttccaccgcc agaacaactc aacttcactt
    10201 gcacaaataa acaggaatca gccactaaaa ttcacgaatt agcgggctac agcagcgata
    10261 tcttatgcac ataatggtga ctcaaggagg gcttatgtca ctgtcaattg ttcatacccg
    10321 cgcagccctg ggagtaaatg cgcccccgat cactgttgag gtacatatca gtaaaggtct
    10381 acccggctta acgaaggtgg gcttaccaga aacaacggta aaagaagctc gcgatcgcgt
    10441 gcgcagcgcc attatcaata gcggatatga atatccggcg aaaaaaatca ccatcaacct
    10501 ggctccagct gatctgccaa aagaaggggg acgatatgat ttacctatcg ccattgcgtt
    10561 gctggcggcc tcagaacagc ttacagccaa taagttagat gaatatggat tagtcggaga
    10621 actggcgctt acaggcgctc tgcgtggcgt tcccggcgca atctccagta caactgaagc
    10681 tattaagtcg ggcagaaaaa ttatcgtcgc gaaagataac gaagatgaag tggggctaat
    10741 taacggtgaa ggatgcctga tagccgatca tctgcaagct gtctgtgcgt ttctggaagg
    10801 taagcacgct ctcgaacgcc cgaaaccaac tgatgcagta tcccgggcgc tacaacatga
    10861 tctcagtgat gttatcggtc aggaacaagg aaagcgagga ctggaaatta ccgccgctgg
    10921 cgggcacaac cttttactga ttgggccgcc gggaacaggt aaaacaatgc tcgccagccg
    10981 tattaatggc ctgttgccag atttaagcaa tgaagaggca ctggagagtg ctgcgatatt
    11041 aagtctggta aatgctgaat cagtacaaaa acaatggcgg cagcgcccgt tccgctcacc
    11101 tcatcacagt gcatcgttaa ctgcgatggt aggcggtggc gcaattccag ggcccggtga
    11161 aatttcgctg gcgcataacg gcgtgctttt tcttgatgag ttacctgaat ttgaaaggcg
    11221 tacactggat gccttgcgag agccgattga atccgggcag atccatcttt cacgcacgcg
    11281 agcaaaaata acctatccag cccgtttcca gcttgtcgcg gcgatgaatc ccagccctac
    11341 cggacattat cagggaaacc ataaccgctg cacaccagag caaacgctgc gttatctcaa
    11401 ccgactctct ggtccctttc tcgaccgctt cgatctctca ctggagatcc cattaccgcc
    11461 tcccggtatt ttgagtaaaa cggtagtgcc gggagaaagc agcgccaccg ttaaacaacg
    11521 cgtaatggcc gccagagagc gccaatttaa gcggcagaat aaactgaacg cctggctgga
    11581 tagtccggaa atacgccaat tctgcaaact tgagagcgaa gatgcgatgt ggctggaaga
    11641 aacgctgatc catctggggt tatcgattcg tgcctagcag cggttattga aagttgcacg
    11701 aaccattgct gatattgatc agtctgacat tatcacacgt caacatttgc aggaggcagt
    11761 tagctatcga gcgattgacc gtttgctcat ccatctgcag aaactactga cataaaaaaa
    11821 gggcatttcg ccctttttat taatcgtcag aatcggtgta gtcttcagca ccttcaacct
    11881 gcggtttacc gccggaaagg gtgtgaaaac gttttggacg cttaatacgc gtcatatact
    11941 tggaccacac gcgttctgct tctgtcactg gctcacgttc gccacggcat actgctacga
    12001 agagtttctc ttcctcggta accggctcgc gtttgccaag atccaactca ttgaaggcat
    12061 aaccatgacg ctcaagcagt tgtgcctctt tgatggtgaa atcaccatga cgagagaatc
    12121 cacgtggata atgtttattg tcgaaatatc gattagtcgt cgtaaagctt tccgccatcc
    12181 tgcacgctcc taattctttg accgagctag ttatggcgcg gagtattagt tacgcttgac
    12241 agagtgtaaa acaaaacatt taaatcataa cgacaaataa ttttgcggag agcactgtgg
    12301 atacggaatt gttaaaaact ttcctggaag ttagccgaac gcgtcacttt ggtcgagcgg
    12361 ctgaatcgct ctatctgacc cagtcagcag tgagctttcg aatcagacaa ctggaaaatc
    12421 aactgggtgt gaaccttttc acccgccaca gaaacaatat ccgtttaacc gctgccggtg
    12481 aaaaactact gccttatgca gaaacgctca tgagcacctg gcagtccgcc cgcaaggagg
    12541 tggcgcatac ctcacgacat aacgagtttt ctatcggtgc cagcgcctca ttgtgggaat
    12601 gtatgcttaa tcagtggctg ggacgtttgt atcaaaatca ggatgcccat acaggcttac
    12661 agttcgaagc gcgaattgcc caacggcagt ctctggtaaa acagctgcat gaacgccagc
    12721 ttgatcttct tattaccact gaagcgccca aaatggacga atttagtagt cagttgctgg
    12781 gatatttcac tttagcgctt tataccagtg ccccttcaaa actaaaggga gatcttaatt
    12841 atctgcgact tgagtggggg ccagattttc aacagcatga ggcaggtttg atcggtgctg
    12901 acgaagtgcc cattctgaca accagttctg ctgaactggc acagcaacag attgcgatgc
    12961 ttaatggttg cacctggcta cccgtcagct gggcgcgtaa aaaaggcggc ctgcataccg
    13021 ttgtcgatag cacaacactt tcacggccgc tttatgccat atggctgcaa aatagcgata
    13081 aaaatgcgtt gattcgcgat cttttgaaaa ttaacgtgct ggatgaagtg tattaatatg
    13141 aatggctggc aaggatgccg gtagaaggat ttacttcgga gagggttatt tcagataaaa
    13201 aaaatcctta gctttcgcta aggatgattt ctggcagggg cggagagact cgaactccca
    13261 acacccggtt ttggagaccg gtgctctacc aattgaacta cgcccctaat tagggtggcg
    13321 gaacggacgg gactcgaacc cgcgaccccc tgcgtgacag gcaggtattc taaccgactg
    13381 aactaccgct ccaccgaatt cttttacaac caccggtttt atgaccggct t
//
LOCUS       DADMJB010000115        13367 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.115, whole genome shotgun sequence.
ACCESSION   DADMJB010000115 DADMJB010000000
VERSION     DADMJB010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13367
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.115"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(171..1094)
                     /locus_tag="JN078_002906"
     CDS             complement(171..1094)
                     /locus_tag="JN078_002906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310535.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY9042041.1"
                     /translation="MNNLPLLNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLE
                     QTLNVVLLHRTTRRVTITEEGERIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISS
                     FGFGRQVVAPALSALAKAYPQLELRFDVEDRLVDLVNEGVDLDIRIGDDIAPNLIARK
                     LATNYRILCASPEFIAQHGAPKHLTDLSALPCLVIKERDHPFGVWQLRNKEGHHAIKV
                     TGPLSSNHGEIVHQWCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPANVWAVYVS
                     RLATSAKVRITVEFLRQYFAEHYPNFSLEHA"
     gene            1197..2282
                     /gene="dmlA"
                     /locus_tag="JN078_002907"
     CDS             1197..2282
                     /gene="dmlA"
                     /locus_tag="JN078_002907"
                     /EC_number="1.1.1.83"
                     /EC_number="1.1.1.85"
                     /EC_number="1.1.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional
                     D-malate/3-isopropylmalate/tartarate dehydrogenase"
                     /protein_id="HAY9042042.1"
                     /translation="MMKTMRIAAIPGDGIGKEVLPEGIRVLQAAAERWGFDLSFEQMG
                     WASCEYYSHHGKMMPDDWHEQLSRFDAIYFGAVGWPDTVPDHISLWGSLLKFRREFDQ
                     YINLRPVRLFPGVPCPLAGKQPGDIDFYVVRENTEGEYSSLGGRVNEGTEHEVVIQES
                     VFTRRGVDRILRYAFELAQSRPRKTLTYATKSNGLAISMPYWDERVEAMAENYPEIRW
                     DKQHIDILCARFVMQPERFDVVVASNLFGDILSDLGPACTGTIGIAPSANLNPERTFP
                     SLFEPVHGSAPDIYGKNIANPIATIWAGAMMLDFLGNGDERFQQAHNGILAAIEEVIA
                     HGPKTPDMKGNATTPQVADAICKIILR"
     gene            2532..4142
                     /gene="yeaV"
                     /locus_tag="JN078_002908"
     CDS             2532..4142
                     /gene="yeaV"
                     /locus_tag="JN078_002908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310537.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter YeaV"
                     /protein_id="HAY9042043.1"
                     /translation="MMSNVKKKDVPLISISLVAILFIAAALSLFPQQSADAANAIYTF
                     VTRTLGSAVQVLVLLAMGLVIYLATSKYGNIRLGEGKPEYSTLSWLFMFICAGLGSST
                     LYWGVAEWAYYYQTPGLNIAPRSQQALEFSVPYSFFHWGISAWATYTLASLIMAYHFH
                     VRKNKGLSLSGIIAAITGVRPQGPWGKLVDLMFLIATVGALTISLVVTAATFTRGLSA
                     LTGLPDNFTVQAFVILLSGGIFCLSSWIGINNGLQRLSKMVGWGAFLLPLLVLIVGPT
                     EFITNSIINAIGLTTQNFLQMSLFTDPLGDGSFTRNWTVFYWLWWISYTPGVAMFVTR
                     VSRGRKIKEVIWGLILGSTVGCWFFFGVMESYAIHQFINGVINVPQVLETLGGETAVQ
                     QVLMSLPAGKLFLAAYLGVMIIFLASHMDAVAYTMAATSTRNLQEGDDPDRGLRLFWC
                     VVITLIPLSILFTGASLETMKTTVVLTALPFLVILLVKVGGFIRWLKQDYADIPAHQV
                     EHYLPQTPVEALEKTPVIPAGTVFKGDN"
     gene            4174..5298
                     /gene="yeaW"
                     /locus_tag="JN078_002909"
     CDS             4174..5298
                     /gene="yeaW"
                     /locus_tag="JN078_002909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carnitine monooxygenase subunit YeaW"
                     /protein_id="HAY9042044.1"
                     /translation="MSNLSPDFVLPENFCANPQEAWTIPARFYTDQNAFEHEKENVFA
                     KSWICVAHSSELANANDYVTREIIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSGEGK
                     AKNVITCPYHAWAFKLDGNLAHARNCENVANFDSDKAQLVPVRLEEYAGFVFINMDPN
                     ATSVEDQLPGLGAKVLEACPEVHDLKLAARFTTRTSANWKNIVDNYLECYHCGPAHPG
                     FSDSVQVDRYWHTMHGNWTLQYGFAKPSEQSFKFEEGTDAAFHGFWLWPCTMLNVTPI
                     KGMMTVIYEFPVDSETTLQNYDIYFTNEELTDEQKSLIEWYRDVFRPEDLRLVESVQK
                     GLKSRGYRGQGRIMADSSGSGISEHGIAHFHNLLAQVFKD"
     gene            5354..6319
                     /gene="yeaX"
                     /locus_tag="JN078_002910"
     CDS             5354..6319
                     /gene="yeaX"
                     /locus_tag="JN078_002910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carnitine monooxygenase subunit YeaX"
                     /protein_id="HAY9042045.1"
                     /translation="MSDYQMFEVQVSQVEPLTEQVKRFTLVATDGKPLPAFTGGSHVI
                     VQMSDGDNQYSNAYSLLSSPHDTSCYQIAVRLEENSRGGSRFLHQQVKVGNRLTISTP
                     NNLFALIPSARKHLFIAGGIGITPFLSHMAELQHSDVDWQLHYCSRNPESCAFRDELV
                     QHPQAEKVHLHHSSTGTRLELARLLADIEPGTHVYTCGPEALNEAVRSEAARLDIAAD
                     TLHFEQFAIEDKTGDAFTLVLARSGKEFVVPEEMTILQVIENNKAAKVECLCREGVCG
                     TCETAILEGEADHRDQYFSDEERASQQSMLICCSRAKGKRLVLDL"
     gene            complement(6373..7488)
                     /gene="rnd"
                     /locus_tag="JN078_002911"
     CDS             complement(6373..7488)
                     /gene="rnd"
                     /locus_tag="JN078_002911"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310540.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HAY9042046.1"
                     /translation="MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFD
                     GEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQIL
                     SAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITA
                     KLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLAD
                     WRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLTLVE
                     KAQTLPEEALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLL
                     NWHWKLKPQNNLPELISGWRGELMAEALHNLLQEYPQ"
     gene            complement(7569..9254)
                     /gene="fadD"
                     /locus_tag="JN078_002912"
     CDS             complement(7569..9254)
                     /gene="fadD"
                     /locus_tag="JN078_002912"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase FadD"
                     /protein_id="HAY9042047.1"
                     /translation="MKKVWLNRYPADVPTEINPDRYQSLVDMFEQSVARYADQPAFVN
                     MGEVMTFRKLEERSRAFAAYLQQGVGLKKGDRVALMMPNLLQYPVALFGILRAGMIVV
                     NVNPLYTPRELEHQLNDSGASAVVIVSNFAHTLEKVVDKTAVQHVILTRMGDQLSTAK
                     GTVVNFVVKYIKRLVPKYHLPDAISFRSALHNGYRMQYVKPELVPEDLAFLQYTGGTT
                     GVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIELG
                     GQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGG
                     MPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLV
                     DDDDNEVPPGQPGELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRI
                     VDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPSL
                     TEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNKA"
     gene            complement(9459..10040)
                     /gene="yeaY"
                     /locus_tag="JN078_002913"
     CDS             complement(9459..10040)
                     /gene="yeaY"
                     /locus_tag="JN078_002913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Slp family lipoprotein YeaY"
                     /protein_id="HAY9042048.1"
                     /translation="MAVQKNVIKGILAGTFALMLSGCVTVPDAIKGRSPTPQQDLVRV
                     MSAPQLYVGQEARFGGKVVAVQNQQGKTRLEIATVPLDSGARPTLGEPSRGRIYADVN
                     GFLDPVDFRGQLVTVVGPITGAVDGKIGNTPYKFMVMQVTGYKRWHLTQQVIMPPQPI
                     DPWFYGGRGWPYGYGGWGWYNPGPARVQTVVTE"
     gene            complement(10080..10775)
                     /gene="tsaB"
                     /locus_tag="JN078_002914"
     CDS             complement(10080..10775)
                     /gene="tsaB"
                     /locus_tag="JN078_002914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HAY9042049.1"
                     /translation="MRILAIDTATEACSVALWNDGTVNAHFELCPREHTQRILPMVQD
                     ILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMAQGA
                     WRKNGATRVLAAIDARMGEVYWAEYQRDENGIWRGEETEAVLKPELVHERMQQLSGEW
                     VTVGTGWQAWPDLGKESGLVLRDGEVLLPATEDMLPIACQIFAEGKTVAVEHAEPVYL
                     RNNVAWKKLPGKE"
     gene            complement(10833..12743)
                     /locus_tag="JN078_002915"
     CDS             complement(10833..12743)
                     /locus_tag="JN078_002915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HAY9042050.1"
                     /translation="MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVE
                     AGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKG
                     RSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPL
                     VTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPE
                     ADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLA
                     QSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDA
                     AFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSW
                     IFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVPRNLPQTNQPGSAR
                     QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV
                     SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD
                     EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA
                     RAVRFLAIPSSR"
     gene            12875..13219
                     /locus_tag="JN078_002916"
     CDS             12875..13219
                     /locus_tag="JN078_002916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HAY9042051.1"
                     /translation="MTIVRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLA
                     QIDAVLEKQGSNKSSILDATIFLADKNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNP
                     KYKVEIKIVAAV"
BASE COUNT         3198 a         3555 c         3335 g         3279 t
ORIGIN      
        1 accagatagg tccagtaatt cagaaccccg tattcagcga acacattaac ctctttaatt
       61 atctttcgat catgcgcgat taaaggtgaa tatgctaacc aatctgtagc ggcttagaaa
      121 ggagaaaatc aggttttaac ccgatatcaa cccgataatt gaatcattaa tcaggcatgc
      181 tccagtgaaa aattcgggta gtgctcggca aaatactggc gtaaaaattc taccgttatc
      241 cgcactttcg ctgacgtcgc cagccttgaa acataaacgg cccagacgtt cgctggctgg
      301 taatattccg gtagcacttg cactaaatga ccactggcaa tgttttcgct aacatcccac
      361 caggaacgca gagcaatccc ctgcccatcg agacaccact gatggacaat ttctccatga
      421 ttagacgaca gtgggccggt gactttaatc gcatggtggc cttctttatt gcgtaattgc
      481 cagacaccaa aaggatgatc gcgctcttta atgaccaggc acggcaatgc agaaagatcg
      541 gttaaatgtt tcggcgcgcc atgttgcgca ataaattccg gcgacgcgca gagaatgcgg
      601 taattggtcg ccagtttgcg ggcgattaaa ttaggggcga tgtcatcgcc aatgcgaata
      661 tcgagatcga caccttcatt gaccaaatcg accagccggt cttccacatc aaaacgtaat
      721 tccagttgcg gatacgcctt cgccagcgct gataacgccg gagccaccac ctgtcgtcca
      781 aaaccaaagc tgctgataat acgcagcatc ccctgtggca cctgacgcac gtcagaaagt
      841 tcgtccatca tctgaccgac atcctgcaaa atccgctgcg cccattcata aatccgctct
      901 ccttcttcgg taatggtgac gcggcgggtg gtgcggtgta acaacaccac gtttagcgtt
      961 tgctccagca aggcgatgcg cttgctgacg aacgccggtg aaacgcccag ttcttccgcc
     1021 acggcggcaa aaccagcccg acgagccacc agcataaaga cgcgcaaatc attcagcagc
     1081 ggtaaattat tcatgattcg tgttttatgt ttcaccagtt acggggatta attccttttc
     1141 cgtcaattat aggatggtga tgttgtcaat tttgatggtc aggaagtgag aacccaatga
     1201 tgaaaacgat gcgtattgct gcgatcccgg gagacgggat tggtaaagaa gtccttcctg
     1261 aagggattcg cgtgttacag gctgccgctg agcgctgggg cttcgacttg agttttgagc
     1321 aaatggggtg ggcgagctgc gagtattaca gccatcacgg taaaatgatg ccggacgact
     1381 ggcatgagca acttagccgt ttcgacgcca tctattttgg tgccgtcggc tggccggata
     1441 ccgttccgga ccatatttcg ttgtggggtt cgctgctgaa atttcgtcgt gaattcgacc
     1501 agtacatcaa cctgcgcccg gttcgtctct ttcctggcgt tccctgcccg ctggcgggaa
     1561 aacagcctgg cgacatcgat ttttacgtgg tcagggaaaa caccgaaggc gaatattcct
     1621 cgctcggcgg tagagtgaat gaaggtacag agcatgaagt cgtcattcag gaatcggtat
     1681 ttacacgtcg tggtgtcgat cgcattttgc gttatgcctt cgaacttgcg caaagccgcc
     1741 cacgtaagac gctaacttat gccactaaat cgaacggttt agccatcagc atgccgtact
     1801 gggatgagcg agtggaagca atggccgaga attacccgga gatccgctgg gacaagcagc
     1861 atattgatat tctctgcgcg cgttttgtga tgcagccgga acgcttcgat gtggtggtgg
     1921 cgtccaattt gtttggcgat atcctttccg atcttggccc ggcctgcacc ggcaccattg
     1981 gcattgcccc atccgccaac ctgaatccgg aacgcacttt cccgtcgctc ttcgagcctg
     2041 tccacggttc cgcgccggat atctacggga aaaatattgc taaccctatc gccacgattt
     2101 gggccggggc aatgatgctc gattttctcg gcaatggcga tgagcgtttc cagcaagcgc
     2161 ataacggtat tctggcagca attgaagaag tgattgctca cgggccgaaa acacctgata
     2221 tgaaaggcaa tgccaccacg ccacaggttg ccgacgcgat ttgcaaaatt attttgcgtt
     2281 aaggtcaaac cagtttattt gaaccgcgtc actgacgcgg ttttttattc gttctttgca
     2341 gtaaataacc tgcgtcattt caccttttat tgtttccgtt tcgtgtttta tggctttccg
     2401 cattcttaat tgtttaattt atgtaatatt caaataatca atttgttaaa cacaacatac
     2461 aactcattac cctgcaaata attacaactg gcaaaagcca gagacgggct tttatgccca
     2521 ggagatgact catgatgagc aatgttaaga aaaaagatgt gccgctgata agcatcagcc
     2581 tggtggccat tcttttcatc gcagctgcat taagcctttt cccacaacaa tcggccgacg
     2641 cggccaacgc aatatacact tttgttacgc gtacgttagg ttccgccgta caggtattgg
     2701 ttttgctggc aatgggactg gtgatttatt tagccaccag taaatacggc aatattcgtc
     2761 ttggcgaagg aaaaccggaa tacagcacgc tctcctggct gtttatgttt atttgtgccg
     2821 gtttaggttc ttctacgctt tattgggggg ttgctgaatg ggcctattat tatcaaacac
     2881 ctggattaaa tatcgcaccg cgttcacaac aggcactcga atttagcgtt ccctactctt
     2941 tcttccactg gggcatcagc gcctgggcaa cttatacgct ggcctcatta atcatggctt
     3001 atcactttca tgtgcggaaa aacaaaggtc tgagcctttc cggcattatt gctgctatta
     3061 ccggcgttcg cccgcaaggc ccatggggaa aactggttga tttgatgttc ctgatcgcca
     3121 ctgtcggcgc actgactatt tcccttgttg tcaccgcagc aacctttact cgtggacttt
     3181 ccgcactgac aggtttaccc gacaacttca ccgtgcaggc atttgtgatc ctgctttctg
     3241 gcggcatttt ttgcctaagc tcgtggattg gtatcaacaa cggtttgcaa cgtctgagca
     3301 aaatggttgg ctggggcgcg ttcctgctgc cattactggt gctgattgtc ggcccaaccg
     3361 aatttattac caacagcatc atcaatgcca tcggcctgac cacgcaaaac ttcctgcaaa
     3421 tgagcttatt caccgatccg cttggcgatg gttcatttac ccgcaactgg accgttttct
     3481 actggctgtg gtggatctca tacacccctg gcgtagcaat gtttgtcacc cgcgtttccc
     3541 gcggtcgtaa gattaaagaa gttatctggg gactgatcct cggcagcacc gtcggttgct
     3601 ggttcttctt cggcgtaatg gaaagctatg ccattcatca gtttatcaat ggcgtaatca
     3661 acgtcccaca ggtgctggaa acactgggcg gcgaaacagc tgtacagcaa gttctgatgt
     3721 cgttgccagc cggtaaattg ttcctcgccg catacctggg cgtgatgatt attttccttg
     3781 cctcgcatat ggatgcagtg gcctacacca tggcggcgac cagtacgcgt aatctccagg
     3841 aaggtgacga tcctgaccgt gggctgcgtc ttttctggtg cgtggtgatc actctgatcc
     3901 cgctttccat cttgtttacc ggtgcttcgc tggaaacgat gaaaaccacc gtcgtgctca
     3961 cagcccttcc cttcctcgtc attttactgg tgaaagtcgg cggatttatt cgctggctga
     4021 aacaggatta cgccgacatt ccggctcatc aagttgaaca ttatctcccg cagacaccgg
     4081 ttgaagccct ggaaaaaaca ccagtgatcc ctgcgggaac cgtattcaaa ggcgacaact
     4141 gagcgccatc atcctaacga taaaggtatc cctatgagca atctgagccc tgactttgta
     4201 ctacccgaaa atttttgcgc taacccgcaa gaggcgtgga ccattcctgc ccgtttttat
     4261 accgatcaga acgcgtttga acacgaaaaa gagaacgtct tcgccaaaag ctggatttgc
     4321 gtcgctcaca gcagcgaact ggcgaatgcc aatgattatg tgacgcgtga gatcattggc
     4381 gaaagcatcg tgctggtacg cggtcgtgat aaggttttgc gcgcgttcta taacgtgtgt
     4441 ccgcaccgtg gtcatcagtt gttgagcggt gaaggaaaag caaaaaatgt gattacctgc
     4501 ccgtatcacg catgggcatt caaactcgat ggcaatctgg cccatgcacg taactgcgaa
     4561 aacgtcgcca atttcgatag cgacaaagcg caactggttc cggtgcgtct ggaagaatat
     4621 gccggattcg tcttcatcaa catggacccc aacgccacca gcgtagaaga tcagttaccc
     4681 ggtctgggcg cgaaagtgct ggaagcctgc ccggaagtcc acgatctgaa actggcggcc
     4741 cgctttacca cccgcacgtc tgccaactgg aagaacattg tcgataacta tctcgagtgc
     4801 tatcactgtg gtccggcgca tccaggtttc tccgactccg tacaggttga tcgttactgg
     4861 cacaccatgc acggtaactg gacgctgcaa tacggtttcg ccaaaccgtc cgaacagtcg
     4921 tttaaatttg aagagggtac ggatgcggca ttccacggtt tctggctgtg gccgtgcacg
     4981 atgctgaacg tcaccccgat caaagggatg atgacggtca tttatgaatt cccggtggat
     5041 tctgaaacta ccctgcaaaa ctacgatatt tacttcacca atgaagagtt aaccgacgag
     5101 caaaaatcgc tgattgagtg gtatcgcgat gtgttccgtc cggaagattt acgtctggtt
     5161 gaaagcgtac agaaagggct gaaatcgcgt ggctatcgtg gtcaggggcg catcatggcc
     5221 gacagtagcg gtagtggcat ttccgaacat ggtatcgccc atttccataa tctgctggcg
     5281 caggtgttta aggactaatg acatcggcgg cggtattttc cgctgctggg ctgatttttg
     5341 atggagtaca gcaatgtcag actatcaaat gtttgaagta caggtgagcc aggttgaacc
     5401 ccttaccgaa caggtgaaac gcttcacgct ggtggcaacc gatggcaaac cgctgcctgc
     5461 gttcaccgga ggaagtcacg tcattgtgca gatgagcgat ggtgataacc agtacagcaa
     5521 tgcgtattca ctactgagtt cgccgcatga cacctcttgt tatcagattg ccgttcggct
     5581 ggaggaaaac tcgcgcggcg gttcccgctt tttgcatcag caggtaaaag tgggcaatcg
     5641 gttaacgatt tcaacgccta ataacctgtt tgcgctaatt ccctcagcca gaaagcatct
     5701 gtttatcgcg ggcggtattg gtatcacccc tttcctgtcg cacatggcag agctgcaaca
     5761 cagcgacgtc gactggcagc tacattactg ctcgcgaaat ccagaaagtt gcgcatttcg
     5821 tgatgagcta gtccagcatc cgcaggctga gaaagttcac ttgcatcact catcaaccgg
     5881 aacacgactg gaattagcgc gattattggc ggatatcgaa cctggcacac acgtttatac
     5941 ctgtggtccc gaggcgctaa atgaagcggt aagaagtgaa gctgcgcgtc tggacatcgc
     6001 cgccgatacg ctgcactttg agcaatttgc tatcgaagac aaaaccggcg atgcctttac
     6061 cctggtgctt gcccgttccg gaaaagagtt tgtggtgccg gaagagatga ctattttgca
     6121 ggttattgaa aataataaag ccgcgaaagt ggaatgttta tgtcgtgaag gggtatgcgg
     6181 aacctgcgaa acagcaatac tggaaggtga agctgaccat cgggatcagt attttagcga
     6241 tgaagagcgt gccagccagc aaagtatgtt gatctgttgt tcgcgtgcga agggtaaacg
     6301 cctggtgttg gatttgtagt ttgccaaagc cggatgtggc gctgagcgcg cccagtccgg
     6361 cttcggaaga ttttactgcg gatattcctg caataaattg tgtaatgctt ccgccatcag
     6421 ctcaccacgc cagccggaaa tcagctccgg caaattgttc tgcggtttca gtttccagtg
     6481 ccagttcagc agttggttga tttgccgacg cgatgccagc aattcggcgc tgatcttatg
     6541 cgtttcgctc acgtcagtaa tcagcgactt aatcgcttta aacgctttac gataaccagg
     6601 catgtccatc aggttaagca tcggctgcgg taaggcctct tccggcaatg tctgcgcttt
     6661 ttccaccagc gtcagcagcg ttttaccgtg aaagcggatt tcgctaccgg ataaacccag
     6721 gctgtccagt tcgcctaaac ttcccggcat ataacgcgcg accgaccaca aatgctcttc
     6781 acgcacgaca aagttcaccg ccagatcacg ctctcgcgcc ttgcgcagtc gccagtcggc
     6841 taacagttgc agacaggcca gttggcgtgt gcgtaactgc caggcattgg tgatatcacg
     6901 ccaggcatct tccggcgcaa cgacttcctg acgacgcatt tgcatcaggc ggcattcatc
     6961 cagcgccgca ggtagccagc cggaggcctc cgtttctacc ataagcttgg cggtgatcgg
     7021 taacagatac cagacatccg ccgctgcgta ttcacactga cgttcggtca gcggtctggc
     7081 cagccagtcg gtgcgcgatt cactcttgtc cagcgtaacg ccggaatact cttccaccat
     7141 ggaagcgaaa ccccatgaca tcgggcgtcc gcagaaggca gaaaggattt gcgtgtcaat
     7201 caagggttgt ggtaattcgc caaagacatt gaggaacact tccagatctt cactgcctgc
     7261 atggagaaat tttgtgatgg acggatcgcg caggatcgct ttcagcggtg accagtcggt
     7321 gatcccgaga ggatcaatta gcgccagatg ctcgccatcg aaaagttgaa tcaaccccag
     7381 ctgcgggtaa taagtgcgcg tacgaacaaa ttcagtatcc agggctatcg ccggaaaggc
     7441 acggacggct tcacacaaag aagccagcgc atcgtccgtg gtaatcattt ggtaattcaa
     7501 attgttttct ctttagtggg cgtcaaaaaa acgccggatt aaccggcgtc tgacgactga
     7561 cttaacgctc aggctttatt gtccactttg ccgcgcgctt cgtcacgtaa ttctcgtcgc
     7621 aaaatttttc cgacgttaga tttcggtaac tcatcacgaa actccaccag cttcggtact
     7681 ttgtatcccg tgagctgacg gcggcaaaaa gtcaccagtg actcttcggt aagcgatgga
     7741 tcttttttca ctacgaagat tttcaccgct tcaccactgg agccggaagg tacgccaaca
     7801 gccgcgactt cctgtacgcc aggatgctgc atgacgacat cttcaatctc gttgggatag
     7861 acgttaaaac cggaaaccag aatcatgtct tttttacgat cgacaatgcg caggaatcct
     7921 tcttcatcca ttaccgcgat gtcgccggtg tgtaaccagc catttttgat gatttcatcg
     7981 gtagcatcgg gacgctgcca gtaacccagc atcacctgcg gtcctttgac acaaagctca
     8041 cccggttgac ctggtggtac ttcattatca tcatcatcca ccagtttggc ttccgtcgac
     8101 ggcaccggca aaccgatgct accactatga taatcaatat catatgggtt aacgctgacc
     8161 agcggcgcac actcggtaag gccatagcct tccagcagat actgtccggt cagtttcacc
     8221 caacgctctg ccaccacttg ctgcactggc atcccaccgc ctgcggaaag atgcagactg
     8281 gagaaatcca gctgctggaa ctctttattg ttcagcaacg cattgaacaa ggtgttaacg
     8341 ccagtgatag cggtaaacgg atatttcgct aactctttta ccaaccctgg aatatcacgc
     8401 gggttagtga taagcaggtt ctgcccaccc agttcgataa acagcaggca gttaatggtc
     8461 agggcaaaaa tgtgatacag cggcagtgcc gttactacca gttctttacc tggatgcagc
     8521 aacggcccat aggtggcgtt gacctgttcc aggttcgcca gcatattgcg gtgagtcagc
     8581 atcgcgcctt tcgccacacc tgtggtgccg ccggtgtatt gcaggaaggc taaatcttcc
     8641 ggcaccagtt cgggtttgac gtactgcatc cggtagccgt tatgcagtgc gctacgaaat
     8701 gaaatggcat ctggcagatg gtatttcggc accaaacgct tgatgtattt aacaacgaaa
     8761 ttgactaccg tgccttttgc cgtagatagc tgatcgccca tacgggtcag aattacgtgc
     8821 tgaacggcgg ttttatcaac cactttttcc agtgtgtgag caaagttaga cacgataaca
     8881 accgccgatg cgccgctatc gttaagctga tgctcaagct cacgcggggt atacaacggg
     8941 ttaacgttta cgacgatcat cccggcacgc aaaatgccaa acagcgccac cggatattgc
     9001 aataaattag gcatcatcaa cgcaacgcga tcgcctttct tcagccccac cccttgttgc
     9061 aaataagcgg caaacgcgcg actgcgttct tccagcttgc ggaaggtcat cacctccccc
     9121 atattcacaa acgcaggctg atcggcgtag cgcgcgaccg actgctcaaa catatctacc
     9181 agagattgat aacggtcagg gttgatctcc gtcggaacgt ccgcgggata acggttaagc
     9241 caaaccttct tcaattcttc acctctaaaa tgcgtgttcg tcgtcatcgc aaccccaaat
     9301 gatatacatg ccgttaacat aatattaact catcatacca gcttgataat tacccaacga
     9361 aaaggttgcg aagcgcgtca ctatttattt ttatctttac cgtaagaatg cagaaacagc
     9421 ggaccagccg ctgtttcttt ttctttaaaa acaagcaatt attcagttac aactgtttgt
     9481 actctcgcgg gaccgggatt ataccagccc catccgccgt agccataggg ccagccacga
     9541 ccgccataaa accatggatc aatcggctga ggcggcataa tcacctgctg ggttaaatgc
     9601 caacgtttgt aacccgttac ttgcatcacc ataaatttat agggcgtatt gccgattttg
     9661 ccgtcaaccg caccagtgat tggcccgact accgtaacca gttgtccacg gaaatccacc
     9721 gggtccagaa aaccgttcac atcggcataa atgcgaccgc gagaaggttc tcccagcgtc
     9781 ggtctggctc cgctgtccag cggtacggta gcaatttcca ggcgggtttt cccttgctgg
     9841 ttttgtaccg caaccacttt gccaccaaag cgtgcctcct gaccaacgta cagctgcggc
     9901 gcactcatca cccgaactaa atcttgttgc ggcgtgggac tgcggccttt aatggcgtcc
     9961 ggcacagtga cacaaccgct cagcattagc gcaaacgtac ctgccagtat gcctttgata
    10021 acattctttt gaaccgccat gatgcgactc ctttttttct cagagcatac tcttaagatt
    10081 cattctttgc ccggaagttt cttccatgcg acgttgttac gtaaataaac cggttcggca
    10141 tgttccaccg ccaccgtttt accctcggca aatatctgac acgcaatcgg cagcatatct
    10201 tccgtcgctg gcagtaaaac ttctccgtcg cgcaaaacca gcccgctctc tttaccgaga
    10261 tccggccagg cttgccagcc cgtccctacc gttacccatt cgccggaaag ctgttgcatt
    10321 cgttcatgaa cgagttcggg tttgagtacg gcttcggttt cttcaccgcg ccagataccg
    10381 ttttcatcac gctgatattc ggcccagtaa acttcgccca tccgcgcatc aatggcagcc
    10441 agcacgcggg ttgcgccgtt tttgcgccac gccccttgcg ccattgtcat tagcgtggag
    10501 acgccaatca tcggcagctc tgcgccaagt gccagccctt gcgcaatgcc aataccaatg
    10561 cgcacgccgg taaagctacc ggggccgcgc ccgtaagcca gagcgttaat atcagtcagg
    10621 gaagttccgc tggtggtcag gatatcctgc accatcggta agattcgttg agtatgttca
    10681 cgagggcaaa gctcaaaatg agcgttgaca gtaccgtcgt tccacagggc gacagagcag
    10741 gcctctgtcg cggtatcgat agccagaatt cgcatgggtc ttcgtgctta gatcaataaa
    10801 aaggcgcgca tcataccata ctccgtaaca aattacctgg aggatggtat cgcaaggaaa
    10861 cgaaccgcac gggcaatgtc acgggtgcgc ggcgcgggcg gcagactggc gagaaacgtc
    10921 gcgccgtaag ggcgcatcac cagccgattg tcacaaatca ccaaaacccc gcgatcgtcg
    10981 gcgtcgcgaa tcagtcgccc taccccctgc ttgagagtaa tcaccgcatc cggcagttgt
    11041 acttcatcga acgggtcgcc accgcgcaaa cggcaatctt ccatgcgcgc ttttaacagc
    11101 gggtcatccg gtgaggtaaa cggcaacttg tcgataatca ccaatgacaa tgtatcgcca
    11161 cgcacgtcca ccccttccca gaaactactg gttgccacaa gaagcgcgtt accggcgctg
    11221 acaaattgct gcaacagttg ccctttgctg gtttccccct gcaacaaaac gggaagcgtc
    11281 atggtagcgc ggaactgctc ggccagatca cgcatcatgg cgtgcgaggt acaaagcata
    11341 aaacaacgac cgttgttagc ttcgatgatc ggtcgcagca ttgccgctaa ctggcgagca
    11401 gaacctggct ggttggtttg cggcagattg cgcggcacac agagtaacgc ctggcggctg
    11461 taatcaaacg ggcttggcaa tagcaacgac tccgcctgtt ctatcccaag ccgcgaggtg
    11521 aaatgatgca gatcgtcgtt caccgacagc gttgctgagg tgaagatcca gctaccaggc
    11581 ttttgcgcca ttaactcttt gaatttatcc gccacgctga gcggcgtgag agccagagta
    11641 aaatggcgcg aagtgcattc gtaccagtag ctgtagcccg gctgattgat ctcttttagc
    11701 cgcttcagcc gtgtgcgata caacgtagcg cgctcaaatg ccgcatccag caaggcggaa
    11761 cgccccagtg acagtttcgc cacgtcataa caaagttcca gggtgtcatc gagcagtaaa
    11821 aatgcccgct gaatttgcgg attagctaac agctcacgca ggttaccgcg ataacctggc
    11881 tcaccgagtt gcagacgaaa atcctgcgca ctctgggcaa gacgatcagc gcacttttgt
    11941 aactgctggg tgtcttttaa ttcggtgcgg taggcgatgg tgatgtcttt tgccaggtcg
    12001 agcagttgtc gactggagag tgactgacca aaatactggc tggcaatgtc cggtagctgg
    12061 tgggcttcgt cgaagatcat gacgtccgct tccgggatca gttcgccaaa tccactctct
    12121 ttaaccacca tatccgccag aaagagatga tggtttacca ccaccacatc ggcgtccatc
    12181 gcttttttac gtgctttgac cacaaagcaa tctttataca tcgggcagtc gctgccaaga
    12241 cagttgtcgt tggtgctggt aaccagcggc cacgcctgtg aatcttccgc cacgctgacg
    12301 caggtgctga tatcaccatc gactgtttga ttagaccagg agcgcagcag gatcacatcg
    12361 cttaagattt gtaccggcag atcgcccccc gccagcgcct gctgttcgag acgttcgagg
    12421 cagaggtagt ttgagcgccc tttcagcagc gccacgttgc ccgtatattt caatgccttt
    12481 gagactgttg gcaaatcgcg gctgtagagc tgatcctgca acgcttttga gccggtcgag
    12541 ataatgactt tctttttcgc ccgcagcgca ggagccaggt aagcgtaggt tttgcccgta
    12601 ccggttcctg cttccaccac cagcggctgg cctttttcta tcgcctgggt gacggctacc
    12661 gccatctgtc gctgtggttc tcgcggctta aagcctggta tcgctttcgc cagctgaccg
    12721 tctggtgcaa aatcgtccgt cacactaccc cctgttgatt tgaacgggga ttatgtcagg
    12781 atgagggcgc tttcgccagt tgaagtggtg acggcaacct cacattgtgg cagtctttgc
    12841 agcacgaaaa tggaagtata atgaggacaa aatgatgact atcgttcgta tcgatgctga
    12901 agcccgctgg tctgatgtag taatccacaa caacacgctc tactacactg gtgtaccgga
    12961 aaacctcgac gccgatgctt ttgagcaaac cgccaacacg ctggcgcaga ttgacgccgt
    13021 gctggaaaaa cagggcagca ataaatcgag cattctggat gccaccattt tcctggctga
    13081 taaaaacgac ttcgcggcga tgaataaagc gtgggatgcc tgggttgtgg cgggtcatgc
    13141 gccggtgcgc tgcacggtgc aagcggggct gatgaacccg aagtataaag ttgaaattaa
    13201 gattgtggct gcggtgtaag ctttatcgaa gcaaaataag tcagacgatc atttatcgat
    13261 aatactggtc ggttttacat aaatcgacca gagattaaga tattactgtt gatgctcctg
    13321 ctaattcatt atttattttt ataatttcaa ttttagctat aaagcta
//
LOCUS       DADMJB010000116        13097 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.116, whole genome shotgun sequence.
ACCESSION   DADMJB010000116 DADMJB010000000
VERSION     DADMJB010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13097
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.116"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            176..1150
                     /gene="cysB"
                     /locus_tag="JN078_002917"
     CDS             176..1150
                     /gene="cysB"
                     /locus_tag="JN078_002917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012017585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator CysB"
                     /protein_id="HAY9042052.1"
                     /translation="MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDEL
                     GIQIFSRSGKHLTQVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHT
                     QARYALPNVIKGFIERYPRVSLHMHQGSPTQIADAVSKGNADFAIATEALHLYEDLVM
                     LPCYHWNRAIVVTPDHPLAGKKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTP
                     RIVFTATDADVIKTYVRLGLGVGVIASMAVDPVADPDLVRVDAHDIFSHSTTKIGFRR
                     STFLRSYMYDFIQRFAPHLTRDVVDAAVALRSNEEIEVMFKDIKLPEK"
     gene            1445..1609
                     /locus_tag="JN078_002918"
     CDS             1445..1609
                     /locus_tag="JN078_002918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmiA family putative membrane protein"
                     /protein_id="HAY9042053.1"
                     /translation="MLISDGDYMRLAMPSGNQEPRRDPELKRKAWLAVFLGSALFWVV
                     VALLIWKVWG"
     gene            1612..1779
                     /locus_tag="JN078_002919"
     CDS             1612..1779
                     /locus_tag="JN078_002919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588450.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042054.1"
                     /translation="MVGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFI
                     ELFAEDDQPKQ"
     gene            1893..1988
                     /locus_tag="JN078_002920"
     CDS             1893..1988
                     /locus_tag="JN078_002920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042055.1"
                     /translation="MINTNMKYWSWMGAFSLSMLFWAELLWIITH"
     gene            2152..4827
                     /gene="acnA"
                     /locus_tag="JN078_002921"
                     /pseudo
     CDS             2152..4827
                     /gene="acnA"
                     /locus_tag="JN078_002921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415792.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
     gene            complement(4891..5481)
                     /gene="ribA"
                     /locus_tag="JN078_002922"
     CDS             complement(4891..5481)
                     /gene="ribA"
                     /locus_tag="JN078_002922"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HAY9042056.1"
                     /translation="MQLKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHT
                     PVLARVHSECLTGDALFSLRCDCGFQLEAALTQIAEEGRGILLYHRQEGRNIGLLNKI
                     RAYALQDQGYDTVEANHQLGFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTE
                     AGINIVERVPLIVGRNPNNEHYLDTKAEKMGHLLNK"
     gene            5651..6415
                     /gene="pgpB"
                     /locus_tag="JN078_002923"
     CDS             5651..6415
                     /gene="pgpB"
                     /locus_tag="JN078_002923"
                     /EC_number="3.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase B"
                     /protein_id="HAY9042057.1"
                     /translation="MRSIARRTAVGAALLLVMPVAVWISGWRWQPGEQSWLLKAAFWV
                     TETVTQPWGVITHLILFGWFLWCLRFRIKAAFVLFAILAAAILVGQGVKSWIKDKVQE
                     PRPFVIWLEKTHHIPVDEFYTLKRAERGNLVKEQLAEEKNIPQYLRSHWQKETGFAFP
                     SGHTMFAASWALLAVGLLWPRRRTLTIAILLLWATGVMGSRLLLGMHWPRDLVVATLI
                     SWALVAVATWLAQRICGPLTPPAEENREIAQREQES"
     gene            6564..6872
                     /gene="lapA"
                     /locus_tag="JN078_002924"
     CDS             6564..6872
                     /gene="lapA"
                     /locus_tag="JN078_002924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapA"
                     /protein_id="HAY9042058.1"
                     /translation="MKYLLIFLLVLAIFVISVTLGAQNDQQVTFNYLLAQGEYRISTL
                     LAVLFAAGFAIGWLICGLFWLRVRVSLARAERKIKRLENQLSPATDVAVVPHSSAAKE
                     "
     gene            6879..8048
                     /gene="lapB"
                     /locus_tag="JN078_002925"
     CDS             6879..8048
                     /gene="lapB"
                     /locus_tag="JN078_002925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HAY9042059.1"
                     /translation="MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVN
                     FLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLT
                     YEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKA
                     IDVAERLVKLGKDKQRVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNRARVSI
                     MMGRVFMAKGEYAKAVESLQRVISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAV
                     EENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRA
                     KESLMVLRDMVGEKVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL"
     gene            8241..8978
                     /gene="pyrF"
                     /locus_tag="JN078_002926"
     CDS             8241..8978
                     /gene="pyrF"
                     /locus_tag="JN078_002926"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HAY9042060.1"
                     /translation="MTLTASSSSRAVTNSPVVVALDYHNRDDALSFVDKIDPRDCRLK
                     VGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASG
                     GARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLADLGVTLSPADYAERLAALTQK
                     CGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSDAGDQRRIMTPEQALAAGVDYM
                     VIGRPVTQSVDPAQTLKAINASLQRSA"
     gene            8978..9304
                     /gene="yciH"
                     /locus_tag="JN078_002927"
     CDS             8978..9304
                     /gene="yciH"
                     /locus_tag="JN078_002927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415798.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HAY9042061.1"
                     /translation="MSDSNSRLVYSTETGRIDEPKAAPVRPKGDGVVRIQRQTSGRKG
                     KGVCLITGIDLDDAELTKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKGMK
                     VKLAGG"
     gene            complement(9430..9648)
                     /gene="osmB"
                     /locus_tag="JN078_002928"
     CDS             complement(9430..9648)
                     /gene="osmB"
                     /locus_tag="JN078_002928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotically-inducible lipoprotein OsmB"
                     /protein_id="HAY9042062.1"
                     /translation="MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALG
                     GAVLTDGSTLGTLGGAAVGGVIGHQVGK"
     gene            complement(9917..10666)
                     /locus_tag="JN078_002929"
     CDS             complement(9917..10666)
                     /locus_tag="JN078_002929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HAY9042063.1"
                     /translation="MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKL
                     SYLRRAHGFAVSLDSDDVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLA
                     RTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHF
                     SKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKECEVIVLTDSSKFGAVHSYSIGPVE
                     RFNRVITDSKIRASDLMHLEHSKLTVHVVDI"
     gene            complement(10756..10929)
                     /locus_tag="JN078_002930"
     CDS             complement(10756..10929)
                     /locus_tag="JN078_002930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042064.1"
                     /translation="MSEFDAQRVAERIDIVLDILVAGDYHSAIHNLEILKAELLRQVA
                     ESTPDIPKAPWEI"
     gene            complement(11076..13061)
                     /gene="pdeR"
                     /locus_tag="JN078_002931"
     CDS             complement(11076..13061)
                     /gene="pdeR"
                     /locus_tag="JN078_002931"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic di-GMP phosphodiesterase"
                     /protein_id="HAY9042065.1"
                     /translation="MKTVRESTTLYNFLGSHNPYWRLTESSDVLRFSTTETTEPDRTL
                     QLSAEQAARIREMTVITSSLMMSLTVDESDLSVHLVGRKINKREWAGNASAWHDTPAV
                     ARDLSHGLSFAEQVVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLF
                     MSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKSEIFLIC
                     SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDN
                     FKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMA
                     SRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF
                     CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWRGEVRSLEALVRWQSPER
                     GLIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGINLRVAVNISARQLADQT
                     IFTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGY
                     SSLSQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKE
                     DAFLTKNGINERQGFLFAKPMPAVAFERWYKRYLKRA"
BASE COUNT         3333 a         3084 c         3294 g         3386 t
ORIGIN      
        1 tcgcgaaagc ggcccttttt tattgcatat tattttttct tcacacctat acactaaggc
       61 tataaatgat atagtggtta tagttagcac cttttttatt attaaatcgt attagtcacc
      121 cgccaggtgt gacgaaaaaa cgatgttctg atggcgtcta agtggatggt ttaacatgaa
      181 attacaacaa cttcgctata ttgttgaggt ggtcaatcat aacctgaatg tctcatcaac
      241 agcggaagga ctttacacat cacaacccgg gatcagtaaa caagtcagaa tgctggaaga
      301 cgagctaggc attcaaattt tttcccgaag cggcaagcac ctgacgcagg taacgccagc
      361 agggcaagaa ataattcgta tcgctcgcga agtcctgtcg aaagtcgatg ccataaaatc
      421 ggttgccgga gagcacacct ggccggataa aggctcactg tatatcgcca ccacgcatac
      481 ccaggcacgc tacgcattac caaacgtcat caaaggcttt attgagcgtt atcctcgcgt
      541 ttctttgcat atgcaccagg gctcgccgac acaaattgct gatgccgtct ctaaaggcaa
      601 tgccgatttc gctatcgcca cagaagcgct gcatctgtat gaagatttag tgatgttacc
      661 gtgctaccac tggaatcggg ctattgtagt cactccggat cacccgctgg caggcaaaaa
      721 agccattacc attgaagaac tggcgcaata tccgttggtg acatatacct tcggctttac
      781 cggacgttca gaactggata ctgcctttaa ccgcgcaggg ttaacgccgc gtatcgtttt
      841 cacggcaacg gatgctgacg tcattaaaac ttacgtccgg ttagggctgg gggtaggggt
      901 cattgccagc atggcggtgg atccggtcgc cgatccggac cttgtgcgcg ttgatgctca
      961 cgatatcttc agccacagta caaccaaaat tggttttcgc cgtagtactt ttttgcgcag
     1021 ttatatgtat gatttcattc agcgttttgc accgcattta acgcgtgatg tcgttgatgc
     1081 ggctgtcgca ttgcgctcta atgaagaaat tgaggtcatg tttaaagata taaaactgcc
     1141 ggaaaaataa tttcttgcgt tattttcggc accttttatg tagcgaaggt gccggaatat
     1201 attctctttt gttacttatt tttataccgt gcacaatatt tttatccctc atatttatag
     1261 ggtaaattac ctgtaaagta gtgtctaatt acccgcctcg caaattccag ttttcaaata
     1321 tctatttcag gtcaaaagat tgaattattc actggagacg attcgtaaat tcgctggatt
     1381 tttgactaaa gtttctttag gatttgtctc atcgtatgat taattacacc aatcgttcaa
     1441 cgtcttgctg ataagtgatg gcgattatat gaggttagca atgccttctg gaaatcagga
     1501 accccgccgc gatcctgaat taaaacgtaa agcctggctg gcggtttttc ttggttctgc
     1561 acttttctgg gtggttgtcg cactgctgat ttggaaagtg tggggataac tatggtcggt
     1621 caggagcaac tggagtcgtc accattatgc cagcatagtg acaatgaaac agaaacgaaa
     1681 cgggaatgtt ccgtcgttat tccagacgac tggcaactaa catcgcagca gcaagccttt
     1741 atagaactgt ttgctgaaga tgatcagccg aaacaataat tatcatcatt cttattaccc
     1801 atttttaatg aattaaaggg cttttaatac accgcagcaa taacagcttg agttatctca
     1861 acacaaaata ataaccgtta agggtgtagc ctatgatcaa cacaaatatg aaatattggt
     1921 cctggatggg cgcgttttct ctgtcgatgc tcttctgggc cgaactcctc tggatcatta
     1981 ctcactgatc cttgaccccg ctgcggcggg gttgtcattt gctttgccac aaggtttctc
     2041 ctcttttatc aatttgggtt gttatcaaat cgttacgcga tgtttgtgtt atctttaata
     2101 ttcaccctga agagaatcag ggcttcgcaa ccctgtcatt aaggaggagc tatgtcgtca
     2161 accctacgag aagccagtaa ggacacgttg caggccaaag ataaaactta ccactactac
     2221 agcctgccgc ttgctgctaa atcactgggc gatatcaccc gtctacccaa gtcactcaaa
     2281 gttttgctcg aaaacctgct gcgctggcag gatggtaact cggttaccga agaggatatc
     2341 cacgcgctgg caggatggct gaaaaatgcc catgctgacc gtgaaattgc ctaccgcccg
     2401 gcaagggtgc tgatgtagga ctttaccggc gtacctgccg ttgttgatct ggcggcaatg
     2461 cgcgaagcgg ttaaacgcct cggcggcgat actgcaaagg ttaacccgct ctcaccggtc
     2521 gacctggtca ttgaccactc ggtgaccgtc gatcgttttg gtgatgatga ggcatttgaa
     2581 gaaaacgtac gcctggaaat ggagcgcaac cacgaacgtt atgtgttcct gaaatgggga
     2641 aagcaagcgt tcagtcggtt tagcgtcgtg ccgccaggca caggcatttg ccatcaggtt
     2701 aacctcgaat atctcggcaa agcagtgtgg agtgaattgc aggacggtga atggattgct
     2761 tatccggata cactcgttgg tactgactcg cacaccacta tgatcaacgg ccttggcgtg
     2821 ctggggtggg gcgtgggtgg gatcgaagca gaagccgcaa tgttaggcca gccggtttcc
     2881 atgcttatcc cggacgtagt gggctttaaa cttaccggta aattacgtga aggtattacc
     2941 gccacagacc tggttctcac tgttacccaa atgctgcgca aacatggcgt ggtggggaaa
     3001 ttcgtcgaat tttatggtga tggtctggat tcactaccgc tggcggatcg cgccaccatt
     3061 gccaatatgt cgccagaata tggtgccacc tgtggcttct tcccaatcga tgctgtaacc
     3121 ctcgattaca tgcgtttaag cgggcgcagc gaagatcagg ttgagttggt cgaaaaatat
     3181 gccaaagcgc agggcatgtg gcgtaacccg ggcgatgaac cgatttttac cagtacgtta
     3241 gaactggata tgaatgacgt tgaagcgagc ctggcagggc caaaacgccc acaggatcgc
     3301 gttgcactgc ccgatgtacc aaaagcattt gccgccagta acgaactgga agtgaatgcc
     3361 acgcataaag atcgccagcc ggtcgattat gttatgaacg gacatcagta tcagttacct
     3421 gatggcgctg tggtcattgc tgcgataacc tcgtgcacca acacctctaa cccaagtgtg
     3481 ctgatggccg caggcttgct ggcgaaaaaa gccgtaactc tgggcctcaa gcggcaaccg
     3541 tgggtcaaag cgtcgctggc accgggttcg aaagtcgttt ctgattatct ggcaaaagcg
     3601 aaactgacac cgtatctcga cgaactgggg tttaaccttg tgggatacgg ttgtaccacc
     3661 tgtattggta actctgggcc gctgcccgat cctatcgaaa cggcaatcaa aaaaggcgat
     3721 ttaaccgtcg gtgcggtgct gtccggcaac cgtaactttg aaggccgtat ccatccgctg
     3781 gttaaaacta actggctggc ctcgccgccg ctggtggttg cctatgcgct ggcgggaaat
     3841 atgaatatca acctggctgc tgagcctatt ggtcatgatc gtaaaggcga cccggtttat
     3901 ctgaaagata tctggccatc ggcacaggaa attgcccgtg cggtagaaca agtctccaca
     3961 gaaatgttcc gtaaagagta cgcagaagtt tttgaaggca cagcagagtg gaaggaaatt
     4021 aacgtcacac gatccgatac ctacggttgg caggaggatt caacctatat tcgcttatcg
     4081 cctttctttg atgaaatgca ggcaacacca gcacctgtgg aagatattca cggtgcgcgg
     4141 atcctcgcaa tgctggggga ttcagtcacc actgaccata tctctccggc gggcagtatt
     4201 aagcccgaca gcccggcggg tcgatatcta caaggtcggg gtgttgagcg aaaagacttt
     4261 aactcctacg gttcgcggcg tggtaaccat gaagtgatga tgcgcggcac cttcgccaat
     4321 attcgcatcc gtaatgaaat ggtgcctggc gttgaagggg ggatgacgcg gcatttacct
     4381 gacagcgatg ttgtctctat ctatgatgcc gcgatgcgct ataagcagga gcaaacgccg
     4441 ctggcggtga ttgccgggaa agagtatgga tcaggctcca gccgtgactg gacggcaaaa
     4501 ggtccgcgtc tgcttggtat tcgtgtggtg attgccgaat cgtttgaacg aattcaccgt
     4561 tcgaatttaa ttggcatggg catcttgccg ctggaatttc cgcaaggcgt gacgcgtaaa
     4621 acgttagggc taaccgggga agagaagatt gatattggcg acctgcaaaa tctacaaccc
     4681 ggcgcgacgg ttccggtgac gcttacgcgc gcggatggta gccaggaagt cgtaccctgc
     4741 cgttgtcgta tcgacaccgc gacggagttg acctactacc agaacgacgg cattttgcat
     4801 tatgtcattc gtaatatgct gaagtaacaa gtatttgctt gccggttatt ttgcttccgg
     4861 caagcaaatt aattccacaa tgcgagaggg ttatttgttc agcaaatgac ccattttctc
     4921 ggctttggta tcgagataat gttcgttatt ggggttacga cctacaatca atggtacgcg
     4981 ttcaacaata ttaatccctg cttcggtcag aatttcgact tttttcgggt tattggttaa
     5041 caagcggact tcattgacgc caaggagttt gaacatatca gcgcaaagag tgaagtcgcg
     5101 ctcatcagcg gcgaagccta actggtggtt agcctctacg gtatcgtaac cttgatcctg
     5161 cagtgcgtaa gcgcggattt tattcagcag accaatgtta cgaccttcct gacggtgata
     5221 cagcaaaata ccacggcctt cctcggcaat ttgcgtcaat gccgcttcga gctggaagcc
     5281 acaatcgcag cgcaagctga acagggcgtc accggtcaga cattcggaat ggacgcgcgc
     5341 aagtaccggg gtatgcccgg aaatatcgcc atagactagc gcgacatgat cgtgtccggt
     5401 tgccagttct tcaaatccca ccatcaggaa atcgccccat ggggttggca gtttggcttc
     5461 tgccacacgt ttaagctgca tgaaattctc cagataatgc tggttctgta ttggcttatt
     5521 ttgccataac gagaaggggt tcacctaatc acgacgcgtc gatcgttcac ggaatggcac
     5581 aaatctgtca atttttcctg gaactggcgt tttcagttat gattgtggga cttatcaaaa
     5641 aggagaggcc atgcgttcga ttgccagacg taccgcagtg ggagctgcac tattgcttgt
     5701 catgccagta gccgtatgga tttctggctg gcgttggcaa cctggagaac aaagttggct
     5761 actaaaagcg gctttttggg ttactgaaac tgtcacccag ccctggggcg tcattacaca
     5821 tttgatttta ttcggctggt ttctctggtg tctgcgtttt cgcattaagg ctgcctttgt
     5881 attatttgcc attctggcgg ccgcaatcct tgtgggacaa ggcgttaaat cctggatcaa
     5941 agacaaagtc caggaaccac gaccttttgt tatctggctg gaaaaaacac atcatattcc
     6001 ggttgatgag ttctacactt taaagcgagc agaacgcgga aatctagtga aagaacagtt
     6061 ggctgaagag aaaaatatcc cacaatattt gcgttcacac tggcagaaag agacggggtt
     6121 tgcctttcct tccggtcaca cgatgtttgc tgccagttgg gcactgctgg ccgttggttt
     6181 gctgtggccg cgtcggcgaa cgttaaccat tgctatcttg ctgctctggg caacgggagt
     6241 catgggaagc cgcctgctgc tcgggatgca ttggccacgc gatctggtag tagctacatt
     6301 gatttcgtgg gcgctggtgg cggtggcaac gtggcttgcg caacgaattt gtgggccatt
     6361 aacaccacct gcggaagaaa atcgcgaaat agcgcaacga gaacaagaaa gttaacgctg
     6421 gttgattttc cgaatttagc ccttaaatca tcaacaatgc gcgtggatgc catttcgcag
     6481 acggcgcgaa aatggtactt taaagggcta ttgcggtaag ttgaccataa tttattcgct
     6541 ctaaccacat aacgggaagt aatgtgaaat atttactcat tttcttactg gtgttagcga
     6601 tcttcgtgat ttcggtcacg ttgggtgcgc agaacgatca acaggtgacg tttaattatc
     6661 tgttagcgca aggggagtac cgtatttcca cattgctggc ggtattgttt gctgcggggt
     6721 ttgctatcgg ttggttgatt tgtggcctgt tctggctgcg agttcgtgtt tccctggcgc
     6781 gcgctgaacg taaaataaag cgactggaaa accagctttc acccgcgact gacgtggctg
     6841 tagtgccgca ctcgtcagcg gcgaaggaat aactttctat gctggagttg ttgtttctgc
     6901 ttttgcctgt agccgctgcc tatggctggt atatgggccg cagaagtgcg caacaaaaca
     6961 agcaagatga agccaaccgc ttgtcgcgtg attacgtagc gggggttaac ttcctgctta
     7021 gtaatcaaca ggataaagcg gtagacctgt ttctcgatat gcttaaagag gatacaggca
     7081 ccgttgaagc ccaccttacg ctcggaaacc tgttccgttc gcgtggcgaa gttgatcgcg
     7141 ctattcgcat ccatcagacc ctaatggaaa gcgcctcgct gacctatgaa cagcgtctgt
     7201 tggcgattca acaactaggg cgtgattaca tggccgccgg gttatacgac cgcgcggaag
     7261 acatgttcaa tcagctgacc gatgaaactg acttccgcat tggcgctctg caacagttgc
     7321 tacaaatcta ccaggctacc agtgagtggc agaaagcaat tgatgttgcc gaacgcctgg
     7381 tgaagctggg taaagataaa cagcgcgtcg aaattgccca tttctactgt gagttagccc
     7441 tgcagcatat ggccagcgac gatctcgatc gtgccatgac cttgctaaaa aaaggggcgg
     7501 cggcagataa aaacagagcc cgcgtatcca tcatgatggg acgcgtgttt atggcgaaag
     7561 gagaatacgc caaagccgtc gaaagtttgc aacgcgtgat atcccaggac agagaactgg
     7621 tcagcgaaac gctggaaatg ttgcaaacct gctatcagca gttgggtaaa actgccgaat
     7681 gggcagaatt cctgcaacgc gcggtggaag agaacaccgg tgccgatgct gaattgatgc
     7741 ttgctgatat catcgaagcg cgcgacggta gtgaggccgc acaggtctat attacgcgcc
     7801 agcttcagcg tcatccgacc atgcgtgtgt tccataagtt aatggattac cacttaaatg
     7861 aagcggaaga agggcgtgcc aaagagagcc tgatggtgct gcgtgacatg gttggcgaaa
     7921 aggtacgtag taagcctcgt tatcgctgcc agaaatgtgg ttttaccgca tacaccctct
     7981 actggcattg tccgtcttgt cgggcctggt caaccattaa accgattcgc ggtcttgatg
     8041 gcctgtaatt tttaaaaaaa tccgacttta gttacaacat gctagttatt gatgttccat
     8101 tgtgctccgg caacgacgga gcagaaaaag cctgccaggg gaaaaatcgc aactgttaat
     8161 tttttatttc cacgggtaga atgctcgccg tttacctgtt tcgcgccact tccggtgccc
     8221 atcatcaaga aggtctggtc atgacgttaa ctgcttcatc ttcttcccgc gctgttacga
     8281 attctcctgt ggttgttgcc cttgattatc ataatcgtga tgacgcgctg tcctttgtcg
     8341 acaagatcga cccacgcgat tgtcgtctga aggtcggcaa agagatgttt acattgtttg
     8401 ggccacagtt tgtgcgcgaa cttcaacagc gtggttttga tatctttctt gacctgaaat
     8461 tccacgatat tcctaacact gcagcgcacg ctgtcgctgc tgcagctgac ttaggcgtgt
     8521 ggatggtgaa tgttcatgcc tctggtgggg cgcgtatgat gaccgcagcg cgtgaggcac
     8581 tggttccgtt tggcaaagat gcaccgcttt tgattgctgt aacagtgttg accagcatgg
     8641 aagctagcga cctggccgat cttggcgtga cactgtcacc tgcagattat gcagaacgtc
     8701 tggcggcact gacgcaaaaa tgtggccttg atggtgtggt gtgttctgct caggaagctg
     8761 tgcgctttaa acaggtattc ggtcaggagt tcaaactggt tacaccgggc attcgtccgc
     8821 aggggagtga tgctggtgac cagcgccgca ttatgacgcc agaacaggcg ttggcggctg
     8881 gtgttgatta tatggtgatt ggtcgcccgg taacgcaatc ggtagatcca gcgcaaacac
     8941 tgaaagcgat caacgcctct ttacagcgga gtgcatgatg agtgattcca acagccgtct
     9001 ggtctactca acggaaaccg gacgtattga tgagccaaaa gcggccccag tacgccctaa
     9061 aggcgatggt gtggtgcgta ttcagcgtca gaccagtgga cgtaaaggta agggcgtttg
     9121 cctgattacc ggtatcgatc tcgatgatgc cgaactgaca aaacttgcag cggaactgaa
     9181 gaaaaaatgc ggctgcggcg gagcagttaa agatggagtt attgaaatcc agggcgataa
     9241 gcgtgattta ttaaaatcac tacttgaagc gaaagggatg aaggtaaaac tcgcaggcgg
     9301 ttaacataaa aagccacgga tatatccgtg gctttcgaat attttactgt gtgtattatt
     9361 cagttatttc gtactgaaca aaatcaagcg tattataatt gcgagtcgat aatcgacatt
     9421 tatttacgat tatttaccga cctggtgacc aataacacca ccgacagctg caccacctaa
     9481 tgtacccaac gtactgccat cggtcagtac tgcaccgcct aatgcccctg cacccgcgcc
     9541 gattgcggtg ttgcggtccc gtttagacca gttagaacag gcactcagag acattgccaa
     9601 agtaattgcc agaacagccg cggtcatttt tttgctcgtt acaaacataa tactctctcc
     9661 tgaatttatg attcacggaa gtaagctctc tataactata atagctaaga ataagcctgg
     9721 tgaaattatt ccgtgaaatc tgctcgcgcg cagggttata tcacgcaggt gataatgact
     9781 tcctgttata tcgctgataa taattttata tcttaagcgt gttaataaca ggtaaatagt
     9841 cttaattatc aaccaggaat catcttagag cggatgattt gccaaactgc aaatcatccg
     9901 tagagaaggg aaatggttaa atgtcaacga cgtgaacggt gagtttactg tgctcaagat
     9961 gcatcagatc gctggcgcgt attttcgaat cggtaatcac gcgattgaat cgctcaacgg
    10021 gaccgatgga gtatgaatgt acagcaccaa atttcgagct gtcagtcagg actatcactt
    10081 cgcactcttt ttccagcacg gcattgacca catcggtacg catcatatcg cgaccggtga
    10141 atccagtttc aggttgccag ccatcaatac caataaatgc tttgctgaaa tgcacctgct
    10201 ggatgcactg gcgtgtcaac gggccaacca tactttcgct ttttttctgg tacacgccac
    10261 cgagcaaaat gacttcacaa ggcgcgtctt tcagcaaatg cgcgatgtag ctgctgaccg
    10321 tgatgatagt gacatttttc ttctgctccc ccagagtccg ggcgagcagg gcattgctgc
    10381 tgccattttc gataaagatg gtttcgcccg gttgaaccag tgacgcggca aactcggcga
    10441 gttcacgctt cagcgtatag ttgctcatca tacgggtttc gacgtcatca ctatcaagcg
    10501 aaactgcaaa gccatgtgca cggcggaggt aactcagttt ttcgagggtg ttgagatcct
    10561 ggcgaatggt aacttcagaa actccagtgg cttttgccag atcggttacg ctaacctgac
    10621 cctggtcaat gaccatctgt agaatagttt gttgtcggga attcatcgct gtaattctta
    10681 taacgttata atactaaata aaaaaatact gacgcgccgg gcatcctcaa ataggaaaac
    10741 ctgaaggcac gattgttaaa tctcccacgg tgccttcggg atgtctggcg tagattcagc
    10801 aacctggcgc aagagttctg ctttaagtat ctcgagatta tggatcgcag agtggtaatc
    10861 gcctgccaca aggatatcta acacaatatc aatacgttcg gcaacgcgct gggcatcaaa
    10921 ttcagacatc aaggacatcc ttatagcaaa agtggaaaat gaataatgca aaaattgccg
    10981 ctaaaagaga agtgtttaac agcaacggct aattatcatc caggaatacg atatataatg
    11041 acgggatata gcgctaagta tatatattca tctacttatg cgcgcttcag atagcgttta
    11101 taccagcgtt cgaaggcgac ggcgggcatc ggtttggcaa acaaaaatcc ttgccgctca
    11161 ttgatcccgt tcttggttaa aaaagcatct tcctttgcac tctctacacc ttcggcgatc
    11221 acctgaagat tcaatgcctg ggccacagcg acgatcgccc ggaccagtga ctgcgagaca
    11281 ggttgtttgt gaatatctcg aacaaaaacc tggtcaagtt tgatggcatc gatcggaaag
    11341 cgcgccagtt gcgaaagtga agagtagccg gtaccaaaat catccagatg cacttgcgca
    11401 cctagttggc taaattgttg aataacagac agtgccagtt catcattctc aatcagacaa
    11461 ctctctgtca gttcaacatc tatagggcag tattcaaaat tgagttcctg gagaacctgt
    11521 ttcagggcgg tgaaaatggt ttgatcggcg agctgacgtg cagaaatatt taccgccact
    11581 cgcaggttta tgcctttatc ccgccacttt gccacctggc gtacgacatc gagaatcacc
    11641 caacggccta aaggcacaat tagccctgac tcttcggcgt aggaaatgaa gtccaacggt
    11701 ggaatcaacc cacgttcagg tgactgccaa cgtactagtg cttccagact gcgcacttcg
    11761 ccacgccagg tgattttcgg ttgatagtga ataaccaact gatcgttttc cagtgcttta
    11821 cgcaagttgg tatccagcca gagatattca aatacccgtt gattcatttc tggggtaaaa
    11881 acgcaaaatt gtcctcgtcc gccttccttc gctgtgtaca ttgctgtgtc ggcgtgacga
    11941 ataatagccg tgctgtctga accatgttcg ggagagagtg caatacctac tgaacagctg
    12001 gtataaactt caattaaacc aatgcgaaag gggagccgta agcgggtcaa aattcgtgat
    12061 gccattgctt ccagcgcgct ttgtgaggtg ttggatgcca gtaccagaaa ctcatcccca
    12121 cctggacgcg ccaacacctg gtcatgttcg agacagctta aaatagccaa tgacacgtcg
    12181 cgtaataact ggtcaccaaa caaatgccca taggcgtcgt tgaccttttt gaaattatcc
    12241 aaatcaagat acacaacccc aactttattg ttatctgcat gattaatagc gtgatcgatt
    12301 aaatcctgca ttgcgttacg attcggcagt ccggtgatac tgtcggtatt tgccagaata
    12361 cgcagtcgct cctgagcgcg gcgctcttcg gtaatgtcgg tgccggaaca gattaaaaaa
    12421 atctcgcttt tgccactgcc gctgtggaca aatttattgc gaaacagaaa cagccgctgg
    12481 cctttacatg ttggtatcca cagttcgact tcatatgcat tgccgcttcg aaaaaataca
    12541 cggttattgc gcctggatgc cgcagcttca cgacggctca taaacagttt aaacacgctt
    12601 tggccaatga cgtcgtgttc tttcaaccca gtgtaatctt cacataaccg attgaagcgt
    12661 tggatattcc cccggctgtc gagaatcact attgcggaat gtgcttcaga aactacctgc
    12721 tcagcaaagg aaagcccgtg tgataaatca cgagcaactg ccggtgtgtc atgccatgca
    12781 gacgcgttgc cagcccattc ccgtttattg atttttcgtc ctaccagatg cacagaaaga
    12841 tcgctctcat cgacggtcag actcatcatc aggctggagg tgatgaccgt catttccctg
    12901 atgcgagcag cctgttcggc agataactgc aaagtacgat caggttctgt ggtttcggtg
    12961 gtagaaaagc gcaaaacatc gctgctttcc gtcaaccgcc agtatggatt gtgcgatccg
    13021 agaaagttgt acaacgttgt ggactcccta acggttttca tgatgcatat cctccggtta
    13081 aataaaagga acaacat
//
LOCUS       DADMJB010000117        13094 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.117, whole genome shotgun sequence.
ACCESSION   DADMJB010000117 DADMJB010000000
VERSION     DADMJB010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13094)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13094)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13094
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.117"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            4..1632
                     /locus_tag="JN078_002932"
     CDS             4..1632
                     /locus_tag="JN078_002932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001381416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flotillin family protein"
                     /protein_id="HAY9042066.1"
                     /translation="MFTAIIAVCILFIIGIIFARLYRRASAEQAFVRTGLGGQKVVMS
                     GGAIVMPIFHEIIPINMNTLKLEVSRSTIDSLITKDRMRVDVVVAFFVRVKPSVEGIA
                     TAAQTLGQRTLSPEDLRMLVEDKFVDALRATAAQMTMHELQDTRENFVQGVQNTVAED
                     LSKNGLELESVSLTNFNQTSKEHFNPNNAFDAEGLTKLIQETERRRRERNEVEQDVEV
                     AVREKNRDALSRKLEIEQQEAFMTLEQEQQVKTRTAEQNARIAAFEAERRREAEQTRI
                     LAERQIQETEIEREQAVRSRKVEAEREVRIKEIEQQQVTEIANQTKSIAIAAKSEQQS
                     QAEARANLALAEAVSAQQNVETTRQTAEADRAKQVALIAAAQDAETKAVELTVRAKAE
                     KEAAEMQAAAIVKLAEATRKKGLAEAEAQRALNDAINVLSDEQTSLKFKLALLQALPA
                     VIEKSVEPMKSIDGIKIIQVDGLNRGSAAGDANTGNVGGGNLAEQALSAALSYRTQAP
                     LIDSLLNEIGVSGGSLAALTSPLTSTTPVAENVE"
     gene            1871..1930
                     /locus_tag="JN078_002933"
     CDS             1871..1930
                     /locus_tag="JN078_002933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HAY9042067.1"
                     /translation="MMKLVIILIVLLLVSFAAY"
     gene            2247..2306
                     /gene="ibsE"
                     /locus_tag="JN078_002934"
     CDS             2247..2306
                     /gene="ibsE"
                     /locus_tag="JN078_002934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin IbsE"
                     /protein_id="HAY9042068.1"
                     /translation="MMKFVIILVVLLLLSFPTY"
     gene            complement(2426..3859)
                     /gene="hldE"
                     /locus_tag="JN078_002935"
     CDS             complement(2426..3859)
                     /gene="hldE"
                     /locus_tag="JN078_002935"
                     /EC_number="2.7.1.167"
                     /EC_number="2.7.7.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase/D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase HldE"
                     /protein_id="HAY9042069.1"
                     /translation="MKVTLSEFERAGVMVVGDVMLDRYWYGPTSRISPEAPVPVVKVN
                     TIEERPGGAANVAMNIASLGANARLVGLTGIDDAARALSKSLADVNVKCDFVSVPTHP
                     TITKLRVLSRNQQLIRLDFEEGFEGVDPQPLHERINQALSSIGALVLSDYAKGALASV
                     QQMIQLARKAGVPVLIDPKGTDFERYRGATLLTPNLSEFEAVVGKCKTEEEIVERGMK
                     LIADYELSALLVTRSEQGMSLLQPGKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAA
                     GNSLEEACFFANAAAGVVVGKLGTSTVSPIELENAVRGRADTGFGVMTEEELKLAVAA
                     ARKRGEKVVMTNGVFDILHAGHVSYLANARKLGDRLIVAVNSDASTKRLKGDSRPVNP
                     LEQRMIVLGALEAVDWVVSFEEDTPQRLIAGILPDLLVKGGDYKPEEIAGSKEVWANG
                     GEVLVLNFEDGCSTTNIIKKIQQDKKG"
     gene            complement(3907..6747)
                     /gene="glnE"
                     /locus_tag="JN078_002936"
     CDS             complement(3907..6747)
                     /gene="glnE"
                     /locus_tag="JN078_002936"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HAY9042070.1"
                     /translation="MKPLSSPLQQYWQTVVERLPEPLAEKSLSAQAKSVLTFSDFVQD
                     SVIAHPEWLTELESQSPQADEWQHYAAWLQEALSNVSDEAGLMRELRLFRRRIMVRIA
                     WAQTLALVTEESILQQLSHLAETLIVAARDWLYDACCREWGTPCNAQGEAQPLLILGM
                     GKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIKVLDQPTQDGF
                     VYRVDMRLRPFGESGPLVLSFAALEDYYQEQGRDWERYAMVKARIMGDSEGVYANELR
                     AMLRPFVFRRYIDFSVIQSLRNMKGMIAREVRRRGLTDNIKLGAGGIREIEFIVQVFQ
                     LIRGGREPSLQSRSLLPTLSVIAALHLLSENDAEQLRVAYLFLRRLENLLQSINDEQT
                     QTLPSDELNRARLAWAMDFADWPQLTGALTAHMTNVRRVFNELIGDDESETQEESLSE
                     QWRELWQDALQEDDTTPVLAHLSEDDRKQVLTLIADFRKELDKRTIGPRGRQVLDHLM
                     PHLLSDVCAREDAAVTLSRITALLVGIVTRTTYLELLSEFPAALKHLISLCAASPMIA
                     SQLARYPLLLDELLDPNTLYQPTATDAYRDELRQYLLRVPEDDEEQQLEALRQFKQAQ
                     LLRIAAADIAGTLPVMKVSDHLTWLAEAMIDAVVQQAWVQMVARYGKPNHLNDREGRG
                     FAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMHLFN
                     TRTSSGILYEVDARLRPSGAAGMLVTSAEAFADYQKNEAWTWEHQALVRARVVYGDPQ
                     LTAHFDAVRREIMMLPREGKTLQTEVREMREKMRAHLGNKHRNRFDIKADEGGITDIE
                     FITQYLVLRYAHEKPKLTRWSDNVRILELLAQNDIMEEQEAMALTRAYTTLRDELHHL
                     ALQELPGHVSEDCFTAERDLVRASWQKWLVEE"
     gene            complement(6770..8071)
                     /locus_tag="JN078_002937"
     CDS             complement(6770..8071)
                     /locus_tag="JN078_002937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic triphosphatase"
                     /protein_id="HAY9042071.1"
                     /translation="MAQEIELKFIVNHSAVEALRDHLNTLGGEHHDPVQLLNIYYETP
                     DNWLRGHDMGLRIRGENGRYEMTMKVAGRVTGGLHQRPEYNVALSEPTLDLAQLPTEV
                     WPNGELPADLASRVQPLFSTDFYREKWLVAVDDSRIEIALDQGEVKAGEFAEPICELE
                     LELLSGDTRAVLKLANQLVSQTGLRQGSLSKAARGYHLAQGNPAREIKPTTILHVAAK
                     ADVEQGLEAALELALAQWQYHEELWVRGNDAAKEQVLAAIGLVRHTLMLFGGIVPRKA
                     STHLRDLLTQCEATIASAVSAVTAVYSTKTAMAKLALTEWLVSKAWQPFLDAKAQSKM
                     SDSFKRFADIHLSRHAAELKSVFCQPLGDRYRDQLPRLTRDIDSILLLAGYYDPVVAQ
                     AWLENWQGLRHAIATGQRIEIEHFRNEANNQEPFWLHSGKR"
     gene            8313..8933
                     /locus_tag="JN078_002938"
     CDS             8313..8933
                     /locus_tag="JN078_002938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HAY9042072.1"
                     /translation="MPKLRLIGLTLLALSATAVSHAEETRYVSDELNTWVRSGPGDHY
                     RLVGTVNAGEEVTLLQTDANTNYAQVKDSSGRTAWIPLKQLSTEPSLRSRVPDLENQV
                     KTLTDKLTNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNELIVAQKKVDAASV
                     QLDDKQRTIIMQWFMYGGGVLGLGLLLGLVLPHLIPTRKRKERWMN"
     gene            8997..10235
                     /gene="cca"
                     /locus_tag="JN078_002939"
     CDS             8997..10235
                     /gene="cca"
                     /locus_tag="JN078_002939"
                     /EC_number="2.7.7.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused tRNA nucleotidyltransferase/2',3'-cyclic
                     phosphodiesterase/2' nucleotidase/phosphatase Cca"
                     /protein_id="HAY9042073.1"
                     /translation="MKIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGR
                     DFPVFLHPQTHEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDD
                     NGEIIDPYNGLGDLQNRLLRHVSPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLM
                     REMTHAGELEHLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPA
                     PARWHPEIDTGIHTLMTLSMAAMLSPQVDVRFATLCHDLGKGLTPPELWPRHHGHGPA
                     GVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQR
                     VEQLALTSEADVRGRTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFKGVEIREEL
                     TRRRIAAVASWKEQRCPKPD"
     gene            complement(10392..11213)
                     /gene="bacA"
                     /locus_tag="JN078_002940"
     CDS             complement(10392..11213)
                     /gene="bacA"
                     /locus_tag="JN078_002940"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708867.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HAY9042074.1"
                     /translation="MSDMHSLLIAAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGDT
                     AKTFEVVIQLGSILAVVVMFWRRLFGLIGIHFGRPLQHEGESKGRLTLIHILLGMIPA
                     VVLGLLFHDTIKSLFNPINVMYALVVGGLLLIAAECLKPKEPRAPGLDDMTYRQAFMI
                     GCFQCLALWPGFSRSGATISGGMLMGVSRYAASEFSFLLAVPMMMGATALDLYKSWGF
                     LTTGDIPMFAVGFITAFVVALIAIKTFLQLIKRISFIPFAIYRFIVAAAVYVVFF"
     gene            complement(11304..11672)
                     /gene="folB"
                     /locus_tag="JN078_002941"
     CDS             complement(11304..11672)
                     /gene="folB"
                     /locus_tag="JN078_002941"
                     /EC_number="4.1.2.25"
                     /EC_number="5.1.99.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708868.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional dihydroneopterin
                     aldolase/7,8-dihydroneopterin epimerase"
                     /protein_id="HAY9042075.1"
                     /translation="MDIVFIEQLSVITTIGVYDWEQTIEQKLVFDIEMAWDNRKAAKS
                     DDVADCLSYADIAETVVSHVEGARFALVERVAEEVAELLLARFNSPWVRIKLSKPGAV
                     ARAANVGVIIERGNNLKENN"
     gene            11777..12394
                     /gene="plsY"
                     /locus_tag="JN078_002942"
     CDS             11777..12394
                     /gene="plsY"
                     /locus_tag="JN078_002942"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HAY9042076.1"
                     /translation="MSAIAPGMILIAYLCGSISSAILVCRLCGLPDPRTSGSGNPGAT
                     NVLRIGGKGAAVAVLIFDVLKGMLPVWGAYELGVSPFWLGLIAIAACLGHIWPVFFGF
                     KGGKGVATAFGAIAPIGWDLTGVMAGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKP
                     QFTFPVSMLSCLILLRHHDNIQRLWRRQETKIWTKFKRKREKDPE"
     gene            complement(12407..>13094)
                     /gene="ttdR"
                     /locus_tag="JN078_002943"
                     /gene_synonym="dan"
     CDS             complement(12407..>13094)
                     /gene="ttdR"
                     /locus_tag="JN078_002943"
                     /gene_synonym="dan"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-binding transcriptional activator TtdR"
                     /protein_id="HAY9042077.1"
                     /translation="LVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQ
                     VHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQS
                     LQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIM
                     LRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL
                     GKPDEGYQVM"
BASE COUNT         3163 a         3682 c         3283 g         2966 t
ORIGIN      
        1 tggatgttta ccgcgattat tgccgtatgc attctgttta ttattggaat tattttcgcc
       61 aggctctatc gtcgcgcttc ggcagagcaa gcttttgttc gtactggttt aggtgggcaa
      121 aaagtggtga tgagcggtgg cgcaatcgtg atgccgatct ttcatgaaat aatccccatc
      181 aatatgaata ctctgaagct ggaagtcagc cgctcaacca ttgatagcct gattacgaaa
      241 gatcgtatgc gtgtcgatgt agtagtcgct ttctttgtac gggtaaaacc gtctgtagaa
      301 ggcatcgcca ctgcggcgca gacgttgggg caacgcacgc tatcaccaga agacttacgt
      361 atgttggttg aagataaatt tgtcgatgcc ctccgtgcaa cagctgcaca aatgaccatg
      421 catgagttac aggatacccg cgagaacttc gtgcagggag tacaaaatac tgtcgcagaa
      481 gacctgtcga aaaacggtct tgagctggaa agcgtttcac ttaccaactt taaccagacc
      541 tcgaaagaac atttcaatcc gaacaatgcc tttgacgccg aaggtttaac caaactgatt
      601 caggagacgg agcgccgtcg tcgcgaacgt aacgaagttg aacaggatgt agaagttgcg
      661 gtgcgtgaga aaaaccgtga tgcactttcg cgcaagttgg agattgaaca acaagaagcg
      721 tttatgacgc ttgagcagga gcagcaggtt aaaacccgta ctgccgaaca gaatgcacgt
      781 attgcggctt ttgaagctga acgtcgtcgt gaagcagagc agacgcgaat tctggctgaa
      841 cgacaaattc aggaaacgga gatcgagcgc gagcaggccg tccgctcaag aaaggttgag
      901 gctgaacgtg aagttcgtat taaagagatc gaacagcagc aggtcaccga aatcgccaac
      961 cagacgaaat cgatcgctat tgccgccaaa tcggaacaac agtcccaggc agaagcgcgt
     1021 gctaaccttg cactcgcaga agcagtaagt gcgcaacaaa acgtagaaac cactcgacag
     1081 accgcagaag ccgatcgtgc taaacaagtt gccctaatcg ctgccgcgca ggatgcagaa
     1141 accaaagcgg ttgaactgac cgtgcgggcg aaagcagaaa aagaagccgc agagatgcag
     1201 gcggcggcta tcgttaagtt agccgaagct acacgtaaaa agggtctggc ggaagcagaa
     1261 gcacaacgtg cgctgaacga tgctatcaac gtactttctg atgaacaaac cagccttaaa
     1321 ttcaaactgg ccttgttgca ggcgctacct gcggtaatag aaaaatccgt tgagccgatg
     1381 aaatctattg acggtatcaa gattattcag gtcgatggtc tgaatcgtgg cagcgctgcg
     1441 ggtgatgcaa acacgggtaa tgtggggggc ggaaacctgg cggaacaagc attatcagcc
     1501 gctctctctt accgcacaca ggcaccgctg attgactcct tgctcaatga aattggcgtt
     1561 tcaggcggct cactggcggc attgacttca cccttaacct caacaactcc cgtcgccgaa
     1621 aacgtagaat aaattttcag ctatgaacgt ccctggcaca aaaagccggg gattttttat
     1681 atctgcgttc cgctaaaaac tgcaaatgat caggtcgttg caacgttttg cgtgaccgct
     1741 cggggaaggc aaaactgcct ctgggaaagc gttgcgcgag gtccggcgct catcaacaat
     1801 cggggagtca gcaaagggct gaaacgggaa agcccctccc gaggaagggg ccttacagaa
     1861 ggaaagggtt atgatgaagc tcgtcatcat actgattgtg ttgttactcg taagtttcgc
     1921 agcttattaa cagccaatca gaggggggag aaatcctccc tcacccttgt tcctttactt
     1981 taggttgaaa aaaaatcagc gtcaagaagg tttcattaac acatatccct agcccaaaaa
     2041 gccggggatt ttttatatct gcgttccgct aaaaggtgca aatgctcagg acgttgcagc
     2101 gttttgcgtg accgctcggg gaaggcaaaa ctgcttcagg gaaagcgttg cgcggggtcc
     2161 ggcgctcatc aacaatcggg gagtcagcaa ggggctgaaa cgggaaagcc cctcccgagg
     2221 aaggggcctt atagaaggaa agggttatga tgaagttcgt catcatactg gttgtgttgt
     2281 tactgttaag tttcccgact tactaacaac tgatcagagg ggggagaaat cctcccttac
     2341 ccttgttcct ttactttagg ttgaaaaaac aacagcgtca ataggcctgc ctgctacgaa
     2401 gcgagatctg tgaaccgctt tccggttagc cttttttatc ctgttggatc ttcttgatga
     2461 tgttagtggt cgagcaaccg tcttcgaagt tgagcaccag cacttcgccg ccgttggccc
     2521 agacttcttt actcccggcg atctcttctg gtttatagtc gccgcccttc accagtaaat
     2581 ctggcaggat cccggcgatc aagcgctgcg gcgtgtcttc ttcaaacgac accacccagt
     2641 cgaccgcttc cagtgcgccc agcacaatca tacgctgttc gagcgggtta acggggcggg
     2701 aatccccttt cagccgtttg gtggaggcat cgctgttcac agcgacaatc agacggtcac
     2761 ccagtttgcg agcatttgcc agataggaga cgtgcccggc atgcaggatg tcaaagacac
     2821 cgttggtcat taccaccttt tcgccgcgtt tacgcgctgc cgctacggcc agcttcagtt
     2881 cctcttcggt catcacgcca aagccggtat ctgcgcgccc acgcactgca ttttccagct
     2941 cgatcggcga aaccgtggag gttcccagtt tgccgaccac cacgccagcc gccgcattgg
     3001 caaagaagca ggcttcttcc agcgaattac ccgctgccag cgttgccgcc aggacgccaa
     3061 tcaccgtgtc gcccgcaccg gtaacgtcat acacttcctg cgcctgggtt ggcatatgca
     3121 gcggcgcttt acccggttgc agcagcgaca taccctgttc ggaacgggtc actaacagag
     3181 ccgagagttc gtaatcggca atcagtttca tgccgcgctc aacaatctct tcttcggtct
     3241 tacatttacc gacaacagct tcaaattccg agagattcgg cgttaacagc gtagcgccgc
     3301 ggtagcgctc aaaatcggta ccttttggat caatcagcac cggaacgccc gctttacgcg
     3361 ccagttggat catctgctgt acgcttgcca gcgcaccttt ggcgtagtca gaaagcacca
     3421 gcgcgccaat cgaactcagc gcctgattaa tccgctcgtg cagcggctgc ggatcaacgc
     3481 cttcgaaacc ttcttcgaaa tccagacgga tcagctgttg gttgcgggaa agtacccgta
     3541 atttggtgat ggtcggatgc gtcggtacag aaacgaagtc gcatttgacg ttgacgtcgg
     3601 ccagagattt actcagcgcg cgcgctgcat cgtcaatgcc cgtcaacccg accaggcgtg
     3661 cattagcacc gagagaagcg atattcatcg ccacgttagc cgcgccgccc ggacgttctt
     3721 cgatggtatt cactttaacc acgggcaccg gcgcttccgg cgagatacgg ctggtgggac
     3781 cgtaccagta acgatccagc attacatcac caaccaccat cactcctgca cgttcaaact
     3841 ctgacagcgt tactttcatt cctgtctcct gagagattca aaatttgcgc gcgataatac
     3901 catacttcat tcttccacca gccacttctg ccagcttgcc cgcaccagat cacgctctgc
     3961 ggtgaagcaa tcctccgaca catggcccgg caattcctgt aatgccagat gatgaagttc
     4021 atcgcgcagc gtcgtgtaag cacgggtcag cgccatcgct tcctgctctt ccataatgtc
     4081 gttttgcgcc agcagctcca gaatacgcac gttgtctgac cagcgcgtta acttcggttt
     4141 ttcatgagcg tagcgcaaca ccagatattg ggtaataaat tcgatatcgg taattccgcc
     4201 ttcatcggct ttgatatcaa agcgattacg atgtttattg ccgagatgag cgcgcatttt
     4261 ctcgcgcatt tcccgcactt ccgtttgcag agttttacct tcacgcggca gcatcataat
     4321 ctcgcgacgc actgcgtcaa agtgcgcggt gagctgcgga tcgccgtaca ctacacgcgc
     4381 acgcaccagc gcctgatgct cccacgtcca ggcctcgttt ttctgataat cagcaaatgc
     4441 ttctgcggat gtcaccagca ttcccgccgc cccggacgga cgcagtcgtg catccacttc
     4501 atacaaaatg ccggaagagg ttcgcgtatt gaacagatgc ataatgcgtt gcgccagacg
     4561 cagataaaac tgtcgcccgt cgatttcccg ctcgccgtca gtcatcgcat ccattgggca
     4621 atcatggagg aagatcaggt caagatcgga actgtagcct aactcccagc cgcccagctt
     4681 gccgtagccg accaccgcaa aaccacggcc ttcgcgatcg ttgaggtgat ttggcttacc
     4741 gtagcgggcc accatttgaa cccacgcctg ctgaacgacg gcatctatca tagcctctgc
     4801 cagccaggtt aagtgatcgc tcactttcat caccggtagc gtaccagcga tatccgctgc
     4861 ggcgatgcgt aacagctgcg cctgtttgaa ctgacgcagc gcctcaagct gttgctcttc
     4921 gtcatcttcc ggcacgcgca gcaaatactg gcgcaactca tcgcggtagg catcggtcgc
     4981 cgtcggctgg taaagagtgt ttggatcgag caattcatcc agcaataatg gataacgcgc
     5041 cagctggctg gcaatcatcg gcgatgcggc acacagagaa atcaaatgtt taagcgccgc
     5101 agggaattca ctgagcaatt ctaaataggt ggtgcgggta acaatcccca ccagcaaggc
     5161 ggtaatgcgc gacagcgtaa cggcagcgtc ttcacgcgca cagacatcac ttagcagatg
     5221 tggcatcaga tggtcgagca cctgacgtcc tcgcggcccg atagtacgct tatccagctc
     5281 tttgcggaaa tcagcaatca gcgttaggac ctgtttgcga tcatcctcgc taagatgcgc
     5341 cagcactggc gtagtgtcat cttcctgcaa cgcatcctgc cacagctcac gccactgttc
     5401 cgacagcgac tcttcctgag tttcactttc gtcgtcgcca atcaattcat taaacacccg
     5461 gcgcacattg gtcatatgtg cggtcagcgc cccggtcagt tgcggccagt cagcaaagtc
     5521 catcgcccac gccagccgcg cacggttaag ctcatcagaa ggaagcgttt gggtttgttc
     5581 gtcgttaatg ctttgcagca ggttttccag acgccgcagg aacagatatg ccactcgcaa
     5641 ttgttcagca tcgttttcag aaagcagatg cagcgcggca atgacgctga gcgttggcag
     5701 taaagagcgc gactgcagcg acggttcgcg cccaccgcga atgagctgga acacctgaac
     5761 gataaattca atttcgcgaa tgccgcctgc gccgagtttg atattgtcgg tcaaaccacg
     5821 tcgacgcact tcacgggcaa tcatcccttt catgttgcgc agcgactgaa tcacgctgaa
     5881 atcgatgtaa cgacggaaaa caaacgggcg cagcatcgca cgcaactcgt tagcatagac
     5941 gccttcgcta tcgcccataa tccgcgcctt gaccatcgcg taacgctccc agtcgcgccc
     6001 ctgctcctgg taataatcct ccaacgcggc aaagctcagc accagcgggc cactttcgcc
     6061 aaacggacgc agccgcatat ccacgcgata gacgaagcca tcctgcgttg gttgatccaa
     6121 cactttaatc agccgctgcc ccatgcgggt aaaaaactgc gcgttatcca gttcccggcg
     6181 tccgccctgc gtacaaccat gttccggcca ggcaaaaatc agatcgatat ctgaggagaa
     6241 attcagttcc ccaccgccca gcttacccat gcctaaaatc agcagcggtt gcgcttcgcc
     6301 ctgcgcattg cacggcgttc cccactcgcg gcagcaagcg tcatacagcc agtcacgcgc
     6361 ggcgacaatc agcgtctccg ccagatggct gagctgctgc aatatgctct cttcagtaac
     6421 caaagccagc gtttgcgccc aggcgatgcg caccataatg cgccgccgga atagccgcag
     6481 ctcgcgcatt aacccggctt cgtcactcac attgctgagc gcctcctgca accatgccgc
     6541 gtaatgctgc cattcatcag cctgcggcga ttggctttcc agttccgtca gccactctgg
     6601 atgcgcaatc acgctgtcct gcacaaaatc actgaaagta agtactgact tcgcctgtgc
     6661 gctaagtgat ttctcggcta aaggctctgg cagccgctca acaacggtct gccagtactg
     6721 ctgtaacggt gaagagagcg gcttcataag cgattttatc cttgcctgat taacgttttc
     6781 cgctgtgcaa ccagaacggt tcctgattgt ttgcctcatt acggaaatgt tcaatttcaa
     6841 tgcgttgccc ggtcgcaata gcgtgacgca gcccctgcca gttctccagc caggcttgcg
     6901 cgacgacagg atcatagtaa cccgccagca acagtattga gtcaatatca cgcgtcagac
     6961 gtggcaactg gtcacggtag cgatcgccca acggctggca gaaaacgctt ttcagttcag
     7021 cggcatggcg ggaaagatgg atatcggcaa agcgtttgaa ggaatcgctc attttactct
     7081 gcgctttggc atctaaaaac ggctgccagg ctttgcttac cagccattcg gtcaacgcca
     7141 gcttcgccat tgccgttttg gtagagtaga ccgccgtcac ggcagaaacc gcagaagcga
     7201 tggtcgcttc gcattgagtc agcaaatcgc gtaagtgagt gctcgctttg cgcggcacaa
     7261 taccaccgaa cagcatcagt gtatgacgga ccagaccaat ggctgccagc acctgttctt
     7321 tcgccgcatc gttgccgcgt acccacagtt cttcatgata ctgccattgc gctaacgcca
     7381 gctcgagcgc cgcttccagc ccctgttcca catcggcttt tgccgcaaca tgcaaaatgg
     7441 tggtcggttt gatttcacgc gccggattgc cctgcgccag atgatagcca cgcgccgctt
     7501 tgctcaggct gccctggcgt aatccggttt gcgataccag ttggttcgcc agtttcagca
     7561 ccgcgcgcgt gtcgccgcta agcagttcca gttccagctc acagataggt tcagcaaatt
     7621 cccccgcttt cacctccccc tgatcgagag cgatttcaat tcggctgtca tcgaccgcca
     7681 ccagccattt ttcgcgataa aaatcggtgc tgaacagcgg ttgtacgcgg gaagcgagat
     7741 cggcgggcaa ttcgccgttc ggccagactt ccgtcggtaa ctgcgccagg tcgagcgtcg
     7801 gttcgctcaa cgccacgtta tattccgggc gctggtgtaa gccgcctgtc actcttcctg
     7861 caactttcat ggtcatctca tagcgaccgt tttcgccacg aatacgtaag cccatatcgt
     7921 gcccacgcag ccagttatcc ggcgtttcgt agtaaatatt cagcaactgc acggggtcat
     7981 ggtgctcgcc gcccagcgta ttgagatggt cacgcaacgc ctcaacggca ctgtgattaa
     8041 caataaactt taattcgatt tcctgagcca tggcctttac ttatcggtta tgtcacataa
     8101 gtgacgatga acggcgaact taatgcgatc ttttttgtca gtagatagta ttttgcgcca
     8161 aattgccatg caacgggcaa tttgacgggc gtaaaagttt gaagcagtgg caagacctga
     8221 cacagaggat tccgattgat gtcgaatgct ttgcgtagcg acactgatgc cactactatc
     8281 gttccacttt ccatgacaat aacgacagcc tgatgccaaa attacgcctg atcggattaa
     8341 ctttactcgc acttagcgcc actgccgtct cacacgctga agaaacgcgc tatgtttctg
     8401 atgaactgaa tacctgggtc cgtagcggtc cgggagatca ttatcgcctc gtgggcacgg
     8461 ttaacgccgg cgaggaagtg accttattac aaactgacgc caacaccaat tatgcccagg
     8521 tgaaagacag ctctggccgt accgcctgga tcccgttgaa acaacttagc actgagccaa
     8581 gcctgcgctc ccgtgtgcca gatctggaaa atcaggtcaa aaccctgacc gataaactca
     8641 ccaatatcga taacacctgg aatcagcgca ccgcagaaat gcagcaaaaa gtggcgcaga
     8701 gcgacagcgt gatcaacgga ttaaaagaag aaaatcagaa attgaaaaac gagctgattg
     8761 tcgcgcagaa aaaggtcgat gccgccagcg tacagctgga tgacaaacag cgcaccatca
     8821 tcatgcaatg gtttatgtat ggcggtggcg tgctggggct tggcttgctg ctcggtctgg
     8881 tactgccaca cctgatccca acgcgcaaac gcaaagagcg ctggatgaac taaatcgcct
     8941 tcttcgttgc actgtcttat tattaggaat tgtgtatttg acgaagggat gatggcgtga
     9001 agatttatct ggtcggtggt gctgttcggg atgcattgtt agggctaccg gtcaaagaca
     9061 gagattgggt ggtggtcggc agtacgccac aggagatgct cgacgcgggc taccagcagg
     9121 taggccgcga ttttcctgtg tttctgcatc cgcaaacgca tgaagagtat gcgctggcac
     9181 gtaccgaacg gaaatccggt tccggttaca ccggttttac ttgctatgcc gcaccggatg
     9241 tcacgctgga agatgatctt aagcgtcgcg atctgaccat taatgcgctg gcccaggacg
     9301 ataacggcga gattatcgac ccgtacaacg gtctgggcga tctgcaaaat cgtctgttgc
     9361 gccatgtttc ccccgctttt ggcgaagatc cgttacgcgt tctgcgcgtg gcgcgttttg
     9421 ctgcgcgtta tgcccacctc ggttttcgta ttgccgatga aactctgacg ctgatgcgcg
     9481 agatgaccca tgcgggtgaa ctggaacacc tgacgcctga acgggtatgg aaagagacgg
     9541 aaagcgccct caccacccgc aatccccagg tgttcttcca ggtactgcgc gattgcggtg
     9601 cacttcgcgt tttattcccg gaaattgacg ccctgtttgg cgttccggcc cctgccaggt
     9661 ggcatccgga aatcgacacc ggtattcata ccttaatgac gctctcaatg gcggcgatgc
     9721 tgagtccgca ggttgatgtc cgtttcgcaa ctttatgcca cgatctcggt aaaggactga
     9781 cgccgccaga actttggccg cgtcatcatg ggcatggccc ggcgggtgtt aagttagtgg
     9841 aacaactatg ccagcgtctg cgcgtgccaa atgaaattcg cgatttagcc agactggtgg
     9901 ctgagtttca cgatctcatc cacaccttcc caatgctgaa cccaaaaacc atcgtcaaat
     9961 tatttgattc catcgatgcc tggcgtaaac cgcagcgtgt cgagcaactg gcgctgacca
    10021 gcgaggctga cgtacgcggc agaaccggtt ttgaatcagc ggactacccg caaggccgtt
    10081 ggttgcgcga agcctgggaa gtggcgcagt cagtgccgac aaaagcggtc gttgaagcgg
    10141 gatttaaagg tgtggagatt cgcgaggagc tgacccgacg gcggattgcg gcggtagcca
    10201 gttggaagga acaacgttgc ccaaagcctg actgagtata aaactaaacg ttaacacgaa
    10261 ccatcccctc gccccttcgg ggagagggtg aggggaacag accagcaccg gtgcgaacaa
    10321 tcacccccac cccggccctc tccctacaga gcgagggaga aaaccaggcc tgctcccgaa
    10381 ccttttctca atcaaaagaa cacgacgtac accgcagccg ccacaataaa gcgataaatg
    10441 gcgaacggga taaacgaaat gcgcttaatc aattgcagga aggttttaat cgctatcagc
    10501 gccaccacaa aagcggtgat aaacccaacg gcaaacatcg ggatatcgcc ggttgtcagg
    10561 aagccccagc ttttgtagag atcgagcgcc gttgcgccca tcatcatcgg taccgccagc
    10621 aggaacgaga actcggaagc agcgtaacgg ctcacgccca tcagcatccc acctgaaatg
    10681 gtggccccgg aacgggagaa acccggccac agcgccagac actggaaaca gccaatcata
    10741 aacgcctgac gataggtcat atcatcaaga cccggcgcac gcggctcttt cggcttcagg
    10801 cattcggcgg caatcagcaa caaaccgcca acgaccagtg catacatcac atttatcggg
    10861 ttaaacaatg acttaatcgt gtcgtggaac aacagcccca gtaccaccgc cggaatcatc
    10921 cccagcaaaa tgtggatcag cgttaaacga cctttgcttt ctccttcgtg ctgcaacggg
    10981 cggccaaagt ggatgccaat caggccaaac agacgccgcc agaacatcac tactaccgcc
    11041 agaattgatc ctaactggat cacaacttca aaggttttcg ccgtgtcgcc ctcgaacccc
    11101 aacaagtgac cgacaataat catatggccc gtgctggata ccggcagaaa ttctgtcaat
    11161 ccttcgacca cacccaatat tgccgctatc agcagcgagt gcatatcgct catcaataaa
    11221 cccctaaatt attaaaatgt accgcttgtc cggactactg cagtaagacc aggttataac
    11281 cgtttggttt aacagctgta aaattaatta ttttctttca gattattgcc acgctcaatg
    11341 attacaccaa cattcgccgc ccgcgccact gcgcctggct tgctgagttt gatgcgcacc
    11401 cacggcgagt tgaagcgtgc taacagcagc tccgccacct cttcagccac gcgttccacc
    11461 agcgcaaaac gcgccccctc gacgtggctg accaccgttt ctgcaatgtc agcgtaactg
    11521 aggcaatccg ccacatcatc acttttcgcc gctttacggt tatcccatgc catttcgata
    11581 tcgaacacta acttctgttc gatggtctgt tcccagtcgt aaacaccaat agtggtgatt
    11641 accgaaagtt gctctataaa tacaatatcc atcacgtcct gcctgctttt tggctaaccg
    11701 gataccactt ccggcgaaat gtgcgtatta tccacagatt catcgttgaa cacgaatttt
    11761 caaaacggaa cagcttatga gtgcaatcgc gcctggaatg atcctcatcg cgtacctctg
    11821 cggctccatt tccagtgcca ttctggtttg ccgcttgtgt gggctgcccg atccgcgaac
    11881 cagcggctcc ggcaatccag gcgcaaccaa tgtgttacgt atcggtggca agggagcagc
    11941 cgtagcagta ctgattttcg acgttctgaa aggaatgttg cccgtctggg gcgcgtatga
    12001 attaggtgtc agccccttct ggctaggctt aattgccatc gccgcctgtc ttggacacat
    12061 ctggcccgtt ttcttcggat ttaaaggagg aaaaggcgtt gctaccgctt ttggtgccat
    12121 cgcacccatt ggctgggatc tcaccggagt aatggcggga acctggttac tgaccgtgct
    12181 attgagcgga tactcgtcgc tgggagcgat tgtcagtgca ctgattgctc cgttttatgt
    12241 ctggtggttt aagccacaat tcaccttccc agtttcgatg ctctcttgcc tgatcctgct
    12301 gcgtcatcat gacaacatcc agcgtctgtg gcgtcgtcag gagacaaaaa tctggacgaa
    12361 attcaaaaga aagcgcgaaa aggatcccga gtgatttctg gtggatctac atgacctgat
    12421 agccttcatc gggcttgccc agccgttgct ggcaccatgc cgccagaaat tccacgcaga
    12481 cacgtaattt catgctgcga tagagcggct cccggtaaac agcccagata ttggcgcttt
    12541 gtgcatactc cggcaatact tgcaccagtt tgccactctc cagaaacggc aacacatccc
    12601 actcggaacg cagcataatc cctttgccct ccagcgccca ttgcaacact atctcgccgc
    12661 tattggagga aagatgcccg ctaaccttca ccgatttttt ctcctgaccg ttccccaact
    12721 cccatattcc gtgggtcata tcgcgctctt tggtcaccag acagtcatga cgacttaatt
    12781 cctgtaatga ttgtggctgc ggatattttt gcagatactc aggtgctgcg cataatattc
    12841 ttttattttt cgttaacaga tgcgcaatat aataatcagg aatttcgtca ttaatacgaa
    12901 tatccagatc aatattatcc tgcactaaat caatttgccg atcgaacaat tcaaaatgca
    12961 cctgtaactc aggataattg cgcataagtt cggtaatggc tggcgcaata tggctgcgcc
    13021 caaaaccaaa actgcaacca atacgaatca tcccctccgg gcgcgttttg atttgcgtga
    13081 cgtcatcgac cagt
//
LOCUS       DADMJB010000118        12988 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.118, whole genome shotgun sequence.
ACCESSION   DADMJB010000118 DADMJB010000000
VERSION     DADMJB010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12988)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12988)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12988
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.118"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(14..520)
                     /gene="mug"
                     /locus_tag="JN078_002944"
     CDS             complement(14..520)
                     /gene="mug"
                     /locus_tag="JN078_002944"
                     /EC_number="3.2.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="G/U mismatch-specific DNA glycosylase"
                     /protein_id="HAY9042078.1"
                     /translation="MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQA
                     GFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEVSKQELHAGGRKLIEKIEDYQPQ
                     ALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELD
                     QALVVRGR"
     gene            645..720
                     /locus_tag="JN078_002945"
     tRNA            645..720
                     /locus_tag="JN078_002945"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:678..680,aa:Ile,seq:cat)
     gene            complement(774..1538)
                     /gene="nfeF"
                     /locus_tag="JN078_002946"
     CDS             complement(774..1538)
                     /gene="nfeF"
                     /locus_tag="JN078_002946"
                     /EC_number="1.16.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent ferric chelate reductase"
                     /protein_id="HAY9042079.1"
                     /translation="MNNSPRYPQRVRNDLRFRELTVLRVERISAGFQRIVLGGEALDG
                     FTSRGFDDHSKLFFPQPDAHFVPPTVTEEGIVWPEGPRPPSRDYTPLYDELRHELAID
                     FFIHDGGVASGWAMQAQPGDKLTVAGPRGSLVVPEDYAYQLYVCDESGMPALRRRLET
                     LSKLAVKPQVSALVSVRDNACQDYLAHLDGFNIEWLAHDEQAVDARLAQMQIPADDYF
                     IWITGEGKVVKNLSRRFEAEQYDPQRVRAAAYWHAK"
     gene            1826..2449
                     /locus_tag="JN078_002947"
     CDS             1826..2449
                     /locus_tag="JN078_002947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HAY9042080.1"
                     /translation="MSHHHEGCCKHEGQPRHEGCCKGEKSEHEHCGHGHQHEHGQCCG
                     GRHGRGGGRRQRFFGHGELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVIYP
                     TLDFLQEQSLITIREEEGGKKQIALTEQGAQWLEENREQVEMIEERIKARCVGAALRQ
                     NPQMKRALDNFKAVLDLRVNQSDISDAQIKKIIAVIDRAAFDITQLD"
     gene            complement(2603..4123)
                     /locus_tag="JN078_002948"
     CDS             complement(2603..4123)
                     /locus_tag="JN078_002948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311981.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HAY9042081.1"
                     /translation="MSSHPYVTQQNTPLADDTTLMSTTDLQSYITHANDTFVQVSGFT
                     LQELQGQPHNMVRHPDMPKAAFADMWFTLKKGEPWSGIVKNRRKNGDHYWVRANAVPM
                     VREGKISGYMSIRTRATDEEIAAVEPLYKALNAGRTSKRIHKGLVVRKGWLGKLPSLP
                     LRWRARGVMTLMFILLAAMLWFVAAPVVTYFLCVLVVLLASACFEWQIVRPIENVARQ
                     ALKVATGERNSVEHLNRSDELGLTLRAVGQLGLMCRWLINDVSSQVSSVRNGSETLAK
                     GTDELNEHTQQTVDNVQQTVATMNQMAASVKQNSATASAADKLSIIASNAAVQGGEAM
                     TTVIKTMDDIADSTQRIGTITSLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGE
                     VRHLASRSANAANDIRKLIDASADKVQSGSQQVHAAGRTMEDIVAQVKNVTQLIAQIS
                     HSTLEQADGLSSLTRAVDELNLITQKNAELVEESAQVSAMVKHRASRLEDAVTVLH"
     gene            4429..5919
                     /gene="ygjG"
                     /locus_tag="JN078_002949"
     CDS             4429..5919
                     /gene="ygjG"
                     /locus_tag="JN078_002949"
                     /EC_number="2.6.1.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine aminotransferase"
                     /protein_id="HAY9042082.1"
                     /translation="MITTFVFIPIFAIAAGVAQSLQYLNRYHVIREPPEHILNRLPSS
                     ASALACSAHALNLIEKRTLDHEEMKALNREVIEYFKEHVNPGFLEYRKSVTAGGDYGA
                     VEWQAGSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLD
                     PLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFH
                     GKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEP
                     IQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILC
                     LAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNL
                     LAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNEIGYNFASEMFRQRV
                     LVAGTLNNAKTIRIEPPQTLTIEQCELVIKAARKALAAMRVSVEEA"
     gene            complement(5961..6293)
                     /locus_tag="JN078_002950"
     CDS             complement(5961..6293)
                     /locus_tag="JN078_002950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-binding protein"
                     /protein_id="HAY9042083.1"
                     /translation="METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGEKTLQ
                     TVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERM
                     MPAGVRVV"
     gene            6512..7495
                     /gene="ebgR"
                     /locus_tag="JN078_002951"
     CDS             6512..7495
                     /gene="ebgR"
                     /locus_tag="JN078_002951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator EbgR"
                     /protein_id="HAY9042084.1"
                     /translation="MATLKDIAIEAGVSLATVSRVLNDDPTLNVKEETKHRILEIAEK
                     LEYKTSSARKLQTGAVNQHHILAIYSYQQELEINDPYYLAIRHGIETQCEKLGIELTN
                     CYEHSGLPDIKNVTGILIVGKPTPALRAAACALTDNICFIDFHEPGSGYDAVDIDLAR
                     ISKEIIDFYINQGVNRIGFIGGEDEPGKADIREVAFAEYGRLKQVVREEDIWRGGFSS
                     SSGYELAKQMLAQEDYPKALFVASDSIAIGVLRAIHERGLNIPQDISLISVNDIPTAR
                     FTFPPLSTVRIHSEMMGSQGVNLVYEKARDGRALPLLVFVPSKLKLRGTTR"
     gene            7679..10771
                     /gene="ebgA"
                     /locus_tag="JN078_002952"
     CDS             7679..10771
                     /gene="ebgA"
                     /locus_tag="JN078_002952"
                     /EC_number="3.2.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase subunit alpha"
                     /protein_id="HAY9042085.1"
                     /translation="MNRWENIQLTHENRLAPRAYFFSYDSVAQARTFARETSSLFLPL
                     SGQWNFHFFDHPLQVPEAFTSELMADWGHITVPAMWQMEGHGKLQYTDEGFPFPIDVP
                     FVPSDNPTGAYQRIFTLSDGWQGKQTLIKFDGVETYFEVYVNGQYVGFSKGSRLTAEF
                     DISAMVKTGDNLLCVRVMQWADSTYVEDQDMWWSAGIFRDVYLVGKHLTHINDFTVRT
                     DFDEAYCDATLSCEVVLENLAASPVVTTLEYTLFDGERVVHSSAIDHLAIEKLTSASF
                     AFTVEQPQQWSAESPYLYHLVMTLKDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYV
                     MLHGVNRHDNDHRKGRAVGMDRVEKDLQLMKQHNINSVRTAHYPNDPRFYELCDIYGL
                     FVMAETDVESHGFANVGDISRITDDPQWEKVYVERIVRHIHAQKNHPSIIIWSLGNES
                     GYGCNIRAMYHAAKALDDTRLVHYEEDRDAEVVDIISTMYTRVPLMNEFGEYPHPKPR
                     IICEYAHAMGNGPGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDHGNVWYKFGGD
                     YGDYPNNYNFCLDGLIYSDQTPGPGLKEYKQVIAPVKIHARDLTRGELKVENKLWFTT
                     LDDYTLHAEVRAEGETLATQQIKLRDVAPNSEAPLQITLPQLDAREAFLNITVTKDSR
                     TRYSEAGHSIATYQFPLKENTAQPVPFAPNNARPLTLEDDRLSCTVRGYNFAITFSKM
                     SGKPTSWQVNGESLLTREPKINFFKPMIDNHKQEYEGLWQPNHLQIMQEHLRDFAVEQ
                     SDGEVLIISRTVIAPPVFDFGMRCTYIWRIAADGQVNVALSGERYGDYPHIIPCIGFT
                     MGINGEYDQVAYYGRGPGENYADSQQANIIDIWRSTVDAMFENYPFPQNNGNRQHVRW
                     TALTNRHGNGLLVVPQRPINFSAWHYTQENIHAAQHCNELQRSDDITLNLDHQLLGLG
                     SNSWGSEVLDSWRVWFRDFSYGFTLLPVSGGEATAQSLASYEFGAGFFSTNLHSENKQ
                     "
     gene            10768..11217
                     /locus_tag="JN078_002953"
     CDS             10768..11217
                     /locus_tag="JN078_002953"
                     /EC_number="3.2.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase subunit beta"
                     /protein_id="HAY9042086.1"
                     /translation="MRIIDNLEQFRQIYASSKKWQRCVEAIENIDNIQPGVAHSIGDS
                     LTYRVETDSATDALFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLK
                     GCGETVEVHEGQIVICDIHEAYRFICNNAVKKVVLKVTIEDGYFHNK"
     gene            11280..12713
                     /locus_tag="JN078_002954"
     CDS             11280..12713
                     /locus_tag="JN078_002954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAY9042087.1"
                     /translation="MSDTKRNTIGKFGLLSLTFAAVYSFNNVINNNIELGLASAPMFF
                     LATIFYFIPFCLIIAEFVSLNKNSEAGVYAWVKSSLGGRWAFITAYTYWFVNLFFFTS
                     LLPRVIAYASYAFLGYEYIMTPVATTIISMVLFAFSTWVSTNGAKMLGPITSVTSTLM
                     LLLTLSYILLAGTALVGGVQPADPITVDAMIPNFNWAFLGVTTWIFMAAGGAESVAVY
                     VNDVKGGSKSFVKVIILAGIFIGVLYSVSSVLINVFVSSKELKFTGGSVQVFHGMAAY
                     FGLPEALMNRFVGLVSFTAMFGSLLMWTATPVKIFFSEIPEGIFGKKTVELNENGVPA
                     RAAWIQFLIVIPLMIIPMLGSNTVQDLMNTIINMTAAASMLPPLFIMLAYLNLRAKLD
                     HLPRDFRMGSRRTGIIVVSMLIAIFAVGFVASTFPTGANILTIIFYNVGGIVIFLGFA
                     WWKYSKYIKGLTAEERHIEATPASNVD"
BASE COUNT         3133 a         3488 c         3248 g         3119 t
ORIGIN      
        1 tcggtggcgt tttttatcgc ccacgcacta ccagcgcctg gtccagctcg cgatacgctt
       61 caaccagttt ctctagtgaa acgcgactta aaccgctggg atttggcagc acccaaatct
      121 gcgtcgaacc aatggtgagc gtttgtttcc cccactgtgc accgcgctgg ctgaatccct
      181 gttcatatgc ttgtttgccc agaatcgcca acgcctgcgg ctgataatct tcaatttttt
      241 caatcagctt acgcccacct gcgtgcagct cctgctttga aacttcattg gcttgcaccg
      301 ttggacggtc taccagtttg gtgacgccac aacgataatc cagcagatgc tgtgcctcct
      361 gcggcttcaa ctgacggtcg gtaaacccgg cctgatatat caccttccag aagcgatttg
      421 ctggatgagc aaagggaaaa ccagtcccgg cggatgaaag cccagggttg ataccgcaaa
      481 acacgacccg taaccctgga gccaaaatat cctcaaccat atttactcct ttctaacatc
      541 accaggaaaa gtataacgga ttgaaaatac attgtttata aaaacagcag gcgcacggta
      601 atggctggat tgcgacacgg agttacttta taatccgcta ccatggcccc ttagctcagt
      661 ggttagagca ggcgactcat aatcgcttgg tcgctggttc aagtccagca ggggccacca
      721 gatatagcaa aggctgacga gaaatcgtca gcctttttct ttttatatct cagttacttt
      781 gcgtgccagt aagccgctgc acgtacccgc tgtgggtcat actgttccgc ttcaaagcgg
      841 cggcttaaat tcttaacgac tttaccttcg ccggttatcc agatgaagta atcatcggca
      901 gggatttgca tctgcgccag acgcgcatct accgcctgct catcatgtgc cagccattcg
      961 atattaaaac catcaaggtg cgcgagataa tcctgacagg cgttatcccg cacgctaacc
     1021 agcgcactaa cttgcggttt aacggcaagt ttgctcaacg tttccaggcg gcggcgcagt
     1081 gcgggcattc cggattcatc gcagacatac agctgatacg cgtaatcttc cggcaccacc
     1141 agcgaaccgc gcggaccagc caccgtaagt ttatcgcccg gttgcgcctg catcgcccag
     1201 ccgctggcga ccccaccgtc gtgaataaag aaatcgatcg ccagttcatg gcgtagttcg
     1261 tcatacagcg gcgtatagtc acgcgacggt gggcgtggtc cttccggcca gacgatgccc
     1321 tcttccgtta ccgttggcgg cacaaagtga gcgtcaggtt gaggaaagaa gagtttgctg
     1381 tgatcgtcaa agccgcgcga tgtaaaaccg tccagcgcct cgccgccgag gacaatgcgc
     1441 tgaaaaccgg cgctgatgcg ctcaacgcgt aacacagtca gttcacggaa gcgcagatca
     1501 ttgcgaacgc gctgcgggta gcggggggag ttattcattg ttatcgcctt cgtgatggta
     1561 atcagatata tctaaataat tttcgtaaat gataatgatt gttaatcatg ataaatgcaa
     1621 gcgattagta gaactgatat gtctatagtc tgataagacg aaccgcctct tctcaggcat
     1681 cattactcaa cgccggatgc ggcgtgaacg ccttatccgg cctacgtgtg agatgagtcc
     1741 acatttaaaa atcattttta ttcttgcaag agtgctcata tcagatataa attagatata
     1801 tctaatcaag aaaaaggagg ctgatatgag ccatcatcac gaagggtgtt gtaaacatga
     1861 aggccagcca cgccatgagg gctgctgcaa aggtgagaag tcagaacacg agcactgcgg
     1921 acacggtcac cagcatgaac acggtcaatg ctgcggtggt cgccacggtc gcggcggcgg
     1981 tcgtcggcaa cgtttctttg gtcacggtga attgcgtctg gtgattctgg atattctctc
     2041 gcgcgatgac agccacggtt acgaattgat taaagcgatt gagaatctaa cccaggggaa
     2101 ttacacccca agcccgggcg tcatctaccc aacgctggat tttctgcagg agcagtcgct
     2161 gattaccatc cgcgaagagg aaggtggtaa gaagcagatt gcgctgaccg aacaaggcgc
     2221 gcagtggctg gaagaaaacc gcgaacaggt ggagatgatt gaagaacgca tcaaagcgcg
     2281 ttgcgttggc gcggcgctgc gccagaaccc gcaaatgaag cgggcgctgg ataattttaa
     2341 agcggtgctg gatttacgcg tcaaccagag cgatatcagt gatgcacaaa taaaaaagat
     2401 cattgcggtg atcgaccgcg ccgcttttga tattacgcaa ctggattaat cgccgcatcc
     2461 gccagtggcg cggtgcaatt gccggatgcg acgcttgacg cgccttatcc ggcctacacc
     2521 cactacacac cccgcaggcc tgataagatg cgccagcatc gcatcaggca ttgtgctcca
     2581 accgccggat ccggcatacc gattaatgca gcaccgtcac cgcgtcttcc agtcggctgg
     2641 cgcggtgttt caccatcgcc gacacctgcg cactctcttc caccagctca gcatttttct
     2701 gggtgatcag gttaagctca tccactgcac gggtcaggct ggaaagccca tcggcctgtt
     2761 ccagcgttga atggctaatc tgggcgatca actgggtgac gtttttcacc tgtgccacaa
     2821 tatcttccat cgtccgtccg gcggcgtgta cctgctgcga accggattgc accttatcag
     2881 cactggcatc aatcagcttg cgaatatcgt tggcagcatt agcgctgcgg ctggctaaat
     2941 gacgcacttc ccctgccacc actgcaaaac ctttgccctg ttcgccggca cgcgccgctt
     3001 ccaccgccgc attcagggcc agaatattgg tctgaaacgc aatatcgtta atcagcgaag
     3061 taatggtgcc aatgcgctgg gtactgtcgg cgatatcgtc cattgtcttg atcaccgtgg
     3121 tcatcgcctc cccaccctgc actgccgcat tactggcgat gatagaaagt ttatcggcag
     3181 ccgacgccgt ggcagagttc tgtttcaccg acgccgccat ttggttcatg gtcgccaccg
     3241 tttgctgaac gttatcaact gtctgctggg tatgttcgtt cagttcatcg gtgcctttcg
     3301 ccagcgtctc actgccattt ctgacactgg acacctggct tgagacatcg ttaattagcc
     3361 aacggcacat caggccaagc tgccctaccg cgcgtaatgt cagccccagc tcatcgctgc
     3421 gattcaggtg ctcaacacta ttacgctctc cggtcgccac cttcagtgcc tgacgggcga
     3481 cattttctat cgggcgcaca atctgccatt caaaacaagc gcttgccaac aataccacta
     3541 acacacagag gaaatacgtc accaccgggg cagcaacaaa ccaaagcatg gccgccagca
     3601 agataaacat cagggtcatc actccacgcg cccgccagcg aagcggtaat gaaggcagtt
     3661 tacccagcca gcctttacgc accaccaggc ctttatgaat acgcttactg gtacgtccgg
     3721 cgttcagcgc tttgtacagc ggctccaccg ccgcaatctc ttcatccgtc gcccgggtac
     3781 gaatcgacat atagccactg atttttccct cgcgcaccat cggtaccgca ttggcccgca
     3841 cccaataatg gtcgccattt ttgcggcgat ttttcacgat gccgctccag ggctcccctt
     3901 ttttcagggt gaaccacata tccgcaaacg ccgcttttgg catatccggg tgacgcacca
     3961 tgttgtgcgg ctgcccttgt aactcttgca aggtaaagcc gctcacctgc acaaaagtgt
     4021 cattagcatg agtgatatag ctttgcagat cggtagtgga catcagagtg gtatcgtccg
     4081 ccagcggggt attttgctgg gtgacatacg gatgagaaga catgttcgcg tcctatgcag
     4141 gttatatggt tgttaacttc ttgtcagagt ttatgtcggc cccgctgcgg ttatctttaa
     4201 ccgattaatt tgatttagat cgcaatttgc gattaaagca caaatctaat tccttgattt
     4261 aaaatacttt cactctgtta ctatacgaaa acgttaatta tcttgcccaa aatcaggcaa
     4321 ttatcgccct gaaaacgtgc atttgcacag caatcatcaa atccataccc gacaaaaacc
     4381 gtgcaaaata acaacgaatg ttaacaaata gcattaaata ctgcgcaaat gataaccaca
     4441 tttgtgttta tcccgatttt cgcgatcgca gccggagtgg cgcaatccct gcaatactta
     4501 aatcggtatc atgtgatacg cgagcctccg gagcatattt tgaacaggtt accttcgagc
     4561 gcatcggctt tagcgtgcag cgcccacgcc ctgaatctca ttgagaagcg aacgctggat
     4621 catgaggaga tgaaagcact taaccgagag gtgattgaat acttcaaaga gcatgtcaat
     4681 ccggggtttt tagagtatcg caaatctgtt accgccggcg gggattacgg agccgtagag
     4741 tggcaagcgg gaagtttaaa tacgcttgtc gacacccagg gacaggagtt tatcgactgc
     4801 ctgggaggtt ttggaatttt caacgtgggg caccgtaatc cagttgtggt ttccgccgta
     4861 cagaatcaac ttgcgaaaca accgctgcac agccaggagc tgctcgatcc gttacgggcg
     4921 atgttggcga aaacccttgc tgcgctaacg cccggtaaac tgaaatacag cttcttctgt
     4981 aatagcggca ccgagtccgt tgaagcagcg ctgaagctgg cgaaagctta ccagtcaccg
     5041 cgcggcaagt ttacttttat tgccaccagc ggcgcgttcc acggtaaatc acttggcgcg
     5101 ctgtcggcca cggcgaaatc gaccttccgc aaaccgttta tgccgttact gccgggcttc
     5161 cgtcatgtgc cgtttggcaa tatcgaagcc atgcgcacgg ctcttaacga gtgcaaaaaa
     5221 accggtgatg atgtggctgc ggtgatcctc gaaccgattc agggtgaagg tggcgtaatt
     5281 ctgccgccgc cgggctatct caccgccgta cgtaagctat gcgatgagtt cggcgcactg
     5341 atgatcctcg atgaagtaca aacgggcatg gggcgcacgg gcaagatgtt cgcctgcgag
     5401 catgagaacg tacagccgga tatcctctgc cttgccaaag cgctcggcgg cggcgtgatg
     5461 ccgattggcg cgaccatcgc cactgaagag gtgttttcag ttctgttcga caacccattc
     5521 ctgcatacca ccacctttgg cggcaacccg ctggcctgtg cggcggcgct ggcgaccatc
     5581 aatgtgttgc tggagcagaa cttactggct caggctgagc aaaaaggcga tatgttgctg
     5641 gacggtttcc gtcaactggc gcgggaatat cccgatctgg tacaggaagc gcgtggtaaa
     5701 gggatgttga tggcaattga gtttgttgat aacgaaatcg gctataactt tgccagcgag
     5761 atgttccgcc agcgcgtact ggtggccgga acgctcaata acgccaaaac gatccgcatt
     5821 gaaccgccac agacactgac cattgaacag tgtgaactgg tgatcaaagc ggcgcgtaag
     5881 gcgctggcgg ccatgcgagt aagtgtcgaa gaagcgtaat atcaaatcgg atggcgatac
     5941 gacgtcgcca tccgatcttt ttatacgacg cgtacgcccg caggcatcat ccgctccggc
     6001 gttaacaaca cgctttcact gccgtcatcg gtttccgcac acaacagcat gcattccgac
     6061 gtttcaccac gcattttcgc tttttgcaga ttgcataaga ccaccaccgt tttccccatc
     6121 agctcttctt cgctgtagta cggcaccagg ctggtcacgg tttgcagtgt tttttccccc
     6181 acatcaacct gtacgatgta cagcttgtcg gcgttttcat ggcgtttcac ttccacaatc
     6241 tttccgacgc gcatttccag acgtgcaaaa tcagcgtaag ccacggtttc cattgtttcc
     6301 ttccttcggg taaaatttta ctaaactata gcaaaagttt ttctcaatcc tgtaggctaa
     6361 aaatggagaa tgcaggcgtg atcacattcg tgagccgctg tgttaccgtt acagcgtcaa
     6421 agaaacgcgc tttatttact gaaaacaggt gacccgataa gtacttcctc tacaatgggg
     6481 gcgcacatca gggaaagtaa aaaaggtaaa catggcaaca ctaaaagaca tcgcaatcga
     6541 agctggcgta tccctggcga cagtatccag ggtcttaaat gacgatccga cattgaatgt
     6601 gaaagaagag acaaaacatc gcattctcga gatcgccgaa aagctggagt acaagaccag
     6661 tagtgcccgc aaactccaga caggtgcagt caaccaacac catattctgg ctatctacag
     6721 ctaccaacag gagctggaga tcaacgatcc ttactatctg gcgatccgcc acggcattga
     6781 aactcagtgc gaaaagctgg gcattgagct caccaactgt tatgaacaca gcggattacc
     6841 agacattaaa aacgtcaccg gtattttaat tgtcggcaaa cccacgcccg cccttcgcgc
     6901 cgccgcctgt gcgttgaccg acaatatctg ttttatcgac tttcacgaac ccggcagcgg
     6961 ttacgatgcg gtggatatcg atctggcacg catcagtaaa gaaatcatcg acttctatat
     7021 caatcagggc gttaatcgta ttggttttat tggcggtgaa gatgagccag gcaaagcgga
     7081 tattcgtgag gtcgcctttg cggaatatgg ccgactgaaa caagtggtac gcgaagagga
     7141 tatctggcgc ggaggctttt ccagttcgtc gggttatgaa ctggcaaaac agatgctggc
     7201 gcaggaagac tatccgaagg cactgtttgt tgcttccgat tccattgcta tcggcgtact
     7261 gcgggcaatt catgaacgag gcctgaacat cccacaggat atttcgctta tcagcgttaa
     7321 cgatatcccc accgcgcgat ttacctttcc gccgctctcc accgtgcgca tccattccga
     7381 gatgatggga agtcagggcg ttaacctggt gtatgaaaaa gcccgcgatg gtcgcgcgct
     7441 gccgctgtta gtcttcgttc ccagcaaatt aaaactgcgc ggcacgaccc gttaaatccc
     7501 cttacacact gtccggcaat cgtttttgcc ggacagtgct gccgtttatt ttcgtgatcc
     7561 agttaaagta aatgcattta tctgctactt tttagtaaaa attttactaa actccccagc
     7621 aattacacaa actaccatca ccatgaatgg ttccgatttc tctctaccgg gaggccctat
     7681 gaatcgctgg gaaaacattc agctcaccca cgaaaaccga cttgcgccgc gtgcgtactt
     7741 tttttcatat gattctgttg cgcaagcgcg tacctttgcc cgcgaaacca gcagcctgtt
     7801 tctgccctta agcggtcagt ggaatttcca cttttttgac catccgctgc aagtaccaga
     7861 agccttcacc tctgagttaa tggctgactg ggggcatatt accgtccccg ccatgtggca
     7921 aatggaaggt cacggcaaac tgcaatatac cgacgaaggt tttccgttcc ccatcgatgt
     7981 gccgtttgtc cccagcgata acccaaccgg tgcctatcaa cgtattttca ccctcagcga
     8041 cggctggcag ggtaaacaga cgctgattaa atttgacggc gtcgaaacct attttgaagt
     8101 ctatgttaac ggtcagtatg tgggtttcag caagggcagt cgcctgaccg cagagtttga
     8161 catcagcgcg atggttaaaa ccggcgacaa cctgttgtgt gtgcgcgtga tgcagtgggc
     8221 ggactctacc tacgtggaag accaggatat gtggtggtca gcggggatct tccgcgatgt
     8281 ttatctggtc ggaaaacacc taacgcatat taacgatttc actgtgcgta ccgactttga
     8341 cgaagcctat tgcgatgcca cgctttcctg cgaagtggtg ctggaaaatc tcgccgcctc
     8401 ccctgtcgtc acgacgctgg aatataccct gtttgatggc gaacgcgtgg tgcacagcag
     8461 cgccattgat catttggcaa ttgaaaaact gaccagcgcc agctttgctt ttactgtcga
     8521 acagccgcag caatggtcag cagaatcccc ttatctttac catctggtca tgacgctgaa
     8581 agacgccaac ggcaacgttc tggaagtggt gccacaacgc gttggcttcc gtgatatcaa
     8641 agtgcgcgac ggtctgttct ggatcaataa ccgttatgtg atgctgcacg gcgtcaaccg
     8701 tcacgacaac gatcatcgca aaggccgcgc cgttggaatg gatcgcgtcg agaaagatct
     8761 ccagttgatg aagcagcaca atatcaactc cgtgcgtacc gctcactacc cgaacgatcc
     8821 gcgtttttac gaactgtgtg atatctacgg cctgtttgtg atggcggaaa ccgacgtcga
     8881 atcgcacggc tttgctaatg tcggcgatat cagccgtatt accgacgatc cgcagtggga
     8941 aaaagtctac gtcgagcgca ttgttcgcca tatccacgcg cagaaaaacc atccgtcgat
     9001 catcatctgg tcgctgggca atgaatccgg ctatggctgt aacatccgcg cgatgtacca
     9061 tgcggcgaaa gcgctggatg acacgcgact ggtgcattac gaagaagatc gcgatgctga
     9121 agtggtcgat attatttcca ccatgtacac ccgcgtgccg ctgatgaatg agtttggtga
     9181 atacccgcat ccgaagccgc gcatcatctg tgaatatgct catgcgatgg ggaacggacc
     9241 gggcgggctg acggagtacc agaacgtctt ctataagcac gattgcattc agggtcatta
     9301 tgtctgggag tggtgcgacc acgggatcca ggcacaggac gaccacggca atgtctggta
     9361 taaattcggc ggcgactacg gcgactatcc caacaactat aacttctgtc ttgatggttt
     9421 gatctattcc gatcagacgc cgggaccggg cctgaaagag tacaaacagg ttatcgcgcc
     9481 ggtaaaaatc cacgcgcggg atctgactcg cggcgagttg aaagtcgaaa ataaactgtg
     9541 gtttaccacg cttgatgact acaccctgca cgcagaggtg cgcgccgaag gtgaaacgct
     9601 cgcgacgcag cagattaaac tgcgcgacgt tgcgccgaac agcgaagccc ccttgcagat
     9661 cacgctgccg cagctggacg cccgcgaagc gttcctcaac attacggtga ccaaagattc
     9721 ccgcacccgc tacagcgaag ccgggcattc tatcgccact tatcagttcc cgctgaagga
     9781 aaacaccgcg cagccagtgc ctttcgcacc aaataatgcg cgtccgctga cgctggaaga
     9841 cgatcgtttg agctgcaccg ttcgcggcta caacttcgcg atcaccttct caaaaatgag
     9901 tggcaaaccg acatcctggc aggtaaatgg cgagtcgctg ctgacccgcg agccaaagat
     9961 caacttcttc aagccgatga tcgacaacca caagcaggag tacgaagggt tgtggcagcc
    10021 gaatcatttg cagatcatgc aggaacatct gcgcgacttt gccgtagaac agagcgatgg
    10081 tgaagtgttg atcatcagcc gcacagttat tgcaccgccg gtgtttgact tcgggatgcg
    10141 ctgtacctac atctggcgca tcgctgccga tggccaggtt aacgtggcgc tttccggcga
    10201 gcgttacggc gactatccgc acatcattcc gtgcatcggt ttcaccatgg ggattaacgg
    10261 cgaatacgat caggtggcgt attacggtcg tggaccgggc gaaaactacg ccgacagcca
    10321 gcaggctaac atcatcgata tctggcgcag caccgtcgat gccatgttcg agaactatcc
    10381 cttcccgcag aacaacggca accgtcagca tgtccgctgg acggcactga ctaaccgcca
    10441 cggcaacggt ctgctggtgg ttccgcagcg cccaattaac ttcagcgcct ggcactatac
    10501 ccaggaaaac atccacgctg cccagcactg taacgagctg cagcgcagtg atgacatcac
    10561 cctgaacctc gaccaccagc tacttggcct cggctccaac tcctggggca gcgaggtgct
    10621 ggactcctgg cgcgtctggt tccgtgactt cagctacggc tttacgttgc tgccggtttc
    10681 tggcggagaa gctaccgcgc aaagtctggc gtcgtatgag ttcggcgcag ggttcttttc
    10741 cacgaatttg cacagcgaga ataagcaatg aggatcatcg ataacttaga acagttccgc
    10801 cagatttacg cctctagcaa gaagtggcaa cgctgcgttg aagcgattga aaatatcgac
    10861 aacattcagc ctggcgtcgc ccactccatc ggtgactcat tgacttaccg cgtggagaca
    10921 gactccgcga ccgatgcgct atttaccggg catcgacgct attttgaagt gcattactac
    10981 ctgcaagggc agcaaaaaat tgaatatgcg ccgaaagaga cattacaggt agtggaatat
    11041 tatcgtgatg aaactgaccg tgaatattta aaaggctgcg gagaaaccgt tgaggtccac
    11101 gaagggcaaa tcgttatttg cgatatccat gaagcgtatc ggtttatctg caataacgcg
    11161 gtcaaaaaag tggttctcaa agtcaccatc gaagatggtt atttccataa caaataacaa
    11221 ctacggcggc aaaaggagtt tgccgccacc gctaccctac acattttcgg agatgtgtta
    11281 tgtctgatac caaacgtaat acaatcggca aattcggctt gctctcgctg acttttgctg
    11341 ccgtttacag ctttaacaac gttatcaata ataatattga gcttggactg gcctcggcac
    11401 cgatgttttt cctcgcgacg attttttatt ttattccctt ctgtctgatc atcgcagaat
    11461 ttgtttcgtt aaataaaaac tcagaagccg gtgtctacgc gtgggtaaaa agttcgctgg
    11521 gcggacgttg ggcatttatt actgcctata cctactggtt cgtaaacctg ttctttttca
    11581 cctcactgtt gccgcgcgtt attgcttatg cttcgtatgc cttcctcgga tacgaatata
    11641 ttatgacgcc ggttgccacc accattatca gtatggtgct gttcgccttc tccacctggg
    11701 tttccaccaa cggggcgaaa atgttggggc caattacctc cgtcacttca acgctgatgc
    11761 tgctgttaac gctctcctac attttactgg caggtacggc gctggttggc ggcgtacagc
    11821 ctgctgaccc catcaccgtt gacgcgatga tcccgaactt caactgggcg ttcctcggcg
    11881 ttaccacctg gatctttatg gccgcaggtg gcgcggagtc cgtcgctgtg tacgttaacg
    11941 acgtcaaagg cggttcgaaa tcgttcgtta aagtgatcat cctcgccggg atttttatcg
    12001 gcgtactgta ttccgtctcc tcggtgctga ttaacgtctt cgtcagcagc aaagagttga
    12061 aatttaccgg cggatcggtg caggtattcc atggcatggc ggcgtatttt ggtctaccgg
    12121 aagcgttgat gaatcgcttt gtcggtctgg tgtcctttac cgcgatgttc ggttccctgc
    12181 tgatgtggac cgcaacgccg gtgaaaattt tcttctccga aatcccggaa ggcatctttg
    12241 gtaagaaaac cgtcgaactg aacgaaaacg gcgttccggc gcgcgcagcg tggatccagt
    12301 tcctgatcgt catcccgctg atgattatcc cgatgctcgg ttccaatacc gtgcaggatc
    12361 tgatgaatac tattattaat atgaccgccg cagcgtccat gcttccgccg ttattcatca
    12421 tgctggctta cctgaattta cgcgccaaat tagatcacct gccacgcgat ttccgtatgg
    12481 gctcccgccg caccggtatt atcgttgttt caatgctgat tgcgatattt gccgtagggt
    12541 ttgtcgcttc gacattcccg actggcgcga atattctgac catcattttt tataacgtcg
    12601 gcggtattgt tatcttcctt ggctttgcgt ggtggaaata cagtaaatat ataaagggat
    12661 taacggctga agagcgccat attgaagcga cgccagccag caatgttgat taagcagaat
    12721 aataaaaaat gagcaggcat tttccctctt cctggatgag gagagggaaa atagtttctg
    12781 cctttatatt tttataatta caacgataaa aggctgtact ttttctttag ctcatggatt
    12841 aacacaatga aattaatcac tgcaccatgc agagcattac ttgctctgcc gttttgctac
    12901 gccttttctg cggcaggaga agaagcacgt ccggcagaac atgacgacac aaaaacaccc
    12961 gcaattacct cgacatcttc tccttcat
//
LOCUS       DADMJB010000119        12952 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.119, whole genome shotgun sequence.
ACCESSION   DADMJB010000119 DADMJB010000000
VERSION     DADMJB010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12952)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12952)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12952
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.119"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(234..1574)
                     /gene="fadL"
                     /locus_tag="JN078_002955"
     CDS             complement(234..1574)
                     /gene="fadL"
                     /locus_tag="JN078_002955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708225.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid transporter FadL"
                     /protein_id="HAY9042088.1"
                     /translation="MSQKTLFTKSALAVAVALISTQAWSAGFQLNEFSSSGLGRAYSG
                     EGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTA
                     WVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYR
                     LNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTPQGQALAATANGIDS
                     NTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYG
                     LPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATST
                     SGNTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRF
                     WLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF"
     gene            1946..2230
                     /locus_tag="JN078_002956"
     CDS             1946..2230
                     /locus_tag="JN078_002956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF406 family protein"
                     /protein_id="HAY9042089.1"
                     /translation="MSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTL
                     AALTEKARSVESEPCKISPTFTEESDGVRLDIDFTFACEAEMLIFQLGLR"
     gene            2410..3720
                     /gene="fadI"
                     /locus_tag="JN078_002957"
     CDS             2410..3720
                     /gene="fadI"
                     /locus_tag="JN078_002957"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase FadI"
                     /protein_id="HAY9042090.1"
                     /translation="MGQVLPLVTRQGDRIAIVSCLRTPFARQATAFHGIPAVDLGKMV
                     VGELLARSEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATS
                     FQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLF
                     SRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWS
                     DGKLKEEVMTAFIPPYKQPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANSTPLT
                     DGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLFGPAWSTPLALERAGLTM
                     SDLTLIDMHEAFAAQTLANIQLLGSERFACEVLGRAHATGEVDDSKFNVLGGSIAYGH
                     PFAATGAWMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLEAE"
     gene            3720..5864
                     /gene="fadJ"
                     /locus_tag="JN078_002958"
     CDS             3720..5864
                     /gene="fadJ"
                     /locus_tag="JN078_002958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid oxidation complex subunit alpha FadJ"
                     /protein_id="HAY9042091.1"
                     /translation="MEMASAFTLNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIK
                     QLRENKELRGVVFISAKPDNFIAGADINMIGNCKTVQEAEALARQGQQLMAEIHALPI
                     PVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIG
                     VSTTLEMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKDRPSSRPLPVRERI
                     LAGPLGRALLFKMVGKKTEHKTQGNYPATERILEVVETGLAQGTSSGYDAEARAFGEL
                     AMTPQSQALRSIFFASTDVKKDPGSDAPPAPLNSVGILGGGLMGGGIAYVTACKAGLP
                     VRIKDINPQGINHALKYSWDQLEGKVRRRHLKASERDKQLALISGTTDYRGFAHRDLI
                     IEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVIGLHFFSP
                     VEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIR
                     MLTKGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGERFSAPANVV
                     SSILNDDRKGRKNGRGFYLYGQKGRKSKKQVDPAIYPLIGAQGQGRLSAPQVSERCVM
                     LMLNEAVRCVDEQVIRSVRDGDIGAVFGIGFPPFLGGPFRYIDSLGAGEVVAIMQRLA
                     TQYGSRFTPCERLVEMGARGESFWKTTATDLQ"
     gene            6067..6552
                     /gene="sixA"
                     /locus_tag="JN078_002959"
     CDS             6067..6552
                     /gene="sixA"
                     /locus_tag="JN078_002959"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohistidine phosphatase SixA"
                     /protein_id="HAY9042092.1"
                     /translation="MQVFIMRHGDAALDAASDSVRPLTTNGCDESRLMANWLKGQKVE
                     IERVLVSPFLRAEQTLEEVGDCLNLPSSAEVLPELTPCGDVGLVSAYLQALTNEGVAS
                     VLVISHLPLVGYLVAELCPGETPPMFTTSAIASVTLDESGNGTFNWQMSPCNLKMAKA
                     I"
     gene            7227..7487
                     /locus_tag="JN078_002960"
     CDS             7227..7487
                     /locus_tag="JN078_002960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HAY9042093.1"
                     /translation="MSKFVKTAIAAAMVMGVFTSTATIAAGNNGTARFYGTIEDSVCS
                     IVPDDHKLEVDMGDIGAEKLKNNGTTTPKSFQIRLQDCVFDT"
     gene            7494..7790
                     /locus_tag="JN078_002961"
     CDS             7494..7790
                     /locus_tag="JN078_002961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY9042094.1"
                     /translation="MTTTFTGTVSSANSGNYYTIFNTDTGAAFNNVSLAIGDSLGTSY
                     KSGMGIDQKIVKDTSTNKGKAKQTLNFKAWLVGAADAPDLGNFEANTTFQITYL"
     gene            7872..10514
                     /gene="yfcU"
                     /locus_tag="JN078_002962"
     CDS             7872..10514
                     /gene="yfcU"
                     /locus_tag="JN078_002962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001112832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial usher protein YfcU"
                     /protein_id="HAY9042095.1"
                     /translation="MPDHSLFRLRILPWCIALAMSGSYSSVWAEDDIQFDSRFLELKG
                     DTKIDLKRFSSQGYVEPGKYNLQVQLNKQPLAEEYDIYWYAGEDDASKSYACLTPELV
                     AQFGLKEDVAKNLQWSHDAKCLKSGQLEGMEIKADLSQSALVISLPQAYLEYTYPDWD
                     PPSRWDDGISGIVADYSINAQTRHEENGGDDSNEISGNGTVGVNLGPWRMRADWQTNY
                     QHTRSNDDDEFSGDETQKKWEWSRYYAWRALPSLKAKLALGEDYLRSDIFDGFNYVGG
                     SVSTDDQMLPPNLRGYAPDISGVAHTTAKVTVSQMGRVIYETQVPAGPFRIQDLGDSV
                     SGTLHIRIEEQNGQVQEYDISTASMPYLTRPGQIRYKIMMGRPQEWGHHVEGEFFSGA
                     EASWGIANGWSLYGGALGDENYQSAALGVGRDLSTFGAVAFDVTHSHTKLDKDTAYGK
                     GSLDGNSFRVSYSKDFDQLNSRVTFAGYRFSEENFMTMSEYLDASDSGMVRTGNDKEM
                     CTATYNQNFRDAGVSVYLNYTRHTYWDREEQINYNIMLSHYFNMGSIRNVSISMTGYR
                     YEYDNQADKGMYISLSMPWGDNSTVSYNGNYGSGTDSSQVGYFSRVDDATHYQLNVGT
                     SDKHTSVDGYYSHDGSLAQVDLSANYHEGQYTSAGLSLQGGATLTAHGGALHRTQNMG
                     GTRLLIDADGVADVPVEGNGAAVYTNMFGKAVVSDVNNYYRNQAYIDLNRLPENAEAT
                     QSVVQATLTEGAIGYRKFAVISGQKAMAVLRLSDGSHPPFGAEVKNDNEQTVGLVDDD
                     GNVYLAGVKPGEHMSVFWSGVAHCDINLPDPLPADLFNGLLLPCQHKGNVAPITSPAV
                     KPAIQEQTQRVTPTEPPTSISVNQ"
     gene            10534..11286
                     /locus_tag="JN078_002963"
     CDS             10534..11286
                     /locus_tag="JN078_002963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000482750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
                     /protein_id="HAY9042096.1"
                     /translation="MFNLTNTAKIVVPALALLATAVSFSSHASVTPDRTRLVFNESDK
                     SISVTLRNNDPTLPYLAQSWIEDAKGNKISSPLAVLPPVQRIDAMMNGQVKVQGLPDI
                     NKLPADRESVFYFNVREISPKSNKPNTLQIALQTRIKLFWRPKALENTSMKSPWQHKV
                     TLIRNGQDFTVNNPTPYYVIISNASAKKGGNPPAGFTPLMMEPKTSAPLNAKMDSVPV
                     LTYINDYGARMPLYFKCTGNSCQVDEEQSRKG"
     gene            11302..11811
                     /locus_tag="JN078_002964"
     CDS             11302..11811
                     /locus_tag="JN078_002964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001733155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY9042097.1"
                     /translation="MSHKFVAGAGLLVLAGWGISGLAVAGSDIKQVDLTLRILVDGPP
                     PCSVKGSAVKFGNVIINRIDGTNYQQDAKYTLNCGNKVSDDLRMQLKGNTAVINGETV
                     LSTDIAGLGVRIENAADNSLFAVGENNWTPFNVNTQPQLKAVPVKQSGVQLTPSEFNA
                     TMTMVVDYQ"
     gene            11808..12296
                     /locus_tag="JN078_002965"
     CDS             11808..12296
                     /locus_tag="JN078_002965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001709066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY9042098.1"
                     /translation="MKKFLLLLLCAGCGAVLAAEDDITFHGTLMSPPACSISGGQTIE
                     VQFRDLIIDSIDGNYGRQKVDYELSCDSDVRDPEWNMTLSWTGTATSYNDSAIETDVP
                     GFGIELQHDGQRFKLNEPLSINATDFSQKPKLEAVPVKAADAVLTDTTFSAYATLRVD
                     YQ"
     gene            12293..12832
                     /locus_tag="JN078_002966"
                     /pseudo
     CDS             12293..12832
                     /locus_tag="JN078_002966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416836.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
BASE COUNT         3260 a         3087 c         3439 g         3166 t
ORIGIN      
        1 gtatcctgga aatgcagaaa agtaaactct ttgagaagga cgagcagaac gcctgaaaat
       61 atgcctttcc cttcaggttt gtctgtggat accgcttatt gatttgaaag ggcaagcggc
      121 caacaggctg tttgcaaaac tcaggaggta agcaatgagg acactacttt cggtgaagtg
      181 ggggagttaa agtcacctgc tatgcaggtg actttatcca ggcgaacgcg ttatcagaac
      241 gcgtagttaa agttagtacc gaacagccag gctttacctt cagactcgaa ctggtatggg
      301 ccttcgttaa ttttcacgct ctgaccgtgc atataagaaa caccaacgtc gactgaagca
      361 tctttattaa atgcgtaagt cgtacctgca ctcagccaga aacggtcctg gtccggaatg
      421 gagatagaac gattctgagc cggaactggg ctgtcatcaa aggcgatacc ggtacggaag
      481 gtccagttat catcgtagta ataagtggta cccaacgcga tgcggtaagc atctttaaag
      541 ccttcatgtt tctggaacag cgtgttgcca ctggttgagg tcgctttcag ctgctggaac
      601 tgactccagc tggtgtaagc caggctatag tgaatcgccc actgtggatc aacacggtta
      661 taacctgaca cttcccacat ttcaggcagg ttcagcgtca gataacccga ttgcgttgcg
      721 ccacctgtcg cggtaggaat tggcaaaccg tagttattaa acgcacgatt aagatcgctg
      781 ctgtagttac ctttgaagtc aattttcact tcagaacggt aggtcagtgc atagcggtta
      841 tttttatcca gttcatacag gattccggcg ttccagccaa agccccactg gttaccgttc
      901 agatgagcga ttttggtatt actgtcgata ccgttggcgg tagctgccaa tgcttgccct
      961 tgaggagttt gcccggcagg agattgcata atctgaccag caaccaactg ccccagatcg
     1021 cctgcgaaac gttcaatttt cgcgcgagcg tagacggcgt tgaaaccaag accaaagctc
     1081 catgcattat ttaagcgata cgcaccgctt aagttcaggt tcatggtttc aaggtcagtt
     1141 gtacccccga cagagccgcc tgcataagta tcattaaact ctgttgccag accatagtta
     1201 gaggtaatag aagcgcccca accaaattgg tcgttaatcg gtgcaacaaa gtgcatgttc
     1261 ggaacccatg ccgtaggcgc gatgttatcg gctttcaggc tacgaccaga cggagacgtt
     1321 ccgctgatat tcacatccgg gtcaatataa accgcacccg cagaaaatgt cgggcggtca
     1381 aacatggtaa tcaatgcggg gttacggcta acgttacctg catcatcggc aattgcgcct
     1441 tcccctgaat aagcccggcc caggccagag gaagaaaatt cgtttaactg aaagcctgcc
     1501 gaccaggcct gggtggagat aagtgccact gcgactgcga gagcagactt tgtaaacagg
     1561 gttttctggc tcatgaccat aacctcaatg atttattttt atacaaacta tgttacgtgc
     1621 tgtaacagga gcgcgaagtg tagggtctga ggtacatctt agaaatcaga ccagtggcga
     1681 gagtataggt cggaccagct ggaatgttgc aagtatgttt ccatcttttt tcaaatatga
     1741 tctaagaaac gcgatccagc tggcaaaatt tggaggttgc gcactcgcgg attcgggtga
     1801 attttgtttt agatcatttt taagtgtgat ttcggtcact tatccgattt tgcagaatta
     1861 acaactggag cagcactttc cggaagcgta aaatatccac aacgtttatc tggcaccttg
     1921 ggtgcacata cagaggaaat caacgatgag taaatgtagt gctgatgaaa ccccggtttg
     1981 ctgctgtatg gatgttggca ccattatgga caactccgac tgcaccgcgt cttacagccg
     2041 cgtgtttgca aaccgcgcag aagcagaaca aacgctggcg gcgttgactg aaaaagcccg
     2101 tagcgtggaa tccgaaccgt gcaaaatctc cccgactttc actgaagagt ctgacggtgt
     2161 gcgcctggat atcgatttca cttttgcctg cgaagctgaa atgctgatct tccagctggg
     2221 tctgcgttaa ttcctctcgg gtacgttcgc ccctgtcagt tgctggcagg ggcgttttct
     2281 tttctttctc ctgtcttcac tgtgtcatag ctcccacttt cctttttctc cgcttggcta
     2341 aatgtaaaaa aatggttaag actataatca ggtcagacca ctttatttat ttttttacag
     2401 gggagtgtta tgggtcaggt tttaccgctg gttacccgcc agggcgatcg tatcgccatt
     2461 gttagctgtt tacgtacgcc ttttgcccgc caggcgacgg cttttcatgg cattcccgcg
     2521 gttgatttag ggaagatggt ggtaggcgaa ctgctggcac gcagcgagat ccccgctgaa
     2581 gtgattgaac agctggtctt tggtcaggtc gtacaaatgc ctgaagcccc caacattgcg
     2641 cgtgaaattg ttctcggtac cggaatgaat gtgcataccg atgcttacag cgtcagccgc
     2701 gcttgcgcta ccagtttcca ggcggttgca aacgtcgcag aaagcctgat ggcgggaact
     2761 atccgagcgg ggattgccgg tggggcagat tcctcttccg tattgccaat tggcgtcagt
     2821 aaaaaactgg cgcgcgtgct ggttgatgtc aacaaagctc gaaccatgag ccagcgcctg
     2881 aaactcttct ctcgcctgcg tttgcgcgat ttaatgcccg taccgcctgc agtagcagaa
     2941 tattctaccg gcttgcggat gggtgacacc gcagagcaaa tggcgaaaac ctacggcatc
     3001 acccgagaac agcaagatgc attagcgcac cgttcgcatc agcgtgccgc tcaggcatgg
     3061 tcagacggaa aactcaaaga agaggtgatg actgccttta tccctcctta taaacaaccg
     3121 cttgtcgaag acaacaatat tcgcggtaat tcctcgcttg ccgattacgc aaagctgcgc
     3181 ccggcgtttg atcgcaaaca cggaacggta acggcggcaa acagtacgcc gctgaccgat
     3241 ggcgcggcag cggtgatcct gatgactgaa tcccgggcga aagaattagg gctggtgccg
     3301 ctggggtatc tgcgcagcta cgcatttact gcgattgatg tctggcagga catgttgttc
     3361 ggtccggcct ggtcaacacc gctggcgctg gaacgtgccg gtttgacaat gagcgatctg
     3421 acattgatcg atatgcacga agcctttgca gctcagacac tggcgaatat tcagttgctg
     3481 ggtagtgaac gttttgcttg tgaagtactg gggcgtgcac atgccactgg cgaagtggac
     3541 gatagcaaat ttaacgtgct tggcggttcg attgcttacg ggcatccctt cgcggcgacc
     3601 ggcgcgtgga tgattaccca gacattgcat gaacttcgcc gtcgcggcgg tggatttggt
     3661 ttagttaccg cctgtgctgc cggtgggctt ggcgcggcaa tggttctgga ggcggaataa
     3721 tggaaatggc atcagcgttt actcttaatg ttcgtctgga caacattgct atcatcacca
     3781 tcgacgtacc ggatgagaaa atgaataccc tgaaggcgga atttgcctcg caggtgcgcg
     3841 ccattattaa gcaactccgt gaaaacaaag agttgcgcgg cgtggtgttt atctccgcga
     3901 aaccggacaa ttttatcgcc ggagcagaca tcaacatgat cggcaactgc aaaacggtgc
     3961 aagaagcgga agctctggcg cggcagggcc aacagttgat ggcggagatt catgctttgc
     4021 ccattccggt tatcgcggct attcatggcg cttgcctggg tggtgggctg gagttggcgc
     4081 tggcgtgcca cggtcgcgtt tgtactgacg atcctaaaac ggtgctcggt ttgcctgaag
     4141 tacaacttgg attgttaccc ggttcaggcg gcacccagcg tttaccgcgt ctgataggcg
     4201 tcagcacaac attagagatg atcctcaccg gaaaacaact tcgggcgaaa caggcattaa
     4261 agctggggct ggtggatgac gttgttccgc actccatttt gctggaagtc gctgttgagc
     4321 tggcgaagaa ggatcgccca tcttcccgcc ctctacctgt acgcgagcgt attctggcgg
     4381 ggccgttagg tcgtgcgctg ctgttcaaaa tggtcggcaa gaaaacagaa cacaaaactc
     4441 aaggcaatta tccggcgaca gaacgcatcc tggaggttgt tgaaacggga ttagcgcagg
     4501 gcaccagcag cggttatgac gccgaagctc gggcgtttgg cgaactggcg atgacgccac
     4561 aatcgcaggc gctgcgtagt atcttttttg ccagtacgga cgtgaagaaa gatcccggta
     4621 gtgatgcacc gcctgcgcca ttaaacagcg tgggaatttt aggtggtggc ttgatgggcg
     4681 gcggtattgc ttatgtcact gcttgtaaag cggggcttcc ggtcagaatt aaagatatca
     4741 acccgcaggg cataaatcat gcgctgaagt acagttggga tcagctggag ggcaaagttc
     4801 gccgtcgtca tctcaaagcc agcgaacgtg acaaacagct ggcattaatc tccggaacga
     4861 cggactatcg cggctttgcc catcgcgatc tgattattga agcggtgttt gaaaatctcg
     4921 aattgaaaca acagatggtg gcggaagttg agcaaaattg cgccgctcat accatctttg
     4981 cttcgaatac gtcatcttta ccgattggtg atatcgccgc tcacgccacg cgacctgagc
     5041 aagttatcgg cctgcatttc ttcagtccgg tggaaaaaat gccgctggtg gagattattc
     5101 ctcatgcggg tacatcagcg caaaccatcg ccactacggt aaaactggcg aaaaaacagg
     5161 gcaaaacgcc cattgtcgtg cgtgacaaag ccgggtttta cgtcaatcgc atcttagcgc
     5221 cttacattaa tgaagctatc cgcatgctga ccaaaggtga acgggtagag cacattgatg
     5281 ccgcgctagt gaaatttggt tttccggtag gtccaatcca acttttggat gaggtaggaa
     5341 tcgacaccgg gactaaaatt attcctgtac tggaagccgc ttatggagaa cgttttagcg
     5401 cgcctgcaaa tgttgtttct tcaattttga acgacgatcg caaaggcaga aaaaatggtc
     5461 ggggtttcta tctttatggt cagaaagggc gtaaaagcaa aaaacaggtc gatcccgcca
     5521 tttacccgct cattggcgca caagggcagg ggcgactctc cgcaccgcag gtttctgaac
     5581 ggtgtgtgat gttgatgctg aatgaagcag tacgttgtgt tgatgagcag gttatccgta
     5641 gcgtgcgtga cggggatatt ggtgcggtat ttggcattgg ttttccgcca tttctcggtg
     5701 gaccgttccg ctatatcgat tctctcggcg cgggcgaagt ggttgcaata atgcaacgac
     5761 tggccacgca gtatggttcc cgttttaccc cttgcgagcg tttggtcgag atgggcgcgc
     5821 gtggggaaag tttttggaaa acaactgcaa ctgacctgca ataagaaggt caaagctata
     5881 tgaatccgcg ctgaatggcg gagtattggt caaaatgtaa acgcatattg actatactta
     5941 cgccattgag gtaaaaaaca gcgtttcatt cggtgaatgg ataaggcaca atgccggcca
     6001 ccgttttctt tctctggttt cagatgaaag aaaatgggcg aatctggtta acaaaagcgg
     6061 tgcaatatgc aagtttttat catgcgtcac ggcgacgcag ccctcgatgc cgccagtgat
     6121 tcggttcgtc ctctgaccac taatggttgt gacgaatctc gcctgatggc gaactggctg
     6181 aaaggtcaaa aagtggaaat cgaacgcgtt ctggtgagcc cgttcctgcg agccgagcaa
     6241 acactggaag aagtagggga ttgtctgaac ctgccttcca gtgcagaagt tctgccggag
     6301 ttaacgccct gcggcgatgt tggtctggtc agtgcctatt tgcaggcgtt gaccaatgaa
     6361 ggtgttgctt cggtactggt gatctctcac ttaccgttag tcgggtatct ggttgccgag
     6421 ttatgtccgg gcgaaacgcc gcctatgttt accacctcgg ccattgccag cgtaacgctt
     6481 gatgaaagcg gaaacggtac attcaactgg cagatgagcc cgtgtaatct gaagatggca
     6541 aaagctatct gatgtgttcc aaattatgcc caatgaggta gattcattgg gcataattgc
     6601 tcatcaggca gcggatatct gtcaacctca ctactatcga agactctcct tatctataaa
     6661 taaaacactt tctacattca ttcggaaatt attcttctgc acgtatcttg attttgccca
     6721 aagttacatg ttgaaatgaa taatgtctgt ttgacactca ttgtcattta ttaatacaga
     6781 taatagagtt gaataatcag gcaggatgta attgaaactt gattaaattc tggctatagt
     6841 gtttatatat tatattgtca aaagtggata aatgccaatc gcattatatg ttcattgttt
     6901 gttttttaag ctgttgatat tcattattga tatactttct attttttcta aatacttatt
     6961 ccgtattttt taaggatgtc cttaagataa tctttcttct gtcaatatat taattaaatc
     7021 tacatttact ctttagtaaa attaaattgc atcaggggtg tggaaacatc actatgcggc
     7081 cccacaccaa cgaatacaat tttctacgac ctgttctttt tggatcgcat gccgtattca
     7141 atggctgggt ataaacattg gctattgact gaatcaatgt attgcaatgt ttatattttt
     7201 aattatttat agtttaagga caaataatga gtaagtttgt taaaacagct attgctgcgg
     7261 caatggtgat gggcgtgttc acctctacgg caacaatcgc tgcgggtaac aacggtactg
     7321 cacgttttta cggcaccatt gaagactcag tgtgttctat cgttccggac gatcacaaac
     7381 tggaagttga tatgggtgat atcggtgccg aaaaactgaa aaataacggc accaccacgc
     7441 cgaaaagttt ccagattcgt ctgcaagatt gcgtatttga tacttaggaa acaatgacca
     7501 ctacctttac tggtaccgtt tcttctgcaa atagcggcaa ttattacacc attttcaata
     7561 ccgataccgg tgcggcattt aacaatgtta gcctggcgat cggtgactct ctgggtacct
     7621 cttacaaaag cggcatgggt attgaccaga aaatagtgaa agacacttct actaataaag
     7681 gcaaagcgaa gcagacactg aactttaaag cctggctggt cggcgcagct gatgcgccag
     7741 atctgggtaa tttcgaagca aataccacct tccagattac ttacctgtaa ggcatacccc
     7801 catagcgaca ctgctatggg ggatttaaat ggattttgac cgaacaagaa taaaaacgga
     7861 tagaaacgtg tatgcctgac cattctcttt ttcgattacg gattcttccg tggtgcattg
     7921 cgctggcaat gtcagggagt tatagcagtg tctgggctga agacgacatt cagtttgatt
     7981 cccgttttct ggaattaaaa ggcgacacaa aaattgatct gaagcgtttt tccagccagg
     8041 gatatgttga gcccggaaaa tacaatttac aggttcaact aaataaacag ccattggcgg
     8101 aagagtacga tatttactgg tatgctggtg aagatgacgc gagcaaaagc tatgcttgtc
     8161 tgacaccgga actggtagcg cagtttggtt taaaagaaga cgtggcgaaa aatctgcaat
     8221 ggagccacga tgctaaatgc ctgaaatccg gtcaactgga aggcatggaa attaaggctg
     8281 atttaagcca gtccgcatta gtcatttcac tgccacaggc ttacctcgaa tatacttatc
     8341 ccgactggga tccgccttca cgttgggatg acggcatctc cgggatcgtc gcggactaca
     8401 gcatcaacgc acaaacccgg cacgaagaaa atggcggtga tgatagtaac gagatcagcg
     8461 gcaacgggac ggtcggggtt aacctggggc cgtggcgtat gcgtgctgac tggcagacta
     8521 actatcaaca tactcgcagt aatgatgacg atgaattcag cggcgatgaa actcaaaaaa
     8581 aatgggagtg gagtcgctac tatgcctggc gggcgttacc atcattaaaa gccaaactgg
     8641 cgctgggcga ggattacctc agatccgata tttttgatgg ttttaactat gttggtggta
     8701 gtgtcagtac tgacgatcaa atgttgcctc ccaatctgcg cggctacgcg ccagacattt
     8761 ccggcgtggc acacaccaca gcaaaagtga ccgtcagcca gatggggcgt gtgatttacg
     8821 aaacgcaggt tccggctgga ccgtttcgta ttcaggatct tggtgattct gtctccggta
     8881 cgttgcatat tcgcattgaa gaacagaacg gccaggtgca ggaatatgac atcagcaccg
     8941 cctcgatgcc atacctcact cgtccaggtc agattcgcta taagatcatg atgggccgtc
     9001 cgcaagagtg gggacaccat gtcgagggtg aatttttttc tggtgctgaa gcttcctggg
     9061 ggatcgctaa cggctggtcg ttatatggcg gcgcactggg agatgaaaac tatcagtctg
     9121 cggcgcttgg cgtcggtcgc gatttgtcta cattcggcgc ggtcgcgttt gatgttactc
     9181 actcgcacac caaactggat aaagacaccg cttatggcaa aggttcgctg gacggtaact
     9241 ccttccgtgt gagttattcc aaagactttg accagctcaa cagccgcgtt acttttgctg
     9301 gatatcgctt ctcggaagag aactttatga ccatgagcga gtatctggat gccagtgaca
     9361 gcggaatggt acgcacgggc aacgacaaag agatgtgcac cgccacttat aaccagaact
     9421 tccgcgatgc gggtgtttcg gtttatctca actatacccg ccatacctac tgggatcgcg
     9481 aggagcagat aaactacaac atcatgctct cgcactattt caatatgggc agtattcgta
     9541 atgtcagcat ctcgatgact ggctaccgtt acgagtatga caaccaggcc gacaaaggca
     9601 tgtacatttc gctcagtatg ccgtggggcg acaacagtac cgttagctat aacggtaact
     9661 atggcagtgg gacggacagc agtcaggtcg gttatttcag ccgtgtcgat gacgcgactc
     9721 actatcagtt gaacgtcggc accagtgaca aacacaccag cgttgacggc tattacagcc
     9781 atgatggttc gctggcgcag gttgacctca gtgcgaacta ccatgaaggg caatacacct
     9841 ctgcgggctt gtcgttacag ggcggcgcaa cgcttactgc ccacggtggc gcacttcacc
     9901 gtacccagaa tatgggcggg acacgcttgt tgattgatgc cgatggcgtt gccgatgttc
     9961 cggtggaagg taacggggct gctgtttata ccaatatgtt tggtaaagcc gtcgtttctg
    10021 acgtcaataa ctattaccgc aatcaggcgt atatcgacct caacagattg cctgaaaacg
    10081 ctgaagcaac ccagtcggtg gtgcaagcca cgctaactga aggtgccatt ggctaccgta
    10141 aatttgctgt cattagcgga caaaaagcga tggcggtgct gcgcctgagc gacggcagcc
    10201 atcctccgtt tggcgcagaa gtaaaaaatg ataacgagca gacagtgggc cttgtcgatg
    10261 atgacggcaa tgtttatctg gctggggtga aacctggcga acacatgagt gtgttctgga
    10321 gtggtgttgc gcattgcgat atcaacctgc cggacccgct gcctgccgat ctgtttaacg
    10381 gcttgttact accatgccag cataaaggca atgtagcacc tatcacttcg ccggcggtca
    10441 aaccggcgat tcaggaacag acacagcggg tgacgccaac ggaacctccg acttcaattt
    10501 cagtaaacca gtaacgtgat taaggaatga tccatgttta atctgactaa cactgcaaaa
    10561 atcgttgtcc cggcactggc gctgctggcg acagcggtca gtttctccag ccacgcttcg
    10621 gtgacgcccg acaggacacg gctggtgttt aacgaaagcg acaagtccat cagcgtcacg
    10681 ctgcgcaaca acgatcccac actgccttat ctggcgcaga gctggataga ggatgcaaag
    10741 ggcaacaaaa tcagctctcc gcttgcggtg cttccgccag tgcagcgcat cgatgcgatg
    10801 atgaacggcc aggtgaaggt gcaggggctg ccggatatca acaaactgcc ggccgaccgc
    10861 gagagcgtgt tctatttcaa cgtgcgcgaa atttcgccga aatcaaataa accgaacaca
    10921 ctgcagattg cgctgcagac gcgtatcaaa ctgttctggc gaccgaaggc gctggagaac
    10981 accagcatga aaagtccgtg gcagcataag gtgacgctca tccgtaacgg ccaggacttc
    11041 accgtcaata acccgacgcc gtactacgtg atcatcagca acgccagcgc taaaaaaggc
    11101 ggcaacccgc cggcgggatt cacaccgctg atgatggagc cgaaaacctc cgcaccgctg
    11161 aatgcgaaga tggacagcgt gccggtgctg acttacatca acgactacgg cgcgcggatg
    11221 ccgctgtact tcaaatgcac cggcaacagc tgccaggtgg atgaagagca gagccgcaaa
    11281 ggctgatgcc gggagggact tatgagtcac aagtttgtag cgggcgcagg gttgctggtg
    11341 ctggccggat ggggcatcag cggtttggct gttgctggca gtgatatcaa acaggtggat
    11401 ctgacgctgc gaatcctagt cgatggaccg ccgccttgct ccgtgaaggg aagcgctgtg
    11461 aaatttggca atgtgataat caacaggatc gatggtacca attaccaaca ggatgcgaaa
    11521 tacaccctca actgcggtaa taaagtcagc gatgacttac ggatgcagct caaaggcaat
    11581 accgccgtga tcaacggaga aacggttctc agcacggata tcgccggcct gggggtgcgg
    11641 atagaaaacg ccgccgacaa ctccctgttt gcagttggtg aaaataactg gacgcctttt
    11701 aatgtcaaca ctcagcctca gctgaaagcg gtgccggtaa aacagagcgg ggtgcaactg
    11761 actccgtcgg agtttaacgc cacgatgacc atggtggtgg attaccaatg aaaaaattcc
    11821 tgctcctttt actgtgcgct ggttgcgggg ctgtgctggc ggcggaagat gacatcacat
    11881 tccacggtac gctgatgtcg ccgcccgcct gtagcatcag cggcgggcaa accatcgaag
    11941 tgcaatttcg cgatctcatt atcgacagca ttgatggcaa ttatggtcgt cagaaagtgg
    12001 actacgaact gagctgcgac tcggatgtcc gcgatcccga gtggaatatg acactctcct
    12061 ggacggggac tgccacctcc tacaacgact ctgctattga gacggatgta ccgggcttcg
    12121 gaattgagct tcagcatgac ggtcagcgtt ttaagctcaa cgagccgctt tccattaacg
    12181 ccaccgattt tagccagaag ccaaagctgg aggcggtacc ggtcaaagcg gctgatgcgg
    12241 tgctgacgga cacgaccttt tctgcttacg caaccttacg ggtggattac caatgaaaac
    12301 agcacacatt tattcacccg gttatgcgct gttagcaggc ctgctgctga ccgccagcac
    12361 aggagcacag gcagtcgaca acaacctgca tttttacggc aacctgctga gtaaatcctg
    12421 cacgctggtg gtggatggtg ccaacctggc agaaatccat tttcccaccg tcagcaaccg
    12481 ggatttgatg gtatctgggc agtccgcgca tctgccggtt gtgtttaagc tgaaagactg
    12541 caaagggccg gcgggataca acgtcaaagt cacgctgagc ggcaccgaag acagcggtca
    12601 gccgggtttt ctggcagtcg atgacacctc caccgcgcag ggcgtgggga tagggatgga
    12661 aacgctcgac ggcaagcggg tggatattaa caacaccacc ggggcgacct ttgcgcttac
    12721 caacggcaac aatgatatta atttccgggc ctggatctag gcgaaaagcg gtcgtgatgt
    12781 aaccatcggt gatttcaccg ccagcctgac agcaactttt gagtatattt aaaatgaaaa
    12841 tccttcgtca tgttttatgt cttttattgc tgttaatgtt caatacatgc ggccaggcgg
    12901 cgacgaaagt tggtgagtta tatgtgccag ctggtgccag ttcacctgcg ac
//
LOCUS       DADMJB010000120        12914 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.120, whole genome shotgun sequence.
ACCESSION   DADMJB010000120 DADMJB010000000
VERSION     DADMJB010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12914)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12914)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12914
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.120"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..880)
                     /gene="rarD"
                     /locus_tag="JN078_002967"
     CDS             complement(<1..880)
                     /gene="rarD"
                     /locus_tag="JN078_002967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HAY9042099.1"
                     /translation="MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVI
                     WSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEA
                     SLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFS
                     FAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMLLNLLLIA
                     AGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFI
                     WVALAIFVMDAIYTQRR"
     gene            complement(932..1399)
                     /locus_tag="JN078_002968"
     CDS             complement(932..1399)
                     /locus_tag="JN078_002968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001350877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HAY9042100.1"
                     /translation="MSAVLTAEQALKLVGEMFVYHMPFNRALGMELERYEKEFAQLAF
                     KNQPMMVGNWAQSILHGGVIASALDVAAGLVCVGSTLTRHETISEDELRQRLSRMGTI
                     DLRVDYLRPGRGERFTATSSLLRAGNKVAVARVELHNEEQLYIASATATYMVG"
     gene            1564..2433
                     /gene="pldA"
                     /locus_tag="JN078_002969"
     CDS             1564..2433
                     /gene="pldA"
                     /locus_tag="JN078_002969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HAY9042101.1"
                     /translation="MRTLQGWLLPVFMLPMAVYAQEATVKEVHDAPAVRGSIIANMLQ
                     EHDNPFTLYPYDTNYLIYTQTSDLNKEAIASYDWAENARKDEVKFQLSLAFPLWRGIL
                     GPNSVLGASYTQKSWWQLSNSEESSPFRETNYEPQLFLGFATDYRFAGWTLRDVEMGY
                     NHDSNGRSDPTSRSWNRLYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLK
                     IGYHLGDAVLSAKGQYNWNTGYGGAELGLSYPITKHVRLYTQVYSGYGESLIDYNFNQ
                     TRVGVGVMLNDLF"
     gene            2566..4395
                     /gene="recQ"
                     /locus_tag="JN078_002970"
     CDS             2566..4395
                     /gene="recQ"
                     /locus_tag="JN078_002970"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026263.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecQ"
                     /protein_id="HAY9042102.1"
                     /translation="MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCL
                     VVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTRE
                     QQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
                     EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLM
                     EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRA
                     DVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPA
                     EAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEG
                     RQEPCGNCDICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDY
                     GHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNIAQHSALQLTEAARPVLRGESSL
                     QLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEM
                     AEQMPITASEMLSVNGVGMCKLERFGKPFMALIRAHVDGDDEE"
     gene            4459..5079
                     /gene="rhtC"
                     /locus_tag="JN078_002971"
     CDS             4459..5079
                     /gene="rhtC"
                     /locus_tag="JN078_002971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine export protein RhtC"
                     /protein_id="HAY9042103.1"
                     /translation="MLMLFLTVAMVHIVALMSPGPDFFFVSQTAVSRSRKEAMMGVLG
                     ITCGVMVWAGIALLGLHLIIEKMAWLHTLIMVGGGLYLCWMGYQMLRGALKKEAVSAP
                     APQIELAKSGRSFLKGLLTNLANPKAIIYFGSVFSLFVGDNVGTTARWGIFALIIVET
                     LAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIISR"
     gene            complement(5141..5761)
                     /gene="rhtB"
                     /locus_tag="JN078_002972"
     CDS             complement(5141..5761)
                     /gene="rhtB"
                     /locus_tag="JN078_002972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine/homoserine lactone efflux protein"
                     /protein_id="HAY9042104.1"
                     /translation="MTLEWWFAYLLTSIILSLSPGSGAINTMTTSLNHGYRGAVASIA
                     GLQTGLAIHIVLVGVGLGTLFSRSVIAFEVLKWAGAAYLIWLGIQQWRAAGAIDLKSL
                     ASTQSRRHLFQRAVFVNLTNPKSIVFLAALFPQFIMPQQPQLMQYIVLGVTTIVVDII
                     VMIGYATLAQRIALWIKGPKQMKALNKIFGSLFMLVGALLASARHA"
     gene            5872..6894
                     /gene="pldB"
                     /locus_tag="JN078_002973"
     CDS             5872..6894
                     /gene="pldB"
                     /locus_tag="JN078_002973"
                     /EC_number="3.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipase L2"
                     /protein_id="HAY9042105.1"
                     /translation="MFQQQKDWETRENAFAAFTMGPLTDFWRQRDEAEFTGVDDIPVR
                     FVRFRAQHHDRVVVICPGRIESYVKYAELAYDLFHLGFDVLIIDHRGQGRSGRLLADP
                     HLGHVNRFNDYVDDLAAFWQQEVQPGPWRKRYILAHSMGGAISTLFLQRHPGVCDAIA
                     LTAPMFGIVIRMPSFMARQILNWAEAHPRFRDGYAIGTGRWRALPFAINVLTHSRQRY
                     RRNLRFYADDPTIRVGGPTYHWVRESILAGEQVLAGAGDDATPTLLLQAEEERVVDNR
                     MHDRFCELRTAAGHPVEGGRPLVIKGAYHEILFEKDAMRSVALHAIVDFFNRHNSPSG
                     NRSTEV"
     gene            6902..7702
                     /gene="yigL"
                     /locus_tag="JN078_002974"
     CDS             6902..7702
                     /gene="yigL"
                     /locus_tag="JN078_002974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar/pyridoxal phosphate phosphatase YigL"
                     /protein_id="HAY9042106.1"
                     /translation="MYQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGINFVFATGR
                     HHVDVGQIRDNLEIKSYMITSNGARVHDLDGNLIFAHNLDRDIASDLFGVVNDNPDII
                     TNVYRDDEWFMNRHRPEEMRFFKEAVFKYALYEPGLLEPEGVSKVFFTCDSHEQLLPL
                     EQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMND
                     AEMLSMAGKGCIMGSAHQRLKDLHPELEVIGTNADDAVPHYLRKLYLS"
     gene            7778..8677
                     /gene="bioP"
                     /locus_tag="JN078_002975"
     CDS             7778..8677
                     /gene="bioP"
                     /locus_tag="JN078_002975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter"
                     /protein_id="HAY9042107.1"
                     /translation="MALLIITTILWAFSFSFYGEYLAGHVDSYFAVLVRVGLAALVFL
                     PFLRTRGNSLKTVGLYMLVGAMQLGVMYMLSFRAYLYLTVSELLLFTVLTPLYITLIY
                     DIMNKRRLRWGYAFSALLAVIGAGIIRYDQVTDHFWTGLLLVQLSNITFAIGMVGYKR
                     LMETRPMPQHNAFAWFYLGAFLVAVIAWFLLGNAQKMPQTTLQWGILVFLGVVASGIG
                     YFMWNYGATQVDAGTLGIMNNMHVPAGLLVNLAIWHQQPHWPTLITGALVILASLWVH
                     RKWVAPRSSQTADDRRRDCALSE"
     gene            complement(8565..9518)
                     /gene="metR"
                     /locus_tag="JN078_002976"
     CDS             complement(8565..9518)
                     /gene="metR"
                     /locus_tag="JN078_002976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MetR"
                     /protein_id="HAY9042108.1"
                     /translation="MIEVKHLKTLQALRNCGSLAAAAATLHQTQSALSHQFSDLEQRL
                     GFRLFVRKSQPLRFTPQGEILLQLANQVLPQISQALQACNEPQQTRLRIAIECHSCIQ
                     WLTPALENFHKNWPQVEMDFKSGVTFDPQPALQQGELDLVMTSDILPRSGLHYSPMFD
                     YEVRLVLAPDHPLAAKTRITPEDLASETLLIYPVQRSRLDVWRHFLQPAGVSPSLKSV
                     DNTLLLIQMVAARMGIAALPHWVVESFERQGLVVTKTLGEGLWSRLYAAVRDGEQRQP
                     VTEAFIRSARNHACDHLPFVKSAERPIYDAPTVRPGSPARL"
     gene            9754..12015
                     /gene="metE"
                     /locus_tag="JN078_002977"
     CDS             9754..12015
                     /gene="metE"
                     /locus_tag="JN078_002977"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HAY9042109.1"
                     /translation="MTILNHTLGFPRVGLRRELKKAQESYWAGNSTREELLAVGRELR
                     ARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNKDGSVDIDTLFRIGRG
                     RAPTGEPAAAAEMTKWFNTNYHYMVPEFVKGQQFKLTWTQLLEEVDEALALGHNVKPV
                     LLGPVTWLWLGKVKGEQFDRLSLLNDILPVYQQVLAELEKRGIEWVQIDEPALVLELP
                     QAWLDAYKPAYDALQGQVKLLLTTYFEGVTPNLDTITALPVQGLHVDLVHGKDGVAEL
                     HKRLPSDWLLSAGLINGRNVWRADLTEKYAQIKDIVGKRDLWVASSCSLLHSPIDLSV
                     ETRLDAEVKSWFAFALQKCHELALLRDALNSGDTAALAEWSAPIQARRHSTRVHNPAV
                     EKRLAAITAQDSQRANVYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRTLRLDFKKG
                     NLDANNYRTGIAEHIKQAIVEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGW
                     VQSYGSRCVKPPIVIGDVSRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPRE
                     DVSRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLQWGVEA
                     FRINAAVAKDDTQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESFEEFDY
                     PNEIGPGVYDIHSPNVPSVEWIEALLKKAAKRIPAERLWVNPDCGLKTRGWPETRAAL
                     ANMVQAAQNLRRG"
     gene            complement(12300..12545)
                     /locus_tag="JN078_002978"
     CDS             complement(12300..12545)
                     /locus_tag="JN078_002978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HAY9042110.1"
                     /translation="MITETEINVLKVMAEKDINWNWMNLDRTLSIRQIPGFGNVVNIV
                     NKLANEGLVIIEDSGHKSMPHYHVTEKGYNFVKSENK"
     gene            complement(12535..>12914)
                     /locus_tag="JN078_002979"
     CDS             complement(12535..>12914)
                     /locus_tag="JN078_002979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001355386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042111.1"
                     /translation="FNPDLAGGPIENLTTDGVTINREGIAIVEKHIARFGHDPINEVM
                     INRLKDIEKGKIPPEQVDLNFYTHECREYQRYCNLGWETGQPDGDAGYALWNHTHTAT
                     LEDYKLKGELNDLYHQDALDYDN"
BASE COUNT         3052 a         3261 c         3441 g         3160 t
ORIGIN      
        1 ttctacgctg cgtataaatc gcatccatca caaaaattgc cagcgccacc caaataaagg
       61 cgaaggtcac catcttatcg gcacccggtt tttcaccata aaacgtcact gccaacagga
      121 acatcagcgt cgggccaata tactggaaga agcctaacgt ggagagacgc aggcgtgtag
      181 cagctgcggt aaaacacaac agcggtacgg tggtgacaat accggcggcg atcagcagca
      241 aattcagcaa catcgggttt tgccccatat ggctggttga gctgtcggca atagcaaaca
      301 gataaatcgc cgccacgggc agcagccaca tggtttcgat taacatgccg gtttgcgctt
      361 caacggcaat tttcttgcgt accagtccgt agaaggcaaa actaaacgcc agccccagcg
      421 cgatgattgg cagcgaacca aaagtccaca actgaaccaa cacgccacat atcgccagaa
      481 tcaccgccag ccattgcatc cggcggaatc gctcgccgag gaaaatcatc cccagcacaa
      541 tgttcaccag cgggttaata aagtaaccaa ggctcgcttc cagcatatgg tgattgttca
      601 ccgcccagat aaacagtagc cagttgccac caatcagcac ggcagagact gccagcataa
      661 aaattttctg tggcgtctga atcagcgttt ttaaatagga ccactggcgg caaatgctca
      721 tcagcaccac cataaagaaa aacgaccaga tcacgcgatg cgtcaggatc tcatcggcgg
      781 gcacgtagta aatcagcttg aagtatgctg gcgcaatacc ccaaataaaa taagcggcaa
      841 gagcgagtaa tacgccctgc cgcgtttgtt ttgcatccat cgggaatact catttttaat
      901 tggtaacagc agtttacctg cttttatgtc ttcaacctac catataggtg gcggtggcac
      961 tggcaatata aagctgttct tcattgtgta attcaacgcg ggcgacggcg actttattgc
     1021 ctgcacgcaa caggctactg gtagcagtaa aacgctcgcc cctgcctggg cgcagataat
     1081 caacgcgaag atcaatggtc cccatccgcg atagccgctg gcgtagttca tcttcactga
     1141 tggtttcgtg gcgggttaag gtacttccca cgcacaccag accggcggcg acatccagcg
     1201 ccgacgcaat gactccgccg tgcaaaatgc tttgcgccca gttacccacc atcatcggct
     1261 gatttttaaa ggccagctgt gcgaactctt tttcgtaacg ctccagctcc atccctaacg
     1321 cgcggttaaa tggcatgtga taaacaaaca tctcacccac taatttcagg gcttgttcag
     1381 cggtcagtac ggcagacata tcatccttac acttcattgg ttaatgaaat gttgatttta
     1441 tgcttctttg ttgttggttt ctactttagg aagggataac taacggcaat ggagttaagt
     1501 atgtaaaata gcccgcagaa aaacattcac cttatcaata attcgttacg gagaacacga
     1561 ccgatgcgga ctctgcaggg ctggttgttg ccggtgttta tgttgcctat ggcagtatat
     1621 gcacaagagg caacggtgaa agaggtgcat gacgcgccag cggtgcgtgg cagtattatc
     1681 gccaatatgc tgcaggagca tgacaatccg ttcacgctct atccttatga caccaactac
     1741 ctcatctaca cccaaaccag cgatctgaac aaagaagcga ttgccagtta cgactgggcg
     1801 gaaaatgcgc gtaaggatga agtaaagttt cagttgagcc tggcatttcc actgtggcgt
     1861 gggattttag gcccgaactc ggtgttgggt gcgtcttata cgcaaaaatc ctggtggcaa
     1921 ctgtccaata gcgaagagtc ttcaccgttt cgtgaaacca actacgaacc gcaattgttc
     1981 ctcggttttg ccaccgatta ccgttttgca ggttggacgc tgcgcgatgt ggagatgggg
     2041 tataaccacg actctaacgg gcgttccgac ccgacctccc gcagctggaa ccgcctttat
     2101 actcgcctga tggcagaaaa cggtaactgg ctggtagaag tgaagccgtg gtatgtggtg
     2161 ggtaatactg acgataaccc ggatatcacc aaatatatgg gttactacca gcttaaaatc
     2221 ggctatcacc tcggtgatgc ggtgttgagt gcgaaaggac agtacaactg gaataccggt
     2281 tacggcggcg cggagttagg cttaagttac ccgatcacca aacatgtgcg cctttatact
     2341 caggtttaca gcggctatgg cgaatcgctc atcgactata acttcaacca gacccgtgtc
     2401 ggtgtaggag ttatgctaaa cgacttgttt tgatgaacgg ttgagtggtt ggcaaatctg
     2461 gaacccagca tccaggatta ccctctcaga gactaaaagc attgcagttt ctcgcgcagg
     2521 cgctgaaaat agcgcctgtt tttatttcag gcaatcgggg tgaatgtggc gcaggcggaa
     2581 gtgttgaatc tggagtccgg agctaaacag gttttacaag aaacctttgg ctaccaacag
     2641 tttcgccccg gccaggaaga aattatcgac actgtgcttt ccggtcgcga ttgcctggtc
     2701 gtcatgccca ccggtggcgg aaaatccctt tgctatcaaa ttcctgcctt attgctaaac
     2761 ggccttaccg tggttgtttc accgctgatt tcgttgatga aagatcaggt ggatcaactg
     2821 caagccaacg gcgtggcggc ggcgtgcctt aactcgacgc aaacccgcga gcagcaactt
     2881 gaagtgatga caggctgccg caccgggcaa attcgtctgc tttatatcgc cccggaacgc
     2941 ctgatgctgg ataactttct tgagcatctg gcgcactgga atccggtgtt attagccgtt
     3001 gatgaagcgc actgtatctc ccaatggggc cacgatttcc gcccggaata tgccgcgctt
     3061 ggtcagttac gccagcgttt cccgaccctg ccgtttatgg cgctgactgc cacagccgac
     3121 gacaccacgc gccaggatat cgtgcgcttg ctggggctga acgatccgct gattcaaatc
     3181 agcagttttg accgtccgaa tattcgctac atgctgatgg agaagttcaa accgctcgat
     3241 cagttgatgc gctacgtgca ggaacagcgc ggtaagtcag gcattatcta ctgcaacagc
     3301 cgcgcgaaag tagaagacac cgctgcgcgc ctgcaaagca agggaattag cgcggcggcc
     3361 tatcatgctg ggctggaaaa taatgttcgc gccgacgtgc aggaaaaatt tcagcgcgat
     3421 gacctgcaaa ttgtggtggc gacggtggcg ttcggcatgg gcatcaataa accaaacgtt
     3481 cgcttcgtgg tccactttga tattccgcgc aatatcgaat cctattatca ggaaaccggt
     3541 cgcgccgggc gtgatggcct gcccgcggaa gcgatgctgt tttacgatcc ggccgatatg
     3601 gcgtggctgc gccgttgcct ggaagagaag ccgcaggggc agttacagga tatcgaacgt
     3661 cataaactca atgcgatggg cgcttttgcc gaagcgcaaa cttgccgtcg tctggtattg
     3721 ctgaactatt ttggcgaagg gcggcaagag ccgtgcggga actgcgatat ctgcctcgat
     3781 ccgccgaaac agtacgacgg ttcaaccgat gctcagattg ccctttccac cattggtcgt
     3841 gtgaatcagc ggtttgggat gggttatgtg gtggaagtga ttcgtggtgc taataaccag
     3901 cgtatccgcg actatggtca tgacaaactg aaagtctatg gcatgggccg tgataaaagc
     3961 catgaacatt gggtgagcgt gatccgccag ctgattcacc tcggcctggt gacgcaaaat
     4021 attgcccagc attctgccct acaactgaca gaggccgcgc gcccggtgct gcgcggcgaa
     4081 tcctctttgc aacttgccgt gccgcgtatc gtggcgctca aaccgaaagc gatgcagaaa
     4141 tcgttcggcg gcaactatga tcgcaaactg ttcgccaaat tacgcaaact gcgtaaatcg
     4201 attgccgatg aaagtaatgt cccgccgtac gtggtgttta acgacgcaac cttgattgag
     4261 atggctgaac agatgccgat caccgccagc gaaatgctca gcgttaacgg cgttgggatg
     4321 tgcaagctgg aacgctttgg taaaccgttt atggcgctga ttcgtgcgca tgtcgatggc
     4381 gacgacgaag agtagtcagc agcataaaaa agtgccagga tgaagactcc gtaaacgttt
     4441 cccccgcgag tcaaatgtat gttgatgtta tttctcaccg tcgccatggt gcacattgtg
     4501 gcgcttatga gccccggtcc cgatttcttt tttgtctctc agaccgctgt cagtcgttcc
     4561 cgtaaagaag cgatgatggg cgtgctgggt attacctgcg gcgttatggt ttgggcaggg
     4621 attgcgttgc ttggcctgca tttgattatc gaaaaaatgg cctggctgca tacgctgatt
     4681 atggttggcg gtggcctgta tctctgctgg atgggttacc agatgctacg cggtgcactg
     4741 aaaaaagagg ctgtatctgc gcctgcacca cagattgagc tggcgaaaag cgggcgcagt
     4801 ttcctgaaag gtttactgac caatctcgct aatccgaaag cgattatcta ctttggctcg
     4861 gtgttctcat tgtttgtcgg tgataacgtt ggcactaccg cgcgctgggg catttttgcg
     4921 ctgatcattg tcgaaacact ggcgtggttt accgtcgttg ccagcctgtt tgccctgccg
     4981 caaatgcgcc gtggttatca acgtctggcg aagtggattg atggttttgc cggggcgtta
     5041 tttgccggat ttggcattca tttgattatt tcgcggtgat gccagacgcg tcttcagagt
     5101 aagtcggata aggcgtttac gccgcatccg acattatttt tcacgcatgc ctcgccgatg
     5161 ctaacagcgc tcccaccagc ataaacaacg agccgaaaat cttattcagc gccttcatct
     5221 gctttggtcc tttaatccat agagcaatcc gttgagcaag ggtggcgtaa ccgatcatca
     5281 caataatatc gactacaata gtggtgacgc cgagcacgat atactgcatc agttgcggct
     5341 gctgtggcat gatgaattgc ggaaatagcg ccgccagaaa cacaatactt ttgggattgg
     5401 tgagattcac aaaaactgcg cgctggaaca aatgtcgacg cgattgagta gaggccagcg
     5461 atttaaggtc aattgcacca gcggcgcgcc actgctggat tcccagccaa atcaagtaag
     5521 ccgcgcctgc ccacttcaac acttcaaacg caatcactga gcgggaaaat agcgtcccca
     5581 aacccacgcc aaccagcaca atatgaatcg ccagtccggt ctgaagccca gcaatagacg
     5641 ccaccgcgcc gcgataaccg tggttgagcg aggtggtcat agtgttgatt gcaccagagc
     5701 ctggcgacag gcttaaaatg atcgatgtca gcaggtaggc aaaccaccat tctaaggtca
     5761 tgatgaactc ccggtgtgtc tatttttgtg ccacaatacg ctactgtcgc agcgttgtgt
     5821 caggcacgct aaaaaaaacg attttacgtg gtttaagagg cagattaccc gatgtttcag
     5881 cagcaaaaag actgggaaac aagagaaaac gcgtttgctg cttttaccat gggaccgctg
     5941 actgatttct ggcgtcagcg tgatgaagca gagtttactg gtgtggatga cattccggtg
     6001 cgctttgtcc gttttcgcgc acagcaccat gaccgggtgg tagtcatctg cccggggcgt
     6061 attgagagct acgtaaaata tgcggaactg gcctatgacc tgttccattt ggggtttgat
     6121 gtcttaatca tcgaccatcg cgggcaggga cgttccggtc gcctgttagc cgatccgcat
     6181 ctcgggcatg ttaatcgctt taatgattat gttgatgatc tggcggcatt ctggcagcag
     6241 gaggtccagc ccggtccgtg gcgtaaacgc tatatactgg cacattcgat gggcggtgcg
     6301 atctccacat tatttctgca acgccatcca ggtgtatgtg acgccattgc gctaactgcg
     6361 ccaatgtttg ggatcgtgat tcgtatgccg tcatttatgg cacggcagat cctcaactgg
     6421 gccgaagcgc atccacgttt ccgtgatggc tatgcaatag gcaccgggcg ctggcgcgcg
     6481 ttgccgtttg ctatcaacgt actgacccac agcagacagc gatatcgacg taacttacgc
     6541 ttctatgctg atgacccaac gattcgcgtc ggtgggccga cctaccattg ggtacgcgaa
     6601 agtattctgg ctggcgaaca ggtgttagcc ggtgcgggtg atgacgccac gccaacgctt
     6661 ctcttgcagg ctgaagagga acgcgtggtg gataaccgca tgcatgaccg tttttgtgaa
     6721 ctccgcaccg ccgcgggcca tcctgtcgaa ggaggacggc cgttggtaat taaaggtgct
     6781 taccatgaga tcctttttga aaaggacgca atgcgctcag tcgcgctcca cgccatcgtt
     6841 gattttttca acaggcataa ctcacccagc ggaaaccgct ctacagaggt ttaaatttct
     6901 tatgtaccag gttgttgcgt ctgatttaga tggcacgtta ctttctcccg accatacgtt
     6961 atccccttac gccaaagaaa ctctgaagct gctcaccgcg cgcggcatca actttgtgtt
     7021 tgcgaccggt cgtcaccacg ttgatgtggg gcaaattcgc gataatctgg agattaagtc
     7081 ttacatgatt acctccaatg gtgcgcgcgt tcacgatctg gatggtaatc tgatttttgc
     7141 tcataacctg gatcgcgaca ttgccagcga tctgtttggc gtagtcaacg acaatccgga
     7201 catcattact aacgtttatc gcgacgacga atggtttatg aatcgccatc gcccggaaga
     7261 gatgcgcttt tttaaagaag cggtgttcaa atatgcgctg tatgagcctg gattactgga
     7321 gccggaaggc gtcagcaaag tgttcttcac ctgcgattcc catgaacaac tgctgccgct
     7381 ggagcaggcg attaacgctc gttggggcga tcgcgtcaac gtcagtttct ctaccttaac
     7441 ctgtctggaa gtgatggcgg gcggcgtttc aaaaggccat gcgctggaag cggtggcgaa
     7501 gaaactgggc tacagcctga aggattgtat tgcgtttggt gacgggatga acgacgccga
     7561 aatgctgtcg atggcgggga aaggctgcat tatgggcagt gcgcaccagc gtctgaaaga
     7621 ccttcatccc gagctggaag tgattggtac taatgccgac gacgcggtgc cgcattatct
     7681 gcgtaaactc tatttatcgt aatcgttctt tatttggtca gttgtcaacc tgatacttcg
     7741 ctacaatgga tactcgttaa tcaaagagtt ttccattgtg gcgctactta tcatcaccac
     7801 gattctgtgg gccttctcct ttagctttta tggcgagtac cttgcggggc acgtcgatag
     7861 ctattttgcg gtgctggtgc gcgttggcct ggcggcactc gtttttctgc cgtttctgcg
     7921 tacccgtggc aatagcctga aaacagtcgg cctgtatatg ctggtgggcg cgatgcagct
     7981 cggcgtgatg tatatgctga gtttccgcgc ttatctctat ctgacggttt ccgaactgct
     8041 gctgttcacc gtactgacgc cgctctacat cacgctgatt tatgacatca tgaataagcg
     8101 ccgtctgcgc tggggatatg cttttagtgc cttgttggcg gtgattggtg ccgggattat
     8161 tcgctatgat caggtcaccg accatttctg gactggcttg ttgctggtgc aactctccaa
     8221 tatcactttt gccatcggca tggtgggtta caaacgcctg atggaaactc gcccgatgcc
     8281 gcagcataac gcctttgcgt ggttctatct tggcgcgttc ctggtggcgg taattgcatg
     8341 gttcttgctg ggaaatgcgc agaaaatgcc gcaaaccacg ttgcaatggg gcattctggt
     8401 gtttcttggc gtggtggctt ccgggattgg ctactttatg tggaactacg gcgcgacgca
     8461 ggtggacgcc ggaacgctgg gaattatgaa taatatgcac gttccggcag ggctgctggt
     8521 aaacctggct atctggcacc aacagccgca ctggccaacg ttgattacag gcgcgctggt
     8581 gatcctggcc tcactgtggg tgcatcgtaa atgggtcgct ccgcgctctt cacaaacggc
     8641 agatgatcgc aggcgtgatt gcgcgctgag cgaataaacg cttccgtaac tggctgacgc
     8701 tgctcgccat cgcgcacggc ggcgtacagt cggctccaca agccttcgcc cagggttttg
     8761 gtcaccacca gaccctggcg ctcaaaactc tctactaccc aatgcggtag cgcggcaata
     8821 cccatccgcg cggcaaccat ctgaatcaac aataaggtgt tatcgacgct tttcagtgac
     8881 ggactgacgc ctgccggctg aagaaaatgc cgccagacat ccagtcgact acgctgcacc
     8941 ggataaatta atagcgtctc gctggcgaga tcttccggtg taatacgcgt ttttgccgcc
     9001 agtggatggt caggtgctaa caccagacgc acttcatagt cgaacatcgg cgaataatgc
     9061 agaccactgc gcggcagaat atcggacgtc attaccagat ccagctctcc ctgttgcaag
     9121 gcgggctgcg ggtcaaatgt cacgcccgat ttaaagtcca tctcgacctg cggccagttc
     9181 ttatggaaat tttctaacgc gggcgtcagc cactgtatac agctatggca ctcaatggca
     9241 atgcgcagac gcgtctgctg cggttcattg caggcttgca gtgcctggct aatttgtggc
     9301 agcacctggt ttgccagttg caacaggatt tctccctgcg gtgtaaagcg aagcggctgg
     9361 cttttacgca caaatagccg gaagccaagg cgttgttcca gatcgctaaa ctggtgagac
     9421 agggcggatt gcgtttgatg caacgtcgcc gcagcggctg cgagtgagcc gcagttccgc
     9481 aacgcttgta gcgttttcag atgttttact tcgatcatga aagtccttca cttcggcatg
     9541 aataatttgc gcttgaggaa tatacagtaa ccgccaatta tggatgtgta aacatctgga
     9601 cggctaaaat ccttcgtctt ttaaatttat ggtgcgttgg ctgcgtttct ccaccccggt
     9661 cacttacttc agtaagctcc cggggatgaa taaacttgcc gccttcccta aattcaaaat
     9721 ccataggatt tacatataat tagaggaaga aaaatgacaa tattgaatca caccctcggt
     9781 ttccctcgcg ttggcctgcg tcgcgagctg aaaaaagcgc aagagagtta ttgggcaggg
     9841 aactccacgc gtgaagaact gctggcggta gggcgtgaat tgcgtgctcg tcactgggat
     9901 caacaaaagc aagcgggtat cgacctgctg ccggtgggcg attttgcctg gtacgatcat
     9961 gtactgacca ccagtctgct gctgggtaac gttccggcgc gtcatcagaa caaagatggt
    10021 tcggtagata ttgacaccct gttccgtatt ggtcgtggac gtgcgccgac tggcgaacct
    10081 gcggcggcag cggaaatgac caaatggttt aacaccaact atcactacat ggtgccggaa
    10141 ttcgttaaag gccaacagtt caaactgacc tggacgcagc tgctggagga agtggacgag
    10201 gcgctggcgc tgggccacaa cgttaagcct gtgctgctgg ggccggttac ctggctgtgg
    10261 ctggggaaag tgaaaggtga acagtttgac cgcctgagcc tgctgaacga cattctgccg
    10321 gtttatcagc aagtgctggc agaactggag aaacgcggca tcgagtgggt acagattgat
    10381 gaacccgcgc tggtactgga actaccacag gcgtggctgg acgcatacaa acccgcttac
    10441 gacgcgctcc agggacaggt gaaactgctg ctgactacct attttgaagg cgttacgcca
    10501 aatctcgaca cgattactgc gctgcctgtt cagggactgc atgtggacct tgtacatggt
    10561 aaagatggcg ttgctgaact gcacaagcgc ctgccttctg actggctgct gtctgcggga
    10621 ctgatcaatg gtcgtaacgt ctggcgcgcc gatcttactg agaaatatgc gcaaattaag
    10681 gacattgtcg gcaaacgtga tttgtgggtg gcatcttcct gctcgttgct gcacagcccc
    10741 atcgacctga gcgtggaaac gcgtcttgat gcagaagtga aaagctggtt tgccttcgcc
    10801 ttacaaaaat gccatgaact ggcactgctg cgcgatgcgc tgaacagtgg tgacacggca
    10861 gctctggcag agtggagcgc cccaattcag gcgcgtcgtc actctactcg tgtacataat
    10921 ccggcggtag aaaagcgtct ggcggcgatc accgcccagg acagccagcg tgcgaatgtc
    10981 tatgaagtgc gtgctgaagc ccagcgtgcg cgttttaaac tgccagcgtg gccgaccacc
    11041 acgattggtt ccttcccgca aaccacggaa attcgtaccc tgcgtctgga tttcaaaaag
    11101 ggcaatctcg acgccaacaa ctaccgcacg ggcattgcgg aacatatcaa gcaggccatt
    11161 gttgagcagg aacgtttggg actggatgtg ctggtacatg gcgaggccga gcgtaatgac
    11221 atggtggaat actttggcga gcacctcgac ggatttgtct ttacgcaaaa cggttgggta
    11281 cagagctacg gttcccgctg cgtgaagcca ccgattgtta ttggtgacgt tagtcgcccg
    11341 gcaccgatta ccgtggagtg ggcgaagtat gcgcaatctc tgactgataa accggtgaaa
    11401 gggatgctga ctggcccggt gaccattctc tgctggtcgt tcccgcgtga agatgtcagc
    11461 cgtgaaacca tcgccaaaca aattgcgctg gcgctgcgtg atgaagtggc ggacctggaa
    11521 gccgcaggaa ttggcatcat ccagattgat gaaccggcgc tgcgcgaagg tttaccgctg
    11581 cgtcgtagcg actgggatgc atatctccag tggggcgtgg aggccttccg tatcaacgcc
    11641 gccgtggcga aagatgacac acaaatccac actcacatgt gttattgcga gttcaacgac
    11701 atcatggatt ccattgcggc actggatgca gacgtcatca ccatcgaaac ctcgcgttcc
    11761 gacatggagt tgctggagtc gtttgaagag tttgattatc cgaatgaaat cggtccaggc
    11821 gtctatgaca ttcactcgcc aaacgtaccg agcgtagaat ggattgaagc cttgctgaag
    11881 aaagcggcaa aacgcattcc ggcagagcgc ctgtgggtca acccggactg tggcctgaaa
    11941 acgcgcggct ggccagaaac ccgcgcggca ctggcgaaca tggtgcaggc ggcgcagaat
    12001 ttgcgtcggg gatgatgaat attaacgagt cactgtaaat tgcagtacga tgaaagaggc
    12061 aaaactgcct gataccaggc ctacataatt tatgcaattt attgaatttt tgagttttgt
    12121 tggccggaca aggcgttcac gccgcatccg gcatgaacaa cgcgcacttt gccaataatc
    12181 tgatggcttc catcaccgga agccattttg ctatctgcgc ccgttcagat acagaaataa
    12241 ccgaatcatt tttacgcaaa atataatcct gagcgatttg ttcagtaatc aacgctacgt
    12301 tatttattct cacttttcac gaaattgtat cccttttcag taacgtggta gtgaggcata
    12361 gacttatgtc cgctatcctc aataataacc aaaccctcgt tagctaattt gttaacaatg
    12421 ttaacaacat taccgaatcc tggaatttgc cttatggata gtgtgcgatc gagattcatc
    12481 cagttccagt ttatatcttt ctcagccata actttcagta cgttaatttc agtttcagtt
    12541 atcatagtca agtgcatcct ggtggtataa gtcattaagt tctcccttaa gtttataatc
    12601 ttctagagta gcagtatgcg tatgattcca gagtgcatag cctgcgtcac catcaggttg
    12661 tcctgtttcc caaccaagat tacagtaacg ctgatattcc cgacactcat gagtatagaa
    12721 gttaagatct acttgttctg gggggatttt tcctttctca atgtctttca gtctattgat
    12781 catcacttca tttatagggt catgaccaaa tctggctatg tgtttttcaa caatagcgat
    12841 accttccctg ttgattgtta cgccatctgt cgtcagattt tctattggac caccggcaag
    12901 gtcgggatta aatg
//
LOCUS       DADMJB010000121        12909 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.121, whole genome shotgun sequence.
ACCESSION   DADMJB010000121 DADMJB010000000
VERSION     DADMJB010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12909)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12909)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12909
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.121"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            559..1567
                     /locus_tag="JN078_002980"
                     /pseudo
     CDS             559..1567
                     /locus_tag="JN078_002980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311546.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha amylase"
     gene            1903..2880
                     /gene="csiD"
                     /locus_tag="JN078_002981"
     CDS             1903..2880
                     /gene="csiD"
                     /locus_tag="JN078_002981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311547.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation induced protein CsiD"
                     /protein_id="HAY9042112.1"
                     /translation="MNALIAVQNNAVDSGQDYSGFTLIPSAQSPRLLELTFTEQTTKQ
                     FLEQVAEWPVQALEYKSFLRFRVGKILDDLCANQLQPLLLKPLLNRAEGALLINAVGI
                     DDVAQADEMVKLATAVAHLIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELH
                     NDGTYVEEITDYVLMMKIDEQNMQGGNSLLLHLDDWEHLDHYFRHPLARRPMRFAAPP
                     SKNVSKDVFHPVFDVDQQGRPVMRYIDQFVQPKDFEEGVWLSELSDAIETSKGILSVP
                     VPVGKFLLINNLFWLHGRDRFTPHPDLRRELMRQRGYFAYATHHYQTHQ"
     gene            2900..4168
                     /gene="lhgO"
                     /locus_tag="JN078_002982"
     CDS             2900..4168
                     /gene="lhgO"
                     /locus_tag="JN078_002982"
                     /EC_number="1.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417146.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-2-hydroxyglutarate oxidase"
                     /protein_id="HAY9042113.1"
                     /translation="MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESGPACHQTG
                     HNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQNDIRYDNCGKMLIATSDLEMERM
                     RALWERTAANGIEREWLNAEELREREPNITGLGGIFVPSSGIVSYREVTAAMAKIFQA
                     RGGEIIYNAEVSALSEHKNGVVVRTRQGGEYEASTLISCSGLMANRLVKMLGLEPGFI
                     ICPFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKR
                     EGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLS
                     LSDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRTIHTCNAPSPAATSAIPIGAHIVSK
                     VQTLLASQSNPGRTLRATRSVDALHAAFNQ"
     gene            4191..5626
                     /gene="gabD"
                     /locus_tag="JN078_002983"
                     /pseudo
     CDS             4191..5626
                     /gene="gabD"
                     /locus_tag="JN078_002983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311549.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent succinate-semialdehyde
                     dehydrogenase"
     gene            5640..6906
                     /gene="gabT"
                     /locus_tag="JN078_002984"
                     /pseudo
     CDS             5640..6906
                     /gene="gabT"
                     /locus_tag="JN078_002984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417148.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4-aminobutyrate--2-oxoglutarate transaminase"
     gene            7144..8505
                     /gene="gabP"
                     /locus_tag="JN078_002985"
     CDS             7144..8505
                     /gene="gabP"
                     /locus_tag="JN078_002985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005114089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GABA permease"
                     /protein_id="HAY9042114.1"
                     /translation="MGQSSQPHELGGGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAG
                     PAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW
                     VLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKV
                     IAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAE
                     IVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSV
                     LELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTP
                     YVAVLLSTGAAFLTVVVNYYVPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAE
                     GSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQQLEVISTDLLAIGIICTVPIMAA
                     GIS"
     gene            8564..9226
                     /gene="csiR"
                     /locus_tag="JN078_002986"
     CDS             8564..9226
                     /gene="csiR"
                     /locus_tag="JN078_002986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311552.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CsiR"
                     /protein_id="HAY9042115.1"
                     /translation="MTITSLDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLR
                     EALSQLVAERLVTVVNQKGYRVASMSEQELLDIFDARANMEAMLVSLAIARGSDEWEA
                     DVLAKAHLLSKLEACDASEKMLDEWDLRHQAFHTAIVAGCGSHYLLQMRERLFDLAAR
                     YRFIWLRRTVLSVEMLEDKHDQHQTLTAAVLARDTARASELMRQHLLTPIPIIQQAMA
                     GN"
     gene            complement(9227..9676)
                     /gene="kbp"
                     /locus_tag="JN078_002987"
     CDS             complement(9227..9676)
                     /gene="kbp"
                     /locus_tag="JN078_002987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium binding protein Kbp"
                     /protein_id="HAY9042116.1"
                     /translation="MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLSKTGIPDAD
                     KVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGIASVDDQVKTATPATASQFYTVK
                     SGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPEE"
     gene            complement(9760..9918)
                     /locus_tag="JN078_002988"
     CDS             complement(9760..9918)
                     /locus_tag="JN078_002988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaE/Pmp3 family membrane protein"
                     /protein_id="HAY9042117.1"
                     /translation="MGFWRIVITIILPPLGVLLGKGFGWAFIINILLTLLGYIPGLIH
                     AFWVQTRD"
     gene            10101..10400
                     /locus_tag="JN078_002989"
     CDS             10101..10400
                     /locus_tag="JN078_002989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAY9042118.1"
                     /translation="MTELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGEL
                     TRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKNVYCP"
     gene            10410..10934
                     /gene="ygaP"
                     /locus_tag="JN078_002990"
     CDS             10410..10934
                     /gene="ygaP"
                     /locus_tag="JN078_002990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase YgaP"
                     /protein_id="HAY9042119.1"
                     /translation="MALTTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLS
                     VLEQSGLPPKLRREQIIFHCQAGKRTSNNADKLAAIAAPAEIFLLEDRIDGWKRAGLP
                     VAVNKSQPLPLMRQVQIAAGGLILIGVVLGYTVNSGFFLLSGFVGAGLLFAGISGFCG
                     MARLLDKMPWNQRA"
     gene            complement(10981..11385)
                     /gene="stpA"
                     /locus_tag="JN078_002991"
     CDS             complement(10981..11385)
                     /gene="stpA"
                     /locus_tag="JN078_002991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein StpA"
                     /protein_id="HAY9042120.1"
                     /translation="MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEE
                     EQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDV
                     NGETKTWTGQGRTPKPIAQALAEGKSLDDFLI"
     gene            12052..12501
                     /gene="alaE"
                     /locus_tag="JN078_002992"
     CDS             12052..12501
                     /gene="alaE"
                     /locus_tag="JN078_002992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-alanine exporter AlaE"
                     /protein_id="HAY9042121.1"
                     /translation="MFSPQSRLRHAVADTFAMVVYCSVVNMCIEVFLSGMSFEQSFYS
                     RLVAIPVNILIAWPYGMYRDLFMRAARKVSPSGWIKNLADILAYVTFQSPVYVAILLV
                     VGADWHQIMAAVSSNIVVSMLMGAVYGYFLDYCRRLFKVSRYQQVKA"
     gene            complement(12538..12882)
                     /locus_tag="JN078_002993"
     CDS             complement(12538..12882)
                     /locus_tag="JN078_002993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgaC family protein"
                     /protein_id="HAY9042122.1"
                     /translation="MYLRPDEVARVLEKVGFTVDVVTQKAYGYRRGENYVYVNREARM
                     GRTALVIHPTLKERSSTLAEPASDIKTCDHYQQFPLYLAGERHEHYGIPHGFSSRVAL
                     ERYLNGLFGEAS"
BASE COUNT         3218 a         3164 c         3294 g         3233 t
ORIGIN      
        1 atcagggaaa atatgtctga gtttgcacgt tgccattatg ggtatataca aatccctcca
       61 gtgacaactt tccgcgccga cggaccagaa actcccgaag aagaaaaagg ttactggttt
      121 catgcttatc aacccgaaga tctttgtacc atccataacc caatgggaga tttgcaggat
      181 tttatcgcat tggttaaaga tgctaaaaaa tttggtatcg atatcattcc tgattataca
      241 tttaacttta tgggaatcgg gggtagtggt aaaaatgacc tggattatcc ctctgctgat
      301 atacgagcga agatcagtaa agatatagaa agcggtatcc ctggctattg gcaaggtcag
      361 gttttgattc cattcattaa agatccagta acaaaagaac gtaaacaaat ccatccagaa
      421 gatatacatc tcactgcaaa agacttcgaa gcaagtaaag ataacatctc taaggatgaa
      481 tgggaaaacc tccatgcatt aaaagaaaag cgtttaaatg gaatgcctaa aacaacaccc
      541 aaaagtggcc aggttattat gttgcaaaat caatacgttc gagaaatgcg aaaatatggc
      601 gtacgaggtt tacgttatga tgcggcaaaa cactcaaaac atgaacaaat agagaggtcg
      661 ataaccccac cgcttaaaaa ttataatgag cggttacaca atactaattt atttaaccca
      721 aaatatcaaa aaaaagccgt tatgaattac atggaatacc tggtaacttg tcagttggat
      781 gaacaacaaa tgtcatcact gctttatgag agagatgatt taagtgccat tgatttttct
      841 ttactcatga aaacgataaa agccttttca tttggtggag atctccaaac ccttgcatca
      901 aaaccgggtt ccacaatctc aagtatccca tcagaaagac ggatattgat taacattaac
      961 cacgattttc ctaacaatgg taatcatttt caatgacttt ctatttaacc atcaacaaga
     1021 tgaacaatta gcaatggcat atatggccgc tctcccgttc agcagacctt tagtttactg
     1081 ggatggccaa gtattaaaat caacgactga aattaaaaat tatgatgggt ccacgcgtgt
     1141 cggcggtgag gcgtggctta ataaaggttg ctctacctat cagcagctct acaatgaatt
     1201 ccacgcatta tatatagata aagcaggaat atggagcgca tttgagggtg tatttgcaac
     1261 taaaaacgtt ctggccttta gtcgtgggga ttctgtgaac attaatcact ctcctcatga
     1321 tgggctagtt ataataaata aaggaaacga agaagttgaa ggtacctggc ctaacaaatt
     1381 gcaacctgga atatacaaaa acatggggag taatagcgtt aacattatta ttaataatac
     1441 ccgaaaaatt atcccccctg gtaaagtatt tacgcttaga ggcggaactc taaatatcaa
     1501 tattcctggg cgtagcgctc ttcttttagg gaaaacagga gaaccgccga actatctcta
     1561 tttataattt aatgttatat ctgccccgat aaaacggggc agataatatg tttagtttac
     1621 taacggtcat tttgcagtga agccatttac tgttttttat cgaccagata atctgttctc
     1681 taatgttaac tccccctaac ctgttgcttt agttattcat ttcctgtctc actttgcctt
     1741 aataccctac gttaaatgtt actaatttgt tgtttttgat cacaataaga aaacaatatg
     1801 tcgcttttgt gcgcattttt cagaaatgta gatattttta gattatggct acgaaatgag
     1861 catcgccatg tcaccctaca tctcataaga ggatcgcttc tgatgaatgc actgatcgcc
     1921 gtacaaaata acgctgtcga ttcaggccag gactatagcg gattcactct catcccgtcg
     1981 gcgcaatccc cgcgtctgct ggaactcacc ttcaccgaac agacgaccaa acagtttctc
     2041 gaacaggttg ccgaatggcc cgtgcaggcg ctggagtaca aatcgtttct gcgttttcgg
     2101 gtaggcaaaa ttcttgacga tctgtgtgcg aatcagctgc aaccattgct gttgaagccc
     2161 ctgctaaacc gtgctgaagg tgcgctgttg atcaatgcgg tgggtatcga tgatgtggcg
     2221 caggcagatg agatggtgaa gctggcaacg gcggtagcgc atctgattgg tcgctcaaat
     2281 ttcgatgcga tgagcggtca gtattacgcg cgtttcgtgg tgaaaaatgt cgataactca
     2341 gacagctatc tgcgtcagcc gcaccgcgtg atggaactgc acaacgacgg cacgtatgtc
     2401 gaagagatca ccgattacgt gctgatgatg aaaatcgatg agcaaaacat gcagggtgga
     2461 aattcgttgc tgctgcatct cgatgactgg gaacatctgg accactattt ccgccatcca
     2521 ctggcgcgtc gcccgatgcg ctttgccgcg ccgccgagca aaaacgtcag caaagatgtt
     2581 ttccatccag tgttcgacgt tgatcaacag ggtcgcccgg tgatgcgcta tatcgaccag
     2641 ttcgtccagc caaaagattt tgaagaaggc gtgtggttga gcgagctttc cgatgccatt
     2701 gaaaccagca aaggcattct ttctgtaccc gttcccgttg gcaaattcct gttgataaac
     2761 aacctgttct ggctgcacgg tcgcgaccgc tttactccgc acccggatct gcgccgtgaa
     2821 ctgatgcgtc agcgtggcta tttcgcttac gccactcacc actaccagac gcatcagtaa
     2881 gcgcaaagga attgagcgga tgtatgattt tgtgattatt ggcggcggca tcatcggcat
     2941 gtcgaccgcc atgcaactga ttgatgttta tccggatgcc cgcattgcgt tgctggaaaa
     3001 agagtccggc ccggcctgtc accagacggg ccacaacagc ggcgtgatcc atgccggggt
     3061 ctattacacg cccggcagcc tgaaggcgca gttttgcctg gcgggaaacc gcgccaccaa
     3121 agccttttgc gatcaaaacg acattcgcta tgacaactgc ggcaagatgc tgatcgccac
     3181 gtccgatctc gaaatggaac ggatgcgcgc gttgtgggaa cgcacggcgg cgaacggtat
     3241 cgagcgcgag tggttaaacg ccgaggaact gcgcgagcgc gaaccgaata tcaccgggct
     3301 cggcggcatt tttgtgccgt ccagcggcat tgtcagctat cgcgaagtca cagcggcaat
     3361 ggcaaaaatc ttccaggcca gaggcggtga gattatttat aacgccgaag tcagcgccct
     3421 cagtgagcat aaaaacggcg tggtcgtccg aacccgtcag ggcggcgaat atgaagcatc
     3481 gacgctgatt agctgttccg ggctgatggc taaccggctg gtgaaaatgc tcggcctcga
     3541 accgggtttt attatctgcc cgttccgtgg cgagtatttc cgccttgcgc cggagcataa
     3601 ccagattgtt aaccatctga tttaccccat ccctgacccg gcaatgccgt ttttgggcgt
     3661 gcatctcacc cgcatgatcg acggcagcgt gaccgtcggg ccaaacgcgg tgctggcttt
     3721 taaacgcgaa ggctatcgca agcgcgactt ctcatttagc gacacgctgg aaattttagg
     3781 ctcgtcgggg attcgccggg tgctgcaaaa ccatctacgc tcaggactgg gcgagatgaa
     3841 aaactcgctg tgcaaaagcg gctatctgcg gctggtgcaa aagtattgtc cccggctttc
     3901 gttaagcgat ctccagccct ggcccgccgg tgtgcgggcg caggcggtat cgccggacgg
     3961 caagctgatt gacgattttc tgtttgtcac caccccgcgc acgatccaca cctgcaatgc
     4021 gccctccccg gcagcgacat cagcaattcc tattggtgcg catattgtca gcaaggtaca
     4081 aacgctgttg gcaagccaga gtaaccccgg acgcacgctg cgagcgacac gtagtgtgga
     4141 tgccttacac gccgcattta atcaataacc tttgaaaaca ggacgtaaca atgaaactta
     4201 acgacagtaa cttattccgc cagcaggcgt tgattaacgg ggaatggctg gacgccaaca
     4261 atggcgggat catcgacgtc accaatccgg cgaacggcga caagctgggt agcgtgccga
     4321 aaatgggcgc tgatgaaacc cgcgccgcta tcgacgccgc caaccgcgcc ctgcccgcca
     4381 ggcgtgcgct caccgccaaa gaacgcgcca acattctgcg caactggttc aatttgatga
     4441 tggagcatca ggacgattta gcgcgcctga tgaccctcga acagggcaaa ccactggccg
     4501 aagcgaaagg cgaaatcagc tacgctgcct cttttattga gtggtttgcc gaagaaggca
     4561 aacgtattta tggcgatacc attcccggtc atcaggccga taagcgcctg attgttatca
     4621 agcagccgat tggcgttacc gcagctatca cgccgtggaa cttcccggcg gcgatgatta
     4681 cccgtaaagc cggtccggcg ctggcggcag gctgcaccat ggtgctgaag cccgccagtc
     4741 agacaccgtt ctctgcgctg gcgctggcgg agctggcgat tcgcgcgggc attgcggctg
     4801 gcgtgtttaa cgtggtcacc ggttcggcag gcgcggtcgg taatgaactg accagcaacc
     4861 cgctggtacg caaactgtcg tttaccggtt cgaccgaaat tggccgacag ttaatggaac
     4921 agtgcgcgaa agacatcaaa aaagtgtcgc tggagctggg cggcaacgcg ccgtttatcg
     4981 tctttgacga tgccgatctc gataaagccg tggaaggcgc gctggcctcg aaattccgca
     5041 acgccgggca aacctgcgtc tgcgccaacc gtttggcgtg tatgaccgct ttgccgaaaa
     5101 attgcagcag gcggtgagca aactgcacat cggcgacggg ctggataaag gcgtcaccat
     5161 cgggccgctg atcgatgaaa aagcggtagc aaaagtggaa gagcatattg ccgatgcgct
     5221 ggagaaaggt gcgcgtgtgg tttgcggcgc taaagcggat gaacgcggcg gcaacttctt
     5281 ccagccgacc attctggtgg acgtgccggc caacgccaaa gtgtcgaaag aagagacgtt
     5341 cggccccctc gccccgctgt tccgctttaa agatgaagcc gatgtgattg cgcaagccaa
     5401 tgacaccgag tttggccttg ccgcctattt ctacgcccgt gatttaagcc gcgtcttccg
     5461 cgtgggcgaa gcgctggagt acggcatcgt cggcatcaat accggcatta tttccaatga
     5521 agtggccccg ttcggcggca tcaaagcctc gggtctgggt cgtgaaggtt cgaagtatgg
     5581 catcgaagat tacttagaaa tcaaatatat gtgcatcggt ctttaactgg agaatgcgaa
     5641 tgaacagcaa taaagagtta atgcagcgcc gcagtcaggc gattccccgt ggcgttgggc
     5701 aaattcaccc gattttcgct gaccgcgcgg aaaactgccg ggtgtgggac gttgaaggcc
     5761 gtgagtatct tgatttcgcg ggcgggattg cggtgctcaa taccgggcac ctgcatccga
     5821 aggtggtggc cgcggtggaa gcgctgttga aaaaactgtc gcacacctgc ttccaagtgc
     5881 tggcttacga gccgtatctg gagctgtgcg agattatgaa tcagaaggtg ccgggcgatt
     5941 tcgccaagaa aacgctgctg gttacgaccg gttccgaagc ggtggaaaac gcggtaaaaa
     6001 tcgcccgcgc cgccaccaaa cgtagcggca ccatcgcttt tagcggcgcg tatcacgggc
     6061 gcacgcatta cacgctggcg ctgaccggca aggtgaatcc gtactctgcg ggcatggggc
     6121 tgatgccggg tcatgtttat cgcgcgcttt atccttgccc gctgcacggc ataagcgagg
     6181 atgacgctat cgccagcatc caccggatct tcaaaaatga tgccgcgccg gaagatatcg
     6241 ccgccatcgt gattgagccg gttcagggcg aaggcggttt ctacgccgcg tcgccagcct
     6301 ttatgcagcg tttacgcgct ctgtgtgacg agcacgggat catgctgatt gccgatgaag
     6361 tgcagagcgg cgcggggcgt accggcacgc tgtttgcggt ggagcagatg ggcgtggcgc
     6421 cggatcttac cacctttgcg aaatcgatcg ctggcgggcg tcaccgggcg cgcggaagtg
     6481 atggacgctg ttgcaccggg cggtctgggc ggcacctatg ccggtaaccc gattgcctgc
     6541 gtggctgcgc tggaagtgtt gaaggtgttc gagcaggaaa atctgctgca aaaagccaac
     6601 gatctggggc agaagctaaa agacggattg ttggcgatag ccgaaaaaca cccggagatc
     6661 ggcgacgtac gcgggctggg agcgatgatt gccatcgagc tgtttgaaga tggcgatcac
     6721 agcaaaccgg acgcaaaact caccgccggg atcgtggcac gcgcccgcga taagggcctg
     6781 attcttctct cctgcggccc gtattacaac gtgctgcgca tccttgtact gctcaccatt
     6841 gaagacgctc agatccgtca gggtctggag attatcggtc agtgttttga tgaggcgaag
     6901 cagtagcacc gtccccatgc aggaggcgac gctgcgcgtc ttgtccggcc tacgagaatc
     6961 caggtcggat aaggcgttta cgccgcatcc gacaatctgt acgtgaacag gaataaatct
     7021 atgtcggccg gataatgcgg agccgctctc cggcaaaaag aatcaataac aattaaacgc
     7081 gtgacccggc gcgggaaatg tcggggcgct ctcccaagtg acacactttc gagaggattc
     7141 aggatggggc aatcatcgca accacatgag ttaggcggcg ggctgaaatc acgccacgtc
     7201 accatgttgt ctattgccgg tgttatcggc gcaagtctgt ttgtcggttc cagcgtcgcc
     7261 atcgccgaag cgggcccggc agtattactg gcctatctgt tcgccgggct actggtggtt
     7321 atgattatgc ggatgttggc ggaaatggcg gttgccacgc ccgataccgg ttcgttttcc
     7381 acctatgccg ataaagccat tggtcgctgg gcgggctata ccatcggctg gttgtactgg
     7441 tggttttggg tactggttat cccgctggaa gccaacatcg ccgccatgat cctgcactcg
     7501 tgggttccag gcattcccat ctggttattt tccctcgtca ttacccttgc cttaactggc
     7561 agtaatttat taagcgttaa aaactacggc gaatttgagt tctggctggc gctgtgcaaa
     7621 gtcatcgcta tcctggcctt tattttcctt ggtgcagtcg caattagcgg tttttaccct
     7681 tatgccgaag tgagcgggat ctcaagattg tgggatagcg gcggctttat gcccaacggc
     7741 ttcggtgcgg tattaagcgc gatgttgatc accatgttct cgtttatggg cgcagaaatt
     7801 gtcaccattg ccgccgcgga atccgacacg ccggaaaaac atattgtccg cgccactaac
     7861 tcggttatct ggcgtatttc tatcttctat ttgtgctcta tttttgtcgt cgtggcatta
     7921 attccgtgga atatgcccgg actaaaagcc gtcggttctt atcgctcggt actggaattg
     7981 ctcaatattc cccatgcgaa attaatcatg gactgtgtga tattactttc cgtaaccagc
     8041 tgcctgaact cggcgctgta taccgcttcc aggatgctct actccttaag ccgtcgcgga
     8101 gatgcgcctg cggtaatggg taaaatcaac cgcagtaaaa ccccgtacgt ggcggtgtta
     8161 ctctccaccg gcgcggcatt cttaacggtg gtggtgaact attacgtgcc tgcgaaggta
     8221 tttaaatttc tgatcgacag ctccggcgct atcgccctgc tggtttattt agtcatcgcc
     8281 gtttcacagt tgcggatgcg caaaattctg cgagcagaag gaagcgaaat tcgcttgcgc
     8341 atgtggcttt atccctggct cacctggctg gtcatcggct ttattacctt tgtgttggta
     8401 gtgatgctat tccgcccggc gcaacagtta gaagtgatct ccaccgactt attagcaata
     8461 gggattatct gtaccgtgcc aattatggcg gctggaataa gctgataatg tggcaaaaaa
     8521 cacccgttca taatacgcgc tgataataat caggagtcac accatgacca ttacgtctct
     8581 ggatggctat cgctggctga agaacgatat tattcgcggt aattttcaac cggatgaaaa
     8641 attacggatg agtttgctga catcgcgtta tgcacttggc gttgggccgt tgcgggaagc
     8701 actttctcaa ctggtggcgg aacggctggt cacggtggtg aatcaaaaag ggtatcgggt
     8761 ggcgtctatg tcagagcagg agctgctcga tattttcgat gcccgcgcca atatggaagc
     8821 gatgttagtg agtctggcga ttgcccgcgg tagcgatgag tgggaggcag acgttctcgc
     8881 aaaagcgcat ctgctcagta agctggaagc ctgtgacgcc agcgagaaaa tgcttgatga
     8941 gtgggatctg cgtcatcagg cgtttcatac agcaattgtg gcgggctgtg gttctcacta
     9001 tttgctgcaa atgcgtgaac ggttgtttga tctggcggcg cgctatcgat ttatctggct
     9061 gcggcgaacg gtgctttcgg tagaaatgct ggaggataaa cacgatcagc accagaccct
     9121 gactgcggcg gtactggcgc gagataccgc gcgcgccagt gagttaatgc gccagcattt
     9181 actgacgcca attcccatta tccagcaggc gatggctggc aattaactac tcttccggaa
     9241 tacgcaacac ttgccccgga taaattttat ccgggctttt tagcatcggt ttattcgctt
     9301 cgaagatttt attgtacaga ttagcgttac cgtagacctg tttggaaatg gcactcagag
     9361 tgtcgccaga cttaacggta taaaactggc tggcagtggc tggtgtcgcc gttttcacct
     9421 gatcatcaac actggcaata ccggaaatat tccccaccgc aacaaggatt ttctccttcg
     9481 cctcctgact caggccgtca ccagtgaccg tcgctttgcc gtcggcaatt tgaatgttca
     9541 ctttatcggc atcaggtata ccggttttgc tcagatgctc ctgcaccttc ttcgcctgat
     9601 cgtctttatc gtgctgacct gtaaccgcgt cccagagttt ttctccggca tctttcacaa
     9661 aattgaacag acccatagct acctcattcg ttaacggaaa cactcagaaa gtgtagcaga
     9721 ggaacgcggc gcgttaacgc cgcggggggg agcacaggtt taatcgcggg tttgcaccca
     9781 gaacgcgtga atcaaaccgg ggatataccc aagcagtgtc agcagaatat taataatgaa
     9841 cgcccaaccg aaccctttac cgagcagcac gccgagcggc ggcagaatga tggtgatgac
     9901 gattctccag aaacccatat gtactcccta taagaaaatt actcattgtt taaaaagaga
     9961 ttttatctct taagcgtagt aattttagcg gagcctgcca gtttcagctt acgcttttac
    10021 tctcatttac gctgctgagg ctggtatatg ttgcattttt agtttagagt ttacttaatt
    10081 tagaaaatac ttaaataaat atgactgaac tcgcgcaatt acaggccagt gccgaacagg
    10141 cagcggcctt attgaaagca atgagccatc ctaaacgatt gctgattctg tgcatgctta
    10201 gcggttcccc cggcaccagc gcgggagagc tgacgcgcat taccggactg agtgcctctg
    10261 cgacatcaca gcatctcgct cgtatgcggg acgaagggct tatcgacagc caacgggatg
    10321 cccaacgcat tctatattcc attaaaaatg aggcggtaaa tgccattatc gccaccctga
    10381 aaaatgtcta ttgtccgtaa ggagtcacta tggctttgac aaccatttcg ccgcatgatg
    10441 cacaagaatt aatcgcacgc ggcgcaaagt taatcgatat tcgtgacgct gatgaatatc
    10501 ttcgtgaaca tattcctgaa gcagatctgg ctccattatc cgtgctggaa cagtcaggtc
    10561 ttccacctaa attacgtcgc gagcaaatta tattccactg ccaggcaggt aaacgcacca
    10621 gtaataacgc cgataaatta gcagcgattg ccgcccccgc agaaatattt ttactcgaag
    10681 ataggattga tggctggaaa agagctggat tgccagtagc ggtaaataaa tctcaaccct
    10741 tgccgttaat gcgccaggtg cagatcgctg cgggtggttt aatattaatc ggcgttgtac
    10801 tgggttatac cgtaaatagc ggtttcttct tattaagtgg ctttgttggt gccgggttac
    10861 tgtttgcagg aatcagcggt ttttgtggaa tggcaaggtt gttagataag atgccgtgga
    10921 accaacgagc ttgagaagcg acgccggacg cgccctagca gcgacatccg gcctcagtaa
    10981 ttagatcagg aaatcgtcga gagatttacc ttctgccagc gcctgagcaa ttggcttcgg
    11041 tgtacggccc tgaccggtcc aggtcttagt ttcaccgtta acatcagtga atttatattt
    11101 cgccggacgc ggctggcgtt ttttaccagc acgtggtgca gcagcagagc tattacccaa
    11161 taactcttcc gggttaattc cgtcagcttt catcagctcc agccaggtgc taattttttc
    11221 ctgacgctca gccagttcac gctgctgctg ttcttcttct tcacgtcttt ctttagtgac
    11281 aaccctgaat ttttcgagca tttcttcaag aacgtcaatg gagaattcgc gagccatcgc
    11341 acggagggtt cgaatgttat ttaaactttg taacattacg gacataataa agaaaacctt
    11401 ttaacgccaa aacaaaaaag tatttcgtcg cgtagtgtaa gcgatcactt attatatttc
    11461 cacaaaattt aatctattta cagtcctgcg cgagattatt tcagctgtta ttttctgaaa
    11521 ctctcagaat aatttcaaga ttatatatta gccattttga tgagtaattt aggttattgg
    11581 tgaacagagt ggcgctctct gctcgctaac tccgcaagcc tgataaaacc gaagtgaata
    11641 aaaatgcaat ataacagaat aaaagaaaac acccctcact ggtgctttct gctgttaatg
    11701 tacattttct ggcatcaaaa atgctgtaaa tgacccggtc acgacaaaca ccgaattctc
    11761 tacgcttata gcgttacctc acccccaaac tttcattagt gaaattaaag gcaaggtcat
    11821 atccaattga tttaattgaa aataaatcat atcggcatgt aaaaatccac aatgtacaaa
    11881 aaacgagctg ttacggaata ttttatctac aaaaactgac taaataaaag tttttcacta
    11941 attgattagt catagccagc gatatacgct atgcgaaaat gcagatggca atgagatcca
    12001 ctgctttcat ctccattaac atcccattac gctttattaa ggagcattag catgttctca
    12061 ccgcagtcac gcttgcgtca tgcagttgca gatacgttcg cgatggttgt ttactgttct
    12121 gtcgtgaaca tgtgtattga agttttcctc tccggaatga gcttcgaaca gtctttttat
    12181 tccagattgg tagcgattcc ggtgaacatc ttaattgcat ggccatacgg tatgtaccgc
    12241 gatctgttta tgcgcgcggc acgcaaagtt agcccgtcgg gctggataaa aaatctggct
    12301 gatatcctgg cttatgtgac gttccagtca ccggtgtatg tggcgatctt gttagtggtg
    12361 ggcgcagact ggcatcagat tatggcggcg gtcagttcaa acatcgttgt ttcgatgttg
    12421 atgggggcgg tttatggcta cttcctcgat tattgccgcc gactgtttaa agtcagccgt
    12481 taccagcagg taaaagcctg actcttcttt tcgcgactgg catcgccagt cgcgtcttta
    12541 actggcttcg ccaaataaac cattcaaata acgttcaagc gcaacacgcg aactgaagcc
    12601 atgcgggata ccgtaatgct cgtgtcgctc gcctgctaaa tagagcggaa attgctggta
    12661 atgatcgcaa gttttaatat cggaagcggg ttcagccagt gttgaactgc gttcttttaa
    12721 tgttggatga attaccagag cggtacgtcc cattcgcgct tcgcgattaa catagacata
    12781 attttcccca cggcggtaac catacgcttt ctgggttacc acatcgacag taaaaccgac
    12841 tttttcaagt acgcgcgcca cctcgtctgg tcgtaaatac atatttgatc ctcgttattt
    12901 tcaaccgcg
//
LOCUS       DADMJB010000122        12845 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.122, whole genome shotgun sequence.
ACCESSION   DADMJB010000122 DADMJB010000000
VERSION     DADMJB010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12845)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12845)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12845
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.122"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(93..1184)
                     /gene="ychF"
                     /locus_tag="JN078_002994"
     CDS             complement(93..1184)
                     /gene="ychF"
                     /locus_tag="JN078_002994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001538644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HAY9042123.1"
                     /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVV
                     PMPDPRLDQLAEIVKPQRTLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGH
                     VVRCFENDNIIHVSGKVNPADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKA
                     ELAVLEKCLPQLENAGMLRALDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPY
                     LDQVREIAAKEGSVVVPVCAAVEADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKL
                     LNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQTISFEDFITYKGEQ
                     GAKEAGKMRAEGKDYIVKDGDVMNFLFNV"
     gene            complement(1301..1885)
                     /gene="pth"
                     /locus_tag="JN078_002995"
     CDS             complement(1301..1885)
                     /gene="pth"
                     /locus_tag="JN078_002995"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HAY9042124.1"
                     /translation="MTIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAK
                     FFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGV
                     AKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQK
                     LIDEAIDEAARCTEMWFTDGLTKATNRLHAFKAQ"
     gene            2163..2441
                     /gene="ychH"
                     /locus_tag="JN078_002996"
     CDS             2163..2441
                     /gene="ychH"
                     /locus_tag="JN078_002996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress-induced protein YchH"
                     /protein_id="HAY9042125.1"
                     /translation="MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAH
                     GAVLSIFVGAILWLAGARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS"
     gene            complement(2496..4175)
                     /gene="dauA"
                     /locus_tag="JN078_002997"
     CDS             complement(2496..4175)
                     /gene="dauA"
                     /locus_tag="JN078_002997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415724.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylic acid transporter DauA"
                     /protein_id="HAY9042126.1"
                     /translation="MNKIFSSHVMPFRALIDACWKEKYTAARFTRDLIAGITVGIIAI
                     PLAMALAIGSGVAPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVIIYPVSQQFGL
                     AGLLVAALLSGIFLILMGLARFGRLIEYIPVSVTLGFTSGIGITIGTMQIKDFLGLQM
                     AHVPEHYLQKVGALFMALPTINVGDAAIGIVTLGILVFWPRLGIRLPGHLPALLAGCA
                     VMGIVNLLGGHVATIGSQFHYVLADGSQGNGIPQLLPQLVLPWDLPNSEFTLTWDSIR
                     TLLPAAFSMAMLGAIESLLCAVVLDGMTGTKHKANSELVGQGLGNIIAPFFGGITATA
                     AIARSAANVRAGATSPISAVIHSILVILALLVLAPLLSWLPLSAMAALLLMVAWNMSE
                     AHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIARMTRLAP
                     VVVDVPDDVLVLRVIGPLFFAAAEGLFTDLESRLEGKRIVILKWDAVPVLDAGGLDAF
                     QRFVKRLPEGCELRVCNVEFQPLRTMARAGIQPISGRLAFFPNRRAAMADL"
     gene            complement(4300..5247)
                     /locus_tag="JN078_002998"
     CDS             complement(4300..5247)
                     /locus_tag="JN078_002998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HAY9042127.1"
                     /translation="MPDMKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQI
                     NENVRGGDIFIIQSTCAPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVR
                     SARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQLN
                     LDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVL
                     VDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAANNLRNSVIDEVVVCDTIP
                     LSDEIKSLPNVRTLTLSGMLAEAIRRISNEESISAMFEH"
     gene            complement(5398..6249)
                     /gene="ispE"
                     /locus_tag="JN078_002999"
     CDS             complement(5398..6249)
                     /gene="ispE"
                     /locus_tag="JN078_002999"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HAY9042128.1"
                     /translation="MRTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIE
                     LRDDGDIRLLTPVEGVEHEDNLIVRAARLLMKTAADSGRLPTGSGANISIDKRLPMGG
                     GLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGHAAFAEGVGEIL
                     TPVDPPEKWYLVAHPGVSIPTPVIFKDPELPRNTPKRSIETLLKCEFSNDCEVIARKR
                     FREVDAVLSWLLEYAPSRLTGTGACVFAEFDTESEARQVLEQAPEWLNGFVAKGVNLS
                     PLHRAML"
     gene            complement(6249..6872)
                     /gene="lolB"
                     /locus_tag="JN078_003000"
     CDS             complement(6249..6872)
                     /gene="lolB"
                     /locus_tag="JN078_003000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein localization protein LolB"
                     /protein_id="HAY9042129.1"
                     /translation="MPLPDFRLIRLLPLAALVLTACSVTTPKGPGKSPDSPQWRQHQQ
                     DVRNLNQYQTRGAFAYISDQQKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGN
                     VQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEI
                     TYSQNGKNWKVVYGGYDTKTHPAMPANMELTDGGQRIKLKMDNWIVK"
     gene            7086..8342
                     /gene="hemA"
                     /locus_tag="JN078_003001"
     CDS             7086..8342
                     /gene="hemA"
                     /locus_tag="JN078_003001"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707119.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HAY9042130.1"
                     /translation="MTLLALGINHKTAPVSLRERVSFSPDKLDQALDSLLAQPMVQGG
                     VVLSTCNRTELYLSVEEQDNLQEALIRWLCDYHNLNEEDLRKSLYWHQDNDAVSHLMR
                     VASGLDSLVLGEPQILGQVKKAFADSQKGHMKASELERMFQKSFSVAKRVRTETDIGA
                     SAVSVAFAACTLARQIFESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRER
                     AQILADEVGAEVIALSEIDERLREADIIISSTASPLPIIGKGMVERALKSRRNQPMLL
                     VDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETSEFMA
                     WLRAQSASETIREYRSQAEHVRDELTAKALAALEQGGDAQAIMQDLAWKLTNRLIHAP
                     TKSLQQAARDGDNERLNILRDSLGLE"
     gene            8384..9466
                     /gene="prfA"
                     /locus_tag="JN078_003002"
     CDS             8384..9466
                     /gene="prfA"
                     /locus_tag="JN078_003002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012132158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HAY9042131.1"
                     /translation="MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQ
                     LSDVSRCFTDWQQVQEDIETAQMMLDDPEMREMAQDELRKAKEKSEQLEQQLQVLLLP
                     KDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYK
                     EIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDIN
                     PADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGA
                     RIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME
                     GKLDMLIEPIIQEHQADQLAALSEQE"
     gene            9466..10299
                     /gene="prmC"
                     /locus_tag="JN078_003003"
     CDS             9466..10299
                     /gene="prmC"
                     /locus_tag="JN078_003003"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HAY9042132.1"
                     /translation="MEYQHWLREAISQLQASESPRRDAEILLEHVTGRGRTFILAFGE
                     TQLTDEQCQQLDALLTRRRDGEPIAHLTGGREFWSLPLFVSPATLIPRPDTECLVEQA
                     LARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKN
                     IHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIV
                     HIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRYY
                     Q"
     gene            10296..10688
                     /locus_tag="JN078_003004"
     CDS             10296..10688
                     /locus_tag="JN078_003004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB family protein"
                     /protein_id="HAY9042133.1"
                     /translation="MTSFSTLLSVHLISIALSVGLLTLRFWLRYQKHPQAFARWTRIV
                     PPVVDTVLLLSGIALMAKAHILPFSGQAQWLTEKLFGVIIYIVLGFIALDYRRMHSQQ
                     ARIIAFPLALVVLYIIIKLATTKVPLLG"
     gene            10692..11501
                     /locus_tag="JN078_003005"
     CDS             10692..11501
                     /locus_tag="JN078_003005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat-containing protein"
                     /protein_id="HAY9042134.1"
                     /translation="MRSLADFEFNKAPLCEGMILACEAIRRDFPSQDVYDELERLVSL
                     AKEEISQLLPLEEQLEKLIALFYGDWGFKASRGVYRLSDALWLDPVLKNRQGSAVSLG
                     AVLLWVANRLDLPLLPVIFPTQLILRIECPDGEIWLINPFNGESLSEHMLDVWLKGNI
                     SPSAELFYEDLDEADNIEVIRKLLDTLKASLMEENQMELALRTSEALLQFNPEDPYEI
                     RDRGLIYAQLDCEHVALNDLSYFVEQCPEDPISEMIRAQINNIAHKHIVLH"
     gene            11537..12391
                     /gene="kdsA"
                     /locus_tag="JN078_003006"
     CDS             11537..12391
                     /gene="kdsA"
                     /locus_tag="JN078_003006"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HAY9042135.1"
                     /translation="MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTV
                     TQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKIFQELKQTFGVKIITDVHEPSQA
                     QPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN
                     EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRR
                     AQVAELARAGMAVGLAGLFIEAHPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKG
                     FEELDTSK"
     gene            complement(12540..12647)
                     /locus_tag="JN078_003007"
     CDS             complement(12540..12647)
                     /locus_tag="JN078_003007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small toxic polypeptide LdrA/LdrC"
                     /protein_id="HAY9042136.1"
                     /translation="MTLAQFAMIFWHDLAAPILAGIITAAIVGWWRNRK"
BASE COUNT         3189 a         3270 c         3334 g         3052 t
ORIGIN      
        1 ggtgaaatga aaaatccacg caattgcgtg gattttatat acttttgcgc tcttcatgag
       61 atttagcgaa acctcatgag acaataaatt aattagacgt tgaaaaggaa gttcatcaca
      121 tcgccatctt tcacgatgta atctttacct tctgcacgca ttttgcctgc ttctttcgcg
      181 ccttgttcac ctttgtaagt gatgaaatct tcaaacgaga tggtttgtgc acggataaag
      241 cctttttcaa aatcagtatg gattttgccc gctgcctgcg gcgcggttgc tccaaccgga
      301 atggtccatg cacgcacttc tttcacccca gcggtgaagt aagtttgcag gttcagcagc
      361 ttataaccgg cacggatcac acggttcagg cccggctctt ccagcccaag ctcctgcata
      421 aactcgtcac gttcttcgtc gtccagttcg gcaatgtctg cttcaacagc agcacaaacc
      481 ggaaccacaa cagaaccttc tttcgccgcg atttcacgca cctggtcaag atatgggttg
      541 ttttcaaaac cgtcttcgtt gacgttggcg atgtacattg ttggtttcag cgtcaggaag
      601 ctcaggtaac gaatagccgc tttctcttca gcgcttaaat ccagcgcgcg cagcatacct
      661 gcattttcca actggggcag gcatttttcc aggaccgcca gctcagcttt cgcgtcttta
      721 tcgccacctt tggctttctt ctgtacgcga tgaatcgcac gttcgcaggt gtcgaggtct
      781 gccagcgcca gttcggtgtt gataacttca atatcgtcag ccgggttaac tttgccggaa
      841 acgtgaatga tgttgtcatt ttcaaagcag cgaacaacgt gaccgatcgc ttcggtttca
      901 cggatgttgg tcaggaactg gttacccaga ccttcgcctt tcgatgcgcc ttttaccaga
      961 ccggcgatat cgacaaattc catggtcgtg ggaagcgtac gctgcggttt tacgatttca
     1021 gccagttgat ccaggcgagg atcaggcatt ggtacgacgc ctgtgttcgg ctcaatggtg
     1081 cagaatggaa agttggccgc ttcaataccg gctttggtca gcgcgttgaa cagggtagat
     1141 ttcccgacgt tgggcaaacc gacgataccg catttgaatc ccatgattta aatcacctta
     1201 atatcttaat aatcaacctg ttattgctaa cagattgcag aaatggaaat aactttgtct
     1261 attatacacg gcactcggca aaaatgccgc agacaacgac ttattgcgct ttaaaggcgt
     1321 gcaatcggtt cgttgctttg gtcaagccat ctgtaaacca catttcagta caacgcgccg
     1381 cttcgtcaat ggcttcatca attaacttct gttcactaac aggcggtttg cctaacacaa
     1441 aaccgacaac tttattttta tcgcccggat gaccgattcc gatgcgtaaa cggtgaaagt
     1501 tagggttatt acccaattta ctgatgatgt ctttcagtcc attgtgacca ccatggccac
     1561 cgcccaattt aaatttggcg acgccaggag gcagatccag ttcgtcgtgg gccaccagaa
     1621 tttcgtccgg attaatgcgg aaaaaactgg ccatcgccgc aacggctttg ccgctgagat
     1681 tcataaatgt agtcgggact aacaggcgga catcttcgcc tccaagagtg actcgcgaag
     1741 tataaccaaa gaatttagcc tcttcgcgca gcggagcgcg caaacgctct gccagtaagt
     1801 caacgaacca ggcaccagca ttatgtcgcg ttgcggcgta ttcagcaccg gggttcgcca
     1861 ggccgacaat caatttaatc gtcacgtttt tttgtcctga gtgtgtacat aactggcgcg
     1921 tagtttactg gttgcgaccc cgcttgacaa aaaactgcgt atcaaatgca gataacgtaa
     1981 taattgcctg agtgggctat tagaaagtca aggtgttcag gcgtttattt gtaaagtttt
     2041 gttgaaataa gggttgtaat tgtgatcacg cccgcacata acccacaggg tgttgtctat
     2101 actttacaca taaggaagag gggtattccc tgttacaacc cagaaagttc cggaggtgac
     2161 atatgaaacg caaaaacgct tcgttactcg gtaacgtgct catggggttg ggtctggtgg
     2221 taatggtggt cggcgtgggg tattcaatcc tcaaccagtt accacagttt aatatgcccc
     2281 agtatttcgc acatggtgca gtgctaagta ttttcgtcgg tgccattctc tggctggcgg
     2341 gtgcccgtgt tggcgggcat gaacaggtgt gcgaccgtta ctggtgggtt cgccactatg
     2401 acaaacgttg ccgccgtagc gataatcgcc gtcatagcta acaaataatg cagtttgctg
     2461 accagtcagt ttgcgctgac tggtcaatct cgtacttata aatccgccat cgccgcgcga
     2521 cgattcggga agaacgcgag gcgtcccgag attggttgaa tgcctgcgcg agccatagtg
     2581 cgcagtggct ggaattccac gttgcacacg cgcagttcac atccttcggg cagacgcttc
     2641 acaaaacgct ggaacgcatc aagaccacca gcatcaagta ccggaacggc atcccacttc
     2701 agaatcacaa tccgtttgcc ttcaagacgt gactccaggt ccgtgaacaa gccttcagca
     2761 gcagcaaaaa acagcgggcc aataacgcgc agtaccagaa catcgtctgg aacatctacg
     2821 actaccggtg ccaggcgagt catacgtgcg atacgacgca taaacagcag cgatgccagc
     2881 acgatcccca cgctgatggc aataaccata tcaaacagca cggtcagcga catgcacagc
     2941 agcatgacaa tgatgtcatc tttcggtgca tgacgcagca agtcgaccac tttatgcgct
     3001 tcactcatgt tccacgccac catcaacagc agggctgcca tagcggaaag cggcagccag
     3061 gagagcagcg gtgccagtac cagcagggca agaataacca gaatagagtg gatcaccgct
     3121 gagatagggg aagttgcccc ggcacggacg ttagcggcag aacgcgcgat ggcagctgta
     3181 gcggtaatac caccaaagaa tggagcgata atattcccca gtccctgtcc aaccagttcg
     3241 ctgttcgcct tgtgtttcgt cccggtcata ccatccagta ccacggcgca gagcagagat
     3301 tcgattgcgc cgagcattgc cattgagaat gccgcaggca gcagtgtgcg aatagaatcc
     3361 caggttagcg tgaattctga attaggcaga tcccacggca gcaccagttg cggcagcagt
     3421 tgcggaatac cgttaccctg agaaccatcg gccaggacgt agtggaattg cgaaccgatg
     3481 gtagcaacat gtccgccgag caggttaaca atccccatca ccgcgcaacc agccagcaag
     3541 gccggaaggt gaccgggtaa acgaatgccc agacgcggcc aaaaaacaag aatacctagc
     3601 gtcacaatgc caatggcagc atcacccaca ttaatggtcg gcagcgccat aaataatgcg
     3661 ccgacttttt gtagataatg ttccgggaca tgggccattt gcagaccgag aaaatcttta
     3721 atctgcatgg taccgatggt gatcccgata cccgaggtga aacctaaggt gacggaaacc
     3781 ggaatatact caatcaggcg accaaagcgt gccagaccca tcagaatcaa aaagatcccc
     3841 gacagcaagg ccgcaaccag cagtcctgcc agtccaaact gttgcgacac gggatagata
     3901 attaccacaa atgccgcagt cggaccggaa acgctaaagc gtgacccacc cgtcagagca
     3961 atgacaatcc ccgcaacagc tgcggtatat aaaccgtact ggggtgccac accactacca
     4021 atagccaacg ccatcgccag cgggatagca ataatcccga cggttatccc ggcaatcagg
     4081 tcacgggtaa accgtgcggc agtatatttt tctttccagc aagcgtcgat cagagcgcgg
     4141 aaaggcatca catgtgagga aaatattttg ttcacaataa tgtttcatcc gtgagcgcat
     4201 catctgtcaa ctaaatggca ggtgaaggag gcataggtca tacaaatgga tattacagac
     4261 aaaaaaaccc gccgcagcgg gtctttgagc cgggttcgat tagtgttcga acatggcaga
     4321 gatcgattct tcgttgctga tacgacgaat cgcttcggcc agcatacctg acagggtcag
     4381 agtacgcacg ttcggcagtg atttgatttc atcgctcagc ggaatggtat cgcagacaac
     4441 gacttcatca attacagagt tacgcaggtt gttcgccgcg ttgccagaga agatcgggtg
     4501 agtcgcgtac gcaaatacac gtttagcacc acgttctttc agagcttcag cagctttaca
     4561 cagcgtaccg ccagtgtcga tcatatcatc gaccagtacg cagtcacgac ctgcaacgtc
     4621 accgatgata tgcatcacct gggaaacgtt cgcacgcgga cgacgtttgt cgatgattgc
     4681 catatcggta tcgttcagca gcttagcgat agcgcgggca cgcacaacgc cgccgatgtc
     4741 cggagaaacc acaattgggt tatccagatt cagctgcagc atgtcttcca gcaggatcgg
     4801 gctaccaaat acgttatcaa ccggaacgtc gaagaaaccc tgaatctgtt cagcgtgcag
     4861 atccactgtc agcacacggt caacaccgac gctggagagg aagtctgcaa ccactttcgc
     4921 agtgattggt acacgagcgg aacggacgcg acggtcctgg cgcgcatagc caaagtaggg
     4981 gataacagcg gtgatacgac ctgcggaagc acgacgcagg gcatcaacca taacgactaa
     5041 ttccatcagg ttgtcgttag taggggcaca agtggactgg atgatgaaaa tatcaccacc
     5101 gcgtacattt tcattaattt gtacgctgac ttcgccatcg ctaaagcgac ctacagcggc
     5161 gtcgccgagt gaagtgtaca ggcggttggc aatacgttgt gctagttccg gggtggcgtt
     5221 accagcaaaa agcttcatat caggcacgag aagaacctca ggcatgcgtc cattggtgga
     5281 aagaatctgc cgaaaactgt gcgggccagg catgatcctt tccaggcagt gtattaaaga
     5341 gcgcgatgca acgtctggaa caaggtgacg ttgtcaccga aactcagctt gcccggctta
     5401 aagcatggct ctgtgcaatg gggaaagatt aacgcctttc gccacaaagc cattgagcca
     5461 ttccggggct tgctctagca cctggcgggc ttcagactct gtatcaaatt cagcaaagac
     5521 acaggcccct gtcccagtca ggcgcgacgg ggcgtattct aacagccagg aaagcaccgc
     5581 atcaacctcg cgaaaacgtt ttcttgcgat aacctcgcaa tcattgctga attcacattt
     5641 tagcaacgtt tctattgacc tttttggcgt attgcgcggg agttcaggat ctttaaaaat
     5701 caccggagtc ggaatactta caccagggtg cgccaccaga taccacttct ctggcggatc
     5761 caccggcgtt agtatttcac caacgccttc ggcaaacgcg gcatgccccc gaacaaagac
     5821 aggaacatct gcgcccagcg tcagccccat ttccgccagc tcatccatgc ttagcccgca
     5881 ttgccagaga tgatttaatg ccaccaggac cgtcgcggca ttggatgaac caccgccgag
     5941 accgccgccc atcggcaaac gcttgtcaat gctgatattc gcaccgcttc ccgtcggaag
     6001 acgcccgctg tctgccgcag ttttcatcaa caatcgcgct gcgcgaacga tcaggttatc
     6061 ttcatgttcc acgccttcaa cgggcgttaa cagacgaata tccccatcgt cacgaagctc
     6121 aatgctgatg gtgtcgccgt aatcaagaaa ctgaaacagc gtttgcagcg tgtggtaacc
     6181 atccgcacgc tgaccggtaa tgtataaaaa cagattaagt tttgccggag agggccactg
     6241 tgtccgcatt atttcactat ccagttatcc atttttaact tgatgcgttg accaccgtcg
     6301 gtgagttcca tattggctgg catcgcagga tgcgttttgg tgtcataacc accataaaca
     6361 accttccagt ttttgccatt ctggctgtag gtaatttcgc tcaggcggta ctggtcgtcc
     6421 agtttgtagt cggttgcatc acccggtaaa cctaaaatcc actggcgcaa gctgttgagc
     6481 ggaattggca ttccggtcaa tttgccaatc atctcttcgg cgtcatcggc ggtataacgc
     6541 tgacctttat tgtcgactaa ctgcacgtta cccggttgag cattcagctc cagttccgtg
     6601 ctgcccaatg ggttagtgag cagcagacgg tagcgatcct ggccggtttg ctgccagaaa
     6661 aagcgggcgt acactttttg ttggtcagaa atataagcga acgcgccgcg agtctgatac
     6721 tgattaagat tgcgcacgtc ttgctgatgc tgacgccatt gtggcgaatc cgggcttttg
     6781 ccaggacctt tgggcgtggt aacggaacag gcagtgagca caagagcagc cagcggtagc
     6841 aggcggataa gacgaaaatc gggcaggggc atagtgatga caagtccttg agatacgttg
     6901 cagttataac ccttaatgct agcgttaccg tccgctatcg tctatgttca agttgtctta
     6961 attgccagaa tctaacggct ttcggcaatt actccaaaag ggggcgctct cttttattga
     7021 tcttacgcat cctgtatgat gcaagcagac taactctatc aacgttggta ttatttcccg
     7081 cagacatgac ccttttagca ctcggtatca accataaaac ggcacctgta tcgctgcgag
     7141 aacgtgtatc gttttcgccg gataagctcg atcaggcgct tgacagcctg cttgcgcagc
     7201 cgatggtgca gggcggcgtg gtgctgtcga cgtgcaaccg cacggaactt tatcttagcg
     7261 ttgaagagca ggataacctg caagaggcgt taatccgctg gctttgcgat tatcacaatc
     7321 ttaatgaaga agatctgcgt aaaagcctct actggcatca ggataacgac gcggttagcc
     7381 atttaatgcg tgttgccagc ggcctggatt cactggttct tggggagccg cagatcctcg
     7441 gtcaggttaa aaaagcgttt gccgattcgc aaaaaggtca tatgaaggcc agcgaactgg
     7501 aacgcatgtt ccagaaatct ttctctgtag cgaaacgcgt tcgcactgaa acagatatcg
     7561 gtgccagtgc tgtgtctgtc gcttttgcgg cttgtacgct ggcgcggcag atctttgaat
     7621 cgctctctac ggtcacagtg ttgctggtag gcgcgggcga aaccatcgag ctggtagcgc
     7681 gtcatctgcg cgaacataaa gtacagaaga tgattatcgc caaccgcact cgcgaacgtg
     7741 cccaaattct ggcagatgaa gttggcgcgg aagtgattgc cctgagtgag atcgacgaac
     7801 gtctgcgcga agccgatatc atcatcagtt ccaccgccag cccgttaccg attatcggga
     7861 aaggcatggt ggagcgcgca ttaaaaagtc gtcgtaacca accaatgctg ttggtggata
     7921 ttgccgttcc gcgcgatgtt gagccggaag ttggcaaact ggcgaatgct tatctttata
     7981 gtgtggacga tctgcaaagc atcatttcgc acaacctggc gcagcgtaaa gccgcagcgg
     8041 ttgaggcgga aactattgtc gctcaggaaa ccagcgaatt tatggcgtgg ctgcgagcac
     8101 aaagcgccag cgaaaccatt cgcgagtatc gcagccaggc agagcacgtt cgcgatgagt
     8161 taaccgccaa agcgttagcg gcccttgagc agggcggcga cgcgcaagcc attatgcagg
     8221 atctggcatg gaaactgact aaccgcttga tccatgcgcc aacgaaatca cttcaacagg
     8281 ccgcccgtga cggggataac gaacgcctga atattctgcg cgacagcctc gggctggagt
     8341 agcagtacat cattttcttt ttttacaggg tgcatttacg cctatgaagc cttctatcgt
     8401 tgccaaactg gaagccctgc atgaacgcca tgaagaagtt caggcgttgc tgggtgacgc
     8461 gcaaactatc gccgaccagg aacgttttcg cgcattatca cgcgaatatg cgcagttaag
     8521 tgatgtttcg cgctgtttta ccgactggca acaggttcag gaagatatcg aaaccgcaca
     8581 gatgatgctc gatgatcctg aaatgcgtga gatggcgcag gatgaactgc gcaaagctaa
     8641 agaaaaaagc gagcaactgg aacagcaatt acaggttctg ttactgccaa aagatcctga
     8701 tgacgaacgt aacgccttcc tcgaagtccg agccggaacc ggcggcgacg aagcggcgct
     8761 gttcgcaggc gatctgttcc gtatgtacag ccgttacgcc gaagcccgcc gctggcgggt
     8821 agaaatcatg agcgccagcg agggtgaaca tggtggttat aaagagatca tcgccaaaat
     8881 tagcggtgat ggtgtgtatg gtcgtctgaa atttgaatct ggcggtcatc gcgtgcagcg
     8941 tgttcctgct acggaatcgc agggtcgtat tcatacttct gcttgtaccg ttgcggtaat
     9001 gccagaactg cctgacgcag aactgccgga catcaaccca gcagatttac gcattgatac
     9061 tttccgctcg tcaggggcgg gtggtcagca cgttaacacc accgattcgg caattcgtat
     9121 tactcacttg ccgaccggga ttgttgttga atgtcaggat gaacgttcac aacataaaaa
     9181 caaagcgaag gcgctttcag tgctcggtgc tcgcatccac gctgctgaaa tggcaaaacg
     9241 ccaacaggcc gaagcgtcta cccgtcgtaa cctgctgggg agtggcgatc gcagcgaccg
     9301 taaccgtact tacaatttcc cgcaggggcg cgttaccgat caccgcatca acctgacgct
     9361 ctaccgcctg gatgaagtga tggaaggtaa gctggatatg ctgattgaac cgattatcca
     9421 ggaacatcag gccgaccaac tggcggcgtt gtccgagcag gaataatgga atatcaacac
     9481 tggttacgtg aagcaataag ccaacttcag gcgagcgaaa gcccgcggcg tgatgctgaa
     9541 atcctgctgg agcatgttac cggcagaggg cgtactttta ttctcgcctt tggtgaaacg
     9601 cagctgactg acgaacaatg tcagcaactt gatgcgctac tgacacgtcg tcgcgatggt
     9661 gaacccattg ctcatttaac cggggggcga gaattctggt cgttgccgtt atttgtttcg
     9721 ccagcgacct taattccgcg cccggatacg gagtgtctgg tggagcaggc actggcgcgg
     9781 ttgcctgaac aaccttgccg tattcttgat ctcgggacgg gtaccggggc gattgcgctt
     9841 gcgctggcta gcgagcgccc ggactgcgaa attatcgctg tagatcgtat gcctgatgct
     9901 gtctccctgg cacaacgtaa tgcccagcat ctggcgatca aaaatatcca cattctgcaa
     9961 agcgactggt ttagcgcgct agccgggcag cagtttgcga tgattgtcag caatccgccg
    10021 tatattgacg agcaggaccc acatcttcaa caaggcgatg tccgctttga gccgctcact
    10081 gcgctggttg cggcagacag tggaatggca gacatcgtgc atatcatcga acagtcgcgt
    10141 aacgcgctgg tatccggcgg ctttctgctt ctggaacatg gctggcagca gggcgaagcg
    10201 gtgcgacaag catttatcct cgcggggtat catgacgtcg aaacctgccg tgactatggt
    10261 gataacgagc gcgtaacgct cggccgctat tatcaatgac aagtttttct acactgctta
    10321 gtgttcatct tattagtatc gcgctttctg ttgggctatt aaccttacgt ttctggctac
    10381 gttatcagaa gcatccacag gcatttgctc gctggacgcg cattgtgccg ccggttgtcg
    10441 atacggtgtt attgttaagc ggcattgcgt tgatggctaa agcgcacatc ctgccatttt
    10501 ccgggcaggc acagtggctg actgaaaagc tgtttggagt tatcatttat atcgttttgg
    10561 gttttattgc actcgattat cgtcgtatgc acagtcagca ggcgcgcatt attgccttcc
    10621 cgctggcgtt ggtggtgctg tacatcatca ttaaactcgc caccacaaaa gtaccgttac
    10681 tggggtaagt catgagatcg ttagctgatt tcgaatttaa taaagcgcca ttgtgcgaag
    10741 gcatgatcct ggcttgcgaa gcaatccgcc gcgattttcc ctcgcaagat gtttacgacg
    10801 aactggagcg tctcgttagt ctggcgaagg aagaaatcag ccagcttctg cctttagaag
    10861 agcagctgga aaaactgatc gcgctgtttt acggcgactg gggatttaaa gcctcacgcg
    10921 gcgtttatcg tctttccgat gcattatggc tggacccggt gttaaagaat cgacagggca
    10981 gtgcggtatc attaggtgcg gttttattat gggtcgcgaa tcgtctcgat ttgccgctgc
    11041 tgccggtgat tttccctacg cagctgatat tgcgcattga atgtccggat ggcgaaattt
    11101 ggctgattaa tccttttaac ggtgaatcgt taagcgaaca tatgctggac gtatggttaa
    11161 agggaaatat cagcccgtcg gcggaactgt tttatgaaga ccttgatgaa gctgataaca
    11221 ttgaggtaat ccgcaaattg ctggatacac tcaaagcctc gttgatggaa gaaaatcaga
    11281 tggagctggc gttacgcacc agcgaagctt tattacaatt caaccctgaa gatccctatg
    11341 aaattcgcga tcgcgggttg atttatgcgc aactggattg cgaacacgtt gcgttgaacg
    11401 atttaagtta tttcgttgaa cagtgtccgg aagacccgat cagcgaaatg atccgtgcgc
    11461 aaataaataa catcgcgcat aaacatattg tgctgcatta attaatcgac attttactca
    11521 agattaaggc gatcctatga aacaaaaagt ggttagcatt ggcgacatca acgtagcaaa
    11581 tgacctgccg ttcgtactgt ttggcggtat gaacgtgctg gaatctcgcg atctggcgat
    11641 gcgcatttgc gagcactacg taactgtgac ccagaaactg ggtatccctt acgtgttcaa
    11701 agcctctttt gacaaagcca accgctcctc catccactct tatcgtggac cgggcctgga
    11761 agaagggatg aaaatcttcc aagagttgaa gcagactttt ggcgtgaaaa ttatcaccga
    11821 cgttcacgaa ccaagtcagg cacagcccgt tgctgatgtc gtggatgtga ttcagttgcc
    11881 ggcgtttctt gctcgccaga ctgacctggt tgaagccatg gcgaaaaccg gtgcggtaat
    11941 taacgtcaag aaaccacagt ttgtcagccc gggacagatg ggtaatatcg ttgataaatt
    12001 caaagaaggc ggcaacgaaa aagtgattct ttgcgatcgt ggtgctaact tcggctatga
    12061 caacctggtt gtcgatatgc tgggcttcag cattatgaag aaagtgtctg gtaactcgcc
    12121 ggtgattttc gacgtgaccc acgcactgca atgccgcgat ccgtttggcg cagcttccgg
    12181 tggtcgtcgt gctcaggtgg ctgagctggc acgagccggt atggcggtag gtctggcggg
    12241 gctgtttatt gaagcgcatc cggatccgga acatgcgaaa tgtgatggtc catccgcgct
    12301 gccgctggct aaactggaac cgttcctcaa gcagatgaaa gcgattgatg atctggtgaa
    12361 aggtttcgaa gaactggata ccagcaagta atcttttttg cttgaaaaat aaagtcttag
    12421 cgttctgcgt taagactttt ttcatgggtg ccagatacaa aaaaggccgc aggctgttac
    12481 ccctgcggcc ggtttcgggc gcatattgcc atcacggcag cctgacgccc gttttcacct
    12541 tacttccggt tacgccacca gccgacaatc gctgcggtaa taattcccgc caggatcggt
    12601 gctgccaggt cgtgccagaa aatcatggca aactgcgcga gcgtcatata gccgccttgt
    12661 tgtaatgata acattttgcg gctattcttg aattgttctg gttcaagatt agcccccgtt
    12721 ctattgtcag gttaaacctc tcaacgtgcg ggggttttct ctttccagca accaatgcca
    12781 ccagggataa agcccccgca acattgcgcc tcaccggata acgccggctt gatgtggata
    12841 ctacg
//
LOCUS       DADMJB010000123        12734 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.123, whole genome shotgun sequence.
ACCESSION   DADMJB010000123 DADMJB010000000
VERSION     DADMJB010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12734)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12734)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12734
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.123"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..467
                     /locus_tag="JN078_003008"
     CDS             <1..467
                     /locus_tag="JN078_003008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016233146.1"
                     /note="type IV secretion system coupling protein; similar
                     to F plasmid TraD; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="HAY9042137.1"
                     /translation="ERPKVAPEFIPRDINPEMENRLSAVLAAREAEGRQMASLFEPDV
                     PEVVSGEDVTQAEQPQQPVSPVINDKKSDSGVNVPAGGIEQELKMKPEEEMEQQLPPG
                     ISESGEVVDMAAYEAWQQENHPDTWQQMQRREEVNINVHRERGEDVEPGDDF"
     gene            complement(476..874)
                     /gene="vapC"
                     /locus_tag="JN078_003009"
     CDS             complement(476..874)
                     /gene="vapC"
                     /locus_tag="JN078_003009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(fMet)-specific endonuclease VapC"
                     /protein_id="HAY9042138.1"
                     /translation="MLKFMLDTNICIFTIKNKPASVRERFNLNQGRMCISSVTPMELI
                     YGAEKSQMPERNLAVIEGFVSRIDVLDYDAAAATHTGQIRAELARQGRPVGPFDQMIA
                     GHARSRGLIIVTNNTREFERVGGLRTEDWS"
     gene            complement(874..1101)
                     /gene="vapB"
                     /locus_tag="JN078_003010"
     CDS             complement(874..1101)
                     /gene="vapB"
                     /locus_tag="JN078_003010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system antitoxin VapB"
                     /protein_id="HAY9042139.1"
                     /translation="METTVFLSNRSQAVRLPKAVALPENVKRVEVIAVGRTRIITPAG
                     ETWDEWFDGHSVSADFMDNREQPGMQERESF"
     gene            1183..1602
                     /locus_tag="JN078_003011"
     CDS             1183..1602
                     /locus_tag="JN078_003011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005030230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative relaxase"
                     /protein_id="HAY9042140.1"
                     /translation="MMSIAQVRSAGSAGNYYTNKDNYYVLGSMGERWAGQGAEQLGLQ
                     GSVDKDVFTRLLEGRLPDGADLSRMQDGSNRHRPGYDLTFSAPKSVSMMAMLGGDKRL
                     IEAHNQAVDFAVRHHPCGGTGLHTDDDGRTVRNGADR"
     gene            1589..6460
                     /gene="traI"
                     /locus_tag="JN078_003012"
     CDS             1589..6460
                     /gene="traI"
                     /locus_tag="JN078_003012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005079803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative transfer relaxase/helicase TraI"
                     /protein_id="HAY9042141.1"
                     /translation="MLTGNLVMALFNHDTSRDQEPQLHTHAVVTNVTQHNGEWKTLSS
                     DKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVPVEAFS
                     GRSQTIREAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDIRAYRD
                     AAEQRAYTRTQTPGPASQDGPDVQQAVTQAIAGLSERKVQFMYTDLLARTVGILPPEN
                     GVIERARAGIDEAISREQLIPLDREKGLFTSGIHMLDELSVRALSRDIMKQNRVTVHP
                     EKSVPRTAGYSYAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIA
                     ADRRSQMNLKQDERLSGELITGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGA
                     ARHNVQVLITDSGQRTGTGSALMAMKDAGVNTYRWQGGEQRPATIISEPDRYVRYARL
                     AGDFAASVKAGEESVAQVSGVREQAILTQAIRSELKTQGVLGHPEVTMTALSPVWLDS
                     RSRYLRDMYRPGMVMEQWNPETRSHDRYVTERVTAQSHSLTLRNAQGETQVVRISSLD
                     SSWSLFRPEKMPVADGERLRVTGKIPGLRVSGGDRLQVASVSEDAMTVVVPGRAEPAT
                     LPVSDSPFTALKLENGWVETPGHSVSDSATVFASVTQMAMDNATLNGLARSGRDVRLY
                     SSLDETRTAEKLARHPSFTVVSEQIKARAGETLLETAISLQKAGLHTPAQQAIHLALP
                     VLESKNLAFSMVDLLTEAKSFAAEGTGFADLGGEINAQIKRGDLLYVDVAKGYGTGLL
                     VSRASYEAEKSILRHILEGKEAVTPLMERVPGELMEKLTSGQRAAARMILETSDRFTV
                     VQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFL
                     HDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQA
                     IAPGQPFRLQQTRSAADVVIMKEIVRQTPELREAVYSLINRDVERALSGLERVKPSQV
                     PRLEGAWAPEHSVTEFSHSQEAKLAEAQQKAMLKGEAFPDVPMTLYAAIVRDYTGRTP
                     EAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGQVQVMVPVLNTANIRDGELRRLST
                     WENNPDALALVDNVYHRIAGISKDDGLITLQDAEGNTRLISPREAVAEGVTLYTPDTI
                     RVGTGDRIRFTKSDRERGYVANSVWTVTAVSGDSVTLSDGQQTRVIRPGQERAEQHID
                     LAYAITAHGAQGASETFAIALEGTEGNRKLMAGFESAYVALSRMKQHVQVYTDNRQGW
                     TDAINNAVQKGTAHDVFEPKPDREVMNAERLFSTARELRDVAAGRAVLRQAGLAGGDS
                     PARFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSGDA
                     QFVALQGSRNGESLLADNMQDGVRIARDNPDSGVVVRIAGEGRPWNPGAITGGRVWGD
                     IPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPDGKTE
                     QAVREIAGQERDRAAITEREAALPESVLREPQRVREAVREVARENLLQERLQQMERDM
                     VRDLQKEKTPGGD"
     gene            6480..7226
                     /gene="traX"
                     /locus_tag="JN078_003013"
     CDS             6480..7226
                     /gene="traX"
                     /locus_tag="JN078_003013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858383.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system pilin
                     acetylase TraX"
                     /protein_id="HAY9042142.1"
                     /translation="MTTDNTNTTRNDSLAARTDTWLQSFLVWSPGQRDIIKTVALVLM
                     VLDHINLIFQLKQEWMFLAGRGAFPLFALVWGLNLSRHAHIRQPAINRLWGWGIIAQF
                     AYYLAGFPWYEGNILFAFAVAAQVLTWCETRSGWRTAAAILLMALWGPLSGTSYGIAG
                     LLMLAVSNRLYRAEDRAERLALVACLLAVIPALNLATSDAAAVAGLVMTVLTVGLVLC
                     AGKSLPRFWPGDFFPTFYACHLAVLGVLAL"
     gene            7281..7841
                     /locus_tag="JN078_003014"
     CDS             7281..7841
                     /locus_tag="JN078_003014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fertility inhibition protein FinO"
                     /protein_id="HAY9042143.1"
                     /translation="MTEQKRPVLTLKRKTEGTATVRSRKTIINVTTPPKWKVKKQKLA
                     EKAAREAELAAKKAQARQALSIYLNLPTLDEAVNTLKPWWPGLFDGDTPRLLACGIRD
                     VLLEDVAQRNIPLSHKKLRRALKAITRSESYLCAMKAGACRYDTEGYVTEHISQEEEA
                     YAGARLAKIRRQNRIKAELQAVLDEK"
     gene            7972..8184
                     /locus_tag="JN078_003015"
     CDS             7972..8184
                     /locus_tag="JN078_003015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_958725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HAY9042144.1"
                     /translation="MNGFRNSSRNGQVWRYQRAGGRAVILEVSGRWMEAAEAWRRAAC
                     VAPRTDWQQFARKRAEHCHRRCRGRG"
     gene            8368..8889
                     /locus_tag="JN078_003016"
     CDS             8368..8889
                     /locus_tag="JN078_003016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001302180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HAY9042145.1"
                     /translation="MLHYSGGLKYRCHLSDMENNMRKYIPLVLFIFSWPVLSADIHGR
                     VVRVLDGDTIEVMDSLKAVRIRLVNIDAPEKKQDYGRWSTDMMKSLVAGKTVTVTYFQ
                     RDRYGRILGQVYAPDGMNINQFMVRAGAAWVYEQYNTDPVLPVLQNEARQQKRGLWSD
                     ADPVPPWIWRHRK"
     gene            8935..9144
                     /gene="hha"
                     /locus_tag="JN078_003017"
     CDS             8935..9144
                     /gene="hha"
                     /locus_tag="JN078_003017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_958726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin expression modulator Hha"
                     /protein_id="HAY9042146.1"
                     /translation="MAKTKQEWLYQLRRCSSVNTLEKIIHKNRDSLSNSERESFNSAA
                     DHRLAELITGKLYDRIPKEIWKYVR"
     gene            9183..9773
                     /locus_tag="JN078_003018"
     CDS             9183..9773
                     /locus_tag="JN078_003018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2726 domain-containing protein"
                     /protein_id="HAY9042147.1"
                     /translation="MKLIIFILIVLIIAALLIRIILRSVNQHSPLLMQLHAAGIRTGD
                     AERILSSGEYWQRQTTLLTEREVSFMKGLFRIVDMTRWYLCPQVRVADIVQLNGNIRP
                     RSRQWWQLFRMVSQWHVDVVIVELRSFSIVAAVELDDASHLRPERRRRDILLEEVLRQ
                     AGIPLLRSHDARKLLQMTGEWLNTTGADQQSPEHRS"
     gene            10013..10273
                     /locus_tag="JN078_003019"
     CDS             10013..10273
                     /locus_tag="JN078_003019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication regulatory protein RepA"
                     /protein_id="HAY9042148.1"
                     /translation="MSQTENAVTSSLSQKRFVRRGKPMTDSEKQMAAVARKRLTHKEI
                     KVFVKNPLKDLMVEYCEREGITQAQFVEKIIKDELQRLDILK"
     gene            10497..10571
                     /locus_tag="JN078_003020"
     CDS             10497..10571
                     /locus_tag="JN078_003020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RepA leader peptide Tap"
                     /protein_id="HAY9042149.1"
                     /translation="MPGKVQDFFLCSLLLRIVSAGWCD"
     gene            10564..11421
                     /gene="repA"
                     /locus_tag="JN078_003021"
     CDS             10564..11421
                     /gene="repA"
                     /locus_tag="JN078_003021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858393.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="incFII family plasmid replication initiator
                     RepA"
                     /protein_id="HAY9042150.1"
                     /translation="MTDLQQTYYRQVKNPNPVFTPREGARTLPFCGKLMEKAVGFTSR
                     FDFAIHVAHARSLGLRRRMPPVLRRRAIDALLQGLCFHYDPLANRVQCSITTLAIECG
                     LATESAAGKLSITRATRALTFLAELGLITYQTEYDPLIGCYIPTDITFTSALFAALDV
                     SEEAVAAARRSRVEWENRQRKKQGLDTLGMDELMAKAWRFVRERFRSYQTELKSRGMK
                     RARARRDADRQRQDIVTLVKRQLTREISEGRFTASREAVKREVERRVKERMILSRNRN
                     YSRLATASP"
     gene            complement(12473..>12734)
                     /locus_tag="JN078_003022"
     CDS             complement(12473..>12734)
                     /locus_tag="JN078_003022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000484486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HAY9042151.1"
                     /translation="QAAAFLGVVPVEKYSGTSVRGCPKLSKIGPPEIRAKLYLASLCG
                     LRFNPLMKAMYERLCLRGKAKMCAIGALMRKLVHWCYGVLKT"
BASE COUNT         3087 a         3211 c         3779 g         2657 t
ORIGIN      
        1 aggaacgacc gaaggtcgct ccggagttta ttccgcgtga catcaacccg gaaatggaga
       61 accgtctgag tgccgtactt gccgcaaggg aagcagaagg tcgtcagatg gccagcctct
      121 tcgaaccgga tgtcccggag gttgtttccg gagaagacgt gactcaggct gaacagccgc
      181 aacagccggt gtctcctgtc atcaacgata agaagtcaga ttcaggtgtg aatgttccgg
      241 caggggggat cgagcaggag ctgaaaatga aaccggaaga agagatggaa cagcaactgc
      301 cacccgggat cagtgaatcc ggtgaagtgg tggatatggc cgcttatgag gcatggcagc
      361 aggaaaatca tccggacacc tggcagcaga tgcagcgtcg tgaagaggtg aacatcaatg
      421 tgcaccggga acgcggggag gatgttgagc cgggagatga tttctgatga acaggtcagc
      481 tccagtcttc agttctcagg ccgcccacac gttcaaattc ccgggtgtta ttagtcacaa
      541 taatcagccc ccgactgcgg gcatgacctg cgatcatttg atcaaatggc ccgacagggc
      601 gtccctgacg ggcaagttct gctcttatct ggccggtgtg tgtggctgca gcagcgtcgt
      661 aatccagaac atcaatgcgg gaaacaaatc cctcgatcac agcgagatta cgttcaggca
      721 tctggctttt ttctgcacca tatatcagct ccatcggggt gaccgaactg atacacattc
      781 tcccctggtt caggttaaaa cgctccctga cgctggcggg tttgttcttt atcgtaaaaa
      841 tgcagatgtt ggtatcgagc ataaacttca gcatcagaat gactcccttt cctgcatgcc
      901 gggctgttcc ctgttatcca taaaatcggc gctgacgctg tgtccgtcga accattcgtc
      961 ccatgtctct ccggctggcg taatgattct ggttcgtccg acagcaatca cttcaacgcg
     1021 ttttacgttt tccggcaatg caaccgcttt tggcagtctg accgcctggc tgcggttgct
     1081 gagaaatacg gtggtttcca ttatttgcct ccttatgtgg atatgtcttg tgtatatcca
     1141 ttgtgggatt gatgccggga tatgtcaaag ggatatacgt ttatgatgag tatcgcgcag
     1201 gtcagatcgg ccggaagtgc cggtaattat tataccaaca aggataatta ctatgtgctg
     1261 ggcagcatgg gagaacgctg ggccggccag ggggctgaac aactggggct gcagggcagt
     1321 gtcgataagg atgtctttac ccgccttctg gagggcaggc tgccggacgg ggcggattta
     1381 agccgcatgc aggatggcag taacaggcat cgtcccggct acgacctgac cttctccgct
     1441 cccaaaagtg tctccatgat ggccatgctc gggggggaca aacgtcttat tgaagcacat
     1501 aaccaggccg tggattttgc tgtccgtcat cacccgtgtg gaggcactgg cctccacacg
     1561 gatgatgacg gacggacagt cagaaacggt gctgaccggt aatctggtga tggcactgtt
     1621 taaccacgac accagtcgcg atcaggaacc acagttacac acgcatgcgg tggtgactaa
     1681 tgttacgcag cataacggcg aatggaagac actgagcagt gacaaagtgg ggaaaacggg
     1741 gttcattgag aatgtgtacg ctaatcagat tgcctttggc aggctctacc gggaaaaact
     1801 gaaagagcag gttgaggcgc tgggctatga aactgaagtg gtcggtaagc acggtatgtg
     1861 ggaaatgccg ggtgtaccgg tggaggcctt ttccggacgc tcacagacta tccgggaggc
     1921 cgtcggggaa gacgcctcgc tgaaatcccg ggatgtggcg gcgctggata cgcgtaaatc
     1981 caaacagcac gtcgatcctg aagtcagaat ggccgagtgg atgcagacgc tgaaggaaac
     2041 cgggttcgac atccgggcat atcgtgacgc agcggaacaa cgggcatata cccgcacgca
     2101 gacacccgga cccgcttcac aggacgggcc ggatgtgcag caggcggtga cacaggccat
     2161 tgccggatta agtgaacgca aagtgcagtt tatgtatacg gacctgctgg ccaggacggt
     2221 cggcatactg ccgccggaaa atggtgtgat tgaacgggca cgcgccggta tcgatgaggc
     2281 catcagccgt gagcagctta tccccctcga tcgtgagaag gggctgttca cgtccgggat
     2341 tcatatgctc gatgagctgt cagtccgggc actcagtcgt gacatcatga aacagaaccg
     2401 ggtgaccgta catccggaga aaagtgtccc ccggacggcc ggttacagct atgccgtcag
     2461 tgttctggca caggaccgtc cgtcgctggc cattgtgtcc gggcagggcg gtgcagccgg
     2521 gcagcgtgag cgggtggctg aactggtcat gatggcccgg gagcaggggc gggaggtgca
     2581 gattatcgct gctgaccgtc gctcgcagat gaacctgaag caggatgaac ggctgtccgg
     2641 tgaactgata accggacgtc gtcagttgct ggaaggcatg gccttcacgc cgggcagtac
     2701 cgttatcgtc gaccagggcg aaaaactctc cctgaaagag acgttaaccc tgctggatgg
     2761 tgccgcacgt cataacgtac aggtcctgat aactgacagc gggcagcgaa ccggtacagg
     2821 cagtgcactg atggccatga aggatgccgg ggtgaacaca tatcgctggc aggggggaga
     2881 acagcgaccg gccaccatca tcagtgaacc ggaccgttat gtccgctatg cccggctggc
     2941 cggagatttt gcggccagcg tgaaagccgg agaagagagc gtggcacagg tcagcggagt
     3001 acgggaacag gccatactga cacaggccat tcgcagtgag ctgaaaacac agggcgtgct
     3061 cggacacccg gaggtaacca tgaccgccct gtcaccggtc tggctggaca gccggagccg
     3121 ttatctgcgg gatatgtacc gcccgggaat ggtgatggag cagtggaacc cggagacacg
     3181 cagtcatgac cgctatgtga cagaacgtgt gacggcgcag agtcacagcc tgaccctgcg
     3241 gaatgcgcag ggcgaaacgc aggtggtgcg tatttcttcc ctggacagca gctggtcgct
     3301 gttccggccg gaaaaaatgc cggtggcaga cggtgagcgt ctgagggtga cagggaaaat
     3361 tcccggactc cgcgtctccg gcggtgaccg cctgcaggtg gcatccgtca gtgaagatgc
     3421 gatgacggtt gttgtgccgg gacgggctga accggccacc ctgcctgtga gcgattcacc
     3481 gttcacggca ctgaagctgg agaacggctg ggtggaaacg cccgggcatt ccgtcagcga
     3541 cagtgcgacg gtttttgcct ccgtcacaca gatggcaatg gacaatgcca ccctgaacgg
     3601 tctggcccgc agtggtcgtg atgtccggct gtattcctca ctggatgaaa cccgtactgc
     3661 ggaaaaactt gcccgccatc cttcctttac ggtggtttct gagcagataa aggcgcgtgc
     3721 cggtgagaca ttgctggaaa ccgctatcag tctgcagaaa gccgggcttc acacgccggc
     3781 acagcaggcc attcatctgg cccttcctgt gctggaaagt aaaaacctgg ccttcagcat
     3841 ggtggacctg ctgacagagg cgaagtcgtt tgctgcagaa ggaaccggtt ttgctgacct
     3901 gggaggggaa atcaatgcgc agataaaacg gggtgattta ctgtatgtgg atgtggcaaa
     3961 aggctatggc acaggcctgc tggtttcccg tgcgtcgtat gaggcagaaa agagcattct
     4021 tcgccatatt ctcgaaggta aggaggcggt cacgccgctg atggagagag tacctggcga
     4081 actcatggag aaactgacat caggacagcg cgccgccgcc cgtatgatac tggaaacgtc
     4141 cgaccgtttc acggtggtgc agggctatgc cggtgtgggt aagaccacac agttccgggc
     4201 ggtgatgtca gccgtgaaca tgctgccgga gagtgaacgt ccccgtgtcg tggggctggg
     4261 gcccacacac cgtgcggtcg gggagatgcg cagcgccggc gtggatgcac agacactggc
     4321 gtcctttctg catgacacgc agctgcagca gcgcagcgga gaaacgccgg atttcagcaa
     4381 cacgctgttc cttctcgatg agagctctat ggtgggcaat accgacatgg cacgggcata
     4441 cgccctgatt gcggccggtg gcggtcgggc tgtggccagc ggtgacacgg accagctgca
     4501 ggccatcgcg cccggtcagc ctttccgtct ccagcagacg cgcagtgctg ccgatgtggt
     4561 catcatgaag gagattgtgc gtcagacgcc ggaactgcgg gaggcggtat acagcctgat
     4621 taaccgggat gtggaaaggg cgctgtccgg gcttgagcgt gtgaaaccgt ctcaggtgcc
     4681 acgtctggag ggcgcatggg caccggagca ctccgtgacg gagttcagtc acagccagga
     4741 agcgaaactg gcagaagcgc agcagaaggc gatgctgaaa ggcgaggctt ttccggatgt
     4801 ccccatgaca ctgtatgcag ccattgtccg cgactatacc ggcaggacac cggaagcacg
     4861 ggagcagacg ctgattgtca cgcacctgaa tgaggaccgg cgcgtactga acagcatgat
     4921 tcatgatgca cgggaaaagg ccggagaact ggggcaggtg caggtcatgg tgcctgtcct
     4981 gaacacagcg aatatacgcg acggggagct gcgtcgtctc tccacctggg agaataaccc
     5041 ggatgccctt gccctggtgg ataatgtgta tcaccggatt gccggtatca gcaaggatga
     5101 cgggctgata accctgcagg atgcggaagg taacacgcgg ctgatttcgc cccgggaggc
     5161 ggtggctgaa ggcgtcacgc tgtacacccc ggacaccatc cgggtgggga ccggtgacag
     5221 gatacgcttc acgaagagtg accgggagcg cggttatgtg gccaacagcg tctggacggt
     5281 gacagcggtt tccggtgaca gtgtcacact ttctgacggt cagcagaccc gtgtgattcg
     5341 ccccggtcag gagcgggcag agcaacatat tgacctggcc tatgccatca ccgcccacgg
     5401 tgcacagggg gcgagtgaaa cctttgccat cgcgcttgaa ggcacggaag gtaaccggaa
     5461 actgatggcc ggctttgagt cagcctacgt ggccctgtcg cgtatgaagc agcatgtgca
     5521 ggtgtacacc gataaccgtc agggctggac ggatgccatc aacaatgccg tacagaaagg
     5581 aactgcccac gatgtgtttg agccgaaacc ggaccgggag gtcatgaatg cagagcggct
     5641 gttcagtacg gcgcgggagc tgcgggacgt ggcggcaggc cgtgccgttc tccgtcaggc
     5701 ggggctggcc gggggagaca gtcctgcacg gtttattgct ccgggacgta aatatccgca
     5761 accgtatgtg gcactgccgg cgtttgaccg taacggcaag tccgccggta tctggctgaa
     5821 cccgctgacc acggatgacg gaaacgggct gcggggattc agcggtgaag gtcgggtaaa
     5881 aggcagcggg gatgcgcagt tcgtggctct gcagggcagc cgtaacggag aaagcctgct
     5941 ggctgataat atgcaggatg gcgtccggat tgcccgtgat aatcctgaca gtggtgtggt
     6001 ggtaagaatc gccggtgaag gccgtccgtg gaatcccggt gccatcaccg gtggccgcgt
     6061 gtggggggat atcccggaca acagcgtcca gccgggagcc ggaaatggcg aaccggtcac
     6121 ggcagaggta ctggcacagc ggcaggctga agaggccatc cgccgtgaaa cggaacgtcg
     6181 cgcagatgaa attgtccgta aaatggcaga gaacaaacct gacctgccgg acggcaaaac
     6241 agagcaggct gtcagggaaa ttgccgggca ggagcgtgac cgggctgcca taactgaacg
     6301 ggaagccgcg ctgccggaga gtgtactgcg tgaaccacaa cgggtgcggg aagcggtccg
     6361 ggaagttgcc cgggaaaatt tgctgcagga gcgtctgcag cagatggagc gggatatggt
     6421 tcgtgacctg cagaaagaga aaaccccggg cggagactga tacaggaaga caaacactga
     6481 tgacaacgga taacacgaac acgacacgta acgattcact ggctgcacgg accgatacct
     6541 ggttgcagtc atttctggtc tggtcacccg gacagcggga tatcatcaaa acggtggcac
     6601 tggtgctgat ggtactggac cacatcaatc tgatattcca gctgaagcag gaatggatgt
     6661 ttctggccgg gcgaggagcc tttccgcttt ttgccctggt gtgggggctg aatctgtccc
     6721 gtcatgcgca tatccggcaa ccggccatta accggctgtg gggatgggga attattgccc
     6781 agttcgcata ttatctggca ggctttccct ggtatgaggg gaatatcctg tttgcctttg
     6841 cagtggcggc acaggtgctg acgtggtgtg aaacgcgcag tgggtggcgt acagcagcgg
     6901 ccatactcct gatggccctg tgggggcctt tgtccggcac cagttacggt attgccgggt
     6961 tgctgatgct ggcagtcagc aaccggctgt accgggcgga agacagagcg gaacgtctgg
     7021 cgctggtcgc ctgcctgctg gctgttattc cggcgcttaa ccttgccacc agtgatgcag
     7081 cggcggtggc cggtcttgtg atgacggtgc tgaccgttgg tctggtgttg tgtgccggaa
     7141 aatcattacc ccgtttctgg cccggagact ttttcccgac gttctatgcc tgtcatctgg
     7201 ctgtgctggg cgttctggcg ctgtgacggg tgtggtatct ttggccgcaa gaggatgatt
     7261 cgtcagaggc agaacacagc atgacagagc agaagcgacc ggtactgaca ctgaagcgga
     7321 agacagaggg aacagcgact gtccgcagcc ggaaaaccat catcaatgtc accacgccac
     7381 caaagtggaa ggtgaaaaag cagaagctgg ccgagaaagc ggcccgtgaa gcagagctgg
     7441 cggcaaaaaa agcgcaggcc agacaggcgc tgtccattta tctgaacctg cccacgctgg
     7501 atgaggctgt gaataccctg aagccctggt ggccgggatt atttgacggt gacacgcccc
     7561 ggcttctggc ctgcggtatc cgggacgtgt tactggaaga cgtggcgcag cggaatatcc
     7621 cgctctcgca taaaaaactg cgcagggcgc tgaaggccat cacccgttca gaaagctatc
     7681 tgtgtgccat gaaagccggt gcctgccggt atgacacgga agggtatgtg acggagcata
     7741 tttctcagga ggaggaagcg tatgcgggag cgcgtctggc gaaaattcgt cgccagaacc
     7801 ggataaaggc agaacttcag gccgtgcttg atgagaaata aaaaaagcct cccccagaga
     7861 gaggaggcag ggaaataagg cttaaaagga aataacttcc gcttccgaaa ggaagccagt
     7921 ccactgaatt atttatcaca ataatactga caactaaagg gggacaagaa aatgaatgga
     7981 ttcagaaaca gttcacggaa cggccaggtc tggcgttacc agcgtgccgg cgggcgggcc
     8041 gttattctgg aagtcagtgg acgctggatg gaagcggcag aagcatggcg acgggctgcc
     8101 tgtgttgcgc ctaggacaga ctggcagcag tttgcccgga aaagggctga acactgccac
     8161 cggcgctgcc ggggaagggg gtaacgaaaa aagcagcctt cattactcca ggagtcagaa
     8221 ggctgaaagg agtttatgag atttgcttct taatatccgg tcgggcagta tgaccggaca
     8281 gttctgagta gcacagagtc ttttccgcat taagtcgatt ttttatattt tgtgattaat
     8341 ttcacaaaat aaggtgttat tcaatgtgtg ctgcactatt caggggggct gaaatacagg
     8401 tgccatttat ctgatatgga gaataacatg aggaaatata ttccactggt attatttatc
     8461 ttttcatggc cggtattgtc tgcagatatt catggacggg ttgttcgtgt actggacggt
     8521 gataccatcg aggtcatgga ctcactgaag gcggtgcgga tcaggctggt aaatattgat
     8581 gcaccggaaa agaaacagga ttatggccgg tggtcaacag acatgatgaa atcactggtt
     8641 gcaggaaaaa cggttaccgt cacatatttt cagcgagatc gttatggtcg tattctcggg
     8701 caggtttatg caccagacgg aatgaatatt aatcagttta tggtccgggc cggggctgcc
     8761 tgggtatatg agcagtacaa cacagatccc gtgctacctg tccttcagaa cgaagccaga
     8821 caacaaaaac gtgggctctg gtcagatgct gatccggttc ccccctggat atggaggcac
     8881 cgtaaataaa gcgatggcaa tcctatcatt catctgttct cagcgggaat aaaaatggca
     8941 aaaacaaaac aggaatggct gtatcagtta cggcgatgtt catcagtcaa tacgctggaa
     9001 aaaattattc ataaaaacag agacagttta tcaaacagtg aacgtgaatc atttaattca
     9061 gcagcagacc accggctagc ggaattaatc accggaaagt tatatgacag gataccaaaa
     9121 gagatatgga aatatgtaag gtaataattc agcaataatt aattgccagg agcagataaa
     9181 taatgaagtt gattattttt attctcattg ttctgattat tgcagcgcta cttatccgga
     9241 ttatcctcag aagtgtaaat cagcattctc ctttgctgat gcaattgcat gcggcaggta
     9301 tacggaccgg tgatgcagag cgaatactgt ccagcggtga atactggcaa cgtcagacga
     9361 cgctgctgac agaaagggaa gtcagtttta tgaaaggact gttcagaatt gtggatatga
     9421 cgcggtggta tctgtgtccg caggtacggg tcgcggatat cgtccagctg aacgggaata
     9481 tccggccacg atcacgccag tggtggcagt tattcaggat ggtgtctcag tggcatgttg
     9541 atgtggttat cgttgagctg cgttcgttca gtattgttgc agcagtagag ctggatgatg
     9601 ccagccattt acgaccggaa cgcagacgcc gggatattct tctggaagag gttctgaggc
     9661 aggctggtat tccgttgctc agaagccacg atgccagaaa actgctgcag atgaccggag
     9721 aatggctgaa tacaacaggg gctgatcagc agtcaccgga acatcgtagc tgacgccttc
     9781 acgttgctca gttgtccaac cccggaaacg ggaaaaagca agttttcctc gctcccggcg
     9841 tttccataac tgaaaaccat actatttcac agtttaaatc acattaaacg acagtaatcc
     9901 ccgttgattt gtgcgccaac acagatcttc gccacaattc tcaagtcgct gatttcaaaa
     9961 aactgtagta tcctctgcga aacgatccct gtttgagtat tgaggaggcg agatgtcgca
    10021 gacagaaaat gcagtgactt cctcattgag tcaaaagcgg tttgtgcgca gaggtaagcc
    10081 tatgactgac tctgagaaac aaatggccgc tgttgcaaga aaacgtctta cacacaaaga
    10141 gataaaagtt tttgtcaaaa atcctctgaa agatctcatg gttgagtact gcgagagaga
    10201 ggggataaca caggctcagt tcgttgagaa aatcatcaaa gatgaactgc agagactgga
    10261 tatactaaag taaagacttt actttgtggc gtagcatgct agattactga tcgtttaagg
    10321 aattttatgg ctggccacgc cataaggtgg cagggaactg gttctgatgt agatgtacag
    10381 gagccagaaa agcaaaaacc ccgataatct tctttaactt tggcgagtca gaaagattac
    10441 cggggcccac ttaaaccgta tagccaacaa tcaagctatg cggggagtat agttatatgc
    10501 ccggaaaagt tcaagacttc tttctgtgct cgctccttct gcgcattgta agtgcaggat
    10561 ggtgtgactg atcttcaaca aacttattac cgccaggtaa agaacccgaa tccggtgttc
    10621 acaccccgtg aaggtgcccg gacgcttccg ttctgcggga aactgatgga aaaggcggtg
    10681 ggcttcacct cccgttttga tttcgccatt catgtggcac atgcccgttc gcttggtctg
    10741 cgtcggcgca tgccaccggt actacgtcgc cgggccattg atgcgctgct gcaggggctg
    10801 tgttttcact atgacccact ggccaaccgc gtccagtgtt ccatcaccac gctggccatt
    10861 gagtgcggac tggcgacgga gtctgctgcc ggaaaactct ccatcacccg ggccacccgg
    10921 gccctgacgt tccttgcaga gctgggactg attacctacc agacggaata tgacccgctt
    10981 atcgggtgct acattccgac cgatatcacg ttcacatctg cactgtttgc tgccctcgat
    11041 gtatcagagg aggcagtggc cgccgcgcgc cgcagtcgtg tggaatggga aaacagacag
    11101 cgcaaaaagc aggggctgga taccctgggt atggatgaac tgatggcgaa agcctggcgt
    11161 tttgttcgtg agcgtttccg cagttaccag acagagctta agtcccgtgg aatgaagcgt
    11221 gcccgtgcgc gtcgtgatgc ggacaggcag cgtcaggata ttgtcaccct ggtgaaacgg
    11281 caactgacgc gtgaaatctc ggaagggcgc ttcactgcca gtcgtgaggc ggtaaaacgt
    11341 gaagtggagc gtcgtgtgaa ggagcgcatg attctgtcac gtaaccgtaa ttacagccgg
    11401 ctggccacag cttccccctg aaagtgacct cctcagaata atccggcacg cgccggaggc
    11461 attcgcacgc ctgaagcccg ccagtgcaca aaaaatcagc gctacataca aaaaacaacc
    11521 tcatcatcca ccttctggtg catccggtcc cccctgtttt tgatacaaaa cacgcctcac
    11581 agacggggaa ttttgcttat ccacattaaa ctgcaaggga cttcaccata aggttacaac
    11641 cgttcacctc ataaagcgcc agccgtcagc cctacagggt gcaatgtatc ttttaaacac
    11701 ctgtttatat ctcctttaaa ctacttaatt acattcattt aaaaagaaaa cctgttcact
    11761 gcctgtctgt ggacagacag atatgcacct cccaccacaa acggcgggcc ccgaccgaag
    11821 ccggtttagt tacaacatgc aaacataaac ccctaaaaaa cccaagtccg acgcagaact
    11881 gaaaccacaa agcccctccc tcataactga aaagcggccc cgccccggcc cgaagggccg
    11941 gaacagagtc gcttttaatt atgaatgttg taactatatt atcatcgctg tcagtcctct
    12001 ggctggacgt atcgagtaca cgctcgtaag cggccctcac ggccctcacg gcccgctaac
    12061 gcggagatac gccccgactg cgggtaaacc cttgtcgggc tccgaccgcg cacagaagct
    12121 ctgtcatagc tgaaaacggg tatggcttgg cagctaccat gttctgtcaa gaaaaatcgc
    12181 ttgaactccg acgtacagcc ccctaagtac tgccagcaag ctgtcagcac taagtccccg
    12241 atacagcgcg gcatagccgc gctaacgggg ttaaaagggc ttacctatac ttcatcatcg
    12301 ctgaaagccc gcatggcctc gcagggcaga gatgggatag gtgaaaccta tcaatacgta
    12361 ccggcttacg ccgggcttcg gcggtgttac tcctgtacca tatgtaacta catcatgccg
    12421 ccttacatgc gctacgcgca tatgaagaca aatagcccac atcaaacggt ttttaggtct
    12481 tcagtacgcc atagcaccag tgcacgagtt ttctcatcag cgcaccaatg gcacacattt
    12541 tggccttacc tctcaggcat aatcgctcat acatcgcttt catcaatggg ttaaatctca
    12601 gaccacacaa cgaagccaga tacagtttcg cccggatttc cggcggacca atttttgaca
    12661 gtttcggaca ccctctgacc gaggtgccgg aatatttttc aacgggaacg acacctaaaa
    12721 atgcagccgc ctgt
//
LOCUS       DADMJB010000124        12658 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.124, whole genome shotgun sequence.
ACCESSION   DADMJB010000124 DADMJB010000000
VERSION     DADMJB010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12658)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12658)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12658
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.124"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(4..324)
                     /gene="chbB"
                     /locus_tag="JN078_003023"
     CDS             complement(4..324)
                     /gene="chbB"
                     /locus_tag="JN078_003023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N,N'-diacetylchitobiose transporter subunit
                     IIB"
                     /protein_id="HAY9042152.1"
                     /translation="MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLA
                     GEKGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVIDSLLYGKVDGLGVLKAAVAAIKK
                     AAAN"
     gene            complement(622..960)
                     /gene="osmE"
                     /locus_tag="JN078_003024"
     CDS             complement(622..960)
                     /gene="osmE"
                     /locus_tag="JN078_003024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotically-inducible lipoprotein OsmE"
                     /protein_id="HAY9042153.1"
                     /translation="MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMS
                     RAQVAQIAGKPSSEVSMIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCA
                     EYDTDPQAAK"
     gene            1162..1989
                     /gene="nadE"
                     /locus_tag="JN078_003025"
     CDS             1162..1989
                     /gene="nadE"
                     /locus_tag="JN078_003025"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-dependent NAD(+) synthetase"
                     /protein_id="HAY9042154.1"
                     /translation="MTLQQQIIKALGAKPQINAEEEIRRSVDFLKSYLQTYPFIKSLV
                     LGISGGQDSTLAGKLCQMAINELRQETGNESLQFIAVRLPYGVQADEQDCQDAIAFIQ
                     PDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGT
                     DHAAEAITGFFTKYGDGGTDINPLYRLNKRQGKQLLAALACPEHLYKKAPTADLEDDR
                     PSLPDEVALGVTYDNIDDYLEGKNVPQQVARTIENWYLKTEHKRRPPITVFDDFWKK"
     gene            2219..3106
                     /gene="cho"
                     /locus_tag="JN078_003026"
     CDS             2219..3106
                     /gene="cho"
                     /locus_tag="JN078_003026"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease Cho"
                     /protein_id="HAY9042155.1"
                     /translation="MVRRLTSPRLEFEAAAIYEYPEHLRSFLNDLPTRPGVYLFHGES
                     DTMPLYIGKSVNIRSRVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQ
                     QPLFNKRLRRNRQLCALQLNEKRVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTIA
                     DEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCW
                     PWQGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDATTLIRTPAGFDHDGYKILCKPL
                     LSGNYEITELDPANDQRAS"
     gene            complement(3066..3641)
                     /gene="ves"
                     /locus_tag="JN078_003027"
     CDS             complement(3066..3641)
                     /gene="ves"
                     /locus_tag="JN078_003027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416256.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="environmental stress-induced protein Ves"
                     /protein_id="HAY9042156.1"
                     /translation="MEYFDMRKMSVNLWRNAAGETREICTFPPAKRDFYWRASIASIA
                     ANGEFSLFPGMERIVTLLEGGEMLLESADRFNHTLKPLQPFAFAADQVVKAKLTEGQM
                     SMDFNIMTRLDVCKAKVRIAERTFTTFGSRGGVVFVINGAWQLGDKLLTTDQGACWFD
                     GRHTLRLLQPQGKLLFSEINWLAGHSPDQVQ"
     gene            complement(3844..4314)
                     /gene="spy"
                     /locus_tag="JN078_003028"
     CDS             complement(3844..4314)
                     /gene="spy"
                     /locus_tag="JN078_003028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-independent periplasmic protein-refolding
                     chaperone"
                     /protein_id="HAY9042157.1"
                     /translation="MRKLTALFVASTLALGAANLAHAAAPADAKPMMHHKGKFGPHQD
                     MMFKDLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIVSDTFDKAKAEAQIAK
                     MEEQRKANMLAHMETQNKIYNILTPEQKKQFNANFEKRLTERPAAKGKMPATAE"
     gene            complement(4644..5612)
                     /gene="astE"
                     /locus_tag="JN078_003029"
     CDS             complement(4644..5612)
                     /gene="astE"
                     /locus_tag="JN078_003029"
                     /EC_number="3.5.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate desuccinylase"
                     /protein_id="HAY9042158.1"
                     /translation="MDNFLALTLTGKKPVITEREINGVRWRWLGDGVLELTPLTPPQG
                     ALVISAGIHGDETAPVEMLDALLGAISHGEIPLRWRLLVILGNPPALKQGKRYCHSDM
                     NRMFGGRWQLFAESGETCRARELEQCLEDFYDQGKESVRWHLDLHTAIRGSLHPQFGV
                     LPQRDIPWDEKFLTWLGAAGLEALVFHQEPGGTFTHFSARHFGALACTLELGKALPFG
                     QNDLRQFAVTASAIAALLSGESVGIVRTPPLRYRVVSQITRHSPSFEMHMASDTLNFM
                     PFEKGTLLAQDGEERFTVTHDVEYVLFPNPLVALGLRAGLMLEKIS"
     gene            complement(5605..6948)
                     /gene="astB"
                     /locus_tag="JN078_003030"
     CDS             complement(5605..6948)
                     /gene="astB"
                     /locus_tag="JN078_003030"
                     /EC_number="3.5.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-succinylarginine dihydrolase"
                     /protein_id="HAY9042159.1"
                     /translation="MNAWEVNFDGLVGLTHHYAGLSFGNEASTRHRFQVSNPRLAAKQ
                     GLLKMKTLADAGFPQAVIPPHERPFIPVLRQLGFSGSDEQVLEKVARQAPHWLSSVSS
                     ASPMWVANAATIAPSADTLDGKVHLTVANLNNKFHRSLEAPVTESLLKAIFNDEEKFS
                     VHSALPQVALLGDEGAANHNRLGGHYGEPGMQLFVYGREEGNDTRPSRYPARQTREAS
                     EAVARLNQVNPQQVIFAQQNPDVIDQGVFHNDVIAVSNRQVLFCHQQAFARQSQLLAN
                     LRARVNGFMAIEVPATQVSVSDAVSTYLFNSQLLSRDDGSMMLVLPQECREHAGVWGY
                     LNELLAADNPISELKVFDLRESMANGGGPACLRLRVVLTEEERRAVNPAVMMNDTLFN
                     ALNDWVDRYYRDRLTAADLADPQLLREGREALDVLSQLLNLGSVYPFQREGGGNG"
     gene            complement(6945..8423)
                     /gene="astD"
                     /locus_tag="JN078_003031"
     CDS             complement(6945..8423)
                     /gene="astD"
                     /locus_tag="JN078_003031"
                     /EC_number="1.2.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate-semialdehyde dehydrogenase"
                     /protein_id="HAY9042160.1"
                     /translation="MTLWINGDWITGQGASRVKRNPVSGEVLWQGNDADAAQVEQACR
                     AARAAFPRWARLSLAERQVVVERFAGLLESNKAELTAIIARETGKLRWEAATEVTAMI
                     NKIAISIKAYHVRTGEQRSEMPDGAASLRHRPHGVLAVFGPYNFPGHLPNGHIVPALL
                     AGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQGGRETGQALSALEDLDGLLF
                     TGRANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQR
                     CTCARRLLLKSGAQGDAFLARLVAVSQRLTPGNWDDEPQPFIGGLISEQAAQQVVTAW
                     QQLEAMGGRTLLAPRLLQLETSLLTPGIIEMTGVAGVPDEEVFGPLLRVWRYDSFEEA
                     ILMANNTRFGLSCGLVSPEREKFDQLLLEARAGIVNWNKPLTGAASTAPFGGIGASGN
                     HRPSAWYAADYCAWPMASLESDSLTLPATLNPGLDFSDEVVR"
     gene            complement(8420..9454)
                     /gene="astA"
                     /locus_tag="JN078_003032"
     CDS             complement(8420..9454)
                     /gene="astA"
                     /locus_tag="JN078_003032"
                     /EC_number="2.3.1.109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine N-succinyltransferase"
                     /protein_id="HAY9042161.1"
                     /translation="MMVIRPVERSDVSALMQLASKTGGGLTSLPANEATLSARIERAI
                     KTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAVGLNDPWHNYRVGTLVHASKELN
                     VYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVV
                     AEMRGVIDEHGYSPFWQSLGKRFFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLS
                     QEAQDVIGQVHPQTAPARAVLEKEGFRYRNYIDIFDGGPTLECDIDRVRAIRKSRLVE
                     VAEGQPAQGDFPACLVANENYHHFRVVLARTDPATERLILTAAQLDALKCHAGDRVRL
                     VRLCAVEKTA"
     gene            complement(9451..10671)
                     /gene="astC"
                     /locus_tag="JN078_003033"
                     /pseudo
     CDS             complement(9451..10671)
                     /gene="astC"
                     /locus_tag="JN078_003033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416262.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="succinylornithine/acetylornithine transaminase"
     gene            11117..11923
                     /gene="xthA"
                     /locus_tag="JN078_003034"
     CDS             11117..11923
                     /gene="xthA"
                     /locus_tag="JN078_003034"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HAY9042162.1"
                     /translation="MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPL
                     EEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGN
                     VTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD
                     IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSK
                     GFDDNRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFRR"
     gene            12090..>12658
                     /locus_tag="JN078_003035"
     CDS             12090..>12658
                     /locus_tag="JN078_003035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310483.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HAY9042163.1"
                     /translation="MNAERKFLFACLIFALVIYAIHAFGLFDLLTDLPHLQTLIRQSG
                     LFGYSLYILLFIIATLFLLPGSILVIAGGIVFGPLLGTLLSLIAATLASSCSFLLARW
                     LGRDLLLKYVGHSHTFQAIEKGIARNGIDFLILTRLIPLFPYNIQNYAYGLTTIAFWP
                     YTLISALTTLPGIVIYTVMASDLANEGITL"
BASE COUNT         3076 a         3426 c         3099 g         3057 t
ORIGIN      
        1 aaattaattt gctgcggctt ttttaatcgc tgcaaccgca gccttaagca cgcctaaacc
       61 atcgactttg ccataaagca gcgagtcaat tacttcaacc ggtttgttgg gtaacaaacg
      121 ctggatttcg ggcaacatat aagcaatctg cggccctaat aacacgacat cggcattctg
      181 acctttttca ccagccagtg tttccggaaa tgcttcaata atgaccggaa cttcatattt
      241 ttctgcctgt gcgcgcattt ttgataccag taaagaggta gacatgcccg cagaacaaaa
      301 cagataaatg tgtttctttt ccataaaact gccctcatcg acgattatct gtcagccaga
      361 cactccgcaa gccttaacct gcttccatgc tctgggtaac ttgcgaaacc aacatgactt
      421 tttttgtggc tgaaaggagt atacggtata gacctgagca atagtatttc tttgacctta
      481 taaattgtct ctccttgacc tgcggttatg accctcttca catttcgggc aaataattcg
      541 cgaagataat taagaactca ggccaaaaaa accggcgcaa tggccggttt ccgttgttac
      601 tcaagctttc aaacgaagtg attacttcgc agcctgtgga tcagtgtcgt attcagcaca
      661 ggtctgataa ccggagttga tgacatgtcc ggtatcatct aacgcgacaa agtaggtttc
      721 tgctttacca tcacgttgac ccaggatgta ggtctggcaa gtaccacgag catggatcat
      781 gctcacttca gacgaaggtt tacccgcaat ttgtgcaacc tgcgcccggc tcatgccttt
      841 tttgacgtct ttcaccacag gctgtacaaa ctggtctttg gtacgatcat aagccgtaca
      901 acccgccagc atggttaata ccgccgctgc actcagaatt cctgccatat tcttgttcat
      961 attccgtcct cttgtttatc agcgtgttag ataagcctgg aatacattgg gcgctttttc
     1021 aagcccgtga acgaaacggc tccgctttca gaggattcct gtatgacgtt ttatccacca
     1081 ttcaacccgc tgtcgcttgt cgtttcagta gcgacgggtt agctttaagg aagttttgtc
     1141 ttttctgtct ggaggggttc aatgacattg caacaacaaa taataaaggc gctgggcgca
     1201 aaaccgcaga ttaatgctga agaggaaatt cgtcgtagtg tcgattttct gaaaagctac
     1261 ctgcaaactt atccgttcat taaatcactg gtgctcggga tcagcggcgg tcaggactcc
     1321 acgcttgccg gtaagctgtg ccagatggcg attaatgagc tgcgccagga gaccggcaac
     1381 gaatcactgc aatttattgc cgtacgcctg ccctatggtg ttcaggccga cgaacaagat
     1441 tgccaggatg ccattgcctt tattcaaccg gatcgcgtat taaccgttaa tatcaagggc
     1501 gcggtattgg ccagcgaaca ggcgctgcgc gaagcgggca ttgaactgag cgattttgtc
     1561 cgtggcaatg aaaaagcgcg tgagcggatg aaagcacaat atagcattgc gggtatgacc
     1621 agcggtgtcg tggtgggcac cgatcatgca gcagaagcta ttaccggatt cttcactaaa
     1681 tatggtgacg gcggtacgga cattaatccg ctgtatcgtc tcaacaaacg tcagggtaaa
     1741 cagttactgg cggcattagc ttgcccggaa cacctttata agaaagcgcc aacggccgat
     1801 ctggaagatg atcgcccttc tctgccagat gaagtggcac tcggcgtgac ctatgacaat
     1861 atcgacgact atctggaagg gaaaaacgta cctcaacagg tcgccagaac aatagagaac
     1921 tggtatctga aaaccgaaca taaacgccgt ccgccaatta ccgttttcga tgatttctgg
     1981 aaaaagtaat aatttgcaca tattggattg tgcgaaaaag agtaatttgt tcacgccgga
     2041 tgcggcgtga acgccttatt cgacctataa aactatgcaa attcaataca ttgcaggagt
     2101 cgaataggcc tgacaggcgt agcacgtcag acggtgtaac ctttgtcatc gacccgcctc
     2161 ttttttaatc gcttcccgcc tgttacactg gatagataac cagcattcgg agtcaacagt
     2221 ggtacggcgt ttaacttctc cgcggctcga atttgaagct gcggcaattt atgaatatcc
     2281 cgaacattta cgttcattcc ttaatgactt acccacccga ccaggggtgt atctgtttca
     2341 tggtgaaagt gacaccatgc cgctctatat cggcaaaagc gttaacatcc gcagccgcgt
     2401 cctttctcat ttacgtaccc cggatgaagc cgccatgcta cggcaatccc gacggatcag
     2461 ctggatatgt accgccggtg aaatcggcgc tctgctcctt gaagcgcgat taatcaaaga
     2521 acaacagccg ctgtttaata aacggttgcg ccgcaatcgt cagctctgtg ccctgcaatt
     2581 aaatgaaaag cgcgtcgatg tggtgtatgc caaagaggtg gatttttcac gagcccccaa
     2641 cctgtttggc ctgtttgcca ataggcgcgc agctttgcaa gcattgcaga ccatcgctga
     2701 tgaacaaaaa ctttgttatg gcctgctggg actggaaccg ttaagtcgcg gtcgtgcatg
     2761 ttttcgttca gcgctaaaac gttgcgccgg agcatgctgc ggtaaagaga gccatgagga
     2821 acatgcgcta cgcttgcgcc agtctctgga gcgtttgcgg gtggtgtgtt ggccttggca
     2881 aggggcggtg gcgctgaaag aacagcaccc ggaaatgact caatatcata ttattcaaaa
     2941 ctggctgtgg ctgggggcgg ttaattcgct ggaagacgcg acaacgttaa ttcggacacc
     3001 cgccgggttt gatcacgacg gttataaaat tctttgtaag ccgctgcttt ccggtaacta
     3061 tgaaattact gaacttgatc cggcgaatga ccagcgagcc agttgatttc actgaacaac
     3121 agtttacctt gcggttgtaa aagccgcagg gtgtgcctgc catcgaacca gcacgcgccc
     3181 tggtcggtag tgagcaattt atcgcccagt tgccacgccc cgttaatcac aaacaccacc
     3241 ccgccgcgtg agccaaaggt agtaaacgta cgttcggcaa ttctgacttt cgccttacag
     3301 acatccaggc gtgtcatgat gttgaaatcc atcgacatct gcccttccgt cagtttcgct
     3361 tttaccacct ggtccgctgc aaaggcaaaa ggctgtaacg gttttaaggt atggttaaag
     3421 cggtctgcgc tttcaaggag catctcgccg ccttccagca acgtcactat cctttccatg
     3481 ccgggaaaca aagaaaactc cccattcgcc gcgatggatg caatgctggc acgccagtaa
     3541 aaatcacgtt ttgccggtgg gaaagtgcaa atttcgcgcg tttcaccggc agcatttcgc
     3601 cacagattca ccgacatttt acgcatatca aagtattcca tactcgctcc cggcccgttc
     3661 ttttcattgt tatcgttcag gtaaccgtgg atggttatcg gcaactcggg tgatttacgt
     3721 tagtggtgat caggcttttt ttacaactgt ttgagaagag aaaagaaaac cgccgatcct
     3781 gtccaccgca ttactgcaag gtagtggaca agaccggcgg tcttaagttt tttggctgaa
     3841 agattattca gcagttgcag gcattttacc ttttgccgct ggacgttctg tcagacgctt
     3901 ctcaaaatta gcattaaatt gctttttctg ttccggcgtc aggatgttgt aaattttgtt
     3961 ctgggtttcc atgtgcgcca gcatgttagc tttgcgctgt tcttccattt ttgcgatctg
     4021 cgcttcagct tttgctttat cgaaggtatc gctgacaatg atgtcatgca ttgcgcggcg
     4081 ttcttccagc ggcggacgtt tcatctggtc acgctggcct ttcatgattt cgcggatctg
     4141 ctgtttctgc gcgtcggtca ggttcaggtc tttgaacatc atgtcctgat gcggaccgaa
     4201 cttgcctttg tggtgcatca tcggcttcgc gtcagccggt gctgcggcat gggccaggtt
     4261 agccgcgcca agagccaggg tagaggcaac aaacagtgca gttaatttac gcatattcta
     4321 tatccttcct ttcagttatt tattacggct ttcttaagta gcgtgccgtg ttgacaagat
     4381 taactttact gactttagcg tcaattaatc agagcaacgg taaaacaatg aaagtgtaaa
     4441 aaacactttt gcgccaatta tggagaaaaa aagaaaattt gatggagagt gatgagagaa
     4501 tattacaaca caatgatttt gcagagatta tgaagaacta tactggatga ctggtgataa
     4561 ataaagcaaa taaccaggat taatctgtat taatttataa gaaagcaact taatacccgc
     4621 agaatgattt ctgcgggtaa gtattagctt attttttcga gcattaatcc cgcgcgtaat
     4681 cccaacgcta ccaacggatt agggaataac acatactcta catcatgggt tacggtaaaa
     4741 cgttcctctc cgtcctgcgc cagcaatgtt cctttctcaa acggcataaa attcagcgtg
     4801 tcacttgcca tatgcatttc gaaggacggc gagtggcgag taatttgcga aaccacccga
     4861 taacggagcg gcggtgttct cacgataccg acactctcac cagatagcag cgcagcaatt
     4921 gcgctggcag ttactgcaaa ctggcgaaga tcgttttgcc caaagggcaa cgctttgcca
     4981 agttccagcg tacaggccag cgcgccaaaa tgtctggcgc tgaaatgggt aaacgtacca
     5041 ccaggttcct gatggaacac cagcgcctcc agccccgccg cacccagcca cgtcagaaat
     5101 ttctcgtccc agggaatgtc gcgttgcggt aatacaccga actgcggatg caaggagcca
     5161 cgaattgcgg tatgtagatc aaggtgccag cgcacagatt ctttgccctg gtcataaaaa
     5221 tcttccaggc actgttccag ttcgcgcgcc cgacaggttt ctccgctttc agcaaatagc
     5281 tgccaacgac cgccaaacat tcgattcata tcgctatggc aataacgttt cccttgcttc
     5341 agcgcaggag gattcccgag gatcaccagc aaccgccaac gtaacgggat ctcgccgtga
     5401 gatatcgcgc caagcaacgc gtccagcatt tccacaggtg ccgtctcatc accgtggatc
     5461 cccgcagaaa tcaccagcgc gccttgcggt ggcgttaatg gcgtcagttc cagcacacca
     5521 tcgcccagcc agcgccagcg aacgccgttg atttctcgct cggtgataac cggtttttta
     5581 cccgttaagg tcagagcaag aaaattatcc attgccccct ccctcgcgct ggaacggata
     5641 aaccgaaccg agattcagta attggctcaa tacatccagt gcttcccgcc cttcgcgcag
     5701 caattgcggg tcggccagat cggcagcagt aagacgatcg cggtagtaac gatccaccca
     5761 gtcattgagc gcattaaaca aggtatcgtt catcatcacc gccggattca ccgcccggcg
     5821 ttcttcttct gtcaatacca cccgcaaccg caggcacgcc gggccgccgc cattcgccat
     5881 gctttcacgt aagtcaaaga cttttagttc gctaatcggg ttgtcagcgg caaggagttc
     5941 attgagataa ccccatactc cggcgtgttc ccgacactcc tgaggcagca ccaacatcat
     6001 ggaaccatca tcgcggctca acagttggct gttaaacaga taggtagaca ccgcatccga
     6061 cacggaaacc tgagttgccg gaacttctat cgccataaaa ccgttcaccc gcgcccgcag
     6121 gtttgccagt aactgtgact ggcgagcgaa cgcctgttgg tggcaaaaca gcacctggcg
     6181 gttacttacg gcaatcacgt cattatgaaa aacaccctgg tcgataacgt ccgggttttg
     6241 ctgggcgaaa atcacctgtt ggggattcac ctgattaagc cttgccaccg cctcgctggc
     6301 ttcgcgagtc tgtcgcgccg gataacggga aggccgggta tcattgcctt cttctcgccc
     6361 gtagacaaaa agttgcatac ccggctcacc gtaatgaccg ccgagacgat tgtggtttgc
     6421 cgccccctca tcaccgagca acgctacctg cggcaacgcc gaatggacgc taaatttctc
     6481 ttcgtcgtta aaaatagctt ttaacagcga ttcagtgacg ggcgcttcca gcgaacggtg
     6541 aaatttattg ttcaggttgg caacggtgag atgcactttg ccatccagcg tatcggcaga
     6601 tggcgcgatc gttgccgcat tggctaccca cattggcgaa gcggagctga cgctggaaag
     6661 ccagtgcggt gcctggcgtg caactttttc cagtacctgc tcatcgctac cactgaatcc
     6721 caactgacgc agcaccggaa taaacggacg ctcgtgcggc gggatcacgg cctgggggaa
     6781 tcctgcatcg gcaagggttt tcattttcag taagccctgt ttcgccgcca gtcgcgggtt
     6841 agacacctga aaacggtgac gggtagaggc ttcattacca aacgacaggc cagcgtaatg
     6901 atgcgtcagc cctaccagcc cgtcgaaatt aacttcccag gcgttcatcg caccacctca
     6961 tcggaaaaat ccagcccggg gttaagcgtt gcgggcaaag ttaacgagtc cgactccagg
     7021 ctcgccatag gccatgcgca gtaatctgcg gcataccagg cgctggggcg atggttaccg
     7081 gatgcaccaa tgccgccgaa tggcgcggta ctggcagcac cagtaagcgg tttgttccag
     7141 ttaacaatcc ccgcccgcgc ctccagcaac agttgatcga atttttcccg ttcgggggaa
     7201 accagaccgc aagagagtcc gaagcgagtg ttattcgcca ttagaatcgc ttcctcgaaa
     7261 gaatcataac gccagacgcg caataacggt ccgaacacct cttcatctgg tacgccagca
     7321 acgcctgtca tttcaatgat ccccggcgtc agcaacgatg tctctaattg taataagcgc
     7381 ggcgcaagca gggttcgtcc gcccatcgct tccagttgct gccaggcagt aaccacctgc
     7441 tgtgcggcct gttcagaaat cagcccgcca ataaacggct gcggttcgtc atcccagttg
     7501 cccggcgtta atcgctggct gacggcaacc agacgagcaa gaaacgcatc gccctgcgct
     7561 ccgcttttga gcaataaacg gcgggcgcag gtgcagcgtt gcccggctgt gacaaacgcc
     7621 gactgaatgg tcagatggac agccgcgtcg atatccgcca cctcatcgat aattagcgga
     7681 ttattaccgc ccatctcaag ggcgagaatt ttctccggct gaccggagag ctggcgatgc
     7741 agctggtagc cggtattggc gcgaccggta aacagcaaac cgtcgagatc ctccagcgca
     7801 ctcagcgcct gacccgtttc acgcccgccc tgcaccaggt tcagcacgcc cggcggcaag
     7861 ccagcctgct gccataaacg cattaccgct tcgccactcc acggtgtcag ttcgctgggt
     7921 ttaaagataa tggtgttacc tgccagcaat gccggaacga tatgtccgtt cggcaaatga
     7981 ccagggaaat tatacggccc aaacaccgcc agcacgccgt gcgggcgatg tcgcaggctc
     8041 gccgcaccgt ccggcatttc actacgctgc tcgccggtac gaacgtgata cgccttaatt
     8101 gatatcgcga ttttattgat catcgccgtc acttcggttg ccgcttccca gcgcagctta
     8161 cccgtttctc tggcaataat cgcggttaat tcggctttat tgctttccag caatccggca
     8221 aagcgttcga caacgacctg acgttcagcc aatgagagcc gcgcccagcg cggaaacgcc
     8281 gcacgggctg cccgacaagc ctgttcgacc tgagcggcat cggcatcatt gccttgccat
     8341 aacacctcgc ccgataccgg attacgcttc acacgcgatg cgccctggcc cgttatccag
     8401 tcaccgttaa tccataaagt catgctgttt tctccactgc gcacaggcgc accagacgaa
     8461 cgcgatcccc tgcgtggcat ttgagggcat ccagttgtgc ggcggttaaa atcaaacgct
     8521 cggttgccgg atcggtacgc gccagcacca cgcggaaatg gtgataattt tcattggcga
     8581 ccaggcaggc cggaaaatcg ccctgcgcag gctgcccttc tgccacttcc accagccgac
     8641 ttttacggat ggcgcgcacg cggtcgatgt cacactcaag cgttggcccg ccgtcgaaga
     8701 tgtcgatata gttgcggtaa cgaaaacctt ctttctccag caccgcgcgg gcaggcgcgg
     8761 tttgcggatg tacctgaccg atgacgtcct gggcttcctg ggataaaaag tgggtataga
     8821 tcggatgttt cggcatcagt tctgcaataa atgccttttg cccggtgccg cagagaaaat
     8881 cggcgcggct aaaatccatc gaaaagaagc gtttaccgag gctttgccag aacggtgaat
     8941 agccgtgttc gtcaatcacc ccgcgcattt cagcaaccac tttgtcatta aacttgtcgc
     9001 gaaaagccgc cataaacata aagcgcgatt tcgacagcaa atagccgttg ccctctttgc
     9061 gccagtccgg gtcgagaaac agcgtgcaca gctcgctgct gccggtgtga tcgttactaa
     9121 gaaacagcgt cggcaatgcg ttatagacat tcagctcttt tgaggcgtga accaacgtgc
     9181 cgacccgata gttgtgccag ggatcgttca gcccaaccgc cacctcaatg gcgcaaatcc
     9241 ccgccacggt gcctgtctcg ctatcttcca gcacgaacac atagccctgc tcgcttttgg
     9301 gcagttcgcc ttgccaggtt ttgattgccc tttcgatacg cgcggaaagc gtggcttcat
     9361 tagcgggaag cgacgtcagg ccgccgcccg ttttgctggc aagctgcatc agcgccgaga
     9421 catctgagcg ctcaacggga cggatgacca tcatgatgaa cctcggctaa caaaatgttc
     9481 gcaagcagct gcaaagcgat ccagtccggt cgtcacctct tcttcgctga cattgagcgc
     9541 aggcgcaaaa cgcaccacgt tgccacccgc aatcagtacc ataacgcctg ctttcgccgc
     9601 ctcctgagag atctgtttcg cttgtccggc gtaatcggca ttcagtacac agccaatcaa
     9661 caaacctaag ccgcgaactt cactgaacaa accgtagcgg tgattaatgg tattaagacg
     9721 ctcaacaaac cagtcgtgac gctgtttaac gccattaagc atctctggtg tgttgatgag
     9781 ctccagcact ttgcccgcca ccgccgaggc cagcggattg ccgccatagg tggtgccatg
     9841 agtgccaacg gtcatcacgc tggcgcactc ttcggttgtt aacaacgcac cgaccgggaa
     9901 atcgccgccc agcgctttgg cggtagttaa cagatcaggt gtcacgccgt agtgcatata
     9961 ggcatacagt tccccggtgc gcccgacgcc ggtttgtact tcatcaaaaa tcaacagcgc
    10021 attgtggcgg tcacacaatt cacgcagacc ttgtaaaaac gcgttgctgg ctggcaccac
    10081 accgccttcc ccctggatgg gttagacaat caccgcacag gtggcgtcgt caatcagcgc
    10141 gctggcagag ttaatatcgt tatatgcagc atgacggata tctggtggca gtggcgcaaa
    10201 atcctgtgaa taggctggct gcccacccgc actgacagta aacagcgtgc gaccatgaaa
    10261 cgcattttta aacgccatga taccgctctt atggctgccg tagcggtcgt gagcgaattt
    10321 acgcgccagt tttagcgccg cttcgttggc ttccgcaccg gagttacaaa agaagacgcg
    10381 atcggcaaac gtggcgtcga tcaatttttt cgccagtcgc agtaccggct cgttggtgta
    10441 accgttgccg gtatgccaga acttactcgc ctgttcgttc agcgcttcac gcagttccgg
    10501 atgcgcatgg cccagcgcgt tcaccgcaat gccacccgcg aagtcgatat actctttccc
    10561 ctgctgatcc cacaagcgcg aaccttcgcc acgtaccggt ataaagggtg ccggagcgta
    10621 aacaggtatc atccattcat caaagttttc acgcgtaatt ggctgagaca tagcgacctc
    10681 tacagtaaat aattcgttat ttatatgtta acaataagta atgtttgcgc tgtaaatgta
    10741 gattgcaggg ttcgtgccag ccagtgataa aagtgcataa acggcggagg ctaactggaa
    10801 atcaaggagt tataaccaaa ccatatgcat ttaaagtgca tataaagtga atacgtttgc
    10861 gatgtgggtg aataaaaaga ataaaaaacg caatgttatg cagaagtaaa atataattct
    10921 ggaattgtga tcattgacga aatttactgg aaattactgc gccattctga cgcagcgcgc
    10981 accaaaagcg ggcatttttt gcgccatcgt tgacatcatt aacaaccatc gatcaaatca
    11041 cttaacaaca ggcggtaagc aacgcgaaat tctgctacca tccacgcact ctttatctga
    11101 ataaatggca gcgactatga aatttgtctc ttttaatatc aacggcctgc gcgccagacc
    11161 tcaccagctt gaagccatcg tcgaaaagca ccaaccggat gtgattggcc tgcaggagac
    11221 aaaagttcat gacgatatgt ttccgctcga agaggtggcg aagctcggct acaacgtgtt
    11281 ttatcacggg cagaaaggcc attatggcgt ggcgctgctg accaaagaga cgccgattgc
    11341 cgtgcgtcgc ggctttcccg gtgacgacga agaggcgcag cggcggatta ttatggcgga
    11401 aatcccctca ctgctgggta atgtcaccgt gatcaacggt tacttcccgc agggtgaaag
    11461 ccgcgaccat ccgataaaat tcccggcaaa agcgcagttt tatcagaatc tgcaaaacta
    11521 cctggaaacc gaactcaaac gtgataatcc ggtactgatt atgggcgata tgaatatcag
    11581 ccctacagat ctggatatcg gcattggcga agaaaaccgt aagcgctggc tgcgtaccgg
    11641 taaatgctct ttcctgccgg aagagcgcga atggatggac aggctgatga gctgggggtt
    11701 ggtcgatacc ttccgccatg ctaatccgca aacagcagat cgtttctcat ggtttgatta
    11761 ccgctcaaaa ggttttgacg ataaccgtgg tctgcgcatc gacctgctgc tcgccagcca
    11821 accgctggca gaatgttgcg tagaaaccgg catcgactat gaaattcgca gcatggaaaa
    11881 accgtccgat cacgcccccg tctgggcgac cttccgccgc taatttagca gctctcctgg
    11941 ctcaaactgg gtcaggagaa ttaaccttga gaaaaatcaa caaactgtca gtaatgattt
    12001 gttgcctgcc gtcctttgtt ataccgtcac tgcgttttta gttgtctgac cacttctcta
    12061 ttatcaagtt tgatatagga aactccacga tgaatgctga gcgtaaattt cttttcgcct
    12121 gtcttatttt tgcgctggtc atttacgcta tccacgcttt cggtttattc gatctgctca
    12181 ccgatttacc ccacttacag acactcattc gccagagcgg attgttcggt tatagcctct
    12241 atattctgtt attcatcatt gccaccctct ttctgttacc aggaagcata ctggtgatcg
    12301 ctggaggaat agtttttggc ccgctcttag ggacactact ctcattaatt gccgccacgc
    12361 tggcctcctc gtgctcattc ctgctggcgc ggtggctggg acgtgattta ctgctgaaat
    12421 acgtgggcca tagccatacc ttccaggcca ttgaaaaagg cattgcgcgt aacggtattg
    12481 attttcttat tctgacccgc ttaatcccgt tgtttcctta caatattcaa aattacgctt
    12541 acggattaac caccatcgcc ttctggcctt atacccttat ttcggcactc acgaccctgc
    12601 ccggtattgt tatttatacc gtgatggcaa gcgatctcgc caatgaaggc attacgct
//
LOCUS       DADMJB010000125        12656 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.125, whole genome shotgun sequence.
ACCESSION   DADMJB010000125 DADMJB010000000
VERSION     DADMJB010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12656)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12656)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12656
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.125"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(12..88)
                     /locus_tag="JN078_003036"
     tRNA            complement(12..88)
                     /locus_tag="JN078_003036"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(52..54),aa:Met,seq:cat)
     gene            297..1394
                     /gene="mltA"
                     /locus_tag="JN078_003037"
     CDS             297..1394
                     /gene="mltA"
                     /locus_tag="JN078_003037"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008785702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HAY9042164.1"
                     /translation="MKGRWVKYLLMGTVVAMLAACSSKSTDRGQQYKDGKFTQPFSLV
                     NQPDAVGAPINAGDFAEQINHIRNSSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQFGI
                     DAWQMEGADNYGNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLPSRAEIYAGA
                     LGDKYILAYSNSLMDNFIMDVQGSGYIDFGDGSPLNFFSYAGKNGHAYRSIGKVLIDR
                     GEVKKEDMSMQAIRHWGETHSEAEVRELLEQNPSFVFFKPQSFAPVKGASAVPLVGRA
                     SVASDRSIIPPGTTLLAEVPLLDNNGKFNGQYELRLMVALDVGGAIKGQHFDIYQGIG
                     PEAGHRAGWYNHYGRVWVLKTAPGAGNVFSG"
     gene            1471..2277
                     /gene="tcdA"
                     /locus_tag="JN078_003038"
     CDS             1471..2277
                     /gene="tcdA"
                     /locus_tag="JN078_003038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HAY9042165.1"
                     /translation="MSVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSW
                     AAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRV
                     TVVDDFVTPDNVAQYMSAGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQID
                     PTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSIGKLGVDCVFSTEALVYPQSDGT
                     VCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKMMAKAARQG"
     gene            complement(2328..2771)
                     /gene="csdE"
                     /locus_tag="JN078_003039"
     CDS             complement(2328..2771)
                     /gene="csdE"
                     /locus_tag="JN078_003039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase sulfur acceptor subunit
                     CsdE"
                     /protein_id="HAY9042166.1"
                     /translation="MTNPQFAGHPFGTTVTAETLRNTFAPLTQWEDKYRQLIMLGKQL
                     PALPDELKAQAKEIAGCENRVWLGYTVAENGKMHFFGDSEGRIVLGLLAVLLTAVEGK
                     TAAELQAQSPLALFDELGLRGQLSASRSQGLNALSEAIIAAAKQV"
     gene            complement(2771..3976)
                     /gene="csdA"
                     /locus_tag="JN078_003040"
     CDS             complement(2771..3976)
                     /gene="csdA"
                     /locus_tag="JN078_003040"
                     /EC_number="3.13.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase CsdA"
                     /protein_id="HAY9042167.1"
                     /translation="MNVFNPAQFRAQFPALQDAGVYLDSAATALKPEAVVEATRQFYS
                     LSAGNVHRSQFAEAQRLTARYEAAREKVAQLLNAPDDKTIVWTRGTTESINMVAQCYA
                     RPRLQPGDEIIVSVAEHHANLVPWLMVAQQTGAKVVKLPLNAQRLPDVDLLPELITPR
                     SRILALSQMSNVTGGCPDLARAITFAHSAGMVVMVDGAQGAVHFPADVQQLDIDFYAF
                     SGHKLYGPTGIGVLYGKSELLEAMSPWLGGGKMIHEVSFDGFTTQSAPWKLEAGTPNV
                     AGVIGLSAALEWLADYDINQAENWSHSLATLAEDALAKRPGFRSFRCQDSSLLAFDFA
                     GVHHSDMVTLLAEYGIALRAGQHCAQPLLAELGVTGTLRASFAPYNTKSDVDALVNAV
                     DRALELLVD"
     gene            4168..4395
                     /locus_tag="JN078_003041"
     CDS             4168..4395
                     /locus_tag="JN078_003041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417289.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="HAY9042168.1"
                     /translation="MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTD
                     NDTGMISYKDANGNKQQINRTDVKEMVELDQ"
     gene            4746..5663
                     /locus_tag="JN078_003042"
     CDS             4746..5663
                     /locus_tag="JN078_003042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GcvA"
                     /protein_id="HAY9042169.1"
                     /translation="MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSL
                     EDFLGLKLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLLP
                     SFAIHWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKL
                     YAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDASRRDWQTYTRQLGLNHINVQQGP
                     IFSHSAMVLQAAIHGQGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQA
                     ELGKIAAFRQWILAKAAAEQEKFRFRYEQ"
     gene            5682..6077
                     /locus_tag="JN078_003043"
     CDS             5682..6077
                     /locus_tag="JN078_003043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HAY9042170.1"
                     /translation="MTSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGL
                     EYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVT
                     PVGGVSFLAGWALMLVGAIRLKRKGVSHE"
     gene            6070..7170
                     /gene="rlmM"
                     /locus_tag="JN078_003044"
     CDS             6070..7170
                     /gene="rlmM"
                     /locus_tag="JN078_003044"
                     /EC_number="2.1.1.186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytidine(2498)-2'-O)-methyltransferase
                     RlmM"
                     /protein_id="HAY9042171.1"
                     /translation="MNKVVLLCRPGFEKECAAEITDKAGQREIFGFARVKENSGYVIY
                     ECYQPDDGDKLIRELPFSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGE
                     LRVEVADTNESKELLKFCRKFTVPLRAALRDAGVLANYETPKRPVVHVFFIAPGCCYT
                     GYSYSNNNSPFYMGIPRLKFPAEAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDL
                     GACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVC
                     DMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINA
                     QIQARQLYHDREEVTVHVRRIWAAVGGRRDER"
     gene            complement(7214..7945)
                     /gene="fucR"
                     /locus_tag="JN078_003045"
     CDS             complement(7214..7945)
                     /gene="fucR"
                     /locus_tag="JN078_003045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose operon activator"
                     /protein_id="HAY9042172.1"
                     /translation="MKAARQQAIVDLLLNHTSLTTEALSEQLKVSKETIRRDLNELQT
                     QGKILRNHGRAKYIHRQNQDSGDPFHIRLKSHYAHKADIAREALAWIEEGMVIALDAS
                     STCWYLARQLPDINIQVFTNSHPICYELGKRERIQLISSGGTLERKYGCYVNPSLISQ
                     LKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEA
                     RIGHLDEVTHIISDERQVATSLVTA"
     gene            complement(8003..8425)
                     /gene="fucU"
                     /locus_tag="JN078_003046"
     CDS             complement(8003..8425)
                     /gene="fucU"
                     /locus_tag="JN078_003046"
                     /EC_number="5.1.3.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose mutarotase"
                     /protein_id="HAY9042173.1"
                     /translation="MLKTISPLISPELLKVLAEMGHGDEIIFSDAHFPAHSMGPQVIR
                     ADGLLVSDLLQAIIPLFELDSYAPPLVMMAAVEGDTLDPEVERRYRNALSLQAPCPDI
                     IRINRFAFYERAQKAFAIVITGERAKYGNILLKKGVTP"
     gene            complement(8427..9845)
                     /gene="fucK"
                     /locus_tag="JN078_003047"
     CDS             complement(8427..9845)
                     /gene="fucK"
                     /locus_tag="JN078_003047"
                     /EC_number="2.7.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417283.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculokinase"
                     /protein_id="HAY9042174.1"
                     /translation="MKQEVILVLDCGATNVRAIAVNRQGKIVARASTPNASDIAMENN
                     TWHQWSLDAILQRFADCCRQINSELTECHIRGIAVTTFGVDGALVDKQGNLLYPIISW
                     KCPRTAAVMDNIEQLISAQRLQAISGVGAFSFNTLYKLVWLKENHPQLLERTHAWFFI
                     SSLINHRLTGEFTTDITMAGTSQMLDIQQRDFSPQILQATGIPRRLFPRLVEAGEQIG
                     TLQNSAAAMLGLPVGIPVISAGHDTQFALFGAGADQNEPVLSSGTWEILMVRSAQVDT
                     SLLSQYAGSTCELDSQAGLYNPGMQWLASGVLEWVRKLFWTAETPWQMLIEEARLIAP
                     SADGVKMQCDLLSCQNAGWQGVTLNTTRGHFYRAALEGLTAQLQRNLQMLEKIGHFKA
                     SELLLVGGGSRNTLWNQIKANMLDIPVKVLDDAETTVAGAALFGWYGVGEFNSPEEAR
                     AQIHYQYRYFYPQTEPEFIEEV"
     gene            complement(9842..11587)
                     /gene="fucI"
                     /locus_tag="JN078_003048"
     CDS             complement(9842..11587)
                     /gene="fucI"
                     /locus_tag="JN078_003048"
                     /EC_number="5.3.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000724154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose isomerase"
                     /protein_id="HAY9042175.1"
                     /translation="MKKISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALLTEK
                     LRHACGAAVECVISDTCIAGMAEAAACEEKFSSQNVGLTITVTPCWCYGSETIDMDPT
                     RPKAIWGFNGTERPGAVYLAAALAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLL
                     RFARAGLAVASMKGKSYLSLGGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRID
                     QKIYDEAELEMALAWADKNFRYGEDENNKQYQRNAEQSRAVLRESLLMAMCIRDMMQG
                     NSKLADIGRVEESLGYNAIAAGFQGQRHWTDQYPNGDTAEAILNSSFDWNGVREPFVV
                     ATENDSLNGVAMLMGHQLTGTAQVFADVRTYWSPEAIERVTGHKLDGLAEHGIIHLIN
                     SGSAALDGSCKQRDSEGNPTMKPHWEISQQEADACLAATEWCPAIHEYFRGGGYSSRF
                     LTEGGVPFTMTRVNIIKGLGPVLQIAEGWSVELPKDVHDILNKRTNSTWPTTWFAPRL
                     TGKGPFTDVYSVMANWGANHGVLTIGHVGADFITLASMLRIPVCMHNVEETKVYRPSA
                     WAAHGMDIEVLQERL"
     gene            complement(11620..>12656)
                     /gene="fucP"
                     /locus_tag="JN078_003049"
     CDS             complement(11620..>12656)
                     /gene="fucP"
                     /locus_tag="JN078_003049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HAY9042176.1"
                     /translation="ITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAA
                     NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQ
                     LSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRL
                     ARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGR
                     FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFS
                     LGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF
                     ARFRSQTATN"
BASE COUNT         3028 a         3167 c         3355 g         3106 t
ORIGIN      
        1 caaattttaa ttggttgcgg gggccggatt tgaaccgacg accttcgggt tatgagcccg
       61 acgagctacc aggctgctcc accccgcgtc cgtggatgcg cactatactc cgctcgcgtt
      121 ttcatgcaac ctttttttta ccccgatcac ggatttagca tgattttgaa caaaaacaaa
      181 ccactaaagc ctattttttg tgcaaaattt gcgtcaggga gaggctgctc atttcattaa
      241 acgcggcggt ttgttatctt cgttgcgcct tattttttaa cctgaagaag agaacaatga
      301 aaggacgttg ggtaaagtac cttcttatgg gcacggttgt ggcaatgctt gccgcctgct
      361 cttccaaatc aaccgatcgc ggacagcaat ataaagacgg gaaatttacc cagcctttct
      421 ctctggtgaa ccagccagat gccgttggcg cgccgattaa cgccggtgat tttgccgagc
      481 aaattaacca tatccgtaat tcgtcaccgc gtctgtatgg caaccagagt aatgtttata
      541 acgcggtgca agagtggctg cgcgcaggcg gtgatacccg caatatgcgc cagttcggca
      601 ttgatgcctg gcagatggaa ggtgccgaca actatggtaa cgtgcagttt acaggctatt
      661 acacgccggt aattcaggcg cgccataccc gccagggcga gttccagtat cctatttacc
      721 gtatgccgcc aaaacgtggt cgtctgccgt ctcgtgcgga gatctacgcg ggggcattgg
      781 gcgataaata catcctcgct tacagcaact ctctgatgga taacttcatt atggatgtgc
      841 agggtagtgg gtatatcgac tttggtgatg gcagtccgct taactttttc agctatgcag
      901 ggaaaaacgg tcatgcctat cgcagcattg gtaaggtgct gatcgaccgt ggcgaagtga
      961 aaaaagaaga tatgtcgatg caggcgattc gtcattgggg cgaaacacac agtgaagccg
     1021 aggttcgcga gctgctggaa cagaacccgt ctttcgtctt ctttaaaccg caatcttttg
     1081 caccggtgaa aggggcaagt gcggtgccgc tggttggccg tgcttctgtt gcctccgatc
     1141 gttcaattat tccgccaggt actaccttgc tggcagaagt gccgctgctg gataataacg
     1201 gcaaatttaa cggtcagtac gaattgcgtc tgatggtggc gctggatgtc ggtggcgcaa
     1261 tcaaaggcca acacttcgat atctatcaag ggatcgggcc ggaagccgga catcgcgcag
     1321 gttggtacaa ccactatgga cgtgtctggg tgctgaaaac cgccccgggc gcaggtaacg
     1381 tctttagcgg ctgatgtgtt attctgtata ccgtttttac ggatacgaca gggtgaggga
     1441 taacctcacc ctttttaatt ctgaggtgct atgtctgtgg taattagtga tgcatggcgt
     1501 cagcgttttg gtggcacagc gcgtctgtat ggtgaaaaag cgttgcaact gtttgctgac
     1561 gcgcatattt gtgtggttgg tatcggtggt gtcggttcct gggcggcgga agcgctggcg
     1621 cgcacgggga ttggcgcaat cacgcttatc gatatggatg atgtgtgcgt caccaatacc
     1681 aatcggcaaa ttcacgctct gcgcgataac gtcgggctgg caaaagcgga agtcatggcg
     1741 gagcgcattc gccagattaa cccggagtgc cgtgtaacgg tggtggatga tttcgtgacg
     1801 ccggataacg tagcgcaata tatgagtgcc ggttattcgt acgtgattga tgccattgat
     1861 agtgtacgac ccaaagcggc gctgattgct tattgtcggc gcaataaaat cccgctggtc
     1921 acgaccggtg gcgcgggtgg gcagattgac ccgacgcaga ttcaggttac cgatctggcg
     1981 aaaacgattc aggacccgct ggcggcgaag ttgcgcgagc gcctgaaaag cgattttggc
     2041 gtagtgaaaa acagtatagg taagctcggc gtggattgcg tgttttctac tgaagcgctg
     2101 gtgtacccgc agtcagacgg tacggtgtgt gcgatgaaag ccacggcaga agggccgaag
     2161 cggatggatt gtgcatctgg atttggcgcg gcaacgatgg tgaccgccac ctttgggttt
     2221 gttgcggttt ctcatgcgct gaagaagatg atggcgaaag cagcgcgtca gggttaaaca
     2281 atcaggtcgg atgcgacgcg aacgtcttat ccgacctggt tctgtgctta aacctgcttc
     2341 gccgcagcga taattgcctc gcttaacgca ttcaacccct ggctgcgtga ggcgctaagc
     2401 tgcccacgca atcccagctc atcaaacaat gccagcggcg actgtgcctg taattcggcg
     2461 gcggttttcc cctcaacggc agtcaacaac accgccaaca ggccgagcac aatgcgccct
     2521 tcgctgtcgc caaagaagtg cattttaccg ttttcagcca cggtatatcc cagccagacg
     2581 cggttttcgc atccggcaat ctctttagcc tgcgctttta actcgtctgg caaagccgga
     2641 agctgtttcc ccagcatgat caactggcga tatttatctt cccattgcgt caacggtgcg
     2701 aaggtattgc gtaacgtttc tgcggttacg gttgtgccga acggatgtcc ggcgaattgc
     2761 gggtttgtca ttaatccacc aataattcca gcgcgcggtc aacggcattc accagcgcat
     2821 ccacatcact ctttgtatta tatggcgcaa aagaggcgcg cagtgtgccg gttacgccta
     2881 attctgccag tagcggctga gcacaatgtt gcccggcccg caaggcaata ccgtactccg
     2941 ccagtagcgt caccatatcg ctgtgatgaa cgccagcaaa atcaaaggcc agcaggctgg
     3001 aatcctggca gcggaatgaa cgaaagcctg gacgtttcgc cagcgcatct tccgccagcg
     3061 ttgctaagct atggctccag ttttcggcct ggttgatatc gtaatctgcc agccattcca
     3121 gcgccgcgct taatcctatg acaccagcca catttggcgt tcctgcttcc agtttccacg
     3181 gcgcagattg agtcgtgaag ccgtcaaaac tcacttcgtg aatcattttg ccgccaccca
     3241 gccagggcga catcgcttcc agcagttctg atttgccata cagcacgccg atacccgtcg
     3301 ggccatacag tttgtgacca gagaaagcat agaaatcgat atccagttgc tgaacatccg
     3361 cggggaaatg caccgccccc tgagcaccat caaccatcac caccatccct gctgaatgag
     3421 caaaggtaat cgctcgcgcc agatccgggc aaccgccagt aacgttcgac atctgactca
     3481 acgccagaat ccgactacgg ggagtaatca gttctggcaa caaatcgaca tccggcagtc
     3541 gctgcgcatt aagcggcaat ttcaccactt tggctccagt ttgttgggcg accatcagcc
     3601 aggggacgag gttggcgtgg tgttctgcca cgctgacaat aatctcatcg cccggttgca
     3661 gacgcggacg cgcatagcat tgtgccacca tgttgatgga ttcagtggtg ccgcgcgtcc
     3721 agacgatagt tttatcatcc ggtgcattca gtaattgcgc cactttctct cgtgcagctt
     3781 cataacgcgc ggtcaggcgt tgggcttcgg caaactggct gcgatggacg tttccggcgc
     3841 tcaggctgta aaactgtcga gtggcttcaa ccacggcttc aggtttaagc gcggtcgcgg
     3901 cgctgtcgag atagacgccc gcatcctgta gtgcgggaaa ctgggcgcga aactgcgcgg
     3961 gattaaaaac gttcatggta ctcctcggct tgatgcaccg atcgtgacgc aaaattcact
     4021 ttgatacaag gagagtgcta accatcagaa ttatctggat atcctggcga agccgcgtaa
     4081 gtaacatatg ctgaatagtg ttaggcgtta attttagcct gttaatcaat actattaaga
     4141 tttattaatc gctttaagga gaagatgatg aaaaagactg ccgcaattat ttctgcctgt
     4201 atgctgactt ttgccctgag cgcctgttcc ggttcgaact atgtgatgca caccaatgac
     4261 ggacgtacca tcgtctctga cggcaaacca cagactgata acgataccgg tatgatttcg
     4321 tataaagacg ctaatggcaa caaacagcag atcaaccgta ctgacgtgaa agagatggtc
     4381 gaactggatc agtaattcgc gatcgcaagg taaaaaaaag caccgcaatt aggcggtgct
     4441 acattaatca ctatggacag acagggtaaa tgtacaggaa gtgaaaaaag gtagctttgc
     4501 taccatggtc tgaatcgcag accaattgca aacacaacaa cacaacatca caaccgtaag
     4561 ccaaaagttc accagaacac gcattccgat aaaacttttc gttccggctc aggaagtgcc
     4621 gccactatag gtatttgctg gtagaagctc aacggacaat ttataatggc tcagattaaa
     4681 aaaactaata ggttacatag tgtgatctaa ttgttaaatt catttaacat caaagtttaa
     4741 tagccatgtc taaacgatta ccaccgctaa atgccttacg agtttttgat gccgcagcac
     4801 gccatttaag tttcactcgc gcagcagaag agctttttgt gacccaggcc gcagtaagtc
     4861 atcaaatcaa gtctcttgag gattttttgg ggctaaaact gttccgccgc cgtaatcgtt
     4921 cactcctgct gaccgaggaa gggcaaagct atttcctcga tatcaaagag atattttcgc
     4981 aattaaccga agcgacgcgt aaactccagg cccgtagcgc caagggggcg ttgacggtca
     5041 gtttactccc cagtttcgcc attcattggt tggttccgcg actttccagc tttaattcag
     5101 cttatccggg aattgacgtt cgaatccagg cggttgatcg tcaggaagat aagctggcgg
     5161 atgatgttga tgtggcgata ttttatggtc ggggcaactg gccggggcta cgggtggaaa
     5221 aactgtacgc cgaatattta ttgccggtgt gttcgccgct actgctgact ggcgaaaaac
     5281 ccttgaagac accggaagat ctggctaaac atacgttatt acatgatgct tcgcgccgtg
     5341 actggcagac atatacccga cagttggggt taaatcatat caacgttcag caagggccaa
     5401 tttttagcca tagcgccatg gtgctgcaag cggctatcca cgggcaggga gtggcgctgg
     5461 caaataacgt gatggcgcaa tctgaaatcg aggccggacg tcttgtttgc ccgtttaatg
     5521 atgttctggt cagtaaaaac gctttttatc tggtttgtca tgacagccag gcagaactgg
     5581 gtaaaatagc cgcctttcgc caatggatcc tggcgaaagc cgctgctgaa caagaaaaat
     5641 tccgctttcg ttatgaacaa taatttacgt agggtacgac catgaccagc cgttttatgc
     5701 tgattttcgc cgccattagc ggcttcattt ttgtggctct gggcgctttt ggcgcgcatg
     5761 tgttaagtaa aaccatgggg gccgttgaga tgggctggat ccagaccggc ctcgaatacc
     5821 aggcgtttca tacgctggcg atcttaggtc tggcggtggc aatgcagcgt cgcatcagta
     5881 tctggtttta ctggagtagc gttttcctcg cgttaggcac ggtgttgttc agcggcagcc
     5941 tttattgcct ggcgctgtcc catctgcgtt tgtgggcgtt tgtcactccg gttggcggcg
     6001 tgagcttcct cgcgggctgg gcgttaatgt tagttggtgc tatccgttta aagcgcaagg
     6061 gcgtaagtca tgaataaggt tgtattgctg tgccgtccgg gctttgaaaa agagtgcgcc
     6121 gcagaaatta ccgataaagc cggccagcgg gaaattttcg gttttgcccg cgtgaaagag
     6181 aattcgggtt atgtcattta tgaatgttat caacctgatg atggcgataa gttaatccgt
     6241 gagctgccgt tcagttcatt aatttttgcc cgccagtggt ttgtggtggg ggaactcctg
     6301 cagcatttgc cgccagaaga tcgtattacc cccattgtcg gcatgttaca gggcgtagta
     6361 gagaagggcg gtgaactgcg tgttgaagtt gccgatacca acgaaagcaa agagttgctg
     6421 aaattctgcc gtaaatttac tgttccgcta cgcgctgcct tgcgcgatgc cggggtgctg
     6481 gcgaactatg aaacgccgaa gcgtccggtt gtgcatgtat tctttattgc accaggctgc
     6541 tgctataccg gttactcata cagcaacaat aattcgccgt tctatatggg cattccgcgc
     6601 ctgaaatttc cggcagaggc gccgagtcgt tccacgctca aactggaaga ggcatttcat
     6661 gtgtttattc ctgcggatga gtgggatgaa cgcctggcga acgggatgtg ggcggtggat
     6721 ttaggcgctt gccctggcgg ctggacctac caactggtga agcgcaacat gtgggtttat
     6781 tccgtcgaca acggcccgat ggcgcaaagt ctgatggata ccgggcaggt gacgtggctg
     6841 cgggaagacg gtttcaaatt ccgtccgaca cgcagcaata tctcctggat ggtatgcgat
     6901 atggttgaaa aaccggctaa agttgcggca ttgatggcgc agtggctggt taatggctgg
     6961 tgccgtgaaa ccattttcaa tctcaaactg ccgatgaaaa aacgctacga agaagtatca
     7021 cacaatctgg cgtatattca ggcacagctt gatgaacatg gcataaatgc tcagattcag
     7081 gcgcggcagt tgtatcacga tcgcgaagaa gtgacggtgc acgtccgccg catctgggct
     7141 gcggtgggtg gtcgtcgcga cgagcgataa caggcaaggc cggggcgtcg tcttcggcct
     7201 gctacccttt ccgtcaggct gttaccaaag aagttgcaac ctggcgctca tcagaaataa
     7261 tgtgcgttac ctcatccaga tgcccgatgc gggcttcccc tgaacgatta aatttacttt
     7321 tatcaatcaa taacaacgat tgcgcggcac gttttaatag catcgatttg taatcagcgt
     7381 tgatcgcatt ggagtcccac agtgcgccgc tgctatcgat cccttcacaa gaaaaaataa
     7441 acagatcgat ttccagcgat ttaagttggg aaatcagcga gggattgacg taacagccat
     7501 atttgcgctc aagtgtgccg ccggaactga tcagttgaat gcgttcgcgt ttaccgagtt
     7561 catagcaaat cggatggcta ttggtgaaga cctgaatgtt gatgtcaggc aactggcgtg
     7621 ccagatacca gcaagttgaa ctggcgtcta aggctatcac catcccttct tcaatccacg
     7681 cgagcgcctc gcgcgcgata tctgctttat gcgcataatg gcttttcagc ctgatgtgaa
     7741 agggatcgcc actgtcttga ttttgacggt ggatatattt agcgcgtcca tgattgcgca
     7801 gaattttacc ctgcgtctgt aattcattga gatcgcgacg aatggtttct ttactgacct
     7861 ttagctgttc agagagagct tccgtggtca ggctggtatg gttcagcagc aggtcgacta
     7921 tcgcttgctg gcgtgccgct ttcatatttt tcaccccatc attcgataac cgcccgcgtc
     7981 atgcgggcgt accggtatga gattacggtg ttaccccttt ttttaaaaga atattcccgt
     8041 acttcgctcg ttcgcctgtg ataacgatcg caaaggcttt ttgcgcccgt tcataaaacg
     8101 caaaacgatt gatgcggatg atgtcaggac acggggcttg tagtgaaagc gcattacggt
     8161 aacgtcgttc tacttcagga tcgagagtgt caccttctac cgccgccatc atcaccagcg
     8221 gcggtgcata actgtccagt tcaaataacg ggataatcgc ctggagcaag tcgctcacca
     8281 acaggccatc agcgcggatc acctgcggtc ccatcgaatg ggcgggaaag tgagcatcgg
     8341 aaaaaataat ttcatctcca tgtcccatct ctgccagcac tttcaatagt tcgggagaaa
     8401 ttaacggcga aattgttttc agcatttcac acttcctcta taaattcagg ttcagtttgc
     8461 gggtagaaat aacggtactg ataatgaatc tgtgcgcggg cttcttcagg gctgttaaat
     8521 tcccctacgc cataccaacc gaacagcgca gctcctgcga cggtcgtttc ggcgtcgtcg
     8581 agaactttta ccggaatatc aagcatattg gctttaatct gattccacaa tgtgttgcga
     8641 cttcctccac cgactaacaa taattcagag gccttaaagt gcccgatttt ttccagcatc
     8701 tgtagattgc gctgtaattg cgcagttaac ccttccagcg ccgcgcgata gaaatgcccc
     8761 cgcgtggtat taagcgtcac tccttgccag ccagcgttct gacacgacaa taaatcacac
     8821 tgcattttta cgccatccgc gctaggcgcg ataagacgag cttcttcaat caacatttgc
     8881 cagggtgttt cagccgtcca gaacagtttt ctcacccatt ccagcacgcc ggatgccagc
     8941 cattgcatac ctgggttata caaccctgcc tggctatcca gttcgcaggt ggaaccggcg
     9001 tactgactta acagcgaagt atcaacctgg gcgctacgga ccattaaaat ttcccatgta
     9061 ccggaagaga gcacgggttc attttggtcg gcaccagcgc caaaaagggc gaactgggta
     9121 tcgtgacctg cggaaatcac cggtatgcca acgggtaagc cgagcattgc tgcggcgctg
     9181 ttctgtagcg taccaatctg ttcacccgct tccaccagac gagggaagag tcggcgtgga
     9241 ataccagtgg cttgtaaaat ttgcggactg aaatcgcgtt gctggatatc cagcatctgg
     9301 ctggttccgg ccatcgtgat atcagtagtg aattcgccgg ttaaacggtg gttaatcagc
     9361 gacgaaataa agaaccaggc gtgcgtgcgt tccagcagtt gtggatgatt ttctttcaac
     9421 cacaccaact tatataacgt attgaaacta aaggctccga cgccagaaat agcctgcaac
     9481 cgctgtgcgg agatcaactg ttcaatattg tccataaccg ctgctgttcg cggacatttc
     9541 cagctaatga tcggatagag cagattgcct tgcttatcta ccagagcgcc atccacacca
     9601 aaggtggtga cggcgatacc gcggatgtgg cattcagtca gttcactatt gatttgccga
     9661 cagcaatcag caaagcgttg caaaatggcg tctaaagacc actggtgcca ggtgttgttt
     9721 tccatcgcga tatcgctggc attaggcgtt gaggcgcggg caacaatttt tccctgccga
     9781 ttaaccgcga tggccctgac attggtcgcg ccacagtcga gtaccaggat aacttcttgt
     9841 ttcataatcg ctcctgcaag acttcaatat ccatgccgtg cgcagcccag gcagaaggac
     9901 gatacacttt ggtctcttca acgttgtgca tacataccgg gatacgcagc atggaggcga
     9961 gagtgataaa gtcagcgcca acgtggccga tggtcagaac cccatggtta gcgccccagt
    10021 tcgccattac cgagtacaca tccgtaaacg gccctttacc ggtgaggcgc ggtgcaaacc
    10081 aggtggttgg ccaggttgag ttggtgcgtt tgttgaggat gtcatgcaca tccttcggca
    10141 attccacgct ccagccttcc gcgatttgca gtaccggtcc caggcctttg atgatgttga
    10201 cacgagtcat ggtgaacggg acgccgcctt cggtaaggaa gcgggaagag taaccgccgc
    10261 cacggaagta ttcgtggatc gccgggcacc attcggtagc ggcgaggcaa gcgtcagcct
    10321 cttgctgaga gatttcccag tgcggcttca tcgtcgggtt accttcgctg tcgcgttgtt
    10381 tacaggaacc gtccagcgca gcagaacctg agttgatcaa atggatgatg ccgtgttctg
    10441 ccagtccatc gagtttatgc cccgttacac gctcaattgc ttctggtgac cagtaggtac
    10501 gcacatcggc aaatacctga gcggtgccgg tgagctggtg acccattagc attgccacgc
    10561 cgttaagact gtcgttttcg gtcgccacga caaagggttc gcgcacgcca ttccagtcaa
    10621 atgaactgtt gaggatcgct tcggcggtgt caccattggg atattgatcg gtccagtgac
    10681 gttgcccctg gaagcccgca gcgatggcgt tgtagccaag tgattcttcc acgcgaccaa
    10741 tatcggccag tttgctgttg ccttgcatca tgtcgcggat acacatcgcc atcagtaaac
    10801 tttcgcgcag aactgcgcgg ctttgctcgg cattgcgttg atactgtttg ttattttcat
    10861 cttcgccata gcggaagttt ttatcagccc aggccagtgc catttccagt tcggcttcgt
    10921 cgtaaatctt ctgatcgata cggcgacgca gttcggtcat atccaccgcc tggactttca
    10981 ttcccagcca ggattcaaag aagttgtgat caacgatgga accggcgata cccatcgaaa
    11041 cgccgcccag cgacagatag cttttacctt tcatgctggc gacggccaaa ccggcgcggg
    11101 caaagcgcag cagtttttct tcaacatcgg caggaatcga tgtgtcatcg gcatcctgaa
    11161 cgtcatgacc gtaaatggag aatgccggga tgcctttctg gctgtgagct gccagagccg
    11221 ctgccaggta aacagcgccg ggacgttcag tgccgttaaa gccccaaatg gctttcgggc
    11281 gggttggatc catgtcgatg gtttcactgc catagcacca gcaaggcgtt accgtaatgg
    11341 tgaggcctac attctggctg ctgaattttt cttcgcaagc agcggcttca gccatacccg
    11401 cgatacaggt atcggaaatg acacactcga cggcagctcc gcaggcatgg cgcagtttct
    11461 cggtcagcag tgcggccgta gctttcgcca tattcattgt ttgttcttca agcgactcac
    11521 gaacacccat gcgacgaccg tcaataaccg ggcggatacc aattttcggt aagctgattt
    11581 ttttcattac agattcctca ctttattcgg aaaatatgtt cagttagttg ccgtttgaga
    11641 gcggaaacgg gcaaagataa agatgaccgc gaagcagagt gcggggatca gttcagcagt
    11701 ggggatgttg cccgccgcgt cactgacaaa acccatgacc ggagtgacaa taccgccgcc
    11761 aataatggtc ataacgatga aggacgaacc gtatttggtg tcctggccga gattcttaat
    11821 gcccagcgag aagattgttg ggtactgaat cgacataaag gcgctgcata aagtcagggc
    11881 tattaagccc acatgaccgc cagcgaaggc tgagatcagg cacagtgcca tagcgattaa
    11941 tgcgtaggcg gccaggactt tgtgtggtgc gaagcgactg atgagccagg taccggtgaa
    12001 acgaccaata aagaagcaca ccatggttcc ggttaaatag ttagcggcaa agcctgcagt
    12061 catacctgga atttcttcta cagcgtagcg aatcaaatag ctccagcagg ccgtttgtgc
    12121 gccaacgtag cagaattgcg ctaatactgc ccagcgccag tggcgaatac gcgccaggcg
    12181 agaaagcgat gcggagaacg atccttgttt ggcgtcactg tgattatcac tctgcaatgc
    12241 cgggaatttc gtcagcatga tcagcagggc gaccagtaac acgatagcca cgatgatcat
    12301 ataaggtgtc tgtaccgata ataccaggct gtgtttatac gcactcaatt gctctggaga
    12361 cattttatcg agaacgtctt gcgattgatg tggcacgtta gacaaaataa gactttgccc
    12421 aaagacaacc gcgataattg cgccaaacga gttaaatgtt tgcgcaagat ttaagcggaa
    12481 gtgaccactg ctttccggcc ctaataccgt aacaaaaggg tttgcggcag tttccagaca
    12541 acctaatccg gctgcaataa taaataggcc aactaaaaat aaggtgtagt tcattatttc
    12601 tgcagcgggc cagaataatg cagcgcccag ggcatataaa aataacccag taataa
//
LOCUS       DADMJB010000126        12570 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.126, whole genome shotgun sequence.
ACCESSION   DADMJB010000126 DADMJB010000000
VERSION     DADMJB010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12570
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.126"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..156
                     /locus_tag="JN078_003050"
     CDS             <1..156
                     /locus_tag="JN078_003050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9042177.1"
                     /translation="ILQLCRNDSLMIGRESFSVDRITPDDGGCSYIRLRREGAGNVRA
                     GGYYEGA"
     gene            143..730
                     /locus_tag="JN078_003051"
     CDS             143..730
                     /locus_tag="JN078_003051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001214489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9042178.1"
                     /translation="MRGLENAIRNLNSLDTRMVPQASAWAVNRVAAKVVSVATRQVAR
                     NTVAGDNQVKGGPLKLVRQRVRVFKASPAGKMYARIRVNRGNLPAIKLGTTCRRAGDG
                     LKVGKYFFRGAFIQQLANGRWHVLRRLPEACFETGKDSKGRPRKNRLPVEVVKIPLAG
                     PLTQAFEDARDRIIAAEMPKQLGYALKQQLRIHLG"
     gene            727..1128
                     /locus_tag="JN078_003052"
     CDS             727..1128
                     /locus_tag="JN078_003052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9042179.1"
                     /translation="MNRHTQIRQAVLASLKGECGGNVVLFDGLPAFIDAQELPAVAVW
                     LSDAQYTGKMTDEDDWQAVLHIAVFVRAQAPDSELDTWMENTIFPAMKDIPVLSGLID
                     TMIPLGFNYQRDNEMATWAMAEITYQITYTN"
     gene            1139..1879
                     /locus_tag="JN078_003053"
     CDS             1139..1879
                     /locus_tag="JN078_003053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707740.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9042180.1"
                     /translation="MTTPNPLAKTKGAGTTFWMYTGKGDAFANPLSDTDWLRLAMVKD
                     LQPGEMTADAEDDTYLDDEDADWKTTTQGQKSVGDTLATLAWRPGDSGQKKLVQLFDS
                     GEVCAFRIKYPNGTVDVFRGWLSSLGKTITSKEVMTRTVKISGVGRPYLAEEGAETVG
                     VTGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATVKG
                     VKQGSVSIVGMTSDGEFVAVAAVTVSAP"
     gene            1938..2324
                     /locus_tag="JN078_003054"
     CDS             1938..2324
                     /locus_tag="JN078_003054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707739.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein G"
                     /protein_id="HAY9042181.1"
                     /translation="MFLKQDTFNYEKQSVVLSELSGLQRIEYLTFVQQRTAKFDAQEG
                     ELPEAERQIAFLRMGMDINAWLVSRSLWNAEQSQDVETLCASIMTTWSYDALGAGAER
                     VLSLSGMGTIENAGDDDHEALTPEKS"
     gene            2333..2661
                     /locus_tag="JN078_003055"
                     /pseudo
     CDS             2333..2661
                     /locus_tag="JN078_003055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308863.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein T"
     gene            2633..5674
                     /locus_tag="JN078_003056"
     CDS             2633..5674
                     /locus_tag="JN078_003056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HAY9042182.1"
                     /translation="MDQIANLVIDLGIDAAEFKNEIPRIKNLLNGAAGDAERSSARMQ
                     RFMERQTQAARQTMHAASSAATAASAHAQTVEKNARAHERMAREVEQTRLRVDALNQK
                     MREEQAQARALAEAQDKAAAAFYRQIDSVKQAGAGLQELQRIQQQIRQARNSGGVGQQ
                     DYLALISEITAKTRALTQAEEQATRQKAAFIRQLKEQATRQNLSSSELLRARAAQLGV
                     SSAAEVYIRKMERAGKATHSLGLKSAAARRELGVLISQMARGNFGALRGSGITLANRA
                     GWTGALMSPKGMMTGGVIGGLVAAVLGLGKAWHDGRKEGEEFNRQLALTGHYAGVTVG
                     QLWKLSRAISGNGITQHAAAGALAQVVGSGAFHGNDIGMVAKAAAQMERSVGQSVSDT
                     INQFKRLKDDPVNAAKALDNALHFLTATQLEQIRVLGEQGRSSDAARIAMSALAEETG
                     KRTSDIDNNLNALGSTLQTLSDWWKQFWDAAMNIGREDSLDAQIDALQEKIQRAKKYP
                     WTNASTQVEYDQQRLNDLQEKKRRKDLQDAKAQAERNYQEQQKRRNAENAALNRMNET
                     EAARHQREIARINAMQYADQAVRDAAIQRENERYEKAIKKNTRATRNDEATRLLLQYS
                     QQQAQVEGQIAAARQSAGIATERMTEAHKQLLALQQRISDLDGKKLTADEKSVLARKN
                     ELIQALTLLDVKQQELQKQTALNDLRKKTVQLTSQLADKERALREQHNLDIATAGMGD
                     KQRQRYQAQLRIRQEYRQQLQQLENDSRQKGTYGTEDYRRAEEVLKGSLKRQLNENKR
                     YWQELEVAQGDWKNGAMRAFQNFTADADNAVGTAEQMFTVAFSSAGNALATFCTTGKL
                     NFKSFTSSLLSDMARIMAQMAMMQAVKGVGSLFGFTTNADGGVYQSADLSRYSGTVVN
                     RPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVADTGGSGMVMFAPQYNIGINND
                     GTNGQIGPAALKVVYDLGKKAAADFMQQQARDGGRLSGAYR"
     gene            5674..6003
                     /locus_tag="JN078_003057"
     CDS             5674..6003
                     /locus_tag="JN078_003057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9042183.1"
                     /translation="METFRWKVRPDMNVVSEPKVVAVKLGDGYEQRRPAGLNNLLSTY
                     SVTIRVRKGEHPPLKAFLERHGGVRAFQWTPPYDWKPIRVACRKWSASVGALWVTVTA
                     DFEQVVN"
     gene            6003..6702
                     /locus_tag="JN078_003058"
                     /pseudo
     CDS             6003..6702
                     /locus_tag="JN078_003058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706643.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
     gene            6707..7450
                     /locus_tag="JN078_003059"
     CDS             6707..7450
                     /locus_tag="JN078_003059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9042184.1"
                     /translation="MTQTESAILAHARRCAPAESCGFVVRTPEGERYIPCVNISAEPE
                     AYFRIAPEDWLRAEMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGAIHK
                     FRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGDDWWRHGQNLYLDNLEAT
                     GLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRR
                     THSLWRHREWHASAFTGICNDLAAASTFV"
     gene            7387..7989
                     /locus_tag="JN078_003060"
     CDS             7387..7989
                     /locus_tag="JN078_003060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000090847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HAY9042185.1"
                     /translation="MARICLYGDLQRFGRRIDLRVKTGAEAIRALATQLPAFRQKLSD
                     GWYQVRIAGRDAGETELSARLNEPLANGAVIHIVPRLVGAKSGGVFQAVLGAAVMAVA
                     IWMPGVGIMASNLLFSLGASMTLGGVAQMLAPKARTPRTQTTDNGKQNTCFSSLDNMV
                     AQGNVLPVLYGEMRVGSRVVSQEISTADEGDGGQVVVIGR"
     gene            8050..11529
                     /locus_tag="JN078_003061"
     CDS             8050..11529
                     /locus_tag="JN078_003061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HAY9042186.1"
                     /translation="MGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKS
                     VLLNGTPVLDSEGKTNFSGVTVVFRAGEQEQTPPEGVESSGSETVLGTEVKYDTPITR
                     TITSANIDRLRLTFGVQALVENTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTT
                     SQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALV
                     GVQVDSEQFGNQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTLKPAYSNNMAWCR
                     WDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRK
                     AWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSAL
                     KDRHNVVEVNWIDPDNGHETATELVEDAQAILRYGRNVTKMDAFGCTSRGQAHRAGLW
                     LIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLD
                     REITLPSSCTTLISLVDGNGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTL
                     RQRLFRCVSIRENDDGTYAITAVQHVPEKEAIVDNGAHFDGDRRGTVNGVTPPAVQHL
                     TAEVTADSGEYQVLARWDTPKVVKGVSFLLRLTVAADDGSERLVSTARTTETTYRFRQ
                     LALGNYSLTVRAVNARGQQGDPASVSFRIAAPAAPVTIELIPGYFQITAVPKLAVYDP
                     TVQFEFWFSEKRIADIRQVETSARYLGTALYWIAASINIRPGHDYYFYVRSVNTVGKS
                     AFVEAVGRASDDAEGYLSFYKGLINNTHLGKELWTQIDNGQLAPDLTEIRTSITNVSN
                     EITQTVNKKLENQSAAIQQIQKVQVDTNNNLNSMWAVKLQQMKDGRLYIAGIGAGIEN
                     TPAGMQSQVLLAADRIAMINPANGNTKPMFVGQGDQIFMNDVFLKRLTAPTITSGGNP
                     PAFSLTPGGRLTAKNADISGNVNANSGTLNNVTINKNCRVLGKLSANQIEGDLVKTVG
                     KPFPRDSRAPERWPSGTITVRVYDDQPFDRQIVIPAVAFRGAKHERKNNNIYSSCSLI
                     VKKNGAEIYNRTTLDNTLIYTGVIDMPAGHGHMTLEFSVSAWLVNGWYPTASISDLLV
                     VVMKKATAGITIS"
     gene            11597..12196
                     /locus_tag="JN078_003062"
     CDS             11597..12196
                     /locus_tag="JN078_003062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ail/Lom family outer membrane beta-barrel
                     protein"
                     /protein_id="HAY9042187.1"
                     /translation="MRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLQPHTDMPG
                     SDDLKGINVKYRYEFTDTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAG
                     PSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAW
                     GAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF"
     gene            12260..>12570
                     /locus_tag="JN078_003063"
     CDS             12260..>12570
                     /locus_tag="JN078_003063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004981847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9042188.1"
                     /translation="MAVKISGVLKDGAGKPVVNCAIELRARRTSPTVVAHVVATCVTD
                     NNGAYVIEAEPGYYEVALHCNGWQPTRVGDIDVAPTDAPGTLNAFLNAPKDGDLRPEV
                     M"
BASE COUNT         2935 a         2966 c         4037 g         2632 t
ORIGIN      
        1 attttacagc tgtgtcgcaa tgattcgctg atgattggcc gggagtcttt cagcgtggat
       61 cgtattactc ctgatgacgg cggatgtagt tatatccggt tgcggcgtga aggagcagga
      121 aacgtaaggg cagggggata ttatgagggg gcttgagaat gccatccgca atctgaacag
      181 tcttgatacc cgtatggtgc cgcaggccag cgcatgggca gtaaaccggg ttgctgcaaa
      241 agttgtctcg gttgccaccc ggcaggtcgc caggaatacc gttgcgggag ataaccaggt
      301 gaaggggggc cccctgaaac tggtgcgtca gcgcgtccgg gtatttaaag ccagtccggc
      361 aggaaaaatg tatgcccgta tccgtgttaa ccggggcaat ctgcccgcca ttaagcttgg
      421 cacaacatgc cggcgtgccg gtgacggact gaaggtgggg aaatactttt ttcgtggtgc
      481 gtttatccag cagctggcga acggtcgctg gcatgttctc aggcgtcttc ctgaagcgtg
      541 ttttgaaaca ggaaaggaca gtaaggggcg gcccagaaaa aatcgtctgc ccgtggaggt
      601 tgtgaaaatt ccgctggccg gaccgctgac acaggcattt gaggatgccc gcgatcgcat
      661 cattgccgcg gaaatgccga aacagctggg gtatgccctg aaacagcaac tgaggataca
      721 tttgggatga acaggcacac acaaatccgc caggcagtac tggcaagcct gaagggcgaa
      781 tgcgggggga atgtcgtgct ttttgacggg cttccggcat ttattgatgc gcaggaactg
      841 cccgccgtgg cggtgtggct gagtgatgcg cagtacaccg gaaaaatgac ggatgaggac
      901 gactggcagg ctgttctgca tattgccgtt ttcgtccgtg cacaggcgcc ggattctgag
      961 ctggatacgt ggatggagaa caccatattt ccggccatga aggatattcc ggtgctttcc
     1021 ggactcatcg acaccatgat cccactcggt tttaactatc aacgtgataa tgagatggcc
     1081 acctgggcga tggcggaaat cacgtaccag atcacgtaca cgaattaagg aggtggcaat
     1141 gaccacacca aatccactgg caaagacgaa aggtgcggga acgacgttct ggatgtacac
     1201 cggcaagggc gatgcgtttg cgaacccttt gtcggacact gactggctgc gtcttgcgat
     1261 ggtgaaggat ctgcaacctg gcgaaatgac cgctgatgca gaagatgaca cttatctcga
     1321 tgatgaagat gcagactgga aaacgacaac ccaggggcag aaatccgtcg gtgatacttt
     1381 ggcgacgctg gcctggcgtc cgggtgacag cgggcagaaa aaactggttc agttgttcga
     1441 ttccggtgaa gtctgcgcgt ttcgtatcaa ataccccaac ggtacggttg atgttttccg
     1501 tggctggctg agttcactgg gtaaaaccat tacctcaaaa gaggtgatga cccgtactgt
     1561 aaaaatcagc ggtgtggggc gtccgtatct ggcagaggag ggcgctgaaa ccgtgggtgt
     1621 taccggactg acggtggcac cggcatctgt cagtgtcaaa gcgggagcaa ccaccacact
     1681 gacctttaca gtaaaacctg acggggccag tgacaaagcg atcagtgtgc attcgtcaga
     1741 tcctcagact gcttcggtga ccctgagcgg gcttgtggcc acggtgaaag gcgtgaagca
     1801 gggcagtgtc agcatcgtgg gcatgacctc tgacggagag tttgtggcag tggctgcggt
     1861 gaccgtcagc gcaccataac aggacgatac tcatcattgc cccggttatc cggggctttt
     1921 tgcatccgga gaacatgatg tttctgaaac aggatacgtt taattatgaa aaacagtccg
     1981 tggtgctcag tgagctgtcc gggctgcaga gaattgaata tctgacgttt gttcagcagc
     2041 gaacggcaaa gtttgatgca caggagggag aactgccgga ggctgaacga cagattgctt
     2101 ttctgcgtat gggaatggat atcaatgcct ggctggtttc ccgctcactg tggaatgctg
     2161 agcagtctca ggatgttgag acgctttgcg catccattat gacaacatgg tcgtatgatg
     2221 cgctgggcgc gggggcggag agggttctgt cgctgagcgg tatggggacc attgagaatg
     2281 ccggggatga tgatcatgag gcgctgacgc cggaaaagtc ctgacgcggg aaatgcagtt
     2341 tgtcatgcgg cttgcccggg agttccggcg ggcagactgg cggcggatgc tgtcggaaat
     2401 gtcggccact gagcttggtg agggggcgat tatttccgga tgcagagctt cagtgatgtg
     2461 tggatggatg cgcagtttgc ctcgctgaag gcattgatcg tgagaatggt gtccggcagc
     2521 agtgatgctg cggtggctga tttcagcctt ttaccggaag agaacgggat accggagcga
     2581 acggacgaag aactgatgca tcttggggaa ggtatttccg gaggtgtgcg ttatggacca
     2641 gatagccaac ctggtcattg atttggggat tgatgcggca gagtttaaaa atgaaattcc
     2701 ccgtatcaaa aaccttctga atggtgcagc cggtgatgca gaacggtctt ctgcccgtat
     2761 gcagcgtttt atggagcgtc agactcaggc ggcccggcag acaatgcatg cggcttcttc
     2821 ggctgcaaca gcagcatcag cccatgcgca gacggtggag aagaatgcac gggctcatga
     2881 acgcatggcc cgtgaggtgg aacaaacccg tctgcgcgtg gatgccctga atcagaaaat
     2941 gcgcgaggaa caggcgcagg ccagggcact ggcggaggcg caggataaag cggctgccgc
     3001 cttttatcgc cagattgaca gtgtgaaaca ggccggtgcg gggcttcagg aattacagcg
     3061 tattcagcag cagatccgac aggccagaaa cagtggcggg gttggtcagc aggattatct
     3121 ggcgctgatt tcggagatca cggcgaaaac ccgtgccctg acgcaggcag aggaacaggc
     3181 cacccggcag aaagcggcgt ttatccgcca gcttaaagag caggcaaccc gccagaatct
     3241 gtcgtcttct gagttgcttc gcgccagggc ggctcagctg ggggtaagca gtgctgcaga
     3301 agtgtatatc cgcaaaatgg agcgggcagg aaaagccaca cattcgctgg ggctgaaaag
     3361 tgcggcagcc cggcgggagc tgggggtgtt aatcagtcag atggcgcgcg gcaattttgg
     3421 tgcgctgagg ggatccggga taacgctggc taaccgtgcc ggatggacag gcgcactgat
     3481 gtcgccgaaa ggcatgatga ctggcggcgt tattggcgga cttgtcgcgg cggtcctggg
     3541 tctgggtaaa gcctggcatg acggccggaa ggagggcgag gaatttaacc gtcagctggc
     3601 gctgacggga cattatgccg gtgtcactgt cgggcagttg tggaaactca gccgggccat
     3661 atccgggaat ggtatcacgc aacatgcggc agccggtgcg ctggcacagg tggtgggcag
     3721 tggggcattt catggaaacg atattggtat ggtggcgaaa gctgccgcac agatggagcg
     3781 atcggttggc cagtcggtca gcgataccat aaatcagttt aagcggctga aggatgatcc
     3841 tgtaaatgcc gcgaaggcgc tggacaatgc gctgcatttt ttgactgcca ctcagcttga
     3901 gcagatacgc gtccttgggg agcaggggcg gtccagtgat gcggcccgga tcgccatgtc
     3961 tgcgctggca gaggaaaccg gtaaacgcac atctgatatt gataataatc tcaatgcgct
     4021 gggtagtacg ctgcaaacct tgtctgactg gtggaagcag ttctgggatg cggccatgaa
     4081 tattggtcgt gaagactcgc tggatgcgca gattgatgcg ttacaggaaa aaattcagcg
     4141 cgcgaaaaaa tatccgtgga caaacgcctc cacacaggtg gagtacgatc agcagcgtct
     4201 taacgatctt caggagaaaa aacgccggaa ggatttgcag gatgcaaaag cgcaggcaga
     4261 acggaattac caggagcaac agaaacgccg gaatgctgaa aatgccgcgc tgaaccggat
     4321 gaatgaaacg gaagctgcac gacatcagcg ggaaattgcg cgtattaatg ccatgcagta
     4381 cgccgaccag gctgtcaggg atgcggcgat acagcgtgaa aatgaacgtt acgaaaaagc
     4441 cattaagaaa aatacacggg caacccgtaa tgatgaggcc acccggttat tgctgcagta
     4501 cagtcagcag caggcacagg tggaagggca gattgctgct gccagacagt cagcaggcat
     4561 tgccactgaa aggatgactg aagcgcataa acagcttctg gccctgcagc agcgcatcag
     4621 cgacctggac gggaaaaagc tgacggcaga tgaaaagagt gtgctggccc gtaagaatga
     4681 gctgattcag gcgctgacgc tgctggatgt gaaacagcag gagctgcaga aacagacagc
     4741 gcttaacgac ctgagaaaaa aaacggttca gctgaccagc cagctggcag acaaagaacg
     4801 tgcactgcgt gagcagcaca atctggatat tgccactgca ggtatggggg ataagcagcg
     4861 gcagcgctac caggcacagt tgcgcatccg gcaggaatac cggcaacagt tgcaacagct
     4921 tgagaatgac agtcgccaga aaggcactta cgggacggag gactaccgga gggctgagga
     4981 ggtgctgaag gggagcctga agcgacaact gaatgaaaac aaacgctact ggcaggaact
     5041 ggaagtggcg cagggcgact ggaaaaacgg tgccatgcgg gcgtttcaga attttacggc
     5101 ggatgcggat aatgcggtgg gaacggcaga acagatgttt acagtggcat tcagcagtgc
     5161 cggtaatgca ctggcgacat tctgtaccac cggtaagctg aattttaaat ccttcacctc
     5221 ttccctgttg tcagatatgg ccagaattat ggcacagatg gccatgatgc aggcggtaaa
     5281 gggcgtcggc tctttattcg gcttcacgac taatgctgat ggcggtgttt accagtctgc
     5341 tgatttgagt cgctacagtg gcacggtggt taaccgtccg acgttttttg cttttgcaaa
     5401 aggcgcgggt gtgatggggg aagcgggacc tgaagccatt ctgccactgc gtcgcggtgc
     5461 tgatggtaag ctgggggttg tggcggatac tggtggttca ggcatggtga tgtttgcccc
     5521 gcagtacaac atcgggatca ataacgacgg cacgaacggg cagataggtc cggcagcact
     5581 gaaggtggtt tatgacctcg ggaaaaaagc ggccgcggac tttatgcaac agcaggcccg
     5641 tgatggtggc cggttaagtg gagcataccg gtaatggaga cgtttcgctg gaaggtgcgc
     5701 ccggatatga atgtggtatc agagccaaaa gtggtggcag tgaagctggg tgatggttat
     5761 gaacagcgtc gcccggcggg actgaataat ctgctgtcga cttacagcgt gacgatacgt
     5821 gttcgtaaag gtgaacaccc acctttaaaa gcctttctgg aacggcacgg tggcgtccgc
     5881 gcatttcagt ggacgccacc ttatgactgg aaaccgatca gggtggcttg tcgtaaatgg
     5941 tcggcaagcg tgggggcgtt atgggtgact gtaacggccg attttgaaca ggtggtgaac
     6001 tgatgcagga tatccggcag gaaacactga atgaatgcac ccgtgcggag cagtcggcca
     6061 gcgtggtgct ctgggaaatc gacctgacag aggtcggtgg agaacgttat tttttctgta
     6121 atgagcagaa cgaaaaaggt gagccggtca cctggcaggg gcgacagtat cagccgtatc
     6181 ccattcaggg ggagtggttt tgaactgaat ggcaaaggca ccagtacgcg ccccacgctg
     6241 acggtttcta acctgtacgg tatggtcgcc gggatggcgg aagatctgca gagtctggtc
     6301 ggcggaacgg tggtccggcg taaggtttac gcccgttttc tggatgcggt gaacttcgtc
     6361 aacggaaaca gtgacgccga tccggagcag gaggtgatca gccgctggcg catcgagcag
     6421 tgcagcgaac tgagcgcggt cagtgcctct tttgtgctgg ccacaccaac ggagacggat
     6481 ggcgcggttt tcccggggcg tatcatgctg gcgaatacct gtatgtggac ctaccgttct
     6541 gatgagtgtg gttacacggg cagggcagtg gctgacgagt tcgacaaacc aacgacggat
     6601 atccggaagg acaaatgcag caagtgtatg cgcgggtgtg agttgcgcaa caataccggt
     6661 aatttcggcg gtttcctttc catcaataaa ctttctcagt aaatccatga cacagacaga
     6721 atcagcgatt ctggcgcacg cccggcgatg tgcgccagcg gagtcgtgtg gcttcgtggt
     6781 gagaacgccg gagggggagc ggtatatccc ttgtgtgaat atttctgcag agccggaggc
     6841 gtattttcgt atcgcaccgg aagactggct gcgggcagag atgcaggggg agattgtggc
     6901 actggtccac agtcatcccg gtggtctgcc ctggctgagt gaggctgacc ggcggctgca
     6961 ggtgcagagt gatttgccgt ggtggctggt ctgccggggg gcgattcaca agttccgctg
     7021 tgtgccgcat ctcaccgggc ggcgctttga gcacggggtg acggactgtt acacgctgtt
     7081 ccgggatgct tatcatctgg cggggattga gatgccggat tttcatcgcg gggatgactg
     7141 gtggcgtcac ggtcagaatc tctatctgga taatctggag gccacagggc tgtatcaggt
     7201 gccgttgtca tcagcacaac cgggcgatgt gctgctgtgc tgttttggtt catcggtgcc
     7261 gaatcatgcc gccatttact gcggcgacgg tgagctgctg caccatattc ctgaacaact
     7321 gagtaaacga gagaggtata ccgacaaatg gcagcgacgc acacactccc tctggcgtca
     7381 ccgggaatgg cacgcatctg cctttacggg gatttgcaac gatttggccg ccgcatcgac
     7441 cttcgtgtga aaacgggggc tgaagccatc cgcgcactgg ccacacagct cccggcgttt
     7501 cgtcagaaac tgagtgacgg ctggtatcag gtgcgcattg ccgggcgtga tgcaggtgaa
     7561 accgaattgt ctgcccgtct taatgagccg ctggcaaatg gtgcagtgat ccacatagta
     7621 ccgcgtctgg tgggagctaa aagtggcggt gtgtttcagg cggtgctggg ggcagctgtt
     7681 atggcggttg ctatatggat gccgggggta ggaattatgg cgagtaatct gctgttttct
     7741 ctcggtgcca gtatgacgct tggcggtgtt gcacagatgc tggcaccgaa agccagaact
     7801 ccccgtacac agacaacgga taacggcaaa cagaacacct gtttctcctc actggataac
     7861 atggttgccc agggcaatgt tctgcctgtt ctgtacggtg aaatgcgcgt ggggtcgcgg
     7921 gtggtatctc aggagatcag cacggcagac gaaggggatg gtggtcaggt tgtggtgatt
     7981 ggtcgctgat gcaaaatgtt tcatgtgaaa ccgcctgcgg gcggttttgt cgtttatgga
     8041 gcgtgaggaa tgggtaaagg cagcagtaag gggcataccc cgcgcgaagc gaaggacaac
     8101 ctgaaatcca cgcagttgct gagtgtgatt gatgccatca gcgaagggcc ggttgacggt
     8161 ccggtggatg gattaaaaag cgtgctgctg aacggtacgc cagtcctgga cagcgagggg
     8221 aagacaaact tttccggtgt tacggtggtg ttccgcgccg gcgagcagga gcagacaccg
     8281 ccggaggggg ttgaatcttc cggctcagag actgtgctgg gtacggaagt gaaatacgac
     8341 acgccgatca cccggaccat cacgtcggca aacattgatc gtctgcgcct gaccttcggt
     8401 gtgcaggcac tggtggaaaa cacctcaaag ggggaccgga atccgtcgga agtccgcctg
     8461 ctggttcaga tacagcgtaa cggtggctgg gtgacggaaa aagacatcac cattaagggc
     8521 aaaaccactt cgcagtatct ggcctcggtg gtggtgggta acctgccgcc gcgcccgttt
     8581 aatatccgga tgcgcaggat gacaccggac agcaccacag accagctgca gaacaaaacg
     8641 ctctggtcgt cgtacaccga aatcatcgat gtgaaacagt gctacccgaa cacggcgctg
     8701 gtcggcgtgc aggtggattc agagcagttc ggtaaccagc aggtgagtcg caattatcat
     8761 cttcgcgggc gcattctgca ggtgccgtcg aactataacc cgcagacgcg gcaatacagc
     8821 ggtatctggg acggaacgct taagccagca tacagcaaca acatggcctg gtgtcggtgg
     8881 gacatgctca ctcatccgcg ctacggcatg gggaaacgtc ttggtgcggc agatgtggac
     8941 aaatgggcgc tgtatgtcat cggccagtac tgcgaccagt cagtgccgga cggatttggc
     9001 ggcacggagc cgcgcatcac ctgtaacgct tacctgacca cacagcgtaa ggcgtgggat
     9061 gttctcagtg atttctgctc ggcgatgcgc tgtatgccgg tatggaacgg gcagacgctg
     9121 acgttcgtgc aggaccgacc gtcggataaa gtgtggacct ataaccgcag taatgtggtg
     9181 atgccggatg atggcgcgcc gttccgctac agcttcagcg ccctgaagga ccgccataat
     9241 gtcgttgagg tgaactggat tgatccggac aacggtcatg agacggcgac agagcttgtg
     9301 gaggacgcgc aggccattct ccgttacggt cgtaacgtca cgaagatgga tgcctttggc
     9361 tgtaccagcc ggggacaggc gcaccgcgcc gggctgtggc tgattaaaac ggaactgctg
     9421 gaaacgcaga ccgtggactt cagcgtcggc gcagaagggc ttcgccatgt accgggtgat
     9481 gtcattgaaa tctgcgatga tgattatgcc ggtatcagca ccggtggtcg cgtactggcg
     9541 gtgaacagcc agacccggac gctgacgctc gaccgtgaaa tcacgctgcc gtcctcctgt
     9601 accacgctga taagcctggt tgacggaaat ggcaatccgg tcagcgtgga ggttcagtcc
     9661 gtcaccgacg gcgtgaaggt gaaagtgagc cgggttcctg acggcgttgc agaatacagc
     9721 gtgtgggggc tgaagctgcc gacgctgcgc cagcgcctgt tccgctgcgt gagtatccgt
     9781 gagaacgacg acggcacgta tgccatcacc gccgtgcagc atgtgccgga aaaagaggcc
     9841 atcgtggata acggggcaca ctttgacggt gaccggcgcg gcacggtgaa tggtgtcacg
     9901 ccgccagcgg tgcagcatct gaccgccgaa gtcaccgcag acagcgggga atatcaggtg
     9961 ctggcgcgat gggacacgcc gaaggtggtg aagggtgtga gcttcctgct tcgcctgacc
    10021 gtggcagcgg acgacggcag tgagcggctg gtcagcacag ccaggacgac ggaaaccaca
    10081 taccgcttca ggcagctggc gctggggaat tacagtctga cagtccgggc ggtaaatgcc
    10141 cgggggcagc agggcgatcc ggcgtcggta tcgttccgga ttgcggcacc ggcagcgcct
    10201 gtcactattg aactgatacc ggggtatttt cagataacgg cggtcccgaa actggctgta
    10261 tacgacccga cggtgcagtt tgagttctgg ttttcggaaa agcggattgc ggatatcagg
    10321 caggttgaaa ccagcgcccg ctatcttggc acggcgctgt actggatagc cgccagtatc
    10381 aatatcaggc cgggccatga ttattatttt tacgttcgca gtgtgaacac cgttggcaaa
    10441 tcggcatttg tggaggccgt cggtcgggcg agcgatgatg cggaaggtta tctgagtttt
    10501 tataaagggt tgatcaataa cacgcatctc ggcaaggagt tgtggacgca gattgataac
    10561 ggtcagcttg cgccggacct gactgaaatc aggacgtcca ttacgaatgt cagcaatgaa
    10621 atcacgcaaa ccgtcaataa aaaactggaa aatcagagtg ctgcaatcca gcagatacag
    10681 aaagttcagg ttgatacaaa taataacctg aacagcatgt gggctgtgaa gctgcaacag
    10741 atgaaggacg gacgccttta tattgcgggt atcggtgccg gtattgagaa tacgccagca
    10801 ggaatgcaga gtcaggtgct gctggcggca gacaggattg cgatgattaa tcctgcgaat
    10861 ggcaacacaa agccgatgtt tgttggtcag ggcgatcaga tattcatgaa cgacgtgttc
    10921 ctgaaacgcc tgacggctcc gaccattacc agcggcggta atcctccggc attttccctg
    10981 acacctggcg gacggctgac ggcgaaaaat gccgatatca gcggtaacgt gaacgcgaac
    11041 tccgggacgc tcaacaacgt cacgattaat aagaactgtc gggttctggg aaaattgtcc
    11101 gcgaaccaga ttgaaggcga tctcgttaaa acagtgggca aacctttccc acgggactcc
    11161 cgggcaccgg agaggtggcc atcagggacc attaccgtca gggtttatga cgatcagccg
    11221 tttgatcggc aaattgttat tcccgcggtg gcgtttcgcg gtgctaaaca tgagcggaag
    11281 aataacaata tttattcgtc atgcagcctg atagtgaaga aaaacggtgc tgaaatttat
    11341 aaccgaacga ccctggataa tacgctgata tatacgggtg ttattgatat gcctgccggt
    11401 cacggtcaca tgacgctgga gttttctgta tcggcatggc tggtaaatgg ctggtatccc
    11461 acagcaagta tcagcgattt gctggttgtt gtgatgaaga aagccactgc aggcatcacg
    11521 attagctgaa ttttataacc cagatacggg caccagaaat ggtgcctttt ttattgcaga
    11581 aaagcgagag gtaattatgc gtaaagtttg tgcagccatt ttgtccgcag ccatctgtct
    11641 ggctgtatcc ggtgcgcctg catgggcgtc tgaacatcag tccacgctga gcgccgggta
    11701 tcttcagccc catactgata tgccaggcag cgatgacctg aagggcatta acgtgaaata
    11761 ccgttatgag tttacggaca cgttggggct ggtgacgtca ttcagctatg ccaacgctga
    11821 agatgagcaa aaaacgcatt acagcgatac ccgctggcat gaggattccg tgcgtaaccg
    11881 ctggttcagc gtgatggcgg ggccgtctgt gcgcgtgaat gaatggttca gcgcgtatgc
    11941 gatggcgggc gtggcttaca gccgtgtgtc gaccttctcc ggggattatc tccgcgtaac
    12001 tgacaacaag gggaaaacgc acgatgtgct gaccgggagt gatgacaacc gccacagcaa
    12061 cacgtctctg gcgtgggggg ctggcgtgca gtttaacccg accgaatccg tggccattga
    12121 ccttgcttat gaaggttccg gcagtggcga ctggcgcact gacggtttca tcgtgggtgt
    12181 cggttataag ttctgattag ccaggtaaca cagtgttatg acagcccgct ggttcaggcg
    12241 ggctttttgt ggggtgaata tggcagtaaa gatttcaggt gtactgaaag atggggcggg
    12301 taaacctgtc gtaaattgtg cgattgaact gcgggccaga agaaccagtc cgaccgttgt
    12361 ggcacacgtt gttgccactt gcgtgacgga caataacggt gcttatgtga ttgaggctga
    12421 gccggggtat tacgaggttg cgcttcactg taacggctgg cagccaaccc gtgtcgggga
    12481 tattgatgtg gcaccgactg atgcaccggg gacactgaac gcgtttctga atgcaccaaa
    12541 ggatggtgat ttacgtccgg aggtgatgaa
//
LOCUS       DADMJB010000127        12054 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.127, whole genome shotgun sequence.
ACCESSION   DADMJB010000127 DADMJB010000000
VERSION     DADMJB010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12054)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12054)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12054
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.127"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            16..192
                     /locus_tag="JN078_003064"
     CDS             16..192
                     /locus_tag="JN078_003064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001322497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HAY9042189.1"
                     /translation="MSALFFFNAVCIVSDNLLIIESFGEMAYNISYLTRVPGTNTLLA
                     CCCLLRPEEVNSEY"
     gene            182..355
                     /locus_tag="JN078_003065"
     CDS             182..355
                     /locus_tag="JN078_003065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module toxin, GnsA/GnsB family"
                     /protein_id="HAY9042190.1"
                     /translation="MNIEELKKQAETEIADFIAQKIAELNKNTGKEVSEIRFTAREKM
                     TGLESYDVKIKIM"
     gene            complement(404..1476)
                     /locus_tag="JN078_003066"
                     /pseudo
     CDS             complement(404..1476)
                     /locus_tag="JN078_003066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415512.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
     gene            complement(1548..4292)
                     /gene="torS"
                     /locus_tag="JN078_003067"
     CDS             complement(1548..4292)
                     /gene="torS"
                     /locus_tag="JN078_003067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415513.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TMAO reductase system sensor histidine
                     kinase/response regulator TorS"
                     /protein_id="HAY9042191.1"
                     /translation="MNLTLTRRLWMGFALMALLTLTSTLVGWYNLRFISQVEKDNTQA
                     LIPTMNMARQLSEASAWELFAAQNLTSADNEKMWQAQGRMLTAQSLKINALLQALREQ
                     GFDTTAIEQQEQEISRSLRQQGELVGRRLQLRQQQQQLSQQIVAAADEIARLAQGQAN
                     NATTSAGATQAGIYDLIEQDQRQAAESALDRLIDIDLEYVNQMNELRLSALRVQQMVM
                     NLGLEQIQKNAPMLEKQLNNAVKILQRRQIRIEDPGVRAQVATTLTTVSQYSDLLALY
                     QQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDTIELRNQHGLAHLEKASARGQYSLL
                     LLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIG
                     RLMDAFRSTVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA
                     MSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAG
                     GKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVI
                     TNLLSNALRFTDEGQIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKRG
                     GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGL
                     RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVD
                     GITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYL
                     QLQVNNDQSLDVSQLNEDAQLMGTEKIHEWLVLFTQHALPLLDEIDIARASQDSEKIK
                     RAAHQLKSSCSSLGMRIASQLCAQLEQQPLSAPLPHEEITRSVAALEAWLHKKDLNAI
                     "
     gene            4375..5364
                     /gene="torT"
                     /locus_tag="JN078_003068"
     CDS             4375..5364
                     /gene="torT"
                     /locus_tag="JN078_003068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TMAO reductase system periplasmic protein TorT"
                     /protein_id="HAY9042192.1"
                     /translation="MRVLLFLLLSLFMLSAFSADNLLRWHDAQHYTVQASTPLKAKRA
                     WKLCALYPSLKDSYWLSLNYGMQEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF
                     PDLQKQVANLPVIELVNALDDPLVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMP
                     GPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG
                     TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMIWQGELAVEQA
                     IRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK"
     gene            complement(5337..6029)
                     /gene="torR"
                     /locus_tag="JN078_003069"
     CDS             complement(5337..6029)
                     /gene="torR"
                     /locus_tag="JN078_003069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator TorR"
                     /protein_id="HAY9042193.1"
                     /translation="MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN
                     QPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTK
                     PLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTR
                     AEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQ
                     HGECYFLAADVC"
     gene            6149..7321
                     /gene="torC"
                     /locus_tag="JN078_003070"
     CDS             6149..7321
                     /gene="torC"
                     /locus_tag="JN078_003070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentaheme c-type cytochrome TorC"
                     /protein_id="HAY9042194.1"
                     /translation="MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTST
                     TEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQ
                     TFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQM
                     KVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAK
                     GDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGD
                     VQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHG
                     APEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDIAGKAHGDKKEEK"
     gene            7321..9893
                     /gene="torA"
                     /locus_tag="JN078_003071"
                     /pseudo
     CDS             7321..9893
                     /gene="torA"
                     /locus_tag="JN078_003071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415517.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
     gene            9890..10489
                     /gene="torD"
                     /locus_tag="JN078_003072"
     CDS             9890..10489
                     /gene="torD"
                     /locus_tag="JN078_003072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD"
                     /protein_id="HAY9042195.1"
                     /translation="MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLL
                     KSEPPLAAAVNELENCIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQ
                     EIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTA
                     LWQWLPEFAARCHQYDSFGFYAALSQLLLVLVECDHQNK"
     gene            complement(10582..10887)
                     /gene="cbpM"
                     /locus_tag="JN078_003073"
     CDS             complement(10582..10887)
                     /gene="cbpM"
                     /locus_tag="JN078_003073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone modulator CbpM"
                     /protein_id="HAY9042196.1"
                     /translation="MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWV
                     FDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP"
     gene            complement(10887..11807)
                     /gene="cbpA"
                     /locus_tag="JN078_003074"
     CDS             complement(10887..11807)
                     /gene="cbpA"
                     /locus_tag="JN078_003074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curved DNA-binding protein"
                     /protein_id="HAY9042197.1"
                     /translation="MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEA
                     RFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIF
                     GQHARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTL
                     NVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVS
                     PWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMP
                     PKPDENTAALWQQLADAQSSFDPRKDWGKA"
BASE COUNT         2894 a         3094 c         3191 g         2875 t
ORIGIN      
        1 cgtggagcct tttttatatc tgccttattt ttcttcaacg ctgtatgtat agtaagcgat
       61 aacctgttga ttattgaatc tttcggggag atggcttata acatttctta cctgaccagg
      121 gtaccgggaa ccaacacctt actggcgtgt tgctgtcttt taagaccaga agaggttaac
      181 agtgaatatt gaagagttaa aaaaacaagc cgaaacggaa atcgccgact ttatcgcgca
      241 aaaaatcgcc gagctgaaca agaatacagg gaaagaagtc tctgaaattc gcttcaccgc
      301 acgagaaaaa atgaccgggc ttgaaagtta tgatgtcaaa atcaaaataa tgtgattttg
      361 tgaacatcac cccgtgcgag gtgatgttcc gcttgttgct aatttagtga tcaatcattg
      421 gcgcttgtgg aattaagcgt cggtacaatt cctccggcac cgggctttgc catactcccg
      481 catacattgc gtaaccaatc accgcgaaca taatccccag aaccagtagc gtcattaacc
      541 agccagacaa cgcaaaagct tttttatttg ccgcaggttt ttgcagtgaa aaggtcaatg
      601 ttgaggctac cggacatgac tctacgcaag tcatacagcc ggtacattcc actgttcgta
      661 cctgaattaa tttatctacc gggatccgtg atgggcaatt ttttgcgcat ttgccacagc
      721 cgatacaact ttcggcattg cgacgaatct taaacggcga taatagcgaa accacgccca
      781 tcagcgcgcc atatgggcaa agataacgac accaggcatg gcgaataaac aggctggcaa
      841 tcagcaaaac ggtcacgctg attaatgtcg cggtccccat atgacgaaag aaatcgagca
      901 tttttacgtc catcaccacg ctgtagggcg acaacataaa atagtgaatc gcctgagcgg
      961 gcatcaataa cgcgatatag agaaaaaaac tcaacagcaa atacttcacg ccgcgcagag
     1021 gaatatccag ccagcgggga aggacacatt gccgaccaaa cagtttgtta ccgagatcgc
     1081 cgattaattc agaaagcgta ccaaccgggc ataaccatga gcaaaaggcc tttttgagta
     1141 atagactgat gacgataaaa gcgaccaata acagcatcgc ggagcgtgga cggacggtaa
     1201 ctgacctgtt gtaaggctat atttcagatt catcagaccg gcaatcggta gccagccttc
     1261 gatacctccc ggtctggcga caaatgtcgt gctacttgcc gtttcgtaat agcgcaccca
     1321 ataccagaac gtgatggcaa tataaatatt cattgccaac agtaataatt gcgtcgcttt
     1381 acgccaggtc gtggcattgc gccagtcatt ccacggtaat ttgccgcccg tcgtgcctgg
     1441 ccgccgctgc cagcgggttc tttttttctc tgccatgatt ttgtcagtcc gttaagttgc
     1501 ataccaaatg ccactatttt agttgttctt aactggctga tattgattca aatcgcgttc
     1561 aggtctttct tatgcaacca tgcttccaga gcggcaacac tgcgtgtaat ttcttcgtgt
     1621 ggaagggggg cagataatgg ctgctgctcc agttgtgcgc atagctggct ggcgatacgc
     1681 attcccaaac tcgagcaact gctttttagc tgatgcgcgg cacgctttat tttctcgcta
     1741 tcctgactgg cgcgggcaat gtcgatttca tcgagaagcg gcagggcatg ttgtgtaaat
     1801 aataccagcc attcgtggat cttctccgtc cccattaact gagcatcttc attgagttgc
     1861 gatacatcca gcgattgatc gttattgact tgcagttgga gatagtgcgc cagtaactga
     1921 ccgagcactt cacgcggcac cggtttaggg ataatcccgc ggaataatga actggtacgc
     1981 tggcgcagcg tttcgtcaat gacatgggcg ctaaagccaa tcaaaaccag cgacggatat
     2041 tgctgtgcca gttgtcgggc aagcgtaatg ccgtcgacat ccggcagatc aaaatccacc
     2101 agtgcggcag caaacggttc gctattttgc agtgtctcta aagcctgcgc ggcattgcca
     2161 acagcaacaa cctgcgcacc actggtgttc agcatctcaa cggtaattcg ctgggttagc
     2221 gggttatctt caattaacag caaacgtaaa ccgtcaagac gcaccgcctg attgactgtt
     2281 tttggcacgg gtgccgtggc aacacgtaac ggcaagcgta aacaaaaaca gcttccaacc
     2341 tccggcgtgc tggtggcgct cagttcgccg cccatcgcct gggccagacg gctactgata
     2401 gtcagtccca gcccggtgcc gccgcgtttg ccgcttacct gcacaaatgg ctggaagatt
     2461 tctgccagtt tcgcgggatc aataccgcag ccgctgtctt ccacttcgac cagccattgc
     2521 tcgccatcag tgcggctacg taaaacgatc tgcccttcgt cagtaaaacg cagggcgttg
     2581 ctcaacaggt tggttataac ctgacgaata cgtcgcggat cgcccattaa cgcggtcggt
     2641 acatcgtcgg caattgctgt tgccaggcga atcgggcgac ctttcacccg tccgctcatt
     2701 aattgcaggg tactttccag cagcgggcgc ggttcaaagg gctcatcgct gaccgaaaca
     2761 ttcttgccac ctgcttcgat agccgaataa tcgagaatat cgttgaggat ggtcagcaac
     2821 gattcgccag agtcggtaat cgcccgcaaa tcatcacgct gggcgttaag tgcggggtta
     2881 tctgccagca gttgagcagt gccgagaata ccgtacagcg gtgtgcggat ctcatggctc
     2941 atcgccgcca gaaaggccga ttttgcctgg ctggcttttt ctgcttccgc ccgtgcctgt
     3001 cggtgttcta tcaccagttc ctgcaattca gctgtacgcg ctttgacctg cgccgccagc
     3061 tgttcacggt ggcgattcag tgcatgaaca gtgctgcgaa acgcatccat cagccgcccg
     3121 atggtatcca gctcccgtac gccagcggtt tccgggaaag gggagtcaat atcaccgtcc
     3181 agcagccgtt gcagcgcctg cgtttgttcg gcaagtggac gcgtgactga gcgataaacc
     3241 acgcgccaaa ggatcagaat cagtgcgcaa agtgaaacca tccccagcaa taacaggctg
     3301 tattgcccgc gtgcactggc tttttccaga tgcgccagtc cgtgctgatt acgcagctca
     3361 atggtgtcga ccagctgact gacttcgcta ctaaactgcg cgaactgggc gatgttattt
     3421 tgtgcgagag tttgtaggtg attgctgatt tcactgtcct gctgatacag cgccagcaaa
     3481 tcgctatatt ggctaacggt agttaacgtt gttgcgacct gcgcacgaac acccggatct
     3541 tcaatgcgta tttgccgacg ttgcagaatt ttcaccgcat tattgagctg cttttccagc
     3601 attggtgcat ttttctggat ctgctccagc cccagattca tcaccatttg ctgcacccgc
     3661 agagcgctaa ggcgcagttc attcatctgg ttaacatact caagatcgat atcaatcagc
     3721 cgatcgagtg cactttcagc agcctgacgc tgatcttgtt cgatcaaatc gtaaatcccg
     3781 gcctgggtcg ctccagcgga agttgtcgca ttattcgcct gaccttgcgc caggcgtgcg
     3841 atctcatcgg cggcagcgac tatctgctga ctgagttgct gttgttgctg gcgtagttgc
     3901 agacgccgcc ccaccagttc cccttgctga cgtaacgaac gggagatctc ctgctcctgt
     3961 tgttcaatag cggtggtatc aaaaccttgt tcccgtaacg cttgcagcaa cgcattaatc
     4021 ttcaggcttt gtgcggtgag cattcgcccc tgcgcctgcc acatcttttc gttatcggca
     4081 ctggtcaggt tctgcgcggc gaaaagttcc caggcgctgg cttcgctcaa ctggcgcgcc
     4141 atattcatgg taggaatcaa tgcctgagtg ttgtcttttt ccacctggct gataaagcgc
     4201 aggttgtacc atcccaccag ggtactggtc agggttaaca gcgccatcag ggcaaagccc
     4261 atccagagtc ttcgggtcag ggttaaattc acggtcggtg cactttaggt gaaaaaggtt
     4321 gagtcgcaaa gcagaatgca tctagcataa agccttatta ttgattaggc tatcatgcgc
     4381 gtactgctat ttttacttct ttcccttttc atgttatcgg cattttcggc tgataacctg
     4441 ttgcgctggc atgatgcgca gcattacacg gtgcaagcct ctacgccgct taaagccaaa
     4501 cgcgcatgga aactgtgcgc gctttatccc agcctgaaag attcatactg gttatcgttg
     4561 aactatggta tgcaggaggc aggcggctac agccagttgg ctacccagca agcacaaatc
     4621 gaccagtgta aacagtgggg cgcagaggcc attttgctcg gtagtagcac tacgtcattt
     4681 cccgacctgc aaaagcaggt agcaaatctg ccggtgatcg aactggtaaa tgctcttgat
     4741 gatcccctgg tgaaaagccg cgttggtgta ccctggtttc agatgggcta tcaacctggg
     4801 cgatatttgg tgcaatgggc gcacggtaaa ccactgaacg tgctgttgat gcccggaccc
     4861 gataatgccg ggggcagtaa agagatggtc gagggttttc gcgcagccat tgccggaagc
     4921 ccggtgcgta ttgttgatat tgcgcttggt gataacgata ttgaaatcca gcgtaacctg
     4981 ttgcaggaga tgctggaacg ccacccagaa atcgacgtcg ttgccggaac ggccattgcg
     5041 gcagaggcgg caatgggtga agggcgtaac ctgaaaacgc cgcttaccgt ggtgtcgttt
     5101 tatctttcac atcaggtgta tcgcgggctg aagcggggaa gagtgattat ggctgccagc
     5161 gatcaaatga tctggcaggg ggaactggcg gttgagcagg ccatcaggca attacagggg
     5221 caatcggtgt ctgataatgt cagcccaccg attttagttc tgacgccgaa aaatgccgac
     5281 cgtgaacata ttcgccgctc gctgtcacca gggggatttc gtccggtcta tttttatcag
     5341 cacacatcag cggctaagaa ataacattca ccatgttgcg tcaccagtaa atccgcgctg
     5401 agtttatgac gtaaacgacg aattaacaca tcgacggtgc gcaggtcagg gttttccacc
     5461 cgacgcgcag aaagcatacg tagcagacgt tcacggctga gaatttcgcc cggattcgtc
     5521 acaaatgcca ccaacatttc atactctgcg cgggtcagtt taatcggctc gccatcccgc
     5581 tccagcgtat ggcgcgacac attcaggcaa taaccggcaa agcgatagca gttgtcctga
     5641 gtgtgcggtt gagcttgtcg cgcgaggtcg attcgccaga gcagattttt cacccgtact
     5701 accagttcgc gcagttccag cggtttggtg acgtaatcgt ctgcgcccat ttccagccca
     5761 acaatacggt caatccgatc gctgcgtccg gtaaccagaa taatccccac cgttgagcgt
     5821 tctcgcaggg cgcgggttaa catcaggcca ttttcatcgg gtaagttgat atccagcaga
     5881 attaaatcta ccggctgatt ctgcataatt tcccgcagcc cggcaccgct cgctgtaacg
     5941 gaaacggtat acccctcctg agtgaagtaa gattgtaatc gcgcctgggt aaccggctca
     6001 tcttcaacaa taacaatgtg atgtggcatc agagggtttt actcattctg ttcatattct
     6061 gccgtaagcc gttcatcctg accagtgccg ctgttcatat ttgctcatta agatcgcttc
     6121 actaaaccat aattttacag gggctattat gcggaaactc tggaacgcgc tacgccgacc
     6181 cagtgctcgt tggtcggtac tggcgctggt cgcaattggg attgtgattg gcattgcgct
     6241 gattgtattg ccacacgttg ggatcaaagt caccagcaca accgaatttt gtgtcagttg
     6301 ccacagtatg caaccggtgt atgaagaata taaacagtcg gtgcatttcc agaacgcctc
     6361 cggcgtgcga gctgaatgcc atgactgtca tatcccgccg gatattccag gcatggtgaa
     6421 gcgcaaactg gaagcgagca atgatatcta ccagaccttt attgctcact ccattgatac
     6481 acctgaaaaa ttcgaagcca aacgcgcgga acttgccgag cgtgaatggg cgcgaatgaa
     6541 agaaaacaac tcggcaacct gccgctcctg ccataactac gatgcgatgg atcatgcgaa
     6601 gcagcatcct gaagcggcac gtcagatgaa ggtggcagcg aaagataatc aatcctgcat
     6661 cgactgtcat aaaggtattg cccaccagtt accggatatg agtagcggct tccgtaagca
     6721 gttcgatgag ctgcgcgcca gtgctaatga cagtggtgac acgctgtact ctattgatat
     6781 taagccaatt tatgcggcga aaggcgataa agaagcctct ggttctctgc tgcctgcttc
     6841 ggaagtgaaa gtccttaaac gtgacggcga ctggctgcaa attgaaatta ccggctggac
     6901 ggaaagcgcc ggacgtcagc gtgtactcac ccaattccca ggtaaacgca tctttgttgc
     6961 ctcgattcgt ggtgatgtgc agcagcaggt aaaaacgctg gagaaaacca ccgttgccga
     7021 caccaatacc gagtggagca agttgcaggc cactgcgtgg atgaagaaag gtgatatggt
     7081 gaacgatatc aaaccgatct gggcttatgc ggattcgttg tacaacggca cctgtaacca
     7141 gtgccacggc gcaccggaaa tctctcactt tgatgctaac ggctggattg gcacgctcaa
     7201 cggcatgatt ggctttacca gtctcgataa acgtgaagaa cgcaccttgt tgaaatatct
     7261 gcaaatgaat gcgtctgaca tcgcaggtaa ggctcacggc gataagaagg aagaaaaata
     7321 atgaacaata acgatctctt tcaggcatca cgtcggcgtt ttctggcaca actcggcggc
     7381 ttaacagtcg ccgggatgct ggggccgtca ttgttaacgc cgcgcagtgc gactgcggcg
     7441 caagcggcgg atgtcatctc gaaagagggc attcttaccg ggtcgcactg gggggctatc
     7501 cgcgcgacgg tgaaggatgg tcgctttgtg gcggcaaaac cgttcgaact ggataaatat
     7561 ccgtcgaaaa tgattgccgg attgccggat tgccggattg ccggattgcc ggattgccgg
     7621 atcacgtaca caacgcggcg cgtattcgtt atccgatggt acgcgtggac tggctgcgta
     7681 agcgccatct cagcgatacc tcccagcgcg gtgataaccg ttttgtgcgc gtgagctggg
     7741 atgaagccct cgacatgttc tatgaagaac tggaacgcgt gcagaaaact cacgggccga
     7801 gtgccttgct gaccgccagt ggttggcaat cgacggggat gttccataac gcttcgggga
     7861 tgctggcgaa agctattgcc ttgcatggta atagcgttgg tacgggcgga gattactcta
     7921 ccggtgctgc gcaggtgatc ctgccgcgcg tagtcggttc gatggaagtg tatgaacagc
     7981 aaacctcctg gccgctggta ttgcagaaca gcaaaaccat tatgctgtgg ggctccgatt
     8041 tgctgaaaaa ccagcaagcg aactggtggt gcccggatca cgatgtttat gaatattacg
     8101 agcaactaaa agcgaaagtc gccgccggtg aaattgaggt catcagcatc gatccggttg
     8161 tcacatccac ccatgagtat ctggggcgcg agcatgtgaa gcacattgcg gttaacccgc
     8221 aaactgacgt gccgctgcaa ctggcgctgg cgtatacgct gtacagtgaa aacctgtacg
     8281 acaaaaactt cctcgctaac tactgtgtag gttttgagca gttcctgccg tatctgctgg
     8341 gtgagaaaga cggtcagccg aaagatgccg catgggctga aaaactgacc ggcattgatg
     8401 ccgaaaccat tcgtgggctg gcgcggcaga tggcggcgaa cagaacgcaa attattgctg
     8461 gctggtgcgt gcagcgtatg cagcacggtg aacagtgggc gtggatgatt gtggttctgg
     8521 cggcgatgct ggggcaaatt ggcctgccag gtggtggttt tggttttggc tggcactaca
     8581 acggcgcagg cacgccgggg cgtaaaggcg ttattctgag tggtttctcc ggctctacgt
     8641 cgattccgcc tgttcacgac aacagtgact acaaaggcta cagcagcacc attccgattg
     8701 cccgttttat cgatgcgatc ctcgaaccgg ggaaagtgat caactggaac ggtaaatcgg
     8761 taaaactgcc gccactgaaa atgtgtattt ttgccggaac taacccattc catcgccatc
     8821 agcagatcaa ccgcattatt taaggctggc gcaagctgga aacggttatc gccatagata
     8881 accagtggac ctcaacctgc cgctttgccg atatcgtact gcctgcgacc acgcagtttg
     8941 agcgtaacga tctcgaccag tacggcaacc actccaaccg tggcattatc gccatgaaac
     9001 aggtggtgcc gccgcagttc gaggcgcgca acgactttga tattttccgc gagctgtgcc
     9061 gtcgctttaa tcgcgaagaa gcctttaccg aagggctgga cgaaatgggc tggctgaaac
     9121 gcatctggca ggaaggtgta caacaaggca aaggacgcgg cgttcatctg ccagcgtttg
     9181 atgacttctg gaataacaaa gagtacgtcg agtttgacca tccgcagatg tttgttcgcc
     9241 accaggcatt ccgcgaagat ccggatctcg aaccgctggg cacgccgagt ggcctgattg
     9301 agatctactc gaaaaccatc gccgatatga actacgacga ttgtcagggg catccgatgt
     9361 ggtttgagaa aatcgaacgc tcccacggtg ggcccggctc gcagaagtat ccgttgcatc
     9421 tgcaatctgt gcatccggat ttccgacttc actcgcagtt atgtgagtcg gaaactctgc
     9481 gtcagcaata tacggtagcg ggtaaagagc cagtattcat taacccgcag gatgccagcg
     9541 cgcgcggtat tcgtaacggt gatgtggtac gcgtctttaa cgctcgcggt caggtgttgg
     9601 caggggcagt agtttctgac cgctatgcac ccggcgtggc acgaattcac gaaggggcat
     9661 ggtacgatcc agataaaggc ggcgagcctg gtgcgctgtg caaatacggt aaccccaacg
     9721 tgctgaccat cgacatcggt acttcgcagc tggcgcaggc gaccagtgcg cacactacgc
     9781 tggtggaaat tgagaagtac aatggagcag tggagcaggt gacggcgttt aacggccctg
     9841 tggagatagt ggcgcagtgc gaatatgttc ccgcgtcgca ggtgaaatca tgaccacgct
     9901 gacagcacaa cagattgcct gtgtttacgc ctggctggcg cagttgttct cccgtgaact
     9961 ggacgatgaa caactgacgc aaatcgccag tgcgcagatg gcggaatggt tttcgttgct
    10021 gaaaagcgaa ccgccgctgg ctgcggcggt gaatgagctg gaaaactgta ttgccacgct
    10081 gacagtacgt gacgatgccc gtctggaact ggccgctgac ttttgcggcc tgtttttgat
    10141 gactgataag caggcggcgc tgccgtatgc atcggcctac aaacaggacg agcaagagat
    10201 taaacgcttg ttagttgagg cagggatgga aaccagcggc aatttcaacg aaccggcaga
    10261 ccatctggcg atctatctcg agttgttgag tcatctgcat ttttcgctgg gagaggggac
    10321 cgttcctgcg cgaagaatcg acagtttgcg gcaaaaaaca ctgacggcgc tgtggcaatg
    10381 gttaccagag tttgctgcgc gttgccatca gtatgacagc tttggttttt acgcggcact
    10441 aagccagtta ttgctggtgt tagtggagtg cgaccaccaa aacaaataac gtcgtttatg
    10501 cgcctgaaaa gacgcgttta gcgtcgcatc aggcattatg gcgcagttgc cggatgcgtc
    10561 atcacatccg gcaaacacac atcacggatg agctacaaac cgggaaagcc gctggcgtag
    10621 caggcggttt tcctgcttca ggtgtgcaat atcatccatt aacgtcagcg ccaccgcgat
    10681 ccccggccag tccagagcca gttcatgacg caggcgtacc gcgcgttgca ccacaatggc
    10741 ggcatggtcg tcaaataccc aggttgtttc ctggatctca cgcggttcaa ccacccccaa
    10801 accgacaatt tcattcaact cctcttcaga gatgccggta tgcaggcaaa attcggtaat
    10861 agtaaaagtc accgtaacat tagccatcat gctttccccc aatctttacg tggatcaaaa
    10921 gacgactggg cgtctgccag ttgctgccac agcgcggcag tgttttcatc cggtttcggc
    10981 ggcatcacga ttttcagtac cgcatacaga tcgccggtct gttttttgct caccagacct
    11041 ttgcctttaa cgcgcaatcg ttgcccggcc tggctgcctg gcgggatagt cagcaaaatg
    11101 ctttctttca gtgttggaac ggtgacttta gcacccagcg ccgcttccca cgggctaacc
    11161 ggcaccacaa tttccagatc ctggccgaca atatcgaaca gcggatgtgg cgcaatatga
    11221 atcaccagcc acaaatcgcc atttggacca ccgttttcgc ccggcgtccc ctggcctttc
    11281 agacggatgc gttgaccatt gccgacgccc gccgggatct tcacattcag cgttttcggg
    11341 atttcctgtt cgatcatgcc aaaggcgtta taaaccggca ggttatagct gatggtacgc
    11401 ttatgctcag tcagcgtttc ttcgaggaat accgccactt cgatttcaat atcgtggccg
    11461 cgtgcggcgg ggcgttgacg gctctggcgg gcatgctgac cgaaaattga cgagaagata
    11521 tcgtcaaaat cttcggcatt aaaactctga ccgtcgccat gatggaactg acggttaaat
    11581 tgcggatcgt tgcgatgttg ccacatctga tcatactcag cgcgacgttg ttcatcactt
    11641 aacacttccc aggcttcagc gacctctttg aagcgggctt cggcatccgg ttctttgctg
    11701 acatcaggat ggtatttacg ggccagtcga cgataggcgg tcttgattgt cttgagatcg
    11761 tccgtcggtt tcacgcccat gatggcgtaa taatccttta attccatagc gttatctcgc
    11821 gtaaatcaac acaaattgaa ggaacccctg taaggtaact cctataagtg tagggtaatc
    11881 ctcaaaattt catatgccaa cacagaatat gttattgaaa tcatcgtgga gaggaggtcg
    11941 ccatcaatat gggttgctga acatatttta aacaggtgaa aaagggtgag cgatttttga
    12001 tagttgaacc aggcacttta agtttaacta gggcgtcatt atttattaaa tttt
//
LOCUS       DADMJB010000128        12040 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.128, whole genome shotgun sequence.
ACCESSION   DADMJB010000128 DADMJB010000000
VERSION     DADMJB010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12040)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12040)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12040
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.128"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..410)
                     /locus_tag="JN078_003075"
     CDS             complement(<1..410)
                     /locus_tag="JN078_003075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311911.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HAY9042198.1"
                     /translation="MPRLTAKDFPQELLDYYDYYAHGKISKREFLNLAAKYAVGGMTA
                     LALFDLLKPNYVLTTQVEFTDPEIVAEYITYPSPNGHGEVRGYLVKPAKMSGKTPAVV
                     VVHENRGLNPYIEDVARRVTKAGYIALAPDGLSSV"
     gene            566..1606
                     /gene="gpr"
                     /locus_tag="JN078_003076"
     CDS             566..1606
                     /gene="gpr"
                     /locus_tag="JN078_003076"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glyceraldehyde 3-phosphate reductase"
                     /protein_id="HAY9042199.1"
                     /translation="MVWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALES
                     QRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDM
                     WPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSG
                     KALYVGISSYSPERTQKMVELLHEWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVG
                     CIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQ
                     RGQSMAQMALSWLLKDDRVTSVLIGVSRAEQLEENVQALNNLTFSTEELAQIDQHIAD
                     GELNLWQASSDK"
     gene            complement(1646..2140)
                     /locus_tag="JN078_003077"
     CDS             complement(1646..2140)
                     /locus_tag="JN078_003077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HAY9042200.1"
                     /translation="MERFLENAMYASRWLLAPVYFGLSLALVALALKFFQEIIHVLPN
                     IFSMAESDLILVLLSLVDMTLVGGLLVMVMFSGYENFVSQLDISENKEKLNWLGKMDA
                     TSLKNKVAASIVAISSIHLLRVFMDAKNVPDNKLMWYVIIHLTFVLSAFVMGYLDRLT
                     RHNH"
     gene            2331..3215
                     /gene="yghA"
                     /locus_tag="JN078_003078"
     CDS             2331..3215
                     /gene="yghA"
                     /locus_tag="JN078_003078"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(+)-dependent aldehyde reductase"
                     /protein_id="HAY9042201.1"
                     /translation="MSHLKDPTTQYYTGEYPKQKQPTPGIQAKMTPVPDCGEKTYVGS
                     GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKA
                     VLLPGDLSDEKFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAIN
                     VFALFWLTQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGQAKQVA
                     EKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQE
                     SSYVTAEVHGVCGGEHLG"
     gene            complement(3487..3912)
                     /gene="exbD"
                     /locus_tag="JN078_003079"
     CDS             complement(3487..3912)
                     /gene="exbD"
                     /locus_tag="JN078_003079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HAY9042202.1"
                     /translation="MAMHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVD
                     VKVNLPASTSTPQPRPEKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTI
                     FFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEETAKAK"
     gene            complement(3919..4653)
                     /gene="exbB"
                     /locus_tag="JN078_003080"
     CDS             complement(3919..4653)
                     /gene="exbB"
                     /locus_tag="JN078_003080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HAY9042203.1"
                     /translation="MGNNLMQTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSK
                     SVEFFNQKRRLKREQQLLAEARSLNQANDIAADFGSKSLSLHLFNEAQNELELSEGSD
                     DNEGIKERTSFRLERRVAAVGRQMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIA
                     QTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNVFARQIGGFKAMLGDVAAQVLL
                     LQSRDLDLEASAAAHPVRVAQKLRAG"
     gene            4905..6092
                     /gene="metC"
                     /locus_tag="JN078_003081"
     CDS             4905..6092
                     /gene="metC"
                     /locus_tag="JN078_003081"
                     /EC_number="4.4.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HAY9042204.1"
                     /translation="MADKKLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFESMEAKKH
                     ATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCALFPCGAAAVANSILAFVEQGD
                     HVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSIT
                     MEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDA
                     MIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEW
                     LAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLSNEELANYLDNFSLF
                     SMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFA
                     RIV"
     gene            6232..6891
                     /locus_tag="JN078_003082"
     CDS             6232..6891
                     /locus_tag="JN078_003082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HAY9042205.1"
                     /translation="MAVIQDIIAALWQHDFAALADPHIVSVVYFVMFATLFLENGLLP
                     ASFLPGDSLLILAGALIAQGVMDFLPTIAILTAAASLGCWLSYIQGRWLGNTKTVKGW
                     LAQLPAKYHQRATCMFDRHGLLALLAGRFLAFVRTLLPTMAGISGLPNRRFQFFNWLS
                     GLLWVSVVTSFGYALSMIPFVKRHEDQVMTFLMILPIALLTAGLLGMLFVVIKKKYCN
                     A"
     gene            complement(6931..7830)
                     /locus_tag="JN078_003083"
     CDS             complement(6931..7830)
                     /locus_tag="JN078_003083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003024513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HAY9042206.1"
                     /translation="MKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTP
                     VMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRLN
                     VDILQLQELLMDIGEDEHFQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILG
                     KQIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEAN
                     MSVSAFHHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSR
                     EFKRYFGVTPGEDAARMRAMQGN"
     gene            8024..9187
                     /gene="yqhD"
                     /locus_tag="JN078_003084"
     CDS             8024..9187
                     /gene="yqhD"
                     /locus_tag="JN078_003084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase"
                     /protein_id="HAY9042207.1"
                     /translation="MNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKT
                     GVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTK
                     FIAAADNYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDK
                     QAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIQDRFAE
                     GILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAM
                     HGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFF
                     EQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR"
     gene            9292..10119
                     /gene="dkgA"
                     /locus_tag="JN078_003085"
     CDS             9292..10119
                     /gene="dkgA"
                     /locus_tag="JN078_003085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-didehydrogluconate reductase DkgA"
                     /protein_id="HAY9042208.1"
                     /translation="MANPTVIKLQDGNVMPQLGLGVWQASNEEVIIAIQKALEVGYRS
                     IDTAAAYKNEEGVGKALKNASVNREELFITTKLWNDDHKRPREALLDSLKKLQLDYID
                     LYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQ
                     IELHPLMQQRQLHAWNATHKIQTESWSPLAQGGKGVFDQKVIRDLADKYGKTPAQIVI
                     RWHLDSGLVVIPKSVTPSRIAENFDVWDFRLDKDELGEIAKLDQGKRLGPDPDQFGG"
     gene            10319..11245
                     /locus_tag="JN078_003086"
     CDS             10319..11245
                     /locus_tag="JN078_003086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708829.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjP/YqhG family protein"
                     /protein_id="HAY9042209.1"
                     /translation="MKIILLFLAALASFTVHAQPPSQTVEQTVRQIYQNYKSDASTPY
                     FGETGERAITSARIQQALTLNDNLTLPGNIGWLDYDPVCDCQDFGDLVLESVAITQTD
                     ADHADAVVRFRIFKDDKEKTTQTLKMVAENGRWVIDDIVSNHGSVLQAVNSENEKTLA
                     ALASLQKEQPEAFVAELFEHIADYSWPWTWVVSDSYRQAVNAFYKTTFKTANNPDEDM
                     QIERQFIYDNPICFGEESLFSRVDEIRVLEKTADSARIHVRFTLTNGNNEEQELVLQR
                     REGKWEIADFIRPNSGSLLKQIEAKTAARLKQ"
     gene            11296..11553
                     /gene="yqhH"
                     /locus_tag="JN078_003087"
     CDS             11296..11553
                     /gene="yqhH"
                     /locus_tag="JN078_003087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein YqhH"
                     /protein_id="HAY9042210.1"
                     /translation="MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLE
                     QDMKALRPQIYAAKSEANRANTRLDAQDYFDCLRCLRMYAE"
     gene            11633..>12040
                     /locus_tag="JN078_003088"
     CDS             11633..>12040
                     /locus_tag="JN078_003088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001603762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042211.1"
                     /translation="MRRWHTCFFILLFCGFSGNVLCKESINEAIERLYQPLTSNDDIP
                     ITDEFSLDLRSNMSATPGKMTPWLNNNLLCRCVDDAFVSAEIIQSTHLNGGRTHVLLQ
                     LVIKQNRTDIHRLLGLMLVRENDNHRWLIEDIDD"
BASE COUNT         3117 a         3054 c         3002 g         2867 t
ORIGIN      
        1 acggaactta agccgtcagg tgccagggcg atataccccg ccttcgtcac tcgccgtgcc
       61 acatcttcga tatacggatt cagtccacga ttctcatgca ccaccaccac ggctggcgtt
      121 ttgccgctca tttttgcggg tttcaccaga taaccccgta cctcgccgtg accatttggc
      181 gaaggatacg tgatgtactc agcaacaatc tccgggtcgg taaactctac ctgagtcgtc
      241 agcacataat ttggcttgag caaatcaaac aacgctaatg ccgtcatccc gcccaccgca
      301 tacttcgccg caaggttgag gaactcacgt ttcgaaattt tcccgtgagc gtaatagtcg
      361 tagtaatcca acaactcttg tgggaaatct ttggcggtta aacgcggcat cgttgcattc
      421 ctcaactggt gttttttaag caaagcataa gcgcgtgttt ttgcccagtt tttcgtcact
      481 ctgtgagcca gactacggga tacgcgctgg cgaatcgcta aactagaaac attgtttcga
      541 aattgaacgg tggaaaggag aggtcatggt ctggttagcg aatcccgaac gttacgggca
      601 gatgcagtac cgctattgcg gaaaaagtgg tttacgcctg cccgcgttat cgctcggttt
      661 atggcacaat ttcggtcacg ttaacgcgct ggaatcacag cgtgcaatcc tgcgtaaagc
      721 gtttgattta ggcattacgc actttgattt agccaacaat tacgggccgc ctccaggaag
      781 cgcagaagag aactttggtc gcctgctgcg ggaggatttt gccgcttatc gcgatgaact
      841 gattatctct accaaggctg gctacgatat gtggcccggc ccttacggct ctggcggttc
      901 acgtaaatac ctgctcgcca gcctcgacca aagcctgaag cgtatggggc ttgagtatgt
      961 cgatatcttt tactctcatc gcgtcgatga aaatacgccg atggaagaaa ccgcctctgc
     1021 gctggctcat gcggtacaaa gcggtaaggc gctgtatgtc gggatctcct cttactcgcc
     1081 agagcggacg caaaaaatgg tcgagttgct gcacgagtgg aaaattccgc ttttaattca
     1141 tcaaccttcg tacaatttac tgaaccgctg ggtggataaa agcggcctgc tggataccct
     1201 gcaaaataac ggcgtgggct gtattgcctt tactcctctg gctcagggat tgctgaccgg
     1261 aaaatatctc aacggcattc cgcaagattc acggatgcat cgtgaaggga ataaagttcg
     1321 tggtctgacg ccgaaaatgc ttaccgaagc caacctcaac agcctgcgct tattgaatga
     1381 aatggcacag cagcgtggac aatcaatggc gcaaatggcg ttaagctggt tgctgaaaga
     1441 tgatcgcgtg acgtcggtat tgattggtgt cagccgcgcg gagcaactag aggagaacgt
     1501 gcaggcgctg aataatctga catttagcac cgaggagctg gcgcagattg atcagcatat
     1561 cgccgatggc gagctgaatc tgtggcaggc gtcttccgat aaatgacctg ttaataacgg
     1621 gcgcgcgaac cgcgcccgaa tcagatcagt gattatgacg agtcagtcgg tcaagatagc
     1681 ccatcacaaa tgcagagagc acaaacgtca gatggataat gacgtaccac atcagtttgt
     1741 tatccgggac atttttcgca tccataaaga cgcgcagtaa gtgaatggaa gaaattgcca
     1801 caatcgacgc tgctactttg tttttcagcg acgttgcgtc cattttcccc agccagttca
     1861 gcttctcttt gttctcggag atatccagct gcgagacgaa attctcataa ccggaaaaca
     1921 tcaccatcac cagcaaaccg ccaaccagcg tcatatccac cagcgacagc aacacgagga
     1981 tcaaatctga ttccgccatc gagaagatat tcggcagtac gtgaataatc tcctggaaga
     2041 acttcagcgc cagggcaact aacgccagcg aaaggccaaa gtacacgggg gcaagcagcc
     2101 agcgagaagc atacattgca ttttcaagaa aacgttccat acattcctgt cgtgtagtta
     2161 aaacgggcaa cagtatatcg caattgagta aacagcacgc aacagcaaat caacatatac
     2221 gttaaacctt tgtcgcataa ttctgaggtt tagggatctt cctggttccc ttatcaacgc
     2281 atcgagagcg tctaccctta aaagacgttg aacctgaagg gagaaaaaca atgtctcatt
     2341 taaaagaccc gactacgcag tattacactg gtgaatatcc caaacagaaa caaccgacgc
     2401 caggcatcca ggcgaagatg acaccggtac cggattgcgg cgagaaaacc tatgttggta
     2461 gcggtcgcct gaaagatcgt aaagcactgg tgacaggggg cgattccgga ataggtcgcg
     2521 ctgccgccat cgcttacgcg cgtgaagggg ctgacgtggc gatcagttat cttcccgtgg
     2581 aagaagaaga cgctcaggat gtgaaaaaga tcattgaaga atgcggacgc aaagccgttc
     2641 tgctgccagg cgatttaagc gatgagaaat tcgcccgttc gctggttcac gaagcgcaca
     2701 aggcgttagg cgggctggat attatggcgc tggtcgccgg gaaacaggtt gccattccgg
     2761 atattgcaga cctcaccagc gaacagtttc aaaagacctt tgccattaac gttttcgcgc
     2821 tgttctggct aacccaggaa gcgatccccc tgctaccgaa aggtgcaagt atcatcacca
     2881 cttcgtcaat ccaggcatac cagccaagtc cgcatttact ggactatgcg gctacgaagg
     2941 cggcgattct gaactacagc cgtggccagg caaaacaggt cgcggagaaa ggtattcggg
     3001 tgaatattgt cgcgccaggc cctatctgga cggcactgca aatttccggc ggacaaacgc
     3061 aggataagat cccgcagttt ggtcagcaaa cgccgatgaa gcgtgcgggg caaccggcgg
     3121 aactggcccc tgtatatgtt tatctggcaa gtcaggagtc gagctacgtc accgcagaag
     3181 tgcacggtgt gtgcggcggc gagcatttag gttaaaaaaa tgcccggttg tgaaaagcaa
     3241 ccgggcatca ttgtgaattc actcttacct gatgtggcga aaacgcctta tccgcctaca
     3301 aacgcatgaa gattcaacat gttgcaatag attttgtagg cctgataagc gtagcgcatc
     3361 aggcattgag cacctaatgc cggatgcggc gtgaacgcct tatccggcct acaaacgcac
     3421 gaagattcaa catgttgcaa tagattttgt aggcctgatg agcgtagcgc atcaggcaat
     3481 tctactttac ttcgctttgg cggtttcttc gccgaccaga cctatcttca ggtaacccgc
     3541 ctgatgcagc gtatccatta ccttcatcaa cgtctcgtaa tcgacggttt tatccgctcg
     3601 gaagaagatg gtggtgtctt tcttgccttc ggttaacgca ttcaacgccg taatcattgt
     3661 ttcatcggtg accggatcgt taccgataaa catcgagttg tctgccttca ccgacagata
     3721 aaccggtttt tccgggcgcg gctgcggcgt gctggtagaa gcaggcaagt tcaccttcac
     3781 atctaccgtc gctaacggtg ccgccaccat aaagataatc agcagaacca acatcacgtc
     3841 gataaacggc gtcacgttga tatcatgcat ttcgccgtta tcgtcgaggt tttcgttaag
     3901 atgcattgcc atcggatatt atcctgcgcg taatttttgt gcgacacgaa ccggatgcgc
     3961 agcggcgctg gcttccagat ccaggtcacg gctttgcagc aacaatacct gcgctgcaac
     4021 atcacccagc atcgctttaa agccgccaat ctggcgtgca aatacgttat agataacgac
     4081 cgcaggaatc gctgccacga ggccgattgc cgttgctaac agagcttctg cgatacccgg
     4141 cgcaacgact gccaggttag tggtctgcgt ttgcgcgata ccaataaagc tgttcatgat
     4201 gccccagacc gtaccaaaca gaccaacgaa cggagaaatc gcgccgatgg ttgccagata
     4261 gccgttaccg cggcccattt gacgacccac tgcggcgacc cgacgctcca gacggaagct
     4321 ggtacgttct ttaatacctt cgttatcgtc gctgccttct gacagttcca gctcattctg
     4381 cgcttcattg aacaaatgca ggcttaagct tttgctacca aaatcagcgg cgatatcgtt
     4441 ggcctggttt aaggaacgcg cttcagccag cagttgctgc tcgcgcttta ggcgacgctt
     4501 ctgattgaag aactctacgc tcttactgaa gaagattgcc caggtgacta cggaggccaa
     4561 aataagccca atcatcacgc acttaacgac aatatcggcg tgctgataca taccccagac
     4621 ggaaaggtct gtctgcatta aattattacc cactgtgtat ctccaggacg caagtcacaa
     4681 aatctgcgca taataatatc aaaacgacgt cgaattgata gtcattctca ttactatttg
     4741 catactgccg tacctttgct ttcttttcct tgcgtttacg cagtaaaaaa gtcaccagca
     4801 cgccatttgc gaaaattttc tgctttatgc caattcttca ggatgcgccc gcgaatattc
     4861 atgctagttt agacatccag acgtataaaa acaggaatcc cgacatggcg gacaaaaagc
     4921 ttgatactca actggtgaat gcaggacgca gcaaaaaata cactcttggc gcggtaaata
     4981 gcgtgattca gcgcgcttct tcgctggtat ttgagagtat ggaagccaaa aagcacgcga
     5041 cgcgcaatcg cgccaatggc gagttgttct atggacggcg cggaacgtta acccattttt
     5101 ccttacaaca agcgatgtgt gaactggaag gtggcgcagg ctgcgcgcta tttccctgcg
     5161 gggcggcagc ggttgctaat tcgattcttg cttttgtcga acagggcgat catgtgttga
     5221 tgaccaacac tgcctatgaa ccgagtcagg atttctgtag caaaatcctc agcaaactgg
     5281 gcgtaacgac atcgtggttt gatccgctga ttggtgccga tatcgttaag catctgcagc
     5341 caaacactaa aatcgtgttt ctggaatcgc caggctccat caccatggaa gtccacgacg
     5401 ttccggcgat tgttgccgcc gtacgcagtg tggtgccgga tgccatcatt atgatcgaca
     5461 acacctgggc agccggtgtg ctgtttaagg cactggattt tggcatcgat gtttctattc
     5521 aagccgccac caaatatctg gttgggcatt cagatgcgat gattggcact gccgtgtgca
     5581 atgcccgttg ctgggagcag ctacgggaaa acgcctatct gatgggccag atggtcgatg
     5641 ccgataccgc ctatataacc agccgtggcc tgcgcacatt aggtgtgcgt ttgcgtcaac
     5701 atcatgaaag cagtctgaaa gtggctgaat ggctggcaga acatccgcaa gtagcgcgag
     5761 ttaaccaccc tgctctgcct ggcagtaaag gacacgaatt ctggaaacga gactttacag
     5821 gtagcagcgg gctgttttcc tttgtgctta agaaaaaact cagtaatgaa gagctggcga
     5881 actatctgga taacttcagt ttattcagca tggcctactc gtggggcggg tatgaatcgt
     5941 tgatcctggc gaatcaacca gaacatatcg ccgccattcg cccacaaggc gagatcgatt
     6001 ttagcgggac cttgattcgc ctgcatattg gtctggaaga tgtcgacgat ctgattgccg
     6061 atctggacgc cggttttgcg cgaattgtat aacattgcca cttttggaca attttgcaga
     6121 catttaattg tgaaaagtct taaattgttg cgtccgggat caaggcgtcc cggacgaatc
     6181 aggagtacaa taggcagata aaggcttaaa cgctgttcca caggaaagtc catggctgtt
     6241 attcaagata tcatcgctgc gctctggcaa cacgactttg ccgcgctggc ggatcctcat
     6301 attgttagcg ttgtttactt tgtcatgttt gccacgctgt ttttagaaaa cggcctgctg
     6361 cccgcctcat ttttgccagg cgacagcttg ttgatactgg caggcgcatt gattgcccag
     6421 ggggttatgg attttctgcc tacgattgcg attctgaccg ccgcagcaag tctgggctgc
     6481 tggctaagtt atattcaggg gcgctggtta gggaatacca aaacggtgaa aggctggctg
     6541 gcacagcttc ctgctaaata tcaccagcgc gccacctgca tgtttgaccg ccacggtctg
     6601 ctggcgctgc tggctggacg ttttcttgca tttgtccgta cgctgctgcc aaccatggcg
     6661 ggaatttccg gtctgccaaa ccgccgcttc cagtttttca actggttaag tggattgctg
     6721 tgggtcagcg tggtaaccag ttttggctat gccttaagta tgattccgtt cgttaaacgc
     6781 catgaagatc aggtaatgac gttcctgatg atcctgccaa ttgccttgtt aaccgctggc
     6841 ttgttaggca tgctgtttgt ggtgattaaa aaaaaatact gtaacgcctg acgattttcc
     6901 ccgttcccgg ctgctgtacc gggaacgtat ttaattcccc tgcatcgccc gcattcttgc
     6961 cgcatcttcc cccggcgtca caccgaagta acgtttaaac tcacggctaa attgcgatgc
     7021 gctttcatag ccgacgcgca tcgctgctgc gctggccttc atgccgtcat ggatgatcat
     7081 catccgcgcc ttatgcagac ggtaattctt caaatactgc aacggcgagg tgctggtgac
     7141 agacttaaaa ttatggtgga acgccgatac gctcatgttg gcttctgccg ccagttgctc
     7201 gacgctcagg ttttcggtgt atttattctc aatccgtttc agcacgcggc taatcagact
     7261 gaagtgagtc tggcgactga ccagcgccag taacgcgccg ccgcaaggtc cggtcagcac
     7321 gtagtacaga atttcgcgga tgatctgttt gccgagaata cgcgcatcca gtggtcgctc
     7381 catcacgtcg agtaaccgct ccgccgcgca taaaatctct tctgataacg tggcggagtt
     7441 aatcccgctg gctgccatcg acggctggaa atgctcatct tcgccaatgt ccatcaacag
     7501 ttcctgtaac tgcaaaatat cgacattgag acgcaaccct gccagcggca cctctgacgt
     7561 ggcataggtt tcgcactcaa acggcaacgg caccgtcagc agcaggtatt cattggcatc
     7621 ataacgaaac acgcgttcat tgatataacc gattttatgc ccggaaaaga gaattatgat
     7681 gccaggctcg tacatcaccg gtgtacgtgc gaaaggcgtc tcaccataca acaaacgcac
     7741 atcgggcaac agttctgaca aactattttc tttatttttc agtttattaa ctttatccgc
     7801 cagcaagcgg caaatctctt cacgtttcat atcgcgtaat ttcttaggaa taatgcggca
     7861 atttgattgt gcgcaatttt gtagcatttc tccagcactc tggagaaata ggcaagacat
     7921 tggcagaaat gagcattgag agccagggcg ctggcgatca caatgaaaaa catcaggcag
     7981 atcgttctct gccctcatat tggcccagca aagggagcaa gtaatgaaca actttaatct
     8041 gcacacccca acccgcattc tgtttggtaa aggcgcaatc gctggtttac gcgaacaaat
     8101 tcctcacgat gctcgcgtat tgattaccta cggtggcggc agcgtgaaaa aaaccggcgt
     8161 tctcgatcaa gttctggatg ccctgaaagg catggacgtg ctggaatttg gcggtattga
     8221 gccaaacccg gcttatgaaa cgctgatgaa cgccgtgaaa ctggttcgcg aacagaaagt
     8281 gactttcctg ctggcggttg gcggcggttc tgtactggac ggcaccaaat ttatcgccgc
     8341 agcggataac tatccggaaa atatcgatcc gtggcacatt ctgcaaacgg gcggtaaaga
     8401 gattaaaagc gccatcccga tgggctgtgt gctgacgctg ccagcaaccg gttcagaatc
     8461 caacgcaggc gcggtgatct cccgtaaaac cactggcgac aagcaggcgt tccattctgc
     8521 ccatgttcag ccggtatttg ccgtgctcga tccggtttat acctacaccc tgccgccgcg
     8581 tcaggtggct aacggcgtag tggacgcctt tgtacacacc gtggaacagt atgttaccaa
     8641 accggttgat gccaaaattc aggaccgttt cgcagaaggc attttgctga cgctgatcga
     8701 agatggtccg aaagccctga aagagccaga aaactacgat gtgcgcgcca acgtcatgtg
     8761 ggcggcgacg caggcgctga acggtttgat tggcgctggc gtaccgcagg actgggcaac
     8821 gcatatgctg ggccacgaac tgactgcgat gcacggtctg gatcacgcgc aaacactggc
     8881 tatcgtcctg cctgcactgt ggaatgaaaa acgcgatacc aagcgcgcta agctgctgca
     8941 atatgctgaa cgcgtctgga acatcactga aggttccgac gatgagcgta ttgacgccgc
     9001 gattgccgca acccgcaatt tctttgagca attaggcgtg ccgacccacc tctccgacta
     9061 cggtctggac ggcagctcca tcccggcttt gctgaaaaaa ctggaagagc acggcatgac
     9121 ccaactgggc gaaaatcatg acattacgtt ggatgtcagc cgccgtatat acgaagccgc
     9181 ccgctaagct ttttacgcct caaactttcg ttttcgggca tttcgtccag acttaagttc
     9241 acaacacctc accggagcct gctccggtga gttcatataa aggaggaacg tatggctaat
     9301 ccaaccgtta ttaagctaca ggatggcaat gtcatgcccc agctgggact gggcgtctgg
     9361 caagcaagta atgaggaagt aatcatcgcc attcaaaaag cgttagaagt gggttatcgc
     9421 tcgattgata ccgccgcggc ctacaagaac gaagaaggtg tcggcaaagc cctgaaaaat
     9481 gcctcagtca acagagaaga actgttcatc accactaagc tgtggaacga cgaccacaag
     9541 cgcccccgcg aagccctgct cgacagcctg aaaaaactcc agcttgatta tatcgacctc
     9601 tacttaatgc actggcccgt tcccgctatc gaccattatg tcgaagcatg gaaaggcatg
     9661 atcgaattgc aaaaagaggg attaatcaaa agcatcggcg tgtgcaactt ccagatccat
     9721 cacctgcaac gcctgattga tgaaactggc gtgacgcctg tgataaacca gatcgaactt
     9781 catccgctga tgcaacaacg ccagctacac gcctggaacg cgacacacaa aatccagacc
     9841 gaatcctgga gcccattagc gcaaggaggg aaaggcgttt tcgatcagaa agtcattcgc
     9901 gatctggcag ataaatacgg caaaaccccg gcgcagattg ttatccgctg gcatctggat
     9961 agcggcctgg tggtgatccc gaaatcggtc acaccttcac gtattgccga aaactttgat
    10021 gtctgggatt tccgtctcga caaagacgaa ctcggcgaaa ttgcaaaact cgatcagggc
    10081 aagcgtctcg gtcccgatcc tgaccagttc ggcggctaac atgcaaattc tcccggtggc
    10141 ggtaatgttc cgctaccgga cttttcagaa atcatttatt cccctcgcgt cccgcccgtt
    10201 gttactcttc cttgttcagg aatgccaaat ataaggacat catcatgcag agccggaagc
    10261 tcttaaaaga acaactcatc tatatccggg ataaacgcaa cggagaggtg aaaaacagat
    10321 gaaaataata cttctgtttt tagcagccct ggcaagtttt accgtacacg cgcagcctcc
    10381 ttcacagacc gtagaacaaa cagtccggca gatttatcag aactataaat cagatgccag
    10441 tacgccttat ttcggtgaaa ccggagagcg ggcgataact tcagcgcgta ttcaacaggc
    10501 gcttaccctg aacgacaatc ttacgctgcc gggcaatatt ggctggctgg attatgatcc
    10561 ggtttgtgat tgtcaggatt ttggcgatct ggtgctagaa agcgttgcga taacccaaac
    10621 tgacgccgat catgccgatg ccgttgtgcg ctttcgtatc tttaaagatg ataaagaaaa
    10681 gaccacgcag acactgaaaa tggtggcgga aaatggtcgt tgggtcattg acgatattgt
    10741 cagcaatcat ggcagtgtct tacaagcagt taatagcgag aatgaaaaaa cgctggccgc
    10801 tttagcttcg ttgcaaaaag aacagccgga agcctttgtt gccgaactct ttgaacatat
    10861 tgctgattat agctggccgt ggacgtgggt ggtttccgac tcttaccgcc aggcggttaa
    10921 tgccttctat aaaaccacct tcaagacggc caataatccc gatgaagata tgcaaataga
    10981 acggcaattt atttacgaca atccgatctg ttttggcgaa gagtcgctat tttcacgcgt
    11041 tgatgaaatt cgagtcctgg agaaaaccgc cgattccgcc cgcattcatg ttcgttttac
    11101 gctgaccaat ggcaacaacg aagagcaaga actggtttta cagcggcgcg aaggcaagtg
    11161 ggaaatcgct gattttatcc gcccgaacag cggcagccta cttaagcaga ttgaggcaaa
    11221 aactgccgcc agattaaagc aatgagctga attaaataac aattagccgg aacaataaat
    11281 aaaagggaac actatatgaa aacgattttc accgtgggag ctgttgttct ggcaacctgc
    11341 ttgctcagtg gctgcgtcaa tgagcaaaag gtcaatcagc tggcgagcaa tgtgcaaaca
    11401 ttaaatgcca aaatcgcccg gcttgagcag gatatgaaag cactacgccc acaaatctat
    11461 gctgccaaat ccgaagctaa cagagccaat acgcgtcttg atgcacagga ctattttgat
    11521 tgcctgcgct gcttgcgtat gtacgcagaa tgataaaaaa atccccggca gcatgtcagt
    11581 tgccgggtta taggctgttt gctaaaaaaa agccaaacat aaggacatga ttatgcgacg
    11641 ctggcacacc tgttttttta ttctgctgtt ctgtggcttc agcggaaacg tgttgtgcaa
    11701 agaatcgatt aatgaagcga tagaacgttt gtaccaacca ttgaccagta atgacgatat
    11761 accaataacc gatgaattca gtctcgattt gcgaagtaat atgagcgcta ctcctggcaa
    11821 aatgacaccc tggctgaata ataatctttt gtgtcgctgt gtcgatgacg ctttcgtttc
    11881 tgcagaaata atccaaagca cacacctaaa tggcggccga acgcatgtac tgttgcagct
    11941 ggttatcaaa caaaatcgca cagatatcca ccggttactg gggctaatgc tggttcgtga
    12001 aaatgataat catcgttggc taatagaaga catcgatgac
//
LOCUS       DADMJB010000129        11883 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.129, whole genome shotgun sequence.
ACCESSION   DADMJB010000129 DADMJB010000000
VERSION     DADMJB010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11883
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.129"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(39..353)
                     /locus_tag="JN078_003089"
                     /pseudo
     CDS             complement(39..353)
                     /locus_tag="JN078_003089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418152.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIB family hydrolase"
     gene            complement(468..875)
                     /locus_tag="JN078_003090"
     CDS             complement(468..875)
                     /locus_tag="JN078_003090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001311237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YidB family protein"
                     /protein_id="HAY9042212.1"
                     /translation="MIIMGLFDEVVGAFLKGDAGKYQAILSWVEEQGGIQVLLEKLQS
                     GGLGAILSTWLSNQQSNQSVSGEQLESAPGTNAVSDLGQKLGVDTSTASSLLAEQLPK
                     IIDALSPQGEVSSQANNDLLSAGMELLKGKLFR"
     gene            complement(1106..3520)
                     /gene="gyrB"
                     /locus_tag="JN078_003091"
     CDS             complement(1106..3520)
                     /gene="gyrB"
                     /locus_tag="JN078_003091"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HAY9042213.1"
                     /translation="MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVV
                     DNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG
                     KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET
                     EKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHY
                     EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQR
                     DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS
                     QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT
                     RRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI
                     LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT
                     LLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATL
                     HTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQ
                     TVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI
                     TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYK
                     GLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADLLFTTLMGDAVEPRRAFIEENALK
                     AANIDI"
     gene            complement(3549..4622)
                     /gene="recF"
                     /locus_tag="JN078_003092"
     CDS             complement(3549..4622)
                     /gene="recF"
                     /locus_tag="JN078_003092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HAY9042214.1"
                     /translation="MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIY
                     TLGHGRAFRSLQIGRVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDG
                     HKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWACFHNEPGFFTAWSNLKRLLKQ
                     RNAALRQVTRYEQLRPWDKELIPLVEQISTWRAEYSAGIAADMADTCKQFLPEFSLTF
                     SFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKL
                     LMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA
                     EHVIDMSDENSKMFTVEKGKITD"
     gene            complement(4622..5722)
                     /gene="dnaN"
                     /locus_tag="JN078_003093"
     CDS             complement(4622..5722)
                     /gene="dnaN"
                     /locus_tag="JN078_003093"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006177590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HAY9042215.1"
                     /translation="MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSL
                     TGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSG
                     RSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLF
                     ETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQI
                     GSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE
                     KFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCE
                     NVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL"
     gene            complement(5727..7130)
                     /gene="dnaA"
                     /locus_tag="JN078_003094"
     CDS             complement(5727..7130)
                     /gene="dnaA"
                     /locus_tag="JN078_003094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HAY9042216.1"
                     /translation="MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPN
                     RFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVA
                     QTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADN
                     PGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNA
                     IEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIN
                     GVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVR
                     ELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVA
                     DLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE
                     SHDIKEDFSNLIRTLSS"
     gene            7427..7507
                     /locus_tag="JN078_003095"
     CDS             7427..7507
                     /locus_tag="JN078_003095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042217.1"
                     /translation="MTIDKNWLNRSNKDPGRSLRFTHQPV"
     gene            7737..7877
                     /gene="rpmH"
                     /locus_tag="JN078_003096"
     CDS             7737..7877
                     /gene="rpmH"
                     /locus_tag="JN078_003096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001686914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HAY9042218.1"
                     /translation="MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTV
                     SK"
     gene            7894..8253
                     /gene="rnpA"
                     /locus_tag="JN078_003097"
     CDS             7894..8253
                     /gene="rnpA"
                     /locus_tag="JN078_003097"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014172301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HAY9042219.1"
                     /translation="MVKLAFPRELRLLTPSQFTFVFQQPQRAGTPQITILGRLNSLGH
                     PRIGLTVAKKNVRRAHERNRIKRLTRESFRLRQHELPAMDFVVVAKKGVADLDNRALS
                     EALEKLWRRHCRLARGS"
     gene            8217..8474
                     /gene="yidD"
                     /locus_tag="JN078_003098"
     CDS             8217..8474
                     /gene="yidD"
                     /locus_tag="JN078_003098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HAY9042220.1"
                     /translation="MAPPLSPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEA
                     LRRFGVIKGSWLTVKRVLKCHPLHPGGDDPVPPGPFDTREH"
     gene            8477..10123
                     /gene="yidC"
                     /locus_tag="JN078_003099"
     CDS             8477..10123
                     /gene="yidC"
                     /locus_tag="JN078_003099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HAY9042221.1"
                     /translation="MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAA
                     GSAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLET
                     SPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNT
                     FTKTFVLKRGDYAVNVNYNVQNAGEKPLEISTFGQLKQSITLPPHLDTGSSNFALHTF
                     RGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYT
                     ANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLW
                     FISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKTQYTSMAKMRMLQPKIQA
                     MRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAP
                     FALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLW
                     FPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS"
     gene            10229..11593
                     /gene="mnmE"
                     /locus_tag="JN078_003100"
     CDS             10229..11593
                     /gene="mnmE"
                     /locus_tag="JN078_003100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HAY9042222.1"
                     /translation="MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPKPR
                     YADYLPFKDADGSVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPG
                     LRIARPGEFSERAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLV
                     EALTHLRIYVEAAIDFPDEEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMK
                     VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE
                     ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVR
                     NKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGGFLARRRH
                     LQALEQAAEHLQQGKAQLLGAWAGELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSF
                     CIGK"
     gene            11836..>11883
                     /gene="tnaC"
                     /locus_tag="JN078_003101"
     CDS             11836..>11883
                     /gene="tnaC"
                     /locus_tag="JN078_003101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophanase leader peptide"
                     /protein_id="HAY9042223.1"
                     /translation="MNILHICVTSKWFNID"
BASE COUNT         2717 a         3254 c         3070 g         2842 t
ORIGIN      
        1 ggacaggggt atcgcttagt ttttcaattt cctatacgtg aaccgacttc gcgagagagt
       61 ttttccagga aacgatagtc gtcataactg agagcagttt gcgccacggt gctaccatca
      121 gcggccttct gtaccagcgc gccgttataa gtaatgcagt agtcgcccgg ctgttccata
      181 tgcagctctt tcaggtagtt gtgaacgcct gcataagggc gacccgtcgt tagcacgaca
      241 ttcacgccac gggcgcgagc tgcggcaatc gcatttttaa cggcgggtga aatggtgtga
      301 tcgggcagca gaagggtgcc atccatatcg atagcaatga gtttgatagc catgagttcc
      361 ccaggtagat tagttcctga cccatgctaa cgcgattccg ctcaaaaatc agtacaacac
      421 ccgagggaaa agggggatgc aacgcgggtt gcatgctccc catttgctta gcggaagagt
      481 ttccctttca gcagttccat acctgcggaa agcagatcgt tattggcttg tgaagacact
      541 tcaccttgcg gtgagagcgc atcaataatc ttcggcaatt gttctgccag taaactggaa
      601 gccgtactgg tatccacgcc aagtttttgc ccgagatcgg acaccgcatt tgtgccgggc
      661 gccgattcca gttgctcgcc gctaactgat tgattgctct gctgattact caaccaggtt
      721 gagagaatgg cccctaagcc gccactttgc agtttttcca gcagcacctg aatgccgccc
      781 tgctcctcaa cccaacttaa aatagcctga tatttccccg catcgccttt cagaaaggca
      841 ccgacaactt catcaaaaag ccccatgata atcacctgta aagcgttacg tgttgaccca
      901 aaaagtatag atctgcggga tgataattgc ggattgcaga aataaaaagg gcggagatga
      961 tctccgccct ttttttatag cttcttgccg gatgcggcgt taacgtctta cctggcctac
     1021 aaaatcatta aaattcaata cattgcaaga ttttcgtagg cctgataagc gtagcgcatc
     1081 aggcacgctc gcatggttaa cgccattaaa tatcaatatt cgccgctttc agggcgttct
     1141 cttcaataaa cgcacgacgc ggttctacgg cgtcgcccat cagcgtggtg aacaacaggt
     1201 cagcggcaat cgcatcctta acggtaacgc gcagcatacg acgactttcc gggtccatgg
     1261 tggtttccca cagctgttcc gggttcatct cgcccagacc tttataacgc tggatggaga
     1321 gaccgcgacg agactctttc accagccagt ccagcgcctg ctcgaagctg gctaccggct
     1381 gacgacgctc gccacgttcg ataaatgcat cttcttccag caagccacgc agtttctcac
     1441 ccagcgtgca gatacgacga tattcgccac cagtgataaa ttcgtgatcc agcggatagt
     1501 cagtatccac accgtgggta cgcacgcgaa caatcggctc gaacaggttt tgttcggcat
     1561 tggtgtggac atcaaacttc cactggctgc cgtgctgttc tttgtcgttc agttcgctga
     1621 ccagcgcgtt cacccagcgg gtaacggtct gctcatcaga gaggtcggct tccgtcagcg
     1681 tcggctgata gataagctct ttcagcattg ctttcggata acgacgctcc atgcggttga
     1741 tcattttctg cgtcgcgttg tactcagaca ccagtttctc taacgcttcg ccagccaatg
     1801 ccggtgcgct ggcgttggtg tgcagcgttg cgccgtccag cgcgatagag atctggtact
     1861 gatccatcgc ttcgtcgtct ttaatgtact gttcctgctt gcctttcttc actttgtaca
     1921 gcggcggctg agcgatgtag acgtgaccgc gttcaacgat ttccggcatc tgacgataga
     1981 agaaggtcaa cagcagcgta cgaatgtgcg agccgtcgac gtccgcatcg gtcatgatga
     2041 tgatgctgtg ataacgcagt ttgtccgggt tgtactcgtc acgaccgata ccacagccaa
     2101 gcgcggtgat aagcgtcgcc acttcctgag aagagagcat cttatcgaag cgcgctttct
     2161 caacgttgag gattttaccc ttcagcggca gaatcgcctg gttcttgcgg ttacgcccct
     2221 gcttcgcaga gccgcccgcg gagtcccctt ccaccaggta cagttcggaa agcgccggat
     2281 cgcgttcctg gcagtctgcc agtttgcccg gcaggcccgc taagtcgagc gcacctttac
     2341 ggcgggtcat ttcacgcgcg cgacgcgccg cttcacgggc acgggcagca tcgataattt
     2401 tgccaaccac gattttcgcg tcggttgggt tttccagcag gtattctgcc agcagttcgt
     2461 tcatctgctg ttcaaccgcc gatttcacct cagaagaaac cagtttgtct ttggtctggg
     2521 aggagaattt cgggtccggc acttttacgg aaacgaccgc aatcaggcct tcacgcgcat
     2581 cgtcaccggt ggcgctgact ttggcttttt tgctgtagcc ttctttgtcc atgtaggcgt
     2641 tcagggtacg ggtcatcgcc gcacggaagc ctgccaggtg agtaccgccg tcacgctgcg
     2701 gaatgttgtt ggtaaagcag tagatgtttt cctggaagcc atcgttccac tgcaacgcca
     2761 cttcgacgcc aataccgtct ttttcggtgg agaagtagaa gatattcgga tggatcggcg
     2821 ttttgttctt gttcagatat tcaacgaacg ccttgatgcc gccttcatag tggaagtggt
     2881 cttctttgcc gtcacgcttg tcgcgcagac gaatggaaac gccggagttg aggaacgaca
     2941 actcacgcag acgtttcgcc agaatttcat attcgaactc ggtcacattg gtgaaggttt
     3001 cgaggctggg ccagaaacgc accatggtgc cggttttttc agtctcgccg gtaaccgcca
     3061 gcggagcctg cggtacaccg tgttcgtaga tctgacggtg aattttaccc tcgcgctgga
     3121 taaccagctc cagtttttgc gacagggcgt ttactaccga aacaccaacg ccgtgcagac
     3181 cgccggacac tttataggag ttatcgtcaa atttaccgcc tgcgtgcaga acggtcatga
     3241 tcacttccgc cgccgatacg ccctcttccg ggtgaatacc ggtcggaatg ccgcgcccgt
     3301 catcctgtac agagacagag ttatcggcgt gaatggtgac gataatttct ttacagtgac
     3361 ccgcgagcgc ttcgtcgata gcgttatcta ccacctcgaa taccatgtgg tgcagaccgg
     3421 tgccgtcatc cgtgtcgccg atatacatac ccgggcgctt acgcaccgca tccagccctt
     3481 tcaggacttt gatactggag gagtcataag aattcgacat caacgtttct cgctcattta
     3541 tacttgggtt aatccgttat tttacccttt tccacggtaa acatcttcga attttcgtcc
     3601 gacatgtcta taacgtgttc agcactgatc gcgctgacaa agacctgtga ttgcgtcgct
     3661 tttaagcggc tggcaagcag cccgcgacgc tcatcatcaa gctcagaggc aaaatcatct
     3721 atcaggtaga gacaccgccg cccgctttca cgggtgagga actctccttg cgccagacgt
     3781 aaggcgcaca tcaacagctt aagctgccca cgcgataagg tatcttccac cggcgcaccg
     3841 tcggcgcgaa tgcgtaagtc cgctttatgc gggccatgcg cggtgtaggt tagctggcga
     3901 tcgcgttcaa aattacgttc cagcacctca gcatattctg tctctttctc ccagccgcgc
     3961 tggaaagaga aagtcagaga aaactcaggg agaaattgct tacaagtatc ggccatatca
     4021 gccgcgatac cggcgctata ctccgcgcgc caggtgctga tttgctccac cagcgggatc
     4081 agctctttat cccacgggcg tagctgttcg taacgtgtca cctggcgcag cgccgcattg
     4141 cgctgcttga gcaatcgctt gagattgctc caggcggtga aaaatccggg ttcgttgtga
     4201 aagcatgccc agtcgagaaa tgctcttctg tatttggggc cgccgttgag taaagtaaac
     4261 ccttctggcg ttatcagctg catcggcatc aggtgcgcca gctccgcgac tttatgcccg
     4321 tcagtaccgt cgatgcggac tttgctgtcg ccttgtttgt ctttggttaa gccaatcgcc
     4381 gtctcgcgct cttcgccctg taatcgccca tggagaacaa atgcctcctg ctcatggcga
     4441 atgacgcgac caatctgcaa actgcgaaac gcccgaccat ggccgagcgt atagatggct
     4501 tccagcacac tggttttgcc actgccgttg gcacctacca gaaagttaaa gccgggagat
     4561 aaggcgagat ccgcggtttc gatattgcgg aaatcgcgga tcaacaagcg ggtgagggac
     4621 attacagtct cattggcatg acaacataag ccgcgctctg gctggccgca tcttcaatct
     4681 gcacgctgga aaccgaatcg gtcagcatca tgcggacgtt ttcgcatttc agcgcgttca
     4741 gaacatccag cacatagctg acgttgaagc cgatttccat ctccgcaccg ctataggtaa
     4801 cgtcgaggat ctcttccgct tcttcctgtt ccgggttgtt ggcagtgatt ttcagctggt
     4861 tttcgctgac ataaagacgt acgccgcgga atttctcgtt agagagaatt gccgcacggg
     4921 caaacgcctg cttgagcaga tcgcagccag cttccagatg tttgtccggg ttcttcggta
     4981 gaacgcggcg gtaatccggg aagcgaccat ccaccagttt ggaggtgaag ataaagtcgc
     5041 caacgtgggc acgaatgtta ttgctgccaa tctgcacgcg cagcggattg tcgccgccgt
     5101 cgagcatacg catcagttca atcacgcctt tacgcggcac gatcaccgaa tggcttggca
     5161 aagattgacc aattggcatt gaacagactg ccagacggtg accatcggtc gctacggtgc
     5221 gcagttcttc gccttcggtt tcaaacagca taccgtttaa gtaatagcga acatcctgat
     5281 gcgccatcga aaactgggtc gcttcaatca gacgcttcat cgtcgcctgc ggcagggtaa
     5341 attcgacttc gctctgccag tcatcgaggt tcgggaaatc cgccgctggc agggtagaca
     5401 gcgaaaaacg gctacgcccg gagcgcacca gcatccgttc accttccagc tgcacggcaa
     5461 tttccgcgcc ttcaggcaga ccacggcaga tatcaaagaa tttgcgcgcc ggaacggtcg
     5521 ttgctcctgg ctcgtgtggc tgaaccagcg caacacgtgc caccatttcc atctcgagat
     5581 cagtaccggt cagcgacaac gtaccgtcag caacctgtaa cagcagatta ccgagaatcg
     5641 gtagcgtagg acgaccacct aacggaccgc tcacctgttg tagcggtttt aataaatgct
     5701 cacgttctac ggtaaatttc ataggtttac gatgacaatg ttctgattaa atttgaaaaa
     5761 tcttctttga tatcgtggct ctcttcacgc aactgctcga tcttacggca ggcatgaagc
     5821 accgtcgtgt ggtcacgacc accaaacgca tcgccaatct ccggcagact gtggttagtc
     5881 agctctttcg ccagcgccat cgccatctgg cgcggacgcg ccaccgagcg ggatcgacgc
     5941 ttggaaagga gatccgcgac tttgatcttg tagtactccg ccaccgtctt ctgaatattg
     6001 tcgatggtga ccagtttttc ctgcaatgcc agcaagtcgc gcagcgcctc acgcacgaag
     6061 tcgatggtga tcgcccgtcc ggtaaagttg gcattggcaa tgacgcggtt cagcgcccct
     6121 tccagctcac gtacgttaga tcgtagacgc ttggcgataa agaacgccac ttcgcccggc
     6181 aaacgaatgt cgttttcgtc ggcctttttc atcaggatcg ccacacgggt ttccagctct
     6241 ggcggttcga tcgccacagt cagtccccaa ccgaagcggg atttcaaacg atcctcaacg
     6301 ccgttgatct ctttcggata gcgatccgag gtgagaatga tctgttgatt accttccagc
     6361 agggcgttga aggtatggaa aaactcttcc tgagatcgtt ctttattagc aaaaaactga
     6421 atatcgtcga tcagcagtgc atctacggaa cggtagtagc gtttaaactc ttcgatcgcg
     6481 ttgttttgca gggctttaac catgtcctga acaaagcgct cggagtgcat ataaaccact
     6541 ttggcattcg gcttgcgcgc cataatgccg ttacccaccg catgcagcag gtgagtttta
     6601 cccagacccg tgccgccata aaggaacaac gggttatagg caccgccagg gttatccgcc
     6661 acctggcgag ccgccgcgcg cgccagttgg ttagatttac cttcaacgaa gttatcaaac
     6721 gtgtgtttga cgtttacgtt agaacgatag gtcggttctg ccggggccgg gacgttatcc
     6781 caacctgagc gcgtagaagg cgcagcacgt tgcggctgcg tttgcgccac ctgtgcaggg
     6841 gccgcgacgt tgctcgtcac tgccgcttgt ggcgtttgcg tcaccggttt ggtgccgact
     6901 tcaaaacgca gctgtggggc atccgctccg cagaaactgg ttagcagtcc attgatatta
     6961 ttaaggtact tgtcccgtac ccaatcgagg acaaaacggt ttggcgcgta cagggccagc
     7021 gtgttatcgc tcagttccgc ctgcaatggg cgtatccaca tactgaattc tgtggctggt
     7081 aactcatcct gcaatcgggc aagacactgc tgccaaagcg aaagtgacac ggcggactcc
     7141 actcgaacaa aagtcgataa tgactaaggc tgaaacattc atgattgttg acgtacgtcg
     7201 aaaagaccct gcttgagggt gacgcacgaa ccgctgtctg cggttatatg cccgatcaag
     7261 atcctgcaaa acgatcggga ccgcggatca tagcctaaac tgcgcaagag atcttctgtt
     7321 tctcacagat tttcccgatt tatccacagg actttccaga actcgctaag tgtaaacgat
     7381 cctgccgcga ggcgggcacg atttacgccg catattgaaa aatttaatga ccatagacaa
     7441 aaattggctt aatcgatcta ataaagatcc aggacgatcc ttgcgcttta cccatcagcc
     7501 cgtataatcc tccacccggc gcgccatgct ggtttccact ggtgtgaggt cgtacatttt
     7561 ccctgcgaaa aggtgcggaa aagcgcggta aataaggaaa gagaattgac tccggagtgt
     7621 acaattatta caatccggcc tctttaatca cccatggctt cggtgtccat cgtttcattt
     7681 ttcggcggat atccaataaa gccattgaat ttattcaagt ttaggtagaa atcgccatga
     7741 aacgcacttt tcaaccgtct gtactgaagc gcaaccgttc tcacggcttc cgtgctcgta
     7801 tggctactaa aaatggtcgt caggttctgg cacgtcgtcg tgctaaaggc cgcgctcgtc
     7861 tgaccgtttc taagtaataa agctaacccc tgagtggtta agctcgcatt tcccagggag
     7921 ttacgcttgt taactcccag tcaattcaca ttcgtcttcc agcagccaca acgggctggc
     7981 acgccgcaaa ttaccattct cggccgcctg aattcgctgg ggcatccccg tatcggtctt
     8041 acagtcgcca agaaaaacgt tcgacgcgcc catgaacgca atcggattaa acgtctgacg
     8101 cgtgaaagct tccgtctgcg ccaacatgaa ctcccggcta tggatttcgt ggtggtggcg
     8161 aaaaaagggg ttgccgacct cgataaccgt gctctctcgg aagcgttgga aaaattatgg
     8221 cgccgccact gtcgcctggc tcgcgggtcc tgatagccct cattcgggtc tatcaacgcc
     8281 tgattagtcc gctactcggg ccgcattgtc gtttcactcc aacctgttca agctacggaa
     8341 ttgaggcatt gcgcaggttt ggagtgataa aaggcagttg gttgacggtg aaacgcgtat
     8401 taaaatgcca ccctttacac cctggtggtg acgatcccgt cccgcccgga ccatttgata
     8461 ccagagaaca ctaacgatgg attcgcaacg caatctttta gtcatcgctt tgctgttcgt
     8521 gtctttcatg atctggcaag cctgggagca ggataaaaac ccgcaacctc aggcccaaca
     8581 gaccacgcag acaacgacca ccgcagcggg tagcgccgcc gaccagggcg taccggccag
     8641 tggccagggg aaactgatct cggttaagac cgacgtgctt gatctgacca tcaacacccg
     8701 tggtggtgat gttgagcaag ctctgctgcc tgcttacccg aaagagctga actctaccca
     8761 gccgttccag ctgctggaaa cttcaccgca gtttatttat caggcacaga gcggtctgac
     8821 cggtcgtgat ggcccggata acccggctaa cggcccgcgt ccgctgtata acgttgaaaa
     8881 agacgcttat gtgctggctg aaggtcaaaa cgaactgcag gtgccgatga cgtataccga
     8941 cgcggcaggc aacacgttta ccaaaacgtt tgtcctgaaa cgtggtgatt acgctgtcaa
     9001 cgtcaactac aacgtgcaga acgctggcga gaaaccgctg gaaatctcca cctttggtca
     9061 gttgaagcaa tccatcactc tgccaccgca tctcgatacc ggaagcagca acttcgcact
     9121 gcacaccttc cgcggcgcgg cgtactccac gcctgacgag aagtacgaga aatacaagtt
     9181 cgataccatt gccgataacg aaaacctgaa catctcttcg aaaggtggtt gggtggcaat
     9241 gctgcaacag tatttcgcga cggcgtggat cccgcataac gacggtacca acaacttcta
     9301 taccgctaat ctgggtaacg gcatcgccgc tatcggctat aaatctcagc cggtactggt
     9361 tcagcctggt cagactggcg cgatgaacag caccctgtgg gttggcccgg aaatccagga
     9421 caaaatggca gctgttgctc cgcacctgga tctgaccgtt gattacggtt ggttgtggtt
     9481 catctctcag ccgctgttca aactgctgaa atggatccat agctttgtgg gtaactgggg
     9541 cttctccatt atcatcatca cctttatcgt tcgtggcatc atgtacccgc tgaccaaaac
     9601 gcagtacacc tccatggcga agatgcgtat gctgcagccg aagattcagg caatgcgtga
     9661 gcgtctgggc gatgacaaac agcgtatcag ccaggaaatg atggcgctgt acaaagctga
     9721 gaaggttaac ccgctgggcg gctgcttccc gctgctgatc cagatgccaa tcttcctggc
     9781 gttgtactac atgctgatgg gttccgttga actgcgtcag gcaccgtttg cactgtggat
     9841 ccacgacctg tcggcacagg acccgtacta catcctgccg atcctgatgg gcgtaacgat
     9901 gttcttcatt cagaagatgt cgccgaccac agtgaccgac ccgatgcagc agaagatcat
     9961 gacctttatg ccggtcatct tcaccgtgtt cttcctgtgg ttcccgtcag gtctggtgct
    10021 gtactatatc gtcagcaacc tggtaaccat tattcagcag cagctgattt accgtggtct
    10081 ggaaaaacgt ggcctgcata gccgcgagaa gaaaaaatcc tgattcggtg agttttcgct
    10141 aaaataaggg cggtcagttg accgcctttt ttcttttcgt agggcggata agcaccgcgc
    10201 atccgccaca caaagcaaca ggaacatcat gagcgataat gacactatcg tagcccaggc
    10261 cacgcctccg ggacgtggcg gcgttggcat cctgcgcatc tccggcttca aagcccgtga
    10321 agttgccgaa accgtgctgg gtaaactgcc taagccgcgc tacgccgatt atcttccgtt
    10381 taaagacgcc gacggcagcg tgctcgatca ggggattgcg ctatggttcc ctggcccgaa
    10441 ctcgttcacc ggcgaagatg tgctggaact gcaaggtcat ggcggtccgg tgatcctcga
    10501 cctgctgtta aaacgcattc tgaccattcc cggcctgcgg attgctcgcc ctggtgagtt
    10561 ttccgaacgc gcgtttctta acgataaact tgacttagcc caggccgagg cgattgccga
    10621 tcttatcgac gccagttcgg aacaggcggc ccgttcggca cttaactcgc tgcaaggcgc
    10681 attctccgca cgggttaatc atctggtaga agccctcacc cacttgcgca tttacgtcga
    10741 agcggcaatt gatttccccg atgaagagat cgatttcctc tccgacggaa aaattgaagc
    10801 ccagctcaat gacgttattg ccgatcttga tgcagtgcgt gctgaagcac gtcagggtag
    10861 tttgttgcgc gaagggatga aagtggtgat tgccggacgt cctaacgccg gtaaatcgag
    10921 cctgttaaac gcgctggcgg ggcgtgaagc ggcaatcgta accgatatcg ccggaactac
    10981 gcgtgacgtg ctgcgtgagc atatccacat tgacggaatg ccgctgcata tcatcgatac
    11041 cgccgggcta cgtgaagcca gtgacgaagt agaacgtatt ggtatcgagc gcgcgtggca
    11101 ggaaattgaa caggccgacc gcgtgctgtt tatggtcgat ggcaccacaa cagacgccgt
    11161 ggatccggca gagatctggc cggaatttat tgcccgtctg ccagcgaaac tgccgatcac
    11221 cgtggtgcgc aataaagccg atatcaccgg cgaaacgctg ggaatgagtg aagtgaacgg
    11281 tcacgcgtta attcgtctct cggcaaggac tggtgaaggc gtggacgtgc tgcgtaacca
    11341 tctcaaacag agcatgggct ttgacaccaa catggaaggc ggcttcctgg cgcgtcgtcg
    11401 ccacctacag gcgctggaac aggcagcgga acatctacaa cagggcaaag cgcaactgtt
    11461 gggagcctgg gcaggtgaac tgctggcgga agagttgcgt ctggcacagc agaacttaag
    11521 cgaaatcacc ggggaattta cttcagacga cctgctgggg cggattttct ccagcttctg
    11581 tattggtaag taaccgcgct tacgaagccg tattctgact gtcagatgcg gcttcgcttc
    11641 attgttagca ctcctgttat tcctcaaccc tttttttaaa cattaaaatt cttacgtaat
    11701 ttataatctt aaaaaaagca tttaatattg ctccccgaac gattgtgatt cgattcacat
    11761 ttaaacaatt ttagaataga caaaattctt gagtattata ctgtagcctc gtgtctttcg
    11821 aggaataagt gcattatgaa tatcttacat atatgtgtga cctcaaaatg gttcaatatc
    11881 gac
//
LOCUS       DADMJB010000130        11825 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.130, whole genome shotgun sequence.
ACCESSION   DADMJB010000130 DADMJB010000000
VERSION     DADMJB010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11825)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11825)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11825
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.130"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(37..273)
                     /locus_tag="JN078_003102"
     CDS             complement(37..273)
                     /locus_tag="JN078_003102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313355.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1435 domain-containing protein"
                     /protein_id="HAY9042224.1"
                     /translation="MLQRTLGSGWGVLLPGLLIAGLMYADLSPDQWRIVILMGLVLTP
                     VMLYHKQLRHYVLLPSCLALIAAIMLMIMNLNQG"
     gene            414..1202
                     /gene="fhuF"
                     /locus_tag="JN078_003103"
     CDS             414..1202
                     /gene="fhuF"
                     /locus_tag="JN078_003103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore-iron reductase FhuF"
                     /protein_id="HAY9042225.1"
                     /translation="MAYRSAPLYEDIIWRTHLQPQDAGLAQAVRATIAKHREHLLEFI
                     RLDEPAPLNAMTLAQWSSPNALSSLLAVYSDHIYRNQPTMIRENKPLISLWAQWYIGL
                     MVPPLMLALLTQEKALDVSPEHFHAEFHETGRVACFWVDVCEDKNATPHSPQQRMETL
                     ISQALVPVVQALEATGEINGKLIWSNTGYLINWYLTEMKQLLGEATVESLRHALFFEK
                     TLTNGEDNPLWRTVVLRDGLLVRRTCCQRYRLPDVQQCGDCTLK"
     gene            complement(1240..1916)
                     /gene="bglJ"
                     /locus_tag="JN078_003104"
                     /pseudo
     CDS             complement(1240..1916)
                     /gene="bglJ"
                     /locus_tag="JN078_003104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418786.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional activator BglJ"
     gene            complement(1874..2599)
                     /locus_tag="JN078_003105"
     CDS             complement(1874..2599)
                     /locus_tag="JN078_003105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAY9042226.1"
                     /translation="MLPGCCKNGIVISKIPVMQAGLKEVMRTHFPEYEIISSASAEDF
                     TLLQLRRSGLVIADLAGESEDPRSVCEHYYSLISQYREIHWVFMVSRSWYSQAVELLM
                     CPTATLLSDVEPIENLVKTVRSGNTHAERISAMLTSPAMNETHDFSYRSVILTLSERK
                     VLRLLGKGWGINQIVSLLKKSNKTISAQKNSAMRRLAIHSNAEMYAWINSAQGARELN
                     LPSVYGDAAEWNTAELRREMSHS"
     gene            3218..3988
                     /locus_tag="JN078_003106"
     CDS             3218..3988
                     /locus_tag="JN078_003106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418784.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HAY9042227.1"
                     /translation="MQTEQQRAVTRLCIQCGLFLLQHGAESALVDELSSRLGRALGMD
                     SVESSISSNAIVLTTIKDGQCLTSTRKNHDRGINMHVVTEVQHIVILAEHHLLDYKGV
                     EKRFSQIQPLRYPRWLVALMVGLSCACFCKLNKGGWDGAIITFFASTAAMYIRQLLAQ
                     RHLHPQINFCLTAFAATTISGLLLQLPTFSNTPTIAMAASVLLLVPGFPLINAVADMF
                     KGHINTGLARWAIASLLTLATCVGVVMALTIWGLRGWV"
     gene            3979..4452
                     /locus_tag="JN078_003107"
     CDS             3979..4452
                     /locus_tag="JN078_003107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418783.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter"
                     /protein_id="HAY9042228.1"
                     /translation="MGVIEFLFALAQDMILAAIPAVGFAMVFNVPVRALRWCALLGAI
                     GHGSRMILMTRGLNIEWSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMFPGISA
                     YTAMISAVKISQLGYSEPLMITLLTNFLTASSIVGALSIGLSIPGLWLYRKRPRV"
     gene            4560..5099
                     /gene="dnaT"
                     /locus_tag="JN078_003108"
     CDS             4560..5099
                     /gene="dnaT"
                     /locus_tag="JN078_003108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein DnaT"
                     /protein_id="HAY9042229.1"
                     /translation="MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYA
                     VTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFI
                     RLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPK
                     RDVNTVSEPDSQIPPGFRG"
     gene            5102..5839
                     /gene="dnaC"
                     /locus_tag="JN078_003109"
     CDS             5102..5839
                     /gene="dnaC"
                     /locus_tag="JN078_003109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001731874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication protein DnaC"
                     /protein_id="HAY9042230.1"
                     /translation="MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGAIRSAAL
                     ERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASF
                     IFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLNDL
                     SNVDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVM
                     DRMRLGNSLWVIFNWDSYRSRVTGKEY"
     gene            5888..6382
                     /locus_tag="JN078_003110"
     CDS             5888..6382
                     /locus_tag="JN078_003110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418780.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2501 domain-containing protein"
                     /protein_id="HAY9042231.1"
                     /translation="MMETVKHLLCCAIAASALISTGVHAASWKDALSSAASELGNQNS
                     TTQEGGWSLASLTNLLSSGNQALSADNMNNAAGILQYCAKQKLASVTDAENIKNQVLE
                     KLGLNSEEQKEDTNYLDGIQGLLKTKDGQQLNLDNIGTTPLAEKVKTKACDLVLKQGL
                     NFIS"
     gene            6636..8927
                     /gene="opgB"
                     /locus_tag="JN078_003111"
     CDS             6636..8927
                     /gene="opgB"
                     /locus_tag="JN078_003111"
                     /EC_number="2.7.8.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418779.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerol--membrane-oligosaccharide
                     glycerophosphotransferase"
                     /protein_id="HAY9042232.1"
                     /translation="MSELLSFALFLASVLIYAWKAGRNTWWFAATLTVLGLFVVLNIT
                     LFASDYFTGDGINDAVLYTLTNSLTGAGVSKYILPGIGIVLGLTAVFGALGWILRHRR
                     HHPHHFGYSLLALLLALGSVDASPAFRQITELVKSQSRDGDPDFAAYYKEPSKTIPDP
                     KLNLVYIYGESLERTYFDNEAFPDLTPELGALKNEGLDFSHTQQLPGTDYTIAGMVAS
                     QCGIPLFAPFEGNASASVSSFFPQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKS
                     HGFDHLYGSEELKSVVADPHYRNDWGFYDDTVLDEAWKKFEELSRSGQRFSLFTLTVD
                     THHPDGFISRTCNRKKYDFDGKPNQSFSAVSCSQENIAAFINKIKASPWFKDTVIVVS
                     SDHLAMNNTAWKYLNKQDRNNLFFVIRGDKPQQETLAVKRNTMDNGATVLDILGGDNY
                     LGLGRSSLSGQSMSEIFLNIKEKTLAWKPDIIRLWKFPKEMKEFTIDQQKNMIAFSGS
                     HFRLPLLLRVSDKRVEPLPESEYSAPLRFQLADFAPRDNFVWVDRCYKMAQLWAPELA
                     LSTDWCVSQGQLGGQQIVQHVDKTTWQGKTAFKDTVIDMARYKGNVDTLKIVDNDIRY
                     KADSFIFNVAGAPEEVKQFSGISRPESWGRWSNAQLGDEVKIEYKHPLPKKFDLVITA
                     KAYGNNASRPIPVRVGNEEQTLVLGNEVTTTTLHFDNPTDADTLVIVPPEPVSTNEGN
                     ILGHSPRKLGIGMVEIKVVEREG"
     gene            complement(9066..10088)
                     /locus_tag="JN078_003112"
     CDS             complement(9066..10088)
                     /locus_tag="JN078_003112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase family
                     protein"
                     /protein_id="HAY9042233.1"
                     /translation="MSTMNVLICQQPKELVWKQREIPIPGDNEALIKIKSVGICGTDI
                     HAWGGNQPFFSYPRVLGHEICGEIVRLGKNIADLKNGLQVAVIPYVACQQCPACKSGR
                     TNCCEKISVIGVHQDGGFSEYLSVPVANILPADGIDPQAAALIEPFAISAHAVRRAAI
                     APGEQVLVVGAGPIGLGAAAIAKADGAQVVVADTSPARREHVATRLELPLLDPSAEDF
                     DAQLRAQFGGSLAQKVIDATGNQHAMNNTVNLIRHGGTVVFVGLFKGELQFSDPEFHK
                     KETTMMGSRNATPEDFAKVGRLMAEGKITADMMLTHRYPFATLAETYERDVINNRELI
                     KGVITF"
     gene            10227..11141
                     /locus_tag="JN078_003113"
     CDS             10227..11141
                     /locus_tag="JN078_003113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313344.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAY9042234.1"
                     /translation="MSRSQNLRHNVINQVIDDMARGHIPSPLPSQSALAEMYNISRTT
                     VRHILSHLRECGVLTQVGNDYVIARKPDHDDGFACTTASMSEQNKVFEQAFFTLINQR
                     QLRPGETFSELQLARAAGVSPVVVREYLLKFGRYNLIQSEKRGQWSMKQFDQSYAEQL
                     FELREMLETHSLQHFLNLPDHDPRWLQAKTMLERHRLLRDNIGNSFRMFSQLDRDFHS
                     LLLSAADNIFFDQSLEIISVIFHFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLD
                     ATLALRNHLNSAKQSMIRSINENTRYAH"
     gene            11356..>11825
                     /locus_tag="JN078_003114"
     CDS             11356..>11825
                     /locus_tag="JN078_003114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9042235.1"
                     /translation="MEKENITIDPRSSFTPSSSADIPVPPDGLVQRSTRIKRIQTTAM
                     LLLFFAAVINYLDRSSLSVANLTIREELGLSATEIGALLSVFSLAYGIAQLPCGPLLD
                     RKGPRLMLGLGMFFWSLFQAMSGMVHNFTQFVLVRIGMGIGEAPMNPCGVKVIN"
BASE COUNT         3070 a         3015 c         2766 g         2974 t
ORIGIN      
        1 tatctttact tcctttcttg tttcttcctt gatttttcat ccctgattca aattcattat
       61 catcagcatg atggcagcaa taagcgccag gcacgatggt agcaaaacgt aatgccgtaa
      121 ctgtttgtga tacagcatca ccggcgtcaa tactaatccc atcagaatga caatccgcca
      181 ctgatccggc gataaatccg catacatcag ccctgcaatc agcaatcccg gcagcaacac
      241 tccccagcca ctgcccagcg tacgttgcaa catggtttca tctctttcat tgataatgat
      301 aactaatatc atatgataat ttttatcatt tgcaagccag agaaatccct tgctatcggg
      361 taaacctatc gctaggatta gcaatcatta tcatttagat tactatcccg attatggcct
      421 atcgttccgc accgctctat gaagatatca tctggcgaac gcatctccag ccgcaggatg
      481 ctgggcttgc acaagccgta cgtgcgacga tcgccaaaca tcgtgaacat ttgctcgagt
      541 ttatccgcct ggatgaaccc gctccgctta acgccatgac gctggcgcaa tggtcatcac
      601 cgaatgcgct aagttctcta ctcgcggtct attccgatca tatctatcgc aaccaaccaa
      661 cgatgatccg cgagaacaaa ccgctgatct cactatgggc acaatggtat atcggcctga
      721 tggtgccacc attaatgctg gcgctactga cgcaggaaaa ggcattagat gtgtcgccgg
      781 aacatttcca tgctgagttt cacgaaaccg gacgcgtcgc ctgtttctgg gtcgatgtgt
      841 gtgaagataa aaacgcaaca ccacattcgc cgcagcagcg aatggaaacg ttaatcagcc
      901 aggctctggt tccggttgtg caggcactag aagcgaccgg agagatcaac ggcaaactta
      961 tctggagtaa taccggttat ttgatcaact ggtatctcac tgagatgaag caactgctcg
     1021 gcgaggcgac ggttgaatcg ctgcgccatg ccctcttttt tgagaaaacg ctcacgaacg
     1081 gtgaagataa tccactctgg cgtaccgtcg tgctgcgcga tggcctgctg gtgcgccgaa
     1141 cctgctgcca gcgttatcgc ttaccggatg tgcagcaatg tggcgattgt acgctgaaat
     1201 gaaagcactg ccggggaagt aaacccggca tcatgcggat taatagggat gcaacacatt
     1261 acttgcttcg caatgccgca tacataacag aatatctgcg gcctccaaca cccctgcatc
     1321 agaactgacg cccagtttcg acatcacatt aaatttatgt gcacggatcg ttttgatatt
     1381 gcgtttaagc tgctcggcaa tttgtgtcat tgagtagcca cgcgacataa agcgcaatat
     1441 ttctctctcc gtcgggctta gcgtccggct ttggttaatg taccactgat tgttcagtcg
     1501 gtcggtcgcc tgacgtacac catttaatga caaaaagagt tcctgatgaa aaatctccag
     1561 cgttgacgct ttacttaata caccgtccag cggtgatggc gacaatgaac caatcagccg
     1621 agcttcaata tcatcatccg caataactaa acgccgggta cgcggaaact taatcgccag
     1681 ttcagtcagg caagataatc cctctctgcg ctcacttctc atggcagaaa aagaaaaatg
     1741 accgccgcaa atgagatccg cgacatggca tcctgaaatg actcctgact ggtataggta
     1801 tggagcttat aagggttacc cgcaaacttt ctgaataaac tctcaatacc gatactgctc
     1861 atgacgcatt tttctatgag tgcgacattt ctcttcttaa ttcggctgtg ttccattctg
     1921 cggcatctcc ataaacagaa ggcaagttaa gttctcttgc accctgcgcg ctatttatcc
     1981 atgcatacat ttcagcgttg ctgtgaattg ccagtcgacg catcgcactg tttttttggg
     2041 cgctgatagt tttattactt ttcttaagca acgaaactat ctggttgatg ccccatcctt
     2101 tacctaatag ccgcagtacc ttgcgctctg aaagagtgag aatgacggag cgatagctaa
     2161 aatcatgagt ttcattcatt gccggagagg tcagcatggc gctgatacgc tctgcgtgcg
     2221 tattgccgga acgtacggtc ttgaccagat tctcaatggg ttcaacatca gacaataacg
     2281 tcgccgtagg gcacatgagc aattctactg cctgggaata ccaggagcgt gacaccatga
     2341 aaacccagtg aatttcccga tattgtgaga ttaaagaata ataatgttca caaacagaac
     2401 gtggatcttc actttcaccg gctaaatcag caatgactaa tccggaacga cgtaattgta
     2461 ataaggtaaa gtcctccgca gaggcgctgg atattatttc atattcaggg aagtgagtcc
     2521 tcatgacctc ttttaaccct gcttgcataa caggtatttt actgataaca attccatttt
     2581 tgcagcatcc tggcaacata tttcctccac atccactgtc taaaaatcat gatggtttat
     2641 tcaggatatt cattccttaa atgtttccag caaattaata gattaagcga ataaattatc
     2701 cttagcattc actttcatat cagcatactc ctgctgcaca acaactccac tgcatgtgtc
     2761 agaaggttag catcaaatga taacctggtg aaatagcctg gagacattta aaatatctac
     2821 attaagttgt taggaatact taatgaaaaa cagaaatcac attcatttaa tttataatta
     2881 aatgatatcc cttcccgcag aatgaaaagt cacacaacca atatttattc aatgaaatct
     2941 gatggtttta acttgttaac attaaaaaac gtgcccggtt atctattatc ctgattcgta
     3001 aaggccaaac aataaattca ttatagtgat aatattcatg tgatagtttg tttgcggcga
     3061 gagataattc gctttttatc accgagcttg tcccgataac caggattaat cagcgcaatt
     3121 ttgatcttaa cctaccgcaa aacaaccgtg cttcatgata caaatggatt ctcattatct
     3181 gaacaatacg cagcacgtct atgacaaagg gcgagttatg caaactgagc aacagcgagc
     3241 cgtaacacgg ctttgtatcc agtgtggatt atttcttttg caacatggtg cggaaagcgc
     3301 gttggttgat gagctttcct cacgactggg tcgggcgttg gggatggaca gcgtcgaaag
     3361 ttctatctct tcgaacgcca tagtgctgac aaccattaaa gatgggcaat gcctgacatc
     3421 gacacgtaaa aatcacgatc gcggcattaa tatgcatgtg gtgactgaag tccagcacat
     3481 tgtgattctg gcggagcacc atctgctgga ttacaaaggc gtagagaaac gatttagcca
     3541 aattcagcca ttacgttacc caagatggct ggtagcctta atggttggcc tttcttgcgc
     3601 ctgtttctgc aaactcaata aaggtggctg ggatggtgcc atcatcacct tctttgccag
     3661 tacggccgcg atgtatatcc gccagctgct ggcacaacgt catcttcatc cgcagatcaa
     3721 cttttgcctc accgctttcg ccgccaccac catttccgga ttgcttttgc aacttcccac
     3781 tttcagcaat acacccacta tcgcgatggc cgccagcgtt ctgctgctgg tgccgggatt
     3841 tccgttgatt aatgccgtcg ccgatatgtt taaaggccac atcaataccg gactggcacg
     3901 ctgggcgatc gccagtctgc tgacactggc tacctgcgtc ggcgtggtga tggcactgac
     3961 gatttggggg ctacgcggat gggtgtgatc gagtttctgt ttgcattggc gcaggatatg
     4021 atcctcgccg ccattccagc ggtcggcttt gcgatggtgt tcaacgttcc cgttcgggca
     4081 ttacgctggt gtgcgctgct tggcgcgatt ggtcatggtt cacgaatgat cttaatgacc
     4141 agagggctga atattgagtg gtcaaccttt atggcctcca tgctggtcgg caccattggt
     4201 attcaatggt cgcgctggta tctggcgcat ccgaaagtgt ttaccgtggc ggctgttatc
     4261 cctatgttcc cgggcatatc ggcttatacc gcaatgattt cggcggtaaa aatcagccag
     4321 ttaggttaca gcgaaccgtt gatgattacc ctgttaacca actttcttac agcttcatcg
     4381 attgttggtg cgttatccat cggtctttcc attcctggat tatggttgta ccgcaagcgc
     4441 cctcgcgtat aaaattgcct cgcttaaagc acacggatga gagacagcct cctctcctcc
     4501 gtgtgttact ataaaagtta tctcccttct cgttcatcgt tccatatttg agaaacagta
     4561 tgtcttccag agttttgacc ccggacgtcg ttggtattga cgccctggta cacgatcacc
     4621 aaaccgttct ggcaaaagct gaaggcggtg tggttgccgt atttgctaac aatgccccgg
     4681 cgttttatgc cgtcacgcct gcacgcctgg ctgaactgct ggcgctggaa gaaaagctgg
     4741 cgcgtccggg aagcgatgtc gctctggacg atcaactcta tcaggaaccg caagccgctc
     4801 ccgttgctgt acccatgggg aaattcgcca tgtatccgga ctggcaaccc gatgccgatt
     4861 ttatccgcct ggcggcgcta tggggtgtgg cactaagaga gccggtgacc accgaagaac
     4921 tggcctcatt cattgcctac tggcaggcgg aaggtaaagt ctttcaccat gtgcagtggc
     4981 aacaaaaact ggcgcgcagc ctgcaaatcg gtcgtgccag caacggcgga ctgccgaaac
     5041 gagatgtgaa tacggtcagc gaacctgaca gtcaaattcc accaggattc agagggtaac
     5101 gatgaaaaac gttggcgacc tgatgcaacg cctgcaaaaa atgatgcctg cccatatcaa
     5161 acctgcattc aaaacgggtg aagaactact ggcctggcag aaagaacaag gagcgatccg
     5221 ctccgccgct ctcgaacgtg aaaatcgggc gatgaaaatg cagcgcacct ttaaccgctc
     5281 cggtattcgg ccactgcatc agaactgctc ctttgagaac tatcgcgttg agtgtgaagg
     5341 gcagatgaat gcgttaagca aagcgcgcca gtacgtcgaa gagtttgacg gcaacatcgc
     5401 cagcttcatc ttttctggta agccaggaac cggcaaaaac catctggcgg cggcaatctg
     5461 caacgagctg ctgctacgcg gtaaatccgt attgatcatc accgtggccg atattatgtc
     5521 ggcgatgaaa gataccttca ggaatagcgg taccagtgaa gaacaactgc ttaacgatct
     5581 gagcaacgtt gatctgctgg tgatcgatga gatcggcgtg cagaccgaat cgaaatacga
     5641 aaaagtgatc atcaaccaga tcgtcgatcg ccgctcttct tccaaacgcc caaccgggat
     5701 gctgaccaac agtaatatgg aagagatgac caagttgctg ggcgaacgcg tgatggaccg
     5761 tatgcgcctg ggtaacagtt tgtgggtgat cttcaactgg gatagctacc gtagccgggt
     5821 aacaggtaaa gagtattaat ccccgtttct ggcggtatac tgcgacacaa ttccaccttg
     5881 agtaatgatg atggaaactg ttaaacatct tctgtgctgt gccattgccg ccagcgcatt
     5941 aatttccacc ggggtgcatg ctgcgtcctg gaaagatgcg ctctccagcg ccgccagcga
     6001 acttggcaac caaaacagca cgacacagga aggcggttgg tcgctcgcgt cattaactaa
     6061 cttgcttagc agcgggaacc aggccttaag cgcagataac atgaacaacg ccgcaggcat
     6121 tctgcaatac tgcgcgaagc aaaagctggc gtcggtaacc gatgccgaaa acatcaagaa
     6181 ccaggtgctg gaaaagctgg gcctgaacag tgaagagcaa aaagaagaca ccaactatct
     6241 ggatggcatt cagggtttgc tgaaaaccaa agatggtcag caactcaatc tggataacat
     6301 cggaacgact ccgctggcag aaaaggtgaa aaccaaagcc tgcgatctgg tgttaaagca
     6361 ggggctgaac ttcatttcct gaaccgcgaa acgccgcgtt ttagctgtta cccggctgac
     6421 gcggctctct cctgcccttt tccctgcttc tggacggttt tccccctgtt acacgggaag
     6481 cgaccgcgat caaaaaagtc tgtttataaa ctaattccta acaacatcgc atttttttga
     6541 cactagaatt gcagcaatat ggcgacgcca ttacattgtt cttctcaaaa agcttaaacg
     6601 ttggctaaac ggcccggttt agtgaggatc gcccgttgtc agaactactc tctttcgccc
     6661 tttttctcgc ctctgtgctg atttacgcat ggaaagcggg acgtaacacc tggtggtttg
     6721 cagccacatt aacggtgctg gggctatttg tcgttttaaa tatcaccctg tttgccagcg
     6781 actattttac tggcgatggt attaacgacg cggttctcta taccttaacc aacagcctga
     6841 ccggtgctgg cgtcagcaaa tacatcctgc cgggtatcgg cattgtgctg gggctgacag
     6901 cggtgttcgg tgcgctgggc tggatcctgc gccatcgtcg ccatcatccg caccattttg
     6961 gttacagcct gctggcgctc ttactggcgc tgggttcggt ggacgccagc ccggcatttc
     7021 gtcagataac ggaactggtg aaatcccagt cacgcgatgg cgacccggac tttgcggctt
     7081 attataaaga gccgtcgaaa actatccctg acccgaaact caacctggtt tatatctacg
     7141 gcgaaagtct cgagcggacc tattttgata acgaagcttt cccggatctc acgcctgaac
     7201 tgggcgcgtt gaaaaatgaa ggcctggatt tcagccacac gcagcagctg ccaggaacgg
     7261 attacacgat tgcgggcatg gtggcttctc agtgcggcat accgctgttt gccccctttg
     7321 aaggcaacgc ctccgcctct gtctccagct tcttcccgca gaacatctgt ctgggcgata
     7381 tcctgaaaaa ctcgggttat cagaactatt tcgtgcaggg cgcgaatctg cgttttgccg
     7441 gtaaagatgt gttcctgaag tcgcatggct tcgaccactt atacggctca gaagagctga
     7501 aaagcgtggt ggccgacccg cactatcgca acgactgggg attctacgac gataccgttc
     7561 tcgatgaagc gtggaaaaag tttgaagagc tttcccgctc aggtcagcga ttctcactgt
     7621 ttaccctgac agtcgatacc catcacccgg atggttttat ctcgcgtacc tgtaaccgca
     7681 aaaaatatga ttttgacggt aagccgaacc agtcattcag cgcggtaagt tgcagccagg
     7741 agaatatcgc ggcgtttatc aacaaaatca aagcgtcacc gtggtttaaa gataccgtca
     7801 tcgtcgtctc ttctgaccat ttagcgatga acaacacggc gtggaaatac ctcaataagc
     7861 aggatcgcaa taacctgttt tttgtcattc gtggcgacaa gccgcagcaa gagacgctgg
     7921 cagtgaagcg taacacgatg gataacggcg cgacggtgct ggacattctc ggtggcgata
     7981 actatctcgg acttggtcgt agcagtttat ccgggcagtc gatgtcggaa atcttcctca
     8041 atatcaaaga gaaaacattg gcgtggaagc cggatatcat ccgcctgtgg aaattcccta
     8101 aagagatgaa agagttcacc atcgaccagc agaaaaacat gattgccttc tcgggtagcc
     8161 atttccgttt gccgctgctg ttgcgggttt cagacaaacg cgtggaaccg ctgccggaaa
     8221 gcgaatactc agcaccgctg cgtttccagc tggccgattt cgctccacgc gacaatttcg
     8281 tctgggttga ccgttgctat aagatggcac aactctgggc tccggaactg gcactctcca
     8341 ccgactggtg tgtctcgcaa gggcagcttg gcggtcagca aattgttcaa catgttgaca
     8401 aaacaacatg gcagggcaaa acggcattta aagatacggt catcgacatg gcgcgttata
     8461 aaggcaatgt cgatacgctg aaaattgttg ataacgatat tcgctacaaa gccgacagtt
     8521 tcatcttcaa cgtcgccggt gcgccagaag aggtgaaaca gtttagtggg atttcccgtc
     8581 cagagtcgtg gggccgctgg tccaacgcgc agctgggcga tgaagtaaaa atcgagtaca
     8641 agcatccgct gccaaagaaa tttgacctgg tgattaccgc caaagcatac ggcaataacg
     8701 ccagccgtcc tattccggta cgcgtaggca atgaagaaca aacccttgtg ctgggcaatg
     8761 aagtgaccac caccacactg catttcgata acccaaccga tgccgacaca ctggtaattg
     8821 tgccgccgga acctgtctca accaacgaag ggaatatcct cggacactcg ccacgtaagc
     8881 tcgggatcgg catggtggaa attaaagtgg tggaacgtga aggataattc ctgactgatg
     8941 tgtaggtcgc ataaggtgcg acctacacac cttctgcggc ctacaaaaca tcattgagaa
     9001 acagaaaaaa acagcgccca acacttcccc ggacgctgca tggcaacttt aataatctcg
     9061 ccttatcaga aagtaattac acccttaatc aactcacgat tgttaatcac atcgcgctcg
     9121 taggtttctg ccagcgtggc gaacggatag cgatgggtta acatcatgtc agcagtgatt
     9181 tttccttccg ccatcagtcg accgacttta gcaaaatctt ccggcgtggc gttgcggcta
     9241 cccatcatcg tcgtttcttt tttatggaat tccggatcgg agaactgcaa ctcaccttta
     9301 aacaggccga caaataccac cgtgccgccg tgacgaatca aattcacggt gttattcatc
     9361 gcatgttgat tacctgtcgc gtcgatcact ttctgcgcca gcgaaccacc aaactgcgcc
     9421 cgtagctgcg cgtcaaaatc ttcggctgac gggtccagta aaggtaattc cagacgcgtt
     9481 gccacatgtt cacggcgcgc cggactggta tccgccacca ccacctgtgc gccatcggct
     9541 ttagcgattg ccgccgcgcc cagaccgatt ggccccgccc cgaccaccag cacctgctcg
     9601 ccgggagcaa tggctgcgcg acgcaccgca tgagcgctaa tagcgaaagg ttcaatcaat
     9661 gctgccgcct gcgggtcaat accgtctgcg ggcaaaatgt tcgccaccgg cacgctcaaa
     9721 tactcactaa aaccgccatc ctgatgcacg ccaatgactg aaattttttc acagcaattg
     9781 gtacgcccgc ttttacacgc cgggcattgc tgacaggcaa cataagggat cacagcaact
     9841 tgcagaccat ttttaagatc agcaatattt ttacccagcc taacaatctc cccacatatt
     9901 tcatggccta aaacacgtgg ataactaaaa aatggttgat ttccacccca ggcatgaata
     9961 tcggtaccgc aaatcccgac agacttaatt tttattaatg cttcattgtc acccggaata
    10021 ggtatctcgc gttgtttcca gactaattct ttcggctgct ggcaaattaa aacattcatc
    10081 gtagacatga ttcggctctc cattttttgt tgccttagat atcaatgaaa atgaaaaatg
    10141 gcagcggaac ggaaaatctg ttttgtgaaa acacacgcat aaaaatgttt taaatcgggt
    10201 tttaatggac tcacaaggag gaaaatatga gtcgttcaca aaatttacgc cacaatgtga
    10261 ttaaccaggt cattgatgat atggcgcggg gtcatatccc ttccccactt ccatcgcaaa
    10321 gtgcgctggc ggaaatgtac aacatcagcc gcaccacagt gcgtcatatt ctcagccatt
    10381 tacgcgaatg cggcgtcttg acgcaggttg gaaacgacta tgttattgcg cgtaaacctg
    10441 accacgatga cggtttcgcc tgtactaccg cttcaatgag tgaacaaaac aaagtgtttg
    10501 agcaggcttt tttcacgctg ataaaccagc gccagttacg cccaggggaa actttttctg
    10561 aactgcaact ggctcgggcc gcgggtgtca gcccggtggt tgtaagagaa tatcttttaa
    10621 aattcggccg ttataatctt attcaaagcg aaaagcgcgg ccagtggagc atgaagcaat
    10681 tcgatcaatc ctacgccgag cagctgtttg agctacgcga aatgctcgaa acacattcac
    10741 ttcagcactt tctcaacctg cctgatcatg atccccgctg gctgcaggcg aaaaccatgc
    10801 tcgaacgtca tcggctactg cgtgacaaca tcggcaatag ctttcgcatg ttctcgcaac
    10861 ttgacagaga ttttcactcc ttactgcttt cagctgccga caatatcttt tttgatcaat
    10921 cgcttgagat catctcagtc atctttcatt ttcactatca atgggacgaa agcgatctta
    10981 aacagcgcaa tatcattgcc gtcgatgagc atatgaccat tctcagcgct ctgatttgcc
    11041 gcagtgacct cgatgccacc cttgcgctcc gtaaccattt gaattcagct aaacaatcaa
    11101 tgattcgatc cattaatgag aacacgcgtt atgctcatta agtacggatt aaaaacagca
    11161 aactattagc gggtgcacgg ttttatcaaa agataaatac cgggaaattc ccgcttacct
    11221 atgctcacaa tcagtcgact aaaaatgttt ttgtgagcgg tagtaaagtc ctaaaacttt
    11281 aacctgccgt taatgtcaac cttgcgtaat gcacaattac gtaaacaatt aaaattataa
    11341 atacaggagt ccggcgtgga aaaagaaaat atcaccatcg atccgcgttc ttcatttact
    11401 ccatcttcgt cggcagatat tcccgtgcca ccagatggat tagttcaacg cagtacccga
    11461 attaaacgca ttcaaaccac cgccatgttg ttattatttt ttgcggcggt aatcaattat
    11521 ctcgaccgca gttcgctgtc ggtagcaaat ttaacgattc gtgaagaatt gggattaagt
    11581 gccactgaaa tcggcgcttt gctctccgtg ttttcactcg cttacgggat tgcgcaactt
    11641 ccttgcggcc cactattgga tcgtaaaggc ccacgcctga tgctgggact ggggatgttc
    11701 ttctggtcac tgttccaggc aatgtctggc atggtgcaca actttacgca gttcgtgttg
    11761 gtgcgtatcg gtatggggat tggtgaagcg ccgatgaacc catgcggtgt aaaagtcatt
    11821 aacga
//
LOCUS       DADMJB010000131        11796 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.131, whole genome shotgun sequence.
ACCESSION   DADMJB010000131 DADMJB010000000
VERSION     DADMJB010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11796)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11796)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11796
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.131"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            488..1144
                     /gene="pphA"
                     /locus_tag="JN078_003115"
     CDS             488..1144
                     /gene="pphA"
                     /locus_tag="JN078_003115"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-serine/threonine phosphatase"
                     /protein_id="HAY9042236.1"
                     /translation="MKQPAPVYQRIAGHQWRHIWLSGDIHGCLEQLRRKLWHCRFDPW
                     RDLLISVGDVIDRGPQSLRCLQLLEQHWVCAVRGNHEQMAMDALASQQMSLWLMNGGD
                     WFIALADNQQKQAKTALEKCQHLPFILEVHSRTGKHVIAHADYPDDVYEWQKDVDLHQ
                     VLWSRSRLGERQKGQGITGADHFWFGHTPLRHRVDIGNLHYIDTGAVFGGELTLVQLQ
                     "
     gene            complement(1145..1420)
                     /locus_tag="JN078_003116"
     CDS             complement(1145..1420)
                     /locus_tag="JN078_003116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebW family protein"
                     /protein_id="HAY9042237.1"
                     /translation="MAGYLSWLFPRCKISPKLNGTAPHFGDEMFALVLFVCYLDGGCE
                     DIVVDVYNTEQQCLYSMSDQRIRQGGCFPIEDFIDGFWRPAQEYGDF"
     gene            complement(1441..1677)
                     /locus_tag="JN078_003117"
     CDS             complement(1441..1677)
                     /locus_tag="JN078_003117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707284.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1480 family protein"
                     /protein_id="HAY9042238.1"
                     /translation="MKTSVRIGAFEIDDGELHGESPGDRTLTIPCKSDPDLCMQLDAW
                     DAETSIPALLNGEHSVLYRTRYDQQSDAWIMRLA"
     gene            complement(1795..3234)
                     /gene="rsmF"
                     /locus_tag="JN078_003118"
     CDS             complement(1795..3234)
                     /gene="rsmF"
                     /locus_tag="JN078_003118"
                     /EC_number="2.1.1.178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416349.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1407)-C(5))-methyltransferase
                     RsmF"
                     /protein_id="HAY9042239.1"
                     /translation="MAQHTVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVN
                     TLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEA
                     SSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHA
                     NISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESN
                     QEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGD
                     LFPGANKALTEEGFLHVFPQIYDCEGFFVARLRKTQAIPALPAPKYKVGNFPFSPVKD
                     REAGQIRQAAAGVGLNWDENLRLWQRDKELWLFPVDIEALIGKVRFSRLGIKLAETHN
                     KGYRWQHEAVIALATPDNVNAFELTPQEAEEWYRGRDVYPQAAPVADDVLVTFQHQPI
                     GLAKRIGSRLKNSYPRELVRDGKLFTGNA"
     gene            complement(3314..5947)
                     /gene="yebT"
                     /locus_tag="JN078_003119"
     CDS             complement(3314..5947)
                     /gene="yebT"
                     /locus_tag="JN078_003119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416348.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-binding membrane homeostasis protein YebT"
                     /protein_id="HAY9042240.1"
                     /translation="MSQETPASTTEAQIKNKRRISPFWLLPFIALMIAGWLIWDSYQD
                     RSNTVTIDFMSADGIVPGRTPVRYQGVEVGTVQDISLSDDLRKIEVKVSIKSDMKDAL
                     REETQFWLVTPKASLAGVSGLDALVGGNYIGMMPGTGKEQDHFVALDTQPKYRLNNGD
                     LMIHLQAPDLGSLNSGSLVYFRKIPVGKVYDYAINPNKQGVVIDVLIERRFTDLVKKG
                     SRFWNVSGVDANVSISGAKVKLESLAALVNGAIAFDSPEESKPAEAEDTFGLYEDLAH
                     SQRGVIIKLELPSGAGLTADSTPLMYQGLEVGQLTKLDLNPGGKVTGEMTVDPSVVTL
                     LRENTRIELRNPKLSLSDANLSALLTGKTFELVPGDGEPRKEFVVVPGEKALLHEPDV
                     LTLTLTAPESYGIDTGQPLILHGVQVGQVIDRKLTSKGVTFTVAIEPQHRELVKGDSK
                     FVVNSRVDVKVGLDGVEFLGASASEWINGGIRILPGDKGEMKASYPLYANLEKALENS
                     LSDLPTTTVSLSAETLPDVQAGSVVLYRKFEVGEVITVRPRANAFDIDLHIKPEYRNL
                     LTSNSVFWAEGGAKVQLNGSGLTVQASPLSRALKGAISFDNLSGASASQRKGDKRILY
                     ASETAARAVSGQITLHAFDAGKLAVGMPIRYLGIDIGQIQTLDLITARNEVQAKAVLY
                     PEYVQTFARGGTRFSVVTPQISATGVEHLDTILQPYINVEPGRGNPRRDFELQEATIT
                     DSRYLDGLSIIVEAPEAGSLGIGTPVLFRGLEVGTVTGMTLGTLSDRVMIAMRISKRY
                     QHLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGIAFATPPGTPLAPKAQEGK
                     HFLLQESEPKEWREWGTALPK"
     gene            complement(5916..7199)
                     /gene="yebS"
                     /locus_tag="JN078_003120"
     CDS             complement(5916..7199)
                     /gene="yebS"
                     /locus_tag="JN078_003120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity lipid transport subunit YebS"
                     /protein_id="HAY9042241.1"
                     /translation="MALNTPQITPTKKITVRSIGEELPRGDYQRCPQCDMLFSLPEIN
                     SHQSAYCPRCQAKIRDGRDWSLTRLAAMAFTMLLLMPFAWGEPLLHIWLLGIRIDANV
                     MQGIWQMTKQGDTITGAMVFFCVIGAPLILVSSIAYLWFGNRLGMNLRPVLLMLERLK
                     EWVMLDIYLVGIGVASIKVQDYAHIQAGVGLFSFVALVILTTVTLSHLNVEELWERYY
                     PQRPATRRDEKLRVCLGCHFTGYPDQRGRCPRCHIPLRLRRRHSLQKCWAALLASIVL
                     LLPANLLPISIIYLNGGRQEDTILSGIMSLASSNIAVAGIVFIASILVPFTKVIVMFT
                     LLLSIHFKCQQGLRTRILLLRMVTWIGRWSMLDLFVISLTMSLINRDQILAFTMGPAA
                     FYFGAAVILTILAVEWLDSRLLWDAHESGNARFDD"
     gene            7329..7826
                     /locus_tag="JN078_003121"
     CDS             7329..7826
                     /locus_tag="JN078_003121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HAY9042242.1"
                     /translation="MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDVNW
                     AGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHAFDGHIACDA
                     ASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFF
                     ASVAG"
     gene            7923..8621
                     /gene="proQ"
                     /locus_tag="JN078_003122"
     CDS             7923..8621
                     /gene="proQ"
                     /locus_tag="JN078_003122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707288.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone ProQ"
                     /protein_id="HAY9042243.1"
                     /translation="MENQPKLNSSKEVIAFLAERFPHCFSAEGEARPLKIGIFQDLVD
                     RVAGEMNLSKTQLRSALRLYTSSWRYLYGVKPGATRVDLDGNPCGELDEQHVEHARKQ
                     LEEAKARVQAQRAEQQAKKREAAAAAGEKEDAPRRERKPRPTTPRRKEGAERKPRAQK
                     PVEKAPKTVKAPREEQHTPVSDISALTVGQALKVKAGQNAMDATVLEITKDGVRVQLN
                     SGMSLIVRAEHLVF"
     gene            8641..10689
                     /gene="prc"
                     /locus_tag="JN078_003123"
     CDS             8641..10689
                     /gene="prc"
                     /locus_tag="JN078_003123"
                     /EC_number="3.4.21.102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy terminal-processing peptidase"
                     /protein_id="HAY9042244.1"
                     /translation="MNMFFRLTALAGLLAIAGQTFAVEDITRADQIPVLKEETQHATV
                     SERVTSRFTRSHYRQFDLDQAFSAKIFDRYLNLLDYSHNVLLASDVEQFAKKKTELGD
                     ELRSGKLDVFYDLYNLAQKRRFERYQYALSVLEKPMDFTGNDTYNLDRSKAPWPKNEA
                     ELNALWDSKVKFDELSLKLAGKTDKEIRETLTRRYKFAIRRLAQTNSEDVFSLAMTAF
                     AREIDPHTNYLSPRNTEQFNTEMSLSLEGIGAVLQMDDDYTVINSMVAGGPAAKSKAI
                     SVGDKIVGVGQTGKPMVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRTVTLT
                     RERIRLEDRAVKMSVKTVGKEKVGVLDIPGFYVGLTDDVKVQLQKLEKQNVSSVIIDL
                     RSNGGGALTEAVSLSGLFIPAGPIVQVRDNNGKVREDSDTDGQVFYKGPLVVLVDRFS
                     ASASEIFAAAMQDYGRALVVGEPTFGKGTVQQYRSLNRIYDQMLRPEWPALGSVQYTI
                     QKFYRVNGGSTQRKGVTPDIIMPTGNEETETGEKFEDNALPWDSIDAATYVKSGDLTA
                     FGPELLKEHNARIAKDPEFQNIMKDIARFNAMKDKRNIVSLNYAVREKENNEDDATRL
                     ARLNERFKREGKPELKKLDDLPKDYQEPDPYLDETVNIALDLAKLEKARPAEQPAPVK
                     "
     gene            10881..11762
                     /gene="htpX"
                     /locus_tag="JN078_003124"
     CDS             10881..11762
                     /gene="htpX"
                     /locus_tag="JN078_003124"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014229823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HAY9042245.1"
                     /translation="MMRIALFLLTNLAVMVVFGLVLSLTGIQSSSVQGLMIMALLFGF
                     GGSFVSLLMSKWMALRSVGGEVIEQPRNERERWLVNTVATQARQAGIAMPQVAIYHAP
                     DINAFATGARRDASLVAVSTGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVN
                     TFVIFISRILAQLAAGFMGGNRDEGEESNGNPLIYFAVATVLELVFGILASIITMWFS
                     RHREFHADAGSAKLVGREKMIAALQRLKTSYEPQEATSMMAFCINGKSKSLSELFMTH
                     PPLDKRIEALRTGEYLK"
BASE COUNT         3032 a         2906 c         3045 g         2813 t
ORIGIN      
        1 tcgcaacccc aaatcgtaaa ggaaaccgta gcacgtcgta tgcaagaacg tgccacggct
       61 ggctgatgga tgttcgatag cgcgagtttg aatgaaaatc agccggagat gattttacat
      121 aattgctacg gaattattca atacaggaat tgcttgcgtc tgcatggatt gacctgaaat
      181 tttcccgaaa atttctctaa aaaactcgaa aaaaatggta actggttgaa tgtattaata
      241 tgcaatggta cgtgtcaggg attaaaagat gaacgtaaat ttattcaacg cattaatttt
      301 aaagggtttt attgtttgtt gacgaaaaca ggaatcgtgt tcggtctctt tttatctgtt
      361 aaaagccaga agcatttcct tcgctgactt tatagtcaac cataacacac actctactgt
      421 ctgagtccag cgttttttaa cattcttgtt aagattatgt gatctttagc acgggaggaa
      481 aatattgatg aaacagcctg cgcccgttta tcagagaatt gcgggtcatc aatggcgaca
      541 tatctggctt tctggcgata tacacggttg tcttgagcag ttgcgccgca aattatggca
      601 ttgtcgtttt gatccgtggc gagatttact tatctcagtg ggagacgtta tcgatcgtgg
      661 gccgcaaagt ttacgttgtc tgcagttact ggaacaacat tgggtttgtg cggtaagagg
      721 caatcatgaa cagatggcga tggatgcgct ggcatcccag cagatgtctt tgtggttgat
      781 gaatggcggc gactggttta ttgcgctggc agataatcaa cagaaacaag cgaaaacggc
      841 gctggaaaaa tgtcagcatt tgccctttat tcttgaagta cacagtcgca ccggcaagca
      901 tgttattgct catgcggatt atccagatga tgtttatgaa tggcaaaagg acgttgattt
      961 gcatcaggtc ttgtggagcc gctcgcgatt aggtgaacgc caaaaagggc agggaattac
     1021 aggtgctgat catttctggt ttggtcatac accgttgcga catcgcgtgg atattggcaa
     1081 cctgcattat attgataccg gtgctgtctt tgggggcgaa ctgactcttg tgcaattgca
     1141 atgattaaaa atcaccgtac tcctgtgcag gtcgccagaa accatctata aaatcctcaa
     1201 tcggaaaaca accgccctgg cggatccgtt gatcgctcat agaataaaga cactgctgtt
     1261 ccgtgttgta gacatccaca acaatatctt cacaaccgcc atccaggtag caaacaaaaa
     1321 gtaccagcgc gaacatttca tccccgaagt gtggtgccgt accgttaagt ttaggagaga
     1381 ttttacaacg ggggaataac caggacaaat aacccgccat gccgacgggt tctttttgga
     1441 tcaggcaaga cgcataatcc aggcatcaga ttgttgatcg taacgggtac ggtaaaggac
     1501 agagtgttcg ccatttagca gggcagggat actggtttca gcatcccagg catcgagttg
     1561 catacataaa tcggggtcag atttacaagg aatggttaac gttcgatcac ccggcgattc
     1621 accgtgtaat tcgccgtcgt cgatttcaaa agcgcctatg cgcacactgg ttttcatctt
     1681 cgtgctctcc atttagctgc cggttgtggt acgaccagtc cgatcgcacc atttttcagc
     1741 ctagttgagg cagccgaatg tgccagtcaa aaagtgcgct ttttttgtgc gctgtcaggc
     1801 gttaccggta aaaagtttcc catcgcgcac cagttcacgc ggatagctgt ttttcaatcg
     1861 cgaaccaatc cgtttggcta aaccaatcgg ttgatgctgg aaagtaacca acacgtcatc
     1921 cgccactggc gcggcttgcg ggtaaacatc gcgcccgcga taccactcct ccgcttcctg
     1981 cggtgtcagt tcaaaagcgt tcacattgtc gggggtggca agggcaataa ctgcttcatg
     2041 ctgccagcga taacctttgt tgtgcgtttc ggcaagttta atccccaagc gagaaaatcg
     2101 gactttaccg atcagggctt caatgtccac cgggaacaac cacagttctt tgtcacgctg
     2161 ccagaggcgc aggttttcat cccagtttaa gccaacacct gcagccgcct ggcgaatttg
     2221 tccagcttcg cgatctttca ccgggctgaa cggaaaatta ccgactttgt atttgggggc
     2281 gggtaaggcg ggaatcgcct gagttttacg cagacgagca acgaagaagc cttcgcagtc
     2341 gtaaatttgt gggaaaacat gcaaaaagcc ttcttcggtc agcgctttgt ttgcaccagg
     2401 gaagagatcg ccaagtggta aaaactctac tgcgtcgggg taagtctctt tcagccacag
     2461 gcaaacggct tcgttttctt cctggtttaa ggtacaggtc gagtaaacca gcgtaccacc
     2521 aggacgtaat gcatgaaagg cgctgtcgat aagctcccgt tgtgtagctg cgatttcctg
     2581 attgctttct ggtgaccagt tttttagcgc atcgggatct ttacgcacca cgccttcgcc
     2641 ggagcaggga gcgtccagca aaatggcatc aaacatttct ggcactgccg caccaaacac
     2701 gcggccatca aaatgtgtga gcgcaacatt actgatgcca cagcggctga tattggcatg
     2761 taacactttt acccgactgg cggaaaactc attggcaagg attgcccctt cgttattcat
     2821 ccgcgcggca atttgcgtcg tttttgagcc tggcgcagca gcgacatcca tcacccgctg
     2881 tggtgcatta ccgtcagcaa acaaggcggc gacgggcaac attgaactgg cttcctgaat
     2941 ataaaacagg ccacttaaat gctcggcggt actacccaat ggcaatgcat cttcattgtc
     3001 gcgttcaatc cagaaacctt cttcacacca cggaattggc gtaagcgtcc agccataagg
     3061 agcggttaat tgcaggaaat cagcaacgga gattttcagc gtattaacgc gaatgctgcg
     3121 gcgcaacggg cgctgacagg cggcaagaaa atcatcaaat gagagcgtcg aaggcatagc
     3181 ttcgcgcatt tgtgtcagaa acgcgtccgg gaaataaacg gtgtgttggg ccacgagcat
     3241 gtaccactgg caaaaaaaca ggcgcgcagt ttagcataaa cgctccggcg caggcacgcc
     3301 ggagcagtgg gcattatttg ggaagcgcag ttccccattc acgccactct ttcggttcac
     3361 tttcctgcaa caggaagtgt ttgccttcct gggctttcgg tgccagtggc gtacccggag
     3421 gcgtggcgaa ggcgatgccg ccacggataa actggttaaa ggtgccggtt ttcactacgc
     3481 cgcccgtcag accaaagtcc agactgtaac ccgatgccaa ccagaagacg gaattgttac
     3541 gcaccaggtg ttgatagcgt ttactgatgc gcatcgcaat catcacgcga tctgacaatg
     3601 tccccagcgt cattccggta accgtaccta cttccagacc acggaacagc acaggcgtac
     3661 caatacctaa cgaaccggct tccggtgctt cgacaataat gcttaagcca tccaggtaac
     3721 gcgaatcagt aatagtagct tcttgcaact caaagtcacg gcgaggatta ccccgacctg
     3781 gttcgacatt gatatacggc tggaggatag tatctagatg ctcaacgccc gtggctgaaa
     3841 tttgcggtgt gaccaccgag aagcgcgtac cgccgcgggc gaaggtctgg acatactccg
     3901 gatagagcac cgcctttgcc tgtacttcat tgcgcgcggt aatcagatcc agcgtctgga
     3961 tttgcccgat atcaataccg agatagcgaa ttggcatccc gaccgccagt tttccggcat
     4021 cgaaagcgtg aagcgtaatc tgcccactaa ccgcacgggc cgctgtttcg gaagcataca
     4081 gaattcgttt gtcgccttta cgctgactgg cgctggcacc gctgaggtta tcgaagctaa
     4141 tggctccctt taatgctctg gagagcgggg atgcctgtac ggtcaggcca ctaccattca
     4201 gctgaacttt cgccccgcct tctgcccaga acacgctatt gctggtcaga aggttgcgat
     4261 actccggctt aatatgcaga tcgatatcaa acgcgttagc tcgcggacgc acggtaatca
     4321 cttcaccaac ttcaaattta cggtacagca ctaccgatcc tgcctgcaca tccggcagcg
     4381 tctctgcact caaactcacg gttgtggtgg gtaaatcgct aaggctgttc tccagcgctt
     4441 tttccagatt ggcatacagt ggatagctgg ctttcatctc acctttatcg cctggcagaa
     4501 tacgtatccc gccgttaatc cattctgagg cgctggcacc aagaaactca acgccatcca
     4561 gccccacctt cacgtcgaca cggctgttga cgacaaattt gctatcgcct tttaccagtt
     4621 cgcgatgctg aggctcgatg gcgacggtaa aggtaacgcc tttgctggtg agtttacgat
     4681 caataacctg gcctacctgc acgccgtgaa gaatgagcgg ctgacccgta tcaataccgt
     4741 aactttccgg cgcggtcagg gtcagcgtca gaacatcagg ttcatgcagc agtgcttttt
     4801 cgcctggcac aacaacgaac tctttgcgtg gctcgccatc gccgggtacc aactcgaagg
     4861 ttttgccagt cagcagggcg ctgagattgg catcgctaag ggataatttc ggattacgta
     4921 attcgatgcg ggtattttca cgaagcaggg taacgacgct gggatcaact gtcatttccc
     4981 cagtgacttt accaccagga tttaaatcca gtttagttag ctgtccgact tccagtccct
     5041 gatacattaa tggcgtcgag tcggcggtta atccggcccc actcggcagt tccagtttga
     5101 ttattacgcc acgctggcta tgggcgaggt cttcatacag accaaaggta tcttccgcct
     5161 cggcaggttt cgactcttct ggtgaatcga aggcaatcgc accgttaacc agtgccgcca
     5221 ggctttccag tttcaccttc gcgccactga tactgacatt ggcatcaacg ccggaaacgt
     5281 tccagaaacg gctacctttt ttcaccagat cggtaaaacg ccgctcgatc aggacatcaa
     5341 tcaccacgcc ttgtttgttg ggattgatgg catagtcgta gacttttccc accgggatct
     5401 tgcggaaata gaccaatgaa ccgctgttca gcgaaccgag atcgggggct tgcaggtgga
     5461 tcatcagatc gccattgttc agccgatatt tcggttgggt atcgagtgcg acaaagtgat
     5521 cctgctcttt acctgtaccc ggcatcatgc cgatatagtt cccaccgacg agggcgtcca
     5581 gcccggagac acctgccaac gatgcttttg gcgtcaccag ccagaattga gtctcttcgc
     5641 gcagcgcatc tttcatatcg gacttgatgc tgaccttgac ttcaatctta cgaagatcgt
     5701 cgctgaggct gatatcctgc actgttccga cttcaacgcc ctgataacga acaggcgtac
     5761 ggcccgggac aataccatcc gccgacataa agtcgatggt gacggtatta cttcggtcct
     5821 gataactgtc ccaaatcagc caaccggcaa tcattagcgc gatgaaaggc agcagccaga
     5881 aaggtgagat acggcgttta tttttaatct gcgcttcagt cgtcgaagcg ggcgtttcct
     5941 gactcatgtg catcccaaag taagcggctg tccagccatt ccacagcaag aatagtcaaa
     6001 attacggctg cgccaaaata aaacgcagcc ggtcccatag taaaagcgag gatctgatcg
     6061 cgattaatca gcgacatggt taaagatatg acaaacaggt cgagcatcga ccagcgtcca
     6121 atccaggtca ccatccgcag taacagaatg cgtgtgcgta aaccttgctg gcatttaaaa
     6181 tgaatgctca acagtaaagt gaacatgacg atcactttag taaacggtac cagaatactg
     6241 gcgataaaca cgattccggc gaccgcaatg ttgctacttg ccagcgacat aatcccggaa
     6301 agaatcgtat cttcctgccg gccaccattc agataaatga tagaaatagg caataggttg
     6361 gctggtaaca acaaaacgat tgacgctaac agcgccgccc agcatttttg caaactatga
     6421 cgacgacgca ggcgtagcgg gatatggcaa cgcgggcagc gaccacgctg atcaggatag
     6481 ccggtaaaat ggcacccaag acagacacga agtttctcgt ccctacgcgt agcggggcgc
     6541 tgcggataat atcgctccca cagctcctca acattaagat gtgacaacgt caccgtcgtt
     6601 aaaatcacca acgccacaaa agagaacaag ccgacacccg cctggatatg ggcataatcc
     6661 tgtaccttta tagaagcaac gccaatgccg accaggtaga tatccagcat tacccactct
     6721 ttaagacgct caagcatcag cagtaccgga cgtaaattca ttcccagtcg gttaccaaac
     6781 cataaatatg ctatggagga caccagaatg aggggggcac caataacgca gaaaaagacc
     6841 atcgcccccg ttatcgtatc gccctgtttg gtcatttgcc agatgccttg catgacgttt
     6901 gcgtcgatac gaatacctaa cagccagata tgcaacagcg gttcgcccca ggcaaacggc
     6961 atcagcaaca gcatggtgaa agccattgcc gccaggcgcg ttagcgacca gtcgcgcccg
     7021 tcgcgaattt ttgcctgaca gcgcggacaa taggcactct gatgagaatt tatctcgggc
     7081 aggctaaaca gcatgtcaca ttgcgggcaa cgttggtaat caccacgcgg cagttcctcg
     7141 ccgattgacc tcactgttat cttttttgtc ggcgtaattt gtggtgtgtt aagagccatg
     7201 acgtgccaaa tgtaataaga attaacatta atcttaaccc atgatgggaa tgatcttgag
     7261 cattaacgca tttaatgctt attttaatag gctggcagtt ccaggtaaga caaacaagtg
     7321 attatataat gaacaaaaca gaattttacg cggatttaaa tcgcgacttt aacgcgctga
     7381 tggcgggaga aaccagtttt ctggcaacgc ttgcgaacac cagtgcgttg ttatacgagc
     7441 gtctcactga cgtaaactgg gcaggttttt atttgcttga ggacgataca ctggtactcg
     7501 gaccatttca gggcaaaatt gcctgtgtcc ggatacccgt cgggcgcggg gtgtgcggca
     7561 ctgcggttgc ccgcaatcaa gtgcagcgta tcgaggatgt tcacgcgttt gacgggcata
     7621 ttgcctgtga tgcggcgagt aattctgaaa ttgttctgcc gctggtggtg aaaaatcaga
     7681 ttattggtgt tcttgacatc gatagtaccg tcttcggtcg ctttacagac gaggacgagc
     7741 aaggcttacg tcagcttgtg gcacagcttg aaaaagtgct tgcaacgacg gattacaaaa
     7801 aattctttgc gagcgtcgca ggataatcaa cggataacgt agcatttact ggtagcgtca
     7861 ttataatgac gcctgttcat gcctgcgctt gttggctacg tccgttgtaa tcaggaaatt
     7921 tcatggaaaa tcaacctaag ttgaatagca gtaaagaagt aatcgcgttt ctggccgaac
     7981 gttttcccca ctgtttcagt gcggaaggtg aagcgcgtcc gctgaaaatc ggtatttttc
     8041 aggatttggt cgatcgtgtt gccggggaaa tgaacctgag caaaacgcaa ttacgatccg
     8101 ctttacgtct ctacacttcg agctggcgtt atctttacgg tgttaaaccc ggcgcaacgc
     8161 gtgtcgatct tgacggcaac ccatgcggtg agctggacga gcaacatgta gagcatgctc
     8221 gcaagcagct tgaagaagcg aaagcgcgtg ttcaggcaca gcgtgctgaa cagcaggcga
     8281 aaaaacgcga agctgccgca gctgctggtg agaaagaaga cgcaccgcgc cgcgaacgca
     8341 agccacgtcc gaccacgcca cgccgcaaag aaggcgctga acgtaaacct cgtgcgcaaa
     8401 agccggtaga gaaagcgcca aaaacagtaa aagcacctcg cgaagaacag cacaccccgg
     8461 tttctgacat ttcagctctg actgtcggac aagctctgaa ggtgaaagcg ggtcaaaacg
     8521 cgatggatgc caccgtatta gaaatcacca aagacggcgt ccgcgtccag ctgaattcgg
     8581 gtatgtcttt gattgtgcgc gcagaacacc tggtgttctg aaacggaggc cgggccaggc
     8641 atgaacatgt tttttaggct taccgcgtta gctggcctgc ttgcaatagc aggccagacc
     8701 ttcgctgtag aagatatcac gcgtgctgat caaattccgg tattaaagga agagacgcag
     8761 catgcgacgg taagtgagcg cgtaacgtcg cgcttcaccc gttctcatta tcgccagttc
     8821 gacctcgatc aggcattttc ggccaaaatc tttgaccgct acctgaatct gctcgattac
     8881 agccacaacg tgctgctggc aagcgatgtt gaacagttcg cgaaaaagaa aaccgagtta
     8941 ggcgatgaac tgcgttcagg caaactcgac gttttctacg atctctacaa tctggcgcaa
     9001 aagcgccgtt ttgagcgtta ccagtacgct ttgtcggtac tggaaaagcc gatggatttc
     9061 accggcaacg acacttataa ccttgaccgc agcaaagcgc cctggccgaa aaacgaggct
     9121 gagttgaacg cgctgtggga cagtaaagtc aaattcgacg agttaagcct gaagctggca
     9181 ggaaaaacgg ataaagaaat tcgtgaaacc ctgacacgcc gctacaaatt tgccattcgt
     9241 cgtctggcgc aaaccaacag cgaagatgtt ttctcgctgg caatgacggc gtttgcgcgt
     9301 gaaatcgacc cgcataccaa ctatctttcc ccgcgtaata ccgaacagtt caacactgaa
     9361 atgagtttgt cgctggaagg tattggcgca gtgctgcaaa tggatgatga ctacaccgtt
     9421 atcaattcga tggtggcagg tggtccggca gcgaagagta aagctatcag cgttggtgac
     9481 aaaattgtcg gtgttggtca aacaggcaag ccgatggttg acgtgattgg ctggcgtctt
     9541 gatgatgtgg ttgccttaat taaagggccg aagggcagta aagttcgtct ggaaatttta
     9601 cctgctggta aagggaccaa gacccgcact gtaacattga cccgtgaacg tattcgtctc
     9661 gaagaccgcg cggttaaaat gtcggtgaag accgtcggta aagagaaagt cggcgtgctg
     9721 gatattccgg gcttctatgt gggtttgaca gacgatgtca aagttcaact gcagaaactg
     9781 gaaaaacaga atgtcagcag tgtgatcatc gacctgcgta gcaatggcgg tggggcgttg
     9841 actgaagcgg tatcgctctc aggtctgttt attcctgcgg gtcccattgt tcaggtccgc
     9901 gataacaacg gcaaggttcg tgaagacagc gataccgacg ggcaggtgtt ctataaaggc
     9961 ccgctggtgg tactggttga ccgtttcagt gcttcggctt cagaaatctt tgccgcggca
    10021 atgcaggatt acggtcgtgc gctggttgtg ggtgaaccga cgtttggtaa aggcaccgtt
    10081 cagcaatacc gttcattgaa ccgtatttac gatcagatgt tacgtcctga atggccagcg
    10141 ctgggttctg tgcagtacac gatccagaaa ttctatcgcg ttaacggcgg cagtacgcaa
    10201 cgtaaaggcg taacgccaga catcatcatg ccgacgggta atgaagaaac ggaaacgggt
    10261 gagaaattcg aagataacgc gctgccgtgg gatagcattg atgccgcgac ttatgtgaaa
    10321 tcaggcgatt taacggcctt tgggccggag ctgctgaagg aacataatgc gcgtatcgcg
    10381 aaagatcctg agttccagaa catcatgaag gatatcgcgc gcttcaacgc tatgaaggac
    10441 aagcgcaata tcgtttctct gaactacgct gtgcgtgaga aagagaataa tgaagatgat
    10501 gcgacgcgtc tggcgcgttt gaacgaacgc tttaaacgcg aaggtaaacc ggagttgaag
    10561 aagctggatg atctaccgaa agattaccaa gagccggatc cttatctgga tgagacggtg
    10621 aatatcgcac tcgatctggc gaagcttgaa aaagccagac ccgcggaaca acccgctccc
    10681 gtcaagtaat atcaatcagg cacaagaaat tgtgcctgat tttttaacag cggcaagatg
    10741 ccgtaaatca gatgctacaa aatgtaaagt tgtgtctttc tggtgactta cgcactatcc
    10801 agacttgaaa atagtcgcgt aacccatacg atgtgggtat cgcatattgc gttttgttaa
    10861 actgaggtaa aaagaaaatt atgatgcgaa tcgcgctctt cctgctaacg aacctggccg
    10921 taatggtcgt tttcgggctg gtactgagcc tgacagggat acagtcgagc agcgttcagg
    10981 ggctgatgat catggccttg ctgttcggtt ttggtggttc cttcgtttcg cttctgatgt
    11041 ccaaatggat ggcattacga tctgttggcg gggaagtgat cgagcaaccg cgtaacgaaa
    11101 gggaacgttg gctggtcaat actgtagcaa cccaggctcg tcaggcaggg atcgctatgc
    11161 cgcaagtggc tatctaccat gcgccggaca tcaacgcttt tgcaaccggt gcgcgccgtg
    11221 atgcctctct ggttgctgtc agcaccggtt tgctgcagaa catgagcccg gatgaagccg
    11281 aggcggtaat tgctcacgaa atcagccaca tcgccaatgg tgatatggtc accatgacgc
    11341 tgattcaggg cgtggtgaac accttcgtta tctttatttc ccgtattctg gcgcagcttg
    11401 ccgcgggttt tatgggcgga aatcgtgatg aaggtgaaga gagcaacggc aacccgctga
    11461 tctactttgc ggttgcaacg gttctggaac tggtgtttgg tattctggcg agcattatca
    11521 ccatgtggtt ctcgcgtcat cgtgaattcc atgctgatgc cggttcggca aaactggttg
    11581 gtcgcgagaa aatgattgcc gcgctgcagc gcctgaaaac cagctatgaa ccgcaagaag
    11641 caaccagcat gatggctttc tgcattaatg gtaagtcgaa atcgctcagt gagttgttca
    11701 tgactcaccc gccgctggat aaacgaattg aagctctgcg tacgggtgaa tacctgaagt
    11761 aatatgaagt aaatactaaa aagtgcgtcc tgatcg
//
LOCUS       DADMJB010000132        11785 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.132, whole genome shotgun sequence.
ACCESSION   DADMJB010000132 DADMJB010000000
VERSION     DADMJB010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11785)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11785)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11785
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.132"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            29..1414
                     /locus_tag="JN078_003125"
     CDS             29..1414
                     /locus_tag="JN078_003125"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000398460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HAY9042246.1"
                     /translation="MEGGWNEGGKGISIADVMTAGAHGVPREVTEGVIDGLNYPNHEA
                     IDFYHRYKTDIQLFAEMGFKCFRTSIAWTRIFPQGDEQEPNEEGLQFYDDLFDECLKQ
                     GMEPVVTLSHFEMPYHLVTKYGGWRNRKLIDFFIRFASTVFTRYKEKVKYWMTFNEIN
                     NQVNFSESLCPFTNSGILYSPEEDINEREQIMYQAVHYELVASALAVQTGKSINPEFN
                     IGCMIAMYPIYPLTCVPNDMMMATKAMHRRYWFTDVHARGYYPQHMLNYFARKGFNLD
                     ITPEDNAILASGCVDFIGFSYYMSFTTQFSPDNPQLDYVEPRDLVSNPYIDTSEWGWQ
                     IDPAGLRYSLNWFWDHFQLPLFIVENGFGAVDQRQADGTVNDHYRIDYFASHIREMKK
                     AVVEDGVDLIGYTPWGCIDLVSAGTGEMKKRYGMIYVDKDNEGKGTLERIRKASFYWY
                     RDLIANNGENI"
     gene            complement(1471..1689)
                     /gene="marB"
                     /locus_tag="JN078_003126"
     CDS             complement(1471..1689)
                     /gene="marB"
                     /locus_tag="JN078_003126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiple antibiotic resistance protein MarB"
                     /protein_id="HAY9042247.1"
                     /translation="MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEQ
                     PPFDLNHMGTGSDKSDALGVPYYNQHAM"
     gene            complement(1721..2104)
                     /gene="marA"
                     /locus_tag="JN078_003127"
     CDS             complement(1721..2104)
                     /gene="marA"
                     /locus_tag="JN078_003127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707445.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MDR efflux pump AcrAB transcriptional activator
                     MarA"
                     /protein_id="HAY9042248.1"
                     /translation="MSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQR
                     MFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDV
                     PPHKYRMTNMQGESRFLHPLNHYNS"
     gene            complement(2124..2558)
                     /gene="marR"
                     /locus_tag="JN078_003128"
     CDS             complement(2124..2558)
                     /gene="marR"
                     /locus_tag="JN078_003128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310164.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiple antibiotic resistance transcriptional
                     regulator MarR"
                     /protein_id="HAY9042249.1"
                     /translation="MKSTSDLFNEIIPLGRLIHMVNQKKDRLLNEYLSPLDITAAQFK
                     VLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTT
                     SGAAICEQCHQLVGQDLHQELTKNLTADEVATLEHLLKKVLP"
     gene            2770..3435
                     /gene="marC"
                     /locus_tag="JN078_003129"
     CDS             2770..3435
                     /gene="marC"
                     /locus_tag="JN078_003129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAAT family transporter MarC"
                     /protein_id="HAY9042250.1"
                     /translation="MLDLFKAIGLGLVVLLPLANPLTTVALFLGLAGNMNSAERNRQS
                     LMASVYVFAIMMVAYYAGQLVMDTFGISIPGLRIAGGLIVAFIGFRMLFPQQKAIDSP
                     EAKSKSEELEDEPSANIAFVPLAMPSTAGPGTIAMIISSASTVRQSSTFADWVLMVAP
                     PLIFFLVAVILWGSLRSSGAIMRLVGKGGIEAISRLMGFLLVCMGVQFIINGILEIIK
                     TYH"
     gene            complement(3460..4650)
                     /gene="ydeA"
                     /locus_tag="JN078_003130"
     CDS             complement(3460..4650)
                     /gene="ydeA"
                     /locus_tag="JN078_003130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose MFS transporter"
                     /protein_id="HAY9042251.1"
                     /translation="MTTNTVSRKVAWLRVVTLAVAAFIFNTTEFVPVGLLSDIAQSFH
                     MQTAQVGIMLTIYAWVVALMSLPFMLMTSQVERRKLLICLFVVFIASHVLSFLSWSFT
                     VLVISRIGVAFAHAIFWSITASLAIRMAPAGKRAQALSLIATGTALAMVLGLPLGRIV
                     GQYFGWRMTFFAIGIGALITLLCLIKLLPLLPSEHSGSLKSLPLLFRRPALMSIYLLT
                     VVVVTAHYTAYSYIEPFVQNIAGFSANFATALLLLLGGAGIIGSVIFGKLGNQYASAL
                     VSTAIALLLVCLALLLPAANSEIHLGVLSIFWGIAMMIIGLGMQVKVLALAPDATDVA
                     MALFSGIFNIGIGAGALVGNQVSLHWSMSMIGYVGAVPAFAALIWSIIIFRRWPVTLE
                     EQTQ"
     gene            complement(4800..5914)
                     /gene="yneK"
                     /locus_tag="JN078_003131"
                     /pseudo
     CDS             complement(4800..5914)
                     /gene="yneK"
                     /locus_tag="JN078_003131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707449.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative protein YneK"
     gene            complement(5992..6873)
                     /locus_tag="JN078_003132"
     CDS             complement(5992..6873)
                     /locus_tag="JN078_003132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY9042252.1"
                     /translation="MDLTQLEMFNAVAEAGSITQAAAIVLRVPSNLTIRLRQLETELG
                     VDLFIRENQRLRLSPAGHNFLRYSQQILALVDEARSVVAGDEPQGLFSLGSLESTAAV
                     RIPATLAEFNHRYPKIQFSLSTGPSGTMLEGVLEGKLNAAFIDGPINHTAIDGIPVYR
                     EELMIVTPQGHAPVIRASQVNGSNIYAFRANCSYRRHFESWFHADGAAPGTIHEMESY
                     HGMLACVVAGAGIALIPRSMLESMPGHHQVEAWPLAEQWRWLTTWLVWRRGAKTRPLE
                     AFIQLLDVPDSAKQGYQ"
     gene            6974..8363
                     /gene="sad"
                     /locus_tag="JN078_003133"
                     /pseudo
     CDS             6974..8363
                     /gene="sad"
                     /locus_tag="JN078_003133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416042.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="succinate-semialdehyde dehydrogenase"
     gene            8427..9353
                     /gene="glsB"
                     /locus_tag="JN078_003134"
     CDS             8427..9353
                     /gene="glsB"
                     /locus_tag="JN078_003134"
                     /EC_number="3.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase B"
                     /protein_id="HAY9042253.1"
                     /translation="MAVAMDNAILENILRQVRPLIGQGKVADYIPALATVDGSRLGIA
                     ICTVDGQLFQAGDAQERFSIQSISKVLSLVVAMRHYSEEEIWQRVGKDPSGSPFNSLV
                     QLEMEQGIPRNPFINAGALVVCDMLQGRLSAPRQRMLEVVRGLSGVSDISYDTVVARS
                     EFEHSARNAAIAWLMKSFGNFHHDVTTVLQNYFHYCALKMSCVELARTFVFLANQGKA
                     IHIDEPVVTPMQARQINALMATSGMYQNAGEFAWRVGLPAKSGVGGGIVAIVPHEMAI
                     AVWSPELDDAGNSLAGIAVLEQLTKQLGRSVY"
     gene            9353..9712
                     /locus_tag="JN078_003135"
     CDS             9353..9712
                     /locus_tag="JN078_003135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4186 domain-containing protein"
                     /protein_id="HAY9042254.1"
                     /translation="MQSLDPLFARLSRSKFRSRFRLGMKERQYCLEKGAPVIEQHAAD
                     FVAKRLAPALPANDGKQTPMRGHPVFIAQHATATCCRGCLAKWHNIPQGVSLSEEQQR
                     YIVAVIYHWLVVQMNQP"
     gene            9851..11269
                     /locus_tag="JN078_003136"
     CDS             9851..11269
                     /locus_tag="JN078_003136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310156.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HAY9042255.1"
                     /translation="MHVHPISTFRLFQEGHLLRNSIAIFALTTLFYFIVAELRLVHEL
                     SLFWPLNGVMAGVFARYVWLNRLHYYAISYVVMLVYDAITTEWGLVSLVINFSNMMFI
                     VTVALLVVRDKRLGKNKYEPVSALRLFNYCLIAALLCAIVGAIGSVSIDSLDFWPLLA
                     DWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAF
                     PLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPEMFSARLGIA
                     TMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTV
                     MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP
                     VDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTC
                     LYRSKKDGRNRTSTMRYGEEVV"
     gene            11496..11735
                     /locus_tag="JN078_003137"
                     /pseudo
     CDS             11496..11735
                     /locus_tag="JN078_003137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310155.1"
                     /note="catalyzes the formation of D-tagaturonate from
                     D-altronate; incomplete; partial in the middle of a
                     contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tagaturonate reductase"
BASE COUNT         2988 a         2661 c         3031 g         3105 t
ORIGIN      
        1 atggggcggc gcggtagccg cgcatcagtt ggaaggtggc tggaatgaag gaggaaaagg
       61 catcagtatc gctgatgtga tgactgctgg cgctcacggg gtgccgcgtg aagtgacaga
      121 aggcgttatc gacgggctta attatcccaa tcatgaagca attgattttt atcatcgcta
      181 taaaacagat attcagttat ttgccgagat gggattcaaa tgctttcgaa cttccattgc
      241 ctggacacga atctttccgc aaggtgacga acaggagccg aatgaagagg gtttacaatt
      301 ttatgatgat ctgttcgatg aatgccttaa gcagggaatg gaacctgtgg tgacgctttc
      361 acattttgag atgccttatc atctggtgac aaaatatggt ggctggcgaa accgtaaact
      421 gatcgacttt tttatccgct tcgcatcaac ggtcttcacg cgctataaag aaaaagtaaa
      481 gtactggatg acgtttaacg aaatcaataa tcaggtgaat ttcagcgaaa gcctgtgtcc
      541 atttactaat tccggtatct tgtattcgcc agaggaagat atcaatgagc gcgaacaaat
      601 aatgtaccag gcggtacatt acgagttagt tgccagtgcc ctggcggtac agactggaaa
      661 atcgatcaat cctgaattta acattggctg tatgatcgcc atgtatccca tctatcctct
      721 gacgtgtgta cccaacgata tgatgatggc cacgaaagca atgcatcgtc gttactggtt
      781 tactgatgtt catgctcgtg gatattatcc gcaacatatg ctgaattact ttgccaggaa
      841 aggattcaac ctcgatatca caccagaaga taacgcgatt cttgccagtg gttgtgtcga
      901 ctttatcggc tttagctact acatgtcttt tacgacacaa ttttcgcccg ataacccgca
      961 actggattat gttgaaccac gagatttggt cagcaaccct tatatcgata catccgaatg
     1021 gggatggcaa attgatccgg cagggctacg ttattcactc aactggttct gggatcattt
     1081 ccagttgccg ctgtttattg tcgaaaatgg atttggtgcg gttgaccaga gacaagctga
     1141 cggcacggtg aacgatcact atcgcattga ttactttgct tcccatattc gggaaatgaa
     1201 aaaagccgta gttgaagatg gtgttgactt aattggctac accccgtggg gctgcattga
     1261 cctggtttct gccggaacag gggaaatgaa aaagcgctac ggaatgattt atgtcgataa
     1321 agacaacgaa gggaagggaa cgctggaacg gatacgtaaa gcgtcgtttt actggtatcg
     1381 ggatctcatc gccaacaatg gcgaaaatat ttgagacttg aggaagatat tacggagatg
     1441 tcaggctctg tgatcagagc ctgacaataa ctacatagcg tgttgattat aatagggcac
     1501 gccgagcgca tccgacttat cactgccagt acccatgtga tttaaatcaa acggtggttg
     1561 ttcctgcgat gggggaacaa ccacgacatt ggcacaagaa gtaacaactg gctgcgtggt
     1621 ttgttccgca acgccctgcg cggaaaagag aataagcgca gctgctattg cggatgaaag
     1681 tggtttcatg attgcctcag tgacgttgtc acgttatcaa ctagctattg taatgattta
     1741 atggatgtaa aaagcgcgat tcgccctgca tattggtcat ccggtattta tgtggcggaa
     1801 catcaaagta atttttgaag gttcgggtca gagtttgttg cgactcgaag ccatatcgtt
     1861 ctgccagata gagtatcggc tcgttacttt ccttcagctt ttgcgcgatt tccgtcatct
     1921 tacggctgcg gatgtattgg cctaatgaat gaccggtttc ttttttaaac atccgttgca
     1981 ggtgccattt agagtaacct gaacgctctg acactttctc cagtgacagt ggcgattcca
     2041 ggttgtcctc gatccagtcc aaaatgctat gaatggtaat agcgtcagta ttgcgtctgg
     2101 acatcgtcat acctcttttt tgtttacggc aggactttct taagcaaatg ctcaagtgtt
     2161 gccacttcgt ccgccgtcag gttttttgtt aattcttgat gcaggtcctg gccaactaat
     2221 tgatggcatt gttcgcatat tgccgcgccg ctggtggtaa gttttaccag tacgccgcgc
     2281 ttatcattcg ggttcggcaa cctttcaacc cagcctttac agaccaggcg atccagcata
     2341 cgggtcagtg ctccaaggtc gacagacaac acttttttca gttcaaccgg agtaatacac
     2401 gccgcgcagc ggatagagca gagcacctta aactgtgccg cggtaatatc cagcggagac
     2461 agatactcgt taagcagacg atctttcttc tgattaacca tatggattaa gcgacccaat
     2521 ggaataattt cattgaacag atcgctggta cttttcacat tagttgccct ggcaagtaat
     2581 tagttgcagg gggtaatatt gcccaggcaa gtataagtca aataaatgaa ttgaccgatg
     2641 ccacgttttg ctaaatcggt tcaagttttg gtcaatgcga tgcaaggtta gctaaagagt
     2701 gacactttat ccttgtttac cccttatact tttcgctgat aacccagata cactggataa
     2761 caaccaccaa tgttagattt gtttaaagca attggcctgg ggctggtggt gttactgccg
     2821 ttagctaacc cattaacaac tgtcgcgtta tttcttggcc tggcaggcaa catgaacagt
     2881 gccgaacgta atcgtcagtc gttgatggcc tcggtgtacg tatttgccat catgatggtg
     2941 gcgtattacg ccgggcaact ggtgatggat acatttggca tttcgattcc cggtctgcga
     3001 attgcaggcg gcttaatcgt cgcgtttatc ggttttcgga tgctctttcc gcaacagaaa
     3061 gcgattgatt caccggaggc gaaaagcaag tcggaagagc tggaagatga acccagtgcc
     3121 aatattgcct ttgtgccgct agcaatgcca agtaccgctg gtccgggaac catagcgatg
     3181 attattagct cggcgtccac agtgcgtcag agttcaacct tcgctgattg ggtactgatg
     3241 gttgcgccgc cgctgatctt tttcctggtg gcggttattt tgtggggaag cctacgcagc
     3301 tccggcgcaa ttatgcggct ggtgggcaag ggtggcattg aagcgatctc ccgtctgatg
     3361 ggattcctgc tggtatgtat gggtgtgcag tttattatta acggcatcct ggaaatcatt
     3421 aaaacgtacc attaaaaaag gcccgaatgg gcctttcaac tattgcgtct gttcttcgag
     3481 tgtcactggc cagcggcgaa atataatgat tgaccatatt aacgcggcaa aagcaggcac
     3541 cgcgcccaca taaccaatca tcgacattga ccagtgcaaa ctcacctgat tacctaccaa
     3601 cgcacccgcc ccgattccaa tattaaatat gccggagaat agcgccatcg cgacgtcggt
     3661 agcatctggt gccagcgcca gcactttaac ctgcatacca agcccgatga tcatcatcgc
     3721 gatcccccag aaaatactca gcaccccgag gtgtatttca ctgttcgccg caggtagcag
     3781 cagtgccaga cacaccagca acagcgcaat cgccgtactc accaacgcag acgcatactg
     3841 attacccagt ttaccgaaaa tcacgctgcc aataatgccc gcaccaccga gtaataacag
     3901 taatgccgtg gcaaagttgg cgctgaatcc cgcaatgttt tgcacaaaag gctcgatata
     3961 gctgtatgcc gtgtaatggg cggtgacaac caccacagtt aacaaataaa tgctcatcaa
     4021 tgccgggcgg cggaacaata gcgggaggct tttcaatgaa ccggaatgct cactgggcag
     4081 taagggaagt aacttaatca ggcacaaaag ggtgataagc gccccaatac caatcgcgaa
     4141 gaaggtcatt cgccaaccga aatactgccc cacaatgcgc ccgagaggta aacctaagac
     4201 catcgccagt gctgtaccgg tggcaattaa actcaaggcc tgtgcccgct tcccggccgg
     4261 agccatacgg atcgccagag acgccgtaat cgaccagaaa atcgcatgtg caaaagccac
     4321 accaatgcga ctgatcacca gaacggtaaa gctccacgat aaaaacgaca gtacgtggct
     4381 ggcaataaac accacaaaca ggcagatcag taatttgcgc cgttcaacct gactggtcat
     4441 taacataaaa ggcaatgaca ttagcgctac tacccatgcg taaatggtca acatgatgcc
     4501 gacctgagcg gtttgcatgt gaaaactttg cgcaatgtca gagagcaggc caacagggac
     4561 aaattcggtg gtgttgaaga tgaaggcggc gactgccagc gtaacgaccc gtagccacgc
     4621 cactttgcgg gaaacagtgt ttgttgtcat aacagattat cgggtgagtt gcgaaaaagt
     4681 gatgaaatga tcttaaaacg gttaatgatg tgaatacaat gcatttgtga tctggatcgc
     4741 gttttccgtt tctctgacgc tgattctgtt ccgcgtcaga gagtcggtaa catcacggtt
     4801 taatgacgtt cagggaggtc tggcgttttg gcggttgcgg gtataggtgg tctgacaggg
     4861 gagcgaggcc tgtttttcac caggtcttcg tgagtaactt ttggcggcgt ttcatttttt
     4921 acaaacagtt tgagggtcct gcgcgccata tgcttgataa ttttatcatc acttaatgat
     4981 gctggcatca acacgtcatt cagatcactt tcattgggat tcataaattg gtgatagtgc
     5041 aataacatat tggcgaaaaa taaaaaaaag tcctgaaaat gaggagattc ttgttctgct
     5101 aaaagggata aaaagcagat gcagacttcg ggtagtacat gtttgttaga acctaatgaa
     5161 tccatcaggc tttgcaataa atcctctttt aattcgccgt ctgttatgtc gagaatggcg
     5221 gtgatcaagt taggatcttt attgacgaac catctgtgaa cctcagagtt actccataat
     5281 cgggggagta tgacaaaatt accgcgagag ataaaattca ggacaagcaa atcaaactgg
     5341 cgtaagtaat ctgcagcggt atggtgatcc ggaggcaggg gttcaatatg tggtgtatgc
     5401 gcttttttga tggggacgcc aaggtggatc attggaaatt gttcaataaa atcattcgga
     5461 aacagaaaga gcacacgctc gacgccggtg tgaaatacgc gccccatagt gacaggcttt
     5521 gggttgggag cgcaaaaata ttaatttctc catcatggcg aaaattatct aaataaatag
     5581 ggtttaaatt tattactacc tgaaattcaa tattttcttt gtgtcttcca ttcttgacgg
     5641 gataagtgag tttaaactga accttttcat tgtatagtgt gtcgttaccc cgaaaagaag
     5701 tcctctgaat atatgataag ttatcaaggt tgttaaatat cttttttgtg gctgagttgg
     5761 tgtttaaaga cgtgcgccac tcttcatcac atattatggt actgagtgca tcaataaaat
     5821 tctttaaaac ttcttttacc tgaggtgcaa tattacgtac gggaaaatca tcaggaagaa
     5881 atatgtaatt actgatgctt actggcgtaa ccatatttgc cccatatagt cataagtcat
     5941 cggaacatca ctatataggg catttgagct gcaagaacta tcaaaaatag ctcattggta
     6001 accctgtttt gccgagtcag gcacatccag tagttgaata aatgcctcaa gcggacgcgt
     6061 tttcgcacca cgacgccaga ccagccaggt tgttaaccaa cgccattgct cagctaacgg
     6121 ccacgcttca acctggtgat gccccggcat actttccagc atagagcgtg gaataagcgc
     6181 aatgcctgct cctgcgacca cacaggccaa catcccgtga tacgactcca tctcgtgaat
     6241 agttcccgga gcggcaccgt cagcatgaaa ccagctctcg aagtggcgac gatacgaaca
     6301 attggcgcgg aaggcataaa tgttactgcc gttaacctga ctggcgcgga ttactggcgc
     6361 atgaccttgt ggcgtgacga tcatcagctc ctcgcggtat accggtatcc cgtcaatggc
     6421 agtatggtta atgggcccat caataaatgc cgcattcagt tttccctcca gcactccttc
     6481 cagcatagtg ccggaagggc cggtggaaag tgaaaactga attttgggat aacgatggtt
     6541 gaattccgcc agcgtggccg gaatgcgcac tgctgcggtg ctttccagcg aaccaagaga
     6601 aaataaacct tgcggctcat cgccagcgac aacgctccgc gcttcatcca ctaacgcgag
     6661 aatttgttgg ctatagcgta aaaagttatg cccggcagga gagagacgta aacgctgatt
     6721 ctcgcgaata aacagatcta cccccagttc tgtttccagc tggcgtagac ggatagtgag
     6781 attcgacggc acgcgaagca ctattgctgc tgcctgggtt atgctgccag cttcggcaac
     6841 cgcgttgaac atctccagtt gggtcagatc cataatattc tcgattcgtg aataagtggc
     6901 ttaatattat tcattttaaa gcaagagtaa atctgcgtat cttcatacca tgactcataa
     6961 aggagatacc ccgatgacca ttactccggc aactcatgca atttcgataa atcctgccac
     7021 gggtgaacaa ctttctgtgc tgccgtgggc tggcgctaac gatatcgaaa acgcacttca
     7081 gctggcggca gcaggctttc gcgactggcg cgagacaaat atagattatc gtgctgaaaa
     7141 actgcgtggt atcggtaagg ctctgcgcgc ccgtagcgaa gaaatggcgc aaatgatcac
     7201 ccgtgaaatg ggcaaaccaa tcaatcaggc gcgcgctgaa gtggcgaaat cggcgaattt
     7261 gtgtgactgg tatgcagaac atggtccggc aatgctgaag gcggaaccta cgctggtgga
     7321 aaatcagcag gcagttattg agtatcgacc gttggggatg attctggcga ttatgccgtg
     7381 gaactttccg ttatggcagg tgatgcgtgg cgcggttccc atcattcttg caggtaacgg
     7441 ctacttactt aaacatgcgc cgaatgtgat gggctgtgct cagctcattg cccaggtgtt
     7501 taaagatgcg ggaatcccgc aaggcgtata tggctggctg aatgccgaca acgacggtgt
     7561 cagtcaaatg attaaagatt cgcgcattgc tgctgtcacg gtgaccggaa gtgttcgtgc
     7621 gggagcggct attggcgcac aggctggagc ggcactgaaa aaatgcgtac tggaactggg
     7681 cggttcggat ccatttattg tgcttaacga tgccgatctg gaactggcgg ttaaagcggc
     7741 ggtagccgga cgttatcaga ataccggaca ggtttgtgca gcggcaaaac gctttattat
     7801 cgaagaggga attgcttctg catttaccga acgttttgtg gcagctgcgg cagccattga
     7861 aaatgggcga tccccgtgat gaagagaacg ctctcggacc aatggctcgt tttgatttac
     7921 gtgatgagct gcatcatcag gtggagaaaa ccctggcgca gggtgcgcgt ttgttactgg
     7981 gcggggaaaa gatggctggg gcaggtaact actatccgcc aacggttctg gcgaatgtta
     8041 ccccagaaat gaccgcgttt cgggaagaaa tgtttggccc tgttgcggca atcaccgttg
     8101 cgaaagatgc agaacatgcg ctggaactgg ctaatgatag tgagttcggc ctttcagcga
     8161 ccatttttac caccgacgaa acacaggcca gacagatggc ggcacgtctg gaatgcggtg
     8221 gggtgtttat caatggttat tgtgccagcg acgcgcgagt ggcctttggt ggcgtgaaaa
     8281 agagtggctt tggtcgtgag ctttcccatt tcggcttaca cgaattctgt aatatccaga
     8341 cggtgtggaa agaccggatc tgacgcgaca tattcagctc tgatatactc gcaggtcttt
     8401 tcagacctgc ggtccaggag tagaaagtgg cagtcgccat ggataatgca attttagaaa
     8461 acatcttgcg gcaagtgcgg ccgctcattg gtcagggtaa agtcgcggat tatattccgg
     8521 cgctggctac agtagacggt tcccgattgg gcattgctat ctgtaccgtt gacggacagc
     8581 tttttcaggc cggagacgcg caagaacgtt tttccattca gtctatttcc aaagtgctga
     8641 gtctcgttgt cgccatgcgt cattactccg aagaggaaat ctggcaacgc gtcggcaaag
     8701 atccgtctgg atcaccgttc aattctttag tgcaactgga aatggagcag ggtattccgc
     8761 gtaatccgtt tattaatgct ggtgcgctgg tggtctgcga tatgttgcaa gggcgattaa
     8821 gcgcaccacg gcaacgtatg ctggaagtcg tgcgcggctt aagcggtgtg tctgatattt
     8881 catacgatac ggtggtagcg cgttccgaat ttgaacattc cgcgcgaaat gcggctatcg
     8941 cctggctgat gaagtcgttt ggcaatttcc atcatgacgt gacaaccgtt ctgcaaaact
     9001 actttcatta ctgcgctctg aaaatgagct gtgtagagct ggcccggacg tttgtctttc
     9061 tggctaatca ggggaaagct attcatattg atgaacctgt ggtgacgcca atgcaggcgc
     9121 ggcaaattaa cgcgctgatg gcgaccagtg gtatgtacca gaacgcgggg gagtttgcct
     9181 ggcgggtggg gctaccggcg aaatctggcg ttggtggcgg tattgtggcg attgttccgc
     9241 atgaaatggc catcgctgtc tggagtccgg aactggatga tgcaggtaac tcgcttgcgg
     9301 gtatcgccgt ccttgaacaa ttgacgaaac agttagggcg ttcggtttat taatgcagtc
     9361 tctcgatcca ctcttcgcgc gtttatcccg ttcaaaattt cgctctcgct ttcgtctggg
     9421 catgaaagag cgtcagtatt gcctggagaa aggcgcgcca gtcatcgaac aacatgcggc
     9481 ggattttgtc gctaaacgtc ttgctccggc attaccggct aatgacggta agcaaacacc
     9541 catgcgcggg catccggtgt ttatcgctca gcacgccacc gcgacctgct gtcgcggttg
     9601 tctggctaag tggcataaca ttccgcaggg tgtttcgtta agcgaagaac aacaacgtta
     9661 tatcgtggcg gtaatctatc actggctggt tgtacagatg aatcagccat gagaattgcg
     9721 gaaaacgata aaatagcatt cccagggtac ctttatttgc cgccgctgtt agcgaacatg
     9781 ctatccttta tgagaattta cttattacgt tgagataatt gccacccgca attgtatgga
     9841 cagataatta atgcatgtac accccatttc aactttccgt ttgttccagg aaggtcatct
     9901 gctacgtaat agcatcgcta tttttgcgct aaccacgctg ttctatttta ttgttgcaga
     9961 gttacggctg gttcacgaac tttctctttt ctggccgctg aatggcgtaa tggcgggggt
    10021 gtttgcccgc tatgtctggc ttaatcgact gcattactat gcgatcagtt atgtggtgat
    10081 gctggtttat gatgccataa ccaccgaatg gggactggtt tcactggtta tcaatttctc
    10141 caatatgatg tttattgtta ccgtcgcctt actggtcgtg cgggataagc gtctggggaa
    10201 aaataagtat gagccagtaa gtgccttacg gctatttaat tactgtctga ttgccgcatt
    10261 attatgcgct attgtcgggg cgattggttc ggtcagtatt gatagtctgg atttctggcc
    10321 tttgcttgcg gactggttca gtgagcaatt ctcaacgggc gtgttgatcg tgccttgtat
    10381 gctgacgttg gctattcctg gagtgctgcc gcgctttaaa gcagaacaga tgatgcccgc
    10441 catcgcgctt attgtgtcgg ttattgcctc ggtagtcatt ggcggagcgg ggagtctggc
    10501 gttcccgctg cctgcattaa tctggtgtgc agtgcgctat acgccgcagg taacatgtct
    10561 gttgaccttt gtcaccggtg cggtggaaat cgtactggtg gcaaattcgg tgattgatat
    10621 ctcggtcggt tcgccgttct ccattccgga aatgttctcc gcacgtctcg gtattgccac
    10681 gatggcgata tgcccaatta tggtttcttt tagcgtggca gcgatcaatt cgctaatgaa
    10741 gcaagttgcg ctgcgagccg actttgattt tctgactcag gtttactcac ggtccggtct
    10801 ttatgaggcg ctgaaaagtc catcgctgaa acagacacaa catctgacgg tcatgctgct
    10861 tgatatcgac tatttcaaaa gcattaacga taactatgga catgaatgtg gcgataaagt
    10921 gttaagcgtg tttgcccggc atattcagaa gattgtcggt gataaggggc tggtggcgcg
    10981 catgggcggc gaagaatttg ctgttgcagt gccgtcggtg aatcctgtcg atggtctgct
    11041 aatggcggaa aaaatccgta aaggcgttga actgcaacca ttcacctggc aacaaaaaac
    11101 gctttatctc acggtaagta ttggcgtcgg tagtggtcgc gcatcgtacc gaacgctgac
    11161 cgatgatttt aataaattga tggtcgaagc cgatacgtgt ctgtatcgct cgaagaaaga
    11221 tgggcgcaac cgtaccagca ctatgcgtta cggtgaggaa gttgtctgac atctttattc
    11281 attccgcgcg atttgaatgc aatgtgttct accactttat gatccaggaa aaggcgtatt
    11341 tcctcgatta aaccatgatc cgcgccacac ttttctcata aaactgctca ttaatcatca
    11401 ggagttgatc aaaacagggg ttcggcgtat taaattttgc taacctgtcg taccaattca
    11461 agcgggttgt atgactaatc agaagggaac ccattgtgaa aacactaaat cgtcgcgata
    11521 ttcccggtgc acagtatcca gaacgtatca ttcagtttgg tgaaggtaac ttcctgcgcg
    11581 cctttgttga ctggcaaatc gatctcctga atgagcacac cgatctgaat tctggcgtgg
    11641 tcgttgttcg tccgattgaa acttcattcc cgccgtcact gagcacgcag gatggtctgt
    11701 acaccaccat tatccgtggc ctgaatgaga aggggtgaag tggtcaacaa aaactggcca
    11761 ccgagttaga gtttttccag tatcg
//
LOCUS       DADMJB010000133        11774 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.133, whole genome shotgun sequence.
ACCESSION   DADMJB010000133 DADMJB010000000
VERSION     DADMJB010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11774)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11774)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11774
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.133"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(10..660)
                     /gene="hxpA"
                     /locus_tag="JN078_003138"
     CDS             complement(10..660)
                     /gene="hxpA"
                     /locus_tag="JN078_003138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HpxA"
                     /protein_id="HAY9042256.1"
                     /translation="MRCKGFLFDLDGTLVDSLPAVERAWSNWARRHGLAPEEVLAFIH
                     GKQAITSLRHFMAGKSEADIAAEFTCLEHIEATETEGITALPGAIALLNHLNKAGIPW
                     AIVTSGSMPVARARHKIAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVV
                     AEDAPAGVLSGLAAGCHVIAVNAPADTPRLNEVDLVLHSLEQITVTKQLNGDVIIQ"
     gene            complement(671..1165)
                     /locus_tag="JN078_003139"
     CDS             complement(671..1165)
                     /locus_tag="JN078_003139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007371080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfbU family protein"
                     /protein_id="HAY9042257.1"
                     /translation="MEMTNAQRLILSNQYKMMTMLDPANAERYRRLQTIIERGYGLQM
                     RELDREFGELKEETCRTIIDIMEMYHALHVSWSNLQDQQSIDERRVTFLGFDAATEAR
                     YLGYVRFMVNVEGRYTHFDAGTHGFNAQTPMWEKYQRMLNVWHACLRQYHLSANEINQ
                     IINA"
     gene            complement(1249..1704)
                     /locus_tag="JN078_003140"
     CDS             complement(1249..1704)
                     /locus_tag="JN078_003140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF412 domain-containing protein"
                     /protein_id="HAY9042258.1"
                     /translation="MSTPDNRSVNFFSLFRRGQHYSKTWPLEKRLAPVFVENRVIKMT
                     RYAIRFMPPIAVFTLCWQIALGGQLGPAVATALFALSLPMQGLWWLGKRSVTPLPPAI
                     LNWFYEVRGKLQESGQVLAPVEGKPDYQALADTLKRAFKQLDKTFLDDL"
     gene            2042..3244
                     /gene="ackA"
                     /locus_tag="JN078_003141"
     CDS             2042..3244
                     /gene="ackA"
                     /locus_tag="JN078_003141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HAY9042259.1"
                     /translation="MSSKLVLVLNCGSSSLKFAIIDAVNGEEYLSGLAECFHLPEARI
                     KWKMDGNKQEAALGAGAAHSEALNFIVNTILAQKPELSAQLTAIGHRIVHGGEKYTSS
                     VVIDESVIQGIKDAASFAPLHNPAHLIGIEEALKSFPQLKDKNVAVFDTAFHQTMPEE
                     SYLYALPYNLYKEHGIRRYGAHGTSHFYVTQEAAKMLNKPVEELNIITCHLGNGGSVS
                     AIRNGKCVDTSMGLTPLEGLVMGTRSGDIDPAIIFHLHDTLGMSVDAINKLLTKESGL
                     LGLTEVTSDCRYVEDNYATKEDAKRAMDVYCHRLAKYIGAYTALMDGRLDAVVFTGGI
                     GENAAMVRELSLGKLGVLGFEVDHERNLAARFGKSGFINKEGTRPAVVIPTNEELVIA
                     QDASRLTA"
     gene            3319..5463
                     /gene="pta"
                     /locus_tag="JN078_003142"
     CDS             3319..5463
                     /gene="pta"
                     /locus_tag="JN078_003142"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HAY9042260.1"
                     /translation="MSRIIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPR
                     TGGDAPDQTTTIVRANSSTTTAAEPLKMSYVEGLLSSNQKDVLMEEIVANYHANTKDA
                     EVVLVEGLVPTRKHQFAQSLNYEIAKTLNAEIVFVMSQGTDTPEQLKERIELTRNSFG
                     GAKNTNITGVIVNKLNAPVDEQGRTRPDLSEIFDDSSKAKVNNVDPAKLQESSPLPVL
                     GAVPWSFDLIATRAIDMARHLNATIINEGDINTRRVKSVTFCARSIPHMLEHFRAGSL
                     LVTSADRPDVLVAACLAAMNGVEIGALLLTGGYEMDARISKLCERAFATGLPVFMVNT
                     NTWQTSLSLQSFNQEVPVDDHERIEKVQEYVANYINADWIESLTATSERSRRLSPPAF
                     RYQLTELARKAGKRIVLPEGDEPRTVKAAAICAERGIATCVLLGNPAEINRVAASQGV
                     ELGAGIEIVDPEVVRESYVGRLVELRKNKGMTETVAREQLEDNVVLGTLMLEQDEVDG
                     LVSGAVHTTANTIRPPLQLIKTAPGSSLVSSVFFMLLPEQVYVYGDCAINPDPTAEQL
                     AEIAIQSADSAAAFGIEPRVAMLSYSTGTSGAGSDVEKVREATRLAQEKRPDLMIDGP
                     LQYDAAVMADVAKSKAPNSPVAGRATVFIFPDLNTGNTTYKAVQRSADLISIGPMLQG
                     MRKPVNDLSRGALVDDIVYTIALTAIQSAQQQ"
     gene            5653..7173
                     /gene="yfcC"
                     /locus_tag="JN078_003143"
     CDS             5653..7173
                     /gene="yfcC"
                     /locus_tag="JN078_003143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416801.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative basic amino acid antiporter YfcC"
                     /protein_id="HAY9042261.1"
                     /translation="MSAITESKPTRRWAMPDTLVIIFFVAILTSLATWVVPVGMFDSQ
                     EVQYQVDGQTKTRKVVDPHSFRILTNEAGEPEYHRVQLFTTGDERPGLMNFPFEGLTS
                     GSKYGTAVGIIMFMLVIGGAFGIVMRTGTIDNGILALIRHTRGNEILFIPALFILFSL
                     GGAVFGMGEEAVAFAIIIAPLMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQ
                     GIAGVPVLSGSGLRIVVWVIATMIGLIFTMVYASRVKKNPLLSRVHESDRFFREKQAD
                     VEQRPFTFGDWLVLIVLTAVMVWVIWGVIVNAWFIPEIASQFFTMGLVIGIIGVVFRL
                     NGMTVNTMASSFTEGARMMIAPALLVGFAKGILLLVGNGEAGDASVLNTILNSIANAI
                     SGLDNAVAAWFMLLFQAVFNFFVTSGSGQAALTMPLLAPLGDLVGVNRQITVLAFQFG
                     DGFSHIIYPTSASLMATLGVCRVDFRNWLKVGATLLGLLFIMSSVVVIGAQLMGYH"
     gene            complement(7206..7748)
                     /gene="yfcD"
                     /locus_tag="JN078_003144"
     CDS             complement(7206..7748)
                     /gene="yfcD"
                     /locus_tag="JN078_003144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase YfcD"
                     /protein_id="HAY9042262.1"
                     /translation="MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVV
                     HDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAE
                     HGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKA
                     LALWMKRNAKNEAVETETAE"
     gene            complement(7806..8357)
                     /gene="yfcE"
                     /locus_tag="JN078_003145"
     CDS             complement(7806..8357)
                     /gene="yfcE"
                     /locus_tag="JN078_003145"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311211.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase"
                     /protein_id="HAY9042263.1"
                     /translation="MKLMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRN
                     ALPEGYAPAKVAERLNEVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFL
                     THGHLFGPENLPALNQNDVLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGNPASYGML
                     DNDVLSVIALNDQSIIAQVAINP"
     gene            complement(8413..9045)
                     /gene="yfcF"
                     /locus_tag="JN078_003146"
     CDS             complement(8413..9045)
                     /gene="yfcF"
                     /locus_tag="JN078_003146"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione transferase"
                     /protein_id="HAY9042264.1"
                     /translation="MSKPAITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGE
                     HLQPTWQGYGQTRRVPLLQIDDFELSESSAIAEYLEDRFAPPTWERIYPLDLENRARA
                     RQIQAWLRSDLMPIREERPTDVVFAGAKKAPLTAEGKASVAMAEHLLALGQPNLFGEW
                     CIADTDLALMINRLVLHGDEVPERLVDYATFQWQRASVQRFIALSAKQSG"
     gene            9181..9828
                     /gene="yfcG"
                     /locus_tag="JN078_003147"
     CDS             9181..9828
                     /gene="yfcG"
                     /locus_tag="JN078_003147"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GSH-dependent disulfide bond oxidoreductase"
                     /protein_id="HAY9042265.1"
                     /translation="MIDLYFAPTPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFL
                     RISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLAEKTGLFLSHETRERAATLQWLF
                     WQVGELGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGENYS
                     IADIACWPWVNAWTRQRIDLTMYPAVKNWHERIRSRPATGQALLKAQLGDERSDS"
     gene            9885..10247
                     /gene="folX"
                     /locus_tag="JN078_003148"
     CDS             9885..10247
                     /gene="folX"
                     /locus_tag="JN078_003148"
                     /EC_number="5.1.99.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate 2'-epimerase"
                     /protein_id="HAY9042266.1"
                     /translation="MAQPAAIIRIKNLRLRTFIGIKEEEINNRQDIVINVTIHYPADK
                     ARTSEDINDALNYRTVTKNIIQHVENNRFSLLEKLTQDVLDIAREHHWVTYAEVEIDK
                     LHALRYADSVSMTLSWQR"
     gene            10268..11161
                     /locus_tag="JN078_003149"
     CDS             10268..11161
                     /locus_tag="JN078_003149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family protein"
                     /protein_id="HAY9042267.1"
                     /translation="MNIVITGGTGLIGRHLIPRLLELGHQITVVTRNPQKASSVLGPR
                     VTLWQGLADQSNLNGVDAVINLAGEPIADKRWTHEQKERLCQSRWNITQKLVDLINAS
                     DTPPSVLISGSATGYYGDLGEVVVTEEEPPHNEFTHKLCARWEEIACRAQSDKTRVCL
                     LRTGVVLAPDGGILGKMLPPFRLGLGGPIDSGRQYLAWIHIDDMVNGILWLLDNELRG
                     PFNMVSPYPVRNEQFAHALGHALHRPAILRVPATAIRLLMGESSVLVLGGQRALPKRL
                     EEAGFAFRWYDLEEALADVVR"
     gene            complement(11209..>11774)
                     /locus_tag="JN078_003150"
     CDS             complement(11209..>11774)
                     /locus_tag="JN078_003150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /protein_id="HAY9042268.1"
                     /translation="GYKELPLVIPMLFYHGCRSPYPYSLCWLDEFAEPAIARKIYSSA
                     FPLVDITVVPDDEIMQHRKMALLELIQKHIRQRDLLGLVDQIVSLLVTGNTNDRQLKA
                     LFNYVLQTGDAQRFRAFIGEIAERAPQEKEKLMTIADRLREEGAMQGKHEEALRIAQE
                     MLDRGLDRELVMMVTRLSPDDLIAQSH"
BASE COUNT         2818 a         3121 c         2944 g         2891 t
ORIGIN      
        1 tcaggtgttt cactgaataa taacatcgcc atttagctgt ttggtcacag taatttgctc
       61 cagactgtgg aggaccaaat cgacctcatt caggcgcggg gtatctgccg gagcgttaac
      121 cgcaatgaca tggcaacccg ccgccaggcc agaaagcacg ccagcgggag catcttccgc
      181 caccacacac tcctgcggcg caagccccag cagctgcgca cctaacagat acgcatcagg
      241 ttctggtttt ccgcgcttca ctcgctcagc ggttacaaac acctctggtg cgggaagccc
      301 agctatttta tggcgcgctc gcgctaccgg catggagcca gaagtcacaa tggcccacgg
      361 aatacctgct ttattcaaat gattgagtaa ggcgattgcc cccggaagcg cggtaatacc
      421 ttcggtttcc gtggcctcga tgtgctccag acacgtaaac tcggcggcaa tatcagcctc
      481 ggatttgccc gccataaaat ggcgcaaaga ggtgatcgcc tgtttaccgt gaatgaaagc
      541 cagcacctct tccggcgcta acccatgacg tctggcccag ttgctccacg cccgttctac
      601 cgcaggcagg gaatccacca gcgttccatc aagatcaaac agaaaacctt tgcaccgcac
      661 gcgggcctcc tcaggcgttg ataatttgat taatttcgtt ggcgctcaaa tggtactgac
      721 gcaggcaggc atgccacaca ttaagcatgc gctgatattt ttcccacatt ggcgtctggg
      781 cgttaaaacc atgagtccca gcgtcaaaat gggtatagcg cccttccaca ttaaccataa
      841 agcggacata accgaggtaa cgtgcttcag tggcggcgtc aaagccgagg aaggtgacac
      901 gacgttcatc gatggattgc tggtcctgca aattagacca ggaaacatgc aacgcatgat
      961 acatctccat aatgtcgatg atagtgcggc aggtttcttc tttcagctcg ccaaactcgc
     1021 gatccaattc acgcatctgt aatccgtaac cacgctcaat aattgtttgc aggcgacggt
     1081 aacgttcagc atttgccgga tcgagcatag tcatcatctt gtactgatta gacaaaataa
     1141 gacgttgcgc gttggtcatt tccattgttg actcctgtat cactctacta cggtgaaaaa
     1201 aaaagaaggc tgagtatgcc ttcttttata tgcgtaatca ggggtcaatt acaaatcatc
     1261 aaggaaagtt ttatccagtt gtttgaaggc gcgcttaagc gtgtcagcta atgcctggta
     1321 atcaggcttg ccttcaacgg gtgccaacac ctgtccagac tcctgcaatt taccgcgaac
     1381 ttcataaaac cagttgagga tagcaggggg taatggcgtt acagaacgct tgcccagcca
     1441 ccataatccc tgcatgggta aacttaaggc gaacagcgca gtggcaactg ccggcccaag
     1501 ctgaccgccc agggcaatct gccagcagag agtaaatacg gcgatcggcg gcataaaacg
     1561 gatcgcataa cgcgtcatct tgataacgcg attttcgaca aagaccgggg caaggcgttt
     1621 ttccagcggc cacgtctttg agtaatgctg tccccggcga aacaagctaa aaaaattaac
     1681 agaacgatta tccggcgttg acatgcttca cctcaacttc acatataaag attcaaaaat
     1741 ttgtgcaaat tcacaactca gcgggacaac attcaaaaca ttttgtcttc catacccact
     1801 atcaggtatc ctttagcagc ctgaaggcct aagtagtaca tattcattga gtcgtcaaat
     1861 tcatatacat tatgccattg gctgaaaatt acgcaaaatg gcatagactc aagatatttc
     1921 ttccatcatg caaaaaaaat ttgcagtgca tgatgttaat cataaatgtc ggtgtcatca
     1981 tgcgctacgc tctatggctc cctgacgttt ttttagccac gtatcaatta taggtacttc
     2041 catgtcgagt aagttagtac tggttctgaa ctgcggtagt tcttcactga aatttgccat
     2101 catcgatgca gtaaatggtg aagagtacct ttctggttta gccgaatgtt tccacctgcc
     2161 cgaagcacgt atcaaatgga aaatggacgg caataaacag gaagcggctt taggtgcagg
     2221 cgccgctcac agcgaagcgc tcaactttat cgttaatact attctggcac aaaaaccaga
     2281 actgtctgcg cagctgactg ctatcggtca ccgtatcgta cacggcggcg aaaagtatac
     2341 cagctccgta gtgatcgatg agtctgttat tcagggtatc aaagatgcag cttcttttgc
     2401 accgctacac aacccggctc acctgatcgg tatcgaagaa gctctgaaat ctttcccaca
     2461 gctgaaagac aaaaacgttg ctgtatttga caccgcgttc caccagacta tgccggaaga
     2521 gtcttacctc tacgccctgc cttacaacct gtacaaagag cacggcatcc gtcgttacgg
     2581 cgcgcacggc accagccact tctatgtaac ccaggaagcg gcaaaaatgc tgaacaaacc
     2641 ggtagaagaa ctgaacatca tcacctgcca cctgggcaac ggtggttccg tttctgctat
     2701 ccgcaacggt aaatgcgttg acacctctat gggcctgacc ccgctggaag gtctggtcat
     2761 gggtacccgt tctggtgata tcgatccggc gatcatcttc cacctgcacg acaccctggg
     2821 catgagcgtt gacgcaatca acaaactgct gaccaaagag tctggcctgc tgggtctgac
     2881 cgaagtgacc agcgactgcc gctatgttga agacaactac gcgacgaaag aagacgcgaa
     2941 gcgcgcaatg gacgtttact gccaccgcct ggcgaaatac atcggtgcct acactgcgct
     3001 gatggatggt cgtctggacg ctgttgtatt cactggtggt atcggtgaaa atgccgcgat
     3061 ggttcgtgaa ctgtctctgg gcaaactggg cgtgctgggc tttgaagttg atcatgaacg
     3121 caacctggct gcacgtttcg gcaaatctgg tttcatcaac aaagaaggta cccgtcctgc
     3181 ggtggttatc ccaaccaacg aagaactggt tatcgcgcaa gacgcgagcc gcctgactgc
     3241 ctgatttcac accgccagct cagctggcgg tgctgttttg taacccgcca aatcggcggt
     3301 aacgaaagag gataaaccgt gtcccgtatt attatgctga tccctaccgg aaccagcgtc
     3361 ggtctgacca gcgtcagcct tggcgtgatc cgtgcaatgg aacgcaaagg cgttcgtctg
     3421 agcgttttca aacctatcgc tcagccgcgt accggtggcg atgcgcccga tcagactacg
     3481 actatcgtgc gtgcgaactc ttccaccacg acggccgctg aaccgctgaa aatgagctac
     3541 gttgaaggtc tgctttccag caatcagaaa gatgtgctga tggaagagat cgtcgcaaac
     3601 taccacgcta acaccaaaga cgctgaagtc gttctggttg aaggtctggt cccgacacgt
     3661 aagcaccagt ttgcccagtc tctgaactac gaaatcgcta aaacgctgaa tgcggaaatc
     3721 gtcttcgtta tgtctcaggg cactgacacc ccggaacagc tgaaagagcg tatcgaactg
     3781 acccgcaaca gcttcggcgg tgccaaaaac accaacatca ccggcgttat cgttaacaaa
     3841 ctgaacgcac cggttgatga acagggtcgt actcgcccgg atctgtccga gattttcgac
     3901 gactcttcca aagctaaagt aaacaatgtt gatccggcga agctgcaaga atccagcccg
     3961 ctgccggttc tcggcgctgt gccgtggagc tttgacctga tcgcgactcg tgcgatcgat
     4021 atggctcgcc acctgaatgc gaccatcatc aacgaaggcg acatcaatac tcgccgcgtt
     4081 aaatccgtca ctttctgcgc acgcagcatt ccgcacatgc tggagcactt ccgtgccggt
     4141 tctctgctgg tgacttccgc agaccgtcct gacgtgctgg tcgccgcttg cctggcagcc
     4201 atgaacggcg tagaaatcgg tgccctgctg ctgactggcg gctacgaaat ggacgcgcgc
     4261 atttctaaac tgtgcgaacg tgctttcgct accggcctgc cggtatttat ggtgaacacc
     4321 aacacctggc agacctctct gagcctgcag agcttcaacc aggaagttcc ggttgacgat
     4381 cacgaacgta tcgagaaagt tcaggaatac gttgctaact acatcaacgc tgactggatc
     4441 gaatctctga ctgccacttc tgagcgcagc cgtcgtctgt ctccgcctgc gttccgttat
     4501 cagctgactg aacttgcgcg caaagcgggc aaacgtatcg tactgccgga aggtgacgaa
     4561 ccgcgtaccg ttaaagcagc cgctatctgt gctgaacgtg gtatcgcaac ttgcgtactg
     4621 ctgggtaatc cggcagagat caaccgtgtt gcagcgtctc agggtgtaga actgggtgca
     4681 gggattgaaa tcgttgatcc agaagtggtt cgcgaaagct atgttggtcg tctggtcgaa
     4741 ctgcgtaaga acaaaggcat gaccgaaacc gttgcccgcg aacagctgga agacaacgtg
     4801 gtgctcggta cgctgatgct ggaacaggat gaagttgatg gtctggtttc cggtgctgtt
     4861 cacactaccg caaacaccat ccgtccgccg ctgcagctga tcaaaactgc accgggcagc
     4921 tccctggtat cttccgtgtt cttcatgctg ctgccggaac aggtttacgt ttacggtgac
     4981 tgtgcgatca acccggatcc gaccgctgaa cagctggcag aaatcgcgat tcagtccgct
     5041 gattccgctg cggccttcgg tatcgaaccg cgcgttgcta tgctctccta ctccaccggt
     5101 acttctggtg caggtagcga cgtagaaaaa gttcgcgaag caactcgtct ggcgcaggaa
     5161 aaacgtcctg acctgatgat cgacggtccg ctgcagtacg acgctgcggt aatggctgac
     5221 gttgcgaaat ccaaagcgcc gaactctccg gttgcaggtc gcgctaccgt gtttatcttc
     5281 ccggatctga acaccggtaa caccacctac aaagcggtac agcgttctgc cgacctgatc
     5341 tccatcgggc cgatgctgca gggtatgcgc aagccggtta acgacctgtc ccgtggcgca
     5401 ctggttgacg atatcgtcta caccatcgcg ctgactgcga ttcagtctgc acagcagcag
     5461 taatctcgtc atcatccgca gctttgcgct gcggatatct gaaccggaaa taatcactat
     5521 ttccggtttt ttattctctt aatctgcatt aatcctttct gattatcttg cttaactgcg
     5581 ctgcatcaat gaattgcgcc atttcacttt gcatacttac cactttgttt tgtgcaaggg
     5641 aatatttgcg ctatgtccgc aatcactgaa tccaaaccaa caagaagatg ggcaatgccc
     5701 gatacgttgg tgattatctt ttttgttgct attttaacca gccttgccac ctgggtagtt
     5761 ccggtgggga tgtttgacag tcaggaagtg cagtatcagg ttgatggtca aacaaaaaca
     5821 cgcaaagtcg tagatccaca ctcatttcgc attctgacta acgaagcagg cgaacctgag
     5881 tatcaccgcg tacagctgtt cacgacgggc gatgaacgcc cgggcctgat gaacttcccg
     5941 tttgaaggat taacctcagg atcgaaatac gggacagctg ttggcatcat catgtttatg
     6001 ctggtgattg gcggcgcgtt tggcattgtg atgcgtacag gaaccattga taacggtatc
     6061 ctggcgctta ttcgccatac ccgcgggaat gaaattctct ttattcctgc gctgtttatt
     6121 ctgttttcac ttggcggcgc ggtatttggt atgggagaag aggccgtcgc ctttgccatt
     6181 atcatcgcac cgctaatggt ccggctgggc tatgacagta ttaccaccgt cctggtgacc
     6241 tatattgcca cgcaaatcgg ttttgccagt tcgtggatga acccgttttg tgtggtcgtt
     6301 gctcagggga ttgccggcgt tccggtgctt tctggctccg ggttgcgcat cgtggtgtgg
     6361 gttatcgcca ctatgattgg cctgatcttt accatggtgt acgcctcacg agtgaaaaag
     6421 aatcctcttc tgtcacgcgt gcatgagtcc gaccgcttct ttcgtgaaaa gcaggcggat
     6481 gttgaacaac gtccgtttac ctttggtgac tggctggtat tgattgtcct gaccgccgta
     6541 atggtctggg tgatttgggg cgtgatcgtt aatgcctggt ttattccaga aattgccagc
     6601 cagttcttca ccatgggtct ggtgattggc atcatcggcg ttgttttccg ccttaacggc
     6661 atgacggtta ataccatggc ttcatccttt accgaagggg cgcgaatgat gatcgcccct
     6721 gccctgctgg tgggtttcgc caaagggatt ttgctgctgg tcggtaatgg tgaagcgggt
     6781 gatgccagcg tgttaaatac catcctcaac agcattgcca atgccattag cggtctggac
     6841 aacgcggtcg cggcctggtt tatgttgctc ttccaggcgg tatttaattt cttcgtgacg
     6901 tccggttctg gtcaggcggc gttaaccatg ccgttactgg caccgcttgg cgatctggtc
     6961 ggtgttaacc gtcagattac cgtgctggca ttccagtttg gtgatggctt cagtcacatc
     7021 atttacccaa cctcagcttc gttaatggca actctcggtg tgtgcagggt ggacttccgt
     7081 aactggctga aggtgggcgc gaccctactt ggactgctgt ttattatgtc cagcgtcgta
     7141 gtgatcggcg ctcagttgat gggctaccac taaaaatgtt aagagccgca attgcggctc
     7201 ttttttcatt ctgccgtttc agtctctacg gcttcatttt tggcattgcg cttcatccac
     7261 aacgccagcg ctttcagcga gtctggagtg aactcatcgc agcgtgcggt gatttcttcc
     7321 ggcgtcagcc agcaaacttc actgacttca tcttcctgta gggcgaaggg accgtgagag
     7381 acgcagctga acaacgcgcc ccagacacgg caatttttat cttcgaaata gaactgcccg
     7441 tgctcggcaa aggggacacc ggcaatgccc aactcttctt ccgcttcgcg acgcgcggat
     7501 tccagcagtt gctcatcggc ctgaaccaca ccgcctgcgg tcgcatctaa catgccgggt
     7561 aaaaagtctt ttgtctcggt acgacgctgg accagaattt tgcccatgcc atcatgcacg
     7621 acgatgtaag ttgcacgatg acgcagacac tgtgcccgca tttgttcccg gctggcttgt
     7681 gcaatgactt cgttctcttc attgacaata tccacccatt cagtacttgc caaacgacgc
     7741 tgttccatta tcaggaaacc ttctttttct ggcgctctta cggcgcattt tgagttgtgg
     7801 gtaaattacg gattaatcgc gacctgcgca atgatacttt gatcattgag tgcgattaca
     7861 ctaagtacgt cattatccag catgccataa ctcgccggat taccgccttt cggaatactc
     7921 accgagccgg ggttgaagtg gaaaatctcc ccccgctgtt ctgccactgg cagatgggta
     7981 tgaccgtaca ccagcacatc gttctggttt aaagcaggta gattttccgg gccaaaaaga
     8041 tgaccatgcg tcaaaaacag acgttgtttt tccagtaata cctgttgcca cggcgcggtt
     8101 atcgggaaat gcagcagcat ttgatccact tcgctgtcgc agttgccgcg cacagcgata
     8161 accttatgtg ccacttcatt aagccgttca gcgactttgg ctggcgcgta accctccggt
     8221 aaagcattac gcgggccgtg attcaacacg tcgccaagga tcaccagcca ctgggcaccg
     8281 ctttgggcaa acaactccag aacacgttcc gtcgccggta acgacccatg aatgtccgat
     8341 gcaaacatca gtttcatcac tcactcctcg tcgaaaaaac gtaagctatg atactggatt
     8401 ctgtcgttgc tatcagccag attgcttcgc cgaaagtgca ataaaacgct ggacagacgc
     8461 tcgctgccac tggaatgtcg cataatccac caggcgttct ggcacctcat cgccatgtag
     8521 taccaggcgg ttaatcatta gcgccagatc agtatcagca atgcaccatt caccaaataa
     8581 attcggctga cccagtgcta acaaatgttc tgccatcgcg acactggctt ttccctcggc
     8641 cgttagtggc gcttttttcg cccccgcaaa gacaacatcc gtcggacgct cttcgcggat
     8701 gggcatcaga tcgctgcgca gccaggcctg aatctgtcgt gcacgcgcac gattttctaa
     8761 atcaagcgga taaatacgtt cccaggtcgg tggcgcaaat cgatcttcca gatactccgc
     8821 aatggcagaa gattcactca actcaaaatc atcgatttgt aataacggca cacggcgtgt
     8881 ctgaccgtaa ccttgccacg tcggctgcaa atgttcaccg ctgtcgaggt cgatggtctt
     8941 gatatgaaac gacaggcctt tttcctgcaa cgccacccaa gcggataaca cataagggga
     9001 gaaaaagtgg gcatctgacc aaagcgtgat agcgggttta ctcattatgt cctcggcaat
     9061 aaaggaggct ggctatcaaa ctatagagcc tttttgtcac tgtcacgtga cgaatactca
     9121 cgtaagtcgc cgcgctttct atacttgtgg tgttcagatg attaaacaac cggagctgca
     9181 atgatcgatc tctatttcgc cccgacaccc aatggtcaca aaattacgct gtttctcgaa
     9241 gaagcagagc ttgattatcg cttgattaag gtagacctgg ggaaaggcgg tcagtttcgt
     9301 ccggaatttt tgcgcatttc gcccaacaac aaaattccgg caattgttga tcattctcct
     9361 gccgatggcg gcgaaccgct aagcctcttt gaatctggtg ccattttgtt gtatctggct
     9421 gagaaaacgg ggctcttttt gagtcatgaa acgcgtgaac gcgccgccac attacagtgg
     9481 ttattctggc aggtaggcga actggggccg atgcttgggc aaaatcatca ttttaatcac
     9541 gcagcccccc aaaccattcc ttacgctatt gaacgttatc aggttgaaac tcagcgtctt
     9601 taccatgtac taaacaagcg gctggaaaac tcgccctggc tgggaggcga gaactacagc
     9661 attgcggata ttgcctgctg gccgtgggtt aatgcctgga ctcgccagcg aattgacctc
     9721 acaatgtatc cggcagtcaa gaactggcat gagcggatcc gttcgcgccc tgccaccggg
     9781 caggcactgc taaaagcaca actcggtgat gagcgttcgg atagttaaca gaaacaggtt
     9841 ctcgtgtatt atttcatcct aagtaaaaca acggagaacc tgcaatggca caacctgccg
     9901 ctattattcg tataaagaac cttcgtttac gtacgtttat cggaattaag gaagaagaaa
     9961 ttaacaaccg tcaggatatt gttatcaatg tgacgatcca ctaccccgcc gataaagcgc
    10021 gcactagcga agatatcaac gatgcgctga attatcgcac cgtaacgaaa aacattattc
    10081 agcatgtaga gaataaccgt ttctctttgt tggaaaaatt aactcaggat gtgctcgata
    10141 tcgcacgtga acatcactgg gtgacgtatg ctgaagtgga gatcgataaa ctgcacgcgc
    10201 tgcgctacgc cgattcggta tccatgacct taagctggca gcgttaaccg ccatatcggg
    10261 aggctgcatg aacatagtga tcaccggagg gacgggatta attggtcgcc atttgattcc
    10321 gcgtttgctg gagctgggcc atcaaatcac ggtagtgacg cgtaacccac agaaagccag
    10381 ttccgttctc ggccctcggg tgacgctatg gcaagggcta gccgatcaaa gcaacctcaa
    10441 cggcgttgat gcggtaatca acctggccgg agaaccgatt gctgataaac gctggactca
    10501 cgagcaaaaa gagcgtctct gccaaagccg ctggaatatc acgcaaaaac tggtcgattt
    10561 gattaatgcc agcgacacgc cgccgtcggt actcatttcc ggctcggcaa cgggctatta
    10621 tggcgactta ggtgaagtgg tggttaccga agaggaaccg ccgcataacg aatttactca
    10681 taaactctgc gcccgctggg aagagattgc ctgccgggcg caaagtgaca aaacgcgagt
    10741 gtgcctgctg cgaaccggcg tggtactggc accggacggc ggtattctcg gtaaaatgct
    10801 gccaccgttt cgtcttggcc tgggcgggcc gattgactct ggtcggcagt atctggcctg
    10861 gattcatatt gatgatatgg tcaacggtat tctctggctg ctggataacg agctgcgcgg
    10921 gccatttaat atggtttcgc cctacccggt acgcaatgaa caatttgccc atgcgctcgg
    10981 tcacgcgctg catcgcccgg ccattttgcg cgtccccgcg accgccattc gactgttaat
    11041 gggcgaatct tcagtactgg tattaggtgg acaacgcgcg ctgcctaaac ggctggaaga
    11101 agcgggtttt gcgtttcgct ggtacgattt agaagaggcg ctggcggatg tcgttcgctg
    11161 atgtggttta cagcaaacat ccgccagtta actcccggtg ttacaggatt agtggctttg
    11221 cgcgataaga tcgtctggtg aaagtcgggt caccatcata actaactctc tgtctaaacc
    11281 tctatccagc atctcctgag caatacgcag ggcttcttcg tgtttgccct gcattgcgcc
    11341 ttcttcacgt aatctgtcag caatggtcat cagtttctcc ttttcttgtg gtgcgcgttc
    11401 cgctatctca ccaataaatg cacgaaaacg ctgggcatcc cctgtttgta atacgtaatt
    11461 aaacagggct tttagctgtc tgtcattagt gttccctgta actagcagcg aaacaatttg
    11521 gtcgactaat cccaacagat cgcgctgacg aatatgtttc tgaattaact ccaacagcgc
    11581 cattttgcgg tgttgcataa tctcgtcatc cggcaccacg gtaatatcca ccaacggaaa
    11641 cgctgatgaa tatattttgc gggctatagc aggctcggca aattcatcaa gccagcagag
    11701 tgaataagga taaggacttc tgcaaccatg ataaaacagc atcgggatca ccaatggaag
    11761 ctctttatag cccg
//
LOCUS       DADMJB010000134        11688 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.134, whole genome shotgun sequence.
ACCESSION   DADMJB010000134 DADMJB010000000
VERSION     DADMJB010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11688)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11688)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11688
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.134"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(67..714)
                     /gene="ychE"
                     /locus_tag="JN078_003151"
     CDS             complement(67..714)
                     /gene="ychE"
                     /locus_tag="JN078_003151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAAT family transporter YchE"
                     /protein_id="HAY9042269.1"
                     /translation="MIQTFFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTAAARN
                     KTNLTANLSVAIILWISLFLGDTILQLFGISIDSFRIAGGILVVTIAMSMISGKLGED
                     KQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSISYLFGFFVAIALF
                     ALCCWGLFRMAPWLVRVLRQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN"
     gene            1192..3867
                     /gene="adhE"
                     /locus_tag="JN078_003152"
                     /gene_synonym="adhC"
     CDS             1192..3867
                     /gene="adhE"
                     /locus_tag="JN078_003152"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HAY9042270.1"
                     /translation="MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAAD
                     ARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGILSEDDTFGTITIAE
                     PIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKDATNKAADIVLQAAIAA
                     GAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTP
                     VVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFATHGGYLLQG
                     KELKAVQDVILKNGALNAAIVGQPAYKIAELAGFSVPENTKILIGEVTVVDESEPFAH
                     EKLSPTLAMYRAKDFEDAVEKAEKLVAMGGIGHTSCLYTDQDNQPARVSYFGQKMKTA
                     RILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAEN
                     MLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGV
                     ETEVFFEVEADPTLSIVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHF
                     EELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSGTGSEVTPFAVVTDDATGQKYPLAD
                     YALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHAMEAYVSVLASEFSDGQALQALKLL
                     KEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLA
                     NALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKL
                     LAWLETLKAELGIPKSIREAGVQEADFLANVDKLSEDAFDDQCTGANPRYPLISELKQ
                     ILLDTYYGRDYVEGETAAKKEAAPAKAEKKAKKSA"
     gene            3991..4887
                     /locus_tag="JN078_003153"
                     /pseudo
     CDS             3991..4887
                     /locus_tag="JN078_003153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904641.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
     gene            complement(5169..5786)
                     /gene="tdk"
                     /locus_tag="JN078_003154"
     CDS             complement(5169..5786)
                     /gene="tdk"
                     /locus_tag="JN078_003154"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HAY9042271.1"
                     /translation="MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRF
                     GAGKVSSRIGLSSPAKLFNQNSSLFDEIRAEHEQQAIHCVLVDECQFLTRQQVYELSE
                     VVDQLDIPVLCYGLRTDFRGELFIGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQA
                     GRPYNEGEQVVIGGNERYVSVCRKHYKEALQVGSLTAIQERHRHD"
     gene            6391..6804
                     /gene="hns"
                     /locus_tag="JN078_003155"
     CDS             6391..6804
                     /gene="hns"
                     /locus_tag="JN078_003155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator H-NS"
                     /protein_id="HAY9042272.1"
                     /translation="MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEE
                     SAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKARRAQRPAKYSYVDE
                     NGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ"
     gene            complement(6948..7856)
                     /gene="galU"
                     /locus_tag="JN078_003156"
     CDS             complement(6948..7856)
                     /gene="galU"
                     /locus_tag="JN078_003156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HAY9042273.1"
                     /translation="MAAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQY
                     VVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHV
                     TIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFD
                     ETGHSQIMVEQVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRY
                     VLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAF
                     VEYGIRHNTLGTEFKAWLEEEMGIKK"
     gene            complement(8058..9071)
                     /gene="rssB"
                     /locus_tag="JN078_003157"
     CDS             complement(8058..9071)
                     /gene="rssB"
                     /locus_tag="JN078_003157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator RssB"
                     /protein_id="HAY9042274.1"
                     /translation="MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDAL
                     ELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGV
                     EDVLLKPVKDLNRLREMVFACLYPSMFNSRVEEEERLFRDWDATVDNPAAAAKLLQEL
                     QPPVQQVISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALL
                     LRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLI
                     LVSAGLNATLNTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLML
                     SAE"
     gene            complement(9163..10068)
                     /gene="rssA"
                     /locus_tag="JN078_003158"
     CDS             complement(9163..10068)
                     /gene="rssA"
                     /locus_tag="JN078_003158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase RssA"
                     /protein_id="HAY9042275.1"
                     /translation="MRKIKIGLALGSGAARGWSHIGVINALKKVGIEIDIVAGCSIGS
                     LVGAAYACDRLSALEDWVTSFSYWDVLRLMDLSWQRGGLLRGERVFNQCREIMPETEI
                     ENCSRRFAAVATNLSTGRELWFTEGDLHLAIRASCSIPGLMAPVAHNGYWLVDGAVVN
                     PIPISLTRALGADIVIAVDLQHDAHLMQQDLLSFNVSEENSENGESLPWHARLKERLG
                     SITTRRAVTAPTATEIMTTSIQVLENRLKRNRMAGDPPDILIQPVCPQISTLDFHRAH
                     AAIAAGQLAVERKMDELLPLVRTNI"
     gene            10181..10639
                     /locus_tag="JN078_003159"
     CDS             10181..10639
                     /locus_tag="JN078_003159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HAY9042276.1"
                     /translation="MSQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQ
                     DADYLIKTWHPSCGAAALRAELMAGFAHTEWLGLTVFEHCWQDADNIGFVSFVARFTE
                     GGKTGAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ"
     gene            10689..11531
                     /gene="purU"
                     /locus_tag="JN078_003160"
     CDS             10689..11531
                     /gene="purU"
                     /locus_tag="JN078_003160"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HAY9042277.1"
                     /translation="MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHR
                     TGRFFMRTELEGIFNDSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLL
                     MKANYGGLDVEIAAVIGNHDTLRSLVERFDIPFELVNHEGLSRNEHDQKMADAIDAYK
                     PDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAH
                     YVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYKVLAQRVFVYGNR
                     TIIL"
BASE COUNT         3159 a         2915 c         2650 g         2964 t
ORIGIN      
        1 cgggaacaaa gtaaaaataa tgacgaagta aacggagcat ggcagctccg tttcatttga
       61 aaggaattaa ttaagcaggc cggggaaaat ccccttaata ccagtaacga taaattcaat
      121 ccccaatgcc atcagcaata gccccataat acgcgtaatc acgttgatgc cggtctggcg
      181 taaaacccgt accagccaag gtgccatgcg gaacaatccc cagcaacata aagcgaacaa
      241 tgcaatagcc acaaagaaac caaacagata gctaatgctg tgataacgcg taccccagac
      301 gatggtagaa ctgatcgccc ctggccccgc catcaacggc aacgccaatg gcaccacacc
      361 aatgctttca cgtaccgcgg tttctgattt ttcttgcttg ttctgtttat cctcgccaag
      421 cttgccgctg atcatcgaca tcgctatcgt caccaccagg atgcccccgg cgatacggaa
      481 cgaatcaatt gatataccaa aaagttgcag aatcgtgtcg ccgagaaaaa gcgagatcca
      541 caagataatg gccacagaca ggttggctgt aaggttagtt ttgtttcgcg ctgccgctgt
      601 ctgataactg gtcatgctga taaagacggg aataatccct accgggttga ccagcgcaaa
      661 taacccgatg aaaaatttga agtaaacggg aaaatcaaaa aaggtctgaa tcacggttag
      721 ctccgaagca aaagccggat aatgttagcc ataaataagg ttgaaaagac gcgctgacaa
      781 tacgcctttt gacagcattt ttcacctcct aactacttaa aattgctatc attcgttatt
      841 gttatctagt tgtgcaaaac atgctaatgt agccaccaaa tcatactaca atttattaac
      901 tgttagctat aatggcgaaa agcgatgctg aaaggtgtca gctttgcaaa aaatttgatt
      961 tggatcacgt aatcagtacc cagaagtgag taatcttgct tacgccacct ggaagtgacg
     1021 cattagagat aataactcta atgtttaaac tcttttagta aatcacagtg agtgtgagcg
     1081 cgagtaagct tttgattttc ataggttaag caaatcatca ccgcactgac tatactctcg
     1141 tattcgagca gatgatttac taaaaaagtt taacattatc aggagagcat tatggctgtt
     1201 actaatgtcg ctgaacttaa cgcactcgta gagcgtgtaa agaaagccca gcgtgaatat
     1261 gccagtttca ctcaagagca agtagacaaa atcttccgcg ccgccgctct ggctgctgca
     1321 gatgctcgaa tcccactcgc gaaaatggcc gttgccgaat ccggcatggg tatcgtcgaa
     1381 gataaagtga tcaaaaacca ctttgcttct gaatatatct acaacgccta taaagatgaa
     1441 aaaacctgtg gtattctgtc tgaagacgac acttttggta ccatcactat cgctgaacca
     1501 atcggtatta tttgcggtat cgttccgacc actaacccga cttcaactgc tatcttcaaa
     1561 tcgctgatca gtctgaagac ccgtaacgcc attatcttct ccccgcaccc gcgtgcaaaa
     1621 gatgccacca acaaagcggc tgatatcgtt ctgcaggctg ctatcgctgc cggtgctccg
     1681 aaagatctga tcggctggat cgatcaacct tctgttgaac tgtctaacgc actgatgcac
     1741 cacccagaca tcaacctgat cctcgcgact ggtggtccgg gcatggttaa agccgcatac
     1801 agctccggta aaccagctat cggtgtaggc gcgggcaaca ctccagttgt tatcgatgaa
     1861 actgctgata tcaaacgtgc agttgcatct gtactgatgt ccaaaacctt cgacaacggc
     1921 gtaatctgtg cttctgaaca gtctgttgtt gttgttgact ctgtttatga cgctgtacgt
     1981 gaacgttttg caacccacgg cggctatctg ttgcagggta aagagctgaa agctgttcag
     2041 gatgttatcc tgaaaaacgg tgcgctgaac gcggctatcg ttggtcagcc agcctataaa
     2101 attgctgaac tggcaggctt ctctgtacca gaaaacacca agattctgat cggtgaagtg
     2161 accgttgttg atgaaagcga accgttcgca catgaaaaac tgtccccgac tctggcaatg
     2221 taccgcgcta aagatttcga agacgcggta gaaaaagcag agaaactggt tgctatgggc
     2281 ggtatcggtc atacctcttg cctgtacact gaccaggata accaaccggc tcgcgtttct
     2341 tacttcggtc agaaaatgaa aacggctcgt atcctgatta acaccccagc gtctcagggt
     2401 ggtatcggtg acctgtataa cttcaaactc gcaccttccc tgactctggg ttgtggttct
     2461 tggggtggta actccatctc tgaaaacgtt ggtccgaaac acctgatcaa caagaaaacc
     2521 gttgctaagc gagctgaaaa catgttgtgg cacaaacttc cgaaatctat ctacttccgc
     2581 cgtggctccc tgccaatcgc gctggatgaa gtgattactg atggccacaa acgtgcgctc
     2641 atcgtgactg accgcttcct gttcaacaat ggttatgctg atcagatcac ttccgtactg
     2701 aaagcagcag gcgttgaaac tgaagtcttc ttcgaagtag aagcggaccc gaccctgagc
     2761 atcgttcgta aaggtgcaga actggcaaac tccttcaaac cagacgtgat tatcgcgctg
     2821 ggtggtggtt ccccgatgga cgccgcgaag atcatgtggg ttatgtacga acatccggaa
     2881 actcacttcg aagagctggc gctgcgcttt atggatatcc gtaaacgtat ctacaagttc
     2941 ccgaaaatgg gcgtgaaagc gaaaatgatc gctgtcacca ccacttctgg tacaggttct
     3001 gaagtcactc cgtttgcggt tgtaactgac gacgctactg gtcagaaata tccgctggca
     3061 gactatgcgc tgactccgga tatggcgatt gtcgacgcca acctggttat ggacatgccg
     3121 aagtccctgt gtgctttcgg tggtctggac gcagtaactc acgccatgga agcttatgtt
     3181 tctgtactgg catctgagtt ctctgatggt caggctctgc aggcactgaa actgctgaaa
     3241 gaatatctgc cagcgtccta ccacgaaggg tctaaaaatc cggtagcgcg tgaacgtgtt
     3301 cacagtgcag cgactatcgc gggtatcgcg tttgcgaacg ccttcctggg tgtatgtcac
     3361 tcaatggcgc acaaactggg ttcccagttc catattccgc acggtctggc aaacgccctg
     3421 ctgatttgta acgttattcg ctacaacgcg aacgacaacc cgaccaagca gactgcattc
     3481 agccagtatg accgtccgca ggctcgccgt cgttatgctg aaattgctga ccacctgggt
     3541 ctgagcgcac cgggcgaccg tactgctgct aagatcgaga aactgctggc atggctggaa
     3601 acgctgaaag ctgaactggg tattccgaaa tctatccgtg aagctggcgt tcaggaagca
     3661 gacttcctgg cgaacgtgga taaactgtct gaagatgcat tcgatgacca gtgcaccggc
     3721 gctaacccgc gttacccgct gatctccgag ctgaaacaga ttctgctgga tacctactac
     3781 ggtcgtgatt atgtagaagg tgaaactgca gcgaagaaag aagctgctcc ggctaaagct
     3841 gagaaaaaag cgaaaaaatc cgcttaatca gtagcgctgt ctggcaacat aaacggcccc
     3901 ttctgggcaa tgccgatcag ttaaggatta gttgaccgat ccttaaactg aggcactata
     3961 acggcttcca caacagggag ccgttttctt atgccacttc tcaatgatct gctcgatttc
     4021 agtgaccatc cgcttatgcc tccgccctct gcacaactat ttgcagaaca ccttcccacc
     4081 gagtggatac aacactgcct gacgctttct gctcatgcga ccgttcgccg ccgtcgttta
     4141 ccgggggaca tggttatctg gatggtggtg caatgagcca attaccgatg ttgttcgccg
     4201 tctgaacctg agcgcggatg gcgaagcggg gatgaacctg ctggcccgca gcgctgtcac
     4261 ccaagcgcgt cagcgcgtgg gggccgcccc agtggaatgg ctcttccgcc agaccgcaca
     4321 gacaggggcg cggaacgtta cctgaaggat gactggcacg gcctgcaact ttttgccatt
     4381 gatggcgcac agttcaggac acctgataaa cccgagctgc gtgaatatta tgggtctgcc
     4441 aacacatcca ctaagcggca gaacgcctac ccggttatgc gtctggtggc cttaatgaac
     4501 ctgggaagtc acattctgct gaatgccgtg accgcacctt accggcagag cgaaactgtg
     4561 ctggcccact ccatgctcgc caccatcccg gataactcta ttacgttgtt tgataagctt
     4621 ttttacagcg aagacctgct gctaacgctg aaccagaagg gttgtaaccg ccactggcta
     4681 ctgcctgcgt ggaagaatat cgcatcagaa atgatagagc tgggaaacac ggcgtcacca
     4741 gggaccatcc cgaaacgact ggagcatctt cggggtgctc tggaagtggt gttcataaca
     4801 aaacgccccc gaccatcaag gccgaggtcg gttaagatat caaaaacccg ttatcctgtg
     4861 aaacatagtg ccgctcctct taagtgaacg gcattgccct tctggggccg tattttttgt
     4921 ttacccaaag caacttttcc ataaaccgac agcattagcc ttcatcatat ttgcgacgat
     4981 gtataacgcc taaacacagg gatattgtac tttacaggtc acaagtcaac gtcggtgctt
     5041 aagagccctg tgaggcgtat agcggcgtta aaaaactgcc gagaagggta tatagcccgg
     5101 aagaagtgcg taaaacgaac tgacaggata aaagtgccct gctcaccctg tcagtaaaga
     5161 aattcttatt aatcgtggcg atgcctttcc tgaatagccg ttaatgagcc gacttgtaac
     5221 gcctctttat agtgtttacg gcatacagaa acgtatcgtt cattaccacc aattaccacc
     5281 tgctcacctt cgttataagg tctgcctgct tgatcaagac gcagcaccat gcttgcttta
     5341 cggccacaaa aacagatggt ttttaattca accagtttgt cggaccatgc cagtaagtat
     5401 tggctgccaa taaataattc acctcgaaaa tcggtacgta aaccataaca aagtacgggt
     5461 atatcgagtt gatcgacaac ctccgataat tcatatactt gttgtctggt taaaaactgg
     5521 cattcatcaa ccagtacgca atgaattgcc tgctgttcat gttccgcacg aatctcatca
     5581 aataatgatg aattttggtt aaataatttt gcaggcgatg acaaacctat acgcgaactg
     5641 actttcccgg caccaaagcg atcatcaatt tctgccgtat atacgacagt gcgcatgccg
     5701 cgttcttggt aattgtatga agattgcaac aatgctgtag acttacccgc attcattgcg
     5761 gaatagtaga aatatagctg tgccatcagc cacaggccct caatgatatg aaataaagtt
     5821 ggctggagtt tatcataatt cgtcagtttt tcagctcaac agtatgcaca gaagtgggta
     5881 tatgcgttct cccttacgaa gccttgcata atccttctga gctatcatta caactgcctc
     5941 gcttgttata agcgggtaaa tgactgctgg taactattca caatctttaa cctgttgcgc
     6001 aagtaatagc cctctgttga cctccaggag atagtgcaat actaagtcca tgctcttatt
     6061 gcgactgttc tacttttcat cattcgctta atagggaatt ctcgtaaaca caactaatac
     6121 agaagactga aaggccgtca gcctacgata atctccccat aaaatgtgac atgaatcagg
     6181 aagttttaac ctcacgtgct gcgaaatcat cggtgtaaat agggctatat gccgcgtctt
     6241 ttctggctaa ttttatgaaa agatatttat tggcggcaca aaataaagaa caattttgaa
     6301 ttccttacat tcctggctat tgcacaactg aatttaaggc tctattatta cctcaacaaa
     6361 ccaccccaat ataagtttga gattactaca atgagcgaag cacttaaaat tctgaacaac
     6421 atccgtactc ttcgtgcgca ggcaagagaa tgtacacttg aaacgctgga agaaatgctg
     6481 gaaaaattag aagttgttgt taacgaacgt cgcgaagaag aaagcgcggc tgctgctgaa
     6541 gttgaagagc gcactcgtaa actgcagcaa tatcgcgaaa tgctgatcgc tgacggtatt
     6601 gacccgaacg aactgctgaa tagccttgct gccgttaaat ccggcaccaa agctagacgt
     6661 gctcagcgtc cggcaaaata tagctatgtt gacgaaaacg gcgaaactaa aacctggact
     6721 ggccagggcc gtactccagc tgtaatcaaa aaagcaatgg atgagcaagg taaatccctc
     6781 gacgatttcc tgatcaagca ataatctttt gtagattgca attgctaaaa atcccgccat
     6841 cggcgggatt ttttattgtc cggtttaaga caatttaata agaataagct ataaaaaaac
     6901 ggcgtcgatt gttcaacgcc gtttcgtgga taacaccgat atggatgtta cttcttaatg
     6961 cccatctctt cttcaagcca ggctttaaat tccgtgccaa gggtgttatg acgaataccg
     7021 tattcaacga aggcctgcat gtaacctaat ttattaccgc agtcatggct cttccctttc
     7081 atatgatagg cttccaccgt ttctttttcg atcagcatat caattgcgtc ggtgagctga
     7141 atttcatcac cagctcccgg aggggttttt gccagcaacg gccaaatatc cgcgctaagt
     7201 acgtaacgac ccacaatagc gagattagac ggcgcaacat ccgctttcgg tttttctacc
     7261 acaccaacca tcggtacact ttcacccggc gctaattcaa cgcctttgca atccacaacg
     7321 ccatatgcgg tcacatcagc aacctgttca accatgatct ggctatgacc cgtttcatca
     7381 aagcggcgga tcatctctgc caggttatcc tgtgacaaat cggattcata ttcatccaga
     7441 ataacatcag gcaaaataac agctaccggt tcatcaccca ctaccgggtg agcacacaat
     7501 accgcgtgtc ccaggccttt cgccagcccc tgacgaactt gcataatagt cacgtgcggc
     7561 ggacaaatag actgcacttc atcaagcagt tgacgtttta cacgtttttc cagcattgct
     7621 tccagttcaa aactggtatc aaagtggttt tcaatcgagt ttttagatga gtgcgtaacc
     7681 agcacaattt cagtaatgcc agccgcaata cattcattca cgacgtattg aattaatggc
     7741 ttatcgacaa gtggcagcat ctctttcggg atggctttcg tcgccggcaa catcctggtt
     7801 cctaatcccg caacggggat aacggctttt ttgactttcg tattaatggc agccatttaa
     7861 attctcctgg actgttcgtg ttttgaacgt gttcatattt ctgtatcgca tcccagtata
     7921 tcagcacccc gaaggggcta agttctgaaa aggaggcgag ttagcataat taagacaatt
     7981 acttatacga atggcgacga tagtaccacc agccgacatt agcaggtaat gcaaatttag
     8041 tccgcgttat cgtttgctca ttctgcagac aacatcaagc gcagtcgacc accggttccc
     8101 catatttggc attgccaggc atcgcatcgc tggctcaatt gattcaaata agcgttacct
     8161 aaagtgccta acggaacacc attactgatt tgcacctggt gttcgccggt atttaacgtc
     8221 gcattcagac ccgcagaaac cagaatgaga tttttcagtt cgcgatgata atagccaact
     8281 aatagcggaa actgccccgg cagattggcc tgacggagta aatggtttac ctgcttcaat
     8341 aacgcgccca gctctggcaa ccgttgattt tggtgtgcaa gctgttcctg taataatccg
     8401 ttaaacaatg cgcgtaataa caaggcagca agtacgccat tatgtccagc tcgggtgaca
     8461 tcaaggcaat aaaatgccag atcgttttcc gaaagtgcgg caatatcaag caccaggccg
     8521 ggtttgtccg cggcaaccaa ttgacgataa ttaacccggc aatgggaaat cacctgctga
     8581 accggcggtt gtagttcctg taataatttc gccgctgcgg cagggttatc aaccgttgca
     8641 tcccaatcgc gaaaaagcct ttcctcttcc tcaacgcgcg aattaaacat gctgggatag
     8701 agacaggcaa aaaccatctc gcgcaagcga ttcagatctt taactggttt cagcaaaaca
     8761 tcttcaacgc ccagacgtaa cgctttggca atatctgcca tattttcagt ggcagatatc
     8821 accagaactg gggtctggtc gcctctgtta cgtatatgct ccagcagttt aagcccgttc
     8881 attcgtggca tcgcgatatc acatatcatc aggtctggag tgaaacctcc cagcaactca
     8941 agggcatcca ccccatcagc cgccagtacc gttgtcgctc ccaatgagga aaaccatgaa
     9001 tccagaagcg agcgaaatac ctgctcatct tcaacaatga gaatctgttt tccgaccaat
     9061 ggctgcgtca tgttctctcc cctgactggc tttactcaat agtggcatgc tattgccacc
     9121 tgcgcctgtc agaattaact taagtgtaga taaaaattct ggtcaaatgt tggtgcgtac
     9181 caacggcaaa agttcgtcca ttttcctttc cactgccagc tgtccggccg caatggcagc
     9241 gtgcgcgcga tggaaatcaa gcgtagatat ttgcgggcaa acaggttgaa tcagaatatc
     9301 gggcggatca cctgccatgc ggttcctttt aaggcggttc tccagcacct ggatagaagt
     9361 ggtcataatc tctgttgccg ttggcgctgt caccgcccga cgtgttgtta tactgcctaa
     9421 cctttctttc agacgcgcat gccacggcaa agattcacca ttctcgctat tttcttcact
     9481 gacattaaag gagagcaaat cttgttgcat caaatgagca tcgtgctgca ggtcgaccgc
     9541 tatcacaata tcagccccca atgcacgcgt gagggaaata ggaattgggt taactactgc
     9601 tccatcaacc agccagtagc cgttatgtgc aacaggtgcc atgagtcctg gaatactgca
     9661 tgatgcgcga atagcaagat ggagatcgcc ttcagtaaac cataattcac gtcccgtact
     9721 taaattggtg gcaacagccg caaagcgacg ggaacaattt tcgatctctg tttccggcat
     9781 tatttcgcgg cattgattga agacacgctc gccgcgcagt aacccaccgc gctgccagga
     9841 gagatccatc aggcgtaaaa catcccaata actgaaagag gtcacccaat cttccagcgc
     9901 agataatcga tcgcatgcat aggcagcgcc caccagcgaa ccaattgaac atcctgcaac
     9961 gatatcaatt tcaataccca ctttttttag cgcattaata acgccaatat gcgaccaacc
    10021 tctcgccgcg ccagatccca gcgccagccc tatttttatc tttctcatta ttcccgcaag
    10081 attcccctgg aatgcaatcg tagccacatc gctactgctc ggttaacata gtgctactca
    10141 ggcggttaat acgccgttat tgtttccagg gagattattt gtgtctcagc tttgtccctg
    10201 tggtagtgct gtcgagtata gcctatgttg ccacccttat gtgtctggtg aaaaggttgc
    10261 acctgatcca gaacatctca tgcgttcgcg ttactgcgct tttgtgatgc aagacgcaga
    10321 ttatttaata aagacctggc atccctcttg tggagcagcg gcgttacgtg ccgaattgat
    10381 ggccggattt gcgcatactg aatggttggg attgaccgta tttgaacatt gttggcagga
    10441 cgccgacaat atcggatttg tcagttttgt tgctcgattt accgaaggtg gcaaaacagg
    10501 tgcaataatt gaacgttcgc gatttttgaa agaaaacggt caatggtact atattgacgg
    10561 tacacgtccg cagtttggtc gcaacgatcc ctgcccttgt ggttcaggta aaaaatttaa
    10621 aaagtgctgc ggccaataat ggttgacggt acggtttagc aaacactctc aacaaggttt
    10681 ttccagcaat gcattcactc caacgtaaag ttctgcgtac tatttgtccg gaccaaaaag
    10741 gtctgatcgc acgtattacc aatatttgct acaagcacga gttaaatatc gtacagaaca
    10801 atgaatttgt tgatcaccgt accgggcgct tttttatgcg cacggaactg gaagggattt
    10861 ttaatgattc caccctgctg gcggatctcg atagcgcatt gccagaaggc tccgtgcgtg
    10921 agctgaatcc tgccggtcgt cgccggatag tgattctggt cactaaagaa gcgcattgcc
    10981 ttggcgattt gttgatgaaa gccaattacg gcggcctgga tgtcgaaatc gcggcagtta
    11041 ttggtaacca cgatacttta cgttctctgg ttgagcgttt tgatattccg tttgagctgg
    11101 taaaccatga agggttaagc cgcaacgagc acgatcaaaa gatggcagac gccattgatg
    11161 cttataaacc tgactatgtg gtgctggcga agtatatgcg ggtattaacg ccggaatttg
    11221 tggcacgctt cccgaataaa atcatcaata ttcaccattc attcctgcct gcgtttatcg
    11281 gcgcacgtcc ttatcaccag gcctatgaac gtggtgtgaa gattattggc gcaaccgctc
    11341 actatgtgaa tgacaatctg gacgaaggcc caatcatcat gcaggacgtt attcatgtcg
    11401 atcataccta cacagctgaa gatatgatgc gcgcaggtcg tgacgtcgag aaaaacgttt
    11461 taagtcgtgc gctatacaaa gtactggcac agcgcgtctt tgtttacggt aatcggacga
    11521 ttattcttta atcgccagca aaaataactg gttaccttta atccgttacg gatgaaaatt
    11581 acgcaaccag ttcatttttc tcaacgtaac actttacagc ggcgcgtcat ttgatatgat
    11641 gcgccccgct tcccgataag ggagcaggcc agtaaaaagc attacccc
//
LOCUS       DADMJB010000135        11614 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.135, whole genome shotgun sequence.
ACCESSION   DADMJB010000135 DADMJB010000000
VERSION     DADMJB010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11614)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11614)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11614
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.135"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(37..1023)
                     /locus_tag="JN078_003161"
                     /pseudo
     CDS             complement(37..1023)
                     /locus_tag="JN078_003161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310582.1"
                     /note="PtrB; oligopeptidase that cleaves peptide bonds
                     following arginine and lysine residues; incomplete;
                     partial in the middle of a contig; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase B"
     gene            complement(1232..1891)
                     /locus_tag="JN078_003162"
     CDS             complement(1232..1891)
                     /locus_tag="JN078_003162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
                     /protein_id="HAY9042278.1"
                     /translation="MANWLNQLQSLLGQSSSSISSSADQGLGKLLVPGALGGLAGLLV
                     ANKSARKLLTKYGTNALLVGGGAVAGTVLWNKYKDKIRAAHQDEPQFGAQSTPLDERT
                     ERLILALVFAAKSDGHIDAKERAAIDQQLREAGVEEQGRVLIEQAIEQPLDPQRLATG
                     VRNEEEALEIYFLSCAAIDIDHFMERSYLNALGDALKIPQDVRDGIERDLEQQKRTLA
                     E"
     gene            complement(2218..2574)
                     /gene="yebF"
                     /locus_tag="JN078_003163"
     CDS             complement(2218..2574)
                     /gene="yebF"
                     /locus_tag="JN078_003163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310584.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YebF"
                     /protein_id="HAY9042279.1"
                     /translation="MKKRGAFLGLLLVSACASVFAANNETSKSVTFPKCEGLDAAGIA
                     ASVKRDYQQNRVARWADDQKIVGQADPVAWVSLQDIQGKDDKWSVPLTVRGKSADIHY
                     QVSVDCKAGMAEYQRR"
     gene            complement(2641..2935)
                     /gene="yebG"
                     /locus_tag="JN078_003164"
                     /pseudo
     CDS             complement(2641..2935)
                     /gene="yebG"
                     /locus_tag="JN078_003164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310585.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage-inducible protein YebG"
     gene            3069..4247
                     /gene="purT"
                     /locus_tag="JN078_003165"
     CDS             3069..4247
                     /gene="purT"
                     /locus_tag="JN078_003165"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HAY9042280.1"
                     /translation="MTLLGTALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRY
                     ADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAIATDMLIQLEEERLNVV
                     PCARATKLTMNREGIRRLAAEELQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSS
                     SGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFC
                     APVGHRQEDGDYRESWQPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCSDEVI
                     FSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPVGGIRQYGPAASAVILPQLTSQN
                     VTFDNVQNAVGADLQIRLFGKPEIDGSRRLGVALATAESVVDAIERAKHAAGQVKVQG
                     "
     gene            complement(4303..4944)
                     /locus_tag="JN078_003166"
     CDS             complement(4303..4944)
                     /locus_tag="JN078_003166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HAY9042281.1"
                     /translation="MKNWKTSAESILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVL
                     EVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLK
                     AATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCP
                     TGGISPANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAREAVEGAKL"
     gene            complement(4981..6792)
                     /gene="edd"
                     /locus_tag="JN078_003167"
     CDS             complement(4981..6792)
                     /gene="edd"
                     /locus_tag="JN078_003167"
                     /EC_number="4.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020244583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
                     /protein_id="HAY9042282.1"
                     /translation="MNPQLLRVTNRIIERSRETRSAYLARIEQAKTSTVHRSQLACGN
                     LAHGFAACQPEDKASLKSMLRNNIAIITSYNDMLSAHQPYEHYPEIIRKALHEANAVG
                     QVAGGVPAMCDGVTQGQDGMELSLLSREVIAMSAAVGLSHNMFDGALFLGVCDKIVPG
                     LTMAALSFGHLPAVFVPSGPMASGLPNKEKVRIRQLYAEGKVDRMALLESEAASYHAP
                     GTCTFYGTANTNQMVVEFMGMQSPGSSFVHPDSPLRDALTAAAARQVTRMTGNGNEWM
                     PIGKMIDEKVVVNGIVALLATGGSTNHTMHLVAMARAAGIQINWDDFSDLSDVVPLMA
                     RLYPNGPADINHFQAAGGVPVLVRELLKAGLLHEDVNTVAGFGLSRYTLEPWLNNGEL
                     DWREGAEKSLDSNVIASFEQPFSHHGGTKVLSGNLGRAVMKTSAVPVENQVIEAPAVV
                     FESQHDVMPAFEAGLLDRDCVVVVRHQGPKANGMPELHKLMPPLGVLLDRCFKIALVT
                     DGRLSGASGKVPSAIHVTPEAYDGGLLAKVRDGDIIRVNGQTGELTLLVDEAELAARE
                     PHIPDLSASRVGTGRELFSALREKLSGAEQGATCITF"
     gene            complement(7027..8502)
                     /gene="zwf"
                     /locus_tag="JN078_003168"
     CDS             complement(7027..8502)
                     /gene="zwf"
                     /locus_tag="JN078_003168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HAY9042283.1"
                     /translation="MAVTQTAQACDLVIFGAKGDLARRKLLPSLYQLEKAGQLNPDTR
                     IIGVGRADWDKAAYTKVVREALETFMKETIDEGLWDTLSARLDFCNLDVNDTAAFNRL
                     GAMLDQKNRITINYFAMPPSTFGAICKGLGEAKLNAKPARVVMEKPLGTSLATSQEIN
                     DQVGEYFEECQVYRIDHYLGKETVLNLLALRFANSLFVNNWDNRTIDHVEITVAEEVG
                     IEGRWGYFDKAGQMRDMIQNHLLQILCMIAMSPPSDLSADSIRDEKVKVLKSLRRIDR
                     SNVREKTVRGQYTAGFAQGKKVPGYLEEEGANKSSNTETFVAIRVDIDNWRWAGVPFY
                     LRTGKRLPTKCSEVVVYFKTPELNLFKESWQDLPQNKLTIRLQPDEGVDIQVLNKVPG
                     LDHKHNLQITKLDLSYSETFNQTHLADAYERLLLETMRGIQALFVRRDEVEEAWKWVD
                     SITEAWAMDNDAPKPYQAGTWGPVASVAMITRDGRSWNEFE"
     gene            8840..9709
                     /locus_tag="JN078_003169"
     CDS             8840..9709
                     /locus_tag="JN078_003169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HAY9042284.1"
                     /translation="MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEA
                     NVSEPTVNRFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESA
                     MATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYS
                     DDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLARE
                     ATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES
                     RFDKQLLNLSDDR"
     gene            9837..11279
                     /locus_tag="JN078_003170"
     CDS             9837..11279
                     /locus_tag="JN078_003170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase II"
                     /protein_id="HAY9042285.1"
                     /translation="MSRRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSP
                     EDHKMRADKVREIAAKLGRHVAILGDLQGPKIRVSTFKEGKVFLNIGDKFLLDANLGK
                     GEGDKEKVGIDYKGLPADVVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNK
                     GINKLGGGLSAEALTEKDKADIKTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDA
                     KIVAKVERAEAVCSQDAMDDIILASDVVMVARGDLGVEIGDPELVGIQKALIRRARQL
                     NRAVITATQMMESMITNPMPTRAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAM
                     ARVCLGAEKIPSINVSKHRLDVQFDNVEEAIAMSAMYAANHLKGVTAIITMTESGRTA
                     LMTSRISSGLPIFAMSRHERTLNLTALYRGVTPVHFDSANDGVAAASEAVNLLRDKGY
                     LMSGDLVIVTQGDVMSTVGSTNTTRILTVE"
     gene            complement(11339..11557)
                     /locus_tag="JN078_003171"
     CDS             complement(11339..11557)
                     /locus_tag="JN078_003171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001499009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042286.1"
                     /translation="MEYQADYYITINDSIKTWVQTQYSKDSGLPMAVIGHSVAEEAGM
                     RRLASYLDLHSGYPCIHFTGGCDYDWIE"
BASE COUNT         2817 a         2991 c         2898 g         2908 t
ORIGIN      
        1 aacaaatggt agtgtccgct attgccagta cacctcaacc agccagtcgg taaacagcgt
       61 aaacccttcc agcatgatgt tttcgcgtgg cggaattaac tcttcccact gttgctcatc
      121 acgcaggcgg gtacggtata agccaaagtt tttgccgtgg cggttggaac gcagataaaa
      181 ccgatgctgg tagtgatcaa ggctgtattc gtgatctttg cggcgcggca gaaaaacaaa
      241 cggctcggca tcggccattt ccgcgtccag caggcgaact tcactggtgg tggcgctggc
      301 caaatgaatg actacatagt gcttcgaggt cgttttatgc aggctgacgt aataggtatc
      361 gtctttttct tcgtagatca gtttatcttg cgatgctggc gtaccgatgg cgtgacgcca
      421 gacctgataa ggcagcagcg tcaccggatg cttgcgaaca tagtagaaag tccaggagtc
      481 atttgcccag acaaagctgg gttcaacgtt atccagcagt tccgggtacc agttaccagt
      541 ttccagatta cgaaaacgaa tgccgtactg gcgtcgggaa agaaaatctt ctgccagcgc
      601 cataatggtg ttatcgggcg taatcgccat tccgcccatc gaataaaact cactatgagc
      661 tgcgcgctta ttggcatcga gcaatgtttc ccactcatcc cactcttcac tgaatgccga
      721 ttgacgctgg tagatagcat attcacagcc tggttcataa atatgccgat agcggtagcc
      781 atttttgatg tagggcgcag aaacttctcg ttgcggaatg cggtcgatga tttcttttaa
      841 gatgcgatcc tgcaaggctt gttgtgaggc catcacccga tgaccgtaac tattttcttg
      901 ttgcaggtag tccaggactt ctggctgaga acgcgtatcg tcccgcagcc agtagtaatt
      961 atcgatgcgc gtatcgccat gaagcgtcat ggcgtgggga atgcgggcgg cttttggtag
     1021 catgttattg ttctttctgg ttgaaacatc ttataagggt ggcaaaactc accggggatg
     1081 caagcgaaac aggggagtca ttgcttagat gatgacaggt aatggcgcgg atatcgaatg
     1141 ttatgcagac agagaaaatc agcctgttca aatggctgtg cgattctgga tagcccgaaa
     1201 tagtcaactt caggctatcc agagagcgga attattccgc caaagtgcgt ttttgctgtt
     1261 cgagatcgcg ttcaatgccg tcacgaacat cctgggggat tttcagcgcg tcacccagtg
     1321 cattcaggta actgcgttcc ataaaatggt caatatcaat agccgcgcaa ctcaggaaat
     1381 agatttccag cgcctcttct tcattgcgga ccccggtagc caagcgttgt ggatccagcg
     1441 gttgttcgat tgcctgctca atgagtacac gcccctgctc ttccacgccg gcttcacgca
     1501 attgctggtc gattgccgca cgttctttgg catcaatatg accatcactt ttagcggcaa
     1561 agaccagcgc aaggatcaaa cgttctgtac gctcatccag cggcgtactt tgcgcgccaa
     1621 actgcggttc gtcctgatgc gccgcgcgaa ttttatcttt gtatttattc cacagcaccg
     1681 tacccgctac cgctccgccg ccaaccagta acgcgttggt gccatatttc gtaagaagtt
     1741 tacgtgctga tttatttgcg accagcagcc cagccagtcc gcctaatgcg cctggcacta
     1801 acagtttgcc caatccctga tccgcagacg aggagataga agaactgctt tgcccaagca
     1861 gggattgcag ttgatttaac cagttagcca tatttgctcc tcaataacca tttttagtgc
     1921 ctgtagcata gcggatgagg atgtcagaaa atgtatatcg agacaaaaga tgcgcaaata
     1981 agcggggcgg taggccgtta ttcaaagaaa ttcgcgccag gtaaggtatt tactgtatat
     2041 caggtgataa gggtatttta ggtgaaagta gtttgtcgtt ttgagtggca ttgtttgatg
     2101 ctgattgccc gatgcgacgc tgttgcgtct tctcaggcct acgattgtgg tgcgttctgg
     2161 ggcggacaag gcactcgcgc cgcatccgcc aacggtcaat cgaattatca gaagccatta
     2221 acgccgctga tattccgcca ttcccgcttt gcagtccacg ctgacctggt aatgaatatc
     2281 ggcactttta ccacgcacgg ttagcggtac tgaccattta tcatctttac cctgaatgtc
     2341 ctgcaaactg acccaagcca cgggatcggc ctgaccgaca attttttgat catctgccca
     2401 acgcgccacg cgattttgtt gataatcacg ttttacgctc gcggcaattc cggcagcatc
     2461 cagaccttca cactttggga aagtgaccga cttgctggtt tcattattgg cagcgaaaac
     2521 tgatgcgcag gcagaaacca acaacagccc taaaaacgcc cctctttttt tcatgttttt
     2581 ctccatagca caatgattca ggagaaagca tggtacaaat tgtcaggagc gcaagttgct
     2641 tcaggccgcg tgtgaggcat cttcctcttc ggattcagca ccgacgacct gtgggtgggg
     2701 acggtaattt gccggttttc agaatggtgc tcagcacatc tttttgttct gccagccata
     2761 gcgaaagggc ttcacgttgc tcgtcttcca tttgcactgg agaattagtc agccaggtgt
     2821 caagcagatc cgccgtatca agcattttgt cataagcatc ggcttccttt ttgctggtaa
     2881 acgacatttt ctcttcgccc tcacgaatga ctacgtattt aacttcaacc gccatttgca
     2941 gcctctcata ataactgtga ttttatacag tatatttctt ttcggttgag aaatcaaaat
     3001 caacaataaa gacacacgca aacgttttcg tttatactgc gcgcggaatt aatcagggga
     3061 tattcgttat gacgttatta ggcactgcgc tgcgtccggc agcaactcgc gtgatgttat
     3121 taggctccgg tgaactgggt aaagaagtgg caatcgagtg tcagcgtctc ggcgtagagg
     3181 tgattgccgt cgatcgctat gccgacgcac cagccatgca tgtcgcgcat cgctcccatg
     3241 tcattaatat gcttgatggt gatgcattac gccgtgtggt tgaactggaa aaaccacatt
     3301 atatcgtgcc ggagatcgaa gctattgcca ccgatatgct gatccaactt gaagaggaaa
     3361 gactgaatgt tgtcccctgc gctcgcgcaa cgaaattaac gatgaatcgc gagggtatcc
     3421 gtcgcctagc ggcagaagag ctgcagctgc ccacttccac ttatcgtttt gccgatagcg
     3481 aaagcctttt ccgcgaggcg gttgctgaca ttggctatcc ctgcattgta aaaccggtga
     3541 tgagctcttc cggcaagggg cagacgttta ttcgttctgc agagcaactt gctcaggcat
     3601 ggaagtacgc tcagcaaggc ggtcgcgccg gagcgggccg cgtaattgtt gaaggcgtcg
     3661 ttaagtttga cttcgaaatt accttgctaa ccgtcagcgc ggtggatggc gtccatttct
     3721 gtgcaccggt aggtcatcgc caggaagatg gcgactaccg tgaatcctgg caaccacagc
     3781 aaatgagccc gcttgccctt gaacgtgcgc aggagattgc ccgtaaagtg gtgctggcac
     3841 tgggcggtta tggtctgttt ggtgtcgagc tgtttgtctg tagtgatgag gtgattttca
     3901 gtgaggtctc ccctcgtcca catgataccg ggatggtgac gttaatttct caagatcttt
     3961 cagagtttgc cctgcatgta cgtgccttcc tcggacttcc ggttggcggg atccgtcagt
     4021 atggtcctgc agcttctgcc gttattctgc cacaactgac cagtcagaat gtcacgtttg
     4081 ataatgtgca gaatgccgta ggcgcagatt tgcagattcg tttatttggt aagccggaaa
     4141 ttgatggcag ccgtcgtctg ggtgttgcgc tggcgaccgc tgagagtgtt gttgacgcca
     4201 ttgaacgcgc gaagcacgcc gccggacagg taaaagtaca gggttaaacc cggcaaaaaa
     4261 acgctacaaa aatgcccgat cgtagatcgg gcgttttgac ttttacagct tagcgccttc
     4321 tacagcttca cgcgccagct tagtaatgcg gtcgtaatcg cccgcttcca gcgcatctgc
     4381 cggaaccagc caggaaccac cgatgcacag cacgcttttc agcgccaggt agtcacggta
     4441 gttagccgga gaaataccac ccgtcgggca gaaacggacc tgggagaacg gacccgcgat
     4501 cgcctgcagg gctttcacgc cgccgttagc ttcagccggg aagaatttga actctttcaa
     4561 accgtagtcc atacccagca tcagttcgga aacagtgctg atccccggaa ttagaggaat
     4621 agtcccttcg gtagcagctt tcagcagcgg ctcggtcaga cccgggctaa ttgcgaactg
     4681 tgcacccgct tcagtgactt ctgccagctg ctgtggattc agcaccgtac cggcacccac
     4741 aatcgcttca ggcacttctt tggcgatagc acggatagcg tcaactgcac actcggtacg
     4801 cagagtcact tccagaacgc gcaccccacc agcaaccaac gcttttgcca tcggcactgc
     4861 gtgttccagt ttttttacca cgataaccgg tacaaccggg ccggtggtca ggattgattc
     4921 tgcacttgtt ttccagtttt tcatcagagt tttctctcgc ctgattacaa atttgtcgtc
     4981 ttaaaaagtg atacaggttg cgccctgttc ggcaccggac agtttttcac gcaaggcgct
     5041 gaataattca cgtcctgtcc ccacgcgtga cgcgctcagg tcaggaatgt gcggttcgcg
     5101 agcagccagt tccgcttcgt ctaccagcag cgtcagttcg cctgtctgtc cattcacacg
     5161 aatgatgtcc ccgtcgcgca cttttgccag cagcccgcca tcgtaggctt ctggtgttac
     5221 gtggatagct gacggcactt tacctgaagc gccggagagt cgtccatcgg taactaacgc
     5281 aattttgaaa caccggtcca ataatacacc aagtggcggc atgagtttat gtaattctgg
     5341 cattccgttc gcttttggcc cctgatgacg gacaacaacg acacaatcgc ggtccagcaa
     5401 acccgcttca aaggccggca taacgtcatg ctggctttca aaaacaaccg ctggcgcttc
     5461 aatcacctgg ttctcaaccg gcacggcaga ggttttcata accgcacggc ccaggttacc
     5521 gcttaacact tttgtcccac catgatgaga gaaaggttgt tcgaaggaag cgatcacatt
     5581 gctgtcgagt gatttttccg ccccttcccg ccagtccagt tcaccattat tcagccatgg
     5641 ttcaagggta taacgagaca gaccaaagcc tgccaccgta ttgacatctt catgcagcag
     5701 gcctgctttg agcagttcac gcaccagaac cggtacgcca cctgccgcct ggaagtggtt
     5761 aatatcggcc ggaccgttcg ggtagagacg tgccatcagc ggtacaacat cagaaaggtc
     5821 agagaagtca tcccagttaa tctgaatacc ggccgcgcgc gccatcgcca ccaggtgcat
     5881 ggtgtggtta gtggaaccac cggtcgccag cagtgcaacg ataccgttca ccaccacttt
     5941 ctcatcgatc atcttaccga tcggcatcca ttcattacca ttaccggtca tgcgtgtaac
     6001 ctgacgcgca gcggcagcgg tcaaagcatc gcgcagcgga gaatccggat gaacaaaaga
     6061 agagcctggc gactgcatcc ccataaattc caccaccatc tggttggtgt tggcagtacc
     6121 gtagaaagta catgttcccg gcgcatggta agacgcggct tctgactcca gtaaggccat
     6181 gcggtccact ttaccttcgg cataaagctg gcgaatacgc actttttctt tatttggcaa
     6241 accgcttgcc atcggtccag acggcacaaa caccgcaggc aaatgaccaa acgacagggc
     6301 tgccatcgtc agacccggga caatcttgtc gcacacaccg aggaacagag caccatcaaa
     6361 catgttatgg gacagcccca ccgccgcaga catcgctatc acttcgcggc ttagcagcga
     6421 caattccatt ccatcctgcc cctgggtgac accatcacac atcgccggaa caccgcccgc
     6481 aacctgacca accgcattcg cttcatgcag ggctttacga atgatttctg gatagtgttc
     6541 ataaggctgg tgcgcggaga gcatgtcgtt ataggaggtg atgatggcga tattgttacg
     6601 caacatgctt ttcaaagagg ctttgtcttc tggctggcag gcagcgaaac cgtgtgccag
     6661 gttaccgcat gccaactgcg aacgatgaac ggtcgacgtt ttcgcttgtt ctatccgggc
     6721 gagataagca gagcgagtct cgcgcgaacg ttcaatgatt cgatttgtta cgcgtaacaa
     6781 ttgtggattc ataaaggctc ctgaaattga gttgtcagag caggatgatt cacaacgcgt
     6841 ttcattcaga ggatttatga gtgaaacgcc tgtaaccgga gctcataggg caaaaacgtt
     6901 tcagtcagtg taataaaaaa agcctcgtgg gtgaatccgc acgaggcctg aaagtgtaaa
     6961 aattgttcta caatctgtgc aagatcatgt taccggtaaa ataaccataa aggataagcg
     7021 cagatattac tcaaactcat tccaggaacg accatcacgg gtaatcatcg ccaccgaggc
     7081 aacgggtccc caggttccgg cctgatacgg tttcggcgca tcattgtcca tcgcccacgc
     7141 ctcagtaatg gagtctaccc atttccaggc ttcttccact tcatcacgac gtacaaacag
     7201 tgcctgaata ccacgcatgg tttccagcag cagacgttca taggcatccg ccagatgcgt
     7261 ctgattaaag gtttctgaat agctcagatc cagcttggtg atttgcaggt tatgtttgtg
     7321 gtcaaggcca ggaactttat tcagtacctg gatatccacg ccttcatcag gttgcagacg
     7381 gatagtcagt ttattctgcg gcagatcctg ccacgactct ttaaacagat tcagttcagg
     7441 tgttttgaaa tagaccacga cttcagaaca tttggtcggc agacgtttac cagtacgcag
     7501 gtagaatggc acaccggccc agcgccagtt atcaatgtcg acgcggatcg ccacgaaggt
     7561 ttctgtattg ctgctcttgt tcgcaccctc ttcttccaga tatcccggca cttttttgcc
     7621 ctgggcgaag cccgcagtat attgcccacg tacggttttt tcgcgtacgt tggagcggtc
     7681 gatgcggcgc agggacttca gtactttcac tttttcatcg cggatgctgt ctgcgctcag
     7741 gtcagatggc ggagacatcg caatcatgca gagaatttgt agcaggtggt tctgaatcat
     7801 gtcacgcatc tgaccggctt tatcaaaata gccccagcgc ccttcgatcc ccacttcttc
     7861 tgccacggta atctcaacat gatcaatggt gcgattgtcc cagttattca caaacaggga
     7921 gttagcaaaa cgcagcgcca acaggttcag caccgtttct ttaccaagat agtggtcgat
     7981 acggtaaacc tggcactcct cgaagtattc gccaacctga tcattgattt cctgcgaggt
     8041 cgccagcgac gtccccagcg gtttctccat gactacgcgt gccggtttag cattcagttt
     8101 tgcctcgcca agccctttgc aaattgcgcc aaaagtgctg ggcggcatgg caaagtagtt
     8161 aatggtgata cgattttttt gatccagcat cgcgccgaga cggttgaatg cagcagtgtc
     8221 attgacatcg agattacaaa aatccagacg tgcactcagg gtgtcccata aaccttcatc
     8281 aatggtttct ttcatgaaag tttcgagcgc ctcgcggaca actttggtat atgccgcttt
     8341 atcccagtca gcacgcccta cgccgataat ccgggtgtcc gggttgagct gaccggcttt
     8401 ttccagttga tacagggaag gcagcaattt acgacgcgca aggtcgcctt tcgcgccgaa
     8461 aatgaccagg tcacaggcct gggctgtttg cgttaccgcc atgtcattct ccttaagtta
     8521 actaacccgg tacttaagcc agggtatact tgtaattttc ttacggtgca ctgtactgct
     8581 tttacgagct tgcgaaaact gtaaacgctt atccacccgt gcgattacgg gaaaagcgcg
     8641 caaagcgcgg caaaactgat aaaaaaatca tcgttttcca ttcggtaaaa atctgacact
     8701 gatcatgtta tgaaaaaaaa taacaacttt tttatctgct tttgtcatta acacggcaca
     8761 caggcgtaat atctgacaaa actgcatttc gatttctttc agtgcggaaa tcgtcattac
     8821 ccgtgagtct ctttacatca tgaatatgct ggaaaaaatc cagtctcagc tggaacattt
     8881 gagcaaatca gagcgcaaag ttgccgaggt cattctggct tcgcccgata acgcgatcca
     8941 ttcgagtatt gctgctatgg cactggaagc caatgttagc gaaccgacgg tgaatcgttt
     9001 ctgtcgcagc atggacacgc gcggttttcc tgattttaaa cttcatctgg cacagagtct
     9061 ggcgaatggc actccctatg ttaatcgcaa tgtcaatgaa gatgacagcg ttgaatcata
     9121 cacagggaaa atatttgagt ccgcaatggc aacgcttgat catgtccgtc attcactgga
     9181 taaatctgcc atcaaccgcg ccgtcgactt gctcactcag gcaaaaaaaa tcgccttttt
     9241 cggattaggc tcttcagccg ccgttgccca cgatgcgatg aataagttct ttcgttttaa
     9301 tgttccggtg gtgtactccg atgatatcgt gctgcaacgc atgagttgta tgaattgtag
     9361 cgacggagac gtggtggtgc tgatttctca cactggaaga acaaaaaatc tggtcgagct
     9421 ggcgcagctg gctcgcgaaa acgacgcaat ggtgattgcc ctcacctctg cgggtacccc
     9481 gctcgcccgg gaagcaacgc tggcaattac cctcgacgta ccggaagata ctgacattta
     9541 tatgcccatg gtttctcgac ttgcacagct gaccgtgata gatgtgctgg cgacaggatt
     9601 tactttgcga cgcggtgcaa aattcagaga taacttgaag cgggtcaagg aagcgctgaa
     9661 ggaatcgcgt tttgataagc agttacttaa tttaagtgac gatcgctaaa aacgactgtc
     9721 actgtcctaa tcttatacga catccgaatg agattaattt atcgccatcg cggcgttatt
     9781 tcattcggat ttcatgttca agcaacacct ggttgtttca gtcaacggag tattacatgt
     9841 ccagaaggct tcgcagaaca aaaatcgtta ccacgttagg cccagcaaca gatcgcgata
     9901 ataatcttga aaaagttatc gcggcgggtg ccaacgttgt acgtatgaac ttttctcacg
     9961 gctcgcctga agatcacaaa atgcgcgcgg ataaagttcg tgagattgcc gcaaaactgg
    10021 ggcgtcatgt ggctattctg ggtgacctcc aggggcccaa aatccgtgta tccaccttta
    10081 aagaaggcaa agttttcctc aatattgggg ataaattcct gctcgacgcc aacctgggta
    10141 aaggtgaagg cgacaaagaa aaagtcggta tcgactacaa aggcctgcct gctgacgtcg
    10201 tgcctggtga catcctgctg ctggacgatg gtcgcgtcca gttaaaagta ctggaagttc
    10261 agggcatgaa agtgttcacc gaagtcaccg tcggtggtcc cctctccaac aataaaggta
    10321 tcaacaaact tggcggcggt ttgtcggctg aagcgctgac cgaaaaagac aaagcagaca
    10381 ttaagactgc ggcgttgatt ggcgtagatt acctggctgt ctccttccca cgctgtggcg
    10441 aagatctgaa ctatgcccgt cgcctggcac gcgatgcagg atgtgatgcg aaaattgttg
    10501 ccaaggttga acgtgcggaa gccgtttgca gccaggatgc aatggatgac atcatcctcg
    10561 cctctgacgt ggtaatggtt gcacgtggcg acctcggtgt ggaaattggc gacccggaac
    10621 tggtcggcat tcagaaagcg ttgatccgtc gtgcgcgtca gctaaaccga gcggtaatca
    10681 cggcgaccca gatgatggag tcaatgatta ctaacccgat gccgacgcgt gcagaagtca
    10741 tggacgtagc aaacgccgtt ctggatggta ctgacgctgt gatgctgtct gcagaaactg
    10801 ccgcagggca gtatccgtca gaaactgttg cagccatggc gcgcgtttgc ctgggtgcgg
    10861 aaaaaatccc gagcatcaac gtttctaaac accgtctgga cgttcagttc gacaatgtgg
    10921 aagaagctat tgccatgtca gcaatgtacg cagctaacca cctgaaaggc gttacggcga
    10981 ttattaccat gaccgaatcg ggtcgtaccg cgctgatgac ctcccgtatc agctctggtc
    11041 taccaatttt cgccatgtcg cgccatgaac gtacgctgaa cctgactgct ctctatcgtg
    11101 gcgttacgcc ggtgcacttt gatagcgcta atgacggcgt agcagctgcc agcgaagcgg
    11161 ttaatctgct gcgcgataaa ggttacttga tgtctggtga cctggtgatt gtcacccagg
    11221 gcgacgtgat gagtaccgtg ggttctacta ataccacgcg tattttaacg gtagagtaat
    11281 ctcacctgcc ccggccgctg atggccgggg tatttagcaa cacataaatt aggactactt
    11341 attcaatcca atcataatca cagccccctg taaaatgaat acagggatag cctgaatgga
    11401 gatctaaata gcttgcaaga cgtcgcatac ccgcttcctc tgcaacacta tgtccaataa
    11461 ctgccatcgg taagccacta tctttggagt attgtgtctg cacccatgtt ttaattgaat
    11521 cgttaatcgt aatataataa tcagcctgat attccatata ttgtattgga tcacaaaaac
    11581 agcctgcccc aatgccaaca gttctgacta ctct
//
LOCUS       DADMJB010000136        11405 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.136, whole genome shotgun sequence.
ACCESSION   DADMJB010000136 DADMJB010000000
VERSION     DADMJB010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11405)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11405)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11405
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.136"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..921
                     /gene="gap"
                     /locus_tag="JN078_003172"
     CDS             <1..921
                     /gene="gap"
                     /locus_tag="JN078_003172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HAY9042287.1"
                     /translation="DVVAINDLTSPKILAYLLKHDSNYGPFPWSVDFTEDSLIVDGKS
                     IAVYAEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLISAPAGEMKTI
                     VYNVNDDTLDGNDTIVSVASCTTNCLAPMAKALHDSFGIEVGTMTTIHAYTGTQSLVD
                     GPRGKDLRASRAAAENIIPHTTGAAKAIGLEIPELSGKLKGHAQRVPVKTGSVTELVS
                     ILGKKATAEEVNNALKQATTNNESFGYTDEEIVSSDIIGSHFGSVFDATQTEITAVGD
                     LQLVKTVAWYDNEYGFVTQLIRTLEKFAKL"
     gene            complement(963..2403)
                     /gene="aldA"
                     /locus_tag="JN078_003173"
                     /pseudo
     CDS             complement(963..2403)
                     /gene="aldA"
                     /locus_tag="JN078_003173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310048.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
     gene            complement(2558..3400)
                     /locus_tag="JN078_003174"
     CDS             complement(2558..3400)
                     /locus_tag="JN078_003174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001027928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HAY9042288.1"
                     /translation="MNITPFPTLSPATIDAINVIGQWLAQDDFSGEVPYQADCVILAG
                     NAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATIL
                     ADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALFNQAVERVHTAIVVQDPTMQRSTM
                     ATFRRMTGDNPDAPRWLSYPGFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPR
                     LRDDSDGYGPRGRDFIVHVDFPAEVIHAWQTLKHDAVLIEAMESRSLRQKLPVCEPLV
                     CKRA"
     gene            complement(3672..7574)
                     /gene="hrpA"
                     /locus_tag="JN078_003175"
     CDS             complement(3672..7574)
                     /gene="hrpA"
                     /locus_tag="JN078_003175"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310042.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HAY9042289.1"
                     /translation="MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQ
                     AIFQEMAKEIDQAAGKVLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGET
                     GSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRF
                     SDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLP
                     RRPDLKIIITSGTIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ
                     AIFDAVDELSQESPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNR
                     VFQSHSGRRIVLATNVAETSLTVLGIKYVIDPGTARISRYSYRTKVQRLPIEPISQAS
                     ANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAA
                     FPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLE
                     AQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWNYLG
                     EQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHI
                     ALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGR
                     IAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQI
                     DPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEF
                     YDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGN
                     LKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPV
                     RRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKIT
                     FRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYE
                     QKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEK
                     LPNKAKLGLYFNPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEKVRAELN
                     DTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFK
                     RLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVK
                     EIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG"
     gene            7775..8380
                     /gene="azoR"
                     /locus_tag="JN078_003176"
     CDS             7775..8380
                     /gene="azoR"
                     /locus_tag="JN078_003176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent NADH-azoreductase"
                     /protein_id="HAY9042290.1"
                     /translation="MSKVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLA
                     ANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNIS
                     TQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTF
                     LGFIGITDVKFVFAEGIAYGPEMAAKAQSDAKAAIDSIVAA"
     gene            complement(8431..9747)
                     /locus_tag="JN078_003177"
     CDS             complement(8431..9747)
                     /locus_tag="JN078_003177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310040.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2/dual specificity phosphatase
                     family protein"
                     /protein_id="HAY9042291.1"
                     /translation="MITERRNVLLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDI
                     PSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRLVHRLILATVMACCG
                     FLLYPLKFSFIRPEVSGVTGWPFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAER
                     WRKVCGGWFLLISISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIK
                     IALPYVVGAGSCIVLMELMVMIQLWWPVWLCWPVLSLLIIGRGYGGLGAITTGKDSQG
                     KLPPAVYWLTLPWRIGMWLSMRWFCRRLEPVSKITAGVYLGAFPRHIPAQNAVLDVTF
                     EFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSA
                     LVVAAWLLCYGHCKTVDEAISYIRARRSHIVLKEDHKAMLKLWENR"
     gene            complement(9737..11405)
                     /locus_tag="JN078_003178"
                     /pseudo
     CDS             complement(9737..11405)
                     /locus_tag="JN078_003178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415928.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional alpha/beta hydrolase/class I
                     SAM-dependent methyltransferase"
BASE COUNT         2847 a         3095 c         2709 g         2754 t
ORIGIN      
        1 gacgttgtcg ctattaatga tctcacttcc ccaaaaattc tcgcctacct gctgaaacat
       61 gattcaaact acggaccatt cccctggagc gttgatttta cggaagattc acttatcgtt
      121 gatgggaaaa gtatcgcggt ttacgccgaa aaagaggcta aaaatattcc gtggaaagcg
      181 aaaggtgcag aaatcattgt cgaatgtact ggcttttata cctccgccga gaaatcgcag
      241 gcgcatcttg atgctggtgc gaagaaggtg ttgatttccg cccctgccgg tgaaatgaaa
      301 actatcgttt ataacgtcaa tgacgacact ctggatggca acgacaccat tgtttccgtg
      361 gcgtcatgca ccactaactg tcttgcgccg atggccaaag ccttgcatga cagtttcggg
      421 atagaagtcg gcacgatgac gaccattcat gcctatactg gcacccagtc actggtggat
      481 ggcccacgtg gtaaagattt acgtgcttca cgcgcagcgg cagaaaatat cattccccac
      541 actacggggg cggcaaaagc cattggtctg gagatcccgg aactgagcgg caaactgaaa
      601 ggtcatgcgc aacgcgtgcc ggtgaaaaca ggttcggtca ctgaactggt atcgattctc
      661 ggaaaaaaag cgactgccga agaggtgaat aacgcactta aacaagcaac caccaataac
      721 gagtcatttg gttataccga tgaagaaata gtctcttccg atatcattgg cagccatttc
      781 ggttcggtgt ttgatgccac gcaaacggaa attaccgccg tgggcgattt acaactggtg
      841 aaaacggtcg cctggtacga taacgaatat ggcttcgtca cgcagcttat tcgcaccctc
      901 gaaaaattcg ctaaactctg acgcgcacag gcggaggaaa aaacctccgc ctcttttact
      961 cattacgact gtaaataaac cacctgggtc tgcagatatt catgcaggcc atgtttacca
     1021 tctgcgccgc caataccgga tttacgccat ccggcgtgga agccttgcat agcttcgaag
     1081 ttttcacggt tgatgtaagt ttcaccaaac ttcagccctt taatggcttt catcgcgacg
     1141 ttcagatttt gggtatagat ttgatgaggt caggccgtaa tcactgtcat tagccattga
     1201 gatagcctct tccagcgtgt caaatgcgac caccggcaga accgggccaa aggtttcctc
     1261 atgcataatc gacatttcct ggcgaacatc cagcagcaat gtcggcggat aataatatcc
     1321 tttcccctct accgctttgc cacccaacgc cactctcgcc ccttcttcta ctgcgcgcgc
     1381 cactttttgc tcaacccttt ccaacgccgc ggcgttaatc aacggcccca tcgcaatgtc
     1441 gttgcgttca gcggggttac caaattgaac cgcctgcatc gcttcaccca gccgattgac
     1501 gaactgatca taaatgcctt tctgtacata aacacgttct gcacagttac acacttgccc
     1561 actattaatg acgcgtgaat caacgatggc tttgactgcc agttcaagat cggcatcgtc
     1621 cattacgata gctggtgctt taccccccaa ttccagacac actttggtga tgtttttcgc
     1681 cgcagtcgcc atgatcttct cacctgcaga gacgctgcct gtcatactga ccattgcgac
     1741 ctttgggtta cccgccagtt cttgcccaac ggtttcacca cgccccagta caaggttaaa
     1801 cacgccgcgc ggaaggccta tttcatcgac gattttggcg aatgcaatcg cattgtttgg
     1861 cgtaaattca ctaggtttaa tgacgatggt attaccggtc aaaagagcgg gagccatttt
     1921 gcgggcaatg aggaagaacg ggaagttcca cggcagaatg ccggtagtca caccaagcgc
     1981 acgtttaaac aaaagaatat tttctcctgg acgatcgctt tgaataatct cgccctcgta
     2041 acgccgtgcc cactccgcca tgtaatcgat atagtcggca gtaaaagcca cttcgacttc
     2101 agccagctgc tggatcttgc ctccttcttc aacaatcagc gcactgattt cactggcgcg
     2161 ttcgcggatc ccggcggaga ttttgcgcaa ccaactggcg cgttcaatag caggcaacgc
     2221 ttcccattct ggttgtgcac gttctgctgc atcgattgcc ttacgggcat cctcggcctg
     2281 accatcgggt atgcgggaaa tgacagcctc tgtagcaggg tttaccacat caatccatgc
     2341 gtctccacgc caggtaacaa actgtccatc gatatacata ggatgttgaa cgggtactga
     2401 catgggcgac tcctgtgatt tatatgtttg ttcttggtaa atacattgtt aattaacatc
     2461 aatcatcata gagacggcat cgtgaaagga caattctgtg aagggcttca taaaaacaag
     2521 tgtaaaagga ataaaaggca gaaataaaag tcaggagtca tgcccgtttg caaacaagtg
     2581 gttcacaaac gggcaatttt tgacgtaacg agcgactttc catcgcctcg atgagcaccg
     2641 catcgtgttt aagcgtttgc catgcatgga tgacttctgc cggaaaatca acgtgaacga
     2701 taaaatctcg cccgcgggga ccgtagccat cgctatcatc gcgtaaacgc ggcagctcgc
     2761 cagtgagtag tgagagataa cgctcaaccg gccataatcc ttgtaactga ttaataaaga
     2821 ttacactgtc tgcgttattt cctaactgag gaacgaatcc gggataactt aaccagcgtg
     2881 gtgcatcggg attgtcccca gtcatacggc ggaacgtcgc catcgtgctc cgctgcatgg
     2941 tggggtcctg aacaacgata gccgtatgaa ctcgttctac ggcctgatta aatagcgcga
     3001 tgctaaagcg tgcgttttca ccgcagtttg ttgactggtc ttcaatccag attttttcat
     3061 gcggaatgtg ccagaactga tgagcgatat ccgccaggat ggtcgcttct gctctgccag
     3121 tggtgcggat agtgttgtag tgcggatgct gtgcgatggc gctatacaaa aaagttgtcg
     3181 agtgaccgat accaccacta atcagtaaag gaatttgctg atcgcgagca atcttacatg
     3241 ccgcgtcgat agtcggcata accgcattgc ctgcaaggat cacgcaatcg gcctgatacg
     3301 gcacctcacc ggagaaatca tcctgcgcca gccactgtcc gataacattt atggcatcta
     3361 tagttgccgg cgaaagcgtc ggaaacgggg taatgttcat ggttcctcct tatcgttccc
     3421 ttaagaatac tgcgtgagat aatagtgaga agctgagcac tctgaaagga ggaagtcgta
     3481 tgtccttaac cgccactccg caagcctgac atatctttta aggaaatgct gtagataaac
     3541 attattcatc ttgcagcaga gaattgtatt tttctgaatt cctgaatttt tacccttacc
     3601 gttttagaat taataaaaaa cccggcgcta aatgcttacc gggttttaga tttattaggc
     3661 aaatagcagg gttaaccgct aatctgctcc atcgcctgca aaatacgctt atctgaaatc
     3721 ggataaggcg taccaagttg ttgagcgaag taactaacgc gcagctcttc tatcatccaa
     3781 cggatctctt tcacgtcttc atcctcacga cgtgcaggcg gcagtttgtt gatccattgc
     3841 tgccacgcct gctggacgtt ttcgactttc agcatctgtg cacgatcgcg atgtggatca
     3901 accgccagtt tttccagtcg tttttcaatc gcctgcaaat atcgcagcgt gtcgcccagc
     3961 cgtttgaagc cgttaccagt gacaaaaccg cgatatacca acccgcccat ctgcgcttta
     4021 atgtcagaaa gccccagtgc catggtcata tccacccgcc ctttcagacg tttgttgata
     4081 ttgaacactg ccgtaagaat ttgctcgacc tgcttcgcaa tatctaccac cgtgtcgttc
     4141 agttcggcac gcactttctc atgcagcgca gcaaagcctt cttccgtcca gaccgggcca
     4201 ccattggcgt cgatcagttg atccacaccg caggagatac agtcgtcgat cagctccagc
     4261 actttgccat acgggttgaa gtacagtccc agcttggctt tgttcggtaa cttttcatgt
     4321 aaatacttga tcggcgaggg aatatttagc agcagtagac ggcgaagacc attccacatt
     4381 gcctgttttt gctccagcgg gttatcaaac agtttgatcg ccacgctgtc gcgttcatcc
     4441 accagcgccg gccacgcctt cactttatag ttgccacgct tctgttcgta actttccggc
     4501 agctgaccaa aactccagat atgtaagccg ctctgctcga taccgtcatc cgccaccgcg
     4561 gacagcgttt cctgcacttt gcctttcagc gcatctttca gatcttgtag cgagcgccct
     4621 tcttttagct tcttgttttt gtcatccacc acgcggaagg tgattttcag gtgatcgggc
     4681 acctgatccc agtgccagtc ttcgcggtca acggtaacgc cggtcatccg ccgtaactcg
     4741 cgctcaaggc tgtcgagcaa cggtaactcc agcggtgtga cgcggcctaa aaacgcttcg
     4801 gcgtagtttg gtgcaggcac aaaattacgg cgtaccggtt tcggcaacga tttaatcaga
     4861 gcaatcacca attcgcggcg cagaccgggg atctgccatt caaacccgct ttcctcaacc
     4921 tggttaagta acggcagcgg aatatgtacg gtcacaccgt ccgcgtctgc gcctggctca
     4981 aactgatagc tcaaacgcag cttgagattg ccctgatgcc agaagttcgg gtaatccagc
     5041 ttgctgattt tttccgcccc ttctttgatc aacatgctct tttcaaagtt gagcaaatca
     5101 ggcgtttcgc ggctgacttt tttccaccag ctatcgaagt gacgagcgga gattacatcg
     5161 tggctgatgc gctggtcgta gaactcaaac agcgtttcgt catcaaccag aatatcgcgg
     5221 cgacgtgatt tgtgttccag ctcttccact tcggcccgca gtttcaggtt ttcacggaag
     5281 aatgcgtgac gcgtctgcca gtcaccttcc accagcgcat ggcgaataaa gagttcacga
     5341 cataacgccg gatcgatctg gctgtagttg accttgcgcg cggcaacaat cggcaaacca
     5401 taaacagtga ctttttccgt tgccatcacc gcgccctgcg cccgttccca gtgcggttcg
     5461 ctgtaggtac gtttaatcaa atgctgagcg acaggctcca cccattccgg gtcgatacgc
     5521 gcagcaatgc gcccccacag gcggctggtt tctaccagtt ccgccaccat tacccatttc
     5581 ggcggttttt tgaataaacc agaaccgggg aagatggaga aacgcgcgtt acgtgcgccg
     5641 gtatattctt gtttatcggc atctttcatg ccgatatggg aaagtaaacc cgtcagcaac
     5701 gcaatgtgaa tttcgcgata ctccgccggt tcgctgttaa ccggaatgcc aagttctttc
     5761 accacctgac gcaactgggt gtagatatcc tgccattcgc gcacgcgcag atagttgaga
     5821 taatcggtac gacacaggcg acggaaggcg tttgaagaaa gcgccttttg ctgctcgcca
     5881 agataattcc acagatttac aaacgcgagg aagtcggatt ctttgtcgtg gaagcgacga
     5941 tgtttttcgt ccgatgcctg ctgtttgtcc atcggccgct cacgcgggtc ctgaatggag
     6001 agcgcggacg tgataatcat cgcctcacgc acgcagccat gtttctgcgc ttccagcacc
     6061 atacgcgcca gacgaggatc gaccggcagt tgcgagagct ggcgaccgag cggcgtcagt
     6121 ttataggcgc tggcctgttc atccgtggtg atcgcgccca gttcttcgag cagacgcacg
     6181 ccatcctgga tattgcgttt atccggtgct tcgacaaacg ggaacgcagc gatatcgccc
     6241 agccccagcg cggtcatctg caaaataacc gaggccaggt tggtacgcag aatctccgga
     6301 tcggtaaact ccgggcgcga gaggaaatcg tcttcggaat agagacgaat acagatccct
     6361 tcggacacac gaccacaacg gcctttacgc tgattggcag acgcctgtga aatgggttca
     6421 atcggcaaac gctgcacttt ggtgcgatag ctgtagcggc tgatacgcgc cgtaccgggg
     6481 tcgataacgt atttaatccc cagtacagtc agcgaggttt ccgcgacgtt ggtcgccagc
     6541 acaatgcgtc gcccgctgtg cgactggaac acgcggttct gttcgctatt cgaaagccgc
     6601 gcataaagcg gcaagatttc ggtatggcgt aagttcagct tgttcagcgc atcggcggta
     6661 tcgcgaattt cccgctcgcc gctcataaag atcagaatgt cgccagggct ttcctggctc
     6721 agttcgtcta cggcgtcaaa aatcgcctgc aactgatcgc gctcggtgtc atcggcttct
     6781 tcaacaatcg ggcgatagcg cacttccacc ggataggtcc gaccggagac ttcgataatc
     6841 ggcgcattat taaagtggcg agaaaagcgt tccgggtcga tagtcccgga agtgataatg
     6901 atttttaggt caggacgccg cggcagcaac tctttcaaat agccgagcag aaaatcgata
     6961 ttcaggctgc gttcgtgtgc ttcgtcaata atgatggtgt cgtactgcat cagcaggcgg
     7021 tcttgctgga tctccgccag caggataccg tcggtcatca gcttgaccat cgtgttatca
     7081 cttacgtgat cgctgaaacg cactttgtaa ccgatgcaac cgcctggctc cgttttcagc
     7141 tcttccgcaa tacggttcgc caccgttctt gccgccagac gacgcggctg ggtatggccg
     7201 atcagtcctt taatcccgcg ccccagctcc atacagattt tcggtagctg ggtcgtttta
     7261 ccggaaccgg tttccccggc gacgatcacc acctggtgat cacgaatcgc ttcgagaata
     7321 tcctgttttt tctgactaac tggcaaattg tccggataag tgatttccgg tcgtgccgct
     7381 tcacgcagca ggactttccc tgccgcctgg tcaatctctt tcgccatctc ctggaaaatg
     7441 gcctgttgtg catcaggatt tttaaccttc ttaacaccat gcagacggcg agaaaaacgc
     7501 agtctgtcgc gcagcatcaa cgaatccagc cgctgctgca aagcagtaaa ggtcaatttt
     7561 tgttgttctg tcataacgtt agtgggcagt agtctgcctg attaattttc ttttaaatga
     7621 tagatataga gtaccacatc gcggctttct atgcgttgtt caataaattc gaacataggc
     7681 ttcgatttat tgcgctatct ctgtggcagg attgtgaata aagtgtcagc aagcaacggg
     7741 gcatcgccaa ttcaaacatc tataaggaaa caccatgagc aaggtattag ttcttaaatc
     7801 cagcatcctg gcagggtact ctcagtctaa tcagttgtcc gattattttg ttgaacaatg
     7861 gcgcgaaaag cactccgctg atgaaatcac cgttcgcgac ctagctgcaa atccgattcc
     7921 ggtactggat ggcgaactgg ttggcgctct gcgtccgagc gatgcgccgc tgactccgcg
     7981 tcagcaggaa gctctggcgc tttccgatga gctgattgcc gagctgaaag cccacgacgt
     8041 tatcgttatt gcggcaccga tgtataactt caacatctca actcagttga aaaactattt
     8101 tgacctggtt gcacgcgcag gcgttacttt ccgctatacc gagaacggtc cggaaggtct
     8161 ggtaacgggt aaaaaagcca tcgttattac cagccgcggt gggatccaca aagatggacc
     8221 aacggaccta gtgacgccgt atctgtccac gttcctcggc tttatcggca ttaccgatgt
     8281 gaaatttgtc ttcgccgaag ggatcgcata cggtccggaa atggcagcga aagcgcagtc
     8341 tgacgcgaaa gcggccatcg acagcattgt tgctgcataa ccggacacga tcttgatgtg
     8401 gactgtagtt cagtccacat ctcaatccac ttacctgttt tcccataatt tcagcatcgc
     8461 tttgtgatct tccttaagca caatatgcga acgtctggct cgaatataac taatcgcttc
     8521 atcaacggtt ttacagtgtc cgtaacataa caaccatgcc gccactacca gcgcactgcg
     8581 cgataatccc aacgcgcaat ggaccagaac gctgccttgc tcttcgcgta atgtttccag
     8641 catcgccacg gcctgtcgga gctccccctc ttccggaacc accagatcca gcatcggtac
     8701 acagaaatag agtcgatctt ttgtcgctcg tccccgaggg aattcaaagg tgacgtccag
     8761 aaccgcattc tgtgccggaa tatgtcgtgg aaacgcccct aaataaacac cagcagtaat
     8821 tttgctcacc ggctccaggc gacgacaaaa ccaacgcata gacagccaca tcccgatgcg
     8881 ccagggcaat gtcagccagt aaacggcggg cgggagtttc ccctgactat ctttccctgt
     8941 tgttatcgcg ccaagcccac cgtacccacg gccaataatg agtagcgata atactggcca
     9001 acataaccag actggccacc ataactgaat catcaccatt agctccatca acacaatgca
     9061 cgagcccgcg cctacgacat atggcagtgc tattttgatt cgacgttgat caggtttctg
     9121 ataattccaa cgacgatcga cgggcaccat ccagtcaatc aacataccta ccgccagccc
     9181 tgtgatgaca tcaataaaat gatgctgcca ggtcgtcaga gtagaaatag agatgagtaa
     9241 aaaccatccg ccacagactt tacgccacct ctcagccaga tgctgacgaa agtgacgcca
     9301 aagtagccag cagagaataa tatgcagcga aggagactgg ttataaggca gatcaaacag
     9361 ttcaagttgc gaaaatggcc atcccgtcac cccactcact tcaggacgga taaaactaaa
     9421 cttcagcgga tagagcaaaa aaccgcagca ggccattacc gttgccagaa taagccggtg
     9481 gacaagtcgg cgctgttcga atgtcgtgct acaaacgaac agcgaaaatc catataaaag
     9541 atccagactc cagtaaggaa caatagtcca gggaagaaaa gggatcgccg tttcccaacc
     9601 gaatacctga ctggggatat catggctgtt aaggtcctga accgcggtga actgattaag
     9661 agatccatag gtgaagaaaa aaaacggggc cagcaacaat aaccagccag cgccttgtag
     9721 caatacgttc cgacgttcag ttatcacgac gcaccgccat cgaaaccgta aaaatacccc
     9781 actcatcaat ccgttgtgtg catttatcaa atccggcatc acgcacgagt gaatccatct
     9841 ccccttgcga acgcacgcgc attacccacg gtttaccatc tttatgactg gttaacaccc
     9901 cggcaatcat ctccagttga gggtgccacg gctgcccggt gtagatgaga atgccgaccg
     9961 gttcgatggc attggcaaga cctgcgagtg agttttttac ctgctcattt tcgggaaaaa
    10021 gctcatacag tccagagaca attgccagcg taggccgcgg agttaacgcg ctgagttcct
    10081 ccgggttaaa cgcatcgccc tgttcaaaac gcacccgccc agacattccc cgttgggcaa
    10141 tcatctcttg cccctgtgca acatttaact cgctgtaatc acgtaacaaa atatcgctta
    10201 cggcaggctc gtttgccagc gcatccagta catagcgccc atgccctgcg gcaatgtcaa
    10261 ccacgcggac ggctaaacct ttggcgtgga gatcggcaac ggcttgttta atcagtattt
    10321 gtaaatgggt tttgcgctgg cgaataccgc gccagccaac actgttcagg tagattttgt
    10381 cgattaagcg cccgaatgcg ttactacctt gcggttgatt ttgatagaca taatccagcg
    10441 aactgcctga atcaaagccg gtgctcattc cgagatgcag gcccgcagag tgcgtcccga
    10501 acaatttcat cgcctttcgc ataaagcgat acgctaaatc aaccggcgat aatagcacgg
    10561 gtccaccaga aagtagccgc cattgatccg ctgatggtcc tgtgcagtct tcatgctgat
    10621 aatcaaattt ttgcgatttg ttagcatata aacgactaat aaagctttgc attttttcaa
    10681 atgccagcgc cctgttctct tcacccaacg tgtcgtgata aaagcctggc agcagatgca
    10741 gctctttcag agggctacgt aatctctgat aaaaatcaat ctgcggttgg cgatgcacca
    10801 catagtcatc acctgatatc agaagttgcg tggggagcgt aatcgccgcc gcatctctaa
    10861 taatacgttc agacgtttta tagagatcga gcaagatatt gacggcaatc gcccgtgtga
    10921 tcagcggatc attattgaaa ctcgccaccc gttgccgatc gtgggtcaaa tagcgtcctt
    10981 tcacatagga attaataaaa aacagaccac gcagacgatg ccataacgcc agcgcaggac
    11041 gtgccagcgg cacatacaat ttaaccttaa aggccggaga agccagcacc agcccgcgaa
    11101 ttgcaggcgc ataatcatga acctatgtgg caaccagcac tgcgccgacg ctttgcgcga
    11161 tcacaaccac ctcttccagt ccaacctagc tgtcgctggc agcaaaacgg acaaattcat
    11221 cgacatcctg cactgaacgc gcaagagatg ggctataacc acgcggcccc gaagtttttc
    11281 catgcccccg agcatcccat gcataaaaag cagtatctgg catcgccagt tcatcaacga
    11341 tatgttgtag acgaccagaa tgttcatggc cacgatgaaa taagacaatg acctttttcg
    11401 cccct
//
LOCUS       DADMJB010000137        11330 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.137, whole genome shotgun sequence.
ACCESSION   DADMJB010000137 DADMJB010000000
VERSION     DADMJB010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11330
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.137"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            86..523
                     /locus_tag="JN078_003179"
     CDS             86..523
                     /locus_tag="JN078_003179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001524956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HAY9042292.1"
                     /translation="MKTIKPESIALFCLLSGDVDLAKHLADILPITCFVGEDWQQDFQ
                     PLDGGPVQSLSDSYSDYSVLLLIAAESEISVPEWLAHSEGTTVILIAEHNARLLTGPA
                     GGAVALIHYLNEICHSRETAVNDAFCRTLTRGSLAIPQCHLLS"
     gene            657..1201
                     /gene="cobU"
                     /locus_tag="JN078_003180"
                     /pseudo
     CDS             657..1201
                     /gene="cobU"
                     /locus_tag="JN078_003180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416497.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adenosylcobinamide
                     kinase/adenosylcobinamide-phosphate guanylyltransferase"
     gene            1198..1941
                     /gene="cobS"
                     /locus_tag="JN078_003181"
     CDS             1198..1941
                     /gene="cobS"
                     /locus_tag="JN078_003181"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HAY9042293.1"
                     /translation="MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLL
                     GAISGLVFMVLQAWCGVPLAALFSVLVLALMTGGFHLDGLADTCDGVFSARSRDRMLE
                     IMRDSRLGTHGGLALIFVVLAKILVLSELALRGEPILALLAAACAVSRGTAALLMYRH
                     RYAREEGLGNVFIGKIDGRQTCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQL
                     LKRTLGGQTGDTLGAAIELGELVFLLALL"
     gene            1953..3032
                     /gene="cobT"
                     /locus_tag="JN078_003182"
     CDS             1953..3032
                     /gene="cobT"
                     /locus_tag="JN078_003182"
                     /EC_number="2.4.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide--dimethylbenzimidazole
                     phosphoribosyltransferase"
                     /protein_id="HAY9042294.1"
                     /translation="MQTLADLLNTIPAIDPAAMSRAQRHIDGLLKPVGSLGRLEALAI
                     QLAGMPGLNGVPHVGKKAVLVMCADHGVWEEGGAISPKEVTAIQAENMTRGTTGVCVL
                     AAQAGANVYVIDVGIDTAEPIPGLINMRVARGSGNIASAPAMSRHQAEKLLLDVICYT
                     RELAKNGVTLFGVGELGMANTTPAAAIVSTITGRAPEEVVGIGANLPTDKLANKIDVV
                     RRAITLNQPNPQDGVDVLAKVGGFDLVGMAGVMLGAASCGLPVLLDGFLSYAAALAAC
                     QMSPAIKPYLIPSHLSAEKGARIALSHLGLEPYLNMEMRLGEGSGAALAMPIIEAACA
                     IYNNMGELAASNIVLPGNTTSDLNS"
     gene            3094..4029
                     /gene="ldtA"
                     /locus_tag="JN078_003183"
     CDS             3094..4029
                     /gene="ldtA"
                     /locus_tag="JN078_003183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310812.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HAY9042295.1"
                     /translation="MMRRVNIFCSFALLFASHTSLAVTYPLPPEGSRLVGQSYTVTVP
                     DHNTQPLETFAAQNGQGLSNMLEANPGADVFLPKSGSQLTIPQQLILPATVRKGIVVN
                     VAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRREYA
                     KRGESLPAFVPAGPDNPMGLYAIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKY
                     LFDNVPVGTRVQIIDQPVKYTTEPDGSNWLEVHEPLSRNRAEYEFDRKVPLPVTPSLR
                     AFISGQEVDVNRANAALQRRSGMPVPISSGSRQMF"
     gene            complement(4085..4160)
                     /locus_tag="JN078_003184"
     tRNA            complement(4085..4160)
                     /locus_tag="JN078_003184"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4125..4127),aa:Asn,seq:gtt)
     gene            4487..4858
                     /locus_tag="JN078_003185"
                     /pseudo
     CDS             4487..4858
                     /locus_tag="JN078_003185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416493.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            4857..5291
                     /locus_tag="JN078_003186"
                     /pseudo
     CDS             4857..5291
                     /locus_tag="JN078_003186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310806.1"
                     /note="Catalyzes the hydrolysis of AMP to form adenine and
                     ribose 5-phosphate using water as the nucleophile;
                     incomplete; partial in the middle of a contig; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AMP nucleosidase"
     gene            5634..6350
                     /locus_tag="JN078_003187"
     CDS             5634..6350
                     /locus_tag="JN078_003187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HAY9042296.1"
                     /translation="MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELN
                     TSLKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSN
                     VNRTIANVRTIFNKKGGNIGAAGSVSYMFDNTGVIVFKGSDPDHIFEILLEAEVDVRD
                     VTEEEGNIVIYTEPTDLHKGIAALKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGL
                     VDALEDDDDVQKVYHNVANL"
     gene            complement(6806..6881)
                     /locus_tag="JN078_003188"
     tRNA            complement(6806..6881)
                     /locus_tag="JN078_003188"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6846..6848),aa:Asn,seq:gtt)
     gene            complement(6982..8625)
                     /gene="yeeO"
                     /locus_tag="JN078_003189"
     CDS             complement(6982..8625)
                     /gene="yeeO"
                     /locus_tag="JN078_003189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416491.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxic metabolite efflux MATE transporter YeeO"
                     /protein_id="HAY9042297.1"
                     /translation="MLRHILTAKNLLSNPIFKFPNCLPFLSTVCCICRQFVGENLCSF
                     ADSPSLFEMWFHFLQLRSALNISSALRQVVHGTRWHAKRKSYKVLFWREITPLAVPIF
                     MENACVLLMGVLSTFLVSWLGKDAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLG
                     KRDRRRARVATRQSLVIMTLFAVLLATLIHHFGEQIIDFVAGDATTEVKVLALTYLEL
                     TVLSYPAAAITLIGSGALRGAGNTKIPLLINGSLNILNIIISGILIYGLFSWPGLGFV
                     GAGLGLTISRYIGAVAILWVLAIGFNPALRISLKSYFKPLNFSIIWEVMGIGIPASVE
                     SVLFTSGRLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGSALGSASTIITGRRLGVG
                     QIAQAEIQLRHVFWLSTLGLTAIAWLTAPFAGVMASFYTQDPQVKHVVVILIWLNALF
                     MPIWSASWGLPAGFKGARDARYAMWVSMLSMWGCRVVVGYVLGIMLGWGVVGVWMGMF
                     ADWAVRAVLFYWRMVTGRWLWKYPRSEPQKCEKKPVVSE"
     gene            8630..8705
                     /locus_tag="JN078_003190"
     tRNA            8630..8705
                     /locus_tag="JN078_003190"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8663..8665,aa:Asn,seq:gtt)
     gene            8867..10129
                     /locus_tag="JN078_003191"
     CDS             8867..10129
                     /locus_tag="JN078_003191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000055676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HAY9042298.1"
                     /translation="MSLNDSKIRNLKPSSKPVKLSDSHGLYLLVNQGGSRIWYLKYRF
                     SGKESRVSLGAYPLVSLAEARQRRDDIRKLLTQNINPAHQRMSDKAAASPEKYFKAVA
                     LAWHKTNKKWSPDYAARILASMENHIFPAIGHLPVTTLKTQNFTALLRVIEDKGFLEV
                     ASRTRQQLCNIMRYAVQQGFTENNLAQHLEGVTAPPVKNHYPALPLERLPELFERIGD
                     YQQGRQLTRLAVVLTLHLFIRSSELRFARWGEIDFRNKIWTIPATREAIEKVRFSGRG
                     AKMRTPYIVPLSRQAIAILKQIKEISGHLELVFPGDHNPYKPMSENTVNRALRLMGYD
                     TKTDVCGHGFRTMACSALVETELWSRDTVERQMSHQERNSVRAAYIHRAEHLDARTAM
                     MQWWSDYLDVSREGYVAPYIYARRHKAA"
     gene            complement(10848..>11330)
                     /locus_tag="JN078_003192"
     CDS             complement(10848..>11330)
                     /locus_tag="JN078_003192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000511771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HAY9042299.1"
                     /translation="MAAALELSRLMGLRSQEVVQSAQSLRTWKQSLERGEPRLTVVFG
                     TKGGRPRETVILDAVAIRKALDNALVVAEDRHGRLIDKPDLKSAMKYWHSQASRLGLT
                     GTYSPHSLRYAWAQDAIRHYLAQGFSEKEALAMTAMDLGHGDGRGRYVAQVYGRKDTD
                     "
BASE COUNT         3010 a         2646 c         2760 g         2914 t
ORIGIN      
        1 gggctgcatt caaggtgtgg caatattgtt tcatggctta tcaaccagag cgccattaca
       61 ggaaattaag tggagggcga gaggcatgaa aacgataaaa cccgaatcga tagctctttt
      121 ttgcctctta tctggagatg tggatctggc gaaacatctg gctgatatat tgccaataac
      181 ctgttttgtt ggtgaggact ggcagcaaga tttccagcct cttgatggtg ggcctgtgca
      241 atcgttatca gattcgtata gcgattattc agtgctgcta ttgatagcag ctgaaagcga
      301 gatatccgta ccagaatggc tcgctcattc tgagggaacg acggtaattt tgattgcaga
      361 acacaatgcc cgtttgctga ctggtccggc tggtggggct gtagcattaa tccattatct
      421 gaatgaaatc tgtcattcca gagaaaccgc tgtcaatgac gcattttgtc ggacgttaac
      481 acgaggaagt ctggctattc cgcaatgcca tcttctttcg taatggattg agaatgctgg
      541 atttttaatt atattacgcg cagtattaat cgcgtaaatg ttttgcggtc agcaacggtg
      601 ggggatccat tgttctgttc aatgaatacc atcatacaat tgaatcagga gtcggtatga
      661 tgatttcggt gacggggggc gtacggagcg ggaagagtcg ccacgcagag gcgcttattg
      721 gggactcttc acaggttctg tatacgccac ctcgcaaatc cttgatgatg agatggctgc
      781 acggatagaa catcatcggc aaggccgccc gacgcactgg cacacagtgg agcgctggca
      841 acatcttgat gaattaattc atgcagacat taacccgcat gaggctgtat tgctggaatg
      901 cgttaccacc atggtgacta atctgttgtt tgattatggc ggcgataaag accctgatga
      961 atgggattat caggcgatgg aacaggcgat taatgctgag attcagtcgt tgattgctgc
     1021 ctgccaacgt tgtcccgcaa aggttgtatt agtgactaac gaagtgggaa tggggattgt
     1081 gccggagagt cgtctggcac gacattttcg tgatattgcc gggcgggtaa atcagcagct
     1141 ggccgctgcg gcaaatgaag tatggttggt ggtttcgggt attggagtaa aaatcaaatg
     1201 agtaaattat tttgggcgat gctctctttt attacgcgtc tgcctgtacc gcgtcgctgg
     1261 tcccagggac tggatttcga gcattattct cgcggtatta ttacttttcc tttaattgga
     1321 ttattgcttg gcgcgattag cgggctggtc ttcatggtgc tgcaggcatg gtgtggcgta
     1381 ccactggcgg cactgtttag cgtacttgtg ctggcgctga tgaccggggg attccacctg
     1441 gacggcctcg ccgatacctg tgatggcgta ttttctgcac gtagccgcga tcgcatgttg
     1501 gaaatcatgc gtgatagccg tttaggcacc cacggcggtc tggcattgat ttttgttgta
     1561 ctggcaaaga ttctggtatt aagcgagttg gctctgcgtg gcgaaccgat ccttgcattg
     1621 ctggcggcag catgtgcggt cagccgcggg actgccgcat tattgatgta tcgtcatcgt
     1681 tatgcccggg aagaaggact tggcaatgtg ttcattggca aaattgatgg gcgacaaacc
     1741 tgcgtcacac tcggcttagc cgctattttt gctgccgtat tattgccggg tatgcatggt
     1801 gtggctgcta tggtggtgac gatggtggcg attttcatcc tcggtcagct tctcaaacgt
     1861 acgctgggcg ggcaaaccgg cgatacgctg ggagctgcta tagagcttgg tgaactggtc
     1921 ttcctgctgg cactgctata aagagacgtg acattcaaac acttgccgat ttactgaata
     1981 cgatccctgc tatcgatcct gccgctatgt cgcgtgcaca acggcatatc gacgggttac
     2041 tcaaacctgt tggtagcctg ggaaggctgg aggcgcttgc catacaactg gcaggaatgc
     2101 cggggttgaa tggcgttccg catgtgggca aaaaagcggt actggtcatg tgtgccgatc
     2161 acggcgtctg ggaggaaggg ggcgctattt ccccaaaaga agtgacagcc attcaggctg
     2221 aaaatatgac ccgcggaaca accggcgtgt gtgtgctggc agcacaagcg ggcgctaacg
     2281 tctacgtaat tgatgttggt attgatactg ctgagcctat ccccgggctt atcaacatgc
     2341 gtgttgctcg aggtagtggc aatattgctt cagctccggc aatgagtcgc catcaggcag
     2401 aaaagttgct tttggacgtc atatgttata cgcgggagct ggcaaaaaac ggtgttacgc
     2461 tgtttggtgt aggtgaactg gggatggcaa acacgacacc ggcagcggca atagtcagca
     2521 caatcactgg ccgggctcct gaagaagtgg ttgggattgg cgcaaacctg ccgacagata
     2581 aactggctaa taaaattgat gttgtgcgcc gggcgattac gttgaatcaa ccaaatccgc
     2641 aggatggcgt tgatgtcctg gcaaaagtgg gtggatttga tttggtcgga atggctggcg
     2701 tgatgttagg cgctgcgtcc tgcggtttac ccgtgttgct ggatggattt ctttcttatg
     2761 ctgctgcgct cgcagcctgt cagatgtctc ctgcaatcaa accgtatctc attccttctc
     2821 acctgtcggc agaaaaagga gcgcgtatag cgctgtcgca tttggggctg gagccttatc
     2881 tcaatatgga gatgcgttta ggtgagggga gtggcgcagc tctggcgatg cccatcatcg
     2941 aagctgcctg tgcgatatat aacaacatgg gcgaacttgc tgccagtaat attgttctac
     3001 cggggaatac gacttctgat ttgaacagtt aaaaacgaaa agtctgataa aagctatact
     3061 taacggatag ctttcgcgac ttaggaaagg gacatgatgc gtcgtgtaaa tattttttgc
     3121 tcatttgctc tgctttttgc cagccatact agcctggcgg taacttaccc attacctcca
     3181 gagggtagcc gtttagtggg gcagtcgtat actgtaactg ttcctgatca caatacccag
     3241 ccgctggaga cttttgccgc acaaaacggg caagggttaa gtaacatgct ggaagcgaac
     3301 ccgggtgctg atgttttctt gccgaagtcc ggctcgcaac tcaccattcc gcagcaactg
     3361 attttgcccg ccactgttcg taaagggatt gtggttaacg tcgctgagat gcgtctttat
     3421 tactacccac cagacagtaa tactgtggaa gtctttccta ttggtatcgg ccaggctggg
     3481 cgagaaaccc cgcgtaactg ggtgactacc gttgaacgta aacaagaagc tccaacctgg
     3541 acgccaacgc cgaacactcg gcgcgaatat gcgaaacgag gggagagttt gcccgcattt
     3601 gttcctgcgg gccccgataa tcccatgggg ctgtacgcga tttatattgg caggttgtat
     3661 gccatccatg gtaccaatgc caattttggt attgggctcc gggtaagtca gggctgtatt
     3721 cgtctgcgca atgacgatat caaatatctg tttgataatg ttcctgttgg gacgcgtgtg
     3781 caaattatcg accagccagt aaaatacacc actgaaccag atggctcgaa ctggctggaa
     3841 gttcatgagc cgttgtcgcg caatcgtgca gaatatgagt ttgaccgaaa agtgccattg
     3901 ccggtaaccc catctttgcg ggcgtttatc agcgggcaag aagttgatgt aaatcgcgca
     3961 aatgctgcgt tgcaacgtcg atcgggaatg cctgtgccaa ttagttctgg ttcaagacag
     4021 atgttttaag agcgttggta attagaaagc aaaaagcctg ctagaaagca ggcttttttg
     4081 aatttggctc ctctgactgg actcgaacca gtgacatacg gattaacagt ccgccgttct
     4141 accgactgaa ctacagagga atcgtgtgaa cggggcgcat attaatggca gtgcatggtg
     4201 atgtcaaagg gtgaaatgca tttttttgtt tgtttgctgt caatttcaac aaagtggtga
     4261 gctttcaatc ttattgggta atgaaccatc gtggtgcata ccctcctttt atagggcagg
     4321 ggaacgcgac agctgattaa aggagcaaat gacgaatcta tcataatctc ttatttgaca
     4381 gttggttagc ttgtacatca acgccaaaat aaaactggca agcatcttgc aatctggttg
     4441 taagtaatgg cggcacttgg gccgattctt aaaaaccgga ggcaacatga acttcagacg
     4501 cctgaaatac ttcgtaaaaa ttgtagatat tggtagcctg acccaggctg ctgaagtatt
     4561 gcatatcgca caaccagcgc tcagccagca ggttgccaca ctggaaggtg agttaaatca
     4621 acaacttttg atccgtacaa agcggggcgt tacgccaaca gacgccggaa aaattctcta
     4681 tacccatgcg cgggccattt tacgtcagtg tgaacaggcc caactggcgg tgcataacgt
     4741 tggtcaggca ttatcggggc aagtctcgat tggctttgca ccaggaaccg ctgcgtcatc
     4801 catcaccatg cccttattac aggcggttcg cgctgaattt ccggagatcg ttatctatcc
     4861 cgagcattgc tgaagtgcaa cgtgcgcttt atgacgccac caagctggtg agcggcaggc
     4921 ccggtgagga agtcaaacag cggctacgta ctggtactgt ggtaaccaca gatgacagga
     4981 actgggaatt acgttactca gcttctgcac ttcgttttaa cttaagccgg gccgtagcaa
     5041 ttgatatgga aagtgcaacc attgccgcgc aaggatatcg tttccgcgtg ccatacggga
     5101 cactactgtg tgtttcagat aaaccgttgc atggcgagat taaacttccc ggccaggcta
     5161 accgttttta tgaaggcgct atttccgaac atctgcaaat tggcattcgg gcgatcgatt
     5221 tgctgcgcgc agaaggcgac cgactgcatt cgcgtaaatt acgaaccttt aatgagccgc
     5281 cgttccgata ataagttctg aaccttctta tcagaaatag atgtgaagga gtaagtaaga
     5341 cacctggcaa atagcctgca ataatcgtgg gctgtttgct tccttgggcg gatacgtgtt
     5401 ttattatcgt cttaatgatt tccacatatt aaaagcaagt atgctttcaa aacacaatta
     5461 taaaaaatcc cgccaacaat ataagttttt ataaaattaa atataagatt atggctttag
     5521 aatattttta tttctaatag acgagatttt tcctgttatg atataatatg ccgaattaac
     5581 acatgttaac gatttaccag taatgtaaat aaattttcga ggagatcatt ccagtgggac
     5641 gtaaatgggc caatattgtt gctaaaaaaa cggctaaaga cggtgcaacg tctaaaattt
     5701 atgcaaaatt cggtgtagaa atctatgctg ctgctaaaca aggtgaaccc gatccagaat
     5761 taaacacatc tttaaaattc gttattgaac gtgcaaagca ggcacaagtt ccaaagcacg
     5821 ttattgataa agcaattgat aaagccaaag gcggcggaga tgaaacgttc gtgcagggac
     5881 gttatgaagg ctttggtcct aatggctcaa tgattatcgc cgagacattg acttcaaatg
     5941 ttaaccgtac gattgctaac gttcgcacaa ttttcaataa aaaaggcggc aatatcggag
     6001 cggcaggttc tgtcagctat atgtttgaca atactggtgt gattgtattt aaaggatcag
     6061 accctgacca tatttttgaa attttacttg aagctgaagt tgatgttcgt gatgtgactg
     6121 aagaagaagg taacattgtt atttataccg aacctactga ccttcataaa ggaatcgcgg
     6181 ctctaaaagc agctggaatc actgagttct caacaacaga attagaaatg attgctcaat
     6241 ctgaagttga gctttcccca gaagatttag aaatctttga agggcttgtt gatgcccttg
     6301 aagatgacga cgatgtacaa aaagtttatc ataacgtcgc aaatctctaa ttatatatta
     6361 aagaaatctg tctttatggc agatttcttt aatctcatat aatccttata aaaaatataa
     6421 tgttcaactc gtcatattgc ttataaaaaa tcctcgttcc cagagaaata atatttatta
     6481 taattccagt tcttcttttt ctgattacag aaggcaaagt gacaattacg catagtttcc
     6541 cgataaagac gcgacagcta catcccgcat aaggcatttt tctctttatc cttgtacggt
     6601 acttcatgga acagagtttt tgaccttgcg aatcgtgatg tctgttgggg aggggcaatt
     6661 tgctcactga agcgtgagac tcgattaagc gcacgaaaca cagaaatcaa aaaacccggg
     6721 cactttttta caaggtaacc gggtaaaaat aatttttatt ttttaactgt tttgagactc
     6781 atagagatgt ctcaaaacta aaatttggct cctctgactg gacttgaacc agtgacatac
     6841 ggattaacag tccgccgttc taccgactga actacagagg aatcgtgaga acgaggcgaa
     6901 tattagcgat gcccacccac aatgtcaaag cctgttattt aaatttgaaa tcgtttgctg
     6961 aaataatctg cattttgtcg tttattccga cacaactggc tttttttcac acttttgcgg
     7021 ttcggatcga gggtatttcc acagccaacg tccagtaacc attcgccagt aaaacagcac
     7081 ggcccgcaca gcccagtcgg caaacattcc catccagaca ccaaccacac cccagccaag
     7141 catgatgccc agcacataac cgacgacaac ccggcaaccc cacatgctca acatagaaac
     7201 ccacatggcg taacgggcat cgcgagcacc tttaaatcca gcgggtagcc cccatgaggc
     7261 ggaccaaata ggcataaata aagcatttag ccaaatcaga atcacaacga catgtttaac
     7321 ctgtggatcc tgggtgtaaa acgatgccat aaccccggca aagggagccg ttagccaggc
     7381 gatggccgtt aatccaagag tggaaagcca gaacacatgc cgcaactgaa tctctgcttg
     7441 cgctatctgc cctaccccca accttcggcc tgtaatgatc gtagaagcag agccgagcgc
     7501 acttccgggt aagttgataa gagccgcaat tgaaaacgcg ataaaatttc cggcaataac
     7561 actggtcccc atcccggcaa cgaacatttg ggttaataac cgaccactgg taaataacac
     7621 tgattcgaca ctcgcgggaa taccaatccc catgacttcc cagataatgc taaaattcag
     7681 cggtttaaaa tagctcttta acgaaatcct tagcgcagga ttaaaaccaa tcgccagcac
     7741 ccacaaaatt gcaactgcgc caatataacg agaaatggtt aaacccagcc ctgccccgac
     7801 aaatcccagt cccggccagg agaaaaggcc gtaaatcaat atgccgctaa taataatatt
     7861 aagaatattc aggctaccgt taatcaatag cggtattttc gtattccctg caccacgaag
     7921 tgccccgcta ccaataagag tgatggcagc tgctggataa ctgagtaccg tcagctccag
     7981 ataagtcaac gccagtactt taacttctgt cgtggcatca cccgcgacga aatcaataat
     8041 ttgttcgcca aaatgatgaa taagcgttgc caacagtacg gcaaacaacg tcatgatcac
     8101 caatgactgc cgcgtcgcca ccctcgctcg tcgtcgatcc cgcttaccga gactaaatgc
     8161 cacaacgaca gtagtaccaa gatcgatagc agcaaaaaaa gccataatga ccatattgaa
     8221 gctgtccgcc aatcccacgc cggccatcgc atcttttccc agccagctga ccagaaaagt
     8281 gctcagaacc cccatcaaca ggacacaggc attctccatg aagataggaa cagcaagcgg
     8341 ggttatctcg cgccagaaca acactttgta gctcttgcgt ttagcgtgcc agcgagtgcc
     8401 gtgaacaacc tggcgtaaag cagaggagat attcaaagcc gaccttaatt gcagaaagtg
     8461 aaaccacatt tcaaataatg agggagaatc agcaaagctg caaagatttt cgccaacaaa
     8521 ttgtctgcaa atgcaacaaa ctgttgatag aaacggcaaa cagttgggga atttaaaaat
     8581 cgggtttgac aaaagatttt tcgccgttaa gatgtgcctc aacagcgatt cctctgtagt
     8641 tcagtcggta gaacggcgga ctgttaatcc gtatgtcact ggttcgagtc cagtcagagg
     8701 agccaaattc cgattcttac gctatcttat tagtccttat ttgatattga ttcaataagt
     8761 tagcgtgaaa atctttccag atgtgtattc agttttccct ccgcatccgg ttaatttggt
     8821 ggtcagattt gggggcaggt tggttcgatt ctggagtgac ccccaaatgt ctttaaacga
     8881 ttcaaaaatc cgtaacttaa aaccctcttc aaaacccgta aaactgtctg attcgcacgg
     8941 tctgtatctg ctggtcaatc agggcggttc gcgtatctgg tatctcaagt atcgcttcag
     9001 tggtaaagag tcccgcgtca gtctgggcgc atatcctctg gtttcacttg ctgaagcaag
     9061 acaacgacgt gacgatatcc gtaagctact gacgcagaat attaaccccg cccaccagcg
     9121 catgtctgat aaagccgcag cgtcaccgga aaagtatttt aaagccgtgg cgcttgcatg
     9181 gcacaaaacc aacaaaaaat ggtcgcctga ttatgccgcg cgcatcctcg ccagcatgga
     9241 aaatcatatc tttccggcga ttggtcatct gcctgtcact acgctgaaaa cgcagaattt
     9301 cactgcgtta ctgcgggtta ttgaggataa aggttttctg gaagtcgcgt cccgaacccg
     9361 gcagcaactc tgcaacatca tgcgttacgc cgtacagcag ggattcaccg aaaacaacct
     9421 ggcgcagcat ctggaaggcg tcaccgcgcc gccggttaag aatcactatc ccgccctgcc
     9481 gctggagcgg ttgcccgaat tgtttgagcg cattggcgac tatcagcagg gacggcagct
     9541 tacgaggctg gcggtggtgt tgactctcca cctgtttatc cgttccagcg agctgcgctt
     9601 tgcccgctgg ggtgagatag atttcagaaa caaaatctgg accatccccg ccacaaggga
     9661 agcgattgag aaagtccgtt tctctggccg tggcgcaaaa atgcgtactc catatatagt
     9721 gccgctttct cgtcaggcta tcgccattct gaagcagata aaggaaatct ccggccatct
     9781 ggaactggtg ttccccggcg accataaccc gtataagccg atgagcgaaa acactgtcaa
     9841 ccgggcgttg cgtcttatgg gctatgatac caaaactgat gtctgtgggc atggattccg
     9901 gacaatggcg tgtagcgcat tagtggaaac tgaactctgg tcacgggata ccgtggagcg
     9961 gcagatgagt catcaggagc gcaacagcgt tcgggcagcg tatatccacc gggctgaaca
    10021 tctcgacgcc cgtacagcca tgatgcagtg gtggtcggat tatctggatg taagtcgcga
    10081 ggggtacgtt gcgccgtata tttatgcgcg gcggcataag gcggcctgag acagtggcta
    10141 tataatttgt taaaaatgaa aaagcagatc ctgattgaat ccggatctgc tttttacatt
    10201 aggcaatcgc tgccagacaa tctgcaccag aaacgccata actgcaccag ttcagtacca
    10261 ccgcttacct gcgccagtct gccgtcgcct gtctgtgtca ggactgcgcc agatcttatc
    10321 gaataaacat caaactgcgc cagtgttacg gccctttcag ccctttggcc ttttccggtc
    10381 tggcgctgtt acccttagcc gccccttacc ctttccggcc tttttccttt gctggcgcaa
    10441 tcgccagaaa aatcgtcaag ctgcaccaga agcctgccaa taggtcatac cgttcagaag
    10501 catcgttatt gagaggaaac cgtacaaaaa atttctacgt agaaattttt tcggtggata
    10561 acgatgaata aagagtattt tataatgtga tggctatcaa aaatcgacca tccaaaaata
    10621 attcattgtt cattgattta taatgaataa ccatgaattt aatagtcgat gattattgtt
    10681 tttatcagta ttgataggaa agtatacaaa aaattttggc cccaaaattt tttgtacgaa
    10741 aaccgatgaa taacgcgaaa ttaataggaa accatccaaa attatttggg gcaaataatt
    10801 ttgcccgaaa accgatggat aactcgatct tttcaaagca acggctatca atcagtatcc
    10861 tttcttccgt aaacctgcgc cacataccgc ccgcgcccgt cgccgtgtcc caaatccatc
    10921 gccgtcattg ccagcgcttc tttctcactg aatccctgcg ccagataatg acgaatggca
    10981 tcctgcgccc acgcatagcg caacgagtgc ggggaatatg tgccagttaa cccgagacgt
    11041 gacgcctggc tgtgccagta tttcatcgcg cttttcaggt cgggtttatc tatcagcctg
    11101 ccgtggcgat cttctgccac aaccaacgca ttatccagcg cttttctgat agcgacagca
    11161 tccagaataa cggtttctcg cggacgcccg cctttggtgc cgaacaccac ggttaaacgg
    11221 ggctcacccc gctccagcga ttgcttccac gttcttaatg actgcgcact ttgcaccacc
    11281 tcctgcgaac gtaatcccat cagccttgag agttccagcg ccgctgccat
//
LOCUS       DADMJB010000138        11237 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.138, whole genome shotgun sequence.
ACCESSION   DADMJB010000138 DADMJB010000000
VERSION     DADMJB010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11237
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.138"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            63..662
                     /locus_tag="JN078_003193"
     CDS             63..662
                     /locus_tag="JN078_003193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000905087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HAY9042300.1"
                     /translation="MLIGYVRVSTNDQNTDLQRNALVCAGCEQIFEDKLSGTKTDRPG
                     LKRALKRLQKGDTLVVWKLDRLGRSMKHLISLVGELRERGINFRSLTDSIDTSSPMGR
                     FFFHVMGALAEMERELIVERTLAGLAAARARGRTGGRRPKLTKEQHEQIARLIKNGHD
                     RKQLAIIYGIGTSTIYRYHPVGDIQTEETTGQTQENENR"
     gene            complement(691..1179)
                     /locus_tag="JN078_003194"
     CDS             complement(691..1179)
                     /locus_tag="JN078_003194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001761054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9042301.1"
                     /translation="MMMIYGMFVFELRTLPHQQLQQNKSWRHVKNERVNRSASWQYIG
                     AGDDRIVLSGVLYPEITGGEVSLSLLTTQAYTGRPWPLIDGVGQIYGMYVLTETNTTR
                     SEFDRYGKAKKIEFSLTLERCDEDLRERLQSSSFSDMLSGFKDKVTSSLNSAASSVKG
                     LF"
     gene            complement(1192..3999)
                     /locus_tag="JN078_003195"
     CDS             complement(1192..3999)
                     /locus_tag="JN078_003195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000853438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HAY9042302.1"
                     /translation="MKTLDIRVAFSAVDRLTRPAENARRLMGQFGDSIQRTQGAIKNL
                     ERQARSFERARDAVSKADAGIVKARRQLNALNQLQRTGTVLSEKQQKLMQQLSTRLER
                     LNESRTREIQKMRELGGELKRHGISLTGSDNTIQQAIRRTEQYNNQLERERQALARVT
                     RARERYSRAQETAGKLKTGGALAIGAAAAGGYAAGRFLQPAIGFGKEMSRVQALTRID
                     QNSPQFKALREQALKLGSETQFTAGDAASGQAFLAMAGFTPQAIQAALPGVLSMATAG
                     GMDLGETADIGSNILTQFGLSADQMDRVGDTLTAAFTRTNTDLRALGETMKYAGPVAG
                     KLGISLEQAAAMAGVLANMGIRGSDAGTAMRASLARLASPPKAAAEALKELGVSVSDA
                     GGKMRPMEDVLADLYKATRKYGEVDRVSFFKDIAGEEAFTSFMALVDAAGDGSLPKLR
                     KELEGARGEAERTAKVMANNLDGDLKSLSSAWEGLRIRIADLIDGPLRSVTQWLTRVV
                     SKVTALAQAHPALTRQLLIAGGALLAMTATVGSLSLAIGVLAGPLAKLRLGFSLLTGS
                     MNAVRVLPALWGMVTGSVSLLGGAIGALFSPVGLIVAALAGAAVLIWKYWDPIRAFFA
                     GVFSGIMERLTPLRETFERFGPVFDAIGSGISQVFNWFKSLLSPMESSKETLDKCTSA
                     GEIFGNVLGGALQLVLTPAKMLLDTLAWILEKLGVLPDEAERARKKIEDAQRAAILQD
                     KVALLQGDLAKINPPKPVENGNGTGGDNPKDNKPLTDSNTGTLRRLSKIADNTGKLVE
                     ETKKRIGPGDIVFKNLPRALAVRGEWQERKIAQVSKPAPAINITPVVPAPLPPALVPV
                     VAASSRPVAEAIRSPVASVPVTSRNREPVAFGFGGEIHVHLHNVVTQNPRELAKLVGE
                     MVRAEMERRARAGRGCFYDKD"
     gene            complement(4037..4141)
                     /locus_tag="JN078_003196"
     CDS             complement(4037..4141)
                     /locus_tag="JN078_003196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000333494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HAY9042303.1"
                     /translation="MCFEHIEDLVADIAAIFNWSPAEIFMMTPGEVVS"
     gene            complement(4150..4524)
                     /locus_tag="JN078_003197"
     CDS             complement(4150..4524)
                     /locus_tag="JN078_003197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000651574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9042304.1"
                     /translation="MKDIDTETRNNTVADNVTAVEDMAVERGVKLTRPIERGGEKITY
                     VEITGAIEQAGSLRGLSLSDVLNLKADTMFTLLPRVTSPRLDEVMIKKMSSRDFIQLC
                     AVAVNFMSEPDSGAKSVQETAA"
     gene            complement(4580..5090)
                     /locus_tag="JN078_003198"
                     /pseudo
     CDS             complement(4580..5090)
                     /locus_tag="JN078_003198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310671.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
     gene            complement(5090..6274)
                     /locus_tag="JN078_003199"
     CDS             complement(5090..6274)
                     /locus_tag="JN078_003199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath family protein"
                     /protein_id="HAY9042305.1"
                     /translation="MSETRFHGARVTENTDLVTAINDVDSSVIGIVATADDADAKLFP
                     LNKPTLLTRVNDVLGKCGTTGTLYRALKAIADQVSTKVIVVRVAEHKEEDGKTQDQLV
                     IGGSEDDGSYTGMYALLVAEQDESIGYRPRILAAPELDTEAVTKSLCVIADKLRAFVY
                     ASCHGCNTMAEAITYRQKFNEREVMLLWPDFIAYNPKNGKNETFPAPAYACGLRAYID
                     HEQGWHKSLSNVPVKNVLGMSRHVFWSLQAEDSDANSLNNKEITTIIRRNGFRFWGNR
                     TPETNAYIFEVYTRTAQVLADSIAEAQFETIDSPLTPANVKDVISAIRAKLDSLVTAG
                     KLIGAECWYDVVDNSTTDLRQGRVRIRYKYTPVPPLEDMELYQTFTDEYFEPAFAVLG
                     GA"
     gene            6432..7541
                     /locus_tag="JN078_003200"
                     /pseudo
     CDS             6432..7541
                     /locus_tag="JN078_003200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001494339.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
     gene            7790..10909
                     /locus_tag="JN078_003201"
     CDS             7790..10909
                     /locus_tag="JN078_003201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000580159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9042306.1"
                     /translation="MIGQFLSATEILAKNYVRNKMVKNPFYSNLKWNFIEKNIIRLTS
                     SPVKSVLCISAFSFVLLYVGYLNELFIKNNLLHYFPFRHSLTEWQTTILSGQLTIIGI
                     VYPLVIGLVSVLFQKKADRKIAQTAYQRYSGFMLAGLSGLFLSGFILLSVLIKTVFGS
                     YLYGIACLISILWLLINIVLSIWFFIVSLEILDDVKRQIIIKRYIAFEIVMPHICNKI
                     SAKLRLYPIYQKHNYSNLEITQADYKGEYISVASSYSKEDELSLYHRPFQLTLNLINY
                     QLKKKNHFASFVIGDNRTKETESTGKILFSVKNIKPDSLLIKILKQCFYRAPIKGGDF
                     SVSLTMQAITADTYMYLRDSDLISFDNAISALINNFNNLCDLYFFQDDNTNNNFLLIT
                     TELFERSFQYEFSDEVYKISNNSMDKINLSERFFELCLWSGVRIINNRKHLISNELCI
                     YMGITRSQWSILTEWFRNNQSLLNASLRSRYNRILRTYITVWEQYQESINFRFCNTEN
                     SDLFELFCKTQLQELPSMIIDATQTRDPSTIDTAVDLINRWQHSMNIDSHSVEKYSYK
                     GQLFNPGFFISKKLNFNSDREWFNIAIINALTDMRICTCLYLTSRINTSDKLMTHYIK
                     LILEGKLIDQTGGYETPTEEIDNASQLIKILIRICLWTWSENMEHNGWMNSLARRLRD
                     YDKTDMVMGRVYSNVFDCGFIDMEQSWVQLLLIFSKKNDSVSKEIKEAIENNYITYRE
                     KQRLIGVLSKICNSIEYTKIKLTLTLDDLQTKKENLRKLLQEHINMLKKDLDMRLQDA
                     AIDVHRLDSTARKTSEHLRKRIKKTLPLSLFKSIDFKQASDCFTKHKISIKIDKEPYA
                     EGIESIPYINEGDIQADLILKDIQRIILSNLFSTGCSQHTVIEDFNMLIDHIKSSADL
                     AGKLVLVMSKEIFQQYNRMLFDNPNLRELMRKNDDGSMNITTESGTRKVYFLPFVNQP
                     FSLVVKDNYFTKLIIREYDNNKLVNVTSENIKSDSDKFKLTLNYELNIVFEGNADLKI
                     AHSQRVTSE"
     gene            11045..>11237
                     /locus_tag="JN078_003202"
     CDS             11045..>11237
                     /locus_tag="JN078_003202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001512982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ogr/Delta-like zinc finger family protein"
                     /protein_id="HAY9042307.1"
                     /translation="MFRCPLCGASARIRTSRPENDSNTVRQKYYQCNNLECGVCFSTL
                     EAFHKFTSKHASPIHSSEGI"
BASE COUNT         3076 a         2817 c         2516 g         2828 t
ORIGIN      
        1 ttaaataatg gccgtttctg gcctgcatgg catgatttgc gcttttggac gggagattca
       61 gtgtgctgat tggctatgta agggtatcaa caaatgacca gaatacagac ctgcaacgaa
      121 acgctcttgt ttgtgcagga tgtgaacaaa tatttgaaga taaattaagc gggacaaaga
      181 cagaccgacc gggattaaaa cgcgctttaa agcgccttca aaaaggtgac acgctggttg
      241 tctggaaact ggatcgcctc gggcgaagca tgaaacatct gatttctctc gtcggggaac
      301 tacgggagcg agggattaat tttcgcagtc tgaccgacag catagacaca tcttctccaa
      361 tggggcgttt tttcttccac gtgatgggtg ccctggctga aatggaacgt gaattaattg
      421 ttgaacgtac actggccggg ctggcggcag cgcgcgcaag ggggcgcaca ggcggacgtc
      481 gaccgaagct gacaaaagaa cagcatgagc aaatagcaag gctaatcaaa aacgggcacg
      541 acagaaaaca actggcaata atttacggca ttggcacatc gacgatttat cgttatcacc
      601 ctgtaggcga tatacagact gaagaaacaa ccgggcagac tcaggaaaat gaaaaccgct
      661 aatctgacca ttagcggttt ttgtgttaaa tcagaacagc cctttaactg aactggccgc
      721 gctgttaaga gatgatgtca ccttatcttt gaagccggac agcatatcac tgaacgatga
      781 ggattgcagg cgctcccgca aatcctcatc acagcgttca agagtcagtg aaaattctat
      841 ctttttcgcc ttaccgtagc gatcaaactc ggagcgggtc gtattcgttt cagtcaggac
      901 atacatgccg taaatctgcc cgacgccatc aatcaaaggc cagggtcgtc ctgtatacgc
      961 ctgcgtagtc agcagcgaca gcgacacttc gccacctgta atttcaggat aaagcacacc
     1021 agaaagaacg atgcgatcat cacctgcacc gatatactgc cagcttgctg aacggttaac
     1081 gcgttcattt ttcacatgcc gccagctttt gttttgctgt aactgctgat gcggcagcgt
     1141 gcgcagctca aaaacaaaca tgccgtagat catcatcatg gccatgactc ctcaatcttt
     1201 atcgtaaaaa cagccacgcc cggcacgggc gcgccgttcc atttctgccc tgaccatttc
     1261 accgaccagt ttcgccagtt cgcggggatt ctgcgtaaca acgttatgca gatgaacatg
     1321 aatttcacca ccaaatccga aggcaacagg ctcccggtta cgggaagtta caggaactga
     1381 tgccactgga gatcgtatag cctccgccac cgggcgggag ctggccgcaa caacagggac
     1441 cagcgccgga ggcagcggag ccggaaccac gggtgtgata ttaattgcgg gggcaggctt
     1501 actgacctgc gcaatcttcc gctcctgcca ctccccacga acagcaagtg ctcggggcag
     1561 gtttttaaag acaatatcgc cggggccaat gcgttttttc gtctcctcaa ccagcttacc
     1621 tgtgttatca gcaattttgc tgagtctgcg cagcgtaccg gtattgctgt ctgtgagcgg
     1681 tttattgtct ttggggttat cacctccggt gccattgcca ttttccacag gcttcggcgg
     1741 attgattttc gccagatccc cctgaagcaa ggcaaccttg tcctgaagaa tggccgcacg
     1801 ctgtgcgtct tcgattttct tgcgcgccct ttccgcttca tccggaagca caccaagctt
     1861 ttcaagtatc cacgccagcg tatccagcaa catttttgca ggtgtcagaa caagttgtaa
     1921 cgcaccgcca agaacgttac cgaatatctc gccagcactg gtacatttat ccagagtttc
     1981 cttgctggac tccatcggtg acagcagcga tttaaaccag ttaaacacct ggctgatccc
     2041 actcccgatt gcgtcaaaaa caggaccaaa ccgttcaaag gtttcgcgca acggggtcag
     2101 cctttccata atcccgctga acaccccggc aaaaaatgcc ctgatgggat cccagtattt
     2161 ccagataaga acggcagctc cggcaagcgc agccacgata agaccaaccg gactgaacaa
     2221 cgccccgata gcgcctccca gtaaagaaac ggaacccgtc accattcccc atagtgctgg
     2281 cagaaccctg acagcattca ttgatccggt caggagggaa aaaccaagac gcagttttgc
     2341 cagcgggcca gcaagcacac caatagccag cgacaacgag ccaaccgttg cagtcattgc
     2401 cagcaatgca ccgcctgcaa tcagtagctg gcgcgtcagt gcgggatggg cctgcgccag
     2461 cgccgtcacc tttgatacca cacgcgtgag ccactgcgtg acagaacgca gcggaccgtc
     2521 aatcagatct gcaatgcgga tgcgcaaccc ttcccatgca ctgctgagtg atttcagatc
     2581 gccgtcaagg ttgttggcca taacctttgc cgtgcgttca gcctcaccgc gcgcgccttc
     2641 aagttctttt ctcagtttgg gtaaggagcc gtcacctgcc gcatcaacga gggccataaa
     2701 tgatgtgaaa gcctcttctc cggcaatgtc cttaaagaac gatacccggt caacttcccc
     2761 gtatttgcgg gtagctttat aaaggtcagc cagcacatcc tccatcgggc gcattttgcc
     2821 cccggcatcc gagacagaca cgccaagctc tttcagcgcc tctgctgccg cctttggcgg
     2881 tgatgccaga cgagccaggc tggcacgcat tgccgtacca gcatcactcc ccctgatacc
     2941 catattcgcc agcacgcccg ccatcgctgc ggcctgctcc agagatattc ccagcttacc
     3001 cgccaccgga cctgcatatt tcatggtttc acccagtgcg cgaaggtcag tgttggtacg
     3061 ggtaaacgct gcggtgagtg tgtcgccgac ccggtccatc tggtcagcag aaagaccgaa
     3121 ctgcgtcaga atatttgagc caatatccgc cgtctcaccg aggtccatac cgccagccgt
     3181 tgccatgctc agtacgccag ggagcgcagc ctgaatggcc tgtggtgtaa agccagccat
     3241 tgcaagaaat gcctgtccac tggcggcatc gcctgcggtg aactgcgttt cagagccaag
     3301 ttttaacgcc tgctcacgca gcgccttaaa ctgcgggctg ttctggtcga ttcgcgtcag
     3361 tgcctgaacg cgggacatct ctttgccgaa cccgatcgca ggctgcaaaa aacgcccggc
     3421 agcatagccg cccgccgctg ccgcaccaat tgccagcgca ccacctgttt tcagttttcc
     3481 cgctgtttcc tgcgcgcgcg aataccgctc acgcgcccgt gttacacgcg caagcgcctg
     3541 ccgttcgcgt tcaagctggt tgttgtactg ttcggtgcgt ctgatggcct gctggatggt
     3601 gttatcgctg cctgtcaggg aaatgccgtg gcgtttcagc tctccgccaa gctcccgcat
     3661 tttctgaatt tcccgtgtgc gcgattcatt caggcgttca agccgggtgc ttaactgctg
     3721 catcagcttt tgttgttttt cgctgagcac tgtacccgtg cgttgtaact gattaagggc
     3781 gttaagctgg cgtcgtgctt tcacgatgcc agcatccgct ttactgacag cgtcacgggc
     3841 gcgctcaaat gatcgcgcct gacgctcgag atttttgatc gccccctgcg ttcgctggat
     3901 ggagtcacca aactgcccca tcaggcggcg ggcgttttcg gcaggccggg tcagcctgtc
     3961 aacggcgctg aaagcgaccc ggatatcaag agtcttcatt gtctgcattc ccgctacgaa
     4021 gtgccgcccg ctcacgtcag ctaaccactt cgccgggcgt catcatgaag atttcggcgg
     4081 gcgaccagtt aaaaatggcg gcaatatccg ccaccagatc ttcgatgtgc tcaaagcaca
     4141 ccagggtgat tacgctgccg tctcctgcac gctcttcgcg ccagagtctg gctcgctcat
     4201 aaaatttaca gccacagcgc acaactgaat aaaatcgcgt gacgacattt ttttaatcat
     4261 cacttcatcc agtcgtggcg aggtcacgcg aggcaacagc gtgaacatgg tatccgcttt
     4321 cagattcagc acatcagaca gcgacagacc acgcagggat ccagcctgct caatagcccc
     4381 ggtgatctcc acatacgtga ttttttcgcc accacgctca attggtcggg tcagttttac
     4441 gccacgttcg acagccatat cctcaactgc cgtcacatta tccgccacgg tgttattccg
     4501 ggtttcagta tcgatgtctt tcatctgttg tctccttttc agtcagaggc gacgcactgc
     4561 gccgccagca tattacttat cagccaagcc caagcgcgga acggatgcga tcgggcacaa
     4621 tgtccttgcc gtccttccgg taaatgaagt tcagcaggtc aatctcccac aacgggcgat
     4681 cgttaacact cagcttgtag taggtgtttt aatggcgtaa gtgtgtgatg tggcttcgcc
     4741 ctgtttggct tcccccatat caatttccgt cacacgtccg cgcatttcga cttcatacag
     4801 gtcgctttct gcatcggtgt agtattcacc cgcaaaacgc agcagcgtgc cgtcaatcgt
     4861 gccgccatac ttaaggaaca gctcacgaac tgcgccccca tgacaaagct cgcatcaagc
     4921 gcggagtcgt ccagaccgag atcaatactt accgcaccca tcatgccacc accccggtag
     4981 ctgtcggttt tgcgcgtcag cttaggcaga gtgacggacg tcacattacc cacttcgttt
     5041 tcaccatcca caaacagcgt aaaaaagcga agatgttttg gcacagccat caggcacctc
     5101 ccagcaccgc aaatgcgggt tcaaagtatt catcagtaaa cgtctggtaa agctccatgt
     5161 cttccagtgg cggaacgggc gtatatttgt agcgaatacg cacacgtccc tgacgtaaat
     5221 ccgtggtgct gttatccacc acgtcatacc agcactccgc gccaatcagt ttcccggcag
     5281 tcaccagtga atccagtttt gccctgatgg cactgataac atccttcaca ttcgcaggcg
     5341 tcagtggact gtcgatggtt tcaaactgcg cttccgcaat tgaatcagcc agcacctgtg
     5401 cggttcgggt atacacctca aagatgtagg cgttcgtttc cggtgtgcgg ttaccccaga
     5461 agcggaaccc gttgcgacga ataatggtcg tgatttcttt gttgttgagg ctgttggcat
     5521 cgctgtcttc ggcctgcaac gaccagaaca catgcctcga catccccagc acatttttaa
     5581 ccggaacgtt ggacagcgat ttgtgccatc cctgttcatg gtcaatgtac gcacgaaggc
     5641 cgcacgcata ggcaggcgcg gggaacgttt cgtttttgcc atttttcggg ttgtaggcga
     5701 tgaagtccgg ccataagagc atcacctcac gttcgttgaa tttctggcgg taggtaattg
     5761 cctcggccat cgtgttacag ccatgacatg aggcatacac aaacgcgcgc agtttatctg
     5821 caatcacgca cagggatttt gttaccgcct ccgtgtccag ctccggcgcg gccagaatac
     5881 gcggacggta tccgatgctt tcatcctgct ctgcaacaag cagcgcatac atccccgtat
     5941 agctgccgtc atcctcagaa ccaccgataa ccagttgatc ctgcgtcttt ccgtcttctt
     6001 ctttgtgttc agccacgcga acgacgatca cctttgtgct cacctggtct gcgatggcct
     6061 taagcgcacg ataaagcgtc cccgttgtcc cgcattttcc cagcacgtca ttgacgcggg
     6121 tcagcagtgt gggcttgttc agcgggaaca gcttcgcgtc cgcatcatcc gccgttgcca
     6181 cgataccgat aacgctggaa tcaacatcgt taatcgctgt taccaggtcg gtattctccg
     6241 taacacgggc accatgaaaa cgagtttcac tcatagcttc agccccttgt atccgttaaa
     6301 tgattcagca acaatcatca cccaccacgc gcgtaatctc acccctgcgc cgttctcccg
     6361 ccacggcgac aacaaaaagc agtaaccccc tccgcacgca catgcgacca tgccgcacag
     6421 ggagggagca gatgaccgac accaccatgc aattgctcag tcagggcacg gcccccgtga
     6481 aaatgccgga ttttgatatt ctctcggagg gtaaaacgct gtcaggcgtg gcggagcgcc
     6541 tgatgagcct gtaactgacc gacaaccggg gatttgaggc ggaccagctc accatcacgc
     6601 tggatgatgc ggatggtcag ttgcagctac cgccacgggg cgcgcgtctg acggttctca
     6661 ttggctggaa aggggaaccg ctgacagaaa aaggcactta cattgttgat gaaatcgctc
     6721 acgaaggacc gccggacagg ctgactgttt cagccagaag cgcagatttt cgggatgaat
     6781 ttaacgttaa acgtgaggtg tcctggcatg atgtgaccgt tgagcgtgtg gtatccgcca
     6841 tcactcatcg gtacggtctg aaaccgcaaa tcagcgaaat gctgatggat atcgaaatcg
     6901 accacgccga ccagaccgaa gaaagcgaca tgtcctttct tacgcgcatg gcggaaatgc
     6961 tgggagcaat cgccacggta aaaagcggca atctgttatt catcatgcca ggtggtggcg
     7021 tgaacgcaca ggggcagccg ttgccctcgt tcgccattac acgcagcagc ggcgatcgcc
     7081 atcagttccg cattgctgac cgcgaggcgt atacgggggt acgcgcctac tggcttgatc
     7141 ttaattacgg gaaaaagaaa aaagtcagcg tgaaacgccg caaaccgcca aaacccaaaa
     7201 aggagaaaag cagcagtcgg gaaggcgact atatggaagg tgcggaaggc aacgtgtttg
     7261 tgttacgcaa gacttatcag aacgagcagg cagcaagacg cgcagcggcg gcaaagtggc
     7321 agcagctaca acgcggagcc gcatcattct ccatcacgct ggcgcgtggt cgtgcagaac
     7381 tctatcccga aatgcatggc acagtgacag gctttaaaag cgagattgat tatcaggact
     7441 ggactattgc aaaagccgag cacaccattg ataacagcgg ctttaccacg cagcttgaac
     7501 ttgaagcaaa aatcccggaa tggatagcag aaacagaata aatctcttaa aaatattatt
     7561 tttgagatgt gcttctacac tgacagtaag aacaaaagat aatgtatcag cccactagat
     7621 gtcagaggtt ggggcatcaa ccagatgcta acaataatac ggatgttttt cccacatgac
     7681 agaggaagtc aagtataatc ttcacagtcc atcccgtcca agggaatatg actcaatagt
     7741 aaaagttcca gtttagttag tagacccaca ctttatagaa gagtaattca tgattggaca
     7801 atttttaagt gcaacagaga ttttagcaaa gaactatgtt cgtaataaaa tggttaaaaa
     7861 tccattttat tcgaatttaa aatggaattt tattgaaaaa aacatcataa gattaacatc
     7921 ctcaccggtt aaatcagtac tttgcatatc agctttttca tttgtactac tttatgttgg
     7981 atatttaaac gaattattta taaaaaataa tcttttacat tatttcccgt ttaggcattc
     8041 attaaccgaa tggcaaacaa ccattttaag tggccaattg acaattattg gtattgtata
     8101 cccccttgtt ataggtttag taagtgtctt attccaaaaa aaggcagata gaaaaatagc
     8161 ccaaactgct tatcagcgtt actcaggatt catgcttgct ggactcagcg ggcttttctt
     8221 atcaggattt atacttctca gtgtactaat taaaactgtc tttggaagtt atctttatgg
     8281 tatagcttgt ctaatcagca tattatggct tttgataaac atagttcttt ctatttggtt
     8341 ctttatcgtg agtcttgaaa ttcttgatga tgtaaaacgg caaataatta taaagcgata
     8401 cattgccttc gaaatagtaa tgccccatat ttgtaacaaa atctcagcca agcttaggtt
     8461 ataccctatc tatcaaaaac ataactattc aaatttagaa atcacgcaag ccgattacaa
     8521 aggagaatac atatctgtgg ctagcagtta ttctaaggaa gatgagttaa gtttatatca
     8581 ccgtcctttt caacttactc ttaatcttat taattaccaa ctaaaaaaga agaatcattt
     8641 tgcgtcattt gtcattggtg ataatcgtac aaaagaaaca gaatccacgg gtaagatact
     8701 ttttagcgtt aaaaatatca aaccagacag cttattaata aaaatactta agcaatgttt
     8761 ttatagggct ccgattaaag gaggagattt ttccgtaagt cttacaatgc aggctataac
     8821 agcagatacg tatatgtatc tgcgggattc tgatctcatt agttttgaca atgctatctc
     8881 tgcattaatt aataacttta ataatctctg cgatttgtat ttttttcaag atgataatac
     8941 caacaataac ttcttactga tcactacaga attatttgaa cggagttttc aatatgagtt
     9001 ttcagatgaa gtttataaaa tatcaaataa ttccatggat aaaattaatc tttctgaaag
     9061 attttttgaa ttatgtcttt ggagcggagt gcgtattatc aataatagaa aacatcttat
     9121 cagcaatgaa ctttgtatct atatgggaat tactcgttca caatggtcaa tattaacaga
     9181 atggttccga aacaaccaat cactcttaaa tgcctcgctt cgttcacgtt ataatcgtat
     9241 attaagaacc tatatcactg tttgggagca atatcaagaa agcataaact ttcgtttctg
     9301 caatacagag aattcagatt tatttgaatt attttgcaaa acgcaactac aagaacttcc
     9361 atcgatgatt attgatgcaa cacagactcg cgatccttct actattgata cagccgtcga
     9421 tcttattaac cgatggcagc actcaatgaa tattgacagc cattcggtag aaaaatacag
     9481 ttacaaaggc cagcttttta acccgggttt tttcatatcc aaaaaactaa acttcaattc
     9541 agacagagag tggttcaata ttgccatcat aaatgcgttg actgacatgc gtatatgcac
     9601 atgtctttat ctgacatcaa gaatcaatac ttctgacaaa ctaatgacac attacattaa
     9661 acttatttta gagggtaaac ttattgacca aaccggtgga tatgaaactc ccactgaaga
     9721 aattgataat gcaagccaac taatcaagat attaattaga atctgcctgt ggacatggtc
     9781 tgaaaatatg gagcacaatg ggtggatgaa tagtttagca aggcgtttac gtgactatga
     9841 taaaacagac atggtgatgg gcagagttta cagtaatgtt tttgactgtg gatttattga
     9901 tatggaacaa tcatgggttc agctattatt aattttttct aaaaagaacg atagcgtatc
     9961 aaaagaaata aaagaagcaa tagaaaacaa ctatataaca tatcgtgaga agcaacgact
    10021 cattggagta ttatcaaaaa tttgtaactc catcgaatac actaaaatca agctgacttt
    10081 aacattggac gatctccaaa caaaaaaaga aaacttaaga aagttgcttc aagagcatat
    10141 taacatgcta aagaaagatc ttgatatgag acttcaggat gctgccatag atgtacatcg
    10201 actagatagc actgcacgta aaacatcaga acatcttcgt aaacgcatca agaaaacgct
    10261 ccctctttca cttttcaaat ctattgattt taagcaggct agcgattgtt tcacaaaaca
    10321 taagatatct attaagatag ataaagaacc gtatgccgaa ggaatagaat ccatccctta
    10381 tatcaatgaa ggtgatattc aagcagactt aattctcaag gacatccaga gaataatact
    10441 ttcaaattta tttagcactg gctgttcgca acataccgta atagaagatt tcaatatgtt
    10501 gattgatcac ataaaatcat ctgctgactt ggctggcaaa ctggttcttg tgatgagtaa
    10561 agagatcttt cagcaatata atcgtatgct tttcgataat cccaacctca gagaactaat
    10621 gagaaaaaat gatgatggct ctatgaacat aactactgaa tccggtaccc gtaaggttta
    10681 cttcttacca tttgttaatc aaccattttc tcttgtggta aaggataact acttcactaa
    10741 attaattatt agagaatatg ataataataa gttagtaaat gtcacttcag agaatatcaa
    10801 aagtgactca gataaattca agctaactct taactatgag ttgaatatag tatttgaagg
    10861 aaacgctgat ttaaaaatag ctcactcgca aagagtgaca tcagaataat atctttgacg
    10921 gcgctcctta gagtgccgtt cgtttattaa ctaatgctaa aaatcattat atagagaaag
    10981 tcatgtttaa atcttagaga atacaaccta gaatagtgta agcactacaa taagagaggt
    11041 cgctatgttc cgttgtccgc tttgtggcgc atctgcccgt atccgcacca gtcgtccgga
    11101 aaatgattca aacaccgtga gacaaaagta ttatcagtgt aacaatctag aatgcggcgt
    11161 atgtttctca acactggaag ccttccacaa attcacttca aagcacgcct cccccattca
    11221 ctcatcagag ggcatcc
//
LOCUS       DADMJB010000139        11007 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.140, whole genome shotgun sequence.
ACCESSION   DADMJB010000139 DADMJB010000000
VERSION     DADMJB010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11007)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11007)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11007
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.140"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(1..121)
                     /locus_tag="JN078_003203"
                     /pseudo
     CDS             complement(1..121)
                     /locus_tag="JN078_003203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858395.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
     gene            398..1273
                     /locus_tag="JN078_003204"
     CDS             398..1273
                     /locus_tag="JN078_003204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001224622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-regulated protein"
                     /protein_id="HAY9042308.1"
                     /translation="MRKFILISMITLASVSLGACRQNATIKQDAPGQKAFLIDGQIYD
                     LHSGKIISSSELLADLATARHLIIGEKHDNAEHHQIELWLIQNLLIQRPQGSVLLEML
                     TSDQQPRVNQVKCWLKDNPVVRDSRVQELLNWQKGWSWEMYGDIVMQLLRGPYPLLNA
                     NIGREQMLALYKKNEFPKGKKSTAPVVQEALRETIIAMHEGNLESQQLTSMLSVQQQR
                     DRYMARQLLSAPVPSLLIAGGYHASKNMGVPLHMEDLATGTHPVVLMLAEKGMNITVD
                     HADYVWFVAPDTTKR"
     gene            1281..2057
                     /locus_tag="JN078_003205"
     CDS             1281..2057
                     /locus_tag="JN078_003205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004095468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HAY9042309.1"
                     /translation="MMNILHFPQSVKWSSWFICSLLLHGLIFLTFIWRFSEVQPAMSP
                     APAIMLQWAEIIEAPSSPLSLPVGIAQQESAVTEEKQQTEDRQQRPVTEDSDATIEIT
                     RKKKSSDGEKKKTRPPRKIKAQTSDSNPTAVSSNAAPQALVESSRIAAPFNSDSTKRD
                     NSEASWESRVKGHLNRYKRYPGDARKRARTGTAVVTFTVNTEGTIVSSFLEISSGTLS
                     LDREAIAVLERAQPLPKPPPEILEGGLFKVKMPITFKLKE"
     gene            2226..4487
                     /locus_tag="JN078_003206"
     CDS             2226..4487
                     /locus_tag="JN078_003206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016536327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HAY9042310.1"
                     /translation="MNVIKLAIGSGILLLSCGAYSQSISEKTNSDKKGAAEFSPLSVS
                     VGKTTSEQEALEKTGATSSRTTDKNLQSLDATVRSMPGTYTQIDPGQGAISVNIRGMS
                     GFGRVNTMVDGITQSFYGTSTSGTTAHGSTNNMAGVLIDPNLLVAVDVTRGDSSGSEG
                     INALAGSANMRTIGVDDVIFNGNTYGLRSRFSVGSNGLGRSGMIALGGKSDAFTDTGS
                     IGVMAAVSGSSVYSNFSNGSGINSKEFGYDKYMKQNPKSQLYKMDIRPDEFNSFELSA
                     RTYENKFTRRDITSDDYYIKYHYTPFSELIDFNVTASTSRGNQKYRDGSLYTFYKTSA
                     QNRSDALDINNTSRFTVADNELEFMLGSKLMRTRYDRTIHSAAGDPKANQESIENNPF
                     APSGQQDISALYTGLKVTRGIWEADFNLNYTRNRITGYKPACDSRVICVPQGSYDIDD
                     KEGGFNPSVQLSAQVTPWLQPFIGYSKSMRAPNIQEMFFSNSGGASMNPFLKPERAET
                     WQAGFNIDTRDLLVEQDALRFKALAYRSRIQNYIYSESYLVCSGGRKCSMAEVIGNDW
                     EGISDEYSDNMYIYVNSASDVIAKGFELEMDYDAGFAFGRLSFSQQQTDQPTSIASTY
                     FGAGDMTELPRKYMTLDTGVRFFDNALTLGTIIKYTGKARRLSPDFEQDEHTGAIIKQ
                     DLPQIPTIIDLYGTYEYNRNLTLKLSVQNLMNRDYSEALNKLNMMPGLGDESHPANSA
                     RGRTWIFGGDIRF"
     gene            4556..5731
                     /gene="senB"
                     /locus_tag="JN078_003207"
     CDS             4556..5731
                     /gene="senB"
                     /locus_tag="JN078_003207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001020413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterotoxin production-related protein TieB"
                     /protein_id="HAY9042311.1"
                     /translation="MNIFTLSKAPLYLLISLFLPTMAMAIDPPERELSRFALKTNYLQ
                     SPDEGVYELAFDNASKKVFAAVTDRVNREANKGYLYSFNSDSLKVENKYTMPYRAFSL
                     AINQDKHQLYIGHTQSASLRISMFDTPTGKLVRTSDRLSFKAANAADSRFEHLRHMVY
                     SQDSDTLFVSYSNMLKTAEGMKPLHKLLMLDGTTLALKGEVKDAYKGTAYGLTMDEKT
                     QKIYVGGRDYINEIDAKNQTLLRTIPLKDPRPQITSVQNLAVDSASDRAFVVVFDHDD
                     RSGTKDGLYIFDLRDGKQLGYVHTGAGANAVKYNPKYNELYVTNFTSGTISVVDATKY
                     SITREFNMPVYPNQMVLSDDMDTLYIGIKEGFNRDWDPDVFVEGAKERILSIDLKKS"
     gene            complement(6104..6292)
                     /locus_tag="JN078_003208"
                     /pseudo
     CDS             complement(6104..6292)
                     /locus_tag="JN078_003208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000198547.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            6256..6540
                     /locus_tag="JN078_003209"
     CDS             6256..6540
                     /locus_tag="JN078_003209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HAY9042312.1"
                     /translation="MHSTLSPLVPVYPVFITVIADHDKPQPSGCLLESQGSLCPICRQ
                     RITHETGWNVHHKVKKVMGGGEELSNLVLLHPNCHRQLHSCEAGSLKKGL"
     gene            6683..6904
                     /locus_tag="JN078_003210"
                     /pseudo
     CDS             6683..6904
                     /locus_tag="JN078_003210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
     gene            complement(6925..6987)
                     /locus_tag="JN078_003211"
                     /pseudo
     CDS             complement(6925..6987)
                     /locus_tag="JN078_003211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001743492.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
     gene            7438..8850
                     /gene="ospC1"
                     /locus_tag="JN078_003212"
     CDS             7438..8850
                     /gene="ospC1"
                     /locus_tag="JN078_003212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspC1"
                     /protein_id="HAY9042313.1"
                     /translation="MNISETLNSANTQCNIDSMDNRLHTLFPKVTSVRNAAQQTMPDE
                     KNLKDSANIIKDFFRKTIAAQSYSRMFSQGSNFKSLNIAIDAPSDAKASFKAIEHLDR
                     LSKHYISEIREKLHPLSAEELNLLSLIINSDLIFRHQSNSDLSDKILNIKSFNKIQSE
                     GICTKRNTYADDIKKIANHDFVFFGVEISSHQKKHPLNTKHHTVDFGANAYIIDHDSP
                     YGYMTLTDHFDNAIPPVFYHEHQSFLDKFSEVNKEVSRYVHGSKGIIDVPIFNTKDMK
                     LGLGLYLIDFIRKSEDQSFKEFCYGKNLAPVDLDRIINFVFQPEYHIPRMVSTENFKK
                     VKIREISLEEAVTASNYEEINKQVTNKKIALQTLFLSITNQKEDVALYILSNFEITRQ
                     DVISIKHELYDIEYLLSAHNSSCKVLEYFINKGLVDVNTKFKKTNSGDCMLDNAIKYE
                     NAEMIKLLLKYGATSDNKYI"
     gene            complement(8954..9102)
                     /locus_tag="JN078_003213"
                     /pseudo
     CDS             complement(8954..9102)
                     /locus_tag="JN078_003213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611146.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            9178..10875
                     /gene="ospD3"
                     /locus_tag="JN078_003214"
     CDS             9178..10875
                     /gene="ospD3"
                     /locus_tag="JN078_003214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector OspD3"
                     /protein_id="HAY9042314.1"
                     /translation="MPSVNLIPSRKICLQNMINKDNVSVETIQSLLHSKQLPYFSDKR
                     SFLLNLNCQVTDHSGKLIVCRHLASYWIAQFNKSSGHVDYHHFAFPDEIKNYVSVSEE
                     EKAINVPAIIYFVENGSWGDIIFYIFNEMIFHSEKSRALEISTSNHNMALGLKIKETK
                     NGGDFVIQLYDPNHTATHLRAEFNKFNLAKIKKLTVDNFLDEKHQKCYGLISDGMSIF
                     VDRHTPTSMSSIIRWPNNLLHPKVIYHAMRMGLTELIQKVTRVVQLSDLSDNTLELLL
                     AAKNDDGLSGLLLALQNGHSDTILAYGELLETSGLNLDKTVELLTAEGMGGRISGLSQ
                     ALQNGHAETIKTYGRLLKKRAINIEYNKLKNLLTAYYYDEVHRQIPGLMFALQNGHAD
                     AIRAYGELILSPPLLNSEDIVNLLASRRYDNVPGLLLALNNGQADAILAYGDILNEAK
                     LNLDKKAELLEAKDSNGLSGLFVALHNGCVETIIAYGKILHTADLTPHQASKLLAAEG
                     PNGVSGLIIAFQNRNFEAIKTYMGIIKNENITPEEIAEHLDKKNGSDFLEIMKNIKS"
BASE COUNT         3403 a         2338 c         2333 g         2933 t
ORIGIN      
        1 tcaggctcgc ccctccgttg taatgtgcca gccgggaggc cgctatcggc ggcttcttca
       61 gataacgacc caggtagcgc gccgtattcc tcccgccggc cattttcttc gacatgtaca
      121 tcaggcgcgg aactcatcgg ggcgcgggaa tgaaatccca ttcagactcc ggatagattc
      181 aagcaagccc acttatcgtc aaaatcggtg ttgcaaaaac gggagtgacc atagatccgt
      241 tttccaagcg gaccccataa tatcggctgg taaacatcac tcgctagtgc attctttttg
      301 ttggtaatga taattattta catttattct ttgatgtttt atcataatta atgttttatc
      361 aataaatata tggaaatata ttgtttcaga tgggaatatg agaaagttca tccttatttc
      421 tatgataacg ttagctagtg ttagtctggg agcctgcaga cagaatgcca ccataaagca
      481 ggatgcgcca gggcagaaag ctttcctgat tgacgggcag atttacgatt tgcacagtgg
      541 caaaattatt tctagcagcg agcttttggc ggatcttgct accgctcgac atcttattat
      601 tggtgaaaaa cacgataatg ccgagcatca tcagattgag ctttggctta ttcaaaatct
      661 gctcatccag cgaccacagg ggagtgtgtt gcttgagatg ttgacgtcag accaacagcc
      721 ccgagttaac caagttaaat gttggctgaa agataatcct gtggttcgag atagccgtgt
      781 tcaggaacta cttaactggc aaaaagggtg gtcctgggag atgtatggcg acatcgtcat
      841 gcagctatta cgtgggcctt acccgctgct caatgccaac attggccggg agcagatgtt
      901 ggcactgtac aaaaaaaacg aatttcctaa aggaaaaaaa tccactgcac ctgtggtaca
      961 agaagctctg cgtgaaacca tcatagctat gcatgaaggc aaccttgaaa gccagcaact
     1021 gacgtcaatg ctctctgttc agcagcagcg ggatcgctac atggcccgcc agcttctgag
     1081 tgccccggta ccgtcgttgt tgattgcagg tggttatcac gcgtcaaaaa acatgggcgt
     1141 accgttacac atggaagatc ttgccaccgg cacccatcca gtggtgttga tgcttgcaga
     1201 aaaaggaatg aacatcacag tagatcatgc tgactacgtg tggtttgtag cgccagatac
     1261 aacaaaaagg taaaccatgg atgatgaata ttctccactt cccacagtcg gtaaaatgga
     1321 gcagctggtt tatctgttct ctactgcttc atggactgat tttccttacg tttatctggc
     1381 gtttttccga agttcagccc gctatgtctc ctgcaccggc gatcatgctg caatgggcag
     1441 aaattataga ggctccttct tctccacttt cgcttccggt gggaatcgct caacaggagt
     1501 ccgcagtgac agaagaaaag caacaaactg aggacagaca acaacgtcct gtcactgaag
     1561 acagtgatgc aaccattgaa ataactagga agaaaaagtc atccgatgga gaaaagaaaa
     1621 agacacgtcc acctcgtaag ataaaggctc aaaccagcga cagcaacccc acagccgttt
     1681 ccagtaatgc tgcacctcag gctctggtcg aatcgtcccg tattgctgcg ccttttaaca
     1741 gtgactcaac aaagcgagat aattctgagg catcttggga aagcagagta aaaggccacc
     1801 ttaaccgtta taaacgttac cctggcgatg ccagaaaacg tgcacgaacc ggcacagccg
     1861 ttgtgacttt taccgtaaac acggaaggca ctattgtcag tagtttcttg gaaatctcgt
     1921 caggaaccct ttctcttgac cgcgaagcta ttgctgtttt agaacgcgct caaccacttc
     1981 ccaaaccacc gcctgaaata ttggagggag gattatttaa agtaaaaatg ccgattacct
     2041 ttaagttgaa ggagtaaagg gataattggc cgttcaagtt catttaactg aaatttaatt
     2101 ttcattttta tgctgaacat tttatcaaac ttttccactg tcgaaaaaat caaaaagaca
     2161 gtagatcata attaataaac aaatagttat acttatcttt attaatatta tatccaagga
     2221 aatttatgaa cgttataaaa ctggctatcg gctcaggcat attattgctc agctgcggtg
     2281 cttactcaca atccatcagt gaaaaaacta attccgacaa aaaaggagcg gcagaattca
     2341 gtccgctcag cgtttctgtc gggaagacga ccagtgagca ggaagctctc gagaaaacag
     2401 gcgcgaccag ttcccggaca acggacaaaa acctgcaatc acttgacgca acagtgcgta
     2461 gtatgcctgg tacttatact caaatagatc ctggtcaggg agcaatcagt gtgaatattc
     2521 gaggcatgag cggatttggt cgtgtaaaca ctatggtcga tggtattacc cagagttttt
     2581 acggaacctc tacctccgga acaacggcgc atggttcaac taacaatatg gctggcgtac
     2641 ttatagatcc taacttactg gtagcagttg atgttacacg cggtgacagc agtggctctg
     2701 aagggatcaa cgcccttgcc ggtagtgcaa atatgcgtac tattggcgtt gacgatgtaa
     2761 tatttaacgg taatacatat ggccttcgtt cacgtttctc tgtcggtagt aatgggctgg
     2821 gacgcagcgg aatgatcgcc cttggtggaa aaagcgacgc ttttacggat acgggaagca
     2881 ttggcgttat ggctgctgtg agtggcagtt ctgtgtactc taatttctca aatggttctg
     2941 gaattaacag caaagagttt ggttatgata aatatatgaa gcagaacccc aaatcccaac
     3001 tgtataaaat ggatatcaga ccagacgaat ttaacagctt cgaactttcc gctcgaacct
     3061 atgaaaataa atttacacgt cgtgatataa ccagtgacga ctattacatt aaatatcatt
     3121 acaccccttt ttctgaatta attgacttta acgtaacggc cagtaccagt cgcggtaatc
     3181 aaaagtatcg tgatggctcg ctgtatactt tctacaaaac ctcagcgcaa aatcgttctg
     3241 acgcgctgga tatcaacaat accagccggt tcactgtcgc ggacaatgaa ctggagttta
     3301 tgctgggcag caaactgatg cgtacccgct atgaccggac cattcactca gcggcgggcg
     3361 acccgaaagc gaatcaggaa tcgatcgaga acaatccgtt cgcaccctcc ggccagcagg
     3421 atatttcagc gctgtatacc gggctgaagg ttacgcgcgg catctgggag gcagatttca
     3481 atctcaacta cacacgtaac aggatcacag ggtacaagcc cgcctgcgat tcacgcgtta
     3541 tctgcgtgcc acagggtagc tacgatattg acgataaaga gggtggcttc aacccttcag
     3601 ttcagctttc tgctcaggta acaccatggc ttcagccgtt cattggctac agcaaatcca
     3661 tgcgcgcccc gaacatccag gagatgttct tctctaattc aggaggcgca tccatgaacc
     3721 cattcctgaa gcctgaacgt gcagaaacct ggcaggcggg ttttaacatt gataccagag
     3781 atttactggt cgaacaggat gccctgcgct ttaaggctct ggcgtaccgc agcaggatcc
     3841 agaactacat ctacagcgag tcttatctgg tttgttctgg aggtcgtaaa tgcagtatgg
     3901 ctgaggtgat tggcaatgac tgggagggca ttagcgatga atacagcgac aatatgtaca
     3961 tctacgttaa ctcggcaagc gacgttattg caaagggctt cgaactggag atggattatg
     4021 atgcaggttt tgcttttggc cgactctctt tcagccagca gcaaacagac cagccaacct
     4081 ccatcgccag cacctacttt ggcgcagggg atatgaccga actgcccaga aaatacatga
     4141 cgctggatac tggtgttcgc ttcttcgata acgcgttgac cctgggcact atcataaaat
     4201 acacaggcaa ggctcgtcgc ctgtcgcctg attttgagca ggacgaacat accggcgcaa
     4261 taatcaaaca ggatttgccg cagatcccaa cgattatcga tctctatggt acttacgagt
     4321 acaaccgcaa cctgacactg aaactttcgg tacaaaacct gatgaacaga gattattcgg
     4381 aggcgctgaa taagctcaac atgatgccag gtcttggtga cgagagccac ccagccaatt
     4441 ccgcgcgtgg cagaacatgg atatttggcg gggacattcg tttctgatga caatttccgc
     4501 caggttcaga caatacgttt tctctcttat gtcaatttta ttgcaggaac gaaaaatgaa
     4561 tattttcact ttatccaaag caccgctata cttgttaatt tcactatttt tacccacgat
     4621 ggccatggct atcgatccac ctgaacgcga actttcgcga tttgccctga aaacgaatta
     4681 ccttcagtcc cctgatgaag gcgtctatga actggcgttt gataatgcca gtaaaaaggt
     4741 gtttgcagca gtcaccgatc gtgtaaatcg tgaagccaat aaaggctatc tgtattcgtt
     4801 taattcagat tcgctgaaag tcgaaaataa atacacgatg ccataccggg cattttcgct
     4861 ggcgataaat caggataaac atcagctcta tatcggacac acccagtcag cgtccctgcg
     4921 tatcagtatg tttgacaccc caaccggtaa actggtaaga accagcgaca ggttaagttt
     4981 taaagcggca aacgctgcag attcgcgttt tgagcatttg cgccatatgg tttacagcca
     5041 ggattccgat accctgtttg tgagttatag caatatgctg aaaacggccg agggcatgaa
     5101 gcctctgcat aagctgttaa tgctcgacgg gacgacgctt gccttaaaag gcgaggttaa
     5161 ggatgcttac aaaggtacag cgtatggtct gacgatggat gaaaaaacac agaaaatcta
     5221 cgttggcgga agagattaca tcaacgaaat tgatgcgaaa aatcagacgc tgctgcgtac
     5281 catcccgttg aaagatccga gaccacaaat cacaagtgtg cagaatctgg cggtggactc
     5341 cgcttctgac cgtgcctttg tggtggtatt cgaccatgac gatcgttccg gtacaaaaga
     5401 tggcctctat atttttgact tacgcgacgg taaacagctt ggctatgtgc acacaggagc
     5461 cggagctaac gcggtgaaat acaatccgaa atataacgaa ctgtatgtca ccaacttcac
     5521 tagcggcacc atcagcgtag tggatgccac caaatacagc atcacccgtg aatttaacat
     5581 gccggtctac ccaaaccaga tggtgttgtc ggacgatatg gatacccttt acattggcat
     5641 caaagaaggc tttaaccgcg attgggatcc tgatgtgttt gtggaaggag ctaaagaacg
     5701 tattctgagc attgatttga aaaagtcgtg atcgggggaa aaaacatggg ataaaaactc
     5761 cgttattcca ctaaactggc cggactagga aaagcaaaca tctctgtcct gccggtacgc
     5821 ctgttacgcc gctccatgag gctgaggaat ctccagaaaa cgagacaggc acagcattgt
     5881 acgatcaact gatttgtgcc aataattcaa tgaaatcaca gctatgcctg ttcacgtata
     5941 ggaaattgaa aaactaagcg ataccactgt ccgcgtctta tgcctcgtgc ggtaagctgt
     6001 ttttcacatc acgccggtgt ttttttcttt ctgtggacgg ttttaatact gtaatcggcc
     6061 gttttttata cttaccccga ttcccgggcg cacttatcct gcatcacccc gggatatacc
     6121 tcagcagact gatatcccgc gcgtttttct tcagcccctc cacattcagt cccgcgatgg
     6181 cccggcggta taccatccgg ccgccacaca gcacgcattc gaacgggtca cgactcagga
     6241 actgtttcac catttgtgca tagcacactt tcgccactgg ttccggttta tcctgttttt
     6301 ataacggtaa ttgcagacca tgacaaaccg cagccgtcag gctgcctact cgagtcacaa
     6361 ggctctctgt gtccgatatg ccggcagcgc attacccatg aaactggctg gaacgtacac
     6421 cataaggtga agaaagttat ggggggcggt gaagaattat ctaaccttgt cttgttacat
     6481 ccaaattgcc atcgacagtt acacagttgt gaagccggct ctctcaaaaa gggcttataa
     6541 aggcttgagc ggtgtaccgg gaaaccggta tgcaccgttc ttaggggagg gcagtccagc
     6601 aatgaactgt ccttacccga caaacatcca aaacgaacgg aacgtgctgg aatccgcata
     6661 taacccgttg taaagtgagg aaatggacac ctcacttgct catgagaacg cccgcctgcg
     6721 ggcactgttg cagacgcaac aggacactat ccaccagatg gctgaataca accgcctgct
     6781 ctcacagcgg atggcggctt atgcttccga aatcaaccga ctgaaggcgc tggttgcgaa
     6841 actgcagcgt atgcagttcg gtaaaagccc agaaaaactt cgcgcaaaaa ccgaacggca
     6901 gattccattt tcacgggcga tctacgccac acaggctctg ggttgcagtg actgctccat
     6961 taaggcgatt ttgaactcat aagggaagta acaaaaaaac tgcaaaagta caataattat
     7021 atatggccaa actaacctct attaaaaaaa catcagtttt tcacacttag ttgagcttca
     7081 tgaaaaaatc atcgaggatt tcattgcaga atacacattc cactaactgg aagcactcca
     7141 taagaggaat cagagaaagt atcgtttttt tatagtaaaa ttcattgctg ttcaataaaa
     7201 ttgatataat tattaaatta tggaaataat ttcacaaaaa agattaactt gagttcttaa
     7261 gcatcggatt ttagatattt tgaaatatct ggcatcacat aacatcaaaa gtatataata
     7321 cccttatcta attacatgca gtatattgta tatatactca aaaattgtaa ttcataccct
     7381 actatatctt gtggggaaag atattaatta aaactgtttt catataaggt tcattttatg
     7441 aatatatcag aaacactgaa ctcagcaaat acccaatgca atatagattc tatggataac
     7501 agattacata cattgtttcc aaaagtgaca tcagtgcgaa acgctgcaca acaaactatg
     7561 ccagatgaaa aaaatttaaa agatagtgca aatattatta aagatttctt taggaaaact
     7621 atagcagcac aaagttatag tagaatgttc tctcaaggct ctaactttaa atctttaaat
     7681 atagcaattg atgcaccatc agacgctaaa gcctcattta aggctattga gcaccttgac
     7741 agattatcga agcattatat atctgaaata agggaaaaac ttcatcctct ttctgcagag
     7801 gaactcaatt tgctttcgct aattattaat tctgatttaa tcttcagaca tcaaagtaat
     7861 tctgatttgt ctgataaaat tttaaacatt aagtcattca ataaaattca gtctgaagga
     7921 atatgcacaa aacgaaacac atacgctgat gatataaaaa aaatagctaa tcatgacttt
     7981 gtgttttttg gcgttgaaat ctctagccat cagaaaaaac accccctgaa tacaaaacat
     8041 cacactgttg attttggtgc aaatgcgtat atcattgatc atgactctcc atatggatat
     8101 atgacattaa ccgatcactt tgataatgct attccacctg ttttttacca tgagcaccaa
     8161 tcatttttag ataaattttc agaggttaat aaagaagtta gtcgatacgt acatggaagt
     8221 aaaggaatta tagatgtacc aatattcaat actaaagata tgaagttagg gctcggatta
     8281 tacctgattg actttattag aaaaagtgaa gaccaaagct tcaaggagtt ttgctatgga
     8341 aaaaatcttg cccctgtgga tctggataga atcataaact ttgtttttca gccagagtac
     8401 catataccta ggatggtaag tacagaaaac ttcaaaaaag ttaagattag agaaatatcc
     8461 ttagaggagg ctgttacagc atctaattac gaagaaatta acaagcaggt cactaacaaa
     8521 aaaattgctc tccagactct ttttctttcg attactaatc aaaaagagga tgtcgcctta
     8581 tatatattat ctaattttga gataactaga caagatgtta tttccataaa gcatgagttg
     8641 tatgatattg agtatctact tagcgctcat aattcaagct gtaaagtact tgagtatttt
     8701 atcaataagg ggttggttga tgtaaacaca aagttcaaaa aaactaatag tggggattgt
     8761 atgttggata acgcaataaa atatgagaat gcagaaatga taaaactatt attgaaatat
     8821 ggtgcaacat ctgacaataa atatatttaa tcaaaattga atatcgttta gcaaaaggca
     8881 gtatttgcac aaaatatcga tatattgttt attgtcagta tggctcaatg tgataatagt
     8941 tggaaagttt gatgggtttc gccccgttgt agcggtagtc gagctggaag gtcttcaggc
     9001 actgcttaca gcgatagagc agcccccctg aactggaatg gccgttccgg ataccccctg
     9061 agtttcagag taacggggac aaaccacatc aatctttgcc atcaatcatc caaagggcaa
     9121 agagtacaac aacactaagt ctgcgtcaca acccatcaat gaaaggaata tatacatatg
     9181 ccatcagtaa atttaatccc atcaaggaaa atatgtttgc aaaatatgat aaataaagac
     9241 aacgtctctg ttgagacaat ccagtctcta ttgcactcaa aacaattgcc atatttttct
     9301 gacaagagga gttttttatt aaatctaaat tgccaagtta ccgatcactc tggaaaactt
     9361 attgtctgtc gacacttagc ttcctactgg atagcacagt ttaacaaaag tagtggtcac
     9421 gtggattatc atcactttgc ttttccggat gaaattaaaa attatgtttc agtgagtgaa
     9481 gaagaaaagg ctattaatgt gcctgctatt atttattttg ttgaaaacgg ttcatgggga
     9541 gatattattt tttatatttt caatgaaatg atttttcatt ccgaaaaaag cagagcacta
     9601 gaaataagta catcaaatca caatatggca ttaggcttga agattaaaga aactaaaaat
     9661 gggggggatt ttgtcattca gctttatgat cccaaccata cagcaactca tttacgagca
     9721 gagtttaaca aatttaactt agctaaaata aaaaaactga ctgtagataa ttttcttgat
     9781 gaaaaacatc agaaatgtta tggtcttata tccgacggta tgtctatatt tgtggacaga
     9841 catactccaa caagcatgtc ctccataatc agatggccta ataatttact tcaccccaaa
     9901 gttatttatc acgcgatgcg tatgggattg actgagctaa tccaaaaagt aacaagagtc
     9961 gtacaactat ctgacctttc agacaatacg ttagaattac ttttggcagc caaaaatgac
    10021 gatggtttgt caggattgct tttagcttta caaaatgggc attcagatac aatcttagca
    10081 tacggagaac tcctggaaac ttctggactt aaccttgata aaacggtaga actactaact
    10141 gcggaaggaa tgggaggacg aatatcgggt ttatcccaag cacttcaaaa tgggcatgca
    10201 gaaactatca aaacatacgg aaggcttctc aagaagagag caataaatat cgaatacaat
    10261 aagctgaaaa atttgctgac cgcttattat tatgatgaag tacacagaca gatacccgga
    10321 ctaatgtttg ctcttcaaaa tggacatgca gatgctatac gcgcatacgg tgagctcatt
    10381 cttagccccc ctctcctcaa ctcagaggat attgtaaatt tgctggcctc aaggagatat
    10441 gacaatgttc ccggacttct gttagcattg aataatggac aggctgatgc aatcttagct
    10501 tatggtgata tcttgaatga ggcaaaactt aacttggata aaaaagcaga gctgttagaa
    10561 gcgaaagatt ctaatggttt atctggattg tttgtagcct tgcataatgg atgtgtagaa
    10621 acaattattg cttatgggaa aatacttcac actgcagacc ttactccaca tcaggcatca
    10681 aaattactgg cggcagaagg cccaaatggg gtatctggat taattatagc ttttcaaaat
    10741 aggaattttg aggcaataaa aacttatatg ggaataataa aaaatgaaaa tattacacct
    10801 gaagaaatag cagaacactt ggacaaaaaa aatggaagtg attttctaga aattatgaag
    10861 aatataaaaa gctgaatatt atctcgtggt gatacactga atttgaggta accggctcat
    10921 ttaaaccgtc tggtctgtta cctccggttc cacaaaaata atgtccatca ttttgaagtg
    10981 gacactatcg tatggaatac cggacct
//
LOCUS       DADMJB010000140        10927 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.141, whole genome shotgun sequence.
ACCESSION   DADMJB010000140 DADMJB010000000
VERSION     DADMJB010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10927
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.141"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            260..747
                     /locus_tag="JN078_003215"
                     /pseudo
     CDS             260..747
                     /locus_tag="JN078_003215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341229.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="rtcB domain protein"
     gene            744..1358
                     /locus_tag="JN078_003216"
     CDS             744..1358
                     /locus_tag="JN078_003216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000602105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor H"
                     /protein_id="HAY9042315.1"
                     /translation="MILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETET
                     GRYSDTLRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRFTADE
                     QEQSDAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLL
                     IAWKLEQQQQENSAVLKSQRRMFHHQIERGNPRRTFTGMAFIEG"
     gene            complement(1415..2872)
                     /gene="pepD"
                     /locus_tag="JN078_003217"
     CDS             complement(1415..2872)
                     /gene="pepD"
                     /locus_tag="JN078_003217"
                     /EC_number="3.4.13.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008783788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosol nonspecific dipeptidase"
                     /protein_id="HAY9042316.1"
                     /translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKG
                     FHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDG
                     EWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWL
                     QADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGG
                     EIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDAL
                     KSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRN
                     SDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA
                     KGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIG
                     PTITGPHSPDEQVHIESVGHYWTLLTELLKEIPAK"
     gene            3133..3591
                     /gene="gpt"
                     /locus_tag="JN078_003218"
     CDS             3133..3591
                     /gene="gpt"
                     /locus_tag="JN078_003218"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HAY9042317.1"
                     /translation="MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGA
                     LLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIRE
                     MYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR"
     gene            3683..4927
                     /gene="frsA"
                     /locus_tag="JN078_003219"
     CDS             3683..4927
                     /gene="frsA"
                     /locus_tag="JN078_003219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase FrsA"
                     /protein_id="HAY9042318.1"
                     /translation="MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTI
                     PHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWA
                     TQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEA
                     AQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYF
                     APRGIVMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGA
                     NVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDEA
                     LRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFN
                     PVYRNFDKGLQEITGWIEKRLC"
     gene            4985..5386
                     /locus_tag="JN078_003220"
     CDS             4985..5386
                     /locus_tag="JN078_003220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-binding protein Crl"
                     /protein_id="HAY9042319.1"
                     /translation="MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNV
                     KPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLRE
                     FHEKLRELLTTLNLKLEPADDFRDEPVKLTA"
     gene            complement(5425..6480)
                     /gene="phoE"
                     /locus_tag="JN078_003221"
     CDS             complement(5425..6480)
                     /gene="phoE"
                     /locus_tag="JN078_003221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoporin PhoE"
                     /protein_id="HAY9042320.1"
                     /translation="MKKSTLALVVMGIVASASVQAAEIYNKDGNKLDVYGKVKAMHYM
                     SDNDSKDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGL
                     KYKDLGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFF
                     GVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQN
                     LQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQF
                     DFGLRPSLGYVLSKGKDIEGIGGEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNK
                     LNINNDDIVAIGMTYQF"
     gene            6768..7871
                     /gene="proB"
                     /locus_tag="JN078_003222"
     CDS             6768..7871
                     /gene="proB"
                     /locus_tag="JN078_003222"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HAY9042321.1"
                     /translation="MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHR
                     IVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQML
                     LTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILA
                     GADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKL
                     QAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAG
                     EITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDA
                     LRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR"
     gene            7883..9136
                     /gene="proA"
                     /locus_tag="JN078_003223"
     CDS             7883..9136
                     /gene="proA"
                     /locus_tag="JN078_003223"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HAY9042322.1"
                     /translation="MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILN
                     ANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSG
                     LRLERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQ
                     DALKSCGLPAGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVI
                     TGGIGVCHIYVDESVEIAEALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQ
                     MAESGVTLHADAAALAQLQAGPAKVVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIR
                     EHGTQHSDAILTCDMRNAQRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLH
                     ARGPMGLEALTTYKWIGIGDYTIRA"
     gene            9251..9326
                     /locus_tag="JN078_003224"
     tRNA            9251..9326
                     /locus_tag="JN078_003224"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9284..9286,aa:Thr,seq:cgt)
     gene            complement(9341..10504)
                     /locus_tag="JN078_003225"
     CDS             complement(9341..10504)
                     /locus_tag="JN078_003225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HAY9042323.1"
                     /translation="MSLFRRGEIWYASFTLPNGKRFKQSLGTKDKRQATELHDKLKAE
                     AWRVSKLGEIPDITFEEACVRWLEEKAHKKSLDDDKSRIGFWLQHFAGMQLRDITESK
                     IYSAMQKMTNRRHEENWKLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLRAA
                     EREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDECPEPLKSVVEFALATGLRRSN
                     IINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKES
                     CTKPDGTKAPTVRKMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVL
                     QEMGGWESIEMVRRYAHLAPNHLTEHARQIDSILNPSVPNLSQSRNKERTNDV"
     gene            complement(10381..10815)
                     /locus_tag="JN078_003226"
     CDS             complement(10381..10815)
                     /locus_tag="JN078_003226"
                     /inference="COORDINATES: protein motif:HMM:NF024139.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAY9042324.1"
                     /translation="MGYDSRLDRLATTSWHSFFNNITARGEIMEPYSLTLDEACHFLK
                     ISRPTAINWIRTGRLQATRKDPTKNKSPYLTTRQACIAALQSPLHTVQVSAGDGITEE
                     RKCHSSAEVKYGTPVSHCRTVKDLNSLLEQRTKGRRQNSMTS"
     gene            complement(10731..>10927)
                     /locus_tag="JN078_003227"
     CDS             complement(10731..>10927)
                     /locus_tag="JN078_003227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000206055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042325.1"
                     /translation="LEVEPDERESYELFMEKHFGGLVDSRRAKNGDNEYMAWDMTLGW
                     IVWQQRAGIHFSTISQQEVK"
BASE COUNT         2598 a         2699 c         2824 g         2806 t
ORIGIN      
        1 ctattagcgg ttaccagcgc cccaccagac ccggtgacat caccccccgg atcatggacg
       61 actgggggca gtaatcatgc cgggtctggc tggctaacac cccattataa ggggtacgaa
      121 taaagtaacg gggcagtcta ttttacagcg gcatattgcc tcgttctcgc atcatggttt
      181 gcctcaaggc agtgacgacg cgctacggta tattgcggaa catgacgatg cgctggcgtt
      241 tgcgtgtatt aatcgccaga tgatcgcttt gcgcataatg caacaagtta aggccacggg
      301 aagtccggtt ctggatgtgg cgcataactt tgttagcgcg tgtcaaatcg gcgtcaacag
      361 ggctggttgc atcgtaaagg tgccacgccg gatgacaacg gtctggtgat tattcccggt
      421 tcacgtggtg attactcctg gattgtacag cctgttgcga acgaaaaaac gctccactcg
      481 ctggcgcatg gggcagggcg taaatggggg cgcaccgagt gtaaatggcg tctggcagcg
      541 aaatacacgg tgacgcaact ctcgcggact gaacttggca gtcggataat ttgtcgcgat
      601 aaacaactca tctttgaaga agcgccacaa gcctataaat cggctgaaag cgtggtgcaa
      661 tgtctggtgc aggccggttt aattattcct gtcgcgcggc tgcgtccggt gctaacgctc
      721 aaaaacagtg gagggaaaaa aggatgatct tgctacaact ctcctcagcg caggggccgg
      781 aagaatgttg tctcgcagtg aaaaaggcgc tggacaggct aattaaagaa gctgcccgac
      841 aagacgtcgc ggtaacggtg ttggaaacag aaacgggccg ctactctgac acgctgcgtt
      901 cagctctggt ttctctggat ggcgataacg catgggcatt aagcgaaagc tggtgtggca
      961 ctattcagtg gatttgtccg agtccgtatc ggcctcatca tgggcgcaaa aactggtttc
     1021 tgggcattgg gcgttttacc gctgatgagc aggagcaatc cgatgcgatc cggtatgaga
     1081 cgctgcgttc gtcggggccg ggcggtcaac atgtcaataa aaccgactcg gcggtacgcg
     1141 ccacgcattt ggcatccggt attagcgtga aggttcagtc agagcgtagt cagcatgcta
     1201 acaagcggct ggcacgattg ctgattgcct ggaagctgga gcagcagcaa caggaaaata
     1261 gcgcggtgct gaaatcgcag cggcgaatgt tccatcacca gattgaacgt ggcaacccga
     1321 gacggacatt tacagggatg gcttttatcg aaggataatg aaggatgaaa ctgccggaag
     1381 gcgattaaac gccatccggc agcaaatcaa ataattactt cgccggaatt tctttcagca
     1441 gttcagtcag cagtgtccag taatgaccta cgctttcgat gtgaacttgc tcatccggag
     1501 agtgtggacc ggtgatagtt ggcccgatag aaaccatgtc catttccgga tacggttttt
     1561 tgaacagacc acattccagg cccgcgtgga taatctggat gttcggcgtc ttgttgaaca
     1621 ggcgctgata ggtttcacgt accagatgca tcaccggaga attagcgtcc ggctgccagc
     1681 caggatatgc gcctttcgct tcggttttcg cgccagccag tttacccagc gaatccagca
     1741 tgctcaccac gtagtcttta ccgctgtcga tcagtgaacg gatcaggcag tgaatttcta
     1801 cgttattgtc agtcatggtc accacaccga cgttcaggga ggtttcaacc acacctttgg
     1861 ctacatcgga gttgcggatc acaccgttcg gggtggcgtt cagcagacga ataaaggtat
     1921 cgcgagattt cgcaatcagg gcagctttat cgttcgctac agagtccagc aacaaggcca
     1981 gatttttctc tttctctgcc agctcgtttt tcaggatctc ctgataggta ttcaccagag
     2041 atttcagtgc gtcgacttta tcagctgcga cagcaatggt cgcaaaggct tcacgcggga
     2101 tggcgttacg cagtgtgccg ccgttgaaat cgataaggcg caggtccagt tcttctgcat
     2161 gacccgccag gaagcgcacc agcagtttgt tggcattacc caggccaacg tggatttcac
     2221 cgccggagtg accgcctttc agacctttta aggttaactt gaaggtttca aaaccagctg
     2281 gaaccgcttc acgatctaaa tgcaggttgg aggtgaagtc gatacccccc gcacaaccca
     2341 tgtagatttc accttcttct tcggagtcgg tgttaatcag aatatcagcc tgcaaccagt
     2401 tgctctgtaa gccaaaagca ccgtccatac cggcttcttc ggtcatggtc agcagcactt
     2461 ccagcggacc gtgaaccacg ttttcgtcag ccagaaccgc cagtgcagag gccataccaa
     2521 tgccgttatc cgcacccagc gtggtgccgc gcgctttaac ccattcgcca tcaatataag
     2581 gctggatagg atctttcgtg aagtcatgca cggtgtcgtt atttttctgc ggcaccatat
     2641 cgaggtgggc ctgtaagacg accggtttac gattttccat acctgcggta gcaggtttac
     2701 gaatcaggat attacctacc tgatcgcgtt cgacatggaa acctttctct tttgcccaac
     2761 caacaatgta ttcagcgagt tgctcttcat gataggacgg gtgcggaata gaacagattt
     2821 tggcaaaaat atcccacagc ggctgtggag ataattgaga cagttcagac acgttaagtc
     2881 tccttgtcga tcacccgcaa aacagtattg caggtcacag ggttagcaga aaatgttgtc
     2941 aacacaagac aggcttgcga gatatgtttg agaataccac tttatcccgc gtcagggaga
     3001 ggcagtgcgt aaaaagacgc ggactcatgt gaaatactgg tttttagtgc gccagatctc
     3061 tataatctcg cgcaacctat tttcccctcg aacacttttt aagccgtaga taaacaggct
     3121 gggacacttc acatgagcga aaaatacatc gtcacctggg acatgttgca gatccatgca
     3181 cgtaaactcg caagccgact gatgccttct gaacaatgga aaggcattat tgccgtaagc
     3241 cgtggcggtc tggtaccggg tgcgttactg gcgcgtgaac tgggtattcg tcatgtcgat
     3301 accgtttgta tttccagcta cgatcacgac aaccagcgag agcttaaagt gctgaaacgc
     3361 gcagaaggcg atggcgaagg cttcatagtt attgatgacc tggtggatac cggtggtact
     3421 gctgttgcga ttcgtgaaat gtatccaaaa gcgcactttg tcaccatctt cgcaaaaccg
     3481 gctggtcgtc cgctggttga tgactatgtt gttgatattc cgcaagatac ctggatcgaa
     3541 cagccgtggg atatgggcgt cgtattcgtc ccgccaatct ccggtcgcta atcttttcaa
     3601 cgcctggcac tgccgggcgt tgttcttttt aacttcaggc aggttacaat agtttccagt
     3661 aagtattctg gaggctgcat ccatgacaca ggcaaacctg agcgaaaccc tgttcaaacc
     3721 ccgctttaaa catcctgaaa cctcgacgct agtccgccgc tttaatcacg gcgcacaacc
     3781 gcctgtgcag tcggctcttg atggtaaaac catccctcac tggtatcgca tgattaaccg
     3841 tctgatgtgg atctggcgcg gtattgaccc acgtgaaatc ctcgacgtcc aggcacgtat
     3901 tgtgatgagc gatgctgaac gtaccgacga tgatttatac gatactgtga ttggctaccg
     3961 tggtggcaac tggatttatg agtgggccac ccaggcgatg gtgtggcaac aaaaagcctg
     4021 tgcggaagaa gatccgcaac tcagtggtcg acactggctg catgcggcta cgttgtacaa
     4081 cattgccgcc tatcctcatc tgaaaggaga tgacctggcc gagcaagcgc aggctttatc
     4141 aaaccgcgcc tatgaagagg ccgcccagcg tctgccgggc acgatgcggc agatggagtt
     4201 taccgtaccc ggcggtgcgc ccatcaccgg ctttttgcat atgccgaaag gcgatggccc
     4261 gttcccgaca gtattaatgt gtggtggtct ggatgcgatg cagacggact attacagcct
     4321 gtatgaacgt tattttgcgc cgcgcggcat tgtgatgctg actattgata tgccgtcggt
     4381 gggcttttct tcaaaatgga agctcaccca ggactccagc ctgttgcatc agcacgtctt
     4441 aaaggcgctg cctaacgtac cgtgggtgga tcacactcgc gtcgcggcct ttggtttccg
     4501 tttcggcgct aacgttgccg tgcgtctggc atatcttgaa tcgccgcgtc tgaaagcggt
     4561 tgcctgtctt ggtccggtag ttcataccct gttgagtgat tttaagtgcc agcaacaggt
     4621 gccggaaatg tatcttgacg ttctggcgag tcgtttgggg atgcatgatg cttccgacga
     4681 agcgttacgc gtggagctga atcgctattc attaaaagtg caaggattgc tgggacgtcg
     4741 ctgcccaacg ccaatgttat caggctactg gaagaacgat ccgttcagcc cggaagagga
     4801 ctcacgctta atcacctcat catctgctga cggtaaatta ttagagatcc catttaaccc
     4861 ggtgtatcgg aattttgaca aaggtcttca ggaaatcacc ggctggatcg aaaaacgctt
     4921 gtgttaaaaa tttgctaaat tttgccaatt tggtaaaaca gttgcatcac aacaggagat
     4981 agcaatgacg ttaccgagtg gacacccgaa gagcagattg atcaaaaaat ttaccgcact
     5041 aggcccgtat attcgtgaag gtaagtgcga agataatcga ttctttttcg attgtctggc
     5101 tgtatgcgtc aacgtgaaac cggcaccgga agtgcgtgaa ttctggggct ggtggatgga
     5161 gctggaagcg caggaatccc gttttaccta cagctaccag tttggtctgt tcgataaagc
     5221 aggcgactgg aagagtgttc cggtaaaaga tactgaagtg gttgaacgac tggagcacac
     5281 cctgcgtgag tttcacgaga agctgcgtga actgctgacg acgctgaatc tgaagctgga
     5341 accggcggat gattttcgtg acgagccggt gaagttaacg gcgtgagtga aatgtgccgg
     5401 atgcatcaca tccggcaata tctattaaaa ctgatacgtc atcccaatcg cgacaatatc
     5461 atcattatta atattcaatt tgttatcgct atccagttgg ttgattttat aatcaacaaa
     5521 tgctgacata tttttgttga aataatacgt agcaccgacg tcgatataat taaccagatc
     5581 ttcaccaccg atgccctcaa tatctttccc tttcgataag acataaccca gcgatggacg
     5641 cagaccaaag tcaaactggt attgagcgac cgcttcaaag ttctgtgtct tattggcaaa
     5701 gccgccagtt attggcgtca ttttgcgagt ttcagaatag aaagttgcca gataaatatt
     5761 attggcatcg tatttcagac ctgttgccca tgcttctgca cgcttgcctg tgccacggct
     5821 ttgcaggttc tgctcgttgg tgcgatctga gttggtatag gccccactaa tggcgaaatc
     5881 gctgccgcca aagtcatatg tcaatgacgt gccgaagcca tcgccgtttt gctttttaac
     5941 gtcgcggttt tcgtttttcc cttgatattg cagggttaag ttcaggccat cgataacgcc
     6001 gaagaagtcg gtgttccgat acgtcgccag accgctggcg cgtttggtca taaagttgtc
     6061 ggtctgcgcc gaggagtcgc caccaaattc cggaaacata tcggtccagg cttccacgtc
     6121 atacaacgcg cccaggttac gaccataatc gaaagaaccc aaatctttat atttcaaccc
     6181 ggcaaaagcg agacgcgttt tttgctgtgc agtatcactc tctgctttat taccggcaaa
     6241 ctctgcttcc caacgaccat aaccagtcag ttgatcgtta atttgtgttt cgcctttaaa
     6301 accaaaacgg atataactct ggtcgccatc tttactgtcg ttatcactca tataatgcat
     6361 ggctttaact ttgccataga catccagttt attaccgtct ttgttatata tttctgcggc
     6421 ctgtacggat gcagatgcca caatgcccat caccactaat gccagagtgc tctttttcat
     6481 tttcattcct gattttaatt aacgcgcgaa tattcagcgg gagagccccg ttgaaaacag
     6541 gaaagttttt aacctgagat tgttaaagat atattacaga ttaataatat tcttaaaatg
     6601 tggtaattta ttaaatctgt aataaaagcg taaacaactg ccgctaggct tgctgatccc
     6661 gcgcaacaaa acgccatgct ttgctcgcag atggttggca accgacgaca gtcctgctaa
     6721 aacgttcgtt tgatatcatt tttcctaaaa ttgaatggca gagaatcatg agtgacagcc
     6781 agacgctggt ggtaaaactc ggcaccagtg tgctaacagg cggatcgcgc cgtctgaacc
     6841 gtgcccatat cgttgaactt gttcgccagt gcgcgcagtt acatgccgcc gggcatcgga
     6901 ttgttattgt gacgtcgggc gcgatcgccg ccggacgtga gcacttgggt tacccggaac
     6961 tgccagcgac tatcgcctcg aaacaactgc tggcagcggt agggcagagt cgactgattc
     7021 aactgtggga acagctgttt tcgatttatg gcattcacgt cgggcaaatg ctgctgaccc
     7081 gtgctgatat ggaagaccgt gaacgcttcc tgaacgcccg cgacaccctg cgtgcgttgc
     7141 tcgataacaa tatcgttccg gtaatcaatg agaacgatgc tgtcgctacg gcagagatta
     7201 aagtcggcga taacgataac ctttctgcgc tggcggcgat tctggcgggt gccgataaac
     7261 tgttgctgct gaccgatcaa aaaggtttgt ataccgctga cccgcgcagc aatccgcagg
     7321 cagaactgat taaagatgtt tacggcattg atgacgcact gcgcgcgatt gccggtgaca
     7381 gcgtttcagg cctcggaact ggcggcatga gtaccaaatt gcaggccgct gacgtggctt
     7441 gccgtgcggg tatcgacacc attattgccg cgggcagcaa gccgggcgtt attggtgatg
     7501 tgatggaagg catttccgtc ggtacgctgt tccatgccca ggcgactccg cttgaaaacc
     7561 gtaaacgctg gattttcggt gcgccgccgg cgggtgaaat cacggtagat gaaggggcaa
     7621 ctgccgccat tctggaacgc ggcagctccc tgttgccgaa aggcattaaa agcgtgactg
     7681 gcaatttctc gcgtggtgaa gtcatccgca tttgcaacct cgaaggtcgc gatatcgccc
     7741 acggtgtcag tcgttacaac agcgatgcat tacgccgtat tgccggacac cactcgcaag
     7801 aaattgatgc aatactggga tatgaatacg gcccggttgc cgttcaccgt gatgacatga
     7861 ttacccgtta aggagctggc cgatgctgga acaaatgggc attgccgcga agcaagcctc
     7921 gtataaatta gcgcaactct ccagccgcga aaaaaatcgc gtgctggaaa aaatcgccga
     7981 tgaactggaa gcacaaagcg aaatcattct caacgctaac gcccaggatg ttgctgacgc
     8041 gcgagccaat ggccttagcg aagcgatgct tgaccgtctg gcactgacgc ccgcacggct
     8101 gaaaggcatt gccgacgatg tacgtcaggt gtgcaacctc gccgatccgg tggggcaggt
     8161 aatcgatggc ggcgtactgg acagcggcct gcgtcttgag cgtcgtcgcg taccgctggg
     8221 agttattggc gtgatttatg aagcgcgccc gaacgtgacg gttgatgtcg cttcgctgtg
     8281 cctgaaaacc ggtaatgcgg tgatcctgcg cggtggcaaa gaaacgtgtc gcactaacgc
     8341 tgcaacggtg gcggtgattc aggacgccct gaaatcctgc ggcttaccgg cgggtgccgt
     8401 gcaggcgatt gataatcctg accgtgcgct ggtcagtgaa atgctgcgta tggataaata
     8461 catcgacatg ctgatcccgc gtggtggcgc tggtttgcat aaactgtgcc gtgaacagtc
     8521 gacaatcccg gtgatcacag gtggtatagg cgtatgccat atttacgttg atgaaagtgt
     8581 agagatcgct gaagcattaa aagtgatcgt caacgcgaaa actcagcgtc cgagcacatg
     8641 taatacggtt gaaacgttgc tggtgaataa aaacatcgcc gatagcttcc tgcccgcatt
     8701 aagcaaacaa atggcggaaa gcggcgtgac attacacgca gatgcagctg cactggcgca
     8761 gttgcaggca ggccctgcga aggtggttgc tgttaaagcc gaagagtatg acgatgagtt
     8821 tctgtcatta gatttgaacg tcaaaatcgt cagcgatctt gacgatgcca tcgcccatat
     8881 tcgtgaacac ggcacacaac actccgatgc gatcctgacc tgcgatatgc gcaacgccca
     8941 gcgttttgtt aacgaagtgg attcgtccgc tgtttacgtt aacgcctcta cgcgttttac
     9001 cgacggcggc cagtttggtc tgggtgcgga agtggcggta agcacacaaa aactccacgc
     9061 gcgtggccca atggggctgg aagcactgac cacttacaag tggatcggca ttggtgatta
     9121 caccattcgt gcgtaaataa aaccgggtga tgcaaaagta gccatttgat tcacaaggcc
     9181 attgacgcat cgcccggtta gttttaacct tgtccaccgt gattcacgtt cgtgaacatg
     9241 tcctttcagg gccgatatag ctcagttggt agagcagcgc attcgtaatg cgaaggtcgt
     9301 aggttcgact cctattatcg gcaccattta aatcaataag ttacacatca ttagtacgtt
     9361 ccttatttct tgactgggac aaatttggga ccgatgggtt cagaatcgag tctatttgcc
     9421 gtgcgtgttc ggtaaggtga ttaggtgcga ggtgagcata tcgacgaacc atttcgatag
     9481 actcccagcc tcccatttcc tgtaacactg ataacgggac tccggcttga accagccaac
     9541 ttgcccaggt gtgtctcaag tcgtgaaatc tgaaatcatc aatacctgct cgtctcagcg
     9601 ccgctttcca ggctgtgttt gcgtcatacc gcatcttcct gactgttggc gctttcgttc
     9661 cgtctggttt ggtacagctt tccttataca caaataccca acggtgatga ttcccgattt
     9721 gttttttcaa tacgcgacat gcagtatcat tcagcgcaac gccaattgcg cggtttgatt
     9781 tactctcttc cgggtttatc catgccaccc ggcgctgcat gtctatttgt tgccattcaa
     9841 ggttgatgat gttcgagcgt cttaagcctg ttgcaagtgc aaattcaaca acagacttta
     9901 atggctccgg acattcatca atcagccttt gtgcttcatg aggctccagc cagcggatcc
     9961 gtttattctt tggttgaggc actttaataa ttggtgcctt atccagcatt ttccattcac
    10021 gctctgcggc tcttagcagg gcctttataa atgaaagatg cgtagccttc gttgcaacgg
    10081 acgctggttt tggcgtgtat tctggaacag gtttcccttt ttttctgcat gcttctgccc
    10141 tgagtttcca gttttcctca tgacgccggt tcgtcatttt ctgcattgct gaataaattt
    10201 ttgattcagt aatgtctctt agttgcattc ctgcgaaatg ttgaagccag aatccgatcc
    10261 ggcttttgtc atcgtccagt gattttttat gtgctttctc ttcaagccac ctgacacacg
    10321 cttcctcgaa cgttatatca ggaatttcac caagtttgct gacccgccat gcttcagcct
    10381 ttagcttgtc atggagttct gtcgcctgcc ttttgtcctt tgttccaaga gactgtttaa
    10441 atcttttacc gttcggcaat gtgaaactgg cgtaccatat ttcacctctg cggaagagtg
    10501 acattttctt tcctctgtta tgccatcacc cgcgctcacc tggacagtat gcagcggaga
    10561 ctgaagcgcc gcaatgcagg cttgtcgtgt tgtgaggtaa ggagatttat tcttagtggg
    10621 atctttgcgt gttgcctgca gacgccctgt gcgtatccag ttaatggcag tcggtctgga
    10681 tatcttgaga aaatgacagg cctcatctag cgtgaggctg tatggttcca ttatttcacc
    10741 tcttgctgtg atattgttga aaaatgaatg ccagctcgtt gttgccagac gatccaaccg
    10801 agagtcatat cccatgccat gtattcgtta tcgccgtttt ttgctctccg actatctact
    10861 aagccaccga aatgtttttc cataaataat tcataggatt cgcgttcatc tggctctact
    10921 tccagag
//
LOCUS       DADMJB010000141        10903 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.142, whole genome shotgun sequence.
ACCESSION   DADMJB010000141 DADMJB010000000
VERSION     DADMJB010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10903)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10903)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10903
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.142"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            14..184
                     /locus_tag="JN078_003228"
     CDS             14..184
                     /locus_tag="JN078_003228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001429095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lycopene biosynthesis protein"
                     /protein_id="HAY9042326.1"
                     /translation="MLQEKEYPITIYNIAPFNKNLWSLLKSSQECPPGESKITNKCLH
                     NSCIIKICSICY"
     gene            complement(252..1502)
                     /gene="icd"
                     /locus_tag="JN078_003229"
     CDS             complement(252..1502)
                     /gene="icd"
                     /locus_tag="JN078_003229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000444467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HAY9042327.1"
                     /translation="MESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPA
                     MLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIREYRVAIKGP
                     LTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIY
                     AGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAI
                     ANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIV
                     IKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECAL
                     FEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVTYD
                     FERLMEGAKLLKCSEFGEAIIENM"
     gene            1674..2327
                     /gene="rluE"
                     /locus_tag="JN078_003230"
     CDS             1674..2327
                     /gene="rluE"
                     /locus_tag="JN078_003230"
                     /EC_number="5.4.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309634.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2457) synthase RluE"
                     /protein_id="HAY9042328.1"
                     /translation="MRQFIISENTMQKTSFRNHLVKRFSSQRSTRRKPENQPTRVILF
                     NKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPG
                     KRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER
                     KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYTLDNLANGEWREATE"
     gene            2337..2798
                     /gene="nudJ"
                     /locus_tag="JN078_003231"
     CDS             2337..2798
                     /gene="nudJ"
                     /locus_tag="JN078_003231"
                     /EC_number="3.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase NudJ"
                     /protein_id="HAY9042329.1"
                     /translation="MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETL
                     VEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDID
                     CCRWVSAEEILKASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTKGVI"
     gene            2852..3958
                     /gene="mnmA"
                     /locus_tag="JN078_003232"
     CDS             2852..3958
                     /gene="mnmA"
                     /locus_tag="JN078_003232"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HAY9042330.1"
                     /translation="MSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDD
                     GEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC
                     NKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSH
                     EQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQP
                     GKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQG
                     HEHPRLMSVGLIAQQLHWVDREPFTGTMRCSVKTRYRQTDIPCTVKALDDDRIEVIFD
                     EPVAAVTPGQSAVFYNGEVCLGGGIIEQRLPLPV"
     gene            3994..4635
                     /gene="hflD"
                     /locus_tag="JN078_003233"
     CDS             3994..4635
                     /gene="hflD"
                     /locus_tag="JN078_003233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high frequency lysogenization protein HflD"
                     /protein_id="HAY9042331.1"
                     /translation="MAKNYYDITLALAGICQSARLVQQLAHQGHCDADALHVSLNSII
                     DMNPSSTLAVFGGSEANLRVGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLSSA
                     KGALDTLGNRINGLQRQLEHFDLQSETLMSAMAAIYVDVISPLGPRIQVTGSPAVLQS
                     PQVPAKVRATLLAGIRAAVLWHQVGGGRLQLMFSRNRLTTQAKQILAHLTPEL"
     gene            4639..6009
                     /gene="purB"
                     /locus_tag="JN078_003234"
     CDS             4639..6009
                     /gene="purB"
                     /locus_tag="JN078_003234"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006819529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HAY9042332.1"
                     /translation="MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWL
                     QKLAAHAAIKEVPAFAADAIGYLDAIVANFSEEDAARIKTIERTTNHDVKAVEYFLKE
                     KVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGIKDLAVQ
                     YRDIPLLSRTHGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHI
                     AAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVW
                     GYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQ
                     RDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTV
                     MRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEKARLKAMTPANYIGRAIT
                     MVDELK"
     gene            6177..6848
                     /gene="phoP"
                     /locus_tag="JN078_003235"
     CDS             6177..6848
                     /gene="phoP"
                     /locus_tag="JN078_003235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator PhoP"
                     /protein_id="HAY9042333.1"
                     /translation="MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHL
                     PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKP
                     FHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMET
                     LIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY
                     LFELR"
     gene            6848..8308
                     /gene="phoQ"
                     /locus_tag="JN078_003236"
     CDS             6848..8308
                     /gene="phoQ"
                     /locus_tag="JN078_003236"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     PhoQ"
                     /protein_id="HAY9042334.1"
                     /translation="MKKLLRLFFPLSLRVRFLLATAAVVLVLSLAYGMVALIGYSVSF
                     DKTTFRLLRGESNLFYTLAKWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDV
                     PWLMKMIQPDWLKSNGFHEIEADVNDTSLLLSGDHSIQQQLQEVREDDDDAEMTHSVA
                     VNVYPATSRMPKLTIVVVDTIPVELKSSYMVWSWFIYVLSANLLLVIPLLWVAAWWSL
                     RPIEALAKEVRELEEHNRELLNPATTRELTSLVRNLNRLLKSERERYDKYRTTLTDLT
                     HSLKTPLAVLQSTLRSLRSEKMSVSDAEPVMLEQISRISQQIGYYLHRASMRGGTLLS
                     RELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACK
                     YCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAR
                     EITEQYEGKIVAGESMLGGARMEVIFGRQHSAPKDE"
     gene            8384..9505
                     /locus_tag="JN078_003237"
     CDS             8384..9505
                     /locus_tag="JN078_003237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309600.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HAY9042335.1"
                     /translation="MEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLA
                     MESEVDSRLVSHQDGKWQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRE
                     LPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHPDLL
                     QVDPFEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYV
                     LQRELGGNYYSDPDVPPRAHPADVLPQEMDKLREMMLELINQPEHFKQWFGEFISQSR
                     HELDIAPPEPPYQPDEIYDALKQGDVLVRLGGLRVLRIGDDVYANGEKIDSPHRPALD
                     ALASNIALTAENFGDALEDPSFLAMLAALVNSGYWFFEG"
     gene            complement(9554..10780)
                     /gene="pepT"
                     /locus_tag="JN078_003238"
     CDS             complement(9554..10780)
                     /gene="pepT"
                     /locus_tag="JN078_003238"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HAY9042336.1"
                     /translation="MDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEE
                     MGLINVTLSEKGTLMATLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGD
                     IALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKNI
                     PHGDIRVAFTPDEEVGKGAKHFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIV
                     GNNVHPGTAKGVMVNALSLAARIHAEVPADESPEMTEGYEGFYHLAGMKGTVERADMH
                     YIIRDFDRKQFEARKCKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILD
                     IAQQAMRDCDIEPELKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEK
                     AVQVIVRIAELTAQRK"
BASE COUNT         2695 a         2788 c         2726 g         2694 t
ORIGIN      
        1 taagcttggt attatccttc aggaaaaaga atatcctatt actatttata acattgcacc
       61 attcaacaag aatttatgga gtttactcaa aagcagtcaa gagtgtcctc caggagaaag
      121 caaaataaca aataaatgtt tacataatag ttgcattata aaaatatgct cgatatgcta
      181 ttaataatat ccacataaat aaaacaacgg gcgtgttata cgcccgtttc aatatttaac
      241 tcatggagag attacatgtt ttcgatgatc gcttcaccaa actctgaaca tttcagcagc
      301 ttagcgcctt ccatcagacg ttcaaagtca taagttacgg ttttcgcgtt gatagcacct
      361 tccatacctt taacaattaa atcagccgct tcagtccacc ccatatggcg cagcatcatc
      421 tcagcggaga ggatgataga gcctggattt actttgtcct gaccggcgta tttcggcgca
      481 gtaccgtggg tggcttcaaa cagggcgcat tcgtcaccga tgtttgctcc aggagcgata
      541 ccgataccgc caacctgcgc tgccagggcg tcagaaatgt agtcaccgtt caggttcata
      601 caggcgataa catcatattc agccggacgc agcaggatct gttgcaggaa tgcatcagca
      661 atcacgtctt taatgacgat ctctttgccg gtgttcgggt ttttaacttt cagccacggg
      721 ccgccgtcga tcagttcacc gccaaactct tcacgcgcca gctggtagcc ccagtcttta
      781 aacgcgcctt cggtgaactt catgatgttg cctttgtgca ccagagtcac agagtcacga
      841 tcgttagcaa ttgcgtattc gatcgctgca cgaaccagac gtttggtgcc ttcttccgaa
      901 cacggcttaa taccgatacc acaatgttcc gggaagcgaa ttttcttcac ccccatctct
      961 tcacgcagga atttaatcac tttctcggcg tcggcagagt ctgctttcca ttcgataccc
     1021 gcataaatgt cttccgagtt ttcacggaag ataaccatat cggtcagttc agggtgttta
     1081 accgggcttg gagtgccctg atagtaacgt accggacgca ggcagatgta gagatccagt
     1141 tcctggcgca gggcaacgtt cagagagcga ataccgccac caacaggagt ggtcagcgga
     1201 cctttaatgg caacgcgata ttcacgaatc agatcaaggg tttcagcagg cagccagaca
     1261 tcctgaccat aaacctgtgt ggatttttca ccggtgtaaa tttccatcca ggagatttta
     1321 cgctcgcctt tataggcttt ctcgactgca gcgtcgacca ctttcagcat ggctggggtt
     1381 acatctacac cgattccatc accttcaatg taagggataa tcggattttc aggaacgttg
     1441 agtttgccgt tttgcagggt gatcttcttg ccttgtgccg gaacaactac tttactttcc
     1501 attcacctct ccttcgagcg ctactggttt gctcgtctgc caccacgttg catatgcgtt
     1561 tgcgtcctgc gatacggatg ctttagagca attttttgtt aatgatttgt aattggcttg
     1621 tcaatactac cctattgttt gccgtcatga aagatgcgcg ttattaggct ataatgcggc
     1681 aattcataat ctctgaaaat accatgcaaa aaacttcttt tagaaatcac ctggttaagc
     1741 gattcagctc gcaacgttct accaggcgta aacctgaaaa ccagcccacg cgtgtgatcc
     1801 tgttcaataa accctacgat gttcttccgc agttcaccga tgaagccgga cgcaaaacat
     1861 taaaagaatt catcccggtt cagggcgttt atgcagcagg tcgtcttgac cgcgatagcg
     1921 aagggttact ggtgctgacc aataacggcg cgttgcaggc gcgtttaacc cagccgggca
     1981 aacgcaccgg gaaaatctat tatgtgcagg tggaaggtat tcccacacaa gacgcacttg
     2041 aagccttgcg caatggcgta accttaaatg atggccctac cctgcccgcc ggcgcggagc
     2101 tggttgacga acctgcgtgg ttatggccgc ggaatccacc aattcgtgaa cgcaaaagta
     2161 ttcccaccag ctggctgaag atcaccttat atgaaggacg taatcgccag gtgcgccgca
     2221 tgaccgccca tgttggtttc cccacgctgc gactgattcg ttatgcgatg ggtgattaca
     2281 ctttggataa ccttgccaat ggcgaatggc gagaagcaac agaataagga tgcacaatgt
     2341 ttaaaccaca cgttaccgtt gcttgcgtag tgcacgcaga gggtaaattt ttagtcgttg
     2401 aagagacgat taatggtaaa gcgttatgga accaacctgc cgggcatctg gaagccgatg
     2461 aaaccttagt ggaagctgcc gcccgtgagc tatgggaaga aaccggcatc agcgcgcaac
     2521 cgcaacactt tattcgtatg catcagtgga ttgcgccaga taaaacgccg tttttgcgtt
     2581 tcctctttgc cattgagctt gagcaaatat gcccgaccca gcctcatgac agcgatatcg
     2641 actgctgtcg ttgggtcagc gccgaagaaa ttttaaaggc gtcaaatctt cgttcgccgc
     2701 tggtggcgga aagtatccgt tgttatcaaa gcgggcaacg ctatccgctg gagatgattg
     2761 gcgattttaa ctggcctttt acaaagggtg tcatctaaaa ggctgcgtga tagaatacgc
     2821 cgccttgaag ttcaatgtcg tgagtgatcc aatgtctgaa accgcaaaaa aagtaatcgt
     2881 cggcatgtcc ggcggtgtcg attcctccgt ttctgcctgg ctgttgcaac aacagggata
     2941 tcaggttgaa ggcctgttta tgaagaactg ggaagaagac gacggtgagg aatattgcac
     3001 agcggcagcg gatctggctg atgcccaagc tgtctgcgac aagctcggca ttgaactgca
     3061 caccgttaac tttgctgccg agtactggga caacgtcttc gaactgttcc ttgccgaata
     3121 taaagccggt cgcacgccga atccggatat tctgtgcaac aaagagatca aatttaaagc
     3181 tttcctcgaa tttgccgccg aagatttagg tgccgattat atcgctaccg gtcattacgt
     3241 acgtcgggcc gatgtcgatg gcaagagccg cctgctgcgt ggtctggaca gcaataaaga
     3301 ccagagctac ttcctttata cgctcagcca tgagcagatt gcgcaaagcc tgttcccggt
     3361 cggcgaactg gaaaaaccgc aggtgcgtaa gattgctgaa gatcttggtc tggtcaccgc
     3421 gaagaaaaaa gactctaccg gcatttgctt cattggcgaa cgtaaattcc gcgagttcct
     3481 gggccgttat ctcccggcgc aaccgggcaa aatcattacc gtcgatggcg atgaaattgg
     3541 tgagcaccag gggctgatgt atcacactct cggtcagcgt aaaggtctgg gtatcggtgg
     3601 caccaaagaa ggcaccgaag aaccgtggta tgtggtggac aaagacgtcg aaaacaacat
     3661 tctggttgtt gcgcagggcc atgaacaccc gcggctgatg tctgtcgggt tgattgccca
     3721 gcagttgcac tgggtcgatc gcgaaccatt caccggtact atgcgttgct cggtaaaaac
     3781 ccgctatcgc cagaccgata tcccttgcac cgtcaaggcg ctggacgatg atcgcattga
     3841 agtgattttc gatgaaccgg ttgccgccgt gacgccgggc cagtctgccg tcttctataa
     3901 cggtgaagtg tgcctcggtg gcggtattat tgagcagcgt ctgccgctgc cggtctgatt
     3961 attatcttta cttaaaacaa ggaagcagtg aacgtggcaa agaattacta tgacatcacc
     4021 ctcgccctgg ccggtatttg tcagtcggca cgcctggtgc aacaactcgc tcaccagggg
     4081 cattgtgatg ccgatgcgct acacgtctca ctcaacagta ttattgatat gaaccccagc
     4141 tcgacgctgg cggtttttgg cggtagcgaa gccaacctgc gcgtcgggct ggaaaccctg
     4201 ctcggcgtgc tcaatgccag cagtcgccag ggcttaaacg ccgaattaac ccgctacaca
     4261 ctcagcttga tggtgcttga gcgcaaactc tcctcagcga aaggcgcgct cgacactctg
     4321 ggcaaccgga tcaacggcct gcaacgccag ctcgaacact tcgatttaca gtccgaaacg
     4381 ctgatgagcg cgatggctgc tatctatgtt gatgtgatca gcccgcttgg cccgcgcatt
     4441 caggtcaccg gttcccctgc tgtactgcaa agcccacaag tgccggcgaa agttcgcgca
     4501 accctgctgg caggcattcg cgccgccgtg ctctggcacc aggtcggcgg cggacgtctg
     4561 caactgatgt tttctcgtaa tcgcctgacc actcaggcaa aacaaattct tgctcattta
     4621 accccggagt tgtgatctat ggaattatcc tcactgaccg ccgtttcccc tgtcgatgga
     4681 cgctacggcg ataaagtcag cgcgctgcgc gggattttca gcgaatatgg tttgctgaaa
     4741 ttccgtgtac aagttgaagt acgttggctg caaaaactgg ccgcgcacgc agcgatcaag
     4801 gaagttcctg cttttgctgc cgacgcaatc ggttaccttg atgcaattgt cgccaatttc
     4861 agcgaagaag atgccgcacg catcaaaacc atcgagcgta ccactaacca cgacgttaaa
     4921 gcggttgagt atttcctgaa agaaaaagtg gcggagatcc cggaactgca cgcggtttct
     4981 gaattcatcc actttgcctg tacttcggaa gatatcaata acctctccca cgcattaatg
     5041 ctgaaaaccg cgcgtgatga agtgatcctg ccgtactggc gtcaactgat tgatggcatt
     5101 aaagatctcg ccgttcagta ccgcgatatc ccgctgctgt ctcgtaccca cggtcagcca
     5161 gccacgccgt caaccatcgg taaagagatg gcaaacgtcg cctaccgtat ggagcgccag
     5221 taccgccagc ttaaccaggt ggagatcctc ggcaaaatca acggcgcggt cggtaactat
     5281 aacgcccaca tcgccgctta cccggaagtt gactggcatc agttcagcga agagttcgtc
     5341 acctcgctgg gtattcagtg gaacccgtac actacccaga ttgaaccgca cgactacatt
     5401 gccgaactgt ttgattgcgt tgcgcgcttc aacaccattc tgatcgactt tgaccgtgac
     5461 gtctggggtt atatcgccct taaccacttc aaacagaaaa ccattgctgg tgagattggt
     5521 tcttccacca tgccgcataa agttaacccg atcgacttcg agaactccga agggaatctg
     5581 ggcctttcca acgcggtatt acagcatctg gcaagcaaac tgccggtttc ccgctggcag
     5641 cgtgacctga ccgactccac cgtgctgcgt aacctcggcg tgggtatcgg ttatgcgctg
     5701 attgcgtatc aatccaccct gaaaggcgtg agcaaactgg aagtgaaccg tgaccatctg
     5761 ctggatgagc tggatcacaa ctgggaagtg ctggctgagc caatccagac agttatgcgt
     5821 cgctatggca tcgaaaaacc gtacgagaag ctgaaagagc tgactcgtgg taagcgcgtt
     5881 gacgccgaag gcatgaagca gtttatcgac ggtctggcgt tgccagaaga agagaaagcc
     5941 cgcctgaaag cgatgacgcc ggcaaactac attggtcgcg ccatcaccat ggttgatgag
     6001 ctgaaataaa ctcgtatcag tgccggatgg cgatgctgtc cggcctgctt attaagatta
     6061 tccgcttttt attttttcac tttacctccc ctccccgctg gtttatttaa tgtttacccc
     6121 cataaccaca taatcgcgtt acactatttt aataattaag acagggagaa ataaaaatgc
     6181 gcgtactggt tgttgaagac aatgcgttgt tacgtcacca ccttaaagtt cagattcagg
     6241 atgctggtca tcaggtcgat gatgcagaag atgccaaaga agccgattat tatctcaatg
     6301 aacatttacc ggatattgcg attgtcgatc tcggattgcc agacgaggac ggtctgtcac
     6361 tgattcgccg ctggcgtagc aatgatgttt cactgccgat tctggtatta accgcccgtg
     6421 aaagctggca ggacaaagtc gaagtattaa gtgctggtgc tgatgattac gtgactaaac
     6481 catttcatat tgaagaggtg atggcgcgaa tgcaggcatt aatgcggcgt aatagcggtc
     6541 tggcttcaca ggtcatttcg ctaccaccgt ttcaggttga tctctctcgc cgtgaattat
     6601 ctattaatga cgaagtgatc aaactgaccg cgttcgaata caccattatg gaaacgttga
     6661 tacgcaataa tggcaaagtg gtgagcaaag attcgttaat gctccaactc tatccggatg
     6721 cggagctgcg ggaaagccat accattgatg tactgatggg acgtctgcgc aaaaaaattc
     6781 aggcacaata tccgcaagaa gtgattacta ccgttcgcgg ccagggctat ttgttcgaat
     6841 tgcgctgatg aaaaaattac tgcgtctttt tttcccgctc tcgctgcggg tacgttttct
     6901 gttggcaacg gctgcggtag tactggtgct ttcgcttgcc tacggaatgg tcgcgctgat
     6961 cggttatagc gtcagtttcg ataaaactac gtttcggctg ttacgtggcg agagcaatct
     7021 gttctatacc cttgcgaagt gggaaaacaa taagttgcat gtcgagttac ccgaaaatat
     7081 cgacaagcaa agccccacca tgacgctaat ttatgatgag aacgggcagc ttttatgggc
     7141 gcaacgtgac gtgccctggc tgatgaagat gatccagcct gactggctga aatcgaatgg
     7201 ttttcatgaa attgaagcgg atgttaacga taccagcctc ttgctgagtg gagatcattc
     7261 gatacagcaa cagttgcagg aagtgcgaga agatgatgac gacgcggaga tgacccactc
     7321 ggtggcagta aacgtctacc cggcaacatc gcggatgcca aaattaacca ttgtggtggt
     7381 ggataccatt ccggtggagc taaaaagttc ctatatggtc tggagctggt ttatctatgt
     7441 gctctcagcc aatctgctgt tagtgatccc gctgctgtgg gtcgccgcct ggtggagttt
     7501 acgccccatc gaagccctgg caaaagaagt ccgcgaactg gaagaacata accgcgaatt
     7561 gctcaatcca gccacaacgc gagaactgac cagtctggta cgaaacctga accgattgtt
     7621 aaaaagtgaa cgcgaacgtt acgacaaata ccgtacgacg ctcaccgacc tgacccatag
     7681 tctgaaaacg ccactggcgg tgctgcaaag tacgctgcgt tctctgcgta gtgaaaagat
     7741 gagcgtcagt gatgctgagc cggtaatgct ggagcaaatc agccgcattt cacagcaaat
     7801 tggctactac ctgcatcgtg ccagtatgcg cggcgggaca ttgctcagcc gcgagctgca
     7861 tccggtcgcc ccactgctgg acaatctcac ctcagcgctg aacaaagtgt atcaacgcaa
     7921 aggggtcaat atctctctcg atatttcgcc agagatcagc tttgtcggtg agcagaacga
     7981 ttttgtcgag gtgatgggca acgtgctgga taatgcctgt aaatattgcc tcgagtttgt
     8041 cgaaatttct gcaaggcaaa ccgacgagca tctctatatt gtggtcgagg atgatggccc
     8101 cggtattcca ttaagcaagc gagaggtcat tttcgaccgt ggtcaacggg ttgatacttt
     8161 acgccctggg caaggtgtag ggctggcggt agcccgcgaa atcaccgagc aatatgaggg
     8221 taaaatcgtc gccggagaga gcatgctggg cggtgcgcgg atggaggtga tttttggtcg
     8281 ccagcattct gcgccgaaag atgaataaat atgtccatac ttcacgcatt acgttaagca
     8341 tccgttataa tcggttgcag ataccagcct gtggatgctt aacatggaat accaactcac
     8401 tcttaactgg cccgattttc ttgaacgtca ctggcagaaa cgcccggtgg tgttaaaacg
     8461 cggctttaat aattttattg acccgatctc tccagacgag ttggcgggtc tggcgatgga
     8521 aagcgaagtt gacagtcgac tggtcagtca ccaggatggc aaatggcagg tcagccacgg
     8581 cccgttcgaa agctacgatc atctcggtga aaccaactgg tcattactgg tacaggcagt
     8641 gaaccactgg catgagccga ccgccgcgct gatgcgaccg ttccgtgaac taccggactg
     8701 gcgtattgat gatctgatga tttctttttc tgtacctggc ggcggcgtcg gcccgcatct
     8761 cgatcagtac gacgtgttta tcattcaggg taccggacgt cgtcgctggc gagtgggcga
     8821 aaagctgcaa atgaaacagc actgcccaca tccggatctg ttacaggtcg atccgttcga
     8881 agccatcatc gatgaagagc tggagcctgg tgatattctt tatattccgc caggattccc
     8941 gcatgaaggc tacgcgctgg aaaatgcgat gaactattcc gtgggctttc gcgcgccaaa
     9001 tacgcgggaa ctgattagtg gatttgccga ttatgtgctg caacgtgaac tgggcggcaa
     9061 ctactacagc gatcctgatg ttccacctcg cgctcatcct gcggatgttc tgcctcaaga
     9121 gatggataaa ctgcgtgaga tgatgctcga attgatcaac cagccggaac actttaagca
     9181 atggtttggc gagtttatat cccagtcacg tcatgaactg gatatcgcgc cgccggaacc
     9241 gccttatcag ccagatgaaa tctacgatgc gctgaaacaa ggtgatgtgc tggtgcgcct
     9301 gggtggtctg cgcgtattgc gcattggcga cgacgtgtat gccaatggtg agaagatcga
     9361 ttccccgcac cgtccggcac tggatgcact cgccagcaac attgcgctga ctgcggagaa
     9421 ttttggcgat gcgctggaag atccgtcatt cctcgcgatg ctcgcggcgc tggtcaatag
     9481 cgggtattgg ttcttcgaag ggtaagtttg gatttaagcc ggatgcggca tcacatgccg
     9541 catccctttt cgcttacttc cgttgcgccg ttaactcggc aatacggacg atcacctgca
     9601 ccgctttttc cataccttcc agagtcacaa actcatgctt accatgatag ttgtaaccgc
     9661 cagtgaacaa gttcgggcac ggtaatccca taaacgacaa ctgcgcgccg tcggtaccgc
     9721 cgcggatcgg tttcagttcc ggttcaatat cgcagtcacg cattgcctgc tgggcgatat
     9781 cgagaatatg cggatgctca accactttct cgcgcatatt gtagtaactg tcttcaatca
     9841 ccagttcaat gtagcaatca ggatgtaacc ctttgcccac ttttttggcg atctccatca
     9901 ttttacattt acgcgcttca aactgtttac ggtcgaaatc acggatgatg tagtgcatat
     9961 cggcccgttc aacggtgcct ttcatgcccg ccaggtgata gaaaccttca tagccttctg
    10021 tcatttccgg gctttcatcc gccggaactt ccgcatgaat acgtgccgcc agcgacagcg
    10081 catttaccat cactcctttc gccgtgcccg gatgaacatt gttaccgaca attttgatat
    10141 tgaccgatgc ggcgttgaag ttttcaaact ccagttcgcc tacgccacca ccgtcaacag
    10201 tgtaagccca gcgggcatcg aaggcatcaa catcaaaatg tttcgcccct ttgcccactt
    10261 cttcatccgg ggtaaaggcg acgcgaatat caccatgcgg aatgtttttc tgttgcaata
    10321 ccgccagcgc ggtcatgatt tctgcaatac ctgctttgtc atcggcacct aacaaggttt
    10381 taccatcggt ggtaatcaat gtctgaccca gtagctgatg cagcaccggg aacataaccg
    10441 gtgataaaac ttcatcgccg atacccagcg caatatcgcc accgcgatag ttttcaacaa
    10501 tttgcggatt aacatttttg ccgctgcaat ccggtgaggt atccacatga gaaataaagc
    10561 caatcgccgg gatatcgcca gggacgttag ccggtaacgt cgccatcaaa gtgcccttct
    10621 cacttaaggt cacattgata agccccattt cttcgagctg ctctttcagc agatgcaata
    10681 acttccattg gccttccgtg ctgggaacct gtctcacccc tgcttttgat tgggtatcca
    10741 gagacacgta gttcaaaaat cgctcaagta gtttatccat gtagtcaccc tcactttttg
    10801 tgacaacatt attaagaagc aagaaaagac aaatattgcg tcaggtcact tttacccctg
    10861 caagcgggaa tatttatcag cattacctta atgaatataa agc
//
LOCUS       DADMJB010000142        10897 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.143, whole genome shotgun sequence.
ACCESSION   DADMJB010000142 DADMJB010000000
VERSION     DADMJB010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10897)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10897)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10897
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.143"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(228..2087)
                     /gene="gss"
                     /locus_tag="JN078_003239"
     CDS             complement(228..2087)
                     /gene="gss"
                     /locus_tag="JN078_003239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutathionylspermidine
                     amidase/synthase"
                     /protein_id="HAY9042337.1"
                     /translation="MSKGTTSQDAPFGTLLGYAPGGVAIYSSDYSSLDPQEYEDDAVF
                     RSYIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQ
                     AFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQ
                     WTRELEMVVENGCYTLKDTFDDTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLEN
                     KGQFDGKWLDEKDPLQNAYVQANGQVINQDPYHYYTITESAEQELIKATNELHLMYLH
                     ATDKVLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDERGLKVYEYNAD
                     SASCHTEAGLILERWAEQGYKGNGFNPAEGLINELAGAWKHSRARPFVHIMQDKDIEE
                     NYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVWKTWAWETAFDQ
                     IREVSDREFAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLF
                     PHHRYLLDTDFTVNDELVKTGYAVKPIAGRCGSNIDLVSHHEEVLDKTSGKFAEQKNI
                     YQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGDESLVIKKESDIEPLIVVKK"
     gene            2292..3158
                     /gene="yghU"
                     /locus_tag="JN078_003240"
     CDS             2292..3158
                     /gene="yghU"
                     /locus_tag="JN078_003240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311901.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent disulfide-bond
                     oxidoreductase"
                     /protein_id="HAY9042338.1"
                     /translation="MTDNTYQPAKVWTWDKSAGGAFANINRPVSGPTHEKTLPVGKHP
                     LQLYSLGTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIP
                     ALRDHTHNPPICVFESGSILLYLAEKFGYFLPQDLAKRTETMNWLFWLQGAAPFLGGG
                     FGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGN
                     VVLGGVYDAAEFLDAGSYKHVQRWAKEVGERPAVKRGRIVNRTNGPLNEQLHERQDAS
                     DFETNTEDKRQG"
     gene            complement(3281..3529)
                     /gene="hybG"
                     /locus_tag="JN078_003241"
     CDS             complement(3281..3529)
                     /gene="hybG"
                     /locus_tag="JN078_003241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation factor HybG"
                     /protein_id="HAY9042339.1"
                     /translation="MCIGVPGQVLAVGEDIHQLAQVEVCGIKRDVNIALICEGNPADL
                     LGQWVLVHVGFAMSIIDEDEAKATLDALRQMDYDITSA"
     gene            complement(3542..3883)
                     /gene="hypA"
                     /locus_tag="JN078_003242"
     CDS             complement(3542..3883)
                     /gene="hypA"
                     /locus_tag="JN078_003242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HAY9042340.1"
                     /translation="MHELSLCQSAVEIIQRQAEQHDVKRVTAVWLEIGALSCVEESAV
                     RFSFEIVCHGTVAQGCDLHIVYKPAQAWCWDCSQVVEIHQHDAQCPLCHGERLRVDTG
                     DSLIVKSIEVE"
     gene            complement(3876..4364)
                     /gene="hybE"
                     /locus_tag="JN078_003243"
     CDS             complement(3876..4364)
                     /gene="hybE"
                     /locus_tag="JN078_003243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase-2 assembly chaperone"
                     /protein_id="HAY9042341.1"
                     /translation="MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSD
                     FTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGV
                     SQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGE
                     NA"
     gene            complement(4357..4851)
                     /locus_tag="JN078_003244"
     CDS             complement(4357..4851)
                     /locus_tag="JN078_003244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HAY9042342.1"
                     /translation="MRILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTA
                     GMELLGDMANRDHLIIADAIVSKKNTPGTMMILRDEEVPALFTNKISPHQLGLADVLS
                     ALRFTGEFPKKLTLVGVIPESLEPHIGLTPTVEAMIEPALEQVLAALRESGVEAIPRE
                     AIHD"
     gene            complement(4851..6554)
                     /gene="hybC"
                     /locus_tag="JN078_003245"
     CDS             complement(4851..6554)
                     /gene="hybC"
                     /locus_tag="JN078_003245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 large subunit"
                     /protein_id="HAY9042343.1"
                     /translation="MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEI
                     VKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTH
                     DHIVHFYQLSALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVA
                     SGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNL
                     AVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRG
                     KGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHS
                     WYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRE
                     STQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNI
                     GKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGP
                     RNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV
                     L"
     gene            complement(6551..7729)
                     /gene="hybB"
                     /locus_tag="JN078_003246"
     CDS             complement(6551..7729)
                     /gene="hybB"
                     /locus_tag="JN078_003246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase cytochrome b subunit"
                     /protein_id="HAY9042344.1"
                     /translation="MSHDPQPLGGKIISKPVMIFGPLIVICMLLIVKRLVFGLGSVSD
                     LNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLG
                     GLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWK
                     VSLKRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSLLTAF
                     IMGFSIVIFEGSLVQAGLRGNGPDEKSLFVKLTNTISVLLAIFIVLRFGELIYRDKLS
                     LAFAGDFYSVMFWIEVLLMLFPLVVLRVAKLRNDSRMLFLSALSALLGCATWRLTYSL
                     VAFNPGGGYAYFPTREELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA
                     "
     gene            complement(7719..8705)
                     /gene="hybA"
                     /locus_tag="JN078_003247"
     CDS             complement(7719..8705)
                     /gene="hybA"
                     /locus_tag="JN078_003247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 operon protein HybA"
                     /protein_id="HAY9042345.1"
                     /translation="MNRRNFIKAASCGALLTGALPSVSHAAAENRPPIPGSLGMLYDS
                     TLCVGCQACVTKCQDINFPERNPQGEQTWSNNDKLSPYTNNIIQVWTSGTGVNKDQEE
                     NGYAYIKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVP
                     KYDYNNPFGALHKCELCNQKGVERLDKGGLPGCVEVCPAGAVIFGTREELMAEAKKRL
                     ALKPGSEYHYPRQTLKSGDTYLHTVPKYYPHLYGEKEGGGTQVLVLTGVPYENLDLPK
                     LDDLSTGARSENIQHTLYKGMMLPLAVLAGLTVLVRRNTKNDHHDGGDDHES"
     gene            complement(8708..9826)
                     /gene="hybO"
                     /locus_tag="JN078_003248"
     CDS             complement(8708..9826)
                     /gene="hybO"
                     /locus_tag="JN078_003248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 small subunit"
                     /protein_id="HAY9042346.1"
                     /translation="MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVT
                     NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK
                     HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAW
                     GGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKN
                     RPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQ
                     FCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSA
                     GAIGLLGGVVGLVAGVSVMAVRELGRQQKKDNADSRGE"
     gene            complement(10015..10302)
                     /locus_tag="JN078_003249"
     CDS             complement(10015..10302)
                     /locus_tag="JN078_003249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2623 domain-containing protein"
                     /protein_id="HAY9042347.1"
                     /translation="MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMY
                     EKTGDRQLSAWEAGILTRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN"
     gene            complement(10421..10897)
                     /locus_tag="JN078_003250"
                     /pseudo
     CDS             complement(10421..10897)
                     /locus_tag="JN078_003250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311911.3"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
BASE COUNT         2660 a         2987 c         2693 g         2557 t
ORIGIN      
        1 caaagtgaaa tatcattttt taacgataaa aagagtgtta tttcttgtgt atcagacaat
       61 aagcattcat tcaaaacctt tagaaataat caaaacacag gtattccact ggttaatata
      121 ttcacatatg aaatgaataa atattagaac atataaatat tgaatatttt gattaatccc
      181 cgtactgatt attcttcata atcagtacgg ggttgctaca acatgtatta ctttttcacc
      241 acaattaacg gttcaatatc actctctttt ttgatgacca gtgattcatc accgcgcaaa
      301 cacgtcccac cgtagttgcc gcccacggtg aaggtacata cctgaatgta tttaccgtcc
      361 actttcggca aacaccacag ttgctgatag atgtttttct gctcggcaaa tttaccgctg
      421 gttttgtcca gcacctcttc atgatggctg accaggtcga tattgctacc acagcgaccg
      481 gcaatcggtt tcactgcgta acctgttttc accaattcat cattaacagt gaaatcggta
      541 tccagcaggt aacgatggtg cgggaacagc gaccagagga tcggcagaat cgctttgttg
      601 ccggggatca ccgtccacag cggctcaaag actagcactt ccgggcgcag caatacgtcg
      661 ataagacgca cttcgttttg cggatgaccg gtacggattg gcaccgcagc aaactcacgg
      721 tcgctaactt cacgaatctg atcaaacgcg gtttcccacg cccaggtttt ccacacgcag
      781 ttaaccagtc gcccttcccc atcaatcagt tgcccggcag catcccagcc cagttcatcc
      841 aatccacgca agatacgcgt ttcaaagccc gcctggtgca gcgcctgctc cataaactgc
      901 gcgtgatagt tttcctcgat atctttgtcc tgcatgatat ggacaaacgg acgtgcacga
      961 ctgtgtttcc aggcaccagc caattcgtta atcagccctt ccgccggatt gaagccgttg
     1021 cctttatagc cctgctccgc ccaacgttcg aggatcaagc ccgcttcggt atgacaggag
     1081 gcggagtcgg cgttgtactc gtaaaccttc aggccacgct catccatgca gaaatccata
     1141 cgaccagtga tcatatggtg acggcgacgc tgccaggaga gacgcaaacg tggccagagg
     1201 attttcggaa tgtcgaacag cgccagcagg ttgtcatctt tcagtacctt gtcggttgcg
     1261 tgaagataca tcaggtgcag ctcgttggtg gctttaatta gctcctgctc ggcactctcg
     1321 gtaatggtgt agtaatgata aggatcctga ttgatcacct gaccgttggc ctgcacatag
     1381 gcgttttgca gcggatcttt ttcatccagc catttaccgt caaactggcc tttgttttcc
     1441 aggcgcgctc cgctgatttt cagcagctcg cctgcaattt ccggctgcgg taagctgtat
     1501 tcagtatctt ccgtctggat catccagccc agaatggtgg tgtcatcaaa agtgtctttc
     1561 agggtatagc agccgttttc gaccaccatc tccagctcac gcgtccactg ttgcccttgc
     1621 ggcaacgggg aatgaatcac gttctgttcc gcaatacgga ctttgttgcc atgcaattgg
     1681 gtaatgatgg cgacatggcc agtgtcttta aattcaccgc ctttatccca gataagaagc
     1741 gcacccgcga ccggcgcacg cggcgagccg ttaggaaatg cctgcaatgg caggatgttg
     1801 tcattaacca cttctcgcag gaagcgcagc gagaaaatct cccacgccat acccacgtca
     1861 gtaaagacca caccgtaatt cagaaagaga aaacggcgag caaattcaac gcattgccac
     1921 ttgtggccca tatattcgtc gtcgatatag ctacggaata cggcgtcatc ttcgtattcc
     1981 tgcggatcga gagaactgta atctgaagag tagattgcta ccccacctgg ggcgtagccc
     2041 aataatgtcc cgaacggggc atcctggctg gtcgttcctt tgctcatcac tttaccttta
     2101 acaatacaac ctaagcagtt ggcgtaattg ttgtgctctg attacctgct cagcgacatt
     2161 aaccggacag aggtcagact aatcatacac ctcatcgcag cggctggcgc aaagggttaa
     2221 aaaattcaca ttctgtacag caagtgacct gccacactgc ttcaacacta ccactcagaa
     2281 ggcaactcac tatgacagac aatacttatc agcccgcgaa agtctggacg tgggataaat
     2341 ccgctggcgg cgcgttcgcc aatattaatc gcccggtttc tggtccgacg catgaaaaaa
     2401 cgctgcccgt tggcaaacac ccattgcaac tttattcgct gggaacgccg aacggtcaga
     2461 aagtaacgat tatgcttgag gagctgctgg cgctgggcgt tactggtgca gagtacgacg
     2521 cctggctgat tcgtattggc gatggcgatc aattctccag cggctttgtc gaagtgaacc
     2581 caaactcgaa gatcccggcg ctgcgcgatc atacgcataa tccgccgatc tgtgtgtttg
     2641 aatctggttc gatcctgctt tatctggcgg agaaatttgg ctacttcctg ccgcaggatt
     2701 tggcaaagcg tactgaaacg atgaactggc tgttctggtt acagggcgcg gcaccgttcc
     2761 tcggcggtgg ttttggtcac ttttaccatt acgcaccggt aaagattgag tacgccatca
     2821 accgctttac catggaagcc aaacgtctgc tcgacgtgct ggataagcaa ctggcgcagc
     2881 ataagtttgt tgcgggcgat gagtacacca ttgcggatat ggcgatttgg ccgtggtttg
     2941 gcaacgtggt gttaggtggt gtgtatgatg ccgctgagtt tcttgatgcg ggcagttata
     3001 agcatgtaca acgctgggcg aaagaagtag gcgaacgtcc ggcggtgaaa cgtgggcgta
     3061 ttgttaaccg caccaacgga ccgctgaatg agcagttgca tgagcgccag gacgccagtg
     3121 atttcgagac gaatacggaa gataagcgtc aggggtaagg gttggtgttc gtcgcagcaa
     3181 gccatccagg ccggataagg cgttcacgcc gcatccggca atcgtgcaca atgcctgatg
     3241 cgacgctgcc gcgtcttatc aggcctacga aagctaatca tcacgcgctg gtaatgtcgt
     3301 aatccatttg gcgcagtgcg tctaatgtgg ctttggcttc atcttcgtcg atgatgctca
     3361 tggcaaatcc gacgtgtacc agcacccact ggcccagtag atcggcaggg ttaccttcac
     3421 aaatcagggc gatattcacg tcgcgcttga taccacatac ttcaacctgc gcaagctggt
     3481 gaatatcttc accgacagcc agcacctggc ctggaacgcc aatacacatt attaactccg
     3541 gttattcaac ttcaatactt ttgacgatca gcgaatcgcc ggtatcgaca cgcaaccgct
     3601 cgccgtgaca gagcggacac tgcgcatcgt gctgatgaat ctccaccacc tggctgcaat
     3661 cccagcacca ggcctgggcg ggtttataga cgatatgtaa atcgcaccct tgagccaccg
     3721 ttccgtggca gacaatttca aaactaaaac ggacggcgct ctcctcaacg caggagagcg
     3781 cgccaatttc cagccacacg gcggtgacgc gcttaacatc gtgctgctcc gcctgccgtt
     3841 ggataatttc aacggcgctc tggcaaagcg acaactcatg cattttcgcc actcctgcga
     3901 ccaaacagca gggcgcgacg ccctgcgtgt ggtacatccg gattcgtgac tggcagcgaa
     3961 aggatcattc gtgcgcagtc atccgtcagg cgttggccct cttcaatcga catactgtgc
     4021 gaaagcggtg acatcagcga acaggagagg tattgcgaaa caccgtccag ttcgccaacg
     4081 gtaaaggtca tggtgccata cggcagttgc agaccaattt tttcactcac tttgcgcagc
     4141 ggccagagtt gatccgggcc ggggaagata actgcactca gcatccacgg ggtgatcaca
     4201 caccccgtcc actgaccttc gaacagcgta aaatcagaaa catacaccgg cattgaagga
     4261 tgcagaaaag agagatcgtg catcgaacgc cgggcaattt cttcaaacgc tgcctgtact
     4321 tgcgccttcg gggaggtctg gaaacctgct atctcttcag tcatgaatcg cctcccgtgg
     4381 gatggcttcc acgcctgatt cgcgcagcgc agccagaacc tgctcaagcg caggttcaat
     4441 cattgcttca accgtcggcg ttaagccgat gtgtggctcc agcgattccg ggatcacgcc
     4501 gaccagggtc agctttttcg gaaactcacc ggtgaagcgc agggccgaca atacgtcggc
     4561 caggccaagc tgatgcggag agattttgtt ggtaaacaac gccggaactt cttcatcccg
     4621 caggatcatc atcgttcccg gcgtgttctt tttcgacaca atggcatccg caataatcag
     4681 atgatcgcga tttgccatgt cgccaagcag ctccattccc gccgtgccgc catcgaggat
     4741 ctcaacataa tccggcagaa tgtatcgttg ctctaacgct tcgacaatcc gcacaccgat
     4801 ggcttcatcg gtcagcaaaa tattgccgac ccctaagact aaaatacgca ttacagaacc
     4861 ttcactgaaa ccacttcgtt gccgtcggca tccactacgt gtaccgcaca ggccatgcac
     4921 gggtcgaagg agtgaatggt acgcaccact tccagcggtt tattcggatc agcaaccggt
     4981 gtacccacca gcgactgctc gtaaggaccg acgtcatcat tgaagttacg cggaccagag
     5041 ttccaggttg atggaacaac tgcctggtag ttactgataa taccgtcttt aataaccatc
     5101 cagtgagaga gcataccgcg cggcgcttcg aggaagccaa cacctttgaa ctcacccgtt
     5161 gccggaatgt tcggtttcac aaaggtggtg tgatcgcctt tgccgatatt ggtgatcagt
     5221 gcactgtatt gattttgcag gatatcctgc aattcgcagc agtgaacggt acgaccaata
     5281 atacggccca gcgtggagtg cagctgcgcc acttccagcg tgttgccagt cagtttctga
     5341 taaatcgcaa cgatttcatt cagtttgttc tgggtagatt cgcgacctgc cgccagtttc
     5401 accagcatat tagccagcgg acccacttct accgttttgc cgtagaaagt cggtgatttc
     5461 acccaggaat atttcccgtc gtcagaccaa ccatcataag ccggaatggt ggtaccttcc
     5521 cacggtgcct gcggcgcttc gtctttatac caggagtgct tcgcgctttc ctgaatgcct
     5581 ttgatcaggt attcatcgga atgagaagtg atcggacgat acgaggacag atccgcattc
     5641 tcaatgtagc cgcccgggaa caggaagctg ccgtttttac tgtcggtcgg gaattccggc
     5701 acgctcaggt agttcaccgc acctttaccg cgcgtcagcc attccgggta gaacgcggca
     5761 ataactgcgg tatcaacctt ataaacctgt tcaacaaagt cgctcagctt gtcgatgaaa
     5821 gacttgatgt acatcaggcg ctcaaggttc agcacgccca aaccgtcgag gttgatcggg
     5881 ttcgcgacac cacctaccgc caggttctga atgtgcggcg ttttaccgcc cagcagcgcc
     5941 acgacgcggt tagcgtcacg ctggcactcc agcgcctgca ggtagtgcgc taccgcaatc
     6001 aggttcactt ccggcggcag tttcatcgcc gggtgacccc agtagccatt ggcgaaaata
     6061 cccaactgac cgctggcaac cagatctttg atcttgttct gaactttagt gaactcttcc
     6121 ggactgttca gatgccaggt cgaaacgcct ttcagcattt cggaggcttt ggttgggtca
     6181 gcttgcagtg cagaagtgat gtccacccag tccagcgccg aaagctgata gaaatgaacg
     6241 atatggtcat gcgtggtgtg cgcagccaga atgatgttac ggatgtattg cgcgttaacc
     6301 ggaacgtcga tattcagcgc actttctgcc gcacgaacgg aagacagcgc gtgagtggta
     6361 gtacatacgc cacagatacg ttgcacaatc atccatgcat cgcgcggatc gcggtttttc
     6421 acgatctctt ccatgccgcg ccacatggta ccggaagccc atgctttcga aacgacgcca
     6481 ttttcgattt cgcaatcgat gcgtaaatgc ccctcaatac gggttaccgg atcaatagta
     6541 attctctggc tcatgctttg ctcgcctcat gacgattatg atcgttttgt tttaaaggag
     6601 gaagtatcgg cagtagacga atgagtacga tgtaagcgca aatctcaata gccacaaaac
     6661 caatagaaat caacagttct tccctggtcg ggaagtaggc gtaaccgccg cccgggttga
     6721 atgccaccag cgaataggtc agacgccagg ttgcacaacc taacagtgcg ctcagtgctg
     6781 acaggaacag catgcgggaa tcattacgca gcttcgccac acgcagaacg accagcggga
     6841 agagcatcag caggacttca atccagaaca tcacggagta gaagtcaccg gcaaacgcta
     6901 acgacagctt gtcgcgatag ataagctcgc caaagcgcag cacgataaaa atcgccagca
     6961 acacactgat ggtgttggtc agcttgacga acagactctt ttcatccgga ccgttgccac
     7021 gcagacccgc ctgcaccagc gaaccttcaa agatgacaat cgagaagccc atgatgaacg
     7081 ccgtcagcag cgagaacagc ggcaacattt catagctctg ccacaacgga tgcaccttgt
     7141 agcccgccga gatcatcagt gaccccattg aagactggtg catggtcggc aacagcgcgc
     7201 caagtgcaat gatgaagaac atcaccttgt tcagacgctt gagagaaacc ttccagccca
     7261 gacgttcaaa cagtgccgga gcaaactcca gtgccatcac gccgatatag atggtcatac
     7321 agaccgccgt ctcgaacagt accgagttca cgttgaagtg acccggaatg tagaagtacg
     7381 gcaggttcca gtagcgaccc acgtcgatag tgatcgacaa gccacccagt gagtaaccaa
     7441 acagactcgc caacagcgcc ggacgcacca gcggatggta ttgcccacgg ttaaagacgt
     7501 ataccgccca cgccagcgcc cagccgccac aggcaaagcc ggtaccaatc agcaggtcaa
     7561 acgcgatcca cacgccccac gggaagccgc cgttcaggtc agagacagag cccagaccga
     7621 acaccagacg cttcacaatc aggagcatac agatgacgat taacggtcca aaaatcatga
     7681 ccggtttact gatgattttg ccgcccagcg gttgtggatc atgactcatg atcgtctcct
     7741 ccgtcgtgat ggtcgttttt ggtgttgcga cgaaccagca cggttaagcc cgccagcaca
     7801 gccagtggta gcatcatgcc tttatacagg gtgtgttgaa tattttcgga acgcgcaccg
     7861 gtagaaagat cgtccagttt cggcaggtcg agattttcat aaggcacacc cgtcagtacc
     7921 agaacctgag taccgccgcc ctctttctcg ccgtacagat gcggataata tttcggcacc
     7981 gtatgcaggt aagtgtcgcc agatttcagc gtctgacgcg gatagtggta ttcgctgcca
     8041 ggcttcagcg ccagacgttt tttcgcctcc gccatcagct cttcacgcgt accgaaaatc
     8101 accgcgcccg ccgggcacac ttctacgcag ccaggcagac cgcctttatc gagacgttcc
     8161 acacctttct ggttgcacag ctcgcactta tgcagcgcac caaacgggtt gttgtagtcg
     8221 tacttcggca cgttgtacgg acaggcgacc atgcagtaac ggcaaccggt gcacacgtct
     8281 ttgtcgtaat ggacaatgcc ggttttcgga tcttttttca gtgcagagac cgggcacaca
     8341 gagacacagt tcggatcgac gcagtgcata cactgtttct taatgtacgc gtagccgttc
     8401 tcctcctggt ctttgttgac ccctgtgccg ctggtccaca cctgaatgat gttattggta
     8461 tacggcgaca gtttgtcgtt gttcgaccag gtctgttccc cttgcgggtt acgttcaggg
     8521 aagttgatat cctgacactt ggtgacgcaa gcctggcagc ctacgcacaa ggtcgagtcg
     8581 tacaacatcc ccagcgatcc cggaattggc gggcggtttt cagcagccgc atgactgaca
     8641 gacggcagcg cgcccgtcag caatgccccg caggaggctg ctttaataaa attacgtctg
     8701 ttcacggtta ttctccccgt gagtcagcgt tatctttctt ttgctgacga cccagttcac
     8761 gcaccgccat cacgctgaca ccggcaacca gcccaaccac accgccgagc aaaccaatag
     8821 cgcctgcaga gacgttaccg ccctctttag cgttaacatc cggtttctgt gaacgcggag
     8881 tctgattttc gacgttggca agctgatgga tgcctttatg gaagccgata ccttcttcgt
     8941 tacagccata gcatgggtga ccaatcgcta ccggccacac gccgccaaca tcgcagaatt
     9001 gcagcgttga gcagttgccg taagtttctg gccctttaca gccgaggtgg tacaggcacc
     9061 agccttcacg gtggccttca tcaccgaatt ctttggcaaa acgaccagca tcgaagtgcg
     9121 ggcgacgttc gcagtgttcg tgaatcagac ggccataggc gaaggtcgga cgatttttgt
     9181 catccagttt cggcggtttg ccgtaagtga tgatgtgcgc aacggtcgcg aggaagttgt
     9241 gcgggttcgg cgggcagccc ggaatattga taacggtttt gcctggcaga acttcttgca
     9301 ggctgactgc gccagttggg ttaactccag ctgcggcaac accgccccac gcagagcagg
     9361 aaccgatagc gataatcgct gctgcgcctt ctgccgcttt gcggatgtga tccacaatcg
     9421 gctcaccagc aaccatgcaa taaataccgt tatcttttaa tgggatggaa ccatccacaa
     9481 ccaacacata ctgccctttg tacttctcaa gtgcgttatg tttgttctct tcgacctgat
     9541 gaccgaaggc ggcggaaagc acttcgtgat actccagaga gatagtctcc agcacgaggt
     9601 tttctaccgt tggatgcgtt gcacgaagca gagattccgt acaaccggtg cactcctgcg
     9661 cgccaatcca gataactggc ggacgctgcg ggttagtaac cgattcggcc atctctgcag
     9721 cggctttgct acttaacccc atggtggcgg ctaatgctgc acaaagcttc atgaaatcac
     9781 gacggttaat gccgtgagaa tggatgaggg tgttatctcc agtcatttat agttattccg
     9841 ttgcgaagac ctggcatata ttttgcctca atcgcaaaat caataatgcg atcgatgcgc
     9901 catttaccac acatttatta tggttatcga tatcatgata ctgcggcggg gcgctaaaac
     9961 gaagggaaga agcattagtg taattaatta aagcaagata atacgtatgt ttgatcaatt
    10021 ttcgaggcga taaccggcca taaaaaagcg caacgtagaa caggaattat tctcacgaaa
    10081 gaaatccatt accatctctt tatccagtcc atagcggcgc gtcagaatac ccgcttccca
    10141 ggcgctaagc tggcgatctc cggtcttttc gtacatccgg tgtgagtagc ctaatacaaa
    10201 accgcgttta taatcggcac agaattttgt cacattaacc gcactgtcgg catgcgttgc
    10261 ttttaatccc gccattaagc ctttaccaaa atggttattc atcgttcacc tcattcgcta
    10321 tatattatca tatatagcaa tattttaggc aaagaacgac ttttgcgcac gctatttttt
    10381 catgcttgtt taagacgtaa tcccgtaaga gataaaccca tcaggagaga tatttatcga
    10441 accatttcag cgtcctttgc caggcaagat cggcggcaga tttgtcataa cgaggcgtgg
    10501 aatcattatg gaatccgtga ttaacccccg gatagatata cgcctcatag accttattat
    10561 tggctttcaa cgccgcctca taagcgggcc agccctcgtt gattcgggtg tccagttccg
    10621 cgaagtggag tagtaaaggc gcttcaatct tcgccacatc ggcagtgggt gcctgacgac
    10681 cataaaacgg caccgcgcag gccagttccg gatacgcgac agccgccgcg ttcgatacac
    10741 caccgccata gcaaaatccg gtaataccca cttatgcctg tcgcttgcgg atagcgttgc
    10801 ataaactcaa ttgcggcaaa gaaatcattc atcagtttgg ttggatcaac ctgctgttgc
    10861 agctcacgac ctttatcatc atttcccgga taacctc
//
LOCUS       DADMJB010000143        10856 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.145, whole genome shotgun sequence.
ACCESSION   DADMJB010000143 DADMJB010000000
VERSION     DADMJB010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10856)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10856)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10856
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.145"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            83..424
                     /locus_tag="JN078_003251"
     CDS             83..424
                     /locus_tag="JN078_003251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flxA-like family protein"
                     /protein_id="HAY9042348.1"
                     /translation="MATISSTSIPSIQTQSSNRASQGSDVASQIARISQQIIKLTQQI
                     KEIVDTSGSAEDKQKQAELIQQQITLLETQLAQLQKQQAEKAQEKEQRLSLDVSLLNP
                     VEKTTHIDIYI"
     gene            complement(415..1341)
                     /locus_tag="JN078_003252"
     CDS             complement(415..1341)
                     /locus_tag="JN078_003252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY9042349.1"
                     /translation="MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENH
                     TGVRLLDRTTREVVLTDAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQT
                     ISAHLIPQCIAESHRRYPDIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCE
                     AILSEPFFLLCHRDSALAVEDYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQAN
                     IVQEIGHPATLFPMVAAGIGISILPALALLLPEGSPLVVKRITPVVERQLMLVRRKNR
                     SLSTAAEALWDVVRDQGNALMAGREGDPLYQI"
     gene            1431..2429
                     /locus_tag="JN078_003253"
     CDS             1431..2429
                     /locus_tag="JN078_003253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter"
                     /protein_id="HAY9042350.1"
                     /translation="MKLFRILDPFTLTLITVVLLASFFPARGDFVPFFENLTTAAIAL
                     LFFMHGAKLSREAIIAGGGHWRLHLWVMCSTFVLFPILGVLFAWWKPVNVDPMLYSGF
                     LYLCTLPATVQSAIAFTSMAGGNVAAAVCSASASSLLGIFLSPLLVGLVMNVHGAGGS
                     LEQVGKIMLQLLLPFVLGHLSRPWIGDWVSRNKKWIAKTDQTSILLVVYTAFSEAVVN
                     GIWHKVGWGSLLFIVVVSCVLLAIVIVVNVFMARRLGFNKADEITIVFCGSKKSLANG
                     IPMANILFPTSVIGMMVLPLMIFHQIQLMVCAVLARRYKRQTEQLQAQQESSADKA"
     gene            complement(2426..2644)
                     /locus_tag="JN078_003254"
     CDS             complement(2426..2644)
                     /locus_tag="JN078_003254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042351.1"
                     /translation="MEKEQLIEIANTIMPFGKYKGRRLIDLPEEYLLWFARKDEFPAG
                     KLGELMQITLLIKTEGLTQLVQPLKRPL"
     gene            complement(2646..4661)
                     /gene="ligA"
                     /locus_tag="JN078_003255"
     CDS             complement(2646..4661)
                     /gene="ligA"
                     /locus_tag="JN078_003255"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HAY9042352.1"
                     /translation="MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRE
                     LETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL
                     KNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLH
                     GENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKR
                     PLTFFCYGVGVLEGGELPDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEED
                     RPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRT
                     GAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVL
                     SERPEDTREVVFPTHCPVCGSDVERVEGEAVARCTGGLICGAQRKESLKHFVSRRAMD
                     VDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTF
                     ARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAE
                     ESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVEL
                     GAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGS"
     gene            complement(4732..5718)
                     /gene="zipA"
                     /locus_tag="JN078_003256"
     CDS             complement(4732..5718)
                     /gene="zipA"
                     /locus_tag="JN078_003256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA"
                     /protein_id="HAY9042353.1"
                     /translation="MMQDLRLILIIVGAIAIIALLVHGFWTSRKERSSMFRDRPLKRM
                     KSKRDDDSYDEDVEDDEGVGEVRVHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPR
                     QPVQQPPEAQVPPQHAPRPAQPVQQPVYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPA
                     QQAFQPAEPVAAPQPEPVAEPAPVMDKPKRKEAVIIMNVAAHHGSELNGELLLNSIQQ
                     AGFIFGDMNIYHRHLSPDGSGPALFSLANMVKPGTFDPEMKDFTTPGVTIFMQVPSYG
                     DELQNFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDANA"
     gene            5948..6709
                     /gene="cysZ"
                     /locus_tag="JN078_003257"
     CDS             5948..6709
                     /gene="cysZ"
                     /locus_tag="JN078_003257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate transporter CysZ"
                     /protein_id="HAY9042354.1"
                     /translation="MVSSFTSAPRSGFYYFAQGWKLVSQPGIRRFVILPLLVNILLMG
                     GAFWWLFTQLDVWIPTLMSYVPDWLQWLSYLLWPLAVISVLLVFGYFFSTIANWIAAP
                     FNGLLAEQLEARLTGATPPDTGIFGIMKDVPRIMKREWQKFAWYLPRAIVLLILYFIP
                     GIGQTVAPVLWFLFSAWMLAIQYCDYPFDNHKVPFKEMRTALRTRKITNMQFGALTSL
                     FTMIPLLNLFIMPVAVCGATAMWVDCYRDKHAMWR"
     gene            6894..7865
                     /gene="cysK"
                     /locus_tag="JN078_003258"
     CDS             6894..7865
                     /gene="cysK"
                     /locus_tag="JN078_003258"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HAY9042355.1"
                     /translation="MSKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCR
                     IGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRK
                     LLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPE
                     IWEDTDGQVDVFIAGVGTGGTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGE
                     EIKPGPHKIQGIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGA
                     AVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKELQQ"
     gene            8249..8506
                     /gene="ptsH"
                     /locus_tag="JN078_003259"
     CDS             8249..8506
                     /gene="ptsH"
                     /locus_tag="JN078_003259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003038086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein Hpr"
                     /protein_id="HAY9042356.1"
                     /translation="MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASA
                     KSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE"
     gene            8551..10278
                     /gene="ptsI"
                     /locus_tag="JN078_003260"
     CDS             8551..10278
                     /gene="ptsI"
                     /locus_tag="JN078_003260"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate-protein phosphotransferase
                     PtsI"
                     /protein_id="HAY9042357.1"
                     /translation="MISGILASPGIAFGKALLLKEDEIVIDRKKISADQVDQEVERFL
                     SGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADA
                     AAHEVIEGQASALEELDDEYLKERAADVRDIGKRLLRNILGLKIIDLSAIQDEVILVA
                     ADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYL
                     ILDAVNNQVYVNPTNEVIDKMRAVQEQVASEKAELAKLKDLPAITLDGHQVEVCANIG
                     TVRDVEGAERNGAEGVGLYRTEFLFMDRDALPTEEEQFAAYKAVAEACGSQAVIVRTM
                     DIGGDKELPYMNFPKEENPFLGWRAIRIAMDRKEILRDQLRAILRASAFGKLRIMFPM
                     IISVEEVRALRKEIEIYKQELRDEGKAFDESIEIGVMVETPAAATIARHLAKEVDFFS
                     IGTNDLTQYTLAVDRGNDMISHLYQPMSPSVLNLIKQVIDASHAEGKWTGMCGELAGD
                     ERATLLLLGMGLDEFSMSAISIPRIKKIIRNTNFEDAKVLAEQALAQPTTDELMTLVN
                     KFIEEKTIC"
     gene            10319..10828
                     /gene="crr"
                     /locus_tag="JN078_003261"
     CDS             10319..10828
                     /gene="crr"
                     /locus_tag="JN078_003261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015833547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HAY9042358.1"
                     /translation="MGLFDKLKSLVSDDKKDTGTIEIIAPLSGEIVNIEDVPDVVFAE
                     KIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE
                     GFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLPGSVTVG
                     ETPVIRIKK"
BASE COUNT         2650 a         2802 c         2686 g         2718 t
ORIGIN      
        1 tgcgatttgt aagattgatt tttcttctca agttccttgt tcttctaccg atattacctc
       61 gtacagtgac gaggactgaa caatggccac tatctcttca acttcaattc cttccataca
      121 aacacagagt agtaacaggg catcacaagg tagcgatgtt gcttcacaaa tcgcgcggat
      181 aagtcagcaa atcatcaaac tcactcaaca aattaaagag attgtagaca ctagcggcag
      241 tgctgaagac aagcaaaaac aggccgaatt gattcaacag caaatcaccc tactggaaac
      301 acaactggcg cagttgcaga aacagcaggc agaaaaggcg caggagaaag agcagcgttt
      361 gtctctggat gtatcccttc taaatcctgt tgaaaaaacg actcatatcg atatctatat
      421 ctgatacaac ggatcccctt cccgaccagc cattagcgca ttgccctggt ctcgtaccac
      481 gtcccataac gcttcagcgg cggtggaaag tgaacggttc ttcctgcgca ccagcatcaa
      541 ctggcgttca acaaccggcg taatgcgctt taccaccagt gggctacctt caggcaatag
      601 tagcgccagt gcgggaagaa tactgatgcc gatgcctgcg gctaccatcg ggaacagcgt
      661 cgccggatgt ccaatctcct gcacaatatt cgcctgaata ccattgcgcg ccagcgctgc
      721 gtcaatcagc ggtcggctgc ctgacgcgta atcctgcaac accaatttcg ctccctgtaa
      781 tgcctgccag ggtacataat cttccacggc caaagcgcta tcgcgatggc aaagcagaaa
      841 gaaaggctcg gaaagaatcg cttcacattg cagatcgccc actgggcctg gatcgatgac
      901 gatgccaaag tcgacatctc cctggcgaat actttccatc acccactgct gcggacgatc
      961 gtgcaggaca aactgaatat ctggatagcg gcgatggctt tcagcaatgc attgcggaat
     1021 aagatgcgcg gaaatggtct ggctggcagc gacccgaact tttccgctca gttgttgccc
     1081 catacgcccg gtatcgcgca acgtgctgtt aagttcatcc agcagtcgct caagacgcaa
     1141 agccaactgc tgccctgcat ctgtaagcac cacttcacgc gtggttctgt ccagcaggcg
     1201 aacaccagta tgattttcca gctccttcac actgtgactt actgccgact ggctcaagcc
     1261 gatacgctct cctgcacgac taaaactttt ctcctgcgct actgtgacga aaacctttaa
     1321 ttgttttaaa gaataattca tctgttttct tcatgaatgg atgcaataaa tcaattttat
     1381 ttctcaaact ggaagaagca caatagaacc atcgatcatc tggagtcttt atgaaacttt
     1441 ttcgtatcct cgatcctttc accttaaccc tgatcacggt ggtgttgctg gcctctttct
     1501 ttccggccag aggcgatttc gtccccttct ttgaaaatct gaccaccgca gctattgccc
     1561 tgctgttctt tatgcacggc gcgaagttgt cgcgtgaggc gattattgct ggcggtggtc
     1621 actggcgact gcatttgtgg gtaatgtgca gcaccttcgt gctgtttccg attctgggtg
     1681 tactgtttgc ctggtggaaa ccggtaaatg tcgacccgat gctctactcc ggttttctct
     1741 acttgtgcac tctcccggct accgtgcagt ctgcaatcgc cttcacgtca atggcgggcg
     1801 gtaacgtcgc ggcggcggtt tgttctgcgt cagcatccag cctgctggga attttccttt
     1861 caccattgct ggttggtctg gtgatgaatg ttcacggtgc agggggcagc cttgagcagg
     1921 tcggtaaaat tatgctgcaa ctgctgctgc cgtttgtgtt ggggcatctt tcccggccgt
     1981 ggattggtga ctgggtgtcg cgcaataaaa aatggattgc gaaaactgac cagacgtcca
     2041 ttctgttggt ggtttataca gcgttcagcg aagccgtcgt taatggtatc tggcataaag
     2101 ttggctgggg atcattgctg tttatcgtgg tggtcagctg cgttcttctg gctatcgtga
     2161 ttgtagttaa cgtctttatg gcacgccgac tgggcttcaa taaggcagat gaaattacta
     2221 tcgtcttttg tggttcgaaa aagagtctgg caaatggcat cccgatggca aacattctgt
     2281 tccccacatc ggtgatcggt atgatggtgc tgcccctgat gattttccat cagatccaat
     2341 tgatggtctg tgcggtgctg gcgcgtcgat acaaacgcca gaccgaacag ttacaggcgc
     2401 agcaggaaag cagcgccgat aaagcttaaa gcggacgctt caggggctgg accagttgcg
     2461 tcagcccctc ggttttaatc agcagcgtga tttgcattag ctcaccgagc ttccctgccg
     2521 ggaactcatc tttgcgggca aaccacagca gatactcctc cggcaggtcg attaagcgac
     2581 gccctttgta tttgccaaac ggcattatcg tattggctat ttcaatcagc tgctcttttt
     2641 ccatctcagc tacccagcaa acgcagcatt tccgcttcgt cgatgacttc aatgcccagt
     2701 tcctgcgcct tcgccagttt agatcctgca gcttcacccg caatcaccag atcggttttc
     2761 ttcgacacgc tgcccgcgac tttcgcgccc agttcgacca gtcgagcttt agcgtcatca
     2821 cgcgacatct ggcttaagct gcccgtaagc accacggttt taccagcaaa cgggctgtca
     2881 atctcttccg cgttgataac gatcggcgca ggccagtgaa caccttccgc caacagctcg
     2941 ctgatgacat tgcggttgct ttcttcggca aagaagttgt gaacgtggga tgcaacgaca
     3001 atgccaacat caggcacctt ttgcagctct tcaatcgaag cggcttccag cgcttccagc
     3061 gtgccgaaat atgccgccag acctgctgcg gtggcctcgc cgacttcacg gatgccaagt
     3121 gcatagagga agcgagcaaa ggtggtttct ttcgcttttt ccagcgcgtt aaccacgttt
     3181 tgtgccgatt ttggccccat acgctccagt ccggtcagtt tgcctgcggt gagtttgaac
     3241 agatctgccg gagtgtggac atattctttt tcaaccagct gatcgatgat tttgtcgccc
     3301 attccgtcaa catccatcgc acggcgggaa acaaagtgtt tcagcgactc tttacgctgc
     3361 gcaccgcaaa tcaggccacc ggtacagcgg gcaaccgctt caccttccac acgctcaacg
     3421 tcagaaccac ataccggaca atgcgtcggg aatacaacct cacgggtatc ttccgggcgt
     3481 tcagaaagca cgacgttaac cacctgcggg atcacgtcgc cagcgcggcg aatcaccact
     3541 ttatcgccaa tgcgtaaacc aagacgttcg atttcatccg cattgtgtaa ggttgcgtta
     3601 ctcaccagca cgccagcaac atggacaggt tccagacgcg caacaggcgt aatcgcgcca
     3661 gtacgcccaa cctgaaactc gacgtcacgc acaaaggtca tctgctcctg cgccgggaat
     3721 ttaaacgcta ccgcccagcg cggggcacgc gcgacaaagc caagctgctc ctgctgttcc
     3781 agtgagttga ccttaatcac cacgccgtcg atatcaaagc ccagcgtcgg gcggtcttct
     3841 tccactttgt gatagaacgc cagcacttct tccgccgatt cacaaagcgt tacccgatcg
     3901 ctgaccggca acccccactt tttaaattgc agtaaacggc caagatgagt atccggcagc
     3961 tcgccacctt ccagaacacc aacgccatag cagaaaaaag tgagcggtcg cttcgctgta
     4021 atacgcggat caagctgacg cagtgaacca gctgccgcat tacgtgggtt agcaaaaact
     4081 ttcccgcccg tgcgtcgcgc atcttcgtta atcttttcga accccgcctg cggcaggaac
     4141 acttcaccac gcacttccag acgcgccggg atattctctc catgcagctt cagcggaatg
     4201 gcgcgaatag tacgcacatt agacgtgata tcttccccgg tggtgccatc gccacgggtc
     4261 gcggcactga ctaaaacgcc attttcatac agaatactga cggcaaggcc atccagcttc
     4321 agctcacagc accaggtgac tttctcgttg tttttcagac ggtcctgcac acgtttgttg
     4381 aaagcaagaa agctttcttc atcaaaaacg ttatccagtg acagcattgg tacttcatgg
     4441 cgtatctggc tgaaagccgc cagcggcgca gcacctacac gttgggtagg cgaatcaggc
     4501 gtaatcagtt ctggatgttt agtttccagc tcgcgcagtt cgcgcatcag cctgtcgtat
     4561 tcagcgtcgg gaatttccgg cgcatccatc acatgataaa gatattcatg atggcgaagc
     4621 gtcgttcgca gttctgtcag ttgttgttcg attgattcca tatcgcacca tcaatgctaa
     4681 aaacccccga caagcggggg ttcgaagaag agttaatttg ccttaagtgt atcaggcgtt
     4741 ggcgtctttg acttcgcgga tgatgtcctg gtactcgcgc aatttctgcg gagtcatcat
     4801 acggcgctga tcgtcaagca cgacaccgcc cacttcatcg gcaatatgct gcgcagattg
     4861 cagcatcagc ttgaagttct gcagctcgtc accgtaagac ggtacctgca taaagatagt
     4921 gacacccgga gtagtgaaat ccttcatttc aggatcaaag gttcccggtt tcaccatatt
     4981 cgccaggctg aataacgccg ggccgctgcc atccgggcta agatgacgat ggtaaatatt
     5041 catatcgcca aaaatgaagc ccgcttgttg aatgctgtta agaagcagtt caccgtttag
     5101 ctcgctaccg tgatgcgccg cgacgttcat gataatcacc gcttctttgc gcttcggttt
     5161 atccataact ggagccggtt ccgctacagg ctcaggctgt ggtgccgcta cgggttctgc
     5221 aggctggaaa gcctgttgtg ccggttgcgg tgctgaatgc acaggctgcg gcgctggcgc
     5281 gacctgtggc gaaactggct gctgcaacgg ctgttcaggc tgcggctgat agacaggctg
     5341 ctgcaccggc tgcgctggac gcggagcatg ttgcggcggt acctgcgctt caggcggctg
     5401 ctggaccggt tgacgcggct gcgcagacgc ataaggcggt tggtactggt gttgcggcga
     5461 cggacgagca gcctcatgct cctgagcgtt agccggggca tgattcacgc ggtgaacacg
     5521 aacctcacca acgccctcat catcttcgac atcctcgtca taagaatcgt cgtcacgttt
     5581 tgacttcatt cgttttaatg gccgatcgcg gaacatagaa gatcgttctt tacggctggt
     5641 ccagaaacca tgtaccagta aagcgattat ggcgatcgcg ccaacaatga ttaatatcag
     5701 acgcaaatcc tgcatcatta tattctctgt tgttctaaca ccttgccaca acggcaaaca
     5761 tttactcact aagagtattt gccgattacc tcaagtgcaa gtgcactatt aactttcaca
     5821 gcacaaagat agatgaaatc gtgctttttg ctgttttttc gaacatatcc taactgtcca
     5881 ttgcgcaatt acccggtaaa atacgcagaa ttttcctagg attggtcaaa aggagctcat
     5941 cctgattatg gtttcatcat tcacatctgc cccacgcagc ggtttttact attttgcgca
     6001 aggctggaag ctcgtctcgc aacctgggat tcggcgtttc gttattttac cgctgctggt
     6061 caatattttg ttgatggggg gcgcattctg gtggctcttt acacagctcg atgtctggat
     6121 cccgactctc atgagttacg ttccggactg gctacaatgg ctgagttatc tgttgtggcc
     6181 tctggctgtc atctctgtgc tgttagtgtt tggctatttc ttctccacga ttgctaactg
     6241 gattgccgct ccgtttaacg gtttattggc tgaacaactg gaagcacgat tgactggcgc
     6301 tacaccgcca gataccggga ttttcggtat catgaaagat gtgccgcgaa tcatgaaacg
     6361 cgaatggcaa aaatttgcct ggtatctgcc gcgcgcaatt gtattactaa ttctttactt
     6421 catccctggt attgggcaaa ccgtcgcgcc ggtactgtgg ttcctgttta gcgcctggat
     6481 gttagccatc cagtattgcg attacccctt cgataaccac aaagtgccgt ttaaagagat
     6541 gcgcaccgcc ctgcgcacac gcaaaatcac caatatgcag tttggtgctt taaccagcct
     6601 gtttacgatg atcccgctgc ttaatctgtt catcatgccc gttgccgttt gtggcgcgac
     6661 ggcgatgtgg gtcgattgct atcgcgataa acacgcgatg tggcggtaac aatctaccgg
     6721 ttattttgta aaccgtttgt gtgaaacagg ggtggcttat gccgcccctt attccatctt
     6781 gcatgtcatt atttcccttc tgtatataga tatgctaaat ccttacttcc gcatattctc
     6841 tgagcgggta tgctacctgt tgtatcccaa tttcatacag ttaaggacag gccatgagta
     6901 agatttttga agataactcg ctgactatcg gtcacacgcc gctggttcgc ctgaatcgca
     6961 tcggtaacgg acgcattctg gcgaaggtgg aatctcgtaa ccccagcttc agcgttaagt
     7021 gccgtatcgg tgccaacatg atttgggatg ccgaaaagcg cggcgtgctg aaaccaggcg
     7081 ttgaactggt tgaaccgacc agcggtaata ccgggattgc actggcctat gtagctgccg
     7141 ctcgcggtta caaactcacc ctgaccatgc cagaaaccat gagtattgaa cgccgcaagc
     7201 tgctgaaagc gttaggtgca aacctggtgc tgacggaagg tgctaaaggc atgaaaggcg
     7261 caatccaaaa agcagaagaa attgtcgcca gcaatccaga gaaatacctg ctgctgcaac
     7321 aattcagcaa tccggcaaac cctgaaattc acgaaaaaac caccggtccg gagatctggg
     7381 aagataccga cggtcaggtt gatgtattta ttgctggcgt tgggactggc ggtacgctga
     7441 ctggcgtcag ccgctacatt aaaggcacca aaggcaagac cgatcttatc tctgtcgccg
     7501 ttgagccaac cgattctcca gttatcgccc aggcgctggc aggtgaagag attaaacctg
     7561 gcccgcataa aattcagggt attggcgctg gttttatccc ggctaacctc gatctcaagc
     7621 tggtcgataa agtcattggc atcaccaatg aagaagccat ttctaccgcc cgtcgtctaa
     7681 tggaagaaga aggtattctt gcaggtatct cttctggagc agctgttgcc gcggcgttga
     7741 aactacaaga agatgaaagc tttaccaaca agaatattgt ggttattcta ccatcatcgg
     7801 gtgagcgtta tttaagcacc gcattgtttg ccgatctctt cactgagaaa gaattgcaac
     7861 agtaatgcca gcttgttaaa aatgcgtaaa aaagcacctt tttaggtgct tttttgtggc
     7921 ctgcttcaaa ctttcgcccc tcctggcatt gattcagcct gtcggaactg gtatttaacc
     7981 agactaatta ttttgatgcg cgaaattaat cgttacagga aaagccaaag ctgaatcgat
     8041 tttatgattt ggttcaattc ttcctttagc ggcataatgt ttaatgacgt acgaaacgtc
     8101 agcggtcaac acccgccagc aatggactgt attgcgctct tcgtgcgtcg cgtctattaa
     8161 aaactggcgc taacaataca ggctaaagtc gaaccgccag gctagacttt agttccacaa
     8221 cactaaacct ataagttggg gaaatacaat gttccagcaa gaagttacca ttacagctcc
     8281 gaacggtctg cacacccgcc ctgctgccca gtttgtaaaa gaagctaagg gcttcacttc
     8341 tgaaattact gtgacttcca acggcaaaag cgccagcgcg aaaagcctgt ttaaactgca
     8401 gactctgggc ctgactcaag gtaccgttgt gactatctcc gcagaaggcg aagacgagca
     8461 aaaagcggtt gaacatctgg ttaaactgat ggcggaactc gagtaatttc ccgggttctt
     8521 ttaaaaatca gtcacaagta aggtagggtt atgatttcag gcattttagc atccccgggt
     8581 atcgctttcg gtaaagctct gcttctgaaa gaagacgaaa ttgtcattga ccggaaaaaa
     8641 atttctgccg accaggttga tcaggaagtt gaacgttttc tgagcggtcg tgccaaggca
     8701 tcagcccagc tggaaacgat caaaacgaaa gctggtgaaa cgttcggtga agaaaaagaa
     8761 gccatctttg aagggcatat tatgctgctc gaagatgagg agctggagca ggaaatcata
     8821 gccctgatta aagataaaca catgacagct gacgcagctg ctcatgaagt tatcgaaggt
     8881 caggcttctg ccctggaaga gctggatgat gaatacctga aagaacgtgc ggctgacgta
     8941 cgtgatatcg gtaagcgcct gctgcgcaac atcctgggcc tgaagattat cgacctgagc
     9001 gccattcagg atgaagtcat tctggttgcc gctgacctga cgccgtccga aaccgcacag
     9061 ctgaacctga agaaggtgct gggtttcatc accgacgcgg gtggccgtac ttcccacacc
     9121 tctatcatgg cgcgttctct ggaactgcct gctatcgtgg gtaccggtag cgtcacctct
     9181 caggtgaaaa atgacgacta tctgattctg gatgccgtaa ataatcaggt ttacgtcaat
     9241 ccaaccaacg aagttattga taaaatgcgt gctgttcagg agcaagtggc ttctgaaaaa
     9301 gcagagcttg ctaaactgaa agatctgcca gctattacgc tggacggtca ccaggtagaa
     9361 gtatgcgcta acattggtac ggttcgtgac gttgaaggtg cagagcgtaa cggcgctgaa
     9421 ggcgttggtc tgtatcgtac tgagttccta ttcatggacc gcgacgcgct gcccactgaa
     9481 gaagaacagt ttgctgctta caaagcagtg gctgaagcgt gtggctcgca ggcggttatc
     9541 gttcgtacca tggacatcgg cggcgacaaa gagctgccat acatgaactt cccgaaagaa
     9601 gagaacccgt tcctcggctg gcgcgctatc cgtatcgcga tggatcgtaa agagatcctg
     9661 cgcgatcaac tccgcgctat cctgcgtgcc tcggctttcg gtaaattgcg cattatgttc
     9721 ccgatgatca tctctgttga agaagtgcgt gcactgcgca aagagatcga aatctacaaa
     9781 caggaactgc gcgacgaagg taaagcgttt gacgagtcaa ttgaaatcgg cgtaatggtg
     9841 gaaacaccgg ctgccgcaac aattgcacgt catttagcca aagaagttga tttctttagt
     9901 atcggcacca atgatttaac gcagtacact ctggcagttg accgtggtaa tgatatgatt
     9961 tcacaccttt accagccaat gtcaccgtcc gtgctgaact tgatcaagca agttattgat
    10021 gcttctcatg ctgaaggcaa atggactggc atgtgtggtg agcttgctgg cgatgaacgt
    10081 gctacacttc tgttgctggg gatgggtctg gacgaattct ctatgagcgc catttctatc
    10141 ccgcgcatta agaagattat ccgtaacacg aacttcgaag atgcgaaggt gttagcagag
    10201 caggctcttg ctcaaccgac aacggacgag ttaatgacgc tggttaacaa gttcattgaa
    10261 gaaaaaacaa tctgctaatc cacgagatgc ggcccaattt actgcttagg agaagatcat
    10321 gggtttgttc gataaactga aatctctggt ttccgacgac aagaaggata ccggaactat
    10381 tgagatcatt gctccgctct ctggcgagat cgtcaatatc gaagacgtgc cggatgtcgt
    10441 ttttgcggaa aaaatcgttg gtgatggtat tgctatcaaa ccaacgggta acaaaatggt
    10501 cgcgcctgta gacggtacca ttggtaaaat ctttgaaacc aatcacgcgt tctctatcga
    10561 atctgatagc ggcgttgaac tgttcgtcca cttcggtatc gacaccgttg aactgaaagg
    10621 cgaaggcttc aagcgtattg cagaagaagg tcagcgcgtg aaagttggcg atactgtcat
    10681 tgaatttgat ctgccgctgc tggaagagaa agccaagtct accctgactc cggttgttat
    10741 ctccaacatg gacgaaatca aagaactgat caaactgccc ggtagcgtaa ccgtgggtga
    10801 aaccccggtt atccgcatca agaagtaatt cttgccgcag tgaaaaatgg cgccca
//
LOCUS       DADMJB010000144        10693 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.146, whole genome shotgun sequence.
ACCESSION   DADMJB010000144 DADMJB010000000
VERSION     DADMJB010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10693)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10693)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10693
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.146"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(88..237)
                     /gene="hokB"
                     /locus_tag="JN078_003262"
     CDS             complement(88..237)
                     /gene="hokB"
                     /locus_tag="JN078_003262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokB"
                     /protein_id="HAY9042359.1"
                     /translation="MKHNPLVVCLLIICITILTFTLLTRQTLYELRFRDGDKEVAALM
                     ACTSR"
     gene            636..2249
                     /gene="trg"
                     /locus_tag="JN078_003263"
                     /pseudo
     CDS             636..2249
                     /gene="trg"
                     /locus_tag="JN078_003263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415938.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein Trg"
     gene            complement(2287..3209)
                     /locus_tag="JN078_003264"
                     /pseudo
     CDS             complement(2287..3209)
                     /locus_tag="JN078_003264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310054.2"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            3426..4769
                     /locus_tag="JN078_003265"
     CDS             3426..4769
                     /locus_tag="JN078_003265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HAY9042360.1"
                     /translation="MANSITADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVL
                     ENNPQLHEKMVNADELARLNVERHGAIRVGTAQELATLRRMFAIMGMYPVSYYDLSQA
                     GGPVHSTAFRPIDDASLARNPFRVFTSLLRLELIENEILRQKAAEILRQRDIFTPRCR
                     QLLEEYEQQGGFNETQAQEFVQEALETFRWHQSATVDEETYRALHNEYRLIADVVCFP
                     GCHINHLTPRTLDIDRVQSMMPECGIEPKILIEGPPRREVPILLRQTSFKALEETVLF
                     AGQKQGTHTARFGEIEQRGVALTPKGRQLYDDLLRNAGTGQDNLTHQMHLQETFRTFP
                     DSEFLMRQQGLAWFRYRLTPSGEAHRQAIHLGDDPQPLIERGWVVAQPITYEDFLPVS
                     AAGIFQSNLGNETQTRSHGNASREAFEQALGCPVLDEFQLYQEAEERSKRRCGLL"
     gene            4994..6649
                     /locus_tag="JN078_003266"
     CDS             4994..6649
                     /locus_tag="JN078_003266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucan biosynthesis protein"
                     /protein_id="HAY9042361.1"
                     /translation="MDRRRFIKGSMAMAAVCGTSGIASLFSQAAFAADSDIADGQTQR
                     FDFSILQSMAHDLAQTAWRGAPRPLPDTLATMTPQAYNSIQYDAEKSLWHNVENRQLD
                     AQFFHMGMGFRRRVRMFSVDPATHLAREIHFRPELFKYNDAGVDTKQLEGQSDLGFAG
                     FRVFKAPELARRDVVSFLGASYFRAVDDTYQYGLSARGLAIDTYTDSKEEFPDFTAFW
                     FDTVKPGATTFTVYALLDSASITGAYKFTIHCEKSQVIMDVENHLYARKDIKQLGIAP
                     MTSMFSCGTNERRMCDTIHPQIHDSDRLSMWRGNGEWICRPLNNPQKLQFNAYTDNNP
                     KGFGLLQLDRDFSHYQDIMGWYNKRPSLWVEPRNKWGKGTIGLMEIPTTGETLDNIVC
                     FWQPEKAVKAGDEFAFQYRLYWSAQPPVHCPLARVMATRTGMGGFPEGWAPGEHYPEK
                     WARRFAVDFVGGDLKAAAPKGIEPVITLSSGEAKQIEILYIEPIDGYRIQFDWYPTSD
                     STDPVDMRMYLRCQGDAISETWLYQYFPPAPDKRQYVDDRVMS"
     gene            6789..7013
                     /locus_tag="JN078_003267"
     CDS             6789..7013
                     /locus_tag="JN078_003267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415943.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HAY9042362.1"
                     /translation="MFPEYRDLISRLKNENPRFMSLFDKHNKLDHEIARKEGFDGRGY
                     NAEVVRMKKQKLQLKDEMLKILQQESVKGV"
     gene            7076..7612
                     /gene="rimL"
                     /locus_tag="JN078_003268"
     CDS             7076..7612
                     /gene="rimL"
                     /locus_tag="JN078_003268"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12-serine
                     acetyltransferase"
                     /protein_id="HAY9042363.1"
                     /translation="MTETIKVSESLELHAVAESHVTPLYQLICKNKTWLQQSLNWPQF
                     VQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVISFNRIEPLNKTAEIGYWLDE
                     SHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPQSNQVALRNGFILEGCLKQAE
                     FLNDAYDDVNLYARIIDS"
     gene            complement(7607..8587)
                     /locus_tag="JN078_003269"
                     /pseudo
     CDS             complement(7607..8587)
                     /locus_tag="JN078_003269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707644.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LbetaH domain-containing protein"
     gene            8711..9703
                     /gene="tehA"
                     /locus_tag="JN078_003270"
     CDS             8711..9703
                     /gene="tehA"
                     /locus_tag="JN078_003270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate transporter/tellurite-resistance
                     protein TehA"
                     /protein_id="HAY9042364.1"
                     /translation="MQSDKVLNLPAGYFGIVLGTIGMGFAWRYASQVWQVSHWLGDGL
                     VILAMIIWGLLTSAFITRLIRFPHSVLAEVRHPVLSSFVSLFPATTMLVAIGFVPWFR
                     PLAVCLFSFGVVVQLAYAAWQTAGLWRGSHPEEATMPGLYLPTVANNFISAMACGALG
                     YTDAGLVFLGAGVFSWLSLEPVILQRLRSSGELPTALRTSLGIQLAPALVACSAWLSV
                     NGGEGDTLAKMLFGYGLLQLLFMLRLMPWYLSQPFNASFWSFSFGVSALATTGLHLGS
                     GSENGFFHTLAVPLFIFTNFIIAILLIRTFALLMQGKLLVRTERAVLMKAEDKE"
     gene            9700..10293
                     /gene="tehB"
                     /locus_tag="JN078_003271"
     CDS             9700..10293
                     /gene="tehB"
                     /locus_tag="JN078_003271"
                     /EC_number="2.1.1.265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance methyltransferase TehB"
                     /protein_id="HAY9042365.1"
                     /translation="MIIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRN
                     SLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILST
                     VVLMFLEAKTIPGLIANMQRCTKLGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYY
                     EGWERVKYNEDVGELHRTDANGNRIKLRFATMLARKK"
     gene            10596..>10693
                     /locus_tag="JN078_003272"
     CDS             10596..>10693
                     /locus_tag="JN078_003272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3313 domain-containing protein"
                     /protein_id="HAY9042366.1"
                     /translation="MRTTSFAKVAALCGLLALSGCASKITQPDKYSG"
BASE COUNT         2736 a         2496 c         2712 g         2749 t
ORIGIN      
        1 aacatgcact aactgaagtg taaaaggggt gccatgagaa aatgaatctg ctagtcagat
       61 gcgcggggaa aatccccgcg cttgccctta cctggacgtg caggccatga gcgcagcaac
      121 ctccttatca ccgtcccgga accgcagttc gtagagcgtt tgtcgggtca ggagtgtgaa
      181 tgtcagaatc gtaatgcaga taatgagcag acacaccacc agagggttgt gcttcatagc
      241 ctttctcctt gccggatggc gggtaagagg ctaagatctg aattgctagg ttcattcgtt
      301 ggcctcggtt gatagaaata tcggtcgggg ccttcgtctt tctgattccc ggttagcctg
      361 aaaacagaaa gtctcaggca cccgcaggca tcctatgagg tttccttagg gacgaaaata
      421 atcacttcac gaaattgcgt gctgttttcc agaatttttc gtcattcgga ttagccagtt
      481 tagccattcg ttactctctt cattccaata gcattaattt tctctgcaat aattgttgta
      541 aaaatgtgac gcaaagaggt ttttggtcat aagtaattac cgtcaagtgc cgatgacttt
      601 ctatcaggag taaacctgga cgagagacaa cggtaatgaa tacaactccc tcacagcgat
      661 taggtttttt gcatcacatc aggctggttc cgttatttgc ctgcattctt ggcggtatct
      721 tagttctatt cgcattaagt tctgctctgg caggccgatc gcgatcagcg tgatgttact
      781 gcggagattg agattcggac cgggttagcg aacagttcag attttttgcg ttcagcccgg
      841 atcaatatga ttcaggccgg ggctgcgagt cgtattgcgg aaatggaagc aatgaagcga
      901 aatattgcgc aagccgaatc ggagattaaa cagtcgcagc aaggttatcg tgcttatcag
      961 aatcgaccgg tgaaaacacc tgctgatgaa gccctcgaca ctgaattaaa tcaacgcttt
     1021 caggcttata tcacgggtat gcaacctatg ttgaaatatg ccaaaaatgg catgtttgaa
     1081 gcgattatca atcatgaaag tgagcagatc cgaccgctgg ataatgctta taccgatatt
     1141 ttgaacaaag ccgttaagat acgtagcacc agagccaacc aactggcgga actggcccat
     1201 cagcgcaccc gcctgggtgg gatgttcatg attggcgcgt ttgtgcgtgc cctggtcatg
     1261 acgctgataa catttatggt gctacgtcgg atcgtcattc gtccactgca acatgccgca
     1321 caacggattg aaaaaatcgc cagtggcgat ctgacgatga atgatgaatc ggcgggtcgt
     1381 aatgaaatcg gtcgcttaag tcgtcattta cagcaaatgc agcattcact ggggatgaca
     1441 gtagggactg ttcgacaggg cgcggaagag atttatcgtg gcaccagcga aatttcagct
     1501 ggcaatgcgg acctgtcatc tcgcaccgaa gaacaagcgg cggctatcga acaaactgcc
     1561 gccagcatgg agcaactcac tgcgacggtg aaacagaatg cggataacgc gcatcatgcc
     1621 agcaaactgg cgcaagaggc ttctattaaa gccagcgatg gcgggcagac ggagtaaaaa
     1681 cgatgggcgc tatctccacg agttcgaaga aaatttctga gatcaccgcc gtcatcaaca
     1741 gtattgcttt ccagacgaat attctggcac tgaatgctgc cgttgaagcc gcgcgagcgg
     1801 gtgagcaagg gcgtggattt gccgttgtcg ccagcgaagt acggacactc gcaagtcgca
     1861 gcgctcaggc ggcgaaagag attgaaggct tgatcagtga atcagtcagg ttaattgacc
     1921 tggggtcgga tgaggtggca acggccggga aaaccatgag cactattgtt gatgccgtcg
     1981 cgagtgtcac acatatcatg caggaaatcg ccgccgcctc ggatgaacaa agtagaggca
     2041 taacgcaggt tagccaggcg atttctgaaa tggataaggt gacgcaacag aatgcttctc
     2101 tggtagaaga ggcctcagcg gcggcggtgt cccttgaaga acaggcggca cgattaactg
     2161 aggcggtgga tgtattccgt ctgaacaaac attctgtgtc ggcagaacct cgcggagcgg
     2221 gtgaaccagt tagtttcgct acggtgtgaa aatgttcaag gagggatcga cagatccctt
     2281 cacctttcag aacggcattg attttcgaat agcgttaatc atcaactggc aaccagaaga
     2341 gaacatcgca tctacgcggg tcagtattcc aatcggttcg cctgcaccat gtcccggaac
     2401 aggctgggcc accagcgtgg catgacgcag gtcgtctttt accgcgccag aagggacaaa
     2461 ccacacgtag tcgtattcaa ccgtaagttg acgagatagc gaagcagaca gcgtttcgat
     2521 acaacccgaa ggaattttac atccctggct ctgtactaat gcatctgaat gctggcgtgg
     2581 cgcagtgcct tctggtgata caacgaccgg ccatttcagc actcggctta gcgttacgtt
     2641 ctcctgaagt agcgggtgat tagggcggac aaccagcttc agcgattcaa gaaacagcag
     2701 ttcgtaatta agcccggtca tcagttcagg atctgacatc cgaccaatgc cgatatcgat
     2761 ttccccggtt ttcaaacccg ccagaatcat agggttactc attgtcgcaa cttgcaaggt
     2821 cgtctctttt tgttgctgat gaaactgacc tataaccgaa ggtaatatcc ccagtgccgc
     2881 agtaggtagt gcaccaatcc tgacgacatc attattaaga ccttctttac gatgaagcga
     2941 ctgtccggca gtgttgatgg cgtcaagaac tctgactgca tgcgttaaaa attgttcgcc
     3001 gggtaaggta agttgcgccc cctgacgacc acgctcaaac aagcgagcgc ccgtcagctg
     3061 ctacagttca ttcaatgtct tagagagcgc aggttgactc aaattaaggg tttcagccgc
     3121 gcccccaaag ttccttgttg tgcgacagct acgaatgtat gaaggtggcg caaacggatg
     3181 cgctgactaa acagactatt tttttccata agcgatgtta aaaacgaagc ggtgtcgctg
     3241 acaagtgaag ttgtttgatt atgataactt gattgcaaaa tataattaac aattaaagca
     3301 attgtgttac agcaaaatgg ataatattga tgttttcgcg gcgagatcac agtttgtaaa
     3361 ttcttcccgc cagagtgaat gcggttacct acactccaga ttactgacca ctggaggcag
     3421 acactatggc gaacagcatc acggcggatg agattcggga acagttttcg caggcaatgt
     3481 cagccatgta ccagcaagaa gttccgcagt acggcacgct gctggaactg gtagctgatg
     3541 tgaatctggc tgtgctggaa aacaatcctc aactgcacga aaaaatggta aatgcagatg
     3601 agctggcgcg actgaatgtt gaacgtcatg gggcgattcg cgttgggact gcacaagagc
     3661 ttgctactct tcggcggatg tttgccatta tggggatgta cccggtgagc tattacgatc
     3721 tctcgcaggc aggggggccg gtacattcga cagcatttcg gcccattgat gatgcttctc
     3781 tggcgcgtaa tcccttccgc gtttttacct ccttactccg ccttgagctt atcgagaacg
     3841 aaattttgcg ccagaaagcg gcggagattc tgcgtcagcg cgatatcttc accccacgtt
     3901 gtcgacaact gttagaggaa tatgagcagc agggcggttt taacgaaaca caggcacagg
     3961 aatttgtgca agaggccctg gaaacgtttc gctggcacca gtcagcaacg gtagatgaag
     4021 aaacctatcg cgccttgcac aacgaatatc ggttgattgc tgatgtggtc tgttttcctg
     4081 gatgccatat caaccacctg acgccacgta cgctggatat tgaccgggtg cagtcgatga
     4141 tgcctgaatg cggaattgaa cccaaaattc tcatcgaggg gccgccgcgc cgcgaggtac
     4201 cgattttact acgccagacc agctttaaag cactggaaga gacggtgttg tttgcggggc
     4261 agaaacaggg cacgcatacc gcgcgctttg gtgaaattga gcagcgtggc gtggcattaa
     4321 cgccgaaagg gcgacaactg tatgatgatc ttctgcgtaa cgctggaacc gggcaggata
     4381 atctcactca ccaaatgcat ttacaggaaa ccttccgcac ttttcctgac agtgagtttt
     4441 taatgcgtca gcaagggttg gcatggttcc ggtaccgtct gacgccttcg ggtgaggcgc
     4501 atcgtcaggc gattcatctt ggagatgatc cacagccttt aattgaacgt ggttgggtag
     4561 tggcgcaacc catcacctat gaagatttct tgcccgttag cgcggcgggg atcttccagt
     4621 caaatctggg taatgaaacg cagacacgca gtcacggtaa tgccagtcgc gaagcatttg
     4681 agcaggcgtt gggttgtccg gttttggatg agttccagct ttaccaggaa gcggaagaac
     4741 gcagtaaacg tcgctgtggt ttgctttaaa ttctgaccat ccgcctttgc aaaaatttgc
     4801 ctgattttac aaacgaatca ggctcatccc atcgacataa aaaaaatgcc gatttatgca
     4861 tattctctca gttcaacaat tggattatta ataaatattg tctagagtga gcggtcataa
     4921 ataagcactt tcttgccgct gaaaacgacc agcgcgggac cattcacaac accagaagga
     4981 ctcactttca ggtatggatc gtagacgatt tattaaaggt tcaatggcta tggccgccgt
     5041 gtgcggtacc agcggcattg cttctctttt ttctcaggcg gcattcgcgg cagattctga
     5101 tattgccgac gggcaaaccc agcgttttga cttctccatt ctacagtcaa tggcgcacga
     5161 cttagcgcaa acagcgtggc gtggtgcgcc tcgtccgtta cctgacacgc tggcgacaat
     5221 gacgccgcag gcttataaca gtattcaata cgacgccgaa aaatcgctct ggcataacgt
     5281 tgagaaccgt caactggacg ctcagttctt ccatatggga atgggattcc gtcgccgcgt
     5341 tcgtatgttt tctgtagatc cagcaacaca tctggcgcgt gaaattcact ttcgcccgga
     5401 gttgttcaaa tacaacgatg cgggtgttga tacaaaacaa ttagaagggc aaagcgatct
     5461 cggctttgcc ggttttcgcg tgtttaaagc ccccgaactg gcgcgccgtg atgtagtatc
     5521 atttctcggc gcgagttatt tccgcgccgt tgatgataca tatcaatacg gtttgtcggc
     5581 ccgcggcctg gcgatcgaca cttacaccga cagtaaagaa gagttccccg actttaccgc
     5641 cttctggttt gatacggtaa aaccgggggc aactaccttt accgtttatg cgttgctcga
     5701 tagcgccagc attactggtg cctataagtt cactatccat tgtgagaaaa gtcaggtgat
     5761 tatggatgtg gaaaatcacc tgtatgcgcg caaagacatt aaacagctgg gcattgcgcc
     5821 gatgaccagt atgttcagct gcggtactaa tgaacgtcgg atgtgcgata caattcatcc
     5881 gcaaattcat gactctgatc gtctgtccat gtggcggggc aacggcgagt ggatttgccg
     5941 tccgctgaat aatccgcaaa aattgcagtt caatgcttac accgacaaca acccgaaagg
     6001 gtttggttta ttgcaactgg atcgtgactt ctcccattat caggacatta tgggctggta
     6061 taacaaacgc ccaagtctgt gggtggaacc gcgtaacaag tggggtaagg gcaccatcgg
     6121 cctgatggaa atcccaacaa cgggcgaaac gctggataac attgtctgtt tctggcagcc
     6181 agaaaaagct gtaaaagcag gtgatgagtt tgcattccag tatcgtctgt actggagtgc
     6241 gcaaccgcct gttcattgcc cattagcgcg cgttatggcg acgcgtaccg gcatgggcgg
     6301 tttcccggaa ggttgggcgc caggtgaaca ctatcccgaa aaatgggcgc gtcgttttgc
     6361 cgtcgatttc gttggtggtg atctgaaagc tgccgcgcca aaaggcattg agccggtgat
     6421 tacgctttcc agtggggaag cgaagcaaat cgaaattctc tatattgaac ccatcgatgg
     6481 ttatcgtatt cagtttgact ggtatccgac ttcggactcc actgatccgg tcgatatgcg
     6541 gatgtatcta cgttgtcagg gggacgctat cagtgaaaca tggctgtatc agtatttccc
     6601 gccagcgccg gataaacgtc agtatgttga cgaccgcgtg atgagttaat cgttttttct
     6661 tcggcacctt cttcgggagg tgccgtctgg ttaaacacga tcccgctcgc atttttccct
     6721 aagttaaatg agtaatctga tggtgtgtat ttcagataca ccttgtcagc cactaacagg
     6781 gagtgcgtat gtttccagaa taccgagatt taatatcccg tctgaaaaac gaaaatcctc
     6841 gctttatgtc cttgttcgat aaacacaata aacttgatca tgaaattgcc agaaaggaag
     6901 gtttcgacgg tcgagggtac aatgcggaag tggtccgcat gaaaaaacaa aagctacagt
     6961 taaaagatga gatgctcaaa atcctgcagc aggagagcgt caaaggggtg taaactttcc
     7021 taagccgcca gccaggcggc ttttttaaca acagcatgga ttgactggag ataagatgac
     7081 tgaaacgata aaagtaagcg aatcacttga attacatgct gttgcggaaa gtcacgtcac
     7141 acctctttat cagttaatct gtaaaaataa aacctggtta cagcagtcgc taaactggcc
     7201 gcagttcgtt cagagtgaag aggacacgcg aaaaacggtg cagggtaatg tgatgttgca
     7261 tcaacgcggc tatgccaaaa tgttcatgat tttcaaagaa gatgaactta tcggcgttat
     7321 ctcgtttaat cgtattgaac cactgaataa aactgctgaa atcggctact ggctggacga
     7381 atctcatcag gggcagggga tcatttctca ggcgctgcag gcattgattc atcattacgc
     7441 tcagtctggt gaacttagac gcttcgtgat caaatgtcgg gtggacaatc cgcaaagcaa
     7501 ccaggtcgct ttgcgcaatg gttttatcct tgaaggttgc ctgaaacagg ctgagttcct
     7561 gaatgatgcc tatgatgatg tgaacttata cgcgcgtatt atcgattcat aataaccctg
     7621 ccagcggcgt tcgcgtaatg cgctcctcgc cgttaatgac ttttggacca cggacatgaa
     7681 ccgtgtcgcc atcaaaggct tcaacgacgg cgtggtcggt taactccaca tggttttcaa
     7741 ttatcaccgc acctgaaata cggctctcac cttgtattac aacgtgctcg tcgagcagaa
     7801 tcggttcacc acgtaccacg gcatttccgc caatcaagac atgatgtttt aacacacaat
     7861 taccttccac aatggcatat tccgccacct gcgaactgta atgaatcgtc ggaatggcat
     7921 cttcttctat gccagctttc acctgcgcgt gaccgtagac tttagcgcaa tcgcatagcc
     7981 agacgttgtt ctcttcatta ccttcaacac tggcaaaatc aaaaacttcg gcgcgatgtt
     8041 caataaaagc ataccggacg acggcatcgc cataaatttg tgcctggtgg acaatacgcg
     8101 aggcgctaac ccttgcgcga tcataaattt ggagcaggag ttgatggtcg ggcgttaagc
     8161 cttgtgcggc gacgatcata gaatgttgat caattaaggc gtgaccaaat attctacatt
     8221 gcccgtaaac taatgagtca tgaatggtga cactgtcact tatatatgca ccctgactga
     8281 tttcactatt atcgatccag acgttatccg ttgcgtaaac ctctccccac agcacgctgg
     8341 tgccggtgat acgcgtatta ccagaaatca ccgttccgcc gaacgcaata gcattctggt
     8401 cgtaaatcca gcaatttcct tcctatgcta acaccgtttc gcgatcgatc cagccgccag
     8461 cggttcctgc tatcacatcg ttaaaatcgc taatggcgat aatctgccgt aataacacac
     8521 tttttttagt gccatcttcc tgataactaa aggctcgctg ttcttcactt agacgatatt
     8581 tgcgcatagc gttttctcac aggtgactta ctatgaccgt agcaaattct gcggctctgg
     8641 ctatgctcga gaaaattcca taaaatgcat ttcaaatata ctttataaat taaacaaaat
     8701 gagtaagaag atgcagagcg ataaagtgct caatttgccg gcaggctact ttggtattgt
     8761 gttggggacg atagggatgg gatttgcctg gcgctatgcc agccaggttt ggcaggtcag
     8821 ccactggtta ggggatgggc tggtgattct ggcgatgatc atctggggat tattaactag
     8881 cgcatttatt acccgactca tacgctttcc gcatagcgtg ctggcggaag ttcgccatcc
     8941 agtgctgagc agttttgtga gtttgtttcc ggcaacgacg atgctggtgg cgattggttt
     9001 tgttccgtgg tttcgcccac tggcggtgtg cctgttcagt tttggtgtcg tggttcagtt
     9061 ggcttatgcc gcctggcaaa ctgcgggatt atggcgcgga tctcaccctg aagaagctac
     9121 catgcctgga ctgtatctgc cgacagttgc caacaacttt atcagcgcaa tggcctgtgg
     9181 tgcgttgggc tacaccgacg ccggtctggt gtttttaggc gcaggcgttt tctcatggct
     9241 aagccttgaa ccggtgatct tgcagcgtct gcgcagttcg ggagaattac ccacggcact
     9301 gcggacatca ctcggcattc agctcgctcc tgcgctggtg gcctgtagtg cctggttgag
     9361 cgtcaacggc ggcgagggtg atacgctggc gaaaatgctt tttggttatg gactgctgca
     9421 actgctgttt atgctacgtc tgatgccatg gtatctctcc cagccattta atgcttcatt
     9481 ctggagtttc tcgttcggcg tatctgcact ggcaaccacc ggtttgcatc tggggagtgg
     9541 cagcgaaaat ggatttttcc atacgctggc ggtaccgctg tttatcttta ccaattttat
     9601 tattgcaata ctgctcatcc gtacttttgc gcttctgatg cagggaaaat tgttagtcag
     9661 aaccgagcgc gctgttttaa tgaaagcaga ggacaaagaa tgatcattcg tgacgaaaac
     9721 tattttactg ataaatatga attaacccgc acacactctg aagtactgga agcggtgaaa
     9781 gtggttaaac cgggtaaaac gctggatctg ggctgtggca atggtcgtaa cagtctttac
     9841 ctggcagcca atggttatga tgttgacgca tgggataaaa atgccatgag tatcgccaat
     9901 gtagagcgca ttaaatccat tgaaaatctg gataatttac acacccgagt cgttgatctg
     9961 aataacctca catttgatag acagtacgat tttattcttt cgactgtggt actgatgttc
    10021 cttgaggcta aaaccatccc agggctgatt gccaatatgc aacgttgcac taaacttggt
    10081 ggttacaacc tgattgtggc ggcgatggat accgctgatt atccatgtac cgtcggcttc
    10141 ccgtttgcct tcaaagaggg agaattacgt cgatattacg aaggctggga gagggtgaaa
    10201 tacaatgaag acgtcggcga gctgcaccgc accgacgcca acggtaatcg tattaaactg
    10261 cgtttcgcca cgatgctggc acgtaaaaaa tgacccgcta agaataaggc gcgtgaaaat
    10321 tccccacgct gagatgattt actgttcttc ttttcggtaa gcatattttt tatcgaaggg
    10381 atgtgaaatt aatcacagta gtcgaagttt tttagcagct taacttactg aaatttaact
    10441 actgatgatt gacttagccc ctttttcggc attgactatg tcgtctgaaa aggggctgaa
    10501 aaatttattt tcaccaacac tttttttgcc acaacacgaa gcggcgcttt ttgctataac
    10561 ttaaaaagta atataatcat ctcaggaaac tattcatgcg taccacatca tttgcgaaag
    10621 ttgcagcttt atgcggcttg ttggctctgt ctggttgtgc ctctaaaatc acccagccag
    10681 ataaatattc tgg
//
LOCUS       DADMJB010000145        10663 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.147, whole genome shotgun sequence.
ACCESSION   DADMJB010000145 DADMJB010000000
VERSION     DADMJB010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10663)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10663)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10663
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.147"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            311..1609
                     /gene="kgtP"
                     /locus_tag="JN078_003273"
     CDS             311..1609
                     /gene="kgtP"
                     /locus_tag="JN078_003273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoglutarate permease"
                     /protein_id="HAY9042367.1"
                     /translation="MAESTVTADSKLTSSDTRRRIWAIVGASSGNLVEWFDFYVYSFC
                     SLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLLSVCM
                     MCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF
                     YASFQYVTLIGGQLLALLVVVVLQHTMEDAALREWGWRIPFALGAVLAVVALWLRRQL
                     DETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGM
                     HANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAAIFTVPILSALQNVS
                     SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANAIFGGSAEYV
                     ALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHRKGKGMRL"
     gene            complement(1606..1950)
                     /locus_tag="JN078_003274"
     CDS             complement(1606..1950)
                     /locus_tag="JN078_003274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708437.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfiM family lipoprotein"
                     /protein_id="HAY9042368.1"
                     /translation="MFFGGHVLRILFVCSLLLLSGCSHMANDSWSGQDKAQHFIASAM
                     LSAAGNEYSQHQGMSRDRSAMFGLMFSVSLGASKELWDSRPEGSGWSWKDLAWDVAGA
                     STGYTVWQLTRH"
     gene            complement(1975..3330)
                     /gene="pssA"
                     /locus_tag="JN078_003275"
     CDS             complement(1975..3330)
                     /gene="pssA"
                     /locus_tag="JN078_003275"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HAY9042369.1"
                     /translation="MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYAPADFRETLLEKI
                     ASAKQRICIVALYLEQDDGGKGILNALYKAKRQRPELDVRVLVDWHRAQRGRIGAAAS
                     NTNADWYCRMAQENSGVDVPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDVYL
                     HQHDKYRYDRYHLIRNRKMSDIMFEWVTQNIMNGRGVNRLDDVNRPKSPEIKNDIRLF
                     RQELRDAAYHFQGDADNDQLSVTPLVGLGKSSLLNKTIFHLMPCAEQKLTICTPYFNL
                     PAILVRNIIQLLREGKKVEIIVGDKTANDFYIPEDEPFKIIGALPYLYEINLRLFLSR
                     LQYYVNTDQLVVRLWKDDDNTYHLKGMWVDDKWMLITGNNLNPRAWRLDLENAILIHD
                     PQLELAPQREKELELIREHTTIVKHYRDLQSIADYPVKVRKLIRRLRRIRIDRLISRI
                     L"
     gene            complement(3444..6104)
                     /gene="pat"
                     /locus_tag="JN078_003276"
     CDS             complement(3444..6104)
                     /gene="pat"
                     /locus_tag="JN078_003276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein lysine acetyltransferase"
                     /protein_id="HAY9042370.1"
                     /translation="MSQRGLEALLRPKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPV
                     LPVTPAWKAVLGVLAWPDIASLPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSA
                     PASQHEDLRACALRHNMRLLGPNSLGLLAPWQGLNASFSPVPIKRGKLAFISQSAAVS
                     NTILDWAQQRKMGFSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFV
                     SAARSASRNKPILVIKSGRSPAAQRLLNTTAGMDPAWDAAIQRAGLLRVQDTHELFSA
                     VETLSHMRPLRGDRLMIISNGAAPSALALDALWSRNGKLATLSEETCQKLRDALPEHV
                     AISNPLDLRDDASSEHYIKTLDILLHSQDFDALMVIHSPSAAAPATESAQVLIEAVKH
                     HPRSKYVSLLTNWCGEHSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRNQKQLR
                     ETPALPSNLTSNTAEAHLLLQQAIAEGATSLDTHEVQPILQAYGMNTLPTWIASDSTE
                     AVHIAEQIGYPVALKLRSPDIPHKSEVQGVMLYLRTANEVQQAANAIFDRVKMAWPQA
                     RIHGLLVQSMANRAGAQELRVVVGHDPVFGPLIMLGEGGVEWRPEDQAVVALPPLNMN
                     LARYLVIQGIKSKKIRARSALRPLDVAGLSQLLVQVSNLIVDCPEIQRLDIHPLLASG
                     SEFTALDVTLDISPFEGDNESRLAVRPYPHQLEEWVELKNGERCLFRPILPEDEPQLQ
                     QFISRVTKEDLYYRYFSEINEFTHEDLANMTQIDYDREMAFVAVRRIDQTEEILGVTR
                     AISDPDNIDAEFAVLVRSDLKGLGLGRRLMEKLITYTRDHGLQRLNGITMPNNRGMVA
                     LARKLGFNVDIQLEEGIVGLTLNLAQREES"
     gene            complement(6136..6834)
                     /locus_tag="JN078_003277"
     CDS             complement(6136..6834)
                     /locus_tag="JN078_003277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311476.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DTW domain-containing protein"
                     /protein_id="HAY9042371.1"
                     /translation="MTENTVLQLRAERIARATRPFLARGNRVRRCQRCLLPEKLCLCS
                     TITPAQAKSRFCLLMFDTEPMKPSNTGRLIADILPDTVAFQWSRTEPSQDLLDLVQNP
                     DYQPMVVFPASYADEQREVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDNLPVIS
                     VDLSRLSAYRLREALAEGQYCTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKT
                     QHLGSITAEQLESV"
     gene            complement(6903..7322)
                     /gene="trxC"
                     /locus_tag="JN078_003278"
     CDS             complement(6903..7322)
                     /gene="trxC"
                     /locus_tag="JN078_003278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxC"
                     /protein_id="HAY9042372.1"
                     /translation="MNTVCTHCQSINRIPDDRIEDAAKCGRCGHDLFDGEVINATGET
                     LDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRF
                     GIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL"
     gene            7529..8566
                     /locus_tag="JN078_003279"
     CDS             7529..8566
                     /locus_tag="JN078_003279"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA/rRNA methyltransferase"
                     /protein_id="HAY9042373.1"
                     /translation="MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRA
                     DGGRRPARDDKQSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRR
                     QRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA
                     ELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSC
                     AHFGVKGVVVQDAALLESGAAIRTAEGGAELVQSITGDNIVNVLDDFRQAGYTVVTTS
                     SEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGV
                     LLGEWWRQNKA"
     gene            complement(8614..9303)
                     /gene="ung"
                     /locus_tag="JN078_003280"
     CDS             complement(8614..9303)
                     /gene="ung"
                     /locus_tag="JN078_003280"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HAY9042374.1"
                     /translation="MANELTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDV
                     FNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPG
                     FTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVV
                     FLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQRGETPI
                     DWMPVLPAESE"
     gene            9608..9991
                     /gene="grcA"
                     /locus_tag="JN078_003281"
     CDS             9608..9991
                     /gene="grcA"
                     /locus_tag="JN078_003281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autonomous glycyl radical cofactor GrcA"
                     /protein_id="HAY9042375.1"
                     /translation="MITGIQITKAANDDLLNSFWLLDSEKGEARCIVAKAGYAEDEVV
                     AVSKLGDIEYREVPVEVKPEVRVEGGQHLNVNVLRRETLEDAVKHPEKYPQLTIRVSG
                     YAVRFNSLTPEQQRDVIARTFTESL"
     gene            complement(10047..10634)
                     /gene="eamB"
                     /locus_tag="JN078_003282"
     CDS             complement(10047..10634)
                     /gene="eamB"
                     /locus_tag="JN078_003282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/O-acetylserine transporter"
                     /protein_id="HAY9042376.1"
                     /translation="MTPTLLSAFWTYTLITAMTPRPNNILALSSATSHGFRQSTRVLA
                     GMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSPTKEDGLQA
                     KPISFWASFALQFVNVKIILYGVTALSTFVLPQTQALSWVVGVSVLLAMIGTFGNVCW
                     ALAGHLFQRLFRQYGRQLNIVLALLLVYCAVRIFY"
BASE COUNT         2655 a         2704 c         2740 g         2564 t
ORIGIN      
        1 aaaggccatc cgtcaggatg gcctttttgc attggcgcag aaaaaatgac tgatgcgacg
       61 ctgcgcgtct tatactccca catatgccag attcagcaac ggatgcggtt tccccaactt
      121 gcctacttcc atacgtgtcc tccttaccag aatttatcct taagctcctc aataaccatt
      181 ttcctgctaa ctaaattcat ggttaatgtt gcataataat acgtaacaaa tgcataacat
      241 tttctttacc aaaagaaata aacaaaagtg accaacaaaa gcatcggatt acggcaggag
      301 acataatggc atggctgaaa gtactgtaac ggcagacagc aaactgacaa gtagtgatac
      361 tcgtcgccgc atttgggcga ttgtgggggc ctcttcaggt aatctggtcg agtggttcga
      421 tttctatgtc tactcgttct gttcactcta cttcgcccac attttcttcc cttccgggaa
      481 cacgacgact caactactac aaacagcagg tgtttttgct gcgggattcc tgatgcgccc
      541 aataggcggt tggctatttg gccgcatagc cgataaacat ggtcgcaaaa aatcgatgct
      601 gttatcggtg tgtatgatgt gtttcggatc gctggttatc gcctgcctcc caggttatga
      661 aactataggt acgtgggctc cggcattatt gcttctcgcg cgtttatttc agggattatc
      721 cgttggcgga gaatatggca ccagcgccac ctatatgagt gaagttgccg ttgaagggcg
      781 caaaggtttt tacgcatcat ttcagtatgt gacgttgatc ggcggacaac tgctagccct
      841 actggttgtc gtggttttac aacacaccat ggaagacgct gcactcagag agtggggatg
      901 gcgtattcct ttcgcgttag gagctgtgtt agctgttgtg gcgttgtggt tacgtcgtca
      961 attagatgaa acttcgcaac aagaaacgcg cgctttaaaa gaagctggat ctctgaaagg
     1021 attatggcgc aatcgccgtg cattcatcat ggttctcggt tttaccgctg cgggctccct
     1081 ttgtttctat accttcacca cttatatgca gaagtatctg gtaaatactg cgggaatgca
     1141 tgccaacgtg gcgagtggca ttatgactgc cgcattgttt gtattcatgc ttattcaacc
     1201 actcattggc gcgctgtcgg ataagattgg tcgccgtacc tcaatgttat gtttcggttc
     1261 gctggcagcc atttttaccg ttcctattct ctcagcattg caaaacgttt cctcgcctta
     1321 tgccgctttt ggtctggtga tgtgtgccct gctgatagtg agtttttata catcaatcag
     1381 tggaatactg aaggctgaga tgttcccggc acaggttcgc gcattaggcg ttggtctgtc
     1441 atatgcggtc gctaatgcta tatttggtgg ttcggcggag tacgtagcgt tgtcgctgaa
     1501 atcaatagga atggaaacag ccttcttctg gtatgtgacc ttgatggccg tggtggcgtt
     1561 tctggtttct ttgatgctac atcgcaaagg gaaggggatg cgtctttagt gacgggtcag
     1621 ttgccagacg gtatagccgg tgcttgcacc ggcgacatcc caggccaaat ccttccagct
     1681 ccagccgctc ccttcggggc ggctatccca aagctctttt gacgccccca aactgacaga
     1741 gaacatcaat ccaaacatgg cactgcgatc ccggctcatc ccctgatgct gtgaatattc
     1801 atttccggcg gcggaaagca tcgccgaggc gataaagtgt tgagctttat cctgcccgct
     1861 ccagctatcg ttagccatat ggctgcatcc agaaagtaac aatagcgaac agacaaaaag
     1921 aatacgcaaa acgtggcctc caaaaaacaa accccgtaca ggacggggtt gtgattacag
     1981 gatgcggcta attaatcggt cgatgcggat acggcgcaaa cggcggatga gtttacgaac
     2041 cttcaccgga taatcggcaa tactttgcag atcgcgatag tgcttaacga tggtggtatg
     2101 ctcgcggatc agctccagtt ctttctctcg ctgcggcgca agctccagtt gtggatcgtg
     2161 gatcaaaatg gcgttttcca gatccagacg ccaggcgcgc gggttcaggt tattaccggt
     2221 gatcaacatc cacttatcat caacccacat ccctttcagg tgataggtgt tgtcgtcatc
     2281 tttccataac cgaaccacta gctggtcagt attgacgtaa tactgcaaac ggctcaggaa
     2341 aagacgcaga ttgatctcat agagataagg caatgcgcca attatcttga aaggttcatc
     2401 ttccggaatg tagaagtcgt tcgcggtttt atcaccaaca ataatttcga cctttttccc
     2461 ttcgcgcagc aactggataa tattgcgcac aaggattgct ggcaggttga agtatggcgt
     2521 acagatggtt agtttctgct cggcacaagg cataagatgg aaaatggtct tgttcaacag
     2581 actcgatttc cccagcccca ctagcggcgt tacggaaagc tgatcgttgt cggcatcgcc
     2641 ctggaaatga taagcggcat cacgcagctc ctggcggaac agacgaatat cgttcttgat
     2701 ttccgggctt tttggccgat taacatcatc cagacgatta acgccgcggc cattcataat
     2761 attctgtgta acccattcaa acataatgtc tgacatctta cggttacgga taagatgata
     2821 acggtcgtag cgatatttat cgtgctgatg caggtaaaca tcgttcaggc tggcaccgct
     2881 ataaagtacg ctatcgtcga tgataaagcc tttaaagtgc agaacaccaa gggcttcacg
     2941 ggtattgatt ggaacgccat aaaccggaac atctacgccc gaattttcct gcgccatgcg
     3001 gcagtaccag tcagcgttag tgttagatgc cgcagcgcca atgcgtccac gttgtgcacg
     3061 atgccagtcg accagcaccc gcacatccag ttccggacgc tgccttttag ctttatacaa
     3121 cgcgttcaga atgcctttgc caccgtcatc ctgttcgaga tacagggcga caatgcaaat
     3181 gcgctgcttc gcgctggcta ttttttccag cagcgtctcc cggaagtcgg cgggagcgta
     3241 aaagaaatcg acatcatcaa ctgattgaga aatcttgggt agttgggcaa ggtgttgttg
     3301 atgtttatta cgcttaaatt ttgacaacat cacagtgcat ttcttctctg ttcattgaag
     3361 gatcctctgt gcaatgcaga cgacataagc gggcaataat aacaccagtc ccgattaagt
     3421 agtcaacatt tccagtacct tactcatgat tcctcgcgtt gggcaagatt tagcgtaagc
     3481 ccaacgatcc cctcttcgag ctggatatca acgttaaacc cgagcttgcg ggctagcgcc
     3541 accatgccac gattgtttgg catcgtaata ccattcagac gttgtagtcc gtgatctcgc
     3601 gtataggtaa tcaacttttc cattaagcgt cgacctaagc ctaacccttt gagatccgag
     3661 cgaaccagca cagcaaattc ggcatcgatg ttatcaggat cggaaatcgc acgcgtgacg
     3721 ccgaggatct cttccgtttg atcaatacgt cgtaccgcta caaacgccat ttcccgatcg
     3781 tagtcgatct gtgtcatgtt ggctaaatct tcatgggtaa attcgttgat ctcgctaaag
     3841 tagcggtaat aaagatcttc tttggtgact cgcgaaatga attgctgaag ttgtggctca
     3901 tcttctggca aaatcgggcg gaacaagcag cgttcaccgt ttttcaattc tacccattct
     3961 tccagctgat gcggataagg gcgcactgcc agccgactct cgttatcgcc ttcaaacggc
     4021 gagatatcca gcgtgacatc cagcgcggta aattcactgc cagaagccag caaaggatga
     4081 atatccagac gctgaatttc cgggcaatcg acaatcaagt tggaaacctg caccagaagc
     4141 tggctcaagc ctgcaacatc caatgggcgt agcgcactgc gcgcacgaat ctttttactt
     4201 ttgatcccct gaataaccag atagcgggcc aggttcatgt tcagcggcgg cagtgcgacg
     4261 acggcttgat cttcaggacg ccactccaca ccgccttcac ccagcatgat caacggcccg
     4321 aaaaccggat cgtgcccaac cacaacccgc aactcctgag cgccagcacg gttagccata
     4381 ctttgcacca acaggccgtg gatccgcgcc tgcggccagg ccatttttac gcgatcgaaa
     4441 atggcgtttg ccgcttgctg gacttcattg gctgtacgca agtacagcat gacgccctga
     4501 acttccgatt tatgtggaat atccggcgaa cgcaatttca gcgccaccgg ataaccaatc
     4561 tgttcggcaa tatgcaccgc ttcggtgcta tcgctggcaa tccaggtagg gagcgtgttc
     4621 atgccatacg cttgcaggat gggctgaact tcatgggtat cgagcgacgt agccccttcg
     4681 gcaatcgcct gttgcaacag aagatgcgct tctgcggtat tggaagtcag attgctgggc
     4741 aacgccggcg tttcgcgtag ttgcttctga ttacgccggt actccaccat atgcataaaa
     4801 gcagtgatgg ttccttccgg ggtacggtag gtcggcagcc cggcttcgct gaataaacgt
     4861 cgtgcctctt gcgaggagtg ctcgccgcac cagttcgtca gcaaagagac atatttgctg
     4921 cggggatgat gctttaccgc ttcaattaat acttgcgcgc tttctgttgc gggagcagcg
     4981 gcgctgggcg aatgaataac catcagcgcg tcaaaatcct ggctgtggag cagaatatcc
     5041 agcgttttaa tatagtgctc actgctggcg tcatcgcgta gatcgagcgg gttagatatt
     5101 gccacatgtt ctggcagtgc atcgcgcagt ttctggcagg tttcttcgct tagcgttgcc
     5161 agcttgccat tgcgtgacca taaggcatcc agcgccagcg cggaaggcgc agcaccgttg
     5221 ctgataatca tcagccggtc gccacgtagc gggcgcatat ggctaagggt ttccaccgcc
     5281 gaaaacagct cgtgggtgtc ctgtacccgc aacaaaccgg cacgctgaat agccgcatcc
     5341 catgccgggt ccattcctgc cgtggtgttg agcagtcgct gtgccgccgg gctacgtccg
     5401 cttttaatca ccagaatcgg tttattacgc gaggcactac gggccgccga aacaaagcgt
     5461 cgcgcgtcgc ttaactgttc gagatagagc aggatggcgc tggttttact gtcgcgtgcc
     5521 agatagtcaa gcaattcatc aacgtcgata tccaggctgt cgccgagcgc aataaagtag
     5581 gaaaagccca tcttacgctg ttgcgcccag tcgaggatgg tgttggagac ggcagccgat
     5641 tgcgaaataa acgccagctt gccgcgttta atcggcacag gcgaaaagct ggcattcaga
     5701 ccttgccagg gagccagtaa acccagactg tttggtccaa gcaggcgcat gttatggcgc
     5761 agggcgcagg cgcggagatc ttcgtgttgc gatgccgggg cggaaagaat aatgcaggtt
     5821 ttacagcctt tctcgccgag ctcttccaga agagcaagat tacggctggc attggtacat
     5881 aaaaccgcaa ggtcgggtgt aaagggcaag ctggcaatat ccggccaggc caacacaccc
     5941 aacaccgctt tccaggctgg cgtcaccggg agtaccggtc cgttaaagcc tcccgccagc
     6001 aggttacgca tcatcaggta acctgcgcga ttgggtttca tcgacgcgcc aattaccgct
     6061 atcgattttg gtcgcagtag tgcttccagt cctcgctgac tcataccggt ctcccgcaga
     6121 agtgaccgaa tgattttaaa cgctttctaa ctgttctgct gtgatgctac ccagatgttg
     6181 cgttttccct gccagatagc gtgttttaaa gcgggtaaaa tgctcgccta accctgctgc
     6241 cgccccggta tcgccggcca tatctaacag tgcgatggct acctcggcag tacaatattg
     6301 gccttcagcc agggcttcac gcaggcgata ggcagaaagc cgggaaagat cgacggaaat
     6361 gacgggaaga ttatccagat acggactttt acgaaacatc ttgcgagctt ccggccaggt
     6421 accatcgagc atgataaaca gcggtggctt accggcaggt ggtgtgaaga tcacttcccg
     6481 ttgctcatca gcatacgagg cgggaaagac caccattggc tgataatccg ggttttgtac
     6541 cagatccagc aaatcctgcg agggttcggt acgcgaccat tgaaacgcaa cggtatcagg
     6601 caaaatatca gcaatcagac gcccggtatt actgggcttc attggctcgg tgtcgaacat
     6661 cagcaaacag aagcgacttt ttgcttgtgc tggggtaatt gtcgaacaga gacataattt
     6721 ctctggcaaa agacagcgtt ggcagcgacg aacgcgatta ccgcgggcaa gaaaaggacg
     6781 tgttgcgcgc gcaatacgct cggcgcgtaa ctggagaaca gtgttttcgg tcataagaga
     6841 gcgtcgaaaa aacgccattg tcgcagagga gaaaacgggg cacaagatgc gccccggtaa
     6901 gattaaagag attcgttcag ccagctatcg aacggagctt tcggtactgc gccattaagc
     6961 atgtcgacaa cctgaccgtt tttgaaaatc atgatcgtcg gtatactacg aattccaaag
     7021 cgactgctca attcacgttc agcttcggta ttcactttca caaagcgcac tttaccgcta
     7081 cgctcttgcg cgacatcttc aaaaattggt gcgaaattac ggcaggggcc gcaccacggt
     7141 gcccagaagt cgatcaccac aggtagatca tccttcagca atttgtcgag tgtttcaccg
     7201 gtcgcattaa tcacctctcc gtcaaacaag tcgtgaccgc agcgtccgca ttttgccgca
     7261 tcttcgatcc gatcgtcggg aatgcgattg atggactgac aatgggtaca aacggtattc
     7321 ataactaacc tcgggatgag taaggagact tatcggcaac gacgccggta tgtttctaat
     7381 atgttacata ttatcgggga cattgttcca gacaacaatc tgttttattc aataggtatg
     7441 atagtcgcag gctttggtac gaaatcatgg agaaccgcgc ggacttcggg taatctgcgc
     7501 gcttcgcgca gcgctggtgg agaaaagcat gaacgatgaa atgaaaggta aaagcggcaa
     7561 ggtcaaagtg atgtatgtcc gcagtgatga tgattctgat aaacgtaccc acaacccgcg
     7621 taccgggaaa gggggcgggc gtccaggaaa atctcgtgct gacggtggcc gtcgccccgc
     7681 ccgcgatgac aaacagagtc agccccgtga ccgcaagtgg gaagattcgc cgtggcgcac
     7741 ggtttcccgc gcgccgggtg atgagacgcc ggaaaaggcc gatcacggtg gcatcagtgg
     7801 taaaagtttt attgatccgg aagtgttgcg tcgtcagcgt gcggaagaaa cccgcgtcta
     7861 cggcgaaaac gcctgtcagg cactgttcca gagccgtccg gaagcaattg ttcgcgcctg
     7921 gtttatccag agcgtaacgc cacgttttaa agaagccttg cgctggatgg cggcaaaccg
     7981 caaagcgtac catgtggtgg atgaagctga attgacaaaa gcgtcaggca cggaacatca
     8041 cggcggcgtt tgcttcctga tcaaaaagcg taacggtaca accgtgcagc agtgggtaag
     8101 ccaggcaggc gcgcaggatt gcgttctggc actggaaaac gaatctaacc cgcataacct
     8161 gggtggcatg atgcgcagct gcgcgcactt cggcgtgaaa ggtgtcgtgg tgcaggatgc
     8221 ggcactgctg gagtcggggg cggctatccg taccgcagaa ggcggcgcag agctcgttca
     8281 gtcgattact ggcgacaaca ttgttaacgt gctggatgat ttccgtcagg caggttacac
     8341 cgtagtgacc acttccagcg agcagggtaa accgctgttc aaaactagtc tgccagcgaa
     8401 aatggtactg gtgctgggtc aggaatatga agggttaccg gatgccgcac gcgatccgaa
     8461 cgatctgcgc gtgaagattg acggtacggg caacgttgcc gggctgaata tctctgtcgc
     8521 aaccggcgtt ttgcttggtg aatggtggcg tcagaataaa gcctgataaa tcagccgggt
     8581 ggcaactctg ccatccggca tttccccgca aatttactca ctctctgccg gtaatactgg
     8641 catccagtca atcggcgtct cgccacgttg ttccagccac tgatttgcca gcacaaaatg
     8701 gttgcagcca aagaatccac gatgcgccga aagcggcgac ggatgcggtg ctttcagtac
     8761 atgatggcgt tgcttatcta taatcgcccc tttcttttgc gcatgtgatc cccacaacaa
     8821 aaacaccacg ccttcgcggt gctggttaat caggctgatg actttatcag taaacgtctc
     8881 ccaaccgagg ctggcgtggg aatgcgcctg acctgcgcga accgtcaaca cagtattgag
     8941 cagcagaacg ccctgacgcg cccagctttc gagatagcca tgattagggc gggtgaagcc
     9001 cggaatagta ttttccagct ctttatacat attcaataat gacggaggaa tggcaatgcc
     9061 gggacgaacg gaaaatgcca gaccatgcgc ctgtcccggt ccgtgataag gatcctggcc
     9121 gagaatcacc actttaacgt cacccaactc ggtaaagcgg aacgcgttaa agacatcttt
     9181 ttgtggtgga tagatagtga cgccggactg ccgctcgctg gcgacggtct gaagggtatt
     9241 aagaaaataa ggttgttgct tctcttcagc cagcacgtca tgccaggtta attcgttagc
     9301 catctcgctc tcctgcgaat cttcaatccg cctagcttaa ctgcttcttt ctacagaaca
     9361 aaatcatgct cattttttag acttaaacga gtgcaaaaaa atgtaaattg gtaaaatttc
     9421 acacccgcat aagttgatgt aaaacaataa aatccattta cgaccacaat cgatgtgtgg
     9481 tttttattga tttaaatcaa agaatcaagg gtggttgagg agtatatata cactcaagca
     9541 acaatggttt taccaattag ccgcgacagg ctgaacaaat caaataattt tgccggggag
     9601 gcatcacatg attacaggta tccagattac taaagccgct aacgacgatc tgctgaactc
     9661 tttctggctg ctggacagcg aaaaaggcga agcacgttgc atcgttgcaa aagcaggtta
     9721 tgcagaagat gaagtggttg cagtaagcaa actgggtgac attgaatacc gtgaagttcc
     9781 agtagaagtg aaaccagaag ttcgcgttga aggtggtcaa cacctgaacg ttaacgttct
     9841 gcgtcgtgaa actctggaag atgcagttaa gcatccggaa aaatatccgc agctgaccat
     9901 ccgtgtatcc ggttatgcag ttcgctttaa ctctctgact ccggaacagc agcgcgacgt
     9961 tatcgctcgt acctttactg aaagcctgta aggcttaagt agcaagttac taagcggaag
    10021 agggcgacct cttccgcttt ttttcgttaa tagaaaatgc gtaccgcgca atagaccagc
    10081 aacagggcaa gcacgatatt taactggcga ccatactggc gaaacaatcg ctgaaacaga
    10141 tgccccgcca gcgcccagca cacattgcca aacgtcccaa tcatcgccag caaaacgctg
    10201 acgccaacta cccagcttag cgcctgtgtt tgcggcagaa caaacgtcga cagtgccgta
    10261 acaccgtaca aaatgatttt gacgttcaca aactgcaaag caaagctggc ccaaaagctg
    10321 attggttttg cctgaagtcc gtcttccttt gttgggctgg tggcgatttt ccacgccagc
    10381 cagacaatat atgccgcccc cgcccaactc aaaaggtgta ccgctgccgg gtcaatcact
    10441 gccagtgaaa atgaaatgcc cgcacacagt aacatcacaa tcaaaaatcc cagactcatc
    10501 cctgccagca cgcgggtact ttgacgaaat ccatgcgacg tagcagagct aagggcgaga
    10561 atattgttcg gtcttggcgt catagcggta atcagggtgt aagtccaaaa agcacttaaa
    10621 agggtcggtg tcacttgtta tctcctctgt tttggtagac agt
//
LOCUS       DADMJB010000146        10444 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.148, whole genome shotgun sequence.
ACCESSION   DADMJB010000146 DADMJB010000000
VERSION     DADMJB010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10444
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.148"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(9..1906)
                     /locus_tag="JN078_003283"
                     /pseudo
     CDS             complement(9..1906)
                     /locus_tag="JN078_003283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310454.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShET2/EspL2 family type III secretion system
                     effector toxin"
     gene            2428..4356
                     /gene="thrS"
                     /locus_tag="JN078_003284"
     CDS             2428..4356
                     /gene="thrS"
                     /locus_tag="JN078_003284"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010245687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HAY9042377.1"
                     /translation="MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGEL
                     VDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGF
                     YYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHAARETFANRGESYKVSIL
                     DENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRI
                     YGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRE
                     LEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNC
                     PGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ
                     IRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNI
                     PFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPV
                     MIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAG
                     IRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEV
                     IEKLQQEIRSRSLKQLEE"
     gene            4360..4902
                     /gene="infC"
                     /locus_tag="JN078_003285"
     CDS             4360..4902
                     /gene="infC"
                     /locus_tag="JN078_003285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HAY9042378.1"
                     /translation="MKGGKRVQTARPNRINGEIRAQEVRLTGLEGEQLGIVSLREALE
                     KAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSSKEQKKKQRVIQVKEIKFRPGT
                     DEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVES
                     FPTKIEGRQMIMVLAPKKKQ"
     gene            4999..5196
                     /gene="rpmI"
                     /locus_tag="JN078_003286"
     CDS             4999..5196
                     /gene="rpmI"
                     /locus_tag="JN078_003286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HAY9042379.1"
                     /translation="MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHL
                     RPKAMVSKGDLGLVIACLPYA"
     gene            5249..5605
                     /gene="rplT"
                     /locus_tag="JN078_003287"
     CDS             5249..5605
                     /gene="rplT"
                     /locus_tag="JN078_003287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016169860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HAY9042380.1"
                     /translation="MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQ
                     YAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFD
                     KVAFTALVEKAKAALA"
     gene            5728..5772
                     /locus_tag="JN078_003288"
     CDS             5728..5772
                     /locus_tag="JN078_003288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanyl--tRNA ligase operon leader peptide"
                     /protein_id="HAY9042381.1"
                     /translation="MNAAIFRFFFYFST"
     gene            6055..7038
                     /gene="pheS"
                     /locus_tag="JN078_003289"
     CDS             6055..7038
                     /gene="pheS"
                     /locus_tag="JN078_003289"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004851795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HAY9042382.1"
                     /translation="MSHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTT
                     LRELPPEERPAAGAVINEAKEQVQQALNARKAELESAALNARLAAETIDVSLPGRRIE
                     NGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF
                     DTTRLLRTQTSGVQIRTMKAQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNI
                     SFTNLKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVH
                     PNVLRNVGIDPEVYSGFAFGMGMERLTMLRYGVTDLRSFFENDLRFLKQFK"
     gene            7053..9440
                     /gene="pheT"
                     /locus_tag="JN078_003290"
     CDS             7053..9440
                     /gene="pheT"
                     /locus_tag="JN078_003290"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012905611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HAY9042383.1"
                     /translation="MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFHG
                     VVVGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCGAPNCRQGLRVAVATIGAVLPGD
                     FKIKAAKLRGEPSEGMLCSFSELGISDDHSGIIELPADAPIGTDIREYLKLDDNTIEI
                     SVTPNRADCLGIIGVARDVAVLNQLPLVEPEIVPVGATIDDTLPITVEAPEACPRYLG
                     RVVKGINVKAPTPLWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGI
                     VVRMAKEGETLVLLDGTEAKLNADTLVIADHNKALAMGGIFGGEHSGVNDETQNVLLE
                     CAFFSPLSITGRARRHGLHTDASHRYERGVDPALQHKAMERATRLLIDICGGEAGPVI
                     DITNEATLPKRATITLRRSKLDCLIGHHIADEQVTDILRRLGCEVTEGKDEWQAVAPS
                     WRFDMEIEEDLVEEVARVYGYNNIPDEPVQASLIMGTHREADLSLKRVKTLLNDKGYQ
                     EVITYSFVDPKVQQMIHPGVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNR
                     VRIFESGLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESV
                     LDLTGKLNEVEFRAEANPALHPGQSAAIYLKGERIGFVGVVHPELERKLDLNGRTLVF
                     ELEWNKLADRVVPQAREISRFPANRRDIAVVVAENVPAADILSECKKVGVNQVVGVNL
                     FDVYRGKGVAEGYKSLAISLILQDTSRTLEEEEIAATVAKCVEALKERFQASLRD"
     gene            9445..9744
                     /gene="ihfA"
                     /locus_tag="JN078_003291"
     CDS             9445..9744
                     /gene="ihfA"
                     /locus_tag="JN078_003291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HAY9042384.1"
                     /translation="MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQV
                     KLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE"
     gene            complement(10048..10188)
                     /locus_tag="JN078_003292"
     CDS             complement(10048..10188)
                     /locus_tag="JN078_003292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000078918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hok/Gef family protein"
                     /protein_id="HAY9042385.1"
                     /translation="MSQKSLTAITFCVTAILIIWMLHGSLCEIRMSFWGAEFAAFLQC
                     KQ"
BASE COUNT         2744 a         2363 c         2664 g         2673 t
ORIGIN      
        1 atagttggtt ataaatacgt ctttagttca tcagcactaa aactcaggct ttggctgatt
       61 acatttatag cagcataata tgtttctaca gttttataat gattatgatg aatggctata
      121 tgaacagctg acatgttgtc atgattttta gcggccaaca gtgtgaataa ctgacgttga
      181 ctaaaagaat atttttttgc aaaaatattc agcgtcgata tataagataa cacgacgtct
      241 tcattaccct tgctcatggc gatgtataat acaggggttc catgtgctgt agcgcctttt
      301 aataaatcca tgatgttagc tttgctcaac ttgtatttaa aggcgatgcc attaatttta
      361 gagaggaacc gtgtgacaca caaagggtga ttattttcca ttgcagcaaa caaccctagt
      421 tcaccatcac gtgttttcat tgctaaaata tccatcacta tttttttgtt taaaagctct
      481 tgtgctattg gagtggttaa tgcattcaga aagatatcga ttgtttcatc gaacccatac
      541 aacatggaga tatagagccc aggtgtttcg ttagcacttt tagtttgcag taatttaacc
      601 agattatctt catgaatgat atgattgtat atcagtgact gaatttcttg cataaatatt
      661 tttacgttgt cagtatgtcc gttcatcata gccagaaata aagcaggtgt accaacgcta
      721 ttctgcgcag ttattatttc aatgatttct ttttcaggga gtatgggcaa ctgtttgaat
      781 aatgtaataa gctgttgagt ctggcctgtg gccattatta acaacattgc cgatggatgt
      841 ataggggcaa atggcattcg tgatgcaata cccgcgaaaa tagcccctgg aactcccaca
      901 ggtaataggg gcagaatagc aattgcacag ttgcgaacat acctatcagc ccaggtctga
      961 gcatcgggac ctgaactgat gaacttatca agcgaaagaa agccccgtgc tgtcctgtgg
     1021 gtgcctctga cggcaacgtt ggtatcgttc gggtcgtaga cggacactac atagtttaat
     1081 tgtccataca ctaactgctt tattcgtagc cttactgaca aagtatgatt gtctatatat
     1141 aaaatcgcgg acatatgact gacattgttt gccatcattc gacaaaagaa aatatctaaa
     1201 gcgaagccaa aatccttact cgcgataacg cgactccctg caggaggatg gcgaagtaat
     1261 gctctgaact ccgcatcccg gactaagggg acatgctgct gtatggattc aacggaggag
     1321 taatgtttaa tcaggttgac tttgcctttt ccatttctca atgaatcaag ggcgtattgc
     1381 aatgacagat ggcgacaaaa aatagcgtca gaaggagatt gcaaaaaaca tgcactacca
     1441 ttgagattta ctgttggttg tatagttttt tctctatgga tttttttaga cagtttcata
     1501 caatggttac gatcttcggc agttaactgt tcctgctcaa tataatccag tatgcttcgc
     1561 aaatggttag ccttaatagg cgtggtttcc agaaataagg gaatgatttc ttttttatag
     1621 tgtaatgtaa taagtatatt ttctgcatgg atgggtgaag tggcaaagtt aatgataaaa
     1681 agggcagtgg agtaacaatt tgtgatattt ttcgacagtt tgcggtaaat tcctgagtaa
     1741 tacagtatga cagcatcgaa cttaagtcag aggtatcaag tagggtgatg agttggcgcg
     1801 caaattgatt aataagctct gatgaaggcg ttggtatgtc gctatcgatg tgcaatctat
     1861 gaggagactt ataatgagtt ctgataatga tatcgttttg actcataatc tattcacctt
     1921 atatatactg gaggttttga ggatgatgat taattattat cgccagaacg aaatgtgcac
     1981 gaaaaattgc tataagaatt gtgtcacttt tatcattgtg atatgaccac ttcgtcatta
     2041 atctcatgat cgtttaaata ctaccgccaa atcacgcaac gaactttgct ggattcagtt
     2101 tatgttgctg taaatccgct cgcagtaaac ctttcagacg caccgtgatg ttatcagtgg
     2161 ttctttaagc gttttgctgg tgtactcact acaaacgaat tgcgaatcga atcaatgtga
     2221 aacggaaagg tacaatctcc ctttttttag tgttaacatc gttcaaccgg gtggaaggtg
     2281 agaggttaat gtctttcatt tgtgtacctg attgcgaacc aatttagcat ttgttggcta
     2341 gatggtttcg caatgaactg ttaataaaca aatttttctt tgtatgtgat ctttcgtgtg
     2401 ggtcaccact gcaaataagg atataaaatg cctgttataa ctcttcctga tggcagccaa
     2461 cgccattacg accacgctgt aagccccatg gatgttgcgc tggacattgg tccaggtctg
     2521 gcgaaagcct gtatcgcagg gcgcgttaat ggcgaactgg ttgatgcttg cgatctgatt
     2581 gaaaacgacg cacaactgtc gatcattacc gccaaagacg aagaaggtct ggagatcatt
     2641 cgtcactcct gtgcgcacct gttagggcat gcgattaaac aactttggcc gcataccaaa
     2701 atggcaatcg gcccggttat tgacaacggt ttttattacg acgttgatct tgaccgcacg
     2761 ttaacccagg aagatgtcga agcactcgag aagcggatgc atgagcttgc tgagaaaaac
     2821 tacgacgtca ttaagaagaa agtcagctgg cacgcagcgc gtgaaacttt cgccaaccgt
     2881 ggggagagct acaaagtctc cattcttgac gaaaacatcg cccatgatga caagccaggt
     2941 ctgtacttcc atgaagaata tgtcgatatg tgccgcggtc cgcacgtacc gaacatgcgt
     3001 ttctgccatc atttcaaact aatgaaaacg gcaggggctt actggcgtgg cgacagcaac
     3061 aacaaaatgt tgcaacgtat ttacggtacg gcgtgggcag acaaaaaagc acttaacgct
     3121 tacctgcagc gcctggaaga agccgcgaaa cgcgaccacc gtaaaatcgg taaacagctc
     3181 gacctgtacc atatgcagga agaagcgccg ggtatggtat tctggcacaa cgacggctgg
     3241 accatcttcc gtgaactgga agtgtttgtt cgttctaaac tgaaagagta ccagtatcag
     3301 gaagttaaag gtccgttcat gatggaccgt gtcctgtggg aaaaaaccgg tcactgggac
     3361 aactacaaag atgcaatgtt caccacatct tctgagaacc gtgaatactg cattaagccg
     3421 atgaactgcc cgggtcacgt acaaattttc aaccaggggc tgaagtctta tcgcgatctg
     3481 ccgctgcgta tggccgagtt tggtagctgc caccgtaacg agccgtcagg ttcgctgcat
     3541 ggcctgatgc gcgtgcgtgg atttacccaa gatgacgcgc atatcttctg tactgaagaa
     3601 caaattcgcg atgaagttaa cggatgtatc cgtttagtct atgatatgta cagcactttt
     3661 ggcttcgaga agatcgtcgt caaactctcc actcgtcctg aaaaacgtat tggcagcgac
     3721 gaaatgtggg atcgtgctga ggcggacctg gcggttgcgc tggaagaaaa caacatcccg
     3781 tttgaatatc aactgggtga aggcgctttc tacggtccga aaattgaatt taccctgtat
     3841 gactgcctcg atcgtgcatg gcagtgcggt acagtacagc tggacttctc cttgccgtct
     3901 cgtctgagcg cctcctatgt gggcgaagac aacgagcgta aggtaccggt aatgattcac
     3961 cgcgcaattc tggggtcgat ggaacgtttc atcggtatcc tgaccgaaga attcgctggt
     4021 ttcttcccga cctggcttgc gccagttcag gttgttatca tgaatattac cgattcacag
     4081 tctgaatacg ttaacgaatt gacgcaaaaa ctatcaaatg cgggcattcg tgttaaagca
     4141 gacttgagaa atgagaagat tggctttaaa atccgcgagc acactttgcg tcgcgtccca
     4201 tatatgctgg tctgtggtga taaagaggtg gaatcaggca aagttgccgt tcgcacccgc
     4261 cgtggtaaag acctgggaag catggacgta aatgaagtga tcgagaagtt gcaacaagag
     4321 attcgcagcc gcagtcttaa acaattggag gaataaggta ttaaaggcgg aaaacgagtt
     4381 caaacggcgc gccctaaccg tatcaatggc gaaattcgcg cccaggaagt tcgcttaaca
     4441 ggtctggaag gcgagcagct tggtattgtg agtctgagag aagctctgga gaaagcagaa
     4501 gaagccggag tagacttagt cgagatcagc cctaacgccg agccgccggt ttgtcgtata
     4561 atggattacg gcaaattcct ctatgaaaag agcaagtctt ctaaggaaca gaagaaaaag
     4621 caaagagtta tccaggttaa ggaaattaaa ttccgtcctg gtacagatga aggcgactat
     4681 caggtaaaac tccgcagcct gattcgcttt ctcgaagagg gtgataaagc caaaatcacg
     4741 ctgcgtttcc gcggtcgtga gatggcgcac cagcaaatcg gtatggaagt gcttaatcgc
     4801 gtgaaagacg atttgcaaga actggcagtg gtcgaatcct tcccaacgaa gatcgaaggc
     4861 cgccagatga tcatggtgct cgctcctaag aagaaacagt aaggccttca agtagcactg
     4921 tctgtggagc cttcgggctt cacaggcttt gttcgccttt gtttcgttta ttaacaatgc
     4981 gaagtggaag ttattaaaat gccaaaaatt aagaccgtac gcggtgctgc taagcgcttc
     5041 aaaaaaaccg gtaaaggtgg ttttaagcac aagcacgcta acctgcgtca cattctgacc
     5101 aaaaaagcga ccaaacgtaa acgtcacctg cgtccgaaag ccatggtttc caaaggcgat
     5161 ctgggcctgg taatcgcgtg cctgccgtac gcataagccg ttaacgtttt taacttttta
     5221 attagaatat agatacagga gagcacatat ggctcgcgta aaacgtggtg ttattgcacg
     5281 cgcacgtcac aagaaaattt tgaaacaagc taaaggctac tacggtgcgc gttctcgcgt
     5341 ataccgcgtt gccttccagg ctgttatcaa agctggtcag tatgcttacc gtgaccgtcg
     5401 tcaacgtaag cgtcagttcc gtcaactgtg gattgcacgt atcaacgcag cagcacgtca
     5461 gaacggtatt tcttacagca aattcatcaa tggcctgaaa aaagcctctg ttgaaatcga
     5521 ccgtaagatc ctggctgata tcgcagtatt cgacaaagta gcgttcaccg ctctggttga
     5581 aaaagcgaaa gcagctctgg cataagccag ttgaaagagg gagctagtct ccctcttttc
     5641 gtttcaacgc catcaaaaca ttgactttta tcgccgtagc cttttcaata aaggtctttt
     5701 gaagagtacc aaaaggtaac gcaagcaatg aatgctgcta ttttccgctt ctttttttac
     5761 tttagcacct gaatccagga ggctagcgcg tgagaagaga aacggaaaac agcgcctgaa
     5821 agcctcccag tggaggcttt ttttgtatgc gcgttttgaa aaataaaaag ccagtctatc
     5881 aggcgtaatt gtcgcagcca gtctggatac ggccagcgcg gagaaaccgg agcgtattta
     5941 agtacgtgag aatttcgagc actgcccggg accaaaatgg caagtaaaat agcctgatgg
     6001 gataggctct aagtccaacg aaccagtgtc accactgaca caatgaggaa aaccatgtca
     6061 catctcgcag aactggttgc cagtgcgaag gcggccatta gccaggcgtc agatgttgcc
     6121 gcgttagata atgtgcgcgt cgaatatttg ggtaaaaaag ggcacttaac ccttcagatg
     6181 acgaccctgc gtgagctgcc gccagaagag cgtccggcag ctggtgcggt tatcaacgaa
     6241 gcgaaagagc aggttcagca ggcgctgaat gcgcgtaaag cggaactgga aagcgcagcg
     6301 ctgaatgcgc gtctggcggc ggaaacgatt gatgtctccc tgccaggtcg tcgcattgaa
     6361 aacggcggtc tgcatccggt tacccgtacc atcgaccgta tcgaaagttt cttcggtgag
     6421 cttggcttta ccgtggcaac cgggccggaa atcgaagacg attatcataa cttcgatgct
     6481 ctgaacattc ctggtcacca cccggcgcgc gctgaccacg acactttctg gtttgacact
     6541 acccgcctgc tgcgtaccca gacctctggc gtacagatcc gcaccatgaa agcccagcag
     6601 ccaccgattc gtatcatcgc gcctggccgc gtttatcgta acgactacga ccagactcac
     6661 acgccgatgt tccatcagat ggaaggtctg attgttgata ccaacatcag ctttaccaac
     6721 ctgaaaggca ctctgcacga tttcctgcgt aacttctttg aggaagattt gcagattcgc
     6781 ttccgtcctt cctacttccc gttcaccgag ccttctgcag aagttgacgt catgggtaaa
     6841 aacggtaaat ggctggaagt gctgggttgc gggatggtgc atccgaacgt gctgcgtaac
     6901 gttggcatcg acccggaagt ttactctggt ttcgccttcg ggatggggat ggagcgtctg
     6961 actatgttgc gttacggcgt caccgacctg cgttcattct tcgaaaacga tctgcgtttc
     7021 ctcaaacagt ttaaataagg caggaataga ttatgaaatt cagtgaactg tggttacgcg
     7081 aatgggtgaa cccggcgatt gatagcgatg cgctggcgaa tcaaatcact atggcgggcc
     7141 tggaagttga cggtgtagaa ccggttgccg gtagcttcca cggcgtggtc gttggtgaag
     7201 tggttgagtg tgcgcagcat ccgaacgctg acaaactgcg tgtgacaaaa gtgaatgtcg
     7261 gcggcgatcg cctgctggac atcgtctgtg gtgcgccaaa ctgccgtcag ggcctgcgtg
     7321 tggcggtagc taccattggt gctgttctgc cgggtgattt caaaattaaa gcggcgaaac
     7381 tgcgtggcga accgtctgaa gggatgctgt gctccttctc tgaactggga atttctgacg
     7441 atcacagcgg cattatcgaa ctgcctgcag atgcgccgat tggcactgac atccgcgaat
     7501 acctgaaact cgatgacaac accatcgaaa tcagcgtaac gccaaaccgt gccgactgct
     7561 taggtatcat tggtgttgcg cgtgacgttg ccgtgctgaa tcagctgccg ctggttgaac
     7621 cggaaatcgt tccggttggt gcgaccatcg acgacacgtt gccgattaca gtcgaagcgc
     7681 ctgaagcctg cccgcgctat cttggccgtg tggtaaaagg cattaacgtt aaagcgccaa
     7741 ctccgctgtg gatgaaagaa aaactgcgtc gttgcgggat ccgttctatc gatgcagttg
     7801 ttgacgtcac caactatgta ctgctcgaac tgggccagcc gatgcacgct ttcgataaag
     7861 atcgcattga aggcggcatt gtggtgcgga tggcaaaaga gggcgaaacg ctggtgctgc
     7921 ttgatggcac tgaagcgaag ctgaatgctg acactctggt catcgccgac cacaacaagg
     7981 cgctggcgat gggcggcatc tttggtggcg aacactctgg cgtgaatgac gaaacgcaaa
     8041 acgtcttgct ggaatgcgct ttcttcagcc cgctgtctat caccggtcgt gctcgtcgtc
     8101 atggcctgca tactgatgcg tctcaccgtt atgagcgtgg cgttgatccg gcactgcagc
     8161 acaaagcgat ggaacgtgcg acccgtctgc tgatcgacat ctgcggtggt gaggctggtc
     8221 cggtaattga tatcaccaac gaagcaacgc tgccgaagcg tgcaaccatc actttacgtc
     8281 gtagcaaact ggattgcctg atcggccatc atattgctga tgaacaggta actgacattc
     8341 tgcgtcgtct cggctgcgaa gtgaccgaag gcaaagacga gtggcaggca gttgcgccga
     8401 gctggcgttt cgatatggag attgaagaag atctggtcga agaagtcgcg cgtgtttacg
     8461 gctacaacaa catcccggat gagccggtac aggcaagcct gattatgggt actcaccgtg
     8521 aagctgacct gtcgctcaag cgcgtgaaaa cgctgctcaa cgacaaaggc tatcaggaag
     8581 tgatcaccta cagcttcgtt gatccgaaag tgcagcagat gatccatcca ggcgttgaag
     8641 ccttactgct gccaagcccg atctctgttg aaatgtcagc aatgcgtctt tctctgtgga
     8701 ccggcctgct ggcaaccgtg gtgtacaacc agaaccgtca gcagaaccgt gtgcgcattt
     8761 tcgaaagcgg tctgcgtttc gtaccagata ctcaggcacc gttgggcatt cgtcaggatc
     8821 tgatgttagc cggtgtgatt tgcggtaacc gttacgaaga gcactggaac ctggcaaaag
     8881 agaccgttga tttctatgat ttgaaaggcg atcttgaatc cgttctcgac ctgaccggta
     8941 aactgaatga ggttgagttc cgtgcagaag cgaatccggc actgcatccg gggcaatccg
     9001 cagcgattta tctgaaaggg gaacgtattg gttttgttgg agttgttcat cctgaactgg
     9061 aacgtaaact ggatcttaac ggtcgcactc tggtgttcga actggagtgg aacaagctcg
     9121 cagaccgcgt ggtgcctcag gcgcgcgaga tttctcgctt cccggcgaac cgtcgtgaca
     9181 tcgcggtggt ggtcgcagaa aacgttcccg cagcggatat tttatccgaa tgtaagaaag
     9241 ttggcgtaaa tcaggtagtt ggcgtaaact tatttgacgt gtaccgcggt aagggtgttg
     9301 cggaggggta taagagcctc gccataagcc tgatcctgca agataccagc cgtacactcg
     9361 aagaagagga gattgccgct accgtcgcca aatgtgtaga ggcattaaaa gagcgattcc
     9421 aggcatcatt gagggattga acctatggcg cttacaaaag ctgaaatgtc agaatatctg
     9481 tttgataagc ttgggcttag caagcgggat gccaaagaac tggttgaact gtttttcgaa
     9541 gagatccgtc gcgctctgga aaacggcgaa caggtgaaac tctctggttt tggtaacttc
     9601 gatctgcgtg ataagaatca acgcccggga cgtaacccga aaacgggcga ggatattccc
     9661 attacagcac ggcgcgtggt gaccttcaga cccgggcaga agttaaaaag ccgggtcgaa
     9721 aacgcttcgc ccaaagacga gtaatctgat ctaactaaaa aggccgctct gcggcctttt
     9781 ttctttcaat aactaattga tttataatgt tttatatctc ttcgttccac gatgcgtcca
     9841 catttagtgg ggggagggga gtaagcccgc tacattgtgg gctttgtctt atagtctgat
     9901 cactgtttca agtcggtgag gacaccaaaa agaacccccg cagtttttac gctgcgggtt
     9961 tgttgttcat gtctgtgaga tagggtgcct tatcgacctt accctggcaa ccgattgacg
    10021 ggggattgct cccccgtcgc ggtttcctta ctgcttacac tgtaagaacg ccgcaaactc
    10081 cgctccccag aagctcatcc gtatttcgca cagcgaaccg tgcagcatcc agatgatgag
    10141 gattgccgtc acgcagaacg tgatggccgt aagcgatttt tgcgacatag cgcttgctcc
    10201 tttttcgggg aggcgctaac ctatcacttg cttagggtag acggttaggg cctcggttaa
    10261 acaaaaatgt tttccggggc ctttccacat ctggccttca ggtattccct ccgaccatca
    10321 gccgaaaggc acccgcgcgt aatctatcgc ttttttgtta ctccggcaat tctgctcgtt
    10381 aattctgagg taagggcaaa ctcatctgat tgtttcctct gtgtgaagtt ggcagttcat
    10441 gcca
//
LOCUS       DADMJB010000147        10370 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.149, whole genome shotgun sequence.
ACCESSION   DADMJB010000147 DADMJB010000000
VERSION     DADMJB010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10370
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.149"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(37..1032)
                     /gene="gapA"
                     /locus_tag="JN078_003293"
     CDS             complement(37..1032)
                     /gene="gapA"
                     /locus_tag="JN078_003293"
                     /EC_number="1.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HAY9042386.1"
                     /translation="MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYM
                     LKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLT
                     DETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAK
                     VINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKV
                     LPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTE
                     DDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK"
     gene            1374..1787
                     /gene="msrB"
                     /locus_tag="JN078_003294"
     CDS             1374..1787
                     /gene="msrB"
                     /locus_tag="JN078_003294"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HAY9042387.1"
                     /translation="MANKPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVY
                     HCLICDAPLFHSETKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHL
                     GHVFPDGPQPTGERYCVNSASLRFTDGENGEEING"
     gene            1829..2101
                     /locus_tag="JN078_003295"
     CDS             1829..2101
                     /locus_tag="JN078_003295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707337.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeaC family protein"
                     /protein_id="HAY9042388.1"
                     /translation="MNLDDIINSMTPEVYQRLSTAVELGKWPDGVALTEEQKENCLQL
                     VMLWQARHNTEAQHMTIDTNGQMVMKSKQQLKEDFGISAKPIAMFK"
     gene            complement(2262..2903)
                     /gene="pncA"
                     /locus_tag="JN078_003296"
     CDS             complement(2262..2903)
                     /gene="pncA"
                     /locus_tag="JN078_003296"
                     /EC_number="3.5.1.-"
                     /EC_number="3.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310502.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nicotinamidase/pyrazinamidase"
                     /protein_id="HAY9042389.1"
                     /translation="MPHRALLLVDLQNDFCAGGALAVPEGDSTVEVANRLIDWCQSRG
                     EAVIASQDWHPANHGSFASQHGVEPYTPGQLDGLPQTFWPDHCVQNSEGAQLHPLLNQ
                     KAIAAVFHKGENPLVDSYSAFFDNGRRQKTSLDDWLRDHEIDELIVMGLATDYCVKFT
                     VLDALQLGYKVNVITDGCRGVNIQPQDSAHAFMEMSAAGATLYTLADWEETQG"
     gene            complement(2914..3930)
                     /gene="ansA"
                     /locus_tag="JN078_003297"
     CDS             complement(2914..3930)
                     /gene="ansA"
                     /locus_tag="JN078_003297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HAY9042390.1"
                     /translation="MQKKSIYVAYTGGTIGMQRSEQGYIPVSGHLQRQLALMPEFHRP
                     EMPDFTIHEYTPLMDSSDMTPDDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALS
                     FMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINEVTLFFNNRLYRGNR
                     TTKAHADGFDAFASPNLPPLLEAGIHIRRLNTPPAPHGEGELIVHPITPQPIGVVTIY
                     PGISADVVRNFLRQPVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNLTQCMSG
                     KVNMGGYATGNALAHAGVIGGADMTVEATLTKLHYLLSQELDTETIRKAMSQNLRGEL
                     TPDD"
     gene            complement(4097..5953)
                     /gene="sppA"
                     /locus_tag="JN078_003298"
     CDS             complement(4097..5953)
                     /gene="sppA"
                     /locus_tag="JN078_003298"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707347.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HAY9042391.1"
                     /translation="MRTLWRFIAGFFKWTWRLLNFVREMVLNLFFIFLVLVGVGIWMQ
                     VSGGDSKETASRGALLLDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVN
                     TIRQAKDDHNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQY
                     YLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRD
                     DMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPSAQGLLEGLTKTGGDTAKYA
                     LENKLVDALASSAEIEKALTKEFGWSKTDKNYRAISYYDYALKTPADTGDSIGVVFAN
                     GAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAA
                     RAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGV
                     HTDGVSTSPLADVSITRALPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQ
                     GHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKVKQWHLEYYVDEPTFFDKVMDNMSG
                     SVRAMLPDAFQAMLPAPLASVASTVKSESDKLAAFNDPQNRYAFCLTCANVR"
     gene            6114..6665
                     /locus_tag="JN078_003299"
     CDS             6114..6665
                     /locus_tag="JN078_003299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H nitroreductase"
                     /protein_id="HAY9042392.1"
                     /translation="MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQP
                     WHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKV
                     PRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYL
                     GTPQLKASTSINVPDPTPFVTYF"
     gene            6782..7825
                     /gene="selD"
                     /locus_tag="JN078_003300"
     CDS             6782..7825
                     /gene="selD"
                     /locus_tag="JN078_003300"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HAY9042393.1"
                     /translation="MSENSIRLTQYSHGAGCGCKISPKVLETILHSEQAKFVDPNLLV
                     GNETRDDAAVYDLGNGTSVISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMA
                     IAILGWPINKLSPEIAREVTEGGRYACRQAGIALAGGHSIDAPEPIFGLAVTGIVPTE
                     RVKKNSTAQAGCKLFLTKPLGIGVLTTAEKKSLLKPEHQGLATEVMCRMNIAGASFAN
                     IEGVKAMTDVTGFGLLGHLSEMCQGAGVQARVDYDAIPKLPGVEEYIKLGAVPGGTER
                     NFASYGHLMGEMPREVRDLLCDPQTSGGLLLAVMPEAENEVKATAAEFGIELTAIGEL
                     VPARGGRAMVEIR"
     gene            7830..9791
                     /locus_tag="JN078_003301"
     CDS             7830..9791
                     /locus_tag="JN078_003301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HAY9042394.1"
                     /translation="MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGH
                     LLEQAQPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEIVHAG
                     DPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCV
                     SALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVA
                     KDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIV
                     TSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCR
                     YLPEEHFAGRHAVMNAISVHAPDLLPQPVVDPDIRNRCWDDKKVDAHHAIIPTARSSA
                     INLTENEAKVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLL
                     GSKERDEENDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQ
                     DKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHSLPEMAT
                     RPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVRQFRGIVAPGSGG
                     SADKKKAAPRKRSAKKSPPADEVGSGAIA"
     gene            9918..>10370
                     /locus_tag="JN078_003302"
     CDS             9918..>10370
                     /locus_tag="JN078_003302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416276.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042395.1"
                     /translation="MKKVLLQNHPGSEKYSFNGWEIFNSNFERMIKENKAMLLCKWGF
                     YLTCVVAVMFVFAAITSNGLNERGLITAGCSFLYLLIMMGLIVRAGFKAKKEQLHYYQ
                     AKGIEPLSIEKLQALQLITPYRFYHKQWSETLEFWPRKPEPGKDTFQYH"
BASE COUNT         2611 a         2533 c         2736 g         2490 t
ORIGIN      
        1 gaagtcgctc tttttagatc acagtttcat ctcaacttat ttggagatgt gagcgatcag
       61 gtccagaact ttgttggagt aaccggtttc gttgtcgtac caggatacca gtttcacgaa
      121 gttgtcgttc agagcgatac cagctttagc atcgaacacg gaagtgcaaa cttcgccgtt
      181 gaaatcggta gatactacgt catcttcggt gtagcccaga acgcctttca tttcgccttc
      241 agcagcggct ttaacggcag ctttgatctg ctcgtaagtt gcagcttttt ccagacgaac
      301 ggtcaggtca actacggata cgttcggggt cggaacgcgg aacgccatac cagtcagttt
      361 gccattcagt tctggcagta ctttacctac agctttagca gcaccggtag aggacgggat
      421 gatgttctgg gaagcgccgc ggccgccgcg ccagtctttg tgagacgggc catcaacggt
      481 tttctgagta gcggtagtag cgtgaacggt ggtcatcaga ccttcgatga tgccgaagtt
      541 atcgttgata actttagcca gcggagccag gcagttggtg gtgcaggaag cgttggaaac
      601 gatgtcctgg ccagcatatt tgtcgaagtt agcgccttta acgaacatcg gagtgttgtc
      661 tttagacgga ccagtcataa ccactttctt cgcaccagcg gtgatgtgtt tacgagcagt
      721 ttcgtcagtc aggaacagac cagttgcttc agcgacaacg tcaacaccaa cttcgtccca
      781 tttcaggtta gccggatcac gttcagcggt aacacggatt tttttaccgt taacgatcag
      841 atgaccgtct ttcacttcaa cggtaccgtc gaaacggccg tgagtggagt catatttcag
      901 catgtatgcc atgtaatcag cgtctaacag gtcgttgatt gcaacgatct cgatgtcaga
      961 acgtttctga gcagcacgga aaacaatgcg accgatacgg ccaaaaccgt tgatacctac
     1021 tttgatagtc atatattcca ccagctattt gttagtgaat aaaaggttgc ctgtaaaatt
     1081 acaaaaacct tacgcagcgt caagcggaat cgtgtcaatc attgcgacaa atcaatcctg
     1141 tgcctaagca ttatgcgact gactcgcctc actcttcctt tgggcttgaa accacatggg
     1201 gtcggcgccc cgaattttaa agggcaatta cgataaaaat gtgattttca tcacgattta
     1261 ggtgcagcca tttcgtcgag atcaagttta ggacaaaatt ttgccagttg gtgttaatgt
     1321 tttgttagaa tcagtcacgt aatgtgagca cgattaaagt gagatgtgag caaatggcta
     1381 ataaaccttc ggcagaagaa ctgaaaaaaa atttgtccga gatgcagttt tacgtgacgc
     1441 agaatcatgg gacagagccg ccatttacgg ggcgtttact gcataacaag cgtgacggcg
     1501 tatatcactg tttgatctgc gatgccccgc tgtttcattc cgaaaccaag tatgattccg
     1561 gctgtggctg gcccagtttc tacgaaccgg tgagtgaaga atccattcgt tatatcaaag
     1621 acttgtcaca tggaatgcag cgcatagaaa ttcgttgcgg taactgtgat gcccatctgg
     1681 ggcatgtctt tcccgacggg ccgcaaccaa caggcgaacg ttattgtgtt aactctgctt
     1741 ctttacgctt cactgatggc gaaaacggcg aagaaatcaa cggttgaaaa aacgattcag
     1801 caacttattc cacaggagcg gaaaaattat gaatcttgat gacattatca acagcatgac
     1861 gcctgaggta taccagcgtt tgtcgaccgc cgttgaactg gggaaatggc ctgatggcgt
     1921 tgcgttgacc gaggaacaaa aagagaattg cctgcaactg gtgatgctgt ggcaagcccg
     1981 ccataatacc gaagcacagc atatgacaat tgacacaaat ggtcagatgg tcatgaagag
     2041 caaacagcag ttaaaagaag attttggtat ctcagcaaag cctattgcta tgtttaagtg
     2101 aatgagttat ctagtattta agcctgttat taagggaggg caaatatact tgttcggacg
     2161 tcgtgtttta gctgcaagta ggttaaatgc aacactgaca agtattatct ggcctacaat
     2221 gtcattgagg aaatgtaggc cagagatgaa ttcaactaat attacccctg tgtctcttcc
     2281 cagtctgcca gcgtatatag cgttgcccca gctgctgaca tctccataaa cgcgtgtgca
     2341 ctgtcctggg gctggatatt cacgccacga caaccatcgg taatcacgtt caccttataa
     2401 cctaactgta acgcgtccag cacggtaaac ttcacgcaat agtcagtagc caggcccata
     2461 acgatcaatt catcgatttc atgatcgcgt aaccagtcat cgagagaggt tttctgccga
     2521 cggccgttat caaaaaaggc actgtaactg tcaactaaag gattttcgcc tttatggaac
     2581 accgctgcga tcgctttttg gttcagtaac ggatgtaatt gtgcgccttc actgttctgc
     2641 acacagtgat ctggccagaa ggtttgtggc aaaccgtcga gttggcctgg cgtataaggc
     2701 tctacaccgt gctgactggc aaaactgccg tgattcgccg gatgccagtc ctggctggcg
     2761 ataaccgctt ctccgcgcga ctggcaccag tcaataaggc ggttagcaac ctccaccgta
     2821 ctgtcacctt ccggtacggc gagcgcgcca ccagcacaga aatcattttg taaatcgacc
     2881 agtaacaggg cgcgatgggg cattgcagtc tccttaatca tccggcgtca gttcgccgcg
     2941 caggttttgg ctcatggcct tgcgaatggt ttcagtatcc agttcctggc tcagcaggta
     3001 atgcagtttg gttagcgtgg cttctacagt catatctgca ccgccaataa cgccggcatg
     3061 ggcgagggcg ttaccggtgg cataaccacc catattcact ttaccggaca tacattgtgt
     3121 caggttgacc accacaatac cgcgatcgct ggcttcttgt aattcctgca ggaaggcttt
     3181 gttttgtggc gcattaccca cgccatagga gcgcagaatc aatgctttca ctggttggcg
     3241 cagaaaattg cgcacgacat cagcagaaat ccccggataa atcgtcacta cgccaattgg
     3301 ttgtggcgtg attggatgaa cgattaattc cccttcaccg tgcggggcgg gtggcgtatt
     3361 caaacgacga atatggatac cagcttccag taacggagga aggtttggag aggcaaacgc
     3421 atcaaaacca tcggcatggg ctttggtagt gcggttgccg cgatacaatc ggttattgaa
     3481 aaagagcgtt acttcgttga tcggataatt cgccgcaacg tacaacgcat tcagcagatt
     3541 aatttgtccg tcagagcgta actcagccag cgggatttgt gaccctgtca caatgaccgg
     3601 tttaccgaga ttctcgagca tgaacgacag cgcagaggcg gtatacgcca tcgtgtcggt
     3661 accgtgtaga atgacaaaac catcatagtc gtcatagtgc gctttaatat cttcagcaat
     3721 atgctgccag tcatccggcg tcatatcaga agaatccatc aacggcgtat attcatgaat
     3781 ggtgaaatct ggcatctccg ggcgatggaa ttccggcatc agcgccagtt ggcgttgtag
     3841 atgacctgac accggaatat aaccctgctc ggaacgctgc atcccgatgg tcccgcccgt
     3901 gtaggcgacg taaattgatt tcttttgcat gatattgata tgaatgatat cgaaagagca
     3961 aaagtatata cgtgaggcag gaggagcgca cctgatacta tgcggataag gaaatatggg
     4021 gcgagacagc gggaagagga ttcgtcgagg taaaaaataa tgtggccgac gatctgtcgg
     4081 ccactcagta caagacttaa cgcacgttgg cgcaggtcag gcaaaacgca taacggtttt
     4141 gtgggtcgtt aaacgcggcc agcttgtcgc tttcactttt aacggtagag gctaccgagg
     4201 caagcggtgc aggtaacatg gcctggaacg catctggcaa cattgcccgg acagaaccag
     4261 acatgttgtc catcactttg tcgaagaagg tcggttcatc aacgtagtat tccagatgcc
     4321 actgtttcac ttttgcgagc tctgctgctt tggcaaccgc atcatcgaaa tccccgagac
     4381 tatcgaccag cccgttagct tttgcatcct gaccggtcca gacgtggccc tgggcgattt
     4441 tatcaatttg ctccggcgtc gaatgacgcg catcagcaac cagcgtgata aagcgtttat
     4501 agccattctc aatgcttaat tgcatcatct gctgcgcttc cggcggcagt gccctggtga
     4561 tagaaacatc cgccagcggt gaagttgaga caccatcagt atgaacacca atcgaatcca
     4621 gactattttc tacggtggtg atcacgccga agataccgat agaaccggtc agggtgctgg
     4681 ggttagccac aatgtaatta gctggcgtgg aaatccagta accaccagat gccgccatgc
     4741 cgcccatcga tacaaccaca ggcttacccg ctgcccgggc tgctgccagt tcagcgcgaa
     4801 tcacttcaga cgcggtaacg ctgccgcctg ggctattaac acgcaggaca atcgctttca
     4861 ctttcgggtc aaggcgagcg tcgcggattt gtgccgcagt ggtatcaccg ccaacattcc
     4921 cctgagtttc ctcgccatcc ataattgcgc cattagcgaa gacgacaccg atgctgtcac
     4981 cggtatctgc cggcgttttc aatgcgtaat cgtaataact gatggcgcga taatttttat
     5041 cagtcttact ccagccgaac tctttggtca gagctttttc gatttcggca ctcgatgcca
     5101 gtgcatcgac cagcttgttt tccagtgcat atttcgcggt atcgccaccg gttttggtta
     5161 aaccctcaag caacccttgc gcgctaggga atacctgctg agcagggatc tgccggttag
     5221 cggcaacagt attcagatag ttttgccaca gctcaccaat ccagcggctg tcagcttcgc
     5281 gggctgccgg tgacatatca tcacgaataa acggttcaac ggcagattta tacgtaccca
     5341 cgcggaacac atgggtggaa actttcagct tatccagcaa cgatttgtag tacagaccgt
     5401 tggtagcaaa accgtgcaga tcaaccacgc cttgcggtga cagccaaatt ttattggcga
     5461 aactggcgag ataatattgc ccctggctgt agttctcgcc aacggcataa accggtttcc
     5521 cgctgtcacg aaactctttc agggctttgc cgatgtactg catagacggc tggtcgccgc
     5581 ctgcgaagtt tttcagatcc atcacgatac cggtgatatt gtggtcgtcc ttcgcctggc
     5641 gaatggtgtt gacgatatca aacagtgagt tttcctgcag acgatcggaa ctggcaccaa
     5701 gcagctggcg gcttaattta ctaaaccgct gagaactgtc gggtttatcg acgatcacac
     5761 cggaaatgtc cagcagcagt gcgccacgac tggccgtttc tttcgaatca ccaccactga
     5821 cctgcatcca gatccccaca ccaaccagta cgaggaaaat aaagaacagg ttaagtacca
     5881 tttcacggac gaaattcagc agacgccacg tccatttaaa aaatccggca ataaatcgcc
     5941 aaagggttcg catgtattct cccaacttaa ggtcacacct gtcacaggcg caatagatgt
     6001 ggttatcgta atgacccaac cgacacttgt cagcaggaat tgcggactgt gctgtaacaa
     6061 aatccactct cgtgttaatt ttgtgaataa atatcacgac aggagttaat caaatggatg
     6121 cactcgaact attgatcaat cgccgtagcg cctcccgcct ggctgaaccc gcgccaacgg
     6181 gtgaacaact gcaaaacatc ctgcgtgcgg gtatgcgtgc gccggaccat aagtccatgc
     6241 aaccgtggca tttttttgtg attgaagggg aagggcgcga gcgtttcagc gccgtactgg
     6301 aacagggggc gattgctgcc ggtagtgatg acaaagctat cgacaaagcc cgtaatgcgc
     6361 cgttccgcgc accgctcatc atcacggtgg tggcgaaatg cgaagaaaat cataaagtcc
     6421 cgcgatggga acaggaaatg tctgccggat gcgcggtcat ggcgatgcaa atggcagccg
     6481 ttgcccaggg atttggcggc atctggcgca gtggcgcatt aactgaaagt ccggtagtgc
     6541 gtgaagcatt cggttgccgt gagcaggata aaattgtcgg ttttctctac ctcggcacgc
     6601 cgcagttgaa agcatctacg tcgattaacg tcccggaccc gacgccgttt gtaacttatt
     6661 tctgataatt gtcgcgaaac tgtctggatt gtgagcaaag gcgcaggaat tcagacactc
     6721 tcacttatca cttcacggaa tgagggttac catacccgga ttgcattgac aggagatgtc
     6781 catgagcgag aactcgattc gtttgaccca atacagccac ggagctggtt gcggctgtaa
     6841 aatttcccca aaagtgttgg aaaccatcct gcacagtgag caggcgaagt ttgttgatcc
     6901 gaatttgctt gtgggtaatg agacccgcga cgatgcggcg gtgtacgatc tgggcaatgg
     6961 caccagcgtt atcagtacca ccgacttctt tatgccgatc gttgataatc ctttcgattt
     7021 tggccgcatt gcggcgacta acgccatcag cgatatcttc gcgatggggg gcaaaccgat
     7081 tatggcgatt gcgatcctcg gctggccgat taacaaactt tccccggaaa ttgcccgcga
     7141 agtaaccgaa ggtggacgct atgcatgccg tcaggcgggt attgcgctgg ctggcggtca
     7201 ctccatcgat gcgccggagc cgatttttgg tctggcggta acggggatcg taccgaccga
     7261 gcgggtgaag aaaaacagca ccgcacaagc cggatgcaaa ctgttcctga cgaaaccgct
     7321 ggggatcggc gttcttacca cggctgagaa aaaatcattg ctgaaaccag aacatcaggg
     7381 actagcgacg gaagtgatgt gccggatgaa catcgcaggc gcgtcctttg ccaacatcga
     7441 aggcgtaaaa gcgatgaccg acgttacggg ctttggtctg ctgggccatt tgagcgaaat
     7501 gtgtcagggc gcaggtgtgc aggcgcgcgt tgactatgac gcgatcccaa aattgccggg
     7561 ggttgaagag tacattaagt tgggcgcagt gcctggcggc accgaacgta actttgccag
     7621 ctacggtcat ctgatgggtg aaatgccgcg tgaagtgcgc gatttgctgt gcgatccgca
     7681 aacttctggc ggtttgctgc tggcggtcat gccggaagca gaaaatgagg tcaaagctac
     7741 agccgccgag tttggcattg aactgacggc aattggcgaa ctggtgccag cgcgcggcgg
     7801 tcgtgccatg gttgagattc gttaattcaa tgcggttgtt tattgccgaa aaaccgagtc
     7861 tggcgcgcgc cattgctgat gtcctgccca aaccgcaccg gaaaggcgat ggctttatcg
     7921 agtgcggtaa tggtcaggtg gtgacctggt gtatcggtca cctgcttgag caggcgcagc
     7981 cagacgccta cgacagccgc tatgcgcgct ggaatcttgc ggatttgccg attgtcccgg
     8041 aaaagtggca attacagccc cgaccctccg tgaccaaaca acttaacgtc atcaaacgct
     8101 tcctgcatga agccagcgaa atcgttcacg ccggggaccc ggatcgtgaa gggcaactgc
     8161 tggtggatga agtgctggac tatctgcaac tggcaccgga aaagcgccag caggtgcagc
     8221 gttgcttgat aaacgacctg aacccgcagg cggttgagcg ggcgatcgac cgtcttcggt
     8281 ccaacagtga gtttgtgcca ttgtgcgttt ctgcgctggc gcgagcgcgt gccgactggc
     8341 tgtacggcat caatatgacc cgtgcgtata ccattctcgg tcgcaatgcc ggttatcagg
     8401 gcgtactttc cgtgggacgc gtgcagacac ccgtgctcgg gctggtggtg cgccgcgatg
     8461 aagagattga aaacttcgtg gcgaaagact tctttgaagt caaagcacat atcgtgacac
     8521 ctgccgatga gcggtttacc gctatctggc aaccgagcga agcgtgtgaa ccgtaccagg
     8581 atgaagaagg gcgcttgtta catcgtccac tggcggagca tgtggttaac cgcattagtg
     8641 gtcaaccagc aattgtcacc agctataacg ataaacggga atcagaatcc gcgccgctgc
     8701 ctttttcgct ttcggcgttg cagattgaag cggcaaaacg ctttggtctg agcgcgcaga
     8761 acgtgcttga tatctgccag aagctgtacg aaacgcacaa gctaatcact tatccgcgtt
     8821 ccgattgtcg ctatttgcca gaagaacatt ttgccggacg ccacgcggtg atgaatgcca
     8881 tcagcgttca tgcaccagat ctgttgccgc aaccagtggt agatccagat atacgcaacc
     8941 gctgttggga tgacaaaaag gtcgatgcac accacgccat catcccgacc gcacggagtt
     9001 ctgcgatcaa cctgacggag aacgaagcga aggtctataa cctgattgcc cgtcagtact
     9061 tgatgcagtt ctgcccggat gcggtgttcc gcaagtgtgt tatcgaactg gacattgcca
     9121 aaggcaaatt tgtcgctaaa gcgcgttttc ttgctgaagc aggctggcgc acgctgttag
     9181 gcagcaaaga gcgcgatgaa gaaaacgacg gtacgccatt gcctgtggtg gcgaaaggcg
     9241 atgagttgct gtgtgaaaaa ggtgaagtgg tagagcggca aacccagccg ccgcgccatt
     9301 ttaccgatgc aacactgctt tcggcgatga ccgggatcgc gcgctttgtg caggacaaag
     9361 atctgaaaaa gatccttcgt gcgaccgatg gtctggggac agaagcaacc cgtgccggga
     9421 ttattgaact gctgttcaag cgtggttttc tgaccaaaaa agggcgctat atccactcta
     9481 ccgacgccgg aaaagcgtta ttccattcgc tgccagaaat ggcgacgcga ccggacatga
     9541 ccgcgcactg ggaatcggtg ctgacgcaaa tcagcgaaaa gcagtgtcgc tatcaggact
     9601 ttatgcagcc gctggtgggg acgctatatc agcttattga tcaagccaaa cgtacgccgg
     9661 tgcggcagtt tcgcggcatt gtggctccgg gcagtggtgg cagtgctgat aagaaaaagg
     9721 ctgcaccgcg taaacgtagt gcgaaaaaaa gtccgccagc agatgaagtc ggaagcgggg
     9781 cgatagcgta agcgagtgaa tctttcgtgc tattcgagtc atattctgaa atatccagcg
     9841 aatcaagaaa attcgttgga tatttttttg catggataaa attatcgcct ctaaagtatg
     9901 taataacagg gaatgtgatg aaaaaagttt tattacaaaa ccatcctggg agcgagaagt
     9961 attcttttaa tggctgggaa atatttaata gtaattttga acggatgatt aaagaaaata
    10021 aggccatgct gctttgtaag tgggggtttt atttaacatg tgttgtcgct gtaatgtttg
    10081 tgttcgcagc gataacatcc aacggtttga atgaaagagg cctgattacc gcgggatgct
    10141 cttttcttta tctattaatt atgatggggc ttattgttcg ggccggtttt aaagcaaaaa
    10201 aagaacaact gcattattat caggctaaag gtattgagcc gctcagtatc gagaagttac
    10261 aggcgctaca attgatcaca ccttatcgat tctatcataa gcaatggtct gaaacgctgg
    10321 agttctggcc gcgaaagcct gaacctggca aagatacctt ccaatatcat
//
LOCUS       DADMJB010000148        10330 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.150, whole genome shotgun sequence.
ACCESSION   DADMJB010000148 DADMJB010000000
VERSION     DADMJB010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10330
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.150"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            121..987
                     /gene="folD"
                     /locus_tag="JN078_003303"
     CDS             121..987
                     /gene="folD"
                     /locus_tag="JN078_003303"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HAY9042396.1"
                     /translation="MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSN
                     PASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDALNADNTIDGILVQLPLP
                     AGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGL
                     NAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPG
                     DWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTL
                     QACVEYHDPQGE"
     gene            989..1201
                     /gene="ybcJ"
                     /locus_tag="JN078_003304"
     CDS             989..1201
                     /gene="ybcJ"
                     /locus_tag="JN078_003304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308617.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein YbcJ"
                     /protein_id="HAY9042397.1"
                     /translation="MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGA
                     VETRKRCKIVAGQTVSFAGHSVQVVA"
     gene            1309..1830
                     /locus_tag="JN078_003305"
     CDS             1309..1830
                     /locus_tag="JN078_003305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HAY9042398.1"
                     /translation="MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLS
                     FKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVLIGRRWFRAGLIRCWLFLTVSLLSHSL
                     LDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLP
                     GMVLMGMLWWRRR"
     gene            complement(1866..3251)
                     /gene="cysS"
                     /locus_tag="JN078_003306"
     CDS             complement(1866..3251)
                     /gene="cysS"
                     /locus_tag="JN078_003306"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HAY9042399.1"
                     /translation="MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTF
                     VAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDA
                     LNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDL
                     DQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLG
                     NHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFT
                     VRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQTRAALERLYTALRGTDKTVAPAG
                     GEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLG
                     LLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLE
                     DGPQGTTWRRK"
     gene            3425..3919
                     /gene="ppiB"
                     /locus_tag="JN078_003307"
     CDS             3425..3919
                     /gene="ppiB"
                     /locus_tag="JN078_003307"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017465360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase B"
                     /protein_id="HAY9042400.1"
                     /translation="MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRV
                     INGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINV
                     VDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESV
                     TVSE"
     gene            3922..4644
                     /gene="lpxH"
                     /locus_tag="JN078_003308"
     CDS             3922..4644
                     /gene="lpxH"
                     /locus_tag="JN078_003308"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HAY9042401.1"
                     /translation="MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFE
                     AWIGDDDPNPLHRQMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKV
                     LELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQMLFLALPLFVRKRIAARMRANS
                     KEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGA
                     WHTEGSMVKVTADDVELIHFPF"
     gene            4762..5271
                     /gene="purE"
                     /locus_tag="JN078_003309"
     CDS             4762..5271
                     /gene="purE"
                     /locus_tag="JN078_003309"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HAY9042402.1"
                     /translation="MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSA
                     HRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVD
                     SLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVL
                     ENPDPRGAA"
     gene            5268..6335
                     /gene="purK"
                     /locus_tag="JN078_003310"
     CDS             5268..6335
                     /gene="purK"
                     /locus_tag="JN078_003310"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706400.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HAY9042403.1"
                     /translation="MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQS
                     VITAEIERWPETVLTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAD
                     RSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINFSG
                     EVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELG
                     YMGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVV
                     NNPSVMINLIGSDANYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEA
                     LIPLLPPEYASGVIWAQSKFS"
     gene            complement(6472..7363)
                     /locus_tag="JN078_003311"
                     /pseudo
     CDS             complement(6472..7363)
                     /locus_tag="JN078_003311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706399.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
     gene            complement(7360..8175)
                     /locus_tag="JN078_003312"
     CDS             complement(7360..8175)
                     /locus_tag="JN078_003312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2877 domain-containing protein"
                     /protein_id="HAY9042404.1"
                     /translation="MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHR
                     QGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPP
                     SHPQPLAAAWMQRAEETGLFGPLAMAASDPLTAELRQFRHCFQAALNGVKTDWRHWLG
                     KGPGLTPSHDDTLSGMLLAAWYYGALDARAGRPFFACSDNLQLVTTAVSVSYLRYAAQ
                     GYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP"
     gene            complement(8186..9445)
                     /locus_tag="JN078_003313"
     CDS             complement(8186..9445)
                     /locus_tag="JN078_003313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009029994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1116 domain-containing protein"
                     /protein_id="HAY9042405.1"
                     /translation="MFTSVAQANAAVIEQIRRARPHWLDVQPAFSLISELNEGKTLLH
                     AGPPMRWQEMTGPMKGACVGGCLFEGWAKDEAQALAMLEQGEVNFIPCHHVNAVGPMG
                     GITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLS
                     AALGRMEHGIDLTAMMAQGITMGDEFHQRNIASSALLMRTLAPQIARLDHDKQHIAEV
                     IDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFT
                     APVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAAR
                     AVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQ
                     IGAGTVRAPLACFEQALEALAESMGIG"
     gene            complement(9455..10279)
                     /gene="fdrA"
                     /locus_tag="JN078_003314"
                     /pseudo
     CDS             complement(9455..10279)
                     /gene="fdrA"
                     /locus_tag="JN078_003314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001314544.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase FdrA"
BASE COUNT         2272 a         2937 c         2773 g         2348 t
ORIGIN      
        1 aaccttcgca agaggtcgct tcacgcgata aatctgaaac gaaacctgac agcgcgcccc
       61 gcttctgaca aaataggcgc atccccttcg acctacgtaa cagatggaat cctctctctg
      121 atggcagcaa agattattga cggtaaaacg attgcgcagc aggtgcgctc tgaagttgct
      181 caaaaagttc aggcgcgtat tgcagccgga ctgcgggcac caggactggc cgttgtgctg
      241 gtgggtagta accctgcatc gcaaatttat gtcgcaagca aacgcaaggc ttgtgaagaa
      301 gtcgggttcg tctcccgctc ttatgacctc ccggaaacca ccagcgaagc ggagctgttg
      361 gagcttatcg atgcgctgaa tgccgacaac accatcgatg gcattctggt tcaactgccg
      421 ttaccggcgg gtattgataa cgtcaaagtg ctggaacgta ttcatccgga caaagacgtg
      481 gacggtttcc atccttataa cgtcggtcgt ctgtgccagc gcgcgccgcg tctgcgtccc
      541 tgcaccccgc gcggtatcgt cacgctgctt gagcgttaca acattgatac cttcggcctt
      601 aacgccgtgg tgattggcgc atcgaatatc gtcggtcgtc caatgagcat ggaactgttg
      661 ctcgcaggtt gcaccactac cgtgactcac cgtttcacta aaaatctgcg tcaccacgta
      721 gaaaatgccg atctgttgat cgttgccgtc ggcaagccgg gctttattcc tggtgactgg
      781 atcaaagaag gcgcaattgt gattgatgtc ggcatcaacc gtctggaaaa tggcaaagtt
      841 gtgggcgacg tcgtgtttga agacgcggct aaacgcgcct catacattac gcctgttccg
      901 ggcggcgttg gcccgatgac ggttgccacg ctgattgaaa acacgcttca ggcgtgcgtt
      961 gaatatcatg atccacaggg tgagtaacat ggcgacattt tctttaggta aacatccgca
     1021 cgttgagctg tgcgatttgc tgaaactgga aggctggagc gaaagcggcg cgcaggcgaa
     1081 aatcgcgatt gccgaaggcc aggtgaaagt cgacggtgcg gttgaaacgc gcaaacgctg
     1141 caaaatcgtc gccggtcaga cagtgagttt tgcaggtcac agcgtacagg ttgttgcctg
     1201 atccctttcc cggcctgtat caacaggccg gttctctttt cagacttttg ccctctacgc
     1261 cccgttcatc catgctgata gcatcgacat tttgccgaag cgaccatcat gccaaccgtt
     1321 attacgcacg ccgccgttcc cctatgcatt ggtttagggt tgggttcgaa agtcatccct
     1381 ccgcgtctgt tatttgccgg aatcatcctg gcgatgctgc ccgacgccga cgtattgtcg
     1441 tttaaatttg gcgttgctta cggcaatgtt tttggtcatc gcgggtttac ccattcgctg
     1501 gtgtttgcgt ttgttgtccc gctgttatgt gtgctgattg gacgccgatg gttcagggct
     1561 gggcttattc gctgctggct gtttttaacc gtctcgttgc tatcgcacag cttgctggat
     1621 tcggtaacca ctggcggtaa gggcgttggc tggctgtggc cgtggtcaga tgaacgcttt
     1681 ttcgctccct ggcaggtgat taaagtcgcg ccgtttgcat tgtctcgtta caccacgccg
     1741 tacgggcatc aggtgataat ttctgaattg atgtgggtgt ggttgccggg gatggtgctt
     1801 atgggaatgt tgtggtggcg caggcgataa ccggatgcga aaactcgcat ccggcaacag
     1861 cgcaattact tacgacgcca ggtggtccct tgcgggccat cttccagcac gatccccatc
     1921 tcgttaagac ggtcacgcgc cgcatctgcc gccgcccagt ctttcgcttt acgggcatcc
     1981 agacgctgtt gaattaacgc ttcaatctca gccacttcgc tgtcgtctgc ctgcgcgccg
     2041 ctttgcagga acgcttccgg ttcttgctcc agcaggccca atacagcgga aagtttacgc
     2101 aggtgagatg ccattgcatt cgccgctgcc atatcttctg ctttcagacg gtttacttca
     2161 cgcgccatat caaacagtac ggaataggct tccggggtgt tgaaatcgtc gtccatcgct
     2221 tcaataaagc gcgcttcaaa cgcttcgcca ccggcaggcg caacggtttt atctgtgccg
     2281 cgcagcgcag tgtagagacg ctccagcgcc gcacgcgtct gcttcaggtt ctcttcgctg
     2341 tagttcaact ggctgcgata gtggcccgac atcaggaagt aacgcacggt ttccgcgtcg
     2401 tagtatttca gcacatcgcg cacggtaaag aagttaccca gcgatttgga catcttctcg
     2461 cggtcaacca tcaccattcc ggagtgcatc cagtagttca catactgacc atcatgggca
     2521 caggtggact gcgcgatttc gttctcgtgg tgcgggaaca tcaggtctga accgccgccg
     2581 tggatatcaa agtggttacc cagctgcttg cagttcatgg ccgaacattc aatgtgccag
     2641 ccaggacgac ccgcgcccca cggagacggc cagctcggtt cgccctcttt cgacatcttc
     2701 cacagaacga agtccatcgg gttgcgtttg tcatcaacca cgtcaacgcg cgcgccagcc
     2761 tgcagctggt cgagatcctg acgcgacagc acgccataag tcggatcggt cgggacgtcg
     2821 aacatcacgt cgccgttgtc agccacataa gcgtgacctt tggcgatcag ttgttcagtg
     2881 agttcaataa tttctgcgat atggtgcgtc gcgcgcggct ccatatccgg gcgcagaatg
     2941 ttcaaagcat caaaatcttt gtgcatttcg gcgatcatgc gatccaccag cgccacaaag
     3001 ctttcgccat tttcattggc gcgtttgatg attttgtcgt cgatatcggt aatgttgcgc
     3061 acatacttca gcttatagcc gaggaaacgc agatagcgcg caaccacgtc aaaagcaaca
     3121 aaggtacgcc cgtgaccgat atgacagaga tcgtaaacgg tgattccaca cacgtacatg
     3181 ccgacttccc cggcgtgaat aggcttaaat tcctcttttt ggcgtgtcag agtattgaag
     3241 atttttagca tcgaagattc cgtttagaca tgtgtgggta attgagttgc gtataatacc
     3301 catatttccc gcgcgaatca gcatacattg cgtgatgatc cgatcgtgcg gttatgctat
     3361 aacaccaccc tatatatgac ccgaaccggg ttgaagcacc aatcaaacgg aacaggatgc
     3421 aaaaatggtt actttccaca ccaatcacgg cgatattgtc atcaaaactt ttgacgataa
     3481 agcacctgaa acagttaaaa acttcctgga ctactgccgc gaaggttttt acaacaacac
     3541 cattttccac cgtgttatca acggctttat gattcagggc ggcggttttg aaccgggcat
     3601 gaaacaaaaa gccaccaaag aaccgatcaa aaacgaagcc aacaacggtc tgaaaaatac
     3661 ccgtggtacg ctggcaatgg cccgtactca ggctccgcac tctgcaactg cacagttctt
     3721 catcaacgtg gttgataacg acttcctgaa cttctctggc gaaagcctgc aaggttgggg
     3781 ctactgcgtg tttgctgaag tggttgaagg catggacgtg gtagacaaaa tcaaaggtgt
     3841 tgcaaccggt cgtagcggta tgcaccagga cgtgccaaaa gaagacgtta tcattgaaag
     3901 cgtgaccgtt agcgagtaat cgtggcgaca ctctttattg cagatcttca tctctgcgtg
     3961 gaagaaccgg cgatcaccgc cggttttctg cgttttttag cgggggaagc tcgcaaggcc
     4021 gacgcgctgt atattcttgg cgatctgttt gaagcgtgga ttggcgacga cgatcccaat
     4081 ccactccatc gccagatggc ggcagcgatc aaagcggtgt ccgattccgg cgttccctgt
     4141 tatttcattc atggcaaccg tgattttctg ctcggcaaac gctttgcccg tgaaagtggc
     4201 atgacgttat tgccggaaga aaaggtgctc gaactttatg gccgccgggt gttgattatg
     4261 catggcgaca cgctgtgcac cgatgacgcg ggttatcagg cttttcgcgc caaagtccac
     4321 aaaccctggc tgcaaatgct attcctcgcc ctgccgttgt ttgtgcgcaa acgcattgcc
     4381 gcgcgaatgc gcgcgaacag caaagaagcc aacagcagta aatcgctggc gatcatggac
     4441 gttaaccaaa acgcagtggt cagtgcgatg gaaaaacatc aggtgcaatg gctgatccac
     4501 gggcataccc atcgcccggc ggtgcatgaa cttatcgcca accagcaacc tgcttttcgc
     4561 gtggtactgg gtgcctggca tacggaaggt tcgatggtga aagtcacggc ggatgacgtt
     4621 gagctgattc attttccgtt ttaaaaaaac cacaactttg ctgatttcac agccacgcaa
     4681 ccgttttcct tgctctcttt ccgtgctatt ctctgtgccc tctaaagccg agagttgtgc
     4741 accacaggag ttttaagacg catgtcttcc cgcaataatc cggcgcgtgt cgccatcgtg
     4801 atggggtcca aaagcgactg ggctaccatg cagttcgccg ccgaaatctt cgaaatcctg
     4861 aatgtcccgc accacgttga agtggtttct gctcaccgca cccccgataa actgttcagc
     4921 ttcgccgaaa gcgccgaaga gaacggttat caggtgatta ttgcgggcgc aggtggcgca
     4981 gcgcacctgc caggcatgat tgccgccaaa acgctggtgc cggtgctggg cgtgccagta
     5041 cagagcgccg cactgagcgg tgtcgatagc ctctactcca tcgtacaaat gccgcgcggc
     5101 attccggtgg gtacgctggc gattggtaaa gctggcgcgg caaacgcggc attactggca
     5161 gcacaaattc tcgcgactca cgataaagag ctacaccagc gtctgaatga ctggcgcaaa
     5221 gcccagaccg acgaagtgct ggaaaatccg gacccgcgag gtgcggcatg aaacaggttt
     5281 gcgtcctcgg taacgggcag ttaggccgta tgctgcgtca ggcaggcgaa ccgttaggca
     5341 ttgctgtctg gccggtcggg ctggacgctg aaccggcggc ggtgcctttt caacaaagcg
     5401 tgattaccgc tgagatcgaa cgctggccgg aaaccgtatt aacccgcgag ctggcgcgtc
     5461 atccggcctt tgtgaaccgc gatgtgttcc cgattattgc tgaccgtctg actcagaagc
     5521 agcttttcga taagctccac ctgccgaccg cgccgtggca gttacttgcc gatcgcagcg
     5581 agtggcctgc ggtgtttgat cgtttaggtg aactggcgat tgttaagcgt cgcactggtg
     5641 gctatgacgg tcgcggtcaa tggcgtttac gcgccaatga aaccgaacag ttaccggcag
     5701 agtgttacgg cgaatgtatt gtcgagcagg gcattaactt ctctggtgaa gtgtcgctgg
     5761 ttggcgcgcg cggctttgat ggcagcaccg tgttttatcc gctgacgcat aacctgcatc
     5821 aggacggtat tttgcgcacc agcgtcgctt ttccgcaggc caacgcacag cagcaggcgc
     5881 aagccgaaga gatgctgtcg gcgattatgc aggagctggg ctatatgggc gtgatggcga
     5941 tggagtgttt tgtcaccccg caaggtctgc tgatcaacga actggctccg cgtgtgcata
     6001 acagcggtca ctggacacaa aacggtgcca gcatcagcca gtttgagctg catctgcggg
     6061 cgattaccga tctgccgtta ccgcaaccag tagtgaataa tccgtcggtg atgatcaatc
     6121 tgattggtag cgatgcgaat tatgactggc tgaaattgcc gctggtgcat ctgcactggt
     6181 acgacaaaga agtccgtccg gggcgtaaag tggggcatct gaatttgacc gacagcgaca
     6241 catcgcgtct gactgcgacg ctggaagcct taatcccgct gctgccgcca gagtatgcca
     6301 gcggcgtgat ttgggcgcag agtaagttca gttaagcagg tgctcatttg attgccggat
     6361 gcggcgtaaa cgccttatcc ggcttaccgc tccggtaccc attgtaggcc tgataagacg
     6421 cgtcaagcgt cgaatcaggc atggtgcacc gattgccgga tgctctcatc actacagcga
     6481 aatacaggtc cccgcttcgc ccgccagcgt ctcttcaatt cgcgataacg ccccaatcca
     6541 cgcgggttta ctacggcttc tgacataacc actcaccgcc gttaccttcg gccccatcga
     6601 accatcggct ttggcaaatg gcgctaactc atccggtgtg gcatggcgaa tggcacgttg
     6661 ctgcggcgtt ccccagtttt catataccgc atcagcatcg gtgaggatca ccagtccatc
     6721 ggcattaatc tgctcggcga gcaacgcagt ggcgagatct ttatcaatca ccgcttcact
     6781 ccctgcccca tcttccgtca caggcacacc gccgccgcca ctgcaaatca ccacatgccc
     6841 ctctttgagc aacaactcga tggcttcgct gtcgagaatt ttacgcggtt gcggagacgc
     6901 caccacccgg cgcaaatatt taccatcacg tttcatctgc cagccgtaag ccgcttccag
     6961 tgcctcttgt tcttctggct gataaaccgg accaataaat ttctctggct gcaaaaacgc
     7021 cggatcatca ggcgaaacct caatgcgcgt cagcaccgtc gtaacaggcg gtatctgcgg
     7081 ctgtgcgctc aagctctgcg ccagcatata gcctcatccc ctggctttcc gccaccagca
     7141 catccagcgg atacggttct acctctttcc acgccagatt ctgtaacgcc agcatcccca
     7201 cctgcggccc gttgccgtga acaatcgcca gccgataaga acgggccagg cgtgccagcg
     7261 cgggtacagc actggcgata ttgcgatatt gattttccgc cgtcagcgcc tcaccgcgct
     7321 ggagtaaggc gttgccccca agagctacaa ccagtgtttt catggttttc cttgtaataa
     7381 ttgttggcca agccagaacc ccagcagcgt atctgcccct gacgtatgcc ccagcgccag
     7441 cagcgaatca atcgcaacag cggtacgttt cgggcaactc agagcatgga caaagtgcag
     7501 gagtggcgag gcgaaatatc cttgcgcggc ataacgtaaa taactgacgc tcaccgctgt
     7561 ggtaacgagt tgaagattgt cggaacaggc aaaaaacggg cgaccggcgc gcgcatctaa
     7621 agcgccataa taccaagccg ccagcagcat tccgctcaac gtgtcatcat gacttggcgt
     7681 taatccgggg cctttaccca gccagtgccg ccagtcggtc ttaacgccat tgagcgcggc
     7741 ctgaaaacag tgacgaaact ggcgtaattc agcggtcagc ggatcgcttg ccgccatcgc
     7801 cagtggtccg aaaagtccgg tttcctccgc gcgttgcatc catgcagctg caagcggttg
     7861 aggatgcgaa ggcggcgtaa tacgcagcaa acaataacgc tgtggctgtt taaccgtgaa
     7921 acgcccgagg cgaatccctt gagccacaac ctgtggtcgt tcattgccgc ataatccacc
     7981 gcataacgca tcgaattgcg cgcggcgaag cacccatcct ccggggccga aaccactacc
     8041 ctgacgatgc agcgttaaca gttcgccgct ttccgtcatc aggttaatcg cccgccgcca
     8101 cactcccgct aaccgccagg actggcgata attcggtgcg ctactgctgg caagcagagg
     8161 atggatgatc gtcattgcgc gttcctcaac caatccccat gctttcagcc agtgcttcca
     8221 gcgcctgttc aaagcacgcc agcggtgccc gcacggtgcc tgcgccaatc tgcccgatcc
     8281 ccgcctcttt atgggcgata ccggtattga tgagtggcgt aatgccggtt tctaccacgc
     8341 gacgaatatc cagccccagg cacgcgccct gaaaatccca gcctgggatc tgcaactgca
     8401 tattgcgttc aaggtaaatt tccgccatct cttcagatac cgccctggcc gcttccatgc
     8461 cacccgcacc gacaaagcgc gttacgccag gcgctgcgat cattgccgca cctccgatac
     8521 caaaggtttc ggtaatcgcg ctatcgccca tatccgggtt cgcctgctcc tgcgagaagc
     8581 cggtgaaaaa cagaccttgc ggagtgttta caggcgcagt aaaccagcgt tcacccagcc
     8641 cgcttacccg aatcccgaac atattgccgt tgcgggtcat agccgtaacg atgctgcctg
     8701 cgcggatcat cgcgccagca tccatcgccg ccttgcagta ggccatcgcg aggttgagga
     8761 agaactgatc ggtcacgctg aggaaatcga tcacttccgc aatgtgctgt ttatcatgat
     8821 cgaggcgagc aatttgtggg gccagcgtac gcattaacag tgctgaggaa gcaatattgc
     8881 gttgatggaa ctcatcgccc atcgtaatgc cctgcgccat catcgccgtg agatcgatac
     8941 cgtgctccat gcgccccagc gccgcgctta atactggcat taacacatcg cgcatccagc
     9001 gatggcgagt caggacatct tcgccgtaag cgccaaaacg catcactttg ccgatacctt
     9061 cgttgaggtt gcagtacgcc cggttgccgt cggtcacgtt ctcgaccacc agcatcggca
     9121 tactggcaga agtaatgccg cccattggcc cgacggcatt cacatggtga caaggaatga
     9181 agttcacttc cccctgctcc agcatcgcca gtgcctgcgc ttcatctttc gcccagcctt
     9241 cgaacagaca tccgcccacg cacgcccctt tcatgggtcc ggtcatctcc tgccagcgca
     9301 ttggcggccc ggcgtgaagc agtgttttgc cctcgtttag ttcgctgata agtgaaaaag
     9361 ccggttgcac atccagccag tgtggacgag cacgacgaat ttgttcgata accgcagcat
     9421 tggcttgcgc cactgatgta aacatgggaa ccccttattg caaacgttct aataaacgag
     9481 ccagtttttt attgccgccg gcgactggcg accattggta atgcacaacc ggtttgctgg
     9541 cgctttgtag ctccagcgca aagctgcgta atccgatgtt aatcacggcg acgttttcca
     9601 gtaatgacgg tgtatgttgc tgtgcggcag gcgagagcgg ataaattaac gctgccgcca
     9661 gcaaggtggc ttccggcagc gaactcacta ccgcgatccc cgcatcttcc agcgtggcga
     9721 tttgctgcga gcggcattgc gggtcacgtt cagtgcctgt caccgtggca atggcataca
     9781 gtggttgatt atctgaacgc gcggcacagg ctttttgcta ggcgcttacc agcgaggcgg
     9841 caggatcggc agtcgcaccg aagccaatca cgacatcaag tagcaatacg cgcacttgtg
     9901 gtttagcgcc gagatcggca attaactggt tgcgtaaggc tgggtcgatc atcggatggg
     9961 gacgcccgac ggtgtagaaa tcatcgccga ggtcaataat ctggtgacca tcggcgtcga
    10021 gcatcatgcc gtgatgatgg gtatcgtcgg cttccacgcc aaggtgtcca gcaagtaatc
    10081 ccgccgcttc ggcagccagc gtaccgccgg tatacaaacc gcaaataaat ccgctgctga
    10141 caggcgctat tgcgttacgt cgcgccgtga cgcgtgaaag caggcaagcc aggcgtgcgg
    10201 cctcatccag cgaggaggca aaccagacat tctcgtcgcg ggccaccgcc ggggtataac
    10261 ctaaaaacag cgccaccatc ggtttgccgg ttgctttcat ggcattaaca attttcagac
    10321 gcacagcttc
//
LOCUS       DADMJB010000149        10242 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.151, whole genome shotgun sequence.
ACCESSION   DADMJB010000149 DADMJB010000000
VERSION     DADMJB010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10242)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10242)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10242
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.151"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            141..2020
                     /gene="kup"
                     /locus_tag="JN078_003315"
                     /pseudo
     CDS             141..2020
                     /gene="kup"
                     /locus_tag="JN078_003315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102304.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="low affinity potassium transporter Kup"
     gene            2187..2606
                     /gene="rbsD"
                     /locus_tag="JN078_003316"
     CDS             2187..2606
                     /gene="rbsD"
                     /locus_tag="JN078_003316"
                     /EC_number="5.4.99.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709562.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribose pyranase"
                     /protein_id="HAY9042406.1"
                     /translation="MKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMAL
                     TQGVPSFMQVLGVVTNEMQVEAAIIAEEIKQHNPQLHETLLTHLEQLQKHQGNTIEIR
                     YTTHEQFKQQTAESQAVIRSGECSPYANIILCAGVTF"
     gene            2614..4083
                     /gene="rbsA"
                     /locus_tag="JN078_003317"
                     /pseudo
     CDS             2614..4083
                     /gene="rbsA"
                     /locus_tag="JN078_003317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418205.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter ATP-binding protein RbsA"
     gene            4088..5053
                     /gene="rbsC"
                     /locus_tag="JN078_003318"
     CDS             4088..5053
                     /gene="rbsC"
                     /locus_tag="JN078_003318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter permease"
                     /protein_id="HAY9042407.1"
                     /translation="MTTQTVSGRRYFTKAWLMEQKSLIALLVLIAIVSTLSPNFFTIN
                     NLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVA
                     AALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADL
                     FGWFGIGRPLGVPTPVWIMGIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNK
                     IKIIVYSLCGLLASLAGTIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIV
                     GTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ"
     gene            5078..5964
                     /gene="rbsB"
                     /locus_tag="JN078_003319"
                     /pseudo
     CDS             5078..5964
                     /gene="rbsB"
                     /locus_tag="JN078_003319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312720.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter substrate-binding protein
                     RbsB"
     gene            6090..7019
                     /gene="rbsK"
                     /locus_tag="JN078_003320"
     CDS             6090..7019
                     /gene="rbsK"
                     /locus_tag="JN078_003320"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HAY9042408.1"
                     /translation="MQNAGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKG
                     ANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFV
                     NGEGENVIGIHAGANAALSPALVEAQRERIANASALLMQLESPLESVMAAAKIAHQNK
                     TIVALNPAPARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIR
                     TVLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIR
                     FAHAAAAIAVTRKGAQPSVPWREEIDAFLDRQR"
     gene            7023..8015
                     /gene="rbsR"
                     /locus_tag="JN078_003321"
     CDS             7023..8015
                     /gene="rbsR"
                     /locus_tag="JN078_003321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose operon transcriptional repressor RbsR"
                     /protein_id="HAY9042409.1"
                     /translation="MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELN
                     YAPSALARSLKLNQTHTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQ
                     RMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
                     SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTG
                     DFEFNGGFDAMRQLLSHPLRPQAVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDI
                     ELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQLTPILMERGSA"
     gene            complement(7981..9408)
                     /locus_tag="JN078_003322"
     CDS             complement(7981..9408)
                     /locus_tag="JN078_003322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HAY9042410.1"
                     /translation="MSDKKKRSMAGLPWIAAMAFFMQALDATILNTALPAIAHSLNRS
                     PLAMQSAIISYTLTVAMFIPVSGWLADRFGTRRIFTLAVSLFTLGSLACALSNSLPQL
                     VVFRVIQGIGGAMMMPVARLALLRAYPRNELLPVLNFVAMPGLVGPILGPVLGGVLVT
                     RATWHWIFLINIPIGIAGLLYARKHMPNFTTARRRFDITGFLLFGLSLVLFSSGIELF
                     GEKIVASWIALTVIVTSIGLLLLYILHARHTPNPLISLDLFKTRTFSIGIVGNIATRL
                     GTGSVPFLMPLMLQVGFGYQAFIAGCMMAPTALGSIIAKSMVTQVLRRLGYRHTLVGI
                     TVIIGLMIAQFSLQSPAMAIWMLILPLFILGMAMSTQFTAMNTITLADLTDDNASSGN
                     SVLAVTQQLSISLGVAVSAAVLRVYEGMEGTTTVEQFHYTFITMGIITVASAAMFMLL
                     KTTDGNNLIKRQRKSKPNRVPSESE"
     gene            complement(9431..10123)
                     /locus_tag="JN078_003323"
     CDS             complement(9431..10123)
                     /locus_tag="JN078_003323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312724.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FadR family transcriptional regulator"
                     /protein_id="HAY9042411.1"
                     /translation="MPLSAQQLAAQKNLSYVLAEKLAQRILKGEYEPGTILPGEIELG
                     EQFGVSRTAVREAVKTLTAKGMVLPRPRIGTRVMPQSNWNFLDQELLTWWMTEENFHQ
                     VIDHFLVMRICLEPQACLLAATVGTAEQKAHLNTLMAEMAALKKNFRRERWIEVDMAW
                     HEHIYEMSANPFLTSFASLFHSVYHTYFTSITSDTVIKLDLHQAIVDAIIQSDGDAAF
                     KTCQALLRSPDK"
BASE COUNT         2494 a         2465 c         2712 g         2571 t
ORIGIN      
        1 aaggggggta tttttctttg agccaggtta atgtggccgc atttaggagt acgattttgc
       61 cgttaatcgt gcatactgtg cgcttttttg tgggccaagg gactaagcac acatttcata
      121 tttcaacgaa agactagtct atgagcactg ataataagca atcattgccc gcgattaccc
      181 tcgcggcgat tggagttgtc tacggcgata ttggtaccag cccgttatat acacttcgtg
      241 aatgtttgtc cggccagttt ggttttggcg ttgaacgcga tgccgtgttt ggctttttat
      301 cgctgatctt ctggctgcta atctttgtgg tttccattaa atatctcacc ttcgtgatgc
      361 gggcaggatg cgggcagata acgccggtga gggggggatc ctgacgttga tgtcgcttgc
      421 cgggcgtaat acgtcggcgc gaaccacatc aatgctggtg attatggggc taatcggcgg
      481 cagctttttc tatggtgaag tcgtcataac acccgctatt tcggtgatgt cagccattga
      541 aggtctggaa atcgtcgccc cgcagctgga tacctggata gttcccctct caattatcgt
      601 tctcacttta ttatttatga ttcaaaaaca tggcacggct atggtcggta agctgtttgc
      661 gccgatcatg ctgacctggt ttttgattct ggcaggactg gggttacgta gcattattgc
      721 taacccggaa gtgctgcatg cgctgaatcc aatgtgggcg gtgcatttct tccttgaata
      781 caaaacggtt tcttttattg cattaggggc agtggtgttg tcgattacgg gggtcgaggc
      841 gctgtatgct gatatggggc actttggtaa gttccctatt cgcctggcgt ggttcaccgt
      901 cgtattacct tccttgaccc ttaattactt cggtcaggga gcgctgttgt taaagaaccc
      961 ggaagcgatt aagaacccgt tcttcctgtt ggcaccggac tgggcgctga tcccgctgct
     1021 gatcatcgcc gcactggcga cggtaattgc ctcgcaggcg gttatctctg gcgtcttctc
     1081 attgacgcgt caggcggtac gtctgggata tttgtcgccg atgcgcatta ttcacacctc
     1141 cgaaatggag tcagggcaaa tctatattcc gtttgtgaac tggatgctct atgtcgcggt
     1201 cgtgattgtg attgtcagct ttgagcactc cagcaacctg gcggcggcgt acgggattgc
     1261 ggtgaccgga accatggtgc tgacgtctat tctctcgact accgtggcac gtcagaactg
     1321 gcactggaat aagtattttg ttgcgctgat cctgattgct ttcctttgtg tcgatattcc
     1381 attgttcacc gctaacctcg ataaactgct ctccggcggt tggttgccat tgagcctcgg
     1441 tacggtgatg tttatcgtga tgaccacctg gaagagcgag cgtttccgct tgctgcggcg
     1501 gatgcatgaa catggtaact ctctggaagc gatgattgct tcgctggaga aatcaccgcc
     1561 tgttcgcgtg cccgggaccg cggtgtatat gtcgcgtgca atcaacgtca ttccctttgc
     1621 gctgatgcat aaccttaaac ataacaaggt attgcatgag cgggtgattc tgttaactct
     1681 gcgtaccgaa gacgcgccat atgtccataa tgtccgtcgg gtacagattg aacaactgtc
     1741 gctcactttc tggcgcgtgg tggcaagtta tggttggcga gaaacgccaa acgtggaaga
     1801 agttttccac cgctgcggtc tggaaggatt aagttgccgg atgatggaaa cctccttctt
     1861 tatgtcgcat gagtcgttga tcctcggcaa acgcccgtgg tatttgcgtc tgcgcggcaa
     1921 gctgtacttg ctgctgcaac gtaatgcgct gcgtgcacca gatcaatttg aaatcccgcc
     1981 aaacagggtt atcgaactgg gtactcaggt cgaaatctaa cgccagacgc ctcctttctc
     2041 cataaggggg cgtttttgtt ttcatggtta atcaccatgt aaaacgtttc gaggttgatc
     2101 acatttccgt aacgtcacga tggttttccc aactcagtca ggattaaact gcgggtcagc
     2161 gaaacgtttc gctgatggag aaaaaaatga aaaaaggcac cgttcttaat tctgatattt
     2221 catcggtgat ctcccgtctg ggacataccg atacgctggt ggtgtgtgat gctggtttac
     2281 ccatccccaa aagtacaacg cgtatcgata tggcattaac ccagggtgta ccttctttta
     2341 tgcaggtgct gggcgtcgtt acaaatgaaa tgcaggtcga ggctgccatt atcgcggaag
     2401 agatcaaaca acataatccg caactccacg aaacgttgct cactcacctt gagcagctgc
     2461 aaaaacacca gggaaatacc attgaaattc gttacaccac gcatgaacaa ttcaaacaac
     2521 aaaccgcaga aagtcaggcg gtaattcgca gcggagaatg ttctccgtat gcgaatatca
     2581 ttctctgtgc tggcgtgacg ttctgaggcc gtcatggaag cattacttca gcttaaaggc
     2641 atcgataaag ccttcccggg cgtaaaagcc ctctcgggcg ctgcgttaaa tgtctatccg
     2701 ggccgcgtga tggcgctggt gggcgaaaac ggcgcgggta aatccaccat gatgaaagtg
     2761 cttactggta tctatgctcg cgatgccggc acgcttttat ggctggggaa agaaacgaca
     2821 tttaccgggc cgaaatcttc ccaggaagcc gggattggga ttatccatca ggaactgaac
     2881 ctgatcccgc agttgaccat tgccgaaaac attttcctcg gtcgtgagtt tgttaatcgc
     2941 tttggcaaaa ttgactggaa aaccatgtat gccgaagcgg ataaattgct ggctaaactt
     3001 aacctgcgct ttaaaagcga caagctggtg ggcgatcttt ccatcggtga ccagcaaatg
     3061 gttgaaatcg ccaaagtgct gagctttgag tcgaaagtca tcattatgga tgaaccgacc
     3121 gatgcgctga ccgataccga aaccgaatcc ctgttccgcg tcatccgcga actaaaatcg
     3181 caaggccgcg gtattgtcta tatctcccac cgcatgaaag aaatcttcga gatttgcgat
     3241 gccgttaccg tttttcgtga cgggcaattt attgctgagc gcgaagtggc atcactgacc
     3301 gaagattcgc tgattgagat gatggtgggt cgcaagctgg aagatcaata tccacacctg
     3361 gacaaagcgc cgggagatat ccgcctgaaa gtcgataatc tctgcggacc tggcgttaac
     3421 gatgtctctt ttactttacg caaaggcgaa attcttggcg tctctggttt gatgggcgca
     3481 ggtcgtaccg aactgatgaa agtgctctac ggcgcactac cgcgcaccag cggttacgtc
     3541 accctggatg ggcatgaagt cgttacccgt tcaccgcagg atggcctggc aaacggcatt
     3601 gtgtatatct ccgaagaccg taaacgtgac ggtttagtgt tgggcatgtc agtaaaagag
     3661 aacatgtcgc tgacagcgct gcgctacttc agccgcgctg gcggcagttt gaagcatgcc
     3721 gatgaacagt aggctgtgag tgatttcatt cgtctgttta atgtgaaaac accgtcgatg
     3781 gaacaggcaa ttggtctgct ttccggtggc aatcagcaaa aagtgttgat ccttgatgaa
     3841 cctacccgtg gcgtagatgt cggcgcgaaa aaagagatct atcaactgat taaccagttc
     3901 aaagccgatg gcttgagcat cattctggtg tcatcggaga tgccagaagt attaggcatg
     3961 agcgatcgca tcatcgtcat gcatgaaggg catctcagcg gggaatttac tcgtgagcag
     4021 gccacccagg aagtgttaat ggctgccgct gtgggcaagc ttaatcgcgt gaatcaggag
     4081 taaaaaaatg acaacccaga ctgtctctgg tcgccgttat ttcacgaaag cgtggctgat
     4141 ggagcagaaa tcgcttatcg ctctgctggt gctgatcgcg attgtctcga cgttaagccc
     4201 gaactttttc accatcaata acttattcaa tattctccag caaacctcgg tgaacgccat
     4261 tatggcggtc gggatgacgc tggtgatcct gacttcgggc atcgacttgt ctgtaggttc
     4321 tctgttggcg ctaaccggcg cagttgctgc atctatcgtc ggcattgaag tcaatgcgct
     4381 ggtggctgtc gctgctgctc tcgcgttagg tgccgcaatt ggtgcggtaa ccggggtgat
     4441 tgtagcgaaa ggtcgcgttc aggcgtttat cgctacgctg gttatgatgc ttttactgcg
     4501 cggcgtgacc atggtttata ccaacggtag cccagtgaat accggcttta ctgagaacgc
     4561 cgatctgttt ggctggtttg gtattggtcg tccgctgggc gtaccgacgc cagtctggat
     4621 catggggatt gtcttcctcg cggcctggta catgctgcat cacacgcgtc tggggcgtta
     4681 catctacgcg ctgggcggca acgaagcggc aacgcgtctt tctggtatca acgtcaataa
     4741 aatcaaaatc atcgtctatt ctctttgtgg tctgctggca tcgctggccg ggaccattga
     4801 agtggcgcgt ctctcctccg cacaacccac ggcggggact ggctatgagc tggatgctat
     4861 tgctgcggtg gttctgggcg gtacgagtct ggcgggcgga aaaggtcgca ttgttgggac
     4921 gttgatcggc gcattaattc ttggcttcct taataatgga ttgaatttgt taggtgtttc
     4981 ctcctattac cagatgatcg tcaaagcggt ggtgattttg ctggcggtgc tggtagacaa
     5041 caaaaagcag taataacgac tacaggacat cttgaatatg aacatgaaaa aactggctac
     5101 cctggtttcc gctgttgcgc taagcgccac cgtcagtgcg aatgcgatgg caaaagacac
     5161 catcgcgctg gtggtctcca cgcttaacaa cccgttcttt gtatcgctga aagatggcgc
     5221 gcagaaagag gcggataagc ttggctataa cctggtggtg ctggactccc agaacaaccc
     5281 ggcgaaagag ctggcgaacg tgcaggactt aaccgttcgc ggcaccaaaa ttctgctgat
     5341 taacccgacc gactccgacg cagtaggtaa tgctgtgaag atggctaacc aggcgaacat
     5401 cccggttatc actcttgacc gccaggcaac gaaaggtgaa gtggtgagcc acattgcttc
     5461 tgataacgta ctgggtggca aaatcgccgg tgattacatc gcgaagaaag cgggtgaagg
     5521 tgccaaagtt atcgagctgc aaggcattgc tggtacatcc gcagcccgtg aacgtggcga
     5581 aggcttccag caggccgttg ctgctcacaa gtttaatgtt cttgccagcc agcagatttt
     5641 gatcgcacta aaggtttgaa cgtaatgcag aacctgttga ccgctcatcc ggatgttcag
     5701 gctgtattcg cgcagaatga tgaaatggcg ctgggcgcgc tgcgcgcact gcaaactgcc
     5761 ggtaaatcgg atgtgatggt cgtcggattt gacggtacac cggatggcga aaaagcggtg
     5821 aatgatggca aactagcagc gactatcgct cagctacccg atcagattgg cgcgaaaggc
     5881 gtcgaaaccg cagataaagt gctgaaaggc gagaaagttc aggctaagta tccggttgat
     5941 ctgaaactgg ttgttaagca gtagttttaa tcaggttgta tgacctgatg gtgacataaa
     6001 tacgtcatcg acagatgaac gtgtaatata aagaaaagca gggcacgcgc caccctaaca
     6061 cggtggcgca ttttatggac atcccgaata tgcaaaacgc aggcagcctc gttgttcttg
     6121 gcagcattaa tgctgaccac attcttaatc ttcaatcttt tcctactcca ggcgaaaccg
     6181 taaccggtaa ccactatcag gttgcatttg gcggcaaagg cgcgaatcag gctgtggctg
     6241 ctgggcgtag cggtgcgaat atcgcgttta ttgcctgtac gggtgatgac agcattggtg
     6301 agagcgttcg ccagcagctc gccactgata acattgatat tactccggtc agcgtgatca
     6361 aaggcgaatc aacaggtgtg gcgctgattt ttgttaatgg cgaaggtgag aatgtcatcg
     6421 gtattcatgc cggcgctaat gctgcccttt ccccggcgct ggtggaagcg caacgtgagc
     6481 gtattgccaa cgcgtcagca ttattaatgc agctggaatc accactcgaa agtgtgatgg
     6541 cagcggcgaa aatcgcccat caaaataaga ctatcgttgc gcttaacccg gctccggctc
     6601 gcgaacttcc tgacgaactg ctggcgctgg tggacattat tacgccaaac gaaacggaag
     6661 cagaaaagct caccggtatt cgtgttgaaa atgatgaaga tgcagcgaag gcggcgcagg
     6721 tactgcatga aaaaggtatc cgtactgtac tgattacttt aggaagtcgt ggtgtatggg
     6781 ctagcgtgaa tggtgaaggt cagcgcgttc ctggattccg ggtgcaggct gtcgatacca
     6841 ttgctgccgg agataccttt aacggcgcgt taatcacggc gttgctggaa gaaaaaccat
     6901 tgccagaggc gattcggttt gcccatgctg cagctgcgat tgccgtaaca cgtaaaggcg
     6961 cacaaccttc cgtaccgtgg cgtgaagaga tcgacgcatt tttagacagg cagaggtgac
     7021 gcttggctac aatgaaagat gttgcccgcc tggcgggcgt ttctacctca acagtttctc
     7081 acgttatcaa taaagatcgc ttcgtcagtg aagcgattac cgccaaagtt gaagcggcga
     7141 ttaaagaact caattacgcg ccatcagccc tggcgcgtag cctcaaactc aatcaaacac
     7201 ataccattgg catgttgatc actgccagta ccaatccttt ctattcagaa ctggtgcgtg
     7261 gcgttgaacg cagctgcttc gaacgcggtt atagtctcgt cctttgcaat accgaaggcg
     7321 atgaacagcg gatgaatcgc aatctggaaa cgctgatgca aaaacgcgtt gatggcttgc
     7381 tgttactgtg caccgaaacg catcaacctt cgcgtgaaat catgcaacgt tatccgacag
     7441 tgcctactgt gatgatggac tgggctccgt tcgatggcga cagcgatctt attcaggata
     7501 actcgttgct gggcggagac ttagcaacgc aatatctgat cgataaaggt catacccgta
     7561 tcgcctgtat taccggtccg ctggataaaa ctccggcgcg cctgcggttg gaaggttatc
     7621 gggcggcgat gaaacgtgcg ggtctcaaca ttcctgatgg ctatgaagtc actggtgatt
     7681 ttgaatttaa cggcgggttt gacgccatgc gccaactgtt atcacatccg ctgcgtcctc
     7741 aggccgtctt taccggaaat gacgctatgg ctgttggcgt ttaccaggcg ttatatcagg
     7801 cagagttaca ggttccgcag gatatcgcgg tgattggcta tgacgatatc gaactggcaa
     7861 gctttatgac gccaccatta accactatcc accaaccgaa agatgaactg ggggagctgg
     7921 cgattgatgt actcatccat cggataaccc agccgaccct tcagcaacaa cgattacaac
     7981 ttactccgat tctgatggaa cgcggttcgg cttagattta cgctgtcttt tgatcaaatt
     8041 attaccatcg gttgttttca gaagcatgaa cattgctgct gaagcaacag taataatgcc
     8101 catcgtgata aacgtatagt ggaattgttc gacagtcgtt gtgccttcca tcccttcata
     8161 aacgcgaagg acggccgcac ttacagcaac gcctaaacta atcgacagtt gctgcgtgac
     8221 cgccagaaca ctgttaccgc tgctggcgtt gtcatcggtc agatcggcaa gtgtgatggt
     8281 attcatcgcg gtaaattgcg tcgacatagc catccctaat ataaacaacg gcaagatcag
     8341 catccatatc gccattgccg gtgattgcaa agagaactga gcgatcatta gcccaataat
     8401 caccgtgatc cccactaacg tatggcgata gcccagacga cgtaagactt gggtaaccat
     8461 cgattttgca ataatggaac ctaacgctgt cggtgccatc atacagccgg caataaacgc
     8521 ctgataacca aatcctacct gtaacatcaa tggcataagg aacggtacac taccggtccc
     8581 cagacgggtt gcaatattgc ctacgatacc gatcgagaaa gtgcgggttt taaataaatc
     8641 taatgaaatt aatgggtttg gcgtgtgtcg cgcatggaga atatagagaa gcagtaaccc
     8701 gatgctggtg acaattaccg tcaaggcaat ccagctggcg acaatctttt ccccgaatag
     8761 ctctattccg cttgagaaga gaacaaggct gaggccaaac agcaaaaagc cagtgatatc
     8821 gaatctgcgt cgtgcggtgg tgaaattggg catatgtttg cgcgcgtaaa gaaggcccgc
     8881 aatacctatg gggatattga ttaaaaatat ccagtgccag gttgccctgg tgaccagcac
     8941 gccgccaaga acggggccta aaattggccc caccagaccc ggcatggcga caaaattcaa
     9001 tacaggaaga agttcattac gaggataagc acgcagtaag gccagccgag caacaggcat
     9061 catcattgcg ccgcctatcc cctgaataac ccggaagaca accagctgtg gtagcgaatt
     9121 agaaagtgcg caggccagag aacccaacgt gaacagactc acggcaaggg taaaaatgcg
     9181 acgcgtaccg aagcgatcgg ctagccatcc gcttaccgga ataaacatcg ccaccgtcag
     9241 cgtataactg atgatggctg attgcatcgc gagaggagaa cgattaaggc tatgagcgat
     9301 tgcgggtaag gcggtattca gaatagtggc atcaagtgcc tgcatgaaga aggccatcgc
     9361 cgcgatccac ggcaaacccg ccatactacg cttcttttta tcgctcattc aatgtcctgt
     9421 tatcgggtta tcacttatca ggtgagcgta gcagcgcctg acaagtttta aatgccgcgt
     9481 cgccatcgct ttggataatc gcatcgacaa tcgcctggtg cagatccagc tttatcactg
     9541 tgtcgctggt aattgacgtg aagtaagtgt gataaaccga atggaatagc gaggcgaatg
     9601 aggtcaaaaa cggattggcg ctcatttcat agatatgctc atgccaggcc atatcgactt
     9661 cgatccagcg ttcacggcga aagttctttt ttaatgccgc catttcggcc attaacgtat
     9721 tgagatgcgc cttctgttcc gcggtgccaa ccgttgctgc cagtaggcag gcttgcggct
     9781 ccagacagat acgcataacc agaaagtgat cgatgacctg atgaaagttc tcttctgtca
     9841 tccaccaggt aagcaattcc tgatcaagaa aattccagtt tgattgtggc atgacccggg
     9901 taccaattcg cggtcgcggt aaaaccatcc cttttgccgt taacgttttg accgcttcgc
     9961 gtaccgctgt acgactcact ccaaattgct cgcccagctc aatctcacca ggcaaaatgg
    10021 tgccgggttc atattcacct tttaagatgc gttgcgccag cttctcagcc agaacatacg
    10081 aaaggttttt ctgtgcagct aactgttgtg cgcttaaagg cattactaat cttccttttt
    10141 ctttttattc ctccttagta tgccaccagg aagtgtgatt acggttgcaa aaacggcaaa
    10201 ttgcttgttt tatggcacat taacggggct tttgctgaaa aa
//
LOCUS       DADMJB010000150        10205 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.152, whole genome shotgun sequence.
ACCESSION   DADMJB010000150 DADMJB010000000
VERSION     DADMJB010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10205)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10205)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10205
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.152"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(265..1296)
                     /gene="rsmC"
                     /locus_tag="JN078_003324"
     CDS             complement(265..1296)
                     /gene="rsmC"
                     /locus_tag="JN078_003324"
                     /EC_number="2.1.1.172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1207)-N(2))-methyltransferase
                     RsmC"
                     /protein_id="HAY9042412.1"
                     /translation="MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPARLDTAASRA
                     HTQQFHHWQVLSRQMGDNARFSLVATVDDVADCDTLIYYWPKNKPEAQFQLMNLLSLL
                     PVGTDIFVVGENRSGVRSAEQMLADYAPLNKVDSARRCGLYFGRLEKQPVFDADKFWG
                     EYSVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHS
                     PKIRLTLCDVSAPAVEASRATLAANCVEGEVFASNVFSEVKGRFDMIISNPPFHDGMQ
                     TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGFHEVIAQTGRFKVYRA
                     IMTRQAKKG"
     gene            1399..1812
                     /gene="holD"
                     /locus_tag="JN078_003325"
     CDS             1399..1812
                     /gene="holD"
                     /locus_tag="JN078_003325"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit psi"
                     /protein_id="HAY9042413.1"
                     /translation="MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVAN
                     DLPALTDPLVSDVLRALTVSPDQVLQLTPEKIAMLPQGSRCNSWRLGTDEPLSLEGAQ
                     VASPALTELRANPTARAALWQQICTYEHDFFPRND"
     gene            1781..2227
                     /gene="rimI"
                     /locus_tag="JN078_003326"
     CDS             1781..2227
                     /gene="rimI"
                     /locus_tag="JN078_003326"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HAY9042414.1"
                     /translation="MNTISSLETTDLPAAYHIEQRAHAFPWSEKNFASNQGERYLNFQ
                     LTQNGKMAAFAITQVVLDEATLFNIVVDPDYQRQGLGRVLLKHLIDELEKRGVATLWL
                     EVRASNAAAIALYESLGFNEATIRRNYYPTTDGREDAIIMALPISM"
     gene            2242..2919
                     /gene="yjjG"
                     /locus_tag="JN078_003327"
     CDS             2242..2919
                     /gene="yjjG"
                     /locus_tag="JN078_003327"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HAY9042415.1"
                     /translation="MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQA
                     VNKPLWVDYQNGAITSLQLQHGRFESWAERLKVEAGLLNDAFINAMAEICTPLPGAVS
                     LLNAIRGNAKIGIITNGFSALQQVRLERTGLRDYFDLLVISEEVGIAKPNKKIFDYAL
                     ELAGNPDRSRVLMVGDTAESDILGGINAGLATCWLNAHHLEQPEGIAPTWTVSSLHEL
                     EQLLCKH"
     gene            3010..4599
                     /gene="prfC"
                     /locus_tag="JN078_003328"
     CDS             3010..4599
                     /gene="prfC"
                     /locus_tag="JN078_003328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HAY9042416.1"
                     /translation="MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAG
                     TVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRT
                     LTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVEN
                     ELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAA
                     VGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWA
                     PAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQV
                     RTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPN
                     FAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVV
                     SRLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSM
                     VNLRLAQERYPDVQFHQTREH"
     gene            4992..5597
                     /gene="osmY"
                     /locus_tag="JN078_003329"
                     /pseudo
     CDS             4992..5597
                     /gene="osmY"
                     /locus_tag="JN078_003329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418793.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone OsmY"
     gene            5724..5885
                     /locus_tag="JN078_003330"
     CDS             5724..5885
                     /locus_tag="JN078_003330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HAY9042417.1"
                     /translation="MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILFLV
                     SLFMGRKRP"
     gene            6007..7080
                     /locus_tag="JN078_003331"
     CDS             6007..7080
                     /locus_tag="JN078_003331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin family protein"
                     /protein_id="HAY9042418.1"
                     /translation="MGQRIPVTLGNIAPLSLRPFQPGRIALVCEGGGQRGIFTAGVLD
                     EFMRAQFNPFDLYLGTSAGAQNLSAFICNQPGYARKVIMRYTTKREFFDPLRFVRGGN
                     LIDLDWLVEATASQMPLQMDTAARLFDSGKSFYMCACRQDDYAPNYFLPTKQNWLDVI
                     RASSAIPGFYRSGVSLEGINYLDGGISDAIPVKEAARQGAKTLVVIRTVPSQMYYTPQ
                     WFKRMERWLGDSSLQPLVNLVQHHETSYRDIQQFIEKPPGKLRIFEIYPPKPLHSIAL
                     GSRIPALREDYKLGRLCGCYFLATVGKLLTEKAPLTRHLVPVVTPESIVIPPAPVAND
                     TLVAEVIDAPQANDPTFNNEDLA"
     gene            7077..7859
                     /locus_tag="JN078_003332"
     CDS             7077..7859
                     /locus_tag="JN078_003332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313363.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HAY9042419.1"
                     /translation="MICRFIDTHCHFDFLPFSGDEEASLQRAAQAGVGKIIVPATEAE
                     NFARVQALAEKYQPLYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEVGLDL
                     FGDDPQLERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLSRTGVVHGFS
                     GSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQG
                     QPNRPEQAVRVFDVLCELRPEPEDEIAEVLLNNTYALFSVSG"
     gene            complement(8073..8936)
                     /gene="yjjW"
                     /locus_tag="JN078_003333"
     CDS             complement(8073..8936)
                     /gene="yjjW"
                     /locus_tag="JN078_003333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjW family glycine radical enzyme activase"
                     /protein_id="HAY9042420.1"
                     /translation="MNSRCALVSKIIPFSCVDGPGSRLALFLQGCNLRCKNCHNPWTM
                     GRCNDCGECVPQCPHQALQIVDGKVLWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEV
                     LSHVRKAVLFIEGITVSGGEATTQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETG
                     WEKLLPVCDGAMLDLKAWGSECHQHLTGRDNQQIKRSICLLAERGKLAELRLLVIPDQ
                     VDYLHHIDELATFIKRLGDVPVRLNAFHAHGVYGEAQSWASATPEDVEPLADALKVRG
                     VSRLIFPALYL"
     gene            complement(8908..>10205)
                     /locus_tag="JN078_003334"
     CDS             complement(8908..>10205)
                     /locus_tag="JN078_003334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YjjI family glycine radical enzyme"
                     /protein_id="HAY9042421.1"
                     /translation="WLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLGQLDALLQPH
                     VRILTQDEIDVRIKRFWRYLDGTLPDAFMHANIGPSDSPITRAILRADAELKQVSPNL
                     TFIYDPEIPPDDLLLEVAKNICECSKPHIANGPVHDKIFTKGGYGIVSCYNSLPLAGG
                     GSTLVRLNLKAIAERSESLDDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENSFLV
                     KEGLINPERFVPMFGMYGLAEAVNLLCEKEGIAARYGKEAAANEVGYRISAQLAEFVA
                     NTPVKYGWQKRAMLHAQSGISSDIGTTPGARLPYGDEPDPIIHLQTVAPHHAYYYSGI
                     SDILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYR
                     AEGSRTNTTWLGEEATRNTRILERQPRVISHEQQMRFSQ"
BASE COUNT         2408 a         2664 c         2750 g         2383 t
ORIGIN      
        1 ccatcaattc ttaaaaagaa ttgctaccac ggaggcgcat tctagtggtt ttcagctttt
       61 cgtcaatagt taattatcgc cggaggtgta attgctggaa aaatgtccat caggaaacta
      121 gcgtgcaggt ttggtaggca tgcgggggca gatgccagat gcgacgctgg cgcgtcttat
      181 ctggcctacg aagggctaac gtgcaggttt tgtaggtcgg ataaggcgtt tacgccgcat
      241 ccggcaaggc ttgcggcggg atacttaacc ttttttcgcc tggcgggtca taatggcgcg
      301 atataccttg aaacgcccgg tttgcgcaat cacttcatgg aagccaaatg tttcatccag
      361 cacgtccgga taaggcagga aggcgttcgc tacaattcgc agctcgccgc cactattaag
      421 atgacgcacc gcgccgcgaa tcagcgtttg cgccgcatcc aggctggttt gcatcccatc
      481 gtggaacggc gggttggaga tgatcatatc aaaacgacct ttcacctcgg aaaagacgtt
      541 gctggcaaag acttcacctt caacacagtt ggccgcaagt gttgcgcggc tggcttctac
      601 cgctggcgca gagacatcgc acaaggtgag acgaattttc ggcgaatggc gcgcaaaggc
      661 aactgaaagc acccccgcgc cacagccgac atccagcact ttacctttcg tgtgcggagt
      721 taacgtcgag agcagcaact ggctaccgac atccagaccg tcgcggctaa acacgccagg
      781 cagcgttttg actgtcaggc catcgacgct gtattcgccc cagaatttat cggcatcaaa
      841 taccggctgt ttttccagac gaccaaaata gaggccacag cgacgagcgc tgtcgacttt
      901 attcaacggc gcataatctg ccagcatctg ctcggcgctg cgcacgccgc tgcggttctc
      961 gccaacgaca aaaatatctg tccccactgg cagcagagaa agtaaattca tcaactggaa
     1021 ctgggcttcc ggtttgttct tcggccagta gtaaatcagc gtatcgcaat ctgcgacgtc
     1081 atccaccgtg gcgaccagac tgaaacgggc gttatccccc atctggcggc ttaatacctg
     1141 ccagtggtgg aattgctggg tatgagcacg gctggccgcg gtatctaaac gcgcgggcag
     1201 gtcatcctgt aagtctccgg caaacagaat acggctttgt tcgaaatcat cactgtgacg
     1261 cagcaagact tcacttgccg gggtaaatgc agacatggaa tgctcctcaa ttgatactgg
     1321 cggcgattat agccatatgt tggcgcggta tcgacgaatt tgctatattt gcgcccctga
     1381 caacaggagc gattcgctat gacatcccga cgagactggc agttacagca actgggcatt
     1441 acccagtggt cgctgcgtcg ccctggcgcg ttgcaggggg agattgccat tgcgatcccg
     1501 gcacacgtcc gtctggtgat ggtggcaaac gatcttcccg ccctgaccga tcctttagtg
     1561 agcgatgttc tgcgcgcatt aaccgtcagc cccgatcaag tgctgcaact gacgccagaa
     1621 aaaatcgcga tgctgccgca aggcagtcgc tgcaacagct ggcggttggg tactgacgaa
     1681 ccgctatcac tggaaggcgc tcaggtggca tcaccggcgc tcaccgaatt acgggcaaac
     1741 ccaacggcac gcgccgcgtt atggcaacag atttgcacat atgaacacga tttcttccct
     1801 cgaaacgact gatttaccag cggcttacca cattgaacaa cgcgcccacg cctttccgtg
     1861 gagtgaaaaa aactttgcca gcaaccaggg cgagcgttat ctcaactttc agttaacgca
     1921 aaacggcaaa atggcggcgt ttgctattac gcaagtggtg ctggatgaag ctacattgtt
     1981 caatattgtg gtcgatcctg actatcagcg tcagggattg ggaagggtgc tgctgaaaca
     2041 tctgatcgac gaactggaaa aacgcggcgt ggcgacacta tggctggaag tccgtgcttc
     2101 aaacgctgcc gccattgccc tgtacgaaag tttaggcttt aacgaggcga cgattcgccg
     2161 caattactac cccaccacgg acggtcgcga agacgccatc atcatggcgt tgccaatcag
     2221 tatgtaagac aaggtggaat aatgaagtgg gactggattt tctttgatgc cgatgaaacg
     2281 ctgtttacct ttgactcatt caccggcctg cagcggatgt ttcttgatta cagcgtcacc
     2341 tttaccgctg aagattttca ggactatcag gccgttaaca agccactgtg ggtggattat
     2401 caaaacggcg cgatcacttc attacagctt cagcacgggc gtttcgagag ctgggccgaa
     2461 cggctgaaag ttgaagcagg cttgcttaac gatgccttta ttaatgcgat ggcggaaatc
     2521 tgcacgccgc tgccgggcgc ggtttctctg cttaacgcca ttcgtggcaa cgctaaaatc
     2581 ggcatcatca ccaacggttt tagcgccttg cagcaagtgc gtctggaacg gacgggcctg
     2641 cgtgattact ttgatttgct ggtgatttcc gaagaagttg gcattgccaa accgaataag
     2701 aaaattttcg attatgcgct ggaactggcg ggcaatcctg accgttcacg cgtgctgatg
     2761 gttggcgaca ctgccgagtc cgatattctc ggtggcatca acgccgggct tgcgacttgc
     2821 tggctgaatg cgcaccatct cgagcaacca gaaggcatcg cgcccacctg gaccgtttca
     2881 tcgttgcacg aactggagca gctcctgtgt aaacactgat tgcctccccc ccgttgatgg
     2941 gtaaaatagc cgcaattttt cgttttcaac aagcgcggcg cgatgccgct tactcaagaa
     3001 gaaagaatta tgacgttgtc tccttatttg caagaggtgg cgaagcgccg cacttttgcc
     3061 attatttctc acccggacgc cggtaaaact accatcaccg agaaggtgct gctgttcgga
     3121 caggccattc agaccgctgg tacagtaaaa ggccgtggtt ccaaccagca cgctaagtcg
     3181 gactggatgg agatggaaaa gcagcgtggg atctccatta ctacgtctgt gatgcagttt
     3241 ccgtatcacg attgcctggt taacctgcta gacaccccgg ggcacgaaga cttctcggaa
     3301 gatacctatc gtaccctgac agcggtggac tgctgcctga tggttatcga cgctgcaaaa
     3361 ggtgttgaag atcgtacccg taagctgatg gaagttaccc gtctgcgcga cacgccgatc
     3421 ctcaccttta tgaacaaact tgaccgtgat atccgcgacc cgatggaact gctcgatgaa
     3481 gttgagaacg agctgaaaat tggctgcgca ccgatcacct ggccgattgg ctgcggcaag
     3541 ctgtttaaag gcgtttacca cctttataaa gacgaaacct atctttatca gagcggtaaa
     3601 ggccacacga ttcaggaagt ccgtattgtt aaagggctga ataacccgga tctcgacgct
     3661 gcggttggtg aagatctggc acagcagcta cgtgacgaac tggaactggt gaaaggcgcg
     3721 tctaacgagt tcgacaaaga actgttcctt gcgggcgaaa tcactccggt attcttcggt
     3781 actgcgctgg gtaacttcgg cgttgatcat atgctggatg gcctggtgga gtgggcccct
     3841 gcgccgatgc cgcgtcagac tgatacccgt accgtagagg cgagcgaaga caaatttacc
     3901 ggcttcgtat ttaaaattca ggccaatatg gacccgaaac atcgcgaccg cgtggcgttt
     3961 atgcgcgtag tatccggtaa atatgaaaaa ggcatgaagc tgcgccaggt gcgtactgcg
     4021 aaagatgtgg ttatctccga cgcgctgacc tttatggcgg gcgaccgttc gcacgttgaa
     4081 gaagcgtatc cgggcgatat cctcggcctg cacaaccacg gcactattca gatcggcgac
     4141 acctttaccc agggtgagat gatgaagttc accggtattc cgaacttcgc accagaactg
     4201 ttccgtcgta tccgcctgaa agatccgctg aagcaaaaac agctgctcaa agggctggta
     4261 cagctttccg aagagggcgc ggtgcaggtg ttccgtccga tctccaacaa cgatttgatc
     4321 gttggtgctg ttggtgtgct gcagtttgat gtggtggtat cgcgcctgaa gagcgaatac
     4381 aacgttgaag cagtatatga atcagtcaac gttgccactg cccgctgggt agaatgtgcg
     4441 gacgcgaaga aattcgaaga gttcaagcgt aagaacgaaa gccaactggc gcttgatggc
     4501 ggcgataacc tcgcttacat cgctaccagc atggtcaacc tgcgcctggc gcaggaacgt
     4561 tatcccgacg ttcagttcca ccagacccgc gagcattaat tcttgcctcc agggcgcggt
     4621 agccgctgcg ccctgtcaat ttcccttcct tattagccgc ttacggaatg ttcttaaaac
     4681 attcactttt gcttatgttt tcgctgatat cacgagcggt ttcaaaattg tgatctatat
     4741 ttaacaaagt aatgacattt ctgacggcgt taaataccgt tcaatgcgta gatatcagta
     4801 tctaaagccg tcgattgtca ttctaccgat attaataact gattcagagg ctgtaatggt
     4861 cgttattcat cacccatcgc ttttgtgatg gcggccattg acttctgtag agggtgaagt
     4921 ctctccctat tcagcaatgc aacctcgtgt tgccaggctc aaattacgag caaacataca
     4981 ggaataaatc gatgactatg acaagactga agatttcgaa aactctgctg gctgtaatgt
     5041 tgacctctgc cgtcgcgacc ggctctgcct acgcggaaaa caacgcacag actaccaatg
     5101 aaagcgcagg gcaaaaagtc gatagctcta tgaataaagt cggtaatttc atggatgaca
     5161 gcgccatcac cgcgaaagtg aaggcggcgc tggtggatca tgacaacatc aagagcaccg
     5221 atatctctgt caaaaccgag caaaaagtcg tgaccctgag cggtttcgtt gaaagctagg
     5281 ctcaggccga agaggcagtg aaagtggcga aaggcgttga aggggtgacc tctgtcagcg
     5341 acaaactgca cgttcgcgac gctaaagaag gctcggtgaa gggctacgcg ggtgacaccg
     5401 ccaccaccag tgaaatcaaa gccaaactgc tggcggacga tatcgtccct tcccgtcatg
     5461 tgaaagttga aaccaccgac ggcgtggttc agctctccgg taccgtagat tctcaggcac
     5521 aaagtgaccg tgctgaaagt atcgccaaag cggtagatgg tgtgaaaagc gttaaaaatg
     5581 atctgaaaac taagtaattc gtcgtaattc gtcctcccga actttgtcgg gaggcgcgat
     5641 gtgcaccaca ctaaaaatat cgcattgagt gattttcacg ctcatatcaa gcggtgacat
     5701 taactatggt aaaggagacg cttatgtttc gttggggcat catatttctg gttatcgcgt
     5761 taatcgccgc cgcacttggg tttggtggtt tggccggtac cgctgcaggc gcagctaaaa
     5821 ttgtctttgt cgtcgggatt attctgttcc tggtgagttt gttcatgggc cgaaaacgac
     5881 cctagatttc agaccattaa gaaaatttta tccaaagcca gtccagcgga ctggcttttg
     5941 cggttttagc gaataataaa ttgcgttact ttgtcattct ttcacaacaa aaacaggaag
     6001 gcagaggtgg ggcagcgaat acctgtaacg cttggtaata ttgcgccgtt gtcgctaagg
     6061 ccgttccagc ctggacgaat agctctggtg tgcgaaggcg gcggacagcg tggaattttc
     6121 acggctggcg tgctggatga gtttatgcgc gcgcagttta atcctttcga tctttatctc
     6181 ggcacatctg ccggggcgca gaacctctcg gcgtttatct gcaatcagcc cggttacgcg
     6241 cgtaaagtca tcatgcgcta taccacaaaa cgcgaatttt tcgatccatt gcgctttgtc
     6301 cgtggaggaa atcttatcga tctcgactgg ctggtggagg ccaccgcaag ccagatgccg
     6361 ttgcaaatgg ataccgccgc gcggttgttt gacagcggca aatcgtttta tatgtgcgcc
     6421 tgtcgtcagg atgactacgc gcctaattac tttttaccaa ccaaacaaaa ctggctggat
     6481 gtgattcgcg cctccagtgc gatacctggc ttttatcgta gcggagtgtc gctggaaggc
     6541 attaactacc tggatggcgg gatcagtgat gcgattccgg ttaaagaggc ggcaaggcag
     6601 ggcgctaaaa cgttggtcgt cattcgcact gtgccgtcac aaatgtacta cacgccgcag
     6661 tggttcaaac gcatggaacg ctggctgggt gacagtagcc tgcagccgct ggtcaatctg
     6721 gtgcagcatc atgaaaccag ctatcgtgac attcagcaat ttattgagaa accaccgggc
     6781 aagctgcgga tattcgaaat ttatccgccg aagccattac atagtatcgc gcttggcagt
     6841 cggattccgg cgctgcgtga agactataaa cttgggcgtt tatgcggttg ttatttcctc
     6901 gccacggttg gcaagctatt aactgaaaaa gcgccgctta cccgccatct ggtgccagtg
     6961 gtgacgccgg aatcgatcgt tattccgcct gcgccagtcg ccaacgatac gctggttgcc
     7021 gaagtgattg acgctccgca ggcgaacgac ccgacattta acaatgagga tctggcttga
     7081 tttgccgttt tatcgacacc cactgccatt ttgatttcct gccgtttagt ggcgatgaag
     7141 aggccagcct gcaacgcgcg gcacaagcgg gcgtaggcaa gatcattgtt ccggcgacag
     7201 aggcggaaaa ttttgcccgt gtgcaggcgt tagcggaaaa atatcaaccg ctgtatgccg
     7261 cattgggctt gcatccaggt atgttggaaa aacatagcga tgtgtctctt gagcagctac
     7321 agcaggcgct ggaaaggcgt ccggcgaagg tggtggcagt gggggaggtc ggtctggatc
     7381 tcttcggcga cgatccgcaa cttgagaggc agcagtggtt actcgacgaa cagctgaaac
     7441 tggcgaaacg ctacgatctg ccggtgatcc tgcattcacg gcgcacacac gacaaactgg
     7501 cgatgcatct taaacgccac gatttatcgc gcactggcgt ggttcacggt ttttccggca
     7561 gcctgcaaca ggccgagcgg tttgtacagc tgggctacaa aatcggcgta ggcggtacta
     7621 tcacctatcc acgcgccagt aaaacccgcg atgtcatcgc aaaattaccg ctggcatcgt
     7681 tgttgctgga aaccgacgcg ccggatatgc cgctcaacgg ctttcagggg cagcctaacc
     7741 gaccggaaca ggctgtgcgg gtgtttgacg tgctttgcga gttgcgcccg gaaccagaag
     7801 atgagattgc cgaagtgttg cttaataata cgtatgcgtt gtttagcgtt agtgggtagt
     7861 ttacccttcg taggcagtat ccggcagtcg gcgcataatg cctgatgcga cgcttgtcgc
     7921 gtcttatcat gcctacaggt ttgtgccgaa ccgtaggccg gataaggcgt tcacgccgca
     7981 tccggcagtt ggcgcacaat gcctgatgcg acgcttgtcg cgtcttatca tgcctacaag
     8041 tctgtgccga accgtaggcc gtatccggca tgtcacaaat agagcgccgg aaatatcaac
     8101 cggctcaccc cgcgcacctt taacgcatca gccaacggct caacgtcttc cggcgtggcg
     8161 ctcgcccagc tttgcgcctc gccatacacg ccgtgggcat gaaacgcatt caggcgaacc
     8221 ggaacatcgc caagtctctt gataaacgtc gccagctcat cgatgtgatg caaataatcc
     8281 acctggtctg gaattaccag caaacgcagt tccgccagct tgccgcgctc tgcaagcaaa
     8341 cagatgctgc gcttaatctg ctgattatcg cgtccggtta agtgttgatg acattcgctc
     8401 ccccacgctt tgagatcgag cattgcgccg tcacacaccg ggagtaattt ttcccagccg
     8461 gtttcgctca acatgccgtt actgtccacc aggcaggtga ggtggcgcag ttgcggatcg
     8521 tttttgatag cagtaaacag cgccactaca aacggcagtt gggtcgtggc ttcgccgccg
     8581 cttaccgtta tcccttcaat aaacagcacc gctttgcgga catggctaag cacttcgtcc
     8641 acgctcatgg attgcgccat tggcgtggca tgttgcggac acatcttcag gcaggtatca
     8701 cactgctcgc agaccacagc gttccacagc actttgccgt caacaatctg caacgcctga
     8761 tgcggacact gtggcacgca ctctccgcaa tcattgcagc gtcccatcgt ccacggattg
     8821 tgacagtttt tgcagcgcag attgcagccc tgcagaaaca gagccagacg actgcctggc
     8881 ccgtcaacgc aggagaaggg gataatctta ctgactaaag cgcatctgct gttcatggct
     8941 tatcacgcgc ggctggcgtt ccagaatacg agtgttgcgt gtggcttctt cgcccagcca
     9001 ggtggtgttg gtgcgtgaac cttcggcgcg atatttttct aaatccgaca aacgcaccat
     9061 ataaccggta acgcgaacca gatcgttacc gctgacattg gcggtaaatt cacgcattcc
     9121 ggctttaaag gcaccgaggc aaagctgtac cagcgcctgc ggattacgtt tgatggtttc
     9181 gtcgagcgtc agaatgtcgc tgatgccgga ataataataa gcatgatgcg gggcgacagt
     9241 ttgcagatgg atgatcggat ctggctcatc gccatacggc aaacgcgcgc ccggcgtggt
     9301 gccgatatcg gaactgatcc ccgactgtgc gtgtaacatg gcgcgttttt gccagccata
     9361 tttcacgggg gtattggcga caaactccgc cagttgcgcg ctgatgcgat aacccacttc
     9421 atttgcggcg gcttctttac cgtagcgcgc ggcaatccct tctttctcac acagcaagtt
     9481 aaccgcttcc gccagcccat acatgccaaa cattggcaca aaacgttcag ggttaatcag
     9541 cccttctttc accaggaagc tattctcaaa gaagtgtgat tgttgataga ggaattcaca
     9601 ccgcgcatcg atgatggcga tctgctgctg gcagtagtgc ggtagagtgc gcgtaaagaa
     9661 gtcatccagc gattcgctgc gctcggcaat ggctttcagg ttaaggcgta ccagcgtgct
     9721 gccaccaccc gccagcggca gtgagttgta acagctcaca atcccgtagc ccccttttgt
     9781 gaaaatttta tcatgcaccg gaccgttggc gatgtgcggt ttgctacatt cacagatgtt
     9841 cttcgccact tccagcagca ggtcatcagg ggggatttca ggatcgtaga taaaggtcag
     9901 gttcggtgaa acctgcttca actctgcgtc tgcacgtaag atcgcgcggg taatgggcga
     9961 atcagacggg ccgatattgg cgtgcataaa ggcgtctggc agggttccgt cgaggtaacg
    10021 ccagaaacgt tttattcgaa catcgatctc gtcttgtgtt agaattctaa catgcggttg
    10081 caacaacgca tccagttgcc ctaggtagac cggcatcgat gtgaccgacg gtacgtggtg
    10141 gtaaagaatg gtcagcagag agagtgcgtc atcaagatct ttcgcgcctt ccagctccag
    10201 ccatt
//
LOCUS       DADMJB010000151        10168 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.153, whole genome shotgun sequence.
ACCESSION   DADMJB010000151 DADMJB010000000
VERSION     DADMJB010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10168)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10168)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10168
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.153"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(497..859)
                     /locus_tag="JN078_003335"
     CDS             complement(497..859)
                     /locus_tag="JN078_003335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YibL family ribosome-associated protein"
                     /protein_id="HAY9042422.1"
                     /translation="MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKAT
                     LEAEIARLREVHSQKLSKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTA
                     LGREMGLQEMTGFSKTAF"
     gene            1144..1353
                     /locus_tag="JN078_003336"
     CDS             1144..1353
                     /locus_tag="JN078_003336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042423.1"
                     /translation="MGKLGENVPLLIDKAVDFMASSQAFREYLKKLPPRNAIPSGIPD
                     ESVPLYLQRLEYYRRLYRPKQVEGQ"
     gene            complement(1365..1952)
                     /gene="mtlR"
                     /locus_tag="JN078_003337"
     CDS             complement(1365..1952)
                     /gene="mtlR"
                     /locus_tag="JN078_003337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor MtlR"
                     /protein_id="HAY9042424.1"
                     /translation="MVDQAQDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRS
                     FLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVI
                     NRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAALPPPPQFEPADSSL
                     YAMQIQRYQQAVRSTMVLSLTELISKISLKKAFQK"
     gene            complement(1952..3100)
                     /gene="mtlD"
                     /locus_tag="JN078_003338"
     CDS             complement(1952..3100)
                     /gene="mtlD"
                     /locus_tag="JN078_003338"
                     /EC_number="1.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709374.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HAY9042425.1"
                     /translation="MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARH
                     SYQVHVVGETEQVDTVSGVNAVSSIGDDVVDLIAQVDLVTTAVGPVVLERIAPAIAKG
                     LVKRKEQGNESPLNIIACENMVRGTTQLKGHVMNALPEDAKAWVEEHVGFVDSAVDRI
                     VPPSASATNDPLEVTVETFSEWIVDKTQFKGALPNIPSMELTDNLMAFVERKLFTLNT
                     GHAITAYLGKLAGHQTIRDAILDEKIRAVVKGAMEESGAVLIKRYGFDADKHAAYIQK
                     ILGRFENPYLKDDVERVGRQPLRKLSAGDRLIKPLLGTLEYSLPHKNLIQGIAGAMHF
                     RSEDDPQAQELAALIADKGPQAALAQISGLDANSEVVSEAVTAYKAMQ"
     gene            complement(3330..5231)
                     /locus_tag="JN078_003339"
     CDS             complement(3330..5231)
                     /locus_tag="JN078_003339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICBA"
                     /protein_id="HAY9042426.1"
                     /translation="MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLT
                     NETLAKLVGPMITYLLPLLIGYTGGKLVGGERGGVVGAITTMGVIVGADMPMFLGSMI
                     AGPLGGWCIKHFDRWVDGKIKSGFEMLVNNFSAGIIGMILAILAFLGIGPIVEALSKM
                     LAAGVNFMVVHDMLPLASIFVEPAKILFLNNAINHGIFSPLGIQQSHELGKSIFFLIE
                     ANPGPGMGVLLAYMFFGRGSAKQSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILG
                     GMTGVFTLTILGGGLVSPASPGSILAVLAMTPKGAYFANIAGVCAAMAVSFVVSAILL
                     KTSKVKEEDDIEAATRRMQDMKAESKGTSPLSAGDVTNDLSHVRKIIVACDAGMGSSA
                     MGAGVLRKKIQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLT
                     NFLDSGLYTSLTERLVAAQRHTENEVKVKDSFDDSSANLFKLGAENIFLGRKAATKEE
                     AIRFAGEQLVKGGYVEPEYVQAMLDREKLTPTYLGESIAVPHGTVEAKDRVLKTGVVF
                     CQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTTSVDE
                     VLELLAGRK"
     gene            5768..6130
                     /locus_tag="JN078_003340"
     CDS             5768..6130
                     /locus_tag="JN078_003340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3302 domain-containing protein"
                     /protein_id="HAY9042427.1"
                     /translation="MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAI
                     HTAGWVSLFTLHVIWPFLWIWATLYQPERGWGMQSHVASQEKATDPEIASLSDRISRL
                     EHQLAAEKKTDYSTFPEI"
     gene            6133..7269
                     /locus_tag="JN078_003341"
     CDS             6133..7269
                     /locus_tag="JN078_003341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HAY9042428.1"
                     /translation="MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLI
                     LLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQAR
                     VDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFS
                     ERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLE
                     QTVIRAPSNGYVTQVLIRPGTYAAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGD
                     DAEVVFNALPGQVFHGKLTSILPVVPGGSYQAQGGLQSLTVVPGTDGVQGTIELDPND
                     DIDALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH"
     gene            complement(7729..8166)
                     /locus_tag="JN078_003342"
     CDS             complement(7729..8166)
                     /locus_tag="JN078_003342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000763815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042429.1"
                     /translation="MADKAILWALISASTKEERKACSLSYFACKAAEAELGLAYMAAN
                     DNKEFLTSLSNIMRYKIDAGLSESYTCYLLSKGKIIRPYLKNLNPLQLAADCIETVNK
                     IKDKNKKIIDINSVNICSDDKNIKLRVNSTIMAIDDSIKCIDE"
     gene            complement(8874..9335)
                     /locus_tag="JN078_003343"
     CDS             complement(8874..9335)
                     /locus_tag="JN078_003343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HAY9042430.1"
                     /translation="MKACLLLFFYFSLIDQLHGADVKIKENESVMGSTAMTYDLSEEK
                     LMKLKYKSQHGDSEASFRLYQYYCFTKNNIDKQLRFLERSASQGNVTAQFNYGVFLSD
                     TNPTLSEYYNLNRAIYWMEFAVNNGNIDAKSKLQELKKLKRMDRRKNKENP"
     gene            complement(9347..10144)
                     /locus_tag="JN078_003344"
     CDS             complement(9347..10144)
                     /locus_tag="JN078_003344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001582091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HAY9042431.1"
                     /translation="MYHCDHRGLPLALISTEGATAWCAEYDEWSNLLSDENPHHLQQL
                     IRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPVINVDPQG
                     LVDINLYPESDLIHSVADEINIPGVFTIGGHGTPTSIESATRSIMTAKDLAYLIKFDG
                     NYKDGMTVWLFSCNTSKGQNSFASQLAKELHTNVIGPDTLWTWWGRGTNGKLKMDTVL
                     TAPTNLNSNKDLMAITTKDLGNWITYGPSGHPISNMQGTPEKPSDIR"
BASE COUNT         2606 a         2406 c         2316 g         2840 t
ORIGIN      
        1 tgtccattgt attattggtg atttatgttg ctttacatta atgacagtga tgtgtgtcga
       61 ttaaatattg ttttaagcat tcatcataaa aatgtatcat tcgtttcaaa agatgtctgt
      121 gtttgtatga atatattatt ttcgtggatt ctaatgatga ttattaataa atgtcaaata
      181 tgaaagaaac catgtctggg aaaaaattta cagataattt attgtatgaa tatgatgatt
      241 aaaatttcac aattaaatcc gaaaaaaaga gacgtaactg cttgttaatt aataaatgat
      301 atcttctata tatttttatt gtttataggt ggctatttcg gtaaaaatgc attttcagaa
      361 tatcaaccag cggtaaatcg acgtaaaggg agtgaattgt ttggtaatta ggcgagtaga
      421 caggagagtc cccgcattga ccagctaagg caagccagat gcgggttgat atgatcgaac
      481 cagtcgtctg aggcgcttaa aacgcagtct tagagaatcc agtcatctcc tgcaggccca
      541 tttcacggcc cagcgcggtc attgggtgca caaccaccag tccgcgaaca cttttcttca
      601 gcttgcccat atcagcctgc tcttttttgg taattgcgcg ctgaaacggc atcttcatca
      661 gcttctgtgc ttctttactc agtttttggc tatgaacctc acgcaggcga gcaatttctg
      721 cttccagcgt ggctttctct ttttccagct cggcatattt gtctgcggct tcaaccagcg
      781 acagatcggc ctgctggtgg cggatggcgt ccaggcgatc gctgagacgt ttgatttcgt
      841 ttttttcgac ttctttcatg tgatggcttc tgataaagat aaatttatag cccctagtat
      901 gcgcgaccag gtgctttgtt cacaactgat gacattgtaa tagttctgca acgtaatcat
      961 taacatgctc aaaaactacg caattcgttg attaattaag aaatctatag aaaaaagata
     1021 ataaacagca gcggatgatt attgaggatt cagcacgttt tccttaatgt catctttacc
     1081 gggaacctaa actaaaattg gtggccgcgc attcccggcg cggggtaata cggagatatc
     1141 atcatgggca aattaggtga aaacgttccg cttcttatcg ataaagccgt agatttcatg
     1201 gcatcaagcc aggcgttccg ggagtatctg aaaaaacttc ctccccgtaa cgcgattccg
     1261 tccggaatac ccgatgaaag cgtgccgtta tatctacaac gtctggagta ttatcgtcgg
     1321 ctttatcggc cgaagcaggt agaggggcag taagcagacg ttgcttactt ttgaaaggct
     1381 ttttttaagc tgattttgga aatcagctca gtcagtgaaa ggaccattgt tgatcgcaca
     1441 gcctgttgat agcgctgaat ttgcattgca tacaaactgg agtctgctgg ttcaaactgt
     1501 ggcggcggtg gtaacgccgc cacgcagtgc agttcaccaa agggtccaag gatttcgtcg
     1561 tcggtaaagg cgtactcgtt gccgtcgtga tttagctctt cacgcaatgc catcagcagt
     1621 tccgcatctt cgtattcctg gcggttaatg acgcccaacc cgtaaatgag ttttaaacgc
     1681 acagaaagat cgcccagcgg accgtcgccg tcgagtaacg gttctacagc atacttcacc
     1741 gcgtaatcgt ctttgcggaa tacctgaagc accagaagat ttaccgcctc ggtcaaaagc
     1801 tcgacggcgg tgatcagaaa gcttcgcacg gttttgccag cattcagacg ctcaagcaca
     1861 cggttttcaa aggcctgggt ttgttccatt gttgcctgca tatctgacaa tctgttattc
     1921 gggcgcaggg tgtcctgcgc ctggtccacc attattgcat tgctttataa gcggttaccg
     1981 cctcggatac aacctcactg ttggcatcaa gaccggaaat ctgtgccagc gccgcctgcg
     2041 gacctttgtc agcgatcagt gctgccagtt cctgagcctg cggatcatct tcactgcgga
     2101 agtgcattgc accagcaatc ccctgaatca gattcttgtg cggaaggctg tattccagcg
     2161 taccgagcag tggcttgatc agacggtcgc cagcactcag tttacgcagc ggctgacggc
     2221 ctacgcgctc tacatcatct ttcagatacg ggttctcaaa acgaccgagg attttctgga
     2281 tgtacgccgc atgtttgtct gcgtcaaagc cgtagcgctt gatcagtacc gcaccacttt
     2341 cttccatcgc accttttacc accgcgcgga ttttctcgtc gagaatagcg tcacgaatgg
     2401 tctgatgacc ggccagtttt ccgaggtacg cggttatagc atgacccgtg ttcagggtga
     2461 agagtttacg ttcgacaaat gccatcaggt tgtcggttaa ctccatgctt gggatgttcg
     2521 gcagtgcgcc tttgaactgc gttttatcga caatccattc gctgaaagtt tctaccgtca
     2581 cttccagcgg atcgttagtt gccgaagccg aaggcggtac gatgcggtca acggcggaat
     2641 cgacaaagcc aacgtgttct tctacccacg ctttggcgtc ttccggcagg gcgttcatca
     2701 catggccttt cagctgcgtg gtaccgcgta ccatgttttc acaggcgatg atgttcagcg
     2761 gggattcatt accttgttct ttgcgtttca ccagtccttt ggcgatagcc ggagcaatac
     2821 gttccagcac aaccgggcca acggcggtag tgactaaatc gacctgagca atcagatcaa
     2881 cgacatcatc accaatgctg ctgacagcat tgacgccgga aacggtatct acctgctcgg
     2941 tttcaccaac cacatgaacc tgatagctat gacgggcatt cagggcatca agtaccacct
     3001 gattgacatc ggcaaacgtc agttggatac ccgcgtctgc cagcagttta ccgataaagc
     3061 cacgaccgat attacctgcg ccaaaatgta atgctttcat agtattaacc ttcatcaatg
     3121 tttttacccg agagggctgg ggtgaggctt ttccctcacc caaaccctct ccgtgaggag
     3181 aggggcagcg ccggatgcgg cgtaagcgcc ttatccggcc tacaagaacg tgcaaattca
     3241 acaaatcgtg atgcatcctg taggcctgat aagcgtagcg catcaggcaa ttaaccccac
     3301 cttctccatg tggagagggt gggattggat tacttacgac ctgccaacag ttccagcact
     3361 tcatccacgc tggtggtgtg tgccagacgc tcgatgacgg actcatcatc cagtgcattg
     3421 gtcaggctgg tgataacctg aatgtgctcg ttgttacggg ctgcaatacc aatcaccaga
     3481 cgggcaatgt catcttcctc ttcaccgaag cgcacgcctt ccgggtactg gcagaacacc
     3541 acgcccgttt tcagtacgcg atctttcgct tcaaccgtac cgtgtggcac cgcgatagac
     3601 tcacccagat aagtcggggt cagtttttca cgatccagca tcgcctgaac gtattccggc
     3661 tcaacgtaac cgcctttcac cagctgctcg ccagcaaaac gaatcgcttc ttctttggtt
     3721 gctgctttgc gaccgaggaa gatgttctcc gcgcccagtt tgaacaggtt agcactggaa
     3781 tcgtcaaagc tgtctttcac tttcacttcg ttttcagtat ggcgctgggc agcaaccaga
     3841 cgttcggtta ggctggtgta caggccgctg tcgaggaagt tggtcagcga aatatgctgt
     3901 gcctgcggaa cctggcgcat agcgcgttcg gtcaggtcac ggtgagtgat gacgaggtcc
     3961 acatctggcg gcaggttgtt gatcgcgctg ttagtgaccg aaatctgcga cagacctgca
     4021 tcctgaattt tcttacgcag cacgcctgcg cccatcgcac ttgaacccat accggcatca
     4081 caggcaacga tgattttacg tacgtggctc aggtcgttag tcacatcgcc cgcagacagc
     4141 ggagatgtgc ctttagactc agctttcatg tcctgcatac gacgagttgc tgcttcaata
     4201 tcatcttctt ctttcacttt gctggttttc agcaaaatag cagagacaac gaaggagaca
     4261 gccatcgccg cacacacacc cgcgatgtta gcgaaataag ccccttttgg tgtcatcgcc
     4321 agtacagcaa ggatagaacc cggagatgcc ggagaaacca gaccaccgcc caggatagtc
     4381 agcgtgaaca cgccagtcat accgccgagg atgactgcga ggatcagacg cggattcatc
     4441 agcacatacg ggaagtagat ttcgtggata ccacccagga agtggatgat tgccgcaccg
     4501 cccgcagact gtttagcgct accacgacca aagaacatgt acgccagcag cacgcccata
     4561 cctggacctg ggttagcttc aatcaggaag aagattgatt tacccagttc atgggactgc
     4621 tgaataccca gcggcgagaa gataccgtgg ttaatggcgt tgttgaggaa caggattttc
     4681 gccggttcaa caaagataga cgccagcggc agcatgtcat ggacaaccat gaagttaacg
     4741 cccgcagcca gcattttgga cagggcttca acaatcgggc caatgccgag gaatgccaga
     4801 atagcgagga tcatcccgat gatgcctgcg gagaagttat tcaccagcat ctcaaaaccg
     4861 gatttgatct taccgtctac ccagcggtcg aagtgcttaa tgcaccagcc gcccagcgga
     4921 cctgcaatca tagaaccgag gaacatcggc atgtctgcgc cgacgataac gcccatggtg
     4981 gtgatggcac cgactacgcc gccacgttcg ccgcctacca gcttaccacc ggtataaccg
     5041 atcagcagcg gcaggagata agtgatcatc ggcccgacca gcttcgccag cgtctcgttc
     5101 gttaaccacc ctgttggaat aaataacgcg gtgatgatac cccacgcgat aaacgcgccg
     5161 atatttggca tcaccatgtt gctgaggaaa cgaccaaagc tttgcacttt gatcttaata
     5221 tcggatgaca taaaaacacc ccttcttatg tttgctgtcg cgcaggctgg aagcccgagg
     5281 ttttttgtta atgtggcggc agaggtagcc ggaccttgta gatactgcga aatctggcac
     5341 tgaatcggtt aactgtccag tcgacggcct tttgtgtgat attaatcaca taaatatagg
     5401 aggtagagag gtaattgacg tgacgttcat cacaaaacgc ttgtgtaaaa aagcaacaag
     5461 gcggcgattt tcgctaaaaa tggcatttaa atgtgagtag tatcacattt ttgttttgat
     5521 ggtttgttga atctttgtga tctgaatcac aagatatttt cttacggcgt tcacctgatg
     5581 tgatctacag catgttatgc cttcgtcata caatcgttat gtaactaagc aactcatcac
     5641 ctctaaaaat tattctttgg tgttatggcg agaatcgcga acccggatta ttgtcaaaat
     5701 atcagcctga ctcccttctg gctgccagcc caaaaacaac actgataaac gtgaatccga
     5761 ggcagatatg tttctaaact atttcgcgtt gggagtgctg atcttcgtct ttctggtgat
     5821 tttttatgga atcatcgcga tacatgacat cccttatctg attgccaaaa agcgcaatca
     5881 cccccatgcc gacgctattc atacggcggg ctgggtgagc ctgtttactc tgcatgttat
     5941 ctggccgttt ctgtggatct gggcgacgct ctatcaaccg gagcgtggct ggggtatgca
     6001 gtcacatgtt gcgtcgcagg agaaagcgac tgacccggaa atcgcctcac tttctgaccg
     6061 aatttcccgg ctggagcatc aactcgccgc cgagaaaaag actgactatt ccacgttccc
     6121 ggagatctaa ttatggatct attgattgtt ttaacttacg tggcgctggc gtgggcggtc
     6181 tttaaaatct tccgcattcc ggtaaatcag tggacgctgg cgacggcggc gctgggaggc
     6241 gtgtttctgg tgagtggttt gattttgttg atgaactaca accaccctta cacttttacc
     6301 gcgcaaaagg cagtgatagc gatccctatc acgccacagg tgacgggaat tgttactgaa
     6361 gtcactgaca agaataatca gcttattcaa aagggcgagg tgctttttaa gctcgacccg
     6421 gttcgttacc aggcgcgagt tgacagactt caggctgacc tgatgacggc gacgcataat
     6481 ataaagacgc tgcgtgcgca gctcactgaa gcgcaggcca acaccaccca ggtttcagcg
     6541 gagcgcgacc gtctgtttaa aaattatcaa cgttacttga aaggcagcca ggcggcggtg
     6601 aatccgttct cggaacgtga catcgacgat gcgcggcaaa atttcctcgc gcaggatgcg
     6661 ctggtgaaag gctcggtggc ggagcaggcg cagatccaga gccagctcga cagtatggtt
     6721 aacggcgagc aatcgcagat tgtgagctta agagcgcaac ttactgaagc aaaatataac
     6781 cttgagcaga ctgtcattcg cgcgccgagc aatggctacg ttactcaggt actgatccgc
     6841 ccaggtacat acgcagctgc cttgccgctg cgtccggtga tggtcttcat ccccgagcaa
     6901 aaacggcaaa ttgtcgccca atttcggcaa aactcgctgt tacgtctgaa acccggcgat
     6961 gatgcggaag tggtgtttaa cgcgctacct gggcaggtgt ttcacggcaa actgactagt
     7021 attttacctg tcgtgccagg cggttcttat caggcgcagg ggggattgca atcattaacg
     7081 gtcgtgcccg gcacggacgg tgtgcaggga accattgaac tggaccctaa cgatgatatc
     7141 gatgccttac ccgacggcat ctacgcccag gtggcggttt actccgacca tttcagccat
     7201 gtttcggtga tgcggaaagt gctgctaaga atgaccagct ggatgcatta tctttatttg
     7261 gatcattgag ggggaggggg gagattatgg aactttgctc cttgtaagga ctaattattt
     7321 ttgcatatta cttcattagc tgcgatgatt tttctttaat attcattatg ttaataagtt
     7381 ctggatgagt gtgctctcat tggatttttt atccgtcttg ttctgccgca ggatgagact
     7441 atacatcgtc gagatcgcaa tgatgatatg agttgttcct cctgcgacgg ctctaatcaa
     7501 aaaagagcag gagtgctttt ccatctattg cgatgatggc tttattatct gaaggatgac
     7561 agtcacattt aaaaaatatt taatctatag atcacaatgt agggtcatgg aatatatgta
     7621 tacaactatt ttcttcttca cttttaatta tcgtattcat tataaaacta agttaaaaaa
     7681 actcctggag agtgagttat taatatattt ttaaataaaa ttaagttatc attcatcgat
     7741 gcattttata gaatcatcaa tggccataat agtactatta actctcaatt ttatattttt
     7801 atcatcacta caaatattaa ctgaatttat atcaatgatt tttttattct tatcttttat
     7861 tttatttact gtttcaatgc aatcagcggc aagttggagt ggatttagat ttttcagata
     7921 tggtcttatg atctttccct tacttaataa atagcatgta taggattcgg aaagtccagc
     7981 atctattttg tacctcatta tattagataa ggatgtgaga aattccttgt tatcattcgc
     8041 agccatatat gccagtccga gttcagcctc tgcggcctta caggcaaaat agcttagtga
     8101 acacgctttt cgttcctctt tagtactggc tgatattagt gcccataata ttgctttgtc
     8161 tgccaaatct aactctctct gaaattgtct tgcagtaact gcactcgcag aaatagagaa
     8221 aaaaatacaa ttgttaataa ccttgccata tttttttagt ccgtaactgt taatgtgcta
     8281 tctggctctg aaaatattaa ctcatttaat ttttgcatgt cattagataa accagttata
     8341 caaccctcgg aacagaatcg aggtcctaaa gacggaccaa aagcgtttaa acaactatgt
     8401 attgaaaatc cattgcgatt ataagttcct gtattaactg acggtactaa tcgtatgccg
     8461 tcaggttttc tattgcttgc tcccgggtca ttaacattcc aactccatag gccttgaggt
     8521 attggccatc tatttataaa tgtgtacaac ggggattatt tttacattgc atattattac
     8581 cagaagcgac tggaatacta agcacatcat aaaaattatc atcacatggt atatctgaaa
     8641 cacacgaaag catacctaaa gttatgctgt ataaacaggt ggctaatccc aaggggatcg
     8701 attccagaaa tcgggttcaa cggatactga taaaaattcc acctaccttc cagcccaatc
     8761 ggagcctgag tgttataccg cccctgctgc ggttaatgtt accgataata gttatagtac
     8821 agccctgatt catcatcata ctactgctgc ggcagtctga tgaactattg cttttacgga
     8881 ttctccttat tcttccttct atccattcgc tttagctttt tgagctcttg aagtttgctc
     8941 tttgcatcaa tattaccgtt atttacagcg aattccatcc aataaatagc tctattcaaa
     9001 ttataatatt ctgataatgt tggatttgta tctgataaaa agaccccata attaaactgc
     9061 gctgtaacat tcccctgaga tgctgatctt tccaagaatc gcaattgttt atcaatatta
     9121 tttttagtaa agcagtaata ttgatatagt cgaaatgatg cctctgaatc accatgttgt
     9181 gatttatact tcagtttcat cagcttttct tcacttaaat cataggtcat tgctgtagat
     9241 cccatcacac tttcgttttc ttttattttc acatcagcac catgcaattg atcaataaga
     9301 gaaaaataaa aaaatagtaa caagcatgct ttcatacatc tacaacctat cttatatcac
     9361 tgggtttttc tggcgtacct tgcatattag aaatggggtg cccagatggc ccatatgtta
     9421 tccaattacc aaggtctttt gttgttatag ccattagatc cttatttgaa ttaaggttcg
     9481 ttggtgctgt tagcactgta tccattttta acttaccatt agttcctcgc ccccaccacg
     9541 tccatagcgt gtcaggtcct attacatttg tatgtaactc tttagctaat tggctagcaa
     9601 atgaattttg tcctttactt gtattacaag aaaataacca aactgtcatc ccatctttat
     9661 aattcccatc aaatttaatt agatatgcta gatctttagc tgtcatgata ctgcgcgttg
     9721 cggattcaat agatgtgggg gtaccatgcc ccccgattgt gaaaacgcct gggatattaa
     9781 tctcatcagc tacagaatgg ataagatcac tttcggggta taaatttata tcaaccaaac
     9841 cttgcggatc tacatttatg accggattca acggatactg ataaaaattc catcccccct
     9901 tcagcccaat cggatcctga gtgatatacc gcccctgcag cgggtcataa tagcggtggc
     9961 ggttgtaata caggccggac tcctcatcat actgctgacc cggcaggcga atgagctgct
    10021 gcagatgatg cgggttctca tcactcagca ggttgctcca ttcatcatat tctgcgcacc
    10081 acgctgttgc cccttccgtg ctgatgagcg ccagcggcag gccgcgatgg tcgcagtggt
    10141 acaggtggat ttttcgcgcc ggcgtgta
//
LOCUS       DADMJB010000152        10146 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.154, whole genome shotgun sequence.
ACCESSION   DADMJB010000152 DADMJB010000000
VERSION     DADMJB010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10146)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10146)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10146
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.154"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..236
                     /locus_tag="JN078_003345"
     CDS             <1..236
                     /locus_tag="JN078_003345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY9042432.1"
                     /translation="TLVEEDKALLIGNGLKLRLLDENASPYTFNKYAEYADFTSDMLV
                     YEKTYTAELSSIAGTPIEAGPFDTVVLFKINYN"
     gene            343..1434
                     /locus_tag="JN078_003346"
     CDS             343..1434
                     /locus_tag="JN078_003346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706518.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB family transcriptional regulator"
                     /protein_id="HAY9042433.1"
                     /translation="MLYRYTKEKIMRERRMPVLQWGMLCVLSLLLSIGFLAVHLPAAL
                     LLGPMIAGIIFSMRGITLQLPRSAFLAAQAILGCMIAQNLTGSILTTLAANWPIVLAI
                     LLVTLLSSAIVGWLLVRYSSLPGNTGAWGSSPGGAAAMVAMAQDYGADIRLVAFMQYL
                     RVLFVAGAAVLVTCMMLGDNAEAVNQQIVWFPPVSINLLLTILLAVVAGTAGCMLRLP
                     SGTMLIPMLAGAVLQSGQLITIELPEWLLAMAYMAIGWRIGLGFDKQILLRALRPLPQ
                     ILLSIFALLAICAGMAWGLTRFMHIDFMTAYLATSPDGLDTVAVIAAGSNADMALIMA
                     MQTLRLFSILLTGPAIARFISTYAPKRSA"
     gene            complement(1431..2222)
                     /gene="nei"
                     /locus_tag="JN078_003347"
     CDS             complement(1431..2222)
                     /gene="nei"
                     /locus_tag="JN078_003347"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease VIII"
                     /protein_id="HAY9042434.1"
                     /translation="MPEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQH
                     VTHVGTRGKALLTHFSNDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKTIL
                     LYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLD
                     QAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDE
                     NKHHGALFRFKVFHRDGELCERCGGIIEKTTLSSRPFYWCPGCQH"
     gene            complement(2258..2992)
                     /gene="pxpA"
                     /locus_tag="JN078_003348"
     CDS             complement(2258..2992)
                     /gene="pxpA"
                     /locus_tag="JN078_003348"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HAY9042435.1"
                     /translation="MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQTMQACV
                     REAIKNGVAIGAHPSFPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQGGVMRH
                     VKPHGMLYNQAAKEAQLADAIARAVYACDPALVLVGLAGSELIRAGKQYGLTTREEVF
                     ADRGYQADGSLVPRSQPGALIENEEQALAQTLEMVQHGRVKSITGEWATVTAQTVCLH
                     GDGEHALAFARRLRSTFAEKEIVVAA"
     gene            complement(2982..3914)
                     /gene="pxpC"
                     /locus_tag="JN078_003349"
     CDS             complement(2982..3914)
                     /gene="pxpC"
                     /locus_tag="JN078_003349"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpC"
                     /protein_id="HAY9042436.1"
                     /translation="MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLV
                     GNDANAPALEITLGQLTVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTL
                     KRPQHGMRSYLAVAGGIDVPPVMGSCSTDLNVGIGGLEGRLLKDGDRLPIGKSKRDFM
                     EAQGVKQLLWGNRIRALPGPEYHEFDRASQDAFWRSPWQLSPQSNRMGYRLQGQILKR
                     TTDRELLSHGLLPGVVQVPHNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQ
                     PIHFVQCSLEEALKARQDQQRYFEQLAWRLHNEN"
     gene            complement(3908..4564)
                     /gene="pxpB"
                     /locus_tag="JN078_003350"
     CDS             complement(3908..4564)
                     /gene="pxpB"
                     /locus_tag="JN078_003350"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HAY9042437.1"
                     /translation="MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVV
                     EAIPGMNNITVILRNPESLALDAIELLQRWWEESEALEPESRFIEIPVVYGGAGGPDL
                     AVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPA
                     GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC
                     "
     gene            complement(4587..5330)
                     /gene="ybgI"
                     /locus_tag="JN078_003351"
     CDS             complement(4587..5330)
                     /gene="ybgI"
                     /locus_tag="JN078_003351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000798886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radiation resistance protein YbgI"
                     /protein_id="HAY9042438.1"
                     /translation="MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTA
                     SQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDA
                     HPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDT
                     GPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHAT
                     ERGGIRALSEWLNENTDLDVTFIDIPNPA"
     gene            5601..7082
                     /gene="dtpD"
                     /locus_tag="JN078_003352"
     CDS             5601..7082
                     /gene="dtpD"
                     /locus_tag="JN078_003352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide permease DtpD"
                     /protein_id="HAY9042439.1"
                     /translation="MNKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYND
                     THAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSF
                     LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGSFSLMYAAGNVGSIIAPIACGY
                     AQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLV
                     LLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFF
                     SMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKE
                     SVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAEL
                     FIDPVAMSQITRIEIPGVTGVLTGIYMLLSGTIANYLAGVIADQTSQASFDASGAINY
                     SINAYIEVFDQITWGALACVGLVLMIWLYQALKFRNRALALES"
     gene            complement(7124..8542)
                     /gene="phrB"
                     /locus_tag="JN078_003353"
     CDS             complement(7124..8542)
                     /gene="phrB"
                     /locus_tag="JN078_003353"
                     /EC_number="4.1.99.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HAY9042440.1"
                     /translation="MTTHLVWFRQDLRLHDNLALAAACSNSSARVLALYIATPRQWAT
                     HNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFY
                     NYQYEVNERARDVEVERALRNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLK
                     RLREGMPECVAAPKVRSSGSIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQN
                     GAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLSEL
                     IWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL
                     NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD
                     AAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQP
                     IVDHKEARLRTLAAYEEARKGA"
     gene            complement(8539..9048)
                     /locus_tag="JN078_003354"
     CDS             complement(8539..9048)
                     /locus_tag="JN078_003354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbgA family protein"
                     /protein_id="HAY9042441.1"
                     /translation="MNLQRFDDSTLIRIFALHELHRLKEHGLTRGALLDYHSRYKLVF
                     LAHSQPEYRKLGPFVADIHQWQNLDDYYNQYRQRVVVLLSHPANPRDHTNVLMHVQGY
                     FRPHIDSTERQQLAALIDSYRRGEQPLLAPLMRIKHYMALYPDAWLSGQRYFELWPRV
                     INLRHSGVL"
     gene            complement(9333..9719)
                     /locus_tag="JN078_003355"
     CDS             complement(9333..9719)
                     /locus_tag="JN078_003355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042442.1"
                     /translation="MWNDIFTKLSIAILLAFSAYVHAETSAPIFFEDVGSIDSWFSIK
                     YQKYENVKDEQYPEILIYYGVKGSGINRVDGWFFSCAKAGRTCSLIFMADFGESRYFK
                     PAKIAMNKNNLIIRTSDVEIAFKITK"
     gene            complement(9692..>10146)
                     /locus_tag="JN078_003356"
     CDS             complement(9692..>10146)
                     /locus_tag="JN078_003356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000015366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HAY9042443.1"
                     /translation="LGLIDKPAPVFNRDLNSDPYYLAVNNCYSYALNRYGNPGSRIFG
                     GGGLQPGELSGKEFSKLTCGSIFEASKNDGAKDLDNGSCPSGYHKAQLFIRPHNFIGM
                     GGDYHWYRQDANGEWSDKQGVGAIRFRGKDPFPPIDYPEKCGTIFLPN"
BASE COUNT         2367 a         2753 c         2437 g         2589 t
ORIGIN      
        1 aaacgttggt tgaagaagat aaagcattgt tgattggtaa tggtctgaag ctacgtttgc
       61 tggatgaaaa cgcctcgcct tataccttca ataaatatgc tgaatacgcc gatttcacca
      121 gcgacatgtt ggtctacgaa aaaacctata cagctgaact ttcgtccatt gcaggtaccc
      181 ccatcgaggc tgggcccttc gatacagtgg tgctttttaa aattaactat aactgatttg
      241 ccatgatgcc ctttgcagcc ggaaagggca tctctttcag aaaattgctg attttcctct
      301 tttccttgat tactgttatt ttttcctggc ccggctttct ttatgctgta tcgatacacc
      361 aaagagaaaa taatgaggga gcgaaggatg ccagttttgc agtggggaat gttatgtgtg
      421 ctatcacttc tcctttctat tggtttcctc gcggtacatc tcccggcggc gctattactt
      481 gggccgatga tcgccgggat catcttcagt atgcgcggaa ttactctgca acttccccgc
      541 tccgcttttc tcgccgcgca ggccattctt ggctgcatga ttgcgcaaaa cctcactggt
      601 tcgattctca ccacgctggc cgccaactgg ccgatcgtgc ttgctatttt actggtgacg
      661 ctgctttcca gcgccatcgt gggttggtta ttggtgcgct atagctcact gcctggaaat
      721 accggtgcct ggggttcttc tccaggcggc gcagcggcaa tggtcgctat ggcgcaagat
      781 tacggcgcag atattcgcct ggtggcgttt atgcaatatc tgcgagtgct gttcgtcgcg
      841 ggggccgctg ttctggtcac ctgcatgatg ctgggtgata acgctgaagc ggttaaccag
      901 caaatcgtct ggttcccgcc agtgagcatt aatctcctgc ttacgatttt gctcgcagtc
      961 gttgccggta cggcgggatg catgctgcgt cttccttccg gcacgatgct catcccgatg
     1021 ctggcgggcg cagtgctcca gtctggtcag ctcatcacca tcgaactacc ggaatggctg
     1081 ctggcgatgg cgtatatggc aattggctgg cggattggtc ttggtttcga taaacaaatc
     1141 ttactgcggg cactacgccc actaccgcaa atcctgctgt cgatttttgc tctgctggct
     1201 atttgtgcag gtatggcgtg gggactgacc cggtttatgc atattgattt tatgactgcc
     1261 tacctcgcca ccagtcccga cgggcttgat accgtggcgg tcatcgccgc agggagcaat
     1321 gccgatatgg cgcttattat ggcgatgcaa accctgcgcc tgttcagtat tttgctgacg
     1381 gggccagcca ttgcgcggtt tatttcaacc tatgcgccga agcggtcggc ctagtgctgg
     1441 cagcctggac accagtaaaa cgggcgcgag gacaacgtgg ttttctcaat gatgccgcca
     1501 cagcgttcgc acagttcgcc atcacgatga aaaaccttaa agcgaaacag cgccccatga
     1561 tgcttattct catccacctg cccccgcgta gcgtaagaaa accgaggaat ctccagtaac
     1621 gcgtgtgcga gtgcatccag ttgcgccgca ttgagatctt tcgctttatg atttccagtc
     1681 aacccaacct gccagaggat ctccacccgc aaataattgc caagcccagc cagaaacgcc
     1741 tgatcgagca gtaatcctgc aaactgacgg ttacgaaagc gcggtgacaa taaccgttcc
     1801 tttaccacct ccggcgtcag attcggatcc agcacatcgg gaccaacgcg ttgtaaaaac
     1861 ggatgcgtgg tcagttgttc cggcctcaac atctcaatat ccgaggcgct ataaagcaga
     1921 atggttttgt cagccgtttg cagttttacc cgcaatactc gcgtggtctg cggctcttcg
     1981 ccggtatcaa ccacgcgcca gacgccgtaa agctgattat ggctgtagag cgttaagtcg
     2041 ttggaaaaat gagttaacaa cgccttacca cgcgttccca catgggtaac gtgttgaccg
     2101 ataagttgtg attgataagt ttttaactgc gggaaggcaa accagacatc agttagtggt
     2161 ttgcctttga tcgccgcctc caggttatcc gctgcacggc ggatctccgg gccttcaggc
     2221 atggtgatat ccttttttca ttctttatta atcggggtta tgctgcgaca acaatctcct
     2281 tttcggcaaa tgtagagcgt agtcggcggg cgaacgccag tgcgtgctcg ccgtcgccat
     2341 gcaggcagac tgtttgcgcc gtgaccgttg cccattcgcc ggtgatactt ttgactctgc
     2401 cgtgttgcac catctctagc gtttgcgcca gcgcctgttc ttcgttttca atcaacgcgc
     2461 ctggctgact tcgcggcacc agcgagccgt cagcctgata accgcgatcg gcaaacactt
     2521 cctcgcgcgt tgtcaggcca tattgcttgc ctgcacgaat cagctcgctt cctgccagcc
     2581 caacgagaac caatgctgga tcgcaagcgt ataccgctct ggcgatggcg tctgccagtt
     2641 gtgcttcttt cgccgcctgg ttgtacaaca tgccgtgcgg tttgacatga cgcattacgc
     2701 cgccttgcgc acgggcaatc gttgccagcg cgccaatttg atacagcgtc tgggcgtaaa
     2761 cggtttctgg cggcagctgc atggcgctgc gaccaaaatt ttccctgtcg ggaaaactcg
     2821 ggtgagcgcc aatcgcgaca ccatttttta ttgcttcacg cacgcaagcc tgcatggttt
     2881 gggcatcgcc tgcatgaaat ccacaagcaa tattggcaga ggaaaccagc gttaatagct
     2941 ctgcgtcgct ggcgcagcct tcgcccagat cggcgttcag gtcaattttc attgtgtagc
     3001 cgccacgcta attgttcgaa ataacgttgt tgatcttgcc gcgctttcag tgcctcttcc
     3061 agtgaacact ggacaaaatg aatcggctga ccgagcggaa tttgcgccag atggtacata
     3121 tcagcctcaa tgatacaggc aatacgcggg taaccaccgg tggtctgtgc gtcgttcatc
     3181 aacacaatcg gctgcccgtt atgcggcacc tgcaccacac ccggtaacaa accgtgagat
     3241 aacagttcgc gatcggtggt gcgttttaaa atttgcccct gtaagcgata gcccatgcgg
     3301 ttactttgcg ggctaagctg ccagggcgaa cgccagaatg catcctgcga ggcgcgatcg
     3361 aactcatgat attccggccc cggcaaggcg cgaatgcggt tgccccacag cagctgttta
     3421 acgccctgcg cttccataaa atcacgcttc gatttgccaa tcgggagtcg gtcaccatcc
     3481 ttcagtaaac ggccttccag cccgccaatc cccacgttga gatcggtgct gcatgacccc
     3541 attaccggcg gaacatcaat accacccgcg accgccagat aactgcgcat gccgtgctgc
     3601 gggcgtttaa gcgttaaacg ctggcctgct ttcatcggca agcgccagcc ggtccagacg
     3661 gcgttatcat ccagccgcgc ttcgcaaccg gcacccgtca gagcaaacca cccatcagtt
     3721 tcgaactcaa ccgttaactg accgagcgtg atctccagcg cgggggcatt ggcgtcatta
     3781 cccaccagca ggttagcaat gcgtaacgca ggcatatcca gtgcgccgca gtggctgata
     3841 cccgactggc gaaaaccgtg acgaccgcca tcctgcacag tggtatacat gcccgcacga
     3901 ataatcttca gcatactccc tccttctgcg gtacaaagcg cacgctgtct cccggacgta
     3961 ataagatggg ttcgtcacgc gccggatcaa acaggctgag tgaggtatga ccaatcaact
     4021 gccagccacc cggcgttgcc agcggataaa caccagtctg cggcccgccg atcccgacag
     4081 aacctgccgg aacgagcaag cgcggttcag cgcgccgtgg cgtgtgtagt tgttccggca
     4141 aactcccgag atacgggaag cccggttgaa aacctaaaaa ccagaccacg tattccacgg
     4201 aggagtgcaa ttcaacaacc tgtttttcgc tcaacccgca atgcgccgcg accaccgcca
     4261 aatccggtcc gcctgcacca ccgtaaacca ccggaatttc aataaagcga gactcaggtt
     4321 ccagggcctc gctctcctcc caccagcgtt gcaaaagctc tatggcatcc agcgccagcg
     4381 actcaggatt acgcaaaatc accgtgatat tgttcatgcc gggaatggct tcaaccacat
     4441 tcggcatatc caccagacgc tgcgccagtc gccagatccg tttctggcta gccagcgtca
     4501 ccggcggttc cagttccagc actaccgccg tttcacctat cagataacaa cgcgctcgtt
     4561 gcactttcga tccctctgat tattcgttat gcaggattag gaatatcaat aaaggtcaca
     4621 tcaagatcgg tattttcatt cagccactcg ctcaatgcgc gaataccacc acgttcagtg
     4681 gcatggtgac ctgcagcata aaaatgcaat ccctgctcgc gggctgaatg aatggtctgt
     4741 tcagaaactt cgccagtaat aaaagcatcc acgccaaaac gcgcggcgct atcgataaaa
     4801 ctttgcccgc cgcccgtgca ccaggcgacg cgctggacca cctcaggtcc ggtatcgcca
     4861 caccataacg gcttacgtcc cagacgcgct tcaatccagg aggctagttc cagtcccggc
     4921 acaggcatgg tcagctctcc ccacggcacc aacggctcaa tttcgcccat gaccgtgatc
     4981 cccagtaacg ccgccagctg tgcgttattg cccagctcag gatgtgcgtc aagcggcaaa
     5041 tgccagccat acaggttgat atcattcgcc agcaacgttt ttaaacggtt acgcttcatt
     5101 ccgcgaatga ccggagactc tcctttccag aagtagccat gatgcacaat gaccgcatcc
     5161 gcgcccagac gcactgcctc atcgagcaaa gcctggctgg cggtgacacc ggtaacaatt
     5221 ttttgcaccg tctctttgcc ttccacctgc aaaccattcg gcgcgtaatc actaatcgcc
     5281 gcgctgttca gtttttcgtt aatcagttgt tccagttcgg tgtttttcat cttcgcgcct
     5341 tccgtattct gatagctaca ccgttaacat agcgttacct cgcctgttcg tcgatagcca
     5401 atcttttgac atattaagaa acaaacccga cgccaaaaga cgcaaattgt ttatatcatc
     5461 acgcttcagc taatgtatat ttatgcaatc agacagcata ttgcataaat aatcagatct
     5521 gtatcaaagt tttaacttta aggaaacaca agcacgccgc gcaactatta cgtgacgttg
     5581 ccgtcaattg tggaattatt atgaataaac acgcatcaca gccgcgcgct atttactatg
     5641 tcgttgcgct gcaaatctgg gaatatttta gcttttacgg catgcgtgcc ctgctgattc
     5701 tctatctcac caatcaacta aaatacaacg atactcacgc ctacgagtta tttagcgcct
     5761 actgttcgct ggtgtatgtc acgccaatcc tcggtggctt tttggcggat aaagttctcg
     5821 gcaatcgcat ggcggtgatg ctgggggcgt tattgatggc gatcggtcat gtggtgttgg
     5881 gtgccagtga gatccatccg tcattcctct atctgtccct ggcgataatt gtttgtggct
     5941 atggtctgtt taaatccaat gtcagttgcc tgctcggcga gctgtatgag ccaaccgatc
     6001 cgcgtcgtga tggcagtttc tcgctgatgt atgcagcggg taacgtgggg tctattatcg
     6061 cacctattgc ctgtggctac gcccaggaag agtacagctg ggcgatgggc tttggcctgg
     6121 cggcggtggg tatgatcgcg ggtctggtca ttttcttatg tggcaatcgt catttcacac
     6181 atacccgcgg cgttaataaa aaagtactgc gtgcgacaaa ctttctcctg cctaactggg
     6241 gatggctgct ggttctgctg gtggcaacgc ctgcgctgat taccgtattg ttctggaaag
     6301 agtggtcggt atacgcctta attgtcgcga ctattattgg cctgggtgta ctggcaaaaa
     6361 tttatcgcaa agcagaaaac cagaaacagc gtaaggagct ggggctgatt gtgacgctca
     6421 ccttcttcag tatgttgttc tgggccttcg cacaacaggg cggcagctcg attagccttt
     6481 atatcgaccg cttcgttaac cgcgatatgt ttggttatac cgttccgact gctatgttcc
     6541 agtcgattaa tgccttcgca gttatgctgt gcggtgtgtt cctggcgtgg gtggttaaag
     6601 aaagcgtcgc aggtaatcgt accgtgcgca tctggggaaa atttgctctt ggtctcggcc
     6661 tgatgagcgc cgggttctgc attctgacct taagcgcccg ctggtccgca atgtatggtc
     6721 actcttctct gccactgatg gtattaggcc tggcggtgat gggctttgcg gaactgttta
     6781 tcgacccggt tgccatgtcg caaattacgc gcattgaaat ccccggtgtg accggcgtat
     6841 taaccggcat ttatatgctg ctttccggca cgattgcgaa ctatctcgcg ggcgtgattg
     6901 ccgatcagac atcgcaggct tcgtttgatg cttccggggc gatcaactac tccatcaatg
     6961 catatattga agtatttgat caaattacct ggggcgcact ggcgtgtgta ggactggtac
     7021 tgatgatttg gctgtatcag gcgctgaaat tcagaaaccg cgcgctggcg ctggagtcat
     7081 aataggccag caccatacct gataaaacgc tcgctgcgtt ttatcaggct cctttcctcg
     7141 cttcttcgta cgctgccagc gttcgcagcc ttgcctcttt gtgatcaact atcggttgcg
     7201 gataatccag catcacacct gctttctgcg cccacttcca cggctcatgc accgctttcc
     7261 ctggtacatc gcgcagctcc ggtaaccatc gacgaataaa ctcgccctca cggtcaaatt
     7321 tctcgccctg ggttgtcggg ttgaaaatac gaaaatacgg cgctgcatcg gttccggttg
     7381 aagcggccca ctgccagcca ccgttattgg ctgccaaatc accatcaatc agctgcgaca
     7441 tgaaatatcg ctcgccttcg cgccagtcga tcaacaaatc tttcaccaga aaactggctg
     7501 taatcatccg tagccggtta tgcatccagc cagtgctgtt aagctgacgc atggcagcat
     7561 cgacaatcgg gtatcccgtt ttgccttcct gccaggcctg taaatgtgcg ggattgctct
     7621 gccactgcac acgatccgtc caggcaataa acggacaatg tttacacaac gaggggtaat
     7681 acgtcatcag atgacggtag aactcgcgcc agatcagctc actaagccag acactaccgg
     7741 ccccaccgtc cagcgcctgc ggctgttccg ccaacaagcg atgcaaacac tggcgaggcg
     7801 ataacccgcc cgttgccagg ctggcggaca aacgactggt gccttccact gccggaaaat
     7861 ctcgttgttg ctcatattct ccggcaccgt tctggcaaaa ctggcgtaat tgcgcaatcg
     7921 ccgctttttc ttccaccggg aaatgcgcag tatcgaaaga ctgacgagga taattcagcg
     7981 taatggatgg cgagggctct atcgatccgc tactacgaac ttttggcgca gcgacgcact
     8041 ccggcatccc ttcccgcagc cgtttcagcc aggcattctt aaaaggcgta aagactttgt
     8101 acatctcgtg attaccggtc atcaccgcgc caggcggcag gatcacgctg tcatcaaatc
     8161 cttcacacac cacgttacgc agcgctcttt caacttccac atcccgcgcc cgctcattca
     8221 cttcatactg atagttataa aacaggtggg taacgctgtt ttccgcgcac acctgtttaa
     8281 ctatttcgac actggcgaca aagtcatcca cttcacggaa caataaagga ataccttttt
     8341 ccgcaagcgc tatttgtagc ccattcagtt gagcattgat aagttcagcc tgacgcggcg
     8401 acatgttatg cgtcgcccac tggcgtggtg tagcgatata caacgccagc acgcgtgcag
     8461 acgaattgct gcaggcggca gccagtgcga gattatcgtg caaacgtaaa tcctggcgaa
     8521 accagaccag atgggtagtc ataaaactcc tgaatggcgc aagttaatca cacgcggcca
     8581 aagttcgaaa taacgctgcc ctgaaagcca ggcgtcagga taaagcgcca tatagtgttt
     8641 gatacgcatc agcggcgcaa gaagtggttg ctcgccacgg cgataactgt cgataagcgc
     8701 agccagctgc tggcgttctg tggaatcaat atgcgggcga aaataaccct gaacgtgcat
     8761 caaaacattg gtgtgatcgc gcgggttggc ggggtgagaa agcaaaacaa ctacgcgttg
     8821 gcggtactgg ttgtaatagt catccagatt ttgccactgg tgaatatcag ccacgaacgg
     8881 gccaagtttg cggtactccg gctgagaatg cgccagaaag acgagtttat agcggctgtg
     8941 ataatcgaga agcgccccgc gcgttaagcc atgttctttc agtcgatgta actcatgaag
     9001 ggcaaagata cggattaggg tgctgtcatc aaatcgttgt agattcatta ctgctcctga
     9061 acggtataaa ggagtaagtg tagacgatgg taaatgaatt ttatggggca gagtttttgc
     9121 ggggaagtat tttgttggta aaaatattat caacttcatc tgagcgagaa ttattctact
     9181 atttcccgag ctgcattcat tttttgtatt ttttattttt agaaaataac agttctcaaa
     9241 gcttaattac ctcactatta attgtatttc aaactaacaa tcgcactcca ttttctctct
     9301 ttaaaaaaca taaacattgt taaaacaaat atttatttcg ttatcttaaa tgctatttct
     9361 acatcactcg tccttataat caaattattc ttattcatag ctatttttgc aggtttaaaa
     9421 tagcggcttt caccaaagtc agccatgaaa attagactac aagttctccc agcctttgca
     9481 catgagaaaa accacccatc aactctattt attcctgaac ctttaacacc ataataaatc
     9541 agaatttctg ggtattgttc atccttcacg ttttcatatt tttggtattt aattgaaaac
     9601 caagagtcta tactgccaac atcttcaaaa aatattggag ctgatgtttc cgcatgaaca
     9661 tatgcagaaa atgctaacaa aatggcaata cttagtttgg taaaaatatc gttccacact
     9721 tttcaggata atctattggg gggaagggat cttttcctct aaatctaatt gctcccactc
     9781 cttgtttgtc agaccattcg ccatttgcat cctgacgata ccagtgataa tcccctccca
     9841 tgcctataaa attgtgagga cgaataaaca attgagcttt atggtaacca gatggacaac
     9901 tcccattatc taaatccttg gcaccatcat tttttgacgc ttcaaaaata ctaccgcaag
     9961 tgagtttaga aaactctttt ccagataatt ctccaggttg taatcctccg ccgccaaaaa
    10021 tcctactccc agggtttcca tacctattta gagcatatga ataacaatta tttacggcaa
    10081 gataatacgg atctgaattt aggtctcgat tgaatactgg agcaggttta tcaattaagc
    10141 ccagcg
//
LOCUS       DADMJB010000153        10121 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.155, whole genome shotgun sequence.
ACCESSION   DADMJB010000153 DADMJB010000000
VERSION     DADMJB010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10121)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10121)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10121
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.155"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..275
                     /locus_tag="JN078_003357"
     CDS             <1..275
                     /locus_tag="JN078_003357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416114.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acid shock protein"
                     /protein_id="HAY9042444.1"
                     /translation="ALVVAAAMGLSSAAFAAETATTTKAAPAKTTHHKKQHKAAPAQK
                     AQAAKKHHKNTKAEQKAPEQKAQAAKKHAGKHSHQQPAKPAAQPAA"
     gene            368..451
                     /locus_tag="JN078_003358"
     CDS             368..451
                     /locus_tag="JN078_003358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042445.1"
                     /translation="MVGRYRFEFILIILILCALIAARFYLS"
     gene            551..1372
                     /locus_tag="JN078_003359"
     CDS             551..1372
                     /locus_tag="JN078_003359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HAY9042446.1"
                     /translation="MRTTIAVVLGAISLTSAFVFADKPDVAKSANDEVSTLFFGHDDR
                     VPVNDTAQSPWDAVGQLETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVVLRF
                     VSNKGLWRYEIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITP
                     LPLFEGDKAALTAALKSAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDT
                     LPGDSGSPLMLHTNDGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLDQLSQK"
     gene            complement(1411..1740)
                     /gene="mdtI"
                     /locus_tag="JN078_003360"
     CDS             complement(1411..1740)
                     /gene="mdtI"
                     /locus_tag="JN078_003360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug/spermidine efflux SMR transporter
                     subunit MdtI"
                     /protein_id="HAY9042447.1"
                     /translation="MAQFEWVHAAWLALAIVLEIVANVFLKFSDGFRRKIFGLLSLAA
                     VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAG
                     MIMVKLA"
     gene            complement(1727..2092)
                     /gene="mdtJ"
                     /locus_tag="JN078_003361"
     CDS             complement(1727..2092)
                     /gene="mdtJ"
                     /locus_tag="JN078_003361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug/spermidine efflux SMR transporter
                     subunit MdtJ"
                     /protein_id="HAY9042448.1"
                     /translation="MYIYWILLGLAIATEITGTLSMKWASVSEGNGGFILMLVMISLS
                     YIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI
                     KSGTRKARKPELEVNHGAV"
     gene            complement(3172..3453)
                     /locus_tag="JN078_003362"
     CDS             complement(3172..3453)
                     /locus_tag="JN078_003362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042449.1"
                     /translation="MTEAEITGLIRRVAGISQQADEQATQPDSVTAENYARVVAEVMR
                     RDGIELNGVDMRNIRTRVLELLAYRRRVEMYREKEKITYHWKKPERLRR"
     gene            complement(3467..5128)
                     /locus_tag="JN078_003363"
     CDS             complement(3467..5128)
                     /locus_tag="JN078_003363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HAY9042450.1"
                     /translation="MTAWNKYAEDVKTGKIPACKRLKQAVKRYFSDLKSPLYTFDREV
                     VERFIAFSRVCPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEVPR
                     KNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRRRVNI
                     QAHKVIHPKSNSLLKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGARPE
                     GLLFAITTSGSNVVSACKQHYDYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIK
                     ANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGTTPWMGNGAWAECAGT
                     FTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKTIMLVSRHYLPEFQLQNPANKNRA
                     VYRQWAKAGWIRTTPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNATHLRTQLQGAG
                     FEVEPFPQTYLRFSPAAKSFEVFVNRRVIVHRGDPVLSWSMSNVVMQSDANANIKPNK
                     KKSPNKIDPSVAALMAFGTFQAEHEDFAFDISDSHRQKLEEFSGV"
     gene            complement(5112..5468)
                     /locus_tag="JN078_003364"
     CDS             complement(5112..5468)
                     /locus_tag="JN078_003364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase small subunit P27 family"
                     /protein_id="HAY9042451.1"
                     /translation="MARPPKAPAYLDDIAVKQWREKSRQLAERGDLTPADWSNLELYC
                     VNYSIYRKAVADLAARGFSIVNSQGGESRNPALSAKSDAERVMIKMASLLGFDPISRR
                     KNPPETEEEDELDRLE"
     gene            complement(5591..5773)
                     /locus_tag="JN078_003365"
     CDS             complement(5591..5773)
                     /locus_tag="JN078_003365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042452.1"
                     /translation="MTLMNEREQKRLIRGLIRQRDAWKTQETGHKDKASGRAERITAK
                     RLTDRDREVMECFRNR"
     gene            complement(5757..6197)
                     /locus_tag="JN078_003366"
     CDS             complement(5757..6197)
                     /locus_tag="JN078_003366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707053.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HAY9042453.1"
                     /translation="MPWQPLRRCTEPGCNRRVKSGKCEEHRRAAWRAEDARRGHRRAR
                     GYSRQWEKYRAMYLSKNPLCVRCLEKGIYTPAVVVDHIIPINGGDDVLFWPEWNHQPL
                     CQACHNQKTKWLDPATKSKRAAGGFREEEERAANRNNWMYDADE"
     gene            complement(6197..6493)
                     /locus_tag="JN078_003367"
     CDS             complement(6197..6493)
                     /locus_tag="JN078_003367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage gp6-like head-tail connector protein"
                     /protein_id="HAY9042454.1"
                     /translation="MTEELITLEEVKLHCRIDGDEEDQLISGYIAASLEACQIHIGRR
                     FDDGLEFTPAIKIGCMMFIAHLYENRQLVADNAKTRVPMTIGALWTAYRDVGVY"
     gene            complement(6490..6828)
                     /locus_tag="JN078_003368"
     CDS             complement(6490..6828)
                     /locus_tag="JN078_003368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head closure protein"
                     /protein_id="HAY9042455.1"
                     /translation="MNIGRLRDRVTIQTLKQTRDITGEILETWEDGHTLWASVNMISS
                     KEAISSGAELAIGTVRIWIRYRKDINATSRIKVNTGPLAGRVLNIIGQPLPDAARTRL
                     EILCREGAEK"
     gene            complement(6825..8036)
                     /locus_tag="JN078_003369"
     CDS             complement(6825..8036)
                     /locus_tag="JN078_003369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HAY9042456.1"
                     /translation="MWLFRRKKEQRSMTLDEFMALAGTSNTGAGEYVSSGTAESLPAV
                     MNAVTVISEAVATMPCYLYLVRNEKGKEAREWLDSHPVDHILNERPNAWQTPYQFKRM
                     MIRHCLLNGNAYAVIQWGRDGFPVALHPYPPQSVNVEQTGEHNWRYCITDAYTGNTRN
                     YLPWEVLHLRYSTDDGFMGRSPVTICRESLGLGLAQQRHGASVMRDGMMAAGVITSGE
                     WLDGVKGKQALAALERYKGARNAGKTPILEGGMSYQQLGMSNQDAEWLASRRFTIEDI
                     ARMFNVSPIFLQEYSNSTYSNFSEASRAFLTMTMRPWLANFEQQIKNALLVASPVPGI
                     RYQVEFDSADLLRATPGERFATYERGIKSGVMCPNEAREREGLSPRDGGDEFSQAWKQ
                     EVKISEGEKPE"
     gene            complement(8038..8610)
                     /locus_tag="JN078_003370"
     CDS             complement(8038..8610)
                     /locus_tag="JN078_003370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309618.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 family phage prohead protease"
                     /protein_id="HAY9042457.1"
                     /translation="MGEKIMKSMEIRSSEITTSASNTLTGYVVRWDKLSELLWGEFYE
                     KFQRGAFTEWLAVGNDVRGLYEHDHSMLLGRTRSGTLKLEEDETGLRFELTPPDTSTG
                     RDVIELVKRGDISGMSFGFRSRKDVWDTTTDPCVRTVLVAELYEITVTSVPAYPDSGV
                     ELARRSLYEQHPEKMPRADNRRWWVDLAGV"
     gene            complement(8650..9807)
                     /locus_tag="JN078_003371"
     CDS             complement(8650..9807)
                     /locus_tag="JN078_003371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HAY9042458.1"
                     /translation="MPRIIELRQQKTAIKNQMRDMLENAEKENRSLNDAEGAKFDELR
                     AKAESLDKDISRLEAIADEERSKPGKSSQTTDPAELRSYILTGETRALSTGVPADGGY
                     TVIPELNTEIMRMLADESTMRRICTVKKISSNEFKQLVSAGGVTVNHGEEGKAREQTS
                     TPQINEVSIKLYPVYAYPRTTQEIVDFSDVDILSWLTGEIGDTFTETEESDLVVGDGD
                     KKAKGFLSVPRAEKNDKERDFGTLQVIKPSESLAWTSADPLIDLKFALRKKYRKNAVW
                     VVNSTTAAKLQKVKNANGDYIWRDRLQAGDPDTLLGLPVEYLEFMPDNVIALGDFKRG
                     YYIVDHETGVRTRPDNLTEPGFIKIFTQKYLGGGVVDSNAIKILELPQDDD"
BASE COUNT         2336 a         2768 c         2430 g         2587 t
ORIGIN      
        1 tagctctggt tgttgccgct gctatgggtc tgtcttctgc cgcctttgct gcagagactg
       61 cgacgaccac caaagcagcg ccggcgaaaa cgacacatca taaaaaacag cataaagcag
      121 cacctgccca gaaagcgcag gcagctaaaa agcatcataa aaatacgaaa gctgaacaga
      181 aagcccctga acaaaaagcg caggcagcga agaaacacgc cgggaaacac agtcatcagc
      241 aaccggcaaa acctgctgca caacccgcag cgtaagtttt caacagtaat gctggcgcgc
      301 cccctcgcgc ctgaaaatta cggtgctaag cgggtaacgt ttagcaccgc ctttagcgga
      361 gggtagtatg gtgggccgtt atcgctttga gttcattctt atcatcctta ttttatgcgc
      421 actgattgcc gcccgttttt atctttcctg actgtagtta tctgatttta ctcccacttt
      481 catcccgtcc cgtctatagt atttatgagg gtttgctttt aataatcata attacccacc
      541 agagtgtgat atgcgtacaa ccattgctgt agtgttgggt gcaattagtt tgacgtctgc
      601 ttttgtgttt gcagataaac cagacgttgc caaatcggca aacgatgagg tcagcaccct
      661 gttttttggt catgatgatc gtgtgccagt gaatgacacg gcccaatcac cgtgggatgc
      721 ggttgggcaa ctggaaacgg ccagcggcaa tttatgtacg gcgacgctga ttgcacccaa
      781 tctggcatta acggcaggac actgtttatt gacacctcca aagggtaaag ccgataaagc
      841 agtggtgctg cgttttgtgt caaataaagg tctttggcgc tatgagatcc acgacataga
      901 aggccgcgtt gatccgacac tgggaaagcg gttaaaagca gatggggatg gttggattgt
      961 acctcccgca gccgcgccgt gggacttcgg attgattgtg ctacgtaatc ccccttctgg
     1021 cattacaccg ttgccgttat ttgagggaga taaagccgcg cttactgccg cattaaaatc
     1081 ggctggccgt aaagtaactc aggcgggata ccctgaagat catctcgata cgttgtacag
     1141 tcatcaaaac tgtgaagtga ctggctgggc gcaaacgtcg gtgatgtcac atcagtgcga
     1201 taccttgccg ggtgacagcg gttcgcctct gatgttgcat accaatgacg gctggcaatt
     1261 aattggggtg caaagttcgg ctcctgccgc gaaagatcgc tggcgcgccg ataaccgggc
     1321 catttctgtt accggttttc gcgacaagct ggatcaactg tcgcaaaaat aatgttcaaa
     1381 cgctgcccga ctgtgcgggc agcgtgttca tcaggcaagt ttcaccatga tcattccagc
     1441 caacagcaag accaggccaa tccagccttt acgatttaac cgttgaccaa acaagatcca
     1501 acctgcggct aacgtggcgg caataccaaa cccgccccac aatgcataag cgacagacaa
     1561 gtcgatccct ttaacggcct gagaaagcgc actaaaggca gccagcaccg ccgccaggga
     1621 gagcaagcca aatattttgc gacgaaagcc gtcagaaaat ttcaaaaaga cgttagcaac
     1681 gatttccagc acgattgcca atgccagcca ggcggcgtga acccattcaa actgcgccat
     1741 ggtttacctc cagttcaggt ttacgcgctt tacgggtacc tgattttatc aacacaatcc
     1801 cggcgaccag ggtggttaac ccggcaattt tcatcagcga taaactttcg tcgaataaca
     1861 aaacgctaaa caaggtaata aataaaatac cgataccttc ccacagcgca taagctacgc
     1921 ctaaggcgat ctttttaacg gcgaaagaga gaaatatata cgacagagaa atcatcacca
     1981 gcattaaaat aaagccgcca tttccctcac tgacgctcgc ccatttcatt gacagcgtac
     2041 cggtaatttc tgtagcaata gccaggccta ataaaatcca ataaatatac attgtccttc
     2101 tcctgcaaga gaattatttt aattttcgct taattcagcg aaattaaagt aaagtggtca
     2161 agccccgcgc atagggcaag cttaggcaga agaaaggact aaagcgcgtt gcgccagtgc
     2221 tgctcaccta cgagcaagat agtggatgag gtacaaagat gggtaaatgt tgaaaataag
     2281 gtcctgaaca aattgtccat aatattacaa ttatccgcag tgttgcttct cgtcatcgcg
     2341 gatgataatt gtcctcggta gttgaacacg cctgatttgt atcatagctt aagaattaac
     2401 tcaaaatatt ttcacttctt tacctgagcg gtttgatttt cgttatgatg acagagcgaa
     2461 aaagacatta ttattagcaa aggaagaaaa aacggggaca agcatggcaa agccgatcat
     2521 cacgctcaat ggcctaaaaa tcgtcattat gttgggaatg ctggtcatta ttctctgcgg
     2581 tatccgtttt gccgccgaga tcatcgtgcc gtttattctc gcattattta ttgctgttat
     2641 atataactta tttcacttaa cgcattgatt taattaaata atttgcacca caaaaagtgc
     2701 caaaaatcgc aaaatgacta caccagtgac tacaccgttc ggtgcactgt atgaaacaac
     2761 gtggaacaaa tagacacaag aaatatacag gcagatcatc tttccagggg gaagcgcacc
     2821 aattcatgag gggcgttgct gtcgatatgg ggatctccac ctacctggat ttttttccgg
     2881 ttaaacgtta atcaggctgg tgggctttac ctgttcggta ggagtggtca ttatgaccat
     2941 tcagacaatg accttaatca gaatttttcg ctaaaaaatg acgttagcca cgtcgtccgg
     3001 aaaacacaaa atcccgtcga tttttaatta acggttaaac cgtcttttgt cacggcgtgt
     3061 cactggctgt cactctccgt cacgattggg cgtggtgatt atcaccattc agaatctaaa
     3121 gggtgacgct tccggcctcc tcaaattgag gtttccgaaa atatcaacca gttaccgccg
     3181 caaccgctcc ggcttcttcc agtggtacgt tattttctcc ttctcccgat acatctccac
     3241 gcggcgacgg taggccagca actcaagaac tctggttcgt atgttgcgca tatccacgcc
     3301 attaagttct ataccatcac ggcgcatcac ctcagcaaca acacgcgcat aattttcggc
     3361 tgtcacgctg tccggctgcg tggcctgttc gtcagcctgc tggctgattc cggcaacgcg
     3421 gcggattaat cccgttattt cggcttctgt catgctgctg acctcattac accccgctaa
     3481 attcttccag tttctggcgg tggctgtcgc ttatatcaaa agcaaaatcc tcatgctctg
     3541 cctggaatgt accaaacgcc atcagcgccg ccacgctcgg gtctatcttg ttcggtgatt
     3601 ttttcttgtt cggcttgata ttggcgttcg cgtcactctg catcacgacg ttactcatcg
     3661 accaggacaa caccggatcg ccacgatgca caatcaccct gcggttaaca aaaacttcga
     3721 acgatttcgc cgccggactg aatctgaggt aggtttgcgg gaacggctcc acctcaaaac
     3781 ctgccccctg taattgcgtt ctgagatgcg tggcgttcca cgtatcaaag cccaccagcc
     3841 tgatattaaa tttctccgcg tcctgcatga tgtcatctct gatccggtcg taatcaatgc
     3901 agtcgccagg cgttgtgcgt atccagcctg ctttagccca ctgacgatag acagcgcggt
     3961 ttttattggc ggggttctgt agctggaact ccggcagata atgacgggaa accagcataa
     4021 tggttttacc taccggaaag gcatagcaca cgctggaaat atcgcttgtg gatgataaat
     4081 ccagccccgc gtaacactcc tggccgtgta aatcttcctc cgtgaacgtt ccggcacact
     4141 cagcccatgc gccgttaccc atccacgggg tagtcccctg acaccagata ttaaatcgct
     4201 ttgtcatcat ctccacccac tgcgacggaa taccccgcgc tttctggatg gttgaggcca
     4261 gtttttcacg atccacggaa acatcaatat tagggttcgc ttttatccac atcgccggat
     4321 catcaacctc gttttcgtcg tccagttcgt aaatcagtac aaaaattgaa tcgttgacct
     4381 cttcgccgtc caggatctgg cagcaataat catagtgctg cttacaggct gaaacgacgt
     4441 tactgcctga tgtggtaatg gcaaataaca gcccttcggg acgtgcgccc atccccagct
     4501 caagcgcaga ataaacgccg ttatcggggt gtaggtggta ttcgtccacg atggaaaggc
     4561 tggggtttgt tccctcgatg gttgccgctt ttgctgccag cggctttaac aggctgttgc
     4621 ttttcgggtg tatcacctta tgcgcctgaa tattcacccg cctgcgtaac ggtcgggata
     4681 aaaggcacat ctgacgcgca tcatcaaaga cgatccgcgc ctggtcacgg ctcaccgctg
     4741 cggtgtaaat atcctgctga ccgttctcca taatcagaaa ccagttagcc agaatcgcgg
     4801 cggtcgttga tttcgcattt ttgcgcggca cttcgataaa ggcgctcgtg tatttgcgcc
     4861 gtccggtggc cttaacctta aagccgagga tgcacgcaaa ggcgaactgc tgccacggct
     4921 ccagctcaat gggtctgcca cgcatcggtc cttttacgtg cgggcacacc ctggaaaagg
     4981 caataaaccg ctccacaacc tcacgatcga acgtgtaaag ggggctttta agatccgaaa
     5041 agtaccgttt aacggcctgt ttcagccgtt tacaggccgg aattttgccc gtttttacgt
     5101 cttctgcgta cttattccag gcggtcaagc tcgtcctctt cttctgtttc cggtggattt
     5161 ttacggcggc ttatcgggtc aaaaccaagc aaggaggcca tttttatcat cactctttca
     5221 gcgtcggatt tcgcgcttaa tgcggggttt ctgctctcgc cgccctgact gttaacaatg
     5281 ctgaacccgc gcgccgcaag gtctgcgacg gctttgcggt atatcgagta attgacgcaa
     5341 tacagttcca gattgctcca gtcggcgggg gtcaggtctc cccgttccgc aagctgccgc
     5401 gatttttccc gccactgctt cacggcgatg tcatccaggt aggcgggggc tttcggtggt
     5461 cttgccatgc ttatttttcg tcagattatt tttcaaaaaa ttcccgtgca taaaaatttg
     5521 gggaggcgtt cggtgcccgg cggggtcggg tttgtcctga aaacgccccc caccccgtca
     5581 tacagcctca tcagcgattg cggaaacatt ccataacctc gcggtcacgg tcggttaatc
     5641 gcttcgctgt gatgcgttct gcgcgtcctg acgctttatc tttatgccct gtttcctgtg
     5701 tcttccatgc gtcacgctgc cttataagtc cacggataag gcgtttttgt tcccgctcat
     5761 tcatcagcgt catacatcca gttattgcgg ttagcggccc gttcttcctc ttcacgaaat
     5821 ccacctgcgg cacgcttgct ttttgttgct ggatcaagcc acttcgtttt ctggttatga
     5881 cacgcctggc acaatggctg atggttccat tcgggccaga agagaacatc atcaccgcca
     5941 ttaatcggga taatgtgatc caccaccacg gcgggcgtat atatcccctt ctcaaggcat
     6001 cgcacgcata acgggttttt actcagatac atggcgcggt atttttccca ctgtctggag
     6061 tacccacgcg cgcggcggtg tcctcgtctg gcatcctctg cacgccatgc cgcccgcctg
     6121 tgctcctcac acttgccgga cttaacgcgc ctgttacagc ctggttctgt acatcgtctt
     6181 aatggttgcc acggcatcag tacaccccca catcacggta agccgtccag agcgcgccaa
     6241 tcgtcatggg tacgcgcgtt tttgcgttat ccgctaccag ctggcgattc tcgtacaggt
     6301 gagcgataaa catcatgcag ccaatcttta tggctggcgt gaactccagc ccgtcatcaa
     6361 agcgcctgcc tatatgtatc tggcacgcct caagcgatgc ggcaatgtat ccgctgatta
     6421 actggtcttc ctcgtcgcca tcgatgcggc aatggagttt cacttcttcc agggtgataa
     6481 gttcttctgt catttttccg cgccctcacg acaaagaatt tcaaggcgtg tcctggcggc
     6541 atccggcagc ggttgcccga tgatattcag tacacgcccc gccagcggcc ccgtattgac
     6601 ctttatccgg ctggtggcgt tgatgtcctt ccggtaccgt atccagatcc ttacggtacc
     6661 aatcgccagc tctgcacccg atgaaatggc ctccttgctg ctgatcatgt tcacgcttgc
     6721 ccagagtgtg tgaccgtcct cccacgtttc gagtatttcg ccggttatat ccctggtctg
     6781 tttcagggtc tgaatcgtta ccctgtcacg cagtcgccct atgttcattc cggtttttct
     6841 ccctcgctga tttttacttc ctgtttccat gcctggctga actcatcacc accatcacgc
     6901 ggggacagcc cttcacgttc gcgggcttcg ttcgggcaca taacgccgga tttgatgccg
     6961 cgttcatagg tggcaaagcg ttcgccaggt gtggcccgta acaggtccgc gctgtcaaac
     7021 tccacctgat accggatacc aggtacaggc gaggccacca gcagggcgtt ttttatctgc
     7081 tgctcaaagt tcgccagcca cgggcgcatt gtcatggtga gaaatgcgcg gcttgcctcg
     7141 ctgaaattgc tgtaggtgct gttgctgtat tcctgcagaa aaatcggcga gacgttgaac
     7201 attcgggcga tgtcttcaat ggtgaagcga cgggaggcca gccattcagc atcctgatta
     7261 ctcatgccca gctgctgata gctcataccc ccttcaagaa tgggcgtttt tccggcgttt
     7321 ctggctcctt tgtagcgttc cagtgcggct aatgcctgtt tgcccttcac gccgtccagc
     7381 cattcgcctg acgtgataac ccctgccgcc atcatgccat cacgcatcac gctcgcgccg
     7441 tggcgttgtt gggccagccc aagccccagc gattcgcggc agatggttac aggtgagcgc
     7501 cccataaaac cgtcatccgt ggagtaacga aggtggagaa cctcccacgg taaatagttg
     7561 cgggtgtttc cggtgtaggc gtcagtgatg cagtagcgcc agttatgctc acctgtctgc
     7621 tcaacgttca ccgactgcgg cgggtaagga tgtaaagcca ccggaaaacc atcacgcccc
     7681 cactgaatca ccgcataagc attaccgttt aacaggcagt ggcggatcat cattcgctta
     7741 aactggtagg gagtctgcca cgcgttcggg cgctcgttga ggatgtgatc gaccggatga
     7801 gaatcaagcc actcgcgggc ctccttcccc ttctcattgc gtaccaggta caggtaacac
     7861 ggcatggtag ccaccgcctc agagatgacc gtcacggcgt tcatgacggc gggcagtgat
     7921 tccgctgtcc ccgatgatac gtactcaccc gcccccgtgt tcgatgtgcc agccagcgcc
     7981 ataaattcat caagcgtcat gctgcgctgc tctttttttc ttctgaaaag ccacatatca
     8041 cacccccgct aaatccaccc accagcggcg attatccgca cgcggcattt tttctgggtg
     8101 ctgctcatac agggaacggc gggccagctc cacgccggaa tcggggtaag ccggtaccga
     8161 tgtaacggta atttcgtaca gttccgccac cagcacggtg cgcacgcatg gatctgttgt
     8221 ggtatcccat acatccttac gggagcgaaa gccaaagctc atccccgaga tgtccccacg
     8281 cttaaccagt tcgataacgt cgcgccctgt actggtatcc ggtggggtca gttcaaagcg
     8341 taaccctgtt tcgtcctctt ccagtttcag cgtgccggaa cgggtacgcc ccagcaacat
     8401 gctgtggtca tgctcataca ggccgcgaac gtcattaccc accgcaagcc attcagtaaa
     8461 cgctccccgc tggaattttt cgtaaaactc cccccatagc agctctgaaa gcttatccca
     8521 gcgaacaacg tagcctgtaa gcgtgttgct ggcgctggtg gtgatttccg atgaccggat
     8581 ttccatactc ttcataattt tttcacccat aaaacactaa aggggctttt aagccccttc
     8641 tgtatgctgt taatcgtcgt cctgtggcag ttccagaatc ttgatcgcgt tcgaatccac
     8701 cacgccaccg cctaaatatt tctgcgtgaa aattttgatg aagcccggct ctgtgaggtt
     8761 gtccggtctg gtgcgaacac ctgtttcgtg atcaacaatg tagtaaccgc gcttgaagtc
     8821 acccagggca ataacgttat caggcataaa ctccagatat tcgaccggaa ggcccagcaa
     8881 cgtatcagga tcacccgcct gtaaacggtc gcgccagatg taatcaccgt tcgcgttctt
     8941 caccttctga agttttgccg ccgtcgtgga gttaaccacc cagaccgcgt ttttgcggta
     9001 ttttttacgt aatgcaaatt tcaggtcgat cagcgggtcc gcagatgtcc acgccagaga
     9061 ttcggaaggt ttaattacct gcaacgtacc aaaatcacgc tctttgtcgt tcttctctgc
     9121 acggggtacg gataaaaaac cttttgcttt tttgtcaccg tcgcccacaa ccagatcgct
     9181 ttcttcggtt tccgtgaagg tgtcgccaat ctcacccgtc agccatgaaa ggatgtccac
     9241 atcggaaaaa tccacgattt cctgtgtggt gcgcgggtac gcatagaccg gatacagctt
     9301 aatgctcacc tcgttaatct gcggggtgct ggtctgttcg cgtgccttac cctcttcacc
     9361 gtggttaacg gtcacaccgc cagcggaaac aagctgctta aactcgttgc tgctgatttt
     9421 tttcacggta cagatgcggc gcatggtgga ctcatccgcc agcattcgca tgatttcggt
     9481 gttcagttcg gggataacgg tataaccacc atcagcggga acgcctgtac ttaatgcgcg
     9541 ggtttcacct gtcagaatgt agctgcgtag ttctgcgggg tcagtggtct ggctgctttt
     9601 acctggcttg ctgcgctctt cgtctgcaat ggcttcaagg cgggaaatgt ctttatcgag
     9661 ggattcagct ttagcgcgta attcgtcaaa ttttgcgccc tcagcatcgt taagactgcg
     9721 gttttctttt tcagcgttct ccagcatgtc gcgcatctga tttttaatgg cggttttctg
     9781 ctggcgtaat tcgattattc tcggcataaa aaaaagtcct ggggttaagt aaggaactcc
     9841 aggacgcggc aaacactcaa ccgtttttca taaggaaatc agcaatcgca ccgatcgttt
     9901 tcccgcctgg taatgaatat tggcgagcac attaacaggc gggaaagtgg ccccagcgtc
     9961 ctggcaccac gggcgagaat aatcatgatt cagttcgggt aaaatatgcc gatccgctca
    10021 gtgaacaacg tggaacaacc acgaacaaat aatttacaaa aaataacaaa aagccggatt
    10081 gctccggctg tatgtgctgt atgggtgctc agtctctgat c
//
LOCUS       DADMJB010000154        10116 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.156, whole genome shotgun sequence.
ACCESSION   DADMJB010000154 DADMJB010000000
VERSION     DADMJB010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10116)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10116)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10116
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.156"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            205..357
                     /gene="hokA"
                     /locus_tag="JN078_003372"
     CDS             205..357
                     /gene="hokA"
                     /locus_tag="JN078_003372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001135724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokA"
                     /protein_id="HAY9042459.1"
                     /translation="MPQKYGLLSLIVICFTLLFFTWMVRDSLCELHIKQGRYELAAFL
                     ACNLKE"
     gene            complement(544..756)
                     /gene="cspA"
                     /locus_tag="JN078_003373"
     CDS             complement(544..756)
                     /gene="cspA"
                     /locus_tag="JN078_003373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone/antiterminator CspA"
                     /protein_id="HAY9042460.1"
                     /translation="MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKS
                     LDEGQKVSFTIESGAKGPAAGNVTSL"
     gene            complement(1037..1327)
                     /locus_tag="JN078_003374"
     CDS             complement(1037..1327)
                     /locus_tag="JN078_003374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator"
                     /protein_id="HAY9042461.1"
                     /translation="MEYKDPMHELLSSLEQIVFKDETQKITLTHRTTSCTEIEQLRKG
                     TGLKIDDFARVLGISVAMVKEWESRRVKPSSAELKLMRLIQANPALSKQLME"
     gene            1760..2470
                     /locus_tag="JN078_003375"
     CDS             1760..2470
                     /locus_tag="JN078_003375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3053 domain-containing protein"
                     /protein_id="HAY9042462.1"
                     /translation="MATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNT
                     VMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQ
                     DYVTQSGPLREMNGSLGVLAQQLQNAKLQADAAHSALKQTDDLKPVFDQAFTKVVTTP
                     ADALQPLIPVAQTFTQQLVMVGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLP
                     AQHQAFNQAWTTAVTATQ"
     gene            complement(2520..3494)
                     /gene="ghrB"
                     /locus_tag="JN078_003376"
     CDS             complement(2520..3494)
                     /gene="ghrB"
                     /locus_tag="JN078_003376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312465.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate/hydroxypyruvate reductase GhrB"
                     /protein_id="HAY9042463.1"
                     /translation="MKPSVILYKALPDDLLQRLQEHFTVHQVANLSPQTVEQNAAIFA
                     EAEGLLGSNENVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTET
                     VADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMAL
                     AQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLF
                     GAEQFAKMKPSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLS
                     MANVVAVPHIGSATHETRYGMAACAVDNLIDALQGKVEKNCVNPHVAD"
     gene            complement(3598..4257)
                     /locus_tag="JN078_003377"
     CDS             complement(3598..4257)
                     /locus_tag="JN078_003377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family lipoprotein"
                     /protein_id="HAY9042464.1"
                     /translation="MKKRVYLIAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLDSL
                     VGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRS
                     GDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDL
                     NMRLSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSP
                     L"
     gene            4410..6743
                     /locus_tag="JN078_003378"
     CDS             4410..6743
                     /locus_tag="JN078_003378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418007.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
                     /protein_id="HAY9042465.1"
                     /translation="MANSSSRYSVLTAAHWGPMLVETDGETVFSSRGALATGMENSLQ
                     SAVRDQVHSNTRVRFPMVRKGFLASPENPQGIRGQDEFVHVSWDEALDLIHQQHKRIR
                     EAYGPASIFAGSYGWRSNGVLHKASTLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVV
                     GGSEVYQQQTSWPLVLEHSDVVVLWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKL
                     ICIDPMRSETVDFFGDKMEWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYA
                     VFASYLLGESDGIAKTAEWAAGICGVHAAKIRELAALFHQNTTMLMAGWGMQRQQLGE
                     QKHWMIVTLAAMLGQIGTPGGGFGLSYHFANGGNPTRCSAVLSSMQGSLPGGSDAVDK
                     IPVARIVEALENPGCAYQHNGMNRLFPDIRFIWWAGGANFTHHQDTNRLIRAWQKPEL
                     VVISECFWTAAAKHADIVLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDF
                     DVFAELSERWEKGGYARFTEGKSELQWLETFYNVARQRGASQQVELPPFAEFWQANQL
                     IEMPENPDSERFIRFADFCRDPQAHPLKTASGKIEIFSQRIADYAYPDCPGHPMWLEP
                     DEWQGNAEPEQLQVLSAHPAHRLHSQLNYSSLRELYAVANREPVTIHPDDALARGIQD
                     GDTVRLWNARGQILAGVVISEGIKPGVICIHEGAWPDLDLTADGICKNGAVNVLTKDL
                     PSSRLGNGCAGNTALAWLEKYNGPELTLTAFEPPASS"
     gene            complement(6712..7152)
                     /locus_tag="JN078_003379"
     CDS             complement(6712..7152)
                     /locus_tag="JN078_003379"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HAY9042466.1"
                     /translation="MIREAQRSELPAILELWLESTTWGHPFIKANYWRDCIPLVRDAY
                     LANAQNWVWEEDSKLLGFVSIMEGRFLAAMFVAPKAVRRGIGKALMQYVQQRHPHLML
                     EVYQKNQPAINFYQAQGFHIVDCAWQDETQLPTWIMSWPVVQTL"
     gene            complement(7149..7712)
                     /gene="tag"
                     /locus_tag="JN078_003380"
     CDS             complement(7149..7712)
                     /gene="tag"
                     /locus_tag="JN078_003380"
                     /EC_number="3.2.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HAY9042467.1"
                     /translation="MERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGL
                     SWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAY
                     LQMEQNGEPFADFVWSFVNHQPQVTQATTLSEIPTSTPASDALSKALKKRGFKFVGTT
                     ICYSFMQACGLVNDHVVGCCCYPGNKP"
     gene            7870..8568
                     /locus_tag="JN078_003381"
     CDS             7870..8568
                     /locus_tag="JN078_003381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709326.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HAY9042468.1"
                     /translation="MIIKKSGGRWQLSLLASVVISAFFLNTAYAWQQEYIVDTQPGHS
                     TERYTWDSDHQPDYNDILSQRIQSSQRALGLEVNLAEETPVDVTSSMSMGWNFPLYEQ
                     VTTGPVAALHYDGTTTSMYNEFGDSTTTLTDPLWHASVSSLGWRVDSRLGDLRPWAQI
                     SYNQQFGENIWKAQSGLSRMTATNQNGNWLDVTVGADMLLNQNIAAYAALTQAENTTN
                     NSDYLYTMGVSARF"
     gene            8796..9998
                     /locus_tag="JN078_003382"
     CDS             8796..9998
                     /locus_tag="JN078_003382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9042469.1"
                     /translation="MTPSNYQRTRWLTLIGTIITQFALGSVYTWSLFNGALSAKLDAP
                     VSQVAFSFGLLSLGLAISSSVAGKLQERFGVKRVTMASGILLGLGFFLTAHSDNLMML
                     WLSAGVLVGLADGAGYLLTLSNCVKWFPERKGLISAFAIGSYGLGSLGFKFIDTQLLE
                     TVGLEKTFVIWGAIALVMIVFGATLMKDAPKQEVKTSNGVVEKDYTLAESMRKPQYWM
                     LAVMFLTACMSGLYVIGVAKDIAQSLAHLDVVSAANAVTVISIANLSGRLVLGILSDK
                     IARIRVITIGQVISLVGMAALLFAPLNAVTFFAAIACVAFNFGGTITVFPSLVSEFFG
                     LNNLAKNYGVIYLGFGIGSIFGSIIASLFGGFYVTFYVIFALLILSLALSTTIRQPEQ
                     KMLREAHI"
BASE COUNT         2426 a         2434 c         2591 g         2665 t
ORIGIN      
        1 ttttttagga ttatatcaag gagaagaaac aaacttatta agctagaata gctacgggtg
       61 cttgagactg tttgtctcag gtattcaccg aaaggcagac agagaaaagc cccacctgac
      121 tataaatcaa agtgaggcta ccctatgcct gaacaccata aggttagcct cttactcgtt
      181 ggaaatcaac acagggggct gggaatgccg caaaaatacg gattactttc attaatagtg
      241 atttgtttca cgcttttatt tttcacctgg atggtaagag attcactgtg tgaattgcat
      301 attaaacagg ggcgttatga gctggcggca tttttagcct gcaatttaaa agagtaagag
      361 tcttcggcgg gaaattattc ccgcctttct tacggcgttg cgcattctca ttgcacccac
      421 atttattctt cacaaaaata ataatagatt ttactacgcg atcgattatt tatttcctga
      481 aaaaaataaa aaaaatcccc gccaaatggc agggatctta gattctgtgc ttttaagcag
      541 agattacagg ctggttacgt taccagctgc cgggccttta gcgccgcttt cgatggtgaa
      601 ggacactttc tgaccttcgt ccagagattt gtaaccatcg ttctggatag cagagaagtg
      661 tacgaacaca tctttagagc catcgtcagg agtgatgaag ccgaagcctt tgtcagcgtt
      721 gaaccatttt acgataccag tcattttacc ggacatagtg tattaccttt aataattaag
      781 tgtgcctttc ggcgatatgg cgtgctttac agattttgaa gcgttaaagg aatgtgcact
      841 acgaggggta tcaacgataa ctcttgaagg gacttgcctt actacactgc tttaatggtc
      901 tgtacgtcaa accgttgatg tgcattaagc cacgcattgg cgggtgatgc aacaattatt
      961 tttcatattt atgattaatc ggttggaaaa cggtcctgtc atcaggaccg taaacagcaa
     1021 taaagtggat aaaagtctat tccatcaact gcttacttaa tgccgggttg gcttgaatca
     1081 aacgcatcaa ttttagttcg gcacttgaag gcttcacgcg tctggattcc cattccttta
     1141 ccatggcgac tgatatgccc aaaacccggg cgaaatcatc gatttttaac cctgtccctt
     1201 ttcgtaactg ctcaatttcg gtacaggacg ttgttctgtg cgtcagggta attttctgcg
     1261 tttcatcttt aaaaacaatc tgttccaggc tgctcaacag ctcatgcatt ggatctttat
     1321 attccattga aaactcctca aatcacactg cgggatcgtg aattgcatcg aagctcatta
     1381 agaatagtcg ggaaaagcag acacagcggg gtgaagtcag ggcatgctct ggctatgatt
     1441 cgattcagcc agtcatttag cgtgacttat agccacctaa cgatctgata aatgccgata
     1501 tatctcttac cactcctgtt ttgtaaagat ttcgaaaatc taaagttctg cgaaggcgta
     1561 aatctcgggc tacaaaaaag caacggcaat atcatttttt aacaatgaaa caacaaatta
     1621 accttgtttc attttctcca tgattttacc aggaagatta cgtagaaagg gtatcctgca
     1681 agcctgtcct ggactatcct tgtcacgtca gacacgcgtg tgtcgttgtg cgcttttttt
     1741 gggtgaaagg agtaagaaaa tggcgacagg aaagtcctgc tctcgctggt ttgcgcctct
     1801 tgcggcgtta ttaatggtag ttagcctgag tgggtgtttt gataaagaag gcgatcagcg
     1861 taaagcgttt atcgacttcc tgcagaatac agtgatgcgt agcggtgaac gtctaccaac
     1921 cctgactgcc gatcagaaaa aacagtttgg tccttttgtc tctgattacg cgattctgta
     1981 tggttattct cagcaggtga atcaggcgat ggattccggt ctgcgcccgg tcgtagacag
     2041 cgttaacgca attcgcgtac cgcaggatta cgttacgcaa agcggtccgc tgcgtgaaat
     2101 gaacggttcg ctgggtgtgc tggcgcaaca actgcaaaat gcgaagttgc aggccgatgc
     2161 tgcgcactct gcgctaaaac agaccgatga tttgaaaccg gtctttgatc aggcattcac
     2221 caaagtggta acgacgccag ctgatgcatt gcaaccgttg attccggttg cacaaacttt
     2281 cacgcaacaa ctggtgatgg ttggagacta cattgctcaa caaggtactc aggtgagctt
     2341 tgtagcaaat ggtatccagt tcccgacttc gcagcaggca agtgaatata acaaactgat
     2401 tgcgccgtta ccggcacaac atcaggcgtt taatcaggcc tggactacag cagttactgc
     2461 aacccaataa agagtaaaag cccgagcgat tatcgggctt tacttcacgc agtcgcggct
     2521 tagtccgcga cgtgcggatt cacacagttc ttctcaacct ttccttgtaa cgcatcaatc
     2581 aaattatcca cggcacaggc ggccatgcca taacgcgtct catgggtggc agatccaata
     2641 tgcggtactg cgacgacgtt ggccattgag agcaacggcg aatctacgga cagtggctct
     2701 tgttcgaaga catccagccc ggcggcgtga atttcgcctt tctgcaatgc tgcgatcagt
     2761 gcattttcgt caaccaccgg gccacgtccg gcattaatga aaatggcgga gggtttcatt
     2821 ttggcgaatt gttctgcgcc aaacagatga tgcgtctcat cagttaacgg caggatcagg
     2881 caaacgaaat ctgactcttg taacagagta tccaaatcgc agtagcgggc gttgaagcgt
     2941 tcttctgctt ctttatggtg gcggcgcgcg ttatagagga tgggcatgtt gaagccaaag
     3001 tgcgcacgtt gtgccagcgc catgccgatc cgtcccatcc cgacaatgcc cagtgtttta
     3061 tggtgaacgt cagtgccgta ccagtccggg cctatgctcg cggtccattc gcctgctttt
     3121 acccgttctg ctacctccac aacccgacga gcggtagaca acaccagcgc catcagcgta
     3181 tcggcgacgg tttctgttaa tacggttggc gtgtgcatca gcagaatttt tcgggcggta
     3241 agcgcatcga catcaaaatt gtcatagccg acggagatcg ttgatgtggc acgcagtttc
     3301 ggcatttttt ccagcaatgc ggcatctaca ttctcgtttg aacccagtaa accttcagct
     3361 tcggcaaaaa ttgctgcatt ttgttcgacg gtttgtgggc tgaggtttgc cacctggtga
     3421 acggtgaaat gctcttgcag gcgttgcagt aaatcatcag gtaaggcttt gtagaggata
     3481 acggacggct tcatgcttct ctccattcac tgataaggcg ctcaccttag cctgaaatat
     3541 gatgaaggaa aactgaagaa tgccaggtga tttctgcatc acctggcatg aaagggatta
     3601 cagcgggctt aaggtaattt ctacacggcg gttttgcgcc ttaccttctg cggtgctgtt
     3661 gctggcgatt gggttagccg ggccaaggcc ctgagtacgg atgcggctgg cgtccacgcc
     3721 ctgggtgatc aacgcgctgg caacggaatc cgcacgctgc tgggagagac gcatgttcag
     3781 gtcgtgaccc cccgtgctgt cggtataacc aatcacgtta accgccgttt tcggatactc
     3841 tttcagcacc attgccacgc cggtcagggt gttagcgcct gccggtttca gggtcgcgct
     3901 gctgctgtcg aaggtcacat tgttcggcat attgaggata atgttatccc cgctgcgggt
     3961 tacgctaaca ccagtgccgc gcattttgtc acgcagcttc gcttcctgca catccatgta
     4021 ataacccacg ccgccgccca gagctgcgcc tgctgctgcg ccaatcagcg cgcctttacc
     4081 gcgatctttc ttcgaagaag agagcgcacc aatacccgcg cccacgagag agtccagacc
     4141 tgcgccgata gcagatttgc ctgcttcgcg ttcgccggtg taagggttag ttgtgcagcc
     4201 agataccgcc agagcgccac tcactacggc ggcaataaga taaacacgtt tcttcattgt
     4261 taatccttaa taaccttttt attctttgcc acgggttccg tggcgggaga ttatgccgcg
     4321 tgaacatgaa gattattcct gggaatactc ggaaatttgt aagtaatatt taactgctca
     4381 atacatctaa cctttcagga gtcttcggtt tggccaactc atcctcacga tattccgttc
     4441 tgactgccgc ccactggggg cccatgctgg ttgaaaccga cggcgaaacc gtgtttagct
     4501 cgcgtggcgc gttagccaca ggaatggaaa actccttgca gagcgcggtt cgcgaccagg
     4561 ttcacagcaa tacgcgggta cgatttccaa tggtgcgcaa aggctttctc gcgtcaccgg
     4621 aaaacccgca aggcattcgt gggcaggatg aatttgttca cgtgagttgg gatgaggcgc
     4681 tggatcttat tcaccaacaa cataaacgca ttcgtgaggc ttatggtccg gcatcgattt
     4741 ttgctggttc ctacggctgg cgttcaaacg gcgtgctgca taaggcctcg acattattac
     4801 aacgctatat ggcgctggca ggcggttata ccgggcatct gggggattat tcgaccggtg
     4861 cggcacaggc gatcatgccg tatgtcgtgg gtggcagcga agtttatcaa cagcaaacca
     4921 gttggccgct ggtgctggaa catagcgatg tcgtggtgtt gtggagtgct aacccactca
     4981 atacgctgaa aattgcgtgg aatgcatctg atgagcaggg gctttcttac ttttccgcac
     5041 tgcgtgacag cgggaaaaag ctgatctgta ttgatccaat gcgatcggaa accgtcgatt
     5101 tctttggcga taaaatggag tgggtggcac cgcacatggg caccgatgtt gcgctgatgc
     5161 tggggatcgc ccatacgctg gtggaaaatg gttggcacga cgaagcgttt ctggcgcgtt
     5221 gcaccacagg ttatgccgtc ttcgcctctt atttgctggg cgagagtgac ggaatagcca
     5281 aaaccgccga atgggcggca gggatttgtg gggttcacgc agcgaaaatt cgcgagttgg
     5341 cggctctttt ccaccaaaac acgaccatgc tgatggctgg ctggggaatg cagcgccaac
     5401 agcttggtga gcaaaaacac tggatgatcg tcacgctggc ggcaatgttg gggcaaatcg
     5461 gcacacccgg cggcggtttt ggtctttctt atcattttgc caatggtggt aatcccacgc
     5521 ggtgttctgc ggtgctctct tccatgcagg gtagcttgcc gggtggcagc gatgcggtag
     5581 ataaaatccc tgttgcccgt attgttgaag cactggaaaa ccctggctgc gcataccaac
     5641 acaatggcat gaatcgcctc ttcccggata ttcgctttat ctggtgggcg ggtggcgcca
     5701 acttcaccca tcatcaggac actaatcgcc tgatacgagc ttggcaaaaa ccggagctgg
     5761 tagttatctc cgaatgcttc tggacggcgg cggcaaaaca cgcggatatc gttctgcctg
     5821 cgactacctc ttttgagcgt aatgatctca ccatgaccgg cgattacagt aatcagcatc
     5881 tggtgccgat gaagcaagtg gtgccgccac gctatgaagc gcgtaatgat tttgatgttt
     5941 ttgccgagtt aagtgaacgc tgggagaagg gcggttatgc acgttttacg gaaggaaaaa
     6001 gtgagttgca atggctggaa acgttttata acgttgcccg acagcgcggg gcaagccagc
     6061 aggttgaatt gccgccattt gctgagttct ggcaagccaa tcagttaatt gagatgccgg
     6121 aaaacccgga cagcgagcgg tttattcgct tcgctgattt ttgccgcgat ccgcaggcgc
     6181 atccattaaa aaccgccagc ggtaagattg aaatcttctc gcagcgtatt gccgattacg
     6241 cttatccgga ttgcccgggg catccaatgt ggctggagcc ggacgaatgg cagggcaatg
     6301 ccgaaccgga acagttacag gtactttctg ctcatccggc gcatcgtctg cacagccagc
     6361 tgaattacag ttctctgcgc gaattgtatg cggtggcaaa tcgtgagcct gtcaccattc
     6421 atcctgacga tgccctggcg cgcggcattc aagatggcga tactgttcgg ctgtggaacg
     6481 cacgcgggca aattcttgcc ggagtggtca ttagcgaggg aattaaacct ggcgtgattt
     6541 gtattcacga aggggcatgg ccggatttgg atttaaccgc tgacggtatt tgtaaaaacg
     6601 gcgcagtcaa cgtgctgacc aaagatctcc ccagctcgcg gctggggaat ggctgtgcgg
     6661 gtaatacggc gctggcatgg ctggaaaaat acaacggtcc ggaactgaca cttacagcgt
     6721 ttgaaccacc ggccagctca taatccaggt gggtagttgg gtttcatcct gccatgcgca
     6781 atcgacaatg tgaaaaccct gcgcttggta aaaatttatc gccggttgat ttttttgata
     6841 aacctccagc atcaggtggg gatggcgctg ctgcacatat tgcatcagcg ccttaccaat
     6901 accgcgcctg acggccttcg gtgcgacaaa catcgctgcc agaaatcggc cttccataat
     6961 gctgacaaaa ccgagaagct tactgtcttc ttcccagacc cagttttgcg cattggcaag
     7021 atacgcatcc cgcaccagcg gaatgcaatc acgccagtaa ttcgctttta taaagggatg
     7081 tccccaggtt gtactttcca gccacagttc gaggatcgcg gggagttctg aacgttgcgc
     7141 ttcccgaatc atggtttatt tcccggatag caacagcagc caaccacatg atcattcacc
     7201 agcccacatg cctgcataaa ggagtaacag attgtggtac cgacaaactt aaaaccacgt
     7261 tttttcagtg ctttagatag ggcgtcggag gcgggcgtag atgtggggat ttcgctcaac
     7321 gttgtggctt gtgtcacctg tggctgatga tttacaaacg accagacaaa gtcggcaaac
     7381 ggttcgccgt tctgttccat ttgcaggtac gcccgcgcat taccaataat tgcctgaatt
     7441 ttcccgcgat ggcggataat cccggcgtcc tgtaccagtc tttcgacatc ctcttcctgc
     7501 attgctgcga ccttcaccgg atcgaactga tgaaagcagg cgcgatagtt ttcgcgtttt
     7561 ttgaggacgg tgatccacga taacccagcc tgctgccctt caaggcagat catttcgaac
     7621 agttttttac tgtcagtttc aggcacgccc cactcattat catggtaggc aatataaagc
     7681 gggtcctgac tcacccagcc gcaacgttcc atactttccc tcgctatgta cccgatcgta
     7741 aaaatttcag ccgcttttct tgacgcatcg gtgaaaaagt caatatttaa tacagggcta
     7801 ctatgcccga tatccttcat acaatgacaa taatattgcc gaattcggct cttccctgga
     7861 gtcgtgttaa tgatcataaa aaaaagcggt ggtcgctggc agctaagcct gctggcgagc
     7921 gtggtaatca gcgccttttt tctcaacaca gcttacgcct ggcaacaaga atatatcgtt
     7981 gatacgcaac ccggacattc cacagagcgt tacacctggg atagtgatca tcaacctgat
     8041 tacaacgata ttttgtcgca acgtattcaa agtagccaaa gggcgctggg actggaagtc
     8101 aatctggcgg aagaaactcc tgtggatgtg accagcagta tgagtatggg ctggaatttt
     8161 cctttatatg aacaggttac aaccggcccg gtcgcggcat tacattacga tggcacaacc
     8221 acctcgatgt ataacgagtt tggcgacagt actaccacgc tgaccgatcc gttatggcat
     8281 gccagcgtga gtagcttagg ctggcgtgtt gactcccggc ttggcgatct ccgaccctgg
     8341 gcgcaaatca gctataacca gcaatttggc gagaatatct ggaaggcgca atcaggcctg
     8401 agccggatga cggcgacaaa ccagaacggc aactggctgg atgtcaccgt aggcgctgat
     8461 atgttgctca atcaaaatat tgccgcctat gccgcgctaa ctcaggcaga aaataccact
     8521 aataatagcg actatctgta tacgatgggg gttagcgcca gattttaacg taacagtcac
     8581 aattgaaacc attgaataac aatagttgtg gtgatagtgg gtgctaactt acaaataata
     8641 aatttggtga ataattgtcg cgtcattcat tcctgaacta aggcatttca ttccgttctg
     8701 atggcatttc atgccgtttt tccccaggca taaaatgcac ttcgttatgg ttgtcggcag
     8761 agatttttcc tttttattac tgcaggaata ctgccatgac accttcaaat tatcagcgta
     8821 cccgctggct gacactcatc ggtactatca ttacccagtt tgcgctgggg tcggtttata
     8881 cctggagcct gtttaatggc gcgctttctg ccaagctgga tgcgccggta agccaggtcg
     8941 ctttctcttt cggcttgtta agtctggggc tggcaatttc atcttctgtt gcggggaaat
     9001 tacaggaacg ttttggcgtt aaacgcgtca ctatggcttc cggcattttg ctaggattag
     9061 gcttcttcct gacagcgcat tctgacaacc tgatgatgct gtggttaagc gccggtgtgc
     9121 tggtcggtct ggcggatggc gcgggttacc tgctgacgct ctctaactgc gtgaagtggt
     9181 tcccggagcg taaaggtctg atctccgcgt tcgctatcgg ttcttatggt cttggtagcc
     9241 tgggtttcaa atttatcgac acgcagctgc tggaaacggt gggtctggaa aaaacatttg
     9301 tgatttgggg agcgattgcg ctggtgatga ttgttttcgg cgcaacgtta atgaaagacg
     9361 caccaaaaca ggaagtgaaa accagcaatg gtgtggtgga gaaagattac acgctggcag
     9421 agtcgatgcg taaaccgcag tactggatgt tagcggtaat gttcctgact gcctgcatga
     9481 gcggcctgta cgtgattggg gtagcgaaag atatcgccca aagtctggca caccttgatg
     9541 tggtttccgc agccaatgca gtaacggtta tttccatcgc taacctttca ggtcgtctgg
     9601 tgctgggcat tctgtctgac aaaattgccc gtatccgtgt tatcaccatt ggtcaggtga
     9661 tttcgctggt gggtatggcg gccctgctgt ttgcaccatt aaatgcagtg acgttctttg
     9721 cagcgattgc ctgcgtggca tttaactttg gcggcactat taccgtcttt ccatcactgg
     9781 tcagtgagtt cttcggcctc aataacctgg cgaaaaacta cggtgtgatt tacctcggtt
     9841 tcggtatcgg tagcattttt ggttcgatta tcgcctcact gtttggcggt ttctatgtga
     9901 ccttctacgt gattttcgcc ctgctgattc tgtcattggc gctttctacg acgattcgtc
     9961 agccagagca gaaaatgttg cgtgaggcgc atatttagaa atatgttgct actgaaataa
    10021 atacgaggag ggagacttca aagtctccct tttttatgga cgcatattaa aagaacaata
    10081 atattcatac cacaaatata ttttatttat atatta
//
LOCUS       DADMJB010000155         9998 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.157, whole genome shotgun sequence.
ACCESSION   DADMJB010000155 DADMJB010000000
VERSION     DADMJB010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9998)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9998)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9998
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.157"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(264..1607)
                     /gene="gdhA"
                     /locus_tag="JN078_003383"
     CDS             complement(264..1607)
                     /gene="gdhA"
                     /locus_tag="JN078_003383"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013366584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HAY9042470.1"
                     /translation="MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPK
                     YRQMSLLERLVEPERVIQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVN
                     LSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSESEVMRFCQALMTELYRHLGA
                     DTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYF
                     TEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTK
                     EKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSVPVDIALPCATQNELDVGAAHQ
                     LIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLG
                     WKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGVI"
     gene            1843..2115
                     /locus_tag="JN078_003384"
     CDS             1843..2115
                     /locus_tag="JN078_003384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnjH family protein"
                     /protein_id="HAY9042471.1"
                     /translation="MSRALFAVVLAFPLIALANPHYRPDVEVNVPPEVFSSGGQSAQP
                     CTQCCVYQDQNYSEGAVIKAEGILLQCQRDDKTLSTNPLLWRRVKP"
     gene            complement(2081..2488)
                     /gene="nudG"
                     /locus_tag="JN078_003385"
     CDS             complement(2081..2488)
                     /gene="nudG"
                     /locus_tag="JN078_003385"
                     /EC_number="3.6.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP pyrophosphohydrolase"
                     /protein_id="HAY9042472.1"
                     /translation="MKMIEVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVELDES
                     QQQALVRELNEELGIEATVGEYVASHQREVSGRIIHLHAWHVPDFHGTLQAHEHQALV
                     WCSPEEALQYPLAPTDIPLLEAFMALRAARAAD"
     gene            2575..3186
                     /locus_tag="JN078_003386"
     CDS             2575..3186
                     /locus_tag="JN078_003386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416272.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HAY9042473.1"
                     /translation="MLDRHLHPRIKPLLHQCVRVLDKPGITPDGLTLVGFAIGVLALP
                     FLALGWYLAALVVILLNRLLDGLDGALARRRELTDAGGFLDISLDFLFYALVPFGFIL
                     AAPEQNALAGGWLLFAFISTGSSFLAFAALAAKHQIDNPGYAHKSFYYLGGLTEGTET
                     ILLFVLGCLFPAWFAWIFGALCWMTTFTRVWSGYLTLKSLQRQ"
     gene            complement(3195..4502)
                     /locus_tag="JN078_003387"
     CDS             complement(3195..4502)
                     /locus_tag="JN078_003387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416271.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HAY9042474.1"
                     /translation="MKRVSQMTALAMALGLACASSWAAELAKPLTLDQLQQQNGKAID
                     TRPSAFYNGWPQTLNGPSGHEPAALNLSASWLDKMSTEQLNAWIKQHNLKADAPVALY
                     GNDKDVDAVKTRLQKAGFTHISILSDALSEPSRLQKLPHFEQLVYPQWLHDLQQGKEV
                     TAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKH
                     GIRHDTTVILYGRDVYAGARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERGTPPKV
                     KAEPDFGVKIPAQPQLMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGE
                     IAGARWGHAGSDSTHMEDFHNPDGTMRSADDITAMWKAWNIKPEQQVSFYCGTGWRAS
                     ETFMYARAMGWKNVSVYDGGWYEWSSDPKNPVATGERGPDSSK"
     gene            complement(4569..5222)
                     /locus_tag="JN078_003388"
     CDS             complement(4569..5222)
                     /locus_tag="JN078_003388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAY9042475.1"
                     /translation="MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLF
                     SWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALP
                     STLKGTARRNAVKDALDRAGLAETYHQDPATLSGGQRARVALLRALLAQPKALLLDEP
                     FSRLDVALRDNFRQWVFSEVRELAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR"
     gene            complement(5222..6757)
                     /locus_tag="JN078_003389"
                     /pseudo
     CDS             complement(5222..6757)
                     /locus_tag="JN078_003389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416269.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            complement(6730..7896)
                     /locus_tag="JN078_003390"
     CDS             complement(6730..7896)
                     /locus_tag="JN078_003390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HAY9042476.1"
                     /translation="MRHCGWLLGLLSLFSLATHASDWQEIKNEAKGQTVWFNAWGGDT
                     AINRYLDWVSGEMKTHYAINLKIVRLADAADAVKRIQTEAAAGRKTGGSVDLLWVNGE
                     NFRTLKEANLLQTGWAETLPNWRYVNTQLPVREDFSVPTQGAESPWGGAQLTFIARRD
                     VTPQPPQTPQALLEFAKANPGTVTYPRPPDFTGTAFLEQLLIMLTPDPAALKEAPDDA
                     TFARVTAPLWQYLDALHPYLWREGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQKI
                     ASGDLPASSYSFGFREGMIGNVHFVTIPANANASAAAKVVANFLLSPDAQLRKADPVV
                     WDDPSVLDPQKLPDGQREILQSRMPQDLPPVLAEPHAGWVNALEQEWLRRYGTH"
     gene            complement(7906..8454)
                     /locus_tag="JN078_003391"
     CDS             complement(7906..8454)
                     /locus_tag="JN078_003391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HAY9042477.1"
                     /translation="MGLPPLSKIPFILRPQAWLHRRHYGEVLSPIRWWGRIPFIFYLV
                     SMFVGWLERKRSPLDPVVRSLVSARIAQMCLCEFCVDITSMKVAERTGSTDKLLAVAD
                     WRQSPLFSDEERLALEYAEAASVTPPTVDDALRTRLAAHFDAQALTELTALIGLQNLS
                     ARFNSAMDIPAQGLCRIPEKRS"
     gene            complement(8454..9161)
                     /locus_tag="JN078_003392"
     CDS             complement(8454..9161)
                     /locus_tag="JN078_003392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001697152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HAY9042478.1"
                     /translation="MMKMQSRKIWYYCITLIILLFAMLLAWALLPGVHEFINRSVAAF
                     AAVDQQGIERFIQSYGALAAVVSFLLMILQAIAAPLPAFLITFANASLFGAFWGGLLS
                     WTSSMAGAALCFFIARVMGREVVEKLTGKTVLDSMDGFFTRYGKHTILVCRLLPFVPF
                     DPISYAAGLTSIRFRSFFISTGLGQLPATIVYSWAGSMLTGGTFWFVTGLFILFALTV
                     VIFMAKKIWLERQKRND"
     gene            complement(9176..9852)
                     /gene="ydjY"
                     /locus_tag="JN078_003393"
                     /pseudo
     CDS             complement(9176..9852)
                     /gene="ydjY"
                     /locus_tag="JN078_003393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416265.4"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="protein YdjY"
     gene            complement(9857..>9998)
                     /locus_tag="JN078_003394"
     CDS             complement(9857..>9998)
                     /locus_tag="JN078_003394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HAY9042479.1"
                     /translation="RFILQLCLAGLALFILVQLAKLYARHKHVDLSASRRSPLTHPKN
                     EG"
BASE COUNT         2384 a         2721 c         2584 g         2309 t
ORIGIN      
        1 atctgctgct atcgcagaaa gttaacggat gctgaacttg aagcgtgtta tcgttacgac
       61 aagcagtttt gggagcacta cagtaagaaa tgccgttggc ccataagaaa tgttccctgg
      121 ggagcatcat ccgttaaata ctcataaacg cctgaaattt tgccgggggc gctgcgcttg
      181 cccggcctac attagagcgt aactgcaatg aattgtgccc atttgtaggc ctgataagcg
      241 tagcgccatc aggcatttac aacttaaatc acaccctgcg ccagcatcgc atcggcaacc
      301 ttcacaaaac cggcaatgtt cgcgccctgc acgtagttgg tttgctcacc ttcaccacca
      361 tgctcaacac aggcatggtg gatatccagc atgatgtgat gcaaacgtgc gtcaactttc
      421 tcggctttcc agcccaggcg cgcagcgttt tgcgccattt caaggcctga cgttgctaca
      481 ccgccagcat tagccgcttt acccggtgca aacagtacgc ctgcctgctg gaacagttca
      541 gtcgcttcga tggtggtcgg catatttgcc ccttcggcga cggctttaac gccattggcg
      601 ataagctgat gcgcggcgcc aacatccagt tcgttctggg tggcgcaagg cagggcgata
      661 tcaaccggta cagaccacgg ctgttggcct tcgagataga ccagaccaaa ttctttggcg
      721 taatctgcca ctcgaccatc gcggctggct ttgatttcga taagacgtgc cagtttctct
      781 ttcgtgaatc cgctttcatc aactacagtg ccgctggagt ctgacgcagt gatcacacga
      841 gcaccaaatt ccatcgcttt ttcgatagcg tactgggcga cgttgccgga gccagaaacg
      901 gaaacgcgca tcccttcaaa acccataccg tggcgtttta acattgcttc tgtgaaataa
      961 accagaccgt agccggtagc ttccgggcga ataagactac cgccaaatga aaggccctta
     1021 ccggtgaaga cgcaggcggt attgttggag agctttttca tcatccccgc cataaagccg
     1081 acttcacgac caccaacgcc gatatcacct gccggaacgt cagtatccgc gcccagatga
     1141 cgataaagct cggtcatcag cgcctggcag aaacgcatca cttcgctttc gcttttacct
     1201 ttcgggtcaa aatcgctacc gcctttacca ccgcccatcg gcagggtagt cagggcattt
     1261 ttgaaggttt gttcgaagcc gaggaatttg agaatggaga ggttaactga cggatggaag
     1321 cgcataccgc ctttgtacgg gccgatggct gagctgaact gcacacgcca tgcacggttg
     1381 acctgtacct ggttgcgatc atcaacccat accacgcgaa actggatcac gcgctccggt
     1441 tcaaccagac gctccagtaa tgacatctgg cgatattttg gattttgttc aagaaaaggc
     1501 cagagtgtgg tcattacttc acgaacggct tgcgcgaact cggtttgatt cgggtcgcgc
     1561 ttttggacat ggttgaggaa tgactccaga gaatatgtct gatccataga tataaaaccc
     1621 ttatatatta atacgattgt gcttatgttg tttatgtcat gtgcttttgc agttttcgac
     1681 tataccatca agaatgtgac ggtaagcaag aaaaaaatga cccaggaaag caaattaata
     1741 acgagagtaa tctcataacc aaatgcgata actcagacgc taaagttttg ccacccggct
     1801 accgttatca gttgcagaga caataacgtt aaggagttcc ctgtgagtcg agcattgttc
     1861 gccgtagtat tagcatttcc attaattgca ctggctaacc cgcattatcg tccggacgtg
     1921 gaggtaaacg taccgccaga agtgttcagt tcaggcgggc agtcagcgca gccctgtact
     1981 cagtgctgcg tttatcagga tcaaaattat tctgaagggg cggtaattaa agccgaagga
     2041 atactgctgc aatgccagcg ggatgacaaa acccttagca ctaatccgct gctctggcgg
     2101 cgcgtaaagc cataaacgcc tctaatagtg gaatgtcagt aggggccagc ggatattgca
     2161 gcgcctcttc aggtgagcac cagaccagcg cctgatgttc atgtgcctgt aacgtcccgt
     2221 ggaagtcggg tacgtgccag gcatgaagat ggataatccg gcccgaaact tctcgctgat
     2281 ggctggcaac atactcaccc acagttgctt cgatgcccaa ttcttcgttt aactcacgca
     2341 ccagtgcctg ctgctggctt tcatccagct cgactttacc accggcaaac tcccataatc
     2401 ccgcctgatc gctctgggcg gggcgttgcg cgagtaaaat tttgccatca cgttcaatga
     2461 tggcggcaac aacttcaatc attttcataa attacacacg ggcagataag cgaaaaatgc
     2521 cataatatcc gcactgttgc tcaatcagaa aggctttata tttaaggagt gcctgtgcta
     2581 gaccgccatc ttcatccccg gattaaaccg ttgttgcatc agtgcgtgcg ggttcttgat
     2641 aaaccgggca ttacgccaga tggtttaaca ttagtgggat ttgccatcgg cgtgctggct
     2701 ctgccgtttc tggcgctggg ctggtatctg gcggcgctag tcgtcatttt gttgaacagg
     2761 ctgcttgatg gtctggacgg tgcgctggcg cggcgcagag agcttaccga cgcgggcggc
     2821 tttcttgata tttctctcga ttttctcttt tacgcgctgg tgccgtttgg ctttattctt
     2881 gctgcaccgg agcaaaatgc gctggcaggc ggctggttgt tgtttgcgtt tatcagcacg
     2941 ggcagcagtt ttctcgcctt tgctgcactg gcagcaaaac atcagattga taaccccggt
     3001 tatgcacata agtcgtttta ctatctgggg ggattaaccg aaggcacaga aacgatctta
     3061 ctgtttgtgc tgggatgttt attccctgca tggtttgcgt ggatcttcgg tgcgttgtgc
     3121 tggatgacga cctttacgcg ggtgtggagt gggtatctga cgctgaagtc gctccagcgt
     3181 cagtaattgc aatgttattt gctactgtcc gggccgcgtt caccggttgc taccggattt
     3241 tttggatcgc tgctccattc gtaccagccg ccgtcataca cggaaacatt cttccaaccc
     3301 atggcgcgtg cgtacataaa ggtttcggac gcgcgccagc cggtgccgca gtagaatgaa
     3361 acttgctgct ctggtttgat attccacgct ttccacatag cggtaatatc atcggcgctg
     3421 cgcatggtgc catccgggtt atgaaaatct tccatatgcg tcgagtcgct accagcgtgt
     3481 ccccaacgtg ctccggctat ttcacctttt ggtttaatat agctgtaacc gctggtcgta
     3541 ccgataaatt ctggccatga acgaatgctc accagcgatg catcctggcg atgcagcagt
     3601 ccacgggcct gttccatatc gagcatcaac tgcggttgtg ccgggatctt cacgccgaaa
     3661 tccggttccg ctttcacttt cggtggcgtt cctcgctcaa caggcagtcc cgcgtcggac
     3721 caggtttgcc agccgccatc cagcagacgc acatctttca cgcctgcgta gagcataatt
     3781 tgcgccacac gcgctccagc gtatacgtca cgcccgtaca gaatgaccgt ggtgtcatgg
     3841 cgaatgccgt gttttgccag catcgctttt agttgttcat cagaaacttt gttccacagc
     3901 ggttcgcttt ccacttcgtt ggtatcgatg tagtcagcac cgggaatatg gctgataagg
     3961 taaagcttag gagcgcccca ggccgcttca atgactttcc agtcaccggc aggtttcgcc
     4021 gtaacctctt taccttgttg caggtcgtgc agccattgcg gataaaccag ctgctcaaag
     4081 tgcggcagtt tttgtagacg ggaaggttcg cttagcgcgt cactcagaat ggagatatgc
     4141 gtaaaacctg ctttttgcag tcgcgttttg acggcgtcga catctttgtc attaccgtac
     4201 agcgccaccg gggcatcggc tttcaggtta tgttgcttga tccacgcgtt gagctgttcg
     4261 gtgctcattt tgtcgagcca gctggcagag aggtttaagg cggcaggttc atgaccagaa
     4321 gggccattta aggtttgtgg ccagccgtta taaaacgcgc tggggcgagt atctatcgct
     4381 ttgccatttt gttgttgaag ctggtcaagt gtaagaggct tcgccagttc agcggcccac
     4441 gaagaagcgc aagccagccc taaagccatt gccagcgcgg tcatttgaga aacacgtttc
     4501 atcgaaaatc ccgacattgt agttttgagt gcgccattct gaactgacgc attgagaaaa
     4561 actttgcgtt atcgcagttt gttgtaattt tctgaccact gcgccatatc cagaacagaa
     4621 ctatcagcag gaacatcctg gagatcgtgc gttacctgaa cgacggggat cgccagttcg
     4681 cgaacttcgc tgaacaccca ctggcgaaaa ttatcgcgca gagccacatc aagacggctg
     4741 aatggctcat ccaggagtaa cgcttttggc tgagcgagaa gggcgcgcag cagggccacc
     4801 cgcgctcgct gaccgcctga taatgtcgca gggtcctggt gataagtttc agccagtccc
     4861 gctcgatcaa gcgcgtcttt cacggcattg cgcctggcag tccccttgag cgtcgacggt
     4921 agcgccagca gtaaattttg cccgacgctg aactggtcaa ataacagtgc atcctggaaa
     4981 agaatgccaa tctgacgctg tgcggtgggt agcatgtcaa tccgttgctc attgagccat
     5041 agctcacctg tacaagaaaa ctgtccagcc agtgcaccaa tcatccatga aaacagagtg
     5101 gattttccac agccagacgg ccccattaac gtgacgatgt cacctttatc aaccgtaaag
     5161 ttaacgtttg tcagcaagcg gctttctggt aaacgtagcg aaacattttt cacgcagagc
     5221 attagcggag tccttgtctg acataaccta cccattttgc gactaacgcg gtcagggcaa
     5281 aaataataag cggtaacaac agttgccata aagcctgggc ggcgagaata ccgttgctgc
     5341 cgccgctgct taatgccacc gcctcagtgg tgagcgtcgg aaaacgcccc gcgcccagcc
     5401 acagcgtcgg catatactgc gcaatactga ctgaaaatcc caccgcgaag gcaatcagca
     5461 cagggcgcaa catgagtgtg catttcacgt aaaagaagat tttggcccgc taccagccca
     5521 gtgtttgtgc aatcaaaatt aaccgtgaat caatgcgctg ccaggcgggt tgcaggataa
     5581 acagcatcca cggcattacc cacagcagat gcccccagac caccgccgtc cagcttccat
     5641 ccaggttcag ccatagcgcc agcgtgtact ggcccgccac cagtggcaga gcgggcaata
     5701 gaatgggcaa ccatagccac aactggcgac gctgtggccc ccattccagc cacagcagta
     5761 acaggagcaa agcgatgaat gttgctacca gccccattgt cagactgttg atgagtgctt
     5821 cactattgat cgtcgactga tccgcgagga tcgccagcag aaccacacac agcacaccgg
     5881 ttaagggtaa aaaactcgcc agcgtagtgc ctggtaataa aggtgtggca ggcttgcgaa
     5941 tgccatctac gcggggaata gtgcgccgcc agctgcgcca tagcagatag ctcagcaaaa
     6001 cgtaggcggc gagtaacagc atcagcagca gactggcgag tgcgcctttc gtttgttgat
     6061 ccgcgtcgcc ctgagttaac cactgccagc taattactgc cagcgtcggt ggattacctg
     6121 gcccaagaat aatcgccaca tccacgaccg aaagcgacca ggcaacaatc gccagcatcg
     6181 ccattgccag cgaaggcgcg acggagggca acagcagcca gttcaggcat tgccagcggc
     6241 tgtagcccag cgaatccagc acaatgacct gctgcaacag ccgtttttcg ctcaatactg
     6301 ccgctaagat ccacagcaga aatgcgcttt ctttcactgc aagggtgagg cccagaccga
     6361 tgccaaatcg gtccattggc ggagtgaaat acgggaaata gtcatatagc agccctccgt
     6421 cagcaaagag cagcagggcg ctggtggcaa aagccacatg gggaatggcg agcagccacg
     6481 gcagacgggc gcacatacgc tgccatttcg gcccaggcca tagcgccaca atcaccagca
     6541 gggcaatcaa caatgccccg accgccgcga tggttgtcga caccagcgtt gccagtaatg
     6601 catgcggtaa ctgtggatcg gcaaataacg cctgccagtg tgtcaacgac aacgcaggcg
     6661 atatcagcgt gagagctgcc gggatcagcg gtgcataaat caccgccacc atcgcccaca
     6721 gcaaaaagat taatgcgtac cgtaacggcg taaccattct tgttccagtg cattcaccca
     6781 tcctgcgtgc ggttcagcca gtaccggcgg cagatcctgc ggcattcttg attgcaatat
     6841 ttcgcgctgc ccgtcaggca gtttttgcgg atcgagaaca gaaggatcgt cccagacaac
     6901 gggatctgct ttacgcagtt gcgcatcggg tgagagcaga aaattggcaa ctaccttcgc
     6961 cgcagcactg gcattcgcgt tggctggaat ggtgacgaaa tgcacgttgc caatcatccc
     7021 ctcgcgaaag ccaaaactgt aactgcttgc cggcaaatcg ccgctggcga ttttttgctg
     7081 cgcatgcgcg gggttaaagg tcagcgacag gcgcaatgtg ccggctttca gcagagcatc
     7141 catccgcgcg ggcgaaggcg ggaaatcctt tccttcgcgc cacaaatacg gatgcagtgc
     7201 atcaagatat tgccacaagg gcgcagtgac acgggcgaaa gtcgcatcgt ccggcgcttc
     7261 ttttaatgcg gcgggatctg gcgtcagcat aatcagcaac tgttcaagaa acgccgtgcc
     7321 ggtaaagtcc ggtgggcgcg gataagtaac cgtgccggga ttggctttag caaactccag
     7381 taaggcttgc ggcgtttgtg gtggctgtgg cgtaacatcg cggcgggcga taaacgtcag
     7441 ttgtgcgccg ccccagggcg attccgcacc ttgtgtcggc actgaaaaat cttcccgcac
     7501 cggcagctgt gtgttgacat agcgccagtt gggcagagtc tccgcccagc ccgtttgtaa
     7561 taaattggcc tcttttaagg tgcggaagtt ttcgccgttc acccagagca gatccaccga
     7621 gccgcccgtt ttacgaccgg cagcagcttc ggtctgaatg cgcttcaccg cgtctgcggc
     7681 atccgcgaga cgaacaatct tcaggtttat agcgtaatgg gttttcatct cgccgctaac
     7741 ccagtcgaga tagcggttaa ttgcggtatc gccgccccag gcgttaaacc agacggtttg
     7801 ccctttggcc tcatttttaa tttcctgcca gtcactggca tgtgttgcca aagaaaacag
     7861 cgataacaat cccagcaacc acccacaatg gcgcatcttc tctccttaag aacgtttttc
     7921 cggaatacgg cacagcccct gagcgggaat gtccatggca gaattaaaac gagccgacag
     7981 gttttgcagg ccgatcaatg ccgtcagttc ggtgagcgcc tgagcgtcaa aatgcgcagc
     8041 cagtcgggta cgcagggcat catcgactgt tggcggtgtg acgcttgcgg cttcggcgta
     8101 ctccagcgcc agccgttctt catcgctaaa gagcgggctt tgccgccagt cagccactgc
     8161 cagcagttta tcggtgctgc cggtacgctc ggcgactttc atactggtga tatccacaca
     8221 aaactcacac aggcacattt gcgcaatgcg cgcgctgaca agcgatcgca ctaccggatc
     8281 gagcggtgag cgtttgcgct ccagccaccc aacaaacatt gacaccaaat aaaagataaa
     8341 cgggatccgc ccccaccagc gaatcgggct tagcacctcg ccgtaatggc gacgatgcag
     8401 ccacgcctgc ggacgtaaaa tgaaaggaat tttgctaagc ggcggtaaac ccatcagtca
     8461 ttcctcttct ggcgctcaag ccatattttc ttcgccataa aaatcaccac ggtcagggca
     8521 aacagaataa acagtccggt gacaaaccag aaagtaccgc ctgttaacat gctgcccgcc
     8581 caggaataaa caatagtcgc cggtaattga ccaagcccgg tggagataaa aaacgagcga
     8641 aaacgtattg aagtcagacc ggcagcatag ctgattggat cgaaagggac aaaaggcaat
     8701 aaccgacaga ccaggatggt gtgtttgccg tagcgagtga aaaagccgtc catactgtca
     8761 agcacggttt tgccggttaa tttttccacc acttcgcggc ccatcactct ggcgataaaa
     8821 aagcacagcg ccgcgccggc catcgaactg gtccacgaca gcaagccgcc ccagaacgcg
     8881 ccaaacagcg acgcattggc aaaggtgatc aaaaacgcag gtagcggtgc agcaatggcc
     8941 tgtaaaatca tcaacaagaa cgagacaact gccgccagtg cgccgtaaga ctgaataaag
     9001 cgttctatac cctgttggtc cacggcggca aacgccgcaa cgctgcgatt gataaactca
     9061 tggacgccgg gaagcagcgc ccatgcgagc agcatagcga acaacaggat gatgagggtt
     9121 atacagtagt accagatttt acgcgattgc atcttcatca tcctttatcc tggctttatt
     9181 cggtgatttt aaaggtaacc gttgccagcg tgttatccgc cgggagaact gaggcattgc
     9241 ctttgaattt cacttcgccg cgtttttcca ccgcaccata agtgtatgtt gcattgctga
     9301 cgatgccgac cgggcagcta tccagacaca ccagtcaacc cgttttcttc tcttctgctg
     9361 ccgttaaatt accgccaaag cgcatgtcca gtttcttgcc attactgtca acaatcactt
     9421 catcgaagga atacgctttt gccgcccctt gccagttgac cgaaatatcc agtttgctgc
     9481 ctgtgacatg agtcgtttct ttattatcca tcgtcatgtt ttcgcccggc gtaccacctg
     9541 ctctttcagg gcttcataaa atgctttcgg ggtcgcataa gccataaaca gcgatttatg
     9601 tccgttggag ccatctttaa acacaatacc gtgacgagtg tcgtcggtga ggaaacgacc
     9661 attaatttgc accagcatgg ttaccgtatg gttattggca tcgacgcgca gcggttggct
     9721 gttcgaaagt ccgtcgtatt ccacttttgc cgccgaattc tctttttgat cgcagccgct
     9781 aagcccggca acagccagta agcagagtgc agccagtcct tttttccatg acactgaata
     9841 atgttgcgac atcgttctat ccttcatttt ttgggtgagt aagcgggctg cggcgcgaag
     9901 cagacagatc cacatgtttg tgtcgggcgt agagttttgc gagctggacg agaataaaca
     9961 gcgccaggcc cgccagacag agttgtaaaa taaagcgc
//
LOCUS       DADMJB010000156         9955 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.158, whole genome shotgun sequence.
ACCESSION   DADMJB010000156 DADMJB010000000
VERSION     DADMJB010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9955)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9955)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9955
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.158"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            259..456
                     /locus_tag="JN078_003395"
     CDS             259..456
                     /locus_tag="JN078_003395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042480.1"
                     /translation="MEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLIYSSK
                     VMIISLFDSTVMPDKYRHNGK"
     gene            complement(406..1599)
                     /locus_tag="JN078_003396"
     CDS             complement(406..1599)
                     /locus_tag="JN078_003396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9042481.1"
                     /translation="MSPGIEDTPQKTLSCWPLAFSAGLLGIGQNGLLVVLPVLVIQTN
                     LSLSVWAALLMLGSMLFLPSSPWWGKQISRTGSKPVVLWALGGYGISFTLLGLGSVLM
                     ATSAITTAVGLGILIIARIAYGLTVSAMVPACQVWALQRAGEGNRMAALATISSGLSC
                     GRLFGPLCAAAMLAIHPLAPLGLLMAAPVLALLMLLRLPGTPPQPTPECKSVSLKRDC
                     LPYLLCAILLAAAVSMMQLGLSPALTRQFVTDTTAISQQVAWLLGLSAVAALIAQFGV
                     VRPQRLTPVALLLSAGVLMSGGLAIMLSEQLWLFYPGCAVLSFGAALATPAYQLLLND
                     KLADGAGAGWLATSHTLGYGLCALLVPLVSKTGVAIALIMAALFATILFTIVSVFIWH
                     YRTIK"
     gene            1735..3459
                     /gene="iucA"
                     /locus_tag="JN078_003397"
     CDS             1735..3459
                     /gene="iucA"
                     /locus_tag="JN078_003397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001314127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobactin synthase IucA"
                     /protein_id="HAY9042482.1"
                     /translation="MTLPSEKPATDVAAQCFLNALIRETTDWKLTEYPPDELLIPLDE
                     QKSLHFRVAYFSPTQHHRFAFPARLVTASGSYPVDFTTLSRLIIDKLRHQLFLPVPLC
                     ETFHQRVLESHVHTQQAIDARHDWAALREKALNFGEAEQALLTGHAFHPAPKSHEPFN
                     RREAERYLPDMAPHFPLRWFSVDKTQIAGESLHLNLQQRLTRFAAENAPQLLNELSDN
                     QWLFPLHPWQGEYLLQQGWCQALVAKGLIKDLGEAGTSWLPTTSSRSLYCATSRDMIK
                     FSLSVRLTNSIRTLSVKEVKRGMRLARLAQTDGWQMLQVRFPTFRVMQEDGWAGLLDL
                     NGNIMQESLFALRENLLVDQPKSQTNVLVSLTQAAPDGGDSLLVSAVKRLSDRLGITV
                     QQAAHAWVDAYCQQVLKPLFTAEADYGLVLLAHQQNILVQMLGDLPVGFIYRDCQGSA
                     FMPHATDWLDSIGEAQAENIFTHEQLLRYFPYYLLVNSTFAVTAALGAAGLDSESNLM
                     ARVRASLAEVRDQVTHKTCLNYVLESPYWNVKGNFFCYLNDHNENTIVDPSVIYFDFA
                     NPLQAQEV"
     gene            3460..4407
                     /gene="iucB"
                     /locus_tag="JN078_003398"
     CDS             3460..4407
                     /gene="iucB"
                     /locus_tag="JN078_003398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N(6)-hydroxylysine O-acetyltransferase"
                     /protein_id="HAY9042483.1"
                     /translation="MSEANIIHSRYGLRCEKLDKPLNLGWGLDNSAVLHCPGELPTGW
                     LCDALDQIFIAAPQLSAVALPWAEWREEPQALTLFGQVKSDIIHRTAFWQLPLWLSSP
                     ANRASGEMVFDAEREIYFPQRPPRPQGEVYRRYDPRIRRMLSFRIADPVSDAERFTRW
                     MNDPRVEYFWEQSGSLEVQTAYLERQLTGKHAFPLIGCFDDRPFSYFEIYWAAEDRIG
                     RHYSWQPFDRGLHLLVGEQQWRGAHYVQSWLRGLTHYLLLDEPRTQRTVLEPRTDNQR
                     LFRHLEPAGYRTIKEFDFPHKRSRMVMADRHHFFTEVGL"
     gene            4407..6149
                     /gene="iucC"
                     /locus_tag="JN078_003399"
     CDS             4407..6149
                     /gene="iucC"
                     /locus_tag="JN078_003399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobactin synthase IucC"
                     /protein_id="HAY9042484.1"
                     /translation="MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGA
                     QWRFIAERGIWGWLWIDAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYAT
                     LLGDLQLLKARRGLSASDLINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEY
                     TNTFRLHWLAVKREHMIWRCDNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPL
                     PVHPWQWQQKIATDFIADFVEGRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPL
                     TIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLVQSGAVILGEPAAGYVSHEGYA
                     ALARAPYRYQEMLGVIWRENPCRWLKPDESPVLMATLMECDENNQPLAGAYIDRSGLD
                     AETWLTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMKEGVPQRVLLKDFQGDMRLV
                     KEAFPEMDSLPQEVRDATSRLSADYLIHDLQTGHFVTVLRFISPLMVRLGVPERRFYQ
                     LLAAVLSDYMNKHPQMAERFALFSLFRPQIIRVVLNPVKLTWPDLDGGSRMLPNYLEN
                     LQNPLWLVTQEYES"
     gene            6146..7483
                     /gene="iucD"
                     /locus_tag="JN078_003400"
     CDS             6146..7483
                     /gene="iucD"
                     /locus_tag="JN078_003400"
                     /EC_number="1.14.13.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent L-lysine N(6)-monooxygenase"
                     /protein_id="HAY9042485.1"
                     /translation="MKKSVDFIGVGTGPFNLSIAALSHQIEELNCLFFDEHPHFSWHP
                     GMLVPDCHMQTVFLKDLVSAVAPTNPYSFVNYLVKHKKFYRFLTSRLRTVSREEFSDY
                     LRWAAEDMNNLYFSHTVENIDFDKKSRLFLVQTSRGEYFARNICLGTGKQPYLPPCVK
                     HVTQSCFHASEMNLRRPDLSGKRITVVGGGQSGADLFLNALRGEWGEAAEINWVSRRN
                     NFNALDEAAFADEYFTPEYISGFSGLKEDIRHQLLDEQKMTSDGITADSLLTIYRELY
                     HRFEVLRKPRNIRLLPSRSVITLESSGPGWRLLMEHHLDQGRESLESDVVIFATGYRS
                     ALPQILPSLMPLITMHDKNTFKVRDDFTLEWSGPKENNIFAVNASMQTHGIAEPQLSL
                     MAWRSARILNRVLGRDLFDLSMPPALIQWRSGSRKKPQPEAASLTHYTANIQE"
     gene            7489..9684
                     /gene="iutA"
                     /locus_tag="JN078_003401"
     CDS             7489..9684
                     /gene="iutA"
                     /locus_tag="JN078_003401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709458.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric aerobactin receptor IutA"
                     /protein_id="HAY9042486.1"
                     /translation="MRKKYMPRALGPLLLVVLSPAVAQQNDDNEIIVSASRSNRTVAE
                     MAQTTWVIENAELEQQIQGGKELKDALAQLIPGLDVSSQSRTNYGMNMRGRPLVVLID
                     GVRLNSSRSDSRQLDSVDPFNIDHIEVISGATALYGGGSTGGLINIVTKKGQPETMME
                     FEAGTKSGFNSSKDHDERIAGAVSGGNDHISGRLSVAYQKFGGWFDGNGDATLLDNTQ
                     TGLQHSNRLDIMGTGTLNIDESRQLQLITQYYKSQGDDNYGLNLGKGFSAISGSSTPY
                     VSKGLNSDRIPGTERHLISLQYSDSDFLGQELVGQVYYRDESLRYYPFPTVNANKQAT
                     AFSSSQQDTDQYGMKLTLNSQLMDGWQITWGLDAEHERFTSNQMFFDLAQASASGGLN
                     NHKIYTTGRYPSYDITNLAAFLQSSYDINDIFTVSGGVRYQYTENRVDDFIDYTQQQK
                     IAAGKAISADAIPGGSVDYDNFLFNAGLLMHITERQQAWFNFSQGVALPDPGKYYGRG
                     IYGAAVNGHLSLTKSVNVSDSKLEGVKVDSYELGWRFTGDNLRTQIAAYYSLSNKSVE
                     RNKDLTISVKDDRRRIYGVEGAVDYLIPDTDWSTGVNFNVLKTESKVNGQWQKYDVKE
                     SSPSKATAYINWAPEPWSLRVQSTTSFDVSDAEGNDINGYTTVDFISSWQLPVGTLSF
                     SVENLFDRDYTTVWGQRAPLYYSPGYGPASLYDYKGRGRTFGLNYSVLF"
BASE COUNT         2395 a         2564 c         2645 g         2351 t
ORIGIN      
        1 cataaaaaac atgtcagtga aaaagaaacc tggcgttggg ttgaaggata taataaagca
       61 acagaactgg ctcgccaatg ccctgatacc catgtattgt caatttctga tcgtgaaggc
      121 gatttttatg acctgtttga acgcgcagag cagactcccg gaataaaagc tgactggctt
      181 gtcagaatga aatttaataa cagagcaacg ctgaatatta atggtaaacg ggatcatagg
      241 ttgttgcacg aaagaatcat ggagattaca ccgcagcaac tggttgaatt cactatacct
      301 gatgggcggg ggcagcaagc cagaacactg cctgacatgc tttcatcaga cgcaggtcct
      361 ctctcatatc ctctgattta ctccagtaag gtgatgatca tatctttatt tgatagtacg
      421 gtaatgccag ataaatacag acacaatggt aaataatata gttgcaaata atgctgccat
      481 aatcagcgcg attgcgacac ctgttttcga taccagcggc accagcaaag cgcacagtcc
      541 atagccaagt gtgtgactgg tagcgagcca gcccgcgcct gcgccatcag ccagcttatc
      601 attcagtaga agttgataag cgggtgttgc cagagctgct ccaaatgaca gcactgcaca
      661 gcccgggtaa aacaaccata gctgttcgga gagcatgata gccagaccac cactcatcaa
      721 cactccggca ctcaggagca gggccaccgg agtcaggcgc tgcggacgga ctaccccgaa
      781 ctgcgcgata agcgcagcta ctgcggacag acccaacagc caggccacct gttggctaat
      841 ggcggtggta tccgtgacga actggcgagt aagggcaggc gaaagtccaa gctgcatcat
      901 gctcaccgcc gcagccagta atattgcgca aagcagataa ggcagacaat cccgcttcag
      961 actgacgctc ttgcactccg gtgtgggctg tggtggtgtg ccgggcaacc gcagcagcat
     1021 cagcagcgcc agcactggtg ctgccatcag tagccccagt ggcgccagag gatgaatggc
     1081 cagcattgct gccgcgcaca gcggcccgaa tagcctgccg caactcaggc cggagctgat
     1141 ggttgccaga gcggccatgc gattcccttc tccagctctc tgcaatgccc agacctgaca
     1201 ggctggcacc attgccgaca cggtcagccc gtaggcgatc cgggcgatga ttaatattcc
     1261 cagtcccacc gctgttgtta tggcgctggt agccatcagc acgcttccca gccctagcag
     1321 ggtaaagctt atgccatatc ctcccagagc ccacaacacc acaggtttac tgccagtacg
     1381 ggaaatttgc tttccccacc acggggacga tggcagaaac agcattgagc caagcatcag
     1441 cagggcagcc catacagaca gactcagatt tgtctgtatg accagaacag ggagcacaac
     1501 cagcagaccg ttctgtccga taccgagaag cccggcactg aacgcaagtg gccagcagga
     1561 cagtgttttt tggggcgtat cttcgatccc tggtgacatt ataatgcttc aactccatgt
     1621 attaattgtg tttatttgta aaattaattt atctgacaat aacatttatt gttgataatg
     1681 agaatcatta tcgacataat tgttattatt ttactgtgtg ggagctgttt gactatgacc
     1741 ctgccctctg aaaaaccagc cacagatgtg gctgcgcagt gcttcctgaa tgcactgatt
     1801 cgtgaaacca cagactggaa actgacagaa tacccgccag acgaattgct catcccgctg
     1861 gatgagcaga aatcgctcca tttcagagtg gcttatttct ccccaaccca gcatcaccgc
     1921 tttgcatttc ctgcacgtct ggtcacggca tcaggcagtt atcctgtcga ctttaccact
     1981 ctctcccggc ttattattga taagctacgc catcaactgt ttctgcccgt tcccctctgc
     2041 gaaactttcc accagcgcgt gctggaaagc catgtccata cgcaacaggc aattgatgcc
     2101 cgtcatgact gggccgctct gcgtgaaaaa gcgttgaatt ttggcgaggc tgagcaggcg
     2161 ctgctgacag gacacgcttt ccaccctgcg cctaagtctc atgaaccgtt taaccggcgg
     2221 gaggctgaac gctacctgcc tgatatggca ccccacttcc cactgcggtg gttttcggtg
     2281 gataaaacgc aaatcgccgg tgaaagtttg catctcaacc ttcaacagcg gctgacgcga
     2341 tttgccgcag agaatgcgcc tcagttactc aacgaattaa gtgacaacca atggctgttc
     2401 ccgttgcacc cgtggcaggg ggaatatctt ttgcagcagg ggtggtgcca ggcacttgtt
     2461 gctaaagggc tgattaaaga cttaggtgag gccggcacgt cgtggctgcc gaccacctct
     2521 tcccgttccc tctactgtgc caccagccgc gatatgatca agttctccct gagcgtacgg
     2581 ctgaccaact ccatccgtac tctgtccgtg aaagaagtga agcgtgggat gcgcctggca
     2641 cgcctggctc aaaccgacgg ctggcagatg ctacaggtcc gcttcccgac tttccgggta
     2701 atgcaggagg atggctgggc cgggctgctc gatcttaacg gcaacatcat gcaggaaagt
     2761 ctgtttgccc tgcgtgaaaa tctgctggtg gatcagccga aaagccagac taacgtactg
     2821 gtctccctga ctcaggccgc acctgatggc ggtgattcgc tgctggtttc ggcggtaaaa
     2881 cgcctgagcg atcgcctcgg tatcactgtg caacaggccg cccatgcatg ggtcgatgca
     2941 tactgtcagc aagtgctaaa gccgctgttt acggctgaag cggattacgg cctggtgctg
     3001 ctggcgcatc agcaaaatat tcttgtccag atgcttgggg atctgccggt cggatttatt
     3061 taccgtgact gtcagggcag cgcttttatg cctcacgcga cagactggct cgattctatt
     3121 ggcgaggcgc aggcggaaaa tattttcacc catgagcagt tgctgcgcta tttcccttat
     3181 tacctgctgg ttaactccac ttttgctgtg accgctgcgc tgggggctgc cgggctggac
     3241 agcgaatcga atctgatggc tcgtgtacga gcatcgctgg ctgaagtgcg tgatcaggtg
     3301 actcataaaa cctgtctcaa ctacgtgctg gaaagtccgt actggaacgt aaaaggtaac
     3361 tttttctgtt atctgaacga tcataacgag aacaccattg ttgacccttc ggtgatctat
     3421 ttcgatttcg ctaacccgct gcaggctcag gaggtctgaa tgtctgaggc aaacattatt
     3481 cacagcagat atggactgcg ctgtgaaaaa ctcgacaagc ccctgaatct tggctgggga
     3541 ctggacaata gcgcggtgtt gcactgtccc ggggagctgc cgacagggtg gctgtgcgat
     3601 gcgctggatc agatatttat cgccgcacca caactgtcag cagtggctct cccctgggcc
     3661 gaatggcgtg aggagccaca ggcgctgacg ctttttgggc aggtaaaaag cgacattatc
     3721 catcgtactg ccttctggca gttaccgtta tggttgagtt caccggcaaa ccgggcctcc
     3781 ggtgaaatgg tttttgatgc agagcgtgag atttatttcc cgcagcgccc accccgtcca
     3841 cagggtgagg tttaccgccg ttacgatcca cgtattcgca ggatgctgag tttccgcatt
     3901 gccgatcccg tttctgatgc agaacgtttc acccgctgga tgaatgatcc gcgcgttgag
     3961 tatttctggg agcaaagtgg ctcactggag gtacagaccg cctatctgga gcgccagctc
     4021 accggtaaac atgcattccc gctgattggg tgcttcgacg atcggccatt cagctatttc
     4081 gaaatctact gggcggcgga agaccgcatt ggtcgtcact attcgtggca gccctttgac
     4141 cgtggcctgc atctgctggt tggtgaacag caatggcgcg gggcccacta tgtgcaaagc
     4201 tggctgcgcg ggctgacaca ttacctgctg ctggatgagc cccgtacgca gcgcacagta
     4261 ctggagccac gcaccgataa ccagcgcctg ttccgccatc ttgagcctgc gggataccgg
     4321 acaattaaag agttcgactt cccacataag cgctcgcgca tggtgatggc ggatcgtcat
     4381 cacttcttca cggaggtcgg tctgtaatga atcacaagga ctgggatttt gttaaccgtc
     4441 ggctggtggc aaaaatgttg tctgagatgg agtatgagca ggttttccac gcggaatctc
     4501 agggcgatga ccactactgc attaacctgc cgggagcaca atggcgcttc atcgctgaac
     4561 gtggtatctg gggctggctg tggattgatg cccaaacgtt gcgctgcacg gacgaaccag
     4621 tactggcgca gacgctgctg atgcagctaa agccggtgct gtcaatgagt gatgccactg
     4681 ttgcagagca tatgcaggat ttgtatgcca cgctactggg cgacctgcaa ctgctgaagg
     4741 cccgtcgcgg actgagtgcc agtgacctga ttaatcttga tgccgatcgt ctgcaatgcc
     4801 tgctgagcgg tcatcctaaa ttcgttttta ataaaggtcg ccgtggctgg ggcaaagagg
     4861 cgctggaacg atatgcgcca gagtatacca acaccttcag actgcactgg ctggcggtaa
     4921 aacgtgaaca tatgatctgg cgctgcgata acgatctgga tattcagcag ttgttgactg
     4981 ccgcaatgga tccgcaggag tttacacgct tcagtcaggt ctggcaggaa aacgggctgg
     5041 atcacaactg gctaccgctg ccggtacatc cgtggcagtg gcagcaaaaa atcgccacag
     5101 acttcatcgc tgattttgtc gaaggcagga tggtgtctct cggcgagttt ggcgaccagt
     5161 ggctcgccca gcagtcgctg cgtaccctga ccaacgccag ccgccgggga gggctggata
     5221 tcaagctgcc gctgaccatc tacaacacct catgctaccg ggggatccct ggcagatata
     5281 tcgctgccgg accactggct tcacgctggc tgcaacaggt ttttgcgacc gacgccaccc
     5341 tggtgcaaag cggcgcagtg atccttggtg aaccggcggc aggctatgtg tcccatgaag
     5401 gctatgccgc gcttgcccgg gctccctatc gctaccagga aatgcttggt gttatctggc
     5461 gggagaatcc gtgccgctgg ctgaaaccgg atgaaagtcc tgttctgatg gcaacactga
     5521 tggagtgcga cgaaaacaat cagccgctgg caggcgcata tatcgaccgc tccggactgg
     5581 acgctgaaac ctggcttacg caattgttcc gggtggttgt ggttccgctg tatcacctgc
     5641 tttgccgcta cggtgtcgcg cttattgcac acggacaaaa tataacgctc gccatgaaag
     5701 agggggtacc acagcgtgtt ctgctgaaag acttccaggg cgatatgcgg ctggtgaaag
     5761 aagcgtttcc cgaaatggat tctttgcctc aggaggtgcg tgatgccaca tcccgtctga
     5821 gtgcggacta cttaatccat gatttgcaga cgggtcactt cgtgacagta ctgcgtttta
     5881 tttcgccact gatggttcgt cttggcgtac ctgaaaggcg attttatcaa ctgctggcag
     5941 cagtgttgag tgattacatg aacaaacatc cacaaatggc agagcgtttt gcgcttttct
     6001 cactcttcag gccacaaatc attcgcgtgg tgctgaaccc ggtaaaactg acctggccgg
     6061 acctggatgg cggcagtcgc atgctgccga attaccttga gaatctgcaa aatccgctgt
     6121 ggctggtaac tcaggaatat gaatcatgaa aaaaagtgtc gattttattg gtgtcgggac
     6181 agggccattt aatctcagca ttgctgcatt gtcacatcag atcgaagaac tgaactgtct
     6241 cttctttgac gaacatcctc atttttcctg gcatccgggt atgctggtac cggattgtca
     6301 tatgcagacc gtctttctga aagatctggt cagtgcagtt gcacctacaa atccctacag
     6361 ctttgttaac tatctggtga agcacaaaaa gttctatcgc ttccttacaa gcaggctacg
     6421 tacagtatcc cgtgaagagt tttctgacta tctccgctgg gctgctgaag atatgaataa
     6481 cctgtatttc agtcataccg ttgaaaatat tgatttcgac aaaaaaagtc gattgtttct
     6541 ggttcagacc agtcggggag aatattttgc ccgcaatatc tgccttggta caggaaaaca
     6601 accttattta ccaccctgtg tgaagcatgt gacacaatcc tgtttccatg ccagtgaaat
     6661 gaatcttcgt cggccggacc tgagtggaaa acggataacc gtggttggtg gaggacagag
     6721 tggtgcagac ctgttcctta atgcattacg cggggaatgg ggagaagcgg cggaaataaa
     6781 ctgggtctca cggcgtaata attttaacgc actggatgag gctgcttttg ctgatgagta
     6841 ttttacacct gaatatattt caggcttctc cggactgaag gaagatattc gccatcagtt
     6901 actggatgag cagaaaatga catcggatgg catcactgcc gattctttac tgaccattta
     6961 tcgtgagttg taccaccgtt ttgaagttct gagaaaacca agaaatatcc gtctgctacc
     7021 cagtcgctcg gtaataactc tggaaagtag tggtccgggc tggaggttat tgatggaaca
     7081 tcatctggat cagggcagag agagcctgga aagtgatgtg gtgattttcg ccacaggtta
     7141 ccgttctgca ttgccacaaa tacttccctc actgatgccc ttgatcacca tgcacgataa
     7201 gaacaccttt aaagtgcgtg atgacttcac tctggaatgg agtggcccga aagaaaataa
     7261 catctttgcg gtcaacgcca gcatgcaaac tcatggcatc gccgaacccc agctcagcct
     7321 gatggcctgg cgatctgcac gtattcttaa tcgcgtactg gggcgtgatt tattcgatct
     7381 cagtatgccg cccgcactga ttcagtggcg cagcggcagc cggaaaaaac cgcagccgga
     7441 ggctgcttct ttaactcact atacagcaaa tattcaggaa taacgatgat gcgcaaaaag
     7501 tatatgcccc gggctcttgg tccgctgctt cttgtcgtgc tgtcaccagc tgtcgcccag
     7561 caaaacgatg ataatgagat catagtgtct gccagccgca gcaatcgaac tgtagcggag
     7621 atggcgcaaa ccacttgggt tatcgaaaat gccgaactgg agcagcagat tcagggcggt
     7681 aaagagctga aagacgcact ggctcagtta atccccggcc ttgatgtcag cagccagagt
     7741 cgaaccaact acggtatgaa catgcgtggc cgcccgctgg ttgtcctgat tgacggtgtg
     7801 cgcctcaact cttcacgttc cgacagccga caactggact ctgtcgatcc ttttaatatc
     7861 gaccatattg aagtgatctc cggcgcgacg gccctgtacg gtggcgggag taccggaggg
     7921 ttgatcaaca tcgtgaccaa aaaaggtcag ccggaaacca tgatggagtt tgaggctggc
     7981 acaaaaagtg gctttaacag cagtaaagat cacgatgagc gcattgccgg tgctgtctcc
     8041 ggcggaaatg accatatctc cggacgtctt tccgtggcat atcagaaatt tggcggctgg
     8101 tttgacggta acggcgatgc caccctgctt gataacaccc agaccggcct gcagcactcc
     8161 aatcggctgg acatcatggg aaccggtacg ctgaacatcg atgaatcccg gcagcttcaa
     8221 ctgataacgc agtactataa aagtcaggga gacgacaatt acgggcttaa tctcgggaaa
     8281 ggcttttccg ccatcagcgg gagcagcaca ccatacgtca gtaaggggct gaattctgac
     8341 cgcattcccg gcactgagcg gcatttgatc agcctgcagt actctgacag tgatttcctg
     8401 ggacaggaac tggtcggtca ggtttactac cgcgatgagt cgttgcggta ctacccgttc
     8461 ccgacggtaa atgcgaataa acaggcgacg gctttctcct cgtcacagca ggataccgac
     8521 cagtacggca tgaaactgac tctgaacagc caactgatgg acggctggca aatcacctgg
     8581 gggctggatg ctgagcatga gcgctttacc tccaaccaga tgttcttcga tctggctcag
     8641 gcaagtgctt ccggagggct gaacaaccat aagatttaca ccaccgggcg ctatccgtca
     8701 tatgacatca ccaatctggc ggccttcctg caatccagct atgacattaa tgatattttt
     8761 accgttagcg gtggcgtacg ctatcagtat actgagaaca gggtagatga tttcatcgac
     8821 tacacgcagc aacagaagat tgctgccggg aaggcgatat ctgccgacgc cattcctggt
     8881 ggttcggtag attacgataa ctttctgttc aatgctggtc tgctgatgca catcaccgaa
     8941 cgtcagcagg catggttcaa tttttcccag ggggtggcat tgccggatcc ggggaaatat
     9001 tatggtcgcg gcatctatgg tgcagcagtg aacggccatc tttccctgac aaagagcgtg
     9061 aacgtcagcg acagtaagct ggaaggcgtg aaagtcgatt cttatgaact gggctggcgc
     9121 tttaccggtg acaacctgcg gactcaaatc gcggcatatt actcgctttc caataagagc
     9181 gtggaaagga ataaagatct gaccatcagt gtgaaggacg acaggcgccg tatttacggc
     9241 gtggaaggtg cggtggacta cctgatcccg gatactgact ggagtaccgg tgtgaacttc
     9301 aatgtgctga aaaccgagtc gaaagtgaac ggtcaatggc aaaaatatga cgtgaaggaa
     9361 tcaagtccat cgaaagcgac agcttacatt aactgggcgc cggaaccgtg gagtctgcgt
     9421 gtacagagca ccacttcttt cgacgtaagc gatgcagagg gtaacgatat taatggttac
     9481 actaccgtcg attttatcag tagttggcag cttccggtgg gaacactcag cttcagcgtt
     9541 gagaacctct tcgaccgtga ctataccact gtctggggac agcgtgcacc tctgtactac
     9601 agcccgggtt acggccctgc ttcactgtac gactacaaag gccggggccg aacctttggt
     9661 ctgaactact cagtgctgtt ctgacgggga tgcttttgca acaagggtat gctgtaaaca
     9721 acatggtcct tggtggccat gttgtttaca gccagtataa tatacagcct taacaagata
     9781 ttccgtctcc ggaatggact gttcaccact gaataacatt atttctgttt tatggatctt
     9841 tgactgaaat ttatcgcata tcctcatttc attgtccgtc tgaaaactaa ccttacaagt
     9901 aagcgtcgtc tcagcaccgt ctggcagatc ctgaaattcc tgagaggatg atctg
//
LOCUS       DADMJB010000157         9895 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.159, whole genome shotgun sequence.
ACCESSION   DADMJB010000157 DADMJB010000000
VERSION     DADMJB010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9895
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.159"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(55..1338)
                     /gene="aroA"
                     /locus_tag="JN078_003402"
     CDS             complement(55..1338)
                     /gene="aroA"
                     /locus_tag="JN078_003402"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HAY9042487.1"
                     /translation="MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNL
                     LDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPL
                     AAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGG
                     NVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQ
                     HYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRF
                     ADVLEKMGATICWGDDYISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNI
                     YNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFS
                     LVALSDTPVTILDPKCTAKTFPDYFEQLARISQAA"
     gene            complement(1409..2497)
                     /gene="serC"
                     /locus_tag="JN078_003403"
     CDS             complement(1409..2497)
                     /gene="serC"
                     /locus_tag="JN078_003403"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000057138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HAY9042488.1"
                     /translation="MAQIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGK
                     EFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYW
                     AASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAID
                     ETPDFGKDVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKA
                     NIACPSILDYSIFNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELL
                     YGVIDNSDFYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGM
                     RASIYNAMPLEGVKALTDFMVEFERRHG"
     gene            complement(2696..3388)
                     /locus_tag="JN078_003404"
     CDS             complement(2696..3388)
                     /locus_tag="JN078_003404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF421 domain-containing protein"
                     /protein_id="HAY9042489.1"
                     /translation="MKAFDLHRMAFDKVPFDFLGEVALRSLYTFVLVFLFLKMTGRRG
                     VRQMSLFEVLIILTLGSAAGDVAFYDDVPMVPVLIVFITLALLYRLVMWLMAHSEKLE
                     DLLEGKPVVIIEDGELAWSKLNNSNMTEFEFFMELRLRGVEQLGQVRLAILETNGQIS
                     VYFFEDDKVKPGLLILPSDCTQRYKVVPESADYACIRCSEIIHMKAGEKQLCPRCANP
                     EWTKASRAKRVT"
     gene            3518..5278
                     /locus_tag="JN078_003405"
     CDS             3518..5278
                     /locus_tag="JN078_003405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     accessory protein YcaO"
                     /protein_id="HAY9042490.1"
                     /translation="MTQTFIPGKDAALEDSIARFQQKLSDLGFQIEEASWLNPVPNVW
                     SVHIRDKECALCFTNGKGATKKAALASALGEYFERLSTNYFFADFWLGETIANGPFVH
                     YPNEKWFPLTENDDVPEGLLDDRLRAFYDPENELTGSMLIDLQSGNEDRGICGLPFTR
                     QSDNQTVYIPMNIIGNLYVSNGMSAGNTRNEARVQGLSEVFERYVKNRIIAESISLPE
                     IPADVLARYPAVVEAIETLEAEGFPIFAYDGSLGGQYPVICVVLFNPANGTCFASFGA
                     HPDFGVALERTVTELLQGRGLKDLDVFTPPTFDDEEVAEHTNLETHFIDSSGLISWDL
                     FKQDADYPFVDWNFSGTTEEEFATLMAIFNKEDKEVYIADYEHLGVYACRIIVPGMSD
                     IYPAEDLWLANNSMGSHLRETILSLPGSEWEKEDYLNLIEQLDEEGFDDFTRVRELLG
                     LATGSDNGWYTLRIGELKAMLALAGGDLEQALVWTEWTMEFNSSVFSPERANYYRCLQ
                     TLLLLAQEEDRQPLQYLNAFVRMYGADAVEAASAAMSGEAAFYGLQPVDSDLHAFAAH
                     QSLLKAYEKLQRAKAAFWAK"
     gene            5684..6541
                     /gene="focA"
                     /locus_tag="JN078_003406"
     CDS             5684..6541
                     /gene="focA"
                     /locus_tag="JN078_003406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter FocA"
                     /protein_id="HAY9042491.1"
                     /translation="MKADNPFDLLLPAAMAKVAEEAGVYKATKHPLKTFYLAITAGVF
                     ISIAFVFYITATTGTGTMPFGMAKLVGGICFSLGLILCVVCGADLFTSTVLIVVAKAS
                     GRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKVHHT
                     FIEAVCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMIP
                     MGIVIRDFASPEFWTAVGSAPENFSHLTVMNFITDNLIPVTIGNIIGGGLLVGLTYWV
                     IYLRENDHH"
     gene            6596..8878
                     /gene="pflB"
                     /locus_tag="JN078_003407"
     CDS             6596..8878
                     /gene="pflB"
                     /locus_tag="JN078_003407"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HAY9042492.1"
                     /translation="MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFL
                     AGATEATTTLWDKVMEGVKLENRTHAPVDFDTAVASTITSHDAGYINKQLEKIVGLQT
                     EAPLKRALIPFGGIKMIEGSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRC
                     RKSGVLTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKLAQFTSLQADLENGVNLEQTI
                     RLREEIAEQHRALGQMKEMAAKYGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMS
                     FGRTSTFLDVYIERDLKAGKITEQEAQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIW
                     ATESIGGMGLDGRTLVTKNSFRFLNTLYTMGPSPEPNMTILWSEKLPLNFKKFAAKVS
                     IDTSSLQYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGG
                     VDEKLKMQVGPKSEPIKGDLLNYDEVMERMDHFMDWLAKQYITALNIIHYMHDKYSYE
                     ASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAIDFEIEGEYPQ
                     FGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPTQSVLTITSNVVYGKKTGNTPDGR
                     RAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVR
                     KTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRF
                     NSLTKEQQQDVITRTFTQSM"
     gene            9070..9810
                     /gene="pflA"
                     /locus_tag="JN078_003408"
     CDS             9070..9810
                     /gene="pflA"
                     /locus_tag="JN078_003408"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase 1-activating protein"
                     /protein_id="HAY9042493.1"
                     /translation="MSVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWD
                     THGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHT
                     CLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANK
                     NVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYK
                     LDGVKPPKKETMERVKGILEQYGHKVMF"
BASE COUNT         2534 a         2488 c         2355 g         2518 t
ORIGIN      
        1 atgtgccgac gttttgataa agaaagattt ggctatttat tgcccgttgt tcattcaggc
       61 tgcctggcta atccgcgcca actgctcgaa ataatccgga aatgttttgg ccgtacattt
      121 gggatcaaga atcgtcactg gtgtatctga caacgccacc agcgagaaac acatcgccat
      181 ccggtgatca ttgtatgtcg cgatctcggc aaagttcagt ttttccggtg gagtgatacg
      241 aatgtaatcg tgcccctctt ctacttccgc accgacttta cgcagttctg ttgccatcgc
      301 aaacaggcga tcggtttctt taacacgcca gttatagata ttgcgcagcg tggtggtgcc
      361 ttttgcaaat aacgccgccg tggcaatggt catcgccgca tcgggaatat ggttcatatc
      421 catatcaata gcgttcagtt caccacgcgt gcaggaaata taatcatcgc cccagcaaat
      481 ggtcgcgccc attttttcca gcacatcagc aaagcgaata tcaccctgca tactgttacg
      541 tccaataccg gtcactttta cagtgccgcc tttgattgct gctgctgcca gaaagtaaga
      601 agccgaagat gcatcgcctt cgaccaaata agtacccgga gactgataag actgtccgcc
      661 ttttacgaca aattgttgat agtgctgatt ttcaatttca acaccaaacg tcttcatcag
      721 attgagtgtg atgtcgatat aaggtttaga aaccagatcg cctttaatac gaatcaccgt
      781 atcttccggc gcaagaggcg cagtcattaa cagtgcggtg aggaattggc tggaaacgga
      841 gccatcaacg tcaacgttgc cgccagtaaa gccgccctgt aaacgcaacg gcggataatt
      901 ttcttgttcc aggtaagtga tcttcgcccc gcccaggcgc agcgcatcca ccagatgacc
      961 aatcgggcgt tctttcatac gcggctcacc ggtcagcaca atatcattgc tacccagaca
     1021 aagagctgcc gccagcggac gcattgccgt tccggcgtta ccgaggaaca actccagggc
     1081 accttctgcg tgtaatggac cgccgttacc gataatttcg caacgcgtac gatcggctga
     1141 aagcgtatag cttaccccta acgctgttaa tgcattcagc atatggcgca cgtcatcgct
     1201 atccagcaga ttggttaata ctgttttgcc gtgtgctaat gccgccagca ataaagcgcg
     1261 gttagaaacg ctcttggaac cgggcagatt aatagtgcca tcgacacgag cgatgggttg
     1321 taacgtcagg gattccatga actcaactct ctacaacaga aataaaaacc ccacaggctg
     1381 gctgtgggga ttaagcaaaa tttcggcatt aaccgtgacg gcgttcgaac tcaaccatga
     1441 agtctgtcag cgctttaacg ccttccagcg gcatggcgtt ataaatagaa gcgcgcattc
     1501 cgccgaccac acggtgacct ttcagtgcat gaaggccagc agcaaaagac tcttcaagga
     1561 acaatttgtc aagcgcactg tccgccaact ggaacggcac gttcatccgc gaacggttag
     1621 ctttcgccac gtcattgcgg tagaaatcgc tgttatcaat caccccatat agcagttctg
     1681 ctttttgctg attgatttta tccatttcag ctacaccgcc gttcgctttc agccatttaa
     1741 agaccagacc agatagatac caggcaaatg tcggcggcgt gttaaacatg gagccgttat
     1801 cgttgaagat ggaataatcc agtatcgacg gacacgcgat attcgctttg cccagcaaat
     1861 cttcacgaac gatgacgatt gtcaggccag ccgggccgat atttttctgc gcgccagcgt
     1921 aaatcacgcc ataacggctg acgtcaatcg gacgggaaag aatggttgaa gagaagtcgg
     1981 cggcgaccac cacatctttg ccgaagtctg gcgtttcgtc gatggcgata ccgtcgatgg
     2041 tttcattcgg gcagtaatgc atataagcag cattatcaga gagttgccat tcacgcattg
     2101 gcttaaccgc gcgcagacca tcaacagtca ctttggcgtc aaagacatta ggcgtgcagt
     2161 attttttcgc ttctttaatg gcacttgccg cccagtaacc ggcatcaaca taatctgcgg
     2221 tggttttatc accgagaata ttcagcggta ccgcagcaaa ctgaccgcga ccaccgccat
     2281 ggcagaataa taccttgtag ttggagggga cattaagaag atcgcgaaaa tccttctcgg
     2341 cttcctctgc aacctgaatg aactctttgc cacggtgact cacttccatc accgacgtac
     2401 caagaccgtt ccagtcgcgc agttcctgtt gagcctgttt aagcacctct gccggtagca
     2461 ttgccggacc agaactaaaa ttgaagattt gagccatttc ccctcaccac gttgcgttgc
     2521 tattaacccg cggtcaatcg attgcgacca caggtaatac attattcctg tggctatcgg
     2581 ttttatcatt cagtgacaca catcgcaatg agtaaaaccg ttgagggcaa aaatgaggct
     2641 tgcatcacac aaaagaatct ctcggattat tagcaaaaag ccgatgtttt tactgtcagg
     2701 tcacccgttt tgcccgactt gccttcgtcc attctggatt tgcacagcgc ggacataatt
     2761 gtttttcccc cgctttcata tgaatgattt cactacaacg aatacaggca tagtccgccg
     2821 actccggcac cactttgtaa cgctgcgtac aatcactggg taaaataagt aaacccggtt
     2881 tcaccttgtc atcttcaaag aaatagacac tgatttgccc gttggtttcg agaatcgcca
     2941 gacgtacctg ccccagctgc tccacgccac gcaatcgtag ctccataaag aactcaaatt
     3001 ccgtcatgtt ggagttattg agtttcgacc aggccagctc gccatcttca ataataacaa
     3061 ccggcttacc ttccagtaga tcttccagtt tttcactgtg cgccatcaac cacattacca
     3121 ggcggtataa caacgccaga gtgataaaga cgataagtac cggcaccatc ggcacatcat
     3181 cataaaacgc cacatctccc gccgctgaac ccagcgtgag aatgattaac acttcaaaca
     3241 gcgacatctg tcgcacaccg cgtcttccgg tcattttgag gaacaaaaaa accagtacaa
     3301 aggtataaag actacgtagt gcaacttcgc caaggaaatc aaaaggcact ttatcaaatg
     3361 ccatacggtg gagatcgaac gccttcattt ttatgctctt atcgtggttt attcgctaaa
     3421 agcatagtca acagttcatc ggcatggcgg cggtgatagc gcctttgaga taaaacccgt
     3481 attattgcgc gctttccgta cgactaaagt gattttcatg acgcaaacat ttatccccgg
     3541 caaagatgcc gctctggaag attccatcgc tcgcttccag caaaaacttt cagacctcgg
     3601 ctttcagatt gaagaggcct cctggctgaa tcctgtgcct aacgtctggt ctgtacatat
     3661 tcgcgacaaa gagtgcgcac tgtgttttac caacggtaaa ggcgcaacca aaaaagcggc
     3721 gctggcttct gcacttggtg aatatttcga gcgtctctca accaactact tttttgctga
     3781 tttctggctg ggcgaaacca tcgccaacgg tccgttcgtg cattatccca acgaaaaatg
     3841 gttcccactg accgaaaatg acgatgtgcc agaaggacta ctcgatgacc gtctgcgcgc
     3901 gttttatgat ccggagaatg aactgaccgg cagcatgctg attgacctac aatccggtaa
     3961 cgaagatcgt ggtatttgcg gcctgccgtt tacgcgtcag tccgacaatc agaccgttta
     4021 tattccgatg aatatcattg gtaacctgta cgtctccaac ggtatgtccg caggtaatac
     4081 ccgcaacgaa gcacgcgttc agggattgtc tgaagttttc gaacgctacg tgaaaaaccg
     4141 cattattgct gaaagcatca gcctgccaga gatcccggca gacgtgctgg cgcgttaccc
     4201 agcggtggtt gaagcgatcg aaacactgga agcagaaggt ttcccgatct tcgcatatga
     4261 tggttccctt ggcggccagt atccggtgat ttgcgtggta ctgttcaatc ctgctaacgg
     4321 tacctgcttt gcctctttcg gtgcgcatcc tgattttggc gtagcactgg aacgtaccgt
     4381 gaccgagctg ctgcaaggtc gtggcctgaa agatttggat gtgtttactc cgccaacctt
     4441 cgatgatgaa gaagtcgctg aacataccaa cctcgaaacg cactttatcg attccagcgg
     4501 tttaatctcc tgggacctgt tcaagcagga tgccgattat ccgtttgtgg actggaattt
     4561 ctccggcacc acggaagaag agtttgctac gctgatggct atcttcaaca aagaagataa
     4621 agaagtttat attgccgatt acgagcatct gggcgtttat gcttgccgta ttatcgtgcc
     4681 tggcatgtcc gatatttatc cggctgaaga tctgtggctc gcgaataaca gtatgggcag
     4741 ccatttacgt gaaacgattc tttcgctacc aggcagcgag tgggaaaaag aagattacct
     4801 gaacctcatc gagcaactgg atgaagaagg ttttgatgac tttacccgcg tgcgtgagct
     4861 gttgggtctg gcgaccgggt cggataacgg ttggtacacc ctgcgtatcg gtgaattaaa
     4921 agccatgctg gcgctggctg gtggcgatct ggaacaggct ctggtctgga ccgaatggac
     4981 gatggagttt aactcatcag tatttagtcc ggaacgcgcc aactattatc gctgcctgca
     5041 aacgttgtta ttactggcac aggaagaaga tcgccagccg ctgcaatatc tgaatgcgtt
     5101 tgttcgcatg tacggcgcag atgccgtgga agccgccagt gcggcaatga gcggcgaagc
     5161 ggcgttttac ggcctgcaac cggtagatag cgatctgcac gcgtttgctg cacatcagtc
     5221 gttgttgaag gcctacgaaa agctgcagcg cgccaaagca gcattctggg caaaataaaa
     5281 tcaaatagcc tacgcaatgt aggcttaatg attagtctga gttatattac ggggcgtttt
     5341 tttaatgccc cgctttacat atatttgcat taataaaata attgtaatta taaggttaaa
     5401 tatcggtaat ttgtatttaa taaatacgat cgatattgtt actttattcg cctaatgctc
     5461 ccttttaatt aactatttta gcggaggatg cggaaaaaat tcaactcatt tgttaatttt
     5521 taaaatttat ttttatttgg ataatcaaat atttactccg tatttgcata aaaaccatgc
     5581 gagttacgga cctataagcc aggcgagata tgatctatat caatttctca tctataatgc
     5641 tttgttagta tctcgtcgcc gacttaataa agagagagtt agtgtgaaag ctgacaaccc
     5701 ttttgatctt ttacttcctg ctgcaatggc caaagtggcc gaagaggcgg gtgtctataa
     5761 agcaacgaaa catccgctta agactttcta tctggcgatt accgccggtg ttttcatctc
     5821 aatcgcattc gtcttctata tcacagcaac cactggcaca ggcacaatgc ccttcggcat
     5881 ggcaaaactg gttggcggca tttgcttctc tctggggctg attctttgtg ttgtctgcgg
     5941 agctgatctc tttacttcca ccgtgttgat tgttgttgct aaggcgagtg ggcgcatcac
     6001 ctggggtcag ttggcgaaaa actggctaaa tgtctatttt ggcaacctgg tcggcgcact
     6061 gctgtttgta cttttaatgt ggctttccgg cgagtatatg accgcaaatg gtcaatgggg
     6121 actaaacgtc ctacaaaccg ccgaccacaa agtgcaccat acttttattg aggccgtctg
     6181 tcttggtatc ctggcaaacc tgatggtatg tctggcagta tggatgagtt attctggccg
     6241 cagcctgatg gacaaagcgt tcattatggt gctgccggtc gcgatgtttg ttgccagcgg
     6301 ttttgagcac agtatcgcaa acatgtttat gatcccgatg ggtattgtaa tccgcgactt
     6361 cgcatctccg gaattctgga ccgctgtcgg ttctgcaccg gaaaattttt ctcacctgac
     6421 cgtgatgaac ttcatcactg ataacctgat cccggttacg atcggtaata ttatcggcgg
     6481 tggtttgttg gttgggttga catactgggt catttacctg cgtgaaaacg atcaccatta
     6541 atggttgtcg aagtacgcag taaataaaaa atccacttaa gaaggtaggt gttacatgtc
     6601 cgagcttaat gaaaagttag ccacagcctg ggaaggtttt accaaaggtg actggcagaa
     6661 tgaagtaaac gtccgtgact tcattcagaa aaactacact ccgtacgagg gtgacgagtc
     6721 cttcctagct ggcgctactg aagcgaccac caccctgtgg gacaaagtaa tggaaggcgt
     6781 taaactggaa aaccgcactc acgcgccagt tgactttgac accgctgttg cttccaccat
     6841 cacctctcac gacgctggct acatcaacaa gcagcttgag aaaatcgttg gtctgcagac
     6901 tgaagctccg ctgaaacgtg ctcttatccc gttcggtggt atcaaaatga tcgaaggttc
     6961 ctgcaaagcg tacaaccgcg aactggatcc gatgatcaaa aaaatcttca ctgaataccg
     7021 taaaactcac aaccagggcg tgttcgacgt ttacactccg gacatcctgc gttgccgtaa
     7081 atctggtgtt ctgaccggtc tgccagatgc atatggccgt ggccgtatca tcggtgacta
     7141 ccgtcgcgtt gcgctgtacg gtatcgacta cctgatgaaa gacaaactgg cacagttcac
     7201 ttctctgcag gctgatctgg aaaacggcgt aaacctggaa cagactatcc gtctgcgcga
     7261 agaaatcgct gaacagcacc gcgctctggg tcagatgaaa gaaatggctg cgaaatacgg
     7321 ctacgacatc tctggtccgg ctaccaacgc tcaggaagct atccagtgga cttacttcgg
     7381 ctacctggct gctgttaagt ctcagaacgg tgctgcaatg tccttcggtc gtacctccac
     7441 cttcctggat gtgtacatcg aacgtgacct gaaagctggc aagatcaccg aacaagaagc
     7501 gcaggaaatg gttgaccacc tggtcatgaa actgcgtatg gttcgcttcc tgcgtactcc
     7561 ggaatacgat gaactgttct ctggcgaccc gatctgggca accgaatcta tcggtggtat
     7621 gggcctcgac ggtcgtaccc tggttaccaa aaacagcttc cgtttcctga acaccctgta
     7681 caccatgggt ccgtctccgg aaccgaacat gaccattctg tggtctgaaa aactgccgct
     7741 gaacttcaag aaattcgccg ctaaagtgtc catcgacacc tcttctctgc agtatgagaa
     7801 cgatgacctg atgcgtccgg acttcaacaa cgatgactat gctatcgctt gctgcgtaag
     7861 cccgatgatc gttggtaaac aaatgcagtt cttcggtgcg cgtgcaaacc tggcgaaaac
     7921 catgctgtac gcaatcaacg gcggcgttga cgaaaaactg aaaatgcagg ttggtccgaa
     7981 gtctgaaccg atcaaaggcg atctcctgaa ctacgatgaa gtgatggagc gcatggatca
     8041 cttcatggac tggctggcta aacagtacat cactgcactg aacatcatcc actacatgca
     8101 cgacaagtac agctacgaag cctctctgat ggcgctgcac gaccgtgacg ttatccgcac
     8161 catggcgtgt ggtatcgctg gtctgtccgt tgctgctgac tccctgtctg caatcaaata
     8221 tgcgaaagtt aaaccgattc gtgacgaaga cggtctggct atcgacttcg aaatcgaagg
     8281 cgaatacccg cagtttggta acaatgatcc gcgtgtagat gacctggctg ttgacctggt
     8341 agaacgtttc atgaagaaaa ttcagaaact gcacacctac cgtgacgcta tcccgactca
     8401 gtctgttctg accatcactt ctaacgttgt gtatggtaag aaaactggta acaccccaga
     8461 cggtcgtcgt gctggcgcgc cgttcggacc gggtgctaac ccgatgcacg gtcgtgacca
     8521 gaaaggtgct gtagcgtctc tgacttccgt tgctaaactg ccgtttgctt acgctaaaga
     8581 tggtatctcc tacaccttct ctatcgttcc gaacgcactg ggtaaagacg acgaagttcg
     8641 taagaccaac ctggctggtc tgatggatgg ttacttccac cacgaagcat ccatcgaagg
     8701 tggtcagcac ctgaacgtta acgtgatgaa ccgtgaaatg ctgctcgacg cgatggaaaa
     8761 cccggaaaaa tatccgcagc tgaccatccg tgtatctggc tacgcagtac gtttcaactc
     8821 gctgactaaa gaacagcagc aggacgttat tactcgtacc ttcactcaat ctatgtaatt
     8881 agatttgact gaaatcgtac agtaaaaagc gtacaataaa ggctccacga aagtggggcc
     8941 ttttttagca cgagagcctt ttttgtcagc tatctatact ttaaggtgac tgccaaaaca
     9001 gactcgacgt agccttcgag ctgcgcacca acacggcctc agatgggcca catctggaga
     9061 aacaccgcaa tgtcagttat tggtcgcatt cactcctttg aatcctgtgg aaccgtagac
     9121 ggcccgggta ttcgctttat cacctttttc cagggctgcc tgatgcgctg cctgtattgt
     9181 cataaccgcg acacctggga cacgcatggc ggtaaagaag ttaccgttga agatttgatg
     9241 aaggaagtgg tgacctatcg ccactttatg aacgcttccg gcggcggcgt taccgcatcc
     9301 ggcggtgaag caatcctgca agctgagttt gttcgtgact ggttccgcgc ctgcaaaaaa
     9361 gaaggcattc atacctgtct ggacaccaac ggttttgttc gtcgttacga tccggtgatt
     9421 gatgaactgc tggaagtaac cgacctggta atgctcgatc tcaaacagat gaacgacgag
     9481 atccaccaaa atctggttgg agtttccaac caccgcacgc tggagttcgc caaatatctg
     9541 gcgaacaaaa atgtgaaggt gtggatccgc tacgttgttg tcccaggctg gtctgacgat
     9601 gacgattcag cgcatcgcct cggtgaattt acccgtgata tgggcaacgt tgagaaaatc
     9661 gaactcctcc cctaccacga gctgggcaaa cacaaatggg tggcaatggg tgaagagtac
     9721 aaactcgacg gtgttaaacc acctaagaaa gagaccatgg aacgcgtgaa aggcattctt
     9781 gagcagtacg gtcataaggt aatgttctaa tttccccgta aagcggcaac tttattgagt
     9841 tgccgctttt ttattccgcg cttcattctg ctacagtgtt tttaacacat tttat
//
LOCUS       DADMJB010000158         9650 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.160, whole genome shotgun sequence.
ACCESSION   DADMJB010000158 DADMJB010000000
VERSION     DADMJB010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9650)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9650)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9650
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.160"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(1..1093)
                     /gene="fdeC"
                     /locus_tag="JN078_003409"
                     /pseudo
     CDS             complement(1..1093)
                     /gene="fdeC"
                     /locus_tag="JN078_003409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308363.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="intimin-like adhesin FdeC"
     gene            1646..1735
                     /locus_tag="JN078_003410"
                     /pseudo
     CDS             1646..1735
                     /locus_tag="JN078_003410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308358.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
     gene            2209..2310
                     /locus_tag="JN078_003411"
     CDS             2209..2310
                     /locus_tag="JN078_003411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042494.1"
                     /translation="MKENKVQQISHKLINIVVFVAIVEYAYLFLHFY"
     gene            2671..2937
                     /locus_tag="JN078_003412"
     CDS             2671..2937
                     /locus_tag="JN078_003412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308354.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HAY9042495.1"
                     /translation="MMKPNIHPEYRTVVFHDTSVDEYFKIGSTIKTDREIELDGVTYP
                     YVTIDVSSKSHPFYTGKLRTVASEGNVARFTQRFGRFVSTKKGS"
     gene            2937..3077
                     /gene="rpmJ"
                     /locus_tag="JN078_003413"
     CDS             2937..3077
                     /gene="rpmJ"
                     /locus_tag="JN078_003413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HAY9042496.1"
                     /translation="MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQGRKK
                     KR"
     gene            complement(3112..3339)
                     /locus_tag="JN078_003414"
                     /pseudo
     CDS             complement(3112..3339)
                     /locus_tag="JN078_003414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414829.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            4162..4704
                     /gene="ecpR"
                     /locus_tag="JN078_003415"
                     /gene_synonym="matA"
     CDS             4162..4704
                     /gene="ecpR"
                     /locus_tag="JN078_003415"
                     /gene_synonym="matA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308351.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECP biosynthesis operon DNA-binding
                     transcriptional regulator EcpR"
                     /protein_id="HAY9042497.1"
                     /translation="MECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKD
                     FVFINLNTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAG
                     LSRDIRKELAYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV
                     YTHRRNAEAKLYSKIYKLVQ"
     gene            4730..5365
                     /gene="ecpA"
                     /locus_tag="JN078_003416"
                     /gene_synonym="matB"
     CDS             4730..5365
                     /gene="ecpA"
                     /locus_tag="JN078_003416"
                     /gene_synonym="matB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000150122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="common pilus major fimbrillin subunit EcpA"
                     /protein_id="HAY9042498.1"
                     /translation="MTHWDITSSIQLGKKCNEKKVLAIALVTVFTGMGVAQAADVTAQ
                     AVATWSATAKKDTTSNLVVTSLGSLAFQYAEGIKGFNSQKGLFDVAIEGDSTATAFKL
                     TSRLITNTLTQLDTSGSTLNVGVDYNGAAVEKTGDTVMIDTANGVLGGNLSPLANGYN
                     ASNRTTAQDGFTFTIISGTTNGTTAVTDYSTLPEGIWSGDVSVQFDATWTS"
     gene            5423..6091
                     /locus_tag="JN078_003417"
     CDS             5423..6091
                     /locus_tag="JN078_003417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone EcpB"
                     /protein_id="HAY9042499.1"
                     /translation="MKKHLLPLALLFSGISPAQALDVGDISSFMNSDSSTLSKTIKNS
                     TDSGRLINIRLERLSSPLDDGQVISMDKPDELLLTPASLLLPAQASEVIRFFYKGPAD
                     EKERYYRIVWFDQALSDAQRDNANRSAVATASARIGTILVVAPRQANYHFQYANGSLT
                     NTGNATLRILAYGPCLKAANGKECKENYYLMPGKSRRFTRVDTADNKGRVALWQGDKF
                     IPVK"
     gene            6117..8636
                     /locus_tag="JN078_003418"
                     /pseudo
     CDS             6117..8636
                     /locus_tag="JN078_003418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414825.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            8626..>9650
                     /gene="ecpD"
                     /locus_tag="JN078_003419"
     CDS             8626..>9650
                     /gene="ecpD"
                     /locus_tag="JN078_003419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial adhesin EcpD"
                     /protein_id="HAY9042500.1"
                     /translation="MRVNLLITMIIFALIWPVTALRAAVSKTTWADAPAREFVFVENN
                     SDDNFFVTPGGALDPRLTGANRWTGLKYTGSGTIYQQSLGYIDNGYNTGLYTNWKFDM
                     WLENSPVSSPLTGLRCINWYAGCNMTTSLILPQTTDASGFYGATVTSGGAKWMHGMLS
                     DAFYQYMQQMPVGSSFTMTINACQTSVNYDASSGARCKDQASGNWYVRNVTHTKAANL
                     RLINTHSLAEVFINSDGVPTLGEGNADCRTQTIGSLSGLSCKMVNYTLQTNGLSNTSI
                     HIFPAIANSSLASAVGAYDMQFSLNGSSWKPVSNTAYYYTFNEMKSADSIYVFFSSNF
                     FKQMVNLG"
BASE COUNT         2627 a         2368 c         2255 g         2400 t
ORIGIN      
        1 caatacggat cacttcagat ttgcggtact caagaacgat gttgttatta cgctcaacca
       61 ggtcatagcg gctgcctgcc agcattcgac gctcgcgaat gctgtctgta tcgagttgtt
      121 tctccagagg ttcgccaatc cgataattaa cttccaggcc aaagcgagtg tcattctcac
      181 cactcttgcc ctgcttatgc ccggcactca gggtcagaag aggcacaggc gtgtaattca
      241 cttcagcgga aatcgcatgt ggatctttct ggcgtttatc tttgccaaac agcccaactt
      301 catcgccata atactgctca tacatcaggc ttgcgccaag ctgcggtcag gcgggtaaat
      361 agccctcagc acgaatatcc cagccattcg ccgggcgttc ctgataatcc tcaatatccg
      421 gcgatttttt ccagccagaa gcccgaatat aaccattggc gctcagtttc agataatcgc
      481 gccagtattc cgcaccaaca ccaatgcggg tatgactacg ggataaatca tggtcgataa
      541 aggtgttcac cccccccatt cagtcatttc ctgaaaaatg acgccagcca aaaccaatat
      601 ttgactgagt acgatcgtct gtacgatgta ttgccccctg agtgaacaac atatttgtcg
      661 gcgtatcata aatcggataa agcatttcca gcgaagaatc cttcagcgag aaatctttat
      721 cgacattcag tttgacgcgc gctgtaccat atttcccgag ccactcctgt atttcctggt
      781 tagctttagc ggtggccatt ccggtaataa aattacgtgt cgcatcgcta tctggctgac
      841 tgcttaaaaa tgtcccggca tttgcggcaa acgacgcgac atttttctcc acgttattat
      901 cagcagttac cgtagtattt cccatgctca accgtggctg aaccgcatgc tgcgcacgtg
      961 ccgccattac tggggtaaag gtgacagcga gtggaaaaag aacctgaaca gagatatttg
     1021 cccacgccac gcagcgggcc agaactgaat aacgaaatcg tggttgttta tgacctgttt
     1081 tataacgtga cattgagata atttcctgat gaacgaatta acgaacatag gcagacacaa
     1141 ataatggcgt ctgcttgtca gaaaaaccgg ggatttcccg gtttcctttt ccgcagaaaa
     1201 ggaaatacct ttatgtaaga aagtgcaccg ccacctgata tatccagtgt ctgtagccac
     1261 tcatcaggtg gttgggcgcg ggattatatt tttatttatg ggtaaaaatt tagctttttg
     1321 tgcaagtcat taaatagata cctaagttat atttcttact ctgcggacag tgaataattc
     1381 attattcaga ctgaataata atgacctgcc tttaattagc aactattgga aatacgtcga
     1441 agtaggtata tacgccagga taaaccgata tatttattat ggatattcat tttccttcat
     1501 cggactgtaa attgcgggga tatcgaactt acactactca tcgcaacact caaacagatt
     1561 tatgaatttc gttcataacc cctgacaaat cctgccgtct aatcgagctt ttccctttac
     1621 gttatgcttc tcatgaacga gaacacaact tattcatgaa ttaaccattc cggataaact
     1681 atggaatcaa attcaggcat cgaaaggaac tggctggttt ccgttaatag attaaatatc
     1741 tattactctc ccgagagtaa aactatcaaa tcaatgagta accgatacag cctcacaaat
     1801 tctttcagat aattaacccg tcactgcggc acgttctctc gtaaggcgtg cctgcagtgt
     1861 aatccagtat gtatccggca tagttgacgg tttaatagaa ctcaattcct ctccctggtc
     1921 accaacaacg atatcttgta taacacccca ggagatacga cattatgatg agatgcgata
     1981 tgctcctcag caccaatcaa cgccaggact gggccagtct tgagatcaga ctcattcccg
     2041 ggactgactt cagtcgacat atatcaatga cgttggtgca ataaaagata gccgatgtaa
     2101 tacatctatt caaatttgtg atacatgtca aaaaactggt tgaccaaact cgttatttat
     2161 ataagggcac ttacgaagtg cgctcttttt taaagcgagg aagtaccaat gaaagagaat
     2221 aaagtacaac aaatcagtca taaactaatt aatatcgttg tttttgtcgc aattgtagaa
     2281 tacgcctatt tatttctcca tttctattaa taacggcaat aaactgttca cttcagtgat
     2341 atttaaaata tgcattctct ccctttttgt aagtaattat tatatccgtg ggagaggaat
     2401 acacgctgtc aggtaatcaa tcatactgcg ataaatcatc ggccagtaaa gtggagataa
     2461 cctccattgt cgaaaaatcc atactctcag cgaaaccatc atcaatcact catccaggcg
     2521 tttatgggag cgtcgccaac ggctgttaac aatgccagac ttccccgttg cggaaattcc
     2581 acataccact aatggtcaca gggattgggt gttgaaatga tccggatgag catgtatctt
     2641 tatggttatg ctataacata acaggtaaaa atgatgaagc ccaatatcca tcctgagtat
     2701 cgtactgtgg tgttccacga caccagtgtt gatgagtact ttaaaatcgg ctcgactatc
     2761 aaaacagacc gtgagattga gctggatggc gtaacgtatc cgtacgtgac aattgatgtc
     2821 tcttctaaat cgcacccgtt ctatacaggg aagctgagaa cagtggcatc agaaggaaat
     2881 gttgcacgat tcacccaacg ttttggtcgt tttgttagca cgaaaaaggg gtcgtgatga
     2941 aagttcttaa ctctctgcgt accgcaaaag aacgccatcc agactgtcag attgtgaagc
     3001 gaaaaggacg gctatatgtg atttgtaaat ctaatccacg ttttaaggcc gttcaggggc
     3061 gtaagaaaaa acgttgattc aaaattcgac ggattaacga tatttgtctg attaataatc
     3121 agatcggatt aatgttggtg tgtttataac accaacatta attttcctgg ggatatattc
     3181 ttcctgttca tttgaggcca actgcctgac gtttctctac gaatattcca ttatcttaat
     3241 gttgacttgt tgaccagctt cgcccctgta tgctggcatc aactctcttt tagactgaac
     3301 acgccactca gtctcctccc tttgcggcgc agcctgcatt ttcactcaaa ctgttaagat
     3361 gataaatgtg gtaaatctgt tggtactaac ataaaaacgt ttacgccaca ggaacagtct
     3421 gatccaccgg taaccccgtc gccgacgttc gagtgccagt tagagtaacg cgcacagata
     3481 actgcactca gtgccctgac aaagaggcca tcgttcctgt gacagctggc agccttcgtt
     3541 taacttcact taatctggct cttgagggct taccgaacag atgacgtaca tacgcccgtt
     3601 caattttcca tcacttattg taatgaacac ctataaccat tttgtgcggc atgttaatcc
     3661 attaaaattt cttactgatt ggcaaatcat cttcaatgac agctcattat agttttatat
     3721 tctatccctt acccttaaaa cttgtttttt tactagtcca tcacacagcg cattaagact
     3781 attcctaaca cttcagggca aagttcctga ccaatataaa atgcaagtaa gaattgaacg
     3841 ttatattgcc aataacctta tgaaaccaaa tgtctttttc ttcttatcaa aaaagcaata
     3901 ttttcagttt ttctaaatat tgacttaacc attgaattcc ttttccgttc acatattgac
     3961 actcatcgaa aaaaaaacat aaatttaagc ccaatcgaaa ataattaaac ttaatctcgt
     4021 ttaaccttta ttgatatgta ctacgtatct tatttacttc cggtttacta aggaaactga
     4081 atgcacctgt aaaaattaca ggtttggaaa gtagtgacat ggcaaagtga ttacagtagg
     4141 gactatgagg ttaaaaacca tatggaatgt caaaaccgtt ctgataaata catctggtct
     4201 ccccatgacg cctacttcta taaaggacta tctgaactga ttgtggatat cgacagatta
     4261 atttatctgt cgttggagaa aattagaaaa gatttcgtgt ttatcaatct caatacggat
     4321 tctttatctg aatttataaa ccgtgataat gaatggttat ccgcggtaaa ggggaaacag
     4381 gtcgtattga ttgcggccag aaagtcagaa gccttagcaa attattggta ctacaacagc
     4441 aatattaggg gcgtggtata cgctggactg agtcgtgata ttagaaaaga actggcctat
     4501 gtgattaatg gcaggttcct gagaaaagat attaagaaag ataaaatcac ggaccgggaa
     4561 atggaaatta tccgcatgac ggcccaggga atgcaaccta aatcgattgc cagaattgaa
     4621 aattgtagtg tgaagacagt gtatacccat cggcgtaatg ctgaggccaa gctgtactca
     4681 aaaatatata agttggttca gtaaactcca ggcaagttag ttttaaaaaa tgactcactg
     4741 ggacatcacg tcctcaattc aactcgggaa gaaatgcaat gaaaaaaagg ttctggcaat
     4801 agctctggta acggtgttta ccggcatggg tgtggcgcag gctgctgacg taacagctca
     4861 ggctgtagcg acctggtcgg caacagccaa aaaagacacc accagtaatc tggttgtgac
     4921 gtcactcggt agcttggcgt tccagtatgc cgaaggcatt aaaggtttta actcacagaa
     4981 aggtctattt gacgtggcta tcgagggtga ctcaacggct accgccttta aactgacctc
     5041 acgtcttatc accaacacat taactcagtt ggatacctca ggttccacac tgaatgtggg
     5101 cgtggattat aacggcgcgg cagtcgaaaa aactggcgat accgtgatga tcgataccgc
     5161 caacggcgta ctgggcggca accttagccc gctggctaac ggttacaatg ccagcaatcg
     5221 taccaccgca caggatggtt tcaccttcac catcatcagc ggcaccacca atggtaccac
     5281 cgcagtaacc gattacagca ctctaccgga aggcatctgg agcggcgacg ttagcgtaca
     5341 gttcgacgcg acctggacca gttaatctct ctgatgtacc agcaggggta gcccccctgc
     5401 tttattcctg gacggaattg ttatgaaaaa gcaccttctg cctctcgctc tgctgttttc
     5461 cggaatatct ccggcccagg cgctggatgt cggcgatata tcatcgttta tgaacagtga
     5521 cagcagcacg ctgagcaaaa cgatcaaaaa cagtaccgac agtggtcgcc ttatcaatat
     5581 ccgtctcgaa cggctctctt caccgcttga cgacgggcag gttatctcaa tggacaagcc
     5641 ggatgagttg ctactcactc ccgccagctt gctgctaccc gcccaagcca gcgaagtgat
     5701 ccgcttcttc tataagggac ccgcagatga aaaagagcgc tactaccgca ttgtctggtt
     5761 tgatcaggcc ctcagtgatg cgcagcgcga taatgccaac cgcagcgctg tggccactgc
     5821 ttccgcccgc atcggcacca ttctggtcgt cgcccctcgt caggcgaact accactttca
     5881 gtacgccaac ggctccctga caaatacagg aaatgcgacg ctgcggatcc tcgcctacgg
     5941 cccctgcctg aaagccgcca acggtaagga gtgtaaagag aattactacc tgatgccggg
     6001 caagtcgcgt cgttttaccc gcgtggacac tgcggataac aaaggacggg ttgcactttg
     6061 gcagggtgat aagttcattc ccgtgaaata gatagctgtg cagatggata acgacaatgc
     6121 ctttacgacg gttctcccca ggactgaaag cccagtttgc cttcggcatg gtctttttgt
     6181 tcgttcagcc cgatgccagc gctgctgaca taagtgcgca gcaaataggt ggggtgatta
     6241 ttccgcaggc cttcagtcag gcgcttcagg acggcatgag cgtcccgctc tatattcatc
     6301 tcgccggtag tcagggtcgc caggacgatc agcgaatcgg cagcgctttt atctggctgg
     6361 atgatggaca gctacgcatc cggaaaatac agctggaaga gagtgaagat aacgccagtg
     6421 tcagcgaaca aactcgacag cagctgatgg ctctggcgaa cgccccgttc aatgaggccc
     6481 ttaccatccc ctgactgaca acgcgcagtt ggatctcagc ttgcgccaac tgctgcagct
     6541 ggtggtcaag cgcgaagcgc tgggcaccgt actacgctca cgtagcgaag acatcgggca
     6601 gtccagtgtt aacaccctca gcagtaatct gagctataac ttgggcgtct ataacaacca
     6661 gttgcgtaac ggcgggagca acacatccag ctatctgtcg ctgaataacg ttactgcgct
     6721 gcgcgaacat catgtggtgc tcgacggctc gctgtacggg atcggtagcg gtcaacagga
     6781 cagtgaatta tataaagcga tgtatgaacg cgattttgcc ggtcaccgat ttgccggtgg
     6841 aatgctcgac acctggaact tgcagtcatt agggccgatg accgccattt cagcagggaa
     6901 gatttacggc ctttcctggg gaaaccaggc cagctccacc atcttcgaca gcagccagtc
     6961 agccacgcca gtgatcgcct ttttaccggc ggcgggcgaa gtacatctca cccgtgatgg
     7021 gcggctacta agcgttcaga acttcactat gggcaatcat gaagtggata cccggggtct
     7081 accgtacggt atttacgatg tggaagttga ggtgatcgtt aacggtcgcg tgatcagcaa
     7141 acgcactcaa cgggtcaata agctgtttag ccggggcgcg gcgtcggtgc accactggcg
     7201 tggcaggtat ggggcggtag ctttcatatg gatcgctggt cggaaaacgg gaaaaagacg
     7261 cgaccagcta aagagagttg gctagcaggt gcctcgacct ccggctcatt gagtacgctt
     7321 agctgggcgg caacgggata tggatacgat aatcaggcgg tgggtgaaac ccgtctgacg
     7381 ctgccgcttg ggggggcgat caacgttaac ctgcaaaata tgctggccag tgacagctca
     7441 tggagcagca tcggcagcat cagcgctact ctaccgggag gctttagttc gctgtgggtt
     7501 aaccaggaaa aaacccgtat tggcaatcaa ttgcgacgta gcgatgccga caaccgtgca
     7561 atcggcggca cactcaacct gaactcactg tggtcgaagc tgggcacatt cagcatcagc
     7621 tacaatgatg accgccgtta caacagccat tattacacgg cagattacta tcaaaatgtc
     7681 tacagcggta cctttggttc gcttggcctg cgggccggta ttcagcgcta taacaacggc
     7741 gacagcaacg ccaatacagg gaaatatatc gctctcgatc tctcgctacc actgggcaac
     7801 tggtttagcg cagggatgac ccatcaaaac ggctacacca tggcaaacct gtcagcacgc
     7861 aaacagtttg atgaagggac cattcgcact gttggtgcca atctgtcacg tgccatctcc
     7921 ggcgataccg gtgatgacaa aaccctcagc ggtggggcgt atgcacagtt cgacgctcgt
     7981 tacgccagcg gaacgctgaa cgtcaatagc gcggcggacg gctacgtcaa taccaacttg
     8041 accgccaatg gcagcgtcgg ctggcagggt aaaaacattg ctgccagcgg cggactgatg
     8101 gcaacgctgg ggtgatattc aacaccgggc tggaggacga cggtcagatc agcgccaaaa
     8161 tcaacgggcg gattttcccg cttaacggca agcgtaacta tctcccgctc tctccctatg
     8221 gaagatatga ggtggagtta cagaacagca aaaactcact cgacagttac gatatcgtca
     8281 gcggccgcaa aagtcgtctg actctctatc caggcaatgt cgctgtcatt gagccagagg
     8341 tgaagcagat ggttaccgtc tccggtcgta tccgtgcgga agacggcaca ctgctggcta
     8401 acgcacggat taacaaccat atcggccgaa cccgaaccga tgaaaacggc gagtttgtca
     8461 tggacgtgga taagaaatac cccactatcg attttcgcta cagtggcaat aaaacctgcg
     8521 aagtggctct ggaactcaac caggcgcgcg gtgccgtctg ggtcggtgat gtggtctgca
     8581 gcggcctctc atcgtgggcg gcggtgacgc agacaggaga agagaatgag agttaaccta
     8641 ctaataacga tgataatttt cgcgctaatc tggccagtaa ctgcgctcag agcggcagtg
     8701 agcaaaacaa cctgggcgga tgcaccggca cgcgagtttg tgtttgtcga aaacaactca
     8761 gacgacaact ttttcgtcac tcctggcggg gcgctggatc cgcgcctgac cggtgccaac
     8821 cgctggaccg gtttaaaata cactggttca ggaaccatct atcagcaaag cctcggctac
     8881 attgataacg gttacaacac cggcctttat accaactgga agtttgatat gtggctggaa
     8941 aattcgccgg tttcatctcc tttaactggc ttacgctgca tcaactggta cgcagggtgt
     9001 aatatgacca ccagtcttat cctgccgcaa accaccgacg ccagtggatt ttatggcgcg
     9061 acggtgacca gcggcggcgc gaagtggatg cacggcatgt tgtcagacgc gttttaccag
     9121 tatatgcaac aaatgcccgt cggcagcagc tttacaatga ccatcaatgc ctgtcagacc
     9181 tctgtgaact atgacgccag cagcggcgcg cgttgtaagg atcaggcctc cggcaactgg
     9241 tatgttcgca atgtcaccca tacgaaagca gcaaatcttc ggttaataaa tacccactcg
     9301 ctggcggagg tatttatcaa cagcgacggg gtgccgaccc tgggcgaagg gaacgccgac
     9361 tgccggacac agaccatcgg cagcctttca ggattaagtt gtaagatggt caactatacc
     9421 ctgcaaacaa acggactcag caacacctca atccatatat tcccggcgat cgccaactcg
     9481 tcgttagcct cggccgtcgg ggcgtacgat atgcagttca gtctgaatgg cagttcatgg
     9541 aaaccggtga gcaataccgc ctattactac accttcaacg agatgaagag cgcagactcg
     9601 atctatgttt tcttctcgag caacttcttt aagcagatgg tgaacctcgg
//
LOCUS       DADMJB010000159         9518 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.161, whole genome shotgun sequence.
ACCESSION   DADMJB010000159 DADMJB010000000
VERSION     DADMJB010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9518
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.161"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            291..1826
                     /gene="gadC"
                     /locus_tag="JN078_003420"
     CDS             291..1826
                     /gene="gadC"
                     /locus_tag="JN078_003420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance gamma-aminobutyrate antiporter
                     GadC"
                     /protein_id="HAY9042501.1"
                     /translation="MATSVQTGKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVF
                     FLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIG
                     FIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGF
                     FAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVE
                     ASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFT
                     VLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNK
                     NGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVL
                     VLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLV
                     VSFLVVLALPFILYAVHDRKGKANTGVTLEPINSQNAPKGHFFLHPRARSPHYIVMND
                     KKH"
     gene            1957..3276
                     /locus_tag="JN078_003421"
     CDS             1957..3276
                     /locus_tag="JN078_003421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 10 glycosylhydrolase"
                     /protein_id="HAY9042502.1"
                     /translation="MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSK
                     PPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLG
                     INTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWF
                     NPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITS
                     IVAEVVSRYPVDGVQFDDYFYTESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIT
                     KVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLD
                     YIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMING
                     GVPELKKQLDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS"
     gene            3648..5029
                     /gene="dosC"
                     /locus_tag="JN078_003422"
                     /pseudo
     CDS             3648..5029
                     /gene="dosC"
                     /locus_tag="JN078_003422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310122.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DosC"
     gene            5054..7453
                     /gene="dosP"
                     /locus_tag="JN078_003423"
                     /gene_synonym="pdeO"
     CDS             5054..7453
                     /gene="dosP"
                     /locus_tag="JN078_003423"
                     /gene_synonym="pdeO"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-sensing cyclic-di-GMP phosphodiesterase"
                     /protein_id="HAY9042503.1"
                     /translation="MKLTDAENAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKL
                     WGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIW
                     TRFALSKVSAEGKVYYLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQ
                     CNRAFTEMFGYCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRT
                     GEKIWIKASISPVYDVLAHLQNLVMTFSDITEERQIRQLEGNILAAMCSSPPFHEMGE
                     IICRNIESVLNESHVSLFALRNGMPIHWASSSHGAEVQNAQSWSATIRQRDGAPAGIL
                     QIKTSSGAETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHN
                     YLDDLVDKAVSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFRGKLKPDQYLCRI
                     EGTQFVLVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISYDVGKNHDYL
                     LSTAHNAIDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIF
                     AETGELYGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRS
                     QNIHIPALSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFK
                     RIQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAI
                     TSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPLK
                     I"
     gene            7711..8292
                     /gene="ddpX"
                     /locus_tag="JN078_003424"
     CDS             7711..8292
                     /gene="ddpX"
                     /locus_tag="JN078_003424"
                     /EC_number="3.4.13.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine dipeptidase"
                     /protein_id="HAY9042504.1"
                     /translation="MSDTTELVDLAVIFPDLEIELKYACADNITGKAIYQQARCLLHK
                     DAITALAKSISIAQLSGLQLVIYDAYRPQQAQAMLWQACPDPQYVVDVTVGSNHSRGT
                     AIDLTLRDEHGNILDMGAGFDEMHERSHAYHPSVPPAAQRNRLLLNAIMTGGGFVGIS
                     SEWWHFELPQAASYPLLADQFTCFISPGTQHVS"
     gene            8306..>9518
                     /locus_tag="JN078_003425"
     CDS             8306..>9518
                     /locus_tag="JN078_003425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HAY9042505.1"
                     /translation="MKRSIPFRPTLLALVLATTFPVAHAAVPKDMLVIGKAADPQTLA
                     PAVTIDNNDWTVTYPSYQRLVQYKTDGDKGSTDVEGDLASSWKASDDQKEWTFTLKDN
                     AKFADGTPVTAEAVKLSFERLLKIGQGPAEAFPKDLKIDAPDEHTVKFTLSQPFAPFL
                     YTLANDGASIINPAVLKEHAADDARGFLAQNTAGSGPFMLKSWQKGQQLVLVPNPHYP
                     GNKPNFKRVSVKIIGESASRRLQLSRGDIDIADALPVDQLNALKQENKVNVAEYPSLR
                     VTYLYLNNSKAPLNQADLRRAISWSTDYQGMVNGILSGNGKQMRGPIPEGMWGYDATA
                     MQYNHDETKAKAEWDKVTSKPTSLTFLYSDKDPNWEPIALATQSSLNKLGINVKLEKL
                     ANATMRDRVGKG"
BASE COUNT         2480 a         2333 c         2322 g         2383 t
ORIGIN      
        1 attatgtgtc gtcgcggctt cgaaatggac tttgctgaac tgttgctgga agactacaaa
       61 gcctccctga aatatctcag cgatcacccg aaactgcagg gtattgccca gcagaacagc
      121 tttaaacata cctgataacg tttaacggta acggtgtccc gaaacgaacc cgtttcggga
      181 caatttccaa agtctgttca ctggcattag caacggaaaa tattgttctg aatacgcttc
      241 agaacaaaac aggtgcggtt ccgacaggaa taccgtttta gggggataat atggctacat
      301 cagtacagac aggtaaagct aagcagctca cattactcgg attctttgcc ataacggcat
      361 cgatggtaat ggctgtttat gaatacccta ccttcgcaac atcgggcttt tcattagtct
      421 tcttcctgct attaggcggg attttatggt ttattcccgt gggactttgt gctgcggaaa
      481 tggccaccgt cgacggctgg gaagaaggtg gtgtcttcgc ctgggtatca aatactctgg
      541 ggccgagatg gggatttgca gcgatctcat ttggctatct gcaaatcgcc attggtttta
      601 ttccgatgct ctatttcgtg ttaggggcac tctcctacat cctgaaatgg ccagcgctga
      661 atgaagaccc cattaccaaa actattgcag cactcatcat tctttgggcg ctggcattaa
      721 cgcagtttgg tggcacgaaa tacacggcgc gaattgctaa agttggcttc ttcgccggta
      781 tcctgttacc tgcatttatt ttgatcgcat tagcggctat ttatctgcac tccggtgccc
      841 ccgttgctat cgaaatggat tcgaagacct tcttccctga cttctctaaa gtgggcacac
      901 tggttgtatt tgttgccttc attttgagtt atatgggcgt agaagcttcc gcaactcacg
      961 tcaatgaaat gagcaacccc gggcgcgact atccactggc tatgttactg ctgatggtgg
     1021 cggcaatctg cttaagctct gttggcggtt tatctattgc gatggtcatt ccgggtaatg
     1081 aaatcaacct ctccgcaggg gtaatgcaaa cctttaccgt tctgatgtcc catgtggcac
     1141 cggaaattga gtggacggtt cgcgtgatct ccgcactgct gttgctgggt gttctggcgg
     1201 aaatcgcctc ctggattgtt ggtccttctc gcgggatgta tgtcacagcg cagaaaaacc
     1261 tgctgccagc ggcattcgct aaaatgaaca aaaatggcgt accggtaacg ctggtcattt
     1321 cgcagctggt gattacttct atcgcgttga tcatcctcac caataccggt ggcggtaaca
     1381 acatgtcctt cctgatcgca ctggcgctga cggtggtgat ttatctgtgt gcttatttca
     1441 tgctgtttat tggctacatt gtgttggttc ttaaacatcc tgacttaaaa cgcacattta
     1501 atatccctgg tggtaaaggg gtgaaactgg tcgtggcaat tgtcggtctg ctgacttcaa
     1561 ttatggcgtt tattgtttcc ttcctgccgc cggataacat ccagggtgac tctaccgata
     1621 tgtatgttga attactggtc gttagtttcc tggtggtact tgccctgccc tttattctct
     1681 atgctgttca tgatcgtaaa ggcaaagcga ataccggcgt cactctggag ccaatcaaca
     1741 gtcagaacgc accaaaaggt cacttcttcc tgcacccgcg tgcacgttca ccacactata
     1801 ttgttatgaa tgacaagaaa cactaaccat gtctgaatgg ttataagaca agggagcgat
     1861 aattcatcgc tccctttttc gtgcttgctg tcgtattgac ttaaccggga taagtacgag
     1921 aatgagcgca catctgttta ccggaaacca gcacatatgg atatctgctc ccgaaacaag
     1981 aaattaacga ttagaagacc agcgatactg gttgcactgg cacttttact gtgtagttgt
     2041 aaaagcacgc ctccagagtc catggtgaca ccaccagcag gttcaaagcc accagccacg
     2101 acgcaacaat cgtcacaacc gatgcgtggc atctggctgg ccacggtgtc tcgcctcgac
     2161 tggccaccgg tttcctcggt taacattagt aaccccacca gccgggcccg tgtacaacaa
     2221 caggcgatga tcgacaaact ggatcatctg caacgtctcg gtataaacac ggtctttttc
     2281 caggtcaagc cggacggtac cgccctgtgg ccatcaaaaa ttttgccgtg gtccgatctt
     2341 atgaccggta agattggtga aaatccgggt tacgatccgc tgcaatttat gctcgacgaa
     2401 gcccacaagc gtgggatgaa agtacacgcc tggtttaacc cctatcgcgt atcggttaat
     2461 acgaagcccg gtactatcag ggaactgaat agcactctgt ctcaacaacc ggcgagcgtc
     2521 tatgtgcaac accgtgactg gatcagaacg tctggcgatc gctttgtcct cgacccgggc
     2581 atccctgagg ttcaggactg gatcacatca atagtcgccg aagtggtttc ccgctatccg
     2641 gtagatggcg tgcagtttga cgactatttc tatacggagt caccgggttc acggctaaat
     2701 gataacgaaa cgtaccgtaa atacggaggc gcatttgcgt caaaagcaga ctggcggcgc
     2761 aacaatactc agcagttaat tacaaaagta tcgcacacca ttaaaagcat taagccggga
     2821 gtcgaatttg gcgttagccc ggcaggcgtg tggcgtaacc gatcacacga tccgctcggt
     2881 tccgataccc gaggcgcggc agcctatgac gaatcctacg ccgacacccg tcgatgggtg
     2941 gaacaaggat tgctggatta cattgctccc caaatttact ggccgttctc acggagtgcc
     3001 gcgcgttatg acgtgttggc aaaatggtgg gcggatgtcg ttaaaccgac caggacccgc
     3061 ctgtatatcg gtatcgcctt ctataaagtg ggtgaacctt caaagataga gccagactgg
     3121 atgattaacg gcggcgtacc ggaactgaaa aagcagctcg atcttaacga tgcggtacca
     3181 gaaattagcg gcaccatctt gttccgtgag gactatctga ataaaccgca gactcaacaa
     3241 gcggtcagct atctgcaaag tcgttggggc agttaaactc ccatgcttac tttgtaacaa
     3301 gccggtgctt tacccaccgg cttgttacac cttgtgaaat atcccactag taatcatgct
     3361 tacataagtc aaattaacca cgcaattaac cacacttagt taaacagcta taaatcccta
     3421 ataaaaatgt atgaatatga aaaaccatac gatattcgct gtcaccgaaa aataattacg
     3481 atgggctata ctcttctgaa gaacagtagc gtagattgaa actgtcctaa gtcgcttatt
     3541 tcttttcagt atatcttcat atttcaggag aatatggtgc agttagtcga tctcgcacgt
     3601 tgcgttttga ttccgtctga tttcccagcc ttataagggt gtgaattatg gagatgtatt
     3661 ttaaaagaat gaaagatgag tggaccggac ttgtcgaaca ggcagatcca ctcattcgtg
     3721 ctaaagccgc ggaaattgcc gttgcgcatg ctcattatct gagtatcgag ttttatcgaa
     3781 ttgtccgcat cgacccgcat gccgaagaat tcttgagtaa tgaacaagtt gagcggcagt
     3841 tgaaaagtgc gatggaacgc tggattatta acgtgctttc tgcccaggtt gacgatgtcg
     3901 aaaggctaat acaaatccag cataccgtcg cggaagtgca tgcccgcata ggaattccgg
     3961 tagaaattgt cgagatgggg tttcgggtgc tgaaaaaaat cctctatccg gtaatcttct
     4021 cttcggatta ttctgccgca gaaaaacttc aggtctacca tttctcgatt aacagtattg
     4081 atatcgctat ggaagtgatg acccgcgcgt ttacctttag tgacagtagt gcctcaaagg
     4141 aagatgaaaa ctatcgtatc ttctcgttac tagaaaacgc cgaagaagaa aaagaacggc
     4201 aaatagcctc aatactttca tgggaaatag atattatcta taaaatcctg ctggattctg
     4261 atttaggcag tagtttgcct ttaagccagg ctgattttgg cctgtggttt aaccataaag
     4321 gtcgacatta ttttagtggc attgccgaag taggcatatc tcccgtctga ttcaggattt
     4381 cgacggtata ttcaatcaaa ccatgcgtaa caccaggaat ttgaataaca gaagtctgcg
     4441 ggtgaaattt ttattacaga taagaaatac tgtatcgcaa attattacct tgctgcgtga
     4501 attgtttgaa gaagtatcgc gccacgaagt cggtatggat gtactgacga aattacttaa
     4561 ccgccgcttc ctgccgacta tcttcaaacg cgaaattgcc catgccaacc ggaccggtac
     4621 accgctgtca gtgctgatta ttgacgttga taaattcaaa gagatcaacg atacgtgggg
     4681 ccataacact ggcgatgaaa ttctgcgtaa agtctctcag gccttttatg acaacgtccg
     4741 cagtagtgat tatgtttttc gctacggggg cgatgaattt atcattgttt tgactgaagc
     4801 ttctgaaaac gaaacgttac gtaccgcaga acgtattcgc agtcgggtgg agaaaaccaa
     4861 actgaaagcc gcaaacggcg aggatattgc cctctcactt tccatcggtg ccgccatgtt
     4921 taatggtcat cctgactatg agcgcctcat tcaaatagcc gatgaagctc tgtatatcgc
     4981 caaaagacga ggtagaaacc gtgttgaact ctggaaagcc agtctttaga tgcgccagga
     5041 tgcagaggta atcatgaagc taaccgatgc ggaaaatgcc gccgatggca tttttttccc
     5101 cgcccttgaa caaaatatga tgggcgcggt gttaattaac gaaaatgatg aagtgatgtt
     5161 tttcaacccc gccgcagaga agctctgggg gtacaaacgt gaagaagtca ttggcaataa
     5221 cattgatatg ctgattccgc gggatttgcg tcctgcgcat cctgaataca ttcgtcataa
     5281 ccgtgaaggt ggtaaagcgc gcgtcgaggg gatgagtcgg gagctgcagc tggagaaaaa
     5341 agacggcagt aaaatctgga cccgttttgc gctatcgaaa gtgagcgccg aggggaaagt
     5401 ttattacctg gcgctggtac gggatgccag cgtagaaatg gcgcaaaaag aacagacccg
     5461 acaattgatt attgccgttg accatctcga ccgaccggtg attgtcctcg atccggaacg
     5521 ccatattgtg cagtgcaatc gcgcatttac cgaaatgttt ggttactgca ttagcgaagc
     5581 cagcggtatg cagcccgata cactcctgaa cattcctgaa ttccctgccg ataaccgcat
     5641 tcgtttacaa cagttgctat ggaaaaccgc ccgcgatcag gacgaatttc tgctgttgac
     5701 gcgcaccggt gaaaaaatct ggattaaagc ctctatcagc ccggtttatg acgtgctcgc
     5761 gcatctgcag aacctggtaa tgactttctc ggatatcacc gaagaacggc aaatccgcca
     5821 gcttgaaggc aatattctcg ccgccatgtg cagcagcccg ccatttcatg aaatggggga
     5881 aatcatttgt cgtaacatcg aatctgttct caacgaatcg catgtttcgc tgttcgcact
     5941 gcgcaacggg atgccgatac actgggcgtc atcttcgcac ggtgcagaag ttcaaaatgc
     6001 gcaaagctgg tcagcgacca ttcgtcagcg tgatggcgcg cctgcgggga tcctgcaaat
     6061 taaaacctcg tcaggagcag aaaccagcgc ctttatcgaa cgcgtggcag atatcagtca
     6121 gcatatggcc gcgctggcgc tggaacagga aaaaagccgc cagcatattg aacaactcat
     6181 ccaatttgat ccgatgaccg gtctgccaaa tcgcaataac ctgcacaatt acctcgatga
     6241 cctggtcgac aaagccgtct ctccggtggt gtatctcatc ggtgttgacc atattcagga
     6301 tgtgattgat agccttggct atgcgtgggc cgatcaggca ttgctggaag tggtcaatcg
     6361 ctttcgtgga aaactcaaac cggatcagta tctctgtcgt atcgaaggta cgcagtttgt
     6421 cctcgtgagc ctggaaaacg acgtcagtaa cattacccag atcgccgatg agctacggaa
     6481 tgtggtcagc aagccgataa tgattgacga taaaccattc ccgcttacct tgagtattgg
     6541 catcagctac gacgtgggta aaaaccacga ttacctactc tccactgctc acaatgcaat
     6601 agattatatt cgcaagaatg gcggtaacgg ctggcagttc ttcagcccgg cgatgaacga
     6661 aatggtaaaa gagcgtttgg ttttaggcgc agcgctgaaa gaagcgatta gcaataacca
     6721 actgaaactt gtttaccagc cgcaaatctt cgcagaaacg ggtgaactgt acggcatcga
     6781 agcccttgcg cgctggcacg atccccagca tggtcatgtg cccccttcac ggtttattcc
     6841 tctcgcagaa gagattggtg aaatcgaaaa tattgggcgc tgggtcatcg cggaagcttg
     6901 ccgtcagtta gcagaatggc gtagccagaa tattcatatc ccggcgcttt ccgttaactt
     6961 gtcggcactg cactttcgca gtaatcaact gcctaatcag gtgtctgatg caatgcacgc
     7021 ctggggtatt gacggccacc agctgacggt agaaatcacg gaaagcatga tgatggaaca
     7081 cgataccgaa atctttaagc gcattcagat cctgcgtgat atgggcgtgg gcttatcggt
     7141 agatgatttt ggtacgggct tttccggatt atcccgctta gtcagtcttc cggtaacgga
     7201 aatcaaaatt gacaaaagtt ttgtcgatcg ttgtctgacc gaaaaacgca tccttgcctt
     7261 acttgaagcc attaccagca ttgggcaaag cctcaattta accgtcgtgg cggaaggcgt
     7321 cgaaaccaaa gagcaatttg agatgctacg caagatccac tgtcgcgtta ttcagggata
     7381 tttcttttcc cgccccctac ccgccgaaga aattccaggc tggatgagca gcgtgttacc
     7441 gctgaaaatc tgacaaattc ctctcgcccg cactcgcggg ttttcattta acgtgacacc
     7501 gtcacttaaa tactgtgatt tcatctacga ttccgggaga ttccttcctt aacttcccct
     7561 cttgcaccaa aactgcacta cgctgcacaa atgttgatca aaagttaaaa aatataactt
     7621 taagccagca ttctggcgct tatcccggca tggcatgaga tctgcataag cggaaagcgc
     7681 agcaattttt gtcttataca ggaaccgttt atgtcggata ccaccgaact ggttgattta
     7741 gccgtaatct tccctgatct ggagatcgaa ttgaaatacg cctgcgctga taacatcaca
     7801 ggtaaagcta tttatcagca agcgcgttgt ctgctacaca aggatgcgat taccgcgctg
     7861 gcgaaaagta tcagtatcgc ccagctgtca ggcttacaac tggtgattta cgatgcgtat
     7921 cgcccacaac aagcacaggc gatgttgtgg caagcctgcc cagacccgca atatgttgtt
     7981 gatgtgacgg tcggttctaa tcacagccgt ggcacggcga tcgacctgac gcttcgtgat
     8041 gagcacggga acatcctcga tatgggcgca gggttcgatg aaatgcacga gcgctcccat
     8101 gcctatcacc cttccgtccc gcccgccgct cagcgcaatc ggctgttgct gaatgcgatt
     8161 atgactggtg gcggttttgt cggtatctcc agcgaatggt ggcacttcga attaccccag
     8221 gcagcgagtt acccactgct cgctgatcaa ttcacctgtt ttatatcccc tggcacacag
     8281 cacgtcagtt aatcaggaaa ctgtcatgaa gagatcgata ccgtttcgtc ctacattgct
     8341 cgcgctcgtc cttgccacaa ctttcccggt tgcgcacgcc gccgtaccga aagatatgct
     8401 ggtgattggt aaggccgccg atccacaaac cctcgccccg gcggtaacaa tagataataa
     8461 cgactggacg gtgacctacc cgtcttatca gcggctggtt cagtacaaaa cggacggtga
     8521 taaaggctca accgacgttg aaggcgatct ggcaagtagc tggaaagcgt ctgacgatca
     8581 aaaagagtgg acgttcaccc tgaaggacaa tgctaaattt gccgatggca caccggtcac
     8641 tgccgaagca gtaaaactct cttttgagcg gctactaaaa atcggccagg ggccagcaga
     8701 agcatttccc aaagatttaa agattgatgc tcccgacgaa catacggtga agtttaccct
     8761 tagccagcca ttcgcaccgt tcctctacac gctggcgaat gacggtgcat ccattatcaa
     8821 tccggcggtg ttaaaggaac atgcagcgga tgatgcccgc ggcttcctcg cgcaaaatac
     8881 cgccggttcc ggaccattta tgctgaaaag ctggcaaaaa ggtcagcaat tagttctggt
     8941 gccaaatccg cattaccctg gcaataaacc gaactttaag cgagtatcgg taaaaattat
     9001 tggtgaaagt gcctcccgtc gcctgcagct ctcccgtggt gatattgaca ttgccgatgc
     9061 gctgccggtg gatcaactca acgccctgaa gcaggaaaac aaagtcaatg tggcagagta
     9121 tccgtcactg cgcgtcacct acctgtatct gaataacagc aaagcgcctc ttaatcaggc
     9181 ggatctgcgt cgggccattt cctggtctac cgattatcag ggcatggtta acggcattct
     9241 gagtggtaac ggaaaacaga tgcgcggccc gattccggaa ggcatgtggg gctacgatgc
     9301 gacggcaatg caatacaacc atgacgaaac gaaagccaaa gccgaatggg ataaagtgac
     9361 gagcaaaccc accagcctga cgtttctcta ctccgataag gatccgaact gggagcctat
     9421 tgctctggcg acacaatcca gtctcaacaa gctgggcatc aatgtgaagc tggaaaagct
     9481 ggcgaacgcc accatgcgcg acagagtggg taaaggtg
//
LOCUS       DADMJB010000160         9498 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.162, whole genome shotgun sequence.
ACCESSION   DADMJB010000160 DADMJB010000000
VERSION     DADMJB010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9498
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.162"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..191
                     /locus_tag="JN078_003426"
     CDS             <1..191
                     /locus_tag="JN078_003426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042506.1"
                     /translation="AHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALRFNP
                     LATLPSGDKVAAAVGITP"
     gene            complement(296..832)
                     /locus_tag="JN078_003427"
     CDS             complement(296..832)
                     /locus_tag="JN078_003427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAY9042507.1"
                     /translation="MRRANDPQRREKIIQATLEAVKLYGIHAVTHRKIATLAGVPLGS
                     MTYYFSGIDELLLEAFSSFTEIMSRQYQAFFSDVSDAQGACQAITDMIYSSQVATPDN
                     MELMYQLYALASRKPLLKTVMQNWMQRSQQTLEQWFEPGTARALDAFIEGMTLHFVTD
                     RKPLSREEILRMVERVAG"
     gene            916..2124
                     /locus_tag="JN078_003428"
     CDS             916..2124
                     /locus_tag="JN078_003428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9042508.1"
                     /translation="MTVNSSRNALKRRTWALFMFFFLPGLLMASWATRTPAIRDILSV
                     SIAEMGGVLFGLSIGSMSGILCSAWLVKRFGTRNVILVTMSCALIGMMILSLALWLTS
                     PLLFAVGLGVFGASFGSAEVAINVEGAAVEREMNKTVLPMMHGFYSLGTLAGAGVGMA
                     LTAFGVPATVHILLAALVGIAPIYIAIQAIPDGTGKNAADGTQHGEKGIPFYRDIQLL
                     LIGVVVLAMAFAEGSANDWLPLLMVDGHGFSPTSGSLIYAGFTLGMTVGRFTGGWFID
                     RYSRVAVVRASALMGALGIGLIIFVDSAWVAGVSVVLWGLGASLGFPLTISAASDTGP
                     DAPTRVSVVATTGYLAFLVGPPLLGYLGEHYGLRSAMLVVLALVILAAIVAKAVAKPD
                     TKTQTAMENS"
     gene            2124..2939
                     /gene="ybjI"
                     /locus_tag="JN078_003429"
     CDS             2124..2939
                     /gene="ybjI"
                     /locus_tag="JN078_003429"
                     /EC_number="3.1.3.104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-(5-phospho-D-ribitylamino)uracil
                     phosphatase"
                     /protein_id="HAY9042509.1"
                     /translation="MSIKLIAVDMDGTFLSDQKTYNRERFMAQYQQMKAQGIRFVVAS
                     GNQYYQLISFFPEIANEIAFVAENGGWVVSEGKDVFNGELSKDAFTTVVEHLLTRPEV
                     EIIACGKNSAYTLKKYDDAMKTVAEMYYHRLEYVDNFDNLEDIFFKFGLNLSDELIPQ
                     VQKALHEAIGDIMVPVHTGNGSIDLIIPGVHKANGLRQLQKLWGIDDSEVVVFGNGGN
                     DIEMLRQAGFSFAMENAGSAVVAAAKYRAGSNNREGVLDVIDKVLKHEAPFDQ"
     gene            3025..3309
                     /locus_tag="JN078_003430"
     CDS             3025..3309
                     /locus_tag="JN078_003430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042510.1"
                     /translation="MIMKNCLLLGALLMGFTGVAMAQSVTVDVPSGYKVVVVPDSVSV
                     PQAVSVATVPQTVYVAPAPAPAYRPHPYARHLASVGEGMVIEHQIDDHHH"
     gene            complement(3350..4580)
                     /gene="mdfA"
                     /locus_tag="JN078_003431"
                     /pseudo
     CDS             complement(3350..4580)
                     /gene="mdfA"
                     /locus_tag="JN078_003431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308949.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdfA"
     gene            4865..5461
                     /gene="ybjG"
                     /locus_tag="JN078_003432"
     CDS             4865..5461
                     /gene="ybjG"
                     /locus_tag="JN078_003432"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HAY9042511.1"
                     /translation="MLENLNLSLFSLINATPDSAPWMISLAIFIAKDLITVVPLLAAV
                     LWLWGLTAQRQLVIKIAIALAVSLFVSWTMGHLFPHDRPFVENIGYNFLHHAADDSFP
                     SDHGTVIFTFALAFLCWHRLWSGSLLMVLAVVIAWSRVYLGVHWPLDMLGGLLAGMIG
                     CLSAQIIWQAMGHKLYQRLQSWYRFCFALPIRKGWVRD"
     gene            5519..6277
                     /gene="deoR"
                     /locus_tag="JN078_003433"
     CDS             5519..6277
                     /gene="deoR"
                     /locus_tag="JN078_003433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor DeoR"
                     /protein_id="HAY9042512.1"
                     /translation="METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNN
                     HSAPVVLLGGYIVLEPHSASHYLLSDQKSRLVEEKRRAAKLAATLVEPDQTLFFDCGT
                     TTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPIDFQQT
                     LNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPA
                     RMGDLKRFDIVVSDCCPEDEYVKYAQTHRIKLMY"
     gene            complement(6324..7515)
                     /gene="dacC"
                     /locus_tag="JN078_003434"
                     /pseudo
     CDS             complement(6324..7515)
                     /gene="dacC"
                     /locus_tag="JN078_003434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308946.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
     gene            7809..8387
                     /locus_tag="JN078_003435"
     CDS             7809..8387
                     /locus_tag="JN078_003435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HAY9042513.1"
                     /translation="MLTLEELELPYEQILAGREFGINHDADFLAMNPNGLVPLLRDDE
                     SDLILWESNAIVRYLAAQYGQKRLWIDSPARRAEAEKWMDWANQTLSNAHRGILMGLV
                     RTPPEERDQAAIDASCKECDALFALLDAELAKVKWFSGDEFGVGDIAIAPFIYNLFNV
                     GLTWTPRPNLQRWYQQLTERPAVRKVVMIPVS"
     gene            complement(8384..9475)
                     /locus_tag="JN078_003436"
     CDS             complement(8384..9475)
                     /locus_tag="JN078_003436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001450075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HAY9042514.1"
                     /translation="MPLICLSSALWAAPATVNVEVLQDKLDHPWALAFLPDNHGMLIT
                     LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD
                     GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENN
                     QRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGARAEIWSYGIRNPQGMAMNPWSN
                     ALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYW
                     KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRI
                     RDVRTGPDGYLYVLTDESSGELLKVSPRN"
BASE COUNT         2296 a         2456 c         2342 g         2404 t
ORIGIN      
        1 cggcgcactt catgatgtcg ggtggaaaca ttctggcctt acaaaaaatt ctcggacacc
       61 acgatataaa aatgactatg cgttacgcac atctggcacc ggatcatctg gaaacggcgc
      121 tccgtttcaa tcctctggca acgctgccaa gtggcgacaa agtggcggca gcggttggca
      181 ttaccccgta ataaccacca ctgaccacca acctaactta ttgtttttaa tctaacttat
      241 tgttttcatt aacccgttta cataaatggg ttttttgtta tctaaaattt atctactacc
      301 ctgcaaccct ctcaaccatc ctcaaaatct cctcgcgcga tagcggctta cggtcggtga
      361 caaaatgcag cgtcatcccc tcaataaacg catcaagcgc gcgggcggtt ccgggttcaa
      421 accattgttc gagcgtttgc tgactgcgct gcatccagtt ttgcattacc gtttttaata
      481 gcggttttcg gctagccagc gcgtagagct ggtacatcag ctccatatta tccggcgttg
      541 caacctgtga gctgtagatc atatcggtga tagcctggca tgcgccttga gcatcactaa
      601 catcgctaaa aaatgcctga tattgccggg acataatctc agtaaaactg ctgaacgcct
      661 ccagcaacaa ctcatcaatt cctgaaaaat agtaggtcat cgatcccaac ggtaccccgg
      721 caagggtagc aattttgcgg tgcgtaacag catgtattcc gtaaagtttc accgcctcca
      781 gcgtggcctg gataattttt tctcgccgtt gcggatcgtt agcgcgacgc atgtcatttc
      841 ctctgtctgc aattgtgtac aaatgtacac aaccttgcta atgttgtctt ccctcttctt
      901 attttgacgt gatctatgac cgtaaattct tcacgtaatg cattgaaacg ccgaacctgg
      961 gcgctgttta tgttcttctt tttgccaggc ctgttaatgg cgtcctgggc aacccgtacg
     1021 cctgctatcc gcgatattct ctctgtctcg atcgctgaaa tgggcggtgt tctctttggt
     1081 ctgtcgatcg gttcgatgag cggtattctc tgctcggcgt ggttagtgaa acgctttggg
     1141 acacgtaatg tcatcctggt cacgatgtcc tgcgcattga tcgggatgat gatattaagt
     1201 ctggcactct ggctgacatc gcccctgctc tttgccgttg gtctcggcgt ctttggggca
     1261 agttttggtt ctgcggaagt ggcgataaac gttgaaggtg ccgccgttga gcgagaaatg
     1321 aataaaacgg ttttgccgat gatgcacggt ttttatagcc tgggcacgct ggcaggcgct
     1381 ggtgtcggga tggcactgac ggcctttggc gttccggcaa cggtgcacat tttattggcg
     1441 gcgctggtag gtatcgcgcc tatttatatc gccattcagg caatccctga cggtacgggc
     1501 aaaaatgctg ccgatggcac ccagcatggc gaaaaaggca ttccttttta tcgcgatatc
     1561 cagttgctgt tgattggtgt tgtagtgctg gcgatggcct ttgccgaagg ttctgccaac
     1621 gactggttac ccttattaat ggttgacggt cacggtttta gccctacttc cggctcgctg
     1681 atttatgccg gttttaccct ggggatgacc gttggacgct tcactggcgg ttggttcatc
     1741 gaccgttaca gtcgcgttgc cgtggttcgg gccagtgcac taatgggggc gttgggtatt
     1801 gggctgatta tttttgtcga tagcgcctgg gtcgctgggg tgtctgttgt actctgggga
     1861 ctgggtgcct cgctgggctt cccgctgacc atttctgccg ccagcgatac cggccccgat
     1921 gcaccaaccc gcgtcagtgt ggtagcaacg accggttatc tggctttcct cgtcgggccg
     1981 ccgctgctgg gctatctcgg cgaacattat ggattacgta gtgcaatgct ggttgtactg
     2041 gcgctggtta ttctcgcggc tattgtcgcg aaagccgtcg ccaaacccga taccaaaacg
     2101 cagacggcga tggagaatag ttgatgagca ttaaattaat tgcggtagac atggatggta
     2161 ctttcttaag cgatcaaaaa acctataacc gtgagcggtt tatggctcag tatcagcaaa
     2221 tgaaagcaca aggcattcgc tttgtggtcg ccagcgggaa tcaatattat cagttgatct
     2281 ctttcttccc tgaaattgct aatgaaattg cctttgtggc tgaaaacggc ggctgggtag
     2341 tgagtgaagg caaagatgtt tttaatggcg agctgtcgaa ggatgccttt actactgtcg
     2401 tggaacattt gctgacgcgc ccggaagtgg aaattattgc ctgcggaaaa aatagcgcct
     2461 atacgctcaa aaaatatgac gatgccatga aaacggtggc ggaaatgtat tatcaccgtc
     2521 tggaatacgt tgataacttt gacaacttag aagatatttt ctttaagttt ggcctgaatc
     2581 tttccgatga actgattcca caagtacaaa aagcattaca tgaggccatc ggcgatatta
     2641 tggtgccagt ccacaccggc aacggcagca tcgatctgat tatccccggc gtacataaag
     2701 ccaatggcct tcgccaactg cagaaattat ggggaataga cgacagcgaa gtggtggtct
     2761 ttggcaatgg cggtaacgat attgagatgc tgcgtcaggc aggctttagt tttgcaatgg
     2821 aaaatgccgg cagcgcggtc gtcgcagcgg caaaataccg ggcaggctcc aataaccgtg
     2881 aaggcgtact ggatgtgatc gataaagtgc ttaaacacga agcgccattt gaccaataaa
     2941 aacggcagca cgcccggcaa cacaatacct gaatgaaggc tgcataattc gcggaaatta
     3001 acccgctgca ttatttcagg cgaaatgatt atgaaaaatt gtctactgtt gggcgcgctt
     3061 ttaatgggct ttactggtgt ggcgatggcg caaagtgtca ccgtcgatgt gccgagtgga
     3121 tacaaagtgg ttgtagttcc tgattcagtc agcgttccac aagcggtcag cgtcgcgact
     3181 gtgccgcaaa ccgtctatgt ggctcctgcg ccagctccgg cttaccgccc gcatccttat
     3241 gctcgccatc ttgccagcgt aggtgaaggg atggttatcg aacaccagat tgacgaccat
     3301 caccattaat tcgagaattc ctgatcgcac aaagcagtca ggcatttttt tacccttcgt
     3361 gagaatttcc catctgttta tcttttaaaa agataaccat cagcgacagc cacaaaattc
     3421 cgttgacaag gttgaagaga ttaaactgtc cgttgccccc gttcagccag gcatgtttgc
     3481 tgatttcaat accaacggta aagatcagca tttgcagcat tcccatcgcc gcagaaaccg
     3541 tacctttact catatcgctg gcaaacaggg ttaatcgcac cagtcccgca ttcgccagac
     3601 caataccgaa agcataaata cttaacccgg cagtcatcca taaatacgcg tgcgatgaga
     3661 taaccgttgc cgcagcagcg accaacagac caatcataat cggccagccg cccataatta
     3721 tcagcgaacg tacggtgcgg cgcgaggtca gacgcgctaa cagcaagtta cccgcaatta
     3781 acgccccgaa aataggcact tgcagcaagc catattcata gctgctcaac tgctcgccgg
     3841 taatgatgat aatcggcgac tgggcgatcc acgccagcaa tggcaggcta acgaatccca
     3901 gcgccagcgc ccccgccaca aagcggccgt tcttcagcac cagcttatag tcacgaccga
     3961 gttctttcag tgacagtttc tcgcctatac gcgtggcggt ttcaggcata gctcgttgca
     4021 gaccgaaaaa ggagatcgct gccaatgcgg caaacaaaac aaacatcccc tcccagggca
     4081 gcacatggat ccacgccgcg cccaccagcg gaccaagtag cggagcaatc agcgccacgt
     4141 tcgccatcag cgcggtgatc ttgatacaaa ccgcctcttc gaaagattcc tgaattgcgg
     4201 cgtatcccac agcgccaatg aaacagaggc ttatgccctg caagaagcgc aacagagtga
     4261 attgttcaat gttttgcgcc agtaatattg ccagacaggt gatgataaac cacaccaccc
     4321 ccgccagcat caccggacgg cgaccaatac gatccgacag cggccccagg agccattgta
     4381 aaaacatccc gcccgccaga tatgcggtca ttgaagtagg aacccaatca atgcccgcct
     4441 gatattgttc caccacggcc aacataccgg gttgaatcat atctgccgat ataggttgaa
     4501 aattcgtaaa gcaccagaca gagagggaaa agtaacgcct gacgtccaag cctggcaccg
     4561 gaagctaatt tattttgcat gcaatttctt cgccaataat aatcgcgcag agtttaataa
     4621 aagcgcagct aacgagaaag cgaattttgt agctgaaacc acggttaagc acattcttac
     4681 attattgcga gtatagctac gctttcttta agttttattt aacctatgcc cgttacaatc
     4741 acccaccgta aacaggccgc ttgagggaaa taagacgatg ccgctttacc cagtttaacc
     4801 tgcactttat tctcaacgac ttgcctgtat tggctccctt ttaatcactt tgcgtcggga
     4861 agttatgctg gaaaatttga atctctctct attctctctt attaacgcga cgccagactc
     4921 ggctccgtgg atgatctcgt tggcgatttt tattgctaaa gatttgatta ccgtggtgcc
     4981 gctgctggcc gcggtgcttt ggttgtgggg gcttacagca caacggcaac tggtgataaa
     5041 aatcgctatc gcgctggcgg tcagcctgtt tgtgtcctgg acgatgggac atctttttcc
     5101 gcacgaccga ccctttgtcg aaaatatcgg ctataacttc ctgcatcatg cggcggatga
     5161 ctcattccca agcgaccacg gtacggtgat tttcaccttt gcactggcat ttttatgctg
     5221 gcatcgcctg tggtccggct cacttttaat ggtgctggcc gtcgtcattg cctggtcgcg
     5281 cgtttatctt ggcgtccact ggccgctgga tatgctcggt ggattgctgg caggtatgat
     5341 tggctgcctt agtgcccaga ttatctggca agcgatgggg cataaactct atcaacgtct
     5401 gcaatcgtgg tatcgcttct gttttgcatt accgatccgc aaaggctggg tgcgtgactg
     5461 atctctgcta aaaagtgtag tattgagcgg ctcgcttcaa taactattca gagggattat
     5521 ggaaacacgt cgcgaagagc gtatcgggca gctgctgcaa gaattaaaac gcagcgataa
     5581 gttacatctt aaagacgccg ccgccctgct tggggtttcg gagatgacga ttcgtcgcga
     5641 tctgaacaac cacagtgcgc ccgtcgtttt gctcggcggc tatattgttc tggaaccgca
     5701 tagtgccagc cattacctgt taagcgatca aaaatcccgc ctggtggaag aaaaacgccg
     5761 ggcggcaaaa ctggctgcga cactggtaga acccgatcag accctctttt ttgactgtgg
     5821 caccaccacg ccgtggatta ttgaagcgat tgataatgaa atccctttta ccgccgtttg
     5881 ttattcgcta aatacctttc tggcgctgaa agagaaaccc cattgccgcg catttctgtg
     5941 cggtggtgaa tttcacgcca gcaacgccat tttcaaaccc atcgattttc agcaaacgtt
     6001 gaataatttt tgcccggata tcgcttttta ttccgcggcg ggcgtgcatg tcagtaaagg
     6061 cgctacctgt tttaatcttg aagagttgcc ggtaaaacac tgggccatgt cgatggcgca
     6121 aaagcatgtg ctggttgtcg accacagtaa atttggcaag gtccgtccgg cgcgcatggg
     6181 tgacctgaaa cgctttgata ttgtggtgag tgattgttgc ccggaagatg agtatgtgaa
     6241 gtacgcgcag acgcaccgta ttaagttgat gtattaatga cgtataaccg gatgacgttt
     6301 cgcgccatcc ggttatcaga agattaagag aaccagctgc cgaaccactg atggaatttc
     6361 atcatcacga aatcccacat cctaccaaag aatccgccct cttccacatt ttccatcacg
     6421 atcagcggac gctgctcaat ggatttaccg ttaagctgga aatcaatggt cccgacaacc
     6481 tgaccttttt tcagcggtgc ggtaagctgc ggttccgtta acgtgtagct cgccttcagg
     6541 tttttcagct gcccacgcgg tatggtcact gagcccgctt cgcctgcccc gagattcact
     6601 tcgctcttat caccaaacca gacgcgctga gtcacaaagg tggcatcagg tttaattggc
     6661 gtcacggttt caaagaagcg gaaaccccag gtcaataatt tctcagactc atcggtcagt
     6721 tttcgccccc aacactacgg agattaaacg catatcgccc tgggtagccg aagcaaccag
     6781 attatatccc gcgcctgccg tggttcctgt cttcatgcca tcaacattca gattgctgct
     6841 ccacagcaga cggttacggt taggctgacg aattttgttg aaggtgaact ctttctcttt
     6901 atgaatggcg tactcttccg gcacatcgtg gatcaatgct ttacccagca atgccatatc
     6961 gcgcgcggta ctgaactgcc ccggcgcatc caggccgtgc accgtctgga aggtagtgtt
     7021 ggtcagaccc agttttttgg cataaccatt catcagacca ataaatgact cctggctccc
     7081 ggcaacgtaa tcggccagcg caatacaggc gtcattaccg gactggataa tcacatcttt
     7141 gttcaagtct gccaccgaaa cctgatcgcc cggtttgagg aacattaccg atgaaccacg
     7201 cagtgccgga tttcccgtcg cccaggcatc tttaccgacc gtcaccatat cggtgagttt
     7261 aatcttatcg gccttaagcg cctgcccaac cacatagctg gtcatgattt tagtcaggct
     7321 cgcgggatcc agtttctcat ccgcattgcc ttctgccagc actttaccgc tggcgtaatc
     7381 cattaaaatc catgcacgcg catccacgct cggcgcttca acggtttgtt cggccgcgaa
     7441 tgccgttggg gcaaaaagga ataaaaatgc agaacccgct gcaagaccac gaaggagaga
     7501 ggagtattgc gtcataaatg ccacccgagt atccattcaa aaaaaatacg ttatatcgcc
     7561 gtatgataag ttcggtgatt aataacgcac acacaaactt aaagaaaccg taagttggta
     7621 aagtttttaa agtttatgca atatcctgcc gcttcgctgc ttctggtgtc atttttttgc
     7681 cagctgttgc ttaaaagtta actttacttc accatcggag tcctgttcag cctgtggctg
     7741 cctgtcggaa aaggggtgag tatgattacg ctgtggggtc ggaataattc aaccaacgta
     7801 aaaaagtatt gctgacgctc gaagaactgg aactacctta tgagcaaatt ctcgcgggcc
     7861 gtgagtttgg gataaatcac gatgctgatt ttctggcgat gaaccctaac gggctggtgc
     7921 cgttgttgcg tgacgacgaa agtgatctca ttctttggga atcaaacgcc attgtccgct
     7981 atctggcggc acagtacggg caaaaacgcc tgtggatcga ctcaccggca cgtcgtgcgg
     8041 aagcggaaaa atggatggac tgggcaaacc agacgctcag taatgcccat cgagggatcc
     8101 tgatgggatt agtcagaaca ccaccggaag agcgcgatca ggccgccatt gatgccagtt
     8161 gcaaagagtg cgacgccctg tttgccctgc tcgatgcgga actggcaaaa gtaaaatggt
     8221 tctctggcga cgagtttggt gtgggcgata tcgctatcgc accgttcatc tacaatttgt
     8281 ttaacgttgg cctgacctgg acaccgcgtc caaatctgca acgctggtat cagcaactca
     8341 ctgaacgccc cgcagtgcgc aaagtggtga tgattcccgt tagctaattg cgtgggctaa
     8401 ctttaagtaa ttccccactg gactcgtcgg tgagaacgta taaataaccg tcgggtccag
     8461 tgcgaacatc acgaattcgc tgccctctgt ccgttaaaat acggccatct tctgtcactt
     8521 tgtcgccgtt gacgctcatc acaatgacat ctttatcttt cagcgcgcca ataaataatt
     8581 tttgctgcca ctgggggaat ttatcgctgt tatagaaggc catgccgctc acagcgggcg
     8641 aatctttcca gtaaaaaaca ggttgctcgg tcccggcgac gatctcccct ttcgcttccg
     8701 gtatcttaaa gcctgaatag ttgattcccc aggttgccag cggccagccg tagtttttgc
     8761 ctttttgcgg gatattaatt tcatcaccac cgcgcgggcc atgttcattc agccacagtg
     8821 cattactcca cggattcatc gccattcctt gcggattacg aatgccataa gaccagatct
     8881 cggcgcgcgc accggattcc tttataaaag gattatcatc cgggatttcg ccctgatcgg
     8941 tcagacgcac cagtttgccc tgtaatttat ccagatcctg cgccgtcggg cgctgattgt
     9001 tttcgcccag agcaataaaa agataacctt taccgtcgaa taccagccgc ccgccaaaat
     9061 ggttgccggt agacagtttt ggcatctggc ggaagacggt gcggaagtcg gtcacttttg
     9121 agagatcatc acttaagcgg ccataaccca cagcagttcc ggctttgcca tcatcgccaa
     9181 cttcggaata acttaaccag atgcggcgag actgagcaaa atcaggcgct aaaaccacgt
     9241 ccagcaggcc gccctgcccg tgcgcccaaa cgtccggaac tccggaaagc ggcgcagata
     9301 atccttttcc tgcttgccag tgacgcaact cgccgccgcg cagagtgatt aacataccgt
     9361 gattatcggg taaaaaggcc agtgcccagg gatggtcgag tttgtcttgc agtacttcga
     9421 catttaccgt tgcaggagcc gcccagagag cggaagaaag acaaataagg ggcacaagga
     9481 aaaaggattg tcgatgca
//
LOCUS       DADMJB010000161         9179 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.164, whole genome shotgun sequence.
ACCESSION   DADMJB010000161 DADMJB010000000
VERSION     DADMJB010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9179)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9179)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9179
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.164"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..1005
                     /locus_tag="JN078_003437"
     CDS             <1..1005
                     /locus_tag="JN078_003437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418144.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3748 domain-containing protein"
                     /protein_id="HAY9042515.1"
                     /translation="PKSEKYVFIHGPENPDETWYYDFHHRRGVIAEGGKVSNLDAMDI
                     TAPYTPGALRGGSHVHVFSPNGERVSFTYNDHVMHELDPALDLRNVGVAAPFGPVNVQ
                     KQHPREYSGSHWCVLVSKTTPTPQPGSDEINRAYEEGWVGNHALAFIGDTLSPKGEKV
                     PELFIVELPQDEAGWKAAGDAPLSGTETTLPAPPRGVVQRRLTFTHHRAYPGLVNVPR
                     HWVRCNPQGTQIAFLMRDDNGIVQLWLISPQGGEPRQLTHNKTDIQSAFNWHPSGEWL
                     GFVLDNRIACAHAQSGEVEYLTESHANPPSADAVVFSPDGQWLAWMEGGQLWITETDR
                     "
     gene            complement(1007..1339)
                     /locus_tag="JN078_003438"
     CDS             complement(1007..1339)
                     /locus_tag="JN078_003438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418143.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HAY9042516.1"
                     /translation="MIRNVLLAFMICSGMTLLGGCSSVMSHTGGKEGTYPGTRASATM
                     IGDDETNWGTKSLAILDMPFTAVMDTLLLPWDVFRKDSSVRSHVEKSEANAQATNAVI
                     PPARMPDN"
     gene            1645..2058
                     /gene="ibpA"
                     /locus_tag="JN078_003439"
     CDS             1645..2058
                     /gene="ibpA"
                     /locus_tag="JN078_003439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006687722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock chaperone IbpA"
                     /protein_id="HAY9042517.1"
                     /translation="MRNFDLSPLYRSAIGFDRLFNHLENNQSQSNGGYPPYNVELVDE
                     NHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLA
                     ENIHVRGANLVNGLLYIDLERVIPEAKKPRRIEIN"
     gene            2170..2598
                     /gene="ibpB"
                     /locus_tag="JN078_003440"
     CDS             2170..2598
                     /gene="ibpB"
                     /locus_tag="JN078_003440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709512.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock chaperone IbpB"
                     /protein_id="HAY9042518.1"
                     /translation="MRNFDLSPLMRQWIGFDKLANALQNAGESQSFPPYNIEKSDDNH
                     YRITLALAGFRQEDLEIQLEGTRLSVKGTPEQPKEEKKWLHQGLMNQPFSLSFTLAEN
                     MEVSGATFVNGLLHIDLIRNEPEPIAAQRIAISERPALNS"
     gene            2794..4455
                     /locus_tag="JN078_003441"
     CDS             2794..4455
                     /locus_tag="JN078_003441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312652.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HAY9042519.1"
                     /translation="MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVG
                     HFVSQAGMTLSSDMLHVIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVI
                     IGGLVTAILHKLFDIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSY
                     AMAYPFGICGILFTMWMLRVIFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHD
                     LAIKDVPILNGDKIICSRLKREETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQ
                     EVDTSLSTKGTDLRVERVVVTNENVLGKRIRDLHFKERYDVVISRLNRAGVELVASGD
                     ISLQFGDILNLVGRPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVP
                     GFPAALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKS
                     GGDFVNTLVNGEGLSWIGYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPP
                     ALAFANNLHPTSGAPALSYATVYPLVMFLRIITPQLLAVLFWSIG"
     gene            complement(4452..5168)
                     /locus_tag="JN078_003442"
     CDS             complement(4452..5168)
                     /locus_tag="JN078_003442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAY9042520.1"
                     /translation="MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRK
                     AIDLLVAWGLVVRRHGSGTYLVRKDVLHQTASLTGLVEVLKRQGKTVTSQVLIFEIMP
                     APPAIASQLRIQINEQIYFSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEY
                     IEQECGILIGGNYESLTPVLADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMF
                     RNASEYQVEYHLRRLHPEKS"
     gene            5463..7079
                     /locus_tag="JN078_003443"
     CDS             5463..7079
                     /locus_tag="JN078_003443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312650.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HAY9042521.1"
                     /translation="MLSQIQRFGGAMFTPVLLFPFAGIVVGLAILLQNPMFVGESLTD
                     PNSLFAQIVHIIEEGGWTVFRNMPLIFAVGLPIGLAKQAQGRACLAVMVSFLTWNYFI
                     NAMGMIWGSYFGVDFTQDAVAGSGLTMMAGIKTLDTSIIGAIIISGIVTALHNRLFDK
                     KLPVFLGIFQGTSYVVIIAFLVMIPCAWLTLLGWPKVQMGIESLQAFLRSAGALGGWV
                     YTFLERILIPTGLHHFIYGQFIFGPAAVEGGIQMYWAQHLQEFSLSAEPLKSLFPEGG
                     FALHGNSKIFGAVGISLAMYFTAAPENRVKVAGLLIPATLTAMLVGITEPLEFTFLFI
                     SPLLFAVHALLAASMSTVMYLFGVVGNMGGGLIDQVLPQNWIPMFSNHADMMLTQIAI
                     GLCFTLLYFVVFRTLILQFNMCTPGREDAEVKLYSKAEYKASRGQTTAAEPKKELDQA
                     AGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVII
                     GLHVSQLREQLDSLINSHQSAENVAITEAV"
     gene            7079..8402
                     /locus_tag="JN078_003444"
                     /pseudo
     CDS             7079..8402
                     /locus_tag="JN078_003444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312649.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-alpha-glucosidase"
     gene            complement(8399..8473)
                     /locus_tag="JN078_003445"
                     /pseudo
     CDS             complement(8399..8473)
                     /locus_tag="JN078_003445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709516.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
     gene            complement(8533..8964)
                     /gene="tnpA"
                     /locus_tag="JN078_003446"
                     /pseudo
     CDS             complement(8533..8964)
                     /gene="tnpA"
                     /locus_tag="JN078_003446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313209.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
     gene            8972..>9179
                     /locus_tag="JN078_003447"
     CDS             8972..>9179
                     /locus_tag="JN078_003447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001458895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAY9042522.1"
                     /translation="MKRLQAFKFQLRPGGQQEREMRRFAGACRFVFNRALARQNENHE
                     AGNKYIPYGKMASWLVEWKNATETQ"
BASE COUNT         2138 a         2288 c         2416 g         2337 t
ORIGIN      
        1 ccgaagtcag agaaatatgt tttcatccat ggcccggaaa atcctgatga aacatggtat
       61 tacgatttcc atcatcgacg cggagtcatt gctgaaggcg gcaaggtgag caatctcgat
      121 gcaatggata ttaccgcgcc gtatacgcca ggagcgctgc gcggcggcag ccatgtgcat
      181 gtctttagcc cgaacggtga aagggtgagc tttacctata acgaccatgt aatgcatgaa
      241 ctcgatccgg cgctggattt gcgaaacgtc ggtgttgctg cgccgtttgg cccggtcaac
      301 gtacaaaagc agcatccgcg tgaatacagc ggtagccact ggtgcgtgct ggtgagtaaa
      361 accacgccca cgccgcagcc tggcagcgat gaaatcaatc gtgcttatga agaaggatgg
      421 gtaggaaatc acgcgctggc gtttattggc gacacacttt cgccaaaggg cgagaaagtg
      481 ccggagctgt ttatcgttga gttaccgcaa gatgaagctg gctggaaagc ggcaggtgat
      541 gcgccgttaa gtggaacgga aaccaccctg cccgcgccac cgcgcggcgt cgtgcagcga
      601 cgtttaacct ttacccacca tcgggcttat ccggggttag tcaacgtccc gcgccactgg
      661 gtgcgctgta atccgcaggg tacgcaaatc gcgtttttaa tgcgtgatga taacggcatt
      721 gtgcaactgt ggcttatctc gccacagggc ggcgagccgc gccagttaac ccataacaaa
      781 acggatattc agtctgcatt taactggcat ccgtcaggag aatggttggg ctttgtgctg
      841 gataatcgaa ttgcttgtgc ccatgcgcaa agtggcgagg ttgagtattt aaccgaaagc
      901 cacgccaatc caccttctgc ggacgccgtg gtcttctcgc cggatggtca atggctggcg
      961 tggatggaag gcggccagct gtggatcacc gaaactgatc gctaaatcag ttatcaggca
     1021 ttctggccgg tggaataacc gcattggtgg cttgcgcgtt ggcttcgctt ttttcaacgt
     1081 gtgagcgcac cgagctgtct ttgcggaaca catcccacgg cagtaaaagc gtgtccatca
     1141 cagcggtaaa cggcatatcg agaatcgcca gcgacttagt gccccagttg gtttcatcgt
     1201 cgccaatcat ggttgcgctg gcgcgggtgc cgggatacgt tccttctttc cctccggtat
     1261 gggacatcac gctggagcat cctccgagta atgtcattcc gctgcatatc atgaacgcta
     1321 acaacacatt tcttatcata ataaattcat ctgttgatcg tgggtgttgg cctgatgagt
     1381 tatagcgatc ccttgctgaa aataacatca tcattacgtc gcactgtggc ggctatcgca
     1441 ctttaacgtt tcgtgctgcc ccctcagtct atgcaataga ccataaactg caaaaaaaag
     1501 tccgctgata aggcttgaaa agttcatttc cagacccatt tttacatcgt agccgatgag
     1561 gacgcgcctg atgggtgttc tggctacctg acctgtccat tgtggaaggt attacattct
     1621 cgctgatttc aggagctatt gattatgcgt aactttgatt tatccccgct ttaccgttct
     1681 gctattggat ttgaccgttt gtttaaccac ttagaaaaca accagagcca gagtaatggc
     1741 ggctaccctc cgtataacgt tgaactggta gacgaaaacc attaccgcat tgctatcgct
     1801 gtggctggtt ttgctgagag cgaactggaa attaccgccc aggataatct gctggtggtg
     1861 aaaggtgctc acgccgacga acaaaaagag cgcacctatc tgtaccaggg catcgctgaa
     1921 cgcaactttg aacgcaaatt ccagttagct gagaacattc atgttcgtgg ggctaacctg
     1981 gtaaatggtt tgctgtatat cgatctcgaa cgcgtgattc cggaagcgaa aaaaccgcgc
     2041 cgtatcgaaa tcaactaatt ccctaaggcc gcctgacgcg gcctgacatc tccatgctcg
     2101 ccgtcaggga gcatatgcga atcttcggat ttgcaggtac ttactcgctt cttagaagga
     2161 gaaatgacta tgcgtaactt cgatttatcc ccactgatgc gtcaatggat cggttttgac
     2221 aaactggcca acgcactgca aaacgccggt gaaagccaga gcttcccgcc gtacaacatt
     2281 gagaaaagcg acgataacca ctaccgcatt acccttgcgc tggcaggttt ccgtcaggaa
     2341 gatttagaga ttcaactgga aggtacgcgc ctgagcgtaa aaggcacgcc ggagcagcca
     2401 aaagaagaga aaaaatggct gcatcaaggg cttatgaatc agccatttag cctgagcttt
     2461 acgctggctg aaaatatgga agtctctggc gcaaccttcg taaacggttt actgcatatt
     2521 gatttaattc gtaatgagcc tgaacccatc gcagcgcagc gtatcgctat cagcgaacgt
     2581 cccgcgttaa atagctaact agctattctc tttgccccgc cattctggtg gggctttttt
     2641 tgtctttctt cttcaacaat gcgttaaatt tcgactgttt aagatatttc ggcacgttct
     2701 ttcccgtgat aatgtgcgct ataaggcaaa tctgcttcac cgattcagcc ataatccgta
     2761 gcaattaaaa tgttatctca agagaaatgg acgatgagtg atatagcatt aacggtcagt
     2821 attctggctt tggtggcagt cgtcggtttg tttatcggca acgtcaaatt tcgcggcata
     2881 ggattaggta ttggcggcgt gctgtttggt gggatcatcg tcggccattt tgtttctcag
     2941 gcggggatga cattaagtag cgatatgctg catgttattc aggaatttgg cctgatcctg
     3001 ttcgtttata ccatcgggat tcaagtaggg ccgggcttct ttgcctcatt gcgcgtctcc
     3061 ggattacgcc tcaacctgtt tgctgttctg atcgtcatca tcggtggtct ggttaccgcc
     3121 atcctgcata aactgtttga tattccactg ccggtagtgc tggggatttt ctccggtgcg
     3181 gttaccaata cgccagcgct gggggcaggg cagcagatct tgcgcgacct gggtacacca
     3241 atggaaatgg tcgatcagat ggggatgagt tacgcgatgg cgtatccatt cggcatttgc
     3301 gggattttgt tcaccatgtg gatgttgcgg gttattttcc gcgtcaatgt cgagacagaa
     3361 gctcagcagc acgagtcttc acgcaccaat ggcggcgcgc tgatcaagac tatcaatatt
     3421 cgcgttgaga accctaacct gcatgattta gctattaaag atgtaccgat tctcaacggc
     3481 gacaaaatta tctgctcgcg tctgaaacgc gaagaaaccc taaaagttcc ttcgccagat
     3541 accattatcc aactgggcga tttgctgcat ctggtggggc agccagcgga tttacataat
     3601 gcgcaactgg tgattggtca ggaggtcgat acttcgctgt ccacgaaagg cactgatttg
     3661 cgcgtcgagc gtgtggtggt caccaatgaa aacgtgctcg gaaaacgtat tcgcgacctg
     3721 cactttaaag aacgctatga cgttgttatc tcgcgcctga accgtgccgg ggtcgaactg
     3781 gtcgccagtg gcgatatcag cctgcagttc ggcgatatcc tcaatctggt ggggcgtccg
     3841 tccgcaattg atgccgttgc caatgtgctg gggaatgcgc agcaaaaact gcaacaggtt
     3901 cagatgctgc cagtgtttat tggcatcggg cttggcgtat tgttaggttc tattcccgtc
     3961 tttgtgcctg ggttcccggc cgcgttgaaa ctggggctgg cgggcggtcc gctgattatg
     4021 gcgttgatcc tcgggcgtat cggcagtatc ggcaagctgt actggtttat gccgccaagt
     4081 gccaacctcg cgctgcggga gctggggatc gtgctgttcc tctcggtcgt tggtctgaaa
     4141 tctggtgggg attttgtgaa taccctggtc aatggcgaag ggctaagctg gattggttat
     4201 ggtgccctga tcaccgccgt tccgctgatt actgttggca ttctggcgcg gatgttagcc
     4261 aaaatgaatt acctgaccat gtgcgggatg ctggcaggtt ccatgaccga tcctccggcg
     4321 ctggcgtttg ctaataatct tcatccaacc agtggtgcgc cggcgctctc ttacgccact
     4381 gtctatccgt tagtgatgtt tctgcgaatt atcacccccc aattactggc ggtgctcttc
     4441 tggagtatcg gttaactctt ttccgggtgg agtcgccgta aatggtactc cacctggtat
     4501 tcgctggcat ttctgaacat cactgaataa ttcaaaaact ccccgctctc gctatatgac
     4561 aacgaggtga tccgcagcag tggcgtgtgt tccgctacct tcatttgccg cgccagcagt
     4621 ctatcggcga gcaccggcgt caggctttca taattaccgc caatcaaaat cccacactct
     4681 tgttcaatat attcaaactt cgacccttcc agatgttgca gcgaaagatt acggaacagt
     4741 ttaaccggca tatagctgtc ttccagcatc agcggtttcc cttccacaaa acgaacgcga
     4801 cgggagaagt agatctgctc gttgatttga atccgtaact ggctggcaat ggccggaggc
     4861 gcaggcatga tttcaaaaat cagcacctgg ctggtgaccg tttttccctg ccgttttaac
     4921 acctccacca gtccggtcag gctggcggtt tgatgcagca catctttgcg caccaggtaa
     4981 gtgccgctgc cgtggcggcg gaccaccagc ccccacgcta ccagcaggtc aatcgcttta
     5041 cggatggtca tccgggatac tgcaaattct tccgccaact ttttttcacc gggaagaagg
     5101 ctgtttagcg tgaaatccgc ggaattaagt cgaattctta accgctccgc aatgcttttg
     5161 tagatcatct ctagatctct tttttgcctg caagcccggg taatgcgccc acaagttctg
     5221 cttaatcgat tgaaaaaaca tcttttttta aagatgtgtt cgatgctgtg taccagtgct
     5281 cacagatgtc tactttttcg cgaaaacgta gatctctacc gcccaacgaa aagcatgaaa
     5341 gcgatcacga atcccattgg gtcgtcatgt tctgccgatc gcatcttcct atcctcgctc
     5401 caggcctgcc gcataaccaa tcaggcttcc tacttacaga attgagaaaa gaggatgtgg
     5461 aaatgctcag tcaaattcaa cgctttggcg gcgcgatgtt cacgccagtg ctgctgtttc
     5521 ccttcgccgg gattgtggtg ggtcttgcca tcttgctgca aaacccgatg tttgtcgggg
     5581 aatcactgac cgatccgaac agtttattcg cgcaaatcgt acacattatt gaagagggcg
     5641 gttggacggt attccgtaat atgccgctga tttttgctgt cggtttaccc attggccttg
     5701 ctaagcaagc gcaggggcgt gcttgtctgg cggtgatggt gagtttcctg acctggaact
     5761 atttcatcaa cgcgatggga atgatctggg gaagctactt cggcgtcgat ttcactcagg
     5821 acgcggtggc aggtagcggt ctgacaatga tggccgggat taaaaccctc gataccagca
     5881 ttatcggcgc aattatcatt tccggcattg tgacggcgct gcataaccgt ctgttcgata
     5941 aaaaactgcc ggtttttctc ggcattttcc aggggacgtc ttatgtggtg attatcgcct
     6001 tcctggtgat gatcccctgt gcctggctga cgttgctcgg ttggccaaaa gtacaaatgg
     6061 ggattgaatc tctgcaagcg ttcctgcgtt cggcgggtgc gcttgggggg tgggtttaca
     6121 ccttcctcga acgtattctg atcccaaccg gtttacacca cttcatctac ggacagttta
     6181 tctttggtcc ggcagctgtt gaaggcggca ttcagatgta ctgggcgcag catctgcaag
     6241 agttcagtct gagcgccgag ccgctgaaat cgttgttccc ggaaggcggt tttgccctgc
     6301 acggtaactc aaaaatcttt ggtgccgtgg gcatttcttt agcgatgtac ttcactgccg
     6361 caccggaaaa tcgggtaaaa gtggcgggct tgctgattcc cgcaacctta accgccatgc
     6421 tggtgggaat taccgaaccg ctggaattta ccttcctgtt catttcaccg ttgctgtttg
     6481 cggtacacgc cttgctggcg gcctcaatgt cgaccgtgat gtatctcttt ggtgtggtgg
     6541 gcaacatggg cggaggtctg attgaccagg ttttaccgca aaactggatc ccgatgttca
     6601 gcaaccacgc ggatatgatg ctgacccaaa tcgccattgg gttgtgcttt accctgctgt
     6661 acttcgtggt tttccgcaca ctgattctgc aattcaacat gtgcacgccg ggacgtgaag
     6721 atgcggaagt gaaactctac tcaaaagccg aatacaaagc ctcgcgaggc caaaccaccg
     6781 ctgcagagcc aaaaaaagag ctggatcagg ctgccggtat cctgcaagcc ctgggcgggg
     6841 tcggcaatat ctccagcatt aacaattgcg cgacgcgttt acgtattgca ctgcatgaca
     6901 tgtcacaaac gctggatgac gaagtcttta aaaagctggg agcgcacggc gtcttccgta
     6961 gtggcgatgc cattcaggtg atcattggtc tgcatgtatc ccagctgcgt gaacagctcg
     7021 atagcttaat taattctcat caatcagcag aaaatgttgc cattacggag gcagtataat
     7081 gaccaaattc tcagtggttg tcgcaggcgg tggaagcacc tttacgccag gcatcgtgtt
     7141 gatgctcctg gcgaatcagg accgtttccc gcttcgtgca ctgaaatttt atgataacga
     7201 tggtgcgcgg caggaagtga ttgccgaagc ctgtaaagtc atccttaaag agaaagcgcc
     7261 ggacattgcg tttagttaca ccaccgatcc tgaagtggca ttcagcgacg ttgattttgt
     7321 catggcgcac atccgcgtcg gcaaataccc gatgcgcgaa ctggatgaaa aaatcccgct
     7381 gcgccacggc gttgttggtc aggaaacttg cggacccggc ggaatagcgt acggcatgcg
     7441 ttccattggc ggcgtcctgg aactggtgga ttatatggaa aaatattcac caaatgcctg
     7501 gatgctcaac tactccaacc cggcagcaat tgtcgcagaa gccacgcgtc gtctgcgccc
     7561 gaatgcgaaa atcctcaaca tctgtgacat gccaatcggt attgaaagcc ggatggcgca
     7621 aattgttggg ctgcaagatc gcaaacagat gcgcgtgcgc tactacggcc tgaaccactt
     7681 tggctggtgg acatcaattg aagatttgca gggcaacgac ctgatgcccc agctgcggca
     7741 atatgtctct aagcacggtt atgttccacc gcagcaagat acacatactg aagcgagctg
     7801 gaacgacacc tatgcaaaag cgcgggatgt ccaggcactg gacccggata cattgccgaa
     7861 cacctatctg aaatattatc tcttcccgga ttatgttgtt cagcattcca accctgaaca
     7921 tacccgcgcg aatgaggtga atggaacatc gcgagaaaca ggttttcgat gcttgccgcg
     7981 ccattacagc ggcaggaaat tcagcggcgg ccaagctgga gattgacgaa catgcgtcat
     8041 acatcgtcga tctggcggcg gcaattgcct tcaacactca ggagcggatg ttgctgattg
     8101 tgcctaacaa cggggcaatc cataactttg atgatgaagc gatggtcgag atcccgtgtc
     8161 tggtcgggca caacggacca gaaccactgg tggtcggcga tatcccgcag tttcagaaag
     8221 ggttaatgag tcagcaagtg gcggtggaaa aactggtcgt ggacgcctgg gaacagcgtt
     8281 catatcagca cctgtggcag gcgattacgt tatcgaaaac ggtaccgagc gcctcggtcg
     8341 ccaaagctat tctggatgag ttgctggagg ccaacaaagc gtactggcca gagttacgtt
     8401 aattgtgtgg actggcatcc gttgggtgct ggtccgtatt ctttagcacg gctgacggcg
     8461 cataaccaaa tttatccggt gcgccgtaaa accccgtcct tcagggcggg gatataaggc
     8521 gcggttttcc acctaaccag gtgtttgctg ttgttcaatg tattggcgga tgacggatat
     8581 tggcgcacct ccgcagctat tggcaaaata gccaggactc cacaaaacgc ctttgtagta
     8641 atacctgact gcaatatctg gtcgatctcg tcgcagtaac ctacccgata cgcctttgag
     8701 gctgtttacc agactggata tcgccagttt gggaggatag ttaattaaca aatggacgtg
     8761 atctggttcg ccatccattt aaaccagttc agcttcaaaa tcagcacata catttgaaaa
     8821 gtaagtgcgt agtttttctg tcgcgtcata gtcaaaaatc tgacgtcggt atttggtgac
     8881 aaagaccagg tgaacatgca tcaggaaaac acaatgcctt ccacgccgga tatcggtttc
     8941 ttttttcaca gaccaaagta tcatttggcc tgtgaaacga ctacaagcat ttaaattcca
     9001 gttaagaccc ggtggtcaac aggagcgtga aatgaggcgc ttcgcaggcg catgtcgttt
     9061 cgttttcaat cgtgctctgg cacgtcagaa tgagaatcat gaggccggta ataaatacat
     9121 cccttacggg aaaatggctt cctggctggt tgagtggaaa aatgccactg aaacgcaat
//
LOCUS       DADMJB010000162         9129 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.165, whole genome shotgun sequence.
ACCESSION   DADMJB010000162 DADMJB010000000
VERSION     DADMJB010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9129)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9129)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9129
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.165"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..293)
                     /locus_tag="JN078_003448"
     CDS             complement(<1..293)
                     /locus_tag="JN078_003448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013741669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAY9042523.1"
                     /translation="MLNTRVHQSEVSMATDTPRIPEQGVATLPDEAWERARRRAEIIS
                     PLAQSETVGHEAADMAAQALGLSRRQVYVLIRRARQGSGLVTDLVPGQSGGGKG"
     gene            complement(332..1000)
                     /locus_tag="JN078_003449"
     CDS             complement(332..1000)
                     /locus_tag="JN078_003449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAY9042524.1"
                     /translation="MAQAAARGQLDLHYQPLVDLRDHRIAGAEALMRWRHPRLGLLPP
                     GQFLPLAESFGLMPEIGAWVLGEACRQMHKWQGPAWQPFRLAINVSASQVGPTFDDEV
                     KRVLADMALPAELLEIELTESVAFGNPALFASFDALRAIGVRFAADDFGTGYSCLQHL
                     KCCPITTLKIDQSFVARLPDDARDQTIVRAVIQLAHGLGMDVIFRRRLHQLIGRNGCC
                     AASS"
     gene            complement(1036..1272)
                     /gene="merE"
                     /locus_tag="JN078_003450"
     CDS             complement(1036..1272)
                     /gene="merE"
                     /locus_tag="JN078_003450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="broad-spectrum mercury transporter MerE"
                     /protein_id="HAY9042525.1"
                     /translation="MNAPDKLPPETRQPVSGYLWGALAVLTCPCHLPILAAVLAGTTA
                     GAFLGEHWGVAALALTGLFVLAVTRLLRAFRGGS"
     gene            complement(1269..1631)
                     /gene="merD"
                     /locus_tag="JN078_003451"
     CDS             complement(1269..1631)
                     /gene="merD"
                     /locus_tag="JN078_003451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mercury resistance co-regulator MerD"
                     /protein_id="HAY9042526.1"
                     /translation="MSAYTVSQLAHNAGVSVHIVRDYLVRGLLRPVACTTGGYGVFDD
                     AALQRLCFVRAAFEAGIGLDALARLCRALDAADGAQAAAQLAVLRQLVERRRAALAHL
                     DAQLASMPAERAHEEALP"
     gene            complement(1649..3343)
                     /locus_tag="JN078_003452"
     CDS             complement(1649..3343)
                     /locus_tag="JN078_003452"
                     /EC_number="1.16.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004636758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mercury(II) reductase"
                     /protein_id="HAY9042527.1"
                     /translation="MSTLKITGMTCDSCAVHVKDALEKVPGVQSADVSYAKGSAKLAI
                     EVGTSPDALTAAVAGLGYRATLADAPSVSTPGGLLDKMRDLLGRNDKTGSSGALHIAV
                     IGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESP
                     FDGGIAATTPTIQRTALLAQQQARVDELRHAKYEGILEGNPAITVLHGSARFKDNRNL
                     IVQLNDGGERVVAFDRCLIATGASPAVPPIPGLKDTPYWTSTEALVSETIPKRLAVIG
                     SSVVALELAQAFARLGAKVTILARSTLFFREDPAIGEAVTAAFRMEGIEVREHTQASQ
                     VAYINGEGDGEFVLTTAHGELRADKLLVATGRAPNTRKLALDATGVTLTPQGAIVIDP
                     GMRTSVEHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALNLTAMPAVVFTDPQV
                     ATVGYSEAEAHHDGIKTDSRTLTLDNVPRALANFDTRGFIKLVVEEGSGRLIGVQAVA
                     PEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFNKDVKQLSCCAG"
     gene            complement(3395..3817)
                     /gene="merC"
                     /locus_tag="JN078_003453"
     CDS             complement(3395..3817)
                     /gene="merC"
                     /locus_tag="JN078_003453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016239395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organomercurial transporter MerC"
                     /protein_id="HAY9042528.1"
                     /translation="MGLMTRIADKTGALGSVVSAMGCAACFPALASFGAAIGLGFLSQ
                     YEGLFISRLLPLFAALAFLANALGWFSHRQWLRSLLGMIGPAIVFAATVWLLGNWWTA
                     NLMYVGLALMIGVSIWDFVSPAHRRCGPDGCELPAKRL"
     gene            complement(3853..4128)
                     /gene="merP"
                     /locus_tag="JN078_003454"
     CDS             complement(3853..4128)
                     /gene="merP"
                     /locus_tag="JN078_003454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mercury resistance system periplasmic binding
                     protein MerP"
                     /protein_id="HAY9042529.1"
                     /translation="MKKLFASLALAAAVAPVWAATQTVTLAVPGMTCAACPITVKKAL
                     SKVEGVSKVDVGFEKREAVVTFDDTKASVQKLTKATADAGYPSSVKQ"
     gene            complement(4142..4492)
                     /locus_tag="JN078_003455"
     CDS             complement(4142..4492)
                     /locus_tag="JN078_003455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011111453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mercuric transport protein MerT"
                     /protein_id="HAY9042530.1"
                     /translation="MSEPQNGRGALFAGGLAAILASTCCLGPLVLVALGFSGAWIGNL
                     TVLEPYRPLFIGAALVALFFAWKRIYRPVQACKPGEVCAIPQVRATYKLIFWIVAVLV
                     LVALGFPYVVPFFY"
     gene            4564..4998
                     /gene="merR"
                     /locus_tag="JN078_003456"
     CDS             4564..4998
                     /gene="merR"
                     /locus_tag="JN078_003456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hg(II)-responsive transcriptional regulator"
                     /protein_id="HAY9042531.1"
                     /translation="MENNLENLTIGVFAKAAGVNVETIRFYQRKGLLREPDKPYGSIR
                     RYGEADVVRVKFVKSAQRLGFSLDEIAELLRLDDGTHCEEASSLAEHKLKDVREKMAD
                     LARMETVLSELVCACHARKGNVSCPLIASLQGEAGLARSAMP"
     gene            6001..6243
                     /locus_tag="JN078_003457"
     CDS             6001..6243
                     /locus_tag="JN078_003457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000844627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase"
                     /protein_id="HAY9042532.1"
                     /translation="MKTAALDLARERQAHEAGARTRATAHERTPQQERQKAAREAERG
                     REAWTLGQGMKKPVAGCYGRLTRWKGGGDVVYMALL"
     gene            complement(6275..6925)
                     /gene="tetR(A)"
                     /locus_tag="JN078_003458"
     CDS             complement(6275..6925)
                     /gene="tetR(A)"
                     /locus_tag="JN078_003458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000164043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance transcriptional
                     repressor TetR(A)"
                     /protein_id="HAY9042533.1"
                     /translation="MTKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWH
                     FRNKRALLDALAEAMLAENHTHSVPRADDDWRSFLIGNARSFRQALLAYRDGARIHAG
                     TRPGAPQMETADAQLRFLCEAGFSAGDAVNALMTISYFTVGAVLEEQAGDSDAGERGG
                     TVEQAPLSPLLRAAIDAFDEAGPDAAFEQGLAVIVDGLAKRRLVVRNVEGPRKGDD"
     gene            7031..8230
                     /gene="tet(A)"
                     /locus_tag="JN078_003459"
     CDS             7031..8230
                     /gene="tet(A)"
                     /locus_tag="JN078_003459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000804064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline efflux MFS transporter Tet(A)"
                     /protein_id="HAY9042534.1"
                     /translation="MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAH
                     YGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG
                     RIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPH
                     APFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAV
                     FFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGE
                     RRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQG
                     QLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRRGLWSG
                     AGQRADR"
     gene            complement(8262..9122)
                     /locus_tag="JN078_003460"
     CDS             complement(8262..9122)
                     /locus_tag="JN078_003460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000493383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HAY9042535.1"
                     /translation="MFTAIAPAIWGSTYIVTTQYLPNFSPMTVAMLRALPAGLLLVMI
                     VRQIPTGIWWMRIFILGALNISLFWSLLFISVYRLPGGVAATVGAVQPLMVVFISAAL
                     LGSPIRLMAVLGAICGTAGVALLVLTPNAALDPVGVAAGLAGAVSMAFGTVLTRKWQP
                     PVPLLTFTAWQLAAGGLLLVPVALVFDPPIPMPTGTNVLGLAWLGLIGAGLTYFLWFR
                     GISRLEPTVVSLLGFLSPGTAVLLGWLFLDQTLSALQIIGVLLVIGSIWLGQRSNRTP
                     RARIACRKSP"
BASE COUNT         1697 a         2890 c         2884 g         1658 t
ORIGIN      
        1 cctttacctc caccggactg gccgggcacc agatccgtca cgaggccgct gccttgccgg
       61 gcacgccgga tcagaacgta tacctggcgc cgagacaagc ccagcgcctg agccgccata
      121 tcggccgctt cgtgcccgac cgtctccgac tgcgccaacg gactgatgat ctccgcacga
      181 cggcgcgcac gctcccaagc ctcatcaggc agagtggcca cgccttgttc tggaatccgt
      241 ggggtgtccg tcgccatgct cacctcgctt tggtgcacac gagtattgag catagtcgag
      301 attggtgcag atcacttctg atattgaact gtcaggagct ggctgcacaa cagccattac
      361 gcccaatcaa ctggtgcagt cgtcttctga aaatgacatc catgcccagc ccgtgcgcga
      421 gctggatcac cgcccgcacg atagtttggt cacgggcatc atccgggagc ctggcgacaa
      481 aggattggtc gattttcaat gtggtgatgg ggcagcattt cagatgttgc aggcaggaat
      541 agccggtgcc gaagtcgtcg gcggcgaagc gcacgccgat ggcgcgcaag gcgtcgaaac
      601 tggcgaacag ggctggattg ccgaatgcga ccgattcggt cagttcgatc tccagaagct
      661 cggcgggcag ggccatatcg gccagcaccc gctttacctc gtcgtcgaac gttggcccaa
      721 cctggctggc ggacacattg atggcaagac ggaacggttg ccatgccggt ccttgccact
      781 tgtgcatctg gcgacaggcc tcgcccagca cccacgcgcc tatttccggc atcaggccga
      841 acgactcggc cagcggcagg aactggccgg gcggcaacag gccaagcctc ggatgccgcc
      901 agcgcatcaa cgcttccgcg ccagcgatcc ggtgatcgcg cagatcgacc agcggctggt
      961 aatgcaggtc aagctgtccg cgcgccgccg cctgcgccaa ctcggccgcc gtccatccgg
     1021 cgggctgcga actcgtcatg atccgccccg gaaggcgcgc agcagccgcg ttacggccag
     1081 aacgaacaag ccggtcagcg cgagcgcggc aacaccccaa tgctcgccaa ggaaggcacc
     1141 ggcggtcgtc ccggccagca cggcggcgag aatcggcaga tggcaggggc aggtcaacac
     1201 ggccagcgca ccccacaggt agccggaaac gggttggcgc gtctcgggcg gcagtttgtc
     1261 aggggcgttc acggcaatgc ctcctcgtgc gcccgctcgg ctggcatgga ggccagttgc
     1321 gcgtccagat gggccaacgc cgcgcgccgc cgctcgacca actggcgcag cacggcaagc
     1381 tgcgctgcgg cttgtgcgcc gtccgctgcg tcgagcgcac ggcacagccg cgccagggca
     1441 tccaggccga tacccgcctc gaaggccgcg cgcacgaagc acagccgttg caaggccgca
     1501 tcgtcgaaca cgccgtagcc gcccgtggtg caggccaccg gccgtaacaa gccgcgcacc
     1561 aggtagtcgc gcacgatatg tacgctcacc ccagcgttat gggccagttg cgataccgtg
     1621 taggcgctca tcgcacacct ccttgtcctc acccggcgca gcaggaaagc tgcttcacat
     1681 ccttgttgaa ggtctgcgcc gcgagcttca acccttcgac catcgtcagg taggggaaca
     1741 actggtcggc cagttcctgc accgtcatcc ggttgcgaat cgccagtgcg gccgtctgga
     1801 tcagttcgcc cgcttccggg gccactgcct gcacgccgat cagtcgtccg ctgccttctt
     1861 caaccaccag tttgatgaag ccgcgcgtgt cgaagttggc gagcgcgcgc ggcacgttgt
     1921 ccagcgttag cgtgcgacta tcagttttga tgccgtcatg gtgcgcttcc gcctcgctgt
     1981 agcctacggt cgccacttgc gggtcggtga acaccacggc cggcatcgcg gtcaggttca
     2041 gggccgcgtc accgccggtc atgttgatcg cggcgcgagt gccggccgct gccgccacat
     2101 agacgaactg cggctggtcg gtgcagtcgc ctgcggcgta gatgtgttcc acgcttgtac
     2161 gcatgccggg gtcgatgacg atagcgcctt gcggggtgag cgtgacgccc gtcgcatcca
     2221 gtgccagctt gcgtgtgttg ggcgcgcggc cggtggcgac cagcagcttg tcggcgcgca
     2281 gttcgccgtg cgccgtggtg agcacgaatt cgccgtcccc ttcaccattg atatacgcga
     2341 cctggctggc ctgggtgtgt tccctcacct cgatgccctc catgcggaat gcggccgtga
     2401 cggcttcgcc tatagctggg tcttcgcgga agaacagcgt gctgcgagcc aggatcgtca
     2461 ccttcgctcc gagtcgggcg aacgcctgcg ccagctccag cgccaccact gatgagccaa
     2521 tcacggccag gcgcttagga atcgtctcgc tgaccagcgc ttcagtggaa gtccagtacg
     2581 gagtgtcttt caggccggga atcggcggca cggccgggct cgcgccggtg gcgatcaggc
     2641 agcggtcgaa tgccaccacg cgctcgccgc cgtcgttgag ttgcacgatc aggttgcgat
     2701 tgtccttaaa gcgggcggag ccgtgcagca cagtgatcgc cggattgccc tccaagatgc
     2761 cttcgtactt ggcgtggcgc agttcatcga cgcgggcctg ctgctgggcc agcagcgccg
     2821 tgcgctggat ggtcggcgtg gtagcggcga tgccgccatc gaacgggctt tcccggcgca
     2881 gatgggcgat atgggcggcg cggatcatga tcttggacgg cacacaaccg acattgacgc
     2941 aggtgccgcc gatggtgccg cgctcgatca gcgtgacacg tgcgccttgc tcgacggcct
     3001 tcagcgccgc tgccatcgcg gccccgccgc tgccgatgac ggcgatatgc aatgcgccgc
     3061 tgctacccgt cttgtcgttt ctgcccagca gatcgcgcat cttgtcgagc aatccgcccg
     3121 gcgtcgaaac tgagggggca tcggccagcg tggcccgata accgagtcca gctacagcgg
     3181 ccgtcagcgc gtcgggtgac gtgccgacct caatggcgag cttggcgctg cccttggcgt
     3241 aggagacatc cgctgattgc acgccgggca ctttctccag ggcgtccttg acatgcactg
     3301 cgcacgagtc gcaagtcatg ccggtgattt tgagagtgct cataccatcg ttccttattc
     3361 gtgtgggccg ccgtgtcgca cggtcagccg tctttcacaa gcgcttggcg gggagttcgc
     3421 agccgtccgg tccgcaacgg cgatgcgccg gcgacacgaa gtcccagatc gacaccccaa
     3481 tcatcaaggc caggccgacg tacatcaggt tcgccgtcca ccagttgccg agcagccaga
     3541 ccgtggccgc aaacacgatg gccgggccga tcatgccgag cagactgcgc agccattgcc
     3601 gatgactgaa ccaacccagc gcgttcgcca ggaaggccag cgcggcaaac agcggcagca
     3661 ggcggctgat gaacagtccc tcgtactggc tcaagaagcc cagcccgatg gccgcgccga
     3721 agctggcgag ggctggaaag caggcggcgc agcccatcgc ggaaacgacg ctgccgagcg
     3781 cgccggtttt atcggcaatg cgtgtcatca gtcccatgaa gcggctctcg ctgttgtcgt
     3841 tggcttgctg gctcactgct tgacgctgga cggatagccg gcgtctgcgg tggccttggt
     3901 cagcttctgt acgctggcct tggtgtcgtc aaaagtgacg acggcctcgc gcttctcgaa
     3961 gcccacatcg accttgctca cgccttcgac cttggagagc gctttcttga ctgtgatcgg
     4021 gcaggcggcg caagtcatgc cgggaaccgc tagcgtgacg gtctgggtag cggcccacac
     4081 cggggcaaca gcggcggcga gggcaaggga ggcaaacagt ttcttcatga tgaactcctg
     4141 gttaatagaa aaatggaacg acatagggaa atccaagcgc gaccaggacc agcacggcca
     4201 cgatccagaa aatcagcttg taggtggcgc gcacctgcgg aatcgcgcag acctcacctg
     4261 gcttgcatgc ctgcacgggc cggtaaatcc gcttccaggc gaagaacagc gccactagcg
     4321 ccgcgccgat gaacaacggt cgatagggtt ccagcaccgt caggttgccg atccaagcac
     4381 cggagaagcc cagggcgacc agtactagcg gccccaggca gcaggtcgat gcaagaatgg
     4441 cggccagccc gccggcgaag agcgcaccgc gcccgttttg tggttcagac atacgttggc
     4501 ccttttgaat ttggattgga tagcgtaacc ttacttccgt actcatgtac ggagtcaagc
     4561 gatatggaaa ataatttgga aaacctgacc attggcgttt ttgccaaggc ggccggggtc
     4621 aacgtggaga caatccgctt ctatcagcgc aagggcctgt tgcgggaacc ggacaagcct
     4681 tacggcagca tccgccgcta tggggaggcg gacgtggttc gggtgaaatt cgtgaaatcg
     4741 gcacagcggc tggggttcag tctggacgag attgccgagc tgttgcggct cgacgatggc
     4801 acccactgcg aggaggccag cagcctggcc gaacacaagc tcaaggacgt gcgcgagaag
     4861 atggccgact tggcgcgcat ggaaaccgtg ctgtctgaac tcgtgtgcgc ctgccatgca
     4921 cgaaagggga atgtttcctg cccgttgatc gcgtcactac agggcgaagc aggcctggca
     4981 aggtcagcta tgccttagcg tgctttattt tccgttttct gaggtgcccc ctaattgagc
     5041 atttccaggc gcttgcgcct ggtcaacgaa agagtcagcg ccgtaggcgc tgccattttt
     5101 ggggtgaggc cgttcgcggc cgaggggcgc agcccctggg gggatgggag gcccgcgtta
     5161 gcgggccggg agggttcgag aagggggggc accccccttc ggcgtgcgcg gtcacgcgca
     5221 cagggcgcag ccctggttaa aaacaaggtt tataaatatt ggtttaaaag caggttaaaa
     5281 gacaggttag cggtggccga aaaacgggcg gaaacccttg caaatgctgg attttctgcc
     5341 tgtggacagc ccctcaaatg tcaataggtg cgcccctcat ctgtcagcac tctgcccctc
     5401 aagtgtcaag gatcgcgccc ctcatctgtc agtagtcgcg cccctcaagt gtcaataccg
     5461 cagggcactt atccccaggc ttgtccacat catctgtggg aaactcgcgt aaaatcaggc
     5521 gttttcgccg atttgcgagg ctggccagct ccacgtcgcc ggccgaaatc gagcctgccc
     5581 ctcatctgtc aacgccgcgc cgggtgagtc ggcccctcaa gtgtcaacgt ccgcccctca
     5641 tctgtcagtg agggccaagt tttccgcgag gtatccacaa cgccggcggc cgcggtgtct
     5701 cgcacacggc ttcgacggcg tttctggcgc gtttgcaggg ccatagacgg ccgccagccc
     5761 agcggcgagg gcaaccagcc cggtgagcgt cggaaaggcg ctggaagccc cgtagcgacg
     5821 cggagagggg cgagacaagc caagggcgca ggctcgatgc gcagcacgac atagccggtt
     5881 ctcgcaagga cgagaatttc cctgcggtgc ccctcaagtg tcaatgaaag tttccaacgc
     5941 gagccattcg cgagagcctt gagtccacgc tagatctatc tcatctgcgc aaggcagaac
     6001 gtgaagacgg ccgccctgga cctcgcccgc gagcgccagg cgcacgaggc cggcgcgcgg
     6061 acccgcgcca cggcccacga gcggacgccg cagcaggagc gccagaaggc cgccagagag
     6121 gccgagcgcg gccgtgaggc ttggacgcta gggcagggca tgaaaaagcc cgtagcgggc
     6181 tgctacgggc gtctgacgcg gtggaaaggg ggaggggatg ttgtctacat ggctctgctg
     6241 tagtgagtgg gttgcgctcc ggcagcggtc ctgatcaatc gtcacccttt ctcggtcctt
     6301 caacgttcct gacaacgagc ctccttttcg ccaatccatc gacaatcacc gcgagtccct
     6361 gctcgaacgc tgcgtccgga ccggcttcgt cgaaggcgtc tatcgcggcc cgcaacagcg
     6421 gcgagagcgg agcctgttca acggtgccgc cgcgctcgcc ggcatcgctg tcgccggcct
     6481 gctcctcaag cacggcccca acagtgaagt agctgattgt catcagcgca ttgacggcgt
     6541 ccccggccga aaaacccgcc tcgcagagga agcgaagctg cgcgtcggcc gtttccatct
     6601 gcggtgcgcc cggtcgcgtg ccggcatgga tgcgcgcgcc atcgcggtag gcgagcagcg
     6661 cctgcctgaa gctgcgggca ttcccgatca gaaatgagcg ccagtcgtcg tcggctctcg
     6721 gcaccgaatg cgtatgattc tccgccagca tggcttcggc cagtgcgtcg agcagcgccc
     6781 gcttgttcct gaagtgccag taaagcgccg gctgctgaac ccccaaccgt tccgccagtt
     6841 tgcgtgtcgt cagaccgtct acgccgacct cgttcaacag gtccagggcg gcacggatca
     6901 ctgtattcgg ctgcaacttt gtcatgcttg acactttatc actgataaac ataatatgtc
     6961 caccaactta tcagtgataa agaatccgcg cgttcaatcg gaccagcgga ggctggtccg
     7021 gaggccagac gtgaaaccca acagacccct gatcgtaatt ctgagcactg tcgcgctcga
     7081 cgctgtcggc atcggcctga ttatgccggt gctgccgggc ctcctgcgcg atctggttca
     7141 ctcgaacgac gtcaccgccc actatggcat tctgctggcg ctgtatgcgt tgatgcaatt
     7201 tgcctgcgca cctgtgctgg gcgcgctgtc ggatcgtttc gggcggcggc cggtcttgct
     7261 cgtctcgctg gccggcgctg ctgtcgacta cgccatcatg gcgacggcgc ctttcctttg
     7321 ggttctctat atcgggcgga tcgtggccgg catcaccggg gcgactgggg cggtagccgg
     7381 cgcttatatt gccgatatca ctgatggcga tgagcgcgcg cggcacttcg gcttcatgag
     7441 cgcctgtttc gggttcggga tggtcgcggg acctgtgctc ggtgggctga tgggcggttt
     7501 ctccccccac gctccgttct tcgccgcggc agccttgaac ggcctcaatt tcctgacggg
     7561 ctgtttcctt ttgccggagt cgcacaaagg cgaacgccgg ccgttacgcc gggaggctct
     7621 caacccgctc gcttcgttcc ggtgggcccg gggcatgacc gtcgtcgccg ccctgatggc
     7681 ggtcttcttc atcatgcaac ttgtcggaca ggtgccggcc gcgctttggg tcattttcgg
     7741 cgaggatcgc tttcactggg acgcgaccac gatcggcatt tcgcttgccg catttggcat
     7801 tctgcattca ctcgcccagg caatgatcac cggccctgta gccgcccggc tcggcgaaag
     7861 gcgggcactc atgctcggaa tgattgccga cggcacaggc tacatcctgc ttgccttcgc
     7921 gacacgggga tggatggcgt tcccgatcat ggtcctgctt gcttcgggtg gcatcggaat
     7981 gccggcgctg caagcaatgt tgtccaggca ggtggatgag gaacgtcagg ggcagctgca
     8041 aggctcactg gcggcgctca ccagcctgac ctcgatcgtc ggacccctcc tcttcacggc
     8101 gatctatgcg gcttctataa caacgtggaa cgggtgggca tggattgcag gcgctgccct
     8161 ctacttgctc tgcctgccgg cgctgcgtcg cgggctttgg agcggcgcag ggcaacgagc
     8221 cgatcgctga tcgtggaaac gataggccta tgccatgcgg gtcaaggcga cttccggcaa
     8281 gctatacgcg ccctaggagt gcggttggaa cgttggccca gccagatact cccgatcacg
     8341 agcaggacgc cgatgatttg aagcgcactc agcgtctgat ccaagaacaa ccatcctagc
     8401 aacacggcgg tccccgggct gagaaagccc agtaaggaaa caactgtagg ttcgagtcgc
     8461 gagatccccc ggaaccaaag gaagtaggtt aaacccgctc cgatcaggcc gagccacgcc
     8521 aggccgagaa cattggttcc tgtaggcatc gggattggcg gatcaaacac taaagctact
     8581 ggaacgagca gaagtcctcc ggccgccagt tgccaggcgg taaaggtgag cagaggcacg
     8641 ggaggttgcc acttgcgggt cagcacggtt ccgaacgcca tggaaaccgc ccccgccagg
     8701 cccgctgcga cgccgacagg atctagcgct gcgtttggtg tcaacaccaa cagcgccacg
     8761 cccgcagttc cgcaaatagc ccccaggacc gccatcaatc gtatcgggct acctagcaga
     8821 gcggcagaga tgaacacgac catcagcggc tgcacagcgc ctaccgtcgc cgcgaccccg
     8881 cccggcaggc ggtagaccga aataaacaac aagctccaga atagcgaaat attaagtgcg
     8941 ccgaggatga agatgcgcat ccaccagatt cccgttggaa tctgtcggac gatcatcacg
     9001 agcaataaac ccgccggcaa cgcccgcagc atcgcgaccg tcatcggtga gaagttcggc
     9061 aggtattggg tggtgacaat gtaggtgctg ccccaaatgg caggtgctat cgctgtgaac
     9121 aataaatcg
//
LOCUS       DADMJB010000163         9090 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.166, whole genome shotgun sequence.
ACCESSION   DADMJB010000163 DADMJB010000000
VERSION     DADMJB010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9090)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9090)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9090
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.166"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            52..936
                     /locus_tag="JN078_003461"
     CDS             52..936
                     /locus_tag="JN078_003461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707334.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HAY9042536.1"
                     /translation="MIKKIFALPVIEQISPVLSRRKLDELDLIVVDHPQVKASFALQG
                     AHLLSWKPAGEEEVLWLSNNTPFKNGVAIRGGVPVCWPWFGPAAQQGLPAHGFARNLP
                     WTLKSHHEDADGVALTFELTQSEETKKFCPHDFTLLAHFRVGKTCEIDLESHGEFETT
                     SALHTYFNVGDIAKVSVSGLGDRFIDKVNDAKEDVLTDGIQTFPDRTDRVYLNPQDCS
                     VINDEALNRIIAVGHQHHLNVVGWNPGPALSISMGDMPDDGYKTFVCVETAYASETQK
                     VTKEKPAHLAQSIRVAKR"
     gene            complement(987..1841)
                     /gene="yeaE"
                     /locus_tag="JN078_003462"
     CDS             complement(987..1841)
                     /gene="yeaE"
                     /locus_tag="JN078_003462"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal reductase YeaE"
                     /protein_id="HAY9042537.1"
                     /translation="MQQKMIQFSGDVSLPAIGQGTWYMGEDASQRKTEVAALRAGIEL
                     GLTLIDTAEMYADGGAEKVVGEALTGLRDNVFLVSKVYPWNAGRQKAINACEASLRRL
                     NTDYLDLYLLHWSGSFAFEETVAAMEKLIAQGKIRRWGVSNLDYADMQELWQLPGGNQ
                     CATNQVLYHLGSRGIEYDLLPWCQQQQMPVMAYSPLAQAGRLRNGLLKNAVVNEIAHA
                     HNISSAQVLLARVISHQGVMAIPKAATIAHVQQNAAVLEVELSSAELTMLDKAYPAPK
                     GKTALDMV"
     gene            complement(1931..2677)
                     /locus_tag="JN078_003463"
     CDS             complement(1931..2677)
                     /locus_tag="JN078_003463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MltA-interacting protein"
                     /protein_id="HAY9042538.1"
                     /translation="MTKLKLLALGVLIATSAGVAHAEGKFSLGAGVGVVEHPYKDYDT
                     DVYPVPVINYEGDNFWFRGLGGGYYLWNDATDKLSITAYWSPLYFKAKDSGDHQMRHL
                     DDRKSTMMAGLSYAHFTQYGYLRTTLAGDTLDNSNGIVWDMAWLYRYTNGGLTVTPGI
                     GVQWNSENQNEYYYGVSRKESARSGLRGYNPNDSWSPYLELSASYNFLGDWSVYGTAR
                     YTRLSDEVTDSPMVDKSWTGLISTGITYKF"
     gene            3113..5047
                     /gene="yeaG"
                     /locus_tag="JN078_003464"
     CDS             3113..5047
                     /gene="yeaG"
                     /locus_tag="JN078_003464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase YeaG"
                     /protein_id="HAY9042539.1"
                     /translation="MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLM
                     AIGEPVMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEK
                     KQILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQI
                     LEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDEN
                     NQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLL
                     TATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLR
                     ISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGES
                     LKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVL
                     EQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVT
                     YADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARAN
                     NSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVISFNAKTSTDEQKKHDDFVDRMMEKG
                     YTRKQVRLLCEWYLRVRKSS"
     gene            5160..6443
                     /locus_tag="JN078_003465"
     CDS             5160..6443
                     /locus_tag="JN078_003465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeaH/YhbH family protein"
                     /protein_id="HAY9042540.1"
                     /translation="MTWFIDRRLNGKNKSMVNRQRFLRRYKAQIKQSISEAMNKRSVT
                     DVDSGESISIPTEDISEPMFHQGRGGLRHRVHPGNDHFVQNDRIERPQGGGGGSGSGQ
                     GQASQDGEGQDEFVFQISKDEYLDLLFEDLALPNLKQNQQRQLTEYKTHRAGYTANGV
                     PANISVVRSLQNSLARRTAMTAGKRRELHALEENLAIISNSEPAQLLEEERLRKEIAE
                     LRAKIERVPFIDTFDLRYKNYEKRPDPSSQAVMFCLMDVSGSMDQSTKDMAKRFYILL
                     YLFLSRTYKNVEVVYIRHHTQAKEVDEHEFFYSQETGGTIVSSALKLMDEVVKERYNP
                     AQWNIYAAQASDGDNWADDSPLCHEILAKKLLPVVRYYSYIEITRRAHQTLWREYEHL
                     QSTFDNFAMQHIRDQDDIYPVFRELFHKQNATAKD"
     gene            6590..8066
                     /locus_tag="JN078_003466"
                     /pseudo
     CDS             6590..8066
                     /locus_tag="JN078_003466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416299.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
     gene            8160..8246
                     /locus_tag="JN078_003467"
                     /pseudo
     CDS             8160..8246
                     /locus_tag="JN078_003467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001459804.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
     gene            8247..>9090
                     /locus_tag="JN078_003468"
     CDS             8247..>9090
                     /locus_tag="JN078_003468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416300.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HAY9042541.1"
                     /translation="MKLHHRMLRHFIAASVIVLTSSFLIFELVASDRAMSAYLRYIVQ
                     KADSSFLYDKYQNQSIAAHVMRALAAEQSEVSPEQRRAICEAFESANNTHGLNLTAHK
                     YPGLRGTLQTASTDCDTIVEAAALLPAFDQAVEGNRHQDDYGSGLGMAEEKFHYYLDL
                     NDRYVYFYEPVNVEYFAMNNWSFLQSGSIGIDRKDIEKVFTGRTVLSSIYQDQRTKQN
                     VMSLLTPVYVAGQLKGIVLLDINKNNLRNIFYTHDRPLLWRFLNVTLTDTDSGREVAK
                     FSVPL"
BASE COUNT         2393 a         2181 c         2107 g         2409 t
ORIGIN      
        1 cttcggtcgc tctttttttt acctgataaa atgaagttaa aggactgcgt catgattaag
       61 aaaatttttg cccttccggt catcgaacaa atctcccctg tcctctcccg tcgtaaactg
      121 gatgaactgg acctcattgt ggtcgatcat ccccaggtaa aagcctcttt tgcattacag
      181 ggcgcacacc ttctctcgtg gaaacctgcg ggtgaagaag aagttctgtg gttgagcaac
      241 aacacaccgt tcaaaaatgg cgtcgctatt cgcggtggcg taccggtttg ctggccgtgg
      301 tttggtccgg cggcacaaca aggtctgcct gcgcacggtt ttgcccgcaa cctgccgtgg
      361 acgctgaaat cacatcatga agatgctgat ggcgtagcgc tgacttttga attgacgcaa
      421 agcgaagaga cgaaaaaatt ctgtccgcac gactttacgc tgttagcgca tttccgcgtg
      481 ggtaaaacct gtgaaatcga tcttgaatca catggcgaat ttgaaaccac ctctgccctg
      541 catacctact ttaacgtggg tgatatcgct aaggtaagcg tcagtgggct gggcgatcgc
      601 ttcattgata aagtgaatga cgcgaaagaa gatgtactga ccgacggtat tcagaccttc
      661 cctgaccgta ccgatcgcgt gtatctgaat ccgcaagatt gcagcgtgat taatgatgaa
      721 gcgctgaatc gtattatcgc cgtaggccac cagcatcatc tgaacgttgt aggctggaac
      781 ccgggaccgg cgctttcaat tagcatgggc gatatgccgg atgatggcta caaaacattt
      841 gtttgtgtag aaacggctta cgcttcagaa acgcaaaaag tcaccaaaga gaaacctgca
      901 catctggcgc aatccattcg cgttgcgaaa cgttaatttg cgttaatgtt gtgtgccggg
      961 tgcgatgcat ccggcacgta tcaacatcac accatatcca gcgcagtttt tccttttggt
     1021 gccggatacg ctttatccag catggttaat tccgctgacg aaagttcgac ctcaagcaca
     1081 gccgcattct gttgaacatg ggcaatcgtg gccgcttttg gaatcgccat cacaccctga
     1141 tggctgatta ccctcgccaa caatacttgt gccgagctga tattgtgagc atgtgcaatt
     1201 tcgttgacta ccgcgttttt taacagtcca ttgcgcaacc gcccggcctg ggctaatgga
     1261 ctgtaagcca tcaccggcat ctgctgttgc tggcaccagg ggagtagatc gtactcaatc
     1321 cctcgtgaac cgagatggta aagcacctga ttagtggcac actgatttcc ccccggcagc
     1381 tgccagagtt cctgcatatc agcataatca aggttagaaa cgccccagcg gcggattttt
     1441 ccctgggcga tcaatttttc catcgctgca acagtctctt caaaagcgaa actgccagac
     1501 cagtgtaata agtagagatc gagataatca gtattgagac ggcgtaaact ggcttcgcat
     1561 gcatttatcg ctttttgcct gccagcattc cacggataga ctttagagac gagaaagacg
     1621 ttatcacgca gaccggttaa tgcttcccca accacctttt cggcaccgcc atcggcatac
     1681 atttcggcgg tatcaatgag ggttaaaccg agctcaatgc ccgcgcgtag tgcagcaact
     1741 tctgttttgc gctgactggc atcttcgccc atataccatg ttccctgccc tatggctggc
     1801 agtgagacat cgccactaaa ttgaatcatt ttttgttgca ttgtttcctc ccaggtattg
     1861 caccaccgta atgcaaaaca gggcgtgacg ccctgttttt atgcacaaaa tgccctggaa
     1921 agatgcatta tcagaatttg taggtgatcc cggtagaaat caggccagtc caggatttat
     1981 ccaccatcgg gctgtcagta acttcatcag acagacgggt atagcgcgcg gtaccgtaaa
     2041 cactccagtc gccgaggaag ttgtagctgg cgctcagctc caggtaaggg ctccagctgt
     2101 cgttcgggtt atagccacgc agaccgctgc gagcggactc tttgcgcgat acgccataat
     2161 agtattcgtt ctggttttcg ctgttccact gcacaccaat acccggagtc acggtcaggc
     2221 caccgttggt gtaacgatac aaccaggcca tatcccagac aatgccgttg ctgttatcca
     2281 gggtatcgcc agccagggtg gtacgcaggt aaccgtactg ggtaaagtga gcataagaca
     2341 gaccagccat catggtgctc ttacggtcat ccaggtgacg catttggtga tcgccactgt
     2401 ctttcgcttt gaagtaaagc ggcgaccagt aagcggtaat tgaaagttta tccgttgcgt
     2461 cattccacag gtagtaacca ccacctaagc cacggaacca gaagttatcg ccttcatagt
     2521 tgattaccgg tactgggtaa acatcggtat cgtaatcttt atatgggtgc tcaacgacac
     2581 ctacgcctgc gcccaaggaa aatttacctt cagcgtgcgc tacgcctgca gacgttgcga
     2641 taagcactcc aagtgccaga agtttgagtt tggtcacaat taatcattcc ttaaacaaat
     2701 gtttagcggg cgacaaagtt tacccgtcaa tacatcgaaa cccaaccttt ttacgttttc
     2761 attttttaaa gtaactgttt aattttcctg ccgcggatga caccgcgctt acagccaaat
     2821 gaatttagcg ttactggcga gcctggtctt tacattaatt atgcaaaatt tatggatgag
     2881 ttgttgatat gccattgaaa ttaagaaagc cgtgcaggca agttttccat ttgccatcta
     2941 cgcttaattt tgaaggtgta tcaccgggca cgttgttctc atcgtcgata aaatggcatg
     3001 agagttgctg tgttttagca agagacgtcg ttcagtttac ctcttccggg aggctctact
     3061 attcatatga acggctctta acctgtgcta aaaaacgaaa ggacggcata ccatgaatat
     3121 attcgatcac tatcgccagc gatatgaagc tgccaaggac gaagagttca cactgcagga
     3181 gtttcttacc acttgtcggc aagatcgcag tgcttatgcc aacgcggctg agcggctatt
     3241 gatggctatc ggtgagcctg tcatggtcga tacagcccag gaacccagac tttctcgact
     3301 cttttctaac cgggtcattg cacgttatcc ggcgtttgaa gagttttacg gcatggaaga
     3361 cgcgattgaa cagattgtct cttatctgaa acacgcggct caggggctgg aagagaagaa
     3421 acaaatcctg tatctgctgg ggcctgtggg tgggggtaaa tcatcgcttg ctgagcgact
     3481 gaaatcatta atgcagctcg taccgattta tgtattgagc gccaacggtg agcgtagccc
     3541 ggtcaacgat catccgttct gtcttttcaa tccgcaggaa gatgcgcaga ttctggaaaa
     3601 agagtatggc attcctcgcc gttatctcgg caccatcatg tcgccgtggg cggcaaaacg
     3661 cctgcatgaa tttggtggcg atatcactaa gttccgggta gtgaaggtct ggccgtcaat
     3721 tctgcaacaa attgctatcg ccaaaacgga acccggcgat gagaacaacc aggacatctc
     3781 cgcgctggtt gggaaagtcg atattcgtaa actcgaacac tacgcgcaga atgacccgga
     3841 cgcctacggc tattccggtg cgctgtgccg cgccaatcag gggatcatgg aattcgttga
     3901 gatgtttaaa gcaccgataa aagtgctgca tcccttgtta accgccactc aggaaggtaa
     3961 ctacaacggg acggaaggta tctccgccct gccgttcaac gggattattc tcgcccactc
     4021 gaacgagtcc gaatgggtca ctttccgtaa taacaaaaac aacgaagcct tcctcgaccg
     4081 tgtttacatc gtgaaggtgc cgtattgctt gcgcatttcc gaagagatca aaatctacga
     4141 gaaattgctt aatcacagtg aattgactca cgccccatgc gcccctggca cgctggaaac
     4201 actgtcacgt ttttccattc tttcgcgcct gaaagagcca gaaaactcca gcatttattc
     4261 aaagatgcgg gtttatgatg gcgaaagtct gaaagacacc gatcccaaag ccaagtcgta
     4321 tcaggaatat cgtgactacg ccggtgtcga tgaagggatg aacggtctgt cgacgcgttt
     4381 tgcgtttaag atcctctccc gcgtgttcaa cttcgatcat gtagaagtgg cggcaaaccc
     4441 ggtccatctg ttctacgtcc tggaacagca gatcgagcgc gagcagttcc cgcaagagca
     4501 ggcagaacgc tatctggagt tcctgaaagg ttatctgatc ccgaaatatg ccgagtttat
     4561 cggcaaagag atccagacgg cctaccttga atcctattcc gaatatgggc aaaacatttt
     4621 cgaccgttat gttacctacg cggatttctg gattcaggat caggagtatc gcgatccgga
     4681 taccgggcag ctgtttgacc gcgagtctct taacgccgag ctggagaaaa tcgagaaacc
     4741 ggcggggatc agtaatccaa aagatttccg caacgagatt gttaacttcg tactgcgcgc
     4801 cagagcgaat aacagcggac gcaatccgaa ctggaccagc tatgaaaaac tgcgcacggt
     4861 tatcgagaag aaaatgttct ccaataccga ggagctgttg ccggttatct cgtttaacgc
     4921 caaaacgtca accgacgagc agaagaaaca cgacgacttt gtcgaccgta tgatggaaaa
     4981 aggctacacc cgtaaacagg tgcgtttact gtgcgaatgg tatttgcgcg tacgtaaatc
     5041 gtcttaacaa ccctggcccg gtacacatgc taccgggcct acaacgacag cgaaccgtgg
     5101 gccagagaaa tggcaacaca ggcgtagcat acagttggca aatgtagtac ggggggcata
     5161 tgacctggtt tattgaccgg cgtctgaacg gcaaaaacaa aagcatggtg aatcgccagc
     5221 gttttttacg ccgttataaa gcgcaaatta aacagtcgat ctccgaggcc atgaataagc
     5281 gttcggtgac tgacgtcgac agcggcgaat ccatatccat tcccacggaa gatattagcg
     5341 aaccgatgtt tcatcagggg cgtggcggcc tgcgccaccg cgtacatccg ggcaatgacc
     5401 atttcgtcca gaacgaccga attgaacgtc cccagggtgg cggcggaggt tccggcagtg
     5461 gtcagggcca ggccagccag gatggtgaag gtcaggatga atttgtcttt cagatttcga
     5521 aagatgagta tcttgatctg ctctttgaag atttggcctt accgaatctg aaacaaaacc
     5581 aacaacgcca gctgaccgaa tataaaacgc atcgggcggg ttataccgct aacggcgttc
     5641 cagccaatat cagcgttgtg cgttccttgc agaactcact ggcgcgacgc acagccatga
     5701 cggcgggcaa gcgacgggaa cttcatgcgc tggaagagaa tttggccatc atcagcaaca
     5761 gtgaacctgc gcaactgctg gaagaggaac gtctgcgcaa agaaattgca gaattacgtg
     5821 ccaaaattga acgcgtccct tttattgaca ccttcgattt acgttacaag aactacgaga
     5881 agcggcccga tccctccagc caagcagtga tgttttgcct gatggacgtt tccggttcaa
     5941 tggatcaatc cactaaagat atggctaagc gtttttatat tctgctgtat ctgttcctca
     6001 gcagaacgta taagaacgtg gaagtcgtat acatccgcca tcatacccaa gcgaaagaag
     6061 tcgatgaaca tgagtttttc tactcgcagg aaacaggcgg caccattgtt tccagcgccc
     6121 tgaaactgat ggatgaggta gtgaaagagc gttataaccc ggcacagtgg aatatttacg
     6181 ctgcacaagc atcggacggc gataactggg ccgatgactc tccgctttgc catgaaatcc
     6241 tagcgaaaaa attattacct gttgttcgtt attacagcta tatcgaaatt acccgtcgtg
     6301 cacatcagac attgtggcga gaatatgagc atctgcaatc tactttcgac aactttgcga
     6361 tgcagcacat ccgcgaccag gatgatattt atccggtgtt ccgtgaactg tttcataaac
     6421 aaaatgcaac agctaaagac taaaactatc agccaggtca ttatcgcctg gctgattttt
     6481 agcttactgt aaattatctc atttattaca tacattagct tacaatcgct ttaaatatga
     6541 cagcataacc tttacataat ttagttccag aaaacaatca ttcggaaaaa tgattcagtc
     6601 aacacgtatt tccatggggt tattctttaa atatttttta tcgttaacga aaattgatcc
     6661 tggtcaaaac tatatatctc tgccatcaat aaaatccagc actcacattg ctctcctttt
     6721 tatggtttct atgggtacac aaaaattaaa agctcaaagc ttttttattt tcagtttatt
     6781 gctgacatta attttatttt gcattactac cttatataac gaaaacacaa atgtaaaact
     6841 catcccacag atgaattacc tgatggttgt tgtggctttg tttttcctta acgccgtcat
     6901 ttttcttttc atgttaatga aatatttcac taacaaacaa attttaccaa cactcatttt
     6961 aagccttgca ttcttaagtg gccttatcta tttagttgaa accattgtaa ttatccataa
     7021 accaattaac ggcagtacac tgatccagac aaagtcgaat gatgtttcta ttttctatat
     7081 tttccgccaa ctcagtttta tttgtttaac ctcgctggca ctcttttgtt atggaaaaga
     7141 caacatcctt gacaacaata agaaaaaaac gggaatcctg ttgctggcgt tgattccttt
     7201 tttagttttt ccccttctgg cacacaatct gagcagttat aactgctgac tattctttgt
     7261 atgtcgtcga ctactgtccg gacaaccata ctgcgaccag gggaatcaac tatacaaaaa
     7321 tattggtttg tctgtgggca tttttactgt tctttattat catgcgtaca cgattagcca
     7381 gcgaactatg gccgttaata gcattattat gtctggcatc gctatgctgc aacttacttc
     7441 tactgactct ggatgagtat aattacacca tctggtatat cagtcgcggg attgaagttt
     7501 ccagtaaact gtttgttgtg tcttttctga tttataacat ttttcaggag ctgcaactct
     7561 ccagcaaact ggcagttcat gatgtgctga ccaatattta taatcggcgc tactttttca
     7621 acagcgtaga gtcattattg tcgcgacctg ttgttaagga cttctgtgtc atgctggttg
     7681 atattaatca gttcaaacgc atcaatgccc aatggggaca tcgtgtgggt gataaagtgc
     7741 tggtttcaat tgtcgatatt atccagcaaa gcatccgccc tgatgatatt ttagcgcgac
     7801 tggagggtga ggtgtttggc ttgctattta ccgaactcaa tagtgcccag gcaaaaatca
     7861 ttgcggatcg tatacgtaaa aatgtcgaac tcctgaccgg ctttagtaac agatatgatg
     7921 ttcctgaaca aatgaccatc agtattggca cggttttttc aacgggtgac acgcgtaata
     7981 tctcgcttgt catgacggaa gcagataaag ccttacgcga agcgaaaagc gaggggggca
     8041 acaaagtgat tattcatcat atttaagtgc aaaaatattc agagccatgc tttttgcgtg
     8101 gcttttgcat acaatttatt actattaccc ctaaatttcc cctccccagc ggcgcagaga
     8161 tgagtataat tagcgcccct gtgccaggcc gcaatcgaac tttatctggt tttctcgttt
     8221 cactaactga aggagtgcca tttatcatga aattgcacca tagaatgctc cggcatttta
     8281 tcgccgcaag tgtcattgtg ctgacatctt ccttccttat ttttgaactt gtcgccagcg
     8341 acagagcaat gagtgcctat ctgcgctata tcgtgcagaa agcagactcc tcctttcttt
     8401 atgataagta tcagaatcag agtattgccg cgcatgtgat gcgcgctctc gctgctgagc
     8461 agtcggaagt gtcgccagaa cagcggcgcg ccatctgcga ggcttttgag tctgccaata
     8521 atacccatgg cttaaacctg actgctcata aatacccggg cttacgcggc acactacaaa
     8581 ccgcatccac tgactgcgac acaattgtgg aagctgcagc actattaccc gcttttgatc
     8641 aggcagtgga aggcaaccgc caccaggatg attacggttc aggtcttggg atggccgaag
     8701 agaaatttca ctattatctc gatctcaatg accgctatgt ctatttttat gagccggtta
     8761 atgttgaata ctttgcgatg aataactggt ccttcctgca gtcaggaagt attggtatcg
     8821 atcgcaaaga tattgaaaag gtatttaccg ggcgtaccgt attgtcgagc atttaccagg
     8881 atcagcgtac taaacagaac gtgatgagtt tgctgacgcc ggtgtatgtt gcagggcagc
     8941 taaaagggat tgtgctgctg gatattaaca aaaacaattt gcggaatatc ttttacactc
     9001 atgaccgccc tctcctctgg cgttttctca atgtcacgct aaccgatacc gattcggggc
     9061 gtgaagtggc caaattcagt gtgccacttc
//
LOCUS       DADMJB010000164         9067 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.167, whole genome shotgun sequence.
ACCESSION   DADMJB010000164 DADMJB010000000
VERSION     DADMJB010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9067)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9067)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9067
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.167"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            247..768
                     /locus_tag="JN078_003469"
     CDS             247..768
                     /locus_tag="JN078_003469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HAY9042542.1"
                     /translation="MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQD
                     TFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPE
                     ERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA
                     VEHCLLFRLEYGL"
     gene            765..1718
                     /gene="fecR"
                     /locus_tag="JN078_003470"
     CDS             765..1718
                     /gene="fecR"
                     /locus_tag="JN078_003470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fec operon regulator FecR"
                     /protein_id="HAY9042543.1"
                     /translation="MNPLLTDSRRQALRSASHWYAVLSGERVSPQQEARWQQWYEQDQ
                     DNQWAWQQVENLRNQLGGVPGDVASRALHDTRLTRRHVMKGLLLLLGAGGGWQLWQSE
                     TGEGLRADYRTAKGTVSRQQLEDGSLLTLNTQSAADVRFDAHQRTVRLWYGEIAITTA
                     KDALQRPFRVLTRQGQLTALGTEFTVRQQDNFTQLDVQQHAVEVLLASAPAQKRIVNA
                     GESLQFSASEFGAVKPLDDESTSWTKDILSFSDKPLGEVIATLTRYRNGVLRCDPAVA
                     GLRLSGTFPLKNTDAILNVIAQTLPVKIQSITRYWINISPL"
     gene            1805..4129
                     /gene="fecA"
                     /locus_tag="JN078_003471"
     CDS             1805..4129
                     /gene="fecA"
                     /locus_tag="JN078_003471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) dicitrate transport protein FecA"
                     /protein_id="HAY9042544.1"
                     /translation="MTPLRVFRKTTPLVNTIRLSLLPLAGLSFSAFAAQVNIAPGSLD
                     KALNQYAAHSGFTLSVDASLTRGKQSNGLHGDYDVESGLQQLLDGSGLQVKPLGNNSW
                     TLEPAPAPKEDALTVVGDWLGDARENDVFEHAGARDVIRREDFAKTGATTMREVLNRI
                     PGVSAPENNGTGSHDLAMNFGIRGLSPRLASRSTVLMDGIPVPFAPYGQPQLSLAPVS
                     LGNMDAIDVVRGGGAVRYGPQSVGGVVNFVTRAIPQDFGIEAGVEGQLSPTSSQNNPK
                     ETHNLMVGGTADNGFGTALLYSGTRGSDWREHSATRIDDLMLKSKYAPDEVHTFNSLL
                     QYYDGEADMPGGLSRADYDADRWQSTRPYDRFWGRRKLASLGYQFQPDSQHKFNIQGF
                     YTQTLRSGYLEQGKRITLSPRNYWVRGIEPRYSQIFMIGPSAHEVGVGYRYLNESTHE
                     MRYYTATSSGQLPSGSSPYDRDTRSGTEAHAWYLDDKIDIGNWTITPGMRFEHIESYQ
                     NNAITGTHEEVSYNAPLPALNVLYHLTDSWNLYANTEGSFGTVQYSQIGKAVQSGNVE
                     PEKARTWELGTRYDDGALTAEIGLFLINFNNQYDSNQTNDTVTARGKTRHTGLETQAR
                     YDLGTLTPTLDNVSIYASYAYVNAEIREKGDTYGNLVPFSPKHKGTLGVDYKPGNWTF
                     NLNSDFQSSQFADNANTVKESADGSTGRIPGFMLWGARVAYDFGPQMADLNLAFGVKN
                     IFDQDYFIRSYDDNNKGIYAGQPRTLYMQGSLKF"
     gene            4174..5076
                     /gene="fecB"
                     /locus_tag="JN078_003472"
     CDS             4174..5076
                     /gene="fecB"
                     /locus_tag="JN078_003472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) dicitrate ABC transporter
                     substrate-binding protein FecB"
                     /protein_id="HAY9042545.1"
                     /translation="MLAFIRFLFAGLLLVISHAFAAMVQDEHGTFTLEKTPQRIVVLE
                     LSFADALAAVDVSPIGIADDNDAKRILPEVRAHLKPWQSVGTRAQPSLEAIAALKPDL
                     IIADSSRHAGVYIALQQIAPVLLLKSRNETYAENLQSAAIIGEMVGKKREMQARLEQH
                     KERMAQWASQLPKGTRVAFGTSREQQFNLHTQETWTGSVLASLGLNVPAAMVGASMPS
                     IGLEQLLAVNPAWLLVAHYREESIVKRWQQDPLWQMLTAAQKQQVASVDSNTWARMRG
                     IFAAERIAADTVKIFHHQPLTVVK"
     gene            5073..6071
                     /gene="fecC"
                     /locus_tag="JN078_003473"
     CDS             5073..6071
                     /gene="fecC"
                     /locus_tag="JN078_003473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-dicitrate ABC transporter permease FecC"
                     /protein_id="HAY9042546.1"
                     /translation="MTAIKHPVLLWGLPIAALIIIFWLSLFCYSAIPVSGADATRALL
                     PGHTPTLPEALVQNLRLPRSLVAVLIGASLALAGTLLQTLTHNPMASPSLLGINSGAA
                     LAMALTSALSPTPIAGYSLSFIAACGGGVSWLLVMTAGGGFRHTHDRNKLILAGIALS
                     AFCMGLTRITLLLAEDHAYGIFYWLAGGVSHARWQDVWQLLPVVVTAVPVVLLLANQL
                     NLLNLSDSTAHTLGVNLTRLRLVINMLVLLLVGACVSVAGPVAFIGLLVPHLARFWAG
                     FDQRNVLPVSMLLGATLMLLADVLARALAFPGDLPAGAVLALIGSPCFVWLVRRRG"
     gene            6068..7024
                     /gene="fecD"
                     /locus_tag="JN078_003474"
     CDS             6068..7024
                     /gene="fecD"
                     /locus_tag="JN078_003474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) dicitrate ABC transporter permease
                     subunit FecD"
                     /protein_id="HAY9042547.1"
                     /translation="MKIALVIFITLALAGCALLSLHMGVIPVPWRALLTDWQAGREHY
                     YVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPLASPDILGVNHAASLASVGALLL
                     MPSLPVMVLPLLAFAGGMAGLILLKMLAKTHQPMKLALTGVALSACWASLTDYLMLSR
                     PQDVNNALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLG
                     VSVPHTRFWALLLAVAMTSTGVAACGPISFIGLVVPHMMRSITGGRHRRLLPVSALTG
                     ALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLVRMR"
     gene            7025..7792
                     /gene="fecE"
                     /locus_tag="JN078_003475"
     CDS             7025..7792
                     /gene="fecE"
                     /locus_tag="JN078_003475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) dicitrate ABC transporter ATP-binding
                     protein FecE"
                     /protein_id="HAY9042548.1"
                     /translation="MTLRTENLTVSYGTDKVLNDVSLSLPTGKITALIGPNGCGKSTL
                     LNCFSRLLMPQSGTVFLGDNPINMLSSRQLARRLSLLPQHHLTPEGITVQELVSYGRN
                     PWLSLWGRLSAEDNARVNVAMNQTRINHLAVRRLTELSGGQRQRAFLAMVLAQNTPVV
                     LLDEPTTYLDINHQVDLMRLMGELRTQGKTVVAVLHDLNQASRYCDQLVVMANGHVMA
                     QGTPEEVMTPGLLRTVFSVEAEIHPEPVSGRPMCLMR"
     gene            complement(8351..8608)
                     /locus_tag="JN078_003476"
     CDS             complement(8351..8608)
                     /locus_tag="JN078_003476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000177060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042549.1"
                     /translation="MTLVNDTGFDPVFSGSIAESWRQQPCTPSYCCDWEAATMLRAFP
                     LAKKGEGRARLPSLYASFGKLGETPTHEDIIDNNRSINWPV"
     gene            complement(8691..9067)
                     /locus_tag="JN078_003477"
                     /pseudo
     CDS             complement(8691..9067)
                     /locus_tag="JN078_003477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611482.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
BASE COUNT         1968 a         2591 c         2501 g         2007 t
ORIGIN      
        1 cagcattacc gaaatcccca tcctttaggg cagtgaggat gtcaataata gcagaccaca
       61 tcatgagtca ttctgaccga cacatgccag aagcagatgc tccatcccat tttataccta
      121 ccttataaca cttagaaaaa caacatgtta aaaatgtcta ttggaaacaa ttttatttcc
      181 aattgtaatg ataaccattc tcatattaat atggctacgt gataattaac ttttgatgca
      241 ctccgcatgt ctgaccgcgc cactaccaca gcttccttaa cgttcgagtc gctttatggc
      301 acacatcacg gctggttgaa aagctggctg acgcgcaaac tccagtctgc ttttgatgca
      361 gatgacattg cccaggacac ttttttgcgg gtaatggtca gcgaaacgct ctcgacgatc
      421 cgcgatcctc gctccttcct gtgcactatc gccaaacgcg tgatggtgga cctgtttcgc
      481 cgaaacgcgc tggaaaaagc gtatctggag atgctggcgc ttatgccgga ggggggagcg
      541 ccttcacctg aggaacgcga aagccaactc gagaccctac aactcctcga cagcatgctg
      601 gacgggctaa acggcaaaac acgtgaagcg tttctgcttt cgcaactgga tggtctgaca
      661 tacagcgaga ttgcgcacaa actcggtgtt tccatcagct ccgtgaaaaa atacgtggcg
      721 aaagccgtcg agcactgcct gctgttccgt ctggagtatg ggttatgaat cctttgttaa
      781 ccgattcccg ccgtcaggcg ctgcgttcag cttcccactg gtatgccgtt ctaagcggcg
      841 agcgcgtcag cccacaacag gaagcgcgct ggcaacagtg gtatgaacag gatcaggata
      901 accagtgggc ctggcagcag gttgaaaacc tgcgcaacca gcttggcggt gtgcctggcg
      961 acgttgccag ccgggcgttg cacgataccc gcctcacccg ccgtcacgtg atgaaaggat
     1021 tactgctgtt gctcggcgct ggcggaggct ggcagctctg gcagtcggaa accggcgaag
     1081 gtctgcgggc agattaccgc accgccaaag gcacagtcag ccgtcagcaa ctggaagatg
     1141 gctccctgct cacgctgaat acccaaagcg cggcggatgt gcgttttgat gcgcatcaac
     1201 gcaccgtccg gctctggtac ggtgaaatcg ccattactac cgcgaaagat gccctgcaac
     1261 gccccttccg tgtcctgacc cgtcagggcc agctcactgc tttagggaca gaatttaccg
     1321 tccgccagca ggataatttc acgcagcttg acgtgcagca gcacgctgtg gaagtgcttc
     1381 tcgccagtgc ccccgcgcaa aaacgcatcg tgaacgctgg tgaaagcctg cagttcagcg
     1441 cctctgagtt tggcgcagtg aaaccgctgg atgacgagag tacaagctgg acgaaggaca
     1501 tcctgagctt cagcgataaa ccgctgggtg aggtgatagc cacgctaacc cgttaccgca
     1561 acggcgtgct gcgctgcgat cccgccgttg ccgggctgcg cctgagcggg acgttcccgc
     1621 tgaaaaatac cgatgcgatc ctgaacgtta tcgcgcaaac gcttcccgtt aaaattcagt
     1681 ctattacgcg gtactggata aacatttcac cactgtaagg aaaataattc ttatttcgat
     1741 tgtccttttt acccttctcg ttcgactcat agctgaacac aacaaaaatg atgatgggga
     1801 aggtatgacg ccgttacgcg tttttcgtaa aacaacacct ttggttaaca ccattcgcct
     1861 gagcctgctg ccgctggccg gtctctcgtt ttccgctttt gctgcacagg ttaatatcgc
     1921 accgggatcg ctcgataaag cgctcaatca gtatgccgca cacagcggat ttaccctctc
     1981 ggttgacgcc agcctgacgc gcggcaagca gagcaacggc ctgcacggcg attacgacgt
     2041 cgagagcggc ctgcaacaac tgctggacgg cagcggactg caggtaaaac cgctgggaaa
     2101 taacagctgg acgctggagc ccgcgcccgc accaaaagaa gatgccctga ccgtggtcgg
     2161 cgactggctg ggtgatgcgc gtgaaaacga cgtatttgaa catgctggcg cgcgtgacgt
     2221 gatccgccgt gaggatttcg ccaaaaccgg cgcaaccacc atgcgtgagg tacttaaccg
     2281 catccctggc gtcagcgcgc cggaaaacaa cggcaccggc agccacgacc tggcgatgaa
     2341 ctttggcatc cggggcctga gcccgcgcct cgccagccgc tcgaccgtcc tgatggacgg
     2401 catccccgtc cccttcgccc cttacggtca gccgcagctt tcactggctc ccgtttcgct
     2461 cggcaacatg gatgccattg acgtggtacg cggtggtggt gcggtgcgtt acggaccgca
     2521 gagcgtgggc ggcgtggtga actttgttac ccgtgccatt ccgcaggact ttggtatcga
     2581 ggcgggcgtg gaaggtcagc tcagcccaac ctcttcacaa aacaacccga aagagacgca
     2641 caacctgatg gtgggcggca cagcggacaa cggttttggc accgcgctgc tctactccgg
     2701 cacgcgcggc agtgactggc gcgagcacag cgccacccgc atcgacgacc tgatgctgaa
     2761 aagcaaatat gcgccggatg aggtgcacac cttcaacagc ctgctgcaat attacgacgg
     2821 tgaagccgac atgcccggtg gcctgtctcg cgcggattac gacgccgatc gctggcaatc
     2881 cacccgcccg tatgaccgct tctggggtcg tcgcaagctg gcgagcctgg gctaccagtt
     2941 ccagccagac agccagcata aattcaacat tcaggggttc tacacccaaa ccctgcgcag
     3001 cggctacctg gagcaaggca aacgcatcac cctctcgccg cgtaactact gggtgcgcgg
     3061 tattgagcca cgctacagcc agatctttat gatcggccct tccgcgcacg aagtgggcgt
     3121 gggctatcgc tatttgaatg aatcaacgca tgaaatgcgt tactacaccg ccaccagcag
     3181 cgggcagttg ccgtccggct caagccctta cgaccgcgat acgcgttccg gcaccgaggc
     3241 gcacgcctgg tatctggatg acaaaatcga catcggcaac tggaccatca cgccgggtat
     3301 gcgtttcgaa catatcgagt cataccagaa caacgccatc acaggcacgc acgaagaagt
     3361 gagctataac gcaccgcttc cggcgttgaa cgtgctctat cacctgactg acagctggaa
     3421 tctttatgca aacactgaag gctcgttcgg caccgtacag tacagccaga ttggcaaggc
     3481 tgtgcaaagc ggcaatgtgg aaccggaaaa agcgcgaacc tgggaactcg gtacccgcta
     3541 cgacgacggc gcgctgacgg cggaaatagg gctgttcctg attaacttta acaatcagta
     3601 cgactccaac cagaccaacg acaccgtcac tgcacgtggc aaaacgcgcc ataccgggct
     3661 ggaaacgcag gcacgttacg atctgggtac gctaacgcca acgcttgata acgtttccat
     3721 ctacgccagc tatgcgtatg tgaacgcgga aatccgcgag aaaggcgaca cctacggcaa
     3781 tctggtacca ttctccccga aacataaagg cacgctgggc gtggactaca agccaggaaa
     3841 ctggacgttc aatctgaaca gcgatttcca gtccagccag tttgcggata acgccaatac
     3901 ggtgaaagag agcgccgacg gcagtaccgg ccgcattccc ggcttcatgc tctggggcgc
     3961 acgcgtggcg tatgactttg gcccgcagat ggcagatctg aacctggcat tcggtgtgaa
     4021 aaacatcttc gaccaggact acttcatccg ctcttatgac gacaacaaca aaggcatcta
     4081 tgcaggccag ccgcgcacgc tgtatatgca ggggtcgttg aagttctgat gtgttaacgc
     4141 ccggcttgcc gggcttttag ctggaatgtg attatgttgg catttatccg ttttcttttt
     4201 gcaggcctgc tgctggtgat cagccacgcc tttgccgcca tggttcagga cgaacacggc
     4261 acgtttacac tcgaaaaaac gccacaacgg attgtggtgc tggaactctc gttcgccgat
     4321 gcgctggccg ccgtggacgt cagcccgatc ggtattgccg acgataacga tgcaaaacgc
     4381 atcctgcccg aagtgcgtgc gcacctgaaa ccgtggcagt ccgtcggaac gcgcgcgcag
     4441 ccgagcctgg aagccattgc cgctctgaaa ccagacctga tcattgccga cagcagtcgc
     4501 catgcggggg tttacatcgc cttgcagcaa atcgcgccgg tactgctgct taagtcccgc
     4561 aacgaaacct acgctgaaaa tttgcaatct gcggctatca tcggcgaaat ggtgggtaaa
     4621 aagcgagaga tgcaggcacg tctggaacaa cataaagaga ggatggcgca gtgggccagc
     4681 cagcttccca aagggacacg cgtggccttt ggcacatcac gcgaacagca attcaacctg
     4741 catactcagg agacctggac cggcagcgtg ctggcctctc tggggctgaa cgttcccgct
     4801 gcgatggtgg gtgcgtccat gccgtccatc ggcctggagc aactgctggc ggtcaatcct
     4861 gcctggctgc tggttgccca ctatcgcgaa gagagcattg ttaaacgctg gcaacaagat
     4921 ccgctctggc agatgttaac cgccgcgcag aagcagcagg ttgcttcggt cgacagtaac
     4981 acctgggcgc ggatgcgcgg tatttttgct gcagagcgta ttgccgctga cacggtaaaa
     5041 atcttccacc atcagccgct taccgttgtg aaatgaccgc gataaaacac ccggtgctgc
     5101 tgtgggggct tcccattgca gcacttatta ttattttctg gctgagtctg ttttgctact
     5161 cggccattcc tgtttccgga gcagatgcaa cccgcgccct gctgcctgga cacacgccaa
     5221 cgctaccaga agcgctggtg caaaaccttc gtttgccacg aagcctggtc gccgttctga
     5281 tcggcgcaag cctggcgctc gcgggcacgc tgctgcaaac cctgacccac aacccaatgg
     5341 cctctccttc actgctcggc attaacagcg gcgcggcgct ggctatggcg cttaccagcg
     5401 cgctaagtcc gacgccgatt gcaggctatt ctctgtcgtt catcgcggca tgcgggggcg
     5461 gcgtgagctg gctgctggtc atgaccgcag gaggcggatt tcgtcatacc catgacagaa
     5521 acaaactgat cctcgcgggt atcgcgctgt cggccttttg tatgggcctt acccgcatca
     5581 ccctgctgct ggccgaagat catgcttacg gcatctttta ctggctggca ggcggagtgt
     5641 cccacgcccg ctggcaggat gtctggcagc tcttgccggt ggtggtcact gcagtccctg
     5701 tcgtgttgct gctggcgaat caactgaacc tgctcaacct cagcgacagc accgcccata
     5761 cgctgggagt gaacctgacg aggctacgtt tggtcatcaa tatgttagtg ctgcttctgg
     5821 ttggtgcgtg cgtcagcgtg gcaggtccgg tggcgtttat cggtctgctg gtgccacatc
     5881 tggcgcgctt ctgggcaggc ttcgatcagc gcaacgtact gccagtgagc atgctgctgg
     5941 gggccacgct gatgctgctg gcagatgtac tcgcacgcgc gctggccttc cccggagatc
     6001 tgcccgcagg cgcagtgctg gcgctgattg gcagcccttg ctttgtctgg cttgtgagga
     6061 ggcgaggatg aaaattgcgc tggttatttt catcaccctt gccctggcgg gctgtgcgct
     6121 gttatcactc catatgggag tgatccccgt gccgtggcgc gcgctgctga ccgactggca
     6181 ggccggacgc gagcattatt atgtattgat ggagtaccga ctgccgcgct tgctgctggc
     6241 actgtttgtc ggtgcagccc tcgccgtggc gggcgtgctg atacagggga ttgtgcgcaa
     6301 ccctctggca tcaccggata ttctcggcgt taaccatgcc gccagcctgg cctctgtggg
     6361 ggctctactt cttatgccgt cactgcccgt gatggtgctg ccgctgctgg cctttgcggg
     6421 cggcatggcg gggttgatat tactgaagat gctggcaaag acccaccagc cgatgaagct
     6481 ggcgctcacc ggcgtggcgc tttctgcatg ctgggccagc ctgacggatt atctgatgct
     6541 ctcgcgccca caggatgtga acaacgccct gctgtggctg accggcagct tatggggccg
     6601 tgactggagc tttgtgaaga ttgccatccc gctgatgatt ttatttctgc cgctgagcct
     6661 gagtttttgc cgcgatctcg acctccttgc actcggcgat gcgcgcgcca ccacgctcgg
     6721 tgtgtcggtg ccccataccc gattctgggc tttgttacta gctgtcgcca tgacatctac
     6781 cggcgtggcc gcctgcggcc cgattagctt tattggtctc gtggtgccgc atatgatgcg
     6841 tagcatcacc ggtggacgtc accgcagact gctgcctgtt tcagccctga caggtgcgtt
     6901 gctgttggtg gttgccgatc tgctggcgag aattattcat cccccactgg agctcccggt
     6961 tggcgtgctg accgccatta tcggtgcgcc gtggtttgtc tggttgcttg tgagaatgcg
     7021 ataaatgact ttacgaactg aaaatctgac ggtcagttac gggacagaca aggtacttaa
     7081 cgacgtttca ctctcactgc caacggggaa gatcaccgcc ctgatcggtc ctaacggttg
     7141 cgggaaatcg acgctgttaa actgtttttc gcggctttta atgccgcagt ctggcaccgt
     7201 atttctcggc gataatccca taaatatgct ctcatcgcgc cagttggccc gcaggctttc
     7261 gctgctgcct cagcaccatt taacgccaga ggggatcaca gtccaggagc tggtttcgta
     7321 tggtcgtaat ccctggctgt cactctgggg gcgtctctcc gctgaagaca atgcacgagt
     7381 taatgtcgcc atgaaccaga cccggatcaa tcatcttgcc gttcgtcggt taaccgagct
     7441 ttccggcggt cagcgccagc gcgcatttct ggcgatggtc ctggcccaga atacgcccgt
     7501 tgtattactt gatgagccaa ccacctatct tgatatcaat caccaggtgg acctgatgcg
     7561 gttgatgggc gaactccgga ctcaggggaa aacggtggtc gctgtgctgc acgaccttaa
     7621 tcaggctagc cggtactgcg atcaactggt ggtaatggca aacggacatg ttatggcgca
     7681 aggcacacca gaagaggtga tgaccccagg attgctgaga acagtattca gcgtggaagc
     7741 ggaaatacac cccgagccgg tatctggcag gccgatgtgc ctaatgaggt agattgcaca
     7801 ggccgtaaga accaaaccac gactgaatga aactggactg gcgccagcaa gcctgttcag
     7861 actggggctg aacttttccg gactctgaaa gattaccaat actcatcgtc catccgcttg
     7921 ctttaggctg acaggttcat aattaacgca aaccagagct gtacaggctt gggcgcggct
     7981 ttcaaaccaa tcgtgatcac ggcaatcaat tttgaactct gcttaacgga catttctgta
     8041 taacccttac ggcaacgaaa aacgcgaagt taaaatttta gaaacccaaa aacgtgacat
     8101 gactaagttt agatttcagg ggggggagat caaaaaattt cgctctgtgc cagagcggac
     8161 attcacggag ctggttcatt accaatgagg ttgggctttt gaggataaat caatgatcag
     8221 acgccaacgt aaatcaaaag caaccctgga acggaattgc taatccagtt tctgaccatc
     8281 gatttttcta aaaagtgtgc gtttgctact acttaggtag gtgcagcttt cttaatcacc
     8341 ggcagccacg ttatacaggc cagttgatgg atcgattgtt atcaatgata tcttcatgag
     8401 tcggtgtctc acccagctta ccgaagctgg cataaagtga aggcagacgg gcccgtcctt
     8461 ctcccttttt cgccagaggg aaagcgcgaa gcatggtggc agcctcccag tcacaacaat
     8521 aggatggtgt gcacggctgc tgacgccatg attcagcgat agagccggaa aatacggggt
     8581 caaagccggt atcattaacc agagtcatcg tgacctgtac tgcggctgga tgatctcctg
     8641 ctactgcaac tgctaggcga ccgcggctcc cttcaggtag tctgttgtgg tcaactaaaa
     8701 ctggcctccg cgttagagtt tttccagtat cggttttctg attcgtttgg tggtaaccca
     8761 ccattatatt cgtgcggtct tagtgcgctg taatatccaa cgatatagtc cgttattgcg
     8821 tgagctgcat cgctgaagct tacatagccc gtcgctggca cccattcgtt cttcagactc
     8881 ctgaagaagc gctccattgg gctgttatcc cagcagtttc cacgccgact catactctgc
     8941 ctgatccggt atcgccacag taactgccgg aactgcctgc tcgtataatg actgccttga
     9001 tcgcctggaa catcaccccg acgggcttac cacgggtttc ccatgccatt tccagtgctt
     9061 tcatggt
//
LOCUS       DADMJB010000165         9045 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.168, whole genome shotgun sequence.
ACCESSION   DADMJB010000165 DADMJB010000000
VERSION     DADMJB010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9045)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9045)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9045
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.168"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            195..1028
                     /gene="ppsR"
                     /locus_tag="JN078_003478"
     CDS             195..1028
                     /gene="ppsR"
                     /locus_tag="JN078_003478"
                     /EC_number="2.7.11.33"
                     /EC_number="2.7.4.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="posphoenolpyruvate synthetase regulatory
                     kinase/phosphorylase PpsR"
                     /protein_id="HAY9042550.1"
                     /translation="MDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVE
                     NESRARAVKDQIDAIYHQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQ
                     EMKLDPTPIAHRTHGLNPNNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSR
                     CGKTPTSLYLAMQFGIRTANYPFIADDMDNLVLPASLKPLQHKLFGLTIDPERLAAIR
                     EERRENSRYASLRQCRMEVAEVEALYRKNQIPWINSTNYSVEEIATKILDIMGLSRRM
                     Y"
     gene            1184..2230
                     /gene="aroH"
                     /locus_tag="JN078_003479"
     CDS             1184..2230
                     /gene="aroH"
                     /locus_tag="JN078_003479"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroH"
                     /protein_id="HAY9042551.1"
                     /translation="MNRTDELRTARIESLVTPAELALRYPVTPGVATHVTDSRRRIEK
                     ILNGEDKRLLVIIGPCSIHDLTAAMEYATRLQSLRNQYQSRLEIVMRTYFEKPRTVVG
                     WKGLISDPDLNGSYRVNHGLELARKLLLQVNELGVPTATEFLDMVTGQFIADLISWGA
                     IGARTTESQIHREMASALSCPVGFKNGTDGNTRIAVDAIRAARASHMFLSPDKNGQMT
                     IYQTSGNPYGHIIMRGGKKPNYHADDIAAACDTLHEFDLPEHLVVDFSHGNCQKQHRR
                     QLEVCEDICQQIRNGSTAIAGIMAESFLREGTQKIVGGQPLTYGQSITDPCLGWEDTE
                     RLVEKLASAVDTRF"
     gene            2362..2553
                     /gene="hemP"
                     /locus_tag="JN078_003480"
     CDS             2362..2553
                     /gene="hemP"
                     /locus_tag="JN078_003480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemin uptake protein HemP"
                     /protein_id="HAY9042552.1"
                     /translation="MRYTDSRKLTPETDANHKTASPQPIRRITSQTLLGPDGKLIIDH
                     DGQEYLLRKTQAGKLLLTK"
     gene            complement(2557..3993)
                     /locus_tag="JN078_003481"
     CDS             complement(2557..3993)
                     /locus_tag="JN078_003481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiU family protein"
                     /protein_id="HAY9042553.1"
                     /translation="MTLSFVTRWRDELPETYTALSPTPLNNARLIWHNIELANTLSIP
                     SSLFKNGAGVWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTM
                     DWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE
                     TAEPGAMLMRVAPSHLRFGHFEHFYYRRESEKVRQLADFAIRHYWSHLEDDEDKYRLW
                     FSDVVARTASLIAQWQTVGFAHGVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSD
                     HQGRYSFDNQPAVALWNLQRLAQTLSPFVAVDALNEALDSYQQVLLTHYGQRMRQKLG
                     FMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTEQHSAASPLRDEFIDRAAFDDW
                     FARYRGRLQQDEVSDSERQQLIQSVNPALVLRNWLAQRAIEAAEKGDMMELHRLHEAL
                     RNPFSDRDDDYVSRPPDWGKRLEVSCSS"
     gene            complement(4056..4769)
                     /gene="ydiV"
                     /locus_tag="JN078_003482"
     CDS             complement(4056..4769)
                     /gene="ydiV"
                     /locus_tag="JN078_003482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-FlhDC factor"
                     /protein_id="HAY9042554.1"
                     /translation="MKIFLENLYHSDCYFLPIRDNQQVLVGVELITHFSSEDGTVRIP
                     TSRVIAQLTEEQHWQLFSEQLELLKSCQHFFIQHKLFAWLNLTPQVATLLLERDNYAG
                     ELLKYPFIELLINENYPHLNEGKDNRGLLSLSQVYPLVLGNLGAGNSTMKAVFDGLFT
                     RVMLDKSFIQQQITHRSFEPFIRAIQAQISPCCNCIIAGGIDTAEILAQITPFDFHAL
                     QGCLWPAVPINQITTLVQR"
     gene            complement(5015..5479)
                     /locus_tag="JN078_003483"
     CDS             complement(5015..5479)
                     /locus_tag="JN078_003483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase"
                     /protein_id="HAY9042555.1"
                     /translation="MRFCLILITALFLAGCSHHKAPPPNARLSDSITVIAGLNDQLQS
                     WHGTPYRYGGMTRRGVDCSGFVVVTMRDRFDLQLPRETKQQASIGTQIDKDKLLPGDL
                     VFFKTGSGQNGLHVGIYDTNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI"
     gene            complement(5557..6306)
                     /gene="btuD"
                     /locus_tag="JN078_003484"
     CDS             complement(5557..6306)
                     /gene="btuD"
                     /locus_tag="JN078_003484"
                     /EC_number="7.6.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter ATP-binding protein
                     BtuD"
                     /protein_id="HAY9042556.1"
                     /translation="MSIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLA
                     RMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAMPVWHYLTLHQHDKT
                     RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVGLAAVVLQITPQANPAGQLLLLDEP
                     MNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRRE
                     EVLTPPNLAQAYGMNFRRLDIEGHRMLILTI"
     gene            complement(6306..6857)
                     /gene="btuE"
                     /locus_tag="JN078_003485"
     CDS             complement(6306..6857)
                     /gene="btuE"
                     /locus_tag="JN078_003485"
                     /EC_number="1.11.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional thioredoxin/glutathione peroxidase"
                     /protein_id="HAY9042557.1"
                     /translation="MQDSILTTVVKDIDGEVTTLEKYAGNVLLIVNVASKCGLTPQYE
                     QLENIQKAWADRGFVVLGFPCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIEVNGE
                     GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGLVIQ
                     RFSPDMTPEGPIVMESIKLALAK"
     gene            complement(6920..7900)
                     /gene="btuC"
                     /locus_tag="JN078_003486"
     CDS             complement(6920..7900)
                     /gene="btuC"
                     /locus_tag="JN078_003486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter permease BtuC"
                     /protein_id="HAY9042558.1"
                     /translation="MLTLARQQQRQNIRWLLCLSVLMLLALLLSLCAGEQWISLGDWF
                     TPRGELFVWQIRLPRTLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLI
                     AAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRHLSTSRLLLAGVALGIICSALM
                     TWAIYFSTSVDLRQLMYWMMGGFGGVDWRQSWLMLALIPVLLWICCQSRPMNMLALGE
                     ISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLL
                     PGCALAGASALLLADIVARLALAAAELLIGVVTATLGAPVFIWLLLKARR"
     gene            complement(8109..8438)
                     /locus_tag="JN078_003487"
     CDS             complement(8109..8438)
                     /locus_tag="JN078_003487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000997174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042559.1"
                     /translation="MNDDLERRVSCLESDVTEIKNNLITLTTRSESFATKSDVLEIRE
                     GLRLEMAESRQSLKSEMADLRQSLKVEMAEHRTELQKSFANQTWLLTGIVLSAMAVLV
                     AVVTVIK"
     gene            complement(8546..8908)
                     /locus_tag="JN078_003488"
     CDS             complement(8546..8908)
                     /locus_tag="JN078_003488"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042560.1"
                     /translation="MKFHLDELKRMATLDNFARFLNESSTNEKCLSCGDTDMYMYLTN
                     IVEVGPEPKTAEECDLGTFVMLDYIGPFTGYPGYEGHDRENIHNYEFRLTCNRCGFVH
                     RYSARAFMNWVGKQGDEK"
BASE COUNT         2389 a         2396 c         2051 g         2209 t
ORIGIN      
        1 gttgcgcaaa cctgctctat tcgacaattt ccacataaac catcggtata aacgaaacca
       61 taaaaatgaa atgctgtttt cataaaaaat aaaattgaag gttcatttta taaaccagac
      121 attacctcct acgcttctgt gcgtttttaa tttatgcttt catagaatta tgtctgcatc
      181 acgggaagaa caaaatggat aatgctgttg atcgccacgt tttttatatt tctgatggta
      241 cggcaataac tgcggaggta ttaggacacg cagtaatgtc acaatttccc gtcactatca
      301 gcagcattac gctgccgttt gtcgaaaatg agagccgtgc acgggcagtg aaggatcaga
      361 ttgacgcaat ttatcaccag acaggtgtgc gcccgctggt cttctactcc atcgtgttgc
      421 cggagattcg cgccatcatc ttgcaaagtg aaggcttttg ccaggatatc gttcaggcgc
      481 tggttgcccc gctacaacaa gagatgaaac tggatccaac gccgattgct catcgtaccc
      541 atggccttaa ccctaataat ctcaataaat atgatgcgcg cattgcggcg attgattaca
      601 cccttgccca cgatgacggc atttcgttgc gcaatctgga tcaggctcag gtgatcctgc
      661 tcggtgtttc tcgctgtggt aaaaccccca ccagtctgta tctggcaatg caatttggta
      721 tccgcacggc aaactacccc tttattgccg acgatatgga taatctggtg ctacccgcgt
      781 cgctcaaacc gcttcagcat aaattgttcg gcctgactat cgacccggaa cgtctggcgg
      841 cgattcgcga ggaacgtcgg gagaacagtc gctatgcctc gcttcgtcag tgcagaatgg
      901 aagtcgcgga agtggaagcc ttgtaccgta aaaatcagat cccgtggatt aacagtacca
      961 attattcggt agaagagatt gccaccaaga tcctcgatat catgggcctt agtcgccgaa
     1021 tgtactagag aactagtgcg ctggtttgtt ttttgttatc atgctaacca cccggcgagg
     1081 tgtgacacac ctcgcacttg aaatcagctg cgattggttt atcgtgatgc gcatcacttc
     1141 ccggtagtcc tgccgtagaa gcaacaaatt tctgagactt gtaatgaaca gaactgacga
     1201 actccgtact gcgcgtattg agagcctggt aacgcccgcc gaactcgcgc tacggtatcc
     1261 cgtaacgcct ggcgtcgcca cccatgtcac cgactcccgc cgcagaattg aaaaaatact
     1321 gaatggtgaa gataagcgac tgttggtcat tattggcccc tgctcgatcc acgatctcac
     1381 cgctgcaatg gagtacgcca cccgtctgca gtcgctgcgc aaccagtacc agtcacggct
     1441 ggaaatcgta atgcgcacct attttgaaaa accacgaact gttgtcggct ggaaagggct
     1501 aatctccgat ccggatttaa acggcagcta tcgggtaaat cacggtctgg agctggcgcg
     1561 caaattactt ttacaggtaa atgagctggg tgtccctacc gcgactgagt ttctcgatat
     1621 ggtgaccggt cagtttattg ctgatttaat cagttggggc gcgattggcg ctcgtactac
     1681 cgaaagtcag atccaccgcg aaatggcttc agcactctcc tgtccggtag gttttaaaaa
     1741 tggtaccgat ggcaacacgc ggattgccgt ggatgctatc cgcgcagccc gcgccagcca
     1801 tatgttcctc tcgccagaca aaaatggtca gatgaccatc tatcagacca gcggcaaccc
     1861 gtatggccac attattatgc gtggcggcaa aaaaccgaat tatcatgccg atgatatcgc
     1921 cgcagcctgc gatacgctgc acgagtttga tttacctgaa catctggtgg tggatttcag
     1981 ccacggtaac tgccagaagc agcaccgtcg ccagttagaa gtttgtgagg atatttgtca
     2041 gcaaatccgc aatggctcta cggcgattgc tggaattatg gcggaaagtt tcctgcgcga
     2101 aggaacgcaa aaaatcgtcg gcggtcagcc gctcacttac ggtcaatcca ttaccgaccc
     2161 gtgtctgggc tgggaagata ccgaacgcct ggtcgaaaaa ctcgcctctg cggtagatac
     2221 ccgcttctga atgcgtgccc attcctgatg ggatgggcat ttctgcgcaa cttgttgtct
     2281 tctcaacaca ttactgcttg ctctggcctg ccataatatt gataataaga atcattgtta
     2341 tatcaattat tattaatttt tatgcgttat acggatagca gaaaactcac gcctgaaacg
     2401 gatgccaatc acaagaccgc ttccccgcag cccatccggc gaattaccag ccagacactg
     2461 ttaggtccgg atggcaaact gattatcgat catgacgggc aagaatatct gctccgtaaa
     2521 actcaggctg gcaagctgct gttaactaag tagcctttaa ctcgagcagc tgacttccag
     2581 ccgtttaccc cagtcaggtg gacgactgac atagtcatca tctctgtcgc tgaaaggatt
     2641 tcgcaacgcc tcatgcaggc ggtgcaattc catcatatca cccttttctg ccgcttcaat
     2701 cgcccgttgc gccaaccagt tgcgcaatac cagagctggg ttaacgcttt gtatcagttg
     2761 ctgacgctca ctatcgctaa cctcgtcttg ttgcaaacgc ccccgataac gggcaaacca
     2821 gtcatcaaat gccgcacgat caataaactc atcacgtagc ggtgacgccg cgctgtgctg
     2881 ctcggtcaga ctcagcatgc ggaatgtgcg ggtataatcg ctgcgctctc gcgccatcag
     2941 actgaataat tcattcagta gcgcgttatc ctctttttgc tccgtcatga agcccagttt
     3001 ctgccgcatc cgttgtccat aatgcgtcaa caaaacctgc tgatagctgt ccagggcctc
     3061 attcagggca tctacggcaa caaatggtga caatgtctgc gccagacgct gtaaattcca
     3121 caacgcgaca gcaggttgat tatcaaagct ataacgccct tgatgatccg agtgattaca
     3181 aataaaaccg ggttcgtaat catcaagaaa accaaacggc ccgtaatcaa gcgtcagtcc
     3241 cagcagcgac atgttgtcgg tattcatcac cccatgtgca aagccgaccg tctgccattg
     3301 ggcaattaac gacgcggtac gtgcgacaac atcgctaaac cagagacggt atttgtcctc
     3361 atcatcttca agatgtgacc agtaatgacg aatagcaaag tcagctaact gacgaacctt
     3421 ttccgactcg cggcggtagt aaaaatgttc gaaatgacca aagcgcagat gacttggtgc
     3481 cacacgcatc agcatcgcgc ctggctccgc cgtttcccga tacactggcg aatcgctggt
     3541 gacgatactt aacgcgcggg tcgtcggaat gcccagataa tgcatcgcct cactggcgag
     3601 actttctcgt atcgtcgaac gtaaaaccgc ccgtccatca cccattcgcg aataaggcgt
     3661 caggccagca cctttcagat gccagtccat tgtagtgcca tcagcaagca gttgttcgcc
     3721 gagtaaaatg ccgcgcccat cacccagttg gcccgcccag acgccgaact gatgaccact
     3781 gtaaacctgc gccagtggtg acataccagg cagtagggct tcgccgcccc agacacctgc
     3841 gccattttta aacagcgacg atggaatact cagcgtgtta gccagttcga tattatgcca
     3901 aatcagccgg gcattattta aaggcgtagg ggaaagtgct gtataggttt ctggcaattc
     3961 atcgcgccag cgggtaacaa aagacagggt catagatcct cctgtttgat agtgtagacg
     4021 gttactctcg tcttaaacac cagcaaacag aagggttatc gctgaaccaa cgtcgttatc
     4081 tgatttatgg gaacggcagg ccacaggcat ccctggagag catggaaatc gaagggggta
     4141 atctgtgcca atatttctgc cgtatcaatg cctcccgcaa tgatgcaatt gcaacaaggg
     4201 gaaatttgcg cctggatcgc acgaataaac ggttcgaagg agcggtgcgt gatttgttgc
     4261 tgaataaaac ttttatccag catgacgcgg gtgaaaagac catcaaaaac cgctttcatt
     4321 gtgctattgc ctgctcccaa attacctaac acaaggggat acacttgcga taaggataaa
     4381 agaccgcgat tatcttttcc ttcattgaga tgcgggtaat tctcattaat caacagttca
     4441 ataaacggat attttaatag ttcgcctgcg taattatccc tctctaataa taatgtagcc
     4501 acttgtggcg ttaaattaag ccaggcaaag agtttatgtt gaataaaaaa atgttggcat
     4561 gattttagta attccaactg ctctgaaaat aattgccaat gttgctcctc ggtaagttgc
     4621 gctataaccc gactcgtcgg gatacgcacc gtgccatctt cactggagaa atgggtaatt
     4681 aactcaacgc cgacaaggac ttgctggtta tctcttatcg gcaggaaata gcaatcagaa
     4741 tgataaagat tctccaaaaa aatcttcatg gtaaccgtcc ctctcgaagg atgtttttca
     4801 gtatccggct aaaagggatg aggccataag acataacaat tacagaagga gtaactttca
     4861 tttgttccat gttaaccact ttttcagggg tcttttttta gattatcctg attataaacg
     4921 aataatccat ttacggaatt tttgtctgca aaatactact gtattcagga gtaaatggac
     4981 ggcgatgtat catcgccgtc catttttcga catactagat tcgtctcgcc tgccagaaat
     5041 ttttctgcca atagacatta tcaagtgagg aacgcatcac tcccttgctg gtagaggcgt
     5101 ggataaattg gttgttggta tcgtaaatac ctacatgcaa accattttgt ccggaccccg
     5161 ttttgaaaaa gaccaggtca cctggcagca acttgtcttt atcaatttgc gtgccaatag
     5221 aggcttgttg tttggtttca cggggcagct gcaaatcgaa acgatcgcgc atcgtcacaa
     5281 ccacaaatcc cgaacagtcc acaccgcgcc gcgtcatgcc accataacga tacggcgtgc
     5341 catgccagct ttgtagctgg tcgttcaaac cggcaataac ggtaatcgaa tcagaaagtc
     5401 tggcatttgg cggcggtgct ttatggtggc tacacccggc cagaaacagt gctgtgatca
     5461 aaataaggca gaaacgcatt ccgtacggtt cctctgtttt ttattcttgc attaatttag
     5521 cgtcgtaatt acccgatttt caagatacta atgaaatcag atggtcaaaa tcagcattct
     5581 gtgaccttcg atatccagac ggcgaaaatt catcccatag gcctgcgcca gatttggcgg
     5641 cgtgagcacc tcttctctgc gtccactggc cagcattttt ccacctttta gcaaccacgc
     5701 ccgatgcgca tgacgcaacg tgtggttgag atcgtgactg ctcatcacaa tcgccagtcc
     5761 ttgctgacac agcgcgctca gaattttgtc taacgcactt tgttgcgcaa catcaagact
     5821 gttcatcggc tcatcaagaa gcagcaattg gcctgcggga ttggcttgtg gtgtgatttg
     5881 caacaccacc gcagcaagac ctacgcgttg ccattcaccg ccggaaagtt gattggtgct
     5941 acgaccgagt ttgtcatcaa gagccagcgc ccctgcgaca tcattcagta gttcggtacg
     6001 cgttttatcg tgctgatgca gtgtcaggta gtgccagacc ggcattgcaa acggcggcgt
     6061 ctgctgttgt gaaagatagg cgcgatgcag cgcgagtttt gttgcggacc atgcttccag
     6121 gggttgcccc gcgaactgaa tgcttccctt accgctggtc attccggcca ttcgtgcaag
     6181 caaggtactc ttacccgcgc cattcggccc caccaggtgc aggatctccc cagcccgaac
     6241 ctcgccagaa agtggcccta ggcgggtaga ttccgcaaca tcctgtaact gcatcacaat
     6301 agacattatt ttgccaacgc cagtttaatg ctttccatca caatggggcc ttccggcgtc
     6361 atatccgggg aaaaacgctg gatgaccaat ccgtccctgc caactaaaaa tttctcaaaa
     6421 ttccataaaa tatcatcagg gtacagcggt gcacgacctt tgctgaccat acgggcatag
     6481 aatccgctct cttccggcgc gactgcggtc ggcgctgcgg caatcaattt ttgatacagc
     6541 ggatggcgtc cttcgccgtt aacttcaatc ttactgaaca tcgggaacgt caccccccat
     6601 gtggtggtac agtaagtttt aatctcttca tcgctgcccg gttcttgttc cagaaactgg
     6661 ttgcacggga atcccagcac cacaaaacct cgatcggccc aggctttctg aatattctcc
     6721 aactgctcat attgcggcgt taagccacac tttgaggcga cattgacaat caacagcaca
     6781 ttaccggcgt acttctccag cgtggtcact tcaccgtcga tatctttcac tacggtcgtc
     6841 agaatggaat cttgcatcgt ttctcctggg tgtggtcagt aaaaatctta gcttttaatc
     6901 atagaccgtc tttttgcggc taacgtcttg cttttaacaa taaccagata aacaccggcg
     6961 cacccaacgt tgcggtgacc acgccaataa gcagctctgc ggcagctaat gccaggcgcg
     7021 ctacaatatc ggccagcagc aatgcgctcg cccctgccag cgcgcagccg ggaagtaata
     7081 cgcgatgatc ggttaaacca cacaaccgaa gaatatgtgg gatcaccaga ccaataaagc
     7141 cgatagcacc cgccagcgcc acactgacgc caaccatcca gccggtcgcg gccaccagca
     7201 cattgcgcca gaaccacagg ggtaaaccca gttgccgcgc cgagatctcg ccaagtgcta
     7261 acatattcat cggcctggac tgacaacaga tccacaacaa cacggggatc aatgccagca
     7321 tcagccagct ttgccgccag tctacgccgc caaaaccgcc catcatccag tacatcagct
     7381 gacgtaaatc aacagaggtg gaaaagtaga tagcccacgt cattagtgcg ctacagataa
     7441 tccctaatgc aacgccagcc agcaataacc gactggtcga aagatgacga cgggcgaaac
     7501 gtaagagtat taaagtaatg ataagcgcgc cagcaatcgc acacagccct agcgcccagt
     7561 tggggagttg cccttgccca agcaataccg cggcgataag ccccacgcct gcgccgttag
     7621 agacgccaag tagtccaggt tctgccagag gattttcaaa caacgcctgc attacagcgc
     7681 cggatatagc cagcgccgca ccaaccaaca atacagccag cgtacgtggc aggcgaattt
     7741 gccagacgaa cagttcgcca cgaggagtaa accagtcacc tagcgagatc cattgttcac
     7801 cggcgcaaag gcttaaaaga agcgccagca gcatcaaaac tgacaggcat aataaccagc
     7861 gaatattttg tcgctgttgt tggcgggcaa gtgtcagcat ggtatccgtt ctgctgaagt
     7921 gtcatggcgt tgattttacg gtgactcttc gacagtgaaa agaaaaaagg ccgcagagcg
     7981 gccataaaca caagtaaaaa tcaacaagtt agataattat caaagactta cagacacaca
     8041 aaaacacagc caaccacaac aaataacagg gatgtggtca ctttgtggat catatcgccg
     8101 ccataaattt acttaataac agtaaccaca gccacaagca cggccatcgc agacaggaca
     8161 atacctgtga gtaaccaagt ctgatttgca aatgatttct gaagttcagt acgatgctca
     8221 gccatctcaa ctttcagaga ctggcgtaaa tcagccatct cagacttcag ggattggcgc
     8281 gattctgcca tctcaagcct caacccttcg cgaatctcca gtacatcaga tttggtagca
     8341 aaggattcgc ttcttgtggt gagagtaatc aggttgtttt tgatttcagt cacatcactt
     8401 tccaggcaac tgacccgccg ttcaaggtcg tcattcatgc catcacctcc atcattacca
     8461 cttcctgtta cttggttgtt ggatacatta taggcattct ctttcttttt tctgaaccgc
     8521 gaaatatgtg caacattctc tgccatcact tctcatcacc ctgcttgcct acccagttca
     8581 taaaggcccg ggccgagtaa cgatgaacaa acccacatct gttacaggta agtcggaatt
     8641 catagttatg gatattttcc cgatcatgtc cctcatatcc cggataccca gtaaatggac
     8701 cgatgtaatc aagcataaca aaagtgccta aatcacactc ctcagcagtt ttcggctcag
     8761 gccccacctc aacaatattc gtcaaataca tgtacatatc cgtatcgcca cacgacaaac
     8821 atttttcatt cgtagacgac tcattgagaa aacgcgcaaa attatcgagc gttgccattc
     8881 ttttaagttc atctaaatga aacttcactc ttaagcacct cctagtggat taaacctcac
     8941 cgcatcctgc aggtaatccg gcgcaagatg ggcataaatc atcgttgtct gaatctttgc
     9001 gtgccccaga attttctgga gcgtcagaat attgccgccg ttcat
//
LOCUS       DADMJB010000166         8734 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.169, whole genome shotgun sequence.
ACCESSION   DADMJB010000166 DADMJB010000000
VERSION     DADMJB010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8734)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8734)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8734
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.169"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            244..1155
                     /gene="ttdA"
                     /locus_tag="JN078_003489"
     CDS             244..1155
                     /gene="ttdA"
                     /locus_tag="JN078_003489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L(+)-tartrate dehydratase subunit alpha"
                     /protein_id="HAY9042561.1"
                     /translation="MMSESNKQQAVNKLTEIVANFTAMISTRMPDDVVDKLKQLKDAE
                     TSSMGKIIYHTMFDNMQKAIDLNRPACQDTGEIMFFVKVGSRFPLLGELQSILKQAVE
                     EATVKAPLRHNAVEIFDEVNTGKNTGSGVPWVTWDIIPDNDDAEIEVYMAGGGCTLPG
                     RSKVLMPSEGYEGVVKFVFENISTLAVNACPPVLVGVGIATSVETAAVLSRKAILRPI
                     GSRHPNPKAAELELRLEEGLNRLGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTG
                     CWAHRRGTLLVHADLTFENLSHTRSAL"
     gene            1152..1757
                     /gene="ttdB"
                     /locus_tag="JN078_003490"
     CDS             1152..1757
                     /gene="ttdB"
                     /locus_tag="JN078_003490"
                     /EC_number="4.2.1.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L(+)-tartrate dehydratase subunit beta"
                     /protein_id="HAY9042562.1"
                     /translation="MKKILTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRLIELK
                     RPIPYDLNGKAIFHAGPIVRKNGDKWEMVSVGPTTSMRMESFEREFIEQTGVKLVVGK
                     GGMGPLTEEGCQKFKALHVIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVCRGKEF
                     GPLIVSIDTHGNNLIAENKKLFAERRDPIVEEICEHVHYIK"
     gene            1806..3269
                     /locus_tag="JN078_003491"
     CDS             1806..3269
                     /locus_tag="JN078_003491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HAY9042563.1"
                     /translation="MKPSTEWWRYLAPLAVIAIIALIPVPAGLESHTWLYFAVFTGVI
                     VGLILEPVPGAVVAMVGISIIAILSPWLLFSPEQLAQPGFKFTAKSLSWAVFGFSNSV
                     IWLIFAAFMFGTGYEKTGLGRRIALILVKKMGHRTLFLGYAVMFSELILAPVTPSNSA
                     RGAGIIYPIIRNLPPLYQSQPNDSSSRSIGSYIMWMGIVADCVTSAIFLTAMAPNLLL
                     IGLMKSASHATLSWGDWFLGMLPLSILLVLLVPWLDYVLYPPVLKSGDQVPRWAETEL
                     QAMGPLCSREKRMLGLMVGALVLWIFGGDYIDAAMVGYSVVALMLLLRIISWDDIVSN
                     KAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLSGYSPTMVMVALIVVFYLLRY
                     FFASATAYTSALAPMMIAAALAMPEIPLPVFCLMVGAAIGLGSILTPYATGPSPIYYG
                     SGYLPTADYWRLGAIFGLIFLVLLVITGLLWMPVVLL"
     gene            complement(3312..4325)
                     /gene="tsaD"
                     /locus_tag="JN078_003492"
     CDS             complement(3312..4325)
                     /gene="tsaD"
                     /locus_tag="JN078_003492"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001264383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HAY9042564.1"
                     /translation="MRVLGIETSCDETGIAIYDDEKGLLANQLYSQVKLHADYGGVVP
                     ELASRDHVRKTVPLIQAALKESGLTAKDIDAVAYTAGPGLVGALLVGATVGRSLAFAW
                     NVPAIPVHHMEGHLLAPMLEDNPPEFPFVALLVSGGHTQLISVTGIGQYELLGESIDD
                     AAGEAFDKTAKLLGLDYPGGPLLSKMAAQGTAGRFVFPRPMTDRPGLDFSFSGLKTFA
                     ANTIRDNGTDDQTRADIARAFEDAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLR
                     AKLAEMMKKRRGEVFYARPEFCTDNGAMIAYAGMVRFKAGATADLGVSVRPRWPLAEL
                     PAA"
     gene            4562..4777
                     /gene="rpsU"
                     /locus_tag="JN078_003493"
     CDS             4562..4777
                     /gene="rpsU"
                     /locus_tag="JN078_003493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HAY9042565.1"
                     /translation="MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTE
                     RKRAKASAVKRHAKKLARENARRTRLY"
     gene            4888..6633
                     /gene="dnaG"
                     /locus_tag="JN078_003494"
     CDS             4888..6633
                     /gene="dnaG"
                     /locus_tag="JN078_003494"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HAY9042566.1"
                     /translation="MAGRIPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHN
                     EKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAG
                     SGPSQIERHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGF
                     APPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGF
                     GGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQY
                     GINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQ
                     LRFMFLPDGEDPDTLVRKEGKEAFEARMDQAMPLSAFLFNSLMPQVDLSTPDGRARLS
                     TLALPLISQVPGETLRIYLRQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTT
                     MRILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYR
                     GTNNAATLEKLSMWDDIADKNIAEQTFTDSLNHMFDSLLELRQEELIARERTHGLSNE
                     ERLELWTLNQELAKK"
     gene            6828..8669
                     /gene="rpoD"
                     /locus_tag="JN078_003495"
     CDS             6828..8669
                     /gene="rpoD"
                     /locus_tag="JN078_003495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HAY9042567.1"
                     /translation="MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDI
                     IQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYM
                     REMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSD
                     LITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAR
                     EKFAELRAQYVVTRDTIKAKGRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVM
                     MDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVS
                     EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAK
                     KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI
                     RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME
                     TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID
                     MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD"
BASE COUNT         2110 a         2329 c         2333 g         1962 t
ORIGIN      
        1 cctgcaagtc tttggctaaa ggccagctat tcagcatcgt taattatccg cagttgtgat
       61 aagcgcagtg tatttcgcaa aacattgcca ttccctgctc tggcgcaata ttcattctta
      121 ttttcgcgtt gattcacgaa ctgttaatta catattcacg gtggcaaaaa atataaaacc
      181 acatttttag tggtagttta tggcggtgaa tttttccaga caaatacaaa aactggagtt
      241 gccatgatga gcgaaagtaa taagcaacag gcagtgaata agttgacaga gattgtcgct
      301 aactttaccg ccatgatttc tacccgaatg cctgatgacg tggtggataa actaaaacag
      361 ctaaaggatg ccgaaacgtc gtcgatgggg aaaattatct accatacgat gttcgacaac
      421 atgcaaaaag cgattgacct gaatcgtcct gcctgtcagg acaccgggga gattatgttc
      481 ttcgttaaag tcggttcccg cttcccactg cttggcgagc tgcaaagcat actcaaacaa
      541 gccgtggaag aggcaaccgt caaagcgcca ctacgtcaca atgcggtaga aatttttgac
      601 gaagtaaaca ccggcaaaaa taccggtagc ggcgtaccgt gggtcacctg ggacatcatc
      661 cccgacaatg acgatgcgga aatcgaagtt tacatggcag gtggcggctg cacgctacct
      721 ggccgctcga aagtgttaat gccgtcagaa ggctacgaag gcgtggtgaa attcgtcttc
      781 gaaaatatct ccaccctcgc cgtaaacgcc tgtccaccgg tactggtggg cgtgggcatc
      841 gccacctcgg tggaaaccgc cgccgtactc tcgcgtaaag ccattttgcg cccgattggc
      901 agccgccatc ccaatccaaa agcggcagaa ctggagctac gcctggaaga aggactcaac
      961 cgtctgggga ttggtccaca agggctgact ggcaacagtt cagtgatggg cgtacatatc
     1021 gaatctgccg cccgccatcc gtcaaccatc ggcgttgctg tctctaccgg ctgctgggcg
     1081 catcgtcgcg gcacactgct ggttcatgcc gatctcacct ttgaaaatct gtctcacacc
     1141 cggagcgcgt tatgaaaaag atcctgacaa ccccgatcaa agctgaagat ctgcaagata
     1201 ttcgcgtcgg cgatgtgatc tacctgaccg gtacgctggt gacctgccgt gacgtttgtc
     1261 accgccgctt gatcgaactg aaacgtccga tcccttacga tctcaacggc aaagcgattt
     1321 tccacgctgg ccccatcgtg cgcaaaaacg gcgataaatg ggagatggtt tccgttggcc
     1381 cgacaaccag tatgcgtatg gaaagttttg aacgtgaatt tatcgagcag accggcgtga
     1441 aactggtggt tggcaaaggc ggaatggggc cgctgaccga agaaggctgc cagaaattca
     1501 aggcgctaca tgtgattttc ccggcaggct gcgcggtgct ggcggcaacc caggtggaag
     1561 agattgaaga agtgcactgg acagagctcg gaatgccgga gtcgctgtgg gtctgccggg
     1621 gcaaagagtt cggcccgctg attgtctcta ttgataccca cggcaacaat ctgatagccg
     1681 aaaacaaaaa gctgttcgcc gaacgccgcg atcccatcgt ggaagagatc tgcgagcacg
     1741 tccattacat caaataaccc tcccggagag gctcgccccc tctccttttt cgcaggcata
     1801 acacgatgaa accttccact gaatggtggc gataccttgc gccgctggcg gtcatcgcca
     1861 ttattgctct aattccggtt cccgcagggc tggagagtca tacctggctc tactttgccg
     1921 tttttactgg cgtgatcgtt ggactgatcc tcgaacccgt gccgggtgcc gtggtggcga
     1981 tggtgggtat ctccatcatc gccatactct ctccctggct gctgttcagc cccgaacagc
     2041 tcgcccagcc aggctttaag ttcaccgcca aatccctctc ctgggcagtt tttggttttt
     2101 ctaattcggt tatctggctc attttcgccg cctttatgtt tggcacaggc tatgaaaaaa
     2161 ccgggcttgg acgccgcatt gcgctgattc tggtgaaaaa gatgggacat cgcacgctgt
     2221 ttctcggcta tgcggtgatg ttctccgagc tgatcctcgc acctgtaaca ccgtccaact
     2281 cggcgcgtgg tgcggggatt atctatccca tcatccgtaa cctgccaccg ctctatcaat
     2341 cacaaccaaa cgacagcagt tcgcgcagca ttggctcgta catcatgtgg atggggattg
     2401 ttgccgactg cgtgaccagc gccattttct tgacggcgat ggcaccaaac ttgctgttaa
     2461 ttggactgat gaaaagcgca tctcacgcca cgctgagttg gggcgactgg ttcctcggga
     2521 tgttgccgct cagtattttg ctggtgctgc tggttccctg gctggattat gtgctgtacc
     2581 cgccggtact gaagtctggc gatcaggtgc cgcgctgggc agagacggaa ctgcaggcaa
     2641 tgggcccgct ctgttcgcgt gaaaaacgga tgctggggct gatggtaggc gcgctggtgc
     2701 tgtggatttt cggcggtgat tatatcgatg ccgcgatggt cggttacagc gtggtggcac
     2761 tgatgctgct tctgcgcatt atcagttggg acgacattgt cagtaataaa gcggcgtgga
     2821 acgttttctt ctggctggcc tcgcttatca ccctcgctac cggactcaac aacactggtt
     2881 ttattagctg gtttggcaaa ctgttagcag gcagcttaag cggttattcg ccaacgatgg
     2941 tgatggtggc gttgattgtg gtgttttatc tgctgcgcta ctttttcgcc agcgccacgg
     3001 cgtatacctc cgccctcgca ccgatgatga ttgccgctgc gctggcgatg ccggaaatcc
     3061 cgctgccggt gttctgccta atggttggcg cggcaattgg tctggggagc attcttacac
     3121 catacgccac cggacccagt ccgatttact acggtagtgg ttatctgcca acggcggatt
     3181 actggcgact gggggcgatt tttgggctga tattcctcgt gttgctggtg attaccggct
     3241 tactgtggat gcccgtggtg ttgctttaag tgaggacggt gccggaaatt gctctccggc
     3301 acccaatagt tttacgcagc cggtaactcc gccagcggcc agcgcggacg cacgctaacg
     3361 ccgagatccg ccgtcgcgcc tgctttaaac cgcaccattc cggcataggc gatcatcgcg
     3421 ccgttatcag tacaaaactc cggacgcgcg tagaacactt cgccgcggcg ttttttcatc
     3481 atttccgcca gcttcgcccg taacgtgcgg ttagcactca cgccgcccgc catgaccagt
     3541 cgcttaaagc ccgtctgatc caacgctcgc ttacacttaa tcatcaacgt atcgaccacc
     3601 gcatcttcaa aggcgcgggc gatatcagca cgcgtctggt cgtcggtgcc gttgtcacga
     3661 atcgtgttcg ccgcaaaggt tttcagacca gaaaagctga aatccagccc cggacggtcg
     3721 gtcatcggac gcgggaaaac aaagcgcccg gcagtaccct gagccgccat tttcgacagt
     3781 aacggtccgc caggataatc cagccccagc agcttcgcgg ttttatcaaa cgcttcaccg
     3841 gcggcatcat cgatagactc gccgagcagc tcgtactgac caatgccagt cacgctgatt
     3901 aactgcgtat gaccgccgga caccagcagc gcgacaaacg gaaattccgg cgggttatct
     3961 tccagcatcg gcgctaacag atgcccttcc atatggtgta ccgggattgc cggaacgttc
     4021 caggcaaacg ccagagaacg ccccacggtt gcgccaacca gcagtgcgcc gactaatcca
     4081 gggcctgcgg tataggccac agcatcaatg tcttttgccg ttaagccaga ctcctttagc
     4141 gccgcctgga tcaacggtac ggttttgcgc acgtgatcgc gggaggccag ttcaggcacg
     4201 acgccgccgt agtcagcgtg caatttcacc tgactataca attggttggc taacaaacct
     4261 ttttcatcgt cgtaaatggc gatgccggtt tcatcgcagg aagtttcaat acccagtaca
     4321 cgcatgactt gttttacctc gctttattac cgcgcagtgt aggaccaatg cgggttgatg
     4381 taaaactttg ttcgcccctg gagaaagcct cgtgtatact cctcaccctt ataaaagtcc
     4441 ctttcaaaaa ggccgcggtg ctttacaaag cagcagcaat tgcagtaaaa ttccgcacca
     4501 ttttgaaata agctggcgtt gatgccagcg gcaaaccgaa ttaatcaaag gtgagaggca
     4561 catgccggta attaaagtac gtgaaaacga gccgttcgac gtagctctgc gtcgcttcaa
     4621 gcgttcctgc gaaaaagcag gtgttctggc ggaagttcgt cgtcgtgagt tctatgaaaa
     4681 accgactacc gaacgtaagc gcgctaaagc ttctgcagtg aaacgtcacg cgaagaaact
     4741 ggctcgcgaa aacgcacgcc gcactcgtct gtactaattc cccgagagcg ttgctctccg
     4801 atcagaccga gttgtagttg taaggccgtg cttccgaaag gaatgcgcgg cttattttcg
     4861 tttatgaatt gctaaaaatc ggggcctatg gctggacgaa tcccacgcgt attcattaat
     4921 gatctactgg cacgcactga catcgtcgat ctgatcgatg cccgtgtgaa gctgaaaaag
     4981 cagggcaaga atttccacgc gtgttgtcca ttccacaacg agaaaacccc gtcattcacc
     5041 gttaacggtg agaaacagtt ttaccactgc tttggatgtg gcgcgcacgg caacgcgatc
     5101 gacttcctga tgaactacga caagcttgag ttcgtcgaaa cggtcgaaga gctggcagca
     5161 atgcacaatc ttgaagtgcc atttgaagca ggcagcggcc ccagccagat cgagcgccat
     5221 cagaggcaaa cgctttatca gttgatggac ggtctgaata cgttttacca acaatcttta
     5281 caacaacctg ttgccacgtc tgcgcgccag tatctggaaa aacgcggatt aagccacgag
     5341 gttatcgctc gctttgcgat tggttttgcg ccccccggct gggacaacgt cctgaagcgg
     5401 tttggcggca atccagaaaa tcgccagtca ttgattgatg cggggatgtt ggtcactaac
     5461 gatcagggac gcagttacga tcgtttccgc gagcgggtga tgttccccat tcgcgataaa
     5521 cgcggtcggg tgattggttt tggcgggcgc gtgctgggca acgatacccc caaatacctg
     5581 aactcgccgg aaacagacat tttccataaa ggccgccagc tttacggtct ttatgaagcg
     5641 cagcaggata acgctgaacc caatcgtctg cttgtggtcg aaggctatat ggacgtggtg
     5701 gcgctggcgc aatacggcat taattacgcc gttgcgtcgt taggtacgtc aaccaccgcc
     5761 gatcacatac aactgttgtt ccgcgcgacc aacaatgtca tttgctgtta tgacggcgac
     5821 cgtgcaggcc gtgatgccgc atggcgagcg ctggaaacgg cgctgcctta catgacagac
     5881 ggccgtcagc tacgctttat gtttttgccg gatggcgaag accctgacac gctggtacga
     5941 aaagaaggta aagaagcgtt tgaagcgcgg atggatcagg cgatgccact ctccgcattt
     6001 ctgtttaaca gcctgatgcc gcaagttgat ctgagtaccc ctgacgggcg cgcacgtttg
     6061 agtacgctgg cactgccatt gatatcgcaa gtgccgggcg aaacgctgcg aatatatctt
     6121 cgtcaggaat taggcaacaa attaggcata cttgatgaca gccagcttga acgattaatg
     6181 ccaaaagcgg cagagagcgg cgtttctcgc cctgttccgc agctaaaacg cacgaccatg
     6241 cgtatactta tagggttgct ggtgcaaaat ccagaattag cgacgttggt cccgccgctt
     6301 gagaatctgg atgaaaataa gctccctgga cttggcttat tcagagaact ggtcaacact
     6361 tgtctctccc agccaggtct gaccaccggg caacttttag agcactatcg tggtacaaat
     6421 aatgctgcca cccttgaaaa actgtcgatg tgggacgata tagcagataa gaatattgct
     6481 gagcaaacct tcaccgactc actcaaccat atgtttgatt cgctgcttga actgcgccag
     6541 gaagagttaa tcgctcgtga gcgcacgcat ggtttaagca acgaagaacg cctggagctc
     6601 tggacattaa accaggagct ggcgaaaaag tgatttaacg gcttaagtgc cgaagagcga
     6661 tcgggaagcc cccgacagcc gcactgagag gcagcggcaa atatataagt acgccctcgt
     6721 aattatcgtt ggcggtaaac aaccgttgga tttcagcgtt aacggctgaa ggacatcggg
     6781 tcaatcgccc aacaccaacc tcatgaaata agtgtggata ccgtcttatg gagcaaaacc
     6841 cgcagtcaca gctgaaactt cttgtcaccc gtggtaagga gcaaggctat ctgacctatg
     6901 ccgaggtcaa tgaccatctg ccggaagata tcgtcgattc agatcagatc gaagacatca
     6961 tccaaatgat caacgacatg ggcattcagg tgatggaaga agcaccggat gccgatgatc
     7021 tgatgctggc tgaaaacacc gcggacgaag atgctgccga agccgccgcg caggtgcttt
     7081 ccagcgtgga atctgaaatc gggcgcacga ctgacccggt acgcatgtac atgcgtgaaa
     7141 tgggcaccgt tgaactgttg acccgcgaag gcgaaattga catcgctaag cgtattgaag
     7201 acgggatcaa ccaggttcaa tgctccgttg ctgaatatcc ggaagcgatc acctatctgc
     7261 tggaacagta cgatcgtgtt gaagcagaag aagcgcgtct gtccgatctg atcaccggct
     7321 ttgttgaccc gaacgcagaa gaagatctgg cacctaccgc cactcacgtc ggttctgagc
     7381 tttcccagga agatctggac gatgacgaag atgaagacga agaagatggc gatgacgaca
     7441 gcgccgatga tgacaacagc atcgacccgg aactggctcg cgaaaaattt gcggaactac
     7501 gcgctcagta cgttgtaacg cgtgacacca tcaaagcgaa aggtcgcagt cacgctgccg
     7561 ctcaggaaga gatcctgaaa ctgtctgaag tattcaaaca gttccgcctg gtgccgaagc
     7621 agtttgacta cctggtcaac agcatgcgcg tcatgatgga ccgcgttcgt acgcaagaac
     7681 gtctgatcat gaagctctgc gttgagcagt gcaaaatgcc gaagaaaaac ttcattaccc
     7741 tgtttaccgg caacgaaacc agcgatacct ggttcaacgc ggcaattgcg atgaacaagc
     7801 cgtggtcgga aaaactgcac gatgtctctg aagaagtgca tcgcgccctg cagaaactgc
     7861 agcagattga agaagaaacc ggcctgacca tcgagcaggt taaagatatc aaccgtcgta
     7921 tgtccatcgg tgaagcgaaa gcccgccgtg cgaagaaaga gatggttgaa gcgaacttac
     7981 gtctggttat ttctatcgcc aagaaataca ccaaccgtgg cttgcagttc cttgacctga
     8041 ttcaggaagg caacatcggt ctgatgaaag cggttgataa attcgaatac cgccgtggtt
     8101 acaagttctc cacctacgca acctggtgga tccgtcaggc gatcacccgt tctatcgcgg
     8161 atcaggcgcg caccatccgt attccggtgc atatgattga gactatcaac aaactcaacc
     8221 gtatttctcg ccagatgctg caagagatgg gccgtgaacc gacgccggaa gaactggctg
     8281 aacgtatgct gatgccggaa gacaagatcc gcaaagtgct gaagatcgcc aaagagccaa
     8341 tctccatgga aacgccgatc ggtgatgatg aagattcgca tctgggggat ttcatcgagg
     8401 ataccaccct cgagctgccg ctggattctg cgaccaccga aagcctgcgt gcggcaacgc
     8461 acgacgtgct ggctggcctg accgcgcgtg aagcgaaagt tctgcgtatg cgtttcggta
     8521 tcgatatgaa caccgaccac acgctggaag aagtgggtaa acagttcgac gttacccgcg
     8581 aacgtatccg tcagatcgaa gcgaaggcgc tgcgcaaact gcgtcacccg agccgttctg
     8641 aagtgttgcg tagcttcctg gacgattaat cggtaggccg gatcaggcgt tacgccgcac
     8701 ccggcactag tccctctgca caaacgccac cttt
//
LOCUS       DADMJB010000167         8722 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.170, whole genome shotgun sequence.
ACCESSION   DADMJB010000167 DADMJB010000000
VERSION     DADMJB010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8722)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8722)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8722
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.170"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            132..197
                     /locus_tag="JN078_003496"
     CDS             132..197
                     /locus_tag="JN078_003496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042568.1"
                     /translation="MYIFITHFFTEYVIFKYLLPI"
     gene            336..947
                     /gene="ruvA"
                     /locus_tag="JN078_003497"
     CDS             336..947
                     /gene="ruvA"
                     /locus_tag="JN078_003497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012131997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HAY9042569.1"
                     /translation="MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQE
                     AIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAV
                     EREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAE
                     QEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL"
     gene            956..1966
                     /gene="ruvB"
                     /locus_tag="JN078_003498"
     CDS             956..1966
                     /gene="ruvB"
                     /locus_tag="JN078_003498"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017441950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HAY9042570.1"
                     /translation="MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIF
                     IKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLT
                     NLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
                     TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARG
                     TPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKF
                     FGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE
                     MP"
     gene            complement(2016..2801)
                     /gene="znuB"
                     /locus_tag="JN078_003499"
     CDS             complement(2016..2801)
                     /gene="znuB"
                     /locus_tag="JN078_003499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter permease subunit ZnuB"
                     /protein_id="HAY9042571.1"
                     /translation="MIELLFPGWLAGIMLACAAGPLGSFVVWRRMSYFGDTLAHASLL
                     GVAFGLLLDVNPFYAVIAVTLLLAGGLVWLEKRPQLALDTLLGIMAHSALSLGLVVVS
                     LMSNIRVDLMAYLFGDLLAVTPEDLIAIAIGVVIVVAILFWQWRNLLSMTISPDLAFV
                     DGVKLQRVKLLLMLVTALTIGVAMKFVGALIITSLLIIPAATARRFARTPEQMAGVAV
                     LVGMVAVTGGLTFSAFYDTPAGPSVVLCAALLFIISMMKKQAS"
     gene            complement(2798..3553)
                     /gene="znuC"
                     /locus_tag="JN078_003500"
     CDS             complement(2798..3553)
                     /gene="znuC"
                     /locus_tag="JN078_003500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter ATP-binding protein ZnuC"
                     /protein_id="HAY9042572.1"
                     /translation="MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKS
                     TLVRVVLGLVTPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTHKEDIL
                     PALKRVQAGHLINAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALY
                     DLIDQLRRELDCGVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVSLHPEFISMFG
                     PRGAEQLGIYRHHHNHRHDLQGRIVLRRGNDRS"
     gene            3632..4564
                     /gene="znuA"
                     /locus_tag="JN078_003501"
     CDS             3632..4564
                     /gene="znuA"
                     /locus_tag="JN078_003501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein
                     ZnuA"
                     /protein_id="HAY9042573.1"
                     /translation="MLHKKTLLFAALSAALWGGATQAADAAVVASLKPVGFIASAIAD
                     GVTETEVLLPDGASEHDYSLRPSDVKRLQNADLVVWVGPEMEAFMQKPVSKLLGAKQV
                     TIAQLEDVKLLLMKSIHGDDDDHDHAEKSEEDHHHGDFNMHLWLSPEIARATAVAIHG
                     KLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFG
                     LTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMG
                     TLDPLGTNIKLGKTSYSEFLSQLANQYASCLKGD"
     gene            4580..5902
                     /gene="mepM"
                     /locus_tag="JN078_003502"
     CDS             4580..5902
                     /gene="mepM"
                     /locus_tag="JN078_003502"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein DD-endopeptidase MepM"
                     /protein_id="HAY9042574.1"
                     /translation="MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRD
                     ATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAIPQDELDDKIAGEAGVHEYVVST
                     GDTLSSILNQYGIDMGDITQLAAADKELRNLKIGQQLSWTLTADGELQRLTWEVSRRE
                     TRTYDRTAANGFKMTSEMQQGEWVNNLLKGTVGGSFVASARNAGLTSAEVSAVIKAMQ
                     WQMDFRKLKKGDEFAVLMSREMLDGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRN
                     GTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVGDGE
                     VVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGP
                     HLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREFLAQAKEIVPQLRFD"
     gene            6022..6993
                     /gene="lpxM"
                     /locus_tag="JN078_003503"
                     /gene_synonym="msbB"
     CDS             6022..6993
                     /gene="lpxM"
                     /locus_tag="JN078_003503"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416369.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HAY9042575.1"
                     /translation="METKKNNSEYIPEFDKSFRHPRYWGAWLGVAAMVGIALTPPKFR
                     DPILARLGRFAGRLGKSSRRRALINLSLCFPERSEAEREAIVDEMFATAPQAMAMMAE
                     LAIRGPEKIQPRVDWQGLQIIEEMRRNNEKVIFLVPHGWAVDIPAMLMASQGQKMAAM
                     FHNQGNPVFDYVWNTVRRRFGGRLHARNDGIKPFIQSVRQGYWGYYLPDQDHGPEHSE
                     FVDFFATYKATLPAIGRLMKVCRARVVPLFPIYDGKTHRLTIQVRPPMDDLLEADDHT
                     IARRMNEEVEIFVGPRPEQYTWILKLLKTRRPGEIQPYKRKDLYPIK"
     gene            complement(7082..>8722)
                     /locus_tag="JN078_003504"
     CDS             complement(7082..>8722)
                     /locus_tag="JN078_003504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000281525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HAY9042576.1"
                     /translation="IDGLPHVDFSRVDKFFTYADAFRESLPIISGELYFEAHQGCFTS
                     ESATKAHNRNMENKLHDAEFFTTITNNMTSILRSEFDEIWKEMLTLQFHDILPGSCIS
                     RVYLETEKEYIKLEAKTEKIISDTQSTLLSKIDTSSYKDPHILFNTTCFARNEWININ
                     NNWLKARVNSYGYAVIDPKNKIVNGLKAESRSIENNYIKLLFSENGDLISLYDKRYGK
                     EYITENMHSEIRAYHEDAGFFAAWDFASNYRDGESYVLLAEKMTTVISGPKTTMTLIY
                     HYNSSYLRFAFTLTQDSPRVDVQTFIDWHEPNVSLKVKFPVSVQTSLAQCQIQFGVID
                     RPTHSDDSFAFAKDEIPAHHWVDLSDRETGIALIAKNKYGYRVKDQTLELTLLRSQHK
                     PGEIVKTDNYDNFLINNFADIGKQKFIFSLFPHHGDYRVGGVINQAYIMNHPLQVVPV
                     KPHPGELPPSLSFFAIDTNSVIIETIKLAEDGDGIIVRLYESHGLEISAMLSWVCNYH
                     YVQYVDLQENKLDDSFYCNQYCNLEFKPFEIITLRLTQ"
BASE COUNT         2375 a         2012 c         2127 g         2208 t
ORIGIN      
        1 cacctataca tgtaaagacg atatctccaa tttcatattc agcagggtaa ttaatattca
       61 cgttgtcatt ccattgaaat agatacgaat atacgtaata gcataaaaaa attatttttt
      121 caggaggtgc aatgtatatt tttattacgc atttcttcac tgaatacgta atatttaaat
      181 atttgcttcc aatataacct gtagaataaa tcatactgcg ccatttttca gttcatcgag
      241 acacctcgca agttttcttc atccttcgct ggatatctat ccagcatttt tttatcatac
      301 agcattatct ttgattcatt acgcaggagc gtcatgtgat aggcagactc agaggcatca
      361 tcattgaaaa acaacccccg ctggtgttaa ttgaagtggg cggcgtaggc tatgaagtgc
      421 atatgccgat gacctgtttt tatgaactcc ctgaagcggg tcaggaagcg atcgttttca
      481 cccactttgt ggtgcgtgaa gacgcgcaac tgctgtacgg ttttaacaat aaacaagagc
      541 gcacattgtt caaagagttg atcaaaacca acggcgtcgg cccgaagttg gcgctggcga
      601 tcctctccgg aatgtcagcg cagcagttcg ttaatgccgt tgaacgtgaa gaagtggggg
      661 cactggtgaa actgccgggt attggcaaaa aaaccgccga acgcttgatt gttgaaatga
      721 aagaccgatt taaaggtttg catggcgatc tgtttacccc tgccgccgac ctggtactca
      781 catcacctgc cagcccggcg accgacgatg ctgaacagga agcggttgcc gcgctggtgg
      841 cgctgggcta taaaccacaa gaagcaagcc gcatggtgag caaaatcgct cgccctgacg
      901 ccagcagtga aacattaatt cgcgaagccc tacgcgccgc gttatgaggt aaaggatgat
      961 tgaagcagac cgtctgattt ctgccggtac cactttgccg gaagatgtag cagatcgcgc
     1021 cattcgccct aaattactgg aagagtatgt tggtcagccg caggttcgtt cacagatgga
     1081 gattttcatc aaagcagcga aactgcgcgg cgatgccctc gatcatttgt tgatttttgg
     1141 tcctccgggg ttgggtaaaa ctacgcttgc caacattgtc gccaatgaaa tgggcgttaa
     1201 tttacgcacg acttctggtc cggtgctgga aaaggcgggc gatctggcag cgatgctcac
     1261 taaccttgaa ccgcatgacg tgctgtttat tgatgagatc caccgtttat cgccagttgt
     1321 tgaagaagtg ctgtacccgg caatggaaga ctaccaactg gatatcatga ttggtgaagg
     1381 tccggcggca cgctccatta aaattgattt gccgccgttt accctgattg gcgcaaccac
     1441 gcgcgcaggt tcgctgacat caccgttgcg cgaccgtttt ggtattgtgc aacgtctgga
     1501 gttttatcag gtgccggatc tgcaatatat cgttagtcgc agtgcacgct ttatggggct
     1561 tgagatgagt gatgacggcg cgctggaagt tgctcgtcgc gctcgcggta cgccacgtat
     1621 tgccaaccgt ctgctgcgtc gagtgcgtga tttcgccgaa gtgaagcacg atggcaccat
     1681 ctcggcagat atcgctgctc aggcgctgga catgttgaat gtcgatgctg aaggtttcga
     1741 ttatatggac cgcaaattgt tgctggcggt aatcgataag ttctttggtg ggccggtagg
     1801 tctggataac ctggcggcgg ctattggcga agaacgtgaa accattgagg atgtgctgga
     1861 accttatttg attcagcaag gctttttgca gcgtacaccg cgtgggcgta tggcgacgac
     1921 gcgggcgtgg aatcactttg gcataacgcc gccagaaatg ccgtaagtcg gattggtcgc
     1981 tcgcgccgca tccgacaaat gtgttcagcg atagattagc tggcctgctt tttcatcata
     2041 ctgataataa ataacagtgc tgcacatagc accaccgacg gacccgccgg cgtatcgtaa
     2101 aatgcggaaa aggttaaacc gcccgttacg gcaaccatcc ccaccaacac agcgacacct
     2161 gccatctgtt ccggcgtgcg ggcaaagcga cgtgcagtag cagcaggaat aatcagcagt
     2221 gaagtaataa tcaacgcgcc aacaaatttc atcgctacac caatcgtcaa tgccgtcacc
     2281 agcatcaaca acaatttcac gcgctgtaat ttcacaccat caacaaacgc cagatccggg
     2341 ctaatcgtca tcgacagcaa attgcgccat tgccagaaca aaatagccac cacgatgacc
     2401 acgccaatcg caatagcgat gagatcttct ggcgtcactg ccagcaaatc accgaacagg
     2461 taagccatca aatcaacacg aatgttagac atcagactaa cgaccaccag gcccagcgac
     2521 agggcactgt gcgccataat ccctaataac gtgtcaagcg ccagctgtgg acgtttctcc
     2581 agccatacca gaccgcccgc caggagcagc gtaacggcaa ttaccgcata gaatggattc
     2641 acgtccagca acaaaccaaa cgcgacgcca agtaatgagg catgagccag cgtatcaccg
     2701 aaataagaca tacgacgcca gactacaaac gaacccagcg gacccgcggc acaggcgagc
     2761 atgatcccgg ctaaccaacc gggaaataat aattcaatca tgagcgatca tttccccgac
     2821 gcaaaacaat tcgtccctgt aaatcgtgac gatgattatg atgatggcga tagataccca
     2881 gttgttcagc accacgagga ccaaacatag aaataaactc cggatgtagg gaaacaactt
     2941 ccggtgtgcc ggaacaacaa atgtggtgat tcagacacag cacttcatcg gtttttgcca
     3001 ttaccagatg cagatcgtga gagaccatta aaacgccaca atccagttcg cgacgcaact
     3061 ggtcaataag gtcatataac gccacctggc catttacatc cacgccttga gtgggttcat
     3121 ccagcactaa taattgcggt cgatttaaca atgctcgcgc taacagtaca cgctgtgttt
     3181 cgccaccaga gagcttttgc atcggtgcgt taatcagatg cccggcctgg acacgtttca
     3241 gtgcaggcaa aatatcttct ttatgtgtgc cagggcgtaa gcgtaaaaaa cggtttacgg
     3301 tcagtggcaa cgtggtgtcg agatacagct tctgcggtac atagccgatg cgtagttttc
     3361 cgttgcgctt gataacccct tcatcgggtg ttaccagccc gagcactacc cgtaccagtg
     3421 tcgacttacc tgcgccattt ggcccaagta aagtcaaaat ttttccaggt ttaagttcca
     3481 gcgacacatc agagaggacg cggcgttggc caaaagaaac tgagacattt tccagggaaa
     3541 ccagacttgt catgttaatt ttagtcttgc agtagtcatg agatgttata atatcacact
     3601 tctcatattc attacgatga ttggtcgcat tatgttacat aaaaaaacgc ttcttttcgc
     3661 agcattatcc gccgctctct ggggaggtgc aacacaggcc gcagatgccg ccgttgtcgc
     3721 ttcgcttaaa cccgttgggt tcatcgcttc tgccattgct gatggtgtaa cagaaacgga
     3781 ggttttactg cctgacggcg cttcagaaca tgattattca ctgcgtccat cggatgtaaa
     3841 acgcttacag aacgcggact tagtcgtttg ggttggcccg gagatggaag cgtttatgca
     3901 aaaaccggta agcaaattac taggagcgaa gcaggtaacg attgcgcagc ttgaagatgt
     3961 gaaactgcta ctgatgaaaa gtattcacgg cgatgatgat gatcacgacc acgcggaaaa
     4021 aagtgaagaa gatcaccatc acggcgattt caacatgcat ctttggcttt ccccagagat
     4081 agcgcgggct acagcggttg caatccatgg aaaattagtg gaacttatgc cgcaaagtcg
     4141 agccaaactt gacgccaacc tgaaggattt tgaggcacaa ttagcctcaa ccgaaacgca
     4201 ggttggtaac gagctcgcgc cgctcaaggg gaaaggttat ttcgtttttc acgatgctta
     4261 cggctatttc gaaaaacagt tcggactgac accgcttggt cattttaccg ttaaccctga
     4321 gattcaacct ggcgcgcagc gtttacatga aataagaaca cagttggttg agcaaaaagc
     4381 aacctgcgtt tttgctgagc cacagttcag gccagcggtc gttgagagcg tcgcacgagg
     4441 gacatccgtt cgtatgggaa cgttggatcc cttggggacg aatatcaaac tgggtaaaac
     4501 aagctattca gaattcctga gtcaattagc caaccagtat gcgagctgcc tgaaaggaga
     4561 ttaatgagga agtgattacg tgcaacagat agcccgctct gtcgccctgg cgtttaataa
     4621 tttaccgcga ccacaccgcg ttatgttggg gtcgctcacc gttcttactc tggccgtcgc
     4681 tgtctggcgg ccctatgttt atcaccgcga tgccacgcca attgtcaaaa ccattgagct
     4741 ggaacagaac gaaattcgtt cgctcttacc tgaagccagt gagccgattg atcaagctgc
     4801 acaagaagat gaagccattc cccaggacga actggatgac aaaatcgccg gtgaagcggg
     4861 cgtgcatgaa tatgttgttt ccactggcga tacgctaagc agcattctca atcagtatgg
     4921 tattgatatg ggtgatatca cccaactggc tgcggccgac aaagaattgc gtaacctgaa
     4981 aatcggtcaa caactctcct ggacattaac cgcggacggc gaactgcagc gcctcacctg
     5041 ggaagtgtct cgtcgtgaaa cccgaaccta tgaccgtact gccgctaacg gttttaaaat
     5101 gaccagcgaa atgcagcaag gagagtgggt taacaatctg ctgaaaggta ccgtcggagg
     5161 gagctttgtt gccagcgcca gaaacgccgg tttaaccagc gccgaagtga gcgcagtgat
     5221 taaagccatg cagtggcaaa tggatttccg caaactgaaa aaaggcgatg aatttgcggt
     5281 gttaatgtct cgagagatgc ttgatggtaa acgtgagcaa agccagctgc tgggcgtacg
     5341 tttgcgttca gaaggtaaag attattacgc aatccgcgct gaggatggca aattctacga
     5401 ccgtaacggt actggtctgg cgaaaggatt cttgcgattc ccgacggcga aacagttccg
     5461 tatctcgtct aactttaacc cgcgtcgtac taatccggtg accggtcgcg ttgcaccaca
     5521 cagaggtgtt gatttcgcca tgccgcaggg tacgccagtg ctttcagtgg gtgacggtga
     5581 agtggtggtt gccaaacgca gtggcgcagc aggttattat gtggctattc gtcatggtcg
     5641 cagctacacc acgcgttata tgcacttgcg caagattctg gtgaaaccgg gacagaaggt
     5701 gaaacgtggc gaccgtatcg cgctttccgg taataccgga cgttcaaccg ggccgcatct
     5761 gcactatgaa gtatggataa accagcaggc cgtaaacccg ctgacggcaa aactgccgcg
     5821 taccgaaggg ctgaccggct ccgatcgtcg cgaattcctg gcgcaggcca aagagattgt
     5881 gccgcagcta cggtttgatt aattaacatc cattcgcagc cggtacgcag tcagtaccgg
     5941 ctttttttat ttggtgcggg gcaagttgcg ccgctacact atcaccagat tgatttttgc
     6001 cttatccgaa actggaaaag catggaaacg aaaaaaaata atagcgaata cattcctgag
     6061 tttgataaat cctttcgcca cccgcgctac tggggagcat ggctgggcgt agcagcgatg
     6121 gtgggtatcg ctttaacgcc gccaaagttc cgtgatccca ttctggcacg gctgggacgt
     6181 tttgccggac gactgggaaa aagctcacgc cgtcgtgcgt taatcaatct gtcgctctgc
     6241 tttccagaac gtagtgaagc tgaacgcgaa gcgattgttg atgagatgtt tgccaccgcg
     6301 ccgcaagcga tggcaatgat ggctgagttg gcaatacgcg gaccggagaa aattcagccg
     6361 cgcgttgact ggcaagggct gcagatcatc gaagagatga ggcgtaataa cgagaaagtt
     6421 atctttctgg tgccgcacgg ttgggccgtc gatattcctg ccatgctgat ggcctcgcaa
     6481 gggcagaaaa tggcagcgat gttccataat cagggcaacc cggtttttga ttatgtctgg
     6541 aacacggtgc gtcgtcgctt tggcggtcgt ctgcatgcga gaaatgacgg tattaaacca
     6601 ttcatccagt cggtacgtca ggggtactgg ggatattatt tacccgatca ggatcatggc
     6661 ccagagcaca gcgaatttgt ggatttcttt gccacctata aagcgacgtt gcccgcgatt
     6721 ggtcgtttga tgaaagtgtg ccgtgcgcgc gttgtaccgc tgtttccgat ttatgatggc
     6781 aagacgcatc gtctgacgat tcaggtgcgc ccaccgatgg atgatctgtt agaggcggat
     6841 gatcatacga ttgcgcggcg gatgaatgaa gaagtcgaga tttttgttgg tccgcgacca
     6901 gaacaataca cctggatact aaaattgctg aaaactcgca gaccgggcga aatccaaccg
     6961 tataagcgta aagatcttta tcctatcaaa taaaaaaaag cctctcaaat tattgagagg
     7021 ctgtactcga taaaaaatct caatgagtgt tcccactatt ttgagttttt aggttagtac
     7081 gctattgagt taatcgtagc gtgataattt caaaaggttt gaactcaaga ttgcaatatt
     7141 gattgcaata aaaactgtca tctaacttat tttcttgaag atcgacatat tgaacgtagt
     7201 gataattaca tacccacgaa agcatggctg aaatttctaa tccatgactc tcatataatc
     7261 ttacgattat accgtcgccg tcttcagcta attttattgt ttcgatgata acgctgttag
     7321 tatcgatagc aaaaaatgat agtgaagggg gtaattcacc cgggtgcggt ttgacaggga
     7381 cgacctgtaa gggatgattc attatatagg cttgattaat aacaccaccc acacggtaat
     7441 ctccatgatg aggaaataag gagaatatga atttttgttt accaatatct gcaaaattat
     7501 taatcaggaa attatcataa ttgtctgtct taacaatttc cccaggttta tgctgcgaac
     7561 gcagcaaagt taattcaagc gtctggtctt tgacacgata gccatatttg ttttttgcta
     7621 ttaaagctat gccagtttct cgatcagaaa ggtcgaccca gtgatgtgct ggtatttcat
     7681 ctttggcaaa agcgaacgaa tcatcgctat gcgttggtct gtcaattaca ccgaactgaa
     7741 tttgacattg tgcaagagat gtttgtactg acaccgggaa tttgactttg agagaaacat
     7801 taggttcgtg ccaatcaata aaagtttgga catcaacgcg tggactgtcc tgtgtcaggg
     7861 taaatgcgaa gcgaagataa gaggaattgt agtgataaat cagcgtcatc gtagttttag
     7921 gcccgctgat tacagttgtc attttttcag cgagtaaaac atatgattcc ccatcacgat
     7981 aatttgaagc aaaatcccag gccgcgaaaa aacctgcatc ttcgtggtat gcacggatct
     8041 cactgtgcat attttcagta atgtattctt taccatatct tttatcatat agcgaaatta
     8101 aatcaccgtt ttctgaaaaa agaagtttaa tgtaattatt ttcaatactt cgagattctg
     8161 ccttcagacc atttacgatc ttattctttg gatcaatcac agcataacca taagagttta
     8221 ctcgtgcttt gagccagttg ttgtttatat tgatccattc gttacgagca aaacaggtgg
     8281 tattaaataa aatgtgcgga tctttataag aagaagtatc aattttactt aataaagtag
     8341 actgcgtatc agaaataatt ttctcggttt ttgcttctag tttaatatat tccttttcag
     8401 tttcaagata aactcttgaa atacatgatc cgggaaggat gtcatggaat tgcaaggtca
     8461 gcatctcttt ccatatttca tcaaactcac tgcgaagaat tgatgtcata ttattagtaa
     8521 tagttgtaaa aaattcagca tcatgtaatt tattttccat atttcgatta tgagctttag
     8581 ttgctgactc tgatgtaaag cacccttgat gagcctcgaa ataaagttca cctgaaataa
     8641 tgggcaagct ttcgcgaaaa gcgtcggcgt aagtgaagaa cttatcaaca cggctgaaat
     8701 caacatgagg taagccatca at
//
LOCUS       DADMJB010000168         8598 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.171, whole genome shotgun sequence.
ACCESSION   DADMJB010000168 DADMJB010000000
VERSION     DADMJB010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8598
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.171"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..183
                     /locus_tag="JN078_003505"
     CDS             <1..183
                     /locus_tag="JN078_003505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312842.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HAY9042577.1"
                     /translation="EAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQ
                     KGEVVGVDDQCKEHKE"
     gene            402..644
                     /locus_tag="JN078_003506"
     CDS             402..644
                     /locus_tag="JN078_003506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709694.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042578.1"
                     /translation="MNSLAGIDMGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVD
                     QYLINQSQTARTSVPGIWQGCEEDGVEYQRKLREEW"
     gene            complement(974..1903)
                     /gene="fdhE"
                     /locus_tag="JN078_003507"
     CDS             complement(974..1903)
                     /gene="fdhE"
                     /locus_tag="JN078_003507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory protein FdhE"
                     /protein_id="HAY9042579.1"
                     /translation="MSIRIIPQDELGSSEKRTADMIPPLLFPRLKNLYNRRAERLREL
                     AENNPLDDYLRFAALIAHAQEVVLYDHPLEMDLTARIKEASAQGKPPLDIHVLPRDKH
                     WQKLLMALIAELKPEMSGPALAVIENLEKASTQELEDMASALFASDFSSVSSDKAPFI
                     WAALSLYWAQMANLIPGKARAEYGEQRQYCPVCGSMPVSSMVQIGTTQGLRYLHCNLC
                     ETEWHVVRVKCSNCEQSGKLHYWSLDDEQAAIKAESCDDCGTYLKILYQEKEPKVEAV
                     ADDLASLVLDARMEQEGYARSSINPFLFPGEGE"
     gene            complement(1900..2535)
                     /gene="fdoI"
                     /locus_tag="JN078_003508"
     CDS             complement(1900..2535)
                     /gene="fdoI"
                     /locus_tag="JN078_003508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase cytochrome b556 subunit"
                     /protein_id="HAY9042580.1"
                     /translation="MKRRDTIVRYTAPERINHWITAFCFILAAVSGLGFLFPSFNWLM
                     QIMGTPQLARILHPFVGVVMFASFIIMFFRYWHHNLINRDDIFWAKNIRKIVVNEEVG
                     DTGRYNFGQKCVFWAAIIFLVLLLVSGVIIWRPYFAPAFSIPVIRFALMLHSFAAVAL
                     IVVIMVHIYAALWVKGTITAMVEGWVTSAWAKKHHPRWYREVRKTTEKKAE"
     gene            complement(2532..3434)
                     /gene="fdxH"
                     /locus_tag="JN078_003509"
     CDS             complement(2532..3434)
                     /gene="fdxH"
                     /locus_tag="JN078_003509"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit beta"
                     /protein_id="HAY9042581.1"
                     /translation="MAYQSQDIIRRSATNGLTPAPQARDFQEEVAKLIDVTTCIGCKA
                     CQVACSEWNDIRDTVGNNIGVYDNPNDLSAKSWTVMRFSEVEQNDKLEWLIRKDGCMH
                     CSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDIPRLNPEDNRVYKC
                     TLCVDRVVVGQEPACVKTCPTGAIHFGTKESMKTLASERVAELKTRGYDNAGLYDPAG
                     VGGTHVMYVLHHADKPNLYHGLPENPEISETVKFWKGIWKPLAAVGFAATFAASIFHY
                     VGVGPNRADEEENNLHEEKDEERK"
     gene            complement(3447..6497)
                     /gene="fdnG"
                     /locus_tag="JN078_003510"
     CDS             complement(3447..6497)
                     /gene="fdnG"
                     /locus_tag="JN078_003510"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(5910..5912),aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HAY9042582.1"
                     /translation="MQVSRRQFFKICAGGMAGTTAAALGFAPSVALAETRQYKLLRTR
                     ETRNTCTYCSVGCGLLMYSLGDGAKNAKASIFHIEGDPDHPVNRGALCPKGAGLVDFI
                     HSESRLKFPEYRAPGSDKWQQISWEEAFDRIAKLMKEDRDANYIAQNAEGVTVNRWLS
                     TGMLCASASSNETGYLTQKFSRALGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWV
                     DIKNANLVVVMGGNAAEAHPVGFRWAMEAKIHNGAKLIVIDPRFTRTAAVANYYAPIR
                     SGTDIAFLSGVLLYLLNNEKFNREYTEAYTNASLIVREDYGFEDGLFTGYDAEKRKYD
                     KSSWTYELDENGFAKRDTTLQHPRCVWNLLKQHVSRYTPDVVENICGTPKDAFLKVCE
                     YIAETSAHDKTASFLYALGWTQHSVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSN
                     IQGLTDLGLLSQSLPGYMTLPSEKQTDLQTYLTANTPKPLLEGQVNYWGNYPKFFVSM
                     MKAFFGDKATAENSWGFDWLPKWDKGYDVLQYFEMMKEGKVNGYICQGFNPVASFPNK
                     NKVIGCLSKLKFLVTIDPLNTETSNFWQNHGELNEVDSSKIQTEVFRLPSTCFAEENG
                     SIVNSGRWLQWHWKGADAPGIALTDGEILSGIFLRLRKMYAEQGGANPDQVLNMTWNY
                     AIPHEPKSEEVAMESNGKALADITDPATGAVIVKKGQQLSSFAQLRDDGTTSCGCWIF
                     AGSWTPEGNQMARRDNADPSGLGNTLGWAWAWPLNRRILYNRASADPQGNPWDPKRQL
                     LKWDGTKWTGWDIPDYSAAPPGSGVGPFIMQQEGMGRLFALDKMAEGPFPEHYEPFET
                     PLGTNPLHPNVISNPAARIFKDDAEALGKADKFPYVGTTYRLTEHFHYWTKHALLNAI
                     LQPEQFVEIGESLANKLGIAQGDTVKVSSNRGYIKAKAVVTKRIRTLKANGKDIDTIG
                     IPIHWGYEGVAKKGFIANTLTPFVGDANTQTPEFKSFLVNVEKV"
     gene            6691..7524
                     /gene="fdhD"
                     /locus_tag="JN078_003511"
     CDS             6691..7524
                     /gene="fdhD"
                     /locus_tag="JN078_003511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HAY9042583.1"
                     /translation="MKKTQRKEIENVTNITGVRQIELWRRDDLQHPRLDEVAEEVPVA
                     LVYNGISHVVMMASPKDLEYFALGFSLSEGIIESPRDIFGMDVVPSCNGLEVQIELSS
                     RRFMGLKERRRALAGRTGCGVCGVEQLNDIGKPVQPLPFTQTFDLNKLDDALRHLNDF
                     QPVGQLTGCTHAAAWMLPSGELVGGHEDVGRHVALDKLLGRRSQEGESWQQGAVLVSS
                     RASYEMVQKSAMCGVEILFAVSAATTLAVEVAERCNLTLVGFCKPGRATVYTHPQRLS
                     N"
     gene            7678..>8598
                     /locus_tag="JN078_003512"
     CDS             7678..>8598
                     /locus_tag="JN078_003512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiG family protein"
                     /protein_id="HAY9042584.1"
                     /translation="MKRNLLSSAIIVAIMALGLTGCDDKKAETETPPPANSQPAAPAP
                     EAPVAKAEAKPETPAQPVVDEQAVFDEKMDVYIKCYNKLQIPVQRSLARYVDWLKDFK
                     QGPTGEERTVYGIYGISESNLAECEKGVKSAVALTPALQPIDGVAVSYIDAAVALGNT
                     INEMDKYYTQENYKDDAFAKGKTLHQTFLKNLEAFEPVAESYHAAIQEINDKRQLAEL
                     KNIEEREGKIFHYYSLAVMISAKQINNLISQEKFDVDAAMKKVSELETLVAQAKEADK
                     GGMNFSFINSAGQYQLEAKKYVRRIRDKVPY"
BASE COUNT         2048 a         2176 c         2275 g         2099 t
ORIGIN      
        1 gaggcaatta aacggctgaa caagcttcgg ggctggcgta aggtttcacg atctgcaatt
       61 ttacgcgaag cggttgagca atatctggag cggcagcaat ttccggtgcg taaagcaaag
      121 ggaggcaggc aaaaggggga ggtagttggt gttgatgatc agtgtaagga gcataaggaa
      181 tgaaaaaaat ttttcattct tgaatataaa aaaacagatg cccttattct ggtattaata
      241 caaggctgtt ttacttgaac ttataataac tgcaactgtt acatcgtatc tggaaaacgc
      301 ctcgcaaaaa taaaaaatga tgcgtaaatg agctttcttt aaagattcgg caagggtact
      361 tttctctcca tagattcaaa aatgatattg gcgagatatt tatgaactct ctggcaggta
      421 tagatatggg cagaatttta ctcgatttat cgaatgaggt gattaagcaa cttgatgatc
      481 tcgaggtgca gcgtaatctt cctcgtgcgg acctattaag ggaagcggta gatcaatacc
      541 tgataaatca atcgcaaaca gcaagaacca gtgttcctgg catctggcaa gggtgtgagg
      601 aagatggtgt cgaatatcag cgtaagctgc gcgaggaatg gtaatgggaa aaaatgatgt
      661 caatcagatt gctgacaacg tgcgcgttgt tcatgccgga tgcggcgtga acgccttatc
      721 cggcctacaa agtcatgcaa attcaatata ttgaagttta ttggtaggcc tgataagcgc
      781 agcgcatcag gcaatcatac gcttgtcatc agtgacatac ccataacctt atcgatgtgt
      841 tggagggaag aacgaggcaa acagacaatt gcggcatgat cttgaatggg taacgcggaa
      901 tacgagagat ggtgtcgtca caccctatga gctgtaatcc gggcgaccag cgccacccgg
      961 aaaacgtcag agattactcc ccttcacccg gaaacaggaa cgggttgatg gaactgcggg
     1021 catagccttc ttgctccatt cgcgcgtcca gtaccagaga agcgaggtca tctgccacgg
     1081 cttcaacttt cggttctttt tcctgataaa gaatcttcag gtaagtgccg cagtcatcgc
     1141 agctttcggc tttaatcgcg gcctgttcgt catccagcga ccagtaatgc agtttgccgc
     1201 tctgttcaca gttgctgcat tttacgcgca ctacgtgcca ttcggtttca cacaggttgc
     1261 agtgcaggta acgcagaccc tgagtggtgc caatttgcac catgctggac accggcatag
     1321 aaccacaaac cgggcaatat tgacgttgct cgccgtattc agcgcgggct ttgccgggga
     1381 tcagattggc catctgcgcc cagtagagcg acagtgcagc ccagataaac ggcgctttat
     1441 cgctgctgac ggatgagaaa tcagaggcaa acagtgcgct ggccatatct tccagctcct
     1501 gagtcgatgc cttctccaga ttctcaatca ctgccagcgc cgggccgctc atttcaggtt
     1561 tcagctcagc aatcagcgcc atcagcagct tttgccagtg cttatcacgc ggcagaacgt
     1621 gaatatccag cgggggcttg ccctgtgcgc tggcttcttt aatgcgcgcg gtcagatcca
     1681 tctccagcgg atggtcgtac agcaccactt cctgggcgtg ggcgataagc gcagcaaagc
     1741 gcaggtaatc atccagcgga ttattttctg ccagctcgcg cagacgctcg gcgcggcggt
     1801 tgtataaatt cttgagccga gggaacaata acggcggaat catatccgcc gtacgtttct
     1861 cgctcgaacc cagctcatct tgcgggatta tgcgaatact cattcagctt tcttttccgt
     1921 tgtcttgcgg acctcacggt accagcgcgg gtgatgtttc ttcgcccagg cgctggtaac
     1981 ccatccttcc accatggcgg taatcgtgcc tttcacccaa agggcggcgt agatatgcac
     2041 catgataacc acaattaacg ccactgcggc aaatgaatgc agcattaacg cgaatcggat
     2101 caccgggatt gagaaagcag gcgcaaaata aggacgccag ataatcacgc cgctcaccag
     2161 cagcagaacc aggaaaataa tcgccgccca gaaaacgcat ttctgaccga agttataacg
     2221 cccggtgtca cctacttcct cgttgacgac gatcttacga atattcttcg cccaaaagat
     2281 atcatcccga ttgattaggt tgtgatgcca gtaacggaaa aacatgatga tgaacgaggc
     2341 aaacataacc acgccgacaa acgggtgcag aattcgcgcc agctgcggtg tgcccatgat
     2401 ttgcatcaac cagttgaagg acgggaacaa aaagcccagc ccgctcaccg ccgctaggat
     2461 gaagcagaag gcggtgatcc agtggttgat acgttccggc gcggtgtagc gcacgatggt
     2521 gtcacgtcgt ttcatttgcg ctcctcgtct ttctcttcgt gcagattatt ctcttcctca
     2581 tccgcacggt tcggaccgac acccacgtag tggaagatac tggctgcgaa ggtagccgca
     2641 aagccaacag ctgcgagcgg tttccagatg cctttccaga atttcacggt ttcgctgatt
     2701 tccgggttct ccggcaagcc atgatacaga tttggcttgt cagcatggtg cagcacgtac
     2761 ataacgtgtg taccaccgac gcctgccgga tcgtacaggc ccgcattgtc gtaaccgcgg
     2821 gttttcagct ccgccacgcg ctcgctcgcc agcgttttca tcgactcttt cgtaccgaag
     2881 tgaatcgcgc ccgttgggca ggtcttcacg caggctggtt cttgcccaac caccacgcgg
     2941 tcaacgcaca gcgtacattt gtagacgcgg ttgtcttccg ggttgaggcg cggaatgtcg
     3001 aacggacagc ccgcaatgca ataaccgcag ccaatgcact gctcggactg gaagtcgacg
     3061 ataccgttgg catactgaat aattgcacct tccgccgggc acgctttcag acagcctgga
     3121 tcggaacagt gcatacagcc gtctttgcgg atcagccatt ccagtttgtc gttctgctcc
     3181 acttccgaga agcgcatcac cgtccacgat ttggcactta aatcattggg gttgtcgtac
     3241 accccaatgt tattgccgac ggtatcgcga atgtcgttcc actctgaaca cgccacctga
     3301 caggctttac agccgataca ggtggtgacg tcgatgagtt tcgccacttc ttcctggaag
     3361 tcccgcgcct gaggcgcggg ggtcagaccg ttagtcgcgg aacgacgaat gatatcttga
     3421 gattgataag ccatatgtcg tctccgttac accttttcca cattcacaag gaaggactta
     3481 aactccggcg tctgcgtgtt cgcatcacca acgaatggcg ttaaagtatt ggcaataaag
     3541 ccttttttag ctacgccttc atagccccag tgaatcggaa taccgatggt atcgatatct
     3601 ttgccgttcg ctttcagcgt gcgaatacgt ttggtcacca ccgctttggc tttgatatag
     3661 ccacggttgg aggagacttt cacggtatcg ccctgggcaa tgccaagttt attcgccagc
     3721 gactccccga tttccacaaa ctgctctggc tgcaaaatcg cgttcaacag cgcgtgtttg
     3781 gtccagtagt ggaagtgctc ggtcagacga taggtggttc cgacatacgg gaacttatcg
     3841 gctttaccca atgcttcggc gtcgtcttta aagatacgtg cagccgggtt cgagataacg
     3901 tttggatgca gcgggttagt tcccagcggc gtttcaaacg gctcgtagtg ttccgggaac
     3961 ggaccttccg ccatcttatc gagggcaaac agacgcccca tgccttcctg ctgcatgata
     4021 aacggcccga cgccgctacc cggaggcgct gcgctgtagt ccggaatatc ccagccggtc
     4081 cacttagtgc cgtcccattt cagcaactga cgcttcggat cccacgggtt accctgcgga
     4141 tctgcggagg cgcggttata cagaatgcgg cggttaagcg gccatgccca tgcccagccc
     4201 agcgtgttac cgaggccaga cggatcggcg ttatcacgac gcgccatctg gttgccttcc
     4261 ggcgtccagc taccggcgaa aatccagcag ccacaggagg ttgtaccgtc atcgcgcaat
     4321 tgggcgaacg agctaagttg ttggcctttc ttgacgataa ccgcaccggt tgccggatcg
     4381 gtaatatcgg ccagcgcctt accgttgctc tccatcgcta cttcttccga cttcggctca
     4441 tgcggaatgg cgtagttcca ggtcatgttc agcacctgat ccgggttcgc gccaccctgt
     4501 tcggcataca tcttgcgcaa gcgcaggaag ataccggaga ggatctcacc gtcagtcagc
     4561 gcaatccccg gggcgtccgc acctttccag tgccactgca accagcgacc tgagttaacg
     4621 attgaaccgt tctcttctgc gaagcaggtc gatggcagac ggaacacttc ggtctggatc
     4681 ttcgacgagt caacttcgtt cagctcaccg tggttctgcc agaagttaga ggtttcagtg
     4741 ttcagcgggt cgatggtgac gaggaacttc agtttcgaca gacaaccgat cactttgttt
     4801 ttgttcggga atgaggcaac agggttaaaa ccctggcaga tatagccatt gaccttgccc
     4861 tctttcatca tctcgaagta ttgcaggacg tcgtagcctt tatcccactt cggcaaccag
     4921 tcaaagcccc agctattttc cgccgtcgct ttatcaccaa agaaggcctt catcatagag
     4981 acgaagaatt tcgggtagtt gccccagtag tttacctggc cttccagcag cggttttggc
     5041 gtgttggcgg taaggtaggt ttgcagatcg gtctgcttct cgcttggcag cgtcatgtaa
     5101 cctggcaggc tctgcgacag cagccccagg tccgtcagcc cctgaatatt ggagtgaccg
     5161 cgcagggcgt taacgccgcc gcctgccatc cccatattgc cgagcagcag ctggatcatc
     5221 gccatcgtac gaatgttttg cgcaccaacg gagtgttgcg tccagccgag ggcatacagg
     5281 aacgaggcag ttttatcgtg agcactggtt tctgcgatgt attcgcagac tttcaggaac
     5341 gcgtcttttg gcgtaccaca gatgttttca accacatctg gcgtgtagcg ggaaacgtgc
     5401 tgtttcagca agttccacac gcagcgcgga tgttgcagcg tggtatcgcg tttggcgaag
     5461 ccgttttcgt ccagttcgta agtccaggag gatttatcgt acttgcgttt ttccgcgtca
     5521 tagccggtga aaaggccatc ttcaaagccg taatcctcac gcacgatcag gctggcgttg
     5581 gtataggctt cggtgtattc gcggttgaat ttttcattgt tcagcaggta cagcaatacg
     5641 cctgacagga aagcaatgtc agtaccggaa cgaatagggg catagtagtt agctaccgcc
     5701 gccgtacgcg taaagcgagg atcgatcaca atcagcttcg cgccgttgtg aattttggct
     5761 tccatcgccc agcggaaccc gaccgggtga gcttcagcgg cgttaccgcc catcaccacg
     5821 acgaggttgg cgttcttgat gtcgacccag tggttggtca tcgcaccgcg accaaatgtt
     5881 ggagcaagac ttgctaccgt tggtccgtgt cagacacgcg cctggttgtc gaccgcgagc
     5941 atacccagcg cgcgggagaa tttttgcgtt aaatagccgg tttcgttact cgacgcggaa
     6001 gcacacagca tcccggtgga gagccagcgg ttaacagtca cgccttcggc gttttgcgca
     6061 atgtagttag catcgcggtc ttctttcatc agtttggcga tgcgatcaaa cgcctcttcc
     6121 caactgattt gctgccattt atcagaacct ggcgcacggt attccggaaa cttcagacgg
     6181 ctttcggagt ggatgaaatc caccaggcca gcgcctttcg gacaaagtgc accgcggttg
     6241 accgggtgat ccggatcgcc ttcgatatgg aagatagatg ctttggcgtt ttttgctccg
     6301 tcaccgaggc tgtacatcaa cagcccacag cctacggaac aataggtgca ggtattacgg
     6361 gtttcgcggg tgcgcagcag tttatactgc cgggtttccg cgagtgctac gctgggtgca
     6421 aaacctagtg ccgctgccgt ggtgcctgcc ataccgccag cgcagatctt aaagaactgc
     6481 cttctgctga cctgcatgga ttgctccttg tttcgacatt gtcacgtccc atttacattc
     6541 gcttgctgcg tgtgcaggga gtgggagtta tttttctttg cggaaggggc cgcaaaggtc
     6601 cagaattggc tcgatttccc tccatccagg aagggtttgt aacagaatac cataatgttg
     6661 gtgtgtgtgt tcttatctgg ttaagagaaa gtgaaaaaaa cacagcgaaa agaaatcgaa
     6721 aatgtgacaa atatcacagg tgttcgtcaa attgagttat ggcggcgtga tgatttacaa
     6781 cacccacggt tagatgaggt cgcggaagaa gttcccgttg cgctggtcta caacggcatt
     6841 tcgcatgtgg tgatgatggc gtcgcccaaa gaccttgagt actttgcgct cggtttttcg
     6901 ctttccgagg ggattatcga aagtccgcgc gatatcttcg gcatggatgt cgttccttcc
     6961 tgtaatggtc ttgaagtaca aattgagctt tccagccgcc gctttatggg gttgaaggag
     7021 cgccgccggg cgctggcggg acgtacgggc tgtggcgtat gcggcgtgga gcaacttaat
     7081 gacatcggaa aaccggtgca gccgctaccg ttcacccaga cgtttgatct caacaaactg
     7141 gatgatgcat tacgtcatct caacgatttt cagccagtgg ggcaactgac tggttgtact
     7201 cacgccgctg cctggatgtt gccatctggc gaactggtcg gcgggcatga agacgtgggg
     7261 cgccatgtgg cgctggacaa actgttaggc cgccggtcac aagaagggga aagctggcag
     7321 caaggtgcgg tactggtttc cagtcgtgcc agttatgaaa tggtgcaaaa gtcggcgatg
     7381 tgcggcgtag agattttgtt tgcggtgtct gccgcgacca cgcttgctgt agaagtggct
     7441 gagcgctgta atctgacact ggtaggtttt tgtaaaccgg gtcgggcaac ggtttatacc
     7501 catccgcagc gtttgagcaa ttaattaaaa taagtcctgc gatatatatt aaattgcagg
     7561 acttattcat ttcgtgaatt ttattatttt tatttataaa taaaacgcgt gtagtggcgt
     7621 tttctttttt catttattat gttcactctc ttatctatat atttataagg caattaaatg
     7681 aaaaggaatt tattatcttc cgctattata gtcgccatca tggccctcgg tctgacgggt
     7741 tgtgatgata aaaaagccga aacagaaacg cccccgcctg ccaatagtca acctgccgca
     7801 ccagctcctg aagctcccgt tgcaaaagca gaagctaaac ctgaaacacc tgcgcaaccg
     7861 gtggtcgatg aacaagcggt tttcgacgaa aaaatggatg tctatatcaa gtgctataac
     7921 aagttacaga tccctgtaca gcgcagtctg gcgcgttatg ttgactggct gaaagatttt
     7981 aaacaggggc ctaccggtga agagcgtact gtttatggca tctacggcat tagtgaatcc
     8041 aacctcgctg agtgtgaaaa aggcgtaaaa agtgctgtgg cgttaacgcc tgcgctgcaa
     8101 ccaattgatg gcgtggcggt gagttatatc gatgctgccg tggcgttggg taataccatt
     8161 aacgaaatgg ataaatatta cacccaggaa aattataaag acgatgcgtt tgcgaaaggg
     8221 aaaacgctgc accagacatt cttaaaaaat ctggaagcct ttgaacctgt agcagaatct
     8281 tatcatgcgg cgattcagga aattaacgat aagcgccagc ttgcggaact gaaaaatatt
     8341 gaagaaagag aagggaaaat attccactac tattctctgg cagtcatgat ttcagcgaaa
     8401 caaattaata acctgatatc gcaagagaag tttgatgttg atgcggcaat gaagaaagtg
     8461 tctgaactgg aaacgctggt ggcgcaggcc aaagaagcgg ataaaggcgg catgaatttc
     8521 tcgtttatta attcggcagg ccagtatcaa ctcgaggcta aaaaatacgt tcgccgcatc
     8581 agagataaag tcccgtac
//
LOCUS       DADMJB010000169         8456 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.172, whole genome shotgun sequence.
ACCESSION   DADMJB010000169 DADMJB010000000
VERSION     DADMJB010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8456
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.172"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..202
                     /gene="csgC"
                     /locus_tag="JN078_003513"
     CDS             <1..202
                     /gene="csgC"
                     /locus_tag="JN078_003513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706954.2"
                     /note="involved in autoagglutination of curliated cells;
                     not involved in production of curli fibers; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="curli assembly protein CsgC"
                     /protein_id="HAY9042585.1"
                     /translation="SLREGGSGQSQTKQEKTLSLPANQPIALTKLSLNISPEDRVKIV
                     VTVSDGQALHLSQQWPPSSEKS"
     gene            323..634
                     /locus_tag="JN078_003514"
     CDS             323..634
                     /locus_tag="JN078_003514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HAY9042586.1"
                     /translation="MFRPFLNSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDV
                     STQSSPVEMNCPQNGSVPGKTYSSKALMSGNVKNAQVASVKVQYIDKQKKLAVMNIEY
                     N"
     gene            730..1263
                     /gene="ymdB"
                     /locus_tag="JN078_003515"
     CDS             730..1263
                     /gene="ymdB"
                     /locus_tag="JN078_003515"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetyl-ADP-ribose deacetylase"
                     /protein_id="HAY9042587.1"
                     /translation="MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGP
                     ALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYL
                     NSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYD
                     EENAHLYERLLTQQGDE"
     gene            1205..2686
                     /locus_tag="JN078_003516"
     CDS             1205..2686
                     /locus_tag="JN078_003516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706957.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="HAY9042588.1"
                     /translation="MMKKTPTSTKDSLPNKEMNDLPRLASAVLPLCSQHPGQCGLFPL
                     EKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLDDN
                     NTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVV
                     TLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDV
                     PEGEMADRIELPASWHNDAMTHRYLRQMESSPFINHLVDGTLPLIWAKTRLLSDDPAK
                     GEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTN
                     SLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKT
                     FSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQYDAAWQLRLDR
                     WGRINWVDRHAKKEIILKKEPATSFWKRVMVRLASILPVEWLL"
     gene            complement(2694..3851)
                     /gene="mdoC"
                     /locus_tag="JN078_003517"
     CDS             complement(2694..3851)
                     /gene="mdoC"
                     /locus_tag="JN078_003517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706958.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis protein MdoC"
                     /protein_id="HAY9042589.1"
                     /translation="MNPVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEP
                     SLWLTLFNDFIHSFRMLVFFVISGYFSYMLFLRYPLKKWWKVRVERVGIPMLTAIPLL
                     TLPQFIMLQYVKGKAESWPGLSLYDKYNTLAWELISHLWFLLVLVVMTTLCVWIFKRI
                     RNNLENSDKTNKKFSMVKLSVIFLCLGIGYAVIRRTIFIVYPPILSNGMFNFIVMQTL
                     FYLPFFILGALAFIFPHLKALFTTPSRGCTLAAALAFVAYLLNQRYGSGDAWMYETES
                     VITMVLGLWMVNVVFSFGHRLLNFQSARVTYFVNASLFIYLVHHPLTLFFGAYITPHI
                     TSNWLGFLCGLIFVVGIAIILYEIHLRIPLLKFLFSGKPVVKRENDKAPAR"
     gene            4245..5780
                     /gene="mdoG"
                     /locus_tag="JN078_003518"
     CDS             4245..5780
                     /gene="mdoG"
                     /locus_tag="JN078_003518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis protein MdoG"
                     /protein_id="HAY9042590.1"
                     /translation="MMKMRWLSAAVMLTLYTSSSWAFSIDDVAKQAQSLAGKGYEAPK
                     SNLPSVFRDMKYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATA
                     VKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVI
                     GAGQVYGLSARGLAIDTALPSGEEFPRFKEFWIERPKPTDKRLTIYALLDSPRATGAY
                     KFVVMPGRDTVVDVQSKIYLRDKVGKLGGAPLTSMFLFGPNQPSPANNYRPELHDSNG
                     LSIHAGNGEWIWRPLNNPKHLAVSSFSMENPQGFGLLQRGRDFSRFEDLDDRYDLRPS
                     AWVTPKGEWGKGSVELVEIPTNDETNDNIVAYWTPDQLPEPGKEMNFKYTITFSRDED
                     KLHAPDNAWVQQTRRSTGDVKQSNLIRQPDGTIAFVVDFTGAEMKKLPEDTPVTAQTS
                     IGDNGEIVESTVRYNPVTKGWRLVMRVKVKDAKKTTEMRAALVNADQTLSETWSYQLP
                     ANE"
     gene            5773..8316
                     /gene="mdoH"
                     /locus_tag="JN078_003519"
     CDS             5773..8316
                     /gene="mdoH"
                     /locus_tag="JN078_003519"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis glucosyltransferase MdoH"
                     /protein_id="HAY9042591.1"
                     /translation="MNKTTEYIDAMPIAASEKAALPKTDIRAVHQALDAEHRTWARED
                     DSPQGSVKARLEQAWPDSLADGQLIKDDEGRDQLKAMPEAKRSSMFPDPWRTNPVGRF
                     WDRLRGRDVTPRYLARLTKEEQESEQKWRTVGTIRRYILLILTLAQTVVATWYMKTIL
                     PYQGWALINPMDMVGQDLWVSFMQLLPYMLQTGILILFAVLFCWVSAGFWTALMGFLQ
                     LLIGRDKYSISASTVGDEPLNPEHRTALIMPICNEDVNRVFAGLRATWESVKATGNAK
                     HFDVYILSDSYNPDICVAEQKAWMELIAEVGGEGQIFYRRRRRRVKRKSGNIDDFCRR
                     WGSQYSYMVVLDADSVMTGDCLCGLVRLMEANPNAGIIQSSPKASGMDTLYARCQQFA
                     TRVYGPLFTAGLHFWQLGESHYWGHNAIIRVKPFIEHCALAPLPGEGSFAGSILSHDF
                     VEAALMRRAGWGVWIAYDLPGSYEELPPNLLDELKRDRRWCHGNLMNFRLFLVKGMHP
                     VHRAVFLTGVMSYLSAPLWFMFLALSTALQVVHALTEPQYFLQPRQLFPVWPQWRPEL
                     AIALFASTMVLLFLPKLLSILLIWCKGTKEYGGFWRVTLSLLLEVLFSVLLAPVRMLF
                     HTVFVVSAFLGWEVVWNSPQRDDDSTSWGEAFKRHGSQLLLGLVWAVGMAWLDLRFLF
                     WLAPIVFSLILSPFVSVISSRATVGLRTKHWKLFLIPEEYSPPQVLVDTDRFLEMNRQ
                     RSLDDGFMHAVFNPSFNALATAMATARHRASKVLEIARDRHVEQALNETPEKLNRDRR
                     LVLLSDPVTMARLHFRVWNSPERYSSWVSYYEGIKLNPLALRKPDAASQ"
BASE COUNT         2134 a         2005 c         2212 g         2105 t
ORIGIN      
        1 gtccctgcgc gaaggcggtt cagggcaaag tcagacgaag caagaaaaga ccctctcatt
       61 gcctgctaat caacctattg ctttgacgaa gttgagttta aatatttccc cggaagatcg
      121 ggtgaaaata gttgttactg tttctgatgg acaggcactt catttatcac aacaatggcc
      181 gccctcttca gaaaagtctt aatttgttga aatgtcgagc ataagatgaa tctggagaga
      241 atggtctgct gcgaatcagc caacctgaaa gtatggataa cacaaccctc aaggatgact
      301 aatcattgag gaaatagaat aaatgttcag acctttttta aactctctta tgctcggcag
      361 tttgtttttt ccttttattg ccatcgcagg aagcaccgcg caagggggcg tgatccattt
      421 ttatggccaa attgtggaac cggcatgtga cgtcagcacc cagtcatcac ccgtagaaat
      481 gaactgccca cagaatggtt ctgttccggg aaaaacctat tccagcaaag cgttaatgag
      541 cggcaatgtc aaaaacgcgc aagtagcctc agtaaaagtg cagtatattg ataaacagaa
      601 aaagctggct gtaatgaaca tcgaatataa ctaagtttct gaacaacgca cgttgctgag
      661 tagaaaaatg cgatttaacc aaaaagcctg ctgtacactt aagaaacaag aaggtgttaa
      721 ggaggcgtta tgaaaacgcg tattcatgtt gtgcagggtg atattaccaa actggccgtt
      781 gatgtgattg tgaatgcggc taatccgtca ttaatgggag gcggcggcgt cgatggggcc
      841 attcatcgcg cagcgggtcc ggccctgctg gatgcctgtt taaaagtcag gcaacagcag
      901 ggcgattgcc ctacggggca tgccgttatt acgcttgcag gcgatcttcc cgctaaagcc
      961 gtagtacaca ccgtcgggcc agtctggcgt ggtggtgaac aaaacgaaga ccagcttttg
     1021 caggatgcct atctcaatag tctgcgactg gtggcggcaa acagctatac gtcagtggca
     1081 tttcctgcaa tcagtactgg ggtttatggt taccctcgtg cggcagcggc tgaaatcgca
     1141 gtaaaaaccg tttcagaatt tattacccgt cacgctttac ccgaacaggt atactttgtc
     1201 tgttatgatg aagaaaacgc ccacctctac gaaagactcc ttacccaaca aggagatgaa
     1261 tgatttgccc cggctggcga gcgcggtgct gccactgtgt tcgcaacatc ccggtcagtg
     1321 tggtcttttc cctctggaga aaagtctgga tgcgtttgcc gcccggtatc gtctggccga
     1381 aatggcagag catacgctgg atgttcagta ttacatctgg caggacgata tgtcgggtcg
     1441 gttactgttt tccgccctgt tagccgcagc aaagcgtggc gttcgcgtcc gtttgttgct
     1501 ggacgacaac aatacgcccg gacttgacga tattttacgc ttgcttgaca gccatccccg
     1561 cattgaagtc cggcttttta atcctttctc gtttcgcttg ctgcgtccgc ttggttatat
     1621 caccgacttt tcccgtctca atcgccgtat gcacaataaa agtttcactg tcgatggcgt
     1681 ggttaccttg gtgggaggac gaaatattgg tgatgcctat tttggggcag gggaagagcc
     1741 acttttttcg gatttagatg ttatggcaat aggacccgtg gtagaggacg ttgccgatga
     1801 tttcgcccgc tactggtatt gcaaatcggt ttcaccctta cagcaggtgc tggatgtccc
     1861 ggaaggtgaa atggcggatc gcatcgagtt acccgcctcc tggcataacg atgccatgac
     1921 gcatcgttac ttacgccaaa tggaatccag tccgtttata aatcatctgg ttgatggaac
     1981 gttgccgctt atctgggcga aaacacgttt attaagtgat gatccggcga aaggggaggg
     2041 caaggcaaaa cggcattcac tgttaccgca gcgcctgttc gatatcatgg gctcacccag
     2101 tgaacgcatc gatattatct cttcctattt tgtaccgaca cgcgcaggtg tggcgcaact
     2161 cttacggatg gtgagaaaag gggtaaagat tgcgatccta accaattctc ttgccgctaa
     2221 cgatgttgct gtcgtccatg ccggatacgc gcgctggcgc aaaaaattgc tccgctatgg
     2281 cgtggaatta tatgaactca agccgacgcg tgaacaaagt agtacgttac acgatcgcgg
     2341 cataaccggt aattccggtg ccagcctgca tgctaaaacc tttagcatcg atggtaaaac
     2401 ggtgtttatc ggctctttca atttcgatcc acgttcgaca ttgctcaata ctgaaatggg
     2461 cttcgtgata gagagcgaaa cgctggcaca gttaattgat aaacgcttta tacagagcca
     2521 gtatgatgcg gcctggcagc tccgtctgga caggtgggga cggatcaact gggttgatcg
     2581 tcatgcaaag aaagagatta ttctcaaaaa agaacccgcc accagtttct ggaagcgggt
     2641 tatggtcaga ctggcgtcga tattgcccgt ggaatggtta ttgtaaatgt ggcttaacgg
     2701 gctggtgctt tatcgttctc acgcttaaca accggtttac cagaaaacaa aaacttcagt
     2761 aacgggatgc gtaaatgaat ttcatacaga attatcgcaa tccctactac gaatatcagg
     2821 ccacagagaa aaccaagcca gttggaggtg atgtgcggtg taatgtatgc gccgaaaaac
     2881 agcgttaacg ggtggtgaac cagatagata aatagcgatg cgttaacaaa gtaagtcacc
     2941 cgcgctgact ggaagttaag caaacggtgg ccaaaggaga agaccacatt caccatccac
     3001 agaccgagga ccatggtgat caccgactcg gtttcgtaca tccaggcatc gccactgcca
     3061 tagcgttggt tgagtaaata agcgacaaat gccaatgctg ctgcaagggt acagccacga
     3121 gacggcgtgg taaacaaggc tttaagatga gggaaaatga aagccagtgc accgaggata
     3181 aagaacggca aataaaatag cgtttgcatg acaataaaat tgaacatgcc attactcaga
     3241 atgggcggat acacaataaa aatcgttctt cttattaccg catagccgat gccgaggcat
     3301 aaaaaaatca ccgatagttt taccatcgag aattttttat tcgttttatc agaattttct
     3361 aaattatttc tgatgcgttt aaatatccat acgcacagcg tcgtcatgac tactaacacc
     3421 agtaaaaacc acaggtgtga tattaattcc caggccaacg tattatattt gtcatacaat
     3481 gacagcccag gccaactttc cgctttccct ttgacgtatt gcagcataat aaattgcggc
     3541 aatgtcagta aggggatggc tgttaacatc gggataccta cacgttcgac acgtactttc
     3601 caccattttt tcaagggata gcgtaaaaaa agcatgtagg aaaagtagcc ggatataacg
     3661 aaaaatacca gcatgcggaa cgagtggatg aagtcattaa aaagggtcag ccacaatgac
     3721 ggttcggcgc tattcacatg ccatgtatgg ctcgaataga ttaaagaaat atgaaaaggg
     3781 atccctaaca acatcagcca ggcgcggatg gagtcgagga aatattcacg ttgcgcgggt
     3841 actggattca tatatggtta actaatctcg gatttttcgt cttatccctg tcgggttatg
     3901 cctttaggct tgttgccata gcgacaccga cctgaccgcg ccaggcgcag gcttcaaggt
     3961 ttttatgcat agcataatcg ctaccactaa ccagaatgga agcgtctgta agacggttga
     4021 taaataaaat tgctggcaaa ccctacacga agtcgatgct tctgtcttta ggagaagcac
     4081 ggaaagtgaa aacggttgca atcaggtgct taatccatga gccagcgtgc tgaacgatac
     4141 cgggattctg ttgtcggaat ggctggttat ccattaaaat agatcggatc gatataagca
     4201 cacaaagggg gaagtgctta ctaattatga aacataaact acaaatgatg aaaatgcgtt
     4261 ggttgagtgc tgcagtaatg ttaaccctgt atacatcttc aagctgggct ttcagtattg
     4321 atgatgtcgc aaagcaagct caatccttag ccgggaaagg ctatgaggcg cccaaaagca
     4381 acttgccctc cgttttccgc gatatgaaat acgcggacta tcagcagatc cagtttaatc
     4441 atgacaaagc gtactggaac aatctgaaga ccccattcaa actcgagttc taccatcagg
     4501 gtatgtactt cgataccccg gtcaaaataa atgaagtgac tgccaccgca gtcaaacgaa
     4561 tcaaatacag cccggattat ttcactttcg gcgatgttca gcatgacaaa gacacggtaa
     4621 aagaccttgg ttttgccggt tttaaagtgc tttacccgat caacagcaaa gataaaaacg
     4681 atgaaatcgt cagcatgctc ggggccagct atttccgcgt gattggtgca ggtcaggttt
     4741 atggcctttc tgcccgcggc ctggcaattg ataccgcctt gccatcgggt gaagaatttc
     4801 cacgcttcaa agagttctgg atcgagcgtc caaaaccgac tgataaacgt ttaaccattt
     4861 atgcattgct tgactcgccg cgcgcgacag gtgcttacaa attcgtggtt atgccagggc
     4921 gtgacacggt tgtggatgtg cagtcgaaaa tctatctgcg cgataaagtc ggcaaactgg
     4981 ggggtgcacc gttaaccagt atgttcctgt ttgggccgaa ccaaccgtcg cctgcaaata
     5041 actatcgtcc ggagttgcac gactctaacg gtctctctat ccatgccggt aatggcgaat
     5101 ggatctggcg tccgttgaat aacccgaaac atttagcggt tagcagcttc tcgatggaga
     5161 acccgcaagg cttcggtctg ttgcagcgcg gtcgtgattt ctcccgcttt gaagatctcg
     5221 atgatcgtta cgatcttcgt ccaagcgcat gggtgactcc gaaaggggag tggggtaaag
     5281 gcagcgttga gctggtggaa attccaacca acgatgaaac caacgataac atcgtcgctt
     5341 actggacgcc ggatcagctg ccggagccgg gtaaagagat gaactttaaa tacaccatca
     5401 ccttcagccg tgatgaagac aaactgcatg cgccagataa cgcatgggtg caacaaacgc
     5461 gtcgttcaac gggggatgtg aagcagtcga acctgattcg ccagcctgac ggtactatcg
     5521 cctttgtggt cgattttacc ggcgcagaga tgaaaaaact gccagaggat accccggtca
     5581 cagcgcaaac cagcattggt gataatggtg agatagttga aagcacggtg cgctataacc
     5641 cggttaccaa aggctggcgt ctggtgatgc gtgtgaaagt gaaagatgcc aagaaaacca
     5701 ctgaaatgcg tgctgcgctg gtgaatgccg atcagacgtt gagtgaaacc tggagctacc
     5761 agttacctgc caatgaataa gacaactgag tacattgacg caatgcccat cgccgcaagc
     5821 gagaaagcgg cattgccgaa gactgatatc cgcgccgtac atcaggcgct ggatgccgaa
     5881 caccgcacct gggcgcggga ggatgattcc ccgcaaggct cggtaaaggc gcgtctggaa
     5941 caagcctggc cagattcact tgctgatgga cagttaatta aagacgacga agggcgcgat
     6001 cagctgaagg cgatgccaga agcaaaacgc tcctcgatgt ttcccgaccc gtggcgtacc
     6061 aacccggtag gccgtttctg ggatcgcctg cgtggacgcg atgtcacgcc gcgctatctg
     6121 gctcgtttga ccaaagaaga gcaggagagc gagcaaaagt ggcgtaccgt cggtaccatc
     6181 cgccgttaca ttctgttgat cctgacgctc gcgcaaactg tcgtcgcgac ctggtatatg
     6241 aagaccattc ttccttatca gggttgggcg ctgattaatc ctatggatat ggttggtcag
     6301 gatttgtggg tttcctttat gcagcttctg ccttatatgc tgcaaaccgg tatcctgatc
     6361 ctctttgcgg tactgttctg ttgggtgtcc gccggattct ggacggcgtt aatgggcttc
     6421 ctgcaactgc ttattggtcg cgataaatac agtatatctg cgtcaacagt tggcgatgaa
     6481 ccattaaacc cggagcatcg cacggcgttg atcatgccta tctgtaacga agacgtgaac
     6541 cgtgtttttg ctggcctgcg tgcaacgtgg gaatcagtaa aagccaccgg gaatgccaaa
     6601 cactttgatg tctacattct tagtgacagt tataacccgg atatctgcgt cgcagagcaa
     6661 aaagcctgga tggagcttat cgctgaagtc ggtggcgaag gtcagatttt ctatcgccgc
     6721 cgccgtcgcc gcgtgaagcg taaaagcggt aatatcgatg acttctgccg tcgctggggc
     6781 agccagtaca gctacatggt ggtgctggat gctgactcgg taatgaccgg tgattgtttg
     6841 tgcgggctgg tgcgcctgat ggaagccaac ccgaacgccg ggatcattca gtcgtcgccg
     6901 aaagcgtccg gtatggatac gctgtatgcg cgctgtcagc agttcgcgac ccgcgtgtat
     6961 gggccactgt ttacagccgg tttgcacttc tggcaacttg gcgagtcgca ctactgggga
     7021 cataacgcga ttatccgcgt gaaaccgttt atcgagcact gcgcactggc tccgctgccg
     7081 ggcgaaggtt cctttgccgg ttcaatcctg tcacatgact ttgtagaagc ggcgttgatg
     7141 cgccgtgcag gttggggggt ctggattgct tacgatctcc cgggttctta tgaagaatta
     7201 ccgcctaact tgcttgatga gctaaaacgt gaccgccgct ggtgccacgg taacctgatg
     7261 aacttccgtc tgttcctggt gaagggtatg cacccggttc accgtgcggt gttcctgacg
     7321 ggcgtgatgt cttatctctc cgctccgctg tggtttatgt tcctcgcgct ctctactgca
     7381 ttgcaggtag tacatgcgtt gaccgaaccg caatacttcc tgcaaccacg gcagttgttc
     7441 ccggtgtggc cgcagtggcg tcctgagctg gcgattgcac tttttgcttc gactatggtg
     7501 ctgttgttcc tgccgaagtt attgagcatt ttgcttatct ggtgcaaagg aacgaaagaa
     7561 tacggcggct tctggcgcgt tacattatcg ttgctactgg aagtgctttt ttccgtgctg
     7621 ctggctccgg tacgcatgct gttccatacg gtcttcgttg tcagcgcgtt ccttggctgg
     7681 gaagtggtgt ggaattcacc gcagcgtgat gatgactcca cttcctgggg tgaagcgttc
     7741 aaacgccacg gctcacagct gctgttaggg ttagtgtggg ctgttgggat ggcgtggctg
     7801 gatctgcgtt tcctgttctg gctggcaccg attgtcttct cgttgatcct gtcaccgttt
     7861 gtttcggtga tttccagccg tgccaccgtt ggtctgcgaa ccaaacactg gaaactgttc
     7921 ctgatcccgg aagagtattc accgccgcag gtgctggttg ataccgatcg cttccttgag
     7981 atgaatcgtc aacgctccct tgatgatggt tttatgcacg cggtgtttaa cccgtcattt
     8041 aacgctctgg caaccgcaat ggcgaccgcg cgtcaccgcg ccagtaaggt gctggaaatc
     8101 gcccgtgacc gccacgttga acaggcgctt aacgagacgc cagagaagct gaatcgcgat
     8161 cgtcgcctgg tgctgctaag cgatccggtg acgatggccc gtctgcattt ccgtgtctgg
     8221 aattccccgg agagatattc ttcatgggtg agttattacg aagggataaa gctcaatcca
     8281 ctggcattgc gtaaaccgga tgcggcttcg caataaaaac gtagttgcct gatgcgctac
     8341 gcttatcagg cctacatcgt tcctgcaatt tattgatttt gcaagatttt gtaggttggg
     8401 taaggcgttc acgccgcatc cggcaaaaac aacgagccaa taaaaatacc ggcgtt
//
LOCUS       DADMJB010000170         8417 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.173, whole genome shotgun sequence.
ACCESSION   DADMJB010000170 DADMJB010000000
VERSION     DADMJB010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8417
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.173"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(311..889)
                     /gene="mocA"
                     /locus_tag="JN078_003520"
     CDS             complement(311..889)
                     /gene="mocA"
                     /locus_tag="JN078_003520"
                     /EC_number="2.7.7.76"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor cytidylyltransferase"
                     /protein_id="HAY9042592.1"
                     /translation="MSAIDCIITAAGLSSRMGQWKMMLPWQQGTILDTSIKNALQFCS
                     RIILVTGYRGNELHERYVNQSNITIIHNPDYAQGLLTSVKAAVPAVQTEHCFLTHGDM
                     PTLTIDIFRKIWSLRNDGAILPLHNGIPGHPILVSKPCLMQAIKRPNITNMRQALLMG
                     AHYSVEVENAEIILDIDTPDDFITVQKRYTKI"
     gene            992..1762
                     /gene="yqeC"
                     /locus_tag="JN078_003521"
     CDS             992..1762
                     /gene="yqeC"
                     /locus_tag="JN078_003521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311776.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative selenium-dependent hydroxylase
                     accessory protein YqeC"
                     /protein_id="HAY9042593.1"
                     /translation="MKSIVDPSALFIDLGAQKRPTVISVVGAGGKTSLLFWLAELLQA
                     SGRRVLITTTTHMFMPTSHWPVVFCRDPAMLPHASLTSPISFCFHSWKANQGKVQGFT
                     PEAIDALVQRPECDVILIEADGSRAMPLKAPDEHEPCIPKSSCCVIAVMGGHILGAKV
                     STENVHRWSQFADITGLTPDATLQLSDLVALVRHPQGAFKNVPQGCRRVWFINRFSQC
                     ENAIAQSELLQPLQQHDVEAIWLGDIQEHPAIARRFVN"
     gene            1810..3435
                     /locus_tag="JN078_003522"
     CDS             1810..3435
                     /locus_tag="JN078_003522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF2563 family selenium-dependent molybdenum
                     hydroxylase system protein"
                     /protein_id="HAY9042594.1"
                     /translation="MNIFTEAAKLEEQNCPFAMAQIVDSRGSTPRHSAQMLVRADGSI
                     VGTIGGGMVERKVIEESLQALQERKPRLFHGRMARNGADAVGSDCGGAMSVFISVHGM
                     RPRLVLIGAGHVNRAIAQSAALLGFDIAVADIYRESLNPELFPPSTTLLHAESFGAAV
                     EALDIRPDNFVLIATNNQDREALDKLIEQPIAWLGLLASRRKVQLFLRQLREKGVAEE
                     HIARLHAPVGYNIGAETPQEIAISVLAEILQVKNNAPGGLMMKPSHPSGHQLVVIRGA
                     GDIASGVALRLYHAGFKVIMLEVEKPTVIRCTVAFAQAVFDGEMTVEGVTARLATSSA
                     EAMKLTERGFIPVMVDPACSLLDELKPLCVVDAILAKQNLGTRADMAPVTIALGPGFT
                     AGKDCHAVIETNRGHWLGQVIYSGCAQENTGVPGNIMGHTTRRVIRAPAAGIMRSNVK
                     LGDLVKEGDVIAWIGEHEIKAPLTGMVRGLLNDGLAVVGGFKIGDIDPRGETADFTSV
                     SDKARAIGGGVLEALMMLMHQGVKATKEVLEVA"
     gene            complement(3476..4408)
                     /gene="arcC"
                     /locus_tag="JN078_003523"
     CDS             complement(3476..4408)
                     /gene="arcC"
                     /locus_tag="JN078_003523"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HAY9042595.1"
                     /translation="MSKKIVLALGGNALGDDLAGQMKAVKITSQAIVDLIAQGHEVIV
                     THGNGPQVGMINQAFEAAAKTEAHSPMLPMSVCVALSQGYIGYDLQNVLREELLSRGI
                     NKPVATLVTQVEVDANDPAFLNPTKPIGSFFTEQEAEQLTKQGYTLKEDAGRGYRRVV
                     ASPKPVDIIEKETVKALVDAGQVVITVGGGGIPVIREGNHLRGASAVIDKDWASARLA
                     EMIDADMLIILTAVEKVAINFGKENEQWLDRLSLSDAERFIEEGHFAKGSMLPKVEAA
                     ASFARSRAGREALITVLSKAKEGIEGKTGTVICQ"
     gene            complement(4456..5841)
                     /locus_tag="JN078_003524"
     CDS             complement(4456..5841)
                     /locus_tag="JN078_003524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311773.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-phenylhydantoinase"
                     /protein_id="HAY9042596.1"
                     /translation="MRVLIKNGTVVNADGQAKQDLLIESGIVRQLGNNISPQLPYEEI
                     DATGCYVFPGGVDVHTHFNIDVGIARSCDDFFTGTRAAACGGTTTIIDHMGFGPNGCR
                     LRHQLEVYRGYAAHKAVIDYSFHGVIQHINHAILDEIPMMVEEGLSSFKLYLTYQYKL
                     NDDEVLQALRRLHESGALTTVHPENDAAIASKRAEFIAAGLTAPRYHALSRPLECEAE
                     AIARMINLAQIAGNAPLYIVHLSNGLGLDYLRLARANHQPVWVETCPQYLLLDERSYD
                     TEDGMKFILSPPLRNVREQDKLWCGISDGAIDVVATDHCTFSMAQRLQISKGDFSRCP
                     NGLPGVENRMQLLFSSGVMTGRITPERFVELTSAMPARLFGLWPQKGLLAPGSDGDVV
                     IIDPRQSQQIQHRHLHDNADYSPWEGFTCQGAIVRTLSRGETIFCDGTFTGKAGRGRF
                     LRRKPFVPPVL"
     gene            complement(5894..7105)
                     /locus_tag="JN078_003525"
     CDS             complement(5894..7105)
                     /locus_tag="JN078_003525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgeY family selenium metabolism-linked
                     hydrolase"
                     /protein_id="HAY9042597.1"
                     /translation="MAKNIPFKLILEKAKDYQADMTRFLRDMVAIPSESCDEKRVVHR
                     IKEEMEKVGFDKVEIDPMGNVLGYIGHGPRLVAMDAHIDTVGIGNIKNWDFDPYEGME
                     TDELIGGRGTSDQEGGMASMVYAGKIIKDLGLEDEYTLLVTGTVQEEDCDGLCWQYII
                     EQSGIRPEFVVSTEPTDCQIYRGQRGRMEIRIDVQGVSCHGSAPERGDNAIFKMGPIL
                     GELQELSQRLGYDEFLGKGTLTVSEIFFTSPSRCAVADSCAVSIDRRLTWGETWEGAL
                     DEIRALPAVQKANAVVSMYNYDRPSWTGLVYPTECYFPTWKVEEDHFTVKALVNAYEG
                     LFGKAPVVDKWTFSTNGVSIMGRHGIPVIGFGPGKEPEAHAPNEKTWKSHLVTCAAMY
                     AAIPLSWLATE"
     gene            complement(7163..8290)
                     /locus_tag="JN078_003526"
     CDS             complement(7163..8290)
                     /locus_tag="JN078_003526"
                     /EC_number="4.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopropionate ammonia-lyase"
                     /protein_id="HAY9042598.1"
                     /translation="MSVFSLKIDIADNKFFNGETSPLFSQSQAKLARQFHQKIAGYRP
                     TPLCALDDLANLFGVKKILVKDESKRFGLNAFKMLGGAYAIAQLLCEKYHLDIETLSF
                     EHLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAE
                     CIVTDMNYDDTVRLTMQHAQQHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMR
                     EMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIV
                     NVGGDMATIMAGLACGEPNPLGWEILRNCATQFISCQDSVAALGLGVLAAVHYHPQRQ
                     SLMEKLALNKDAVVLVISTEGDTDVKHYREVVWEGKHAVAP"
BASE COUNT         1985 a         2039 c         2199 g         2194 t
ORIGIN      
        1 tagcttatac agatatcatt gagtgaccgg tgttgagaaa tccggtggtt tagggggata
       61 gagcaacaat cgcaccactc ttgccaggtt tggcgggaaa tataaaaaaa tgtgaggcgg
      121 ctcgaaactt aagggctttt tgtgaatgaa ctcacaggtg ctaaatgaga attaaaatca
      181 ctcctgaaaa ttattattgc cagcccatat atcacttttt ctcttttctc aaaatcagtg
      241 attccttatc attatgataa agagtgctgg agggattaaa tatttgaacg caatcgttta
      301 actacgtttt ttaaatttta gtataccttt tttgcactgt aataaagtcg tccggagtat
      361 caatatctaa aattatttct gcattttcta cttcgacgga ataatgagct cccataagga
      421 gtgcctgacg catattggtg atattggggc gcttgattgc ctgcatcagg catggttttg
      481 acactaaaat cggatggccg gggatgccat tatggagtgg cagtattgcg ccatcatttc
      541 gtaacgacca gatttttctg aaaatatcga tggtgagggt tggcatgtca ccgtgggtga
      601 gaaaacaatg ttctgtttgc actgcgggta ctgcggcctt tactgatgtt agtaaaccct
      661 gcgcataatc tgggttgtgg ataatagtga tattgctctg gttcacataa cgttcgtgca
      721 gttcattacc acgatagccg gtgactaaaa taattcggct acaaaactgc aacgcatttt
      781 tgatacttgt atcaagaatt gtcccctgtt gccagggtaa catcattttc cattgcccca
      841 ttcttgatga taatccggca gcggtaatta tacagtcgat ggctgacata gtggttccat
      901 tatttatagg ggctaataac gcctgataat tgcgttactt cctgatggat taagttgggg
      961 ataatttatc ccagagaggt cataaagact cgtgaaaagt atagttgacc catcggcatt
     1021 attcattgat ttaggtgcgc agaaacgtcc cactgtgatt tctgttgttg gtgctggggg
     1081 gaaaaccagc ttgctttttt ggctggcaga actgctccag gctagcggca ggcgtgtgtt
     1141 aatcacgacg acaacacata tgtttatgcc aacgtctcac tggcccgtgg ttttctgtcg
     1201 tgatcccgcc atgcttcctc atgcgtctct tacatccccc atttcatttt gttttcacag
     1261 ctggaaagcg aaccagggaa aagtgcaggg atttacgcca gaagcgattg atgcactggt
     1321 gcaacgacca gagtgtgacg taattctcat tgaagcagat ggctcgcgtg caatgccgtt
     1381 aaaagcgcct gatgagcacg aaccttgcat acccaaaagc agttgctgcg tgattgctgt
     1441 gatgggagga catattttgg gcgcgaaagt gagcacagaa aatgtccatc gctggtcgca
     1501 gtttgctgat attactgggt taacacctga tgcaaccttg caactgagcg atctcgttgc
     1561 gctggttcgc caccctcagg gggcgtttaa aaacgtaccg caaggttgtc ggcgagtctg
     1621 gttcattaac cgtttttctc aatgtgagaa tgcgattgca caaagcgagc tccttcaacc
     1681 gctgcaacaa cacgacgtag aggcaatctg gctaggcgat atacaagaac atcctgcaat
     1741 cgcgcgcaga tttgtgaatt agcggcccgg gtattccggg ttactgaaag gatatccatt
     1801 gaggttggta tgaatatttt cacagaggct gcaaaactcg aagagcaaaa ttgtccgttt
     1861 gcgatggcgc aaattgttga tagccgaggc tcgactcccc gccattctgc acaaatgtta
     1921 gtgcgcgccg atggttctat cgtcggtaca attggtggcg gaatggttga gcggaaggtg
     1981 attgaagagt cacttcaggc attgcaggaa cgtaagccgc gattattcca tggacgtatg
     2041 gctcgtaacg gtgcggatgc tgtcgggtca gattgtggag gtgcaatgtc agtatttatc
     2101 agcgtccatg gtatgcgtcc acgtctggtg ttgattggcg cggggcatgt caaccgggcg
     2161 atagcccaga gtgccgcgct attaggattt gatattgccg ttgccgatat ttatcgcgaa
     2221 agcctcaatc ctgaactatt cccaccatca accacgcttc tccatgctga gtcgtttggt
     2281 gcggcagtgg aagcactgga tattcgccct gataattttg tcctgattgc cacgaataat
     2341 caggatcgtg aagccctcga caaactcatt gaacagccca ttgcatggtt ggggttgctg
     2401 gcaagtcgcc gcaaggttca gcttttcctg cgtcaattgc gtgagaaagg cgtggctgaa
     2461 gaacatattg cccgtttaca tgcgcccgtt ggttacaaca taggtgcgga aacgccgcag
     2521 gagatcgcca tcagcgtgct ggcagaaata ttacaggtga aaaataacgc gccgggtggg
     2581 ctgatgatga aaccttctca tccttccgga caccagctgg tggtgattcg cggtgcggga
     2641 gatatcgcca gtggtgtggc gctacgtctg tatcatgcgg gttttaaagt gatcatgctg
     2701 gaagtggaaa aaccgacagt gattcgttgt accgtggcgt ttgcccaggc cgtgttcgat
     2761 ggcgaaatga cggtcgaagg cgtcactgct cgcctggcaa ccagctctgc ggaagcgatg
     2821 aaacttaccg aacgcggatt catccctgtg atggtagatc ccgcctgttc attgcttgat
     2881 gaactgaaac cgctttgcgt ggtggacgct attctggcga aacagaattt gggaacgcgg
     2941 gcagatatgg caccagtaac aatcgcgctt gggccgggct ttactgcagg gaaggattgt
     3001 catgcggtaa ttgaaacaaa tcgcgggcac tggctcggtc aggtgattta ctctggttgt
     3061 gcgcaggaga ataccggtgt tcctggcaat attatggggc ataccacccg acgggtgatc
     3121 cgtgctcctg ctgcaggcat tatgcgatcc aacgtgaaat taggcgatct ggtgaaagag
     3181 ggcgatgtga ttgcctggat tggtgagcat gaaattaaag caccgttgac ggggatggtg
     3241 cgtggcttgt tgaacgacgg cctggcagtg gttggtggtt ttaaaattgg tgatatcgat
     3301 cctcgtggtg aaaccgctga tttcaccagc gtttctgata aagcccgggc gattggcggc
     3361 ggcgtacttg aggcgttaat gatgttgatg catcagggcg tgaaagcgac aaaagaagtg
     3421 ctggaagtgg cttaaatgaa aatggccgga tggtattacc cacccggcct taaaattact
     3481 gacaaatcac cgttccggtt ttgccttcaa tcccttcttt cgctttgctc aatacggtaa
     3541 tcagtgcttc acgacctgcg cgagagcgag caaacgaggc ggcagcttcc actttaggca
     3601 gcatagaacc tttcgcaaaa tgaccttctt cgataaagcg ttcagcatca cttaatgaca
     3661 ggcgatcgag ccactgttca ttctctttac cgaagttaat ggccactttt tctaccgcag
     3721 tcagaatgat cagcatatcg gcatcaatca tttctgctaa acgggcgctg gcccagtctt
     3781 tatcgataac cgcgctggca ccacgcagat ggttaccttc acgaataaca gggataccac
     3841 caccgccaac ggtgatcacc acctggcctg catctaccag agctttaaca gtttcttttt
     3901 caatgatatc aaccggtttt ggcgaggcaa caacacggcg atagccgcga ccagcatctt
     3961 ctttcagagt gtaaccctgt tttgtcagtt gctctgcttc ttgctcggta aagaacgaac
     4021 cgatcggctt ggtcgggttg aggaatgccg gatcgttagc gtcgacttcg acctgagtaa
     4081 ccagcgttgc tacaggttta ttaatgcccc gagaaagcag ttcttctctt aacacgtttt
     4141 gtagatcgta accaatataa ccctggctta aggcaacaca gacagacatc ggcagcattg
     4201 gcgagtgtgc ttcagttttt gcggcagctt caaaggcctg gttaatcatg cccacctgcg
     4261 gcccgttacc atgagtgacg ataacttcat gtccttgggc aattaaatca acaattgcct
     4321 gagaagtaat ttttaccgct ttcatttgtc cggccaggtc atcgcccagc gcattcccgc
     4381 ccagggcgag aacaattttc ttactcattt ttcctcactc atcattcttg attgtgtata
     4441 gatccctgac agtggttaga gcacgggagg gacaaacggt ttgcgtcgca ggaaacgacc
     4501 tcgcccggct ttgcctgtaa aggtgccgtc acagaaaatc gtttcaccac gggataaggt
     4561 tctgacaatc gcgccctgac aggtaaaacc ctcccatggc gagtagtcgg cgttgtcgtg
     4621 gagatggcga tgctgaattt gttggctctg acgtgggtcg ataatcacca cgtcgccatc
     4681 ggaaccgggc gctaataatc ctttttgcgg ccacaggcca aacagcctgg cgggcattgc
     4741 gctggttaat tcaacaaagc gttccggtgt tatacgtccc gtcatcacgc cactggaaaa
     4801 cagtaactgc atgcggtttt ccacaccggg taagccattt gggcagcgac tgaaatcgcc
     4861 tttagaaatt tgcaggcgtt gagccatcga gaaggtgcag tgatcggtcg ccaccacgtc
     4921 aatcgcacca tcgctgatgc cacaccacag tttgtcctgc tcgcgtacgt tacgcagcgg
     4981 tgggctaaga atgaacttca tgccatcttc tgtatcgtaa ctgcgttcgt ccaacaggag
     5041 atattgtggg caggtttcaa cccagactgg ctggtgattc gcacgggcaa gacgcagata
     5101 atccagacct aagccgttag acaggtgcac gatatagagc ggggcgttac cggcaatttg
     5161 tgccaggtta atcatgcggg cgatggcttc cgcttcgcat tccagagggc gactcaaggc
     5221 atgatagcgc ggcgcggtta accctgcggc gataaattcc gcccgcttgc tggcgatagc
     5281 cgcatcattt tccgggtgca cggtggtcag cgcgccggat tcatgcaagc ggcgtaatgc
     5341 ctgcaaaacc tcgtcatcgt tgagtttgta ttgataggtt aaatagagtt taaaactgct
     5401 cagtccttcc tcgaccatca tcgggatttc gtcgaggatt gcgtgattaa tgtgctggat
     5461 cacaccgtga aagctgtaat cgatgaccgc tttatgggcg gcataaccac gataaacctc
     5521 cagttgatgg cgtaaccgac agccgtttgg gccaaatccc atatggtcaa taatggttgt
     5581 tgtaccgcca cacgcagctg cgcgggtacc ggtaaaaaaa tcatcacaac tgcgcgcgat
     5641 gccgacatca atattgaaat gcgtatggac atccacgccg cctgggaaaa cgtaacagcc
     5701 agtggcatca atttcttcat acgggagctg cggcgaaata ttgttgccca actggcgaac
     5761 aatcccgctt tcaatcagca aatcctgttt ggcttgtcca tctgcgttaa cgacagtgcc
     5821 gtttttgatc aatacgcgca tagcaaactc caaaaaccct ccggcgaacc ggaggggaat
     5881 aagtgaagag taattactct gttgccagcc agcttaacgg gattgcagcg tacatcgcgg
     5941 cacaggtcac caggtgagat ttccaggttt tttcgttagg tgcatgcgct tcaggttctt
     6001 tacccgggcc aaagccgatc accggaatgc cgtgacggcc catgatagat acgccgttag
     6061 ttgagaaggt ccacttatca acaaccggcg ctttgccaaa cagcccttcg taggcattca
     6121 ccagtgcttt aacggtgaag tgatcttctt ccactttcca ggtcgggaag tagcattcgg
     6181 ttgggtaaac caggccagtc caggacggac ggtcgtagtt gtacatagaa acaaccgcgt
     6241 tagctttctg tactgcaggc agggcgcgga tttcgtccag cgcgccttcc caggtttcgc
     6301 cccaggtcag acggcggtca atagagacgg cgcagctatc tgctacagcg caacggcttg
     6361 gggatgtgaa gaagatttca gaaacggtga gggtgccttt gccgaggaat tcgtcataac
     6421 ccagacgttg ggagagttct tgtaattcgc caagaatcgg acccattttg aaaatggcgt
     6481 tgtcaccgcg ttctggcgca gaaccgtggc agctaacacc ctgaacatca atacgaattt
     6541 ccatacgacc gcgctgacca cggtatatct ggcagtcggt tggttcggta ctgaccacaa
     6601 attccgggcg aatgccggat tgttcaataa tgtactgcca gcacagaccg tcgcagtctt
     6661 cttcctgcac agtaccggta accagcaggg tatattcatc ttccagaccg aggtctttaa
     6721 tgattttacc ggcataaacc atagatgcca tgccgccttc ctggtcggaa gtaccgcgac
     6781 caccgattag ctcatcagtt tccatgcctt cgtacggatc gaagtcccag tttttgatgt
     6841 tgccaatgcc gacggtatcg atatgagcgt ccattgccac cagacgcggg ccgtggccga
     6901 tataaccgag aacgttgccc atcgggtcga tttcaacttt atcgaagccg actttttcca
     6961 tctcttcttt aatacgatgt actacgcgtt tttcgtcgca gctttcactg ggaatagcaa
     7021 ccatgtcgcg caggaagcga gtcatgtccg cctggtaatc ttttgctttt tcaagaatca
     7081 gtttgaatgg aatattctta gccattattt ttctccagat tttttactcc ccgttttgca
     7141 gggagtagtt ccaatagggt gattaaggtg ctacagcgtg tttgccttcc cagacaactt
     7201 cgcggtagtg cttcacgtcg gtgtcgcctt cagtactgat aaccagcact acggcatctt
     7261 tgttcagcgc cagtttttcc atcaggcttt gacgttgcgg gtgataatga accgctgcga
     7321 gaacgcccaa acctaatgcg gcaacgctgt cctggcagga gatgaattgg gtggcgcagt
     7381 tacgtaggat ttcccagccc agcgggttag gttcgccaca ggccaggccc gccatgatgg
     7441 tggccatatc accgccaacg ttgacgatgt cgcctttgac gccggagcga taaatacagt
     7501 cagctttgtc aggttcaaca ataatgctgt gcagattttg cgggctgtag acgtcgacca
     7561 gataacccag cacaccaccg gccattgctc cgacaccggc ttgcagcaga acgtgcgtcg
     7621 gggttacgcc catttcacgc atttgctcga cggcttcatc tgccagggtt gcgtagcctt
     7681 gcatgatcca ggttgggatt ttggtgtaac cttcccatgc cgtgtcctgt accacttccc
     7741 agccgtgctg ctgcgcgtgt tgcatggtca ggcgaacggt atcgtcatag ttcatatccg
     7801 tgacgatgca ctcggcaccg aggttcagaa tggcgtcaac gcgttcctga gcagaacctt
     7861 tcggcatgta aatcaccgca ttctgtccga gttgctgtgc tgcccacgcc acaccgcgcc
     7921 cgtggttgcc gtcggtggtg gtcgcgaaag tcattttttc gccgatggca tttttcaggt
     7981 gctcaaatga cagcgtttcg atatcaagat gatatttttc acacaataat tgagcgatgg
     8041 cgtacgcacc gccaagcatt ttgaaggcgt tcagaccgaa tcgttttgat tcgtctttga
     8101 cgagaatttt cttcacacca aaaaggtttg cgagatcgtc cagcgcacaa agcggtgttg
     8161 ggcgataacc agctattttc tggtggaact ggcgcgccag tttggcctgg ctttgcgaaa
     8221 agagcggtga tgtttcgccg ttgaaaaatt tgttatcggc gatatcaatc ttcaatgaga
     8281 aaacggacat atcctatcct tttggcctct ggaaatagag ggccgaccag ctgatcggcc
     8341 cgaggggtta tttcacgcgt tcttgcgctt ctttcagcag ttgctcgagc agtgcacctg
     8401 gtttggcgta tttacgg
//
LOCUS       DADMJB010000171         8316 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.174, whole genome shotgun sequence.
ACCESSION   DADMJB010000171 DADMJB010000000
VERSION     DADMJB010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8316
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.174"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(135..211)
                     /locus_tag="JN078_003527"
     tRNA            complement(135..211)
                     /locus_tag="JN078_003527"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(175..177),aa:Asp,seq:gtc)
     gene            complement(344..1075)
                     /gene="dnaQ"
                     /locus_tag="JN078_003528"
     CDS             complement(344..1075)
                     /gene="dnaQ"
                     /locus_tag="JN078_003528"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706156.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HAY9042599.1"
                     /translation="MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLT
                     GNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAF
                     DIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRT
                     LHGALLDAQILAEVYLAMTGGQTSMAFAMEGETQQQQGEATIQRIVRQASKLRVVFAT
                     DEELAAHEARLDLVEKKGGSCLWRA"
     gene            1140..1607
                     /gene="rnhA"
                     /locus_tag="JN078_003529"
     CDS             1140..1607
                     /gene="rnhA"
                     /locus_tag="JN078_003529"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HAY9042600.1"
                     /translation="MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTN
                     NRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVD
                     LWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV"
     gene            complement(1604..2326)
                     /locus_tag="JN078_003530"
     CDS             complement(1604..2326)
                     /locus_tag="JN078_003530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308236.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAY9042601.1"
                     /translation="MKPARVPQTVVAPDRWGDLPWGELYRKALERQLNPWFTKMYGFH
                     LLKIGNLSAEINCEACAVSHQVNVSAQGMPVQVQADPLHLPFADKSVDVCLLAHTLPW
                     CTDPHRLLRETDRVLIDDGWLVISGFNPISLMGLRKLVPVLRKTSPYNSRMFTLMRQL
                     DWLSLLNFEVLHASRFHVLPWNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMKQ
                     SKNKPRIRQAVGATRQCRKPQA"
     gene            2360..3115
                     /gene="gloB"
                     /locus_tag="JN078_003531"
     CDS             2360..3115
                     /gene="gloB"
                     /locus_tag="JN078_003531"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HAY9042602.1"
                     /translation="MNLNSIPAFDDNYIWVLNDEAGRCLIVDPGDAEPVLNAIAANNW
                     QPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQDKGTTQVVKDGETAFVLGHEF
                     SVIATPGHTLGHICYFSKPYLFCGDTLFSGGCGRLFEGTASQMYQSLNKLSALPDDTL
                     VCCAHEYTLSNMKFALSILPHDLSINDYYRKVKELRAKNQITLPVILKNERQINVFLR
                     TEDIDLINVINEETLLQQPEERFAWLRSKKDRF"
     gene            3187..4545
                     /gene="mltD"
                     /locus_tag="JN078_003532"
     CDS             3187..4545
                     /gene="mltD"
                     /locus_tag="JN078_003532"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase D"
                     /protein_id="HAY9042603.1"
                     /translation="MKAKAILLASVLLVGCQSTGNVQQHAQSLSAAGQGEAAKFTSQA
                     RWMDDGTSIAPDGDLWAFIGDELKMGIPENDRIREQKQKYLRNKSYLHDVTLRAEPYM
                     YWIAGQVKKRNMPMELVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQTRNY
                     DARRDVVASTTAALNMMQRLNKMFDGDWLLTVAAYNSGEGRVMKAIKTNKARGKSTDF
                     WSLPLPQETKQYVPKMLALSDILKNSKRYGVRLPTTDESRALARVHLSSPVEMAKVAD
                     MAGISVSKLKTFNAGVKGSTLGASGPQYVMVPKKHADQLRDSLASGEIAAVQSTLVAD
                     NTPLNSRVYTVRSGDTLSSIASRLGVSTKDLQQWNKLRGSKLKPGQSLTIGAGSSAQR
                     LANNSDSITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVKNNNMP
                     DS"
     gene            complement(4594..5217)
                     /locus_tag="JN078_003533"
     CDS             complement(4594..5217)
                     /locus_tag="JN078_003533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HAY9042604.1"
                     /translation="MSGLPQGRPTFGAAQNVSAVVAYDLSAHMLDVVAQAAEARQLKN
                     ITTRQGYAASLPFADNAFDIVISRYSAHHWHDVGAALREVNRILKPGGRLIVMDVMSP
                     GHPVRDIWLQAVEALRDTSHVRNYASGAWLTLINEANLIVDNLITDKLPLEFSSWVVR
                     MRTPEALVDAIRIYQQSASTEVRTYFSLQTDGSFTSDIIMVEAHKAA"
     gene            complement(5221..6021)
                     /locus_tag="JN078_003534"
     CDS             complement(5221..6021)
                     /locus_tag="JN078_003534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HAY9042605.1"
                     /translation="MRKNTYAMRYVAGQPAERILPPGSFASIGQALPLGEPLSTEERI
                     RILVWNIYKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFV
                     LPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNF
                     SLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTD
                     DQRRRAFGRPLDFVFYRGLNVSEASVLVTRASDHNPLLVEFSPGKPDK"
     gene            6262..7176
                     /locus_tag="JN078_003535"
     CDS             6262..7176
                     /locus_tag="JN078_003535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY9042606.1"
                     /translation="MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMK
                     LGVSLLNRTTRQLSLTEEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATP
                     VVLHFLMPLIKPFRERYPEVTLSLVSSETIINLIERKVDVAIRAGTLTDSSLRARPLF
                     NSYRKIIASPDYISRYGKPETIDDLKQHVCLGFTEPASLNTWPIACSDGQLHEVKYGL
                     SSNSGETLKQLCLSGNGIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDR
                     AVSTRIRAFIDFLSEHVKTAPGGAVREA"
     gene            complement(7173..7940)
                     /gene="dkgB"
                     /locus_tag="JN078_003536"
     CDS             complement(7173..7940)
                     /gene="dkgB"
                     /locus_tag="JN078_003536"
                     /EC_number="1.1.1.346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005009525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-didehydrogluconate reductase DkgB"
                     /protein_id="HAY9042607.1"
                     /translation="MKDYVVISSVKTALELGYRAIDTAQIYDNEAAVGQAIAESGVPR
                     HELYITTKIWIENLSKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEGVMQAL
                     LEAKKQGLTREIGISNFTIPLMEKAIAAVGAENIATNQIELSPYLQNRKVVAWAKQHG
                     IHITSYMTLAYGKALKDEVIARIAAKHNATPAQVILAWAMGEGYSVIPSSTKRKNLES
                     NLKAQNLQLDAEDKKAIAALDCNDRLVSPEGLAPEWD"
     gene            complement(8128..8204)
                     /locus_tag="JN078_003537"
     tRNA            complement(8128..8204)
                     /locus_tag="JN078_003537"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8168..8170),aa:Asp,seq:gtc)
BASE COUNT         2217 a         2014 c         2014 g         2071 t
ORIGIN      
        1 tggtctacca tatgtgatta acacatttac agcataacaa aaccatagac cgaagaaata
       61 gcgggattta aatgcaaaaa aaccgcaaaa ttaaaaatct tgcggttctc tgaactcatt
      121 ttcatgagtg aatttggcgg aacggacggg actcgaaccc gcgaccccct gcgtgacagg
      181 caggtattct aaccgactga actaccgctc cgcgttgtgt tccgttggga acgaggcgaa
      241 tattacggat tgcctcaccc ttcgtcaacg gtttttctca tcttttgaat cgtttgctgc
      301 aaaaatcgcc caagccgcta tttttagcgc cttttacagg tatttatgcc cgccagaggc
      361 agcttccgcc cttcttctcc accagatcaa gacgggcttc atgagctgca agctcttcat
      421 ctgtcgcaaa aacaacgcgt aacttacttg cctgacgtac aatgcgctga attgttgctt
      481 caccttgttg ctgctgtgtc tctccttcca tcgcaaaagc catcgacgtt tgaccaccgg
      541 tcatcgccag ataaacttcc gcaaggatct gtgcatcgag taatgccccg tgtagcgttc
      601 gtttactgtt atctatttcg tagcgggcac ataacgcatc gaggctgttg cgcttaccag
      661 gaaacatttt cctcgccacc gcaaggctat cggtgacctt acagaaggta ttggtcttcg
      721 gaatatcgcg cttaagcaac gaaaactcgt agtccataaa gccgatatcg aacgctgcgt
      781 tatggatcac caactccgcg ccgcggatat agtccatgaa ctcatcggct acttcggcaa
      841 acgtgggctt atcgagcaaa aattcatcgg caataccatg tacgccaaag gcttccggat
      901 ccaccagccg atcgggtttg agataaacat ggaagttatt gcccgtcagg cgacggttca
      961 ccacttcaac ggcaccaatc tcaatgatct tgtggccttc atagtgcgca ccaatctggt
     1021 tcataccggt ggtttcggta tcgagaacga tctggcgtgt aattgcagtg ctcatagcgg
     1081 tcatttatgt cagacttatc gttttacagt tcgattcaat tacaggaagt ctaccagaga
     1141 tgcttaaaca ggtagaaatt ttcaccgatg gttcgtgtct gggcaatcca ggacctgggg
     1201 gttacggcgc tattttacgc tatcgcggac gcgagaaaac ctttagcgca ggctacaccc
     1261 gcaccaccaa caaccgtatg gagttgatgg ccgctattgt cgcgctggag gcgttaaaag
     1321 aacattgcga agtcattttg agtaccgaca gccagtatgt ccgccagggt atcacccagt
     1381 ggatccataa ctggaaaaaa cgtggctgga aaaccgcaga caaaaaacca gtaaaaaatg
     1441 tcgatctctg gcaacgtctt gatgctgccc tagggcaaca tcaaatcaaa tgggaatggg
     1501 ttaaaggcca tgccggacac ccggaaaacg aacgctgtga tgaactggct cgtgctgcgg
     1561 caatgaatcc cacactggaa gatacgggct accaagtcga agtttaagct tgtggtttac
     1621 gacattgccg ggtggctcca accgcttggc gaattcgtgg cttgttttta ctctgtttca
     1681 tcgggtttag cgttaaagga atagtccgtt tccgggcaac aataagttgt aagcaaccaa
     1741 gcgcaggaat atgcgcattc aatagttttc ctccgtgttt gttccacggg agaacgtgga
     1801 aacggctggc gtgcagcact tcaaaattca acaaagagag ccagtccagt tgccgcatca
     1861 gagtaaacat ccggctgtta tagggcgagg tttttcgcaa taccggcaca agtttgcgta
     1921 atcccattaa actaatggga ttgaagccac taatcaccag ccagccatca tcaatcaata
     1981 cccgatcggt ttcacgcaat aaacgatgcg gatcggtgca ccacggcaat gtatgtgcca
     2041 gtagacaaac atcaacggat ttatcggcaa aaggaagatg aagtggatcc gcctgcacct
     2101 ggacgggcat tccttgcgca gaaacattca cttgatgaga aaccgcgcac gcttcgcaat
     2161 tgatttctgc gcttaaattg ccaatcttaa gcagatgaaa accatacatt ttagtgaacc
     2221 acgggttgag ctggcgctcc agcgccttgc gataaagctc tccccagggc aaatcgcccc
     2281 agcgatcagg agccacgaca gtttgaggga ctcttgccgg tttcatcaca accttccgtt
     2341 tcacactaag aggtaatcta tgaatcttaa cagtattccc gcctttgatg acaattacat
     2401 ctgggttttg aatgatgaag caggtcgctg cctgattgtc gatcccggag acgcagagcc
     2461 agtattaaac gccattgccg ccaataactg gcaaccggag gccatatttc tcacccacca
     2521 tcatcacgat cacgttggcg gcgtaaaaga actggtggaa aagtttccgc aaattgtggt
     2581 gtatggtcca caagagacac aagataaggg aacaacacag gtagtcaaag atggcgaaac
     2641 tgccttcgtt ttggggcatg aatttagtgt aattgccaca ccgggtcaca ctttaggaca
     2701 tatctgttac ttcagtaaac cttatctatt ttgcggcgac acgctgtttt ctggtgggtg
     2761 tggtaggttg tttgaaggga cagcatcaca aatgtatcaa tcacttaata agttaagtgc
     2821 gttacctgac gatacattgg tatgttgtgc tcatgaatat acgttatcaa atatgaagtt
     2881 tgctttgagt attcttccgc acgatttgtc cataaatgat tattatcgta aagttaagga
     2941 gttacgggca aaaaatcaaa taacactacc cgtaattctg aaaaatgagc ggcaaattaa
     3001 tgttttttta agaacggaag atattgattt aattaatgta attaatgaag aaacattatt
     3061 gcaacaacct gaagagcgtt ttgcatggtt aaggtcaaag aaagataggt tctgataaaa
     3121 ctttcttgtc atcggctccg ttcgccgtta tgatcggtcg tcttttaagc aactattgac
     3181 acacacatga aggcaaaagc gatattactc gcctctgtcc tgctcgtggg ttgccagagt
     3241 accggcaacg ttcaacagca cgcacagagc ctttctgcag ctggtcaagg ggaagcagca
     3301 aagtttacaa gtcaggcacg atggatggac gatgggacgt ctatcgcgcc agatggtgac
     3361 ttgtgggctt tcattggcga cgagctaaag atgggaattc cggaaaatga ccggattcgc
     3421 gaacagaaac agaaatattt acgcaataag agctatctcc acgatgtaac tttacgggca
     3481 gagccgtata tgtactggat agcagggcaa gttaaaaaac gtaacatgcc tatggaactg
     3541 gtactactac ccatagtgga gagcgctttt gatcctcacg caacgtctgg cgccaatgcc
     3601 gcaggcatct ggcagatcat tccgagcacg gggcgcaatt atggtttgaa acagacccgc
     3661 aattatgacg cgcgtcgcga tgttgttgct tcaacaactg ccgcgctgaa catgatgcag
     3721 cgtctgaaca agatgtttga cggcgactgg cttctgaccg tagcggctta taacagcggc
     3781 gaaggtcggg tcatgaaggc aattaaaacg aacaaagcgc gtgggaaatc cacggacttc
     3841 tggtcgttac cgttgccgca ggaaacgaag cagtacgtgc ctaaaatgct ggcattgagt
     3901 gatattctca aaaacagcaa gcgttatggc gtacgtctgc caacgaccga tgaaagccgt
     3961 gctctggcgc gtgtgcacct gagcagcccg gttgaaatgg cgaaggttgc agatatggcg
     4021 gggatttccg tcagcaagct gaagacattc aacgctggcg taaaaggctc cacgctgggc
     4081 gcaagtggcc cgcagtacgt gatggtgcca aagaagcatg cagatcaact gcgtgattct
     4141 ctcgcttcag gcgaaattgc tgctgtacag tcgacgctgg ttgccgacaa tacgccgctt
     4201 aacagccgtg tttacaccgt acgctctggc gacacgcttt caagcatcgc ttcacgtctc
     4261 ggcgtaagca ccaaagattt gcagcagtgg aacaaactgc gcggatctaa gctgaagcca
     4321 ggccaaagtt tgacgattgg tgcaggcagt agcgcacagc ggttggcaaa caacagcgat
     4381 agcattacgt atcgtgtgcg caaaggcgat tcgctttcaa gcattgctaa acgccacggc
     4441 gtgaacatca aagatgtgat gcgctggaac agtgacactg cgaatctgca accaggcgat
     4501 aagctgacgt tgtttgtgaa aaacaacaac atgccagatt cctgacaaac cagataataa
     4561 aaaaggcacc gattcccccg gtgccttttt tatttatgcc gctttatgcg cttctaccat
     4621 gatgatatca ctggtgaaag agccatcagt ctgcaaggaa aaatacgttc tcacctctgt
     4681 cgatgcgctc tgttggtaaa tgcgaatagc gtctactaac gcttctggcg tacgcattct
     4741 cacgacccat gaagaaaatt ccagcggtaa cttatctgta attaaattat caactataag
     4801 attggcttca ttgattaacg tcaaccacgc accgctggcg tagtttcgta cgtgagaggt
     4861 atcgcgtaat gcttctaccg cctgtaacca gatgtcgcgc actgggtgac ccggagacat
     4921 tacatccatc acaatcagcc taccgccagg tttcaatatc ctattcactt ctcgcagtgc
     4981 tgcaccaaca tcatgccagt gatgggcaga ataacggctg ataacaatat caaatgcgtt
     5041 atcggcaaat ggcagacttg cggcatatcc ctggcgggtg gtgatatttt tcagttgccg
     5101 ggcttcggca gcttgtgcca cgacatccag catgtgggcc gataagtcat acgccaccac
     5161 cgcgctcacg ttttgcgcag cgccaaacgt tggtctgccc tgtggcagac ctgacatacc
     5221 ttatttatca ggcttgccgg gactgaattc aacgagtagc ggattgtgat cggaagcgcg
     5281 cgtaaccagt acagaagctt cactgacgtt cagaccacgg tagaaaacaa aatcgagcgg
     5341 gcgaccaaac gcccgacggc gctgatcatc ggtaaaacgc acctggcgca gcgacatttc
     5401 ccgcgcaaag cgatataacg cgttcatcct tctacggctc caggcattga aatctcccgc
     5461 cataatgacc gggccgctgt ggtgagctat ctgatcacca ataggaagta actgcttact
     5521 atagacatcc acgcccagac tgaagttgac ggcgtgtata ttaaccacca tcaacaggcg
     5581 ggtgtcaggt aatggataga ccgtcaccag tgccgacttc gccagacgca aaatgggttc
     5641 tcgttcacgt aacgggcagc aatacactgg atgtgccgcc gaaagggtca ttacgccaga
     5701 aggatgttgt ggcagcacga aagcgggtac ctgatcggcg gcaagatagt tagcggtcgc
     5761 aaactgtact aactctggcg ttgtctgcgc ttcctgcaat aacaccaggt gtgcatcttt
     5821 gccgtagttc tttaataccg acaaccattc agcgcgttgc tgtttgtata tgttccacac
     5881 caggatccga atacgctctt cggtacttaa cggttcccca agtggtaatg cctggccgat
     5941 gctcgcaaaa gaccccggcg gtaagatcct ttccgcaggt tgtccggcaa catagcgcat
     6001 ggcataggtg ttttttcgca cttttgactt tgaaacctct attacgtcaa cccttccgca
     6061 ctcgggaggg ttctactatt atagggattt tagctcactc tttcaacgag caattgtata
     6121 ttgttatgta agcaagtgct tacaccggtc agaattttgc tcattatgga gaacattaaa
     6181 tcgcatgaca tatcacgcat cctgatggtt taatgacaaa taaattcaaa atatctcttc
     6241 tattttgcaa caggagcaaa aatgaaagcc acgtcggaag aactcgccat ttttgtttcg
     6301 gtcgtcgaaa gcggcagctt tagccgggca gcggaacaat tagggcaagc aaactcagcg
     6361 gtaagccggg cggtgaaaaa gctggagatg aaacttggcg ttagcctgct taatcggacc
     6421 acgcgacaac ttagcctgac ggaagaaggc gagcgttatt ttcgtcgcgt acagtcaatt
     6481 ttgcaggaga tggcagcggc agaatcagaa attatggaga cgcgtaatac accgcgtgga
     6541 ctgttacgga tcgatgccgc aactccagtg gtgctgcact ttctgatgcc gttaattaag
     6601 cctttccgtg aacgctatcc ggaagtcact ttgtcgctag tctcctccga aacgattatt
     6661 aatttgatcg aaagaaaagt ggatgtcgcg atacgcgctg gtacgttaac ggattccagc
     6721 ttacgtgcca ggccgttatt taacagttat cgaaaaatta tcgcctcccc cgattatatt
     6781 tcccgctacg ggaagccaga aacgatcgac gatttaaagc aacatgtttg cctgggattc
     6841 actgaacccg cttccctcaa tacctggccg atagcctgta gtgatggaca attacatgag
     6901 gtgaaatacg gtttgtcatc caatagtggg gaaacactga aacagctttg cctgagtggc
     6961 aacgggattg cgtgtttgtc cgactacatg atcgacagag aaatcgctcg cggagaattg
     7021 gtggagttaa tggcagataa agtgttgcca gtggaaatgc cattcagtgc cgtctattac
     7081 agcgaccgtg cggtaagtac gcgcatccgg gcttttatcg atttccttag cgagcatgta
     7141 aaaacagctc ccggaggagc tgtcagagag gcttaatccc attcaggagc cagaccttcc
     7201 gggctaacca ggcggtcgtt gcaatccagt gcggcgatcg cttttttatc ttcggcatca
     7261 agctgtaaat tttgtgcctt aagattactt tccaggtttt tacgtttagt agaagaagga
     7321 attactgagt aaccttcccc catagcccac gccagaatca cttgtgccgg agtcgcattg
     7381 tgtttagctg cgatacgagc aataacctca tctttcaggg ccttaccata cgccagcgtc
     7441 atataggaag taatatggat gccgtgctgt ttagcccagg caaccacttt acggttttgc
     7501 agataaggag agagttcaat ctggttagta gcgatgtttt cagcgccaac agcagcaatc
     7561 gccttttcca tcaatgggat cgtgaagttg gaaataccga tctcacgcgt cagcccttgt
     7621 tttttggctt ccagcagcgc ctgcataacc ccttcaacag agacttcatc gtttggtgac
     7681 ggccagtgga ttagcgtcag atcaacataa tcggtacgca atttttgcag gctctctttc
     7741 agacttggga tcaatttgtc tttgctgaga ttttcaatcc agattttagt ggtgatgtag
     7801 agttcatgac gtggcacgcc actttctgca atcgcctgac ctactgcggc ttcgttatca
     7861 tagatttgtg cggtatcaat tgcgcgataa ccaagttcaa gcgccgtttt cacagatgaa
     7921 ataacaacgt agtctttcaa cctaaaccaa atgcagggat agccataata tgcctctttt
     7981 aatgctattt tcgttaactg aggtgattat gggcttcaga ctgttgagga aaaaagcgta
     8041 aaatgcagag gatttttgcg attctggcaa taatagatat acagacgaaa aaaaacctcg
     8101 agcgttaact cgaggcttct taataagtgg cggaacggac gggactcgaa cccgcgaccc
     8161 cctgcgtgac aggcaggtat tctaaccgac tgaactaccg ctccaccgaa ttcttttaca
     8221 accaccggtt ttatgaccgg cttactgctt aatttgatgc ctggcagttc cctactctcg
     8281 catggggaga ccccacacta ccatcggcgc tacggc
//
LOCUS       DADMJB010000172         8312 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.175, whole genome shotgun sequence.
ACCESSION   DADMJB010000172 DADMJB010000000
VERSION     DADMJB010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8312)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8312)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8312
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.175"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(95..1765)
                     /locus_tag="JN078_003538"
     CDS             complement(95..1765)
                     /locus_tag="JN078_003538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HscC"
                     /protein_id="HAY9042608.1"
                     /translation="MDNAELTIGIDLGTTNSLIAVWKDGAAQLIPNKFGEYLTPSIIS
                     MDENNHILVGKPAVSRRTSHPDKTAALFKRAMGSNTNWRLGSDTFNAPELSSLVLRSL
                     KEDAEEFLQRPIKDVVISVPAYFSDEQRKHTRLAAELAGLNAVRLINEPTAAAMAYGL
                     HTQQNTRSLVFDLGGGTFDVTVLEYATPVIEIHASAGDSFLGGEDFTHMLVDEVLKRA
                     EVARTTLNESELAALYACVEAAKCSNQSPLHIRWQYQEETRECEFYENELEDLWLPLL
                     NRLRVPIEQALRDARLKPSQIDSLVLVGGASQMPLVQRIAVRLFGKLPYQSYDPSTIV
                     ALGAAIQAACRLRSEDIEEVILTDICPYSLGVEVNRQGVSGIFSPIIERNTTVPVSRV
                     ETYSTMHPEQDSITVNVYQGENHKVKNNILVESFDVPLKKTGAYQSIDIRFSYDINGL
                     LEVDVLLEDGSVKSRVINHSPVTLSTQQIEESRTRLSALKIYPRDMLINRTFKAKLEE
                     LWARALGDEREEIGRVITDFDAALQSNDMARVDEVRRRASDYLAIEIP"
     gene            complement(1849..2784)
                     /gene="rihA"
                     /locus_tag="JN078_003539"
     CDS             complement(1849..2784)
                     /gene="rihA"
                     /locus_tag="JN078_003539"
                     /EC_number="3.2.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine-specific ribonucleoside hydrolase
                     RihA"
                     /protein_id="HAY9042609.1"
                     /translation="MALPILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEK
                     TLRNVLRMLTLLNRTDIPVAGGAVKPLMRELIIADNVHGESGLDGPALPEPTFAPQNC
                     TAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMGLGNWT
                     PAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVTHKAQIHIEDTERFRAIGNPVSTIVAE
                     LLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERWVGVETQGKYTQGMTVV
                     DYYYLTDNKPNATVMVDVDRQGFVDLLADRLKFYA"
     gene            complement(2902..3627)
                     /gene="gltL"
                     /locus_tag="JN078_003540"
     CDS             complement(2902..3627)
                     /gene="gltL"
                     /locus_tag="JN078_003540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020457015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter ATP binding
                     protein GltL"
                     /protein_id="HAY9042610.1"
                     /translation="MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLI
                     KTVNGLEPVQQGEITVDGIVVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQ
                     VKVLKRDKVPAREKALKLLERVGLSAHANKFPAQLSGGQQQRVAIARALCMDPIAMLF
                     DEPTSALDPEMINEVLDVMVELANEGMTMMVVTHEMGFARKVANRVIFMDEGKIVEDS
                     PKDAFFDDPKSDRAKDFLAKILH"
     gene            complement(3627..4301)
                     /gene="gltK"
                     /locus_tag="JN078_003541"
     CDS             complement(3627..4301)
                     /gene="gltK"
                     /locus_tag="JN078_003541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter permease
                     GltK"
                     /protein_id="HAY9042611.1"
                     /translation="MYEFDWSSIVPSLPYLLDGLVITLKITVTAVVIGILWGTMLAVM
                     RLSSFAPVAWFAKAYVNIFRSIPLVMVLLWFYLIVPGFLQNVLGLSPKNDIRLISAMV
                     AFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLT
                     QGIVLFQDTSLVYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSY
                     LKRRTA"
     gene            complement(4301..5041)
                     /gene="gltJ"
                     /locus_tag="JN078_003542"
     CDS             complement(4301..5041)
                     /gene="gltJ"
                     /locus_tag="JN078_003542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter permease
                     GltJ"
                     /protein_id="HAY9042612.1"
                     /translation="MSIDWNWGIFLQQAPFGNTTYLGWIWSGFQVTIALSICAWIIAF
                     LVGSFFGILRTVPNRFLSGLGTLYVELFRNVPLIVQFFTWYLVIPELLPEKIGMWFKA
                     ELDPNIQFFLSSMLCLGLFTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVL
                     LPNAYRVIVPPMTSEMMNLVKNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLA
                     YVLINAIIMLVMTLVERKVRLPGNMGGK"
     gene            complement(5211..6119)
                     /gene="gltI"
                     /locus_tag="JN078_003543"
     CDS             complement(5211..6119)
                     /gene="gltI"
                     /locus_tag="JN078_003543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter
                     substrate-binding protein GltI"
                     /protein_id="HAY9042613.1"
                     /translation="MQLRKPATAILALALSAGLAQADDAAPAAGSTLDKIAKNGVIVV
                     GHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLL
                     QNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIKDFADLKDKAVVVTS
                     GTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKK
                     PDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNPIPP
                     KNLNMNFELSDEMKALFKEPNDKALN"
     gene            6574..>8312
                     /locus_tag="JN078_003544"
     CDS             6574..>8312
                     /locus_tag="JN078_003544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001276742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HAY9042614.1"
                     /translation="MSASSVKPLNVQLPAITLILFALCIGIFCYLAQWMSYEEVDQSA
                     LIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMFAFLVVGGVAEQILGKWRLLI
                     TWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGAAIATQLASGAGTYHKNQR
                     RVFSLLGMVALTLLYGARQTGIDNACHIGGLIAGGALGWLSARLSGQNRLVTEGGIIV
                     AGSLLLTGAIWLAQQQMDESVLQVRQSLREAFYPQEIEQERRQKKQQLAEERNALRET
                     LSAPVSREQASGDLLAEIADIHDMAISRDGNMLYAAIENTNSIVVFDLGQKKILHTFT
                     APIAKEKSVKHCGGCKDQGVRSLALSPDEKLIYATSFEANALSVINVATGEIIQSITT
                     GAHPDSLILSRDGTKAWVMNRTSNSVSAIDLVTYQHVADIPLEKYDGAGTSGKPGAWV
                     MALSPDERTLLVPGAGRGNIVRINTITHQKEDFPAGDARGTISAMRFRPENGEVIFAD
                     SQGISRISVGDQQASIMTQWCSRSVYSVEGISPDGQYLALVSYGLQGYVILLNINAGQ
                     IIGVYPASYVNHLR"
BASE COUNT         2075 a         2053 c         2076 g         2108 t
ORIGIN      
        1 atgctctcgg caaaatcgcg atgttgttta gttgacgatg tgttttttgc gccgatgccg
       61 gatgcagcgt ttacgccgca tccggcagcc gtgtttatgg gatctcaatg gctaaataat
      121 cgctcgcccg ccgccgaact tcatccacgc gggccatgtc gtttgactgt agcgccgcat
      181 caaaatcggt gatcacccgg ccaatctctt ctcgctcgtc acccagcgct cgcgcccaca
      241 actcttccag tttggcttta aaggtgcgat tgatgagcat atcgcgcgga taaattttca
      301 atgcggataa ccgcgtccga ctctcttcaa tctgctgcgt gctcaatgtt accgggctgt
      361 ggttaatcac tctggactta acgctgccgt cttccagaag cacgtcaact tcaagcaacc
      421 cgttgatatc ataactaaag cgaatatcaa tcgactgata agccccggtt ttcttcaacg
      481 gcacatcgaa ggattcaacc agaatgttat ttttaacttt gtggttttct ccctgataga
      541 cgttaaccgt aattgaatcc tgctccgggt gcatggtcga gtaagtttct acacgcgaca
      601 ccggtactgt ggtgtttcgt tcaataatcg gcgagaaaat gccggaaacg ccctggcggt
      661 taacttcaac gcccaacgag taagggcaaa tatcagtgag gattacctct tcaatatctt
      721 cactgcgtaa gcggcaggcg gcctggattg ctgcgcccag cgcgacaatg gtgctcggat
      781 cgtaactttg atacggtaat ttgccaaaca gacgcacggc gattcgctgc accagcggca
      841 tttgtgacgc gccgccaacc agcaccagac tgtcgatttg actcggcttc agacgcgcat
      901 cgcgcaacgc ctgttcaatc ggcactcgca agcgattgag cagcggcaac cacaaatctt
      961 ccagttcgtt ctcgtaaaat tcgcattccc gcgtttcttc ctgatactgc cagcgaatgt
     1021 gcaatggcga ttgattgcta cattttgccg cttccacaca ggcgtacaag gctgccagtt
     1081 cactctcgtt aagcgtggtc ctggcaactt ccgcgcgttt taaaacctca tcgaccagca
     1141 tatgggtaaa atcttcgcca ccgaggaagc tatcgccagc ggaggcgtga atttcaatca
     1201 ccggcgtggc gtactcaagc accgtaacgt caaacgtgcc gccaccgaga tcaaaaacca
     1261 gcgagcgggt attttgttgc gtatgcaggc catatgccat cgcagctgct gtgggttcat
     1321 taattaagcg taccgcattt aacccggcta actccgcagc taaacgggta tgcttgcgtt
     1381 gttcatcgct gaaataagcc ggaacggaga tcaccacatc tttaatcgga cgttgcagaa
     1441 attcttcggc atcttctttt aatgagcgta ataccaaaga ggacagttct ggcgcgttaa
     1501 atgtgtcgct gcctaaccgc cagttggtat tactgcccat tgcgcgttta aataacgctg
     1561 ccgttttatc cggatgcgaa gtacgccgtg atacagccgg ttttccgact aaaatatgat
     1621 tattttcatc catgctaatt atggatggtg ttaaatattc accgaactta tttggaatta
     1681 attgcgcggc accgtctttc cagacggcaa ttaaactatt ggtagtgccg agatcgatac
     1741 caatggtgag ttctgcatta tccattgcat ttatatcttg aaagaaaaag agataaacag
     1801 attaagacca cccaggtaac gcgtggtgat cttaatcaat gacgtgtgtt aagcgtaaaa
     1861 tttcagacga tcagccagta aatcaacaaa gccctgacga tcaacatcga ccattacagt
     1921 ggcattcggt ttattgtcag tcagataata ataatcaaca accgtcatac cctgggtata
     1981 tttcccctgt gtttccacgc caacccagcg ctcaacagtg gtaaacaact cgggtttcaa
     2041 cagccaggcg atggtgcatg ggtcatgcag cggtgcaccg acaaagcccc atttttcgtc
     2101 tttatgatat tcgaggaaga aatccagcag ttcggcaaca atggttgaaa cagggttgcc
     2161 aatcgcgcgg aaacgctcgg tgtcttcaat gtggatttgc gctttatgag taacatccag
     2221 accggccatc accactggga tccctgactg gaagacaatt tctgccgctt ccgggtcaac
     2281 gtaaatatta aattcagccg caggcgtcca gttaccaagc cccattgcgc cgcccataat
     2341 cacgatacgg gcaattttgc tatgcagttc cggatggcta ttgagcagca aggcaacgtt
     2401 agtttgcggt ccggtagaca caatcgtgac aggttccgca ctttcgcgca gcgttttcgc
     2461 catcagctct accgccgtac agttttgcgg tgcgaacgtc ggttccggta atgccgggcc
     2521 atccagaccg ctttcgccgt gcacattgtc cgcgataatc aactcacgca ttaacggttt
     2581 taccgcgccg cctgctaccg gaatatcggt gcgattaagc aaggtcagca tacgcagaac
     2641 attgcgtaag gttttttctg gtgtctggtt tccggcggaa gacgtaattg ctttgacatc
     2701 aagctctggt gaggcgaggg cgagaactat tgcgatagcg tcgtcatgac ctgggtcgca
     2761 atctaacaga attggcagtg ccattgttgc tccttgttgt gtgcttcttt gcgacaaggg
     2821 taacgccagg atgtaacaga tacgaggggc gaaacgataa agcgtgagat ggcgcgcact
     2881 tgggtatgcg cgccagagtg attaatgcag gattttcgcg aggaagtctt tcgcgcggtc
     2941 cgatttcgga tcatcgaaga aagcgtcttt cggcgagtct tcgacaattt taccctcgtc
     3001 cataaagatc acccgattcg ccactttgcg ggcaaagccc atttcgtggg tcaccaccat
     3061 catggtcatt ccttcgttcg ccagttccac catcacgtcc agcacttcgt tgatcatctc
     3121 cggatccagc gccgatgtcg gttcgtcgaa cagcatcgca ataggatcca tacacaacgc
     3181 gcgagcgatt gccacacgct gctgctgacc gccggaaagc tgcgccggaa atttattggc
     3241 atgtgcggaa agtcccacgc gctccagcaa tttcaatgct ttttcacgag cgggcacttt
     3301 atcgcgttta agcactttca cctgcgccag agtcaggttt tcaataatcg acaaatgggg
     3361 gaacaactca aaatgctgga acaccatccc gacgcgggaa cgcagctttg ccagatcggt
     3421 tttcttgtca ttaaccacga taccatcgac ggtgatttca ccttgctgca ctggttcgag
     3481 gccgttgacg gttttaatca gcgttgattt gccggaacca gacgggccgc aaaccaccac
     3541 cacttcgcct tttttcactt cggttgagca gtcggtcagc acctgaaagt gaccatacca
     3601 ttttgaaaca tttttcaggg taatcattat gctgtccttc ttttcaagta gctgaccaac
     3661 aacgacgcgc taagactaat aacgaaataa acaaatccgg caaacaggat catctcaacc
     3721 tgcgtaccat cacgctcacc aatggttgag gcggtacgga agaaatcggc cagagataac
     3781 acatacacca gtgaggtatc ctggaacagt acgatgccct gagtgagcag aagcggcacc
     3841 atcgcgcgga acgcctgcgg cagaataatc agtttcatcg actgccagtg agtcattccc
     3901 aacgccagcg cggcgctcga ctgaccacga gaaatacttt gaataccagc acggataatc
     3961 tctgaatagt aggccgcttc aaacatcgaa aacgccacca tcgccgaaat taaacggata
     4021 tcattttttg gtgataatcc cagcacgttt tgcagaaaac ctggcacgat caggtaaaac
     4081 cacagcaaaa ccataactaa aggaatcgag cggaatatgt taacgtaggc tttggcaaac
     4141 cacgctacgg gcgcaaagct ggacaagcgc atcaccgcca gcatggtgcc ccacaaaata
     4201 ccaatcacga ctgccgtgac ggtgattttc agcgtgatca ccagcccgtc gagcagatat
     4261 ggcagggaag ggacaatgga actccagtca aactcgtaca ttatttgccc cccatgttgc
     4321 caggcaggcg aactttacgt tcaaccagcg tcattaccag catgataatc gcgttaatca
     4381 acacatacgc cagcgtaata gcggtaaacg actcccaggc gtgggctgag taatcaagca
     4441 atttacccgc ctgcgccgcc atatccacca gaccaatagt cgaggcgatg gcggagtttt
     4501 tcaccaggtt catcatctcg gaagtcatcg gcgggacgat aacgcgataa gcattaggca
     4561 gcagtacgta tcgataagcc tgcggtagcg tcaggcccat cgccagcgcg gcattttttt
     4621 gcccacgcgg caacgactga atggcggcgc gtacctgttc gcaaacacgg gcggcggtaa
     4681 acagccccag gcagagcatg gatgaaagga aaaactgaat attgggatcc agctcggcct
     4741 taaaccacat gccgattttc tccggcaaca gctccgggat caccagatac caggtaaaga
     4801 attgcacaat caacggcacg ttgcggaaca gttcgacata caacgtaccc agaccggaga
     4861 gaaaacggtt tggaacggta cgtaaaatgc cgaaaaatga accgacgagg aaagcgataa
     4921 tccaggcgca gatcgacaaa gcgatcgtca cctgaaaacc actccagatc caaccaagat
     4981 aggtggtgtt gccgaacggg gcttgttgta aaaaaatacc ccagttccag tctatagaca
     5041 taaatctact ccagaaaaaa gagggtagca gcgttaactg ctaccctcga agattgttac
     5101 ccagcgtatt gcggttttca ggcccgatgg ggaacgacca tcaggcgtat agtctgtccg
     5161 tgctacgtaa caatcgagag ggctggaatt tccgcccctg gttcttgtaa ttagttcagt
     5221 gctttgtcat tcggttcttt gaacagtgct ttcatttcgt ctgacagttc gaaattcatg
     5281 ttcaggtttt tcggcggaat tggatttttg aaccatttat caaaccattt ttccgcttca
     5341 ccggaagtct gcacctgagc gatagtgtca tccatcagct ttttgaactg cggatcatct
     5401 ttacgcaaca tgcaaccgta ggcttcctga gactgcggct tgccgacgat atcccagttg
     5461 tctggtttct tcgctttcgc acgttcaccg gccagcaggg catcatccat cataaaggca
     5521 acggcacgac cgctttccag ggtgcggaaa gagtcaccgt gatctttggc gctgatgatg
     5581 cgcatattca ttttttgctc ttcattcagt ttgttgagca aaacttcaga ggtagtgccg
     5641 gaagtgacga ctacggcttt gtctttcagg tcggcaaaat ctttgatatc gccgcccttt
     5701 ttggtcagca ggcgcgtacc gaccacgaaa atagtatcag agaaagccgc ctgtttttgg
     5761 cgttcgacgt tgttggtggt agaaccacat tcaaaatcga aagtgccgtt ttgcagcagt
     5821 ggaatacggt tttgtgaggt aatcggaatc agttttacct gcaagtccgg tttgttgagt
     5881 ttctttttca ctgcttcaac aatggcgttg gagtaatcct gcgagtaacc caccactttt
     5941 tgctgattgt cgtaataaga gaaaggtact gaagattcac ggtgaccgac gacaatcaca
     6001 ccgtttttgg cgattttgtc cagcgtactg cctgctgccg gggcggcgtc atctgcctgt
     6061 gccagtcctg cggaaagcgc cagggcgagg attgctgtgg caggtttacg taattgcata
     6121 tccaactcct ttatcttctg cgttaagaac gcatggatac ccgttgtgag tgtttgtgtt
     6181 gttatcgtct gcaactttat tgtgcagtgt tgtgcctgtt aggtaacatt tagtttggct
     6241 aaatgtaaag atattgctgt tttattgttt gtttttgcga gatgcgccgc accattccga
     6301 agcaaaattc ttaaaccgca cctttttggt gctaccgctg atttgtggtg gtgcaacctg
     6361 gttgcgtcgc ggctgatttc atcgcttaca cagtaaataa agcaacttac atgccaaaaa
     6421 atacttaggg gcaaattaat tacgattgta attttaggct gaaaaagtca tatttcggac
     6481 agaattatct tttcggcatg ggacgtttgc cgggatgata actgcacacg ggaaaaatgc
     6541 tttttacctg tcttttcaag gaagaaacac cttatgtctg catcttcggt taagccgtta
     6601 aatgttcaat tacccgcaat aacccttatc ctttttgcac tctgtattgg gatattttgt
     6661 tatctcgcac aatggatgag ttatgaagag gtcgatcaat ccgcacttat ccatctcggc
     6721 gcaaacgttg cgcctcttac tttgtcgggt gaaccctggc gcttattgag cagtatcttt
     6781 ctgcacagta gtgtttctca tctgctgatg aatatgtttg cattcctggt cgtgggaggc
     6841 gtggcggaac agattctggg gaaatggcga ctcctgatta cctggttatt ctccggcgtc
     6901 tttggtgggc tcatcagcgc ctgttatgcg ttacgcgata gtgatcagat agtcatcagc
     6961 gttggggcat ccggggcaat tatgggaata gctggcgctg cgatagcaac acagcttgct
     7021 tcaggtgcgg gcacatacca taaaaaccag cggcgagtat tttctctgtt gggtatggtg
     7081 gcgctgacac tgttgtatgg tgcccggcaa acaggaatag ataatgcttg tcacattggc
     7141 ggcctgattg cgggtggcgc gttgggttgg ctgagcgcgc gtttatctgg gcaaaaccga
     7201 ctcgttacgg aaggcgggat tattgttgcg ggcagtcttc ttctgaccgg ggctatctgg
     7261 cttgcgcagc agcagatgga tgagtcagtt ttacaagtca ggcaaagcct gcgtgaagcg
     7321 ttttatccac aggagattga acaagagcga cggcaaaaaa agcagcagtt agcggaggaa
     7381 cgcaacgccc tcagggaaac attatccgct ccggtaagtc gtgaacaggc cagtggtgat
     7441 ttgctcgctg agattgccga tatccatgat atggcgatca gtcgggatgg taatatgttg
     7501 tatgccgcaa ttgaaaacac gaacagcatt gttgttttcg acctcggaca aaagaaaatc
     7561 ctgcatacct ttacagcgcc catagcgaaa gaaaagtcag tcaaacattg tggtggctgt
     7621 aaagatcagg gcgtcagatc gctggcatta agcccggatg aaaagttgat ttatgcgact
     7681 tcatttgaag cgaatgcgtt atcggtcatt aacgtggcga caggggagat tattcagtcg
     7741 attaccaccg gtgcacatcc tgacagcctt atcctctcgc gtgatggcac aaaagcctgg
     7801 gtgatgaatc gcaccagtaa tagtgtgtca gcgattgatc tggtgactta tcagcatgtg
     7861 gcggatatcc cgctggagaa atacgacggg gcggggacga gcggtaaacc aggcgcctgg
     7921 gttatggcac tttccccgga tgaaagaaca ttactggttc cgggagcagg cagaggtaac
     7981 atcgtgcgga tcaataccat cacgcatcag aaagaagact ttcccgcagg tgatgcgcgt
     8041 ggaacgatat cggcgatgcg ttttcgacct gaaaacggcg aggttatttt tgcagatagt
     8101 caggggattt cacgtataag cgtaggggat caacaagcca gcattatgac gcaatggtgt
     8161 agcaggagcg tttattccgt tgagggtatt agcccggacg gtcaatattt agcgttggtg
     8221 tcatatggcc tgcaaggtta tgtcatcctg ctcaatatta atgccgggca gattattggc
     8281 gtttatcctg ccagctacgt taatcacctt cg
//
LOCUS       DADMJB010000173         8194 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.176, whole genome shotgun sequence.
ACCESSION   DADMJB010000173 DADMJB010000000
VERSION     DADMJB010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8194)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8194)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8194
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.176"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..815)
                     /locus_tag="JN078_003545"
     CDS             complement(<1..815)
                     /locus_tag="JN078_003545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HAY9042615.1"
                     /translation="MKPAHNPSFFRSFCGLGCISRLSVEEQNITDYHRIWDNWAKEGA
                     ATEDRTQAVRLLKICLAFQEPALNLSLLRLRSLPYLPPHIQELNISSNELRSLPELPP
                     SLTVLKASDNRLSRLPALPPHLVALDVSLNRVLTCLPSLPSSLQSLSALLNSLETLPD
                     LPPALQKLSVGNNQLTALPELPCELQELSAFDNRLQELPPLPQNLRLLNVGENQLHRL
                     PELPQRLQSLYIPNNQLNTLPDSIMNLHIYADVNIYNNPLSTRTLQALQRLTSS"
     gene            907..993
                     /locus_tag="JN078_003546"
                     /pseudo
     CDS             907..993
                     /locus_tag="JN078_003546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015869530.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1003..1083)
                     /locus_tag="JN078_003547"
                     /pseudo
     CDS             complement(1003..1083)
                     /locus_tag="JN078_003547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416850.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
     gene            1294..1383
                     /locus_tag="JN078_003548"
                     /pseudo
     CDS             1294..1383
                     /locus_tag="JN078_003548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311139.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1175 family protein"
     gene            1407..5921
                     /locus_tag="JN078_003549"
                     /pseudo
     CDS             1407..5921
                     /locus_tag="JN078_003549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000536590.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2-macroglobulin family protein"
     gene            5922..7571
                     /locus_tag="JN078_003550"
     CDS             5922..7571
                     /locus_tag="JN078_003550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2300 domain-containing protein"
                     /protein_id="HAY9042616.1"
                     /translation="MNWRRIVWLLALVTQPTLAEETPLQLALRGAQHDQLYQLSSSGV
                     TTVSALPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRD
                     TALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLA
                     TLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTD
                     GTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKST
                     TAVKPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDRE
                     AKSTPPEAAKAMTVAIHTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWT
                     QDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRS
                     TCQLLPKAKAWLAKKMPQWRRILQGETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRN
                     FFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD"
     gene            7576..>8194
                     /locus_tag="JN078_003551"
     CDS             7576..>8194
                     /locus_tag="JN078_003551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042617.1"
                     /translation="MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASF
                     SQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKIQQGRLVVNGASMPQRVESDGSF
                     ARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHV
                     VTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQV"
BASE COUNT         2002 a         1968 c         2300 g         1924 t
ORIGIN      
        1 gaagaggtta atctttgcag ggcttgcaga gtgcgagtcg acaatggatt gttataaata
       61 ttaacatctg cataaatgtg cagattcatg atactgtctg gcaatgtgtt cagctgattg
      121 ttagggatat atagtgattg cagacgttgt ggaagttcgg gcagtctgtg tagttggttt
      181 tccccaacgt ttaaaagcct cagattttga ggaaggggcg gtagctcttg taatctgtta
      241 tcaaaagcac ttagttcctg tagttcacat ggtaattctg gtaaggcagt aagctggttg
      301 ttgccaacag aaagtttttg tagagccggg ggaagatcag gtagcgtctc caggctattg
      361 agaagggctg agagtgactg caaggaagat ggaagagaag gtaaacatgt taaaactctg
      421 ttaagtgaaa catcaagagc gaccaggtga ggcggaagag ccgggagcct gctcagtctg
      481 ttatcgctgg ctttaagtac agttaaggac ggagggagtt ctggcagaga gcgtagctca
      541 ttgctagaga tgttaagttc ttgtatgtgc gggggcaggt atgggagaga gcgtaatctg
      601 agtaaactta aattgagggc tggctcttga aaagccagac atattttcag taatcgaact
      661 gcctgtgttc ggtcttctgt tgcagcacct tccttggccc agttatccca gatgcggtga
      721 taatccgtga tattttgctc ttctacggat aaacgggata tacatcctaa accacaaaag
      781 gagcggaaaa aagaaggatt gtgggcaggt ttcatttatt attgatcctc attgtttata
      841 tattaatatg ttcgtgcaaa tggagtgagg attctttaaa aaaacgctcc tgtaaatagt
      901 taagaacagg aagaactgtt ggggatgtgg ctggccgaaa atgaaggggt gaagttctgg
      961 ctcaatgtgc tgactgaact gaaaaaacgc ggttggtcgc cctacctttt catcaagcca
     1021 gtagtctgcc caccactgca tcatttctct gcgcttatcg agatactgag catggttgta
     1081 aattcaacta acccagtgcg ttgacaaaaa attagcgcaa gaagacaaaa aatcaccttg
     1141 cgctaatgct ctgtatcagg tcactaatac cagctaagta gttgattcat agtgactgta
     1201 tatgttgtgc tttgtcgcat tttgtagtct attatttaat ctgtaacaac gataatacaa
     1261 tgaattttaa ttggtttttg tgattttgtc cttcttctga catggaagga cacccgatgg
     1321 atacccaacg attccaatcc caatttcatt ggcatttatc gtttaaattt tctggcgcga
     1381 tagcagcgtg cttgtctctg tctcttgtgg gaacagggct tgctaatgct gatgattcgc
     1441 ttccttccag taactatgcg ccgcccgccg ggggaacatt ctttttgctt gctgacagca
     1501 gttttagcag cagtgaagag gcgaaagtgc gactggaagc gccggggcgt gattatcggc
     1561 gctatcagat ggaagagtac ggcggcgtgg acgttcgcct gtatcgtatt cctgacccga
     1621 tggcattttt gcgccagcag aaaaacctgc atcgcattgt ggtgcaaccg caatatctgg
     1681 gcgacgggct gaacaatacg ctgacctggc tgtgggataa ctggtacggc aaatctcgcc
     1741 gcgtaatgca gcgtactttc tcttctcagt cacggcagaa tgtgactcag gcattacccg
     1801 aattacatct cggcaatgcc attattaaac cttcccgtta tgtacagaac aaccagtttt
     1861 ccccgctgaa aaaatatccc ttggtggaac agttccgtta tccactatgg caggctaaac
     1921 cggtcgagcc gcagcaaggg gtaaaactgg aaggcgcatc cagcaatttc atctcgccgc
     1981 agccgggtaa catttatatt cctctcggcc aacaagagcc gggactgtac ctcgtcgagg
     2041 cgatggttgg tgggtatcgg gcgacgacgg tggtgtttgt ttccgatacc gtggctctta
     2101 gcaaagtgtc aggcaacgag cttctggtgt ggaccgcggg taaaaaacag ggtgaagcga
     2161 agcccggctc agagatcttg tggactgacg gtcttggcgt gatgacccgc ggtgtgaccg
     2221 atgacagcgg taccttgcag ttacaacata tatcgccaga acgttcatac attctgggta
     2281 aggatgctga aggcggcgtt tttgtctccg agaacttctt ctacgaaagc gaaatctaca
     2341 acacccgctt gtatattttt accgatcgcc cgctatatcg cgcaggcgat cgtgtcgatg
     2401 ttaaagtgat gggccgcgag ttccacgatc cgttgcattc atcccccatc gtcagcgccc
     2461 cggcgaagct ttcggtgctg gacgctaacg gcagtctgtt gcaaaccgtc gatgtcacgc
     2521 tggatgcgcg caatggcggg cagggaagtt tccgcctgcc agaaaatgcc gttgccggag
     2581 gttatgagtt acgtcttgct taccgcaatc aggtctatag cagcagtttt cgcgtggcaa
     2641 actacatcaa gccacatttc gagattggtt tagctctcga caaaaaagag ttcaaaactg
     2701 gcgaagcggt cagcggcaaa ctgcaactgc tctacccgga tggcgagccg gtaaaaaatg
     2761 cccgcgtgca gttaagtttg cgcgctcagc aattatcaat ggtcggtaac gatttgcgtt
     2821 atgccggacg tttccccgtg tcgctggaag gcagcgaaac ggtgtccgac gccagcggtc
     2881 atgtggcgtt aaatctcccc gccgccgata aaccgagccg ttatttgtta accgtctccg
     2941 ccagtgacgg cgcggcgtat cgtgtcacca ccaccaaaga gatcctcatt gaacgcggtc
     3001 tggcgcatta ctcattaagt actgccgcac aatacagtaa tagcggcgag tcggttgtgt
     3061 tccgttatgc cgcgctggaa tcttcaaaac aggttcctgt tacgtatgaa tggttgcgtc
     3121 tcgaagaccg cacgagccat agcggagagc taccgtcagg cggcaaatcc tttaccgtca
     3181 atttcgctaa acctggcaac tacaatctga cattacgcga taaagacggc ttaattctcg
     3241 ctgggttaag ttatgccgtc agcggtaagg gcagcacggc gcatacgggt acggtagata
     3301 tcgtggcgga taaaacgctg taccagccag gcgaaaccgc gaagatgctg attacctttc
     3361 cggagccaat tgatgaagca ttattgacgc tggaacgcga tcgcgtggaa cagcagtcgc
     3421 tgctttcgca tccggcaaac tggctaacgc tacaacgttt aaacgatacc cagtatgaag
     3481 cccgggttcc agtgagcaat tcctttgcgc ctaacatcac tttttcggtg ctgtataccc
     3541 gtaatggtca gtacagtttt cagaacgccg ggatcaaagt tgccgttcct cagcttgata
     3601 tccgggtgaa aacggacaaa acccattacc agccaggtga actggtcaat gtcgaattaa
     3661 cctcgtcgct gaaaggtaaa cctgtttctg cgcagctaac ggtaggcgtg gtcgatgaaa
     3721 tgatctacgc gctgcaacca gaaatcgcgc cgaatatcgg caaatttttc tatccgctgg
     3781 ggcgtaacaa tgtgcgtacc agctccagtc tgtcgtttat cagctacgac caggcgctct
     3841 ccagcgagcc ggttgcgcct ggcgcaacta accgcagcga gcggcgagta aaaatgcttg
     3901 aacgtccacg gcgtgaagag gtggataccg cggcatggat gccgtcactc acaaccgata
     3961 aacaaggcaa agcgtatttc acgttcctga tgcctgattc gttaacccgc tggcgtatca
     4021 ccgcgcgtgg gatgaacggc gacgggctgg tcgggcaggg gcgtgcttat ctgcgttcgg
     4081 aaaaaaatct ctacatgaag tggagtatgc caacggtgta tcgcgtgggc gacaaaccgg
     4141 cggcaggact gtttatcttc agtcagcagg ataacgaacc ggtggcgctg gtgactaaat
     4201 ttgcaggcgc tgagatgcgc cagacgctga cgctgcacaa aggggcgaat tatatttcgc
     4261 tggcgcagaa tattcagcaa tctggcttgt taagtgcaga actgcaacaa aatgggcaag
     4321 tgcaggacag cattagcaca aaactgtctt ttgtggacaa cagcaggccc gttgaacagc
     4381 agaaaaatgt catgctcggc ggtggcgaga acgcgctgat gttgcccgag caggcgagta
     4441 atatccggct acaaagtagt gaaacgccgc aggagatttt ccgcaacaat cttgatgcgt
     4501 tagtcgatga accgtggggt ggggtgatca acaccggtag ccgtctgatc ccgctcagtc
     4561 tcgcctggcg ttcgcttgcc gatcatcaaa gtgccgccgc taacgacatt cgtcagatga
     4621 ttcaggataa ccgtctgcgg ctgatgcaac tggcggggcc cggagcgcgc tttacctggt
     4681 ggggtgaaga tggcaatggt gacgccttcc ttacggcatg ggcatggtac gccgactggc
     4741 aggccagcta ggcgctcggc gtaacgcaac aaccggaata ctggcagcat atgctcgaca
     4801 gttatgccga gcaggcggat aacatgccgt tattgcatcg ggcgctggtg ctggcgtggg
     4861 cacaggagat gaatctgccg tgcaaaacgt tgttgaaagg gttggatgaa gctatcgccc
     4921 ggcgcggaac taaagatgaa gatttctctg aggaagacat ccgcgatatc aatgacagcc
     4981 tgatcctcga tacaccggaa tctccactgg cagatgcggt ggcaaacgtc ttaaccatga
     5041 cgttgctgaa aaaagcgcag ttgaagtcca cggtgatgcc acaggttcag caatatgcgt
     5101 gggataaagc ggcaaacagc aatcagccgc tggcgcacac ggttgtgctg ctcaatagcg
     5161 gtggtgacgc tacccagacg gccgctattt taagtggttt gaccgctgag caatccacta
     5221 ttgagcgcgc gctggccatg aactggctgg cgaaatatat ggcgacaatg cctccagttg
     5281 ttttgcctgc gcctgcgggc gcatgggcta aacataagtt aactggaggg ggcgaatact
     5341 ggcgttgggt tggtcagggc gtgccggaca ttctctcttt tggtgacgaa ttatcgccgc
     5401 aaaatgtgca ggtccgctgg cgtgagccgg caaaaatggc tcaacaaagt aacattccgg
     5461 tgaccgttga acgccagttg tatcggctta tccctggtga agaagagatg agctttattc
     5521 tgcaaccggt gaccagcaat gagattgaca gcgatgcgct gtatctcgat gacatcacgc
     5581 ttaccagcga gcaggatgca gttctgcgct acggtcaggt ggaagtaccg ctgccaccgg
     5641 gagccgacgt tgagcgcaca acatggggca tttcggtcaa taaacccaac gccgcgaaac
     5701 agcaggggca attgctggaa aaagcgcgaa atgaaatggg cgaactggcc tatatggtgc
     5761 cggtgaaaga actgacggga acggtcactt tccgccattt gctgcgcttc tcgcaaaaag
     5821 ggcaattcgt tctgcctcct gctcgttatg tgcgttccta tgcacctgca cagcaaagtg
     5881 ttgcggcagg gagtgaatgg accgggatgc aggtgaaata agtgaactgg cgcagaatcg
     5941 tctggctatt ggcgttggtt actcagccaa cgcttgcgga ggagacgccg ttacaactgg
     6001 cactgcgtgg tgcgcagcac gatcaactgt atcagctgtc gtcatcaggc gtgaccacag
     6061 tctcagcatt acctgactcg ctcaccacgc cgttagggag tttgtggaaa ctgtatgttt
     6121 acgcctggct ggaggatacc catcaaccgg agcagcccta ccagtgtcgc ggaaactccc
     6181 cggaagaggt ttattgttgt caggctgggg agagcataac gcgcgatacc gcgctggtac
     6241 gttcctgtgg gctctatttt gcgccgcagc ggttgcatat tggcgcagat gtgtgggggc
     6301 aatactggca acagcgtcag gcgcctgcgt ggttagcgtc tcttactacg ctgaagccag
     6361 aaacctcggt aacggttaaa tcgctgcttg attcattagc gacgttacct gcgcaaaaca
     6421 aagctcagga agtcttactg gatgtggtgc tggacgaggc gaaaatcggt gtcgcatcca
     6481 tgctcggtag tcgggtacgg gtgaaaacct ggagctggtt tgccgatgat aaacaggaaa
     6541 tccgtcaggg tggttttgcc ggctggttaa ccgatggtac accgctgtgg gttactggca
     6601 gtggcaccag caaaacggta ctaacccgtt atgcgacagt gcttaatcgg gttttgccag
     6661 tgccgacgca ggttgccagt gggcaatgtg tagaggtgga gctgtttgcc cgctatccgc
     6721 tgaagaaaat cacagcggaa aagagtacga cggcagtaaa acccggcgta cttaatgggc
     6781 gctatcgtgt gacgtttact aatggtaacc acattacgtt tgtcagccac ggtgagacga
     6841 ccttactgag cgaaaagggc aaactgaaat tgcagtcgca tctcgatcgt gaagagtacg
     6901 ttgccagagt tctggatcgc gaggcgaaaa gtacgccccc tgaggcagcg aaagccatga
     6961 ccgtggcgat tcacactttt ttacagcaaa acgccaatcg ggaaggcgat tgcctgacca
     7021 tccccgacag cagcgccacg cagcgtgttt ctgcttcgcc agcgaccacg ggggcgcgaa
     7081 cgatgaccgc ctggacgcag gatctcatct atgcaggcga tccggttcat tatcatggca
     7141 gtcgagctac cgaagggaca ctttcctggc ggcaagccac ggcccaggcg gggcagggag
     7201 agcgttacga ccagatactc gcgtttgctt atcccgacaa cagccttagc cgctggggag
     7261 cgccacgctc aacctgccag ttattaccca aagcgaaagc ctggctggcg aaaaaaatgc
     7321 cgcagtggcg gcgtatatta caaggcgaga cggggtacaa cgaaccagac gtgtttgcgg
     7381 tctgtcgttt agtctcaggt ttcccctata ccgatcggca gcagaaacgg ctgtttattc
     7441 gtaacttctt tacgcttcag gatcggctgg atttaaccca tgagtatctg cacctggcct
     7501 ttgatggtta tcccaccggg cttgatgaga actatatcga aacgctgacc cgacaattat
     7561 taatggacta atgctatgcg aaagattttt cttccgttgt tactggtggc actttcgcct
     7621 gtcgctcaca gtgaaggtgt gcaggaagtc gagattgacg caccgctctc tggctggcat
     7681 ccggcagagg gcgaagatgc cagtttttca caatcgatca attacccggc gtcgtccgtc
     7741 aacatggcag atgatcaaaa tatctcagcg cagatccgcg gcaaaataaa gaattatgct
     7801 gcggcgggta aaattcagca gggccggctg gtggtcaacg gtgccagtat gccgcagaga
     7861 gttgaatccg atggttcatt tgcacgccct tatattttca ctgaaggcag caacagcgtg
     7921 caggtcatca gcccggatgg gcaaagccga caaaaaatgc agttttactc aacgccgggt
     7981 acaggaacga ttcgtgcacg tttacggctg gttctctcgt gggatacgga caataccgat
     8041 ctcgatctcc atgttgtcac gcccgatggc gaacacgcct ggtacggtaa caccgtgctg
     8101 aaaaacagtg gtgcactgga tatggatgtc acgacggggt acggacccga gattttcgcc
     8161 atgccagcgc cagttcacgg acgctatcag gtgt
//
LOCUS       DADMJB010000174         8147 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.177, whole genome shotgun sequence.
ACCESSION   DADMJB010000174 DADMJB010000000
VERSION     DADMJB010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8147)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8147)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8147
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.177"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            66..260
                     /locus_tag="JN078_003552"
     CDS             66..260
                     /locus_tag="JN078_003552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005009814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="melibiose carrier protein"
                     /protein_id="HAY9042618.1"
                     /translation="MQFIMIALPTLFFMVTLILYFRFYRLNGDTLRRIQIHLLDKYRK
                     VPPEPVHADIPVGAVSDVKA"
     gene            complement(399..1028)
                     /locus_tag="JN078_003553"
     CDS             complement(399..1028)
                     /locus_tag="JN078_003553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2238 domain-containing protein"
                     /protein_id="HAY9042619.1"
                     /translation="MTRTLKPLILNTGALALTLILIYTGISAHDKLTWLMEVTPVIIV
                     VPLLLATARRYPLTPLLYTLIFLHAIILMVGGQYTYAKVPVGFEVQEWLGLSRNPYDK
                     LGHFFQGLVPALVAREILVRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQ
                     GADDFLGTQGDQWDTQSDMFCALLGALTTVIFLARFHCRQLRRFGLITG"
     gene            complement(1151..2797)
                     /locus_tag="JN078_003554"
     CDS             complement(1151..2797)
                     /locus_tag="JN078_003554"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I fumarate hydratase"
                     /protein_id="HAY9042620.1"
                     /translation="MSNKPFIYQAPFPMGKDNTEYYLLTSDYVSVADFDGETILKVEP
                     EALTLLAQQAFHDASFMLRPAHQKQVAAILHDPEASENDKYVALQFLRNSEIAAKGVL
                     PTCQDTGIAIIVGKKGQRVWTGGGDEEALSKGVYNTYIEDNLRYSQNAALDMYKEVNT
                     GTNLPAQIDLYAVDGDEYKFLCVAKGGGSANKTYLYQETKALLTPGKLKNFLVEKMRT
                     LGTAACPPYHIAFVIGGTSAETNLKTVKLASAHYYDELPTEGNEHGQAFRDVQLEQEL
                     LEEAQKLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINREGIW
                     IEKLEHNPGQYIPQELRQAGEGEAVKVDLNRPMKEILAQLSQYPVSTRLSLTGTIIVG
                     RDIAHAKLKELIDAGKELPQYIKDHPIYYAGPAKTPAGYPSGSLGPTTAGRMDSYVDL
                     LQSHGGSMIMLAKGNRSQQVTDTCHKHGGFYLGSIGGPAAVLAQQSIKHLECVAYPEL
                     GMEAIWKIEVEDFPAFILVDDKGNDFFQQIVNKQCANCTK"
     gene            complement(2875..4215)
                     /locus_tag="JN078_003555"
     CDS             complement(2875..4215)
                     /locus_tag="JN078_003555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HAY9042621.1"
                     /translation="MLFTIQLIIILICLFYGARKGGIALGLLGGIGLVILVFVFHLQP
                     GKPPVDVMLVIIAVVAASATLQASGGLDVMLQIAEKLLRRNPKYVSIVAPFVTCTLTI
                     LCGTGHVVYTILPIIYDVAIKNNIRPERPMAASSIGAQMGIIASPVSVAVVSLVAMLG
                     NVTFDGRHLEFLDLLAITIPSTLIGILAIGIFSWFRGKDLDKDEEFQKFISVPENREY
                     VYGDTATLLDKKLPKSNWLAMWIFLGAIAVVALLGADSDLRPSFGGKPLSMVLVIQMF
                     MLLTGALIIILTKTNPASISKNEVFRSGMIAIVAVYGIAWMAETMFGAHMSEIQGVLG
                     EMVKEYPWAYAIVLLLVSKFVNSQAAALAAIVPVALAIGVDPAYIVASAPACYGYYIL
                     PTYPSDLAAIQFDRSGTTHIGRFVINHSFILPGLIGVSVSCVFGWIFAAMYGFL"
     gene            complement(4786..5505)
                     /gene="dcuR"
                     /locus_tag="JN078_003556"
     CDS             complement(4786..5505)
                     /gene="dcuR"
                     /locus_tag="JN078_003556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DcuR"
                     /protein_id="HAY9042622.1"
                     /translation="MSNVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIF
                     NSDTPIDLILLDIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVD
                     YLIKPFQASRFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLT
                     PQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTG
                     RPVYRYRIQAEHYSLLKQYCQ"
     gene            complement(5502..7133)
                     /gene="dcuS"
                     /locus_tag="JN078_003557"
     CDS             complement(5502..7133)
                     /gene="dcuS"
                     /locus_tag="JN078_003557"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DcuS"
                     /protein_id="HAY9042623.1"
                     /translation="MRHSLPYRMLLKRPMKLSTTVILMVSAVQFSVLLVVHLIYFSQI
                     SDMTRDGLANKALAVARTLADSPEIRQGLQKKPQESGIQAIAEAVRKRNDLLFIVVTD
                     MQSLRYSHPEAQRIGQPFKGDDILKALNGKENVAINRGFLAQALRVFTPIYDENHKQI
                     GVVVSGLELSRVTQQINDSRWSIIWSVLFGMLVGLIGTCILVKVLKKILFGLEPYEIS
                     TLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQV
                     VDVSEVLRDGTPRRDEEITIKDRLLLINTVPVRSNGVIIGAISTFRDKTEVRKLMQRL
                     DGLVNYADALRERSHEFMNKLHVILGLLHLKSYKQLEDYSLKTANNYKEEIGSLLGKI
                     KSPVIAGFLISKINRATDLGHTLILNSESLLPDSGSEDQVATLITTLGNLIENALEAL
                     GPEPGGEISVTLHYRHGWLHCEVNDDGPGIAPDKIDHIFDKGVSTKGSERGVGLALVK
                     QQVENLGGSIAVESEPGIFTQFFVQIPWDGERSNR"
     gene            7314..7544
                     /gene="yjdI"
                     /locus_tag="JN078_003558"
     CDS             7314..7544
                     /gene="yjdI"
                     /locus_tag="JN078_003558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S mono-cluster protein YjdI"
                     /protein_id="HAY9042624.1"
                     /translation="MDQALLDEGYRCYTGEKIDVYFNTAICQHSGNCVRGNGKLFNLK
                     RKPWIMPDEVDVVTVVKVIDTCPSGALKYRHK"
     gene            7556..7828
                     /locus_tag="JN078_003559"
     CDS             7556..7828
                     /locus_tag="JN078_003559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HAY9042625.1"
                     /translation="MEIREGHNKFYINDEQGKQIAEIVFVPTGENLAIIEHTDVDESL
                     KGQGIGKQLVAKVVEKMRREKRKIIPLCPFAKHEFDKTREYDDIRS"
     gene            8055..>8147
                     /gene="ghoS"
                     /locus_tag="JN078_003560"
     CDS             8055..>8147
                     /gene="ghoS"
                     /locus_tag="JN078_003560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type V toxin-antitoxin system endoribonuclease
                     antitoxin GhoS"
                     /protein_id="HAY9042626.1"
                     /translation="MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLM"
BASE COUNT         2021 a         1969 c         2085 g         2072 t
ORIGIN      
        1 cggttgtgtt agggatgatt ggctatgtac cgaatgttga acagtctacg caagccctat
       61 taggtatgca gtttattatg attgctctac caactctgtt tttcatggta acgctgattc
      121 tctacttccg tttctatcgc ctcaatggtg acacgctgcg caggatccag atccatctgc
      181 tggataaata tcgcaaagta ccgcccgagc ctgttcatgc tgatattccg gtcggtgcag
      241 tgagtgatgt gaaagcctga cgtggacaat agctaacgaa aatggcctga tgcgatatgt
      301 ttatcaggcc acgtcttaat gtaatgcttt ggatttgcaa attttgtaga ccggataagg
      361 aattcacgct gcatccggca tcaacaaagc gcacgttgtt atccggttat caagccaaag
      421 cgccgtagct ggcggcaatg aaagcgagcg aggaatatca ccgtcgttaa tgcgccaagc
      481 agcgcgcaga acatatcgga ttgcgtgtcc cactggtcgc cctgggtgcc gagaaaatca
      541 tccgctccct gacccattgc cagcgccgcc caccactcga ttaattcata cattgcgctt
      601 atcgccagcg ccacgcagca gactaggaac gccaccattt tacgtccgcg cacgtacatc
      661 ccgcgaacga gaatttctcg tgccaccagt gcaggcacca gcccctggaa aaagtgcccc
      721 agcttgtcat acggattacg gctcaacccc agccattcct gcacctcaaa accaacgggg
      781 actttcgcgt aggtgtattg tccgccgacc atcaggatga tggcgtgaag gaaaatgagc
      841 gtatagagca gcggcgttaa cggataacgt ctggcggtgg caagcagtag cggcacgaca
      901 ataatcaccg gtgtcacttc catcagccag gtgagtttgt catgggccga aatgccggta
      961 taaatcagga ttaatgttag cgccagtgcg ccggtgttaa gaattaacgg cttgagtgtg
     1021 cgggtcatgg tgagttcgca aatcagggaa aatactgact attcaccagc aagcgtgaaa
     1081 ttacaatcgc aaaagaggtg gcccaggggg atcacctggc agcatgctgc caggcgctgg
     1141 gccgaagagg ttacttagtg cagttcgcgc actgtttgtt gacgatttgc tggaagaagt
     1201 cgttaccttt gtcatcgacc aagataaacg ccgggaaatc ttctacttcg attttccaga
     1261 tagcttccat acccagctcc ggataagcga cgcattccag atgcttgatg ctctgctgcg
     1321 ccagtaccgc cgccggaccg ccgatgctac cgaggtagaa gccgccgtgt ttatgacacg
     1381 tgtcggtaac ctgctgactg cggttacctt tcgccagcat gatcatgctg ccgccgtggg
     1441 attgcagcag atccacgtag gagtccatac ggcctgcggt ggttgggcca agtgaacctg
     1501 atggataacc ggcaggggtt ttcgccggac ccgcgtagta gatcgggtga tctttgatgt
     1561 actgcggaag ttctttaccg gcgtcaatca gctctttcag cttggcgtgt gcaatatctc
     1621 ggcccacgat aatggtgccg gtgagcgaca aacgagtgga taccgggtat tgcgaaagct
     1681 gggcgaggat ctctttcatc gggcggttaa ggtcaacttt caccgcttcg ccttcaccgg
     1741 cctggcgcag ttcttgtgga atgtactggc ctgggttgtg ttccagtttt tcgatccaga
     1801 taccttcgcg gttgattttc gctttaatgt tacggtcagc ggagcaggag acgcccatgc
     1861 cgaccgggca ggatgcgccg tgacgtggca gacggataac gcgaatgtcg tgcgcgaagt
     1921 atttaccgcc aaactgtgcg ccaagaccga gtttctgggc ctcttccagc agttcctgtt
     1981 ccagctggac atcgcggaac gcctgaccat gttcgttccc ttccgtcggc agttcatcgt
     2041 aatagtgagc gcttgctaac ttgacggttt tcaggttggt ttccgcagac gtaccgccaa
     2101 tcacaaacgc gatatggtac ggcgggcagg ctgcagtacc gagggtacgc attttctcga
     2161 cgaggaagtt tttcagtttg ccgggagtca gcagggcttt ggtttcctgg tagagatacg
     2221 ttttgttggc agagccgccg cctttcgcaa cgcaaaggaa tttgtactca tcgccatcta
     2281 ccgcgtacag gtcgatttgc gcaggcaggt tagtgccggt gttgacctct ttgtacatgt
     2341 ccagcgccgc attctgtgaa tagcgcaggt tatcttcgat ataggtgtta tagacgcctt
     2401 tcgacagcgc ttcttcatca ccgccgccgg tccacacgcg ctggcctttt ttaccgacga
     2461 tgatcgcgat gccggtatcc tggcaggtcg gcagcacgcc tttggcggcg atttcggaat
     2521 ttcttaagaa ttgcagcgcc acgtacttgt cgttttcgct ggcttctgga tcgtgaagaa
     2581 tagccgcaac ctgtttctgg tgtgccgggc ggagcataaa agaagcgtcg tgaaaggctt
     2641 gctgcgccag cagggtcagg gcttctggtt ccactttcag gatggtttcg ccgtcgaagt
     2701 cggcaacgct aacgtaatcg gaagtgagta gatagtattc ggtattgtct ttccccatcg
     2761 ggaaaggtgc ctggtagata aagggtttgt ttgacatagc ttccagcctg taactctgta
     2821 tttgttattc gaaaatggcg tgccgcgtag tcacgggcgg cacgcaaagt gcatttataa
     2881 gaacccgtac atcgcggcga agatccagcc gaagacgcac gatacgctca caccaatcaa
     2941 ccccggcaga ataaagctgt ggttgatgac gaagcgaccg atgtgggtgg tgccggaacg
     3001 gtcaaactga atcgctgcca gatcgctcgg ataagtcggc aggatgtaat aaccgtagca
     3061 agccggtgct gaagccacga tgtatgccgg atcaacgccg atcgccaacg cgaccggaac
     3121 aatcgccgcc agcgccgcag cctgagagtt tacaaacttg gaaaccagca gcagaacaat
     3181 ggcataggcc cacggatact ctttcaccat ttcacccagt acgccctgaa tttcagacat
     3241 atgcgcaccg aacatggttt ctgccatcca tgcgataccg tacaccgcca cgatggcgat
     3301 cataccggaa cggaagactt cgttttttga gatagacgcg ggattggttt tggtcaggat
     3361 aataatcagc gccccggtca gcagcataaa catctgaata accagtacca tcgacagcgg
     3421 tttgccgccg aaggatggac gcaggtccga atcagcacca agaagggcga ctacagcgat
     3481 tgccccgagg aaaatccaca ttgccagcca gttgcttttc ggcagttttt tatccagcag
     3541 cgtcgcggta tcaccgtaaa catactcacg gttttccggt acggagatga atttctggaa
     3601 ctcttcgtct ttatccagat ctttaccacg gaaccagctg aagataccga tcgccaggat
     3661 accgattaac gtcgatggaa tggtgattgc cagcaggtcg aggaactcaa gatggcgacc
     3721 atcaaaggtg acattaccca gcatcgcaac cagagacacg accgcaaccg acaccggact
     3781 ggcgataatc cccatctgtg caccgataga acttgccgcc atcggacgtt ccggacggat
     3841 gttgttctta atggcgacgt cgtagatgat cggcagaatg gtgtaaacca catgacccgt
     3901 accgcaaaga atggtcagcg tacaggtcac aaacggcgcg acaattgaga catatttcgg
     3961 gttgcggcgc agcaacttct cggcaatttg cagcatgaca tcaagaccgc ccgaagcttg
     4021 caaggtcgcc gatgccgcca ccaccgcaat gataaccagc atgacatcaa ccggtggttt
     4081 acctggctga aggtggaaga cgaagaccag aatgaccaga ccgataccgc ctaataaacc
     4141 cagcgcgata ccaccctttc tggcaccata aaacagacat atcagtatta tgataagttg
     4201 gatagtaaat aacatgtgtg aaccctcgcg ataatcctat ttaaattttt gctgaataga
     4261 tcacagtcac gttctgtttt gtatgaactg ttttcagagc ctgactaaat atccgtttgg
     4321 tcgttaccgg ctttagcaaa tacctcacag taaatattgg ctgattaaag cagcggcaaa
     4381 tttatgcact gtgataagcg gctttttcag agagaaaaac tctctggcga tgggtttata
     4441 gtttgtactg cgcagatgtt aatgttttgt ttgctgttat cttattgata tttatcggtc
     4501 tattttttgt tctcagggca gatatcatta ggtttaaaga ttaatcttat ctacccattt
     4561 gtgggtgaaa atacacataa tgcgggtgac ataatagtta attaactttt gttagcgttt
     4621 tgaaattaaa aacaccgttc acctgaagag atattaattt ttagcgatga tggagggata
     4681 attatatttg atctggcaca agttttactg atgaaggatg taacttgtgc caggggtatt
     4741 ttgcattacg gtaataatta ttacttacag ataaccagcg atccgttatt ggcaatattg
     4801 tttcagtagt gagtagtgtt ctgcctgaat acggtaacgg taaaccggac gccccgtgac
     4861 gccataatgg atactggtga acaagatgtg gcagttgacc agccagatga ggtatttacg
     4921 gcaggaaaca cgcgagatgt taacctcgtt agccagctcg tcggttgaaa actcatagtc
     4981 ctgatgcgcg tcaatccact ggcacagcgt gcgtaacgtc tgcggcgtta agccttttgg
     5041 caagcgacga ggatcctgtt cgttggagct gctgccgtgg attagctgat caagctcggc
     5101 ctggtcataa tactgatgtt tttccagcgc cattttcttt tgccgccagc cggtgagcgc
     5161 ctcttcaaag cgggaagcct ggaagggttt gatcaggtaa tccacgacac cgtaatgcag
     5221 cgaatcttta atggttgccg catcggctgc ggaggagatg acaatcacat cacttttgca
     5281 acgcgcgtta tgcaggacag gcagtaaatc gagcccgttc tctttttgca tatagatatc
     5341 gagcaatatc aggtcgatag gcgtatcgct attgaagata atctctttgg ctttctccag
     5401 cgtcgaggct gttccacagc attgaaagcc tgggatttgt gctacgtatc ggcgattcag
     5461 ctccgcgacc attgcgtcgt catcgataat taatacattg ctcatctgtt tgacctctcc
     5521 ccgtcccagg gtatctggac aaaaaattgt gtgaaaatcc cgggttccga ttccacggcg
     5581 atgctgccgc cgagattttc tacctgttgt ttgacaagtg ctaaaccgac gcctcgctcg
     5641 cttccttttg tcgagacacc tttgtcaaaa atgtgatcga ttttgtcggg tgcgatcccc
     5701 ggtccatcat cgttaacttc gcagtgcagc cagccgtgac ggtagtgcaa tgttacgcta
     5761 atttcgccac cgggttccgg ccctaatgct tccagcgcgt tttctatcag atttcccaat
     5821 gtggtaatca gcgtcgcgac ctggtcctca ctgccgctgt ctggcagcag gctttcactg
     5881 tttaaaatca gcgtatggcc taaatcggtc gcgcggttaa tcttgctgat taaaaaacca
     5941 gcgataaccg gagatttgat cttacccagc agagagccaa tctcttcctt atagttattg
     6001 gctgttttga gactgtaatc ttccaactgc ttataactct tcagatgcaa taatccgaga
     6061 atcacatgca atttattcat aaattcgtgg gatcgttcac gaagtgcatc agcatagttg
     6121 accagaccgt cgagtcgctg catcagttta cgaacttcag ttttgtccct gaaggttgaa
     6181 atggcaccga tgataacgcc attactgcgc accggaacgg tgttgatcag taatagccgg
     6241 tctttaatcg taatctcttc gtcgcggcgc ggcgtaccgt cgcgtaacac ttccgagaca
     6301 tctaccacct gtgaccatga gtggcttagc gtcgacagtt tctcatcgtc ctgcgactta
     6361 cggtaattca gcaattcttg tgcggcatcg ttgatcagcg tgacctcgcc gcgatcgtcc
     6421 acggcaacga cgccttcttt gatagactgc aacatggcct ggcgctgctc aaacagcgtg
     6481 gagatttcgt agggttccag gccgaaaagg atttttttca gtaccttaac cagaatgcag
     6541 gtgccaatca gtccgaccag catgccaaat aataccgacc agataatgct ccagcgactg
     6601 tcattgattt gttgggtcac gcggcttaac tcaaggccgc tcaccaccac gccaatttgt
     6661 ttatgatttt catcgtagat gggggtaaat acgcgtaaag cctgcgccag aaaaccgcga
     6721 ttgatagcga cattttcttt gccattcagc gctttaagga tgtcatcacc tttaaatggc
     6781 tgaccaatac gctgggcttc aggatgcgag tagcgaagac tttgcatatc cgtaacgaca
     6841 ataaacagca gatcgttgcg tttgcgcacg gcttccgcga tggcctggat tccgctctcc
     6901 tgcggttttt tctgcaagcc ctgacggatt tccggcgagt cggcgagggt acgcgccact
     6961 gccagtgcct tgttggccag cccgtctcgt gtcatatcac tgatttgcga gaagtaaatc
     7021 agatgcacca ccaatagcac cgagaactgt accgcgctga ccattaagat cactgtggta
     7081 ctcaatttca tcggacgttt gagtaacatg cggtagggca atgaatgtct catcagcttc
     7141 cttgtgtgac aaatttctta agcattatct ctgatgaggc gggtaattca aagggcgtaa
     7201 gaatgattgg ctatataggg gaagagactc tggcaacgga aactgccagt gctgtatgaa
     7261 gattccaggg ctatgcttat agcgataatc atactgatga gagagggaaa gtcatggatc
     7321 aggcgctact ggacgagggt tatcgctgtt ataccggcga aaagatcgat gtctatttca
     7381 acactgcgat atgtcagcat tctggcaatt gcgtacgtgg caacggcaag ttatttaatc
     7441 tcaaacgaaa gccgtggatc atgccggatg aagtcgacgt cgtcactgtg gttaaagtga
     7501 ttgatacgtg cccgagcggc gcgctgaaat accgtcataa ataagcgagg gtaaaatgga
     7561 aatacgcgaa ggccacaata aattttacat taatgacgaa cagggcaagc aaatcgctga
     7621 aattgtcttt gtgccgaccg gagagaattt agcgattatc gaacataccg atgtcgatga
     7681 aagcctgaaa gggcagggga ttggtaaaca gctggttgcg aaagtcgtgg aaaaaatgcg
     7741 tcgggaaaaa cgaaaaatta tcccactatg cccatttgcg aaacacgaat ttgataaaac
     7801 gcgggagtat gatgatattc gcagttgatg ggagagtaca gagtcacgat atttttcatg
     7861 ctctccgcgg agtgatgcag gagagcatct gaagggtagg gggatgcaca aagaatgggc
     7921 agagagcgcg tttttttgtc ccacgtcatc ccctttactg agcaaaaaaa agaatatctc
     7981 ctatatgaga atcatcaatc ggggttaata agttttgcgt ccccagagca ttcaatattg
     8041 ataggagtca tattatggaa ggtaaaaaca agttcaatac ttatgttgtt tcttttgatt
     8101 atccatcatc ttattcctca gtgttcttaa ggttaagatc attgatg
//
LOCUS       DADMJB010000175         7935 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.178, whole genome shotgun sequence.
ACCESSION   DADMJB010000175 DADMJB010000000
VERSION     DADMJB010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7935)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7935)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7935
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.178"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            166..417
                     /locus_tag="JN078_003561"
     CDS             166..417
                     /locus_tag="JN078_003561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000192401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042627.1"
                     /translation="MTQKRRDRTEPKYKALDMTEHTLKVAIRTIDRHTREGYAKEHPD
                     LISAFMTTAAANFATLTEREIAEAEQVTTINVKTGEVEL"
     gene            414..824
                     /locus_tag="JN078_003562"
     CDS             414..824
                     /locus_tag="JN078_003562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HAY9042628.1"
                     /translation="MTAQIAAYGRLVDDPQVKQTSKGTPMTLARMAVSLPCSQAQDGQ
                     ATLWLSVIAFGKQADFLAKHQKGDVASVSGTMQVSQWTGQNGETRQGWQVIADSVISA
                     RAARPGGNRRKTTGTQGNQPPAGGDDPYGDDISF"
     gene            835..1107
                     /locus_tag="JN078_003563"
     CDS             835..1107
                     /locus_tag="JN078_003563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PerC family transcriptional regulator"
                     /protein_id="HAY9042629.1"
                     /translation="MVHDRIAEELEAKGFYRRAAARWGEVMQLVETDKERHHITMRRL
                     ECSRKAQRAPEPPDNFGDLKKAVDRTYAEMGIDGAGDEIWRNYQDS"
     gene            1233..1457
                     /locus_tag="JN078_003564"
     CDS             1233..1457
                     /locus_tag="JN078_003564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309616.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042630.1"
                     /translation="MPMKFDEILKQRDKYHADNMETMSINDYRAFLETGALIEKDQHG
                     FVRCALSGEMLAVNPEQIDALIEFLKEIRD"
     gene            1709..1915
                     /locus_tag="JN078_003565"
     CDS             1709..1915
                     /locus_tag="JN078_003565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000796968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042631.1"
                     /translation="MAEEKKGGVSVYISPEIVEVLKQRHKKNYEAGVAAGLDPLMTPE
                     PSIGSLVRSYLLAALGMHKNYGGE"
     gene            1915..2970
                     /locus_tag="JN078_003566"
     CDS             1915..2970
                     /locus_tag="JN078_003566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HAY9042632.1"
                     /translation="MAGKATALNTNQLFMYLNRGDIADFKFSPLFTTLFFPNVATFST
                     QNIMLDTLDIEEVTMSAFCSPMVGSQVQRDKGYETSTIKPGYMKPKHEIDPTKTIMRM
                     AGEDPAQLNDPTYRRMRLITGNMRRQINAIKARVEWLAVNAVTTGKNIIEGEGIERYE
                     IDWKIPEKNIIEQSDGKKWSEHDKDIYDPIYDIELYADQAGCPANVMIMGAEVWRTLR
                     SFKKFRELYDLSRGSESAAEMACKNLGEVVSFKGYLGDIALIVYSGKYTDSDGTEKYF
                     LEPDLLVLGNTNNKGLVAYGAIMDQEAVRTGATQNMYYPKNWIEDGDPAIEYVQTHSA
                     PQPVPADIRKFVTVKIG"
     gene            2982..3317
                     /locus_tag="JN078_003567"
     CDS             2982..3317
                     /locus_tag="JN078_003567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000380885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head decoration protein"
                     /protein_id="HAY9042633.1"
                     /translation="MDTPYIELFAGSQQVSTTLVHFAADAGVIQEFTPLMLVDNGEFK
                     PWDGQESGKAVYLTSYLVDTSKQKSAQCYKTGIFNIAAVNWPESVDTDAKKCAAFAGS
                     GVSVQPLAR"
     gene            3330..3743
                     /locus_tag="JN078_003568"
     CDS             3330..3743
                     /locus_tag="JN078_003568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head-tail connector protein"
                     /protein_id="HAY9042634.1"
                     /translation="MATNESIMALPLASKFKAEARAMADRGLSTYEAVYQLNKLEEQD
                     KPRADAIMALHEHKDYQPLLRAMANVPCIDVDTAKNILNMTIEQERPKVAPELTAAFE
                     NFMDMHSPQTVSAGMAYDGRNPGDDGDIDRILKTI"
     gene            3905..4339
                     /locus_tag="JN078_003569"
     CDS             3905..4339
                     /locus_tag="JN078_003569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000565611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042635.1"
                     /translation="MIDKACFVSQQEIAEHFKVNRTTIRAWTKQGMPYLNADRGKSGG
                     YHIGHTLLWSSGKSRLEAIRYHVETSALEKIMFARLLSSERDEYSSEETEHRFDEGLQ
                     IYGYSPEDVSKARNKMAGFLAGWRHAVSVRRASMEQSADTEQ"
     gene            4620..4901
                     /locus_tag="JN078_003570"
     CDS             4620..4901
                     /locus_tag="JN078_003570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042636.1"
                     /translation="MTEAEILGLIRRAGGISQQTDEQATQPDSVTAENYARVVAEVMR
                     RDGIQLNDVDMRNIRIRVLEMLAYNRRVALYRETEKITYHWKKPERLRR"
     gene            complement(5579..>7935)
                     /gene="yejO"
                     /locus_tag="JN078_003571"
     CDS             complement(5579..>7935)
                     /gene="yejO"
                     /locus_tag="JN078_003571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311108.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="autotransporter YejO"
                     /protein_id="HAY9042637.1"
                     /translation="GGYQYIEMNGTAEYSVLNDGYQIVQMGGAANQTTLNNGVLQVYG
                     AANDPTIKGGRLIVEKDGITVLAAIEKGGLLEVKEGGLAIAVDQKAGGAIKASTRVME
                     AFGINRLGQFEIKNGIANNMLLENGGSLRVEENDFAYNTTVDSGGLLEVMDGGTATGV
                     DKKAGGKLIVSTNALEVSGTNSKGQFSIKDGVSKNYELDDGSGLIVMEDTQAIDTILD
                     EHATMQSLGKDTGTKVQANAVYDLGRSDQNGSITYSSKAISENMVINNGRANVWAGTM
                     VNVSVRGNDGILEVMKPQINYAPAMLVGKVVVSEGASFRTHGAVDTSKADVSLENSVW
                     AIIADITTTNQNTLLNLANLAMSDANVIMMDEPVTRSSVTASAENFITLTTNTLSGNG
                     NFYMRTDMANHQSDQLNVTGQATGDFKIFVTDTGASPAAGDSLTLVTTGGGDAAFTLG
                     NAGGVVDIGTYEYTLLDNGNHSWSLAENRAQITPSTTDVLNMAAAQPLVFDAELDTVR
                     ERLGSVKSVSYDTAMWSSAINTRNNVTTDAGAGFEQTLTGLTLGIDSRFSREESSTIR
                     GLFFGYSHSDIGFDRGGKGNIDSYTLGAYAGWEHQNGAYVDGVVKVDRFANTIHGKMS
                     NGATAFGDYNSNGAGAHVESGFRWVDGLWSVRPYLAFTGFTTDGQDYTLSNGMRADVG
                     NTRILRAEAGTAVSYHMDLQNGTTLEPWLKAAVRQEYADSNHVKVNDDGKFNNDVAGT
                     PGVYQAGIRSSFTPTLSGHLSVSYGNGAGVESPWNTQAGVVWTF"
BASE COUNT         2191 a         1932 c         1941 g         1871 t
ORIGIN      
        1 gccaaaatta gcccgctctc cctcactttt cgacctgtat acatcctcaa aagtgagggg
       61 taaaaaaata cttataaaac acacacatag aaaaaccgaa aatcccaact gcgacgaagt
      121 gagacgcttg aaaaagtgag gcgaaaaagt gagaggttgc gagaaatgac ccaaaaacgc
      181 agagacagaa cagagccaaa atataaagcg ttagacatga ctgagcacac cttaaaggtg
      241 gcaatcagaa cgatagaccg ccacacgcgg gaaggatacg cgaaggaaca tcccgacctg
      301 ataagcgcat tcatgaccac ggcggcggca aactttgcca cgctgacaga acgggagatt
      361 gccgaagcgg aacaggtaac aaccatcaac gttaaaaccg gagaggtgga attatgacgg
      421 cacagatagc cgcttacggg cggctggtgg acgacccgca ggtaaaacag accagcaagg
      481 gcacaccgat gacgctggcg cgtatggcgg tatctttgcc atgcagccag gcacaggacg
      541 gacaggcgac gttatggtta tcggtcatcg catttggcaa acaggccgac ttcctggcta
      601 aacatcaaaa aggcgatgtt gccagcgtat ccggcacgat gcaggtaagc cagtggaccg
      661 gacagaacgg agaaacgcgg cagggctggc aggttatcgc agacagcgta atcagtgccc
      721 gcgcggcacg tccaggcggg aacagacgca aaaccacagg cacacagggt aatcagccac
      781 cagcgggagg cgatgaccct tacggtgatg atatttcgtt ctgagggggt gacgatggta
      841 catgaccgca tagcggagga actggaggcg aaaggctttt accggagggc ggcggcgcga
      901 tggggtgaag tcatgcagct ggtggagaca gacaaggaac ggcatcacat cacgatgcga
      961 cggctggaat gttcaaggaa ggcacagagg gcaccggagc cgccggataa tttcggagac
     1021 ctgaaaaagg cagtcgatcg cacttatgcc gaaatgggta tagatggtgc tggtgatgaa
     1081 atatggcgca attaccagga cagctaatca aacagccgga gaaatccggc ttttttgcac
     1141 cagttgaaac ggtatggcgc attaccgggt tttcgtcacg gtcaggcata gttactatct
     1201 gaaacaaaca gacacaacag aggaaaaaaa caatgccgat gaaatttgat gagatattaa
     1261 aacagcgtga taaataccat gctgacaaca tggagacgat gagcatcaat gattaccgcg
     1321 cattcctgga gacgggcgca ctgattgaaa aggatcagca tggttttgtg agatgtgctc
     1381 tgtccggtga aatgctggcg gtaaatcctg aacagataga tgcattgata gaatttctga
     1441 aagagatcag agactgatcc agcacacagc acacatagcc ggagcaatcc ggcttttttg
     1501 cgcccaaaaa aagcccgata aggtcagagg gttcttatcg ggcttttgca tatgaggttt
     1561 ttggatgcac tggcgttcgt gatcgggata atcatttcat aatttgcaac ataactcaat
     1621 attattgcat aaaatgcaat tctgattata atcaggactg gataaacatc cagtcctgat
     1681 ttttttagtc gaagaggaat ttcttactat ggctgaagag aaaaaaggcg gtgtttcggt
     1741 gtacataagc cccgaaatcg tggaggtgct caagcagcgc cacaaaaaaa actatgaggc
     1801 tggcgtggcg gctggactgg atccgctgat gacgccggag ccgtcgatag gttcacttgt
     1861 acgctcttat ttacttgcgg cgcttgggat gcataaaaat tatgggggtg aataatggca
     1921 ggcaaagcaa cggcacttaa cactaaccag ctttttatgt acctgaatcg cggggatatt
     1981 gcggatttta aattcagccc tctgtttacc acgctgtttt tcccgaacgt ggcgacattc
     2041 agcacgcaaa acatcatgct ggataccctg gacattgaag aagtcaccat gtcggcgttt
     2101 tgttcgccta tggtgggtag ccaggttcag cgcgataaag ggtacgaaac cagcacaatc
     2161 aaacctggct acatgaagcc aaagcacgaa atcgatccaa cgaaaaccat catgcgcatg
     2221 gctggagaag atccggcaca gcttaacgac cctacctatc gccgtatgcg cctgattact
     2281 ggcaacatgc gccgccagat aaacgccatt aaggcacgcg tggaatggct ggcggtgaat
     2341 gcggtaacga ccggaaaaaa catcattgag ggcgaaggca tagaacgcta tgaaatcgac
     2401 tggaagatac cggaaaaaaa catcatagag cagtccgacg gcaaaaaatg gtccgagcat
     2461 gataaagata tttacgatcc aatctatgac atcgaactat acgcagatca ggcaggttgc
     2521 cccgccaacg tcatgattat gggcgctgag gtatggcgca cgttacgcag ctttaaaaaa
     2581 ttccgtgaac tgtacgatct ttcccgtggt tcagaatccg ccgcagaaat ggcctgtaaa
     2641 aacctgggcg aagtggtgag ctttaaaggc tatctgggcg atattgctct tattgtctat
     2701 tccggcaaat acactgacag cgacggcacc gaaaaatatt tccttgagcc tgatttgctg
     2761 gtcctgggca acaccaacaa taaagggctg gtggcctatg gtgcgattat ggatcaggaa
     2821 gcggtaagaa cgggcgcaac gcaaaacatg tactacccga aaaactggat tgaggacggc
     2881 gatccggcga ttgagtacgt gcagacacac agcgcaccgc agccggttcc ggcagatatt
     2941 cgcaaatttg ttaccgtcaa aattggttaa cgggggatta tatggacact ccatatattg
     3001 agttatttgc aggcagtcag caggtatcaa cgacactggt acattttgcc gctgatgctg
     3061 gcgttattca ggaatttacc ccgctgatgc tggtggacaa tggcgagttt aagccgtggg
     3121 atggtcagga atctggcaag gctgtttatc tgacttcgta cctcgtggac acgtcaaagc
     3181 agaaatcagc acagtgttac aagacgggga tattcaatat tgccgccgtt aactggcctg
     3241 agagcgtcga caccgatgcg aaaaaatgcg ccgcctttgc gggttctggc gtatccgttc
     3301 agccgctggc ccgataagca gggggaacga tggcaacgaa tgaaagcatc atggcgctac
     3361 cgctggcgag taaatttaaa gccgaagcgc gggcaatggc tgacagaggt ttatcaacct
     3421 acgaggccgt atatcaactc aacaaactgg aagagcagga caagccgcgc gctgatgcga
     3481 ttatggcgct tcatgagcat aaagactatc agccgctgtt gcgtgcaatg gcaaacgtgc
     3541 cttgtatcga tgttgatacg gctaaaaaca tcctgaacat gaccatagag caggaacgcc
     3601 cgaaggttgc accagagctt accgcagcct ttgaaaactt tatggacatg cacagcccac
     3661 aaaccgtatc agctggcatg gcatacgatg gcagaaaccc aggcgatgac ggcgacatcg
     3721 atcgcatact gaaaaccatc tgagacaagg ccggagaaat ccggcttttt tgcgggtcct
     3781 tcctggaatt atggcccgtt acggggcggc gacctcgcgg gttttcgcta tttatgacgt
     3841 ttttccgtga aggtgacacc accaccactt gattaatatt taaccatgca gttaaggtaa
     3901 cattatgatt gataaagctt gttttgtaag tcagcaggaa atagctgaac atttcaaggt
     3961 taacagaacc actattcgcg catggaccaa acaggggatg ccgtatctta atgcggatcg
     4021 cggaaagtct ggcggttatc acatcgggca tacattgctt tggtcttcag gtaaaagccg
     4081 tcttgaggcc atcagatatc acgtagaaac cagtgcgctg gaaaaaatta tgtttgccag
     4141 gctgctttca tctgagcgtg acgagtactc cagtgaagaa acagaacatc gatttgatga
     4201 aggtttgcag atttacggct attcaccgga agatgtgagc aaggcacgaa ataaaatggc
     4261 tggctttctg gctgggtggc gtcatgccgt aagcgttcgc cgtgccagca tggagcaatc
     4321 agccgataca gaacagtaaa gccgataact tgttaatcac tcgcagcaat gcatgtgatt
     4381 tgtgcacact ttcggttaac tggttcgatg tccggtttta gtgtctgttt tttgcgcatg
     4441 tccggttcat ggaaagcatg tttttatatt tttcatatgg ttaacttgta gagaaaccgg
     4501 acatggatcc cgaaaaattt tcataaatag tgaaaacgcg cgaggtcgcc gccccgtaac
     4561 gggtccataa ttccaggaag gacccgacga caccagacaa tcagaacgat aggtgcacaa
     4621 tgacagaagc cgaaatactg ggattaatcc gccgtgctgg tggaatcagc cagcagactg
     4681 acgaacaggc cacgcagccg gacagcgtga cagccgaaaa ttatgcgcgt gttgttgctg
     4741 aggtgatgcg ccgtgatggt atccagctta atgatgtgga tatgcgcaac atacggatcc
     4801 gcgttcttga aatgctggcc tacaatcgcc gcgtggcact gtatcgggaa acggagaaaa
     4861 ttacatacca ctggaagaag ccggagcggt tgcggcggta actggttgat attttcgaaa
     4921 ttcgccagcg gcgaacatcg gggaaaccag cctaacccgt tgatattttc gggaacctca
     4981 aattgaggag gtcggaaaca taacccgtca tattctggat gctgataatt accacgcagc
     5041 ccattaaggc ctaacccgtt gattctttcg gaaacagcca ttggcgtaat ccggcgcggt
     5101 aacttgctga acttaaagca aagcgcaaaa ttgcgctggc tggtgggcat gatgccgata
     5161 tggtgatccc cataacggaa atatccacca gcacggcaac ggcagaatag ccacaacaca
     5221 gaaaaaccac gaatatgggg tttttgttat ggcatgggca tgatgaccgc ccctgctctg
     5281 aatggtggaa atcaccacgc agatcatcca ccagcttcgt ttttataaat taaacatccg
     5341 ggaaaatccg accctgaatt gtgcattttt tcagcaaatc attttagtta tacgtttggt
     5401 tatacggttt aaaagttgaa tcatatacat tattttaaat catgaagtta cacgctcaat
     5461 taaactactc tcgtgaaaaa tcccaagaaa aaaccaacct ttacggttgg tttttttata
     5521 tctgcaatta atttgataaa cagaccgtga cacatcacag cctgtttatt ttctgttatc
     5581 agaacgtcca gaccactccc gcctgagtat tccacggcga ttctacccct gcgccattgc
     5641 catagctgac tgacaaatga ccgcttaacg tcggggtaaa cgatgacctt atcccagcct
     5701 gataaacgcc aggggttcca gccacatcat tattaaattt gccatcgtca ttaactttca
     5761 catggttaga atcggcgtat tcctgacgta cggcggcttt cagccagggt tccagcgtcg
     5821 taccattttg caggtccatg tgatagctta ccgccgttcc cgcttcagcg cgtaatatcc
     5881 gggtatttcc cacatcagcg cgcatgccgt ttgataacgt gtagtcctga ccatctgtgg
     5941 taaagccggt aaaggccaga tagggtctaa cactccacaa tccgtcaacc caacggaacc
     6001 cgctctcaac atgagcaccc gcgccgttac tattgtaatc gccaaacgct gttgccccat
     6061 tactcatctt gccatggatg gtgttggcaa aacggtcaac tttcaccacc ccatcaacat
     6121 aggcaccgtt ctgatgctcc caaccggcat aagcccccag ggtatagcta tcgatattac
     6181 cttttccgcc gcgatcaaaa ccaatatcag aatgagagta accaaagaac aagccgcgaa
     6241 ttgtactgct ttcttcacgg gagaaacggc tatcgatacc gagcgtcagg cccgtcaatg
     6301 tttgctcaaa accagctccc gcatcagtgg tcacgttgtt gcgggtgtta attgccgaac
     6361 tccacatcgc cgtatcgtaa ctaacgcttt ttacgctacc aagacgctca cgcacggtgt
     6421 ccagttctgc atcaaatacc agcggttgtg cggccgccat attcagcaca tcagtggttg
     6481 aaggggtaat ttgcgcgcga ttctctgcca aactccagct atggttgcca ttatccagca
     6541 aggtatattc atacgtaccg atatcaacaa cgcctccggc attgcccaac gtaaatgcag
     6601 catcaccgcc gcccgttgtt accagtgtaa ggctatctcc tgctgccggg ctggcaccgg
     6661 tgtccgtcac gaatattttg aaatcacctg ttgcctgacc ggtgacgttg agctgatcgc
     6721 tctgatgatt agccatatcg gtacgcatat aaaaattgcc gtttcccgac agggtattgg
     6781 tggtcaacgt aatgaaattt tccgcacttg ccgtcactga tgaacgagtc actggctcat
     6841 ccatcataat cacatttgcg tcagacatcg caaggttggc taagttgagg agggtgtttt
     6901 ggttcgtcgt agtgatatcg gcaatgatgg cccatacgct attttcgagc gaaacgtccg
     6961 ctttgctggt atccacggca ccatgcgttc taaaagaagc gccctcagaa accactacct
     7021 tacccaccaa catagcgggt gcataattta tttgcggctt catgacctca agaatgccat
     7081 cattccctct gactgacacg ttaaccattg tgccagccca gacattagcg cggccattgt
     7141 tgataaccat attttcagag atggctttag aggaatacgt gatacttcca ttctggtctg
     7201 atcgaccgag atcatatacc gcatttgcct gcactttcgt accagtatcc tttcccagcg
     7261 attgcatagt ggcatgctca tcaaggatag tatcaatggc ctgcgtgtcc tccataacaa
     7321 tgagcccgga accatcatcc agttcataat tttttgacac accatctttt atactaaatt
     7381 ggcctttact gtttgtacca ctcacttcca gcgcattcgt tgagacaatt aattttccgc
     7441 ctgctttttt atcaacgcca gttgcagtcc cgccatccat aacctccagt aagccgccac
     7501 tatctacagt agtattataa gcgaagtcat tttcttcaac tcgcaaactt ccgccgtttt
     7561 ccaacagcat attgttagca ataccattct tgatttcgaa ctgaccgaga cggtttattc
     7621 cgaatgcctc catgacccgc gtgcttgctt taatagcacc gcctgctttc tgatctaccg
     7681 caatcgctaa tcccccctct ttaacctcca gtaatcctcc cttttcgata gcggcaagga
     7741 cggtaatccc atctttttca acgattaagc gcccgccttt aatcgtggga tcattcgctg
     7801 cgccataaac ctgtagcaca ccattattga gggtagtctg gtttgccgcg ccacccattt
     7861 gaacaatttg ataaccgtca tttaatactg agtattctgc ggtaccattc atttcaatgt
     7921 actgataccc tccgt
//
LOCUS       DADMJB010000176         7818 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.179, whole genome shotgun sequence.
ACCESSION   DADMJB010000176 DADMJB010000000
VERSION     DADMJB010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7818)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7818)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7818
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.179"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            268..411
                     /locus_tag="JN078_003572"
     CDS             268..411
                     /locus_tag="JN078_003572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YobF family protein"
                     /protein_id="HAY9042638.1"
                     /translation="MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSMLCLRAK
                     KTI"
     gene            424..633
                     /gene="cspE"
                     /locus_tag="JN078_003573"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
     CDS             424..633
                     /gene="cspE"
                     /locus_tag="JN078_003573"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator/RNA stability
                     regulator CspE"
                     /protein_id="HAY9042639.1"
                     /translation="MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTL
                     AEGQNVEFEIQDGQKGPAAVNVTAI"
     gene            799..1608
                     /gene="rlmA"
                     /locus_tag="JN078_003574"
     CDS             799..1608
                     /gene="rlmA"
                     /locus_tag="JN078_003574"
                     /EC_number="2.1.1.187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (guanine(745)-N(1))-methyltransferase"
                     /protein_id="HAY9042640.1"
                     /translation="MSFSCPLCHQPLSREKNSYICPQRHQFDMAKEGYVNLLPVQHKR
                     SRDPGDSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHA
                     FADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK
                     AEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAELCY
                     PMRLRGDEAVALLQMTPFAWRAKPEVWQTLAAKEVFDCQTDFNIHLWQRSY"
     gene            complement(1605..2171)
                     /gene="mntP"
                     /locus_tag="JN078_003575"
     CDS             complement(1605..2171)
                     /gene="mntP"
                     /locus_tag="JN078_003575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP"
                     /protein_id="HAY9042641.1"
                     /translation="MNITATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFG
                     AVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRR
                     HGFWLLVTTAIATSLDAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGS
                     IIGKKAEILGGLVLIGIGVQILWTHFHG"
     gene            complement(2599..3057)
                     /locus_tag="JN078_003576"
     CDS             complement(2599..3057)
                     /locus_tag="JN078_003576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF986 domain-containing protein"
                     /protein_id="HAY9042642.1"
                     /translation="MTITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGR
                     IDSVIFVGLIVILIYNNVTNHGALITTWLLSALALMGFYIFWIRVPKIIFKQKGFFFA
                     NVWIEYSRIKAMNLSEDGVLVMQLEQRRLLIRVRNIDNLERIYKLIVLTQ"
     gene            complement(3112..3963)
                     /locus_tag="JN078_003577"
     CDS             complement(3112..3963)
                     /locus_tag="JN078_003577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020804907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HAY9042643.1"
                     /translation="MVDTTQTTTEKKLTQSDIRGVFLRSNLFQGSWNFERMQALGFCF
                     SMVPAIRRLYPENNEARKQAIRRHLEFFNTQPFVAAPILGVTLALEEQRANGAEIDDG
                     AINGIKVGLMGPLAGVGDPIFWGTVRPVFAALGAGIAMSGSLLGPLLFFILFNLVRLA
                     TRYYGVAYGYSKGIDIVKDMGGGFLQKLTEGASILGLFVMGALVNKWTHVNIPLVVSR
                     ITDQTGKEHVTTVQTILDQLMPGLVPLLLTFACMWLLRKKVNPLWIIVGFFVIGIAGY
                     ACGLLGL"
     gene            complement(3976..4776)
                     /locus_tag="JN078_003578"
     CDS             complement(3976..4776)
                     /locus_tag="JN078_003578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HAY9042644.1"
                     /translation="MEITTLQIVLVFIVACIAGMGSILDEFQFHRPLIACTLVGIVLG
                     DMKTGIIIGGTLEMIALGWMNIGAAVAPDAALASIISTILVIAGHQSIGAGIALAIPL
                     AAAGQVLTIIVRTITVAFQHAADKAADNGNLTAISWIHVSSLFLQAMRVAIPAVIVAL
                     SVGTSEVQNMLNAIPEVVTNGLNIAGGMIVVVGYAMVINMMRAGYLMPFFYLGFVTAA
                     FTNFNLVALGVIGTVMAVLYIQLSPKYNRVAGAPAQAAGNNDLDNELD"
     gene            complement(4839..5810)
                     /gene="manX"
                     /locus_tag="JN078_003579"
     CDS             complement(4839..5810)
                     /gene="manX"
                     /locus_tag="JN078_003579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HAY9042645.1"
                     /translation="MTIAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAET
                     LIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVDKEHYEVIAGVNIPMLVETL
                     MARDDDPSFDELVALAVETGREGVKALKAKPVEKAAPAPAAAAPKAAPTPAKPMGPND
                     YMVIGLARIDDRLIHGQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTA
                     HVVDVAKMIRVYNNPKYAGERVMLLFTNPTDVERLVEGGVKITSVNVGGMAFRQGKTQ
                     VNNAVSVDEKDIEAFKKLNARGIELEVRKVSTDPKLKMMDLISKIDK"
     gene            6273..>7818
                     /gene="yoaE"
                     /locus_tag="JN078_003580"
     CDS             6273..>7818
                     /gene="yoaE"
                     /locus_tag="JN078_003580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family cation transport protein YoaE"
                     /protein_id="HAY9042646.1"
                     /translation="MEFLMDPSIWAGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRD
                     KARLLGLSLALIMRLGLLSLISWMVTLTKPLFTVMDFSFSGRDLIMLFGGIFLLFKAT
                     TELHERLENRDHDSGHGKGYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAA
                     VVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAI
                     GFSIIIEVFNQIARRNFIRHQSTLPLRARTADAILRLMGGKRQANVQHDADNPMPIPE
                     GAFAEEERYMINGVLTLASRSLRGIMTPRGEISWVDANLGVDEIREQLLSSPHSLFPV
                     CRGELDEIIGIVRAKELLVALEEGVDVAAIASASPAIIVPETLDPINLLGVLRRARGS
                     FVIVTNEFGVVQGLVTPLDVLEAIAGEFPDADETPEIITDGDGWLVKGGTDLHALQQA
                     LDVEHLADDDDIATVAGLVISANGHIPRVGDVIDVGPLHITIIEANDYRVDLVRIVKE
                     QPAHDED"
BASE COUNT         1986 a         1912 c         1941 g         1979 t
ORIGIN      
        1 gcactatgta ataacttctc ccactggcct ggaacaactg aacttattga actatgttag
       61 aaaatacgcc agtttaagta tctgcctgaa ctggcaaggt taagcacaat gatatatcgg
      121 cgcgtattcc gttgcataag tgtgcaaaaa aagtggaaga cgtatcgaga tttgtgcgtc
      181 tgatcgagac atgtttaaaa atggcttgcc ataattaacg ttgtatgtga taacagattt
      241 cgggttaaac gaggtacagt tctgtttatg tgtggcattt tcagtaaaga agtcctgagt
      301 aaacacgttg atgttgaata ccgcttctct gccgagcctt atattggtgc ctcatgcagt
      361 aatgtgtcag ttttatctat gttatgcctg cgggcgaaga aaacaatcta aggaattttt
      421 caaatggcaa agattaaagg tcaggttaag tggttcaacg agtctaaagg ttttggcttc
      481 attactccgg ctgatggcag caaagacgtg ttcgtacact tctccgctat ccagggtaat
      541 ggcttcaaaa ctctggctga aggtcagaac gttgagttcg aaattcagga cggccagaaa
      601 ggtccggcag ctgttaacgt aacagctatc tgatcgaatc cactgatctg aagtgtgaat
      661 acgcttcaat ctcgctataa agcctcgtcg aatgcgaggc tttttactat gctttatctt
      721 cgctcctggc gttcggatat ttgcccgccg cgtgattcgc gttacacttg cggcctttag
      781 tatcctgccg gagttgtcat gtctttttcc tgtccacttt gccatcagcc tctttcgcgt
      841 gaaaaaaaca gctatatctg tccccagcga catcagtttg atatggcgaa agaagggtat
      901 gtcaatctgc tgcccgttca gcataaacgg tctcgtgatc cgggcgacag cgcggaaatg
      961 atgcaagcac gccgcgcatt cttagatgcc ggacattatc agccgctgcg tgatgcaatt
     1021 gtcgcccaac tgagggaacg gcttgatgat aaggccacgg cggtgctgga tattggctgt
     1081 ggtgaagggt attacacaca cgcatttgcc gatgcgttgc ccgaaatcac cacgtttggt
     1141 ctggatgttt cgaaggtagc gataaaagcg gcggcgaaac gctatccgca ggtcactttt
     1201 tgtgtcgctt ccagccaccg tttgccgttt tccgatacca gtatggacgc cataatacgt
     1261 atttacgcgc cgtgtaaagc agaagaatta gcacgagtag tgaagcccgg cggctgggtc
     1321 attactgcca cgccgggacc gcgacatttg atggagctga aggggctgat ttacaatgaa
     1381 gtacatcttc atgcacctca tgcagaacaa ctggaaggtt ttacattaca gcagagtgcg
     1441 gagttgtgtt atccgatgcg tcttcgcggt gatgaagctg tcgcattatt gcagatgacg
     1501 ccgtttgcct ggcgtgcgaa gccagaagtc tggcaaacac tggcagcaaa agaagtgttc
     1561 gactgccaga cggactttaa tattcacctc tggcagcgtt cttattaacc gtggaagtgc
     1621 gtccagagga tctggacgcc gatgccgatc agtaccagcc cgccgagaat ttccgctttt
     1681 ttcccaataa ttgagccgat aaagcgacca accatcatcc ctaatgttga cataatcaag
     1741 gttgcacaac caatggccaa tgcggtcgcg ataatgttga cctgcaggaa agcaagacca
     1801 acacccacag ccatggcatc caggctggtg gcaatcgcgg tggttaccag tagccagaaa
     1861 ccgtgtcgac ggcgcggctc ttcatcttca tcatctgcgc cacgaaaacc ctcaataatc
     1921 attcgcccgc cgaggaatat cagcagcaca aacgcaatcc agtggttcca ttcaaggaca
     1981 aaccggctgg ctaacatgcc cattccccag ccgatcagcg gcgtcagggt ttcgacggca
     2041 ccaaaaataa ggccggttcg caatgcttca gaaaatttcg gtttatggag ggtggcacct
     2101 ttaccgattg atgcagcaaa tgcatccatc gacataccaa acgcaagaag aacagtagca
     2161 gtgatattca tgacaatgtc ctgaccgggg tatccataaa acacatcatc gcccccagca
     2221 aacatgcata catgaacaac aagccgtgat ggtttttgcg ttcatgcagg catagcgatt
     2281 gatgtgcata tggtctcgcc tgactgaaag tattcagtcc gtacgtgcca cgttttgcaa
     2341 cgagtatgtt gacacgtaca tttccggaat ctggaaatcg gctactcccc aaatgagggc
     2401 gcaaccttaa catattttga gaatataaaa caactgttgg aatatattat ttcattgctt
     2461 tattgataac gaattcattt agatttatat atcaatgaaa cgttaaaata aataacaaat
     2521 aagggaagag gtaatatagc ctaagctatg tctgattatt aaaaatacac taaacatagc
     2581 tttggctaaa ttcataactt attgagttaa aacgataagc ttataaattc tttccagatt
     2641 gtcgatattt cgaacgcgga ttaacagccg acgctgttct aattgcatca ccaacacgcc
     2701 atcttccgac aagttcatcg ctttgattcg gctatattca atccagacat tggcgaagaa
     2761 aaaacctttt tgtttaaaga tgatcttcgg aacgcggatc cagaatatat aaaaacccat
     2821 cagagccagt gcgcttaata accatgtcgt tattaatgca ccatgattcg tgacgttgtt
     2881 atagataaga atgacaatca atccgacgaa gataacgcta tcgatgcgac cacgccggag
     2941 caaaggaatt gccagcaggg tggggccgtt acggcggggc atgatgaact gatcgtagat
     3001 cgcgaaggcc aggagtgcgg cgatgaaaag aatcagtacc aggtccgtga ttgtcattaa
     3061 tcctccagat aaaaaaacgg ggccaaaagg ccccggtagt gtacaacagt cttacagtcc
     3121 cagcaggccg caagcgtaac cagcgatacc gatgacgaag aagccaacga tgatccacag
     3181 cgggttaact tttttgcgca gtagccacat acaagcaaag gtcagcagca gtggtaccag
     3241 gcctggcatt aactggtcca gaatagtctg gacagtagta acgtgttctt tgcccgtctg
     3301 gtcagtaatg cgagagacaa ccagcgggat gttgacatgt gtccacttgt taaccaatgc
     3361 ccccatgaca aacaggccga ggatagacgc cccttccgtc agtttttgca ggaagccacc
     3421 acccatatct ttaacgatat cgataccttt ggagtaacca tacgctacgc cgtagtaacg
     3481 ggttgccaga cgcaccaggt taaacaggat gaagaacagc agcggaccta acaggctgcc
     3541 gctcatcgcg ataccggcac ccagtgctgc aaataccgga cgtacggttc cccagaagat
     3601 cgggtcgcct acaccagcca gcggccccat caaaccgact ttgataccgt tgatagcacc
     3661 gtcgtcgatc tctgcgccat tagcacgctg ttcttccagc gccagggtta cgccgagaat
     3721 cggcgcagcc acgaacggct gggtgttaaa gaactccagg tgacggcgaa tagcttgttt
     3781 acgagcttcg ttgttctcag ggtagaggcg acgaattgcc ggtaccatag agaagcagaa
     3841 acccagtgcc tgcatacgtt cgaagttcca tgaaccctgg aagaggttag aacgcaggaa
     3901 gacgccacga atatcacttt gagtgagttt tttctcggtg gtagtttgag ttgtatcaac
     3961 catttcgctc acctgttagt ccagttcgtt atcgagatcg ttgttaccag cagcctgagc
     4021 aggcgcaccg gctacgcggt tgtatttcgg gctaagttgg atgtagagca ctgccataac
     4081 agtaccgatc acacccagag caaccaggtt aaagttggtg aatgctgcgg ttacgaagcc
     4141 gaggtagaag aacggcatca ggtagccagc acgcatcatg ttgataacca tcgcataacc
     4201 aaccaccacg atcatgccac cggcgatatt cagaccattg gtcaccactt ccggaatcgc
     4261 attcagcatg ttctgtactt cgctggtacc aacagacagc gcaacgatga cggccggaat
     4321 agccacacgc attgcttgca ggaacagaga agaaacgtgg atccaggaaa tcgctgtcag
     4381 gttgccgtta tcagcagcct tatccgcagc gtgctggaaa gcaacggtaa tagtacgaac
     4441 gatgatggtc agtacctggc ccgcagcggc cagagggatt gccagtgcga tacctgcacc
     4501 aatgctctga tgacctgcga taaccagaat ggtagaaatg atagaagcca gagcggcgtc
     4561 aggcgcaact gcagcaccga tgttcatcca gcccagcgcg atcatttcca gcgtaccacc
     4621 gataataata ccggttttca tatccccaag aacgataccc accagggtac acgcgattag
     4681 cggacggtga aactgaaatt catcgaggat tgatcccata cctgcgatac aggctacgat
     4741 aaataccagc acaatttgaa gagtggtaat ctccattgta cttctcctgt ttacgtaaga
     4801 cttaagtgtg aaaactgagt gataatcaac acaatacgtt acttatcgat tttgctgatc
     4861 agatccatca ttttcagttt cggatcggtg gaaaccttac ggacttccag ctcaataccg
     4921 cgcgcattca gtttcttgaa cgcctcgata tctttttcat caaccgaaac cgcgttattc
     4981 acctgggttt taccctgacg gaatgccata ccaccgacgt taacagaggt gattttcacg
     5041 ccgccttcaa cgagacgctc tacatctgtt gggttggtaa ataacagcat tacgcgttcg
     5101 ccagcatatt tcgggttgtt gtagacgcga atcattttgg caacatcaac tacgtgtgct
     5161 gttacgcccg gaggtgcaac ctgggtgagc agtgtcttac gaacggtatc cgcagccact
     5221 tcatcactaa caacaataat acgggagaca ttggtttctt tggtccagcg ggtggcgacc
     5281 tgaccgtgaa tcagacggtc gtcgatacgc gcaaggccaa taaccatgta gtcgtttggc
     5341 cccattggtt ttgccggagt tggagccgct tttggtgctg cggcagcggg tgctggcgcg
     5401 gctttttcaa ccggtttggc tttcagtgct ttcacgcctt cacggcctgt ttctactgcc
     5461 agcgcaacca gttcatcaaa gcttgggtca tcatcacgag ccattaacgt ttccacgagc
     5521 attggaatgt taacgcctgc aatgacttca taatgctctt tgtcgacgac aatgcggctg
     5581 gcagcattga acgggctgcc tccccatgta tcaacgagaa acagcacgcc tttagtggtg
     5641 tcgagttttg ccaactgagc gttgtacttt tcaatcagcg tttcggcatt ttcacctgga
     5701 acgaaatcga tccagccgac gttttcctgc tcgcctaaca gcatttctgc cgttttaagc
     5761 aactgctctg cagcccaacc atgtgtgcct ataacaatag caatggtcac ttgctacctc
     5821 ctttattatc gttaacacct caacgtgcca gatgtatttt tgaatcgtcg tccacaatcg
     5881 aatcgattca gataagggct acaaccaaaa acccctgcgt ttcgcgattt attttagata
     5941 tcgaaaaaat tattttatgt gatgaagatc cgtaatttaa ctttcgatta gcagaaattt
     6001 cgaaaggtaa aatatccttg tcacattcgt ttgcaaagga aggtaaatct ttgccaaatc
     6061 agaggcgtct ctgatatgtt taactcccgt ttaacaacca tggagtatag ggcagtagcc
     6121 cgcagtatgg atcgtcaccg acgtcatttc agcatcaggc cttttaacgc ctgcctttct
     6181 ggcactctat gccgcacctt tcgtttgcat tttgtcgtta cgcctgcatt atttctggcg
     6241 tcgaatagct attccttaag caggagcttg tcatggaatt cttaatggac ccctcaattt
     6301 gggcggggct actcacgctt gttgttctcg aaattgtgct gggtatcgat aacctggtct
     6361 tcatcgccat tcttgctgac aaactgccgc caaaacaacg cgataaagcg cgtttgctgg
     6421 ggttatcact ggcgctgatt atgcgtctgg ggctgctgtc gctgatttca tggatggtca
     6481 cgctgaccaa accgctattt accgtcatgg atttctcctt ctccggacgc gacctgatta
     6541 tgttgttcgg ggggatattc ttgctgttca aagcaacaac cgaactgcat gaacggctgg
     6601 aaaaccgcga tcatgattcc ggccacggta aaggctacgc cagtttctgg gtggtcgtca
     6661 cacagattgt catccttgac gccgtcttct cgttggatgc ggtaattact gcagtaggga
     6721 tggttaacca tctgccggtg atgatggcgg cggtagtgat tgcgatggcg gttatgttgc
     6781 tggcatccaa accgctgacg cgattcgtta accagcaccc cacggtggtg gtgctctgtc
     6841 tgagcttcct gttaatgatt ggtcttagtc tggtggcaga aggtttcggt ttccacattc
     6901 cgaaaggtta cctgtatgcc gcgattggct tctcgatcat catcgaagtg tttaaccaga
     6961 ttgcgcgtcg caactttatt cgccaccagt cgactttgcc gctgcgagcg cgtactgccg
     7021 atgccatcct gcgtttgatg ggcgggaaac gtcaggccaa tgttcagcac gatgccgata
     7081 acccgatgcc gatcccggaa ggtgcatttg ccgaagaaga acgttacatg attaacggcg
     7141 tactgacgct ggcgtcgcgt tctctgcgcg ggatcatgac gccgcgcggt gaaataagct
     7201 gggttgacgc taatctcggg gtcgatgaaa tccgcgagca actgctctct tcaccgcaca
     7261 gtctgttccc ggtatgtcgc ggtgaactgg atgaaatcat cggtattgta cgtgctaaag
     7321 aactgctggt ggcgctggaa gagggcgttg atgtggcggc gattgcttcg gcgtctccgg
     7381 cgattatcgt cccggaaacc ctcgatccga tcaacctgtt gggcgtgctg cgtcgtgctc
     7441 gcgggagctt tgttatcgtg accaacgagt ttggtgtggt acaaggtctg gtcacgccgc
     7501 tggatgtgct ggaagccatt gcgggtgaat tcccggacgc tgacgaaacg ccggaaatca
     7561 ttactgatgg tgacggctgg ctggtaaaag gcggtacaga tttgcatgcc ttgcagcagg
     7621 cgcttgatgt tgagcacctt gccgatgacg atgatatcgc gacggtcgcg ggcctcgtga
     7681 tctcggcaaa tggtcacatt ccccgtgtgg gcgatgtgat tgatgtaggg ccactgcata
     7741 tcaccatcat tgaagccaat gattatcgtg ttgatctggt tcgcattgtt aaagagcaac
     7801 cggcgcacga tgaagatg
//
LOCUS       DADMJB010000177         7817 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.180, whole genome shotgun sequence.
ACCESSION   DADMJB010000177 DADMJB010000000
VERSION     DADMJB010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7817)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7817)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7817
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.180"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(439..1173)
                     /locus_tag="JN078_003581"
                     /pseudo
     CDS             complement(439..1173)
                     /locus_tag="JN078_003581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000016737.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(1332..1691)
                     /locus_tag="JN078_003582"
     CDS             complement(1332..1691)
                     /locus_tag="JN078_003582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004983905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9042647.1"
                     /translation="MSRTTTVDGAPASDTDKQSISQPNQFIKRGTPQFMRVTLALFSA
                     GLATFALLYCVQPILPVLSQEFGLTPANSSISLSISTAMLAIGLLFTGPLSDAIGRKP
                     VMVTALLLASICTLFRQ"
     gene            1798..2691
                     /locus_tag="JN078_003583"
     CDS             1798..2691
                     /locus_tag="JN078_003583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY9042648.1"
                     /translation="MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQ
                     IGARLLARTNRSVLLTAAGKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFTSS
                     APFIRAVSDTLSLFRRDYPGVHLQTREMNTREQIAPLIEGTLDMGLLRNTALPETLEH
                     AVIVHEPLMAMIPHDHPLANNPNVTLAELAKEPFVFFDPHVGTGLYDDILGLMRRYHL
                     TPVITQEVGEAMTIIGLVSAGLGVSILPASFKRAQLNEMRWVPIAEEDAVSEMWLVWP
                     KHHEQSPASRNFRIHLLNALR"
     gene            2826..4046
                     /gene="mlc"
                     /locus_tag="JN078_003584"
                     /gene_synonym="dgsA"
     CDS             2826..4046
                     /gene="mlc"
                     /locus_tag="JN078_003584"
                     /gene_synonym="dgsA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor Mlc"
                     /protein_id="HAY9042649.1"
                     /translation="MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAP
                     ASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALR
                     DLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTE
                     NGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQV
                     VIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNLGCLETIASVDSILE
                     LAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFN
                     PQKILIGSPLSKAADILFPVISDSIRQQALPTYSQHISVESTQFSNQGTMAGAALVKD
                     AMYNGSLLIRLLHG"
     gene            4171..4866
                     /gene="bioD"
                     /locus_tag="JN078_003585"
     CDS             4171..4866
                     /gene="bioD"
                     /locus_tag="JN078_003585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310326.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HAY9042650.1"
                     /translation="MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGS
                     KETPEGLRNKDALVLQSVSTIELPYEAVNPIALSEEESSVAHSCPINYTLISNGLANL
                     TDKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIA
                     NDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIRLA
                     MLRSVLAVDRVTV"
     gene            complement(4819..6111)
                     /gene="clcB"
                     /locus_tag="JN078_003586"
     CDS             complement(4819..6111)
                     /gene="clcB"
                     /locus_tag="JN078_003586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001315626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="voltage-gated ClC-type chloride channel ClcB"
                     /protein_id="HAY9042651.1"
                     /translation="MHHLHIYPDLRTMFRRLLIATVVGILAAFAVAGFRHAMLLLEWL
                     FLNNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLMGWQKFTQQRPHAPTDYMEALQ
                     TDGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFTPRQEWKLWI
                     ACGAAAGMAAAYRAPLAGSLFIAEVLFGTMMLASLGPVIISAVVALLVSNLINHSDAL
                     LYNVQLSVTVQARDYALIISTGVLAGLCGPLLLTLMNACHRGFVSLKLAPPWQLALGG
                     LIVGLLSLFTPAVWGNGYSTVQSFLTAPPLLMIIAGIFLCKLCAVLASSGSGAPGGVF
                     TPTLFIGLAIGMLYGRSLGLWFPDGEEITLLLGLTEMATLLAATTHAPIMSTLMICEM
                     TGEYQLLPGLLIACVIASVISRTLHRDSIYRQHTAQHS"
     gene            complement(6270..6884)
                     /gene="dmsD"
                     /locus_tag="JN078_003587"
     CDS             complement(6270..6884)
                     /gene="dmsD"
                     /locus_tag="JN078_003587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707489.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tat proofreading chaperone DmsD"
                     /protein_id="HAY9042652.1"
                     /translation="MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWET
                     QWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDS
                     TLALRQWMREKGIQFEMKQYEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWST
                     RFLDVFIEKAEHPFYRALGELSRLTLAQWQSQLLIPVAVKPLFR"
     gene            complement(6927..7781)
                     /locus_tag="JN078_003588"
     CDS             complement(6927..7781)
                     /locus_tag="JN078_003588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit"
                     /protein_id="HAY9042653.1"
                     /translation="MGNGWHEWPLVIFTVLGQCVVGALIVSGIGWFAAKNDADRQRIV
                     RGMFFLWLLMGIGFIASVMHLGSPLRAFNSLNRIGASGLSNEIAAGSIFFAVGGLWWL
                     VAVIGKMPQALGKLWLLVSMALGVIFVWMMTCVYQIDTVPTWHNGYTTLAFFLTVLLS
                     GPILAAAILRAARVTFNTTPFAIISVLALIACAGVIVLQGLSLASIHSSVQQASALVP
                     DYASLQVWRVVLLCASLGCWLCPLIRRREPHVAGLILGLILILGGEMIGRVLFYGLHM
                     TVGMAIAG"
BASE COUNT         2094 a         1979 c         2013 g         1731 t
ORIGIN      
        1 taatactttt ttcattgtca taccctcaat ttgttttttc atttaacccc actgcggggc
       61 cgttgaaata actatatccc tgggaatggc agacttccgt gagtggttgg tttcagcgtg
      121 taacgatatg tacaaacgct gaataaatta cagcattgat aataacgtat tgtgacttaa
      181 gggaaattta gctaccaata atagtagtct tgatcgggtt aactatttta ctacttacaa
      241 agcggtagaa taactgcgca tcagtaataa atgacacaca gcaaaatgaa tccgtttatt
      301 tgggtactta taatcctgat gacgctagac gcactgcggg aattggctgg cgcttcgtct
      361 attttaggat ggctattaac gttggtttga gcaagcaata agtccggacg tgtagttacc
      421 gcagtccggg cttatttttc aggcgtgcag acgacgatgc aaacgcgtcc cgaccagcag
      481 agcaatgacc agcatcagag caataaatgc gccgacgccg ttccagccat agttatgcca
      541 gaaaacatca cccagcgtcc cggcaatact cgaccccaga tagtaactga acagatacag
      601 cgaggaggcc tggcctttag cgcgttttgc gcgggggccg atccagctgc tggcaactga
      661 gtgggctgcg aagaatcctg ctgagaagag taacattccg gcaaagatca gccacagcga
      721 gctgaataag gtcatcagta aaccaaacag cataaccccc gtcgaaaaca acatcaccgg
      781 accgcgcccg tagcgggtgg tcatggttcc ggctttgggt gagctccgtg taccggtcaa
      841 ataagccagc gataataagc caaccacggc ctgactgaca tgctaggggg aaagcatcaa
      901 ccgatagccg atgtaattaa acagcgtgac gaacgacccc atcagcaaaa agccttctgc
      961 gaacaataac ggtaatcccc ggtcacgcca gtgcagacga aagttgataa acaacgtctt
     1021 aggtcgcagc gaagtcgggc gaaaatggcg tgattccgga aggattttcc agaacatcaa
     1081 cgccgaggct agcgcgaaac aaccgattgc cgccagagca attcgccagt tgaaaaagtc
     1141 cgtgaagaca ccactaatta agcgtccgct catgccgcca attgagttgc cgctgatata
     1201 caaccccatc gaaaaggcca cgaaactggg gtggatttcc tcgctaagat aagtcatgcc
     1261 aacagctgcc acgccactta acgaaagccc aatcaaggcg cgcataatca aaatgccgtg
     1321 ccagctggtc atcattgtcg aaataacgta caaatggagg ccaacagtag cgccgtgacc
     1381 atcactggtt tgcgaccaat ggcatcggat agggggccag taaacagcaa accaatagcc
     1441 aacatcgccg tggaaatgga cagtgaaata ctactgttcg cgggggttaa gccaaactcc
     1501 tgcgaaagca ccggaaggat aggctgcaca caatagagga gtgcaaaggt tgccagtccg
     1561 gcagagaaca gcgccagggt gacgcgcata aattgcggcg taccgcgttt aataaattga
     1621 tttggctgag aaatgctttg cttgtcagtg tcgcttgccg gagcgccatc aacagttgta
     1681 gtacggctca cttgaaatcc ttgctaaata tgcctgtgga tcaggcttat acataggtta
     1741 ggaaaatcga attgttctgt ctaatatatt aataatctca aataagatgt tttaaatatg
     1801 aatattgaac ttcgtcatct gcgttacttt gttgctgttg cggaagagct gcatttcggg
     1861 cgcgccgctg cccgcctgaa tatttcgcaa ccaccgctaa gtcagcagat tcaggcactg
     1921 gagcaacaaa ttggtgcccg actgctggca cgaactaatc gcagtgtatt gctgacggca
     1981 gcaggaaaac agtttcttgc agatagtcgg caaatcctgt ctatggtaga tgacgctgcc
     2041 gctcgcgctg aaagactgca tcagggtgaa gcgggggagt tgcgcattgg ttttacttcg
     2101 tccgctcctt ttattcgggc ggtgtccgat acgttatcgc tgtttcgccg tgattatccc
     2161 ggtgtccatt tacaaacccg cgaaatgaac actcgtgagc aaatcgctcc gctcattgaa
     2221 ggaacgctgg atatgggatt gctgcgtaac acagcgttac cggagacgct tgaacacgca
     2281 gtcatcgtcc atgaaccgct tatggcgatg atcccgcacg atcatcccct ggcaaataac
     2341 ccgaatgtaa cgttggctga actggcgaaa gaacccttcg tcttttttga tccgcacgtc
     2401 gggacagggc tgtatgacga tattctcggg ctgatgcgac gttaccattt gacgcccgtc
     2461 atcactcagg aggtgggcga ggcaatgacc atcatcggtc tggtttccgc cggtctgggt
     2521 gtttcaattt tgcctgcttc atttaaacgt gctcagctca acgaaatgcg ctgggtgccg
     2581 attgctgaag aggatgcggt ttctgaaatg tggttggtct ggccgaaaca tcatgaacaa
     2641 agtccagctt cgcgtaactt tcgtattcat ctgctgaatg ctctcaggtg agggaaattt
     2701 cagcgaaaaa gcccgaaaaa tgtgctgtta atcacatgtc taagtaaaaa tttgacgaca
     2761 cgtattgaag tgcttcacca tagcctacag attatttcgg agcgcgaaaa tatagggagt
     2821 atgcggtggt tgctgaaaac cagcctgggc acattgatca aataaagcag accaacgcgg
     2881 gcgcggttta tcgcctgatt gatcagcttg gtccagtctc gcgtatcgat ctttcccgtc
     2941 tggcgcagct ggctcctgcc agtatcacta aaattgtccg tgagatgctc gaagcacact
     3001 tggtgcaaga gctggaaatc aaagaagcgg ggaaccgtgg ccgtccggcg gtgggactgg
     3061 tggttgaaac tgaagcctgg cactatcttt ctctgcgcat tagtcgcggt gagattttcc
     3121 ttgctctgcg cgatctgagc agcaaactgg tggtggaaga gtcgcaggaa ctggcgttaa
     3181 aagatgactt gccattgctg gatcgtatca tttcccatat cgatcagttt tttatccgcc
     3241 accagaaaaa acttgagcgt ctaacttcga ttgccataac cctgccggga attattgata
     3301 cggaaaatgg tattgtacat cgcatgccgt tctacgagga tgtaaaagag atgccgctcg
     3361 gcgaggcgct ggagcagcat accggcgtac cggtttatat tcagcatgat atcagcgcat
     3421 ggacgatggc agaggccttg tttggtgcct cacgcggggc gcgcgatgtg attcaggtgg
     3481 ttatcgatca caacgtgggg gcgggcgtca ttaccgatgg tcatctgcta cacgcaggca
     3541 gcagtagtct cgtggaaata ggccacacac aggtcgaccc atatggtaaa cgctgttatt
     3601 gcgggaacct cggctgcctc gaaaccatcg ccagtgtgga cagtattctt gagctggcac
     3661 agctgcgtct caatcaatcc atgagctcga tgttacatgg gcaaccgtta accgtggact
     3721 cattgtgtca ggcggcattg cgcggcgatc tactggcaaa agacatcatt accggggtgg
     3781 gcgcgcatgt cgggcgcatt cttgccatca tggtgaattt atttaaccca caaaaaatac
     3841 tgattggctc accgttaagt aaagcggcag atatcctctt ccctgtcatc tcggacagca
     3901 tacgtcagca ggcccttcct acgtatagtc agcacattag cgttgagagt actcagtttt
     3961 ctaaccaggg cacgatggca ggcgctgcgc tggtaaaaga cgcgatgtat aacggttctt
     4021 tgttgattcg tctgttgcat ggttaacatt ttttaactgt tctaccaaaa tttgcgctat
     4081 ctcaatttgg gccaggaaag cataacttag actttcaagg ttaattattt tcctagttta
     4141 tatttgtgaa gcataacggt ggagttagtg atgctgaagc gtttctttat taccggtaca
     4201 gacacttctg tagggaaaac ggtggtttcc cgcgcattgc tacaagcgtt agcctcccag
     4261 ggaaaaacag ttgcgggata taaacccgta gcgaagggga gcaaagagac acccgaaggg
     4321 ctgcgtaata aagatgccct ggtgttgcag agtgtttcaa ccatcgaact gccttatgaa
     4381 gcagttaatc ctatcgcgtt aagcgaagaa gaaagtagcg tggcgcacag ttgcccaatc
     4441 aattacaccc tcatttcaaa cggcctggca aacctgaccg ataaagtcga tcatgtcgtg
     4501 gtagaaggga ctggcggctg gcgcagtctg atgaatgatt tgcgtccact ctctgaatgg
     4561 gtggtgcagg aacagttgcc ggtgttgatg gttgtcggta ttcaggaagg ttgcattaac
     4621 catgcactgc taacagctca ggcgattgcc aacgacgggc tgccgctcat tggctgggtg
     4681 gctaaccgaa tcaacccagg actggcgcat tatgcggaaa tcattgatgt gctgggtaaa
     4741 aaacttccgg caccgctcat tggtgaactg ccttatctgc cgcgcgccga acagcgagaa
     4801 ctggggcaat acatccgctt agctatgctg cgcagtgtgc tggcggtaga tagagtcacg
     4861 gtgtaacgtc cgcgaaatta ccgacgcaat gacgcaggca atcaataaac cggggagtag
     4921 ctgatactcc ccggtcattt cacatatcat caacgtcgac ataatcggcg cgtgcgtggt
     4981 tgccgccaac agtgtcgcca tctcggtcaa tccgagtaaa agcgtaattt cttcgccatc
     5041 agggaaccat aatcccaggc tacgaccata caacatgcca atggcaagac cgataaatag
     5101 cgtcggtgta aagacaccac cgggtgcgcc ggaaccgcta ctcgccagca cggcacacag
     5161 tttacaaagg aagatcccgg caatgatcat taacagtggt ggggcggtta aaaaggattg
     5221 tacggtgcta tagccgttgc cccacactgc aggtgtgaac agggaaagca gacccacgat
     5281 caacccgcct agtgccagtt gccagggcgg cgcaagtttg agactcacaa atccacgatg
     5341 acaggcgttc attaacgtta acaacagtgg tccgcacaga cctgccagca cacctgtact
     5401 gataatcagc gcatagtcac gagcctgaac cgtcactgag agttgtacgt tgtagagtaa
     5461 cgcgtcgcta tgattaatca gattgctaac cagcaatgcc acgacggcgg aaataatcac
     5521 cgggccgaga gaggccaaca tcatagtgcc aaacagcact tcggctataa ataaactgcc
     5581 agcaagcggg gcacgatagg ccgcagccat tcccgccgcg gcgccacagg cgatccataa
     5641 tttccactcc tggcgtggcg taaaacgttg ggcaaaacag gaggcggcaa gggcagctaa
     5701 aagaatcatc gcaccttcgc gaccaattgc actgccgctg gttactacca gcagcgaggc
     5761 aagcgattta accaggcttg ctgcgtaatc gaactgtcca tcggtttgca acgcttccat
     5821 gtaatcggtc ggcgcatgag ggcgttgttg ggtaaatttc tgccagccca tcagcaacaa
     5881 acccgccgcc agtccgccga gcgccggagt tagcaaccgt cgccaggggg aaaggtttgt
     5941 cgctgcattg accagactgc cggagtcatt attgaggaac aaccactcca gtagcagcat
     6001 cgcatgacga aacccggcaa cggcaaaggc cgcgagaata ccgacgactg ttgcgataag
     6061 cagacggcgg aacatagtgc gcagatccgg atagatgtgt agatgatgca tgagcagaaa
     6121 tgggcaatga aacacgggcg actattttgc ggcaaaagag gccagccgca aaagcagtgc
     6181 gtgctttaag agataaaaaa acgtgacact gtaacctatt attgccggat tgcgcgtaat
     6241 cgtcaccatc cggcaatatt acggtgatcc tatcgaaaca gcggtttaac cgcgacagga
     6301 attaacagtt gtgattgcca ttgcgccagc gttaagcgag acagttcacc cagtgcacgg
     6361 tagaaagggt gttctgcttt ttcgataaaa acatcaagaa aacgtgttga ccacggaaaa
     6421 aggtgccatg ccagcaattc ttcgcattct gtctggcgac cattctccgc caaccacgca
     6481 gccatcaaca gcagtgaacc aaaatgatct tccggttcgt attgcttcat ttcaaactga
     6541 atgcctttct cgcgcatcca ctgacgaagt gccaatgttg aatcgccaaa cagcacagat
     6601 tcgcgatcca gccagaccga cccccacggc ggagacggca gtgcccacgg gccgacaaac
     6661 aaacgctgcc aggcctgggc gtgagtctct tcacactgtg tctgaaaagc cgtcaccagc
     6721 ggcgctaatg acgcttctgg tagaggccac tgagtttccc agccgtcact ggtgagtacc
     6781 gcaaccagag gtgcggcttc cgcactctct ggagcgtaat aaaacagcgc gcccaacacg
     6841 cgcgccgcga cagaaaaatt atcttgctgt gaaaaatggg tcattcctaa cattctgaaa
     6901 tgtgcgggtt gccccgcacc aatttgttaa cctgcaatag ccattcctac tgtcatgtgc
     6961 aggccataaa agagcacacg cccgatcatc tcaccgccaa gtatgaggat tagccccaga
     7021 ataagtccgg caacgtgagg ttcacggcga cgaatgagcg ggcaaagcca gcatccaaga
     7081 cttgcgcata acaataccac acgccagacc tgtaaggagg cgtaatctgg taccagtgcg
     7141 ctggcttgtt gcacggatga gtgaatagac gccagagaca aaccttgcag cacaatcacc
     7201 ccggcacaag cgatcagcgc cagaacgcta atgatggcaa atggtgtggt attaaatgta
     7261 acgcgagctg cccgcagaat tgcggcagca agtattggac cgctcaacaa taccgtcagg
     7321 aagaaagcca gcgtagtgta accgttatgc caggttggca cggtgtcgat ttgatacacg
     7381 caggtcatca tccagacgaa aatgacgccg agcgccatgc tgacaagtaa ccagagtttc
     7441 cccaacgctt gcggcatttt accgatgacc gccaccagcc accatagtcc accaacggca
     7501 aaaaatatgg aaccggcagc aatctcgtta ctcagaccag aagctccgat tcgattcagc
     7561 gagttaaacg ctcgcagtgg cgatcccagg tgcatgacag aggcaataaa cccgatgccc
     7621 atcaacagcc agaggaaaaa catgccacgg acaatacgct gacggtctgc gtcatttttg
     7681 gcggcgaacc agccaattcc gctaacaatc agcgcgccta ctacgcattg acccaatacg
     7741 gtaaagataa ccagtggcca ttcatgccat ccatttccca ttttacactt cctccggatt
     7801 agccagataa ccagtgg
//
LOCUS       DADMJB010000178         7660 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.181, whole genome shotgun sequence.
ACCESSION   DADMJB010000178 DADMJB010000000
VERSION     DADMJB010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7660
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.181"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            380..988
                     /locus_tag="JN078_003589"
     CDS             380..988
                     /locus_tag="JN078_003589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HAY9042654.1"
                     /translation="MKLVGSYTSPFVRKLSILLLEKGITFEFINELPYNADNGVAQFN
                     PLGKVPVLVTEEGECWFDSPIIAEYIELMNVAPAMLPRDPLESLRVRKIEALADGIMD
                     AGLVSVREQARPAAQQSEDELLRQREKINRSLDVLEGYLVDGTLKTDTVNLATIAIAC
                     AVGYLNFRRVAPGWCVDRPHLVKLVENLFSRESFARTEPPKA"
     gene            1086..2477
                     /gene="selA"
                     /locus_tag="JN078_003590"
     CDS             1086..2477
                     /gene="selA"
                     /locus_tag="JN078_003590"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HAY9042655.1"
                     /translation="MTTETRSLYSQLPAIDRLLHDSSFLSLRDTYGHTRVVELLRQML
                     DEAREVIRDSQTLPAWCENWAQEVDARLTKEAQSALRPVLNLTGTVLHTNLGRALQAE
                     AAVEAVAQAMRSPVTLEYDLDDAGRGHRDRALAQLLCRITGAEDACIVNNNAAAVLLM
                     LAATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHANDYRQAVNEN
                     TALLMKVHTSNYSIQGFTKAIDEAELVALGKELDVPVVTDLGSGSLVDLSQYGLPKEP
                     MPQELIAAGVSLVSFSGDKLLGGPQAGIIVGKKEMIARLQSHPLKRALRADKMTLAAL
                     EATLRLYLHPEALSEKLPTLRLLTRSAEVIQIQAQRLQAPLAAHYGAEFAVQVMPCLS
                     QIGSGSLPVDRLPSAALTFTPHDGRGSHLESLAARWRELPVPVIGRIYDGRLWLDLRC
                     LEDEQRFLEMLLK"
     gene            2474..4318
                     /gene="selB"
                     /locus_tag="JN078_003591"
     CDS             2474..4318
                     /gene="selB"
                     /locus_tag="JN078_003591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HAY9042656.1"
                     /translation="MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAY
                     WPQPDGRVPSFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLT
                     GNPMLTVALTKADRVDEARVDEVERQVKEVLREYGFAEAKLFITAATEGRGIDALREH
                     LLQLPGREHASQHSFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDSLWLTGVNKPMRV
                     RALHAQNQPTETAHAGQRIALNIAGDAEKEQINRGDWLLADAPPEPFTRVIVELQTHT
                     PLTQWQPLHIHHAASHVTGRVSLLEDNLAELVFDTPLWLADNDRLVLRDISARNTLAG
                     ARVVMLNPPRRGKRKPEYLQWLASLARAQNDSEALAVHLQRGAVNLPDFAWARQLNGE
                     GMRELLQQPGYIQAGYSLLNAPVAARWQRKILDTLATYHEQHRDEPGPGRERLRRMAL
                     PMEDEALVLLLIEKMRESGDILSHHGWLHLPDHKAGFSEEQQAIWQKAEPLFSDEPWW
                     VRDLAKETGTDEQAMRLTLSQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGS
                     TCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGNDHLLRDALLFPEK"
     gene            4508..5659
                     /gene="yiaY"
                     /locus_tag="JN078_003592"
     CDS             4508..5659
                     /gene="yiaY"
                     /locus_tag="JN078_003592"
                     /EC_number="1.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine dehydrogenase"
                     /protein_id="HAY9042657.1"
                     /translation="MASSTFFIPSVNVIGADSLTDAMNMMADYGFTRTLIVTDSMLTK
                     LGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHD
                     CAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCIITDEARHIK
                     MAIVDKHVTPLLSVNDSSLMIGMPKSLTAATGMDALTHAIEAYVSIAATPITDACALK
                     AVTMIAENLPLAVEDGSNAKAREAMAYAQFLAGMAFNNASLGYVHAMAYQLGGFYNLP
                     HGVCNAVLLPHVQVFNSKVAAARLRDCAAAMGVNVTGKNDAEGAEACINAIRELAKKV
                     DIPAGLRDLNVKEEDFAVLATNSLKDACGFTNPIQATHEEIVAIYRAAM"
     gene            5824..7362
                     /locus_tag="JN078_003593"
     CDS             5824..7362
                     /locus_tag="JN078_003593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001551836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HAY9042658.1"
                     /translation="MTNNPPSAQIKPGEYGFPLKLKARYDNFIGGEWVAPADGEYYQN
                     LTPVTGQLLCEVASSGKRDIDLALDAAHKVKDKWAHTSVQDRAAILFKIADRMEQNLE
                     LLATAETWDNGKPIRETSAADVPLAIDHFRYFASCIRAQEGGISEVDSETVAYHFHEP
                     LGVVGQIIPWNFPLLMASWKMAPALAAGNCVVLKLARLTPLSVLLLMEIVGDLLPPGV
                     VNVVNGAGGEIGEYLATSKRIAKVAFTGSTEVGQQIMQYATQNIIPVTLELGGKSPNI
                     FFADVMDEEDAFFDKALEGFALFAFNQGEVCTCPSRALVQESIYERFMERAIRRVESI
                     RSGNPLDSVTQMGAQVSHGQLETILNYIDIGKKEGADVLTGGRRKLLEGELKDGYYLE
                     PTILFGQNNMRVFQEEIFGPVLAVTTFKTMEEALELANDTQYGLGAGVWSRNGNLAYK
                     MGRGIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRETHKMMLEHYQQTKCLLVSYSDKP
                     LGLF"
BASE COUNT         1812 a         1918 c         2137 g         1793 t
ORIGIN      
        1 ggattgaccg gatggccgga cgtcactccg ccggggcaca ccgaacaggc cacgccggtg
       61 ggggtaccaa tgcgcacccc ggctgaaccc tgaacaatgc taccgccata ctgcgtcatg
      121 tcgccctgac gcgctgccgg ttttccgctc atttctcatc cttgttttat cgggttattt
      181 gtctgctgac aggcaaaacc ctacagattt ataagaaagc ctgaagtgag atatccatca
      241 gagtgaaata attaggaaaa tatttatatc accatgataa atatgtgatt tatttggaag
      301 taacaaacca tcaacatttt ctgccctttt tcccatcacc aggccatact gatatttttc
      361 ctcgcacaaa ggactcggca tgaaactcgt cggtagctac accagcccgt ttgtacgcaa
      421 actttctatt ctgttgttag aaaagggcat aactttcgaa tttattaatg aactgcccta
      481 taacgcggac aacggcgtgg cgcaatttaa cccgttagga aaagtgccgg tgctggtgac
      541 cgaagagggc gaatgctggt ttgattcgcc gatcatcgct gaatatattg agttaatgaa
      601 tgtcgctccg gcgatgttgc cgcgcgatcc gctggagtcg ttgcgggtgc gcaaaattga
      661 ggcgctggcg gatggcatta tggatgccgg gctggtatcg gtgcgtgaac aggcgcgtcc
      721 ggcggcgcag cagtctgaag atgaattgtt acgccagcgg gagaaaatca accgcagtct
      781 ggatgtgctg gaaggatatc tggtcgatgg cacactcaaa accgatacgg tcaatctggc
      841 gactatcgcc attgcctgtg ctgtcggata tctcaatttc cgccgcgttg cgccaggttg
      901 gtgtgtcgac cgcccacact tagtcaaact ggtcgaaaac ctgtttagcc gcgaaagttt
      961 tgctcgcacc gaaccgccaa aggcttgatg cgcgatatgt cctcctgacc catctcacgt
     1021 tacaatccgt ggttatgtta aacgcccttc tccatgtgag agggccttga ttagccaggt
     1081 ttcctatgac aaccgaaacg cgttccctct atagtcaact tccggctatt gatcgcttat
     1141 tgcacgatag ctccttcctt tctttgcgtg atacttatgg tcacacccgc gtggtggaat
     1201 tgttgcgtca gatgctcgac gaagcgcgag aagtgattcg tgacagccag acgcttcctg
     1261 cgtggtgtga aaactgggcg caagaagtcg atgcccggtt gacgaaagag gcgcagagcg
     1321 cgctgcgtcc ggtgctcaac ctgacgggaa ccgtgctgca taccaacctt ggacgagctt
     1381 tacaggcgga agccgcggtg gaagccgttg cgcaggctat gcgttcgcca gtgaccctcg
     1441 agtacgatct ggacgacgct ggacgcggac atcgcgatcg ggcgctggcg caactgctgt
     1501 gccgtattac gggggcggaa gatgcctgta tcgtcaataa caatgcggcg gcggtgttat
     1561 tgatgttggc ggccactgcc agcgggaaag aggtggtagt atctcgcggc gaattggtgg
     1621 agattggcgg cgcgtttcgt attcccgatg ttatgcgtca ggcaggctgc accctacacg
     1681 aagtagggac caccaaccgc acgcacgcga atgattatcg tcaggcggtg aatgaaaata
     1741 ccgcactgtt gatgaaagta cataccagta actacagcat tcaggggttc accaaagcga
     1801 tagatgaagc ggaactggtg gcgctcggca aagagctgga tgttcccgta gtgactgatt
     1861 taggcagtgg ctcgctggtc gatcttagcc agtacggttt gccgaaagag ccaatgccgc
     1921 aggagttgat tgcggcgggc gtcagtctgg tgagcttctc cggcgacaag ttgttaggcg
     1981 ggccgcaggc agggattatc gttggtaaaa aagagatgat cgcccgcctg caaagccacc
     2041 cgctgaagcg tgcattacgc gcggataaaa tgaccctcgc ggcgctggaa gccacgttgc
     2101 gtctttattt acaccctgaa gctctgagtg aaaaattacc gaccctgcgc ctgcttaccc
     2161 gcagcgcaga ggtcattcaa atccaggcac aacgtttaca ggctcccctt gccgcacatt
     2221 acggcgcgga gtttgcggta caggttatgc catgtctttc gcagattggc agtggttcgc
     2281 tgccggttga tcgcctgccg agcgcggcat taacgtttac accccatgat ggacgcggta
     2341 gccaccttga gtcattagcc gcccgctggc gtgaattgcc agtgccggtg attggtcgta
     2401 tttatgacgg acgattgtgg ctggatttac gctgccttga agatgagcaa cggtttttgg
     2461 agatgttgtt gaaatgatta ttgcgactgc cggacacgtt gaccacggca aaacaacctt
     2521 attgcaggcg attactggcg taaatgctga ccgtctgccg gaagaaaaaa agcgcggcat
     2581 gaccatcgat ctcggctatg cctactggcc gcagccggat ggtcgcgtgc ctagttttat
     2641 cgacgtaccc ggtcatgaaa agtttctttc caacatgctg gcgggcgttg gtggtatcga
     2701 tcacgcgctg ttggtggtgg cgtgcgatga cggcgtgatg gcgcagaccc gtgagcatct
     2761 ggcgattttg cagctgaccg gtaacccgat gctgacagtg gcgctgacca aggccgatcg
     2821 cgtggacgaa gcgcgtgttg atgaggttga acgccaggta aaggaggtgc tgcgggaata
     2881 cggttttgct gaggcaaaac tgtttatcac cgcagcaacc gaaggtcggg gaattgatgc
     2941 cctgcgcgag catctgcttc agttaccagg acgtgaacac gccagccaac atagtttccg
     3001 cctcgcgatc gaccgcgcat ttaccgtaaa aggtgccggg ctggtcgtca ccggtacggc
     3061 gttaagcggg gaagtgaagg taggcgattc actctggctg actggtgtaa ataaaccgat
     3121 gcgtgtacgt gcgctgcatg cacaaaacca gccaacagaa accgcccatg ccgggcagcg
     3181 tatcgcgctt aacatcgcgg gtgatgcgga aaaagagcag attaaccgtg gcgactggct
     3241 gcttgccgat gcgccgccag agccgttcac acgggtgatt gtcgagcttc aaacccatac
     3301 accgctgacc cagtggcagc cgctgcatat tcaccacgcc gccagccacg tcacgggacg
     3361 cgtttcactg ctggaagata accttgctga actggtcttc gacaccccgt tatggctggc
     3421 agataacgac cgcctggtat tgcgcgatat ctctgcccgc aacacgctgg ccggagcgcg
     3481 cgtcgtgatg cttaacccgc cgcgtcgcgg taaacgtaaa ccagagtatc tgcaatggct
     3541 ggcttccctc gccagggcac agaatgatag cgaagcgtta gccgttcacc tgcaacgcgg
     3601 cgcggttaat cttcctgatt tcgcctgggc gcgccagctc aacggcgaag ggatgcgcga
     3661 actgctgcaa cagcctggct atattcaggc tggttatagc ttgttgaatg cgccggttgc
     3721 cgctcgctgg caacggaaaa ttctcgacac attagcgact tatcatgagc aacatcgcga
     3781 tgaacctggg cctgggcgcg aacgtctgcg acgtatggcg ttgccaatgg aagatgaagc
     3841 gctagtactg ttgctgattg aaaagatgcg cgaaagcggc gacatcctca gtcatcacgg
     3901 ttggctgcat ctgccggatc acaaagcggg cttcagcgaa gagcagcagg ccatctggca
     3961 aaaagcagag ccgctgttta gtgacgagcc gtggtgggtg cgtgatctgg caaaagagac
     4021 gggtaccgac gagcaggcaa tgcgcttgac gctaagccag gcggcgcagc aaggaataat
     4081 taccgcgatc gtcaaagatc gttattaccg taacgatcgg attgtcgaat ttgccaatat
     4141 gatccgcgat ctcgatcagg agtgtggttc aacctgcgcg gcggatttcc gcgatcgctt
     4201 aggcgtaggc cgaaagctgg caattcagat tctggaatat tttgaccgca ttggctttac
     4261 gcgtcgtcgt ggaaatgatc atttattgcg cgacgcatta ttatttccgg aaaaataagg
     4321 aaatgattaa ttaattttta aaataaatta atacaaattt cttatgattt taaaaaaagc
     4381 acattgttta atgaatacaa tgtgcttttt attagattaa ttttgataat taataataat
     4441 gatcatgttt tcgaatgaaa atcctcagta agcttcccac ccttttttac actttcagga
     4501 gtgtgttatg gcatcttcaa ctttctttat tccttctgtg aatgtcatcg gcgctgattc
     4561 attgactgat gcaatgaata tgatggcaga ttatggattt acccgtacct taattgtcac
     4621 tgacagtatg ttaacgaaat taggtatggc gggcgatgtg caaaaagcac tggaagaacg
     4681 caatattttt agcgttattt atgatggcac ccaacctaac cccaccacgg aaaacgtcgc
     4741 cgcaggtttg aaattactta aagagaataa ttgcgatagc gtgatctcct taggcggtgg
     4801 ttctccacac gactgcgcaa aaggtattgc gctggtggca gccaatggcg gcgatattcg
     4861 cgattacgaa ggcgttgacc gctctgcaaa accgcagctg ccgatgatcg ccatcaacac
     4921 cactgcgggt acggcctctg aaatgacccg tttctgcatc atcactgacg aagcgcgtca
     4981 tatcaaaatg gcgattgttg ataaacatgt cactccgctg ctttctgtca atgactcctc
     5041 tctgatgatt ggtatgccga agtcactgac cgccgcaacg ggtatggatg ccttaacgca
     5101 cgctatcgaa gcatatgttt ctattgccgc cacgccgatc actgacgctt gtgcactgaa
     5161 agccgtgacc atgattgccg aaaacctgcc gttagccgtt gaagatggca gtaatgcgaa
     5221 agcgcgtgaa gcaatggctt atgcccagtt ccttgccggt atggcgttca ataatgcttc
     5281 tctgggttat gttcatgcga tggcgtacca gctgggcggt ttctacaacc tgccacacgg
     5341 tgtatgtaac gccgttctgc tgccccatgt tcaggtattc aacagcaaag tcgccgctgc
     5401 acgtctgcgt gactgtgccg ctgcaatggg cgtgaacgtg acaggtaaaa acgacgcgga
     5461 aggtgctgaa gcctgcatta acgccatccg tgaactggcg aagaaagtgg atatcccggc
     5521 aggcctacgc gacctgaacg tgaaagaaga agatttcgcg gttctggcga ctaattccct
     5581 gaaagatgcc tgtggtttta ctaacccgat ccaggcaact cacgaagaaa ttgtggcgat
     5641 ttatcgcgca gcgatgtaat catcatttcc acaacggctg gcaaattgtc agccgctttt
     5701 tcaactatct ctgtaaccct tgcccgtaaa ttcgtgatag ccgtcgtaaa gctgttaccg
     5761 actggcgaag atttcgccag tcacgtctac ccttgttata cctcacaccg caaggagacg
     5821 atcatgacca ataatccccc ttcagcacag attaagcccg gcgagtatgg tttccccctc
     5881 aagttaaaag cccgctatga caactttatt ggcggcgaat gggtagcccc tgccgatggt
     5941 gagtattacc agaacctgac gccggtgact gggcagctgc tgtgcgaagt ggcgtcttcg
     6001 ggcaaacgag acatcgatct ggcgctagat gctgcgcaca aagtgaaaga taaatgggcg
     6061 cacacctcgg tgcaggatcg cgcggcgatt ctgtttaaga ttgccgatcg aatggaacaa
     6121 aacctcgagc tgttagcgac agctgaaacc tgggataacg gcaaacccat tcgcgaaacc
     6181 agtgctgccg acgtgccgct ggcgattgat cattttcgct atttcgcctc gtgtattcgg
     6241 gcgcaggaag gtgggatcag tgaagttgat agcgaaaccg tggcctatca tttccatgaa
     6301 ccgttaggcg tggtggggca gattatcccg tggaacttcc cgctgctgat ggcgagctgg
     6361 aaaatggctc ccgcgctggc ggcgggcaac tgtgtggtgc tgaaactcgc acgtcttacc
     6421 ccgctttctg tactgctgct aatggaaatt gtcggtgatt tactgccgcc gggcgtggtg
     6481 aacgtggtca atggcgcagg tggggaaatt ggcgaatatc tggcgacctc gaaacgcatc
     6541 gccaaagtgg cgtttaccgg ctcaacggaa gtgggccaac aaattatgca atacgcaacg
     6601 caaaacatta ttccggtgac gctggagttg ggcggtaagt cgccaaatat cttctttgct
     6661 gatgtgatgg atgaagaaga tgcctttttc gataaagcgc tggaaggctt tgcactgttt
     6721 gcctttaacc agggcgaagt ttgcacctgt ccgagtcgtg ctttagtgca ggaatctatc
     6781 tacgaacgct ttatggaacg cgccatccgc cgtgtcgaaa gcattcgtag cggtaacccg
     6841 ctcgacagcg tgacgcaaat gggcgcgcag gtttctcacg ggcaactgga aaccatcctc
     6901 aactacattg atatcggtaa aaaagagggc gctgacgtgc tcacaggcgg gcggcgcaag
     6961 ctgctggaag gtgaactgaa agacggctac tacctcgaac cgacgattct gtttggtcag
     7021 aacaatatgc gggtgttcca ggaggagatt tttggcccgg tgctggcggt gaccaccttc
     7081 aaaacgatgg aagaagcgct ggagctggcg aacgatacgc aatatggcct gggcgcgggc
     7141 gtctggagcc gcaacggtaa tctggcctat aagatggggc gcggcataca ggctgggcgc
     7201 gtgtggacca actgttatca cgcttacccg gcacatgcgg cgtttggtgg ctacaaacaa
     7261 tcaggtatcg gtcgcgaaac ccacaagatg atgctggagc attaccagca aaccaagtgc
     7321 ctgctggtga gctactcgga taaaccgttg gggctgttct gatataagaa gctggtcgca
     7381 ttgggtattc attgcctgat gtgacgctta cgcgtcttat catgcctacg ggaacctgac
     7441 cgtaggccgg ataaggcgta cacgccgcat ccggcataaa caaagcgcac gttgttacaa
     7501 tttacgtttt aaacctacgt gcgcaataat ccagactacg ccaacagaag tgcgtttctg
     7561 gggcgtgttt tgtcaggagt ttaatctcgc gtttcgatgg tgagcgggcg aactaggccg
     7621 taaatcacca ttggtgatcc gaggccaatc agcaataaac
//
LOCUS       DADMJB010000179         7640 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.182, whole genome shotgun sequence.
ACCESSION   DADMJB010000179 DADMJB010000000
VERSION     DADMJB010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7640)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7640)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7640
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.182"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            565..3978
                     /locus_tag="JN078_003594"
     CDS             565..3978
                     /locus_tag="JN078_003594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000438152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HAY9042659.1"
                     /translation="MEQSLNFEMLRSQWPELAELACMAERYVHSDPESCLVKLRNYTE
                     LMVRWLYRQERLPEGIKANLYDLMNADVFTSMMPEAIIMKMDALRIHGNRAAHGGRIK
                     AKDTYWLLKEAYLLGIWLYVRYAHGNVDDCPKFTLPPLTQSSGRADEKRLEDAIKAQD
                     ESRERELALQRALQQEQEKAEHLTQRLNEARARNQHVADILSIDEAETRRRLIDSRLL
                     AADWNVGEELKNTDQVTQEHPVKEQPTTSGDGYADYVLWDEAHKPLAVVEAKKTSVNA
                     EQGRIQARLYADWLEKEYGQRPVIFYTNGYDIWLWDDHKTHGYPPRRVFGFYSKESLQ
                     YLIQQRETRLPLNRVPHVKDNEGKAVAGRLYQLETIARVSERFTNKYRQSLIVQATGT
                     GKTRVAIALSKLMIDARWVKRVLFLCDRKELRKQAANAFNQFTNEPLYVVGKSKKADR
                     QNARIYIATYPGMMKIMDHFDVGYFDLIIADESHRSIYNVYGDLFKYFDALQIGLTAT
                     PIDMVSKTTFGLFGCEGRIPTANYSLEDAIADNNLVPYEVVTHTTEFLREGIKREKLS
                     DAQIRELEEQGIDPNTLEFDGKALDEAIYNKDTNRYILRNLMENGLKDRDGQLPGKTI
                     IFARNHKHALLLNELFDDMYPQFAGRFCQVIDNYDPRAEQLIDDFKGLDESTNKELTI
                     AISVDMLDTGIDVPEIVNLVFAKPVKSKVKFWQMIGRGTRLCPGLYGYDDNGKPLDKQ
                     KFRIFDHWGNFEYHELHTEEAEVTATKSLAQKRFEAWVMLGAAAQRKFDKQAVDLVAH
                     QLREQINALDEKSIAVQEKWQQKAQYSDEKVLRQLSPKTQQDLLSVLAPLMQWLDVRG
                     QSDAIRFDMDILAAQTARYTNPEELDVLWPIIVEKVERLPPHLAQVQQQGQRINQLRN
                     LSWWKQASLEELEDIRIHLRGIMHLMEKDATPKFGSIQVDITEDANLIQTETRKTNIR
                     SIDFKLYRQQVQGALEPLFQQNPVLKKIRNGEPVTQNELDELAKLVLIQNPNVDIRAL
                     KEFYPQATASLDKLLRTIIGMDSDAVEVRFAQFAADNSLTSQQLRFLSLLKNHIRDYG
                     TIEMRQLFEQPFTHIHNEGVTGVFPDIAQIARLQKIVEELGVVTDAATV"
     gene            4042..5676
                     /locus_tag="JN078_003595"
     CDS             4042..5676
                     /locus_tag="JN078_003595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HAY9042660.1"
                     /translation="MITGDLKSKIDGLWEDFWVGGITNPLTVIEQITYLMYSRMLDTQ
                     EQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQAD
                     ASKVTLLGNFMKDARLEIVKPSLLTKAVEVIKNLPLDRGDTKGDLYEYLLSKLTTAGI
                     NGQFRTPRHIIRTMVEMMEPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHT
                     EIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVDAP
                     DIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSLDEEDIDSTLSAMVKTKKTELL
                     FLARILQMLKVGGRSATIVPQGVLFGSSKAHQSLRKTLVEDNQLETVINLPSGVFKPY
                     AGVATAILIFTKGGQTDEVWFYDLQNDGYSLDDKRNPIKDNDLPHLLASWKHYRTLRG
                     LPVDNFMGKKLASLLKQQYPEGINAGVDFKDRTQAAFVVPKADIAAQKYDLSINRYKE
                     VVYQAEEYEDPKVILKRLKDLEKEILADLDELEGML"
     gene            5685..6755
                     /locus_tag="JN078_003596"
     CDS             5685..6755
                     /locus_tag="JN078_003596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001438891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HAY9042661.1"
                     /translation="MVKLGDVINVHYGKALKADQRVSNGSVHVFGSSGIVGNHDKTLC
                     SYPTIIIGRKGSVGAITWAPSGGWIIDTAYYVEIKDNNKLDLRYLFYILSGIDLTKKT
                     ITTSIPGLNRDDLYDTFIKLPPFEEQKRIVDLLDKAEGIRQKREQSIKLADDFLRATF
                     ATMYGNPITNPKKWPVHLMGEIIEFKGGNQPPKSDFIFEPKQGYIRLVQIRDFKSDKY
                     ATYIPQEKAKRIFEVDDVMIARYGPPVFQILRGLSGSYNVALMKASPKENIRKGFIFY
                     LLQLPEYHDVVVKNSERTAGQTGVNLELLNKFNVPLPPIYYQDEILDRLARIEKFKEK
                     IEISLNHLEIQFLSLQKRLIGF"
     gene            complement(6880..7596)
                     /locus_tag="JN078_003597"
     CDS             complement(6880..7596)
                     /locus_tag="JN078_003597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000947861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042662.1"
                     /translation="MLSETKKRIPAHLFRMIKDELYELVLTDDPKGKLYVRDSEKIEE
                     GVSTTEFVVGYGAISMVKKSESMATKGLVGLERVDLIREVVFENGYYDWGCVVNDVLP
                     NICKGNARIPIFHFLNHAKLINPDGSIINETELSGGVLSRLNITPISFQSQGWDKRRS
                     ETVPEVKVGVNELYLAYDFSFFLRMMPYMEPGLIKRDMGELLKILKKHIDEAMNTQVL
                     SSNFCKLVCIYDYIKNSHRY"
BASE COUNT         2222 a         1740 c         1791 g         1887 t
ORIGIN      
        1 tcctgttctc ccaaatatca tggtattgat acgggagatt atgccgtaca ggtacgacac
       61 gttatgtcgt gccaaagggg agtggataga aaaaatggcg aagatgcgaa aagttgatta
      121 atgcattgaa aaaaaatgaa ttaataatga acttgggtaa aagcgccatc aaaatacgac
      181 acgacctgtc gtattttgtg ttagccggga aaagatatct gctacttact aaaatgattt
      241 agtgctgaaa atatttataa gccaataaat agacaggtat tacggagtaa cgcccaggct
      301 attttaacga gcctgctgtt ttattggctc aaaaaacata tcccatagat gatcagccat
      361 acccgcgtta gtgagcaagg tatcccttga gtagccaggg ctgaagacgc ccattgatgg
      421 gcgaaaacca aggttctggc cgttaaagcg gctatgtcgt taaacacatc accaccatat
      481 gccatccggc tcacttcgtc ggccaaatta gtgtgatatt ctttccagaa tttctgttgt
      541 atccacaaca taaggcgatg attgatggag cagtctctca attttgaaat gttgcgcagc
      601 cagtggccgg aactggcaga actcgcatgt atggcagagc gctatgttca ctccgatccg
      661 gaaagctgcc tggttaagct gcgcaactac accgaattga tggtgcgctg gttgtatcgt
      721 caggagcggt tgccggaagg tattaaggct aatctttacg atttaatgaa cgctgatgtc
      781 tttaccagca tgatgccgga agccatcatc atgaaaatgg atgcgctgcg tatccatggc
      841 aaccgtgccg cgcacggcgg acgtatcaaa gctaaagata cttactggct gctcaaagaa
      901 gcgtatttgt tgggaatttg gctgtatgtt cgctacgccc acggtaatgt tgatgactgc
      961 cccaaattta cactccctcc attaacacaa tcttcaggtc gtgcagatga aaaacgtctg
     1021 gaagatgcaa tcaaggctca ggatgaaagc cgtgagcgcg aactggcgct acaacgcgca
     1081 ctacagcaag aacaggaaaa ggccgaacac ctcactcaac gcctgaatga agccagagcg
     1141 cgtaaccagc atgttgccga tattctctct attgatgaag cggaaacccg ccgtcgcctg
     1201 attgactctc gcttacttgc agccgactgg aatgtagggg aagaacttaa aaacacggat
     1261 caagtcacac aagaacatcc agtcaaagag caacccacca cctctggtga cggttatgca
     1321 gactatgtct tgtgggatga ggcacacaaa ccgttggcgg tggtggaagc aaaaaaaacc
     1381 agcgtcaatg ccgagcaagg acgaattcag gcccggctgt atgcagactg gctggaaaaa
     1441 gaatacggtc agcgtccggt catcttctac accaacggct atgatatctg gctgtgggat
     1501 gaccataaaa ctcatggtta tcccccgcgt cgggtgtttg gcttctacag caaggaaagc
     1561 ctgcaatatc ttattcagca gcgtgaaacc cgtctgccgc tgaacagagt gccacacgta
     1621 aaagataacg aaggtaaggc cgttgccgga cgtttgtacc agctcgaaac cattgcccgc
     1681 gtcagtgaac ggtttaccaa caagtaccga caatcgttaa ttgttcaggc tacgggtaca
     1741 ggcaaaaccc gcgtggcaat tgcactaagc aaactgatga ttgatgcccg ctgggtaaaa
     1801 cgcgtcctgt ttctttgcga ccgtaaagaa ctgcgtaaac aggcggcaaa tgcctttaat
     1861 caattcacca atgagccgct gtatgtggtc gggaaatcga aaaaagcaga caggcagaat
     1921 gccagaatct acatcgctac ctatcccggt atgatgaaaa tcatggacca tttcgatgtc
     1981 ggttatttcg atttgatcat cgccgatgaa tcccaccgct ctatctacaa cgtctacggc
     2041 gatctgttta agtattttga tgccctccag attggcctga cggccacgcc aattgacatg
     2101 gtgagtaaaa ccactttcgg cctgtttggt tgtgaaggac gtattcctac cgccaactac
     2161 agcctggaag atgccatcgc cgataacaat ctggttccct atgaggttgt cacacacaca
     2221 acagaattcc tgcgcgaagg tatcaaacgg gagaaattaa gcgacgcaca aatccgcgag
     2281 ctggaagaac aaggcataga tcccaatacg ctggagtttg atggcaaggc gctggatgag
     2341 gcgatctaca acaaagacac caaccgctat atcctgcgta acctgatgga aaatggcctg
     2401 aaagatcggg acggccagtt gcctggtaaa accatcattt tcgcccgtaa ccacaaacac
     2461 gcgctgctgt tgaatgaatt gttcgacgat atgtacccac agtttgccgg gcgcttctgc
     2521 caggtcatcg acaactacga tccccgcgcc gagcaactga ttgatgattt taaagggctg
     2581 gatgaaagca ccaacaaaga gctgaccatc gctatctccg ttgacatgct cgataccggt
     2641 attgatgtcc cggaaattgt gaatctggtc tttgccaaac cggtcaaatc aaaagtgaag
     2701 ttctggcaga tgattggccg tggtacgcgc ctctgtccgg ggttgtacgg ttacgacgat
     2761 aacggcaaac cgctggataa acagaaattc cgcattttcg atcactgggg caattttgag
     2821 tatcacgagc tgcataccga agaggcggaa gtcacagcga caaaatcgct tgcgcaaaaa
     2881 cgcttcgaag cgtgggttat gctgggggcc gctgcgcagc gtaaattcga caaacaggcg
     2941 gtggatttag ttgctcacca gcttcgcgag caaatcaacg cactggatga aaagtcgatt
     3001 gccgtacagg aaaaatggca gcagaaagcg cagtacagtg atgaaaaggt gctgcgccag
     3061 ctttctccga aaacacagca ggatctgcta tctgttctgg ccccgttgat gcagtggctg
     3121 gacgtgcgcg ggcaaagcga tgccatacgc tttgatatgg atattctggc ggcgcaaact
     3181 gcccgttata ccaacccgga agagctggat gttctctggc cgatcatcgt cgaaaaagtg
     3241 gagcgcctgc cgccgcattt ggcgcaggtg cagcaacagg gacaacgaat caatcagctt
     3301 cgtaatttaa gctggtggaa gcaggccagc ctggaagagc tggaggatat tcgcattcat
     3361 ttgcgcggta tcatgcacct gatggaaaaa gacgcgacgc ctaaatttgg ttcgatacag
     3421 gtggatatta ccgaagatgc gaacctgatc cagacggaga cccgcaaaac taatatccgc
     3481 tcgattgatt tcaaactcta tcgccagcag gttcaggggg cgctggagcc gctgttccag
     3541 caaaacccgg ttctgaagaa aatccgcaac ggcgagccag tcacgcaaaa cgagctggat
     3601 gagctggcga agctggtgct gatccagaac cccaacgttg atattcgtgc gttgaaagag
     3661 ttttatccgc aggcaaccgc cagcctggat aaacttttgc gtaccatcat cgggatggac
     3721 agcgacgcgg tggaagtgcg ttttgcccag ttcgccgctg ataacagcct gaccagccaa
     3781 caactgcgct tcctgtcatt gctgaaaaac cacattcgcg attacggcac cattgaaatg
     3841 cggcagctct ttgaacagcc ttttacgcat atccacaacg aaggcgttac cggtgtgttc
     3901 cctgatatag cgcaaatcgc ccgcctgcaa aagatagtcg aagagctggg tgttgtgacc
     3961 gacgcagcga cggtataata cacgcatgac aagccccggc agcggggctt ttgtatttaa
     4021 aacaggatat aaacgctaac aatgattact ggcgacttaa aaagtaaaat cgacggacta
     4081 tgggaagatt tctgggtggg tggtatcacc aacccgctga ccgtaatcga acagatcacc
     4141 tatctgatgt attcccggat gctggatacc caggaacaac gcgacgaaaa gcgtaaacaa
     4201 atcgcgggta ttgattttaa accgcgtttt gcgccagaac agcaggagtt ccgtttcagt
     4261 cactatagca accttggctc ggatgagatg atggaagtgg tgcgcgatgg cgtattccag
     4321 catttccgtc agctcggcca ggccgatgct tcgaaggtga cgctgctggg caactttatg
     4381 aaagatgctc gtctggagat tgttaagccg tcattgctga ccaaagcggt tgaggtaatc
     4441 aaaaacctgc cattggatcg cggcgacacc aaaggcgacc tttacgaata cctgttaagc
     4501 aagctgacaa ctgccggaat caacggacag ttccgcacac cgcgccacat tatccgcacg
     4561 atggttgaaa tgatggagcc gaacccggcc cgcggcgaga cgatttgcga tcccgcctgt
     4621 ggcaccggtg gttttctggc aaccagctat gaatatctgc tggagaagta cagctcgctg
     4681 gaatccattc atactgagat tggcaccaac gaacgtggcg agctggaaga gcaaaaaatc
     4741 tttaccggcg atctgctgac accgtggcgt aaccatgtgg ataacaacat gttccacggt
     4801 tacgactttg acaccacaat gctacgtatc gccgccatga acctgattat gcacggcgtg
     4861 gatgcgcctg atatccacta tcaggacaca atgagccaga gtttcagcac aaacttcccg
     4921 caggccagta aaaacgcctt caacctgatt ctggcgaacc cgccgtttac cggttcactg
     4981 gacgaggaag atatcgactc cacgctgtcg gcaatggtga aaaccaaaaa aaccgaacta
     5041 ctgttcctgg cgcgtattct gcaaatgctg aaagtgggcg ggcgcagtgc cactatcgtg
     5101 ccgcagggcg tgctgtttgg ctctagcaag gcgcaccagt cacttcgcaa aacgctggtg
     5161 gaagataacc aactggaaac ggtgatcaat ctgccttctg gtgtatttaa accttacgct
     5221 ggcgtggcga cggcgatcct gatctttacc aaaggcggtc aaacggatga ggtctggttc
     5281 tacgatctac aaaatgacgg ctacagcctg gatgataagc gcaacccgat aaaagacaac
     5341 gatctgccgc atctgctggc aagctggaag cattaccgta ctttacgcgg gctaccggtt
     5401 gataacttta tgggtaagaa gttagcctcg ttgcttaaac agcagtaccc ggaagggatt
     5461 aatgctggcg ttgattttaa agatcgcacg caggcggcgt ttgttgtacc gaaagcggat
     5521 attgctgcgc agaaatacga tctatccatc aaccgttata aagaagtcgt gtatcaggcg
     5581 gaggaatatg aagatccgaa ggtgatattg aagcggttaa aggatctgga aaaagagatt
     5641 ctggcggatt tggatgagct ggaggggatg ctgtgagttc ggcgatggtg aagttagggg
     5701 atgttattaa tgttcactac ggaaaagcat taaaagctga tcagcgtgta tcgaatggaa
     5761 gtgtccatgt gtttggtagt tcaggaattg tcggcaacca cgataaaacg ctttgcagct
     5821 atcccacgat aattattggc cgcaaaggca gcgttggtgc tattacctgg gctccaagcg
     5881 gaggctggat cattgatact gcttattacg ttgagatcaa agataataat aagttagatc
     5941 tccgatactt gttttatatt ctgagcggaa ttgatctcac taagaaaacg attaccacaa
     6001 gtattcctgg attaaataga gacgatctct atgatacatt tattaaatta ccaccttttg
     6061 aagagcagaa acgaattgtg gatcttctcg ataaagctga gggtatacgc caaaaacgtg
     6121 agcaatccat caaactggct gatgattttt tgcgtgctac gtttgctaca atgtatggga
     6181 atcctattac aaaccccaaa aaatggcctg tccatcttat gggagaaatt attgaattta
     6241 aaggtggaaa tcaaccacct aaaagtgatt ttatttttga acctaaacag ggttatatta
     6301 gattagtaca aattagagat tttaaatccg ataaatatgc gacgtacatt ccgcaagaaa
     6361 aagcaaaacg tattttcgaa gttgatgatg ttatgattgc tcgttatggg ccacctgtgt
     6421 ttcaaatact tagaggttta tccggcagct acaatgtagc tttaatgaaa gcttcaccca
     6481 aagaaaatat taggaagggg tttatattct atcttctaca acttccggaa tatcatgatg
     6541 ttgttgtaaa aaactctgaa agaacagcag gacaaaccgg tgtaaatctt gaactattaa
     6601 acaaattcaa tgttcccctc ccacctatat actatcaaga tgagatatta gatagattag
     6661 ctagaattga aaaatttaaa gaaaaaatag aaatatcatt aaatcattta gaaatacaat
     6721 ttttatcact acagaagaga ttaataggtt tttaaatcct tagtatcgaa ataaacatta
     6781 atttattata ttaaattaag atattttagg aaattaaggc gtcactctta ggtaacgcct
     6841 ttttttacta tctcgccccc taagaaggtt atatcttact taatacctgt gactattttt
     6901 gatataatca taaatacaca ctaatttgca aaaattactt gacaacacct gagtattcat
     6961 agcttcatct atatgttttt tcaatatttt gagaagctct cccatatcgc gcttgattaa
     7021 tccaggctcc atataaggca tcattcttaa aaagaaactg aaatcataag caagatataa
     7081 ctcattgacc cccaccttga cctcaggaac ggtttcagag cgtcgtttat cccatccttg
     7141 agactgaaaa ctaataggag tgatatttaa tcgtgataaa acgccacctg agagttctgt
     7201 ttcattaatt atactcccat caggattaat taatttagcg tgatttaaga agtgaaaaat
     7261 aggaatgcgc gcattgcctt tgcatatatt tggcaaaaca tcattaacaa cacatcccca
     7321 atcataatat ccattttcaa atacaacctc tcggatgaga tctacacgct ccagtccaac
     7381 caatccttta gttgccatcg attccgattt ttttaccatc gaaatagcac catatcccac
     7441 aacaaactca gttgtactga ccccttcttc aattttctct gaatccctca catataattt
     7501 tcctttcgga tcatcagtta agaccaactc ataaagttca tcttttatca ttcggaataa
     7561 atgtgctgga atcctttttt tagtttcact cagcacctca aatatttctt tataggatgg
     7621 tgcctgaaca tattttaccg
//
LOCUS       DADMJB010000180         7630 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.183, whole genome shotgun sequence.
ACCESSION   DADMJB010000180 DADMJB010000000
VERSION     DADMJB010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7630)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7630)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7630
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.183"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..1471
                     /locus_tag="JN078_003598"
     CDS             <1..1471
                     /locus_tag="JN078_003598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042663.1"
                     /translation="VLAVQAFVQAKAQQAELTHLIWQMRSEHVTSSDDPFASEEGKTC
                     RQYVQQLSQALWLSGISQPLIHYEAAFSRAQQAAERCSWRWVSESLRQLRASVDAFHA
                     RASHYHAGECLRQLAALNSRLNCAQEMARRDSVGEVPPVPWRTVVGSGIAGEAKLDHL
                     RLVSLGMRCWQDIEHYGLRIWFTDPDTGSILHLSRSWPRSEQENSPAATRRLFSFQAG
                     ALAGGQIVSQAAKRSADGELLLATRNRLSSVVPLSPDAWQMLSAPLRQPGIVALREYL
                     RQRPPACIRPLNQVDNLFILPVAECISLGWDSGRQTLDAQVISGEGEDNLLTLSLPAS
                     ACSPFAVERMAALLQQTDDPVSLVSGFVSFVEGQLTLEPRVMMTKTRAWALDAETAPV
                     APLPSASVLPVPSTAHQLLMRCQALLIQLLHNGWRYQEQSAISQAELLANDLTAVGFY
                     RLAHVLVQFRNTESEARVEAMNNGVLLCEQLFPMLQQQG"
     gene            1596..2057
                     /locus_tag="JN078_003599"
     CDS             1596..2057
                     /locus_tag="JN078_003599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416627.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YehR family lipoprotein"
                     /protein_id="HAY9042664.1"
                     /translation="MKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLNGTEIAIT
                     YVYKGDKVLKQSSETKIQFASISATTKEDAAKTLEPLSAKYKNIAGVEEKLTYTDTYA
                     QENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVK"
     gene            complement(2098..2568)
                     /locus_tag="JN078_003600"
     CDS             complement(2098..2568)
                     /locus_tag="JN078_003600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1456 family protein"
                     /protein_id="HAY9042665.1"
                     /translation="MLSNDILRSVRYILKANNNDLVRILALGNVEATAEQIAVWLRKE
                     DEEGFQRCPDIVLSSFLNGLIYEKRGKDESAPALEPERRINNNIVLKKLRIAFSLKTD
                     DILAILTEQQFRVSMPEITAMMRAPDHKNFRECGDQFLRYFLRGLAARQHVKKS"
     gene            complement(2615..3334)
                     /gene="yehT"
                     /locus_tag="JN078_003601"
     CDS             complement(2615..3334)
                     /gene="yehT"
                     /locus_tag="JN078_003601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310963.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator BtsR"
                     /protein_id="HAY9042666.1"
                     /translation="MIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVH
                     KLRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKP
                     IDEARLEKTLARLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRM
                     SGVYVTSHEGKEGFTELTLRTLESRTPLLRCHRQYLVNLAHLQEIRLEDNGQAELILR
                     NGLTVPVSRRYLKSLKEAIGL"
     gene            complement(3331..5016)
                     /gene="btsS"
                     /locus_tag="JN078_003602"
     CDS             complement(3331..5016)
                     /gene="btsS"
                     /locus_tag="JN078_003602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulatory system sensor histidine
                     kinase BtsS"
                     /protein_id="HAY9042667.1"
                     /translation="MYDFNLVLLLLQQMCVFLVIAWLMSKTPLFIPLMQVTVRLPHKF
                     LCYIVFSIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSM
                     GGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVAEMVQMLIILA
                     IARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAAS
                     TEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPISST
                     YTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNR
                     LFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIK
                     AVIRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQV
                     NIAIPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNA
                     GLYQPVTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRITLQLPWRDEA"
     gene            5238..5303
                     /locus_tag="JN078_003603"
                     /pseudo
     CDS             5238..5303
                     /locus_tag="JN078_003603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416631.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family DNA-binding transcriptional
                     regulator"
     gene            5531..5779
                     /locus_tag="JN078_003604"
     CDS             5531..5779
                     /locus_tag="JN078_003604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinI family protein"
                     /protein_id="HAY9042668.1"
                     /translation="MRVEICIAKEKITKMPNGAVDALKEELTRRISKRYDDVEVIVKA
                     TSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH"
     gene            complement(5895..6164)
                     /locus_tag="JN078_003605"
     CDS             complement(5895..6164)
                     /locus_tag="JN078_003605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HAY9042669.1"
                     /translation="MLLQHSDIEIAWYASIQQEPNGWKTVTTQFYIQEFSEHIAPLQD
                     AVDLEIATEEENSLLEAWKKYRVLLNCVDTSTAPDIEWPEEPDTM"
     gene            6221..6889
                     /locus_tag="JN078_003606"
     CDS             6221..6889
                     /locus_tag="JN078_003606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAY9042670.1"
                     /translation="MVKLMKKNTDDGAKIYTPITLKLYDWWVLGVSNRLAWGCPTKEH
                     LLPHFLEHLGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASTRAGESKIKHK
                     ISHDVFETYPAALHGQFDSISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATI
                     LGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSA
                     SGKK"
     gene            7205..>7630
                     /locus_tag="JN078_003607"
     CDS             7205..>7630
                     /locus_tag="JN078_003607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005105549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HAY9042671.1"
                     /translation="MLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGE
                     NRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALK
                     ELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLE"
BASE COUNT         2051 a         1880 c         1738 g         1961 t
ORIGIN      
        1 cgtactggca gtacaggcct ttgtccaggc aaaagcgcag caagcggaat tgactcattt
       61 aatctggcag atgcgcagcg aacacgtcac atcatctgac gatccgtttg ccagcgaaga
      121 aggcaaaacg tgtcgtcaat atgttcaaca actaagccag gcattatggc tgagcggcat
      181 cagccagccg cttattcact acgaggccgc tttcagccgc gcgcagcaag cagcggaacg
      241 ctgcagctgg cgatgggtga gtgaatcgct acggcaactg cgcgccagcg ttgatgcctt
      301 ccacgcccgc gccagccact atcatgccgg agaatgctta cgtcagcttg cggcattaaa
      361 cagtcgatta aactgcgcac aagagatggc ccggcgcgac agtgttggtg aagttcctcc
      421 tgtgccgtgg cgcacggtcg ttggctctgg cattgccgga gaagcaaagc ttgatcatct
      481 gcggctggtg tctttaggta tgcgttgctg gcaggatatt gagcattatg gtttacgcat
      541 ctggtttacc gatcccgaca ccggcagtat tttgcatctt tcgcgtagtt ggccgcgaag
      601 tgaacaggaa aactcaccgg cagctacgcg tcggctgttt agttttcagg ctggcgcact
      661 ggcgggtggg caaattgttt cacaagcagc aaaacgcagt gccgatggcg agctgctgtt
      721 agctacccgc aaccgcttaa gcagcgttgt gccgctgtcg ccagacgcct ggcaaatgtt
      781 gagcgcgccg ttacgccagc cgggcattgt ggctttgcgg gaatatttac gccagcgtcc
      841 ccccgcctgc atacggcctc ttaatcaggt ggataactta tttattctgc cggtcgctga
      901 gtgtatttca ctcggttggg acagcggccg ccagacgctg gatgcgcagg taatcagcgg
      961 cgaaggtgaa gataatctgc tgacgttatc ccttccggca tctgcctgtt ctccttttgc
     1021 cgttgaacgc atggcggcgc ttttgcaaca aacagacgac cccgtgagtc tggtttctgg
     1081 ctttgtcagc tttgtagagg ggcaattgac actggaacca cgggtgatga tgacaaaaac
     1141 ccgtgcctgg gcgctggacg cggaaactgc gcctgtggca ccgctacctt ctgccagcgt
     1201 tttgcctgtg ccgtctaccg ctcatcagtt gctgatgcgc tgccaggcgt tacttattca
     1261 actgctccat aacggctggc gctatcagga acagagcgct attagtcagg cagagttgct
     1321 ggcgaatgac ctcaccgcgg tgggttttta tcggctggca catgtgttgg tacaatttcg
     1381 taatacagaa agcgaggcac gggtagaagc aatgaataac ggtgttttgc tttgcgaaca
     1441 attattcccc atgcttcagc aacaaggatg aaatagtgct ttttactaag agttctactc
     1501 cagttccgga ctgctcacgc cacggtatta ggcatatcct atatagcccc tggtgagagt
     1561 caccagtttc ttgattaaat aaaatggagt tttacatgaa ggctttcaat aagctgtttt
     1621 ccctcgttgt tgcatctgtt ctggttttct ctcttgctgg ctgcggtgac aaagaagaat
     1681 cgaagaaatt cagcgccaat ctgaacggca ctgaaattgc cattacctat gtctacaaag
     1741 gtgacaaggt gcttaagcaa tcttctgaaa ccaaaattca atttgcctcc attagtgcaa
     1801 ccaccaaaga agatgctgcc aagacacttg agccgttaag cgccaaatac aaaaacatcg
     1861 cgggtgttga agaaaaatta acctataccg atacctacgc gcaggaaaac gtgactatcg
     1921 atatggaaaa agtggatttt aaagccctgc agggtatttc aggaatcaac gtttctgctg
     1981 aagatgccaa aaaaggtatc actatggcgc aaatggaact ggtgatgaaa gccgctggtt
     2041 ttaaagaagt gaaataatct gtcggcggcc atgtttcgta tggccgccat acccgtctta
     2101 gcttttcttc acatgctggc gcgctgccag tccacgcaga aaataacgta aaaattgatc
     2161 gccgcattcg cggaagtttt tatgatccgg tgcgcgcatc atcgctgtaa tttccggcat
     2221 cgaaacgcgg aactgctgtt cggtgaggat agccagaatg tcatcggttt tcagcgaaaa
     2281 cgcgatgcgt aattttttca gcacgatgtt gttattaatg cgacgttccg gctccagtgc
     2341 cggagcagac tcatccttgc cgcgtttttc ataaatcagg ccattgagga atgacgacaa
     2401 aacaatgtcc ggacaacgct gaaaaccctc ttcgtcttct ttacgtagcc agacggcgat
     2461 ctgttccgcg gtggcttcga cattacccag cgccagaata cgcaccaggt cattattatt
     2521 ggctttcaaa atgtagcgca cgctgcgcag aatatcgtta cttagcatga ggccttcagg
     2581 tgttgatgag gcaaaaagcc attttagcag tcttttacag gccaatcgcc tcttttaagc
     2641 ttttcagata acggcggctg accggcacgg ttaagccatt acgcaaaatc aactcggcct
     2701 ggccgttatc ttccagacga atctcctgta aatgcgcgag gttaaccaga tactgacgat
     2761 ggcagcgcag tagtggtgta cgactttcca gggtacgtaa tgtcaattcg gtaaagccct
     2821 ctttcccttc gtggctggta acgtagacac cgctcatccg actgctgaca aatgccacat
     2881 ctttcatttg cagcaaataa atccgactat gccccgtaca agggataaat ttcagcgcct
     2941 gttgattttc cggtaacagc gaaacatcct gcttgctgcg ctcctgacgc aatcgcgcca
     3001 gcgttttctc cagtcgcgct tcatcaattg gcttcagcag ataatcaaag gcatgttctt
     3061 caaaggcttt aatagcgtat tcgtcaaacg cagtgagaaa aacaatatac gggcgatgtt
     3121 ccgggtcaag catccccacc atttccagac cactgatgcg cggcatctgg atatcgagaa
     3181 acagcacatc cgggcgcagt ttatgcaccg cgccgatccc ttccacggcg tttgaacact
     3241 ctccaacgat ttcaatatcg ctctgctcct gcaaaaatac acgcaggttc tcccgtgcta
     3301 acggttcatc atcgacaatt aagactttaa tcatgcctcg tccctccatg gtagttgtaa
     3361 cgttattcgg gtgtaactat caggctcaca ggcgacgctt attccatagt catcgccaaa
     3421 ccgttcacgt aaacgcttat ccaccagatt catccccagc ccactggcat tggttaccgg
     3481 ttgatacaaa ccggcattgt cttcgatctc cagcatcaaa tgttgcccct cacgtcgggc
     3541 gctgattgcc actcgccctg tatccagcag ttgtgatgtc ccatgtttaa tggcgttttc
     3601 cactatcggt tgcagggtaa acgcgggcaa ttgctgctgg gataattctt gcggaatagc
     3661 aatgttgacc tgcaaccgcg actggaagcg cgccttttca atttgcagat aagcgttcac
     3721 atgttcaatt tcgtcggcga gagtaacaaa ctccgaaggc cgctttaagt ttttgcggaa
     3781 aaaagtggaa agatactgca ccagctggct ggcctgttcg ctgtcgcggc ggatcaccgc
     3841 tttaatggtg ttaagcgcat taaacaaaaa atgaggattc acctgggcgt gaagcagttt
     3901 gatttctgac tgggtgagca tcgctttttg ccgctcatat tgcccggcaa gaatctgcgc
     3961 cgaaagcagt tgcgcaatcc cctcgcccag cgtgcggttt attgaactga ataaacggtt
     4021 tttggcttca tacaatttga tggtgcccat cacccgctga ttttcaccac gcaacggaat
     4081 taccagcgtc gaccccagtt tgcattgcgg atgcaaagag caacgataag gtacttcgtt
     4141 gccatcagcg tagaccactt caccggtttc aatcgctttt aaggtgtaag tcgaagaaat
     4201 cggtttgccg ggtaaatggt ggtcgtcacc aattccagta aaggccagca atttctctcg
     4261 atcggtaatc gcgactgcac caatatccag ctcctgatac agcacctgtg ccactttcat
     4321 gctgttcact tcgttaaacc cctggcgcaa aatgccttcc gtcgaggcag ccactttcag
     4381 cgcagtggca gaaaaagccg aagtgtattt ttcaaacatc gcgcgtttat cgagcaatat
     4441 acgcataaac agcgccgcgc cgacggtatt ggtgaccatc attggtgcag caatattact
     4501 caccagacgc accgcatctt cataaggtcg ggcgatcgcc aggatgatca acatttgcac
     4561 catttcagcg acgaacgtga cggcaccggc ggtaatgggg ttaaagactt tatcagtacg
     4621 cccgcgacga atcaggatgc tgtgtaccag gccgccgagc aatccttcaa cgatggtcga
     4681 gatcatgcaa cttagcgcgg tcatgccccc catcgaatat cgatgtaacc cgccggtcag
     4741 gccaaccagc ccaccgacga ccggaccgcc gagtaagccg cccattaccg cgcctatcgc
     4801 acgggtattg gcaatagaat cgtcaatgtg caacccaaac caggtgccca tgatgcagaa
     4861 gatggaaaag acgatgtagc agagaaattt atgcggcaga cgaaccgtga cctgcattaa
     4921 cggtatgaat aatggcgttt tactcattaa ccacgcaatg actaaaaaaa cgcacatctg
     4981 ctgaagcagc agcaacacca gattaaaatc gtacataccc gcaaaccaca cttcccttta
     5041 aaacgcgtaa catacattgc ctgcgtttaa ctttctttga actcttgcag aaaaatgaga
     5101 attcgtgagt acgatcactc aaaatcgcct ggcaaaaata aaatcaccct atagatgcac
     5161 aaaaaacggg caaaactacc tggttcgcaa aactgcgtct aaagttaaac cgggacctcg
     5221 cgagcaaggg tgagacgatg gcgctttaca caattggtga agtggcgttg ctttgtgata
     5281 ttaaccctgt cacgttacgc gcgtgacgca acattttaaa aaatcgacga agatcgtcca
     5341 ggagcgccgt ttttcaaggg ttggatagat gattcgttta ccatgtcgac gaacttcgac
     5401 gaatttcgcc gataaaaagt gtcccataca tgccccattg atgccccata aacaatatca
     5461 gaaattgata ctggttatcc atacagataa aaataacacc tgtacataac tacagttaca
     5521 ggagggtgtt atgcgtgttg agatctgtat cgctaaagaa aaaatcacta aaatgccaaa
     5581 cggtgctgtg gatgcgttaa aggaagaatt aacccgacgc atcagtaaac gttatgacga
     5641 tgtagaggtg atcgtaaaag ccaccagcaa cgatggcctt tctgttacac gcaccgcaga
     5701 taaggattct gcaaaaacat ttgttcagga gactctgaaa gatacctggg agtctgctga
     5761 cgagtggttt gttcactaat aaacacgtaa aatcggtaac ggctggaaat cattcaatac
     5821 tcgcactatc gaaagtttac cagccaaccg cagcacgtcc tgcatacgtc gtgtctgcgg
     5881 tttttctttt tcgcttacat tgtgtctggt tcttccggcc actcaatatc aggtgcagtt
     5941 gatgtatcaa cacagttcag caacacccga tacttcttcc aggcttccag caacgagttt
     6001 tcttcctccg ttgcgatctc cagatctaca gcatcctgaa gtggcgcaat atgctcactg
     6061 aattcctgga tgtagaactg tgtggtgacg gtcttccagc cattcggctc ctgctgtatc
     6121 gaagcatacc aggctatttc aatatcgcta tgctgcagca gcatttaacc ccttgtaatt
     6181 catcgccata attgatttaa ttcacaaata aaactataat atggtgaaat taatgaaaaa
     6241 aaacacagat gatggggcta aaatttacac accaattacc ctaaagcttt atgactggtg
     6301 ggttttggga gtatcaaatc ggcttgcatg gggatgtcct acaaaggaac accttcttcc
     6361 acactttctg gaacatttag gtaacaacca tctggatatt ggtgttggaa ctgggtttta
     6421 ccttactcac gtacctgaga gtagtctgat atctttaatg gatttgaacg aagctagcct
     6481 gaacgcggca tctacaaggg ctggggaatc aaaaattaaa cataaaatta gccatgatgt
     6541 ttttgaaact tatcccgcgg cgttacatgg tcaatttgat tccatttcca tgttttacct
     6601 tcttcactgc ctgcctggaa atatatctac aaaaagctgt gtaatacgca atgcggcgca
     6661 ggccttaact gatgatggaa ctctatacgg agccacaatt cttggcgatg gagttgtgca
     6721 caatagcttc ggtcaaaaac tgatgcgcat ttacaatcag aaaggcatct tttcaaacac
     6781 aaaagattcc gaagaaggct taacacatat actctcagag catttcgaga atgttaaaac
     6841 caaggttcaa ggtactgtag taatgttttc tgcttcaggg aaaaaatagc atccaaccgc
     6901 agcacgttct tgcttaagac gtgctacggt ttcctttacg atttggggtt gcgactttac
     6961 ctctattgat aatgcattcc ggcagaacat tcaaatatga atgtacgata tttaactaac
     7021 cgaaaaacaa aatatagcac aggcgagaca tttaccatct aagaaaatag tatcgttttt
     7081 ttacagttaa atcaacatca cttccttaaa atgaaaacaa taaatttcaa tcctgaaaca
     7141 ttttatttta gcttattatt tcccagcatc acattttatc aggatatcct tctgcgaggt
     7201 tattatgctt cctgtaaata atccccccct atccactgga aacgtctctt tttacagaac
     7261 tacatcaatc gacaatgttc acaataatta tctctccgaa tgggttgaat ggactaaaaa
     7321 cagcatttcc ggagaaaaca gggaaactgc ttttacccgg ctccaattat gtctggaaaa
     7381 cagtgaaaca tcgttggact tatcttgttt aggtctcaga tctctaccac gattgcctga
     7441 caatcttgat gaaattaatg taagcaataa ccaactatca atgctccccg agctaccaag
     7501 ggcattgaaa gaactgaatg caagcagtaa tcaattatct gcacttcctg aattaccagt
     7561 gtcgctggaa tatataaatg tgagtgataa ccatttgttc gcacttcctg aattacctgc
     7621 gtcactagaa
//
LOCUS       DADMJB010000181         7534 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.184, whole genome shotgun sequence.
ACCESSION   DADMJB010000181 DADMJB010000000
VERSION     DADMJB010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7534)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7534)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7534
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.184"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(1..243)
                     /locus_tag="JN078_003608"
                     /pseudo
     CDS             complement(1..243)
                     /locus_tag="JN078_003608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000080172.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            195..1232
                     /locus_tag="JN078_003609"
     CDS             195..1232
                     /locus_tag="JN078_003609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001363149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HAY9042672.1"
                     /translation="MHRGFCVAHEPSILLPSVGAQLSNPDNITDNADRISDEWKAFDR
                     AIESNHGVPEAAARLKEHLRDFRNTHAAAQLGVSAVAALPGDRLSAALMVKSHGTVSV
                     DGKVSDADLTYLEEVANSTGQEVDKSRLTSQAFARAALITDVGIALATELETAGQKWS
                     LGFPPKFQRVDLFNYNVLVRNYDSSAFKGDRYHNTKNGINADIGASTNLDDNWTLGLV
                     AQNLIPRSIETKEVNGITETFRIRPQVTAGVSWHNAMFTTAFDVDLTPASGFTSDSNR
                     QFAAIGAEFNAWKWAQLRAGYRQNLAGNDGSAFTAGVGISPFDVVHLDVAGLIGTDNT
                     YGAVAQFQFTF"
     gene            1593..5450
                     /gene="sigA"
                     /locus_tag="JN078_003610"
     CDS             1593..5450
                     /gene="sigA"
                     /locus_tag="JN078_003610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease autotransporter toxin SigA"
                     /protein_id="HAY9042673.1"
                     /translation="MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSI
                     YGSYGETAFAAMLDINNIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVP
                     DFSAVSNKGATTSIGGAYSVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRL
                     NKFVVETTGVTESADFSLSPEDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLF
                     GQNYNPDLLSASLFNLDWKNKSYIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHG
                     VTSTVGFISSTNIAWTNYSLFNNILVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVS
                     GGGELTLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGD
                     NLHKIGSGTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSES
                     GNGEIYFTRNGGTLDLNGYDQSFQKIAATDAGTTVTNSNVKQSTLSLTNTDAYMYHGN
                     VSGNISINHIINTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGN
                     NNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNL
                     ENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLRSGDSA
                     GESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAIE
                     LAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQNYAWVNGNIKSDKKASILF
                     GVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQS
                     LKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGS
                     NNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEH
                     TTWTLTGYKVAENTASSSAAKSYMSGNYKAFLTEVNNLNKRMGDLRDTNGEVGAWARI
                     MSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSV
                     GAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEAGYRYHV
                     TEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFSGKDW
                     KVTARAGLGYQFDLFANGETVLSDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFGLE
                     FEKSAFGKYNVDNAINANFRYSF"
     gene            5497..6079
                     /locus_tag="JN078_003611"
                     /pseudo
     CDS             5497..6079
                     /locus_tag="JN078_003611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000291745.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(6482..6882)
                     /locus_tag="JN078_003612"
                     /pseudo
     CDS             complement(6482..6882)
                     /locus_tag="JN078_003612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000998048.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
     gene            6886..7461
                     /locus_tag="JN078_003613"
                     /pseudo
     CDS             6886..7461
                     /locus_tag="JN078_003613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001368704.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT         2207 a         1707 c         1759 g         1861 t
ORIGIN      
        1 acgacatttc ttcgataacg tgtgttcttt ctcctgcatc agcttataca gggaagtcag
       61 gagcggtcta ctctgcattt gcctgaccgc caggcgttca gacaccggta acccgcgtat
      121 atcgtgctct atggcgtaca gttcaccgat tagtttcaga gcttcttccg ccgtcgcgct
      181 tttagtactg atatatacat cgtggatttt gcgtcgcgca tgagcccagc atcctgcttc
      241 cgtccgtcgg cgcgcagctc tccaatccgg ataatatcac cgacaacgcc gaccggatca
      301 gtgatgagtg gaaggccttc gaccgcgcca tcgaaagtaa ccacggtgtt cctgaggctg
      361 ccgcacgcct gaaagaacac ctccgggact tccgtaacac acatgccgcc gcacagctgg
      421 gcgtttctgc tgtggcggcc cttcccggtg atcgcctctc tgccgcactg atggttaaat
      481 cacacggcac cgtcagtgtc gacggtaaag tctctgatgc tgacctcact tacctggaag
      541 aggtggcaaa cagcaccggg caggaggtgg acaaaagccg cctgacatca caggcctttg
      601 cccgcgcggc actgatcact gatgtgggta ttgctctggc tacggaactg gaaacggccg
      661 ggcagaaatg gtctctgggc ttccccccca aattccagcg cgtcgacctg ttcaactaca
      721 acgtgctggt cagaaattat gacagcagcg ccttcaaagg cgaccgctac cacaacacga
      781 aaaatggcat caacgccgac atcggtgcca gtacgaacct ggatgacaac tggacgctgg
      841 gactggtcgc acagaacctg atcccccgta gtattgagac aaaagaagtg aacggtatca
      901 cggaaacctt caggatccgc ccgcaggtga cggccggtgt ctcctggcac aacgcgatgt
      961 tcaccaccgc atttgatgtg gatctgaccc cggccagcgg tttcacctcc gacagcaacc
     1021 gtcagtttgc cgccattggc gcagaattta atgcctggaa atgggcacag ctgcgcgccg
     1081 gttaccgtca gaatctggcc ggtaacgacg gcagtgcatt cacggccggg gtggggatct
     1141 caccgtttga tgtggttcac cttgatgttg caggcctgat cggcacggac aacacttacg
     1201 gtgcggtcgc acagttccag ttcaccttct gagttccacc tgcaaaacag catgcacatt
     1261 atcgctgcat gttgtttcca tcatcaaaag tctgtcggac atcgacagac ttaactcccc
     1321 cggataatac agaaaacctg taaaggattg accggaaaca acaaagatca aattttgatc
     1381 gcaaaggtca aaatacaaac accaggtgat caatatctga ccaatcaatc acttgtgctt
     1441 atcttttttt tcattttgtt acatctgtca tacaaatata actgacagtg attatcatta
     1501 tacccttatc agttacgtac catgactgat agttccccgt tgtaattaaa tgctatccca
     1561 taaccacaac tcagaaatat cggagttcac gtatgaataa aatttattca ctgaaatata
     1621 gtcatattac aggtggatta gttgctgttt ctgaactgac ccggaaagtt agtgtcggta
     1681 catcaagaaa gaaagttatc ctcggtatta ttttatcctc aatatatgga agttatggtg
     1741 aaacagcatt tgcagcaatg ctggatataa ataatatatg gacccgcgat tatcttgacc
     1801 ttgctcaaaa cagaggagag ttcagaccgg gtgcaacaaa tgttcaatta atgatgaaag
     1861 atggaaagat atttcatttt ccagaactac ctgtacctga tttttctgct gtttccaaca
     1921 aaggtgcaac aacatcaatt ggaggtgcgt acagtgttac tgcgactcat aacggtacac
     1981 agcatcatgc aataacaaca cagtcatggg atcagacagc atataaagca agtaacagag
     2041 tatcatctgg cgacttttcg gttcatcgtc tgaataaatt cgtcgtggaa acaacagggg
     2101 ttacggagag tgccgacttc tcactttctc ccgaagatgc gatgaaaaga tatggcgtaa
     2161 actacaacgg taaggaacaa ataattggct tcagagcagg tgccggaaca acctcaacga
     2221 tattaaacgg caaacaatat ctgtttggac aaaactataa tcccgacttg ttaagcgcaa
     2281 gtctttttaa tctggactgg aaaaacaaga gttacattta taccaacaga acccctttta
     2341 aaaactcacc aatttttggc gatagtggtt ctggttctta tctatatgat aaagaacaac
     2401 aaaaatgggt tttccatggt gttaccagta cagttggttt tatcagtagt accaatatag
     2461 cctggacaaa ctactcgtta tttaataata ttctggtaaa caatttaaaa aagaatttca
     2521 caaacactat gcagctggat ggtaaaaaac aagagttatc atcgattata aaagataagg
     2581 acctgtctgt ctcaggagga ggggaattaa cgctcaagca ggataccgat cttggcattg
     2641 gcgggcttat attcgataag aaccagacat ataaagtgta cggaaaagat aagtcttata
     2701 aaggtgccgg gatagatatt gataataata ccaccgttga atggaatgtt aagggcgttg
     2761 ccggagataa tctgcataaa ataggtagtg gtactctgga tgtaaaaata gcacagggaa
     2821 ataaccttaa aataggtaat gggactgtca tccttagtgc tgaaaaagcc ttcaataaaa
     2881 tttacatggc cggaggtaaa ggtacggtaa aaataaatgc caaagacgct ttaagcgaaa
     2941 gcggtaatgg cgaaatctat tttaccagaa atggcggaac actggatcta aacggctatg
     3001 accagtcatt tcagaaaatc gcagcaacag atgcgggaac aaccgtaacg aactcaaacg
     3061 tgaagcaatc aacattatca cttactaata ctgatgcata tatgtaccat gggaatgtat
     3121 caggtaatat aagcataaat catattatca atactaccca gcaacataac aataatgcca
     3181 atctgatctt tgatggctca gtcgatatca aaaacgatat ctctgtccgg aatgcacagt
     3241 taacattaca aggacatgcg acagaacatg ccatatttaa agaaggcaat aacaactgtc
     3301 caattccttt tttatgtcaa aaagactatt ctgctgccat aaaggaccag gaaagcactg
     3361 taaataaacg ttacaatacg gaatataagt ccaacaatca gatagcctct ttttcccagc
     3421 ccgactggga aagtcgtaaa tttaatttcc ggaaattaaa tttagaaaac gcaaccctga
     3481 gtataggccg ggatgctaat gtaaaaggac acatagaggc taaaaactct caaattgttc
     3541 tgggaaataa aactgcatac attgacatgt tctcaggaag aaacattact ggcgaaggtt
     3601 ttggattcag acaacagctt cgctccgggg attcagcagg cgaaagtagt ttcaacggca
     3661 gtctgagtgc tcaaaacagc aaaataactg ttggtgataa atcaactgtt actatgactg
     3721 gtgcattatc cttaattaat acagacctga ttatcaacaa aggagctact gttaccgccc
     3781 agggaaaaat gtatgtagat aaagctattg aactggccgg aaccctgaca ttaacaggca
     3841 cccctacaga aaataataaa tacagcccgg caatctatat gtcagatgga tataatatga
     3901 cagaagatgg tgccacgtta aaggctcaaa attatgcctg ggtcaatggt aatataaaat
     3961 cagacaaaaa agcatctatt ctgtttggtg ttgaccagta taaagaagat aacctggaca
     4021 aaaccacaca cacaccgctg gctacaggtt tgctgggtgg ctttgatact tcttataccg
     4081 gaggtattga tgctcctgct gcctcagcca gcatgtataa caccttatgg agagtaaacg
     4141 gacagtcagc cctgcaatca ttaaaaaccc gcgacagtct tttgttgttt agtaacatag
     4201 agaattcggg tttccatact gtgacagtaa acacactgga tgccactaat actgctgtga
     4261 ttatgcgggc tgatctgagc cagtctgtaa atcaatcgga taaactcatt gttaaaaatc
     4321 agttaaccgg aagcaataac agtctgtcgg tcgatataca gaaagtggga aataataact
     4381 caggattaaa cgttgacctg ataacagccc caaaaggaag caataaagag atatttaaag
     4441 ccagtactca ggccataggt ttcagcaaca tatctcctgt gatcagcacg aaagaggatc
     4501 aggaacatac cacgtggacc ctgaccggat ataaggtggc tgaaaataca gcatcttcca
     4561 gtgcagcaaa atcgtatatg tccggtaatt acaaagcctt cctgacagaa gtcaacaacc
     4621 tgaataaacg aatgggggat ctgcgtgaca ccaatggcga ggtcggtgca tgggcccgca
     4681 tcatgagcgg agcaggttca gcttctggtg gatacagtga caactacacc catgtgcaga
     4741 ttggtgtgga taaaaaacat gagctggatg gacttgacct tttcactggt ctgactatga
     4801 cgtataccga cagtcatgcc agcagtaatg cattcagtgg caagacgaag tccgtcgggg
     4861 caggtctgta tgcttccgct atatttgact ctggtgccta tatcgacctg attagtaagt
     4921 atgttcacca tgataatgag tactcagcga cctttgctgg gctcggaaca aaagactaca
     4981 gttctcattc cttgtatgtg ggtgctgaag caggctaccg ctatcatgta acagaagact
     5041 cctggattga gccgcaggca gaactggttt atggggccgt atcaggtaaa cggttcgact
     5101 ggcaggatcg cggaatgagc gtgaccatga aggataagga ctttaatccg ctgattgggc
     5161 gtaccggtgt tgatgtgggt aaatccttct ccggtaagga ctggaaagtc acagcccgcg
     5221 ccggccttgg ctaccagttt gacctgtttg ccaacggtga aaccgtactg agtgatgcgt
     5281 ccggtgagaa acgtatcaaa ggtgaaaaag acggtcgtat tctcatgaat gttggtctca
     5341 acgccgaaat tcgcgataat cttcgctttg gtcttgagtt tgagaaatcg gcatttggta
     5401 aatacaacgt ggataacgcg atcaacgcca acttccgtta ctctttctga taacagcccg
     5461 ggccgcgttt gcggcccttc ttctaccgga gagaatatgt attaccctgt gacagactat
     5521 atcgctcttg ctctcattat tagctttctt tttctgacat tatttatctg cctgttatgc
     5581 cttaaacatg agcgaataaa aaaagaaact atcaggcaaa aaaaatgcac atattctgga
     5641 gcatggctgg aatgcaactg agttctcatg gttccgatac ggacagtata acgaaacggg
     5701 tatttacatc tcgatcgaga agaccattat cattacaatc accgtttctg gtgggtgctt
     5761 taaaaaagaa tacagcattg tctcccacat gctggtcact gacaccataa cagaggccac
     5821 cctgtacgaa aacgggctgt atacgcgcca catcagactc agtcgcccag tatctgacag
     5881 caaatacccc ttgccacccg gatctcagct cattaaaaat atgaccttac gactgcgcct
     5941 gcaggatcag caggaagaaa catccgtgac attatttcag ggaaaaatga gtaccgacgg
     6001 aaataactat tacatcatca aaggtaaagt aagctcagta cttctgttat taaaaatgct
     6061 gcagattaat cacgcctgat ctctgtcccg gtattttagc ccgaggtata ttctgaaata
     6121 tcattcatca tgaccggcgt ttatacaaac gccggtcatt cgctaacagc ttcaccgttc
     6181 cttcccccat ccaggttccg catgagcgtg ttgtaatgtt cataagcgta ttatcgtaag
     6241 cttccgggga actcatattg acgcgttttt caggcgcgcg tcatcggcgg cgcatacgaa
     6301 cgatcgtggt ttgataacgg ttgatttatt ttgttgcaca ggggcgatcg ctaggcaggt
     6361 accggaggcg ggctctgaag tactgagtag ggtgatcgcg tcaggccgcg aagtactgac
     6421 tcggggatta atagcaggtg atgagtaagc gtacagcgag ggccgtattg acggggatgt
     6481 gttattcagc tggcagtgct atgcgccacg gaagcagttc gctgacccgg ttgaccggcc
     6541 agtctgctat gacgccaagc acatggcgaa ggtagctttc tggatccacg tcattcagtt
     6601 tgcacgtccc gatcaggctg tacagtagcg ctccccgctc accaccatgg tcagagccga
     6661 agaacaggaa gtttttacga cccagactga ccgcccgcaa ggcattttca gcgatgttgt
     6721 tgtcgatttc cacccagcca tcgttcgcat agtacgtcag tgccggccac tggttaagtg
     6781 cgtacgcgaa cgccttcgcc aactctgagt gtcgcgacag ggtcttcatc ttttccgcaa
     6841 ccagctttcc agggatttca acagcggttt cgtttttcgc tgacaccatg gagggagtgg
     6901 ttaaaagagc aacgagaaag tggtaattat aacgccagcc ggatatggcg ggaaatggtg
     6961 gcccggggat ttacaggcag tgaaaccatc gtcagggatg cggttgccaa atggcgtaaa
     7021 ggctggaacc caccggttac tactgccgtc agacttcctt cagtgtcccg ggtaagccgc
     7081 tggttgatgc cctggagaat aaccagggat gaagaaaatt atgcttcccg atttattagt
     7141 ctgatgtgtg aaaaagaacc tgagctgaaa atagcgcagc aactggcact cgagttctac
     7201 cgtattctga aaacccaaaa taaatcacag ctaagcagtt ggttcactcg agtccacgaa
     7261 agcggttcag cagaatttcg gcgcgtggcg gcggggatgg aagctgatgc tgcagctata
     7321 tgtgaggcaa tcagtagtcg ctggagtaat ggtgttgtcg aaggtcatgt aaatcgcctg
     7381 aagaagatgc tgaaacgcca gatgtatggt cgagcaggat ttgaactact caggcagagg
     7441 gtaatgagtc cactggcatg aaaatctcca cccaggttgc ggaagagcca cttttcatcc
     7501 gtcgttgaca gttataccgc cagtcagaaa tata
//
LOCUS       DADMJB010000182         7526 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.185, whole genome shotgun sequence.
ACCESSION   DADMJB010000182 DADMJB010000000
VERSION     DADMJB010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7526)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7526)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7526
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.185"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..590
                     /locus_tag="JN078_003614"
     CDS             <1..590
                     /locus_tag="JN078_003614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707232.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAY9042674.1"
                     /translation="INQLADKQTIKQTLFARQPAKIHKPYPTNSKIIMGDVLNHAALK
                     QAMQGQDVVYANLTGEDLDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFGEWNN
                     AVIGEPLKPFRRAADAIEASGLEYTILRPAWLTDEDIIDYELTSRNEPFKGTIVSRKS
                     VAALITDIIDKPEKHIGENIGINQPVTDGDKPLFM"
     gene            900..1628
                     /gene="mpaA"
                     /locus_tag="JN078_003615"
     CDS             900..1628
                     /gene="mpaA"
                     /locus_tag="JN078_003615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415842.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide amidase MpaA"
                     /protein_id="HAY9042675.1"
                     /translation="MTVTRPRAERGAFPPGTEHYGRSLLGAPLIWFPAPAASRESGLI
                     LAGTHGDENSSVVTLSCALRTLTPSLRRHHVVLCVNPDGCQLGLRANANGVDLNRNFP
                     AANWKEGETVYRWNSAAEERDVVLLTGDKPGSEPETQALCQLIHRIQPAWVVSFHDPL
                     ACIEDPRHSELGEWLAQAFELPLVTSVGYETPGSFGSWCADLNLHCITAEFPPISSDE
                     ASEKYLFAMANLLRWHPKDAIRPS"
     gene            complement(1603..2568)
                     /gene="ycjG"
                     /locus_tag="JN078_003616"
                     /pseudo
     CDS             complement(1603..2568)
                     /gene="ycjG"
                     /locus_tag="JN078_003616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707230.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-Ala-D/L-Glu epimerase"
     gene            2687..3193
                     /gene="tpx"
                     /locus_tag="JN078_003617"
     CDS             2687..3193
                     /gene="tpx"
                     /locus_tag="JN078_003617"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HAY9042676.1"
                     /translation="MSQTVHFQGNPVTVANSIPQAGSKAQTFTLVAKDLSDVTLGQFA
                     GKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISADLPFAQSRFCGAEGLNN
                     VITLSTFRNAEFLQAFGVAIADGPLKGLAARAVVVIDENDNVIFSQLVDEITTEPDYE
                     AALAVLKA"
     gene            complement(3237..4778)
                     /gene="tyrR"
                     /locus_tag="JN078_003618"
     CDS             complement(3237..4778)
                     /gene="tyrR"
                     /locus_tag="JN078_003618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator TyrR"
                     /protein_id="HAY9042677.1"
                     /translation="MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFA
                     ELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKV
                     DMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLME
                     ITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVE
                     QAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF
                     GHAPEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVR
                     VICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ
                     GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATV
                     AVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ
                     KKNEE"
     gene            complement(4926..5987)
                     /locus_tag="JN078_003619"
     CDS             complement(4926..5987)
                     /locus_tag="JN078_003619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01620 family protein"
                     /protein_id="HAY9042678.1"
                     /translation="MTEPLKPRIDFDGPLEVDQNPKFRAQQTFDENQAQNFAPATLDE
                     APEEEGQVEAVMDAALRPKRSLWRKMVMGGLALFGASVVGQGVQWTMNAWQTQDWVAL
                     GGCAAGALIIGAGVGSVVTEWRRLWRLRQRAHERDEARDLLHSHGTGKGRAFCEKLAQ
                     QAGIDQSHPALQRWYASIHETQNDREVVSLYAHLVQPVLDAQARREICRSAAESTLMI
                     AVSPLALVDMAFIAWRNLRLINRIATLYGIELGYYSRLRLFKLVLLNIAFAGASELVR
                     EVGMDWMSQDLAARLSTRAAQGIGAGLLTARLGIKAMELCRPLPWIDDDKPRLGDFRR
                     QLIGQVKETLQKGKTPSEK"
     gene            complement(5984..7381)
                     /locus_tag="JN078_003620"
     CDS             complement(5984..7381)
                     /locus_tag="JN078_003620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcjX family protein"
                     /protein_id="HAY9042679.1"
                     /translation="MKRLKNELNALVNRGVDRHLRLAVTGLSRSGKTAFITAMVNQLL
                     NIHAGARLPLLSAVREERLLGVKRIPQRDFGIPRFTYDEGLAQLYGDPPAWPTPTRGV
                     SEIRLALRFKSNDSLLRHFKDTSTLYLEIVDYPGEWLLDLPMLAQDYLSWSRQMTGLL
                     NGQRGEWSVKWRMMCEGLDPLAPADENRLADIAAAWTDYLHHCKQQGLHFIQPGRFVL
                     PGDMAGAPALQFFPWPDVDTWGESKLAQADKHTNAGMLRERFNYYCEKVVKGFYKNHF
                     LRFDRQIVLVDCLQPLNSGPQAFNDMRLALTQLMQSFHYGQRTLFRRLFSPVIDKLLF
                     AATKADHVTIDQHANMVSLLQQLIQDAWQNAAFEGISMDCLGLASVQATTSGIIDVNG
                     EKIPALRGNRLSDGAPLTVYPGEVPARLPGQAFWDKQGFQFEAFRPQVMDVDKPLPHI
                     RLDAALEFLIGDKLR"
BASE COUNT         1860 a         2078 c         1812 g         1776 t
ORIGIN      
        1 tgattaatca actggcagat aaacaaacca ttaaacaaac tttatttgcc cgtcagccag
       61 caaaaatcca caaaccctat ccaactaata gcaagattat tatgggagat gtactgaatc
      121 atgcagcact gaagcaggcc atgcagggac aggacgttgt gtatgccaac cttacggggg
      181 aagatttaga tattcaggca aattcagtga tcgctgcgat gaaagcctgt gatgttaaac
      241 gtctgatctt tgttctttcc ctcggtattt atgatgaagt tccaggaaaa tttggcgaat
      301 ggaataatgc agttattggt gagcccctaa aaccattccg cagggctgcg gatgcaattg
      361 aggcttctgg actggaatat acaattcttc gccctgcctg gctgactgat gaagatatta
      421 ttgattatga gcttacctca cgcaatgaac cattcaaagg tacgatcgta tcacgtaaga
      481 gtgtcgcagc attaatcaca gatatcatcg ataaacctga gaaacacatt ggtgagaata
      541 taggtatcaa tcaacccgtg actgatggtg acaagccatt attcatgtaa atcaattaca
      601 tagttaccat cgtaatgtac tatgtgcagt acgatttatt aaacttatta aggtgaactg
      661 atcaatccga tgcgattaac atgtgtagaa ccagtaagaa taaaatacgc catgtatata
      721 acattacgac ttacatctaa gtcagcataa ttctaatatc tgcacatcaa taaaaatgca
      781 aacaacttcc ggcaaaaaaa gtgatacaag atcgatgaca tagcgttgaa gaaaaggatt
      841 tgataatccg caaaatttgc acaacactgc ctgtaatact tcctgaacca gagacgatca
      901 tgaccgtaac ccgcccacgc gccgaacgcg gcgcatttcc gcccggaaca gaacattacg
      961 gacgttcatt attgggcgcg ccgttaatct ggtttcctgc ccctgcagcc agccgcgaaa
     1021 gtggtttgat tctggctggc actcacggtg atgaaaactc ttcggtcgtc acgctctcct
     1081 gtgctctgcg gacgttgaca ccttctttgc gccgccatca tgtggtgctg tgtgtgaatc
     1141 ctgacggctg ccagctgggg ttacgggcca atgctaatgg tgtggattta aacagaaact
     1201 ttccggcggc gaactggaag gaaggtgaaa cggtttatcg ctggaacagc gccgctgaag
     1261 aacgtgatgt cgtattactg acaggtgaca aacctggctc agaacctgaa acccaggcgc
     1321 tgtgccagct tatacaccgc attcaacctg cctgggtggt ctcattccac gatccactgg
     1381 cctgtattga agatcccaga cacagcgaat taggcgaatg gctggcccag gcgtttgaat
     1441 tgcctctggt aaccagcgtc ggttatgaaa cgcctggctc tttcggcagt tggtgtgcag
     1501 atctcaactt gcattgcatc accgcagagt ttccgcccat ctcctccgac gaagccagcg
     1561 aaaaatatct ctttgcgatg gcaaacttgc tgcgctggca tcctaaagat gcaattcgcc
     1621 cgtcgtgaac tgaagcgccg gttccacatc taccgccagc caggtcggtc cgtcaagatc
     1681 ggcgaaactg acctgcggca ccagcggtaa agcggcgcta atggcacgag aggtacacaa
     1741 catgcagccc agcatcagac tgaaaccttg tgcacgcgct tcagtcgcca gcgccagcgc
     1801 ttccgtcaga ccaccggttt tatcgagctt aatgttaacc atctcatagc gccctttcag
     1861 cgccttcaga ttgctacgtg tatgacaact ctcatcagca caaatcggca acggatgaat
     1921 aaaattctcc agcgccgcat cgtcctgcgc aggaaggggt tgttcaagca tcgcaacgcc
     1981 taaatccgcc aatagctggc aacgcgccgc caacccttct gcacgccagg attcatttgc
     2041 atcaacgatc agcgtcgcat cgggcacagc tgtgcgaatt gccaccatcc gctcactaat
     2101 aagatggtta tccagcttca ctttcagtaa tttcgcgcct gcctgccaga gtgttgatgc
     2161 actattggcc atctgatcag gcgtaccgat gactaccgtc tgtgcagtga taactgtctc
     2221 gggaagcgtt atgccgatca aatcagccag cgattgctgc tgttttcgcg cggccagatc
     2281 ccacaatgca caatccagcg cattacgtgc tgcgccggca gggagaattt tttgcaactc
     2341 ctcccgtgtc agccctttct ctaattgcga cacgacgctc ataatttgcg ccattaccga
     2401 ggcatcactt tctccataac gcggatacgg cgtgcattcg ccggtgcctt taataccctc
     2461 ttcttccagt tcaaccacca ccacgcgcgc ttcactgcga cttccccggg caatcacaaa
     2521 cggggtatgt aagggctagg cttcctcaaa taccttaacg gttctcatct ttactccttg
     2581 ttgtcgcggt ggtctgcgga ttaagcgcaa atagcgtttg ctgtgttatt gacagttagc
     2641 ataaactagg tgtgacgtta actatatgta aacaggaaag ataatcatgt cacaaaccgt
     2701 tcatttccag ggcaacccgg ttacagtcgc caattccatc ccgcaggcgg gtagcaaagc
     2761 gcagactttt actctcgtgg caaaagatct gtctgacgtc accctcggtc agtttgcggg
     2821 taaacgcaaa gtgctgaaca ttttcccgag tattgatacc ggtgtttgcg ccgcatcagt
     2881 acgtaagttt aaccaactgg caaccgagat cgacaacacc gttgtgctgt gtatttctgc
     2941 cgatctgccg ttcgcccagt ctcgtttctg cggcgcagaa ggtctgaaca acgttatcac
     3001 cctctccact ttccgtaacg ctgaatttct gcaagccttc ggtgtggcaa ttgctgatgg
     3061 cccactgaaa ggtctggcag cgcgtgccgt tgtggttatt gacgaaaatg acaatgtgat
     3121 tttcagccag ctggtggatg aaatcaccac cgagccggat tacgaagcag ctctggctgt
     3181 actgaaagca taagttaata tgcctgatgg tgttgcacca tcaggcatat tcgcgcttac
     3241 tcttcgttct tcttctggct taagccatat tcccgcaact tattggcaat cgcggtatgt
     3301 gaaacgccga gacgttttgc cagtttgcgc gtgctgggat aattgcgata aagctgggtt
     3361 aataccgagc gttcaaaacg gctggtgatt tcgtccagcg aaccttccat cgcatcttcg
     3421 cccacggcta ccgttgcggc gtcataatcc ggcaacaaaa tatcctgtgg acgcagctca
     3481 taaccgtcca gttgtgtcag tgcgcgatat atagcgttct ttaactgccg cacatttccc
     3541 ggccacgcat aacgcgtaag tacagtattc aggtcagcgg ccagtttcgg acgcggcacg
     3601 ccctgctcgt cggcaaagcg ggcgacgaac agctcagtta acggcatgat gtcctgcgga
     3661 cagtcacgta gcggcggcag attgagcgtc aacacgttca gacgataata gagatcttca
     3721 cggaacatgc ctttttgcac cagttcgacc agattcttct gcgtagcgca aatcacccgc
     3781 acatcgacat gcacctcatg gtcttcgcca acccgacgga aagtgccatc attaagaaaa
     3841 cgcagtaatt tcgcctgcat ccgtggtgac atttccccta tttcatccaa cagcaccgaa
     3901 ccaccgttcg cctgctcaaa gaatcctttc ttcccttccg gagcatgacc aaacagttca
     3961 ctctcgaccg catcttccgg tatagacgca cagttcagcg ccaggtaagg tttgcccgct
     4021 ctggggcttg cctgatggca ggcgtaggca aagagatctt tacctgtacc tgtgtcaccc
     4081 gtaatcagca gcggcgcgct tagcatcgcc agtttctgcg cctgttcgac aacatgcttc
     4141 attttcgggc tgacggcgac aatttgactg aaggcgctga cgtcctgggc ggcgacattt
     4201 tgcaactggc ggcccatacg aatcgttgat cgcaacatca ccaccgcacc ggtcaggacg
     4261 tgttgatcat tttcatcctg aagataaaca ggcgtaatct ccatcaggaa attctgccca
     4321 ttaataacga catgctcgtt atgcgaatct tgcggttcgc tttccagcca acgtaaaaaa
     4381 ttaaagccgt taatcaattg tgcggcggta tggttgcgca ggcgatccaa tttttgccca
     4441 aaaagctgac agctcgccgg gttcgccata tccactttgc ttttcatatc gacagagagc
     4501 acaggttcgg gcaacgcctc cagtaacgcg ctcaacgcca gatgctcacg ttcggaaggc
     4561 atccacggga cagtacgcac atcggtaaca cctgcaatac ggcgtatttc ggccatcaga
     4621 ctgctgaaac tctcaaactc cagttcagca aaattgaggt agattcgccc aatgggatca
     4681 atctcaatac cgcgtaaatc aatgcctctt agcacgagta gatcgagtaa ttcgcgggtc
     4741 agaccgagtc ggtcttcaca aaagacttcc agacgcatgg gaaccttcac ctgaaaaaag
     4801 aacaattaat atgatgatat gacactattt ggatagcagg aaggtttctg tcaacaatca
     4861 ttgacacaaa gacggaaaaa cgggcacttc ggcgtaaaga tatccggtca gcacccgata
     4921 ttgcattatt tttcgctggg cgttttgcct ttttgcagcg tttctttcac ctgaccgata
     4981 agctgacgac ggaaatcccc gaggcgaggt ttgtcatcgt caatccacgg cagcgggcgg
     5041 caaagctcca tagctttaat cccgagtcgt gccgtcagaa gtccagcacc aattccctga
     5101 gctgcgcggg tagacaaacg agcagcgaga tcttgcgaca tccagtccat ccccacttcg
     5161 cgcaccagtt cgctggctcc ggcaaaagcg atattcagca ataccagctt aaacagacgc
     5221 aaacggctgt aataccccag ttcaatgcca tacagcgtgg cgatgcgatt aattaaacgc
     5281 agattgcgcc aggcgataaa cgccatatcg accaacgcca gcgggctgac cgcaatcatc
     5341 aacgttgatt ccgccgccga acggcagatt tcgcgccgcg cctgggcatc taaaactggc
     5401 tggaccaaat gcgcatacaa actgaccact tcacggtcgt tttgcgtttc atggattgag
     5461 gcataccagc gttgcagcgc tggatgagac tgatcaatac ccgcctgctg cgccagtttt
     5521 tcgcaaaatg cgcggccttt gcccgtgccg tggctgtgca acaaatcgcg cgcttcgtcg
     5581 cgttcatggg cgcgctgtcg caagcgccat aagcgccgcc actctgttac cacagaacct
     5641 acgccagcgc cgataatcaa tgccccagcg gcacatccac ccagcgccac ccagtcctga
     5701 gtttgccagg cattcattgt ccactgtaca ccctgcccga caacgcttgc gccaaacaga
     5761 gccagcccgc ccatcaccat tttgcgccac aggctgcgtt tcggacgtaa cgctgcatcc
     5821 attaccgctt caacttgccc ctcttcttca ggcgcttcat cgagcgtggc cggggcaaaa
     5881 ttttgcgcct gattttcgtc aaaggtctgc tgcgccctga attttggatt ctgatcgacc
     5941 tccagcggac cgtcgaaatc aatacgtggt tttaacggtt cggtcatcgc aatttatctc
     6001 ctattaaaaa ttccagcgcg gcatcaagac gaatatgcgg cagcggtttg tcgacatcca
     6061 tcacctgcgg gcgaaacgct tcaaactgga acccttgttt gtcccagaac gcctgaccgg
     6121 gcaaacgcgc aggaacttca ccgggataaa cggtgagtgg cgcaccatcg ctgagccggt
     6181 taccgcgcaa tgccggaatt ttctcgccgt tgacgtcaat aatgccgctg gtggtcgcct
     6241 gcaccgaggc cagccccagg caatccatac taatcccttc aaacgccgca ttttgccagg
     6301 catcctgaat cagttgttgc agtaatgaaa ccatattggc gtgctgatcg atggtcacat
     6361 ggtccgcttt agtggcagca aacaatagct tatcgataac cggcgaaaac aaacgccgga
     6421 acaaggtacg ctgcccgtag tggaaacttt gcatcagctg cgtcagtgcc agacgcatat
     6481 cattaaatgc ctgtggccca ctgttgagag gttgcaggca atcaaccagc acaatctggc
     6541 ggtcaaagcg cagaaaatga ttcttataga accccttcac caccttctcg cagtaataat
     6601 taaaccgctc gcgcagcatt ccggcattgg tgtgcttatc ggcctgcgcc agtttggact
     6661 cgccccaggt atcgacatcc ggccacggga agaattgcag cgcgggcgca cctgccatat
     6721 ctcctggcaa gacaaagcgc cctggctgaa taaagtgcag cccctgctgt ttacagtggt
     6781 ggagataatc ggtccacgcg gcggcaatgt ctgccagccg gttttcgtcg gcaggtgcta
     6841 gcgggtccag cccttcgcac atcattcgcc atttgaccga ccattcgccg cgctgaccat
     6901 tgagtaagcc cgtcatctgg cgtgaccagc ttaaatagtc ctgcgccagc atcggcaggt
     6961 cgagcaacca ttcgccggga taatccacaa tctccagata cagcgtggag gtgtccttga
     7021 agtggcgtag cagcgaatcg ttcgatttaa aacgtagcgc caggcggatt tcactgacgc
     7081 cgcgcgttgg cgtcggccag gcgggaggat cgccatataa ctgcgccagt ccttcatcat
     7141 atgtgaagcg cggaatgcca aagtcacgct gaggaatgcg ttttacgccc agcaggcgct
     7201 cttcacgcac cgcgcttaac agcggcaagc gtgctccggc gtgaatattg agcaactgat
     7261 tgaccatagc agtgataaac gctgttttgc cgctgcggct tagtccggtt acggcgaggc
     7321 gcagatgtct gtcgacaccc cgattcacca gcgcattaag ttcattttta agtcgcttca
     7381 ttgctgtcct gtgctgctct gaagaccaga aaaaaatcat tcgtaaggat atgaatgtgg
     7441 gggccaggcc attgattatc aactgcccgt gttgtcatcg acgggcgaac tccataagat
     7501 gtgcagcatt cacgttcgga cggagt
//
LOCUS       DADMJB010000183         7470 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.186, whole genome shotgun sequence.
ACCESSION   DADMJB010000183 DADMJB010000000
VERSION     DADMJB010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7470)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7470)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7470
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.186"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..339
                     /locus_tag="JN078_003621"
     CDS             <1..339
                     /locus_tag="JN078_003621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HAY9042680.1"
                     /translation="QTEAFLNAYGLSRFAPLGYDPRDLPIRDLAGYRKKGNHDGDPII
                     FYTFPAAFEQEIAKGFNTKQFAEVLKNAGMLTPPTSGRGYQGRVREDGRQIRVYVLNF
                     MAEESSQPEE"
     gene            714..1148
                     /locus_tag="JN078_003622"
     CDS             714..1148
                     /locus_tag="JN078_003622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000126714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HAY9042681.1"
                     /translation="MTAQISAYGRLVADPQTRTTTNGNNMAMARLAVSLPCNAAEAGE
                     STFWLGVIAFGKQADALAKHQKGDLVSVAGNMQLNQWTGQDGGTQQGYQVVADSVISA
                     RTVRPGGKAGQRGQATDALRRAQQPSRDEYDQRPPFDDETPF"
     gene            1159..1800
                     /locus_tag="JN078_003623"
     CDS             1159..1800
                     /locus_tag="JN078_003623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002436679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042682.1"
                     /translation="MSTQPIIIEFGSYRWPRHLAIHEADHAIAAWFFGIQEVEIALSG
                     NNRVAKTYLSGDVDECGAVAVWHANYPRNVAEVKSYTLSNDDTRLRLIDQVCRAMVIS
                     LAGIVAQSRYTGDDINALMETSGKADMKNVRDLSEVYRVAGGEDADIQRISLSRAEAL
                     IALKWWDVIALAKILENRNHMPASNFQRIMGDIDKPVPKPMTLAELDELVGEE"
     gene            1797..2147
                     /locus_tag="JN078_003624"
     CDS             1797..2147
                     /locus_tag="JN078_003624"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042683.1"
                     /translation="MKPYILAAGLISSAPALSAIHCGGFTIQPDRYRTTINGDVVHIV
                     DAQFYGAPRDFSQAAIKLLPDAITTTDRQYRLETQGGNALLELMTRENPPRVLNRERC
                     DAGLTSFGWYTSAP"
     gene            2841..3452
                     /locus_tag="JN078_003625"
     CDS             2841..3452
                     /locus_tag="JN078_003625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001205651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042684.1"
                     /translation="MRDRTRSYTTDLPRIGLPFLANMRSRLADAEPGTQLYTQTESGT
                     LYAFRQADSYAMTINGVTRAIRTTTTKAGYGVREWYACPHCMKRAAKLYIGKKDIGCR
                     ACWKLHYKSQSADILDRMRMKIRQQRCAIWGSNDLANNLFNDIRMFPKPKGMRWATFD
                     RKRAELPVMEMAYWQAFSPVVDRITGVIERKAGKAARGIGLTL"
     gene            3684..3869
                     /locus_tag="JN078_003626"
     CDS             3684..3869
                     /locus_tag="JN078_003626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002436675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042685.1"
                     /translation="MTPREIALLTIAKLEHGGHQLTQADQREIERSVNADIARRDRFR
                     EMMRAPAYQWKKPAPRR"
     gene            3990..4532
                     /locus_tag="JN078_003627"
     CDS             3990..4532
                     /locus_tag="JN078_003627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid pRiA4b ORF-3 family protein"
                     /protein_id="HAY9042686.1"
                     /translation="MYQLKITIRDSKPPIWRRVLVPEQIPFSELHAVIQLAFGWNDEH
                     LYMFEKGRKGDPGSEYRVWGEDESMGNAAITPLWAALQNDGDKLVYTYDFGDWWDCVI
                     VLEKQTHDTSNQPISCLRGKGTTPVENSGGLHGYNELLLQARESDNPEQAEIHNFLML
                     DIERRVYDLSSINDRLQTLN"
     gene            complement(4525..4884)
                     /locus_tag="JN078_003628"
     CDS             complement(4525..4884)
                     /locus_tag="JN078_003628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004202368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042687.1"
                     /translation="MRMTSRKKEILSYFEPDNLEWVTGEIGAPPFDVSGVAYLLHGMV
                     SFDKRHQLESTRRTLESMVAGGLLERVTVYESRQIRRGGETNATVVRYGLPGQCAVMR
                     DTGGADNAISGEYMRVS"
     gene            5316..6140
                     /gene="dinD"
                     /locus_tag="JN078_003629"
     CDS             5316..6140
                     /gene="dinD"
                     /locus_tag="JN078_003629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312547.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage-inducible protein D"
                     /protein_id="HAY9042688.1"
                     /translation="MNEHHQPFEEIRHYGTEGQEFWSARELAPLLDYRDWRNFQKVLA
                     RATQACEASNQAASDHFVETTKMVVLGSGAQRELEDVHLSRYACYLVVQNGDPAKPVI
                     AAGQTYFAIQTRRQELADDEAFRQLREDEKRLFLRNELKEHNKQLVEAAQQAGVATAI
                     DFAIFQNHGYRGLYGGLDQKAIHQRKGLKKNQNILDHMGSTELAANLFRATQTEEKLK
                     RDGVNSKQQANTTHFDVGRKVRQTIQELGGTMPEELPTPQVSIKQLENSVKITEKK"
     gene            6432..7049
                     /locus_tag="JN078_003630"
     CDS             6432..7049
                     /locus_tag="JN078_003630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312548.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HAY9042689.1"
                     /translation="MLLHILYLVGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGG
                     SVRDILLGHYPLGWVKHPEYVIIVATAAVLTTIVAPVMPYLRKVFLVLDALGLVVFSI
                     IGAQVALDMGHGPIIAVVAAVTTGVFGGVLRDMFCKRIPLVFQKELYAGVSFASAVLY
                     IALQHYVSNHDVVIISTLVFGFFARLLALRLKLGLPVFYYSHEGH"
     gene            complement(7046..7470)
                     /gene="ligB"
                     /locus_tag="JN078_003631"
                     /gene_synonym="yicF"
                     /pseudo
     CDS             complement(7046..7470)
                     /gene="ligB"
                     /locus_tag="JN078_003631"
                     /gene_synonym="yicF"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312549.2"
                     /note="this ligase is similar to LigA but it lacks the
                     C-terminal BRCT domain; catalyzes strand joining of nicked
                     DNA in the presence of a divalent cation and NAD+;
                     internal stop; incomplete; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
BASE COUNT         1997 a         1836 c         1908 g         1729 t
ORIGIN      
        1 cagacggagg cgtttttgaa tgcctatggg ctgagtcgat tcgcgccgct gggttatgac
       61 ccgcgcgatt tacccatccg tgatttagcc gggtacagga agaaggggaa ccacgacggc
      121 gacccgataa ttttctacac cttcccggca gcgtttgagc aggagattgc aaagggcttc
      181 aataccaaac agtttgccga agttctaaag aatgcaggaa tgcttacacc accaacgagc
      241 gggcgaggct atcaggggcg agtaagggag gatgggcgac agattcgcgt ctatgtactc
      301 aatttcatgg cagaggaaag cagccagcca gaagaataat tatttcttca catgcgtagt
      361 tttagtgttg tctcggttgt ctttgttgtc tcaatttgta attgagattg atttataagg
      421 attttatttt aatttctgag acaacaccga gacaacattt agccattttg agacaacagg
      481 gcgaaagtgt gtttttagtc tggcaggcag tgagacaaca tttatgccgg gtgagacaac
      541 acgaaattgc aaatgttgtc tcagcaaaac ccagacgtgg cgcggcctgt agagccgtga
      601 gacaacaaag acaacagaga caacactatt tttgcttact atgaaaaaaa atcggcaggt
      661 gtcccacatt aagaaatcgt cattagcaaa actaataatc cagtgagggg aaaatgacag
      721 cacaaatttc agcatacggg cggctggtgg cagatcccca gacccgcacc acaacgaacg
      781 gtaacaacat ggctatggcg cggctggcgg tgtctctccc ctgtaatgcg gcagaggcgg
      841 gagagtcaac cttctggctg ggcgttattg cttttgggaa gcaggccgat gcgctggcaa
      901 agcaccagaa aggcgacctt gtgagcgtgg caggcaatat gcaactcaac cagtggacag
      961 ggcaggacgg cggtacacag caggggtatc aggtagtagc cgacagtgtg atcagcgcca
     1021 gaacggtacg ccccggcggg aaggcaggac agcggggaca ggcaacggac gcgctgagac
     1081 gtgcgcagca gccatcccgt gatgaatacg accaacgccc accattcgac gatgaaacgc
     1141 cattctgaga gggaagatat gagtacgcaa cccatcatta ttgagttcgg cagctatcgc
     1201 tggcccagac atcttgcaat acatgaagca gatcatgcga tagccgcatg gtttttcggc
     1261 atacaggagg tagaaattgc gttatcgggt aataaccgag tggcaaaaac ctaccttagc
     1321 ggcgatgttg atgaatgtgg agctgtcgcg gtatggcacg ccaactatcc acggaatgtg
     1381 gctgaggtta agtcttacac cctctcgaat gatgacacca ggttacgtct gatagaccag
     1441 gtatgccggg ctatggttat ctctctggct ggtatcgtcg cgcaatcacg ctatacgggg
     1501 gatgatatta acgcactgat ggaaacgtcc gggaaagcag acatgaaaaa tgttcgtgat
     1561 ttatcagagg tataccgggt ggctggtggg gaggatgctg atatacagag aatatccctt
     1621 tcccgtgctg aggcgctgat tgccctgaaa tggtgggatg ttatcgcgct ggcgaaaata
     1681 ctggagaacc gtaaccatat gcctgccagc aacttccagc gcattatggg tgatattgac
     1741 aagcctgtac caaagcctat gacgctggct gaactggatg aattggtggg tgaagaatga
     1801 agccatacat tctggcagcc ggcctgatct cctcggcacc ggcactatct gctatccatt
     1861 gtgggggctt taccatacag ccagaccgtt atcggacaac gattaacggc gatgtggttc
     1921 atattgttga tgcgcaattt tacggcgcac cgcgagactt tagccaggcc gccataaagt
     1981 tattgccgga tgccattacc actaccgata ggcaataccg cctagagacg cagggaggca
     2041 atgccttgct tgagttgatg accagagaaa acccgccacg tgtgcttaat cgtgagcgct
     2101 gcgatgccgg gttaacaagt ttcggttggt acacttctgc gccgtgatgt tcgttccgag
     2161 cgcagcctaa aatattggac tgttcttgac ggatttaaaa ctctaatgga gccaagtcct
     2221 tgccagtagc gggctaggag cctaattgtg attcaggtcg tcaaaaatat tcaggtttgc
     2281 ggcattggtt cgcagtacgc agtccggtac gcggcaaaac tgcgcattta acgtgcgtac
     2341 cacctgacga attctaacgc cggcattgca aacagatgcg tgcgcaaaat ggctaagacg
     2401 tctgatattg ctggctttgg ctcaatcagt ttggaggtgg cggtatcagt acgatgctaa
     2461 tttttgctaa ggttttagta cgcaactcag gtacgcactc tcaccagata cgaaaccgat
     2521 tcgcagttgc gtaccagcct gtaaggcgca ttatcgctgg gtttctacag tcgaatgcag
     2581 tacgcaaagt ggaaaatcct ccgaatacga aacccgagca ttgcgcagta aattgcgaat
     2641 tgcgcagtta acaaaatatc tccgcaaaac gaaacggata tcaatgcgca aaccatcctc
     2701 aacccccgcg cggttactgg ctttattgat gtgaaattgc aaaattggtg cgcaatttac
     2761 agtaaaatac gcatattatt tcgtattcaa tttgcgcacc gttcgcagtt aatgcgcagt
     2821 aattcgcagg aggccagcca gtgagagaca gaacgcgcag ctataccacc gacctgcccc
     2881 gtatagggtt gccattcctt gcgaacatgc gtagcaggct ggcggatgct gaaccgggta
     2941 cgcagcttta tacccagacc gaaagcggaa cgttgtatgc cttccggcaa gccgacagct
     3001 acgccatgac aatcaacggc gtgacgcggg ctattcgcac cacaaccacg aaggccgggt
     3061 atggcgtccg ggaatggtac gcttgccccc actgtatgaa gcgggctgca aagctgtata
     3121 tcggcaagaa agacattggc tgccgggcgt gctggaaact tcactataaa agccagagtg
     3181 ccgacatact ggacaggatg cgcatgaaga tacgccagca gcgatgcgcg atatggggca
     3241 gcaatgacct tgccaataat ctgtttaatg acattcgcat gttcccaaaa ccaaagggga
     3301 tgcgctgggc tacgtttgac aggaagcggg cagagttacc agttatggag atggcttact
     3361 ggcaggcatt cagcccggta gtggacagaa tcacgggcgt tattgagcgt aaagcaggaa
     3421 aagcagccag aggcattggc ctgactctat aaaagcaaaa cgcccgcacg gggcgtcaga
     3481 gaacgggata gacttctgcg acaatttgca ttcgccgcca atatagcaag ccgtccacat
     3541 caagcaataa actatcaccg ggagggggag gccaaatctc tgcaatcctg agccttaagg
     3601 actgcccgcc ccatcgtttt ttcatacccg cgaaaaatga aatttaatcc gggcgtgttt
     3661 catccttcca gagggtatga cgtatgacac cacgcgaaat agccttattg accatcgcca
     3721 aacttgagca tggaggccac cagcttacac aggcagatca acgggagata gaacgctcag
     3781 ttaatgccga tatagcccgg cgcgacaggt tccgcgaaat gatgcgagca cctgcctacc
     3841 agtggaagaa gccagcgccg cgcaggtaga tacgggatta ttccgcatgt aacttatgcg
     3901 tattaagcaa atttccttta ttcaccttta cagaattgtg agtacgtcag tatcgttatc
     3961 cttccgattc gcatttattc aggatttgca tgtaccagct aaagataacc atccgagaca
     4021 gcaaaccacc tatatggcgg cgtgtgctgg ttccagagca aatccccttt agtgaacttc
     4081 acgcggtgat ccagttggct tttggctgga atgacgaaca cctgtatatg ttcgagaaag
     4141 ggcgtaaagg tgatcccggt agcgagtatc gcgtatgggg tgaggatgaa agcatgggta
     4201 atgcggcaat cacaccacta tgggcagcgc tccagaatga tggtgacaag ctggtttaca
     4261 cgtatgactt tggcgactgg tgggattgcg tcattgtgct ggagaagcaa acacacgata
     4321 cgagcaatca gcccattagc tgcctgcgtg ggaaaggcac caccccggtg gaaaactcag
     4381 gcggcttgca tggttacaat gaattgctat tacaggccag agagtctgat aatcctgagc
     4441 aggccgagat ccacaatttc ctgatgctgg atattgagcg ccgggtttac gacctgagca
     4501 gcatcaacga cagattgcag actcttaact gacccgcata tattcgcctg atattgcgtt
     4561 atcagcgccg ccagtatcgc gcataacagc gcactgaccg ggcaaaccgt agcgcacgac
     4621 cgttgcgtta gtctcaccgc cgcgccgtat ctggcgcgat tcatacactg tcacccgctc
     4681 aagcagtcca ccagcaacca tgctttccag tgtgcgccgg gttgattcga gctggtgacg
     4741 cttatcgaac gacaccatgc catgaagcag gtaggccaca cccgacacat cgaacggcgg
     4801 cgcaccaatc tcaccagtca cccattcgag gttatccggt tcaaagtagc taagtatctc
     4861 ttttttgcgg ctggtcattc tcatagctgg caggttcctt attgtgggat agcactatca
     4921 tacaataagg cgcaaaagat aagaggccag aacagcaagc atgagagcat aaaacgagca
     4981 gccaaagaca gcgcctcaaa ataccgtgta cacaagggtg tacctactga gaaaacgcat
     5041 tacaagaaac acagcaacca cgggcgttta aagccactac tcaataaaca gattcaacgt
     5101 aacgccaatt cttacttttc agccttcaca aatgccgccc actcaaacag agcggcattt
     5161 ttcttccccg caacttcaat tctgttttgc gtgcctgctc cagattttgc gatgtttttt
     5221 tgcccagcac actgagaacg tgagatactc acaactgtat ataaatacag ttacagattt
     5281 actttctttg caatcgatat cacatggagt gggcaatgaa cgaacatcat caaccttttg
     5341 aagaaatacg gcattatggc actgaagggc aagaattttg gtcagctaga gaattggcac
     5401 cgttactgga ttatcgggac tggcgcaatt ttcaaaaggt actggcccgc gcgactcaag
     5461 cgtgcgaagc cagcaatcaa gctgcatctg accatttcgt tgaaaccacc aaaatggttg
     5521 tattaggttc aggggctcaa cgagaacttg aagatgttca tctctcccgc tatgcctgtt
     5581 acctggtagt acaaaacggc gaccctgcga aaccggttat tgcggcaggg caaacttatt
     5641 ttgctatcca gacccgacgg caggagctgg ctgacgatga agctttcagg caacttcgtg
     5701 aagacgaaaa gcgtcttttt ctgagaaatg aattgaaaga acataacaaa caattggttg
     5761 aggcagcgca gcaagctggg gtagcgacag ctatcgattt cgccatattt cagaatcatg
     5821 gttaccgggg gctgtatggt ggattagatc agaaagctat tcatcagcgg aaggggctga
     5881 aaaagaatca gaatatcctg gatcatatgg gttcaacaga actggcggct aatctctttc
     5941 gagctaccca aacagaagaa aaactcaagc gggatggcgt gaattcaaaa cagcaagcaa
     6001 acaccacaca ctttgacgtg ggtcgcaagg tgaggcaaac cattcaggaa cttggcggaa
     6061 ccatgcctga ggagttgccg accccgcagg tcagcatcaa gcagttggaa aacagtgtaa
     6121 aaattacaga gaagaaatag cagaaactaa aaactctttt tcttaattga gatacccgat
     6181 gcgtaagcca aagtccaggt gcagtgaaca caatggctaa acattgcacc tttcttttcc
     6241 acccctcaat tttaacctat tttttcttat gcattttctc agacaagaac tcagaataat
     6301 gcatctacgc tacagaaaat agcgatttca cataactaca agttatcaat ttcctcttac
     6361 cttaaaaaat ctcaatcgtg acaatgcgca caaatcgcta ccctgccaga cagattttta
     6421 gggagagaac catgctgtta cacattttgt atttggttgg catcactgcc gaagccatga
     6481 cgggggcgct ggcggccgga cgacggcgca tggatacatt tggcgtaatt attattgcga
     6541 ccgccaccgc aattggcgga gggtcagtgc gcgatattct gctgggccac tatccgctcg
     6601 gctgggtcaa acacccggaa tatgtgatta tcgtcgctac cgccgcagta ctcaccacta
     6661 tcgttgctcc tgtaatgcct tacctgcgca aagtgtttct ggtgctcgat gcgctcggac
     6721 tggtggtctt ttctatcatc ggcgcacagg ttgcactgga tatggggcac ggcccaatta
     6781 ttgccgttgt cgcggcggta accaccggcg tgtttggcgg cgttttgcgc gatatgttct
     6841 gtaaacgcat cccactggta ttccagaaag agttgtatgc tggtgtctca tttgcctccg
     6901 ccgtgctgta catcgcgctg caacactatg tttctaacca tgatgtggtg attatctcca
     6961 ccctggtatt cggctttttt gcccgcttac tggcgctacg tcttaagctg ggattaccgg
     7021 tcttttacta cagccacgaa ggtcactaag gttcaaaacc tgtgatctgc tgggcagcca
     7081 gccaactgcc cagcttcttg atttgcgcat tttccttcca ttcaataacc tgtctggcgc
     7141 gcccagatcc agtccccggc agctgctgtc agaactgctc cgtgctaaat aaaagttgcg
     7201 actaggaccg ttcatcactg gcattaagcg ccgcccgggt tagcggtatt cccattgcca
     7261 tcacccagcg agtaaaaggc tgcttacgag ccagattaaa ctgatgccat aactgcgcac
     7321 ttttactttt cgcgatcccc ggcgtgttct gtaattgctc tggcgttaat aaaagccaag
     7381 aaaagatatg ctcaaagcga tgagtctgat gcagcgcgcg ccaaccggcc tcaccaatgc
     7441 catccagccc aagaacctgt tttgacccca
//
LOCUS       DADMJB010000184         7435 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.187, whole genome shotgun sequence.
ACCESSION   DADMJB010000184 DADMJB010000000
VERSION     DADMJB010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7435
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.187"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            167..274
                     /locus_tag="JN078_003632"
     CDS             167..274
                     /locus_tag="JN078_003632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588455.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042690.1"
                     /translation="MPTKRFDKKHWKMVVVLLAICGAMLLLRWAAIIWG"
     gene            complement(327..1085)
                     /locus_tag="JN078_003633"
     CDS             complement(327..1085)
                     /locus_tag="JN078_003633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiY family protein"
                     /protein_id="HAY9042691.1"
                     /translation="MKLLKTVPAIVMLAGGMFASLNAAADDSVFTVMDDPASAKKPFE
                     GNLNAGYLAQSGNTKSSSLTADTTMTWYGQTTAWSLWGNASNTSSNDERSSEKYAAGG
                     RSRFNLTDYDYLFGQASWLTDRYNGYRERDVLTAGYGRQFLNGPVHSFRFEFGPGVRY
                     DKYTDNASETQPLGYASGAYAWQLTDNAKFTQGVSVFGAEDTTLNSESALNVAINEHF
                     GLKVTYNVTWNSEPPESAPEHTDRRTTLSLGYSM"
     gene            1372..2301
                     /gene="pfkB"
                     /locus_tag="JN078_003634"
     CDS             1372..2301
                     /gene="pfkB"
                     /locus_tag="JN078_003634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416237.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase II"
                     /protein_id="HAY9042692.1"
                     /translation="MVRIYTLTLAPSLDSATITPQIYPEGKLRCTAPVFEPGGGGINV
                     ARAIAHLGGSATAIFPAGGATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGE
                     QYRFVMPGAALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISASQKQG
                     IRCIVDSSGEALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKA
                     KRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMV
                     RFGVAAGSAATLNQGTRLCSHDDTQKIYAYLSR"
     gene            2402..2692
                     /gene="ghoS"
                     /locus_tag="JN078_003635"
     CDS             2402..2692
                     /gene="ghoS"
                     /locus_tag="JN078_003635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type V toxin-antitoxin system endoribonuclease
                     antitoxin GhoS"
                     /protein_id="HAY9042693.1"
                     /translation="MASGDLVRYVITVMLHEDTLTEINELNNYLTRDGFLLTMTDDEG
                     NIHELGTNTFGLISTQSEEEIRELVSGLTQSATGKDPEITITTWEEWNSNRK"
     gene            2798..3658
                     /locus_tag="JN078_003636"
     CDS             2798..3658
                     /locus_tag="JN078_003636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructosamine kinase family protein"
                     /protein_id="HAY9042694.1"
                     /translation="MWQAISRLLSEQLGEGEIELRNELPGGEVHAAWHLRYAGHDFFV
                     KCDERELLPGFTAEADQLELLSRSKTVTVPKVWAVGADRDYSFLVMDYLPPRPLDAHS
                     AFILGQQIARLHQWSDQPQFGLDFDNSLSTTPQPNTWQRRWSTFFAEQRIGWQLELAA
                     EKGIAFGNIDAIVEHIQQRLASHQPQPSLLHGDLWSGNCALGPDGPYIFDPACYWGDR
                     ECDLAMLPLHTEQPPQIYDGYQSVSPLPADFLERQPVYQLYTLLNRARLFGGQHLVIA
                     QQSLDRLLAA"
     gene            complement(3699..4235)
                     /locus_tag="JN078_003637"
     CDS             complement(3699..4235)
                     /locus_tag="JN078_003637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042695.1"
                     /translation="MTYQQAGHIAVLKRILGWVIFIPALISTLISLLKFMNTRQENQE
                     GINAVMLDFTHVMIDMMQANTPFLNLFWYNSPTPNFNGGVNVMFWVIFILIFVGLALQ
                     DSGARMSRQARFLREGVEDQLILEKAKGEEGLTREQIESRIVVPHHTIFLQFFSLYIL
                     PVICIAAGYVFFSLLGFI"
     gene            4382..5050
                     /gene="hxpB"
                     /locus_tag="JN078_003638"
     CDS             4382..5050
                     /gene="hxpB"
                     /locus_tag="JN078_003638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpB"
                     /protein_id="HAY9042696.1"
                     /translation="MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRN
                     ELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVIARAISLVEETRPLLPGVREAVA
                     LCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAK
                     LGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLANVKLSSLTELTAK
                     DLLG"
     gene            5213..5803
                     /locus_tag="JN078_003639"
     CDS             5213..5803
                     /locus_tag="JN078_003639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707386.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HAY9042697.1"
                     /translation="MTAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLL
                     PDIDHPKSFLGQRLKWISKPIARAFGHRGFTHSLLAVFALLATFYLKVPEGWFIPADA
                     LQGMVLGYLSHILADMLTPAGVPLLWPCRWRFRLPILVPQKGNQLERFICMALFVWSV
                     WMPHSLPENSAVRWSSQIINTLQIQFHRLIKHQVEY"
     gene            5936..7327
                     /locus_tag="JN078_003640"
     CDS             5936..7327
                     /locus_tag="JN078_003640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine transporter"
                     /protein_id="HAY9042698.1"
                     /translation="MNFPLIANIVVFVVLLFALAQTRHKQWSLAKKVLVGLVMGVVFG
                     LALHTIYGSDSQVLKDSVQWFNIVGNGYVQLLQMIVMPLVFASILSAVARLHNASQLG
                     KISFLTIGTLLFTTLIAALVGVLVTNLFGLTAEGLVQGGAETARLNAIESNYVGKVSD
                     LSVPQLVLSFIPKNPFADLTGANPTSIISVVIFAAFLGVAALKLLKDDAPKGERVLAA
                     IDTLQSWVMKLVRLVMQLTPYGVLALMTKVVAGSNLQDIIKLGSFVVASYLGLLIMFA
                     VHGILLGINGVSPLKYFRKVWPVLTFAFTSRSSAASIPLNVEAQTRRLGVPESIASFA
                     ASFGATIGQNGCAGLYPAMLAVMVAPTVGINPLDPMWIATLVGIVTVSSAGVAGVGGG
                     ATFAALIVLPAMGLPVTLVALLISVEPLIDMGRTALNVSGSMTAGTLTSQWLKQTDKA
                     ILDSEDDAELAHR"
BASE COUNT         1867 a         1809 c         1836 g         1923 t
ORIGIN      
        1 attttcgata tatatgttga tgcataatat tattttttca taaaacgcag aaacagtgac
       61 caggtgtaca acgccaccca acggctgtaa taacaaaaaa tcccttgatg cccgtccctt
      121 ttgttacact ccgttatcac gcacaagaga tatgcaggac actggtatgc cgactaaacg
      181 ctttgataaa aaacactgga agatggtggt ggtgctactg gcaatctgtg gcgctatgtt
      241 gttgctacgt tgggcagcaa ttatttgggg ctgagcagtg acaaacgaag acagccagac
      301 cgcataacac ggtccggcag ataattttac atgctgtagc ccagcgataa ggttgtccga
      361 cggtcggtat gttccggtgc agactctgga ggttcagagt tccatgtaac gttgtaagtc
      421 accttcagtc caaaatgttc attaatagca acatttaatg cgctttcgga gttcagcgtt
      481 gtgtcttccg cgccaaagac cgaaacaccc tgcgtaaatt tagcgttgtc agtcaactgc
      541 catgcataag ccccggaggc atagcccagc ggctgagttt cactggcatt gtcggtatat
      601 ttgtcgtaac gcacacctgg accgaattca aagcggaaac tgtgtaccgg gccattcaaa
      661 aactgacgac cataacccgc ggtcaacaca tcgcgctctc gatagccgtt ataacggtct
      721 gtcagccagc ttgcctgacc aaataaatag tcataatcag ttaaattaaa gcggctacgc
      781 ccgcccgccg catatttttc tgaagaacgc tcatcattag aagaagtatt actggcgttc
      841 ccccacagcg accaggcagt ggtttgtcca taccaggtca tggtggtgtc agccgtaagt
      901 gaggagcttt tcgtattgcc tgattgtgca agatatcctg cgttcagatt accttcgaaa
      961 ggttttttag cgctggcagg atcgtccatg acagtaaaaa cggaatcatc ggcagctgca
     1021 ttcagtgacg caaacatgcc ccccgccaac ataacgatgg caggaactgt cttcaaaagc
     1081 ttcatttatc aagagtccgt acaacaaaaa aagagaccat cgcggtcccg gaaactttct
     1141 taaggatcaa agattagcgt ccctggaaag gtaacgaatt ataaaaaggc gcgaataact
     1201 tagcaatgta ttcttatttc attttttgaa taagcatgtg gcgaaaacag atttttattt
     1261 atatatattt atctgcaaaa ttttaaataa agctccaata aatcatattg ttaatttctt
     1321 cactttccgc tgattcggtg ccagactgaa atcagcctat aggaggaaat gatggtacgt
     1381 atctatacgt tgacacttgc gccctctctc gatagcgcaa caattacccc gcaaatttat
     1441 cccgaaggaa aactgcgctg taccgcaccg gtgttcgaac ccgggggcgg cggcatcaac
     1501 gtcgcccgcg ccattgccca tcttggaggc agtgccacag cgatcttccc ggcgggtggc
     1561 gcgaccggcg aacacctggt ttcactgttg gcggatgaaa atgtccccgt cgctactgta
     1621 gaagccaaag actggacccg gcagaattta catgtacatg tggaagcaag cggtgagcag
     1681 tatcgttttg ttatgccagg cgcggcatta aatgaagatg agtttcgcca gcttgaagag
     1741 caagttctgg aaattgaatc cggggccatc ctagtcataa gcggaagcct gccgccaggt
     1801 gtgaagctgg aaaaattaac ccaactgatt tccgcttcgc aaaaacaagg gatccgctgc
     1861 atcgtcgaca gttctggcga agcgttaagt gcagcactgg caattggtaa catcgagttg
     1921 gttaagccta accaaaaaga actcagtgcg ctggtgaatc gcgaactcac ccagccggac
     1981 gatgtccgca aagccgcgca ggaaatcgtt aatagcggca aggccaaacg ggttgtcgtt
     2041 tcccttggtc cacaaggagc gctgggtgtt gatagtgaaa actgcattca ggtggtgcca
     2101 ccaccggtga aaagccagag taccgttggc gctggtgaca gcatggtcgg cgcgatgaca
     2161 ctgaaactgg cagaaaatgc ctctcttgaa gagatggtcc gttttggcgt agctgcgggg
     2221 agtgcagcca cactcaatca gggaacacgt ctgtgctccc atgacgatac gcaaaaaatt
     2281 tacgcttacc tttcccgcta acaaaaacat tcccccagca ttgggggaat caccaccaac
     2341 ctgtcggcaa cgcgtttctc cgactatgct caaaagtcat gtgataacaa aggggtgaac
     2401 tatggccagt ggcgatcttg tccgttatgt cataaccgtc atgttgcatg aggatacatt
     2461 gactgaaatt aacgagttga ataattacct gactcgcgac ggttttttgc tcaccatgac
     2521 ggatgatgag ggaaatatcc atgagctggg gactaacact tttggactta tcagtaccca
     2581 aagtgaagaa gaaattagag aactggtttc ggggcttacc caaagtgcaa ccggcaaaga
     2641 tcctgaaatc accatcacga cctgggagga atggaatagc aacagaaaat aaatggtttt
     2701 tgggcaataa tcagtctgtg gtgtgcgtta gctcgtgttt ttacaccgca ttcttgcgct
     2761 aaccttatga tctggcagac aacatgggag agacatcatg tggcaggcaa tcagtcgtct
     2821 tttgagcgag cagttaggtg aaggcgaaat cgaactgcgt aatgaactgc ctggcggaga
     2881 agtccatgcc gcatggcatt tgcgctatgc aggacatgac tttttcgtca aatgtgatga
     2941 aagggaactg cttcccggtt ttaccgccga agccgaccaa ctggagttac tgtcgcgtag
     3001 taaaaccgtc accgtgccta aggtttgggc agtaggcgct gaccgtgact acagttttct
     3061 ggtgatggat tatctcccac ctcgtccgct ggatgcgcat agcgcattta ttcttggtca
     3121 gcaaattgcg cgtttacatc aatggagtga ccaaccacaa tttggcctcg attttgataa
     3181 ctcgctctcc acaactccac agcccaacac ctggcaacgt cgctggtcaa cgttttttgc
     3241 tgaacaacgg attggctggc agttggaact ggcagcagag aaagggatcg ctttcggcaa
     3301 tatcgacgcc atcgtcgagc atattcagca gcgtctggcc tcgcatcaac cgcagccttc
     3361 tctgttgcac ggcgatttat ggtccggcaa ctgtgcgctg ggtccggatg gcccgtacat
     3421 tttcgaccct gcctgctact ggggtgaccg agagtgcgac ctggcgatgt taccgctgca
     3481 tactgaacag ccgccacaaa tctatgacgg ctatcagtca gtatccccgc tacctgccga
     3541 tttccttgaa cgtcaaccgg tttaccaact ctacacgctg ttaaatcgtg caaggttatt
     3601 tggcggtcag catttggtta ttgctcagca gtcactggat agattattag cagcatgata
     3661 tgggttgaag ataatggccg ctctgtgcgg ccttttgatt aaataaaccc aagcagagaa
     3721 aagaacacat aacctgcagc aatacaaata accggcagga tatacagtga gaaaaactgc
     3781 aggaaaatag tatggtgcgg aacaacaata cgggactcaa tttgttcacg cgttagcccc
     3841 tcttcccctt tggctttttc cagaatgagt tgatcttcaa caccttcccg caagaagcgc
     3901 gcctggcgac tcattcgggc accggaatcc tgcaacgcca gtccgacaaa aatcaggatg
     3961 aaaatcaccc agaacataac gttcacgcca ccattaaaat tgggcgtcgg ggagttatac
     4021 cagaacagat tcaaaaaagg cgtattcgcc tgcatcatat cgatcatgac atgagtaaag
     4081 tcgagcatga ccgcattaat gccttcctgg ttttcctgcc gggtattcat aaatttcagc
     4141 aaagaaatca atgtagagat caatgcaggt ataaaaatca cccaacccaa aatccttttc
     4201 aaaacagcaa tgtgtccagc ttgttgatac gtcatgagtt ctccttgatt aagacgcgtc
     4261 gtttcactta gtttacctgt agatatctgt tttcgcccat tctttaaagg cgatatgata
     4321 ggcgcttaat cataagcacg gcttaatacc ttacacataa tgctctaaag gagaggttgt
     4381 aatgtcaacc ccgcgtcaga ttcttgctgc aatttttgat atggatggat tacttatcga
     4441 ctcagaacct ttatgggatc gagccgaact ggatgtgatg gcaagcctgg gggtggatat
     4501 ctcccgtcgt aacgagctgc cggacacctt aggtttacgc atcgatatgg tggtcgatct
     4561 ttggtacgcc cggcaaccgt ggaatgggcc aagccgtcag gaagtagtag aacgggttat
     4621 tgcccgtgcc atttcactgg ttgaagagac acgtccatta ttaccaggcg tgcgcgaagc
     4681 tgttgcgtta tgcaaagaac aaggtttatt ggtgggactg gcctccgcgt caccactaca
     4741 tatgctggaa aaagtgttga ccatgtttga cttacgcgac agtttcgatg ccctcgcctc
     4801 ggctgaaaaa ctgccttaca gcaagccgca tccgcaagta tatctcgact gcgcagcaaa
     4861 actgggcgtt gacccactga cctgcgtggc gctggaagac tcggtaaatg gcatgatcgc
     4921 ttctaaagca gcccgcatgc gttccatcgt cgttcctgcg ccagaagcgc aaaatgatcc
     4981 acgttttgta ttagcaaacg tcaaactctc atcgctgaca gaactcaccg caaaagacct
     5041 tctcggttaa tgaccagggg cagtgatcac gctgcccctg gttctttatc tgaatttgca
     5101 ttcaactgac ggattaatcg tcaatttaag agaaagagtt acaccgtcac cacttccgtg
     5161 aactgtataa aaatcctata ctgtacgtat cgacagttta gtgagtttta tcatgacggc
     5221 ggaaggtcac cttctctttt ctattgcttg tgcggtattt gccaaaaatg ccgagctgac
     5281 gcccgtgctg gcacagggtg actggtggca tattgtccct tccgcaatcc tgacgtgttt
     5341 gttaccggac atcgatcacc caaagtcgtt tcttgggcag cgattaaaat ggatatcaaa
     5401 accgatcgcc cgcgcttttg ggcatcgtgg ttttacccac agtctgctgg cggtatttgc
     5461 gctgctggca accttttacc ttaaggttcc ggaaggctgg ttcattccgg ctgatgcgct
     5521 acaaggaatg gtgctgggtt atttgagcca catacttgcc gatatgctga cacccgccgg
     5581 tgttcccctg ctctggccat gccgctggcg tttccgcttg cctatcctag ttccccaaaa
     5641 gggcaaccaa ctggaacgtt ttatctgtat ggcattattt gtctggtcgg tatggatgcc
     5701 ccattcatta cccgagaaca gcgctgttcg ttggtcatcg caaataatca ataccttgca
     5761 gatccagttt catcggctta ttaagcatca ggttgaatac taaaaagaca aaaatcacct
     5821 ttctggaata agcaattcca tttgaatata agagccagct cacagttctg ttaatcttgc
     5881 gccaacacta tgactgctac gcagtgatag aaataataag atcaggagaa cggggatgaa
     5941 ctttccatta attgcgaaca tcgtggtgtt cgttgtactg ctgtttgcgc tggctcagac
     6001 ccgccataaa cagtggagtc tggcgaaaaa agtgctggtg ggtctggtga tgggtgtggt
     6061 ttttggcctt gccctgcata ccatttatgg ttctgacagc caggtactta aagattctgt
     6121 acagtggttt aacatcgttg gtaacggcta tgttcaactg ctgcaaatga tcgttatgcc
     6181 gttagtcttc gcctctattc tgagcgcggt tgcccgtctg cataacgcat ctcagttagg
     6241 caaaatcagt tttctgacca tcggtacgct tttgtttacc acgctgattg cggcgctggt
     6301 cggtgtgctg gtcaccaacc tgtttggttt gacggctgaa ggtctggttc agggtggtgc
     6361 agaaactgca cgtctgaacg ccattgaaag taactatgtt ggtaaagtct ctgatctgag
     6421 cgttccgcag ctggtcttgt cctttatccc gaaaaacccg tttgccgatc ttaccggagc
     6481 caatccgacg tcaattatca gcgtggtaat ttttgccgca ttcctcggcg tagctgcatt
     6541 gaaactgctg aaggatgatg cgccgaaagg tgaacgcgtc ttagccgcta tcgataccct
     6601 acaaagctgg gtgatgaaac tggttcgcct tgtcatgcag ttgacccctt acggcgttct
     6661 ggctctaatg accaaagtgg ttgcaggttc taacttgcaa gacatcatca aactgggaag
     6721 tttcgttgtc gcgtcctacc tcggtctgct gattatgttt gcagtgcatg gcattctgct
     6781 gggcattaat ggcgtgagtc cgctgaagta cttccgtaag gtatggcctg tgctgacgtt
     6841 tgcctttacc agccgttcca gtgctgcgtc tatcccactg aatgtggaag cacaaacgcg
     6901 tcgtctgggc gttcctgaat ccatcgccag tttcgccgcc tctttcggtg caaccattgg
     6961 tcagaacggc tgcgccggtt tgtatccggc aatgctggcg gtgatggttg cgcctacggt
     7021 tggcattaac ccgctggacc cgatgtggat tgcgacgctg gtcggtattg ttaccgttag
     7081 ttccgcaggc gttgccggtg tcggtggtgg tgcaactttc gccgcactga ttgtgctgcc
     7141 tgcgatgggc ctgccagtaa ccctggtggc gctgttaatc tccgttgaac cgcttatcga
     7201 catgggccgt acggcgctaa acgttagtgg ctcgatgaca gctggcacgc tgaccagcca
     7261 gtggctgaag caaaccgata aagccattct ggatagcgaa gacgacgccg aactggcaca
     7321 ccgttaattc ttatgctggc aatggtccgt tttgtatagg ggccgttgct ttacttttta
     7381 aatgttccat cgcggcgatg catactgact catatttaaa cagatcgtca gcgaa
//
LOCUS       DADMJB010000185         7409 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.188, whole genome shotgun sequence.
ACCESSION   DADMJB010000185 DADMJB010000000
VERSION     DADMJB010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7409
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.188"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            1..1459
                     /locus_tag="JN078_003641"
                     /pseudo
     CDS             1..1459
                     /locus_tag="JN078_003641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709462.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
     gene            1470..2543
                     /locus_tag="JN078_003642"
     CDS             1470..2543
                     /locus_tag="JN078_003642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001685709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY9042699.1"
                     /translation="MNKYIKQWCFAVFMLSLSSVALAAPKGICTPDNGVFHSTLDFSG
                     YLITANENKVGTTFNTTVTNGSSYPGRCHCDTGNVGEFPYIYYTSKINQALTYAGVHS
                     NINYYDLNPNLDVGIAIDILGVGYVNAPFEYHANNPSGNTKYNCNRIEPLSISSGAKA
                     IVYFYIKKTFAGKLIIPETKIVTLYGTISRDTPVDYSQPMANVYIRGDITAPQSCEIN
                     NLQPVYFDFKEIPAADFSSVVGSAVITHKITKTVTIECENLGILNTDDISTSFYATEP
                     NTDNSMVVTSNSNVGIKIYDKNNKEIKVNGGELPTDMGKSTVYGEKLGSVTFSAAPAS
                     LTGARPAPGQFTATATITVEIVR"
     gene            2791..3831
                     /gene="pstS"
                     /locus_tag="JN078_003643"
     CDS             2791..3831
                     /gene="pstS"
                     /locus_tag="JN078_003643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HAY9042700.1"
                     /translation="MKVMRTTVATVVAATLSMSAFSVFAEASLTGAGATFPAPVYAKW
                     ADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIG
                     GVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAIAKLNPGLKLPSQNIAVVRR
                     ADGSGTSFVFTSYLAKVNEEWKNNVGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGY
                     VEYAYAKQNNLAYTKLISADGKPVSPTEENFANAAKGADWSKTFAQDLTNQKGEDAWP
                     ITSTTFILIHKDQKKPEQGTEVLKFFDWAYKTGAKQANDLDYASLPDSVVEQVRAAWK
                     TNIKDSSGKPLY"
     gene            3918..4877
                     /gene="pstC"
                     /locus_tag="JN078_003644"
     CDS             3918..4877
                     /gene="pstC"
                     /locus_tag="JN078_003644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008806729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstC"
                     /protein_id="HAY9042701.1"
                     /translation="MAATKPAFNPPGKKGDIIFSVLVKLAALIVLLMLGGIIVSLIIS
                     SWPSIQKFGLAFLWTKEWDAPNDIYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTE
                     LAPGWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFAVYFQEPVGNIMSNIPIVGAL
                     FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRI
                     VLPFTKNGVIGGIMLGLGRALGETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFA
                     EAESGLHVAALMELGLILFVITFIVLAASKFMIMRLAKNEGAR"
     gene            4877..5767
                     /gene="pstA"
                     /locus_tag="JN078_003645"
     CDS             4877..5767
                     /gene="pstA"
                     /locus_tag="JN078_003645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HAY9042702.1"
                     /translation="MAMVEIQTTAALAESRRKMQARRRLKNRIALTLSMATMAFGLFW
                     LIWILMSTITRGIDGMSLALFTEMTPPPNTEGGGLANALAGSGLLILWATVFGTPLGI
                     MAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVGLFVYTIVVAQMEHFSGWAGVIAL
                     ALLQVPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGILLAI
                     ARIAGETAPLLFTALSNQFWSTDMMQPIANLPVTIFKFAMSPFAEWQQLAWAGVLIIT
                     LCVLLLNILARVVFAKNKHG"
     gene            5858..6631
                     /gene="pstB"
                     /locus_tag="JN078_003646"
     CDS             5858..6631
                     /gene="pstB"
                     /locus_tag="JN078_003646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000063125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HAY9042703.1"
                     /translation="MSMVETAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGP
                     SGCGKSTLLRTFNKMFELYPEQRAEGEILLDGDNILTNSQDIALLRAKVGMVFQKPTP
                     FPMSIYDNIAFGVRLFEKLSRADMDERVQWALTKAALWNETKDKLHQSGYSLSGGQQQ
                     RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARC
                     SDHTAFMYLGELIEFSNTDDLFTKPAKKQTEDYITGRYG"
     gene            6646..7371
                     /gene="phoU"
                     /locus_tag="JN078_003647"
     CDS             6646..7371
                     /gene="phoU"
                     /locus_tag="JN078_003647"
                     /EC_number="3.5.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HAY9042704.1"
                     /translation="MDSLNLNKHISGQFNAELESIRTQVMTMGGMVEQQLSDAITAMH
                     NQDSDLAKRVIEGDKNVNMMEVAIDEACVRIIAKRQPTASDLRLVMVISKTIAELERI
                     GDVADKICRTALEKFSQQHQPLLVSLESLGRHTIQMLHDVLDAFARMDIDEAVRIYRE
                     DKKVDQEYEGIVRQLMTYMMEDSRTIPSVLTALFCARSIERIGDRCQNICEFIFYYVK
                     GQDFRHVGGDELDKLLAGKDSDK"
BASE COUNT         1863 a         1718 c         1933 g         1895 t
ORIGIN      
        1 cagatgttga tgtcagcgtg ggtgaattgc gcgatgaaga cggatttaca ccggacgtcc
       61 ttcaggcgca aatacttcat ggtttttccc acgggatcac tttatatgga ggtatgcagg
      121 ctgctgaaaa ttatggttct gcagctctgg gtgtcggtaa agatcttggc gctttgggcg
      181 caatttcttt cgatgtgaca catgctcgtg cgaattttag ccatgatgat acagaaacgg
      241 gtcagtcata tcgctttctc tattcaaaac gatttgacga cacagacact agcttgcgcc
      301 tggttggcta tcgttactcc accgagggct actataccct caatgagtgg gcatcgcggc
      361 gcaacagccc tgaagacttt tgggaaacag gtaaccgacg tagtcgcgtg gagggaacgc
      421 taacgcagtc gttggggaga gattatggca atttatacct gacattaagc cggcaacaat
      481 actggcatac cgatgatgtc gaacgattaa tgcaatttgg ctacagcagt agctggaagc
      541 gtctctcgtg gaacgtctcc tggagttatt ccaatactgc cagacagggg acggggaaca
      601 accatgccag tgataacacc agtgagcaga tctacatgct ctctttatct gttcctttat
      661 cgggctggtg gggtaatagt tacgccacct attctgtttc gcaaaacgat aattccggta
      721 gctcacatca agcggtacgg cgctggaaag aaataacctt tcatggaatt taatgcagtc
      781 ctataacagt catgatgatg aggttggcgg taatatgtcc ctgacctatg atggctctta
      841 tggcacggtg aacggcagct ataactacag ccaaaattcc cagaggctga attatggtat
      901 cagaggggga attctggcac acagcgaagg ggtaacgtta agtcaggagt taggtgaaac
      961 tattgctctt gttaaagcac ctggggccgc cgggttagaa atagataata tgcgcggtgc
     1021 tgcgacggac tggcgcggct atacggtcaa gacacagcta aacccttatg atgaaaatcg
     1081 ggtagcaatc agcgataact atttctcgaa gtcgaatata gaacttgata ataccgtcgt
     1141 tacgatggtt cccacgcgtg gtgcagtggt taaagcggag tttgtgactc atgtgggtta
     1201 tcgcgttctc ttcagagtgt taaatgcaaa tggtaaaccg gtaccttttg gagccattgc
     1261 tgcgatacaa gatgcaagtt tggcagattc aggaattgtc ggtgaccgtg gcgaacttta
     1321 tctttctggt ctaccagaaa aaggacaggt tacgttatcc tggggagaaa acgcctcaac
     1381 aaaatgcatc ttcaattatt cactttcgac accagaaagt gagagcggat taattgaaca
     1441 gggtgtgaca tgtcattaaa aggattttta tgaacaagta tatcaaacag tggtgctttg
     1501 ctgtgtttat gctctcgtta agtagtgtag cacttgcagc tcctaaaggt atctgtaccc
     1561 ctgataatgg cgtatttcac agtacgcttg atttctcggg atatcttatt accgcgaacg
     1621 aaaataaggt tggaacgaca tttaacacca ctgtaactaa tggatcctca tatcctggac
     1681 gctgtcattg tgatactggt aacgtaggag aattccccta tatctattat acgtcaaaaa
     1741 taaaccaggc attaacttat gctggggttc actctaatat taattattat gatcttaatc
     1801 cgaaccttga tgttgggatt gctatagata ttcttggggt tgggtatgtg aatgcacctt
     1861 ttgaatatca tgctaacaac ccgtctggta atacaaagta caattgcaac cgcattgaac
     1921 ctttaagtat atctagtggg gctaaagcga tagtatattt ttatatcaag aagacatttg
     1981 caggaaaatt gattattcct gaaacaaaga tagtgacatt gtatggaaca attagccgtg
     2041 acaccccggt ggattactca cagccgatgg ctaatgttta tattcggggc gatattacag
     2101 ctccgcaaag ttgcgaaata aataatttac agccagttta ttttgatttt aaagaaatac
     2161 cagctgcaga tttttcatct gttgttggaa gtgcggtaat aacacataaa attactaaaa
     2221 cggtcactat tgagtgtgaa aacctgggga tactgaatac cgatgatatc agtacgtctt
     2281 tttatgctac cgaacccaat acggacaatt caatggtcgt aacttcaaac tctaacgtgg
     2341 ggataaaaat ttacgacaaa aataataagg aaatcaaagt gaacggtggt gagttgccaa
     2401 cagacatggg taaatcaaca gtgtatggtg aaaaattagg tagtgtaact ttttcagctg
     2461 ctcctgcgag ccttactgga gctcgcccag ccccggggca atttactgca acagcgacga
     2521 taactgttga gattgtgcgc taataggtct gacaacgatt gttcatcaca tcgttgtcat
     2581 ctcacccatt tctttatcac ttttaaatgc atcatgacaa aaagatgaca tgtgggattt
     2641 tcatcttcac atttaaaatc agtaagttat ttggtaattc ctttctgtca taaaaatgtc
     2701 atattcctta catataactg tcacctgttt gtcctatttt gcttctcgta gccaacaaac
     2761 aatgctttat gaatcctccc aggagacatt atgaaagtta tgcgtaccac cgtcgcaact
     2821 gttgtcgccg cgaccttatc gatgagcgct ttctctgtgt ttgcagaagc aagcctgaca
     2881 ggtgcaggtg caaccttccc tgcgccggtg tatgccaaat gggctgacac ttaccagaaa
     2941 gaaaccggta ataaagttaa ctaccagggt atcggttctt ccggtggcgt aaaacagatt
     3001 atcgctaata ccgttgattt tggtgcctct gacgcgccgc tgtctgacga aaaactggct
     3061 caggaaggtc tgttccagtt cccgaccgtg attggcggcg tggtgctggc ggttaacatt
     3121 ccagggctga agtctggcga actggtgctg gatggtaaaa ccctcggcga catctacctg
     3181 ggcaaaatca agaagtggga tgatgaagcc atcgccaaac tgaatccggg tctgaaactg
     3241 ccttcacaaa acattgctgt agtacgccgc gcagatggct ccgggacttc cttcgtcttc
     3301 accagctacc tggcgaaagt gaacgaagag tggaaaaaca acgttggtac tggctctacc
     3361 gtaaaatggc cgatcggtct gggcggtaaa ggtaacgacg gtatcgccgc gttcgttcag
     3421 cgtctgccgg gtgcaattgg ttatgttgaa tatgcttacg cgaagcagaa caacctggcg
     3481 tacaccaaac tgatctccgc tgatggtaaa ccggttagtc cgaccgaaga aaacttcgct
     3541 aatgcagcaa aaggtgcaga ctggagcaaa accttcgctc aggatctgac caaccagaaa
     3601 ggcgaagatg catggcctat tacctctacc acgttcattc tgatccacaa agatcagaag
     3661 aaaccagaac aaggcacaga agtgctaaaa ttcttcgact gggcgtacaa aaccggggct
     3721 aaacaggcga acgacctgga ttacgccagc ctgccggata gtgtagttga acaggttcgc
     3781 gctgcgtgga agaccaatat taaagacagt agcggtaagc cgctgtacta ataaaactcc
     3841 aggccgggta cggtgtttta cgccgcatcc ggcattacaa aatgactttg taaacgcgtt
     3901 taactgaaga gtaacttatg gctgcaacca agcctgcttt taacccaccg ggtaaaaagg
     3961 gcgacataat tttcagcgtg ctggtaaaac tggcggcgct gattgtgcta ttgatgttgg
     4021 gtggcattat tgtctctctg atcatctcct cctggccgag cattcagaaa tttggtctgg
     4081 ctttcctatg gaccaaagag tgggatgcac cgaacgatat ctacggggcg ctggtgccga
     4141 tctacggtac gttggtgact tcgtttatcg cgctgctgat cgccgtcccg gtgagtttcg
     4201 gtatcgccct gttcctgact gagcttgcgc ctggctggct gaaacgcccg ctgggtatcg
     4261 ccattgagct gctggcagcc attccaagta tcgtttacgg catgtggggc ctgtttatct
     4321 ttgcgccgct gttcgccgtt tactttcagg agccggtcgg caatatcatg tcgaatatcc
     4381 cgattgttgg cgcgctgttc tctggccccg catttggtat cggtatcctc gcggcaggcg
     4441 tgatcctcgc catcatgatt attccgtaca ttgcggcggt aatgcgtgat gtgttcgaac
     4501 aaaccccggt gatgatgaaa gagtcggcct acggtattgg ctgcaccacc tgggaagtta
     4561 tctggcgtat cgttcttccg ttcaccaaaa atggtgttat cggcggcatc atgctggggc
     4621 tgggccgcgc gctcggtgaa accatggcgg tgacctttat catcggtaac acctaccagc
     4681 tcgacagcgc ctcgctgtac atgccgggca atagtatcac ctctgcgttg gcgaacgaat
     4741 ttgcggaagc ggaatccggt ctgcacgttg ccgcactgat ggaactgggc ctgatcctgt
     4801 ttgtgattac cttcatcgtc ctcgccgcat cgaagtttat gattatgcgc ctggctaaga
     4861 atgagggggc acgctaatgg ctatggttga aatccaaacc actgcggcgc tggctgaatc
     4921 tcgccgcaaa atgcaggcgc gtcgccgcct caaaaaccgt attgcgctga cgctctcgat
     4981 ggcgacgatg gccttcggcc tgttctggct gatctggatt ttaatgtcca ccatcactcg
     5041 cggtatcgac ggtatgtcgc tggcgctgtt cactgaaatg acgccgccgc ccaatacgga
     5101 aggtggtggt ctggcgaacg ccctggcggg tagcgggctg ttaattttgt gggccacggt
     5161 attcggtacg ccgctgggca ttatggcggg gatttatctg gcggaatatg gtcgtaaatc
     5221 ctggctggca gaagtgattc gcttcattaa cgacattctg ctctccgcgc cgtcgattgt
     5281 ggttggtctg tttgtttaca ccatcgtggt ggcgcagatg gagcacttct ctggctgggc
     5341 gggcgtgatt gccctggcgc tgttgcaggt gccgattgtt atccgcacca ccgagaacat
     5401 gctgaaactg gtgccggaca gcctgcgtga agcggcttat gcgctgggta caccgaagtg
     5461 gaagatgatc tctgcgatta cgctgaaagc gtcggtgtcc gggatcatga ccggtatcct
     5521 gctggcgatt gcccgtattg ctggtgaaac cgcgccgctg ctgtttaccg cgctctccaa
     5581 ccagttctgg agcacggaca tgatgcagcc gatcgccaac ctgccggtga cgatctttaa
     5641 gtttgcgatg agcccgtttg cggaatggca acaactggcc tgggccgggg tattgattat
     5701 taccctgtgc gtactgctgc tgaacattct agcgcgcgtt gtttttgcga agaataaaca
     5761 cggttaacac tttgccggat gcggcgtgaa cgccttatcc ggcctacggt aagcctgatt
     5821 agcgaagtgc atcaggcacg atgaggaaaa gattgcaatg agtatggttg aaactgcccc
     5881 gagtaaaatt caggttcgta atttgaactt ctactacggc aaattccatg ccctgaaaaa
     5941 catcaacctg gatatcgcta aaaaccaggt tacggcgttt atcgggccgt ccggctgcgg
     6001 taaatcgacg ctgctgcgta ccttcaacaa aatgtttgaa ctgtacccgg agcagcgtgc
     6061 ggaaggtgaa attctgcttg atggcgacaa catcctgacc aactctcagg atatcgcact
     6121 gctgcgtgcg aaagtgggca tggtgttcca gaaaccgacg ccgtttccga tgtccatcta
     6181 cgacaacatc gcttttggcg ttcgtctgtt tgagaagctc tcccgtgccg acatggacga
     6241 gcgcgtgcag tgggcattga ccaaagccgc attgtggaac gaaaccaaag ataaattgca
     6301 ccagagcggt tactctctct ctggtggtca gcaacagcgt ctgtgtattg cgcgtggtat
     6361 cgccattcgc ccggaagtgc tgctgctcga cgaaccgtgt tcggcgctcg accctatctc
     6421 taccgggcgt attgaagagc tgatcaccga actgaagcag gattacaccg tggtgatcgt
     6481 cacccacaac atgcagcagg ctgcgcgttg ttccgaccac acggcgttta tgtacctggg
     6541 cgaattgatt gagttcagca acacggacga tctgttcacc aagccagcga agaaacaaac
     6601 agaagactac atcaccggtc gttacggttg attcaggagt gcgttatgga cagtctcaat
     6661 cttaataaac atatttccgg ccagttcaac gccgaactgg aaagtatccg cacgcaggtg
     6721 atgaccatgg gcggcatggt ggagcagcag ctttctgatg caatcaccgc gatgcataac
     6781 caggacagcg atctggcgaa gcgcgtgatc gaaggcgaca agaacgtcaa catgatggaa
     6841 gtggcgatcg atgaagcctg cgtgcgcatt atcgccaaac gtcagccgac ggcgagcgac
     6901 ctgcgactgg ttatggtgat cagtaaaacc attgccgagc tggagcgtat tggcgacgtg
     6961 gcggacaaaa tctgccgtac tgcgctggag aaattctccc agcagcatca gccgttgctg
     7021 gtaagtctgg agtcgctggg ccgtcatacc atccagatgc tgcacgacgt gctggacgcg
     7081 ttcgcgcgga tggacattga cgaagcggta cgtatttatc gtgaagataa aaaagtcgat
     7141 caggaatacg aaggtattgt tcgtcaactg atgacctaca tgatggaaga ttcgcgtacc
     7201 attccgagcg tacttactgc gctgttctgc gcgcgttcta tcgaacgtat tggcgaccgc
     7261 tgccagaata tttgtgagtt tatcttctac tacgtgaagg ggcaggattt ccgtcatgta
     7321 ggcggtgatg agctggataa actgctggcg ggaaaagata gcgacaaata attcaccaga
     7381 caaatcccaa taacttaatt attgggatt
//
LOCUS       DADMJB010000186         7195 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.189, whole genome shotgun sequence.
ACCESSION   DADMJB010000186 DADMJB010000000
VERSION     DADMJB010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7195)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7195)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7195
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.189"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(826..1356)
                     /locus_tag="JN078_003648"
                     /pseudo
     CDS             complement(826..1356)
                     /locus_tag="JN078_003648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416483.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
     gene            complement(1699..2349)
                     /gene="zinT"
                     /locus_tag="JN078_003649"
     CDS             complement(1699..2349)
                     /gene="zinT"
                     /locus_tag="JN078_003649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-binding protein ZinT"
                     /protein_id="HAY9042705.1"
                     /translation="MAIRLHKLAVALGVFIVSAPAFSHGHHSHGKPLTEVEQKAANGV
                     FDDANVQNRTLSDWDGVWQSVYPLLQSGKLDPVFQKKADADKTKTFAEIKDYYHKGYA
                     TDIEMIGIEDGIVEFHRNNETTSCKYDYDGYKILTYKSGKKGVRYLFECKDPESKAPK
                     YIQFSDHIIAPRKSSHFHIFMGNDSQQSLLNEMENWPTYYPYQLSSEEVVEEMMSH"
     gene            complement(2606..3241)
                     /gene="msrQ"
                     /locus_tag="JN078_003650"
     CDS             complement(2606..3241)
                     /gene="msrQ"
                     /locus_tag="JN078_003650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase
                     heme-binding subunit MsrQ"
                     /protein_id="HAY9042706.1"
                     /translation="MRLTAKQVTWLKVSLHLAGLLPFLWLVWAINHGGLGADPVKDIQ
                     HFTGRTALKFLLATLLITPLARYAKQPLLIRTRRLLGLWCFAWATLHLTSYALLELGV
                     NNLALLGKELITRPYLTLGIISWVILLALAFTSTQAMQRKLGKHWQQLHNFVYLVAIL
                     APIHYLWSVKIISPQPLIYAGLAVLLLALRYKKLRSLFNRLRKQVHNKLSV"
     gene            complement(3242..4246)
                     /gene="msrP"
                     /locus_tag="JN078_003651"
     CDS             complement(3242..4246)
                     /gene="msrP"
                     /locus_tag="JN078_003651"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HAY9042707.1"
                     /translation="MKKNQFLKESDVTAESVFFMKRRQVLKALGISAAALSLPHAAHA
                     DLLSWFKGNDRPPAPAGKPLEFSKPAAWQNNLPLTPVDKVSGYNNFYEFGLDKADPAA
                     NAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFP
                     LHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLT
                     LMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYG
                     FYANVNPHVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYADQVASLYRGLDLRENF
                     "
     gene            complement(4355..4711)
                     /gene="hiuH"
                     /locus_tag="JN078_003652"
     CDS             complement(4355..4711)
                     /gene="hiuH"
                     /locus_tag="JN078_003652"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HAY9042708.1"
                     /translation="MVYAAQQNILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTA
                     KTDKDGRIKALWPEQTATTGDYRVVFKTGDYFKKQNLESFFPEIPVEFHINKVNEHYH
                     VPLLLSQYGYSTYRGS"
     gene            4882..5553
                     /gene="hprR"
                     /locus_tag="JN078_003653"
     CDS             4882..5553
                     /gene="hprR"
                     /locus_tag="JN078_003653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707854.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor HprR"
                     /protein_id="HAY9042709.1"
                     /translation="MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD
                     YALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPF
                     SFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLA
                     SRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF
                     VAVKK"
     gene            5553..6911
                     /locus_tag="JN078_003654"
     CDS             5553..6911
                     /locus_tag="JN078_003654"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal sensor histidine kinase"
                     /protein_id="HAY9042710.1"
                     /translation="MKRLSITVRLTLLFILLLSVAGAGIVWTLYNGLASELKWRDDTT
                     LINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHGDGINKIVNRTNVSDDMLN
                     NIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKIN
                     SIIICIVAIVLCSVLSPLLIRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPL
                     GQALNKMHQALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIA
                     GNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICF
                     KVECNQQIFADKILLQRMLSNLIVNAIRYSPEKSRIHITSFLDTNGYLNIDIASLGTK
                     IHEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSASYHYLNKHNVFRITLPQ
                     RN"
BASE COUNT         2022 a         1484 c         1626 g         2063 t
ORIGIN      
        1 gctgagaaaa aagcgtgctt tcccaatctg gggcaaatca cgtctgaatg acacctgaaa
       61 acaggtggtg gactcaagaa ggcttggaat attcttcttt aatgttatgt aattcattga
      121 tttttcgtgt acgattttaa gacatttttt ccaagaaaaa tttttaactc tttgattttt
      181 cgactctgta tcatcggtct cgaaaaccgg agtaggggca actctaccgg gggggcaaat
      241 ccccctctct ccgccacttt atcaatgact tatctcccga cttcccgcct tacttttcct
      301 aaacagaaca atcgtagaat attcttgaag ggttagatcg tcactgtttt ctgttcgata
      361 ctgtgacatt cagcacttga ttcgctatgg atctgacagg aagctttcga gcgaaaatgt
      421 gcagttattc agtcgttttc ttatcgctca ccattattct tttagacatt catcctatga
      481 aactgccgca aagttggtgg tgggaactga agttgcgtag agaaggggtc aataattgag
      541 tcaaaaaagg aacgcggccg tcagattaaa gccgcgggac aaagtccata atttccaaga
      601 gttgttgaat ttcccagctt ttttgaaagc ctttgtatca tactaacaag taaaaaaggt
      661 ttaaatacca aaattaacct gtatttttga taaatcttac cattgtacga tttacacagt
      721 ttctgctcct ccttgttgat agtggaaagg gtgcattgtg cacttgcgta aacatttatg
      781 acgcgttgat gtccatggtt cacatttcct tgtcagggga tcgacttatt tgcggcgagg
      841 catcattcgt aacagagtat tatctttctg aatgtagtga tgaaagagtg ctgcgccagc
      901 gtgagctgcg attaaaaagt aacctatatt tgcccaggtt tcgtgaatat tttatatcag
      961 tgctttaatt tcgctgtttg gggtaacaaa gggagacaca ttgaaaccaa ggaaactcca
     1021 cgattttcca ctgtaagcca tcaaagcaat ccccagcaga ggaagtgcaa ggaaggttat
     1081 ataaagcatg atgtgcatta gcgaagccgc tttcatttgc caggcaggtg gcggtggcac
     1141 aatagaagga tcactataac ggtgttttat aatcaggcgt gaaaacatta acacccaaac
     1201 gaatataccc gcattgtaat gtgtttctcg catcagcaga taagtactac tacctttagg
     1261 aaaccagcca cggagttcca tcgcggcata ggttattgca acgaaaagca gcgttatcca
     1321 atgtaaataa atttgagttt ttgagaatcg gttcattttt gtagctcctg taatttttac
     1381 agtcaagcta tcccacgaac cttaaaaatt ccttatacag atgtggtttt aagaatttgt
     1441 tatttaaaaa attgatagtg cacattgtaa ccagccaata taagcaatgg cgtgagcaca
     1501 ggtatctttc tctgttggcc gtattgtgta tggaatccgt tattggttaa ctcaatgcgg
     1561 gttagcttat taatatacag acacgtcata gtgatgagcg tgtctgtagc tagcttgcgt
     1621 tcagtggcgt ttgtggatgg accagtggca gttatgatga cttactaaag cggcatcgag
     1681 gcgttatcat gagaatactc aatgagacat catttcctcg accacttctt cgctactcaa
     1741 ctgatatgga taatacgttg gccagttttc catttcattt aataaagatt gctgtgaatc
     1801 attacccata aaaatgtgaa aatgagatga ttttcgtggt gcaattatat gatcgctaaa
     1861 ttgtatatat ttaggggctt tgctttcagg atctttacat tcgaataagt aacgaacgcc
     1921 tttcttgcct gatttatagg tgagtatttt gtatccatcg taatcatatt tacaggatgt
     1981 tgtttcatta tttctatgga attcaacaat gccgtcctca atgccaatca tctcgatatc
     2041 tgttgcataa cctttgtgat aataatcttt aatttcagca aatgttttag ttttatctgc
     2101 atccgctttc ttctgaaaga cggggtcaag tttgccactt tgcagtaaag gataaacgga
     2161 ttgccagacc ccatcccagt cactgagcgt tcggttttgt acattggcat catcaaaaac
     2221 accattagca gctttttgtt cgacctctgt taagggtttg ccgtgtgagt gatgaccatg
     2281 cgaaaaggca ggagcgctaa caataaagac acctaacgca acagccagtt tgtgaagacg
     2341 aatcgccaaa acagtttcct ccagagtcat tgtatatgat gtgtaatgtt atattgtaac
     2401 atatggcaaa atgcaacaac tcttaggaga tgagagcata gttttctcag gtgtacttat
     2461 ctatcttatt gaaataaaat gaattatatt gataatttga ggttgatgac aaacgaaaca
     2521 taatctgatg tgatctgcgt aggccggata gggcgctcgc gccgcatccg gcagggataa
     2581 cgcgtacttt gtcggcaata tgaagttata cagataattt gttgtgaacc tgcttgcgta
     2641 accggttaaa aagggaacgc aacttcttat accgtaaggc taaaagcagt acagccagcc
     2701 cagcgtagat gagcggctgc ggtgaaataa tcttcactga ccacagataa tgtattgggg
     2761 ccaggatcgc gacaagatag acgaaattat gcaactgttg ccagtgcttg ccgagttttc
     2821 gctgcatcgc ctgggttgaa gtaaacgcta aagcaagcaa aataacccag ctgataattc
     2881 ctaacgttaa ataaggccgg gtaattaact ccttgcctaa taacgccaga ttattcacgc
     2941 ccagctccag caatgcgtaa ctggttaaat gcagtgtcgc ccaggcaaag caccataagc
     3001 ctaacaggcg gcgagtgcgt atcaataacg gctgttttgc gtagcgtgcc agaggtgtga
     3061 ttaacaaggt cgccagcaaa aatttcagtg cagtgcgacc ggtaaaatgc tgaatatctt
     3121 tcaccggatc ggcacccagt ccaccgtgat tgatcgccca gaccagccag agaaacggca
     3181 acaatccggc aagatgcagg ctaactttca gccatgtcac ctgttttgct gtcagacgca
     3241 ttcagaaatt ctcccgcaaa tccaggccac gatacagcga tgccacctgg tcggcgtaac
     3301 cattaaacag tagcgttggc tggcgctgaa catcgaggat gccgcctgaa ccaataaatc
     3361 gttcggtagc ctgtgaccag cgcgggtgat caacatgcgg attaacgttg gcgtaaaaac
     3421 cgtattcgtc aggcgctgcc agattccagg tggttggcgg acgctcgcgg gtcagcttaa
     3481 tactgactat cgatttaatc cctttaaagc catatttcca cggcacaatc agtcgtaccg
     3541 gcgcgccatt ttgtggcggt aacgccttgc cataaacacc cacggtcatc agtgtgagcg
     3601 gatgcattgc ttcgtcgaga cgcaatcctt cgacataagg atatttcagc ccgccgccga
     3661 taaagcggtc ctgctggcct ggcatttgtt ccggtgcata aattgtttcg aaagcgacat
     3721 acttcgcatt gctggtgggt tcggcaagcg ccagcaattt gtgcagcgga aaaccaatcc
     3781 acggcaccac catcgaccat gcctccacgc agcgcatacg ataaatacgc tcttccagcg
     3841 ggaagcgacg ggttaaatca tcgtgatcga gggtcaatgg ttttgccact tcgccgctga
     3901 ttttcagtgt ccatggatcg gttttcaggc taccagcatt agcggcggga tcggctttat
     3961 ccagcccgaa ttcatagaag ttgttataac cggagacttt atctactggc gtcagtggca
     4021 ggttattttg ccaggcggca ggcttgctga actccagcgg ttttccggcg ggggcgggcg
     4081 ggcgatcgtt ccctttaaac cagctaagca gatcggcatg cgcagcgtga ggcaaagaaa
     4141 gtgcagctgc actgatgccc agtgctttta acacctgccg acgcttcata aagaataccg
     4201 actcggccgt aacatctgat tcttttaaaa attgattctt tttcataagc catcacactt
     4261 ttttgtcgtt agccagcaag agccgtttac tgttaatctg tcagggagtg tcctccctaa
     4321 cagtagcaga gatctgcttt tacatattta tgcattaact gccacgatag gttgaatacc
     4381 catattggct aagtaataaa ggcacatgat aatgctcgtt cactttatta atatgaaatt
     4441 caacggggat ctcagggaag aaactttcaa gattttgttt cttgaaatag tccccggttt
     4501 taaatacgac acggtaatcg cccgtagttg cagtttgctc gggccacagt gctttaattc
     4561 gtccatcctt atctgttttg gcggtattaa gttgtaacca gccgttatcc gccttctttt
     4621 caagagtgac tgtcacgtca gcagcgggtt ttccggtttg ctggttcaaa atgtgcacgc
     4681 taagaatgtt ttgttgtgcg gcataaacca aagaaggtaa tgaaaatgct gcaaataacg
     4741 ctttaacatg tttatatcct tgtcatgtga atgagttttg aggatagcga aaaagcggcc
     4801 agggtaacct tacagcagca ttacaatttt gtaatgaacc aggctgtttc tataacatat
     4861 gatttatggc atattatttt catgaagatt ttacttattg aagataatca aaggacccag
     4921 gagtgggtaa cgcaggggct ttccgaagcg ggttatgtca ttgatgccgt ttctgatggc
     4981 agagatgggc tttatcttgc gctgaaggat gattatgcat tgataattct ggatattatg
     5041 cttccgggta tggatggctg gcagatctta caaacgttaa gaacagcaaa gcaaacccct
     5101 gttatttgcc ttactgcaag ggattctgtc gatgacagag tcagagggct ggacagtgga
     5161 gcaaatgatt atctggtaaa acctttttca ttttctgagt tgctggcaag ggttcgggca
     5221 caattaaggc aacatcacgc tttgaattca acattagaaa tcagtggctt aagaatggac
     5281 tctgtaagtc aaagtgtgag cagggacaat atcagtatta cactgacgcg caaggagttt
     5341 cagttacttt ggctactggc ctccagagct ggcgaaatta tacccagaac ggttattgcg
     5401 agtgaaattt ggggaatcaa ctttgatagt gataccaata cggtggatgt cgccattcgc
     5461 aggctccgcg caaaagttga tgatcctttt cctgaaaagc taatcgccac aatccggggg
     5521 atgggctatt cattcgtagc ggtaaaaaaa taatgaaaag attgtctata accgtccgtt
     5581 taaccttgct ttttatattg ctgctgtctg ttgctggcgc tggaattgtc tggactctct
     5641 ataatggcct ggcaagtgag ttgaaatggc gcgatgatac aacactcatt aaccggacag
     5701 cacagatcaa gcagttgtta attgatgggg taaatccaga tacgttacct gtatacttta
     5761 accggatgat ggatgttagt caggatatct tgatcattca tggtgatggc atcaataaaa
     5821 ttgttaaccg gacaaatgtc agtgatgaca tgttaaataa catacctgct agtgagacaa
     5881 tcagcgcagc tggcatttac agaagcatta ttaatgatac tgagattgat gctttacgaa
     5941 ttaatattga tgaagtttcg ccatcattaa cggttactgt ggctaaattg gcttcagcta
     6001 gacataacat gcttgaacag tataaaatta atagcattat aatttgcatt gtcgccattg
     6061 tactttgctc agtattaagt ccgctgttaa tcagaacggg attacgagag atcaaaaagt
     6121 tgagtggtgt aacggaagcg ctgaattata acgatagccg agagcctgtt gaggttagcg
     6181 cattaccgag agaactaaaa cctcttgggc aggcgttgaa taaaatgcat caagccttag
     6241 tcaaagattt tgaacgccta agtcaatttg ctgacgatct cgctcatgaa cttagaacgc
     6301 ccattaatgc attactgggt cagaatcagg ttacgctcag tcaaaccaga agtatcgctg
     6361 aatatcaaaa aacaattgcc ggtaacattg aagagttgga aaatatttcg cggttaacag
     6421 agaacatact gtttcttgcc cgggcagata aaaacaatgt tttggtgaaa ctggactcgc
     6481 tttctctcaa taaggaagtc gaaaatttgt tggattatct tgaatatctt tcagacgaga
     6541 aagagatttg ctttaaggtc gagtgcaatc agcaaatctt tgcggataaa attttactgc
     6601 aacgaatgtt atcgaatctt attgttaatg ccattagata ttcaccagaa aaatcgcgta
     6661 ttcatataac cagttttctt gataccaacg gctatcttaa tattgatatc gccagtcttg
     6721 gaacgaaaat acatgagcct gaaaaactct tccgtagatt ttggcgggga gataattcgc
     6781 gtcattccgt aggtcaggga cttggtcttt ctttagtcaa agcgattgcc gaattgcatg
     6841 ggggaagtgc ttcatatcac tatctcaata agcataatgt gttccgaatt acgttaccgc
     6901 aaagaaatta acatagggct tcagtacgcc ataaattaac cgtgaaaaaa cgcagccacg
     6961 tcgtgagtac taacgcggct gcgattaatt atgcgcttac attcaaacgt aacagggatt
     7021 aacccgcgta agctgccagc atttcctgcg ccgccagttt acccaacgca ttcgctgcga
     7081 aaggactgtc gccggtgaga agtttacggt ccttatgtac tcgcccggtg atgtcgtcat
     7141 taatgatgtt catgcccatt ttcttcagct cttcgccgaa gtaccaggtg agatg
//
LOCUS       DADMJB010000187         7120 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.190, whole genome shotgun sequence.
ACCESSION   DADMJB010000187 DADMJB010000000
VERSION     DADMJB010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7120)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7120)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7120
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.190"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..648
                     /locus_tag="JN078_003655"
     CDS             <1..648
                     /locus_tag="JN078_003655"
                     /EC_number="4.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709490.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophanase"
                     /protein_id="HAY9042711.1"
                     /translation="TYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVV
                     QEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGH
                     AAFVDAGKLLPNIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAE
                     LLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTYEPKVLRHFTAKLKEV"
     gene            739..1986
                     /gene="tnaB"
                     /locus_tag="JN078_003656"
     CDS             739..1986
                     /gene="tnaB"
                     /locus_tag="JN078_003656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low affinity tryptophan permease TnaB"
                     /protein_id="HAY9042712.1"
                     /translation="MTDQAEKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAF
                     ILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGITVAFVLYILTY
                     AYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKI
                     ISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIIC
                     YGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLG
                     TKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNSHGGRFKTVLLTFLPP
                     ALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIV
                     ILFGITVILCWFGNVFNVLPKFG"
     gene            2118..3293
                     /gene="mdtL"
                     /locus_tag="JN078_003657"
     CDS             2118..3293
                     /gene="mdtL"
                     /locus_tag="JN078_003657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtL"
                     /protein_id="HAY9042713.1"
                     /translation="MSRFLICSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAF
                     SVYLAGMAAAMLFAGKVADRSGRKPVAIPGAALFIIASVFCSLAETSTLFLAGRFLQG
                     LGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLF
                     WAMAMMGIAVLMLSLFILKETRPASPAASDKPRENSESLLNRFFLSRVVITTLSVSVI
                     LTFVNTSPVLLMEIMGFERGEYATIMALTAGVSMTVSFSTPFALGIFKPRTLMITSQV
                     LFLAAGITLAVSPSHAVSLFGITLICAGFSVGFGVAMSQALGPFSLRAGVASSTLGIA
                     QVCGSSLWIWLAAVVGIGAWNMLIGILIACSIVSLLLIMFVAPGRPVAAHEEIHHHA"
     gene            3268..4227
                     /gene="yidZ"
                     /locus_tag="JN078_003658"
     CDS             3268..4227
                     /gene="yidZ"
                     /locus_tag="JN078_003658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator YidZ"
                     /protein_id="HAY9042714.1"
                     /translation="MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLA
                     KLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAEWMQMSNLLLDKPHHQTPRGLKFELA
                     AESPLMMIMLNALSKRIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSR
                     ELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHETWNLDTFLRYPHISICWEQSDTWAL
                     DNVLQELGRERTIAMSLPEFEQSLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPL
                     PFDESQQKKLEVPFTLLWHKRNSHNPKIVWLRETIKNLYASMA"
     gene            4384..5133
                     /locus_tag="JN078_003659"
     CDS             4384..5133
                     /locus_tag="JN078_003659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709485.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042715.1"
                     /translation="MATHFARGILTEGHLISVRLPSQCHQEARNIPPHRQSRFLASRG
                     LLAELMFMLYGIGELPEIVTLPKGKPVFSDKNLPSFSISYAGNMVGVALTTEGECGLD
                     MELQRATRGFHSPHAPDNHTFSSNESLWISKQNDPNEARAQLITLRRSVLKLTGDVLN
                     DDPRDLQLLPIAGRLKCAHVNHVEALCDAEDVLVWSVAVTPAIEKLSVWELDGKHSWK
                     SLPDIHSRANNPTSRMMRFAQLSTVKSFSPN"
     gene            5155..5721
                     /gene="yieF"
                     /locus_tag="JN078_003660"
     CDS             5155..5721
                     /gene="yieF"
                     /locus_tag="JN078_003660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent chromate oxidoreductase YieF"
                     /protein_id="HAY9042716.1"
                     /translation="MSEKLQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIA
                     DIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLP
                     DQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNKPEFMGGVIQNKVDRQT
                     GEVIDQGTLDHLTGQLTAFGEFIQRVKI"
     gene            complement(5775..7112)
                     /locus_tag="JN078_003661"
     CDS             complement(5775..7112)
                     /locus_tag="JN078_003661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HAY9042717.1"
                     /translation="MSQQHTTQASGQGMLERVFKLREHGTTARTEVIAGFTTFLTMVY
                     IVFVNPQILGVAGMDTSAVFVTTCLIAAFGSIMMGLFANLPVALAPAMGLNAFFAFVV
                     VQAMGLPWQIGMGAIFWGAVGLLLLTIFRVRYWMIANIPVSLRVGITSGIGLFIGMMG
                     LKNAGVIVANSETLVSIGNLTSHSVLLGILGFFIIAILASRNIHAAVLVSIVVTTLLG
                     WMLGDVHYNGIVSAPPSVMTVVGHVDLAGSFNLGLAGVIFSFMLVNLFDSSGTLIGVT
                     DKAGLADEKGKFPRMKQALYVDSISSVTGSFIGTSSVTAYIESSSGVSVGGRTGLTAV
                     VVGLLFLLVIFLSPLAGMVPGYAAAGALIYVGVLMTSSLARVNWQDLTESVPAFITAV
                     MMPFSFSITEGIALGFISYCVMKIGTGRLRDLSPCVIIVALLFILKIVFIDAH"
BASE COUNT         1692 a         1821 c         1803 g         1804 t
ORIGIN      
        1 acctacaaat atgccgatat gctggcgatg tccgccaaga aagatgcgat ggtgccgatg
       61 ggcggcttgc tgtgcatgaa agacgacagc ttctttgatg tgtacaccga gtgcagaacc
      121 ctttgcgtgg tgcaggaagg cttcccgaca tatggcggcc tggaaggcgg cgcgatggag
      181 cgtctggcgg taggtctgta tgacggcatg aatctcgact ggctggctta tcgtatcgcg
      241 caggtacagt atctggtcga tggtctggaa gagattggcg ttgtctgcca gcaggcgggc
      301 ggtcacgcgg cattcgttga tgccggtaaa ctgctgccga atatcccggc agaccagttc
      361 ccggcacagg cgctggcgtg cgagctgtat aaagtcgccg gtatccgtgc ggtagaaatt
      421 ggctctttcc tgttaggccg cgatccgaaa accggtaaac aactgccatg cccggctgaa
      481 ctgctgcgtt taaccattcc gcgcgcaaca tatactcaaa cacatatgga cttcattatt
      541 gaagccttta aacatgtgaa agagaacgcg gcgaatatta aaggattaac ctttacctac
      601 gaaccaaaag tattgcgtca cttcaccgca aaactgaaag aagtttaatt aatactacag
      661 agtggctata aggatgttag ccactctctt accctacatc ctcaataaca aaaatagcct
      721 tcctctaaag gtggcatcat gactgatcaa gctgaaaaaa agcactctgc attttggggt
      781 gttatggtta tagcaggtac agtaattggt ggaggtatgt ttgctttacc tgttgatctt
      841 gccggtgcct ggtttttctg gggtgccttt atccttatca ttgcctggtt ttcaatgctt
      901 cattccgggt tattgttatt agaagcaaat ttaaattatc ctgtcggctc cagttttaac
      961 accatcacca aagatttaat cggtaacacc tggaacatta tcagcggtat taccgttgcc
     1021 ttcgttctct atatcctcac ttatgcctat atctctgcta atggtgcgat cattagtgaa
     1081 acgatatcaa tgaatttggg ctatcacgct aatccacgta ttgtcgggat ctgcacagcc
     1141 attttcgttg ccagcgtatt gtggataagt tcgttagccg ccagtcgcat tacctcattg
     1201 ttcctcgggc tgaagattat ctcctttgtg atcgtgtttg gttctttctt cttccaggtc
     1261 gattactcca ttctgcgcga tgccaccagc accactgcgg gaacgtctta cttcccgtat
     1321 atctttatgg ctttgccggt gtgtctggcg tcatttggtt tccacggcaa tattcccagc
     1381 ctgattattt gctatggaaa acgcaaagat aagttaatca aaagcgtggt atttggttcg
     1441 ctgctggcgc tggtgattta tctcttctgg ctctattgca cgatggggaa tattccgcgc
     1501 gaaagcttta aggcgataat ctcctcaggc ggcaacgttg attcgctggt gaaatcgttc
     1561 ctcggcacca aacagcacgg cattatcgag ttttgcctgc tggtgttctc taacttagct
     1621 gttgccagtt cgttctttgg tgtcacgctg gggttgttcg attatctggc ggacctgttt
     1681 aagattgata actcccacgg cgggcgtttc aaaaccgtgc tgttaacctt cctgccacct
     1741 gcgttgttgt atctgatctt cccgaacggc tttatttacg ggatcggcgg tgccgggctg
     1801 tgcgccacca tctgggcggt cattattccc gcagtgcttg caatcaaagc tcgcaagaag
     1861 tttcccaatc agatgttcac ggtctggggc ggcaatctta ttccggcgat tgtcattctc
     1921 tttggtataa ccgtgatttt gtgctggttc ggcaacgtct ttaacgtgtt acctaaattt
     1981 ggctaaatcc ttcaagaagc cagccattcg ctggcttctt gcctctcagg aaatcactta
     2041 tgtccaaatg gcaactcgcc tgatcctcct tcaccacgta tgctttgcgt caccttacta
     2101 tcaggacgct ttagcccatg tcccgctttt tgatttgtag ttttgccctg gttttacttt
     2161 atcccgccgg gattgatatg tacctcgttg gtttaccgcg catcgccgcc gatctcaatg
     2221 ccagcgaagc gcagttgcat attgcgttct ccgtatatct ggcggggatg gcagctgcga
     2281 tgttatttgc cggtaaagtg gccgatcgtt cagggagaaa gccggtcgcc atacccggcg
     2341 cggcgctatt tattattgcc tcggtgttct gttcactggc tgaaaccagc acgttatttc
     2401 ttgcaggccg atttctacag gggttgggcg caggctgttg ttacgtagtg gcgttcgcca
     2461 ttttgcgcga cacgctggat gatcgacgtc gggctaaagt gctgtcatta ctcaacggta
     2521 ttacctgcat cattccggtg ttagcgccag tgctcggaca tctgattatg cttaaattcc
     2581 cgtggcagag tctgttctgg gcgatggcaa tgatgggcat cgcggtactg atgttgtctt
     2641 tgtttatttt aaaagaaacg cgcccagcgt cccccgctgc ttcggacaaa ccacgagaaa
     2701 atagcgagtc gctgcttaat cggtttttcc tcagccgtgt tgttatcacc accctcagcg
     2761 tttcggtgat cctcactttc gtcaatacat cgccggtatt gctgatggaa atcatgggtt
     2821 ttgagcgcgg agaatacgcc accattatgg cgttgaccgc tggcgtcagc atgaccgttt
     2881 cattctccac gccatttgcg ctgggaattt ttaagccacg tacgttgatg atcacctcgc
     2941 aggtgttatt ccttgcagcg gggatcaccc ttgccgtttc accttcccat gcggtttctc
     3001 tgtttggtat cacactgatt tgcgccggtt tctcggtagg ttttggcgta gcgatgagtc
     3061 aggcgttagg accattttca ttacgcgcgg gcgtagccag ctcgacctta ggtattgcgc
     3121 aggtttgcgg ttcgtcactg tggatttggc tggcagcggt ggttggtatc ggcgcatgga
     3181 atatgctgat cgggattctg attgcctgta gcatagtgag cctgttgctg attatgttcg
     3241 tcgcgcctgg acgccccgtt gccgctcatg aagaaatcca tcaccacgct tgatctcaat
     3301 ctgctgctct gtctgcaact gctgatgcag gagcgcagcg tgaccaaagc ggcgaagcgg
     3361 atgaacgtga ccccttcagc ggtgagtaag tcgctggcaa agttaagagc gtggtttgac
     3421 gacccgctct ttgtgaactc accgctgggg ctgtcgccca caccgctaat ggtcagcatg
     3481 gagcaaaatc tggcggaatg gatgcaaatg agcaatctgc tgctggataa accgcaccac
     3541 cagacaccgc gcggcctgaa gtttgagttg gcggcggaat cgccgctgat gatgatcatg
     3601 cttaatgcgc tgtcgaaacg gatctaccaa cgttacccgc aggcgaccat caaactacgt
     3661 aactgggatt acgattcctt agatgccatt actcgtggtg aagtggatat tggtttttcc
     3721 ggtcgcgaaa gccatcctcg ctcgcgggag ctgttaagct cgctaccgtt agccattgat
     3781 tatgaagtgc tgtttagtga tgtaccctgc gtctggttac gcaaagatca tccggcactg
     3841 catgaaacgt ggaatctgga caccttttta cgttatccgc atatcagcat ttgctgggaa
     3901 cagagcgaca cctgggcgct ggacaatgtg ttacaggagc tggggcgcga acgcacgatt
     3961 gctatgagcc tgccggaatt tgagcagtca ctgtttatgg cagcgcaacc cgacaatctg
     4021 ctactggcga ccgcgccgcg ctactgtcag tactacaatc aactccatca actgccgttg
     4081 gttgctcttc ctctcccgtt tgacgaaagc cagcaaaaaa agctggaagt tccttttacc
     4141 ctgctgtggc ataaacggaa cagtcataat ccgaagatcg tctggttacg ggaaaccatt
     4201 aaaaaccttt acgcgtcgat ggcataaccg aatcgtatga aacgcgaccc aatttcacaa
     4261 taaaatgtaa aaaagttgta ataagcttgt ctgaatcgaa cttttagccg ctttagtctg
     4321 tccatcattc cagtaaatga ttactcttat attcataatg gaccattaag catggagcga
     4381 aaaatggcga ctcactttgc ccgagggatt ttaacggaag gacatctgat ttctgttcgt
     4441 ctcccctccc agtgtcatca agaagcccga aacattcccc ctcatcgtca aagccgtttt
     4501 ctggcgtcca gaggtttact cgcagaactg atgttcatgc tgtatggcat tggcgaattg
     4561 ccggaaatcg tcaccctgcc gaaaggtaaa ccggttttca gtgataaaaa tttgccttcg
     4621 ttttctattt cctatgccgg gaatatggtt ggcgtggcgt taacaaccga aggtgaatgt
     4681 ggcctcgata tggaactaca gcgtgcgacg cgcgggtttc atagcccaca cgcgcccgat
     4741 aaccacacct tttccagcaa tgaatcgcta tggatcagta aacaaaacga tcctaacgaa
     4801 gcgcgggcgc agctcatcac gctgcgccga agcgtgctaa aactaaccgg tgatgttttg
     4861 aatgacgatc cgcgcgatct gcagctgctg cccattgccg gacgcctgaa atgtgctcat
     4921 gtaaatcatg tagaagcgtt atgcgacgcg gaggacgtgc tggtgtggtc cgtggcggtc
     4981 acgcccgcga ttgaaaagct cagtgtctgg gagttagatg gcaaacacag ctggaaaagc
     5041 ctgccggata ttcacagccg cgccaacaat cctaccagcc ggatgatgcg ttttgcccag
     5101 ctctctaccg tgaagtcttt ttcgccaaat tgatagacaa ccacaggagt cattatgtct
     5161 gaaaaattgc aggtggttac gttactgggg agcctgcgca aaggctcatt taatggcatg
     5221 gttgcacgta ccctgccgaa aattgctccg gcgagcatgg aagtcaatgc gttaccttcc
     5281 attgccgaca ttcccctgta tgacgctgac gtacagcagg aagaaggttt tccagcaacg
     5341 gttgaagctc tggcggaaca gatccgtcag gctgacggtg tggtgatcgt cacgccggaa
     5401 tataactact cggtaccggg tgggctgaaa aatgccatcg actggctttc ccgcctgccg
     5461 gatcaaccgc tggccggtaa accggtgttg attcagacca gctcaatggg cgtgattggc
     5521 ggcgcgcgct gtcagtatca cctgcgccag attctggttt tcctcgatgc aatggtgatg
     5581 aacaagccgg aatttatggg cggcgtgatt cagaacaaag ttgatcggca aaccggagaa
     5641 gtgattgatc agggtacgct ggaccacctg accgggcaat tgaccgcatt tggtgagttt
     5701 attcagcgag ttaagatcta aataaaaaac ccgccagtaa tcatgcatgg cgggttttta
     5761 atgcgctatc gattttaatg agcgtcgata aatacaatct tcaggataaa cagcagcgca
     5821 acgatgatta cgcacgggct aaggtcacgc agacgcccgg taccaatctt catcacgcag
     5881 taggagataa agcccagcgc aataccttcg gtaatcgaaa agctgaacgg catcatcacg
     5941 gcggtaataa acgccggaac agattcagta agatcctgcc agttcacgcg agcaagactt
     6001 gaggtcatca acacgccaac gtagatcaac gcgccagctg cagcgtagcc tggcaccatt
     6061 cccgccagcg gcgacagaaa gataaccagc aggaacagca gaccaacaac cactgccgtc
     6121 agaccggtac gaccgccaac cgatacgccg gaagaggact caatataagc cgtaacggaa
     6181 gaagtaccga taaacgaacc ggtcacggaa gagatactgt cgacatacag cgcttgcttc
     6241 atgcgcggga atttcccctt ctcatccgcc agacctgctt tatcggtcac gccaatcagc
     6301 gtaccggagg agtcaaacaa gttgaccaac atgaaagaga aaatcacccc tgccagcccg
     6361 aggttaaacg acccggctaa atctacatga cccacaactg tcattacgct cggcggcgca
     6421 gaaacgatgc cattgtagtg cacatcaccc agcatccagc ccagcagcgt cgtcaccacg
     6481 atagaaacca gcaccgctgc gtgaatgttg cgcgaggcca gaatagcaat gatgaagaag
     6541 ccgaggatac ccagaagtac gctgtgagaa gtcagattac cgatgctcac cagcgtttcc
     6601 gagttagcga caatcacacc tgcgtttttc agccccatca tgccgataaa caggccgata
     6661 ccgctggtaa tacccacacg cagacttacc ggaatgttag caatcatcca gtaacgaacg
     6721 cggaaaatgg tcaaaagaag cagtccgaca gcgccccaga agattgcgcc cataccgatc
     6781 tgccacggca gccccattgc ctggacaacc acaaaagcga aaaaggcgtt aagccccatc
     6841 gcaggagcca gcgccaccgg aaggtttgca aacaatccca tcataatgct accgaaagca
     6901 gcaatcagac aggttgttac gaagacggca ctggtgtcca tgccagcaac gcccagaatt
     6961 tgtgggttaa caaaaacgat gtaaaccatc gtcaggaagg tggtaaaacc ggcgatcact
     7021 tcggtccgtg ccgtcgtgcc atgttcgcgc agtttaaaca cgcgttccag catcccctgg
     7081 ccagaagcct gggttgtgtg ttgttgactc attatctatt
//
LOCUS       DADMJB010000188         7056 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.191, whole genome shotgun sequence.
ACCESSION   DADMJB010000188 DADMJB010000000
VERSION     DADMJB010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7056
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.191"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            40..246
                     /locus_tag="JN078_003662"
                     /pseudo
     CDS             40..246
                     /locus_tag="JN078_003662"
                     /inference="COORDINATES: protein motif:HMM:TIGR02601.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            991..2904
                     /locus_tag="JN078_003663"
                     /pseudo
     CDS             991..2904
                     /locus_tag="JN078_003663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001306477.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(3032..3754)
                     /locus_tag="JN078_003664"
     CDS             complement(3032..3754)
                     /locus_tag="JN078_003664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-demethylubiquinone
                     3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol
                     methylase"
                     /protein_id="HAY9042718.1"
                     /translation="MNAEKSPENHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLR
                     LGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESG
                     IQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTL
                     NRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNP
                     LTNTFKLGPGVDVNYMLHTQNK"
     gene            3901..6528
                     /gene="gyrA"
                     /locus_tag="JN078_003665"
     CDS             3901..6528
                     /gene="gyrA"
                     /locus_tag="JN078_003665"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HAY9042719.1"
                     /translation="MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPV
                     HRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYML
                     VDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMP
                     TKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFP
                     TAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEK
                     IAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINM
                     VALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDP
                     IIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYL
                     TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELEL
                     VREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKG
                     KSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLP
                     LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDEL
                     IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRG
                     DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMI
                     TDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAA
                     EGDDEIAPEVDVDDEPEEE"
     gene            6677..>7056
                     /locus_tag="JN078_003666"
     CDS             6677..>7056
                     /locus_tag="JN078_003666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416733.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2138 family protein"
                     /protein_id="HAY9042720.1"
                     /translation="MSGEKKAKGWRFYGLVGFGAIVLLSAGVWALQYAGSGPEKTLSP
                     LVMHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIE
                     GSIRRIVYEHDLTLKDKLFSSLLD"
BASE COUNT         1693 a         1743 c         2013 g         1607 t
ORIGIN      
        1 ggctatggag atggtccttc cactgcggcg ggtggcttta tgtatctcgg cttaagtgaa
       61 gttacctttg atattgccga cggaaaaacg ctggttatcg gcaatacaga gaatgacgga
      121 gctgttgact ctattgctgg taccgggttg atcaccaaaa caggttccgg cgatctggta
      181 cttaatgcag ataacaatga ctttactggc gagatgcaga ttgaaaacgg tgaagttacc
      241 ctgggccgca gcaactccct gatgaatgtc ggcgatacgc attgccagga cgatccgcaa
      301 gactgctacg gtctgacgat agggagtatt gataagtacc agaatcaggc agagctaaac
      361 gttggctcca cccaacaaac ctttgtgcac tcattgacgg gctttcagaa tggcacttta
      421 aatatcgatg ctggtggcaa tgttactgtt aatcaaggta gttttgctgg caccatcgaa
      481 ggtgctggtc agctcaccat tgcgcaaaac ggcagctacg tgctgtcggg ggcgcagtcg
      541 atggcgctaa ccggcgatat agtcgttgat gatggtgcgg tgctttcgct ggaaggcgac
      601 gcggcagatc tcgccgctct ccaggacgat ccgcagtcga tcgtgttaaa cggcggtgtg
      661 ctcgatctct ctgatttctc cacctggcag agcggcacat catacaatga tggccttgaa
      721 gtcagtggca gcagcggaac ggttatcggc agtcaggatg tggtagatct tgcaggtggc
      781 gacaatttgc atatccgcgg cgacgggaaa gatggcgtct acgtggtggt cgatgcgagc
      841 gacgggcagg taagtctggc aaacaataat agttatttgg gcacaacaca aatcgcctcc
      901 ggtacgctga tggtgagcga caactcgcag cttggagata cccactataa ccgccaggtt
      961 atctttaccg ataagcaaca agaaagcgtg atggagatta ctgccaatgt cgatactcgc
     1021 tctacgacga ctgagcatgg gcgtgatatt gaaatgcgcg ccgacggtga agtggcagtt
     1081 gatgcggggg tagacacgca gtggggcgca ctgatggctg acagcagcgg gcagcatcag
     1141 gatgagggta gcacatttac taaaacgggg gcgggtacgc tggagctgac cgccagcggt
     1201 acaacgcagt cggcagtacg tgtcgaagaa ggcaccctga aaggcgatgt tgcggatatc
     1261 tttccttatg cttcgtcact gtgggtcggt gatggggcga cgttcgttac tggcgcggat
     1321 caggatattc agtctatcga tgctacttcc agcggcacta tcgatatcag cgatggtacg
     1381 gttttgcgtc tgaccgggca ggatacttcc gtcgccctta atgcctcatt gtttaacggc
     1441 gatgggacgc tggtgaatgc taccgatggc gtgacgttga caggtgagct taataccaac
     1501 cttgaaactg acagcctgac ctatcttgcc gacgtgacgg ttaatggtga tctgaccaat
     1561 acgtccggtg cggttagcct gcaaaatggc gtcgctggcg atacgctaac ggtaaacggt
     1621 gattatactg gcggcggtac gctactgttc gacagcgaat taaacggcga tgactcggta
     1681 agcgatcaat tggtgatgaa cggtaatact gctggcaaca caactgtggt ggttaactcc
     1741 attacaggga ttggtgagcc gacatcgaca ggcattaaag tggttgattt cgcagctgat
     1801 cccacgcagt ttcaaaacaa tgcacagttc agtctggctg gcagtggcta cgtcaacatg
     1861 ggagcgtatg actacacgct agtggaagat aacaacgact ggtatctgcg atcgcaagaa
     1921 gtaacgccgc catcgccacc tgatccagac ccggacccaa cacccgatcc tgacccaaca
     1981 cccgatccaa tccccgctta ccagccggtg ctgaatgcca aagttggcgg ttatctcaat
     2041 aacctgcggg cggcaaatca ggcgtttatg atggagcgac gcgatcacgc tggtggcgat
     2101 ggtcagacgc tgaatttacg tgttatcggc ggacgttatc attacacggc ggcagggcaa
     2161 ctggctcagc aggaagacac ttctacggtg cagcttagcg gcggcttgtt tagcgggcgc
     2221 tggggcacgg atggcgagtg gatgcttggg gcggttggtg gctacagtga taatcagggc
     2281 gacagccgct cgaatatgac cggaactcgc gccgataacc agaaccacgg ttatgccgtt
     2341 gggctgacct caagctggta tcagcacggt aattagaagc agggggcctg gctggatagc
     2401 tggctgcaat acgcgtggtt taacaatgat gtttccgaac atgaagatgg cgtggatcgt
     2461 taccattcgt cggggattat cgcctcgctg gaagccgggt atcagtggtt accggggcgt
     2521 ggtgtggtga ttgaaccgca ggcgcaggtg atttatcagg acgtgcagca ggatgatttt
     2581 accgccgcta accatgcgcg cgtgtcacaa tcgcaggggg atgatattca gacgcggctg
     2641 ggtttacaca gcgaatggcg taccgcggtt ggtgtcacac caacattaga tctgaattat
     2701 tatcacgatc cccatgcgac ggaaattgaa gaagatggca gcactatcag tgacgatgcg
     2761 gtgaagcgac ggggtgaaat aaaagtggga gtcacgggca atatcagtca gcgagtgtcc
     2821 ctgcgcggca gcgtggcgtg gcagaaaggg agtgatgatt ttgcccagac ggcagggttt
     2881 ttgtcgatga cggtgaaatg gtaatcactg tctagtcggc acggttgccg gatgcggcgt
     2941 aaacgcctta tccggcctac ggggagcatt tgtaggcctg ataagacgcg gcaagcgtcg
     3001 catcaggcat tggctcggcc aaacaacaac ctcacttatt ctgcgtgtgc agcatatagt
     3061 tcacatccac gccggggccg agtttaaaag tattagtgag cgggttgtaa tgtagcccag
     3121 ttatatgtcg ctctttaagg cttgtctgat ctacccagcc aagcagttct gccggtttaa
     3181 taaacttctt cacatcatgc gtgcctttgg gcaccatgcg caaaatatat tccgcgccaa
     3241 ccaccgccat cagccatgac ttgccgttgc ggttaagcgt cgagaaaaag acatcgccgc
     3301 ctggtttcac cagttgcgca caggctctga ccactgactg cggatcgggg acgtgctcca
     3361 gcatctccat gcaggtcacc acatcatact gcccggcatg ttttgccgcg tgctcttcca
     3421 cggtttcctg cacataatcc acctgaatgc cgctttccag cgcgtgcagt tttgccacct
     3481 gcaatggctc aaagcccata tccagaccgg tcaccgtcgc gccttcgcgc gccatactct
     3541 cggccagaat gccgccgcca caaccgacat cgagcacctt tttgccaaat aaaccgccag
     3601 cacgctcggc aatatagccc agacgcagcg ggttaatgcg gtgcaacggt ttgaactcac
     3661 cttcaagatc ccaccagcgg gaggcgacgg cttcaaattt agcgatctct tcgtggtcta
     3721 cgttatggtt ttccggcgat ttttcggcat tcattggcac ttctactccg taattggcaa
     3781 gacaaacgag tatatcaggc attggatgtg aataaagcgt ataggtttac ctcaaactgc
     3841 gcggctgtgt tataatttgc gacctttgaa tccgggatac agtagaggga tagcggttag
     3901 atgagcgacc ttgcgagaga aattacaccg gtcaacattg aggaagagct gaagagctcc
     3961 tatctggatt atgcgatgtc ggtcattgtt ggccgtgcgc tgccagatgt ccgagatggc
     4021 ctgaagccgg tacaccgtcg cgtactttac gccatgaacg tactaggcaa tgactggaac
     4081 aaagcctata aaaaatctgc ccgtgtcgtt ggtgacgtaa tcggtaaata ccatccccat
     4141 ggtgactcgg cggtttatga cacgatcgtc cgtatggcgc agccattctc gctgcgttac
     4201 atgctggtag acggtcaggg taacttcggt tccatcgacg gcgactctgc ggcggcaatg
     4261 cgttatacgg aaatccgtct ggcgaaaatt gcccatgaac tgatggccga tctcgaaaaa
     4321 gagacggtcg atttcgttga taactatgac ggcacggaaa aaattcccga cgtcatgcca
     4381 accaaaattc ctaacctgct ggtgaacggt tcttccggta tcgccgtagg tatggcaacc
     4441 aacatcccgc cgcacaacct gacggaagtc atcaacggtt gtctggcgta tatcgatgat
     4501 gaagacatca gcattgaagg gctgatggaa cacatcccgg ggccggactt cccgacggcg
     4561 gcaatcatta acggtcgtcg cggtattgaa gaagcttacc gtaccggtcg cggcaaggtg
     4621 tatatccgcg ctcgcgcaga agtggaagtt gacgccaaaa ccggtcgtga aaccattatc
     4681 gtccacgaaa ttccgtatca ggtaaacaaa gcgcgcctga tcgagaagat tgcggaactg
     4741 gtaaaagaaa aacgcgtgga aggcatcagc gcgctgcgtg acgagtctga caaagacggt
     4801 atgcgcatcg tgattgaagt gaaacgcgat gcggtcggtg aagttgtgct caacaacctc
     4861 tactcccaga cccagttgca ggtttctttc ggtatcaaca tggtggcatt gcaccatggt
     4921 cagccgaaga tcatgaacct gaaagacatc atcgcggcgt ttgttcgtca ccgccgtgaa
     4981 gtggtgaccc gtcgtactat tttcgaactg cgtaaagctc gcgatcgtgc tcatatcctt
     5041 gaagcattag ccgtggcgct ggcgaacatc gacccgatca tcgaactgat ccgtcatgcg
     5101 ccgacgcctg cagaagcgaa aactgcgctg gttgctaatc cgtggcagct gggcaacgtt
     5161 gccgcgatgc tcgaacgtgc tggcgacgat gctgcgcgtc cggaatggct ggagccagag
     5221 ttcggcgtgc gtgatggtct gtactacctg accgaacagc aagctcaggc gattctggat
     5281 ctgcgtttgc agaaactgac cggccttgag cacgaaaaac tgctcgacga atacaaagag
     5341 ctgctggatc agatcgcgga actgttgcgt attcttggta gcgccgatcg tttgatggaa
     5401 gtgatccgtg aagagctgga gctggttcgt gaacagttcg gtgacaaacg tcgtactgaa
     5461 atcaccgcca acagcgcaga catcaacctg gaagatctga tcactcagga agatgtggta
     5521 gtgacgctct ctcaccaggg ctacgttaag tatcagccgc tttctgaata cgaagcgcag
     5581 cgtcgtggcg ggaaaggtaa atctgccgca cgtattaaag aagaagactt tatcgaccga
     5641 ctgctggtgg cgaacactca cgaccatatt ctgtgcttct ccagccgtgg tcgcgtctat
     5701 tcgatgaaag tttatcagtt gccggaagcc actcgtggcg cgcgcggtcg tccgatcgtc
     5761 aacctgctgc cgctggagca ggacgaacgt atcactgcga tcctgccagt gaccgagttt
     5821 gaagaaggcg tgaaagtctt catggcgacc gctaacggta ccgtgaagaa aactgtcctc
     5881 accgagttca accgtctgcg taccgccggt aaagtggcga tcaaactggt tgacggcgat
     5941 gagctgatcg gcgttgacct gaccagcggc gaagacgaag taatgctgtt ctccgctgaa
     6001 ggtaaagtgg tgcgctttaa agagtcttct gtccgtgcga tgggctgcaa caccaccggt
     6061 gttcgcggta ttcgcttagg tgaaggcgat aaagtcgtct ctctgatcgt gcctcgtggc
     6121 gatggcgcaa tcctcaccgc aacacaaaac ggttacggta aacgtaccgc agtggcggaa
     6181 tacccaacca agtcgcgtgc gacgaaaggg gttatctcca tcaaggttac cgaacgtaac
     6241 ggtttagttg ttggcgcggt acaggtagat gactgcgacc agatcatgat gatcaccgat
     6301 gccggtacgc tggtacgtac tcgcgtttca gaaatcagca tcgtgggccg taacacccag
     6361 ggcgtgatcc tcatccgtac tgcggaagat gaaaacgtag tgggtctgca acgtgttgct
     6421 gaaccggttg acgaggaaga tctcgatacc atcgacggca gtgccgcgga aggggacgat
     6481 gaaatcgctc cggaagtgga cgttgacgac gagccagaag aagaataatt ttacttcttc
     6541 atgccaaaag ggagctatct cccttgtttg aattgaaaag tccaggctgc aaagtctggg
     6601 cttttgtcgt attagggcac ggtaaagttt ggctgtgccc gtaaaaaatg gctggctata
     6661 cacaaggaat gtggcaatga gtggtgaaaa aaaggcgaaa ggctggcggt tctatggtct
     6721 tgtaggtttt ggcgcaatag tactgctttc cgctggcgtc tgggcgttgc aatatgctgg
     6781 cagtgggcca gaaaaaacgt tgtcgccgct ggtgatgcac aacaatctgc aaatcgatct
     6841 caatgagccg gacctctttc tcgacagcga ctctctgagc cagcttccca aagatctcct
     6901 caccattccg tttctccacg atgttctgag tgaagatttc gttttctatt atcagaatca
     6961 tgccgatcgt ctgggcattg aaggcagcat tcgtcgcatt gtctatgaac acgatctcac
     7021 gctgaaagat aaactctttt cgtcactctt agatca
//
LOCUS       DADMJB010000189         7018 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.192, whole genome shotgun sequence.
ACCESSION   DADMJB010000189 DADMJB010000000
VERSION     DADMJB010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7018
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.192"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..311)
                     /locus_tag="JN078_003667"
     CDS             complement(<1..311)
                     /locus_tag="JN078_003667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreA"
                     /protein_id="HAY9042721.1"
                     /translation="MLTKDLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGV
                     VFKTIGFFIANEVSPRFDHLVKEDTGFIGFKNMEQIAEHPLEENLAALRRLKEDYPDK
                     V"
     gene            complement(305..1543)
                     /locus_tag="JN078_003668"
     CDS             complement(305..1543)
                     /locus_tag="JN078_003668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HAY9042722.1"
                     /translation="MPQQNYLDELTPAFTPLLAIKEASRCLLCHDAPCSQACPAQTDP
                     GKFIRSIYFRNFKGAAETIRENNALGAVCARVCPTEKLCQSGCTRAGVDAPIDIGRLQ
                     RFVTDFEQQTGMEIYQPGTKTLGKVAIIGAGPAGLQASVTLTNQGYDVTIYEKEAQPG
                     GWLRNGIPQFRLPQSVLDAEIARIEKMGVTIKCNNEVGNTLTLEQLKAENRAVLVTVG
                     LSSGSGLPLFEHSDVEIAVDFLQRARQAQGDISIPQSALIIGGGDVTMDVASTLKVLG
                     CQAVTCVAREELDEFPASEKEFTSARELGVSIIDGFTPVAVEGNKVTFKHVRLSGELT
                     MAADKIILAVGQHARLDAFAELEPQRNTIKTQNYQTRDPQVFAAGDIVEGDKTMVYAV
                     KTGKEAAEAIHHYLEGACSC"
     gene            complement(1940..2179)
                     /locus_tag="JN078_003669"
     CDS             complement(1940..2179)
                     /locus_tag="JN078_003669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2542 family protein"
                     /protein_id="HAY9042723.1"
                     /translation="MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVY
                     VWRAKNPGLFFAYMVAYIGFGILSIGMIVYLIFYR"
     gene            complement(2182..2901)
                     /gene="sanA"
                     /locus_tag="JN078_003670"
     CDS             complement(2182..2901)
                     /gene="sanA"
                     /locus_tag="JN078_003670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane permeability protein SanA"
                     /protein_id="HAY9042724.1"
                     /translation="MLKRVFLSLLVLIGLLLLTVLGLDRWMSWKTAPYIYDELQDLPY
                     RQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTM
                     RKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHM
                     GIQAQCYAVPSPKDMLSVRIREFAARFGALADLYIFKREPRFLGPLVPIPAMHQVPED
                     AQGYPAVTPEQLLELQKKQGK"
     gene            complement(3051..3935)
                     /gene="cdd"
                     /locus_tag="JN078_003671"
     CDS             complement(3051..3935)
                     /gene="cdd"
                     /locus_tag="JN078_003671"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HAY9042725.1"
                     /translation="MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSA
                     TGLDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVH
                     AEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDY
                     LPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECK
                     DGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDAT
                     SATLKALGCHSIDRVLLA"
     gene            complement(4065..4760)
                     /locus_tag="JN078_003672"
     CDS             complement(4065..4760)
                     /locus_tag="JN078_003672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidB/LrgB family autolysis modulator"
                     /protein_id="HAY9042726.1"
                     /translation="MMANIWWSLPLTLIVFFAARKLAARYKFPLLNPLLVAMVVIIPF
                     LMLTGISYDSYFKGSEVLNDLLQPAVVALAYPLYEQLHQIRARWKSIITICFIGSVVA
                     MVTGTSVALLMGASPEIAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAV
                     FGHTLLNAMHIRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVLCGIITSLI
                     APFLFPIILAVMG"
     gene            complement(4757..5155)
                     /locus_tag="JN078_003673"
     CDS             complement(4757..5155)
                     /locus_tag="JN078_003673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HAY9042727.1"
                     /translation="MSKTLNIIWQYLRAFVLIYACLYAGIFIASLLPVTIPGSIIGML
                     ILFVLLALQILPAKWVNPGCYVLIRYMALLFVPIGVGVMQYFDLLRAQFGPVVVSCAV
                     STLVVFLVVSWSSQLVHGERKVVGQKGSEE"
     gene            5394..6344
                     /gene="dusC"
                     /locus_tag="JN078_003674"
                     /pseudo
     CDS             5394..6344
                     /gene="dusC"
                     /locus_tag="JN078_003674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001311941.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(16) synthase DusC"
     gene            complement(6732..6815)
                     /gene="yohP"
                     /locus_tag="JN078_003675"
     CDS             complement(6732..6815)
                     /gene="yohP"
                     /locus_tag="JN078_003675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YohP"
                     /protein_id="HAY9042728.1"
                     /translation="MKIILWAVLIIFLIGLLVVTGVFKMIF"
BASE COUNT         1827 a         1795 c         1733 g         1663 t
ORIGIN      
        1 aatactttgt ccgggtaatc ttctttcagc cgacgcaggg cggccagatt ctcctccagc
       61 ggatgctcgg caatctgctc catatttttg aagccgataa aaccggtatc ttctttcacc
      121 agatgatcaa aacgcggcga gacttcgttg gcgataaaaa agccgatcgt tttaaacacc
      181 acaccgcccc aacctgtgtc gtaggctttg gcacacatct catagcagtt gcctaccggc
      241 gaagaagaga ggcagaacgg gttgggaaac ttcacgccgc aaaaagtaat cgaaagatct
      301 ttcgttaaca tgagcaagct ccctctaaat agtgatgaat cgcctcggcg gcttctttcc
      361 cggttttcac ggcatagacc atggttttgt caccctcaac aatatcgcca gcagcaaaga
      421 cttgcgggtc gcgggtctgg taattttgtg ttttgatggt gttacgctgc ggctctaact
      481 ccgcaaaggc atctagtctg gcatgctgac cgacggcgag aataatttta tctgccgcca
      541 tcgtcagttc gcccgataac cgtacatgct taaacgtgac tttattgcct tccacggcta
      601 ctggcgtgaa tccatcgatg atcgaaacgc ccagctcccg ggcgctggta aactcttttt
      661 cgcttgccgg aaactcatct aactcttcac gcgctacgca agttaccgcc tgacagccga
      721 gaactttcag cgtgctggct acgtccatcg tgacatcacc gccgccgata attaatgcgc
      781 tttgtggaat gctgatatcg ccttgcgcct gtcgtgcacg ttgcaagaag tcgacggcaa
      841 tctcaacgtc actatgctca aacagcggta gcccggaacc gcttgataac cccacggtga
      901 ccagtaccgc gcggttttct gctttcagct gctcaagggt gagtgtgtta ccgacttcgt
      961 tgttgcactt aatggtcacg cccatttttt caatacgggc gatctctgca tccagtactg
     1021 attgcggtaa ccggaattgc ggaatgccgt tacgcaacca gccaccgggt tgtgcttctt
     1081 tctcatagat cgtgacgtca taaccctggt ttgtcagtgt cacactggcc tgcaatccgg
     1141 caggacctgc gccaataatc gcgactttgc cgagcgtttt agtaccgggc tgataaattt
     1201 ccatcccggt ttgttgttca aaatcagtaa caaaacgctg taagcggccg atatcaatgg
     1261 gagcatcaac accggcacgg gtacaaccgc tttggcataa tttctccgtc gggcacactc
     1321 tggcacaaac ggcaccgagg gcattatttt cgcgaattgt ctcggcagcg cctttaaaat
     1381 tacgaaagta gattgagcga ataaatttcc ccggatcggt ctgtgccggg caagcctgac
     1441 tacagggagc gtcgtgacat aataaacagc gagaggcttc tttaatcgcc agtaacggcg
     1501 taaaagccgg agtgagttca tccagataat tttgttgcgg catgtgatct tccttaatgc
     1561 tatgagtaat taaggcgaac gctaaatata ctcgtcatac ttcaagttgc atgtgctgcg
     1621 tctgcgggtt attcggccca tccatgggcc tcacccctta tggggccgct gcaggcagcg
     1681 ttcaaatccg ctccatgcgg atttgtcgct caccccagtc acttacttat gtaagctcct
     1741 ggggactcac tcacttgtcg ccttcctgca actcgaatta tttagagtat aaatattgcg
     1801 tgctgatatt aaggctatgc gcgtggggaa atttatactg tgaaaggatt cacaaatagc
     1861 tgcggttcag aatgttatat ccgcagctta ttgagtgaag taataattat tctcaataat
     1921 taacagaaaa gagaaaatat taacgataga aaataagata aacaatcatg ccgatagata
     1981 aaattccgaa gccgatatat gccaccatat aagcgaaaaa gagtccggga ttttttgctc
     2041 gccagacata caccggttcc ggtgcatttt taacccgttt atcaatcgcg cctgcgcgcc
     2101 agcctttcca tgcttcgcgg aaacaaaata tcggaataag gaaaaaaacg gcaacgacaa
     2161 aaaactgctg tacatccata actactttcc ttgtttcttt tgtaattcaa gtaactgttc
     2221 gggtgtgacg gcgggatacc cctgcgcatc ttccggcacc tggtgcatag ccggaatagg
     2281 gaccagcggc cctaaaaaac gcggttcacg tttaaaaata taaaggtcag ccagcgcacc
     2341 gaaacgggcg gcaaattcgc gaatacgtac tgacagcata tctttcggtg acggtacggc
     2401 ataacactga gcctgaatcc ccatatgcag cgcaataaat aatgcccgct cacagtggaa
     2461 acgttgggtg ataataatga aatcattagt atcgaaaact ttgcgtgtac gcacgatgga
     2521 atccagcgta cgaaagcctg cgtaatcgag aacaatatct gatgggtcga caccagcagc
     2581 gattaaatct ttgcgcatgg tcatcggctc attataactt tgcaatgcgt tatcgccgct
     2641 cagtaataga taatttacct taccgctgtt ataggcatta atcgctcctt gaatgcggta
     2701 gcgataatac tgattaatta cgccagtacg ataatatttt gctgttccga gcaccacacc
     2761 gacctggcgg taggggagat cctgcaattc gtcgtagata taaggcgcgg ttttccagct
     2821 catccagcga tcgaggccga gcacagtcaa caacagcaag ccgatcagga ctaacaggct
     2881 gaggaacacg cgctttaaca tgcaggagac tcgatctaag gaaaatttcc atcaggctac
     2941 tttacccgct ggttttgcgc aagaaacggc aaactgtttg ccgggaattt cgacaccagg
     3001 agagggctgg caagccggac aaggcgttca cgccgcatcc ggcaccaggc ttaagcgaga
     3061 agcactcggt cgatactgtg acagccgaga gctttcagcg ttgcggaggt ggcatcccac
     3121 tgaatcaacg gcgcatcggc tttttctgcc agaaccgcgc gctggatatc cgggtaatca
     3181 taacccttga gattcaacag aattaacgct ccctgcaacg gtggcagagt cgggttgaat
     3241 gcggcgtttt cagcgtagct gccactgaaa atacgaccgt ctttacattc cagcgcgaca
     3301 ccgcttggcg acttactgta aggcatgtgc gaacggtttg ccgctgcaat cgccgcctga
     3361 gaaagcgcat caccagtcag cgcatagccg tgatcctgct cgtccatcag cagcgtttta
     3421 atctccagat ctttcggccc aaaggcatcc ggcagatagt cacgcagcgc gtgtgcctcg
     3481 cggcccggca gatgaatacg cagatccaga ccgctgttca gttcattcat aaactgacgg
     3541 cagtgaccac aaggcgtgta gttaacggtg atggctgcaa gcgctttttc accactcaac
     3601 caggcgtggc tgatcgcgct ttgttcggca tgaacggttt gctgcattgt cgcaccaata
     3661 aattccatat tggcaccgaa ataccaggtt ccgctcacac cgcgcgcaat tgcgccaaca
     3721 ttaaaattcg acaatggcgt acgcgcacag gccgctgcca gcggaagtag tgcgaatgcc
     3781 agcgcgtctt cgtccagccc cgttgcgctc ttcagcgatg agacttgctc cccggtcaac
     3841 aaagcgggga agtacttgtc tgccagaata ggttccagtg cagattgcaa gttatccgca
     3901 agttgggcaa aagcggtttg aaaacgtgga tgcatggcgt tgcctcataa tcatgtaatg
     3961 ggataacagt ttacgaaccc gttatggctt tatatgtgat ctgaatctca ttaattatgc
     4021 aacgcgtgaa acttacatca aaaatgcgcg acgcatcgca aattttagcc cattactgcc
     4081 agaataatcg ggaaaaggaa cggtgcgatc agcgaagtaa ttatcccgca taacaccagc
     4141 gctagcgaac taaatgcacc ttcctgataa tccagctcgg cgcagcgcgc cgtaccgagg
     4201 gcgtgcgagg cagtccccat tgccagaccg cgcgcagctt tggtacgaat atgcatcgca
     4261 ttaagcaatg tatggccaaa taccgcgccg aggatgccga cgaaaatcac gcaaactgcg
     4321 ctgattgccg gaataccgcc aatactgccg ccaaccgcca ttgcaatagg cgtggtgact
     4381 gatttcggca ggattgacgc ggcgatttcc ggtgaagcgc ccatcaacaa tgccacggaa
     4441 gtccccgtca ccatcgcaac cacgctgccg ataaaacaga tggtgatgat cgatttccag
     4501 cgcgcgcgga tctggtgtag ctgctcatat aaaggatagg ccagcgcgac gaccgccggt
     4561 tgcagcagat cgtttagcac ttcgctacct ttaaagtagc tgtcgtaaga gatgccggtc
     4621 agcattaaaa aagggatgat caccaccatt gctaccagca acgggttaag caagggaaac
     4681 ttataccgtg ccgccagttt gcgggcggca aaaaagacga tcaatgtcag tggtaatgac
     4741 caccagatat tagccatcat tcttctgatc ctttctgacc tacgacttta cgttcaccgt
     4801 gcaccagttg cgaactccag ctcaccacca gaaaaaccac cagtgtactg acagcacagg
     4861 aaaccactac cgggccaaac tgtgcgcgga gcaaatcaaa atattgcatg acgcctacgc
     4921 caatcggcac aaacaatagc gccatatagc gaatcagtac gtagcacccc ggattgaccc
     4981 attttgccgg aagaatttgc aaggccagca ggacaaacag gatcagcatc ccgatgatgc
     5041 tgcccggaat ggttaccggt agcagggaag caatgaaaat gcctgcatac aggcaggcat
     5101 aaatcaggac gaaagcgcgt aaatattgcc agataatgtt cagtgtctta ctcataatca
     5161 acaccccaga tgagatgaat tcatcataca attaattcgt aaaacgtgct accgatcaca
     5221 ttaagaaatc agcgcttatt ttttcgctcc ccggcattac gcaatgcgca acgaactcag
     5281 gcatacatca agcatagaga gggattacag tttgcagcaa tccctctttg cagaccttta
     5341 atccgttgac cataggcgct aacatagcgc ctcatttttt tgcgggtgaa gatatgcgtg
     5401 tgttactggc tccgatggag ggtgtgcttg actctctggt gcgtgaattg ctgaccgaag
     5461 ttaacgacta cgatctgtgc atcaccgagt ttgtccgcgt ggtggatcaa ctgctgccgg
     5521 taaaagtttt tcatcgcatt tgccctgagc tacaaaacgc cagccggaca ccatccggta
     5581 cgctggtgcg cgtgcagttg ttgggtcagt tcccacaatg gctggcagag aatgccgccc
     5641 gtgcggtgga attaggttcc tggggcgtgg atctcaattg cggctgcccg tcgaaaacgg
     5701 tcaacggtag cggtggtggg gcgacgttac tcaaagatcc tgaactcatc tactagggtg
     5761 caaaagcgat gcgtgaagct gtaccggcgc atttgcccgt cagcgtgaaa gtgcgtctgg
     5821 gctgggacag cggtgagaag aaatttgaaa tcgccgatgc ggttcaacag gctggtgcta
     5881 cggagctggt ggtgcatgga cggacaaaag agcagggtta ccgcgcggag catattgact
     5941 ggcaggcgat tggcgagatt cgccagcggc tgaatattcc ggtgattgcc aacggtgaaa
     6001 tctgggactg gcagagtgcg caacaatgta tggcgatcag cggctgcgac gcagtgatga
     6061 ttggtcgcgg ggcgctcaat attcccaacc tgagccgggt ggtaaaatat aacgaaccgc
     6121 gaatgccgtg gccggaggtg gttgctttgc tgcaaaaata tacccgtctg gaaaagcagg
     6181 gcgataccgg gttatatcac gttgcgcgga ttaaacagtg gttgagttat ttgcgtaaag
     6241 aatacgatga agcaacggaa ttatttcagc atgttcgggt gttgaataat tcccctgata
     6301 ttgcaagggc tattcaggca attgatatcg ataagctgcg ataatagtgg aatcgcagtt
     6361 tatcagagac aatgaatcgc ttattcagct tcatcatctt gttgcgctcc tttcatgagc
     6421 taagccacat attgccactg gcgcaaggag cgcgcagggg gaggacaatc gcctcctccc
     6481 cctgcccccc cgggctctgg cgaacaaaat cgccgctgcg cggtaccttc agcttatccc
     6541 cttcggctac cgggtcgggc gcgaggtaac gtccttgtaa gacgcgccct cagcccacat
     6601 ccatgtgggc tgccccggcc ttcggggaac gcttcagcga ttttgacgcc accaacaccg
     6661 gagctgtttg caaatcaagt acacaaaata tctagttcct gacctgacaa cttatatgcc
     6721 atatctgatt tttaaaatat catcttaaat acgccagtca ccaccagtag cccaatcagg
     6781 aaaataatca atacagccca gagtataatt ttcattggcg ttcctttatt tgtgagtgtt
     6841 gaataagtat aggaaaaaac gaagcccttt gccgttatcc ataaacgatt aagataaatc
     6901 ggaagatatc attcacttag tctatatttt tctgggtatg tcgttttatt gctactgatg
     6961 tattgccacg cgaaactaaa aaatatatcg caacacacgg taatctccgc gcaccgtt
//
LOCUS       DADMJB010000190         7014 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.193, whole genome shotgun sequence.
ACCESSION   DADMJB010000190 DADMJB010000000
VERSION     DADMJB010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7014)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7014)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7014
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.193"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..247
                     /locus_tag="JN078_003676"
     CDS             <1..247
                     /locus_tag="JN078_003676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042729.1"
                     /translation="HARLFGFTAEDIMDFWQHKAPQKYSAFELAFEFGHRVIAELILN
                     TLNKMAESFGFTDNPRYIAEKNYMEALLKKASPHTVR"
     gene            complement(216..1940)
                     /gene="aceK"
                     /locus_tag="JN078_003677"
     CDS             complement(216..1940)
                     /gene="aceK"
                     /locus_tag="JN078_003677"
                     /EC_number="2.7.11.5"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional isocitrate dehydrogenase
                     kinase/phosphatase"
                     /protein_id="HAY9042730.1"
                     /translation="MPRGLELLIAQTILQGFDAQYGRFLEVTSGAQQRFEQADWHAVQ
                     LAMKNRIHLYDHHVGLVVEQLRCITNGQSTDAAFLLRVKEHYTRLLPDYPRFEIAESF
                     FNSVYCRLFDHRSLTPERLFIFSSQPERRFRTIPRPLAKDFHPDHGWESLLMRVISDL
                     PLRLRWQNKSRDIHYIIRHLTETLGTDNLAESHLQVANELFYRNKAAWLVGKLITPSG
                     TLPFLLPIHQTDDGELFIDTCLTTTAEASIVFGFARSYFMVYAALVEWLREILPGKTT
                     AELYMAIGCQKHAKTESYREYLVYLQGCNEQFIEAPGIRGMVMLVFTLPGFDRVFKVI
                     KDKFAPQKEMSAAHVRACYQLVKEHDRVGRMADTQEFENFVLEKRHISPALMELLLQE
                     AAEKITDLGEQIVIRHLYIERRMVPLNIWLEQVEGQQLRDAIEEYGNAIRQLAAANIF
                     PGDMLFKNFGVTRHGRVVFYDYDEICYMTEVNFRDIPPPRYPEDELASEPWYSVSPGD
                     VFPEEFRHWLCADPRIGPLFEEMHADLFRADYWRALQNRIREGHVEDVYAYRRRQRFS
                     VRYGEMLF"
     gene            complement(2221..3518)
                     /gene="aceA"
                     /locus_tag="JN078_003678"
                     /pseudo
     CDS             complement(2221..3518)
                     /gene="aceA"
                     /locus_tag="JN078_003678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418439.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase"
     gene            complement(3548..5149)
                     /gene="aceB"
                     /locus_tag="JN078_003679"
     CDS             complement(3548..5149)
                     /gene="aceB"
                     /locus_tag="JN078_003679"
                     /EC_number="2.3.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate synthase A"
                     /protein_id="HAY9042731.1"
                     /translation="MTEQATTTDELAFTRPYGEQEKQILTAEAVEFLTELVTHFTPQR
                     NKLLAARIQQQQDIDNGTLPDFISETASICDADWKIRGIPADLEDRRVEITGPVERKM
                     VINALNANVKVFMADFEDSLAPDWNKVIDGQINLRDAVNGTISYTNEAGKIYQLKPNP
                     AVLICRVRGLHLPEKHVTWRGEAIPGSLFDFALYFFHNYQALLAKGSGPYFYLPKTQS
                     WQEAAWWSEVFSYAEDRFNLPRGTIKATLLIETLPAVFQMDEILHALRDHIVGLNCGR
                     WDYIFSYIKTLKNYPDRVLPDRQAVTMDKPFLNAYSRLLIKTCHKRGAFAMGGMAAFI
                     PSKDEEHNNQVLNKVKADKSLEANNGHDGTWIAHPGLADTAMAVFNDILGSRKNQLEV
                     MREQDAPITADQLLAPCDGERTEEGMRANIRVAVQYIEAWISGNGCVPIYGLMEDAAT
                     AEISRTSIWQWIHHQKMLSNGKPVTKALFRQMLGEEMKVIASELGEERFSQGRFGDAA
                     RLMEQITTSDELIDFLTLPGYCLLA"
     gene            complement(5418..6347)
                     /gene="metA"
                     /locus_tag="JN078_003680"
     CDS             complement(5418..6347)
                     /gene="metA"
                     /locus_tag="JN078_003680"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HAY9042732.1"
                     /translation="MPIRVPDELPAVNFLREENVFVMTTSRASGQEIRPLKVLILNLM
                     PKKIETENQFLRLLSNSPLQVDIQLLRIDSRESRNTPAEHLNNFYCNFEDIQEQNFDG
                     LIVTGAPLGLVEFNDVAYWPQIKQVLEWSKDHVTSTLFVCWAVQAALNILYGIPKQTR
                     TDKLSGVYEHHILHPHALLTRGFDDSFLAPHSRYADFPAALIRDYTDLEILAETEEGD
                     AYLFASKDKRIAFVTGHPEYDAQTLAQEYFRDVEAGLDPEVPYNYFPHNDPQNTPRAS
                     WRSHGNLLFTNWLNYYVYQITPYDLRHMNPTLD"
     gene            6504..6951
                     /locus_tag="JN078_003681"
                     /pseudo
     CDS             6504..6951
                     /locus_tag="JN078_003681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312957.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
BASE COUNT         1682 a         1803 c         1820 g         1709 t
ORIGIN      
        1 ccatgcacgc ctgtttggat ttaccgctga agatattatg gatttttggc aacacaaagc
       61 gccacaaaaa tactctgcct ttgagttggc ttttgaattt ggtcaccggg ttattgctga
      121 attaatcctt aatacattaa ataagatggc tgaaagcttt ggctttacgg ataaccctcg
      181 atacattgcg gagaaaaatt atatggaagc tttactcaaa aaagcatctc cccataccgt
      241 acgctaaatc tttgcctgcg ccgatacgca taaacatctt ccacatgccc ttcacgtatg
      301 cggttttgta gtgcgcgcca gtaatcagcg cggaacaggt cggcgtgcat ctcttcaaac
      361 agcggaccaa tacgcgggtc ggcgcatagc cagtggcgaa actcttccgg gaaaacatcg
      421 cccggcgaga cgctgtacca cggttcgctg gcaagttcgt cttccggata gcgcggcggc
      481 gggatgtcgc ggaaattcac ttccgtcatg tagcaaattt catcgtaatc ataaaaaacc
      541 acacgcccgt gacgggtgac accgaagttt ttaaacagca tgtcgccagg aaaaatgtta
      601 gcagcggcaa gctggcgaat agcgttaccg tattcttcaa tggcgtcgcg caactgctga
      661 ccttccactt gttccagcca gatattgagc ggcaccatcc gccgctcgat atagagatgg
      721 cgaattacaa tctgctcacc aagatcggtg attttttccg ctgcttcctg gagcagtaat
      781 tccattaatg ccggggaaat atgccgcttc tccagcacaa agttttcaaa ctcctgggtg
      841 tccgccattc ggcccacacg gtcgtgctct ttcaccagtt gatagcaggc acgaacgtga
      901 gcggcagaca tctctttctg cggcgcgaac ttgtctttga tgactttgaa tacccgatca
      961 aagcccggca gcgtaaacac caacatcacc attccacgaa tacccggcgc ttcaatgaac
     1021 tgctcattac agccctgtag ataaacgaga tattcgcggt agctttcggt tttggcgtgc
     1081 ttctggcagc cgatagccat atacaattca gcagtggttt tacctggcag aatttcccgt
     1141 agccactcga ccagcgctgc ataaaccata aaataagaac gcgcaaagcc aaaaacaatg
     1201 ctcgcttcgg cggtcgtcgt caggcaggta tcaataaata actcgccgtc gtccgtctgg
     1261 tggatcggca gtaagaaggg caacgtgccg gaaggcgtga tcagtttgcc caccagccag
     1321 gcggctttat tgcggtaaaa cagttcgttc gccacctgta aatgactttc cgcgaggttg
     1381 tctgtcccca gcgtttccgt cagatggcga atgatgtaat gaatgtcacg gcttttattc
     1441 tgccagcgca ggcgcagcgg caggtcgctg ataacgcgca tcagtagaga ttcccagccg
     1501 tgatcggggt gaaagtcttt cgccagcggg cggggaatgg tacgaaagcg gcgctctggc
     1561 tgagagctaa agataaaaag ccgctcggga gtaagcgagc ggtggtcaaa taaccgacag
     1621 tacacggagt taaaaaagct ctccgcaatc tcgaagcgcg ggtaatccgg caacagccgc
     1681 gtgtaatgct ctttaacgcg cagtaaaaat gccgcgtccg tactttggcc gttagtaatg
     1741 cagcgcagtt gctccacgac cagaccaacg tgatgatcgt aaagatggat acggtttttc
     1801 atcgccagct ggacagcatg ccagtcggcc tgttcgaaac gctgctgcgc cccggaagtc
     1861 acttcgagga atcgaccata ctgagcgtcg aagccttgca aaatggtttg agcaatcagt
     1921 aattccaggc cacgcggcat ttagcgccct catcaggagc agagaattgc cggatgcggc
     1981 gtaaacgcct tatccagcct acgttcggca acggttgtag gcatgataag acgcgcaagc
     2041 gtcgcatcag gcatcgtgca ccgattgccg gatgcggcgt aaatgcctta tccggcctac
     2101 gttcggcaac ggctgtaggc atgataagac gcgcaagcgt cgcatcaggc atcgtgcacc
     2161 gattgccgga tgcggcgtga acgccttatc cggcctacag tcagcaacgg ttgttgttgc
     2221 ttagaactgc gattcttcag tggagccggt cagcgcggtg actgaagacg tgccgccctg
     2281 aataatagtc gtcactttat cgaagtaacc tgtacccact tcctgctggt gagatacgaa
     2341 ggtatagcca tctttcgcgg cggcaaattc cggctgctgc actttctcaa cgtagtgctt
     2401 cataccctcg ccctggtcat aggcgtttgc caggtcaaac atgttgaacc acatgctgtg
     2461 gatacctgcc agggtgatga actggaactt gtagcccata tccgacagct gctgctggaa
     2521 gctggcaata gttttgtcgt cgaggttttt ctgccagttg aacgacggcg agcagttata
     2581 agccagcagt ttgcccggat atttcgcgtg gatagcttgt gcaaagcgac gcgccagttc
     2641 cagatccggc gtggaggttt cacaccagac caggtcagca tatggcgcat acgccaggcc
     2701 acggctgatc gcttgctcaa tgcccgcatg agtacggaag aagccttcac tggtacgctc
     2761 gccggtaata aattcgctgt catacgggtc gcaatcggag gtgatcagat ccgcggcatc
     2821 ggtacgagca accagtaggg ttggaacgcc cgtcacgtca gctgccagac gcgccgcgac
     2881 cagtttctga atagcttctt gagttggcac taaaactttg ccgcccatgt gaccgcattt
     2941 cttcactgac gccagctgat cttcgaagtg aactgccgct gcaccggctt caatcatcgc
     3001 tttcatcagt tcaaaggcat tcaggacacc gccaaaaccg gcttccgcat cggcaacgat
     3061 cggcaggaag taatcgacat agcgcggatc gcccggctca atgcccgcgg accattggat
     3121 ctgatccgca cggcggaaag tattgttgat ccgctccacc acagctggca ccgagtttgc
     3181 cggatagagc gactgatccg gatacatgct ggccgccagg ttagcgtccg ccgctacctg
     3241 ccatcccgac agatagactg cttcaatacc cgctttcgcc tgttgcagcg cctgaccgcc
     3301 agtcagtgca ccgaggctgt tgatgtagct tttttcgact cgccatgcag cagacgccac
     3361 attctcgccg cgcccagttg cgccagggtg cattcaggat tgactgaatc gcgtaatttc
     3421 accacatctt ccgcgctgta tgggcgagta atgccttccc aacgcggttg agtccactct
     3481 ttctgtaatt cttcaatttg ttgtgtacgg gttttcatgt gcagatgctc catagttatg
     3541 tggtggttta cgctaacagg cagtagcctg gcagggtcag gaaatcaatt aactcatcgg
     3601 aagtggtgat ctgttccatc aagcgtgcgg catcgccaaa acgcccctgg gagaaacgtt
     3661 cttcgcccag ttcgctggca atgactttca tctcttcgcc cagcatctgg cggaacaagg
     3721 ctttagttac cggtttgcca ttgctcaaca ttttttgatg atggatccac tgccagattg
     3781 aggtacggga aatttcagcc gtcgccgcat cttccatcag gccataaatc ggcacacagc
     3841 cgttgccaga gatccacgct tcgatgtact gcacggctac gcgaatattt gcgcgcatac
     3901 cttcttcggt gcgttcaccg tcacaaggtg ccagtagctg atcggcagta atcggcgcgt
     3961 cttgttcgcg catcacttca agctgatttt tacgggagcc gagaatgtcg ttgaataccg
     4021 ccattgccgt atccgcaagg cctgggtgag cgatccatgt gccatcgtga ccgttattgg
     4081 cttccagcga tttatccgct tttactttgt tgagcacctg gttattgtgc tcttcatctt
     4141 tgctcggaat aaacgccgcc atgccgccca tcgcaaaagc accgcgttta tggcaggttt
     4201 taatcaacag gcgtgagtaa gcattcagga atggtttatc catcgtcact gcctgtctgt
     4261 ctggcaggac gcgatcggga tagtttttca acgttttgat atagctgaag atgtaatccc
     4321 aacgaccgca gttcagacca acaatatggt cacgcagcgc gtgaaggatt tcatccatct
     4381 ggaacacggc gggcagcgtt tcaatcagca acgtcgcctt gatggtgccg cgcggcagat
     4441 taaagcgatc ttctgcatag ctgaagactt cgctccacca ggccgcttcc tgccaggact
     4501 gggttttcgg cagatagaaa tagggaccac tgccctttgc caacagagcc tgatagttgt
     4561 ggaagaaata gagcgcaaaa tcaaacaggc tgccggggat tgcctcacca cgccaggtga
     4621 catgtttttc cggcaagtgc agaccgcgta cccgacaaat caaaaccgct ggattgggct
     4681 tgagctggta aattttgcct gcttcattgg tatagctgat ggtaccgtta actgcatcac
     4741 gcaggttaat ttgcccgtcg atcactttgt tccagtccgg ggccagtgaa tcttcgaaat
     4801 cggccataaa gactttcaca ttggcgttga gcgcgttgat caccatcttg cgctctaccg
     4861 ggccagttat ctctacgcgg cggtcttcta agtccgcagg aatcccgcga attttccaat
     4921 cagcatcgca aatggaagct gtttccgaaa taaaatcagg caacgttccg ttatcaatat
     4981 cttgctgctg ctgaatgcgc gctgccagaa gtttatttcg ttgtggcgta aaatgcgtca
     5041 ccagctcagt cagaaattct accgcttcgg cagtaagaat ttgcttctcc tgctcgccat
     5101 acggccttgt gaaagccagt tcatcggttg ttgttgcctg ttcagtcatc gtgcagctcc
     5161 tcgtcatgga tccgaaaact tccccactgt gaacgaagga tcgttgtgcg cttttcgttc
     5221 agcacaacta agactactca tttaaaatgc aaaatcaaaa acaatttcca ttttaattga
     5281 aaatgcttga taacttattg ataacaatgt gaataaaatt tattcacctc ctgaggtgcg
     5341 tttcggaaat aaaaaaggca cccgaaggtg cctgaggtaa ggtgctgaat cgcttaacga
     5401 tcgactatca cagaagatta atccagcgtt ggattcatgt gccgtagatc gtatggcgtg
     5461 atctgataga cgtaatagtt gagccagttg gtaaacagca aattaccgtg actacgccag
     5521 ctcgctcgcg gtgtattttg cggatcattg tgcgggaaat agttatacgg tacttccggg
     5581 tctagtccgg cttccacatc gcggaaatat tcctgcgcca gcgtttgcgc atcatattcg
     5641 ggatggcccg tcacaaaggc aatgcgctta tctttgctgg caaacagata tgcatcccct
     5701 tcttccgtct ctgccagaat ttccagatcg gtgtaatcac gaatcaacgc tgccggaaag
     5761 tcagcatagc gcgaatgtgg tgccaggaat gaatcatcaa agccacgcgt cagaagcgca
     5821 tgaggatgga gaatatgatg ctcgtaaacg ccagagagtt tgtcggtgcg agtttgctta
     5881 ggaatgccgt agaggatatt gagcgcggcc tgtaccgccc agcagacaaa cagcgtcgag
     5941 gtgacgtgat ctttcgacca ctccagcacc tgtttgatct gcggccagta agcgacatca
     6001 ttaaactcca ccaggcccag cggcgcaccg gttacaatca gaccgtcaaa gttctgttcc
     6061 tgaatatctt caaagttaca gtagaagttg ttcagatgct ctgcgggcgt gttgcgcgat
     6121 tcacgggaat cgatgcgcaa cagctgaata tcgacctgca aaggtgagtt tgaaagcagg
     6181 cgcagaaact gattttcagt ttcaatcttc ttcggcatca ggttaaggat cagaacctta
     6241 agtggacgaa tttcctgacc agacgcacga gaagttgtca tcacaaagac gttttcttca
     6301 cgcaagaaat tgacggcggg tagctcgtcc ggcacacgaa tcggcataac ctgattacct
     6361 cactacatac acttatacgt ttagacatcc agatagctga agataaccag aaaatttgcc
     6421 aatgtcgagc ctgcatgttg aaggtgagaa agtttcaagg aaaagactac gttagaatat
     6481 aagaatgact aaaaggagag aaaatggtta ttagtattcg ccgctcacgg catgaggaag
     6541 gggaggaact cgttgcgatt tggtgtcgat ctgtcgatgc cacacacgat tttttatcag
     6601 cagagtatcg ggccgagctg gaggtgctag ctagttcgtt ccttcctgcc ggaagcgccg
     6661 ttgtggatcg cggttaatga acgggatcag ccggttgggt ttatgttgtt aagtgggcag
     6721 catatggatg cgctgtttat cgatcctgat gtgtgcggct gcggcgtggg tcggatgctg
     6781 gtggagcatg cgctctcgat ggcaccggaa ctgacaacca acgttaatga gcaaaatgag
     6841 caggcggttg ggttctataa gaaggtgggt tttaaggtta cgggacgctc tgaggtggac
     6901 gatttgggga aaccgtatcc gttgctgaat ctggcgtatg tgggggaata agccgcccct
     6961 gccgtgcctg cccaggctgg agaagacgcg ccagcgtcgc acccggcatt tttt
//
LOCUS       DADMJB010000191         6996 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.194, whole genome shotgun sequence.
ACCESSION   DADMJB010000191 DADMJB010000000
VERSION     DADMJB010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6996)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6996)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6996
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.194"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..374
                     /locus_tag="JN078_003682"
     CDS             <1..374
                     /locus_tag="JN078_003682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001743492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY9042733.1"
                     /translation="RPNFPYEFKIALVEQSLQPGACVAQIARENGINDNLLFNWRHQY
                     RKGGLLPSGKNMPALLPVTLTPEPDNKIPAPAQEPEQINTPSDSLCCELVLPAGTLRL
                     KGKLTPALLQILIREIKGSSH"
     gene            374..721
                     /gene="tnpB"
                     /locus_tag="JN078_003683"
     CDS             374..721
                     /gene="tnpB"
                     /locus_tag="JN078_003683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000624623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HAY9042734.1"
                     /translation="MISFPAGSRIWLVAGITDMRNGFNGLASKVQNVLKDDPFSGHLF
                     IFRGRRGDQIKVLWADSDGLCLFTRRLERGRFVWPVTRDGKVHLTPAQLSMLLEGIDW
                     KHPKRTERAGIRI"
     gene            741..1895
                     /locus_tag="JN078_003684"
                     /pseudo
     CDS             741..1895
                     /locus_tag="JN078_003684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
     gene            1899..2058
                     /locus_tag="JN078_003685"
                     /pseudo
     CDS             1899..2058
                     /locus_tag="JN078_003685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            2647..2945
                     /locus_tag="JN078_003686"
                     /pseudo
     CDS             2647..2945
                     /locus_tag="JN078_003686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343747.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            3027..3164
                     /locus_tag="JN078_003687"
                     /pseudo
     CDS             3027..3164
                     /locus_tag="JN078_003687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011787828.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
     gene            3534..4211
                     /gene="ospD1"
                     /locus_tag="JN078_003688"
     CDS             3534..4211
                     /gene="ospD1"
                     /locus_tag="JN078_003688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspD1"
                     /protein_id="HAY9042735.1"
                     /translation="MSINNYGLHPANNKNMHLIIGSNTANENKGMKRNIINVTNTAIS
                     HAINEEKSGGGYSGVSFRKLAKIQSISIPTKNNKEYNRHNLFSLIWHGNADAARKYGE
                     SLLAAEIPKEEKLEVLAARNNAGESALFIALQEGHSAAIQAYGDFIKTFDLSPKETIK
                     LLDVRDNEGLPGLFLAAGKGNIEAMMAYINICHHSGIKLTEIADRLNNNEQDMFNIIS
                     DKIQELF"
     gene            4535..4645
                     /locus_tag="JN078_003689"
                     /pseudo
     CDS             4535..4645
                     /locus_tag="JN078_003689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            4723..5037
                     /locus_tag="JN078_003690"
     CDS             4723..5037
                     /locus_tag="JN078_003690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042736.1"
                     /translation="MLQRQRGKVGFAQLPVDFVAIEPDSAQGVGKRANLTNRCFIIRI
                     NDSFKKRQGFIEFISNSGSGHTVTVYTKRRFQRGVFMNSLNTNVVKPVMYRLRSSADA
                     RP"
     gene            5319..5885
                     /locus_tag="JN078_003691"
     CDS             5319..5885
                     /locus_tag="JN078_003691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858157.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042737.1"
                     /translation="MLGTSFNNFGISLSHKRYFSGKVDEIIRCTMGKRIVKISSTKIN
                     TSILSSVSEQIGENITDWKNDEKKVYVSRVVNQCIDKFCAEHSRKIGDNLRKQIFKQV
                     EKDYHISLDINAAQSSINHLVSGSSYFKKKMDELCEGMNRSVKNDTTSNVANLISDQF
                     FEKNVQYIDLKKLRGNMSDYITNLESPF"
     gene            complement(6090..6206)
                     /locus_tag="JN078_003692"
                     /pseudo
     CDS             complement(6090..6206)
                     /locus_tag="JN078_003692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004989794.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            6412..6966
                     /locus_tag="JN078_003693"
                     /pseudo
     CDS             6412..6966
                     /locus_tag="JN078_003693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3-like element IS3H family transposase"
BASE COUNT         2050 a         1517 c         1643 g         1786 t
ORIGIN      
        1 ggcggcctaa ttttccttat gaatttaaaa tcgccttagt ggagcagtca ctgcagcccg
       61 gagcctgtgt ggcgcagatc gcccgtgaaa acggaatcaa cgataacctg ctcttcaact
      121 ggcgccatca ataccggaaa ggtggcctgc tgccttccgg aaaaaatatg cctgcactgc
      181 ttcccgtgac gttaacgccg gagccggata ataaaatccc ggctccggca caggaaccag
      241 agcagataaa tacaccgtcc gacagtctgt gctgtgagct ggttctgccg gccggaactc
      301 tcaggcttaa aggtaaactg acgccggcgt tattacagat acttatccgc gaaataaaag
      361 ggagcagcca ctgatgatat ctttccctgc aggttcgcgt atctggctgg ttgcaggtat
      421 caccgatatg cgaaatggct ttaacggcct ggcctcaaaa gttcagaacg tcctgaagga
      481 tgacccgttc tccgggcatc tgttcatctt ccgcggacgc cggggtgacc agataaaagt
      541 gttgtgggct gacagtgacg gactgtgcct ctttaccaga cgcctggagc ggggccgctt
      601 cgtctggccg gtcacccgtg acggcaaggt gcaccttact ccggcccagt tatccatgct
      661 tcttgagggc atcgactgga aacacccgaa acgaacggaa cgcgctggca tccgcatata
      721 acccgttgta aagtgaggat atggacacct cacttgctca tgagaatgcc cgcctgcggg
      781 cactgttgca gacgcaacag gacaccatcc gccagatggc gaaatacaac cgcctgctct
      841 cacagcgggt ggcggcttat gcttccgaaa tcaaccggct gaaggcgctg gttgcgaaac
      901 tgcagcgcat gcagttcggt taaagctcag aaaaacttcg cgcaaaaacc gaacggcaga
      961 tactggaagc acaggagcga atcagcgcac ttcaggaaga aatggcggaa acgctgggtg
     1021 agcaatatga cccggtactg ccatctcccc tgcgccagtc ttcagcccgt aaaccgttac
     1081 ctgcctcact tccccgtgaa acccgggtca tccgtccgga agaggaatgc tgcccggcct
     1141 gtggtggcga actcagttct ctgggatgtg atgtgtcaga gcagctggag cttatcagca
     1201 gcgcctttaa ggttatcgaa acacaacgtc cgaaactggc ctgttgccgg tgtgaccata
     1261 tcgtgcaggc accggtgcct tcaaaaccca ttgcacgcag ttatgccgga gcggggcttc
     1321 tggcccatgt tgtcgctgga aaatatgcag gctatctgcc gttataccgc cagtcagaaa
     1381 tataacgtcg tcagggcgtg gagctgagcc gtgccacact gggtcgctgg accggtgccg
     1441 ttgctgaact gctggagccg ctgtatgacg tcctgcgcca gtatgtgctg atgcccggta
     1501 aagttcatgc ggatgatatc cccgttccgg tccaggagcc gggcagtggt aaaacaagaa
     1561 ctgcccggct gtgggtctat gtccgtgatg accgtaacgc cggttcggaa atgcctccgg
     1621 cggtctggtt cgcgtactca ccggaccgga aaggtatcca tccacagaat catctggccg
     1681 gttacagcgg agtgcttcag gccgatgctt acggtggtta ccgggcgttg tacgaatccg
     1741 gcagaataac ggaagccctg ctgcgtatcg gtgaactgta tgccatcgag gcagaagtcc
     1801 ggggatgttc agcagaacag cgtctggcgg caagaaaagc cagagccgcg ccactgatgc
     1861 agtcactgta tgactggata cagcaacaga tgaaaattca ttcgctgaaa atggaatgtc
     1921 tccacggaga acactattat ccatcgggaa atagtgcggg caacagtgtt tagttatatc
     1981 gagtgcgatt acaatcgctg gcgacggcac cgttggtgtg gtggtctcag tccggaacaa
     2041 tttgaaaacc agagcctcac ttacgactgt gtccatatta tgtgggtagg atcaataaag
     2101 acgttttata tgtgtctgct tgcagccaga aaatttatac cctgcaggta tcataaacat
     2161 gcttgacaac ttaattaggg ccccctcttc cttttatggt gtaattgttt gattgaatac
     2221 ttccggggat ttcagtatga aatgaagtat atttaatata ctttacaaaa agtttgtatt
     2281 agtggaataa gaacaatagt ttatccaaac tgccaagccc ctttattata agtaagatct
     2341 ggcactggaa tattctcaaa aggactaaca tcatcaccac gaccttcaac caaccataaa
     2401 aaacaatact attttaggtg atgtattaaa ttagtagaat atttattctt ctataaaagc
     2461 actaccccaa gaggttaatc aggtcatcca tgattattta tcatatacta actatgtggg
     2521 atttcaacgt gaaaacttat tttcactata atcttcagga ttcgaagatc ataggagcct
     2581 gtacataagt ttgtataatt ctctgatgtt gaactattta atttgatatc aaatgaaggt
     2641 gaatttatga atgaaaaaca gttgacatct aataagttgc gggctttagc taatgaacta
     2701 gccaaaagtc tcaaaaatcc tgaagatctc agtcagtttg attggatgct gaaaatgaaa
     2761 ccgtactcaa tgctaatatg actcatcatc ttgggtgcga gaaaaatcag cttagatctg
     2821 gcagcaattc ccgcaatggt tgcttaacga agattatcac tactggagat gaacctctgg
     2881 aaatccgtac tctgcgtgat cgtaatggca ctttcgaacc gcaacagctg aagaaaaacc
     2941 agccctagat tactaaatct gtcgggcgat ggattaactg gttcaggctg tctggtgctg
     3001 aaggcctgaa gtcactgctg tcagtgatgt ggccggctct tcatgagaca ataacccgta
     3061 atcatcagtg ccgttcaata tggccactgt tgaaaaaagt tcgtcacttt atggagacgg
     3121 ttagcccact tcccggagaa aaacatagtc tggccaaagt gtagcggtat taggctcaca
     3181 tatttagatg tagataagcc ggagcaggca gttaaatcta ggcagcatca cagaaatgga
     3241 caacgcccct taaggactgg cgtatggcaa tgagctgctt tattatcaag tttggtgatc
     3301 gccttgacgg tcacttctga gtgaaggcgc ttgcacagaa tggtaaacgg actcgattat
     3361 tgaatcttag ggataagata tatctacgat atgtcaatat acgaaatcga aagaatttat
     3421 tggtgaatat agccattcaa tgtggcaatg gtttttttag attagcaata gactaatatc
     3481 tattacatta caaaaatagg ttattgtttt tttagcaaaa aggatgaaca aaaatgtcaa
     3541 taaataacta tggattacat ccagcaaaca acaaaaatat gcacctaata ataggcagca
     3601 atactgctaa tgaaaataaa ggaatgaaac gtaatatcat taacgtgaca aataccgcta
     3661 tatcccacgc catcaatgaa gaaaaatcag gggggggata tagtggtgtt tctttcagaa
     3721 aattggccaa aatacagagc atatccattc cgacaaagaa taataaggag tataaccgcc
     3781 ataatttgtt ttcattgatt tggcatggaa atgctgatgc agcgcgtaaa tacggtgaat
     3841 cgctgttggc agccgaaata cccaaagagg aaaaactaga agttcttgca gcacgaaata
     3901 atgctgggga atctgctttg ttcatagctc ttcaagaagg tcattccgct gcgattcaag
     3961 cttatggaga ttttattaaa acttttgatt tatcaccaaa agaaacgatt aaactattgg
     4021 atgtaagaga taatgagggg ttaccaggat tatttctggc cgcagggaaa gggaatatcg
     4081 aggctatgat ggcatatata aatatatgcc atcatagtgg gataaaactt acagaaatag
     4141 cagacagact taacaataat gaacaagaca tgtttaatat tatttctgac aaaatacaag
     4201 agttgtttta agtgtgctaa atagctgcaa agaattgcac ttagaaggag ctctccccga
     4261 attgtgtgat ctgcttaatt tctaaaaaga aacaaacagt taactagact gagcgatact
     4321 acccatagaa ccagtttccc atgacgaacg acactggacg caaaaacaat cataaaaaac
     4381 acaataaatg taatgaacac atcccaccct attaagtaaa gtgcactgtg atagaggaag
     4441 ggaaatacag gaaggtgtgg agccttgcag atttctggca tcatagtgcc caatacggaa
     4501 tgcataaagc cccctcagac tggagactcc acaaatgaaa tatacagtgt ttaattatat
     4561 caagtgcgat tacaatcgct gacgacggca cagttggtgt ggaggtctca gtcctgaaca
     4621 atttgaaaac cagaacctca cttaagcctg tgttcatatt acgtgggtag gatcatactt
     4681 ttatagaagc tgtcagtggc tacgtcccag ctaaatcact tcatgctcca gcgccagaga
     4741 ggcaaggttg ggtttgctca gctgccggtt gattttgttg cgattgaacc ggacagcgcc
     4801 cagggtgtcg gcaaaagagc gaatctcacc aatcgttgtt tcattatccg cattaacgat
     4861 agcttcaaga aacgccaagg ttttatcgaa ttcatcagca acagtggctc cgggcatacc
     4921 gtgaccgttt atacaaaaag gcgttttcag cgtggagttt tcatgaatag cctcaacacg
     4981 aatgtcgtga agccagtgat gtatcggcta cgatcctcag ctgatgccag accataggac
     5041 tgacactacg aacagcaatt ttaatgacgt aaatcttcat aactacaact aacagggcat
     5101 cattatgaat gatgccggtt attttaccgc tgttggtccc ttcatttagg gactgcccca
     5161 agttttttca tactctcttt ctcagagagt ttagtctctg ggattccaga cggtccatca
     5221 ttgagccaag ggagtaaaga actcaaagca tttacagaat tgtttgaatc agctaaaata
     5281 atgacaatgt tactatttta catgacaaag tgattataat gcttggaaca tcttttaata
     5341 attttggaat cagtttatct cacaaaagat atttttcagg aaaggttgat gagattatcc
     5401 gctgtacaat ggggaaaagg atagtaaaaa tatcatcaac caaaataaat actagtattt
     5461 tgagctctgt ttcagaacaa atcggtgaaa atattacaga ttggaaaaat gatgaaaaaa
     5521 aagtctacgt atcccgggtg gtaaaccaat gtattgataa gttttgtgca gaacacagcc
     5581 gaaaaatcgg cgataatctc cgtaaacaga tatttaaaca ggttgagaaa gattatcaca
     5641 tttctctaga catcaatgct gcacaaagtt ccataaatca tcttgtatca ggaagcagtt
     5701 atttcaaaaa gaaaatggac gaactttgtg aagggatgaa tagaagcgtt aaaaatgata
     5761 caacaagcaa tgttgcaaat cttatttccg atcagttttt tgagaaaaat gtgcaatata
     5821 ttgatctaaa gaaattacgt gggaatatga gtgattatat tacaaattta gaatcgcctt
     5881 tctgatgaca gaacatcccg agtaaagaaa ctaagaaaag taaataccca ggaattgcct
     5941 gagcggtgct atatttctcc tcgcaagtaa gtcctaatat attgaattgt tgtatagcca
     6001 gtttttgtat tttcctagct catggatgtg ggatccctct cccctttctc tgctcaaagg
     6061 taagcggctc gtcagaatca tattgatatt tactgagaag tcagatcaac tttccaaggc
     6121 aacagatcgc gtacccggtt tgccggtcag tcctggatat gttcaataac gtaacgcagc
     6181 catttttctg gctccacatt gttcagacgg catgtgccga tcagcgagaa caacaccgct
     6241 gcatgttcgt caccgctgtc ggaacctgcg agtcgagtca gccggagaga gtttcactct
     6301 ccggctgctc acggaaccgt acgtgacact ctcgcgtcat acggctcttg atcactcatt
     6361 cgatgcacgt agtaaatacc agtgagcaaa ttgatcttac ccagcaatac ggtcagttac
     6421 cgcgcacatg gcctgcctgt gtcagaaaat ctgctggagc aggattttta cgccagtggt
     6481 ccgaaccaga agtgggcggg agacatcacg tacttacgta cagatgaagg ctggctgtat
     6541 ctggctgtgg tcattgacct gtggtcacgt gccgttattg gctggtccat gtcaccacgc
     6601 ctgacggcgc aactggcctg cgatgccctg cagatggcgc tgtggcggcg taagagaccc
     6661 cggaacgtta tcgttcactc ggaccgagga agtcagtact gttcagcaga ttatcaggcg
     6721 ctgctgaagt ggcataatct gcgtggcagt atgagcgcaa agggctgctg ctacgataat
     6781 gcctgcgtgg aaagcttctt tcattcgctg aaagtggaat gtctccacgg agaacacttt
     6841 atcagccggg aaataatgcg ggcaacagtg tttaattata tcgaatgtga ttacaatcgc
     6901 tggcgacggc acagttggtg tggcggcctc agtccggaac aatttgaaaa ccagaacctc
     6961 gcttaggcct gtgtccatat tacgtgggta ggatca
//
LOCUS       DADMJB010000192         6921 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.195, whole genome shotgun sequence.
ACCESSION   DADMJB010000192 DADMJB010000000
VERSION     DADMJB010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6921
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.195"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            598..882
                     /locus_tag="JN078_003694"
     CDS             598..882
                     /locus_tag="JN078_003694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858243.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HAY9042738.1"
                     /translation="MIYGGFMKSGVQLNLRARESQRILIDAAAEILHKSRTDFILEMA
                     CKAAEDVILDRRVFNFNDRQYEEFIEMLDAPVADDPAIEKLLARKPQWDV"
     gene            870..1355
                     /locus_tag="JN078_003695"
     CDS             870..1355
                     /locus_tag="JN078_003695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAY9042739.1"
                     /translation="MGCVTAPEPLSSFHQVAEFVSGEAVLDDWLKQKGLKNQAIGATR
                     TFVVCRKGTQQIVGFYSLATGSVNHTEATGNLRRNMPDPIPVIILARLAVDVSFRGKG
                     LGADLLHDAVRRCYRVAENIGVRAIMVHALTENAKQFYIHHGFKPSKTQVQTLFLKLP
                     Q"
     gene            1389..2567
                     /gene="ltrA"
                     /locus_tag="JN078_003696"
     CDS             1389..2567
                     /gene="ltrA"
                     /locus_tag="JN078_003696"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005017045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HAY9042740.1"
                     /translation="MCVATREPPGCDGQTLKMFDQQRDGNLYKIWNRLCSGTWFPPPV
                     LEKRIPKSNGKERILGIPTVSDRIAQGAIKLFMEEKLDPIFHADSYGYRPGKSAHDAL
                     KQCAIRCWRYSWILEVDISAFFDHVKHDLVLKALEHHGMPKWVILYCRRWMEAPMQSC
                     ENGELITRTRGTPQGGVISPLLANLFLHYAFDLWMEREYRGVPFERYADDIVVHCSRM
                     SDATRLKNRLSERFSEVGLVLNAGKTNIAYIDTFKRRNVATSFTFLGYDFKVRTLKNF
                     KGERYRKCMPGASNAAMRKITETIKKWRIHRSTAESLLDFARRYNTIVRGWIEYYGKF
                     WSRNFNYRLWSAMQSRLLKWMQSKYRLSNRKAQRKLTLVRKEYPKLFVHWYLLRASNE
                     "
     gene            2650..2804
                     /locus_tag="JN078_003697"
                     /pseudo
     CDS             2650..2804
                     /locus_tag="JN078_003697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(2858..3340)
                     /locus_tag="JN078_003698"
                     /pseudo
     CDS             complement(2858..3340)
                     /locus_tag="JN078_003698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016154415.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
     gene            complement(3596..4576)
                     /locus_tag="JN078_003699"
     CDS             complement(3596..4576)
                     /locus_tag="JN078_003699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HAY9042741.1"
                     /translation="MENRKHRPTIGRTLNTNILNNTEEISAPVHVFTLNTGRKAKFTE
                     IKVDHDKVDTQTFVVEEVNGREQTALTPDSLKDITRTIRLQQFYPCIGIRTGDLIEIL
                     DGSRRRAAALLCKVGLRVLVTDDELTVSEAQHLAKDLQTSLEHNIREIGLRLVRLKEA
                     GMNQKQIAEREGLSAAKVTRALQAASVPKDFVSLFPVQSELTYADYRQLAELSERLRL
                     GDISIDEVVKNISPSIELITADDNLSEDEVKNSIMRLITKEMSSLLDSGVKDKAVVTL
                     LWKFDSKDKFARKRVKGRTFSYEFGRLPLEVQDKLDRMIALVLKDNLNSL"
     gene            complement(4576..5775)
                     /locus_tag="JN078_003700"
     CDS             complement(4576..5775)
                     /locus_tag="JN078_003700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HAY9042742.1"
                     /translation="MTSFEQLSKVAQRADKMLLALTKQIQEQKQEFQADVFYQVYSKS
                     AVAKLPKLTRASVDGAVGEMEAQGYQFEKRPAGTATKYALTIQNIIDIYAHRGIPKYR
                     DRYSEAYSIFIGSLKGGVSKTVSSVSVAHALRAHPHLLSEDLRILLLDLDPQSSATMF
                     LNYLHAVGLVDTTAPQAMLQNVSREELLEDFIVPSVIPGVYVMPASIDDAFIASNWDT
                     LCEEHLLGQNKHAILRENIIDKLKHDFDFILIDTGPHLDAFLKNAIAAADIMFTPVPP
                     AQVDFHSTLKYLARLPELVQIIEQDGCSCRLQANIGFMSKLANKSDHKYCHSLTKEIF
                     GGDMLDVSMPRLDGFERSGESFDTVISANPVTYVGSGEALKNARMAAEDFAKAVFDRI
                     EFIRANY"
     gene            complement(6097..6435)
                     /locus_tag="JN078_003701"
                     /pseudo
     CDS             complement(6097..6435)
                     /locus_tag="JN078_003701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(6502..>6921)
                     /locus_tag="JN078_003702"
     CDS             complement(6502..>6921)
                     /locus_tag="JN078_003702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HAY9042743.1"
                     /translation="AMGYEAVRAGIQVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMA
                     PRLLIIDEIGYLPFSQKEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTS
                     AMLGRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE"
BASE COUNT         1861 a         1573 c         1650 g         1837 t
ORIGIN      
        1 cggcatccgg catataggca gcatgaacgc aacacaggct ctcgtacgga acgtgggaac
       61 ctgtcgtctc gatgctaagg gagcggcgcg gagcagaggc actgcaagcg cctgagtacc
      121 gatgcgagac acaggggcag atggcttcgt agtagtgagg aagtgcctgt aatgggcatg
      181 gagcgaaggg ggtcagtcga ggcgtttgag gttaccaatc gaagctatac ccggtaatgg
      241 cgcaggttga cctgcacttg gccaagtgga ttgcccgcaa acacaagcga gcgcgaggta
      301 gtctggtgcg tgcattcgag tggttactgc gaattcgtca cgactgcccg acgctgtttg
      361 cacactggtg cttagcttac gatacttgaa tggttcaaca acaagagccg tatgacgcga
      421 gagtgtcacg tacggttccg tgggagcgta ggggggcggt gcccctgcgc cacccgatat
      481 cccctttgag tgcggttacg tccacagagg taaatgccgc tgacgcggca tctgtaatct
      541 gttactttgt gtacatcatt tgctatatat tgtcaatatg ctattgttgt aaagcaaatg
      601 atatacggag gctttatgaa atcaggtgtt cagctcaatc tcagagcaag agaatcacag
      661 cggatactca ttgatgctgc tgcagaaatt cttcataagt cgcgtacaga tttcattctg
      721 gaaatggcct gtaaagctgc tgaagatgtt attctcgacc ggcgggtgtt taattttaat
      781 gacaggcaat atgaagagtt cattgaaatg cttgatgctc cggttgcaga tgatcctgcc
      841 atcgaaaaat tgctggcaag gaaacctcaa tgggatgtgt aactgcacca gaacctttat
      901 cctcatttca tcaggtcgct gaatttgtca gcggtgaagc tgtacttgat gactggttaa
      961 agcagaaggg gctaaaaaat caggcaatcg gagccacccg gacttttgtt gtatgcagaa
     1021 aaggtacgca acaaatagtc ggtttttact cactggccac tggtagtgtc aatcatacag
     1081 aagctacagg taaccttcgg cgcaatatgc cagaccccat tcctgtaatt atacttgcac
     1141 gcctggctgt agatgtgtca tttcgaggaa aagggcttgg cgcggattta cttcatgatg
     1201 cagttcgtcg ttgttacagg gttgccgaaa atatcggtgt gcgtgcaatt atggttcatg
     1261 cgcttacgga aaacgcaaaa cagttttata ttcatcatgg ttttaagcca tcaaaaactc
     1321 aggtgcaaac attgtttctt aaactccctc aatagggagt aatgcactgg tctgggcatc
     1381 atatctggat gtgcgtcgca acaagggagc cccccggatg cgacgggcag actttgaaaa
     1441 tgttcgacca gcaacgtgat ggcaatctat acaagatctg gaaccggcta tgttcgggaa
     1501 catggtttcc gccaccagtg ctggaaaaac ggatcccgaa gtcgaatggc aaggaacgca
     1561 ttctggggat cccaacagta tccgatcgaa ttgctcaggg agcgataaaa cttttcatgg
     1621 aagaaaagct tgacccgatt ttccatgctg attcatatgg ttaccgacca ggcaaatcag
     1681 ctcatgacgc tctgaaacaa tgtgccatcc ggtgctggcg ttatagctgg atactggaag
     1741 tggacatcag tgcgtttttc gaccatgtga aacatgatct ggtgctcaaa gctctggaac
     1801 accacgggat gcctaaatgg gtcatcctgt actgtcgacg ctggatggaa gcgccaatgc
     1861 agagttgtga aaatggagaa ttaataaccc gaacacgagg cactccgcag ggcggggtca
     1921 ttagtccgct acttgctaac ttgttccttc actatgcatt tgatttgtgg atggaaagag
     1981 aatatcgggg ggtaccgttt gagaggtacg ctgacgatat tgtagtacat tgttcacgaa
     2041 tgagtgatgc aacaaggcta aagaacaggt tatcggagcg cttctcggaa gtcgggctgg
     2101 tcctgaatgc agggaaaacg aatatcgcct acattgacac gtttaaaagg agaaacgtcg
     2161 caacgagttt cacctttctc ggatatgact tcaaagtgcg tacgctgaag aatttcaaag
     2221 gcgaacggta ccgaaaatgc atgccgggtg cgtcaaatgc agcaatgcgc aaaataacag
     2281 aaacaatcaa gaagtggcgt atacatcgct caacagctga gagtttgctg gattttgcga
     2341 ggcgctacaa tacgatagtg agaggctgga tcgagtacta cggaaagttc tggtccagaa
     2401 atttcaacta tcgactgtgg agtgcaatgc agtcacgtct gctcaagtgg atgcagtcta
     2461 aatacagact ttcgaaccgg aaggctcagc gaaagctgac gctggtaagg aaggagtatc
     2521 cgaagctatt tgttcactgg tatttactac gtgcatcaaa tgagtgatca agagccgtat
     2581 gacgcgagag tgtcacgtac ggttccgtga gcagccgggg agtgaaattc tctccggctg
     2641 actcgactcg cgggttccga cagcgatgac gaacatgcgg cggtgttgta ctcgctgatc
     2701 ggcacatgcc gtctgaacaa tgtggaacca gaaaatggct gcgttacgtc attgagcata
     2761 tccaggactg gccggcaaac cgggtacgtg atctgttgcc ctagaaagtt gatctgagct
     2821 ctcagtaaat atcaatacgg ttctgacgag ccgcttactt ttggcgtaat tctgctgcgc
     2881 ctttactgaa cacaatgccg tattcagcaa gaagtccacg aatgtgattt atcagttgtg
     2941 tcctttccat tgaaaccaac cgacgcatat tcaaaaaagt ttggacgtcc tgttgctcca
     3001 gagtttttat tggtacgggt cgtatagttc catgttggca ggcctcagct attgcctgtg
     3061 cgtcgttata atcatttttc tggcaccgct gataagcttt aacatgttgt gccggaagca
     3121 atattacatc atggtcgagt ttcctgattt cccgggccca gtaatgagat gccccgccag
     3181 cctccatcgc aacagtcatt ttaggctgtt gcaccagcca gttaagcagt tgattgcgag
     3241 aaagtttggt ctttcctgcg ggtttgccat gagcattgat actgaaaaga taaaagttcg
     3301 ttttagccag atcaatgccg gtgattttct gttcagacat ggtatcccgc ttacttttgt
     3361 ggttaaagtt tatccatcat ggcgcaattg aaggctgccg tgaaagaggg ggaagactat
     3421 ctcatcggtt actgttaaac ggctaagaga aactatcttt ttcaagcaaa gaagatacgg
     3481 tgaaacaggc gatttcaccg tgaaatactg ttcaaaaaaa acgccaataa aagcaaaatt
     3541 tcttttaaaa cagccaatta aaaactggtg agttgctggc gaaaaacttg aattttcaca
     3601 gcgaattcag attatctttt agtacaagag caatcatacg atctaactta tcctgaactt
     3661 ccaacggtaa tctgccgaat tcatatgaga acgtacgtcc ctttactcgt tttcgagcaa
     3721 atttatcttt actatcaaat ttccataaca aagttacaac cgctttatcc tttactcctg
     3781 aatcaagcaa tgaagacatt tccttggtta taagccgcat aatactgttt ttaacctcgt
     3841 cttcagaaag attgtcatca gcagtaataa gctcaatact cggcgagata ttcttcacaa
     3901 cttcatcaat agatatatca cccagcctca gtcgttcact taattcagcc agttgcctgt
     3961 aatcggcgta tgtcagctca gactgaacag gaaaaagaga cacaaaatct ttaggtacgg
     4021 acgctgcttg gagggcacga gtcaccttag ctgccgacaa tccctctctt tccgcaattt
     4081 gcttctggtt cataccggcc tctttgagac gtactaaacg caacccaatt tcacgaatat
     4141 tatgttcaag tgacgtctgc aaatctttcg ccagatgctg agcttcagaa acagtaagct
     4201 catcatccgt tacaagtaca cgtaatccaa ccttgcatag caaagctgct gcccgacgac
     4261 gggaaccatc caaaatctca ataagatcgc cagtccgaat cccaatacat ggatagaatt
     4321 gttgtaaacg tatagttctg gtgatgtctt ttagtgagtc cggcgtcagg gctgtctgtt
     4381 cgcggccatt cacctcttca accacaaaag tttgagtgtc cactttgtca tgatcaacct
     4441 tgatctcagt aaattttgcc tttcggccag tattgagggt aaatacatga actggagccg
     4501 atatttcttc agtattattc aggatatttg tattcagcgt acggccaata gtcggtcggt
     4561 gctttctgtt ttccatcagt agttggccct tataaattca atacgatcaa aaactgcttt
     4621 agcgaaatct tctgctgcca tacgtgcatt tttcaaagct tcaccactgc caacataagt
     4681 aacaggattc gcagatatca cggtatcaaa cgactcgccg cttctctcaa aaccatcaag
     4741 acgtggcatt gaaacatcaa gcatgtcacc accgaaaatc tcttttgtca ggctatggca
     4801 gtatttatga tctgacttat tcgccagttt cgacatgaag ccaatatttg cctgcaaacg
     4861 gcatgaacat ccatcctgtt caataatctg tacaagttca ggtaaacgag ccaaatattt
     4921 aagcgtggaa tggaaatcaa cttgtgctgg cggcaccggt gtaaacatga tatctgcggc
     4981 agcaatggca tttttcaaaa atgcgtccag atgcgggcct gtatcaataa ggatgaagtc
     5041 gaaatcatgc ttcagcttat caataatatt ctcacgcaat atcgcgtgtt tgttttgtcc
     5101 taatagatgc tcctcgcaca gagtatccca gtttgatgca ataaaggcgt cgtcaataga
     5161 agccggcata acataaacgc cagggataac tgacggaacg ataaaatctt ccagtaattc
     5221 ctcacgactc acgttctgca acatagcctg cggtgcggtt gtatcaacca gccccaccgc
     5281 atgcaagtag ttcagaaaca tagtggctga tgactgggga tctaaatcaa ggagcagaat
     5341 acgtaaatct tctgacagca ggtgaggatg agcacgcagg gcgtgagcta cggaaacact
     5401 actcacggtt ttagacacac cgccttttag actaccgatg aatatggaat atgcctcact
     5461 ataacgatcg cgatatttag gaatgccacg atgtgcatag atatcgataa tgttctggat
     5521 ggttaatgca tattttgtcg cggttcctgc tgggcgtttt tcaaactgat agccctgagc
     5581 ctccatctca ccgactgcac catccacgct tgcgcgcgtt aattttggaa gcttagctac
     5641 agcagacttt gaatagactt gataaaaaac atcagcctga aactcctgct tttgctcctg
     5701 aatctgtttt gttagggcga gcaacatttt atctgcacgc tgcgcaacct tacttaactg
     5761 ctcaaaacta gtcattcccc ctccgtgcta tgtaggattt taacttatta caaaaaaaac
     5821 tgcattagca gggtaatgca tgcaagtgca tattgtacat gcttatatta aaaatgcgcg
     5881 cattgctgat ttattaatca tcggaatgaa tattactgta agatagtatg cctttccggg
     5941 agaaagacgc tgatttcccc cgaataatcc agttcaccac cacactccgg acaacagctt
     6001 tcttcaggct ccagatggtg tatttcgcgg gaaacatgtt ccggtaacgg acggcgatga
     6061 cgtgactgtc gcaacaggcg ggggtagtgc ttccaatcag tagaacatgt gcttttcaat
     6121 gaaggagccg atgacttttt cgtggatttc cacggaacgc gagaagcaga ttgttttacg
     6181 tgccagccgc ttgatgcggg tgcggagggt ccggttgtta cgttcaatac gttgcgtgaa
     6241 gattttgccg gtcaggtgtt tctccttcgg cacttctctg gcgtagctgc cccagtcatc
     6301 gctggtcacc atgccgatac agaacggagt caacagggct aacagttccc gacaggtctc
     6361 atcattccgt ggcccgaaag tgtaagccaa cacaccgcca gttttagtgt tgtacgcata
     6421 ccagagccag tgttgtgtca acgacggatg aaaagtgatc cacttatatc tccaccaacg
     6481 gcccaatatt gatccaccgt tttactcagg attagcttct gctataaccc cggcctttcg
     6541 tttctgtctg agtcgatagc tttctccttt gatttgaacg acatgtgagt ggtgtaagat
     6601 acggcccagc atcgctgagg tcagtgctgc atcaccggcg aacgtttgat cccactgccc
     6661 gaacggtaga ttggatgtca ggatcattgc gctcttttca taacgtttag cgatgacctg
     6721 gaagaacagt tttgcttctt tctgactgaa cggcagatag cctatttcat caatgatgag
     6781 caggcggggg gccattactc cacgctgaag cgtcgtttta taacggccct gacgttgtgc
     6841 cgtagataac tgaagtaaca gatctgctgc tgttgtgaag cgaacttgga tacctgcacg
     6901 gactgcttca tagcccatcg c
//
LOCUS       DADMJB010000193         6895 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.196, whole genome shotgun sequence.
ACCESSION   DADMJB010000193 DADMJB010000000
VERSION     DADMJB010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6895
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.196"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            186..2102
                     /gene="dnaK"
                     /locus_tag="JN078_003703"
     CDS             186..2102
                     /gene="dnaK"
                     /locus_tag="JN078_003703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001737966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HAY9042744.1"
                     /translation="MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQ
                     DGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAW
                     VEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI
                     AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEV
                     LATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSA
                     QQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDI
                     DDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLL
                     DVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAAD
                     NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN
                     EDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE
                     SALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHAQQQTAGADASANNAKDD
                     DVVDAEFEEVKDKK"
     gene            2191..3321
                     /gene="dnaJ"
                     /locus_tag="JN078_003704"
     CDS             2191..3321
                     /gene="dnaJ"
                     /locus_tag="JN078_003704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HAY9042745.1"
                     /translation="MAKQDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAE
                     AKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIF
                     GGGRGRQRAARGADLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQT
                     CPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPA
                     GVDTGDRIRLAGEGEAGQHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAAL
                     GGEIEVPTLDGRVKLKVPGETQTGKLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLN
                     EKQKQLLQELQESFGGPTGEHNSPRSKSFFDGVKKFFDDLTR"
     gene            complement(3425..3634)
                     /gene="mokC"
                     /locus_tag="JN078_003705"
     CDS             complement(3425..3634)
                     /gene="mokC"
                     /locus_tag="JN078_003705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin MokC"
                     /protein_id="HAY9042746.1"
                     /translation="MLNTCRVPLTDRKVKEKRAMKQHKAMIVALIVICITAVVAALVT
                     RKDLCEVHIRTGQTEVAVFTAYESE"
     gene            4163..5329
                     /gene="nhaA"
                     /locus_tag="JN078_003706"
     CDS             4163..5329
                     /gene="nhaA"
                     /locus_tag="JN078_003706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HAY9042747.1"
                     /translation="MKHLHRFFSSDASGGIILIIAAILAMMMANSGATSGWYHDFLET
                     PVQLRVGSLEINKNMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAI
                     GGMIVPALLYLAFNYADPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALA
                     IIDDLGAIIIIALFYTNDLSMASLGVAAVAIAVLAVLNLCGVRRTGVYILVGVVLWTA
                     VLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSL
                     QGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMAVGIL
                     CGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRLRPSV"
     gene            5395..6294
                     /gene="nhaR"
                     /locus_tag="JN078_003707"
     CDS             5395..6294
                     /gene="nhaR"
                     /locus_tag="JN078_003707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_705976.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional activator NhaR"
                     /protein_id="HAY9042748.1"
                     /translation="MSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEE
                     RLQGKLFKRKGRGLEPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADA
                     LSKRLVSSVLNAAVVEGEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGL
                     FSVRIGECGVSFWCTNPPPEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEI
                     LGEFDDAALMKAFGAMHNAIFVAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERM
                     IQHPAVQRICNTDYSALFSPAAR"
     gene            complement(6332..6805)
                     /locus_tag="JN078_003708"
                     /pseudo
     CDS             complement(6332..6805)
                     /locus_tag="JN078_003708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000871680.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1754 a         1622 c         1779 g         1740 t
ORIGIN      
        1 ctgcgcaaaa gcacaaaaaa tttttgcatc tcccccttga tgacgtgggt tacgacccca
       61 tttagtagtc aaccgcagtg agtgagtctg caaaaaaatg aaattgggca gttgaaacca
      121 gacatttcgc ccctattaca gactcacaac cacatgatga ccgaatatat agtggagacg
      181 tttagatggg taaaataatt ggtatcgacc tgggtactac caactcttgt gtagcgatta
      241 tggatggcac cactcctcgc gtgctggaga acgccgaagg cgatcgcacc acgccttcta
      301 ttattgccta tacccaggat ggtgaaactc tggttggtca gccggctaaa cgtcaggcag
      361 tgacgaaccc gcaaaacacc ctgtttgcga ttaaacgcct gattggccgc cgcttccagg
      421 acgaagaagt acagcgtgat gtttccatca tgccgttcaa aattattgct gctgataacg
      481 gcgacgcatg ggtcgaagtt aaaggccaga aaatggcacc gccgcagatt tctgctgaag
      541 tgctgaaaaa aatgaagaaa accgctgaag attacttggg tgaaccggta actgaagctg
      601 ttatcaccgt accggcatac tttaacgatg ctcagcgtca ggcaaccaaa gacgcaggcc
      661 gtatcgctgg tctggaagta aaacgtatca tcaacgaacc gaccgcagct gcgctggctt
      721 acggtctgga caaaggtact ggcaaccgta ctatcgcggt ttatgacctg gggggtggta
      781 ctttcgatat ttctattatc gaaatcgacg aagttgatgg cgaaaaaacc ttcgaagttc
      841 tggctaccaa cggtgatacc cacctgggtg gtgaagactt cgacagccgt ctgatcaact
      901 acctggttga agaattcaag aaagatcagg gcattgacct gcgcaacgat ccgctggcaa
      961 tgcagcgcct gaaagaagcg gcagaaaaag cgaaaatcga actgtcttcc gctcagcaga
     1021 ccgacgttaa cctgccgtac atcactgcag atgcgaccgg tccgaaacac atgaacatca
     1081 aagtgactcg tgcgaaactg gaaagcttgg ttgaagatct ggtaaaccgt tccattgagc
     1141 cgctgaaagt tgcactgcag gacgctggcc tgtccgtatc tgatatcgac gacgttatcc
     1201 tcgttggtgg tcagactcgt atgccaatgg ttcagaagaa agttgctgag ttctttggta
     1261 aagagccgcg taaagacgtt aacccggacg aagctgtagc aatcggtgct gctgttcagg
     1321 gtggtgttct gactggtgac gtgaaagacg tactgctgct ggacgttacc ccgctgtctc
     1381 tgggtatcga aaccatgggc ggtgtgatga cgacgctgat cgcgaaaaac accactatcc
     1441 cgaccaagca cagccaggtg ttctctaccg ctgaagacaa ccagtctgcg gtaaccatcc
     1501 atgtgctgca gggtgaacgt aaacgtgcgg ctgataacaa atctctgggt cagttcaacc
     1561 tggatggtat caacccggca ccgcgcggca tgccgcagat cgaagttacc ttcgatatcg
     1621 atgctgacgg tatcctgcac gtttccgcga aagataaaaa cagcggtaaa gagcagaaga
     1681 tcaccatcaa ggcttcttct ggtctgaacg aagatgaaat ccagaaaatg gtacgcgacg
     1741 cagaagctaa cgccgaagct gaccgtaagt ttgaagagct ggtacagact cgcaaccagg
     1801 gcgaccatct gctgcacagc acccgtaagc aggttgaaga agcaggcgac aaactgccgg
     1861 ctgacgacaa aactgctatc gagtctgcac tgactgcact ggaaactgct ctgaaaggtg
     1921 aagacaaagc cgctatcgaa gcgaaaatgc aggagctggc acaggtttcc cagaaactga
     1981 tggaaatcgc ccagcagcaa catgcccagc agcagactgc cggtgctgat gcttctgcaa
     2041 acaacgcgaa agatgacgat gttgtcgacg ctgaatttga agaagtcaaa gacaaaaaat
     2101 aatcgcccta taaacgggta attatactga cacgggcgaa ggggaatttc ctctccgccc
     2161 gtgcattcat ctaggggcaa tttaaaaaag atggctaagc aagattatta cgagatttta
     2221 ggcgtttcca aaacagcgga agagcgtgaa atcaaaaagg cctacaaacg cctggccatg
     2281 aaataccacc cggaccgtaa ccagggtgac aaagaggccg aggcgaaatt taaagagatc
     2341 aaggaagctt atgaagttct gaccgactcg caaaaacgtg cggcatacga tcagtatggt
     2401 catgctgcgt ttgagcaagg cggcatgggc ggcggcggtt ttggcggcgg cgcagacttc
     2461 agcgatattt ttggtgacgt tttcggcgat atttttggcg gcggacgtgg tcgtcaacgt
     2521 gcggcgcgcg gtgctgattt acgctataac atggagctca ccctcgaaga agctgtacgt
     2581 ggcgtgacca aagagatccg cattccgact ctggaagagt gtgacgtttg ccacggtagc
     2641 ggtgcaaaac caggtacaca gccgcagacc tgtccgacct gtcatggttc tggtcaggtg
     2701 cagatgcgtc agggtttctt tgccgtgcag cagacctgtc cacactgtca gggccgcggt
     2761 acgctgatca aagatccgtg caacaaatgt catggtcatg gtcgtgttga gcgcagcaaa
     2821 acgctgtccg ttaaaatccc ggcaggggtg gacactggag accgcatccg tcttgcgggc
     2881 gaaggtgaag cgggccagca tggcgcaccg gcaggcgatc tgtacgttca ggttcaggtt
     2941 aaacagcacc cgattttcga gcgtgaaggc aacaacctgt attgcgaagt cccgatcaac
     3001 ttcgctatgg cggcgctggg tggcgaaatc gaagtaccga cccttgatgg tcgcgtcaaa
     3061 ctgaaagtgc ctggcgaaac ccagaccggt aagcttttcc gtatgcgcgg taaaggcgtc
     3121 aagtctgtcc gcggtggcgc acagggtgat ttgctgtgcc gcgttgtcgt cgaaacaccg
     3181 gtaggcctga acgagaagca gaaacagctg ctgcaagagc tgcaagaaag cttcggtggc
     3241 ccaaccggcg agcacaacag cccgcgctca aagagcttct ttgatggtgt gaagaagttt
     3301 tttgacgacc tgacccgcta acctccccaa aagcctgccc gtgggcaggc ctgggtaaaa
     3361 atagggtgcg ttgaagatat gcgagcacct gtaaagtggc ggggatccct ccccgccgtt
     3421 gctcttactc ggattcgtaa gccgtgaaaa cagcaacctc cgtctggcca gttcggatgt
     3481 gaacctcaca gaggtctttt ctcgttacca gcgccgccac tacggcggtg atacagatga
     3541 cgatcagggc gacaatcatc gccttatgct gcttcattgc tctcttctcc ttgaccttac
     3601 ggtcagtaag aggcactcta catgtgttca gcatataggg ggcctcgggt tgatggtaaa
     3661 atatcactcg gggcttttct ctatctgccg ttcagctaat gcctgagaca gacagcctca
     3721 agcacccgcc gctattatat cgctctcttt aacccatttt gttttatcga ttctaatcct
     3781 gaagacgcct cgcatttttg tggcgtaatt ttttaatgat ttaattattt aactttaatt
     3841 tatctcttta tcgcaattat tgacgacaag ctggattatt tttgaaatat tgtcctaaca
     3901 aataacgccg actgacaaga aattaattat tacttttcct aattaatccc tcagaaatcc
     3961 tcaccttaag ctatgattat ctgagcttag ggtcactcgt cagcgcttac agccgtcaaa
     4021 aactcatctc accgctgatg gcgaaaattc tacaaaggct cgtaaaaaac gaattattcc
     4081 tacactataa tctgatttta acgatgattc gtgcggggta aaatagtaaa aacgatttat
     4141 tcacctgaaa gagaaataaa aagtgaaaca tctgcatcga ttctttagca gtgatgcctc
     4201 gggaggcatt attcttatca ttgccgctat cctggcgatg atgatggcca acagcggcgc
     4261 aaccagtgga tggtatcacg actttctgga gacgccggtt cagctccggg ttggttcact
     4321 cgaaatcaac aaaaacatgc tgttatggat aaatgacgcg ctgatggcgg tatttttcct
     4381 gttagtcggt ctggaagtta aacgtgaact gatgcaagga tcgctagcca gcttacgcca
     4441 ggccgcattt ccagttatcg ccgctattgg tgggatgatt gtgccggcat tactctatct
     4501 ggcctttaac tatgccgatc cgattacccg cgaagggtgg gcgatcccgg cggctactga
     4561 cattgccttt gcacttggag tgctggcgct gttgggaagt cgtgttccgt tagcactgaa
     4621 gatctttttg atggctctgg ctattatcga cgatcttggg gccatcatta tcatcgcatt
     4681 gttctacact aatgacttat cgatggcctc tcttggcgtc gcggctgtag caattgcggt
     4741 actcgcggta ttgaatctgt gtggtgtacg ccgcacgggc gtctatattc tggttggcgt
     4801 agtgttgtgg actgcggtgt tgaaatcggg ggttcacgca accttggcgg gggtaattgt
     4861 cggcttcttt attcctttga aagagaagca tgggcgttct ccagcgaagc gactggagca
     4921 tgtgttacac ccgtgggtgg cgtatctgat tttgccgctg tttgcatttg ctaatgctgg
     4981 cgtttcactg caaggcgtca cgctggatgg cttgacctcc attctgccat tggggatcat
     5041 cgctggcttg ctgattggca aaccgctggg gattagtctg ttctgctggt tggcgctgcg
     5101 tttgaaactg gcgcatctgc ctgagggaac gacttatcag caaattatgg cggtggggat
     5161 cctgtgcggt atcggtttta ctatgtctat ctttattgcc agcctggcct ttggtagcgt
     5221 agatccagaa ctgattaact gggcgaaact cggtatcctg gtcggttcta tctcttcggc
     5281 ggtaattgga tacagctggt tacgcgttcg tttgcgtcca tcagtgtgac aggacggttt
     5341 accggggagc cataaacggc tcccttttca ttgttatcag ggagagaaat gagcatgtct
     5401 catatcaatt acaaccactt gtattacttc tggcatgtct ataaagaagg ttccgtggtt
     5461 ggcgcagcgg aggcgcttta tttaactcca caaaccatta ccggacagat ccgggctctg
     5521 gaagagcgcc tgcaaggcaa attatttaag cgcaagggac gtggtctcga acccagcgag
     5581 ctgggagaac tggtctatcg ctatgccgat aaaatgttca ccttaagcca ggaaatgctg
     5641 gatattgtga actatcgcaa agaatccaat ttattgtttg acgttggcgt ggctgatgca
     5701 ctttccaaac gcctggtcag tagcgtgctg aatgctgcag tggtagaagg cgagccgatt
     5761 catcttcgct gcttcgaatc cacccacgaa atgctactgg agcaattaag ccagcataaa
     5821 ctggatatga tcatttccga ctgtccgata gactctacgc agcaggaagg cctgttctcc
     5881 gtgagaattg gcgaatgtgg cgtgagtttc tggtgtacaa atccaccacc agaaaaaccg
     5941 ttcccggctt gtctggaaga acggcgactt ttgattcctg ggcgacgttc aatgttaggg
     6001 cgcaaattgc ttaactggtt taactcccag ggattaaacg tagaaatcct cggcgagttt
     6061 gatgatgccg cgttgatgaa agcttttggt gcaatgcaca atgcaatctt cgttgcccca
     6121 acgctttatg catatgactt ttatgccgat aaaactgtcg tagaaattgg tcgcgtcgag
     6181 aatgtgatgg aagagtacca tgctattttt gctgagcgga tgattcagca cccggcggta
     6241 cagcgaatct gcaatacgga ttattctgcg ctttttagtc cagcggcgcg ttaatcggca
     6301 gctcccccaa agttaaagtg gaggagatag attagttgta cataaccacg attttgactc
     6361 ggctcattat ttgcccgctt gagacattat ttccatatgt acgcgggcga ataaatagag
     6421 gaatctgatt acttccttca tggggatgct gaaaagagta gtaattgctt ttaccatact
     6481 ggatttcatt cgtaccatca ttggagagtt gaaagcctac ttgacccgca ccgtcctcac
     6541 tgttttctaa ctcatttttt aatatgctgg ttcctgactc ctgtatcgtc actggttcaa
     6601 agtaatattc aacatcactg ggttcaaaaa ctaattcacc ttgctcgccc tggatgcagt
     6661 caaatcttat atgatgaaac tgataatttt cattattgat acgagacagt acaaatcgtc
     6721 cagtgtcgat ggattgatct tcaaaaccac aggtcattaa atttaccagt aaaatagtat
     6781 ttaaattata attaaagcgg acgctggtaa tgctgccaac ttactgattt agtgtatgat
     6841 ggtgatttta aggtgcttgc gtggctttca tttccatcag atgtccttcc tgctc
//
LOCUS       DADMJB010000194         6849 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.197, whole genome shotgun sequence.
ACCESSION   DADMJB010000194 DADMJB010000000
VERSION     DADMJB010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6849)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6849)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6849
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.197"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..297
                     /locus_tag="JN078_003709"
     CDS             <1..297
                     /locus_tag="JN078_003709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313164.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAY9042749.1"
                     /translation="LPYLFLALAFPFFKARQDLDRPFVIFKTRMSAMIATVVVVLVVT
                     FANVFTIIPPVVEAGDWDSTLWMIGGPVFFSLLAMAIYQNYCSRMANKPELALD"
     gene            complement(448..3771)
                     /gene="mscM"
                     /locus_tag="JN078_003710"
     CDS             complement(448..3771)
                     /gene="mscM"
                     /locus_tag="JN078_003710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="miniconductance mechanosensitive channel MscM"
                     /protein_id="HAY9042750.1"
                     /translation="MRLIITFLMAWCLSWGAYAATAPDSKQITQELEQAKAAKPAQPE
                     VVEALQSALNALEERKGSLERIKQYQQVIDNYPKLSATLRAQLNNMRDEPRSVSPGMS
                     TDALNQEILQVSSQLLDKSRQAQQEQERTREIADSLNQLPQQQTDARRQLNEIERRLG
                     TLTGNTPLNQAQNFALQSDSARLKALVDELELAQLSANNRQELARLRSELAEKESQQL
                     DAYLQALRNQLNSQRQLEAERALESTELLAENSADLPKDIVAQFKINRELSAALNQQA
                     QRMDLVASQQRQAASQTLQVRQALNTLREQSQWLGSSNLLGEALRAQVARLPEMPKPQ
                     QLDTEMAQLRVQRLRYEDLLNKQPLLRQIHQADGQPLTAEQNRILEAQLRTQRELLNS
                     LLQGGDTLLLELTKLKVSNGQLEDALKEVNEATHRYLFWTSDVRPMTIAWPLEIAQDL
                     RRLISLDTFSQLGKASVMMLTSKETILPLFGALILVGCSIYSRRYFTRFLERSAAKVG
                     KVTQDHFWLTLRTLFWSILVASPLPVLWMTLGYGLREAWPYPLAVAIGDGVTATVPLL
                     WVVMICATFARPNGLFIAHFGWPRERVSRGMRYYLMSIGLIVPLIMALMMFDNLDDRE
                     FSGSLGRLCFILICGALAVVTLSLKKAGIPLYLNKEGSGDNITNHMLWNMMIGAPLVA
                     ILASAVGYLATAQALLARLETSVAIWFLLLVVYHVIRRWMLIQRRRLAFDRAKHRRAE
                     MLAQRARGEEEAHHHSSPEGAIEVDESEVDLDAISAQSLRLVRSILMLIALLSVIVLW
                     SEIHSAFGFLENISLWDVTSTVQGVESLEPITLGAVLIAILVFIITTQLVRNLPALLE
                     LAILQHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFG
                     LQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNK
                     AFITEQFINWSLSDSVTRVVLTIPAPADANSEEVTEILLTAARRCSLVIDNPAPEVFL
                     VDLQQGIQIFELRIYAAEMGHRMPLRHEIHQLILAGFHAHGIDMPFPPFQMRLESLNG
                     KQTGRTLTSAGKGRQAGSL"
     gene            complement(3793..4761)
                     /gene="psd"
                     /locus_tag="JN078_003711"
     CDS             complement(3793..4761)
                     /gene="psd"
                     /locus_tag="JN078_003711"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313166.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HAY9042751.1"
                     /translation="MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKY
                     YKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEED
                     KILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYV
                     PGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTIT
                     PPREGIIKRWTWPAGENDGSVALLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSV
                     TKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKDQV"
     gene            complement(4858..5910)
                     /gene="rsgA"
                     /locus_tag="JN078_003712"
     CDS             complement(4858..5910)
                     /gene="rsgA"
                     /locus_tag="JN078_003712"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313167.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small ribosomal subunit biogenesis GTPase RsgA"
                     /protein_id="HAY9042752.1"
                     /translation="MSKNKLSKGQQRRVNANHQRRLKTSKEKPDYDDNLFGEPDEGIV
                     ISRFGMHADVESADGDVHRCNIRRTIRSLVTGDRVVWRPGKPAAEGVNVKGIVEAVHE
                     RTSVLTRPDFYDGVKPIAANIDQIVIVSAILPELSLNIIDRYLVACETLQIEPIIVLN
                     KIDLLDDEGMAFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGV
                     GKSSLLNELLGLQKEILTNDVSDNSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLW
                     HLEPEQITQGFVEFHDYLGLCKYRDCKHDTDPGCAIREAVEEGKIAETRFENYHRILE
                     SMAQVKTRKNFSDTDD"
     gene            6005..6550
                     /gene="orn"
                     /locus_tag="JN078_003713"
     CDS             6005..6550
                     /gene="orn"
                     /locus_tag="JN078_003713"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418586.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HAY9042753.1"
                     /translation="MSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGP
                     TIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKS
                     PICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDSFTKQGTHQA
                     MDDIRESVAELAYYREHFIKL"
     gene            6761..6836
                     /locus_tag="JN078_003714"
     tRNA            6761..6836
                     /locus_tag="JN078_003714"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6794..6796,aa:Gly,seq:gcc)
BASE COUNT         1583 a         1839 c         1839 g         1588 t
ORIGIN      
        1 cttccttacc tgttcctcgc gctggctttc ccattcttta aagcacgtca ggatctcgac
       61 agaccatttg tgattttcaa aacgcgtatg tcggcaatga ttgcgacggt ggttgtcgta
      121 ctggtggtga catttgcgaa cgtcttcacc attattccgc ctgtggttga agccggagac
      181 tgggacagca cattgtggat gattggcggc cctgtcttct tctcgctgtt agcgatggcg
      241 atttaccaga actattgcag tcgcatggcg aataaacctg agttagctct cgactgatca
      301 tatgaaatcc tgcaactcat cgtctctccg gcgatgagtt gtcaggaagt aatgcgtatg
      361 gatgatactc tccagggccg gtgataactg aagatgatgt taagctgcta aatgagccac
      421 gttgacatca tttggcagct tcatgcatta caaacttccc gcctgacgac ctttgcccgc
      481 agacgtcagc gttctccccg tttgtttacc gttgaggctt tccagacgca tctggaaggg
      541 cgggaatggc atatcgatac cgtgggcatg gaagccagcc agaatcagct ggtggatctc
      601 atggcgtagc ggcatacggt gacccatctc agcggcataa atacgcagct cgaaaatctg
      661 aatcccttgt tgcagatcca ccaggaagac ttccggtgcc gggttgtcga tcaccagcga
      721 gcagcgacgc gctgcggtga gcaggatttc cgtcacttct tcactgttgg catcagcagg
      781 ggccggaatc gtcaacacta cgcgcgtaac cgagtcagag agcgaccagt tgataaactg
      841 ctcggtaata aacgccttgt tcggcacgat tatctcttta cggtcccagt cgctgatggt
      901 ggtggcgcgg gtgttaattt tcgtcacgct accggtgaga tcgcgaattg tcaccgtatc
      961 gccaatgcga atcggttttt cgaacaggat aatcagacca gagataaagt tggcgaaaat
     1021 ttcctgcaaa ccaaaaccga gaccaacacc gagcgcggcg accagccact gcaatttcga
     1081 ccattcaata ccaatcatcg agaagccgac cagcccgcca atcagcatca gcagatattt
     1141 ggtgatggtg gtgatggcgt agcctgtacc cggcgttaaa tccaggtgct gcaaaatcgc
     1201 cagttccagc agcgcgggca ggttgcgcac cagctgcgtg gtgatgataa acaccagaat
     1261 ggcaatcagc accgcaccga gggtaattgg ctccagactt tctacgcctt gtaccgtgga
     1321 ggtgacatcc cacagcgaaa tattttcgag gaagccgaaa gcggaatgga tttctgacca
     1381 cagcacaatg acagaaagca gggcgatcaa catcaaaatt gagcgcacca gccgcaagga
     1441 ttgcgcactg atggcatcga gatcgacttc gctttcatcg acttcaattg ctccttccgg
     1501 gctactgtga tgatgcgctt cctcttcgcc acgcgcacgt tgcgctaaca tctctgcccg
     1561 gcgatgcttc gcccggtcaa acgccagcct gcggcgctgg atcagcatcc agcggcggat
     1621 aacgtgataa accaccagta gcaggaacca gatggcaacc gaggtttcaa gcctcgctaa
     1681 cagcgcctgt gccgttgcca gataacccac agccgacgcc agaatggcaa ccaacggcgc
     1741 gccaatcatc atgttccaca gcatatggtt ggtaatgttg tcgccgctgc cctctttgtt
     1801 gagatacagt gggatcccgg cctttttcag gctgagggtg accaccgcca gcgcaccgca
     1861 aatgaggata aagcaaagcc gtcccagcga accggagaat tcacggtcgt cgaggttatc
     1921 gaacatcatc agcgccataa tcagcggcac aataagcccg atgctcatca ggtagtagcg
     1981 catcccacgg gaaacacgtt cgcgcggcca gccaaaatga gcgataaaca agccgttcgg
     2041 gcgggcaaag gtggcgcaaa tcatcactac ccacagcagc ggcacggtag ccgttacacc
     2101 atcgccaatc gcgaccgcca gcggataagg ccacgcctcg cgcaagccgt aacccagcgt
     2161 catccacagc accggtaacg gtgacgcgac gagaatcgac cagaaaagag tgcgcaacgt
     2221 cagccagaag tgatcctgag tcactttgcc aactttcgcc gccgaacgtt caagaaaacg
     2281 ggtgaaatag cggcgcgagt aaatactgca accgaccaga atcaacgcgc caaacagcgg
     2341 caaaattgtc tctttgctgg tcagcatcat cacactggct ttgcccaact gactgaaggt
     2401 gtccagcgaa atgagacgac gcagatcctg ggcgatttcc agcggccagg cgatggtcat
     2461 cgggcgcacg tcagaggtcc agaacagata gcggtgcgtt gcttcgttca cctctttcag
     2521 cgcatcctcc agttgcccgt tggagacttt cagcttggtc agttccaata gtagcgtgtc
     2581 gccaccctgc aacaatgagt tcagcaactc acgctgagtg cgcagttgtg cttccagaat
     2641 acggttttgc tcggcggtca gcggctgacc gtcggcctga tggatttgcc gtagcagcgg
     2701 ctgtttatta agcagatcct cataacgtaa ccgttgcaca cgcaactgcg ccatttcggt
     2761 atcaagctgt tgtggttttg gcatttctgg cagccgtgcc acctgcgccc gcagcgcttc
     2821 gccgagcaga ttggacgatc ccagccattg cgactgttca cgcagcgtat tcaacgcctg
     2881 ccggacctgt aacgtctggc tggcagcctg acgctgttgc gaggcaacga gatccatccg
     2941 ctgcgcctgt tgattcaaag ccgccgatag ttcgcggtta attttgaatt gcgcgacgat
     3001 atctttcggc aaatcggcgc tgttttctgc cagcaattcg gtactttcca gcgcccgctc
     3061 cgcctcaagc tgacgttggc tgtttaattg attacgcaag gcctgcaaat acgcatccag
     3121 ttgctggctc tctttttccg ccagctctga gcgtaagcgc gctaattcct ggcggttatt
     3181 ggcagacagc tgcgccagct ccagttcatc aacgagcgcc ttaagacgtg cagagtcaga
     3241 ctgcaacgcg aaattttgtg cctgattgag cggagtattg ccggtaagcg ttcccaggcg
     3301 gcgctcgatc tcatttaact gacggcgggc gtcggtttgc tgttgcggca gttgattcag
     3361 cgaatcggca atctcgcggg tgcgctcctg ctcttgctgg gcctgacggc ttttatccag
     3421 caactggctg ctgacctgga gaatttcctg attcagcgcg tcggtagaca ttcccggcga
     3481 cacgctgcgc ggctcgtcac gcatgttgtt taattgtgcg cgcagagtag cggagagttt
     3541 cggataatta tcgataactt gctgatattg tttgatgcgc tcaagggaac cttttcgttc
     3601 ctcaagcgca tttaaggcag actggagcgc ctctacgact tccggctgtg cgggtttcgc
     3661 cgcttttgcc tgctccagtt cctgagtgat ttgtttgcta tcgggggccg tcgcggcgta
     3721 cgccccccaa ctgaggcacc aggccatcag aaaagtgata atcaggcgca cgtcagcgtt
     3781 tcctttgatg gattagacct ggtctttttt atcgtcaacc aatgggctgg cgtcgtgttc
     3841 tgcttcgatc tcttcagcag gaagtggggc gggttcagcg tctggcgtaa caaaggtttc
     3901 ggtagatact gccagcggct ggccaatttt cgtgacagac aggctttcca gttgctcaac
     3961 cagattcact ttacccggtg caaacaggtt gataacggtg gaaccgagtt taaagcgacc
     4021 catttcctgg cctttcagca gtgccacaga accgtcgttt tccccggcag gccaggtcca
     4081 gcgcttgatg ataccttcgc gcggcggcgt aatggtgccc gcccagaccg tctcaatgct
     4141 gccaacaatc gtcgctccga ccagaatctg cgccattggg ccaaattcgg tatcgaaaag
     4201 gcaaatcacg cgttcgttac gggcaaacag attcggcacg ttctgagcgg tgagatggtt
     4261 aacggagaag agatcgcccg gcacgtagat catctcacgc agaataccgt tgcacggcat
     4321 gtgtacgcga tggtagtcac gcggggagag gtaagtggtc acaaacgtac cgttgcggaa
     4381 caggtccgcc atcagatagt tgcctgccag cagggcttcg aggctgtagt tgtggccttt
     4441 ggcttgcagg attttatctt cttcgatttt acccaactgg ctgataacgc catcggcagg
     4501 catgaccagt acattcggat cggtatcgat tgggcgtact tcgtcacgca gcggacggac
     4561 aaagaattcg ttaaaggtgc ggtagctggc ggtgtccggc ttttgcgcct ctttcatgtc
     4621 gaccttgtag tatttaacga acagatcgat aaccagtttt gtcagccatc ctgcccgctt
     4681 gcttgcgccc caacccgcca ggcgagtaag ccatagtttc ggcagaatgt actgtagcga
     4741 aagtttaaat gaatttaaca aggtagcctc caggccattg ttttgtcgtt cctgatccgg
     4801 ccaacatgcc ggatcctgaa aaaaagggga cgattctaac gacggttagc ttaattgtca
     4861 gtcatccgta tcagaaaagt ttttacgcgt ttttacctgc gccatgcttt ccagaatacg
     4921 gtgatagttt tcgaaacggg tttccgcgat tttcccttcc tcaaccgctt cccggatagc
     4981 gcagcccgga tcggtatcgt gtttgcaatc gcgatattta cacagaccta aatagtcatg
     5041 gaattcgaca aagccctgag tgatttgttc cggctccagg tgccagaggc cgaactcacg
     5101 cacaccaggg gaatcaatca catcaccgcc gtgcgggaag tgatacagcc gagcggcggt
     5161 cgtggtgtgc tgaccgagcc ccgagttgtc agagacatcg ttggtcagga tctctttttg
     5221 cagccccagc aactcattca gcaggctgga tttgccgacg ccagactgcc cggcaaaaat
     5281 gctgatgcgc ccggtcaacg cctcttccag cggttttagc ccatcctgag tatggctgga
     5341 aaccatcaat acgcgataac cgatattgcg gtagatatcc atctgctcgt tgacgaacgc
     5401 catgccttcg tcgtccagca ggtctatctt gttgagcaca ataatcggct caatctgcaa
     5461 ggtttcgcag gccaccaggt aacggtcgat aatattgagt gacagctccg gcaaaatggc
     5521 ggagacaatg acaatctggt cgatgttggc ggcaataggt tttacgccgt cgtagaaatc
     5581 cggacgcgtc aacaccgagg tacgctcatg caccgcttcc acgatccctt tgacatttac
     5641 gccttccgcc gccggtttac ccggacgcca gactacacgg tcgccggtca ccagcgaacg
     5701 gatggtacgg cgaatattgc agcggtgaac gtcgccatcg gcggattcca catcagcgtg
     5761 cataccaaag cggctgatga cgataccttc atcaggctcg ccaaacagat tgtcgtcgta
     5821 gtcgggcttc tccttagacg ttttaagacg acgctggtga ttggcgttca cgcggcgctg
     5881 ctggcctttg gagagtttat ttttactcaa tcgtacagac tcctggtcgc ccctgatggg
     5941 caaaacatct atgatacacg caattgtgga tcaatatagt cactgtgaat gggtggaaaa
     6001 tagcatgagt gccaatgaaa acaacctgat ttggatcgat cttgagatga ctggtctgga
     6061 tcccgagcgc gatcgcatta ttgagattgc cacgctggtg accgatgcca acctgaatat
     6121 tctggcagaa gggccgacca ttgcagtaca tcagtccgat gaacagctgg cgctgatgga
     6181 tgactggaac gtgcgcaccc ataccgccag cgggctggta gagcgcgtga aagcgagcac
     6241 gatgggcgat cgggaagctg aactggcaac gctcgaattc ttaaaacagt gggtgcctgc
     6301 gggaaaatcg ccgatttgcg gtaacagcat cggacaggac cgtcgtttcc tgtttaaata
     6361 catgccggag ctggaagcct acttccacta ccgttatctc gatgtcagca ccctgaaaga
     6421 gctggcgcgc cgctggaagc cggaaattct ggatagtttt accaagcagg ggacgcatca
     6481 ggcgatggat gatatccgtg aatcggtggc ggagctggct tactaccgcg agcattttat
     6541 caagctgtaa aatttttcct ggtcacgtaa gcgccggaat ccacttgcgg cggcgtgatt
     6601 ttgacgctaa attgaacgtc ttgctgataa tttcagcact tgagataaaa acgcaaaaaa
     6661 aacttttttg gggggttgca gagggaaaga tttctcgtat aatacgcctc ccgtaacgac
     6721 gcagaaatgc gaaaattacg aaagcaaaat taagtagtac gcgggaatag ctcagttggt
     6781 agagcacgac cttgccaagg tcggggtcgc gagttcgagt ctcgtttccc gctccaaaat
     6841 ttgaaaagt
//
LOCUS       DADMJB010000195         6590 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.198, whole genome shotgun sequence.
ACCESSION   DADMJB010000195 DADMJB010000000
VERSION     DADMJB010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6590)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6590)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6590
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.198"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            18..173
                     /locus_tag="JN078_003715"
                     /pseudo
     CDS             18..173
                     /locus_tag="JN078_003715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706342.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter"
     gene            166..1947
                     /locus_tag="JN078_003716"
     CDS             166..1947
                     /locus_tag="JN078_003716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SmdB family multidrug efflux ABC transporter
                     permease/ATP-binding protein"
                     /protein_id="HAY9042754.1"
                     /translation="MRSFSQLWPTLKRLLAYGSPWRKPLGIAVLMMWVAAAAEVSGPL
                     LISYFIDNMVAKNNLPLKMVAGLAAAYVGLQLFAAGLHYAQSLLFNRAAVGVVQQLRT
                     DVMDAALRQPLSEFDTQPVGQVISRVTNDTEVIRDLYVTVVATVLRSAALVGAMLVAM
                     FSLDWRMALVAIMIFPVVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEIINGMSVIQ
                     QFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSSLILCGLLMLFGFSAS
                     GTIEVGVLYAFISYLGRLNEPLIELTTQQAMLQQAVVAGERVFELMDGPRQQYGNDDR
                     PLQSGTIEVDNVSFAYRDDNLVLKNINLSVPSRNFVALVGHTGSGKSTLASLLMGYYP
                     LTEGEIRLDGRPLSSLSHSALRQGVAMVQQDPVVLADTFLANVTLGRDISEERVWQAL
                     ETVQLAELARSMSDGIYTPLGEQGNNLSVGQKQLLALARVLVETPQILILDEATASID
                     SGTEQAIQHALAAVREHTTLVVIAHRLSTIVDADTILVLHRGQAVEQGTHQQLLAAQG
                     RYWQMYQLQLAGEELAASVREEESLSA"
     gene            2128..2466
                     /gene="glnK"
                     /locus_tag="JN078_003717"
     CDS             2128..2466
                     /gene="glnK"
                     /locus_tag="JN078_003717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HAY9042755.1"
                     /translation="MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAE
                     LYRGAEYSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRI
                     RTGEADEAAL"
     gene            2496..3782
                     /gene="amtB"
                     /locus_tag="JN078_003718"
     CDS             2496..3782
                     /gene="amtB"
                     /locus_tag="JN078_003718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter AmtB"
                     /protein_id="HAY9042756.1"
                     /translation="MKIATIKTGLASLAMLPGLVMAAPAVADKADNAFMMICTALVLF
                     MTIPGIALFYGGLIRGKNVLSMLMQVTVTFALVCILWVVYGYSLAFGEGNNFFGNVNW
                     LMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTL
                     SYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPH
                     NLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRG
                     KPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPC
                     DVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA
                     FIGYKLADLTVGLRVPEEQELEGLDVNSHGENAYNA"
     gene            complement(3831..4691)
                     /gene="tesB"
                     /locus_tag="JN078_003719"
     CDS             complement(3831..4691)
                     /gene="tesB"
                     /locus_tag="JN078_003719"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase II"
                     /protein_id="HAY9042757.1"
                     /translation="MSQALKNLLALLNLEKIEAGLFRGQSEDLGLRQVFGGQVVGQAL
                     YAAKETVPEERLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIF
                     YMTASFQAPEAGFEHQKTMPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEV
                     RPVEFHNPLKGHVAEPHRQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIG
                     FLEPGIQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVAST
                     VQEGVMRNHN"
     gene            4909..5481
                     /locus_tag="JN078_003720"
     CDS             4909..5481
                     /locus_tag="JN078_003720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HAY9042758.1"
                     /translation="MKLVHMASGLAVAIALAACADKSADIQTPAPAANTSISATQQPA
                     IQQPNVSGTVWIRQKVALPPDAVLTVTLSDASLADAPSKVLAQKAVRTEGKQSPFSFV
                     LPFNPADVQPNARILLSAAITVNDKLVFITDTVQPVINKGGTKADLTLVPVQQTAVPV
                     QASGGATTTVPSTSPTQVNPSSAVPAPTQY"
     gene            complement(5512..5823)
                     /locus_tag="JN078_003721"
     CDS             complement(5512..5823)
                     /locus_tag="JN078_003721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706349.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HAY9042759.1"
                     /translation="MEKEDSFPQRVWQIVAAIPEGYVTTYGDVAKLAGSPRAARQVGG
                     VLKRLPEGSTLPWHRVVNRHGTISLTGPDLQRQRQALLAEGVMVSGSGQIDLQRYRWN
                     Y"
     gene            5986..6082
                     /gene="ffs"
                     /locus_tag="JN078_003722"
     ncRNA           5986..6082
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="JN078_003722"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            6202..6555
                     /locus_tag="JN078_003723"
     CDS             6202..6555
                     /locus_tag="JN078_003723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1428 domain-containing protein"
                     /protein_id="HAY9042760.1"
                     /translation="MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWAS
                     DVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFD
                     GKRMIYGGFESIIDE"
BASE COUNT         1444 a         1636 c         1916 g         1594 t
ORIGIN      
        1 gggatgcgtt catataaatt attgtgatgc agcacggaca tatcgcccag cgtggcaatc
       61 atgatgagtt ggcgcaacaa agcggctggt atcgcgatat gtatcgctat caacaactgg
      121 aggcggcgct cgacgacgct ccggaaattc gcgaggaggc cgtcgatgcg tagttttagc
      181 caactgtggc cgactctcaa gcgtctgtta gcgtacggtt cgccgtggcg taaaccgctg
      241 gggattgcgg tcctgatgat gtgggttgcg gcagcggcag aagtcagtgg gccgctgctt
      301 atcagctatt ttatcgacaa tatggtagcg aaaaataacc tgccgttgaa aatggttgca
      361 gggctggctg cggcgtatgt tgggctacaa ctgtttgccg ccgggctaca ttacgcgcag
      421 tcgctgctgt ttaatcgggc ggcagtaggc gtagtgcaac agttgcgtac cgacgtgatg
      481 gatgccgcat tgcgccagcc attaagcgag tttgataccc aacccgtcgg gcaggtgatt
      541 tcccgcgtca ctaatgacac tgaagtgatc cgcgatctct acgttaccgt agtggcaact
      601 gtcctgcgta gcgccgcact ggtgggcgcg atgctggtgg cgatgttcag cctcgactgg
      661 cgaatggcgc tggtggcgat aatgattttc ccggtggtgc tggtggtaat ggtgatatac
      721 cagcgttaca gcacgccgat tgtccgtcgt gtgcgcgcct atctggcgga tatcaacgac
      781 ggctttaacg aaatcatcaa tggcatgagc gttatccagc agttccgtca gcaggcgcga
      841 tttggcgaac gtatggggga ggccagtcgt tcacactata tggccaggat gcaaaccctg
      901 cgcctcgacg gttttctgct gcgtccgctg ctgagtctgt tttcatcgct cattctttgt
      961 ggcttgttga tgctgtttgg cttctccgct agcggcacca ttgaagtagg cgtgctgtat
     1021 gcgtttatca gctatcttgg gcgacttaac gaacccttaa tcgaactgac cacgcaacag
     1081 gcgatgctgc aacaggctgt tgttgctggt gagcgcgtgt ttgaactgat ggacggaccg
     1141 cgccagcaat atggcaatga tgatcgcccg ttacagagtg gcaccatcga agtcgataac
     1201 gtgtcatttg cttatcgcga tgacaatctg gtgctaaaga acattaatct ctctgtgcct
     1261 tcgcgtaact ttgtggcact ggtcgggcat accggcagtg gcaaaagcac cctcgccagt
     1321 ttattgatgg gctattaccc gctaacggaa ggtgagattc gccttgatgg tcgtccatta
     1381 agttcgctaa gtcacagcgc gctgcgccag ggcgtggcaa tggtgcagca agatccggtg
     1441 gtgctggcgg ataccttcct cgccaacgtg acgctggggc gtgatatctc cgaagaacgc
     1501 gtctggcagg cgctggaaac cgtgcaactg gcggagctgg cgcgcagcat gagtgatggt
     1561 atttatacgc cgctgggcga gcaggggaat aatctctccg tcgggcaaaa gcaactgctg
     1621 gcactggcac gcgtgttggt ggagacgccg caaatcctga tccttgatga ggcaaccgcc
     1681 agcattgact ccggtactga acaggcgatt caacatgctc tggcggctgt gcgtgaacat
     1741 accacgctgg tggtgattgc tcaccgctta tcgaccattg ttgatgccga caccattctg
     1801 gtgcttcatc gtgggcaagc cgtggagcag ggcactcacc agcaactgct ggcggcccag
     1861 ggacgctact ggcagatgta tcaactgcaa cttgcgggcg aagagctggc agccagcgtg
     1921 cgtgaagaag aatcattgag cgcctgaata gcgcaatatt tcatcgttgg tgcaaaaatg
     1981 taacgcactg tgcactgtca tagtgcgttt tcattttcaa tcttcttaac ttcctgctct
     2041 ctttctcgtt tttcatttct ggcacaccgc ttgcaatacc ttcttcgtgt agcagaacca
     2101 ttaccgaatt ctgactggag gggatctatg aagctggtga ccgtgataat caaaccattc
     2161 aagctggaag acgttcgtga agcgttatct tccattggta ttcagggcct gaccgtcacc
     2221 gaagtgaaag gtttcgggcg tcagaaaggg catgccgagc tgtaccgggg ggcggaatac
     2281 agcgtcaact tcctgccaaa agtaaaaatt gatgtggcaa ttgctgatga ccaactcgat
     2341 gaagtgatcg atatcgtcag taaggcggct tacaccggaa aaattggcga cggcaaaatc
     2401 ttcgtcgctg aattgcaacg cgtcattcgt attcgtaccg gcgaagccga cgaagcggcg
     2461 ctgtaatctc tggcacacag caacaggaac gaaaaatgaa gatagcgacg ataaaaactg
     2521 ggcttgcttc actggcgatg ctgccgggac tggtaatggc tgcacctgcg gtggccgata
     2581 aagccgacaa tgcgtttatg atgatttgta ctgcgctggt gctgtttatg actattccgg
     2641 ggattgccct gttttacggt gggttgattc gcggcaaaaa cgtgctgtcg atgctgatgc
     2701 aggtgacggt gacgtttgca ctggtctgta ttctctgggt ggtttacggt tactcgctgg
     2761 cgtttggtga gggtaacaac ttcttcggca acgttaactg gttgatgctg aaaaacatcg
     2821 aactgacggc ggtgatgggc agcatttatc agtatatcca cgtagcgttt cagggatcgt
     2881 ttgcctgcat taccgtaggc ttgatagttg gggcgctggc ggaacgaatc cgcttctcag
     2941 ctgtgttgat tttcgtggtg gtatggctga cgctctctta cattccgatt gcgcatatgg
     3001 tgtggggcgg cggtttgctg gcttctcacg gtgcactgga tttcgcgggt ggcacagtgg
     3061 tgcacattaa cgccgcaatc gccggtctgg tgggcgcgta tctgataggc aaacgcgtgg
     3121 gcttcggtaa agaggcgttt aaaccgcaca acctgccgat ggtcttcacc gggactgcca
     3181 ttctctatat cggttggttt ggctttaacg ccgggtcagc gggcacggcg aatgaaatcg
     3241 cggcactggc atttgtgaat actgtggtcg caacggcggc ggcaattctt ggctggatct
     3301 tcggtgaatg ggcgctgcgt ggtaagcctt cactgctggg ggcgtgttct ggcgcgattg
     3361 ccggtctggt cggcgtgacg ccagcgtgcg gctacattgg ggttggcggc gcgttgatta
     3421 tcggcgtggt agctggtctg gcgggcttgt ggggcgttac catgctcaaa cgcttgctgc
     3481 gggtggatga tccctgcgat gtcttcggtg tgcacggcgt ttgtggcatt gtcggctgta
     3541 tcatgaccgg gatttttgcc gccagctcgc tgggcggcgt gggcttcgct gaaggtgtga
     3601 cgatgggtca tcagttgctg gtacagctgg aaagcatcgc cattacgatc gtctggtccg
     3661 gtgtggtggc atttattggc tacaaattgg cggatctgac ggttggtctg cgtgtaccgg
     3721 aagagcagga gctagaaggg ctggatgtca acagtcacgg cgagaatgcc tataacgcgt
     3781 aacaagcact gcaaaaaaca gccggacggt tttcacctcc ggctattttt ttaattgtga
     3841 ttacgcatca ccccttcctg aacggtcgag gcaaccagta cgccgtcctg ggtataaaac
     3901 tcaccgcgca caaagccacg tgcgctggac gccgaggtgc tctccacgct atacagcagc
     3961 cattcattca aattaaacgg gcgatggaac cacatggaat ggtcaatggt ggcaatctga
     4021 atccccggtt cgagaaaacc gatgccgtgc ggctgtagag ctaccggcag gaagttaaga
     4081 tcagaagcgt aaccgagcag atactgatga acgcgcaggt catccggcac gctaccattt
     4141 gcgcggatcc acacctgacg atgtggttct gcgacgtgac ctttcagtgg gttatgaaac
     4201 tccaccggac ggacttccag cggacgatcg cagatgaatt tatctttaag cactggcggc
     4261 agcaggtgcg ccagcgattg ggcgatttgc gtttccgaag gcaggccatc aggcgctggc
     4321 gcggacggca ttgttttttg atgttcgaaa cccgcttctg gtgcctggaa agaggccgtc
     4381 atataaaaaa tcggtttgcc gttttgaata gcagcaaccc ggcgggcgct gaagctgtta
     4441 ccatcacgca gcgtttcgac atcataaata atcggtttct tactatcgcc tgggcgaaga
     4501 aagtagctgt gaaacgaatg taccagccgc tcttccggga cggtctcttt tgcagcatac
     4561 aaggcctgac ccacgacctg gccgccaaac acctggcgta aacctaaatc ttcactctgg
     4621 ccgcgaaaga gtcctgcctc aattttttcc agatttaaca atgccagtaa attttttagc
     4681 gcctgactca tataactctc cagtaacaaa gctgccgcag caagccaaag tgagttgagt
     4741 ataacgcaaa tttgccactg gtccgatggg tgcaataatc tgaattacgg gctaattaca
     4801 ggcagaaatg cgtgatgtgt gccacactta ttgacgttac tattttgtta accactcttc
     4861 cggcgaggaa agttagcccg ctggtgcatt gataataagg agaaatgaat gaaactcgtg
     4921 cacatggcca gtggtttagc ggttgcgatt gcgttggcgg cttgcgcaga taaaagcgcg
     4981 gatattcaga cgccagcccc ggctgcaaat acgtctattt cagcaacaca acaacctgct
     5041 atccagcaac cgaatgtctc cggtaccgtc tggatccggc agaaagtcgc actgccgcct
     5101 gatgctgtgc tgaccgtgac actttctgac gcgtcgttag ccgatgcacc gtcaaaagtg
     5161 ctggcgcaga aagcggtgcg taccgaaggt aaacagtcac cattcagctt tgttctgcca
     5221 tttaacccgg cagatgttca gccgaacgcg cgtattctgt tgagtgcggc gattaccgtg
     5281 aatgacaaac tggtatttat taccgatacc gttcagccgg tgatcaacaa gggcggaact
     5341 aaagccgacc tgacattggt gccggtgcag caaaccgccg tgccggttca ggccagcggt
     5401 ggtgcaacga ctaccgtacc ttcgacttca ccaactcagg tgaatccgtc ttcggcagtt
     5461 ccagctccta cgcaatatta agcgacgtta accctctccg cccggagagg gttagtagtt
     5521 ccagcgataa cgctgcaagt cgatttgccc gcttcccgat accatcacac cttctgccag
     5581 taatgcctgt cgctgacgct gtaaatccgg tccggttagc gaaattgtgc cgtggcgatt
     5641 aaccacccgg tgccagggta aggtgctgcc ttcagggaga cgctttaaca caccgcccac
     5701 ctggcgcgcg gcgcggggcg atcccgccag tttcgccaca tcaccgtaag tggtgacata
     5761 gccttcggga atagcggcga cgatttgcca gacgcgttgg ggaaatgaat cttctttttc
     5821 catcttttct tcctgaggta atttttcagc ataatctgga aaaacgcccg agtgaagtcg
     5881 cattgcgcaa gaaaccagca tctggcacgc gatgggttgc aattagccgg ggcagcagtg
     5941 ataatgtgcc tgcgcgttgg ttctcaacgc tctcaatggg ggctctgttg gttctcccgc
     6001 aacgctactc tgtttaccag gtcaggtccg gaaggaagca gccaaggcag atgacgcgtg
     6061 tgccgggatg tagctggcag ggcccccacc catttctgcc tcccaccgtt tcgtcaaaaa
     6121 aaaccaacat ggctaaactt taaccacaac tgacgtcgca agaattgtct ggctgcgcag
     6181 tacgcttcgg aggtatgtct gatgaagtat gttgatggtt ttgtggttgc cgttcctgcc
     6241 gataaaaagg atgcctatcg ggaaatggcc gctaaggctg cgccattgtt taaagagttt
     6301 ggcgcgcttc gtattgtcga atgctgggcc agcgatgtac cggatggcaa agtgaccgat
     6361 tttcgtatgg cggtgaaagc ggaagagaat gaagaggttg tctttagctg gattgaatac
     6421 ccttcaaaag aggtccgcga cgctgctaat caaaagatga tgtcggaccc acggatgaaa
     6481 gagttcggcg agtccatgcc gtttgacggc aagcgaatga tctatggcgg attcgagtca
     6541 atcatcgacg aataggtagc gtgacgggct gtgcggcgtg ccgtcagccc
//
LOCUS       DADMJB010000196         6389 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.199, whole genome shotgun sequence.
ACCESSION   DADMJB010000196 DADMJB010000000
VERSION     DADMJB010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6389)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6389)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6389
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.199"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..205)
                     /locus_tag="JN078_003724"
     CDS             complement(<1..205)
                     /locus_tag="JN078_003724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311770.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="knotted carbamoyltransferase YgeW"
                     /protein_id="HAY9042761.1"
                     /translation="MKTVNELIKDINSLTSHLHEKDFLLTWEQTPDELKQVLDVAAAL
                     KALRAENISTKVFNSGLGISVFRD"
     gene            684..2461
                     /locus_tag="JN078_003725"
                     /pseudo
     CDS             684..2461
                     /locus_tag="JN078_003725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417345.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
     gene            complement(2501..2980)
                     /gene="xdhC"
                     /locus_tag="JN078_003726"
     CDS             complement(2501..2980)
                     /gene="xdhC"
                     /locus_tag="JN078_003726"
                     /EC_number="1.17.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase iron sulfur-binding
                     subunit XdhC"
                     /protein_id="HAY9042762.1"
                     /translation="MNHSETITIECTINGMPFQLHAAPGTPLSELLREQGLLSVKQGC
                     CVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAKGGKLSHVQQAYAKSGAVQ
                     CGFCTPGLIMATTAMLAKPREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLDCEKTK"
     gene            complement(2977..3855)
                     /gene="xdhB"
                     /locus_tag="JN078_003727"
     CDS             complement(2977..3855)
                     /gene="xdhB"
                     /locus_tag="JN078_003727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase FAD-binding subunit XdhB"
                     /protein_id="HAY9042763.1"
                     /translation="MFDFASYHRAATLADAINLLANNPQAKLLAGGTDVLIQLHHHND
                     RYRHIVDIHNLAELRGITLAEDGSLRIGSATTFTQLIEDPITQRHLPALCAAAMSIAG
                     LQIRNVATYGGNICNGATSADSATPTLIYDAKLEIHSPRGVRFVPINGFHTGPGKVSL
                     EHDEILVAFHFPPQPKEHAGSAHFKYAMRDAMDISTIGCAAHCRLDNGNFSELRLAFG
                     VAAPTPIRCQHAEQTAQNAPLNLQTLEAISESVLQDVAPRSSWRASKEFRLHLIQMMT
                     KKVISEAVAAAGGKLQ"
     gene            complement(3866..6163)
                     /gene="xdhA"
                     /locus_tag="JN078_003728"
     CDS             complement(3866..6163)
                     /gene="xdhA"
                     /locus_tag="JN078_003728"
                     /EC_number="1.17.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase molybdenum-binding
                     subunit XdhA"
                     /protein_id="HAY9042764.1"
                     /translation="MEAREATATGESCMRVDAIAKVTGRARYTDDYVMAGMCYAKYVR
                     SPIAHGYAVSINDEQARSLPGVLAIFTWEDVPDIPFATAGHAWTLDENKRDTADRALL
                     TRHVRHHGDAIAIVVARDELTAEKAAQLVSIEWQELPVITTPEAALAEDAAPIHNGGN
                     LLKQSTMSTGNVQQTIDAADYQVQGHYQTPVIQHCHMESVTSLAWMEDDSRITIVSST
                     QIPHIVRRVVGQALDIPWSCVRVIKPFVGGGFGNKQDVLEEPMAAFLTSKLGGIPVKV
                     SLSREECFLATRTRHAFTIDGQMGVNRDGTLKGYSLDVLSNTGAYASHGHSIASAGGN
                     KVAYLYPRCAYAYSSKTCYTNLPSAGAMRGYGAPQVVFAVESMLDDAATALGIDPVEI
                     RLRNAAREGDANPLTGKRIYSAGLPECLEKGRKIFEWEKRRAECQNQQGNLRRGVGVA
                     CFSYTSNTWPVGVEIAGARLLMNQDGTINVQSGATEIGQGADTVFSQMVAETVGVPVS
                     DVRVISTQDTDVTPFDPGTFASRQSYVAAPALRSAALLLKEKIIAHAAVMLHQSAMNL
                     TLIKGHIVLVERPEEPLMSLKDLAMDAFYHPERGGQLSAESSIKTTTNPPAFGCTFVD
                     LTVDIALCKVTINRILNVHDSGHILNPLLAEGQVHGGMGMGIGWALFEEMIIDAKSGV
                     VRNPNLLDYKMPTMPDLPQLESAFVEINEPQSAYGHKSLGEPPIIPVAAAIRNAVKMA
                     TGVAINTLPLTPKRLYEEFHLAGLI"
BASE COUNT         1595 a         1511 c         1614 g         1669 t
ORIGIN      
        1 tgtcgcggaa tacggaaata cctaatccac tattaaagac tttggttgag atgttttcag
       61 cacgcagtgc ttttaatgct gcggcaacgt ccagtacttg tttcagttca tctggcgtct
      121 gttcccacgt taacaaaaaa tctttctcgt gaaggtgaga ggtcagcgaa ttgatatcct
      181 taatcagctc attaacagtt ttcatcataa agtcccggta gtggaatgac aggcaaagtg
      241 gtttatttca ctgtgacttg ccaaagtgat tggtgttttc acagctatac ctgggactaa
      301 caataagtgt gccagaatta tccgcgcggc tgcaaaagac taatttgacg gataatgtgt
      361 ggggttgatc acaaattgat gccagcttct ggttgtttgt aaaatacgaa aacgtttggc
      421 tttttttatc gcgttattta tttgctgcta agtatcagaa ataagataaa ggggcaggct
      481 atctctcttc agtttgataa actcaccgcc gtaattctca tattgatata gaaatgtgat
      541 atctcttcca taatttcatt agaaaatgat aaaaatctta tgtttttatc aaagccaatt
      601 tcgcctgagt taatatcatc atgatctgtg aaccatcaac gtcttcaatg atcgactttt
      661 aagtaagtct ggaaggtaaa gctatggagc ttgctactac gcagtcagta ttgatgcaaa
      721 ttcaaccgac aattcagcgt tttgccagaa tgcttgccag cgttttgcag cttgaggttg
      781 agatcgttga tgaaaacttg tgtcgcgtcg ccggaacggg cgcgtatggg aagtttcttg
      841 gtcgccagtt gagcggcaac tcacgcctgc tccgccacgt cctggaaacg aaaactgaaa
      901 aagttgtgac acagtctcgc ttcgatcccc tttgcgaagg ttgcgatagt aaagaaaatt
      961 gccgtgaaaa agcatttctg ggtacgcctg tcattttaca ggatcgttgt gttggggtga
     1021 taagtttgat tgccgttacc cacgagcaac aagagcatat cagtgataat ttacgcgaat
     1081 tttctgatta tgttcgccat atatccacca tttttgtttc gaaacttctg gaggatcagg
     1141 ggccaggaga taacatcagt aaaatattcg cgaccatgat cgataatatg gatcagggcg
     1201 tattagttgt tgatgatgaa agtcgggttc agtttgttaa tcagactgcc ttaaaaacac
     1261 ttggtgttgt acaaaataat attattggga aacctatccg tttcagacca ttaacatttg
     1321 agagtaattt tactcatgga catatgcagc atattgtttc gtgggacgat aaaagtgaat
     1381 taatcattgg tcaattgcat aacattcagg gccgacaatt atttttaatg gcatttcacc
     1441 aatcgcatac cagtttttct gtagcaaatg cacctgatga accacatatt gaacaattgg
     1501 ttggcgagtg ccgtgttatg cggcaattaa aacgactcat tagccgtatt gcacccagcc
     1561 catccagcgt tatggtggtt ggtgaaagcg gcacgggtaa agaagtcgtc gcccgagcaa
     1621 tccataagtt gagcggaaga cggaataaac cctttattgc tatcaactgt gccgcgattc
     1681 cggagcagct tctggaaagc gaactgttcg gttatgttaa aggcgcattt actggcgctt
     1741 ctgccaacgg taaaacaggg ttgattcagg cggcgaatac gggcacgctg tttctcgatg
     1801 aaataggtga tatgccatta atgttgcagg ctaaattact gcgcgctatt gaggcgcgtg
     1861 aaattctgcc gattggtgcc agtagcccaa tacaagtcga cattcgcatc atttctgcaa
     1921 ctaatcagaa tttggcccag ttcattgccg aaggtaaatt ccgcgaagat ctcttctacc
     1981 gacttaatgt tatcccgata actctgccac cgctgcgtga acgtcaggaa gatattgaac
     2041 attggtgcat tactttttac atctgcatac ccgtcgtctg ggatcggttt atcctggcat
     2101 tgctcccgat gtcgtcgaaa tattgcgtaa gcatcgttgg cccggaaacc tgcgcgagtt
     2161 aagcaatttg atggaatatc tggttaacgt agttccttca ggtgaagtta tcgacagcac
     2221 gctattgccg ccaaatctgc tgaataatgg cacaacggag caaagtgatg taacagaggt
     2281 cagtgaggcg cacctgtcac tcgatgatgc gggcggcacg gcgctggagg agatggaaaa
     2341 gcaaatgatc cgcgaggcgc tttcacgtca taacagcaag aagcaagttg ctgatgaact
     2401 gggcatcggc attgctacgc tctatcgcaa gattaagaaa tatgagttgt taaacacata
     2461 acctcagtga atccggcctg aattcaggcc ggatatcctt ttacttcgtt ttctcgcaat
     2521 ccagaactgt atttacaatc atctgatacc ccgtgcagcg acaaagattt cccgccagtc
     2581 cgcgacgaat ttccgtaatg gttaatggct tctcgcgtgg tttcgccagc attgccgtgg
     2641 tagccataat caggccaggc gtacaaaacc cgcactgcac tgcgccggat ttcgcataag
     2701 cctgctgaac atgagaaagt tttccgcctt tcgcttcacc ttccagcgtg cggatctctt
     2761 ttccttcagc ccaggcggca aggtataagc aactgtctat tgctgtgccg tcgaccaaca
     2821 ccgtacaggc accacattca cccacgcagc acccttgttt gacacttagc agtccttgtt
     2881 cgcggagtaa ttccgagagc ggcgtgcctg gtgcggcgtg aagctgaaaa ggcatcccgt
     2941 taatggtgca ttcgatggta attgtttcgc tgtgattcat tgcaattttc cccccgccgc
     3001 ggcgacggct tcgctaatca cttttttggt catcatctgg atgagatgca gacgaaactc
     3061 tttactggcc cgccatgaag aacgcggggc gacatcttgc aggacagatt cgctgatagc
     3121 ttccagcgtt tgcaggttta atggcgcatt ttgtgcagtc tgttcggcat gttggcagcg
     3181 aatcggcgtt ggcgcggcaa caccaaatgc caggcgtaat tcgctgaaat tgccgttatc
     3241 cagtcggcaa tgtgcggcgc agccaatcgt tgaaatatcc attgcgtcgc gcatggcata
     3301 tttaaaatgc gcgctgcccg cgtgttcttt cggctgtggc ggaaaatgaa aggcgacgag
     3361 gatttcgtca tgctcaagag acactttgcc cggcccggtg tgaaagccat taatcgggac
     3421 gaaacgaaca ccgcgcgggg agtggatctc cagtttcgcg tcataaatta gcgttggcgt
     3481 ggcagaatct gcgctggtgg caccgttgca aatatttcca ccgtaggtag cgacgttacg
     3541 gatctgcagt ccagcaatgg acatggccgc agcacataac gccgggagat gacgttgagt
     3601 tataggatct tctattagct gggtaaatgt cgttgcagag ccgatacgta gcgagccatc
     3661 ttccgccagc gtaattcccc gcagctccgc cagattatga atatcaacaa tatggcgata
     3721 acggtcattg tgatggtgga gctgaatcag tacgtcagtg ccaccggcga gcagtttggc
     3781 ctgcgggttg ttagccagca ggttgatggc atcggcaagg gttgctgcgc gatggtaaga
     3841 agcaaaatca aacatgatgt tatcctcaaa tcaatcctgc cagatggaac tcttcatata
     3901 accgttttgg cgtcagcggc agtgtattga ttgcaacacc ggtagccatc ttcaccgcgt
     3961 tacgaatagc agcggcaaca ggaattattg gtggctcacc cagtgactta tgtccgtatg
     4021 cggattgcgg ctcattgatt tcgacgaacg cgctttccag ttgtggcaga tccggcatgg
     4081 tcggcatttt gtaatccagc agattggggt tacggaccac gccgctttta gcatcgatga
     4141 tcatctcttc aaatagcgcc cagccaatgc ccattcccat tccgccgtgt acctgacctt
     4201 ctgccagcag tggattaaga atatgccctg aatcatgaac gttgaggatg cggttgatgg
     4261 tgactttgca cagcgcaata tcgaccgtca gatcaacaaa ggtacagcca aacgccggtg
     4321 ggttagtggt ggttttgatg gagctttcag cagagagctg cccgccgcgt tcagggtggt
     4381 agaaagcgtc catcgccaaa tcttttaacg acattaacgg ctcttccggt cgttcaacca
     4441 gcacgatatg gccttttatc agggtcagat tcatcgctga ctgatgtagc atgactgcgg
     4501 cgtgagcgat gattttctct tttaataata gtgccgcact gcgcagcgca ggcgcggcaa
     4561 catagctctg gcgtgaggca aatgtgccgg gatcgaacgg cgtaacgtcg gtatcttgag
     4621 ttgaaataac gcgaacgtcg ctgaccggaa cccccacggt ttctgccacc atttgcgaga
     4681 agacggtgtc ggcaccctga ccgatttccg tcgcgccgct ttgcacgttg atggttccat
     4741 cctgattcat cagaaggcgc gcgcctgcta tttctacgcc gacaggccag gtgttagagg
     4801 tgtagctaaa acaggcgacg ccaacgccgc ggcgcaaatt gccttgctgg ttctggcatt
     4861 ctgcacggcg tttttcccat tcaaagattt tccggccttt ttcaagacac tccggcaacc
     4921 ctgcgctgta aatacgtttg cccgtgagcg gattagcatc tccttcgcgg gcggcgttgc
     4981 gtaaacgaat ttcaacagga tcaataccta acgctgtcgc ggcgtcatca agcatagact
     5041 caacggcaaa tacgacttgt ggcgcgccat aaccacgcat cgcaccagcc gaggggaggt
     5101 tggtatagca ggtctttgaa ctgtaagcgt aggcacaacg aggataaagg taagcgactt
     5161 tattcccccc cgcagaagcg atggagtgcc cgtgagatgc ataagcgccg gtgttagaca
     5221 gaacatccag actataacct ttcaatgttc cgtcgcggtt cacgcccatt tgcccgtcaa
     5281 tggtaaaagc gtggcgggta cgggttgcga ggaaacactc ttcacggcta agggaaactt
     5341 tcaccggaat gccgccaagc ttgctggtca ggaatgccgc cattggctct tccagtacat
     5401 cctgtttatt accaaaaccg ccaccgacaa atggtttgat gactcgtacg catgaccagg
     5461 gaatatccag cgcctgacca accacgcggc gaacaatgtg cgggatctgg gtgctggaaa
     5521 cgatggtaat tcgcgagtca tcctccatcc acgccagcga tgttacgctt tccatgtgac
     5581 aatgttgaat aacgggggtc tgatagtgcc cctgtacctg gtagtcggcg gcatcgattg
     5641 tttgttggac attacccgtc gacatcgtgc tttgtttcag taaattgcca ccgttatgga
     5701 ttggtgcagc gtcttctgcc agcgccgctt ctggcgtggt gataacgggt aattcttgcc
     5761 actcaatgct gaccaattgc gccgcttttt ctgccgtgag ttcatcgcgg gccacgacga
     5821 tggcaatggc gtcaccatga tgacgaacat ggcgagttag cagtgcgcga tcggcggtat
     5881 cgcgcttgtt ttcgtcaagt gtccaggcat gcccagctgt agcgaatgga atatcaggca
     5941 catcttccca ggtaaaaatc gccagtacgc ccggcaaact tctggcttgt tcatcattaa
     6001 tacttacggc ataaccatgt gcgatagggc tacgtacata tttcgcataa cacatgcccg
     6061 ccataacata atcgtcagta tatcgtgccc gcccggtgac cttagcaatg gcatcgacgc
     6121 gcatgcatga ttcacccgta gcggttgctt cccgcgcttc catagaaatc ccctcgattt
     6181 gaacatttgg ttcttatggc aaagatttag tctaagcagg caagatttac gccagaaacg
     6241 acgataagcg ttaggggagg taggaagtgt gatgacgtta aaaaaacaca gatatgatac
     6301 gaaacaggag tctgaatagg ggcagtgata cgtatcaata tgagtggcga taaaatcaat
     6361 gtgataaatt gggattatta cgcatcagg
//
LOCUS       DADMJB010000197         6337 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.200, whole genome shotgun sequence.
ACCESSION   DADMJB010000197 DADMJB010000000
VERSION     DADMJB010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6337
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.200"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            30..152
                     /locus_tag="JN078_003729"
     CDS             30..152
                     /locus_tag="JN078_003729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001124879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HAY9042765.1"
                     /translation="MPKKMRTTRNLLLMATLLGSALFARAADKEMTIGAIYLDT"
     gene            168..1013
                     /locus_tag="JN078_003730"
     CDS             168..1013
                     /locus_tag="JN078_003730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001248814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HAY9042766.1"
                     /translation="MRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDA
                     IILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLSN
                     AAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDK
                     AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELE
                     NNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATH
                     VDGLP"
     gene            1036..2547
                     /locus_tag="JN078_003731"
     CDS             1036..2547
                     /locus_tag="JN078_003731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HAY9042767.1"
                     /translation="MFTATEAVPVAKVVAGNKRYPGVVALDNVNFTLNKGEVRALLGK
                     NGAGKSTLIRMLTGSERPDSGDIWIGETRLEGDEATLTRRAAELGVRAVYQELSLVEG
                     LTVAENLCLGQWPRRNGMIDYLQMAQDAQRCLQALGVDVSPEQLVSTLSPAQKQLVEI
                     ARVMKGEPRVVILDEPTSSLASAEVELVISAVKKMSALGVAVIYVSHRMEEIRRIASC
                     ATVMRDGQVAGDVMLENTSTHHIVSLMLGRDHVDIAPVAPQEIVDQAVLEVRALRHKP
                     KLEDISFTLRRGEVLGIAGLLGAGRSELLKAIVGLETYEQGEIVINGEKITRPDYGDM
                     LKRGIGYTPENRKEAGIIPWLGVDENTVLTNRQKISANGVLQWSTIRRLTEEVMQRMT
                     VKAASSETPIGTLSGGNQQKVVIGRWVYAASQILLLDEPTRGVDIEAKQQIYRIVREL
                     AAEGKSVVFISSEVEELPLVCDRILLLQHGTFSQEFHSPVNVDELMSAILSVH"
     gene            2572..3570
                     /locus_tag="JN078_003732"
     CDS             2572..3570
                     /locus_tag="JN078_003732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAY9042768.1"
                     /translation="MSASSLSLPLGKSVSLKQFVSRHINEIGLLVVIAILYLVFSLNA
                     PGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQFEV
                     PLAIACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPID
                     ENEVLDWLGGQFLGVPVSALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGIN
                     VRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRG
                     SLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLANILLTQRSSKAKR"
     gene            3603..4697
                     /locus_tag="JN078_003733"
     CDS             3603..4697
                     /locus_tag="JN078_003733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HAY9042769.1"
                     /translation="MKINRIVNEGFMKTMLAAYLPGNSTVDLREVAVPTPGINQVLIK
                     MKSSGICGSDVHYIYHQHRATAAAPDKPLYQGFINGHEPCGQIVAMGQGCRHFKEGDR
                     VLVYHISGCGFCPNCRRGFPISCTGKGKAAYGWQRDGGHAEYLLAEEKDLILLPDALS
                     YEDGAFISCGVGTAYEGILRGEVSGSDNVLVVGLGPVGMMAMMLAKGRGAKRIIGVDM
                     LPERLAMAKQLGVMDHGYLATTEGLPQIIAELTHGGADVALDCSGNAAGRLLALRSTA
                     DWGRVVYIGETGKVEFEVSADLMHHQRRIIGSWVTSLFHMEKCAHDLTDWKLWPRNAI
                     THRFSLEQAGDAYALMASGKCGKVVINFPD"
     gene            4709..5581
                     /locus_tag="JN078_003734"
     CDS             4709..5581
                     /locus_tag="JN078_003734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase"
                     /protein_id="HAY9042770.1"
                     /translation="MTIYTLSHGPLKLDVSDQGGVIEGFWRDTTPLLRPGKKSGVATD
                     ASCFPLVPFANRVSGNRFVWQGREYQLQPNVEWDAHYLHGDGWLGEWQCVSHSDDSLC
                     LVYEHRSGVYHYRVSQAFHLTADTLTVTLSVTNQGAETLPFGTGWHPYFPLSPQTRIQ
                     AQASGYWLEREQWLAGEFCEQLPQELDFNQLAPLPRQWVNNGFAGWNGQARIEQPQEG
                     YAIIMETTPPAPCYFIFVSDPAFDKGYAFDFFCLEPMSHAPDDHHRPEGGDLIALAPG
                     ESTTSEMSLRVEWL"
     gene            complement(5629..6051)
                     /locus_tag="JN078_003735"
     CDS             complement(5629..6051)
                     /locus_tag="JN078_003735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HAY9042771.1"
                     /translation="MNTLRYFDFGAARPVLLLIARIAVVLIFIILGFPKMMGFDGTVQ
                     YMASLGAPMPMLAAIIAVVMEVPAAILIVLGFFTRPLAVLFIFYTLGTAVIGHHYWDM
                     TGDAVGPNMINFWKNVSIAGAFLLLAITGPGAISLDRR"
     gene            complement(6148..>6337)
                     /locus_tag="JN078_003736"
     CDS             complement(6148..>6337)
                     /locus_tag="JN078_003736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phenoxybenzoate dioxygenase"
                     /protein_id="HAY9042772.1"
                     /translation="WLCRGNPETQKAIWFNLQNGVLIGAVTLNQGREIRPIRKWIQSG
                     KTFDAKLLIDENIALKSL"
BASE COUNT         1467 a         1515 c         1835 g         1520 t
ORIGIN      
        1 ttgttaataa aaaccctaca ggaggcacta tgcctaaaaa aatgagaaca acccgtaatc
       61 tattattaat ggctacgcta ttaggtagcg cactatttgc cagggctgcg gataaagaaa
      121 tgaccattgg tgcaatatac cttgatacct agggatatta cgctggagtg cgtcagggcg
      181 ttcaggatgc ggcaaaagat tcttcagtac aggtacagtt aattgaaact aacgcccagg
      241 gtgatatttc gaaagaaagt acctttgttg ataccctcgt ggcgcgtaat gtcgatgcca
      301 ttattttatc ggcagtgtct gaaaatggca gtagccgtac cgttcgtcgc gccagtgaag
      361 cgggtattcc ggtgatttgc tacaacacct gtattaatca aaagggtgtc gataaatatg
      421 tctcggcgta tctggtcggc gatccactgg aatttggtaa aaaactgagt aacgctgccg
      481 ccgattattt tattgccaat aaaattgacc agccgaaaat tgccgtcatc aattgcgaag
      541 cctttgaagt ttgtgtgcag cgacgtaaag gatttgaaga agtattaaaa tcccgcgttc
      601 ccggcgcgca aattgtcgct aatcaggaag ggactgtttt agataaagcg atttccgttg
      661 gtgaaaaact gattatctcc acgccggatc tcaacgccat tatgggggag tcgggcggtg
      721 cgacactcgg cgcggtaaaa gcggtacgta atcaaaatca ggccggaaaa attgctgttt
      781 tcggttcgga tatgacaacc gaaattgctc aggagctgga aaacaatcag gtgctgaaag
      841 cggtagtgga tatttccggt aagaaaatgg gcaatgctgt tttcgcgcaa acattgaagg
      901 ttatcaataa acaagccgac ggtgaaaaag tgattcaggt gccaatcgat ctctatacca
      961 aaacggaaga tggtaaacag tggctggcaa cgcacgttga tggtctgccc taatcgctga
     1021 ttcgcagagg tccctatgtt cacggcaaca gaggcagtcc cggtagcaaa agtggtggca
     1081 ggaaataagc gttaccccgg cgtcgttgcg ctggataacg ttaacttcac gctcaataaa
     1141 ggcgaagttc gtgcgctgtt aggtaaaaac ggcgcgggca aatcgactct cattcgaatg
     1201 cttaccggca gcgaacgccc ggatagcggt gatatctgga ttggcgagac gcgactggaa
     1261 ggtgacgaag ctacgttgac tcgccgtgcc gctgaactgg gggttcgtgc ggtttatcag
     1321 gaattaagtc tggtggaagg gctgacggtg gcagaaaacc tctgccttgg tcaatggcct
     1381 cgccgcaacg gcatgattga ttacctgcaa atggcgcagg atgcccaacg ttgcttacag
     1441 gcgctgggcg ttgacgttag tcctgaacaa cttgtttcaa cgctaagccc ggcgcaaaag
     1501 caactggtgg aaattgcacg ggtgatgaag ggcgagccgc gcgtggtcat tcttgatgaa
     1561 cccaccagct cgcttgccag tgcagaagtt gaactggtga tcagtgcggt gaaaaagatg
     1621 tcggcactgg gcgtggcggt gatttatgtc agccaccgga tggaagaaat ccgccgcatt
     1681 gcctcctgtg ccaccgttat gcgcgatggt caggtggcgg gcgatgtgat gctcgaaaac
     1741 acctccacgc atcatattgt gtcgctaatg ctagggcgtg atcacgttga tattgcgccg
     1801 gttgcccctc aggaaattgt ggatcaggcc gtactggaag tccgtgcgtt acgccataag
     1861 cccaagctgg aggatatcag ctttacgtta cgtcgcggcg aagtgcttgg cattgctggc
     1921 ctgctggggg cagggcgcag tgaattgctg aaggcgattg ttgggctgga gacgtatgaa
     1981 cagggcgaaa ttgttatcaa cggcgagaaa atcacgcgcc ccgattacgg cgacatgctg
     2041 aaacgcggca ttggctatac gccagaaaac cgcaaagaag cggggatcat tccctggttg
     2101 ggcgttgacg aaaatacagt gctgaccaat cggcaaaaaa tcagcgccaa cggagtgctg
     2161 caatggtcca ccatccgccg cctgaccgaa gaggtgatgc agcggatgac ggtcaaggcc
     2221 gccagtagcg aaacgcccat cggcacgctt tctggtggca atcagcaaaa agtggtgatc
     2281 ggtcgttggg tctatgccgc cagccagatt ttgttgctcg acgagccaac gcgcggcgtc
     2341 gatatcgaag ccaaacagca gatttaccgt attgtccgtg agctggctgc cgaaggaaaa
     2401 agcgtggtgt ttatctccag tgaagtggag gagttgccgc tggtgtgcga ccgcatcctg
     2461 ttgttacagc acggtacgtt ctcgcaggag tttcactcgc cggtcaatgt ggatgagctg
     2521 atgtccgcca ttctgtctgt gcactgatga attttaccga ggaacctgaa gatgtctgct
     2581 tcgtcattat cattgccgct gggcaagagc gtctcgctca aacaatttgt cagtcgccat
     2641 attaatgaga tcggtttgct ggtggtaatc gccattcttt atctggtctt ctccctgaat
     2701 gcgcctggct ttatctcatt gaataaccag atgaacgtgc ttcgcgatgc tgccaccatc
     2761 gggatcgccg cctgggcaat gacgctgatt attatctccg gtgaaattga tgtcagcgtt
     2821 ggaccgatgg tggcttttgt ctcggtgtgc ctggcatttt tgctgcaatt tgaagttccg
     2881 ttggcgattg cttgtctgct ggtgttgctg ttaggcgcgc tgatgggaac gctcgccggg
     2941 gtgctgcgcg gcgtgtttaa cgtgcccagt ttcgttgcca cactggggct gtggagcgcc
     3001 ctgcgcggaa tggggctgtt tatgaccaac gcactgccag tgccgattga cgaaaacgag
     3061 gtgctggact ggctgggcgg acaatttctc ggtgtgccag tatccgcgct gatcatgatg
     3121 gtgttgtttg cgctgtttgt gttcattagc cgaaaaaccg ccttcgggcg ctcggttttt
     3181 gccgttggcg gtaatgccac ggcggcgcag ttgtgcggta ttaacgttcg tcgagtgcgc
     3241 attcttatct ttaccctttc gggattatta gcggcggtga ccggcatttt gctggcggca
     3301 cgcctcggtt ccggtaacgc aggtgccgca aacggtctgg agtttgacgt catcgccgcg
     3361 gtcgtggtcg gcggtacggc actttccggc ggtcgcggtt ccctgttcgg tacattgctt
     3421 ggtgtgctgg tgattacgct aatcggtaac ggtctggtgc tgctcggtat taactccttt
     3481 ttccagcagg tggtacgcgg cgtcatcatc gtggtggcgg tgctggcgaa tatcttgctg
     3541 acccagcgaa gcagtaaagc gaaacgctaa accttaacgc ccctggcgcg ggtgcggcag
     3601 ggatgaaaat taatcgtatt gttaatgagg gatttatgaa aacgatgctg gcagcttatt
     3661 taccaggaaa ttcaaccgtc gatctgcggg aagttgcggt gccgacgccg gggattaacc
     3721 aggtactgat caaaatgaaa tcctccggga tttgcggaag cgatgtccac tatatctatc
     3781 atcaacaccg tgccacggcg gcggcacccg ataaaccgtt ataccaggga tttatcaacg
     3841 gtcatgaacc atgcgggcag attgtggcga tggggcaagg ctgtcgccat tttaaagagg
     3901 gtgatcgcgt gctggtgtat cacatttctg gctgtggttt ttgcccgaac tgccgccgcg
     3961 gctttcctat ctcttgtact ggcaaaggaa aagcggctta cggctggcag cgtgacggcg
     4021 gtcatgccga atacttgctg gcggaagaaa aagatctgat cctcctgccg gatgcgctta
     4081 gctacgaaga tggtgcgttt atcagttgcg gcgttggtac agcgtatgaa ggaattttgc
     4141 gcggcgaagt ttccggcagt gataacgtgc tggtggtcgg tctggggcca gtcggcatga
     4201 tggcgatgat gctggcgaaa ggtcgcggtg caaaacggat catcggcgtt gatatgctgc
     4261 cggaacgtct ggcgatggca aaacagttag gggtgatgga tcacggctat ttagcaacca
     4321 ccgaaggtct gccgcagatt atcgccgaac tcacccacgg tggcgcggat gttgcgctcg
     4381 attgttctgg taatgccgca ggtcgcttgc tggcactgcg atccaccgct gattggggac
     4441 gggtggttta catcggagaa accggaaaag tggagttcga ggtcagcgcc gatctgatgc
     4501 accatcaacg gcggattatc ggctcctggg tgaccagtct gttccatatg gaaaaatgcg
     4561 cccatgatct gacggactgg aaactgtggc cgcgtaacgc cattacccat cgcttctcgc
     4621 tggaacaggc tggagatgcc tatgcgctga tggcgagcgg caaatgcggg aaagttgtga
     4681 ttaacttccc ggattaagga gttagcggat gaccatctat accttatctc acggaccgct
     4741 aaagctggat gtctctgacc agggcggcgt aatcgaaggc ttctggcgtg acacgacgcc
     4801 gcttttacgt cctggtaaaa aaagcggtgt ggcaaccgat gcttcctgtt ttccgctggt
     4861 gccgtttgca aaccgggtga gcggcaatcg ttttgtctgg caggggcgtg agtatcaact
     4921 gcaaccgaat gttgagtggg atgcgcacta tctacacggc gatggctggc tgggcgagtg
     4981 gcaatgtgtc tcgcacagcg atgatagctt gtgtctggtg tatgaacatc gcagcggtgt
     5041 ctatcactat cgggtaagtc aggcgtttca tttaacggcg gatacgctga cggtgacgct
     5101 ctctgtcacc aatcaagggg cagagacgct gccatttggt accggctggc atccttattt
     5161 tccgttgtca ccacaaacgc ggattcaggc gcaggcgagc ggttactggc tggagcggga
     5221 gcagtggctg gcgggtgagt tttgcgagca gctaccgcag gaactggatt ttaaccagct
     5281 cgcgccgttg ccgcgccagt gggtgaacaa tggttttgcc ggatggaatg gtcaggcccg
     5341 catcgagcag ccgcaggaag gttatgccat catcatggaa acgacgccac ctgcaccgtg
     5401 ttatttcatc tttgtttccg accctgcgtt tgataaagga tatgcgtttg atttcttctg
     5461 tctggaaccg atgagccatg cgccggatga tcatcatcgc ccggaagggg gtgatctcat
     5521 tgcgctagca ccaggggaat caacaacttc agagatgtcg ttgcgggtag agtggctgta
     5581 atttattaaa tgccggataa ggcgttcacg ccgcatccgg catctttcct aacgccgatc
     5641 gagagaaatt gcccccggcc cggtaattgc caatagcaag aacgcgccag cgatactgac
     5701 attcttccag aaattaatca tatttggccc aaccgcatcg ccggtcatat cccagtaatg
     5761 gtgaccaatc accgccgtac ccagcgtgta gaaaataaac agcaccgcca gcggacgggt
     5821 gaaaaagcca agcacgatta atatcgcggc gggcacttcc ataactaccg caataatcgc
     5881 tgccagcatc ggcattggcg cgcccaacga ggccatatat tggaccgtac cgtcaaagcc
     5941 catcattttg ggaaaaccca aaataatgaa aattaagacc acggcgatac gggcaattaa
     6001 taacaaaacg gggcgggcag ctccaaaatc aaaataacgt agtgtgttca taaccaatcc
     6061 ctttgcaaga taatgtgatt taaacgtaat acacactctt gcacctcgcc acgccccagg
     6121 cgttgagata ttcgctaatt atcctggtta cagtgattta agcgcgatgt tctcatctat
     6181 cagcagtttc gcatcaaacg ttttgccgct ctggatccat ttgcgaattg ggcgaatctc
     6241 acgcccctga ttcagcgtga ccgcaccgat aagcacgccg ttttgcagat taaaccaaat
     6301 cgccttctga gtttccgggt tgccacgaca aagccag
//
LOCUS       DADMJB010000198         6329 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.201, whole genome shotgun sequence.
ACCESSION   DADMJB010000198 DADMJB010000000
VERSION     DADMJB010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6329
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.201"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..150
                     /locus_tag="JN078_003737"
     CDS             <1..150
                     /locus_tag="JN078_003737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000151243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9042773.1"
                     /translation="AIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQ
                     PSRSL"
     gene            239..1699
                     /locus_tag="JN078_003738"
     CDS             239..1699
                     /locus_tag="JN078_003738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol dehydrogenase family protein"
                     /protein_id="HAY9042774.1"
                     /translation="MGNNLLSAKATLPVYDRNNLAPRIVHLGFGAFHRAHQGVYADIL
                     ATEHFSDWGYYKVNLIGGEQQIADLQQQDNLYTVAEMSADAWTARVVGVVKKALHVQM
                     DGLETVLAAMCEPQIAIVSLTITEKGYFHSPATGQLMLDHPMVAADVQNPHQPKTATG
                     VIVEALARRKAAGLPAFTVMSCDNMPENGHVMRDVVTSYAKAVDVKLAQWIEDNVTFP
                     STMVDRIVPAVTEDTLAKIEQLTGVRDPAGVACEPFRQWVIEDNFVAGRPEWEKAGAE
                     LVSDVLPYEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMEDEHYRYAAYGLMLQEQAP
                     TLKVQGVDLQDYANRLIERYSNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKF
                     DLLALGVAGWMRYVGGVDEQGNPIEISDPLLPVIQKAVQSSAEGKARVQSLLAIKAIF
                     GDDLPDNSLFTAKVTEAYLSLLAHGAKATVAKYSVK"
     gene            complement(1735..1938)
                     /gene="ydfZ"
                     /locus_tag="JN078_003739"
     CDS             complement(1735..1938)
                     /gene="ydfZ"
                     /locus_tag="JN078_003739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative selenium delivery protein YdfZ"
                     /protein_id="HAY9042775.1"
                     /translation="MTTYDRNRNAITTGSRVMVSGTGHTGKILSIDTEGLTAEQIRRG
                     KTVVVEGCEEKLAPLDLIRLGMN"
     gene            complement(1935..2801)
                     /locus_tag="JN078_003740"
     CDS             complement(1935..2801)
                     /locus_tag="JN078_003740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005005969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAY9042776.1"
                     /translation="MTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVR
                     FNVSRQPVREAFIKLAENGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARRAA
                     SMITESQCYQLEQNLHQQRIAIEHKQLDDFFELDDNFHQLLTQIADCQLAWDTIENLK
                     ATVDRVRYMSFDHVSPPEMLLRQHLDIFSALQKRDGDAVERAMTQHLQEISESVARSA
                     RKTATGLAKSNSFTLIPSGMRGFSPRLTAHACIKKDVSLIKNKKYFTRQEYLYCARYV
                     GFDCKSERRKHL"
     gene            complement(2890..3636)
                     /gene="ydfG"
                     /locus_tag="JN078_003741"
     CDS             complement(2890..3636)
                     /gene="ydfG"
                     /locus_tag="JN078_003741"
                     /EC_number="1.1.1.298"
                     /EC_number="1.1.1.381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional NADP-dependent 3-hydroxy acid
                     dehydrogenase/3-hydroxypropionate dehydrogenase YdfG"
                     /protein_id="HAY9042777.1"
                     /translation="MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL
                     GDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETM
                     IDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLN
                     LRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWW
                     VSTLPAHVNINTLEMMPVTQSYAGLNVHRQ"
     gene            3773..5818
                     /gene="dcp"
                     /locus_tag="JN078_003742"
     CDS             3773..5818
                     /gene="dcp"
                     /locus_tag="JN078_003742"
                     /EC_number="3.4.15.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707439.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-dipeptidase Dcp"
                     /protein_id="HAY9042778.1"
                     /translation="MTTMNPFLVQSTLPYLAPHFDQIANHHYRPAFDEGMQQKRAEIA
                     AIALNPQTPDFNNTILALEQSGELLTRVTSVFFAMTAAHTNDELQRLDEQFSAELAEL
                     ANDIYLNGELFARVDAVWQRRESLGLDSESIRLVEVIHQRFVLAGAKLAQADKAKLKV
                     LNTEAATLTSQFNQRLLAANKSGGLVVNDIAQLAGMSEQEIALAAEAAREKGLDNKWL
                     IPLLNTTQQPALAEMRDRATREKLFIAGWTRAEKNDANDTRAIIQRLVEIRAQQAKLL
                     GFPHYAAWKIADQMAKTPEAAFNFMREIVPAARQRASDELASIQAVIDKQQGGFSAQP
                     WDWAFYAEQVRREKFDLDEAQLKPYFELNTVLNEGVFWTANQLFGIKFVERFDIPVYH
                     PDVRVWEIFDHNGVGLALFYGDFFARDSKSGGAWMGNFVEQSTLNETHPVIYNVCNYQ
                     KPAAGEPALLLWDDVITLFHEFGHTLHGLFARQRYATLSGTNTPRDFVEFPSQINEHW
                     ATHPQVFARYARHYQSGAAMPDELQQKMRNASLFNKGYEMSELLSAALLDMRWHCLEE
                     NEAMQDVDDFELRALVAENMDLPAIPPRYRSSYFAHIFGGGYAAGYYAYLWTQMLADD
                     GYQWFVEQGGLTRENGQRFREAILSRGNSEDLERLYRQWRGKAPQIMPMLQHRGLNI"
     gene            complement(5863..>6329)
                     /locus_tag="JN078_003743"
     CDS             complement(5863..>6329)
                     /locus_tag="JN078_003743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="2-oxo-tetronate isomerase"
                     /protein_id="HAY9042779.1"
                     /translation="NLTSALSQRLIADQLRLTTAESCTGGKLASALCAAEDTPKFYGA
                     GFVTFTDQAKMKILSVSQQSLERYSAVSEKVAAEMATGAIERADADVSIAITGYGGLE
                     GGEDGTPAGTVWFAWHIKGQTYTAVMHFAGDCETVLALAVRFAHVQLLQLLL"
BASE COUNT         1583 a         1511 c         1628 g         1607 t
ORIGIN      
        1 gccattatga tcatggcata ttcagtgatt ggtttaatct ctgcgctgaa aatgccagag
       61 gtgaaagacc gtgatttaag tgcgctggaa gacgctgcgg aagatcaacc gcgtgttgta
      121 agagctgcgc aaccttccag aagtctgtaa accctcaatc ccttctctta ccggagaggg
      181 gatttttatt catataacaa aacatatagc ttgccatatt taaatttaag gaattgttat
      241 gggaaataat ttgttatcag caaaagcgac actccctgtt tatgatcgta ataacctggc
      301 cccaagaatt gttcatttag gctttggtgc atttcaccgt gcgcatcagg gcgtgtatgc
      361 cgatattctt gctacagaac atttcagtga ctggggatat tataaggtca acttaatcgg
      421 cggcgaacag caaattgccg atttacaaca gcaagataat ctttataccg ttgcggaaat
      481 gtcggccgat gcgtggacgg ctcgcgtcgt tggcgtcgtt aaaaaagcct tgcacgtaca
      541 gatggatggc ttagaaaccg tgttggctgc gatgtgtgaa ccgcaaatcg cgattgtctc
      601 tctgacaatc accgaaaaag ggtatttcca ctctccggcg accggacagt taatgctcga
      661 tcacccgatg gtcgctgccg acgtgcaaaa tccccaccag ccgaaaacag caacaggggt
      721 gattgttgag gcgctggccc gccgtaaagc ggcaggactt cccgcattta ccgtcatgtc
      781 atgtgacaac atgccagaaa acggtcatgt tatgcgtgac gttgtcactt catacgcgaa
      841 agctgttgat gtaaaactgg cacaatggat cgaagataac gtgactttcc catcaacaat
      901 ggtggaccgt attgtgcccg cagtgacaga ggatacgctg gcgaaaatcg aacaacttac
      961 cggtgtgcgc gatcctgcgg gcgttgcctg tgaacctttc cgccagtggg taatagaaga
     1021 taactttgtt gccggacgtc cagaatggga aaaagcggga gccgaactgg ttagtgatgt
     1081 gctgccttat gaagagatga agttgcgcat gctcaacggc agtcattcat tcctggcgta
     1141 tttgggttat cttgccggat atcagcacat taatgactgc atggaagatg aacattatcg
     1201 ttatgcggcg tatggcttga tgttgcagga acaagcgccg acgctgaaag tgcagggcgt
     1261 tgatttgcaa gattacgcta accgattaat tgaacgctat agcaatccgg cgttacgtca
     1321 tcgaacctgg cagattgcga tggatggtag ccagaaattg ccacagcgga tgttggattc
     1381 tgttcgctgg catctggcgc atgacagcaa gttcgatctg ctggcgctgg gcgtcgcggg
     1441 ttggatgcgt tatgtcggtg gtgttgatga acagggaaat ccgatagaaa tcagtgaccc
     1501 actgttacct gttattcaga aggctgtaca aagtagtgcc gaagggaaag cgcgcgtcca
     1561 gtcattgctg gcgattaagg caatctttgg tgatgatttg ccagacaata gcttgtttac
     1621 tgcaaaagtg acggaagcgt acttgtcttt attagcgcat ggcgcgaaag cgaccgtggc
     1681 gaaatattcc gtgaagtaaa aaaagcaatg ccgccatcgg cggcattcac acacttagtt
     1741 catgccgaga cgaatcaggt ccagaggtgc cagtttctct tcacaacctt caacaactac
     1801 ggtttttccg cggcggattt gctcagcggt cagaccttca gtatcaatcg acaggatctt
     1861 gccagtgtga ccggtgccgc taaccataac acggctgcca gtggtgattg cgttacggtt
     1921 acgatcgtag gtcgtcatag gtgttttctc ctttctgatt tacagtcgaa gcccacgtaa
     1981 cgggcgcaat ataaatactc ctgtcgagtg aaatattttt tgtttttgat caagctcaca
     2041 tcttttttga tgcatgcatg agccgtaagg cggggggaaa agcctctcat cccggatggg
     2101 atgagagtaa atgaattact cttcgctaaa ccagtcgctg ttttcctggc ggatctggcc
     2161 acggattcgc tgatttcctg caaatgttgc gtcattgcac gttctaccgc atcgccatca
     2221 cgtttttgca gggcagagaa aatatcaaga tgctggcgta acagcatttc tggtggagaa
     2281 acatggtcga aactcatata gcgcacgcga tcaacggtcg ctttcaggtt ctcaatggta
     2341 tcccacgcca gttgacagtc ggcaatctgc gtcaggagtt gatggaagtt gtcatcaagt
     2401 tcaaaaaaat catccagttg cttgtgctca atggcaatgc gttgctggtg aagattttgt
     2461 tccagttggt agcactggct ttcggtaatc atgctcgccg cccgacgcgc caccgcgcac
     2521 tcaatggcct gacggataaa actgccgttg cgcacctggg ccatggaaat tttgttgacg
     2581 tagctgccac gctgtggacg aatttgaatc aggccgtttt ccgccagttt aataaaggct
     2641 tcacgaaccg gctggcgtga cacattgaaa cgaacagaaa cttctttttc cgacaacggt
     2701 gtgcctggag caatcaggca atggacaatg tcgcgacgaa ggatacgata aatttgctga
     2761 ttgacaggct gtgtgggatt aagttgcgtt tcgacggtca ttcgttcttg cttgtgagtg
     2821 agttaactgc atgagtctac cacttttttg tgacaagcaa taacccggca gttacgccgg
     2881 gtataaaaat tactgacggt ggacattcag tccggcatag ctttgggtaa ccggcatcat
     2941 ttccagggta ttgatattga cgtgagcagg cagcgttgac acccaccaaa cggcttcgct
     3001 gacatcttct ggcgtcaatg caacggtatt ttgataggtt ttttccgctt taccgtcatc
     3061 gcctttaaag cggacattgg aaaactcggt gccacccacc agacccggtt cgatgtcggt
     3121 gacgcgcacc gccgtaccat gcaggtccgt acgcagattc aggctaaact gacgaacaaa
     3181 cgctttcgtc gcaccgtaaa cgttaccacc ggcataaggc cagctacctg ccgttgagcc
     3241 aatgttaata atatgaccat gattacgttc aaccataccc ggtaagacgg cgcgcgtcat
     3301 atataccagg cctttgttgt tggtatcaat catcgtttcc cagtcttcaa cgctggcttt
     3361 atgcgcaggc tccatgccca acgccaggcc ggcattattt accaggatat caatattgca
     3421 ccactcggca ggaagcgatg ccagcatctc ttcaatagcg gcgcggttgc gaacgtccag
     3481 ttgggcgatg tacagattat ctcccagttc gtcttttaac tcctgcaacc gttcctggcg
     3541 acggccagtg gcgataactt tatgcccttg ttgaataaaa cgacgagtaa tgcattcacc
     3601 aaaacctgcc gttgctccag ttactaaaac gatcatctca ctgttcctca acgcttttgt
     3661 gtgtcaataa catagcacgt gatgcttaag agcgggtaat actggtttgt aagattgcac
     3721 tccgttatca gtaagcctac gctatggaac acctcgcgtt caggagaaga aaatgacaac
     3781 aatgaatcct ttccttgtgc aaagcacact accgtatctg gctccccatt ttgatcaaat
     3841 tgccaatcat cactatcgcc cggcattcga tgagggaatg cagcaaaagc gggcagaaat
     3901 tgctgccatc gcgcttaacc cgcaaacgcc tgatttcaac aatactattc tggcactgga
     3961 acaaagcgga gaattactta cccgcgttac cagcgtcttt tttgcgatga ctgcggcgca
     4021 taccaatgat gaattacagc gtcttgatga acagttttcc gctgaactgg cggaactggc
     4081 taatgatatc tatctgaacg gtgaattatt cgcgcgggta gatgctgtct ggcagcgccg
     4141 tgaatccctg gggcttgata gtgaatccat ccgcctggtg gaggtgattc atcaacgttt
     4201 tgtccttgcc ggagccaaac ttgcgcaagc tgataaagca aaattaaaag tactgaatac
     4261 agaagctgcg accctgacca gccagtttaa ccagcgatta ctggcagcaa ataaatccgg
     4321 cggtctggtt gtgaacgata tcgcgcagct ggcaggaatg agtgagcaag agattgcgct
     4381 ggcggcagag gcggctcgcg agaaaggtct ggataacaaa tggctgattc cgctgctgaa
     4441 taccacccaa caaccggcgc ttgccgagat gcgcgatcgt gcgacgcgtg aaaaactgtt
     4501 tattgcgggc tggacgcgag cggaaaaaaa tgatgccaat gatacccgcg ctatcattca
     4561 acgtctggta gagattcgcg cacagcaggc gaaactgctt ggttttcctc attatgccgc
     4621 atggaaaatc gccgatcaga tggcaaaaac gccagaagca gcattcaact ttatgcggga
     4681 aattgttcca gcggcgcgtc aacgtgctag cgatgaatta gcctccatac aggcggttat
     4741 cgataagcag caaggcgggt ttagcgcgca gccgtgggac tgggcatttt atgccgaaca
     4801 ggtacggcgg gagaaatttg atcttgatga ggcgcagctc aagccatatt ttgaattaaa
     4861 cacggtgttg aatgaaggtg tattctggac cgcgaatcag ctcttcggta ttaagtttgt
     4921 cgaacgtttt gatattcctg tctaccatcc tgacgttcgt gtgtgggaaa tttttgatca
     4981 taatggcgtg ggactggcgt tattttacgg tgatttcttc gcccgtgatt caaaaagcgg
     5041 cggtgcatgg atgggcaatt ttgttgagca atcaacgctt aatgaaacgc atccggtaat
     5101 ttataacgtt tgcaattatc agaaacccgc tgccggtgag cctgcgttgt tactctggga
     5161 tgatgtcata accttattcc atgaatttgg tcatacgctg cacggccttt ttgcccgcca
     5221 gcgttatgcc acgctttccg gcaccaacac gccgcgtgat tttgtcgaat ttccgtcgca
     5281 aatcaacgaa cactgggcaa cgcatccgca ggtattcgct cgctacgccc ggcattatca
     5341 gagcggggca gcaatgcctg acgaactgca acagaaaatg cgtaatgcca gcctgttcaa
     5401 caaagggtat gagatgagcg aactgcttag cgccgcactt ctcgatatgc gctggcattg
     5461 cctggaagaa aacgaagcaa tgcaggatgt cgatgatttt gaattgcggg cgctggtggc
     5521 ggaaaatatg gatcttcctg ctataccgcc acgctatcgc agcagttatt tcgcccatat
     5581 ttttggtggc ggatatgctg caggttatta cgcttatctg tggacgcaaa tgttggccga
     5641 tgatgggtac cagtggtttg ttgagcaggg cggattaacg cgtgaaaatg ggcagcgttt
     5701 tcgcgaggcg atcctttcca gaggtaacag cgaagatctg gaacgcctgt atcgacaatg
     5761 gcgcggtaag gctcctcaga ttatgccgat gctgcaacat cgtggcttga atatataaac
     5821 accaccaatg gctggcctgg agatatcgcc aggccagcct ggttatagca gtaattgcag
     5881 cagctggacg tgggcaaacc tcaccgctaa agctaatacc gtttcgcagt cgccagcaaa
     5941 atgcataacc gcagtgtagg tctggccttt aatatgccac gcgaaccaga cggtacccgc
     6001 tggcgtacca tcttcaccgc cctccagtcc gccgtagccg gtaatggcaa tactgacatc
     6061 agcatccgca cgctctatgg cacctgttgc catttctgct gccactttct cactcaccgc
     6121 agaatatcgt tcaagagatt gctggcttac gctgaggatt ttcatctttg cctgatcggt
     6181 gaaagtaaca aagcctgcac cgtaaaattt gggtgtatct tcagctgcac acagggcgct
     6241 agccaactta ccgccggtgc atgattcggc ggtagttaag cgtaattgat ccgcgataag
     6301 tctttgactc aacgcggatg tcaggtttt
//
LOCUS       DADMJB010000199         6317 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.202, whole genome shotgun sequence.
ACCESSION   DADMJB010000199 DADMJB010000000
VERSION     DADMJB010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6317)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6317)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6317
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.202"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            285..626
                     /gene="raiA"
                     /locus_tag="JN078_003744"
     CDS             285..626
                     /gene="raiA"
                     /locus_tag="JN078_003744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HAY9042780.1"
                     /translation="MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE
                     PQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK
                     DANFVEEVEEE"
     gene            730..777
                     /locus_tag="JN078_003745"
     CDS             730..777
                     /locus_tag="JN078_003745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042781.1"
                     /translation="MKHTPFFFAFFFTFP"
     gene            877..2037
                     /gene="pheA"
                     /locus_tag="JN078_003746"
     CDS             877..2037
                     /gene="pheA"
                     /locus_tag="JN078_003746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydratase"
                     /protein_id="HAY9042782.1"
                     /translation="MTSENPLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHR
                     PVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNKINPH
                     SARIAFLGPKGSYSHLAARQYAARHFEQFIESGCAKFADIFNQVETGQADYAVVPIEN
                     TSSGAINDVYDLLQHTSLSIVGEMTLTIDHCLLVSGTTDLSTINTVYSHPQPFQQCSK
                     FLNRYPHWKIEYTESTSAAMEKVAQAKSPHVAALGSEAGGTLYGLQVLERIEANQQQN
                     FTRFVVLARKAINVSDQVPAKTTLLMATGQQAGALVEALLVLRNHNLIMTRLESRPIH
                     GNPWEEMFYLDIQANLESAEMQKALKELGEITRSMKVLGCYPSENVVPVDPT"
     gene            complement(2080..3201)
                     /gene="tyrA"
                     /locus_tag="JN078_003747"
     CDS             complement(2080..3201)
                     /gene="tyrA"
                     /locus_tag="JN078_003747"
                     /EC_number="1.3.1.12"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydrogenase"
                     /protein_id="HAY9042783.1"
                     /translation="MVAELTALRDQIDEVDKALLNLLAKRLELVAEVGEVKSRFGLPI
                     YVPEREASMLASRRAEAEALGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPSLRPVV
                     IVGGGGQMGRLFEKMLTLSGYQVRILEQHDWDRAADIVADAGMVIVSVPIHVTEQVIG
                     KLPPLPKDCILVDLASVKNGPLQAMLAAHDGPVLGLHPMFGPDSGSLAKQVVVWCDGR
                     KPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQ
                     LLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSERNLALIKRYYKRFGEAIELLKQG
                     DKQAFIDSFRKVEHWFGDYAQRFQSESRVLLRQANDNRQ"
     gene            complement(3212..4282)
                     /gene="aroF"
                     /locus_tag="JN078_003748"
     CDS             complement(3212..4282)
                     /gene="aroF"
                     /locus_tag="JN078_003748"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroF"
                     /protein_id="HAY9042784.1"
                     /translation="MQKDALNNVHITDEQVLMTPEQLKAAFPLSLQQEAQIADSRKTI
                     SDIIAGRDPRLLVVCGPCSIHDLETALEYARRFKALAAEVSDSLYLVMRVYFEKPRTT
                     VGWKGLINDPHMDGSFDVEAGLQIARKLLLELVNMGLPLATEALDPNSPQYLGDLFSW
                     SAIGARTTESQTHREMASGLSMPVGFKNGTDGSLATAINAMRAAAQPHRFVGINQAGQ
                     VALLQTQGNPDGHVILRGGKAPNYSPADVAQCEKEMEQAGLRPSLMVDCSHGNSNKDY
                     RRQPAVAESVVAQIKDGNRSIIGLMIESNIHEGNQSSEQPRSEMKYGVSVTDACISWE
                     MTDALLREIHQDLNGQLTARVA"
     gene            4490..4855
                     /locus_tag="JN078_003749"
     CDS             4490..4855
                     /locus_tag="JN078_003749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417093.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2799 domain-containing protein"
                     /protein_id="HAY9042785.1"
                     /translation="MMKKFIAPLLALLVSGCQIDPYTHAPTLTSTDWYDVGMEDAISG
                     SAIKDDDAFGDSQADRGLYLKGYAEGQKKTCQTDFTYARGLSGKSFPASCNNVESASQ
                     LHEVWQKGADENASTIRLN"
     gene            5005..5523
                     /locus_tag="JN078_003750"
     CDS             5005..5523
                     /locus_tag="JN078_003750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfiR family protein"
                     /protein_id="HAY9042786.1"
                     /translation="MRFSHRLFLLLILLLTGAPILAQEPSDVAKNVRMMVSGIVSYTR
                     WPALSGPPKLCIFSSSRFSTALQENAATSLPYLPVIIHTQQEAMISGCNGFYFGNESP
                     TFQMELTEQYPSKALLLIAKQNTECIIGSAFCLIIHNNDVRFAVNLDALSRSGVKVNP
                     DVLMLARKKNDG"
     gene            5513..>6317
                     /gene="dgcN"
                     /locus_tag="JN078_003751"
     CDS             5513..>6317
                     /gene="dgcN"
                     /locus_tag="JN078_003751"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DgcN"
                     /protein_id="HAY9042787.1"
                     /translation="MMDNDNSLNKRPTFKRALRNISMTSIFITMMLIWLLLSVTSVLT
                     LKQYAQKNLALTAATMTYSLEAAVVFADGPAATETLAALGQQGQFSTAEVRDKQQNIL
                     ASWHYTRKDPGDTFSNFISHWLFPAPIIQPIRHNGETIGEVRLTARDSSISHFIWFSL
                     AVLTGCILLASGIAITLTRHLHNGLVEALKNITDVVHDVRSNRNFSRRVSEERIAEFH
                     RFALDFNSLLDEMEEWQLRLQAKNAQLLRTALHDPLTGLANRAAFRSGIN"
BASE COUNT         1719 a         1612 c         1419 g         1567 t
ORIGIN      
        1 aaaaagagcc agtcagttgc ttaactgact ggcattacag cccttgagct gccgtttttt
       61 tattctgtta gttgtgaaac tgaagcgatt tagtcactat cgatctcatc aaatatggct
      121 cgctttgaga tattcctcaa gtaaaaaaac acctcttcct gcgatttctc acaaaaaaga
      181 ttcgttgaca aaaagtgaca aaattatgag attcccatca cacattttga catcaggaac
      241 ggtatgctga attcaccaag acgggaagac aagaggtaaa atttatgaca atgaacatta
      301 ccagcaaaca aatggaaatt actccggcca tccgccaaca tgtcgcagac cgtctcgcca
      361 aactggaaaa atggcaaaca catctgatta atccacatat cattctgtcc aaagagccac
      421 aagggtttgt tgctgacgcc acaatcaata cacctaacgg cgttctggtt gccagtggta
      481 aacatgaaga tatgtacact gcaattaacg aattgatcaa caagctggaa cggcagctca
      541 ataaactgca gcacaaaggc gaagcacgtc gtgccgcaac atcggtgaaa gacgccaact
      601 tcgtcgaaga agttgaagaa gagtagtcct ttatattgag tgtatcgcca acgcgccttc
      661 gggcgcgttt tttgttgaca gcgtgaaaac agtacgggta ctgtactaaa gtcacttaag
      721 gaaacaaaca tgaaacacac accgtttttc ttcgcattct tttttacctt cccctgaatg
      781 ggaggcgttt cgtcgtgtga aacagaatgc gaagacgaac aataaggcct cccaaaccgg
      841 ggggcctttt ttattgataa caaaaaaggc aacactatga catcggaaaa tccattactg
      901 gcgctgcgag agaaaatcag cgcgctggat gaaaaattat tagcattact ggcagagcgg
      961 cgcgaactgg ccgtcgaggt gggaaaagcc aaactgctct cgcatcgccc ggtacgagat
     1021 attgatcgtg aacgcgattt actggaaaga ttaattacgc tcggtaaagc gcaccatctg
     1081 gacgcccatt acattactcg cctgttccag ctcatcattg aagattccgt attaactcag
     1141 caggctttgc tccagcaaca tctcaataaa attaatccgc actcagcacg catcgctttt
     1201 ctcggcccca aaggttctta ttcccatctt gcggcgcgcc agtatgctgc ccgtcacttt
     1261 gagcaattca ttgaaagtgg ctgcgccaaa tttgccgata tttttaatca ggtggaaacc
     1321 ggccaggccg actatgccgt cgtaccgatt gaaaatacca gctccggtgc cataaacgac
     1381 gtttacgatc tgctgcaaca taccagcttg tcgattgttg gcgagatgac gttaactatc
     1441 gaccattgtt tgttggtctc cggcacgact gatttatcca ccattaatac ggtctacagc
     1501 catccgcagc cattccagca atgcagcaaa ttccttaatc gttatcctca ctggaagatt
     1561 gaatataccg aaagtacgtc agcggcaatg gaaaaggttg cacaggcaaa atcaccgcat
     1621 gttgctgcgt tgggaagcga agctggcggc actttgtacg gtttgcaggt actggagcgt
     1681 attgaagcga atcagcaaca aaacttcacc cgatttgtgg tgttggcacg taaagccatt
     1741 aacgtgtctg accaggttcc ggcgaaaacg acgttgttaa tggcgaccgg gcaacaagcc
     1801 ggtgcgctgg ttgaagcgtt gctggtgctg cgcaaccaca atctgattat gacccgtctg
     1861 gaatcacgcc cgattcacgg taatccatgg gaagagatgt tttatctgga tattcaggcc
     1921 aatcttgaat cagcggaaat gcaaaaagca ttgaaagagt taggtgaaat tacccgttca
     1981 atgaaggtat tgggctgtta cccaagtgag aacgtagtgc ctgttgatcc aacctgatga
     2041 aaaggtgccg gatgatgtga atcatccggc actggattat tactggcggt tgtcattcgc
     2101 ctgacgcaat aacacgcggc tttcactctg aaaacgctgt gcgtaatcgc cgaaccagtg
     2161 ctccaccttg cggaaactgt caataaacgc ctgcttatcg ccctgcttca gcaactcaat
     2221 cgcctcgccg aaacgcttat agtaacgttt gattaacgcc agattacgct ctgacgacat
     2281 aataatgtcg gcataaagct gcggatcctg agcaaacagt cgcccgacca tcgccagctc
     2341 aaggcggtaa atcggcgaag agagcgccag aagttgctca agctgaacat tttcttctgc
     2401 cagatgcagc ccataagcaa aagtagcaaa gtggcgcaga gcctgaataa acgccatatt
     2461 ctgatcgtgc tcgacagcgc taatacgatg cagccgagcg ccccagacct gaatttgctc
     2521 cagaaaccat tggtatgctt ccggcttacg tccatcacac cagaccacaa cttgctttgc
     2581 caggctaccg ctgtccgggc cgaacatcgg gtgtaacccc agtaccgggc catcgtgcgc
     2641 cgccagcatg gcctgtaatg gtccattttt cactgatgcc agatcaacca gaatacaatc
     2701 tttcggtaaa ggcggtaatt tgccgataac ttgctcagta acgtggattg gcacactaac
     2761 aatcaccatt ccggcatcgg caacaatatc agccgctcga tcccagtcat gttgctccag
     2821 aatccgcacc tgataacccg agagtgtcag catcttctcg aacaggcgtc ccatctgacc
     2881 gccaccgccg acgataacca ccggacgcag tgacggacaa agtgttttaa atcctttgtc
     2941 gttttcactg gagtaagatt cacgcatcac ccgacgcaaa acatcctcaa tcagatctgg
     3001 cggtaccccc agagcttccg cctctgcacg acgcgaggcc aacatagatg cctcgcgctc
     3061 cggaacataa ataggcagtc caaagcggct tttcacctcg cccacttcag caaccagttc
     3121 cagacgcttc gctaataaat tcagcagcgc tttatcgact tcatcaattt gatcgcgtaa
     3181 tgcggtcaat tcagcaacca taataaacct cttaagccac gcgagccgtc agctgcccgt
     3241 tcagatcctg atgaatttca cgcagcaagg catcggtcat ttcccagcta atgcaggcat
     3301 cggttacgga tacaccgtat ttcatttcac tgcgcggttg ctcagaagac tgattgccct
     3361 cgtggatatt actttcgatc atcagaccaa taattgagcg attgccatct ttgatttgag
     3421 caaccacgga ttctgccacc gcaggctgac ggcgataatc tttattggaa ttaccgtggc
     3481 tgcaatctac catcagagac gggcgcagtc ccgcctgttc catctctttt tcacattgcg
     3541 caacatccgc agggctatag ttcggcgctt taccaccgcg caggatgaca tgcccgtccg
     3601 gattcccctg agtttgtagc aacgcaacct gccctgcctg gttaatgcca acaaaacggt
     3661 gcggctgggc ggcggcgcgc atagcgttaa ttgctgttgc cagactgccg tcggtgccgt
     3721 ttttaaaacc aaccggcatg gaaagcccgg aggccatttc acggtgagtt tgcgattccg
     3781 ttgtacgagc accaattgct gaccagctaa acagatcgcc caggtattgc gggctattcg
     3841 gatctaacgc ttccgtcgcc agtggcagtc ccatattcac cagctcaagc agcaatttac
     3901 gcgcgatctg cagcccggct tctacatcaa aagagccatc catatgggga tcgttaatta
     3961 accctttcca gccgacagtg gtacggggtt tttcaaaata gacgcgcatt accagataga
     4021 ggctatcgct gacctctgcg gcaagggctt taaatcgacg agcatattcc agagcagttt
     4081 ccagatcatg aatggaacaa ggaccacaaa ctaccagcag acgaggatcg cgcccggcga
     4141 taatatctga aatggtttta cgcgagtcag caatctgggc ttcttgttgc aggctcaatg
     4201 gaaaagcggc cttcagttgt tccggagtca ttaaaacctg ttcgtcggta atatgtacgt
     4261 tattcagcgc gtctttttgc atgatggcga tcctgtttat gctcgtttgc gatagttgat
     4321 cctcagcgag gatgacgtaa cgataacaca taaagtaaag ttttcaatcc atatttcgta
     4381 cgcttttctt tacacgaaca atttactcgc gctttgatgc ttatttcgta caaataaatt
     4441 tacaccccct ttaaaaacaa tccgctatgc tttgaaaaag gagaaagaaa tgatgaaaaa
     4501 gtttatcgcc cccttattgg ctttactggt tagcggatgt cagattgatc cttatactca
     4561 cgcgccaacc ttgaccagca ccgactggta tgatgtcggt atggaagatg cgatatcggg
     4621 cagcgccata aaagatgacg atgcatttgg cgattcacag gcggatcgcg gtctatacct
     4681 taaaggatat gccgaaggac aaaagaaaac ttgccagacc gattttactt atgcccgggg
     4741 actttccggt aaaagctttc ctgccagctg taacaatgtt gaaagtgcca gccaactgca
     4801 tgaagtatgg caaaaagggg ctgatgaaaa tgccagcaca atacgattaa attaattaaa
     4861 accccacaaa taaattaaac ataagatttt actcattgtg ttttatttct cacattgatg
     4921 acgatcgcat gaaaaaatga tattttaatg agcattctga aaaaatatcg atgcatttcg
     4981 agcgaagaag gtggggatcc ctgaatgcgt ttttctcacc gactgttctt acttctgatt
     5041 ctcctgctga cgggagcacc aatactcgct caggagcctt ctgacgttgc gaaaaacgtg
     5101 cgtatgatgg tttccggtat tgtcagttac acccgctggc ctgcgctatc agggccacca
     5161 aagttatgta tcttttcatc ttcacgtttt agtaccgccc tacaagagaa tgccgcgaca
     5221 tctttgcctt atctgcctgt catcattcac actcaacaag aggcgatgat ttcaggctgc
     5281 aatggttttt attttggcaa cgagtcaccg acattccaga tggaattaac cgaacaatat
     5341 ccgtcaaagg cgttattatt aattgccaaa caaaataccg agtgcattat tggtagcgcc
     5401 ttttgtctga tcatccacaa taatgacgtc agatttgccg taaacctgga tgccttatcg
     5461 cgtagcggtg taaaggtcaa cccggatgtc ttaatgctcg cacggaagaa aaatgatgga
     5521 taacgataat tctcttaata agcgccccac gtttaaaaga gcattacgca acatcagtat
     5581 gaccagcata tttatcacta tgatgctgat ctggttgctg ctttccgtga cctcggtgct
     5641 gaccctgaaa cagtacgcgc aaaaaaacct ggcactgaca gcagcaacaa tgacttacag
     5701 tctggaagca gctgtcgttt ttgccgatgg ccctgcagca actgaaacac tggcagcgct
     5761 gggccagcaa gggcaatttt caactgcaga agtacgtgat aagcagcaaa atattctggc
     5821 gtcctggcat tacacccgta aggatccagg cgatactttc agcaatttca taagccactg
     5881 gctcttcccc gcccccatca ttcagccgat tcgtcacaat ggtgaaacca ttggcgaagt
     5941 acgcttaacc gctcgcgaca gttcaatcag ccattttatc tggttttcgc tcgccgtact
     6001 gaccggttgt attctgctgg catcaggcat cgcaattacc ctcacccgcc atttgcacaa
     6061 tggcctagtg gaagcgctga aaaatatcac cgatgtcgta catgatgtgc gttccaaccg
     6121 caatttttcc cgacgagttt ctgaagaacg tatcgctgag tttcaccgct tcgctctcga
     6181 cttcaacagt ctgctggatg aaatggaaga gtggcagctt cgtttacagg ccaaaaatgc
     6241 gcagcttctg cgtaccgcgc tacatgaccc attaaccggg ctggctaacc gcgcagcgtt
     6301 tcgtagcggc atcaata
//
LOCUS       DADMJB010000200         6292 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.203, whole genome shotgun sequence.
ACCESSION   DADMJB010000200 DADMJB010000000
VERSION     DADMJB010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6292)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6292)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6292
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.203"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(85..621)
                     /gene="ssb1"
                     /locus_tag="JN078_003752"
     CDS             complement(85..621)
                     /gene="ssb1"
                     /locus_tag="JN078_003752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein SSB1"
                     /protein_id="HAY9042788.1"
                     /translation="MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDK
                     ATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEV
                     VVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
                     PAAPSNEPPMDFDDDIPF"
     gene            875..3697
                     /gene="uvrA"
                     /locus_tag="JN078_003753"
     CDS             875..3697
                     /gene="uvrA"
                     /locus_tag="JN078_003753"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HAY9042789.1"
                     /translation="MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDT
                     LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTIT
                     EIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKG
                     EHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLA
                     ESFETALELSGGTAVVADMDDPKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGA
                     CPTCDGLGVQQYFDPDRVIQNPELSLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEA
                     PWGSLSANVHKVVLYGSGKENIEFKYMNDRGDTSIRRHPFEGVLHNMERRYKETESSA
                     VREELAKFISNRPCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLKLAG
                     QRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGV
                     MYVLDEPSIGLHQRDNERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGV
                     HGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEVPKKRVPANPEKVLKLTGARGNNLK
                     DVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHF
                     DKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRARGYTPGRFSFNVRGGRC
                     EACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEARE
                     FFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYIL
                     DEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGE
                     ILVSGTPETVAECEASHTARFLKPML"
     gene            complement(3732..4088)
                     /locus_tag="JN078_003754"
     CDS             complement(3732..4088)
                     /locus_tag="JN078_003754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HAY9042790.1"
                     /translation="MTISELLQYCMAKLGAEQSVHNDWKATQIKVEDVLFAMVKEVEN
                     RPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQ
                     AVNLLPEEKRKLLVQL"
     gene            complement(4092..4508)
                     /locus_tag="JN078_003755"
     CDS             complement(4092..4508)
                     /locus_tag="JN078_003755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HAY9042791.1"
                     /translation="MWYQKTLTLSAKSRGFHLVTDEILNQLADMPRVNIGLLHLLLQH
                     TSASLTLNENCDPTVRHDMERFFLRTVPDNGNYEHDYEGADDMPSHIKSSMQGTSLVL
                     PLHKGRIQTGTWQGIWLGEHRIHGGSRRIIATLQGE"
     gene            complement(4619..5332)
                     /locus_tag="JN078_003756"
     CDS             complement(4619..5332)
                     /locus_tag="JN078_003756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class B acid phosphatase"
                     /protein_id="HAY9042792.1"
                     /translation="MRKITQAISAVCLLFALNSSAVALASSPSPLNPGTNVARLAEQA
                     PIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFW
                     EKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPAT
                     NMNPVIFAGDKPGQNTKSQWLQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTY
                     KPLPQAGAFGEEVIVNSEY"
     gene            5694..6236
                     /locus_tag="JN078_003757"
     CDS             5694..6236
                     /locus_tag="JN078_003757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005059113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042793.1"
                     /translation="MVINFITRDGDDDMNISYMNSNKTTSLPVELDALNNKDISYAKD
                     FSYVKDFFLYIETQLKIAKDFCRLGEEVSSSIASKVFHAFIDLVNKIRGKKDFMYICT
                     LCCFAEEVKGDYSHYRTFLFDIGNQYKVKLTQSGKKEFSLTLEFNDTIIESQKVTGNK
                     AKHILEDIEIFYRNKPDTYY"
BASE COUNT         1594 a         1554 c         1568 g         1576 t
ORIGIN      
        1 cataacggag gcttcttttt tatggctggc agatgcttta atcatccacc ttaaaacaat
       61 ataacctatt gttttaatga caaatcagaa cggaatgtca tcatcaaagt ccatcggcgg
      121 ctcgttagac ggcgctgccg gagcggactg ctgcgggcga gactgcgcgc cgccgctgaa
      181 ctgattgcca ccctgcggct gctgaggctg accccaaccg ccctgcggct gaccaccacc
      241 gatattacca cctgccggag cgccaccacc ctgacgacca cccagcatct gcatggtgcc
      301 gccaacgttc accacgactt ctgtggtgta gcgatcctga ccggattgat cggtccattt
      361 acgggtacgc agctgacctt cgatataaac ctgagaacct ttacgcagat attcgctggc
      421 cacttctgcc agtttgccga acagcacaac gcggtgccat tcagtctgtt ctttcatctc
      481 gccggtcgct ttatcacgcc aggattcgga agtagccagc gtaatgttgg caactgcgcc
      541 accatttggc atgtagcgta cttccgggtc ctgacccaga ttaccaacga gaataacctt
      601 gtttacgcct ctgctggcca tgttcgtgtc tcctgaaaaa aatcgttctg aataagtgta
      661 aacgcgcgat tgtaccatta ccaatagcgc ttttactatg ttgtgacctc ggttccggga
      721 aacaaacctg gccagacatt gttacacaac actccggata atgcattcca atactgtata
      781 ttcattcagg tcaatttgtg tcataattaa ccgtttgtga tcgccggtag caccatgcca
      841 ccgggcaaaa aagcgtttaa tccgggaaag gtgaatggat aagatcgaag ttcggggcgc
      901 ccgcacccat aatctcaaaa acatcaacct cgttatcccc cgcgacaagc tcattgtcgt
      961 gaccgggctt tcgggttctg gcaaatcctc gctcgctttc gacaccttat atgccgaagg
     1021 gcagcgccgt tacgttgaat ccctttccgc ctacgcgcgg cagtttctgt cactgatgga
     1081 aaagccggac gtcgatcata ttgaggggct ttctcctgcc atctcaattg agcagaaatc
     1141 gacgtctcat aacccgcgtt ctacggtggg gacaatcacc gaaatccacg actatttgcg
     1201 tttgttgttc gcccgcgtcg gcgaaccgcg ctgtccggac cacgacgtcc cgctggcggc
     1261 gcaaaccgtc agccagatgg tggataacgt gctgtcgcag ccggaaggca agcgtctgat
     1321 gctactcgcg ccaatcatta aagaacgcaa aggcgaacac accaaaacgc tggagaacct
     1381 ggcaagccag ggttacatcc gtgctcgtat tgatggcgaa gtctgcgatc tttccgatcc
     1441 gccgaaactg gaactgcaaa agaaacacac tattgaagtg gtggttgatc gcttcaaggt
     1501 gcgtgacgat cttacccaac gtcttgcgga gtcgtttgaa accgcgctgg agctttccgg
     1561 tggtacagcg gtagtggcgg atatggacga cccgaaagcg gaagagctgc tgttctccgc
     1621 caacttcgcc tgcccaattt gcggctacag tatgcgtgaa ctggagccac gactgttttc
     1681 gtttaacaac ccggcaggtg cctgcccaac ctgtgacggc cttggcgtac agcaatattt
     1741 cgatcctgac cgcgtgatcc aaaaccccga gctgtcactg gctggcggtg cgatccgtgg
     1801 ctgggatcgc cgcaacttct attacttcca gatgctgaaa tcgctggcag atcactataa
     1861 gttcgacgtc gaagcgccgt ggggcagcct gagcgcgaac gtgcataaag tggtgttgta
     1921 cggttctggc aaagaaaaca ttgaattcaa atacatgaac gatcgtggcg atacctccat
     1981 ccgtcgtcat ccgttcgaag gcgtgctgca caatatggag cgccgttata aagagacaga
     2041 atccagtgcg gtacgtgaag aattagccaa gtttatcagc aatcgcccat gcgccagctg
     2101 cgaagggacg cgtctgcgtc gggaagcgcg ccacgtttat gtcgagaata cgccgctgcc
     2161 tgctatctcc gacatgagca tcggtcatgc gatggaattc ttcaacaatc tcaaactagc
     2221 tggtcagcgg gcgaagattg cagaaaaaat ccttaaagag atcggcgatc gtctgaaatt
     2281 cctcgttaac gtcggcctga attacctgac actttcccgc tcggcagaaa cactttccgg
     2341 cggtgaagcc cagcgtatcc gtctggcgag ccagattggt gcgggcctgg ttggcgttat
     2401 gtatgtactg gacgagccgt ctatcggcct gcaccagcgc gataacgagc gcctgttggg
     2461 tacgcttatc catctgcgcg atctcggtaa taccgtgatt gtggtggagc atgacgaaga
     2521 cgcaattcgc gccgctgacc atgtgatcga tatcggtcct ggtgcgggtg ttcacggcgg
     2581 tgaagtggtc gcagaaggtc cgctggaagc gatcatggcg gtgcctgaat cgttgaccgg
     2641 gcagtacatg agcggtaaac gcaagattga agtgccgaag aaacgcgttc cggcgaatcc
     2701 agaaaaagtg ctgaagctga caggtgcacg cggcaacaac ctgaaggacg tgacgctcac
     2761 gctgccagtc ggtctgttta cctgcatcac aggggtttca ggttccggta aatcgacgct
     2821 gattaacgac acactgttcc cgattgccca acgccagttg aatggtgcga ccatcgccga
     2881 accggcaccg tatcgcgata ttcaggggct ggagcatttc gataaagtga tcgatatcga
     2941 ccaaagccca attggtcgta ctccacgttc taacccggcg acctataccg gcgtgtttac
     3001 acctgtgcgc gaactgtttg cgggcgtacc ggaatcccgt gcgcgtggtt atacgccagg
     3061 acgtttcagc tttaacgtcc gtggcgggcg ctgcgaagcc tgtcagggcg acggtgtgat
     3121 caaagtggag atgcacttcc tgccggatat ctacgtgccg tgcgatcagt gcaaaggtaa
     3181 acgctataac cgtgaaacgc tggaaattaa gtacaaaggc aaaaccatcc acgaagtgct
     3241 ggatatgacc atcgaagagg cgcgtgagtt ctttgatgcg gtgccagctc tggcgcgtaa
     3301 gctgcaaacg ttgatggacg ttggtctgac gtacattcgc ctggggcagt ccgcaaccac
     3361 actttctggt ggtgaagccc agcgcgtgaa gctggcgcgt gagctgtcaa aacgcggcac
     3421 cgggcagacg ctgtatattc tcgacgagcc gaccaccggt ctgcacttcg ccgatattca
     3481 gcaactcctc gacgtgctgc ataaactgcg cgatcagggc aataccattg tggtgattga
     3541 gcacaatctc gacgtgatca aaaccgctga ctggattgtc gacctgggac cagaaggcgg
     3601 cagtggcggc ggcgaaatcc tcgtctccgg tacgccagaa accgtcgcgg agtgcgaagc
     3661 ttcgcatacg gcacgcttcc tcaagccgat gctgtaatcg ttaaggccgc tttctgagcg
     3721 gccttttcct ttcagagttg taccagcaat ttacgctttt cttccggtag taaattcact
     3781 gcctgctgat aagacgcatc caccagataa tagatttgcg aatccggcag cgaaccgtcg
     3841 agatacacgg tgctccagtg cgctttattc agatggcggc taggacgcac atcgctgtgc
     3901 tgctgacgta gcagctccgc cagctccggg ctggttttca gcgaaacagc tgggcgattt
     3961 tctacttctt tcaccatcgc aaacagtaca tcttccactt tgatctgcgt cgctttccag
     4021 tcgttatgca cgctctgttc tgcgcctagt tttgccatgc aatattgtag caactccgaa
     4081 atggtcattt tttactcccc ttgtagtgtc gcgatgatgc gacgcgatcc gccgtggatg
     4141 cgatgttccc ccagccagat gccttgccag gtgccggtct gaatacgccc tttatgtaac
     4201 ggcaatacaa gcgatgttcc ctgcattgag gatttgatat gagaaggcat atcgtctgct
     4261 ccctcatagt catgctcata atttccgttg tcgggaacgg tgcggaggaa aaaacgctcc
     4321 atgtcgtggc gtacggtggg atcgcagttc tcattaagtg tcagagaggc ggaggtatgt
     4381 tgcagcaaca gatgcagtaa gccgatgtta acgcgcggca tatcagccag ctgattcaga
     4441 atttcatccg ttaccagatg aaacccacga gatttggcgc taagcgtgag cgtcttttga
     4501 taccacatgt gctgctcctt gataaaactc tcttaatcag tttgcagcaa gacagcgaaa
     4561 ggataaaggt gtgattaaaa aaacagcatt cgggagagca tcacgctctc ccgctctgtc
     4621 agtattctga attgacgatc acctcttcac caaacgcacc cgcttgtggc aagggtttgt
     4681 aggtagagtt ggaggcgcgc agaatgcgga taccacgagc gccgacatcg cgtgcggcgg
     4741 taatatcatt atcagaatcg ccataaaaaa ttcggatatt tttatcctgc agccattgcg
     4801 attttgtatt ttgccctggt ttatcgcccg caaagatcac cggattcatg ttggtggcag
     4861 gaatatgaaa attatccgcc agcgtttttg aaaccgtttc tgttttcgtc ggactacgac
     4921 cagtcacaaa gaagatcgcg tcaccgcggc gtacatgcat atcaatcagc tggcgagcga
     4981 cctcttttgg aatgctgaat tcatcccagc cattgttcat tttttcccag aacacaggat
     5041 ttttcagata atcttcgctt tctggcgaga aggttttttt gccgcgccag aagcccgggc
     5101 tggaaaaaag taccgtgtca tcgatatcaa accccaccgc cattggcgga cgccctgcga
     5161 ggctattttc aatttgtgcg accgaaaccc aatgaattgg tgcctgttca gcaagcctgg
     5221 caacgttagt accagggtta agcggtgaag gagatgaggc cagggcaaca gcggaactgt
     5281 ttagagcgaa caataagcaa acggcactga ttgcctgtgt gatcttgcgc atatttttcc
     5341 ctaaatagtc agtatgttga aactttttat tgtgagattt gttgcaaaaa ccatctgacc
     5401 ataacgccag ctgcagggga aaggaaggat tatctgcggt ttttgtgatg aaaagcagga
     5461 tgattatatt taacccagta aatacgttcc tgtctttttt gtataaaaaa tgtttattac
     5521 tcgatgtaag gatacattaa ttttacgttt attatgatga atcctctgca aatgagcgaa
     5581 atttgataga acatttatct gctgtacgat ttaatgaact taatgataca gcattacaaa
     5641 aacaatcgaa gtttataaag atgattcctg attgaccaga accctatcct acaatggtga
     5701 ttaattttat tactcgcgat ggagatgatg atatgaatat atcatatatg aatagcaaca
     5761 aaacgacatc tttacctgtt gagctagatg cactaaataa taaagatatc tcttatgcca
     5821 aagatttttc ttatgtcaaa gatttctttt tatacataga aacacagtta aaaattgcaa
     5881 aagatttttg tagacttgga gaagaagtat caagttctat tgcaagtaaa gtttttcacg
     5941 catttattga tttagttaac aaaatcaggg gtaagaaaga ctttatgtat atttgcacgc
     6001 tttgctgttt tgccgaggag gttaaaggtg attattctca ttacaggacc tttttatttg
     6061 atattggtaa tcaatataag gttaaactta cacaaagcgg aaaaaaagag ttctctttaa
     6121 cattagaatt taacgatact ataattgaat ctcagaaagt cacaggcaat aaggcaaagc
     6181 atattcttga ggatatagaa atattctatc gtaacaaacc cgatacttat tattaaattt
     6241 aataatggtt agatgtgcag aaattattac tccacacgaa aaaataggga aa
//
LOCUS       DADMJB010000201         6051 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.204, whole genome shotgun sequence.
ACCESSION   DADMJB010000201 DADMJB010000000
VERSION     DADMJB010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6051)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6051)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6051
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.204"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(95..2197)
                     /locus_tag="JN078_003758"
     CDS             complement(95..2197)
                     /locus_tag="JN078_003758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HAY9042794.1"
                     /translation="MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTP
                     AAVSVVDGEEMRLATPRINLSESLTGVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIR
                     GIRLYVDGIPATMPDGQGQTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQ
                     QPPTIEASSYYGSFGSWRYGLKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQK
                     NLANAKLGVRIDEASKLSLIFNSVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTI
                     KQTQAGLRYERSLSAQDDMSVMMYAGERETTQYQSIPMAPQLNPSHAGGVITLQRHYQ
                     GIDSRWTHRGELGVPVTFTTGLNYENMSENRKGYNNFRLNSGMPEYGQKGELRRDERN
                     LMWNIDPYLQTQWQLSEKLSLNAGVRYSSVWFDSNDHYVTPGNGDDSGDASYHKWLPA
                     GSLKYAMTDAWNIYLAAGRGFETPTINELSYRADGQSGMNFGLKPSTNDTIEIGSKTR
                     IGDGLLSLALFQTDTDDEIVVDSSSGGRTTYKNAGKTRRQGAELAWDQRFAGDFRVNA
                     SWTWLDATYRSNVCNEQDCNGNRMPGIARNMGFASIGYVPEDGWYAGTEARYMGDIMA
                     DDENTAKAPSYTLVGLFTGYKYNYHNLTVDLFGRVDNLFDKEYVGSVIVNESNGRYYE
                     PSPGRNYGVGMNIAWRFE"
     gene            2439..3500
                     /locus_tag="JN078_003759"
     CDS             2439..3500
                     /locus_tag="JN078_003759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HAY9042795.1"
                     /translation="MHLRHLFSSRLRGSLLLGSLLVASSFSTQAAEEMLRKAVGKGAY
                     EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQT
                     LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI
                     GKESVIWVVDGENIKLKTAIQNTGKMSTGLALDSKGKRLYTTNADGELITIDTADNKI
                     LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLA
                     VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ
                     KSTKQQEATQPDDVIRIAL"
     gene            complement(3613..5112)
                     /gene="ansP"
                     /locus_tag="JN078_003760"
     CDS             complement(3613..5112)
                     /gene="ansP"
                     /locus_tag="JN078_003760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310084.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparagine permease"
                     /protein_id="HAY9042796.1"
                     /translation="MSKHDTDTSDQHAAKRRWLNAHEEGYHKAMGNRQVQMIAIGGAI
                     GTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFL
                     GEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNM
                     IGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHG
                     LLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLV
                     MLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMA
                     MGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIAS
                     WAFIIVCQMRLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYPNGTYT
                     IAALPIIGILLVIGWFGVRKRVAEIHSTAPVVEEDEEKQEIVFKPETAS"
     gene            5379..5996
                     /locus_tag="JN078_003761"
     CDS             5379..5996
                     /locus_tag="JN078_003761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HAY9042797.1"
                     /translation="MIKVYGVPGWGSTISELMLTLADIPYQFVDVSGFDHEGTSRELL
                     KTLNPLCQIPTLALENDEIMTETAAIALMVLDRRPDLAPPVGRAERQQFQRLLVWLVA
                     NVYPTFTFADYPERWAPDAPEQLKKNVIEYRKSLYIWLNSQLTAEPYAFGEQLTLVDC
                     YLCTMRTWGPGHEWFQDNATNISAIADAVCQLPKLQEVLKRNEII"
BASE COUNT         1611 a         1536 c         1443 g         1461 t
ORIGIN      
        1 gtcttgctga aattatgcaa caaaatattg ctattttata ccagcaatac aatcgttaaa
       61 gtaaatgccc ggcaaatacc gggcatcaag gtaattactc aaatctccac gcaatattca
      121 tgccgacacc ataatttcgt ccgggcgaag gttcgtaata tctcccgttt gactcattga
      181 caatgacaga accaacgtat tctttatcga ataaattatc gacacgacca aataaatcca
      241 cagttaaatt gtggtaattg tatttatacc cggtgaataa gccgacgaga gtataagacg
      301 gcgcttttgc cgtattttca tcatctgcca taatatcgcc catataacgc gcttccgtgc
      361 ctgcatacca accatcttcc ggtacataac ctatcgacgc aaagcccata ttacgggcga
      421 tccctggcat ccgattaccg ttacaatcct gttcattgca aacattgctg cgataggtcg
      481 catcaagcca ggtccaggac gcgtttacgc gaaaatctcc tgcgaaacgt tgatcccatg
      541 ccagttcagc gccttgacga cgggtctttc cggcattttt gtaagtcgta cgcccaccgc
      601 tactgctatc gacaacaatt tcatcatcag tgtcggtctg aaacaatgcg agactaagca
      661 gcccatcacc aatacgcgtt ttactgccga tctcaattgt atcgttggtg gatggtttta
      721 aaccaaagtt cataccgctt tgcccatcag cacgataaga cagctcatta atcgtcggcg
      781 tttcaaaacc tcgcccggct gccagataga tattccaggc atcggtcatt gcatatttta
      841 acgaaccggc aggtagccat ttatgataac tggcatcacc gctgtcatcg ccgttacccg
      901 gagtaacgta atggtcgttg gaatcaaacc acacggagct gtagcgcacg ccagcattca
      961 gcgacagttt ttcgctcagc tgccactgcg tctgtaaata gggatcgatg ttccacatca
     1021 gattgcgttc gtcgcgacgc aactcacctt tttgcccgta ctccggcatg ccgctattca
     1081 ggcggaagtt attgtagccc ttgcggtttt cactcatgtt ttcgtagttc aggccggtag
     1141 tgaacgtgac cggaacgccc agttcaccac ggtgtgtcca gcggctgtct atcccctggt
     1201 aatggcgttg cagggtaatc acgccgcccg catgtgacgg gttaagttgt ggtgccatgg
     1261 gtattgactg gtactgggtc gtttctcgct ctccggcata catcatcaca ctcatatcat
     1321 cttgcgcgct caggctacgc tcatagcgca acccagcctg agtttgcttg atggtttttc
     1381 gcgtgtcgta ctgttctgca cgaggcgctt gttgtggatt agccttccat tctgctttgg
     1441 ttagcccacc tgggtcatct gctttgatat ccacactatt gaaaatcaga cttaatttgc
     1501 tggcttcatc aatgcgtacg cccagtttgg cattggctaa atttttctgt gcgccactat
     1561 ggtcacgata gccgtgggtc gtaaaacgcg tggttgagac ggtgtaatcg acatcgccag
     1621 gctgtgtgcc gtctcccgtt gcgcccgttg ctttcagccc atagcgccag ctgccaaaac
     1681 tgccgtagta actactggct tcaatggttg gtggctgttg tccggtctgg gtggtgacat
     1741 tcattacccc accagacgcg ttgccataca gggcagagaa ggggccacgc agcacttcca
     1801 cattttgcac actgcttaaa tcgatgttgg atgtttgccc ttgcccgtcg ggcatggtgg
     1861 cgggaatacc gtccacatac aggcgaatac cgcgaatacc gtaagtggag cgggagccaa
     1921 atccgcgaat cgacagctgt aaatcttgcg catagttctg ccggttttgt acctgcaaac
     1981 caggcacgcc ggtcagtgat tcggacaagt taatgcgcgg tgttgccagg cgcatctcct
     2041 cgccatccac cacgcttact gctgctgggg tatccagttc tgaaaccacc tgcggtgcgg
     2101 cactgacaat catagtctgt tcatcagcgg caaaaacaac gggggaaagg acaagcagtg
     2161 cgggcaaaac ggtctgtcgg acggaaaaaa tcttcatgaa aaaagccagg ttaagaatgg
     2221 gaaaacgctg tcatggtaat aaaattgtaa acttatgcaa aacgaaacgg cacgatacgt
     2281 taattaattg agaaaattgt agtcgtaacg gcaagaaatg ctccacattt gagaaaataa
     2341 tgattaccat tcccatttat aacaagagcg tgacgatgat tacgcttagc gaagcattgt
     2401 gaagcagcaa aaatattggt tcatcaaagg gagtcgtcat gcatttacgt catctgtttt
     2461 catcgcgcct gcgtggttca ttactgttag gttcattgct tgttgcttca tcattcagta
     2521 cgcaggccgc agaagaaatg ctgcgtaaag cggtaggtaa aggtgcctac gaaatggctt
     2581 atagccagca agaaaacgcg ctgtggctcg ccacttcgca aagccgcaaa ctggataaag
     2641 gtggcgtggt ttatcgtctt gatccggtca ctctggaagt gacgcaggcg atccataacg
     2701 atctcaagcc gtttggtgcc accatcaata acacgactca gacgttgtgg tttggtaaca
     2761 ccgtaaacag cgcggtcacg gcgatagatg ccaaaacggg cgaagtgaaa ggccgtctgg
     2821 tgctggatga tcgtaagcgc acggaagagg tgcgcccgct gcaaccgcgt gagctggtag
     2881 ctgatgatgc cacgaacacc gtttacatca gtggtattgg taaagagagc gtgatttggg
     2941 tcgttgatgg cgagaatatc aaactgaaaa ccgccatcca gaacaccggt aaaatgagta
     3001 ccggtctggc gcttgatagc aaaggcaaac gtctttacac cactaacgct gacggcgaat
     3061 tgattaccat cgacaccgcc gacaataaaa tcctcagccg taaaaagctg ctggatgacg
     3121 gcaaagagca cttctttatc aacatcagcc ttgataccgc caggcagcgt gcatttatca
     3181 ccgattctaa agcggcagaa gtgttagtgg tcgatacccg taatggcaat attctggcga
     3241 aggttgcggc accggaatca ctggctgtgc tgtttaaccc cgcgcgtaat gaagcctacg
     3301 taacgcatcg tcaggcaggt aaagtcagtg tgattgacgc gaaaagctat aaagtggtga
     3361 aaacgttcga tacgccgact catccaaaca gcctggcgct gtctgccgat ggcaaaacgc
     3421 tgtatgtcag tgtgaaacaa aaatccacta aacagcagga agctacccag ccagacgatg
     3481 tgattcgtat tgcgctgtaa tagatatggc gagggtgaaa acggtgagac ttgcctgcct
     3541 tttatcacgg cgtatccggc actttcgtca gtaatctgaa tttgcccggc acgtagccgg
     3601 gcaattttgc aattaactcg ccgtttcagg cttaaacaca atttcctgtt tttcttcatc
     3661 ttcctcgacg actggcgcag tgctgtgaat ttcagcaacg cgtttgcgca caccaaacca
     3721 gcctataacc agcagaatac cgataatcgg cagcgccgcg atagtataag tcccgttcgg
     3781 gtaatcgaac gccatcagca caaggacact cagtaaaaac agtaatgtca gccaggaagt
     3841 gaagggcgcg ccaggcagtt taaaactgac atccgctgct ttgccttctt taatcgcttt
     3901 acgcaggcgc atctggcaca cgatgataaa cgcccatgaa gcgatgattc ccagcgacgc
     3961 gaagttcaac acaatctcaa atacgcgcga cggcaccaga tagttgagga atacgccgac
     4021 gacatacaca accagtgtcg ctagaatccc ggcatacggc acatgctgac gactcatttt
     4081 cgccataaaa ctcggtgcgg aaccgcccat cgccattgag cgcagaatac gtccggtgca
     4141 gtacagacct gagttcaggc tggagagggc agcggtcagc accacaatgt tcataatgct
     4201 gccgatatat ggcacaccca gtttagagaa aaacgtcacg aacggacttt gccccgcctg
     4261 atacgcgctc cacggcaata acataaccag caacaccacg gagccgacgt aaaacaggcc
     4321 aatacgccaa atcacactgt taatggcttt aggcaccatg gtctgcggat ctttacattc
     4381 tccggcagct gtacccacca tttcaatgga ggcaaaagca aacactacgc cctgaatcaa
     4441 caccagcgca ggcagcaaac cgtgggggaa gaagccgcca ttatcggtga ttaaatgaaa
     4501 gccagtggtg ttgccatcca gcggctgacc actaccgagg aacactgtac ccacgaccaa
     4561 aaaggtcaca atggcgagca ctttaataag cgcaaaccag aactccatct ccgcaaacca
     4621 tttcacaccg atcatattca tggtgccaac gatggtaagt gcagcgagcg caaagaccca
     4681 ctgcggcacg ccgccaaacg caccccagta atgcatatac agagcgacgg cggtaatatc
     4741 aacaatcccc gtcatcgccc agttgatgaa gtacatccag ccagcaacat aagcggcttt
     4801 ctcacccaaa aactcacggg cataagagac aaaactgcca ctggaagggc ggtgtagcac
     4861 cagctcaccc aatgcacgca gaataaaaaa cgaaaacaag ccacaaatta aataaaccag
     4921 tgccagtgct ggacccgcca tttgcagtcg ggctcctgca cctaaaaaca agccggtgcc
     4981 aatcgcgccg ccaatggcga tcatctgtac ctggcgattg cccatcgctt tgtgataccc
     5041 ctcttcgtgg gcattaagcc agcggcgttt cgcggcgtgt tgatctgaag tgtcggtgtc
     5101 gtgtttactc attgctctcc ctgattgctt taatgaaaaa gtcatataag ttgccatgaa
     5161 caatgtttat tcatcctggc gatgatagtt atcaccatta ttctttatgg gtataaaact
     5221 atcggcgcag catcctaccc gttatcgata tacgatgcaa aacatcccct tacaatcctg
     5281 aaggggattc atacaactga cgaaaaaatg acaaatactt ttgctggtta acctgtgtac
     5341 tgtcctacac ttaatcttta aaagattgtg aggggcatat gattaaggtg tatggcgtac
     5401 ccggatgggg ctctacaatc agtgagctga tgctaacact ggctgatatt ccttatcagt
     5461 tcgttgatgt cagtggtttt gaccacgagg gaacttcacg cgagttattg aaaaccctga
     5521 acccgttgtg tcagattccg acactggcgc tggaaaatga cgagattatg acggagacag
     5581 cggcgattgc attgatggtt ctcgatcgtc gcccggacct tgcgccaccg gttgggcgcg
     5641 ccgaacgtca gcagtttcaa cggctattgg tctggctggt tgctaatgtc tatccaacat
     5701 tcactttcgc cgattaccct gagcgttggg ctcctgacgc acctgaacag ttaaagaaga
     5761 atgttattga atatcgtaaa tcgctttata tctggctgaa ttcacaattg accgctgaac
     5821 cttatgcgtt tggtgagcaa ctaacgctgg tggactgtta tctttgcact atgcgcacat
     5881 gggggcctgg gcatgaatgg tttcaggata atgccacgaa tatcagtgcg attgctgatg
     5941 ctgtatgtca gttaccgaaa ttacaagaag tattaaaaag gaatgaaatt atttgagtgg
     6001 gataccagag gattatgtta tttattattc agtaacttta tccacaatga t
//
LOCUS       DADMJB010000202         6049 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.205, whole genome shotgun sequence.
ACCESSION   DADMJB010000202 DADMJB010000000
VERSION     DADMJB010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6049
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.205"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(24..392)
                     /locus_tag="JN078_003762"
     CDS             complement(24..392)
                     /locus_tag="JN078_003762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042798.1"
                     /translation="MNMMRIFYIGLSGVGMMFSSMASGHDAGGLQSPACGVVCDPYIC
                     VNSDGISPELTRKYLGEKAAENLQSLQGYDPSEFTFANGVFCDVKEKLCRDDRYFGVD
                     GKRSGKINQITTKMLFMCRE"
     gene            918..1613
                     /gene="minC"
                     /locus_tag="JN078_003763"
     CDS             918..1613
                     /gene="minC"
                     /locus_tag="JN078_003763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HAY9042799.1"
                     /translation="MSNTPIELKGSSFTLSVVHLHEAEPKVIHQALEDKIAQAPAFLK
                     HAPVVLNVSALEDPVNWSAMHKAVSATGLRVIGVSGCKDAQLKAEIEKMGLPILTEGK
                     EKAPRPAPAPQAPAQNTTPVTKTRLIDTPVRSGQRIYAPQCDLIVTSHVSAGAELIAD
                     GNIHVYGMMRGRALAGASGDRETQIFCTNLMAELVSIAGEYWLSDQIPAEFYGKAARL
                     QLVENALTVQPLN"
     gene            1637..2449
                     /gene="minD"
                     /locus_tag="JN078_003764"
     CDS             1637..2449
                     /gene="minD"
                     /locus_tag="JN078_003764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020801817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinD"
                     /protein_id="HAY9042800.1"
                     /translation="MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLR
                     NLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGV
                     AKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGIL
                     ASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVL
                     RASNQGEPVILDINADAGKAYADTVERLLGEERPFRFIEEEKKGFLKRLFGG"
     gene            2453..2719
                     /gene="minE"
                     /locus_tag="JN078_003765"
     CDS             2453..2719
                     /gene="minE"
                     /locus_tag="JN078_003765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division topological specificity factor
                     MinE"
                     /protein_id="HAY9042801.1"
                     /translation="MALLDFFLSRKKNTANIAKERLQIIVAERRRSDAEPHYLPQLRK
                     DILEVICKYVQIDPEMVTVQLEQKDGDISILELNVTLPEAEELK"
     gene            complement(3198..3317)
                     /locus_tag="JN078_003766"
     CDS             complement(3198..3317)
                     /locus_tag="JN078_003766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001131457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HAY9042802.1"
                     /translation="MPLSYAGYHHFIMMSLVSGEHNTPALSLQDESPGLVPAG"
     gene            complement(3278..3463)
                     /locus_tag="JN078_003767"
     CDS             complement(3278..3463)
                     /locus_tag="JN078_003767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042803.1"
                     /translation="MSRRYSSATITLVILFCRRPHCRKISVRQYYLKRVIFYPTTLQR
                     TAFKKCLFLMRDIIISS"
     gene            3564..3737
                     /locus_tag="JN078_003768"
     CDS             3564..3737
                     /locus_tag="JN078_003768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042804.1"
                     /translation="MSYSSFKIILIHVKNIIPIITATLILNYLNNSERSLVKQILIED
                     EIIVRATYLIPDI"
     gene            3799..4083
                     /locus_tag="JN078_003769"
     CDS             3799..4083
                     /locus_tag="JN078_003769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707069.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper family protein"
                     /protein_id="HAY9042805.1"
                     /translation="MADMNRTTKGALLGAGVGLLTGNGVNGVLKGAAVGAGVGAVTEK
                     GRDGKNARKGAKVGAAVGAVTGVLTGNGLEGAIKGAVIGGTGGAILGKMK"
     gene            4087..4422
                     /locus_tag="JN078_003770"
     CDS             4087..4422
                     /locus_tag="JN078_003770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmgD family protein"
                     /protein_id="HAY9042806.1"
                     /translation="MMMKKFALLAGLFVFAPMTWAQDYNIKNGLPSETYITCAEANEM
                     AKTDSAQVAEIVAVMGNASVASRDLKIEQSPELSAKVVEKLNQVCAKDPQMLLITAID
                     DTMRAIGKK"
     gene            complement(4479..6049)
                     /locus_tag="JN078_003771"
                     /pseudo
     CDS             complement(4479..6049)
                     /locus_tag="JN078_003771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707067.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
BASE COUNT         1661 a         1396 c         1385 g         1607 t
ORIGIN      
        1 tagaacataa tgtaaacaag gcatcactca cgacacataa ataacatctt tgtggtgatt
       61 tgattgattt ttccactccg cttaccatcc acaccaaaat aacgatcatc acgacataat
      121 ttttctttaa catcgcaaaa tacaccgtta gcgaatgtaa attcgctggg atcgtagcct
      181 tgtaatgatt gtaagttttc agcggctttt tcgccgagat atttccttgt taactctggg
      241 gaaatgccat ctgagttcac acaaatatac gggtcgcaaa caacgccgca cgccggagat
      301 tgaagtccgc cagcgtcatg tccagacgcc attgatgaga acatcatccc cacacctgac
      361 aatccgatat aaaaaatacg catcatattc atagcacatc ctgataatcc aaccgtacaa
      421 cacttatgct catttcatca tcaatccgta atcaaaaccg ctgacctgga cgagttacga
      481 tgacctgaca gaagtatcag acgtcttctg cggtttctat gattatgata gagcaattct
      541 atggcggata ttaagataac gggtatctgt tctttaatga tgctgcaaaa aatggaaagt
      601 taagaaagcc tggcgtggtg aaaaaataca cttgcctcaa tactggatat ttaaacaggt
      661 ctggagatgc tgtcacgatt agggtgcgga aaaaggaagc gtaaataaga acaatcaaaa
      721 gtacgacggc aatgggttga ttgacaaggg tattttttaa gctatgaatc agcgccattt
      781 atcacagaat agacttttac tctgaataaa tgggagggtg acttgcctca atataatcca
      841 gactataaca tgccttatag tcttcggaac atcatcgcgc gctggcgatg attaatagct
      901 aattgagtaa ggccaggatg tcaaacacgc caatcgagct taaaggcagt agcttcactt
      961 tatctgtggt tcatctgcat gaggcagaac ctaaggttat ccatcaggcg ctggaagaca
     1021 aaatcgctca ggcccccgca tttttaaaac atgcccccgt tgtactcaac gtcagtgcac
     1081 tggaagaccc ggtaaactgg tcagcgatgc ataaggcggt gtcggcaacc ggtttgcggg
     1141 ttattggcgt aagtggctgc aaagatgcgc aacttaaagc cgaaattgaa aagatggggc
     1201 tgcctatcct gacggaagga aaggaaaaag cgccgcgtcc agctcccgca ccacaggctc
     1261 cagcgcaaaa tacaacgccg gtcacaaaaa cgcgtttaat agataccccg gtgcgttccg
     1321 gtcagcgtat ttatgctcca caatgtgatc tgattgttac aagccacgtt agcgctgggg
     1381 ccgaattgat tgccgatggg aacattcatg tctatggcat gatgcgcggt cgtgcgcttg
     1441 caggggcaag tggtgaccgg gaaacgcaaa tattttgtac gaacctgatg gcggaactgg
     1501 tgtccatcgc aggtgaatac tggctgagtg atcaaatccc agcagaattt tatggcaaag
     1561 cggcgcgact gcagttagtc gaaaacgctt tgaccgttca accgttaaat tgatcccttt
     1621 ttaacaagga atttctatgg cacgcattat tgttgttact tcgggcaaag ggggggttgg
     1681 taagacaacc tccagcgcgg ccatcgccac tggtttggcc cagaagggaa agaaaactgt
     1741 cgtgatagat tttgatatcg gcctgcgtaa tctcgacctg attatgggtt gtgaacgccg
     1801 ggtcgtttac gatttcgtca acgtcattca gggcgatgca acgctaaatc aggcgttaat
     1861 taaagataag cgtactgaaa atctctatat tcttccggca tcgcaaacac gcgataaaga
     1921 tgccctcacc cgtgaagggg tcgccaaagt tcttgatgat ctgaaagcga tggattttga
     1981 atttatcgtt tgtgactccc cggcagggat tgaaaccggt gcgttaatgg cactctattt
     2041 tgcagacgaa gccattatta ccaccaaccc ggaagtctcc tcagtacgcg attctgaccg
     2101 tattttaggc attctggcgt cgaaatcacg ccgcgcagaa aatggcgaag agcctattaa
     2161 agagcacctg ctgttaacgc gctataaccc aggccgcgta agcagaggtg acatgctgag
     2221 catggaagat gtgctggaga tcctgcgcat caaactcgtc ggcgtgatcc cagaggatca
     2281 atcagtgttg cgcgcctcta accagggtga accggtcatt ctcgacatta acgccgatgc
     2341 gggtaaagcc tacgcagata ccgtagaacg tctgttggga gaagaacgtc ctttccgctt
     2401 cattgaagaa gagaagaaag gcttcctcaa acgcttgttc ggaggataag ttatggcatt
     2461 actcgatttc tttctctcgc ggaagaaaaa cacagccaac attgcaaaag aacggctgca
     2521 gattattgtt gctgaacgcc gtcgcagcga tgcagaaccg cattatctgc cgcagttgcg
     2581 taaagatatt cttgaggtca tttgtaaata cgtacaaatt gatcctgaga tggtaaccgt
     2641 acagcttgag caaaaagatg gcgatatttc tattcttgag ctgaacgtga ccttaccgga
     2701 agcagaagag ctgaaataag cccgctgtaa aaacgcattt atcttcaagg cagagtcatt
     2761 tctgccttga gtttttcatc cctctcatcc acgttgtggt aaagcggcga gtattcttgc
     2821 tgatactcct cattgctatt tccacctccc cctttacacc ttaaggctgt tcccacgcac
     2881 agaacaaaat gtttatgcct ggttgagtaa ataacctcat tgttagtgtg gatacactgg
     2941 gggatgataa ccccgcaatt tcattattca ttgttctccc ataggatgag gtttcccgcc
     3001 gtaactggcg ggcttttttt gccccagaat tttccctttt agccccctgt aaacgaaaac
     3061 tgcgccgaag cgcagtttaa tcgttgatgg tcagaacgac cagttcacga tatatactgc
     3121 gggtatcgac tgatttcgat tccatgccat tggataaatg atagtagcgt ctaagtgacc
     3181 taagctctgc tgcaacatca gcccgcaggc accagaccag gggattcatc ctgaagagac
     3241 agcgcaggtg tattgtgttc accactcacc aaagacatca tgatgaaatg atgatatccc
     3301 gcataagaaa gaggcatttt ttaaacgcag tgcgctgaag tgtagttgga taaaaaatca
     3361 ctcttttcag ataatactgt cgtacgctta tctttcgaca atgaggccgt cggcaaaata
     3421 aaatgactaa tgtaatcgtt gctgatgaat atcttctgct cacataaaaa tcacacaata
     3481 atattgataa atcagattat cttaccttta caacattgcg ttaacagtca atgacacttc
     3541 ttgaataaaa atattgctaa tcaatgagtt attcctcatt taagattatt ctcattcacg
     3601 taaaaaacat aattcctatc atcacagcca cgctcatttt gaattatctg aataatagcg
     3661 agcgttcttt agttaagcag atcttaattg aagacgaaat tattgtgcgt gcaacttact
     3721 taataccgga catctaagtt gaagaaaaaa atacttgcct tcgggcttat ctcagcattg
     3781 ttctgctcca cgccagcgat ggcggatatg aatcgcacca cgaaaggtgc attgctaggc
     3841 gcaggcgttg gtttacttac tggcaatggt gttaatggcg tactgaaagg tgcagctgtt
     3901 ggcgctggtg ttggtgcagt aacagaaaaa ggccgcgacg gtaaaaatgc gcgtaaaggt
     3961 gcaaaagtag gtgccgccgt tggtgctgtc actggcgttc tgaccggcaa tggcctcgaa
     4021 ggggcgatta aaggtgccgt gattggcggt acgggtggtg caattctggg taaaatgaaa
     4081 taaggaatga tgatgaaaaa atttgcttta ctggcgggcc tgtttgtttt cgcaccaatg
     4141 acctgggcgc aggactacaa tattaaaaac ggtttaccgt cagaaaccta tattacttgc
     4201 gcagaagcca acgaaatggc aaaaactgac agcgcacagg ttgcagaaat tgttgcggta
     4261 atgggtaatg ccagcgttgc cagccgtgat ttaaaaattg agcaatctcc ggaactgagc
     4321 gccaaagtgg tagaaaaact gaatcaggtt tgcgctaaag acccgcaaat gctgttgatc
     4381 acggcaattg atgacaccat gcgtgctatc ggcaaaaaat aatatttcat atgtaccgcg
     4441 tcgatgaata cgacgcggtt ttttagctaa cggcgggatc agaacttata tttcaggccc
     4501 accatcactg cggtgtcatt gtagccatta tcacccagct gcacgcccac attcccccag
     4561 acgctggccg ctggattcag gttgccattt acgccaagtt taatttcccc caaattactc
     4621 gccccatctt gttcgacttt cacaccgttc attgagacag caaaatcttt actgttatgg
     4681 atccagttca tttcaacaaa aggttcaaag tcgtcaccgt gcggaccgct gtttttctcc
     4741 tgagtacgaa taaaggtgcg gaaaccaagt cgggtctgga tgttgttatt tgcgtcattc
     4801 tcaatacgtg agccattggc ttcggtgtgc gcattatgat cgacgcccat ccagatagcc
     4861 tgtgcctgtg gctggaatat ccacgtgtat ttcgccgctt ccagaccaaa ggatttattc
     4921 agggcaaagc cctaacccgc ttccagcgag acggttgcgc ctttcgcact ataggattca
     4981 taggctaatt catccccttt caccgagttt ttaaaccagc tatattgcgc ccaggcgtca
     5041 atgtatgcgc cttttttact gatgtcatcg gcaaaccaag tggcatacag ccctgcgcaa
     5101 tagcctctga cactcccttt cgaacgataa tccgacacgc tggaatgagt tgagttgtag
     5161 tcgcgggcat aaccagccat cactcccaaa cgccaactgt cactgtcggt aaaaccaccg
     5221 gttaacagat cggcccctaa ctgcgagacg tagcgatgcg aggtcgttct caactgtccg
     5281 ttgctgtcac gccaggcatt atgcccgcca atttgacgta gccaaagtcg gcttgaacgc
     5341 tcctgttcag ttacaggatc gatgtagcgc atttcacccg cacggtcgtt cagacgcata
     5401 acaaaaagag tgttagcggc tgccaggttg gcgacgtaac ttccagcttc ggggcgcagg
     5461 acgggggtag gcgtttctgt tggttctgaa tttccctctg agctgttatc ctcctcattc
     5521 actgactgat aacttgtcaa ataccagttt ttgccttgtt gttttagttg atattcgaaa
     5581 gctccagctg caatccttgc atcaccttgt ctgaaggctt ctgctggaga ttcatcgcca
     5641 ttcacagtta tgagttcgat cccgtttagc gtggccgcgc cgcttcctcc agcatttttc
     5701 acatagacgg tagttgaacc cgaagtatta ccctcaacaa taagtctgtc cgtagccgat
     5761 ttatcatcac ctaatacggt gcggatatta agctgaccat tattaccgac ataattacct
     5821 tttacggtta atgtttttcc ttgggtaaat gtttgaccat catcatacga aagattgata
     5881 atactgtctg aattagtcag atgggtaaca acggagtcat ctttcatatt ccagattgta
     5941 ttttctgaaa gcttcagcgt ggttgtgccg ctaacgagtt tagtcgctcc atttagaata
     6001 gagtcggacg aaattatgtt taagtcacct ccagtattat taaccagaa
//
LOCUS       DADMJB010000203         6002 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.206, whole genome shotgun sequence.
ACCESSION   DADMJB010000203 DADMJB010000000
VERSION     DADMJB010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6002)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6002)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6002
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.206"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            1..933
                     /locus_tag="JN078_003772"
                     /pseudo
     CDS             1..933
                     /locus_tag="JN078_003772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417591.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1321..1697)
                     /gene="rnpB"
                     /locus_tag="JN078_003773"
     ncRNA           complement(1321..1697)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="JN078_003773"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(1730..2875)
                     /gene="garK"
                     /locus_tag="JN078_003774"
     CDS             complement(1730..2875)
                     /gene="garK"
                     /locus_tag="JN078_003774"
                     /EC_number="2.7.1.165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312029.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate 2-kinase"
                     /protein_id="HAY9042807.1"
                     /translation="MKIVIAPDSYKESLSASEVAQAIEKGFREIFPDAQYVSVPVADG
                     GEGTVEAMIAATQGSERHAWVTGPLGEKVNASWGISGDGKTAFIEMAAASGLELVPAE
                     KRDPLVTTSRGTGELILQALESGATNIIIGIGGSATNDGGAGMVQALGAKLCDANGNE
                     IGFGGGSLNTLNDIDISGLDPRLKDCVIRVACDVTNPLVGDNGASRIFGPQKGASEAM
                     IVELDNNLSHYAEVIKKALHVDVKDVPGAGAAGGMGAALMAFLGAELKSGIEIVTTAL
                     NLEEHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGSLTDDVGVVH
                     QHGIDAVFSVLTSIGTLDEAFRGAYDNICRASRNIAATLAIGMRNAG"
     gene            complement(2972..3862)
                     /gene="garR"
                     /locus_tag="JN078_003775"
     CDS             complement(2972..3862)
                     /gene="garR"
                     /locus_tag="JN078_003775"
                     /EC_number="1.1.1.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312030.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxy-3-oxopropionate reductase"
                     /protein_id="HAY9042808.1"
                     /translation="MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAA
                     GAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLA
                     SREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV
                     HTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLD
                     AKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLGT
                     ADHSALACYYEKLAKVEVTR"
     gene            complement(3892..4662)
                     /gene="garL"
                     /locus_tag="JN078_003776"
     CDS             complement(3892..4662)
                     /gene="garL"
                     /locus_tag="JN078_003776"
                     /EC_number="4.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxyglucarate aldolase"
                     /protein_id="HAY9042809.1"
                     /translation="MNNDVFPNKFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWL
                     VLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVET
                     KEEAEQAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDN
                     VDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAP
                     VEADARRYLEWGATFVAVGSDLGVFRSATQKLADTFKK"
     gene            complement(4678..5976)
                     /locus_tag="JN078_003777"
     CDS             complement(4678..5976)
                     /locus_tag="JN078_003777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005155249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9042810.1"
                     /translation="MHTRYLILLIIFIVTAVNYADCATLSIAGTEVAKELQLSTVSMG
                     YIFSAFGWAYLLMQIPGGWLLDKFGSKKVYTYSLFFWSLFTFLQGFVDMFPLAWAGIS
                     MFFMRFMLGFSEAPSFPANARIVAAWFPTKERGTASAIFNSAQYFSLALFSPLLGWLT
                     FAWGWEHVFTVMGVIGFVLTALWIKLIYNPTDHPRMSAEELKFISENGAVVDMDHKKP
                     GSAAASGPKLHYIKQLLSNRMMLGVFFGQYFINTITWFFLTWFPIYLVQEKGMSILKV
                     GLVASIPALCGFAGGVLGGVFSDYLIKRGLSLTLARKLPIVLGMLLASTIILCNYTNN
                     TTLVVMLMALAFFGKGFGALGWPVISDTAPKEIVGLCGGVFNVFGNVASIVTPLVIGY
                     LVSELHSFNAALVFVGCSALMAMVCYLFVVGDIKRMELQK"
BASE COUNT         1595 a         1610 c         1349 g         1448 t
ORIGIN      
        1 gactcgtttc ttcgtctgga ttttttaggt tataacgccc aaattattca acgatcggac
       61 aatacctgcg aacttaccat taatgaaccg ttaaaaaacc aggaaatatc tacaggcaat
      121 atcaatgcta attgtccatt aaaagatatt tacaatgaaa tcaggaggtt gaacgcaacc
      181 tttagttgtg ggactggaga tatagttgat ctatcctctc tggacttacg taatgtcgat
      241 ttagattatt atgatttcac agataaacat atggctaata ctattctaaa tccttttaaa
      301 ttggattcaa caaattttac taatgccaac atgtttcagg ttaattttgt tagttcaaca
      361 caaaacgcca caatctcctg ggattattta ctaaaaataa cgcctgtttt aataagtatt
      421 agcgatatgt attctgaaga aaaaatcaag tttgtcgaaa gttgtttaaa tgagcttgga
      481 gacattaccg aagaacaatt aaaaattatg agatttgcaa ttataaaatc tataccaagg
      541 gcaactctta cagataaatt agaaaatgaa ttaacaaaag aaatatataa aagctcatcg
      601 aaaatcaaca attgcttgaa cagaattaaa ttaccagaga tgaaagaatt ctcatcaaga
      661 aaaaacatat gattacatcg atataatcat tgaagattat gaaaatatca aagaaaatgc
      721 ttatctggtc gtcccccaaa ttaattatac tatggattta aacatagaag actccagctc
      781 agaagagtta ataccctcga gaaagacgaa aattcttcgg acaatggctt tgaagtcgaa
      841 gaatataacg catatgaagc atataactca gagaatctat attttaccag agaggaatat
      901 acgtatgatt acgacctttc aaatgcaata tagacttaat aacttcttac aaaatctata
      961 attaataccg tagatattca ttcatcttac cctgtgcacc aaaagcaaaa actcactgac
     1021 gcgggtttga aactgatggc aaccgcaaaa atgcctgatg cgctacgctt atcaggccta
     1081 cgccatctct gcaatatatt gaatttgcgt gcttttgtag gcaggataag gcgttcacgc
     1141 cgcatccggc atgaataaag cgcactcaac aatctgaaac ccgccggaac ggtttattac
     1201 gtacatcagg tgaaactgac cgataagccg ctttcttttg ggtatagtgt cgtggacagt
     1261 cattcatctt tctgcccctc caaaagcaaa aacccgccga agcgggtttt tacgtaaatc
     1321 aggtgaaact gaccgataag ccgggttctg tcgtggacag tcattcatct aggccagcaa
     1381 tcgctcactg gctcaagcag cctacccggg ttcagtacgg gccgtacctt atgaacccct
     1441 atttggcctt gctccgggtg gagtttaccg tgccacggac tgttaccagc cgcgcggtgc
     1501 gctcttaccg caccctttca cccttacctg atcccgcttg cgcgggccat cggcggtttg
     1561 ctctctgttg cactggtcgt gggtttcccc cccaggcgtt acctggcacc ctgccctatg
     1621 gagcccggac tttcctcccc tccgcccgtc tcccccgaag aggacgacga cgaagcggcg
     1681 actgtctggt cagcttcggc gcgcagtata gagggtttgc gcgcccttgt caccccgcgt
     1741 tgcgcattcc aatcgccagt gtcgcggcga tattacgtga agcacggcag atattgtcat
     1801 aagccccgcg gaatgcttcg tccaacgtac ctatgctggt caatacgctg aagaccgcat
     1861 caatgccatg ctgatgtaca acgccaacat catcggtcag gctacccgca atgccaatca
     1921 ccggtttatg gtacttcttc gccacgtttg cgacaccaat cggtaccttg ccgtgaatac
     1981 tctggctgtc aatacgccct tcaccggtga tcaccagcgt acaatcgtga atatgttctt
     2041 ccagattcag cgccgtagtg acgatttcaa taccactttt cagttccgca ccaagaaacg
     2101 ccatcagcgc cgcgcccata ccgcccgcag ctcctgcgcc ggggacatct ttcacatcaa
     2161 catgcagcgc ttttttaatg acctcggcat agtgagagag gttattgtcc agctcaacaa
     2221 tcatcgcttc actggctccc ttttgtgggc caaagatgcg cgatgcgccg ttatcgccca
     2281 ccagcggatt ggtgacatca caagcgacgc gaatgacgca atcttttaag cgcggatcga
     2341 ggccggaaat atcaatatca ttcagagtat taagactacc gccgccaaaa ccaatttcat
     2401 tgccgttggc gtcgcataat ttcgccccca gcgcctgtac catgcctgcg ccgccatcat
     2461 ttgtagcgct gccgccaatg ccgataataa tgtttgtcgc accgctctcc agcgcctgca
     2521 ggattaactc gcctgtgccg cgtgaagtgg tcacgagtgg atcgcgtttt tccgcaggta
     2581 ccagctccag cccactggcc gccgccattt caataaacgc ggttttgcca tcgccggaga
     2641 tcccccaact ggcattcact ttctcgccca acggccctgt aacccaggcg tgacgttcgg
     2701 aaccctgggt ggctgcaatc atcgcttcca ccgttccttc gccaccgtcg gcaaccggaa
     2761 cagaaacgta ctgtgcatca ggaaaaattt cccgaaatcc tttttctatc gcctgcgcaa
     2821 cctcgctggc agataaactt tctttataag agtctggggc gattacgatt ttcataccta
     2881 tgcctgttac cacatgacgc cggagggcgt ttctcttatt cggcgtggat tccaggcccg
     2941 gattgcaata cgccatccgg gcacgacgtc attaacgagt aacttcgact ttcgccagtt
     3001 tttcgtagta gcacgccaga gcgctatgat ccgccgttcc taaaccatct gcacgcagtg
     3061 cctgcatcat ctccataacc gcagctgtga gcggcagttg cgcgccgacg ccgtgagaag
     3121 tatccagcgc attcgccaga tccttaatat gcagatcaat gcggaagccc ggcttgaagt
     3181 tgcggtccat caccatcggc gctttggcat ccagcacggt actgcccgcc agcccaccgc
     3241 gaattgcctg ataaaccagg tctgggttaa cgcccgcttt agttgccagc gttaacgctt
     3301 ctgacatcgc agcaatattc agcgccacaa tgacctgatt tgccagtttg gtgacgttac
     3361 ctgcaccgat ttccccggta tgcaccacgg aacccgccat cgctttcatc aaatcatagt
     3421 atttgtcgaa aatagccttg tcgccgccca ccatcactga cagcgtaccg tcgatggctt
     3481 tcggttcacc gccgctcacc ggagcatcca gcatatcaat gcctttcgct ttcagcgctt
     3541 cgctgatttc acggcttgcc agcggtgcga tagaactcat atcgatcaat accgtacctg
     3601 gcttcgcgcc ttcaataatg ccattctcac ccagcgccac ctctttcaca tgaggggagt
     3661 ttggcagcat ggttatgatg acgtcgcact gttcagcgat cgctttagcc gtagacgctg
     3721 tttctgcacc tgcagcaatc acgtcagcaa tagcttctgg gttacggtca gcaaccacca
     3781 gcgagtaacc tgctttcaga aggtttttac tcattggttt acccataatc cccaggccaa
     3841 taaaaccaac tttcatagtc atatcaatca tctctcttgt tgcggtggtg gttatttttt
     3901 aaaggtatca gccagtttct gagtggcaga gcggaagacg ccaagatcgc tgccgacagc
     3961 cacaaacgtc gcgccccatt ccagataacg acgcgcatcg gcttcgaccg gcgcgagaat
     4021 accgctgggt ttgccgtgcg cactggcacg gttaaaaata tgctgaattg ctttttgtac
     4081 atccggatgc gaggcattgc cgagatggcc caatgccgca gccagatcgc tggggccgac
     4141 gaagataccg tctacacctt cggtagcggc aatagcatcg acgttatcta cgccctgctg
     4201 actttctatc tggaccagaa tagtgatgtt cttgttcgac tgagcgaaat aatccgccac
     4261 ggtgccaaac atattggcgc ggtgagaaac ggagacgccg cgaatgcctt ccggcgggta
     4321 acgagttgat gccaccgcct gctctgcttc ctcttttgtt tctacaaaag gaatcaggaa
     4381 attatagaaa ccgatatcca gaagacgctt aataattacc ggctcgttgg tcggcactcg
     4441 cactactggc gcgctggcgc tgcctttcag ggccattaac tgcggaataa acgtggaaat
     4501 atcgtttggc gcatgttcgc catccagcac cagccagtca aacccagcca aaccaagaac
     4561 ttcagtgcta atcgggttag agagtgctga ccagcaacca atttgtacct gtttcgcagc
     4621 cagtgcggct ttgaatttat tcgggaaaac atcgttattc atcgcttata cctttgctta
     4681 tttctgcaat tccatacgtt taatgtcgcc aactacgaag aggtagcaga ccatcgccat
     4741 cagcgctgaa catcccacga aaaccagtgc tgcattgaag gagtgcagtt cacttaccag
     4801 gtagccaatc accagtggag tgacaatgga ggcaacattg ccaaagacgt taaagacgcc
     4861 gccacagagg ccaacaatct ctttcggcgc ggtgtcagaa atcaccggcc agcccagagc
     4921 accaaatcct ttgccaaaaa aagccagcgc catcagcatg accaccagcg tggtgttgtt
     4981 ggtgtagtta cataagatga tggtggaagc cagcaacatt cccagcacaa tcggtagctt
     5041 acgtgccagg gtcagggata aaccgcgttt gatcagataa tccgagaaga cacctcccag
     5101 cacgccgccc gcaaaaccac acagtgccgg aatcgaggcg accagaccca ctttcagaat
     5161 cgacatgcct ttttcctgca ccagataaat cgggaaccag gtgaggaaga accaggtgat
     5221 ggtgttgata aaatattgtc cgaaaaatac gcccaacatc atgcggttag agagcaattg
     5281 cttgatgtaa tgcagtttgg gaccgcttgc tgccgcgctg cccggctttt tgtggtccat
     5341 atcgaccacc gcgccatttt cagagataaa cttcagctct tccgcagaca tacgtgggtg
     5401 atctgtcggg ttataaatca acttgatcca cagcgccgtc agcacaaaac caatcacccc
     5461 cataacggtg aagacgtgct cccagcccca ggcgaaagtc agccagccaa gcagaggcga
     5521 aaagagcgcc agcgagaaat attgcgccga gttaaagatg gcggaggcag taccacgttc
     5581 tttcgtcggg aaccaggcgg cgacaatacg ggcgttcgcc gggaatgatg gcgcttccga
     5641 gaagccgagc ataaagcgca taaagaacat agagatccct gcccaggcca gcgggaacat
     5701 atcaacaaag ccttgcagga aggtgaatag cgaccagaaa aagaggctgt aggtgtaaac
     5761 ttttttcgag ccaaacttat caagcagcca gccgccggga atttgcatca gcaggtaggc
     5821 ccagccaaaa gcggagaaga tgtaacccat cgaaaccgta cttaactgca actcttttgc
     5881 cacttcggta ccagcaatag acagcgttgc acaatcggcg tagttaacgg cggtaacaat
     5941 aaaaataatc agtaatatta aatagcgggt atgcacgcct ttctttttta cgtcaacggt
     6001 gt
//
LOCUS       DADMJB010000204         5946 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.207, whole genome shotgun sequence.
ACCESSION   DADMJB010000204 DADMJB010000000
VERSION     DADMJB010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5946
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.207"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(1..391)
                     /locus_tag="JN078_003778"
                     /pseudo
     CDS             complement(1..391)
                     /locus_tag="JN078_003778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_151035092.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus outer membrane usher protein"
     gene            complement(577..3885)
                     /gene="icsA"
                     /locus_tag="JN078_003779"
                     /gene_synonym="virG"
     CDS             complement(577..3885)
                     /gene="icsA"
                     /locus_tag="JN078_003779"
                     /gene_synonym="virG"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane autotransporter IcsA"
                     /protein_id="HAY9042811.1"
                     /translation="MNQIHKFFCNMTQCSQGGAGELPTVKEKTCKLSFSPFVVGASLL
                     LGGPIAFAIPLSGTQELHFSEDNYEKLLTPVDGLSPLGAGEDGMDAWYITSSNPSHAS
                     RTKLRINSDIMISAGHGGAGDNNDGNSCGGNGGDSITGSDLSIINQGMILGGSGGSGA
                     DHNGDGGEAVTGDNLFIINGEIISGGHGGDSYSDSDGGNGGDAVTGVNLPIINKGTIS
                     GGNGGNNYGEGDGGNGGDAITGSSLSVINKGTFAGGNGGAAYGYGYDGYGGNAITGDN
                     LSIINNGAILGGNGGHWGDAINGSNMTIANSGYIISGKEDDGTQNVAGNAIHITGGNN
                     SLILHEGSVITGDVQVNNSSILKIINNDYTGTTPTIEGDLCAGDCTTVSLSGNKFTVS
                     GDVSFGENSSLNLAGISSLEASGNMSFGNNVKVEAIINNWAQKDYKLLSADKGITGFS
                     VSNISIINPLLTTGAIDYTKSYISDQNKLIYGLSWNDTDGDSHGEFNLKENAELTVST
                     ILADNLSHHNINSWDGKSLTKSGEGTLILAEKNTYSGFTNINAGILKMGTVEAMTRTA
                     GVIVNKGATLNFSGMNQTVNTLLNSGTVLINNINAPFLPDPVIVTGNMTLEKNGHVIL
                     NNSSSNVGQTYVQKGNWHGKGGILSLGAVLGNDNSKTDRLEITGHASGITYVAVTNEG
                     GSGDKTLEGVQIISTDSSDKNAFIQKGRIVAGSYDYRLKQGTVSGLNTNKWYLTSQMD
                     NQESKQMSNQESTQMSSRRASSQLVSSLNLGEGSIHTWRPEAGSYIANLIAMNTMFSP
                     SLYDRHGSTIVDPTTGQLSETTMWIRTVGGHNEHNLADRQLKTTANRMVYQIGGDILK
                     TNFTDHDGLHVGIMGAYGYQDSKTHNKYTSYSSRGTVSGYTAGLYSSWFQDEKERTGL
                     YMDAWLQYGWFNNTVKGDGFTGEKYSSKGITGALEAGYIYPTIRWTTHNNIDNALYLN
                     PQVQITRHGVKANDYIEHNGTMVTSSGVNNIQAKLGLRTSLISHSCIDKETLRKFEPF
                     LEVNWKWSSKQYGVIMNGMSNHQIGNRNVIELKTGVGGRLADNLSIWGNVSQQLGNNS
                     YRDTQGILGVKYTF"
     gene            4414..5616
                     /gene="virA"
                     /locus_tag="JN078_003780"
     CDS             4414..5616
                     /gene="virA"
                     /locus_tag="JN078_003780"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858314.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-tubulin-specific protease"
                     /protein_id="HAY9042812.1"
                     /translation="MQTSNITNHERNDSSWMSTVKSTTEVSWNKLSFCDVLLKIITFG
                     IYSPHETLAEKYSEKKLMDSFSPSLSQDKMDGEFAHANIDGISIRLCLNKGICSVFYL
                     DGDKIQSTQLSSKEYNNLLSSLPPKQFNLGKVHTITAPVSGNFKTHKPAPEVIETAIN
                     CCTSIIPNDDYFPVKDTDFNSVWHDIYRDIRASDSNSTKIYFNNIEIPLKLIADLINE
                     LGINEFIDSKKELQMLSYNQLNKIINSNFPQQDLCFQTEKLLFTSLFQDPAFISALTS
                     AFWQSLHITSSSVEHIYAQIMSENIENRLNFMPEQRVINNCGHIIKINAVVPKNDTAI
                     SASGGRAYEVSSSILPSHITCNGVGINKIETSYLVHAGTLPSSEGLRNAIPPESRQVS
                     FAIISPDV"
     gene            5795..>5946
                     /locus_tag="JN078_003781"
     CDS             5795..>5946
                     /locus_tag="JN078_003781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY9042813.1"
                     /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWAAICSIAPKIGCIL
                     ETLRVWV"
BASE COUNT         1834 a         1341 c         1002 g         1769 t
ORIGIN      
        1 aggctgtacg cttccccatg tgatttgcct cgccacttca ccgggctcag gaccccgtag
       61 gatcttcacc gaaaaaaatg catcaccagt tgctttatta tttgttttag gtagacctgt
      121 tactaattta tacctactct gaccaagtct ggataagaaa ggcacacctg cacatttcta
      181 cttggaaatg ttttctttta ccattttgct caaaaatttc aacatccaat attcctcgta
      241 cagaactact caagtcctga atagaaaaag ttccagctgg tacagtagag tcatatattg
      301 ctcgaccttg ttgagataca acaacacgtg cattagtttc tgcaatacca gtaatctgag
      361 gcgcataacc acgaatattt ggcggtagca ttcgttcatc gctttctaat gcaattcctg
      421 tgtaacgcca agcaacagcg cattctggcg catgatctgg taaacacgtt tggcattgat
      481 cgcaggcata ccatcatgtg cacaaaaacc caccgagctt ttacacggtg ggtcccagag
      541 aaatgcagga catcaacacg ccctgcattt ttattatcag aaggtatatt tcacacccaa
      601 aataccttgg gtgtctctgt aactgttatt acccaattgc tgagatacgt ttccccagat
      661 gcttaggtta tctgcaagac gcccccccac accagttttg agttcaatca cattacggtt
      721 gcctatctgg tgatttgaca tgccattcat aattacacca tattgctttg agctccattt
      781 ccaattcact tccaaaaatg gttcgaactt acgaagagtc tccttatcga tacaactatg
      841 actaattaag gatgtacgca atcccaattt tgcttgaata ttattgaccc cagaggatgt
      901 gaccatagtg ccattgtgtt caatatagtc gtttgctttt accccatgcc tagttatctg
      961 gacttgtgga ttgagataca atgcgttgtc aatattatta tgagtagtcc agcgtatggt
     1021 tgggtagata tagccagctt ccaaagctcc tgttattcct ttgctggaat atttctcacc
     1081 agtaaaccca tctcctttga ctgtattatt aaaccaaccg tactgcaacc aagcatccat
     1141 atatagacct gttcgttctt tttcatcctg aaaccaagaa ctgtacaaac cggcagtata
     1201 accgctcaca gttcctcgtg aactataact agtatactta ttatgagttt tgctatcctg
     1261 atatccataa gctcccataa tacccacatg caagccatca tgatcagtga agtttgtctt
     1321 caaaatatct ccaccaatct gataaaccat cctgttagct gtggttttta attgtctatc
     1381 agctaaatta tgctcattat gtccaccaac agtacgaatc cacatggtgg tttcgctgag
     1441 ctgacctgta gtaggatcaa caatagtgct accgtgtcgg tcatagagag aaggactaaa
     1501 catcgtgttc attgctatca ggttagcaat ataactgcca gcttcagggc gccatgtgtg
     1561 aatactacct tcacccaaat taagtgaaga tacaagctgt gaactagctc ggcgactact
     1621 catttgagta gactcttgat tgctcatctg ttttgattct tgattatcca tctgactagt
     1681 tagataccac ttattggtat tcagtccaga tacagtgccc tgtttcaggc gatagtcata
     1741 actaccagca acaatacggc ctttctgaat aaaagcattc ttatcagaag aatctgtcga
     1801 aataatttga acaccttcaa gagttttatc tccagagcct ccctcatttg tcactgcaac
     1861 ataggtaata ccagacgcat ggcctgtaat ttccagccgg tcagttttac tgttgtcatt
     1921 gccgagaacc gcgcccaaag ataatattcc gccctttcca tgccaattac ctttctgaac
     1981 ataggtctga ccgacatttg acgaactatt attgagaata acatgaccgt ttttctccag
     2041 agtcatgtta cctgtgacaa tgacggggtc aggcaaaaaa ggggcattaa tattattgat
     2101 tagcacagtc ccactattta ataaagtgtt aacagtttgg ttcatgcctg aaaaattcaa
     2161 ggtagcacct ttattaacaa taacaccagc ggtacgtgtc atagcttcaa ctgtccccat
     2221 ttttagaatg cctgcattga tgttggtgaa accagagtag gtattttttt ccgccaaaat
     2281 gagagttccc tcccctgatt ttgttaggga ttttccgtcc cagctattta tattatgatg
     2341 gctgagatta tctgccagaa tagtactaac agtaagttca gcgttttctt tcagattgaa
     2401 ctctccatga ctgtcgccat ctgtatcatt ccagctcaaa ccgtagatca atttattctg
     2461 gtcactgata tagctttttg tatagtcaat agcaccagta gtgagtaacg gattgatgat
     2521 agatatatta gaaacactga aacctgttat ccctttatct gcacttagca gtttatagtc
     2581 cttctgcgcc cagttattta taatagcttc cacttttaca ttgttgccaa atgacatatt
     2641 tccagaagct tccagactac tgattccagc taaatttaaa gaactgttct caccaaaaga
     2701 aacgtcacct gaaacagtga atttgttacc tgatagtgaa acagttgtac aatcaccagc
     2761 acataaatca ccttcaatag ttggtgtggt cccagtgtaa tcattgttga taattttcag
     2821 aatggatgaa ttgttaacct gtacatcacc agtaatgaca gaaccttcat ggagtattaa
     2881 tgaattgttt ccaccagtga tgtggatagc attacctgct acattttgtg ttccatcatc
     2941 ttctttacct gaaattatat atccgctatt agcaatggtc atattgctac catttatagc
     3001 atccccccaa tgtccaccat taccgcctaa aatagctcca ttgttgatta tagacaggtt
     3061 atctcctgtg atagcattac caccgtagcc atcataacca taaccgtaag cagcacctcc
     3121 gttgcctcca gcgaacgtgc ccttattgat tacagagagg ctgcttcctg tgatggcatc
     3181 acctccatta ccgccatcac cctcaccata attgttacct ccattaccac cggaaatagt
     3241 ccctttgttg attatgggta gattgactcc tgtgacggca tcacctccat tccccccatc
     3301 actatcacta taactatcgc caccatgtcc acctgaaata atttctccat ttattataaa
     3361 cagattgtct cctgtaacag cctcaccacc atcaccgtta tggtcagcac cgctaccgcc
     3421 gctaccacca agaatcatgc cttgattgat tatagacaag tcagatccgg taatagagtc
     3481 accaccatta ccgccacaac tattaccatc attattatca ccagcaccac catgacctgc
     3541 gctaatcata atatcagagt taatccgtag cttagttcta gatgcatgag aggggttgga
     3601 agaagttata taccacgcat ccattccatc ttcaccagct cccaagggag aaagtccatc
     3661 aacaggtgtt aataattttt cataattgtc ctctgaaaaa tgaagttctt gagtacccga
     3721 aagaggaata gcaaaagcta ttggcccccc gagcaacagg gatgcaccaa caacaaaagg
     3781 agaaaaagac aatttgcatg ttttttcctt taccgtaggt aattctccgg cccccccctg
     3841 tgaacattgg gtcatattac aaaaaaattt gtgaatttga ttcatgcact atattatcag
     3901 taagtggttg ataaacccct aaaaagattc cgttttatcc ggaataaagg gacgatatat
     3961 gcaaaaacat attaaacaaa gcctcaacca aaacatgaga gctgtgttat atatcaatgc
     4021 aacgggagaa atttacctgt gtcttgcttt gaaaaaaaga gggggaaagc tatatgttcg
     4081 ataataaatt aataatttta ctatgatagt ctgcttcaga ccgcaacttt tcagttcttt
     4141 ctgtacgctt gcccaaagtt taaccacttt gtttttctat acacccaatg gttctatctg
     4201 ccccttgatg ttaatcccca aagccaataa catgaatgta ttcatatcac aactttccta
     4261 ccagactctc caatgcaata actgcataat tgtttttagt ggaaatgtat cgttttctta
     4321 aagagaagaa taacattcca ttttattatg ttcccaattt aattatatta atatatattg
     4381 gcatcaatag gaaaatacat caggagaaat caaatgcaga catcaaacat aactaaccat
     4441 gaaagaaatg actcatcatg gatgtcaact gtcaaatcaa ctacagaagt aagttggaat
     4501 aaattgagtt tttgtgacgt tttactgaaa ataataactt tcggaatata ttctccacac
     4561 gaaactctag ccgaaaaata tagcgaaaaa aaactaatgg atagtttctc accatcacta
     4621 tcacaagata aaatggacgg agagtttgcc cacgcaaaca tagatggcat ttcaatacgg
     4681 ctatgcctta acaaaggcat atgttcggtt ttttatcttg atggagataa aatacaatcc
     4741 actcaacttt catcaaaaga atataataac ttgttaagtt cactcccccc caaacaattc
     4801 aacttaggaa aagtacatac tattacagct ccggtatcag ggaattttaa aactcacaag
     4861 cctgcaccag aagttattga aacagccatt aattgctgta catcgataat accaaacgat
     4921 gattacttcc ccgttaaaga cactgatttt aatagtgttt ggcatgatat ttacagagat
     4981 attcgagcat ctgacagcaa tagtacaaaa atatatttca acaatattga aataccacta
     5041 aaattaattg cagatctaat taatgagtta ggaattaatg aattcattga tagcaaaaaa
     5101 gagcttcaaa tgctaagtta caaccaatta aataaaataa tcaattcaaa cttcccccaa
     5161 caagacctat gttttcaaac agaaaaactt ttgtttactt cactctttca agaccctgca
     5221 tttatatccg cactaacatc tgcattctgg caatctcttc acatcacgtc ttcctctgtg
     5281 gaacacatat atgcccaaat tatgtccgaa aacatagaaa acaggcttaa tttcatgcct
     5341 gaacaacgag ttattaacaa ttgtggacat attataaaaa tcaacgcagt tgtccctaaa
     5401 aacgacactg caatctctgc ctctgggggg agggcttacg aagttagctc atcaatatta
     5461 ccatcgcaca taacatgtaa tggtgttggt attaataaaa tagaaacaag ctatctcgtt
     5521 catgctggaa cacttccaag cagtgaaggg cttcgcaatg ctatccctcc agaaagtcgt
     5581 caagtatcat ttgccatcat atctcctgat gtttaagcca atattatatt ggctgccaga
     5641 ctgtaaaaaa acgttcttca gaacagctct ataaactatt aaaccaaagc taaaaggatg
     5701 gggaccaata gaatctcagc ccatcctttt tatatcatta tgaaccgccc cggaaatcct
     5761 ggagactaaa ctccctgaga aagaggtaaa caggatgact aaaaatacac gtttttcccc
     5821 tgaagtccgt caacgggcag ttcgtatggt tctggaaagt cagggcgaat atgactcaca
     5881 atgggcagcg atttgttcca ttgctccaaa gattggctgt atactggaga ctctgcgtgt
     5941 ctgggt
//
LOCUS       DADMJB010000205         5816 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.208, whole genome shotgun sequence.
ACCESSION   DADMJB010000205 DADMJB010000000
VERSION     DADMJB010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5816)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5816)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5816
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.208"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..857
                     /gene="pdeC"
                     /locus_tag="JN078_003782"
     CDS             <1..857
                     /gene="pdeC"
                     /locus_tag="JN078_003782"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="c-di-GMP phosphodiesterase PdeC"
                     /protein_id="HAY9042814.1"
                     /translation="FALPAGILGSLVLLLLWLRIRQNYLSPKRKLQRALEKHQLCLYY
                     QPIIDIKTEKCIGAEALLRWPSEQEQVMNPAEFIPLAEKEGMIEQVTDYVIDNVFRDL
                     GDYLATHADRYVSINLSASDFHTSRLIARINQKTEQYAVRPQQIKFEVTEHAFLDVEK
                     MTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDILKIDKSFVETLTTHKTSHLIA
                     EHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGWFFAKAMPPQVFMQWMEQLP
                     ARELTRGQ"
     gene            complement(860..1183)
                     /gene="soxS"
                     /locus_tag="JN078_003783"
     CDS             complement(860..1183)
                     /gene="soxS"
                     /locus_tag="JN078_003783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide response transcriptional regulator
                     SoxS"
                     /protein_id="HAY9042815.1"
                     /translation="MSHQKIIQDLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRT
                     VTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPSD
                     YRHRL"
     gene            1269..1733
                     /gene="soxR"
                     /locus_tag="JN078_003784"
     CDS             1269..1733
                     /gene="soxR"
                     /locus_tag="JN078_003784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensitive transcriptional activator SoxR"
                     /protein_id="HAY9042816.1"
                     /translation="MEKKLPRIKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSG
                     NQRRYRRDVLRYVAIIKIAQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREEL
                     DRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEEGTGARLLEDEQN"
     gene            2279..3628
                     /locus_tag="JN078_003785"
     CDS             2279..3628
                     /locus_tag="JN078_003785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HAY9042817.1"
                     /translation="MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVI
                     VVPGMLGKAGFPPAAVFVATCLVAGLGSIVMGLWANLPLAIGCAISLTAFTAFSLVLG
                     QHISVPVALGAVFLMGVLFTVISATGIRSWILRNLPHGVAHGTGIGIGLFLLLIAANG
                     VGLVIKNPLDGLPVALGDFATFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGL
                     IFDPNVHFSGVFGMPSLSDENGNSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTI
                     RAVAGQANLLDKDGQIIDGGKALTTDSMSSVFSGLVGAAPAAVYIESAAGTAAGGKTG
                     LTAITVGVLFLLILFLSPLSYLVPGYATAPALMYVGLLMLSNVAKIDFADFVDAMAGL
                     VTAVFIVLTCNIVTGIMIGFATLVIGRLVSGEWRKLNIGTVVIAVALVTFYAGGWAI"
     gene            3780..5429
                     /locus_tag="JN078_003786"
     CDS             3780..5429
                     /locus_tag="JN078_003786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="HAY9042818.1"
                     /translation="MEIFFTILIMTLVVSLSGVVTRVMPFQIPLPLMQIAIGALLAWP
                     TFGLHVEFDPELFLVLFIPPLLFADGWKTPTREFLEHGREIFGLALALVVVTVVGIGF
                     LIYWVVPGIPLIPAFALAAVLSPTDAVALSGIVGEGRIPKKIMGILQGEALMNDASGL
                     VSLKFAVAVAMGTMIFTVGGATVEFMKVAIGGILAGFVVSWLYGRSLRFLSRWGGDEP
                     ATQIVLLFLLPFASYLIAEHIGVSGILAAVAAGMTITRSGVMRRAPLAMRLRANSTWA
                     MLEFVFNGMVFLLLGLQLPGILETSLMAAEIDPNVEIWMLFTDIILIYAALMLVRFGW
                     LWTMKKFSNRFLKKKPMEFGSWTTREILIASFAGVRGAITLAGVLSIPLLLPDGNVFP
                     ARYELVFLAAGVILFSLFVGVVMLPILLQHIEVADHSQQLKEERIARAATAEVAIVAI
                     QKMEERLAADTEENIDNQLLTEVSSRVIGNLRRRADGRNDVESSVQEENLERRFRLAA
                     LRSERAELYHLRATREISNETLQKLLHDLDLLEALLIEENQ"
     gene            complement(5583..>5816)
                     /locus_tag="JN078_003787"
     CDS             complement(5583..>5816)
                     /locus_tag="JN078_003787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HAY9042819.1"
                     /translation="MFNTRLYRVNFDEASVQGMGISILRGEENIPIDSDTLVTLQKFF
                     EEDCTSHTGMSQTEDNINAVAMKITADIMQHAD"
BASE COUNT         1257 a         1376 c         1603 g         1580 t
ORIGIN      
        1 tttttgcgtt gcccgccggt attttgggga gtcttgttct gctattactc tggctacgta
       61 ttcgacaaaa ctatttgtct cccaaacgca aattgcaacg cgctctagaa aaacatcaac
      121 tttgtcttta ttaccagcca ataatcgata tcaaaacaga aaaatgtatc ggcgctgaag
      181 cgttgttacg ttggcctagt gagcaggagc aagtaatgaa tccggcagag tttattccgc
      241 tggcagaaaa ggaggggatg atagaacagg taactgatta tgttattgat aatgtcttcc
      301 gcgatctggg cgattacctg gcaacacatg cagatcgcta tgtttctatt aacctgtcgg
      361 cctccgattt tcatacgtca cggttgatag cgcgaatcaa tcagaaaaca gagcaatacg
      421 cggtgcgtcc gcagcaaatt aaatttgaag tgactgagca tgcatttctt gatgtcgaaa
      481 aaatgacgcc gattattctg gctttccgcc aggctggtta cgaagtggca attgatgatt
      541 ttggtattgg ctactctaac ttgcataacc ttaaatcatt gaatgtcgat attttgaaaa
      601 tcgataaatc gtttgttgaa acgctgacca cccacaaaac cagtcatttg attgcggaac
      661 acatcatcga gctggcgcac agcctggggt taaaaacgat cgctgaaggc gtcgaaactg
      721 aggagcaggt taactggctg cgcaaacgcg gcgtgcgcta ttgccaggga tggttttttg
      781 cgaaggcgat gccgccgcag gtgtttatgc aatggatgga gcaattaccc gcgcgggagt
      841 taacgcgcgg gcaataaaac tacaggcggt ggcgataatc gctgggagtg cgatcaaact
      901 gccgacggaa aacgcgggag aaggtctgct gcgagacata acccaggtcc attgcgatat
      961 caaaaatcgg acgctcggtg gtgcgcaact caacggcggc cagtaacagg cgacgttggc
     1021 gaatgtaatc gccaagcgtc tgatgcgtca ccgtgcggaa cattcgttgc aagtaccact
     1081 ttgaatagcc tgattttttt gcgactacat caatgttaag cggctggtca atatgctcgt
     1141 caatccatgc gataagatcc tgaataattt tctgatggga cataaatctg cctcttttca
     1201 gtgttcagtt cgttaattca tctgttgggg agtataattc ctcaagttaa cttgaggtaa
     1261 agcgatttat ggaaaagaaa ttaccccgca ttaaagcgct gctaaccccc ggcgaagtgg
     1321 cgaaacgcag cggtgtggcg gtatcggcgc tgcatttcta tgaaagtaaa gggttgatta
     1381 ccagtatccg taacagcggc aatcagcggc gatatagacg tgatgtgttg cgatatgttg
     1441 caattatcaa aattgctcag cgtattggca ttccgctggc gaccattggt gaagcgtttg
     1501 gcgtgttgcc agaagggcat acgttaagtg cgaaagagtg gaaacagctt tcgtcccaat
     1561 ggcgagaaga gttggatcgg cgcattcata ccttagtggc gctgcgtgac gaactggacg
     1621 gatgtattgg ttgtggctgc ctttcgcgca gtgattgccc gttgcgtaac ccgggcgacc
     1681 gcttaggaga agaaggtacc ggcgcacgct tgctggaaga tgaacaaaac taaagcgcca
     1741 caagggcgct ttagtttgtt ttccggtctt tgtctttctc tctatcccgc tggtacacag
     1801 gagggtttcc cccgacgtca acacacctca ttcgagcacg tggtggaggt tccggttggt
     1861 gttgatgctt taattgtatg tcaccgacgt ttcttcgcca gtgtaaaagt atacttttta
     1921 accgcaatat ttttgtcatc tcagacgatt ttttatcgca atcctgaacg gtatacggct
     1981 cgataacgct gcaatcttgc gcaccgacga taacgtttgc gcatcaattg cctgtttttt
     2041 catcgtcaag acaataaaag agaaaaaagc agcaaacttc ggttgaaaaa gccgctatga
     2101 tcgccggata atcgtttgct ttttttacca cccgttttgt atgcgcggag ctaaacgttt
     2161 gcttttttgc gacgcagtaa attgtcgcaa acctggagca ggaagataac gtttcgctgg
     2221 caggggattg tccgccacgc atcttgacga aaattaaact ctcaggggat gttttcttat
     2281 gtctacgcca tcagcgcgta ccggcggttc actcgacgcc tggtttaaaa tttcacaacg
     2341 tggaagcact gtccgtcagg aagtggttgc cgggttaaca acgtttctgg cgatggtcta
     2401 ctcggtcatc gtcgttccag gtatgttggg taaagcaggc ttcccgcctg cggcagtttt
     2461 cgttgcaacc tgtctggttg ccggactcgg ttctatcgtg atgggtctgt gggctaatct
     2521 gccgttggcg attggttgcg ccatctccct gacggcgttt accgcattca gcctggtgct
     2581 ggggcaacat attagcgtac ctgtcgcgct gggtgccgtg ttcctgatgg gtgtgctgtt
     2641 tacggtaatt tctgccacgg gtatccgtag ctggattttg cgcaacttgc cgcacggtgt
     2701 ggcgcacggc acggggatcg gtatcggtct gttcctgctg ctcattgccg ctaatggtgt
     2761 tggtctggtg attaaaaacc cgcttgatgg tctgcccgtt gcgctgggtg atttcgcgac
     2821 cttcccggtg attatgtcac tggtaggtct ggcggtgatc atcggcctgg aaaaactgaa
     2881 agtccctggt ggcattctgc tgaccattat cggtatctca attgtcggtt tgatcttcga
     2941 tcctaacgtc catttctccg gcgttttcgg catgccttca ttgagcgatg aaaacggcaa
     3001 ttcactgatt ggcagcctgg acattatggg cgcgctgaat cctgtagtcc tgccaagcgt
     3061 tctggcgctg gtgatgacgg cagtatttga tgccaccgga actatccgtg ccgtcgccgg
     3121 ccaggcgaac ctgctggata aagatgggca gatcatcgac ggtgggaaag cactgaccac
     3181 tgactccatg agcagcgttt tctctggcct ggtgggtgct gctccggcag cggtatacat
     3241 cgagtctgcg gcgggtacgg cggcgggcgg taaaaccggt ttgacggcta tcaccgttgg
     3301 cgtgctgttc ctgctgattc tgttcctctc tccgctctct tacctcgttc cggggtatgc
     3361 aacggctccg gcgctgatgt acgttggcct gctgatgctg agcaacgtgg cgaaaatcga
     3421 ctttgctgat tttgttgatg cgatggcggg tctggttacg gcggtattca tcgtgctgac
     3481 ctgtaacatc gtaacaggca tcatgatcgg cttcgcgact ctggtgattg gtcgtctggt
     3541 ttccggcgaa tggcgcaagt tgaacatcgg tacggtcgtt atcgccgtgg cgctggtgac
     3601 cttctatgcg ggtggctggg ctatctaatc tttcatcgga ttctgaaaac gggtggcaat
     3661 ggctgcccgt ttttattttc tccgcacatt gtgtgagctt ttgcgatatt ctgaaaaaat
     3721 gagaattcag gcataacgcc tttctcagat cataaaaaaa catcgcaaac agggaacgca
     3781 tggaaatctt cttcaccata ctgataatga ccctcgtggt ctcgctgtcc ggggtggtca
     3841 ctcgtgtcat gccctttcag atcccgcttc cgcttatgca aatcgccatc ggtgcgctac
     3901 tggcgtggcc gacgtttggt ttgcatgtgg agtttgatcc tgaactcttt ttagtcttgt
     3961 ttatcccgcc gttgctgttc gctgatggct ggaaaacgcc gacccgtgaa tttctcgaac
     4021 atggtcgaga gattttcggc ctcgcgctgg cgctggtggt ggtcaccgtg gtcggcattg
     4081 gcttccttat ttactgggtg gtgccgggca ttccgctgat ccccgccttt gcgctggcgg
     4141 cggtactttc tccgaccgat gctgtggcgc tctccggaat tgttggcgaa gggcgcatcc
     4201 cgaaaaaaat catgggcatt ttgcagggcg aagcgttgat gaatgacgcc tccggcctgg
     4261 tgtcgttgaa gtttgccgtg gcagtggcga tggggacgat gatcttcacc gtcggcggtg
     4321 cgacggtcga atttatgaaa gtagccattg gtggtattct tgccggtttt gtggtgagct
     4381 ggctgtatgg tcgctcgctg cgattcctca gccgctgggg cggtgatgaa cccgcgacgc
     4441 agatcgttct gctgttcttg ctgccattcg cttcttatct gattgccgaa catattggcg
     4501 tttccggcat cctcgctgcg gttgccgccg ggatgaccat cacccgctcc ggtgtgatgc
     4561 gccgtgcgcc gctggcaatg cgcctgcgcg caaacagcac ctgggcgatg ctggaatttg
     4621 tctttaacgg catggtgttc ctgctgttag gtctgcagct gccgggtatt ctggagacgt
     4681 cgctgatggc ggcagaaatc gaccctaacg tcgaaatctg gatgctgttt accgatatta
     4741 ttctgatata tgcggcgctg atgctggtcc gtttcggctg gctgtggacg atgaaaaagt
     4801 tcagcaaccg cttcctgaag aagaagccga tggagtttgg ttcgtggacc acacgagaaa
     4861 tcctgatcgc gtctttcgcc ggggtgcgtg gggcgatcac tctggccggt gtgctctcta
     4921 tcccgctgct cttgccggat ggtaacgtct tcccggcgcg ctatgagctg gtgttcctgg
     4981 cggctggcgt cattctcttc tcgctgtttg tcggtgtggt gatgttgcct attctgctac
     5041 aacacattga agtcgcggat cattcgcaac aattgaaaga ggaacgtatt gcgcgagcgg
     5101 caacggcaga agtggcgatt gtggcgatcc agaaaatgga ggagcgtctg gcggcggata
     5161 ccgaagagaa tatcgataac cagctgctta cggaggtcag ttctcgcgtc attggtaacc
     5221 tgcgtcgtcg cgccgatgga cgtaacgacg ttgaaagttc cgtgcaggaa gagaaccttg
     5281 agcgtcgctt ccgtctggcg gcattgcgtt ctgaacgtgc tgaactgtac cacctgcgcg
     5341 ccacgcggga gatcagcaac gaaacgctgc aaaaattact gcacgatctc gatttgcttg
     5401 aagcgttgct aattgaggaa aatcagtaag ccgaaagcga cgtaaccagg cccgaggtaa
     5461 tctgaaaaag gtgcaatctt ttgcaccttt aacaggttag ctcgggctaa cattcatgat
     5521 tctaaaacaa ataagttatc tctcttgtaa agtcaattca ttggctgttc ttcgacttaa
     5581 cctcaatctg cgtgttgcat aatatctgca gtaatcttca tagcgactgc attaatatta
     5641 tcctcagttt gtgacatgcc agtatgagag gtacaatctt cttcaaagaa tttctgtagt
     5701 gttaccaggg tatcactatc aatggggata ttttcctctc cacggagtat ggaaatgccc
     5761 attccctgga cgctagcctc atcaaaatta acccgataga gacgggtatt aaacat
//
LOCUS       DADMJB010000206         5791 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.209, whole genome shotgun sequence.
ACCESSION   DADMJB010000206 DADMJB010000000
VERSION     DADMJB010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5791)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5791)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5791
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.209"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(135..2063)
                     /gene="dhaR"
                     /locus_tag="JN078_003788"
     CDS             complement(135..2063)
                     /gene="dhaR"
                     /locus_tag="JN078_003788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase operon
                     transcriptional regulator DhaR"
                     /protein_id="HAY9042820.1"
                     /translation="MRDMSGAFNNDGRGISPLIATSWERCNKLMKRETWSVPHQAQGV
                     TFASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSA
                     LGFHDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQALWNWAFCATPLFDSKGRL
                     TGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDG
                     VISWDEQGNLQFINAQAARVLRLEATASQGRAITELLTLPAVLQQAIKQAHPLKHVEA
                     TFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDD
                     PQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGD
                     AALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITR
                     LDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPAL
                     VNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSD
                     LPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTL
                     WRKMKQHGIDAGQFKRRV"
     gene            2282..3391
                     /gene="dhaK"
                     /locus_tag="JN078_003789"
     CDS             2282..3391
                     /gene="dhaK"
                     /locus_tag="JN078_003789"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000733719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HAY9042821.1"
                     /translation="MKKLINDVQDVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVAG
                     KVALLSGGGSGHEPMHCGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLI
                     IKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLV
                     GAAAERGDSLDACAELGRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIH
                     GEPGIDRRSFSSLDQTVDEMFDTLLGNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGD
                     RVIALVNNLGATPLSELYGVYNRLTTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLK
                     VDDETLALWDAPVHTPALNWDKLGESNVTEQNSNC"
     gene            3363..3995
                     /gene="dhaL"
                     /locus_tag="JN078_003790"
     CDS             3363..3995
                     /gene="dhaL"
                     /locus_tag="JN078_003790"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase ADP-binding subunit
                     DhaL"
                     /protein_id="HAY9042822.1"
                     /translation="MSLSRTQIVNWLTRCGDIFSTESEYLTGLDREIGDADHGLNMNR
                     GFSKVVEKLPAIADKDIGFILKNTGMTLLSSVGGASGPLFGTFFIRAAQATQARQSLT
                     LEELYQMFRDGADGVISRGKAEPGDKTMCDVWVPVVESLRQSSEQNLSVPVALEAASS
                     IAESAAQSTITMQARKGRASYLGERSIGHQDPGATSVMFMMQMLALAAKE"
     gene            4006..5424
                     /gene="dhaM"
                     /locus_tag="JN078_003791"
     CDS             4006..5424
                     /gene="dhaM"
                     /locus_tag="JN078_003791"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415716.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaM"
                     /protein_id="HAY9042823.1"
                     /translation="MVNLVIVSHSSRLGEGVGELARQMLMSDSCKIAIAAGIDDPQNP
                     IGTDAVKVMEAIESVADADHVLVMMDMGSALLSAETALELLAPKIAAKVRLCAAPLVE
                     GTLAATVSAASGADIDKVIFDAMHALEAKREQLGLPSSDTEISDTCPAYDEEARSLAV
                     VIKNRNGLHVRPASRLVYTLSTFNADMLLEKNGKCVTPESINQIALLQVRYNDTLRLI
                     AKGPEAEEALIAFRQLAEDNFGETEEVAPPTLRPVPPVSGKAFYYQPVLYTVQAKSTL
                     TVEEEQDRLRQAIDFTLLDLMTLTAKAEASGLDYIAAIFSGHHTLLDDPELLAAASEL
                     LQHEHCTAEYAWQQVLKELSQQYQQLDDEYLQARYIDVDDLLHRTLVHLTQTKEELPQ
                     FNSPTILLAENIYPSTVLQLDPAVVKGICLSAGSPVSHSALIARELGIGWICQQGEKL
                     YAIQPEETLTLDVKTQRFNRQG"
BASE COUNT         1459 a         1475 c         1426 g         1431 t
ORIGIN      
        1 agcaagtcaa cggaggatat cgcttcagct tttaagtgcg tgatagacaa gcccttaaac
       61 gatgctgaaa aatgttagcg tgcgccggaa tgaaatatag atcactctga tgtattagaa
      121 atcgtttctg tctttcatac ccggcgctta aactgccctg catcaatgcc atgttgcttc
      181 attttccgcc acagcgtagt gcggccgatt ccaagtaaag ccgacatttc ctgaatgcga
      241 ccgcctgtga cctgggctgc gttaataatt gcctcttttt caacttccgc aaatgacaga
      301 ctggtggaaa ggcgggtggc gctgacatca tctgttgcct gctcggtaaa cagatgttcc
      361 ggcaaatcac tgacgcgaat gcgcccatta tcactactca gagcaagatt ctcgatgacg
      421 ctgtaaagtt caaaatcgtt gcctggccat gcacaagaaa ccaggcgagc gagggcatcg
      481 tcatcaattt tcagccgcgt agagaagcgt ttttcaagac tgcgtaattt gttattcacc
      541 agcgccggaa tgctgccacg ccgcatacgc agaggcggga tggtaatttc aaatgcatgc
      601 agcgcgtaat acagctggcg actaaaacga ttttgttcca ccagcattgc gaggtccgcg
      661 gtcgttgttg caatcacttt gacatcaatt ggtattaaac gccgcgcatc cagtcgcgtg
      721 ataacaccct gcttgataac ctgaagcaaa gcagactgta actccaccgc cagatattca
      781 atcttttcaa gaaacagcgt gccgccgtgc gccagttcca gccgactcag acggccattt
      841 tcattgtccg tacgatcgcc accaataaat tcttccgcca gtgccgcatc accatataac
      901 tcacaattga cggcgatata aggacctgca gcacgctcgc tttcattatg aattgcctga
      961 cttagcagtg ccttgcccac gccctcttct ccacaaagca ggacaggaaa gctactgcgc
     1021 gccgcctggc gaccaaaatg aatcaagcgg cgggtttgcg gatcgtcctg tggcatatga
     1081 gcaaaggtat ggctgacttt tcctaattga ctggtcatca actgccgcat ctgttccaca
     1141 ggatggagca acaaaataaa gctggttccc tgcgtttcta ttatcggttt aagggttatc
     1201 accgcatcaa taaactgatg ctgactttca aaggttgctt ctacgtgttt gagcggatgt
     1261 gcctgtttta ttgcttgttg caatacggcg ggtaacgtta agagttcagt gattgcccgt
     1321 ccctgacttg ccgtcgcttc aaggcgcaag acccgcgccg cctgggcatt gataaattgc
     1381 aaattaccct gctcgtccca gctaatcacg ccatcatcca tactttctaa cagggcatta
     1441 agttgattta aatgacggtt agtttcagcg agcaaactgt ccgtcagcag taaatttccg
     1501 acctcgcggg cgattgccaa cgtcaacggc aaatcagctg cggtagtttg ctcaaccgga
     1561 cacgccagcg ctattgttcc cgtcaatcgg cccttgctgt caaacaacgg cgttgcacaa
     1621 aaggcccagt tccagagtgc ctgtttgaaa tgttgatcgg ccatcgtttt cacggcctga
     1681 ccagagatag ccgctaacga tagcgcacaa gtaccaataa ttccctcggc gcaatacgtg
     1741 ccgtcatgga atccaagtgc acttagctgc tgcaaggttt gcggatcgcc attacggctg
     1801 agaatgcagg cggtttcatc gaggataaac agcgcacact ctcgcggtgc catatattcc
     1861 caggcatctt ccagcgcagc ctgcccgagc gtcagcatcg ctttcttacg ccgataaata
     1921 gaagcaaatg tcacgccctg ggcctgatgt ggtacgctcc atgtctcccg tttcatcagc
     1981 ttattgcatc gctcccagga ggttgcaatt aagggagata tgccccgacc atcgttgtta
     2041 aaagcgccac tcatatcccg catcccttat gacaaaaggt gttccggctc gcaattttaa
     2101 gtattaatac acgtaaaagt ttcaatatgg aacattcatt aaagcatatg tttcactatg
     2161 aaacataatt tgggctaatt ttcttttccc ttgcctgatg cacaatggat tcatcggcag
     2221 tcagtggtcg ccgtgtcgtt gaacatcatc catgccctac cgtaattgct ggagcaaaat
     2281 aatgaaaaaa ttgatcaatg atgtgcaaga cgtactggac gaacaactgg caggactggc
     2341 gaaagcgcat ccatcgctga cattgcatca ggatccggtg tatgtcaccc gagctgatgc
     2401 ccctgttgca ggaaaagtcg ccctgctgtc gggtggcggc agcggacacg agccgatgca
     2461 ctgtgggtat atcggtcagg ggatgctttc gggggcctgt ccgggcgaaa ttttcacctc
     2521 accgacgccc gataaaatct ttgaatgcgc catgcaagtt gatggcggcg aaggtgtact
     2581 gttgattatc aaaaattaca ccggcgatat tcttaacttt gaaacagcga ccgagttact
     2641 gcacgatagc ggcgtaaaag tgaccactgt ggtcattgat gacgacgttg cggtaaaaga
     2701 cagtctttat actgccgggc gacgcggcgt tgccaacacc gtattaattg aaaaactcgt
     2761 aggcgcagcg gcggagcgtg gcgactcact ggacgcctgt gcggaactgg ggcgtaagtt
     2821 gaataatcaa ggccactcaa taggtatcgc tctcggtgcc tgtaccgttc ctgccgcggg
     2881 caaaccttct tttaccctgg cggataatga gatggagttt ggcgtcggca ttcatggtga
     2941 gccgggtatt gaccgccgct ccttctcttc ccttgatcaa accgtcgatg aaatgttcga
     3001 caccctgctg ggaaatggct cataccatcg cactttacgt ttctgggatt atcaacaagg
     3061 cagttggcag gaagaacaac aaaccaaaca accgctccag tctggcgatc gggtgattgc
     3121 gctggttaac aatcttggcg caactccgct ttctgagctg tacggcgtct ataaccgcct
     3181 gaccacacgt tgccagcaag cgggattgac tatcgaacgt aatttaattg gcgcgtactg
     3241 tacctcactg gatatgaccg gtttctcaat caccttactg aaagttgatg acgaaacgct
     3301 ggcactctgg gacgccccgg tccacacccc ggcccttaac tgggataaat taggagaaag
     3361 caatgtcact gagcagaact caaattgtta actggctcac tcgttgtggc gatattttca
     3421 gcaccgagag cgagtatctt accggactgg atcgcgaaat tggcgacgct gaccacgggc
     3481 taaatatgaa ccgaggcttt agcaaagtgg tggaaaaact ccctgctatc gcagataaag
     3541 atatcggttt cattctcaag aataccggta tgacgctgct ttccagcgtc ggtggtgcca
     3601 gtggtccgct gttcggtacc ttctttatcc gcgccgcaca ggcgacccag gcacggcaaa
     3661 gcctgacact ggaagagctt tatcagatgt tccgcgatgg cgcggacggc gtaatcagtc
     3721 gcgggaaagc cgaacctggc gataaaacca tgtgtgatgt gtgggtgccg gtggtggaat
     3781 cgttacgtca gtccagcgag caaaatctct ctgttccggt ggcgctcgaa gctgccagta
     3841 gcatcgccga atccgctgca caaagtacga ttacgatgca agcccgcaaa ggccgcgcca
     3901 gttatctcgg tgaacgcagt attggtcacc aggatcccgg cgcgacctcg gtgatgttta
     3961 tgatgcaaat gttggcgtta gccgcaaaag agtaaggaat tggtgatggt aaacctggtc
     4021 atagtttcac atagcagccg actgggagaa ggtgtcggtg aattagcccg tcagatgtta
     4081 atgagtgata gttgtaaaat cgccattgcc gcgggaattg acgatccaca aaatcctatt
     4141 ggtaccgatg ccgtcaaagt gatggaggcc atcgaatctg ttgctgatgc cgaccatgtg
     4201 ctggtcatga tggatatggg tagcgcatta ttgagtgctg aaactgcgct ggaattgctg
     4261 gctcccaaga tcgccgcaaa agtacgtttg tgtgctgcgc cgttggtcga aggtacactg
     4321 gcagcaacgg tcagcgcggc ctcgggagcg gatatcgaca aagttatctt tgacgctatg
     4381 catgcgctgg aagccaaacg tgaacaactg ggtttaccgt cctccgacac tgaaatctct
     4441 gacacatgtc ctgcgtacga tgaagaagcc cgttctctgg cggtggtcat aaaaaaccgt
     4501 aacggcctgc atgtacgtcc ggcctcccgg ctggtttata ccttatcgac atttaatgcc
     4561 gatatgttgc tggaaaaaaa cggcaaatgc gtcacaccag agagtattaa ccagattgcg
     4621 ttactacaag ttcgctataa cgatacgctg cgcctgattg cgaaagggcc agaagctgaa
     4681 gaggcactga tcgctttccg tcagctggct gaagataact ttggtgaaac ggaggaagtc
     4741 gctccaccta ctctgcgtcc cgttccgcct gtttcgggta aagcctttta ttatcaacca
     4801 gttttatata cggtacaggc aaaatcaacc ctgaccgtgg aagaagaaca agatcgatta
     4861 cgccaggcta ttgacttcac gttattagat ctgatgacgt taacagcgaa agcagaagcc
     4921 agcgggcttg actatattgc cgcaatcttt tctggtcacc atacactgtt agatgatccg
     4981 gaactgctgg cggcggcaag cgaactcctt cagcatgaac attgcacggc agaatatgcc
     5041 tggcagcaag ttcttaaaga acttagccag caataccagc aactggatga tgaatatcta
     5101 caagctcgct atattgatgt ggacgatctt ctgcatcgca ccctggtcca cctgacccaa
     5161 acgaaagaag aactcccgca gtttaactcg ccaactattc tactggcgga gaacatttat
     5221 ccttccacag tactgcaact ggatccggcg gttgtaaaag gtatctgcct tagcgccgga
     5281 agtccggtat cccacagcgc cctaatcgcc cgtgaactgg ggattggctg gatttgccag
     5341 cagggtgaga aactgtatgc gatacaacca gaagaaacgc taacgctgga cgttaaaacg
     5401 caacgtttca accgtcaggg ttaagccact gttcggatgg catcgttctg atgtcatccg
     5461 gcaatttact cagcactaat ggtttttaac tacctgttat atttttcacc aatttatgat
     5521 gatttttctt cgctaatcac gaacccaacg ccgctggctg gctaataaac agacgttatt
     5581 tgatcactct atttcgccgt tatttatccc tttaattccc ttttctaaaa tgcctgacag
     5641 ttcgcagaat gagatttcga tcatgcagct agtgcgatcc tgaactaagg ttttctgata
     5701 cttgaatacc gttttattcg gtttcgccaa aggagaatga ttgatgaaat cccccgcacc
     5761 ttctcgcccg caaaaaatgg cgttaattcc a
//
LOCUS       DADMJB010000207         5753 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.210, whole genome shotgun sequence.
ACCESSION   DADMJB010000207 DADMJB010000000
VERSION     DADMJB010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5753
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.210"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(35..772)
                     /gene="bamD"
                     /locus_tag="JN078_003792"
     CDS             complement(35..772)
                     /gene="bamD"
                     /locus_tag="JN078_003792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HAY9042824.1"
                     /translation="MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQ
                     DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH
                     PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
                     TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLM
                     ENSYRQMQMNAQAEKVAKIIAANSSNT"
     gene            907..1887
                     /gene="rluD"
                     /locus_tag="JN078_003793"
     CDS             907..1887
                     /gene="rluD"
                     /locus_tag="JN078_003793"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017383977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HAY9042825.1"
                     /translation="MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQR
                     VLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIVINKPRDL
                     VVHPGAGNLDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVE
                     SLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF
                     RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDR
                     QALHATMLRLYHPISGIEMEWHAPIPEDMVELIEVMRADFEEHKDEVDWL"
     gene            1884..2615
                     /gene="pgeF"
                     /locus_tag="JN078_003794"
     CDS             1884..2615
                     /gene="pgeF"
                     /locus_tag="JN078_003794"
                     /EC_number="1.10.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase"
                     /protein_id="HAY9042826.1"
                     /translation="MSKLIVPQWPLPKGVAACSSTRIGGVSLPPYDSLNLGAHCGDNP
                     EHVEENRKQLFAAGNLPSKPVWLEQVHGKDVLKLTGEPYASKRADASYSNTPGTVCAV
                     MTADCLPVLFCNRAGTEVAAVHAGWRGLCAGVLEETVSCFADKPENILAWLGPAIGPR
                     AFEVGAEVREAFMAVDAKASAAFIQHGDKYLADIYQLARQRLANVGVEQIFGGDRCTY
                     TENETFFSYRRDKTTGRMASFIWLI"
     gene            2745..5318
                     /gene="clpB"
                     /locus_tag="JN078_003795"
     CDS             2745..5318
                     /gene="clpB"
                     /locus_tag="JN078_003795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002461515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HAY9042827.1"
                     /translation="MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGG
                     SVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRG
                     DNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA
                     LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG
                     LAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF
                     IDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQ
                     KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAID
                     LIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSD
                     KERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPE
                     LEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQEL
                     HHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFD
                     SDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA
                     HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKEL
                     VLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDE
                     ALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAV
                     Q"
BASE COUNT         1449 a         1366 c         1549 g         1389 t
ORIGIN      
        1 ctcaagggct gccgttttgt gtttcaggtt tctgttatgt attgctgctg tttgcggcga
       61 tgattttcgc tactttttca gcttgcgcat tcatctgcat ctgacggtat gaattttcca
      121 tcagtggcag cgcatcacgc gtagcctggg tatccgggta gtcgcgcaac atgccttcta
      181 cgcggttaac gacggcaacc catgcaccac gttctgtata gtactcggca acggagtatt
      241 catatttcgc cagacgatct ttcaggaata ccagacgttt ggttgcatcg gtagtgtact
      301 gactgttcgg atagccgcgc accagtttgg aaaagtcact aaacgcagct cgtgcatgtt
      361 gaggatcgcg atcgctacgg tcaacgccaa agaacccttg cagcgcactg tcatccagcg
      421 ccatattggt caggccacgc atgtacatga cataatcgat attcggatgg gtcgggttaa
      481 ggcgaataaa acgatcgatg gcagcctgtg ctaacggcaa atcggcgttt ttatagtagg
      541 cgtagatgag atccagctgc acctgctgcg aatacggacc aaacggatag cgattatcta
      601 atgcttccag ttgcgttatt gcctgtctcc agttaccgtc ctgcagcttt tgttgtgcag
      661 tcgcgtaaat ttcatttggt ggattatcag gtacttcttc ctttgacccc gagcaacccg
      721 ccaaaaacag gcttagtgtg gcggctgcca ccagatattt catgcgcgtc atgacgtttt
      781 gactttcctc aaaatgtaat acgggagatt ctctgttcct gctcccggtt aagaccagct
      841 acaatagcac actatattaa acggcaaagc cgtaaaaccc caacgataaa cgaagaagca
      901 gtatatatgg cacaacgagt acagctcact gcaacggtgt ccgaaaacca actcggtcaa
      961 cgcttagatc aggctttggc cgaaatgttc ccggattatt cacgttcgcg aataaaagaa
     1021 tggatcctcg accagcgcgt gctggtaaac ggcaaagttt gtgataagcc gaaagaaaaa
     1081 gtattgggtg gcgagcaggt tgccatcaac gctgagattg aagaagaagc gcgttttgaa
     1141 ccgcaggata tcccgctgga tatcgtctat gaagatgaag atatcatcgt cattaataaa
     1201 ccgcgcgacc tggtggtaca tcctggcgcg ggtaacctgg atggcacggt actgaatgcg
     1261 ttgcttcatt attatccgcc cattgccgat gtaccgcgtg cgggcatcgt ccatcgtctg
     1321 gataaagaca ccactggcct gatggttgtg gcaaaaaccg ttccggctca gacgcgttta
     1381 gtcgaatctt tgcaaaggcg tgaaattact cgtgagtatg aagcggtggc aattggtcat
     1441 atgaccgctg gcggtacagt agatgaacca atcagccgcc acccgaccaa acgtactcac
     1501 atggcggtgc atcccatggg caaaccggcg gtcactcact atcgcatcat ggaacacttc
     1561 cgtgtgcaca cgcgtctgcg gttgcgtctg gaaaccggac gtacgcacca gatccgcgtg
     1621 catatggcgc atattaccca tccgctggtg ggcgatccgg tttatggtgg ccgtccgcgt
     1681 ccgccaaaag gtgcttcgga agcgtttatc tccacgctgc gtaagtttga ccgccaggcg
     1741 cttcatgcaa ctatgctgcg tctttatcac ccgatctccg gcatcgaaat ggaatggcat
     1801 gcgcctattc cagaagatat ggtggagttg attgaggtta tgcgcgccga tttcgaagag
     1861 cataaggatg aagtggactg gttatgagta agctgattgt cccgcagtgg ccgctgccaa
     1921 aaggtgttgc ggcctgtagc tctacccgta tcggcggcgt gagcttgcca ccttacgact
     1981 ctctcaacct tggcgctcat tgtggtgata acccggagca cgtagaggag aatcgcaagc
     2041 aactttttgc tgcgggaaat ttgccttcaa aaccggtctg gcttgagcag gtacacggca
     2101 aagatgtgct taagctcact ggcgaacctt atgcctcaaa acgggcggat gcctcttata
     2161 gcaatacgcc cggcacggtt tgcgcagtga tgactgccga ctgcctccct gtgctgtttt
     2221 gcaatcgagc gggaacggaa gtcgccgccg ttcatgctgg ctggcgtgga ctgtgcgcag
     2281 gcgtgctgga agagacggtt tcctgttttg ctgataaacc tgaaaacatt ctcgcctggt
     2341 tagggccggc aattggtcca cgcgcgttcg aagtgggggc ggaggttcgc gaggcgttta
     2401 tggcagtaga cgctaaagca agtgcagctt tcattcagca tggtgataag tatctggcgg
     2461 atatttatca gcttgcccgg cagcgtctgg cgaacgtggg tgttgagcaa attttcggcg
     2521 gcgaccgttg tacatatacg gaaaatgaga ctttcttctc ttatcgtcgc gacaagacca
     2581 ccggtcgtat ggcaagtttc atttggctga tataacctaa agaatcaaga cgattcggta
     2641 cgcgtgattt tcttttcaca ttaatctggt caataacctt gaataattga gggatgacct
     2701 catttaatct ccagtagcaa ctttgatccg ttatgggagg agttatgcgt ctggatcgtc
     2761 ttactaataa attccagctt gctcttgccg atgcccaatc acttgcactc gggcacgaca
     2821 accaattcat cgaaccactt catttaatga gcgccctgct gaatcaggaa gggggttcgg
     2881 ttagtccttt attaacatcc gctggcataa atgctggcca gttgcgcaca gatatcaatc
     2941 aggcattaaa tcgtttaccg caggttgaag gtactggtgg tgatgtccag ccatcacagg
     3001 atctggtgcg cgttcttaat ctttgcgaca agctggcgca aaaacgaggt gataacttta
     3061 tctcgtcaga actgttcgtt ctggcggcac ttgagtctcg cggcacgctg gccgacatcc
     3121 tgaaagcagc aggggcgacc accgccaaca ttactcaagc gattgaacaa atgcgtggag
     3181 gtgaaagcgt gaacgatcaa ggtgctgaag accaacgtca ggctttgaaa aaatatacca
     3241 tcgaccttac cgaacgagcc gaacagggca aactcgatcc ggtgattggt cgtgatgaag
     3301 aaattcgccg taccattcag gtgctgcaac gtcgtactaa aaataacccg gtactgattg
     3361 gtgaacccgg cgtcggtaaa actgccatcg ttgaaggtct ggcgcagcgt attatcaacg
     3421 gcgaagtgcc ggaaggattg aaaggccgcc gcgtactggc gctggatatg ggcgcgctgg
     3481 tggctggggc gaaatatcgc ggtgagtttg aagaacgttt aaaaggcgtg cttaacgatc
     3541 ttgccaaaca ggaaggcaac gtcatcctgt ttatcgacga attacatacc atggtcggcg
     3601 cgggtaaagc cgatggcgca atggacgccg gaaacatgct gaaaccggcg ctggcgcgtg
     3661 gtgaattgca ctgcgtaggt gccacgacgc ttgacgaata tcgccagtac atcgaaaaag
     3721 atgctgcgct ggaacgtcgt ttccagaaag tgtttgttgc cgagccttct gttgaagata
     3781 ccattgcgat tctgcgtggc ctgaaagaac gttacgaatt gcaccaccat gtgcaaatta
     3841 ctgacccggc aattgttgca gcagcgacgt tgtctcatcg ctacattgct gaccgtcagc
     3901 tgccggataa agccatcgac ctgatcgatg aagcagcatc cagcattcgt atgcagattg
     3961 actcaaaacc agaagaactc gaccgactcg atcgtcgtat catccagctc aaactggaac
     4021 aacaggcgtt aatgaaagag tctgatgaag ccagtaaaaa acgcctggat atgctcaacg
     4081 aagaactgag cgacaaagaa cgtcagtact ccgagttaga agaagagtgg aaagcagaaa
     4141 aggcatcgct ttctggtacg cagaccatta aagcggaact ggaacaggcg aaaatcgcta
     4201 ttgaacaggc tcgccgtgtg ggggacctgg cgcggatgtc tgaactgcaa tacggcaaaa
     4261 tcccggaact ggaaaagcaa ctggaagccg caacgcagct cgaaggcaaa actatgcgtc
     4321 tgttgcgtaa taaagtgacc gacgccgaaa ttgctgaagt gctggcgcgt tggacgggga
     4381 ttccggtttc tcgcatgatg gaaagcgagc gcgaaaaact gctgcgtatg gagcaagaac
     4441 tgcaccatcg cgtcattggt cagaacgaag cggttgatgc ggtatctaac gctattcgcc
     4501 gtagccgtgc ggggttggcg gatccaaatc gcccgattgg ttcattcctg ttcctcggcc
     4561 caacgggtgt ggggaaaact gagctttgta aggcgctggc gaactttatg tttgatagcg
     4621 acgaggcgat ggtccgtatc gatatgtccg agtttatgga gaaacactcg gtgtctcgtc
     4681 tggttggtgc gcctccggga tatgtcggtt atgaagaagg tggctacctg accgaagctg
     4741 tgcgtcgtcg tccgtattcc gtcatcctgc tggatgaagt ggaaaaagcg catccggatg
     4801 tcttcaacat tctgttgcag gtactggatg atggtcgtct gactgacggg caggggagaa
     4861 cggtcgactt ccgtaatacg gttgtcatta tgacctctaa cctcggttcc gatttgattc
     4921 aggaacgctt cggtgaactg gattatgcgc acatgaaaga gctggtgctc ggtgtggtaa
     4981 gccataactt ccgtccggaa ttcattaacc gtattgatga agtggtggtc ttccatccgc
     5041 tgggtgaaca gcacattgcc tcgattgcgc agattcagtt gaaacgtctg tacaaacgtc
     5101 tggaagaacg tggttatgaa atccacattt ctgacgaggc gctgaaactg ctgagcgaga
     5161 acggttacga tccagtctat ggtgcacgtc ctttgaaacg tgctatccag cagcagatcg
     5221 aaaacccgct ggcacagcaa atactgtctg gtgaattggt tccgggtaaa gtgattcgcc
     5281 tggaagttaa tgaagaccgg attgtcgctg tccagtaatg ataaaacgag cccttcgggg
     5341 ctcgtttttg tctataagtt agacggaaaa gactatattt aagatgtttt gcctgaaaaa
     5401 tgagcgaacg ataaagtttt tatatttttc gcttgtcagg ccggaataac tccctataat
     5461 gcgccaccac tgacacggaa caacggcaaa cacgccgccg ggtcagcggg gttctcctga
     5521 gaatctcaac agagaaaagc aaaaaaatgc ttgactctgt agcggggaag cgtattatgt
     5581 acaccccgcg cagctgagaa aaagcgaagc ggcactgctc tttaacaatt tatcagacaa
     5641 tctgtgtggg cactcgaaga tacggattct taacgtcgca agacgaaaaa tgaataccaa
     5701 gtctcaagag tgaacacgta attcattacg aagtttaatt ctttgagcat caa
//
LOCUS       DADMJB010000208         5670 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.211, whole genome shotgun sequence.
ACCESSION   DADMJB010000208 DADMJB010000000
VERSION     DADMJB010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5670)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5670)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5670
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.211"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            190..2600
                     /locus_tag="JN078_003796"
                     /pseudo
     CDS             190..2600
                     /locus_tag="JN078_003796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416104.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase subunit A"
     gene            2661..5084
                     /locus_tag="JN078_003797"
     CDS             2661..5084
                     /locus_tag="JN078_003797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416105.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase subunit A"
                     /protein_id="HAY9042828.1"
                     /translation="MKIHTTEALMKAEISRRSLMKTSALGSLALASSAFTLPFSQMVR
                     AAEAPVEEKAVWSSCTVNCGSRCLLRLHVKDDTVYWVESDTTGDDVYGNHQVRACLRG
                     RSIRRRMNHPDRLKYPMKRVGKCGEGKFERISWDEALDTISDNLRRILKDYGNEAVHV
                     LYGTGVDGGNITNSNVPYRLMNSCGGFLSRYGSYSTAQISAAMSYMFGANDGNSPDDI
                     ANTKLVVMFGNNPAETRMSGGGVTYYVEQARERSNARMIVIDPRYNDTAAGREDEWLP
                     IRPGTDGALACAIAWVLITENMVDQPFLDKYCVGYDEKTLPANAPRNTHYKAYILGEG
                     PDGIAKTPEWAAKITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTSRAIAM
                     LSVLTGNVGINGGNSGVREGSWDLGVEWFPMLENPVKTQISVFTWTDAIDHGTEMTAT
                     RDGVRGKEKLDVPIKFLWCYASNTLINQHGDINHTHEVLQDDSKCEMIVGIDHFMTAS
                     AKYCDILLPDLMPTEQEDLISHESAGNMGYVILAQPATSAKFERKPIYWMLSEVAKRL
                     GPDVYQTFTEGRSQHEWIKYLHAKTKERNPEMLDYEEMKTTGIFKKKCPEEHYVAFRA
                     FREDPQANPLKTPSGKIEIYSERLAKIADTWELKKDEIIHPLPAYTPGFDGWDDPLRK
                     TYPLQLTGFHYKARTHSSYGNIDVLQQACPQEVWINPIDAQARGIRHGDTVRVFNNNG
                     EMLIAAKVTPRILPGVTAIGQGAWLKADMFGDRVDHGGSINILTSHRPSPLAKGNPSH
                     SNLVQIEKV"
     gene            5095..>5670
                     /gene="dmsB"
                     /locus_tag="JN078_003798"
     CDS             5095..>5670
                     /gene="dmsB"
                     /locus_tag="JN078_003798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit B"
                     /protein_id="HAY9042829.1"
                     /translation="MTTQYGFFIDSSRCTGCKTCELGCKDFKDLGPEVSFRRIYEYAG
                     GDWQEDNGIWHQNVFAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGC
                     RYCHMACPYGAPQYNAEKGHMTKCDGCYSRVAEGKQPICIESCPLRALEFGPIEELRQ
                     KHGTLAAVAPLPRAHFTKPNIVIKPNANSRPT"
BASE COUNT         1536 a         1439 c         1419 g         1276 t
ORIGIN      
        1 actgaacgcc ggatatgaca catccggcga tttgaacata caacataatc ccaccttatt
       61 actcataccc ttctattgat gtggattaat aattcttaac ccaaaatggg tagacccccc
      121 tctattgtta gcgcgctaaa tattcaatac ataaacattt atataacgat aaagaacagg
      181 gagtgagtta tgtccaaaaa tgaccgaatg gtgggcatca gccgcagaac actcgttaaa
      241 tcaaccgcga taggttctct ggcgctggct gcaggcggtt tttctttacc gttcaccctg
      301 cgcagtgcag cggcaacggt acaacaggcc agcgaaaaag tgatctgggg tgcctgttcc
      361 gtcaactgtg gtagccgctg tgcacttcgt ctacatgtta aagataatga agtgacctgg
      421 gtggaaactg acaataccgg cagcgatgag tacggcaacc atcaggtacg cgcctgtttg
      481 cgcggtcgct ccatccgccg gcgtattaat catcccgatc gcttgaatta cccaatgaaa
      541 cgcgtgggta aacgcggtga aggcaaattc gaacggatta gctgggatga agccctggat
      601 actatcgcca gtagcctgaa aaaaaccgtc gaacaatatg gcaatgaggc tgtatatatt
      661 cagtactctt cggggattgt tggcggcaat atgacccgct cttcgccatc agcctcggcg
      721 gtcaaacgcc tgatgaactg ctacggcggt tcactcaatc agtatggctc ctacagcacc
      781 gcacaaattt cctgtgccat gccctacacc tacggcagta atgatggcaa cagcaccacg
      841 gatattgaaa acagcaagct ggtcgtgatg tttggtaaca acccggcaga aacccgcatg
      901 agcggcggtg gcatcactta tcttcttgaa aaagcgcgcg agaaatcgaa cgccaaaatg
      961 attgttatcg atccgcgata taccgatacg gctgctggtc gtgaagatga atggcttcct
     1021 attcgcccgg gcaccgatgc cgcgctggtt gcgggtattg cctgggtatt gattaacgaa
     1081 aatctcgttg atcaaccttt tctcgataaa tactgcgtcg gctatgacga aaaaacctta
     1141 cccgcagatg caccaaaaaa tggtcactat aaagcctata ttcttggtga aggtgatgat
     1201 aatacagcga aaacgccgca gtgggcttcg caaattaccg gtatcccggt ggaccgtatc
     1261 atcaaactgg cgcgtgaaat tggcacagca aaacccgctt atatctgcca gggctggggg
     1321 ccgcaacgcc aggcaaacgg cgaactgact gcacgcgcta ttgctatgtt gcctattttg
     1381 acgggcaatg tcggcatcag cggcggaaat agtggcgcgc gtgaatcgac ctataccatt
     1441 accatagaac gcctgccggt gctggataat ccggtcaaaa cgtcaatctc ctgcttcagc
     1501 tggacagatg ctatcgatca tggtccgcaa atgacggcaa tccgcgacgg cgtccgcggc
     1561 aaagataaac tggatgtgcc cattaagttc atctggaact acgcgggaaa taccctcgtt
     1621 aatcagcatt ctgacatcaa caaaacgcat gaaattctgc aggacgaatc gaaatgcgaa
     1681 atgattgtgg tcatcgaaaa ctttatgacc tcatcggcaa actgccagac ctgatgaccg
     1741 ttgagcagga agatattatt cctaacgact acgccggtaa catgggatat ctcattttcc
     1801 tccagcctgt caccagcgaa aaattcgaac gcaaaccgat ttactggatc ctgagtgaag
     1861 tcgcgaaacg tcttggacct gacgtctatc aaaagttcac agaaggtcgc acgcaggaac
     1921 aatggttaca acatctgtac gccaaaatgc ttgccaaaga tccggcgtta ccgtcttacg
     1981 acgaactgaa aaaaatgggt atctataagc gtaaagatcc caatggccat tttgtcgcct
     2041 acaaagcatt tcgtgacgac cccgaggcaa atccacttaa aacgccttcc ggtaagattg
     2101 aaatttattc cagcaggctg gcggaaattg cccgtacctg ggaactggaa aaagatgaag
     2161 tgataagccc attgccagtt tatgcctcaa cctttgaagg ctggaactcc cctgaacgta
     2221 gaaccttccc actgcaactg tttggtttcc attacaaatc ccgtactcac tcgacctacg
     2281 gcaatattga tctcctgaag gctgcctgcc gtcaggaggt gtggatcaac cctatagatg
     2341 cgcagaaacg tgggattgcc aacggcgata tggtgcgggt gtttaaccat cgtggcgaag
     2401 ttcggctacc agccaaagta acaccacgta ttctccctgg agttagcgct atgggccagg
     2461 gagcctggca cgaggccaat atgtctggcg ataaaatcga ccatggcggc tgtgtgaata
     2521 cgctaaccac tctgcgccct tcaccactgg cgaagggaaa cccgcagcac actaatctgg
     2581 tcgagatcga aaaaatataa cccacgacaa ccataaattc tggcatgaca ttttgtttga
     2641 aaagcaataa gtgagtaatg atgaaaatcc ataccacaga ggcgctcatg aaggctgaaa
     2701 tcagccgtag aagtctgatg aaaacctccg cacttggcag tcttgcgctg gcaagcagtg
     2761 ctttcactct gccattttcc caaatggtcc gggcggcaga ggctccggta gaagagaaag
     2821 cggtctggag ttcctgcacc gttaactgcg ggagccgctg tctgttacgt ttgcatgtga
     2881 aagatgacac cgtgtactgg gtggagtctg atacgacagg tgacgacgtc tacggtaatc
     2941 atcaggttcg agcgtgttta cgcgggcgct ctatccgccg acggatgaat catcctgata
     3001 ggttgaaata tcccatgaag cgcgtcggca agtgcggtga aggtaaattt gaacggataa
     3061 gttgggacga agccctggat accatcagtg ataatcttcg gcggatcctg aaagattacg
     3121 gcaatgaggc tgtacatgtc ctgtacggaa caggcgtaga tggcggaaac atcaccaact
     3181 caaacgtccc gtaccgtctg atgaactctt gcggtggttt tctcagtcgc tatggcagct
     3241 acagtaccgc acagatcagt gccgcaatga gttatatgtt cggtgccaat gatggcaaca
     3301 gcccggatga tatcgccaat acgaaactgg tcgttatgtt cggaaataac ccggcagaaa
     3361 cgcggatgag cggcggtggt gtcacttact acgtcgagca agcccgcgaa cgttcaaacg
     3421 cacgcatgat cgtcatcgat ccacgttata acgacactgc tgccgggcgt gaagatgaat
     3481 ggctgcctat tcgccctggc accgatggcg cactggcctg tgcgattgcc tgggtactga
     3541 ttactgaaaa catggtcgat cagccatttc tcgacaaata ttgtgttggt tacgatgaaa
     3601 aaacgctgcc cgccaacgca ccacgtaaca cgcattataa agcctatatt ctgggcgaag
     3661 ggcctgacgg catagctaaa acgccggaat gggcagcaaa aatcaccagc atcccggcag
     3721 aaaaaattat ccagttggcg cgagagatcg gttcagcaaa acctgcttat atttgtcagg
     3781 gttgggggcc acaacgacat tccaacggcg agcaaacgtc ccgcgctatt gccatgcttt
     3841 ccgttctcac cggtaacgtt ggcataaacg gcggcaactc aggtgtacgc gaaggtagct
     3901 gggatctggg ggtagaatgg ttcccgatgc ttgagaatcc tgttaaaacg cagatttccg
     3961 tctttacatg gacagatgcc atcgaccatg gtacggaaat gaccgcgacc cgtgatggtg
     4021 ttcgtggaaa agaaaaactg gatgtcccca tcaagttttt atggtgctac gccagtaaca
     4081 cattgatcaa tcaacatggc gacatcaatc acacccatga ggtgcttcag gatgacagca
     4141 agtgcgagat gattgttggc attgaccact tcatgacggc ctcggctaag tattgcgata
     4201 tcctgttgcc cgacctgatg ccaacagagc aagaagacct tatctctcat gaatctgcag
     4261 ggaatatggg ctatgtgatc ctcgcccaac ccgcaacctc agcaaaattt gaacgcaaac
     4321 ccatctactg gatgctgagt gaagtcgcca aacgcttagg accagacgtt tatcaaacct
     4381 ttactgaagg tcgcagtcag catgaatgga tcaaatatct ccatgcgaaa acgaaggaac
     4441 gtaaccctga gatgctcgac tacgaggaga tgaaaacgac cgggatcttt aagaaaaaat
     4501 gcccggaaga acactacgtc gctttccgcg cattccgtga agatccacag gcaaacccgt
     4561 tgaaaacacc ttcggggaaa atcgaaattt attctgaacg actggcgaag attgcagata
     4621 cctgggaatt gaaaaaagat gaaattattc atccccttcc tgcgtatacc ccaggttttg
     4681 atggctggga cgatcccctg cggaaaacct atccactgca gttaacgggc ttccactaca
     4741 aagcgcgtac ccactccagc tacggcaata ttgatgtgtt acagcaggcc tgcccacaag
     4801 aggtgtggat caaccccatt gatgctcagg cacgcggtat ccgtcatggc gataccgtgc
     4861 gggtatttaa caataatgga gaaatgctga ttgccgcaaa agtgactccg cgtattctgc
     4921 ctggcgttac cgccatcggg caaggtgcgt ggcttaaagc ggatatgttt ggtgaccggg
     4981 tcgatcacgg cggcagtatc aatattctga cctctcaccg cccttcaccg ctggcaaagg
     5041 gaaacccgtc gcacagcaat cttgtccaga tcgaaaaggt ttaaggagta gcccatgacc
     5101 acacaatatg gattttttat cgattccagc cgctgtactg gctgtaaaac ctgcgaactg
     5161 gggtgcaaag attttaaaga tcttggcccg gaagtcagtt tccgccgtat ttatgaatat
     5221 gctggcggcg actggcagga agataatggc atctggcacc agaacgtgtt cgcttattat
     5281 ctctccatct cctgtaacca ttgcgatgac cccgcatgta caaaagtctg ccccagcggc
     5341 gcaatgcata agcgtgaaga tggctttgtg gtggttgatg aagatgtttg tatcggctgc
     5401 cgctactgcc acatggcttg tccgtacggc gcaccacagt acaatgctga aaaagggcac
     5461 atgacgaagt gcgatggttg ttattcgcgc gtcgccgagg ggaaacaacc catatgcatc
     5521 gaatcctgcc cgctgcgtgc acttgagttc ggtccaattg aagagctgcg ccagaagcac
     5581 ggcactctgg ctgccgtcgc gccactgccg cgcgcgcatt tcacaaaacc caatatcgtt
     5641 atcaaaccta acgccaacag ccgcccgacc
//
LOCUS       DADMJB010000209         5595 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.212, whole genome shotgun sequence.
ACCESSION   DADMJB010000209 DADMJB010000000
VERSION     DADMJB010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5595)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5595)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5595
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.212"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..401)
                     /locus_tag="JN078_003799"
     CDS             complement(<1..401)
                     /locus_tag="JN078_003799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000511771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HAY9042830.1"
                     /translation="MGILEQEMKRLAQQAGGSHKTVHDRIKLVQRFCERLVLAQNVQI
                     RRVEQLKARYIEGYVRERLAQGITKRSLQNEMAAVRCILKQAGRDRLAQSERLNNRSL
                     GLSGASRNGTKRAITPEHYRHVLETARAKDPG"
     gene            complement(1266..1583)
                     /locus_tag="JN078_003800"
     CDS             complement(1266..1583)
                     /locus_tag="JN078_003800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016161430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HAY9042831.1"
                     /translation="MDRGEIWLVSLDPTTGHEQSGKRPVLIVSKASFNTFTRLPVVVP
                     VTSGGNFAREAGFTVSLDGAGTKTTGVIRCDQPRTIDMGARSGKRLERIPDAVVNEVL
                     ARL"
     gene            complement(1584..1841)
                     /locus_tag="JN078_003801"
     CDS             complement(1584..1841)
                     /locus_tag="JN078_003801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000288814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HAY9042832.1"
                     /translation="MYTTRLKKVGGSVMLAVPPAVLKTLGLSTDSEVGMTIDNGCLII
                     EPQKRPRYSLEELLAQCDPHAEISEEGREWIDAPAVGKEIL"
     gene            complement(2190..2396)
                     /locus_tag="JN078_003802"
     CDS             complement(2190..2396)
                     /locus_tag="JN078_003802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003842122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HAY9042833.1"
                     /translation="MMLQDWHPADIIAGLKKRGTSLSALSRQAGLASSTLANALTRRW
                     PKGERLIAEALGIKPEQIWPSRYR"
     gene            complement(2393..2854)
                     /locus_tag="JN078_003803"
     CDS             complement(2393..2854)
                     /locus_tag="JN078_003803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012822469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042834.1"
                     /translation="MATIPTQTHPLLAVPFSAATDFTVLADHCENVAETLIESEDPVL
                     RLALCGRLAACLTLLQPTLNDPIPSHLTDSLTVDALPADMPRFVPDAELLCDYSLTLA
                     QLLIGQGMQPKVEQTITGLLCELVWYFAAEMKAPRWLRTADGVKFIDEVAA"
     gene            complement(3225..4829)
                     /locus_tag="JN078_003804"
     CDS             complement(3225..4829)
                     /locus_tag="JN078_003804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016239422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042835.1"
                     /translation="MITKELVDESNFISQLVDIGRFDESYQQSVAFLNKLERITIRND
                     NYFIVLANIAGALVDIGQMQNNKNASELGCNLMEDNKEAFISVLGECLYYYNYGNALS
                     NLVSITNPNDHTFKSIEELVSLENIYWRSFKLSAEEQEEFQAELSVNLANSLRSQFRL
                     SESLRYYDLTNLKGLDIPQAWVNRSMSLMVLNLISSSFSIKLLKEVRAGYIKASVSKN
                     IPPQWESFYLERIAQTNEKIAEYAVDDETDEHDEALTQQEFEVLSPYRQFCLRNHLTL
                     SEHGLYCPCVGSATDDLVIASRGGVTGDFIIPMEMVLNRLKSEFSLARHLYFDYLHPQ
                     NTDYIKYESHFLELYNDEVLGIEIEKIRTAFRLCFGILDKIAVAICELYNLYPTTKKG
                     TPQKNIYFQNFWQLDVDNRRQLFEKVKSPGLLALYSIATDLNKDKGGELAFYKEWRNG
                     LEHKFLVVHKSDKPEDIYESYQLIEDILFIKESDFIHHFEHLLQITRSAIFSFAFMVR
                     QEGMKEKKEGIHYMTRELHAINYSAD"
     gene            complement(4842..5207)
                     /locus_tag="JN078_003805"
     CDS             complement(4842..5207)
                     /locus_tag="JN078_003805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042836.1"
                     /translation="MVSDKRADIIVSLPQIKIPIEIKRDYHRDVWTALNGQLDKLYTK
                     NPDAAGHGIYLVFWFGSARPNSLPHLAKNTSQPENASAMENMLNETVPVDKRDRLSAI
                     VIDVSCEGIPPVEAPKSSV"
     gene            complement(5235..5444)
                     /locus_tag="JN078_003806"
     CDS             complement(5235..5444)
                     /locus_tag="JN078_003806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001044500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042837.1"
                     /translation="MNKTPANIMDLYSLLLDHIRDISNRIANENTDIYKQFWNEDSYG
                     RTLTPKPEESCRNIFLDLLRVRLNP"
BASE COUNT         1447 a         1347 c         1306 g         1495 t
ORIGIN      
        1 cccggatctt ttgcgcgggc ggtttccagc acatggcggt aatgctccgg cgtgatggcc
       61 cgcttcgtac cgttacggga tgcgccagac aggcccagcg agcggttatt cagtcgctca
      121 ctctgcgcca gcctgtcacg cccggcctgt ttcagaatgc agcgcaccgc cgccatctca
      181 ttttgcaggg aacgcttcgt gataccctgc gccagtcgtt cacgaacata tccctcaata
      241 taccgcgcct taagctgctc cacccggcgg atctgcacat tctgtgccag aaccagacgc
      301 tcacaaaacc gctgcaccag cttaatacgg tcgtgaacgg tcttatggct gccgcccgcc
      361 tgttgtgcca atcgcttcat ttcctgctcc agaatcccca tacattcccc ctttcatgat
      421 tgccgcaaac tcatccccaa aaactcaaca ctgatacagc gttccccggc gcacaggccg
      481 atagcccctg agttttgtcg gggctgcgaa cgatacctga gcgccggggc ggcagccgtt
      541 gaggtgtggt ggggcttcgg ttgtgctctc agagcagccg cccgcttgcg cgggtcatcc
      601 cccggatcgt ccagatccgc ctcggtatcg gttcatattc tccttatggg taaatggcct
      661 aaaaaggcgg tgtcagaatc cagccatgag ctggcgcagt tgagttttct ggtgcaggtc
      721 gaaagggctt gcgtgcgtca ctttcccgct ttgcgcggtt aaagtgacgc acggatctgg
      781 tgcagcatct gagatttatc gtctggtgca gttttacggt cacgcggcag caaagcctga
      841 cggcaatgca ggccgcagcc cgtaaggtaa aaggcgctga gggtgtcagc agatgcaggt
      901 tagccgggag aattccggcg cggtgcagat tcagaccagc aggctggcga agtaaaagga
      961 tgtatcgtat taaaactctg gcctccgtcg cgatgttctg cgacccggtg tttgcagagg
     1021 tctgcaccgg taaacggatc gaccgtcctg ataacaggcg cttctttcag gttgtgaagc
     1081 gttgggcgct gtctacgaca gcatagagca agggggagac tacgcctgtg ccgctggcgc
     1141 ggaaaggaga aactgttttt acctgcaaaa ggatttttta atcacttgtt gttataaaaa
     1201 atgagggcgc tgtatgtgac agcgccctcg ttcaggttac ataaaaaata tcagctcaga
     1261 atagcttaca gtcgagccag cacctcattc acgacagcat cgggtatacg ttccagccgc
     1321 ttaccgctcc gagctcccat atcaatggtt ctgggctggt cgcagcgaat aacgcccgtt
     1381 gtttttgttc ccgccccgtc cagtgaaacg gtaaaaccgg cttcgcgggc aaagtttccg
     1441 ccgctggtga cagggacaac aacaggcaac cgggtgaacg tgttaaacga tgccttcgat
     1501 acgatgagta ccggacgttt tccactttgt tcatggccag tggtgggatc cagtgaaacg
     1561 agccagattt ctcctctgtc catctacagg atctccttgc ccaccgcagg cgcatcaatc
     1621 cattcccgac cctcttcgct tatttcagcg tgcggatcgc actgcgccaa cagttcttcg
     1681 agcgaatagc ggggacgttt ttgaggttca ataatcaggc agccattatc aatggtcatg
     1741 cccacttcgc tgtccgtcga cagccctagc gttttcagca ctgcgggggg aaccgccagc
     1801 atgacggatc cgccaacctt tttcaggcga gtggtataca tagagcacct ccggatatta
     1861 tattttaata taacatccat gatagacgat gcacaactat tcatcagatt cattgtggtt
     1921 tccttagtgt aataaagcgt gaagaaagcc ttaatccatc ggaagacaga tccggcagtt
     1981 ttcaaaggcg acattgccgg taaaagggca accgtcctga tacatcaggc gcttctttca
     2041 ggtcatgaag catttcgtac aggcgggagc ttagtgcgta acaaagaagg ccgataatag
     2101 gaaactgctt ttgcagttca aaggattatg acggttcgga taaacaaaat gcggcgcagc
     2161 ttccgtatcc gggctgcgcc gcaggaacat cagcggtagc gcgaaggcca gatttgctca
     2221 ggcttgatgc ctaacgcttc ggcaattaac ctttcgcctt tgggccagcg gcgggtaagc
     2281 gcattagcca gcgtggagga cgccagacct gcctgacgcg aaagcgctga cagcgaagtg
     2341 cctcgttttt tcagcccggc gataatgtcg gcaggatgcc agtcctgcag catcatgcag
     2401 ccacctcgtc gataaacttc acgccatcgg cggtgcggag ccagcgcggg gctttcattt
     2461 cggcggcaaa ataccagacc agttcacata ataagcctgt tatcgtctgc tccacttttg
     2521 gctgcatccc ctgcccgata agaagttgcg ccagcgtcag tgagtaatca caaagtaatt
     2581 ctgcgtcggg gacaaatcgg ggcatatcgg caggtagagc atcaacggtc aggctgtcag
     2641 tcagatgaga cgggatgggg tcgttcagcg tgggttgcag caaagtgaga caggcggcaa
     2701 gtcgcccgca aagcgccagc cgcagcaccg gatcttcgct ttcgatcagg gtttcggcga
     2761 cgttttcgca gtggtctgcc agtacggtaa aatctgtggc agcactgaag ggaacagcaa
     2821 gtaacgggtg tgtctgagtg gggatcgtag ccataaaggc agcctccagt atgtggtttg
     2881 aaaaccacca ccagaggttc caatctcatg ggtggtggac tgaacgaggt tggaactacc
     2941 ggccatactg gaaccggcgc accttacggt gcccccgccc agcccaccat aattttggtg
     3001 tagctaagcg cgcgacataa aaaaagacgc agacgcgtca cgtgtcgcca gtatggttat
     3061 atttcggggt tccaatcccg gcacctgatt ttgcaggtgc gggtaaaaga taccgctttc
     3121 ggttgaaaac ggcaagggga agtcgtggaa tagagatcgc agattgttat aaatatacac
     3181 aatagttaat gttaacaaag acggcacata tattaacttt actctcaatc tgctgaatag
     3241 tttatcgcat gtaattctcg ggtcatatag tggataccct ccttcttttc tttcatcccc
     3301 tcttgcctca ccataaaagc aaacgaaaaa attgctgaac gagttatctg aagtaaatgc
     3361 tcaaaatggt gaataaaatc actttctttg ataaaaagaa tatcttctat tagttgataa
     3421 gattcgtaaa tgtcctcagg tttatcactt ttatgtacaa ctaaaaactt atgctctaaa
     3481 ccattgcgcc attctttata gaaagccaac tccccaccct tatctttatt caggtcggta
     3541 gcaatactgt acagcgccag aagccctggt gattttacct tttcaaataa ttgtcttctg
     3601 ttatcaacat ctaactgcca gaaattctga aaatagatat tcttctgagg tgtacctttt
     3661 tttgttgttg ggtaaagatt ataaagttca catatggcta ccgcaatttt atcaagaata
     3721 ccaaagcaaa gacgaaatgc cgtcctgatt ttttcaattt ctattcctaa aacttcgtca
     3781 ttatacaatt ccagaaaatg gctttcgtac ttaatgtaat ccgtattttg tggatgaaga
     3841 taatcaaaat aaagatggcg tgcgagtgaa aactccgatt taaggcgatt taataccatc
     3901 tccatgggaa tgataaaatc acctgttaca ccgcctcgcg aagcaatcac aagatcatct
     3961 gtagcactcc ctacacatgg gcaatacagg ccatgttctg ataaagtcag atgatttcta
     4021 agacaaaact gtcgatatgg gcttaacact tcgaactctt gttgtgtaag tgcttcatcg
     4081 tgttcgtcag tttcatcatc aacagcatat tctgcgattt tctcgttagt ctgcgctatg
     4141 cgttctaaat agaacgattc ccattgtggt gggatatttt ttgatacaga cgctttaata
     4201 tatcctgctc tcacttcttt tagtaacttg attgaaaatg aagatgaaat aagattgagg
     4261 accataagtg acatcgaacg gttgacccaa gcctgtggta tatctaatcc cttaagattg
     4321 gtaagatcat aatatctcaa tgactcactg agccgaaatt gacttcttaa tgaattagcc
     4381 aaattaacag atagttcagc ctgaaattcc tcctgctcct cagcagatag cttaaaagaa
     4441 cgccagtaga tattttctaa ggaaaccaat tcttctatcg atttgaatgt atggtcattg
     4501 gggttagtaa tgctcaccag attagatagc gcattaccat agttataata gtaaaggcac
     4561 tctcctaaca ctgatataaa tgcttctttg ttatcttcca tcaggttgca accaagctct
     4621 gacgcatttt tattattttg catctgcccg atgtcaacaa gagcacccgc aatgttcgcc
     4681 aatactataa agtagttatc gttcctgatt gttattcttt ccagtttgtt caggaacgca
     4741 actgactgtt gataagattc gtcaaatctt ccaatatcaa ccagttggct aatgaaatta
     4801 ctttcatcga caagttcttt tgttatcaaa ataaattttc cttatacaga ggatttcggt
     4861 gcttcaacag gaggtatgcc ctcacaggag acatctataa ctatcgctga taagcggtct
     4921 cttttatcaa ccggcacagt ttcattaagc atattttcca ttgcactggc gttttcaggt
     4981 tgagatgtat ttttcgccaa atgaggcagg gaattcggtc gagcagaacc aaaccaaaaa
     5041 accagataga taccgtgacc agcagcatcg gggtttttag tataaagctt gtccaattgc
     5101 ccattaagtg cagtccagac atcacgatga taatcacgct ttatctcgat aggtattttt
     5161 atctgcggta gtgaaacaat gatatctgcc cttttatcag aaaccatgtg tccttctggt
     5221 tcacagctta ttttttatgg attaagccgg acacggagta aatccagaaa aatattacgg
     5281 caactctctt caggtttagg cgttagggta cggccatagc tgtcttcatt ccagaattgc
     5341 ttataaatat cggtattttc attggcaatt cggttagaaa tatcccgtat atgatcaagc
     5401 aataatgagt aaagatccat tatgttggca ggcgttttat tcatcaatgt acttacagtc
     5461 tgcttccagt cggcatgatg gaactgtgat tctctataac gaattttctg attgctttgg
     5521 gcatgtgaga gatgatcccg ataactttca cattcaggca gcagtaataa gcgctcaagt
     5581 acttcactag catcg
//
LOCUS       DADMJB010000210         5519 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.213, whole genome shotgun sequence.
ACCESSION   DADMJB010000210 DADMJB010000000
VERSION     DADMJB010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5519
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.213"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(336..599)
                     /locus_tag="JN078_003807"
     CDS             complement(336..599)
                     /locus_tag="JN078_003807"
                     /inference="COORDINATES: protein motif:HMM:NF033564.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISAs1 family transposase"
                     /protein_id="HAY9042838.1"
                     /translation="MDTHYYVSSLEIAPEQAAKAVRQHWHIENQQHWVLDVAYREDAS
                     RLGDREAAGFFALFRRILRPSNRMSHLGKLWFRTHYSPNKKRL"
     gene            865..1158
                     /locus_tag="JN078_003808"
     CDS             865..1158
                     /locus_tag="JN078_003808"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042839.1"
                     /translation="MIGILKESPKDPDSLKVISITTPARGFSKYGFGSTEHGWFTTIT
                     YNAKNSYGGYVGAKSITFVYLNGDYKVAVPMSNGERVMLDKVSFSCKDNCQTK"
     gene            complement(1186..1341)
                     /locus_tag="JN078_003809"
     CDS             complement(1186..1341)
                     /locus_tag="JN078_003809"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042840.1"
                     /translation="MNSKQKCSHSNLEKEYYLGSATGDYKCLDCGEVVFGKDWPEKER
                     SKNDNEE"
     gene            complement(1580..1741)
                     /locus_tag="JN078_003810"
     CDS             complement(1580..1741)
                     /locus_tag="JN078_003810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001333247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="HAY9042841.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHDKTPLAAATGNRFVREMC
                     SEFLKWRPD"
     gene            complement(1766..2026)
                     /locus_tag="JN078_003811"
     CDS             complement(1766..2026)
                     /locus_tag="JN078_003811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042842.1"
                     /translation="MALKSGKAGKRMRRCRFSIGSAPLTSITKSDAQISGGETRQDYK
                     DPRRFPLVAPSCALLFLPFGLPVSFRCYGRVCLIPRLTLSSG"
     gene            3523..3747
                     /locus_tag="JN078_003812"
     CDS             3523..3747
                     /locus_tag="JN078_003812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000879771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraY domain-containing protein"
                     /protein_id="HAY9042843.1"
                     /translation="MLAIRLSDEIESRLDSLAKQTGRTKTFYAREAILAHLEDLEDYY
                     LSAETAARVRRGDEAVHSSEDVRKSLGLDD"
     gene            3731..3997
                     /locus_tag="JN078_003813"
     CDS             3731..3997
                     /locus_tag="JN078_003813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000262326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HAY9042844.1"
                     /translation="MVWTINYSDRALKSLRKMDKQNARRIVDFMDLRIAVAADPRQSG
                     KPLKGELGEFWRYRVGDYRILCEIRDDELVILAATIGHRREVYD"
     gene            complement(4044..4313)
                     /locus_tag="JN078_003814"
     CDS             complement(4044..4313)
                     /locus_tag="JN078_003814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017411319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042845.1"
                     /translation="METITHPTLVQLVAAGAVRVVIAVGQPGGWTLLVRYGLAERALA
                     AQRSKQLRVFRKLDTLVLYLQQIGVCRFEVDATGFMGAPRQIRSS"
     gene            complement(4501..4599)
                     /locus_tag="JN078_003815"
     CDS             complement(4501..4599)
                     /locus_tag="JN078_003815"
                     /inference="COORDINATES: protein motif:HMM:NF015750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042846.1"
                     /translation="MATIIVHCPRCQSDCVCRHGKGAVSVPCWRVF"
     gene            complement(4641..>5519)
                     /locus_tag="JN078_003816"
     CDS             complement(4641..>5519)
                     /locus_tag="JN078_003816"
                     /inference="COORDINATES: protein motif:HMM:NF013884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HAY9042847.1"
                     /translation="IISGFIMCYTTHNKNLTIISFLTLRVQRIIPLYWVFTTLALTVF
                     VISPSLVNSSGGETSIIDSYFLIPSSAKYLVNNGWTLSYEFYYYLIFSLFLVAFSSTK
                     LRYACIIATLLILSSFGLIFQPEDIVVDFLLSSWLYEFAIGVILFVAYDRGLVKANFG
                     YISVTLALAFLLYKNFNMEYLSGAPRVISIGVPMGLLFYGFLSFEGYFKRKKHFISNL
                     FERIGDSSYSLYLSHPFVLSPMAIIASKLGVTNSFLFGVILIGSSVFIGYATYVIIEK
                     RIIYFTKIKLVMPSVG"
BASE COUNT         1542 a         1256 c         1215 g         1506 t
ORIGIN      
        1 aaaaaaaaga tcgacccccg acccgcctat atgaaaccaa cttaaagttt ctgtattgta
       61 aatatttcct ttatgagcag tatgagccat aacgacaaga agagcagcaa taccccgcaa
      121 aaactgtata gaatataaca tcgaccacct aattccttac attatagttc atataaccta
      181 accatcttaa gcaagtgtta gaaatgggta cttaatggac accaaaaaaa tttaagcttt
      241 ccaataagtt agctagctaa aggccatgat tggcccaata atagtattct accaataaac
      301 caccagttaa tacaccgcca acggcacccg ctgttttata aacgcttctt gtttggcgag
      361 taatgagttc tgaaccagag cttacccaga tgcgacatcc tatttgaggg gcgcaggata
      421 cggcgaaaca gggcaaaaaa ccctgcagct tctctatctc cgagccgact ggcatcttcc
      481 cgatacgcca catccagcac ccaatgttgc tgattttcaa tgtgccaatg ctggcgaacc
      541 gctttggctg cctgttccgg cgctatctcc agcgagctga cgtaataatg ggtatccaag
      601 cttagagcct atcccaatag gctcttaaag tcggcaacgt ctatttattt tcacagcgca
      661 taacggatgt tatggtaaat ctatctataa atatctatta tagtggattt cctatagttg
      721 ttttggaaaa tgacaaggat atatatgaaa ataattaagt gggcttcact gtctggtgtt
      781 ctgttaatat ctgcttgtgg tgtttcttag aacgaagtaa atagtgctaa ttatggttta
      841 aaaccaatag ataatgatgc gaaagtgatt ggtatactta aagagagtcc aaaagatcct
      901 gattctctaa aagttatatc aataaccacc cccgccagag gtttttctaa gtatggcttt
      961 ggctctacag agcatggctg gttcactact atcacatata atgcaaaaaa ctcttatggc
     1021 ggttatgttg gtgctaagtc cattactttc gtttacttaa acggagatta taaagtggca
     1081 gtgccaatgt ctaatggtga gagggttatg ttagataaag tgtcattttc atgtaaagac
     1141 aattgccaaa ctaaatgata aaaaaggtcg caatagcggc tttttttatt cttcgttatc
     1201 atttttactt ctttcttttt ctggccagtc cttcccaaaa acaacctccc cgcaatccaa
     1261 acatttataa tctcctgtgg cgctacccaa gtagtattct ttttctagat ttgaatgaga
     1321 acatttttgt ttgctgttca ctacagtcac ctttggatat tcatttattc gtgaatgatt
     1381 tttatctata ccgacattgt taaatgatgg aaagatcttc ttgagatcct ttttttctac
     1441 gcgtaatctt catgactgta aacgaaaaaa ccaccctggc aggtggtttt tcgaaggtta
     1501 gttaatcctg gcagattctc taaccgtggt aacagtcttg tgcgagacat gtcaccaaat
     1561 ctgtccttcc agtgtagcct cagtcaggcc gccacttcaa gaactctgaa cacatctctc
     1621 gcacaaacct gttaccagtg gctgctgcca gtggcgtttt gtcgtgtctt tccgggttgg
     1681 actcaagacg atagttaccg gataaggcgc agcagtcgga ctgaacgggg ggttcgtgca
     1741 tacagtccag cttggagcga actgcctacc cggaactgag tgtcaggcgt ggaatgagac
     1801 aaacgcggcc ataacagcgg aatgacaccg gtaaaccgaa aggcaggaac aggagagcgc
     1861 acgagggagc taccaggggg aaacgcctgg gatctttata gtcctgtcgg gtttcgccgc
     1921 cactgatttg agcgtcagat tttgtgatgc ttgtcagggg ggcggagcct atggaaaaac
     1981 ggcagcgccg catccttttt ccggccttcc ctgacttgag tgccatctct ttatcttgtc
     2041 attcgtgagc aggtaacgcc cgccgcagcc tcacggcagg agcgtagcga ccgagtgagc
     2101 gaggaggcgt catatcaccg taactcccat tttctccctt acgccctgta gctgcatttt
     2161 cccctgtcac atgaagcact ttcattaggt gctactccgc cgtaacatat tcagccactg
     2221 tacactccgc tagcgctacg tgactggttc agtgctgcgc tccgaaaccc gctaacaacc
     2281 tctccgctac tagatatcac cccatgccat ttgaatatga tgaacaactg gattcgactg
     2341 atacgcagct tcccggcgaa tatgaccttt ttgatttaat ggcgcaggtt actgaagaga
     2401 acctgcacgc cccggtggat tttgggccgc ctgtcggccg ggaagcgtta tagctttttc
     2461 gcttacccgc gtacgtgtaa tacgccggta ttacatctta tttctttatt ttcatgtgat
     2521 tacaggtggt tgtaatacgt tgcgtattac ataaataaac gggaacttca gtttttacct
     2581 tttaattcat gcaattgcga tgaaaatcgc ggttgcgtat ggtgtatggc catttaaggg
     2641 ataaagaatc atctccttac cgggctgagc tttgcctatt ctgaggagat ctgtgaaaaa
     2701 aagcgtccat aactagctcg ttcatacttg tatgaacagc ttattcctcc tgactactaa
     2761 taaactacag cgtcactact gatttactac aaatcggagg aggatgacta cttatctact
     2821 actgatttac tactgaatta ctactgaatt acgtcataac agttctctga accattcgta
     2881 catccgaccc ccttctcttc atgcttgatg ctcttgccaa cgcttcacgg tcacgcaata
     2941 aattgcgtcc ccgttcaccg ttttcggatg agaagaacgt cgaaaacagg acttccactg
     3001 gctgcacggc gtgaaattct gcgctatgca cttgcgcgca tactcatgca tgccgtaaaa
     3061 acagagcctg cgtgtttctg gcgggttttc gggtggtttg ttgccttgtt ttaccggttt
     3121 cccgtcagaa acgctctcag agcctctcag gcggtgcacg caacagatgt tatgttcaat
     3181 cagactgatc tgcgggtaca aaaaaagccc cgggggcttt taactactga cttatttttt
     3241 tgaggatttg ctgggtttca atttgtcagt attccccggc gtttttttat tgtcacgctg
     3301 gcgtttatca ggttcccctg ttgaatcggc aattcgtttc ggacccggct taagacctat
     3361 aatcgttatc ctttcaatag ttaagaggaa agccctcaag ctggatatat tgacagcgtt
     3421 acggattatc aagaggggcc agcaagatta ttttttgttc ttttaggttg attgcgatac
     3481 tattgctata catgtatatc aaatggtgtt caggaggttt atatgcttgc tatccggtta
     3541 tctgatgaga ttgagtcccg tctggactcg ctggcgaagc aaaccggcag aacaaagacg
     3601 ttctatgcgc gggaagcaat actggcgcat ctggaagacc tggaagatta ttatctttca
     3661 gcagaaactg ccgcacgcgt tcgccgtggt gatgaagccg tgcattcgtc tgaagacgtg
     3721 aggaagtcac ttggtctgga cgattaacta ttccgaccgg gcgctcaaat cgttacgcaa
     3781 gatggacaaa cagaacgcac gacggattgt ggattttatg gatttacgca ttgcagttgc
     3841 tgccgatcct cgccagtcag ggaagccgct caaaggtgag ctgggcgagt tctggcgcta
     3901 tcgggtggga gattatcgca ttctgtgtga gatccgggat gacgagctgg ttatccttgc
     3961 cgccaccatt ggccatcgcc gcgaagttta cgactgaagc ccgctatgcg ggcttttttt
     4021 gatgctgata acgcctttta tgttcaagag ctcctgatct gtctcggggc acccatgaag
     4081 cccgtggcat ccacctcgaa ccggcaaacc ccgatctgct gcaggtagag aaccagggta
     4141 tcgagcttgc gaaaaactct gagctgcttg ctgcgctggg cggccagggc acgttcggct
     4201 agaccgtagc gcaccagcag cgtccagccg ccaggttggc caactgcgat cacgacacga
     4261 acagcaccgg ccgccaccag ttgtaccagg gtgggatggg taatggtttc catgggggag
     4321 attccgagac aagggatagt gcggcgcagg atgggagata acgcctagca aaacaagtca
     4381 tcttgcagga tgaccagcag caaaaagggc gtccgattta acgtaacgcc cccttatgcg
     4441 cagtcatcca ggcgggttat gactggggtg ggtactgagc aacgtagctg gttgtcagct
     4501 tcaaaagact cgccaacacg gcacggaaac agcacccttt ccgtggcggc agacgcagtc
     4561 tgattggcaa cgtgggcaat gaacgatgat agtggccata aggaatactg agtcttaaaa
     4621 gccaccatgg ctcacgttca tcaacctact gaaggcatca ccaatttaat tttggtgaaa
     4681 taaattattc ttttctcgat aattacgtaa gttgcataac caataaatac ggacgaccca
     4741 attaatataa ccccaaaaag aaatgaattt gtcaccccta acttactagc aataattgcc
     4801 atcggactta aaacgaaagg atgggaaagg tataaggagt aagagctatc tccaatccgt
     4861 tcaaataaat ttgagataaa atgttttttt cgtttaaaat acccctcaaa tgataagaaa
     4921 ccataaaaca gcaaccccat tggaacacca atagatatca ctcttggagc acctgataaa
     4981 tactccatgt taaagttttt atatagcaaa aaagccaatg ccaatgtaac tgagatataa
     5041 ccaaaattag ctttcaccaa ccccctgtca taagcaacaa ataatataac accaatcgca
     5101 aactcataca gccaactgct taacaaaaaa tccaccacta tatcttctgg ctgaaaaatc
     5161 aatccaaaag aggataaaat taagagagta gcaatgatac atgcatatct tagtttggtt
     5221 gacgagaaag caaccaaaaa taacgaaaag attagatagt aataaaattc atagcttaat
     5281 gtccatccgt tatttaccaa gtatttggca ctagatggta ttaaaaaata cgaatctatg
     5341 atgctagttt ctccaccaga tgagttaaca aggctgggag atataacgaa cacagtcaga
     5401 gctagagtcg taaataccca gtaaagagga atgattctct gaacacgcaa cgtcaaaaaa
     5461 cttatgattg ttaaattttt attatgtgtt gtgtagcaca ttataaaacc tgaaataat
//
LOCUS       DADMJB010000211         5439 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.214, whole genome shotgun sequence.
ACCESSION   DADMJB010000211 DADMJB010000000
VERSION     DADMJB010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5439)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5439)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5439
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.214"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..914
                     /locus_tag="JN078_003817"
     CDS             <1..914
                     /locus_tag="JN078_003817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418120.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HAY9042848.1"
                     /translation="PLSLRIGITSGIGLFIALMGLKNTGVIVANKDTLVMIGDLSSHG
                     VLLGILGFFIITVLSSRHFHAAVLVSIVVTSCCGLFFGDVHFSGVYSIPPDISGVIGE
                     VDLSGALTLELAGIIFSFMLINLFDSSGTLIGVTDKAGLIDGNGKFPNMNKALYVDSV
                     SSVAGAFIGTSSVTAYIESTSGVAVGGRTGLTAVVVGVMFLLVMFFSPLVAMVPPYAT
                     AGALIFVGVLMTSSLARVNWDDFTESVPAFITTVMMPFTFSITEGIALGFMSYCIMKV
                     CTGRWRDLNLCVVVVAALFALKIILVD"
     gene            967..1419
                     /locus_tag="JN078_003818"
     CDS             967..1419
                     /locus_tag="JN078_003818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418119.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1198 domain-containing protein"
                     /protein_id="HAY9042849.1"
                     /translation="MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVES
                     MVDQMGKSAGDEFLRYLHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKAR
                     LAAPITDAQVRLALGFLRETEPEMQDINAFQMRYNAFFQPAEGVHWLH"
     gene            1630..2820
                     /gene="nepI"
                     /locus_tag="JN078_003819"
     CDS             1630..2820
                     /gene="nepI"
                     /locus_tag="JN078_003819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418118.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine ribonucleoside efflux pump NepI"
                     /protein_id="HAY9042850.1"
                     /translation="MSEFIAENRGADAITRPNWSAVFSVAFCVACLIIVEFLPVSLLT
                     PMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRCYVVILFAVLLTLSCLLV
                     SFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIA
                     APLGSFLGELIGWRNVFNAAAVMGVLCIFWVIKSLPSLPGEPSHQKQNTFRLLQRPGV
                     MAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFIGTSLSSFIL
                     KRSVKLALAGAPLILAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSL
                     ADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALLVTAKVK
                     MKKS"
     gene            complement(2861..3154)
                     /locus_tag="JN078_003820"
     CDS             complement(2861..3154)
                     /locus_tag="JN078_003820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042851.1"
                     /translation="MKPTTLLLIFTFFAMPGIVYAESPFSSLQSAKEKTTVLQDLRKI
                     CTPQASLSDEAWEKLMLSDENNKQHIREAIVAMERNNQSNYWEALGKVECPDM"
     gene            3376..4194
                     /gene="nlpA"
                     /locus_tag="JN078_003821"
     CDS             3376..4194
                     /gene="nlpA"
                     /locus_tag="JN078_003821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpA"
                     /protein_id="HAY9042852.1"
                     /translation="MKLTTHHLRTGAALLLAGILLAGCDQSSSDAKHIKVGVINGAEQ
                     DVAEVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGELDANVFQHRPFLEQDNQAHGY
                     KLVAVGNTFVFPMAGYSKKITTVAQIKEGATVAIPNDPTNLGRALLLLQKEKLITLKE
                     GKGLLHTALDITDNPRHLQIMELEGAQLPRVLDDPKVDVAIISTTYIQQTGLSPVHDS
                     VFIEDKNSPYVNILVAREDNKNAENVKEFLQSYQSPEVAKAAETIFNGGAVPGW"
     gene            complement(4221..5120)
                     /locus_tag="JN078_003822"
     CDS             complement(4221..5120)
                     /locus_tag="JN078_003822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005030206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HAY9042853.1"
                     /translation="MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEQSQMSSQFLTMTRL
                     IFAGLILLTLSFVHGDKIFSIINNHKDAISLLIFSVVGALTVQLTFLLTIEKSNAATA
                     TVLQFLSPTIIVAWFSLVRKSRPGILVFCAILTSLVGTFLLVTHGNPTSLSLSPAALF
                     WGIASAFAAAFYTTYPSTLIARYGTLPVVGWSMLIGGLILLPFYARQGTNFVVNGSLI
                     LAFFYLVVIGTSLTFSLYLKGAQLIGGPKASILSCAEPLSSALLSLLLLGITFTLPDW
                     LGTLLILSSVILISMDSRRRPEK"
     gene            complement(5231..5434)
                     /locus_tag="JN078_003823"
     CDS             complement(5231..5434)
                     /locus_tag="JN078_003823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000965477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transporter"
                     /protein_id="HAY9042854.1"
                     /translation="MLYFQDLMPEKIGSATTLYANTSRVGWIIAGSVDGIMVEIWSYH
                     ALFWLAIGMLGIAMICLLFIKDI"
BASE COUNT         1297 a         1238 c         1395 g         1509 t
ORIGIN      
        1 ttcccttaag tttacgtatt ggtatcacca gcggaattgg attatttatc gccttaatgg
       61 gattaaaaaa tactggcgtt attgtcgcca ataaagacac gctggtgatg attggcgatt
      121 taagttctca cggcgtgttg ttaggtattt tagggttttt tattataacc gtgttgtcat
      181 cacgtcattt tcatgccgcg gtgctggttt ctatagtggt gacgtcttgc tgtggattat
      241 ttttcggtga tgttcatttt agcggcgtct attccattcc gcctgatatt agcggcgtca
      301 ttggtgaagt agatttgagc ggcgcgttaa cacttgaact cgccggtatc attttctcct
      361 ttatgctgat caacctattt gattcatcag gaacattaat tggtgtaact gataaagcgg
      421 gcttaataga tggtaacggt aaattcccca atatgaataa ggcgctgtat gttgatagcg
      481 tcagttcggt ggcgggtgcg tttatcggca cctcgtctgt tactgcctat attgaaagta
      541 cttctggtgt ggcagtcggt ggccgcacgg ggctgactgc ggttgtggtt ggcgttatgt
      601 tcctgttggt tatgttcttc tcaccgctgg tggcgatggt tcctccttac gcaaccgccg
      661 gagcgttaat ctttgttggc gtgctgatga cttcgagcct ggcgcgcgtt aactgggatg
      721 attttaccga atcggtgcct gcgtttatta ccacggtgat gatgcccttt actttctcga
      781 tcaccgaagg gattgcactc ggctttatgt cgtactgcat catgaaagtg tgcaccgggc
      841 gctggcgcga tctgaacctg tgtgtggtgg tggtcgcagc tctgtttgca ctgaagatta
      901 ttctggtgga ttagtaactg gcgagggttt ccagatatca tgagttctga ttacgcagga
      961 gaactcatga tctggataat gctcgccacg ctggcggtag tgtttgtggt tggttttcgg
     1021 gtgctgacat ccggggccag aaaagcgatt cgccgtctca gtgatcggct gaatatcgat
     1081 gtcgtacccg tggagtcgat ggtcgatcaa atgggaaagt cagccggtga cgaattttta
     1141 cgttatttgc atcgcccgga tgagtcgcac ctgcaaaacg ccgcgcaggt gttgctcatc
     1201 tggcaaattg tcattgtcga tggtagcgaa cagaacctgc tgcaatggca tcggatttta
     1261 caaaaagccc gtcttgccgc gccgattacc gatgctcaag tcaggctggc gctgggtttt
     1321 ctgcgcgaaa ccgaacctga aatgcaggat attaatgctt ttcagatgcg ctataacgcg
     1381 ttctttcagc ctgccgaggg cgttcactgg ctgcattaaa accgcttcgt cttatcagcc
     1441 tacagaccgc gcctgacctg tcgggtggat aagacgttca cgccgcatcc ggtaatcttt
     1501 gccctgttcc gtttcgatct taactccagc tcaagcaaca ccgtaaaagt tgcaaaaacg
     1561 ttaaatgcgt cacacatttc aatgttaaag tggtcggctt ttcccctgaa acatgccacg
     1621 ggtaacacca tgagtgaatt tattgccgaa aaccgcggcg cggatgccat cacccgaccg
     1681 aactggtcag ccgttttctc ggtggcgttt tgtgtcgcct gtctgattat cgttgagttt
     1741 ttgcccgtca gtttgttgac gccaatggcc caggatttag gcatttcgga aggggttgcc
     1801 gggcaatcgg tgaccgtgac cgcctttgtg gcaatgtttg ccagtttgtt tattacccag
     1861 acaattcagg ctactgaccg ctgctacgtt gttattttgt ttgccgtttt gctgacgctc
     1921 tcctgcttgc tggtttcctt tgctaactca ttcagtttgc ttttaatcgg tcgtgcctgt
     1981 ctggggctgg cgctgggcgg gttctgggcg atgtcggcgt cgctgaccat gcgtctggtg
     2041 ccgccgcgta cggtgccgaa ggcgctgtcg gtgatcttcg gcgcggtttc tattgcgctg
     2101 gtgattgccg cgccgttggg cagtttttta ggcgagctta tcggttggcg caatgtcttt
     2161 aatgcggcgg cggtgatggg cgtgctgtgt attttctggg ttatcaaatc attgccttca
     2221 ctgccaggcg aaccctcgca tcagaaacaa aatactttcc gcttattaca acgtccgggt
     2281 gtgatggcag ggatgatcgc catcttcatg tctttcgccg ggcagtttgc tttcttcacg
     2341 tatattcgcc cggtgtatat gaacctggcg ggattcggcg tggatggctt aacgctggtg
     2401 ctgttgagtt ttggtatcgc cagctttatt ggtacgtcgc tttcgtcgtt cattcttaaa
     2461 cgttcggtaa aactggcctt agcaggcgcg ccgttaatac tggctgtgag tgcgttggta
     2521 ctgacgttgt ggggaagcga taaaatcgtt gctaccggcg tggcgattat ctgggggcta
     2581 acttttgcat tggttcccgt cggctggtca acgtggatca cccgctcgct ggccgatcag
     2641 gcagaaaaag ccgggtctat tcaggtggcg gttattcagc ttgctaatac ctgtggcgcg
     2701 gcaatcggcg gttatgcgct ggataatatt ggtctgactt cgccgttgat gttgtccggc
     2761 acattgatgt tgctgactgc attgttggtt actgcaaagg tgaaaatgaa gaaatcctga
     2821 tatcaggtaa agaagcgttg gtcagtagtt gttgctgttc ttacatatcc gggcattcta
     2881 ccttacccaa cgcttcccaa taattgctct gattattacg ttccatcgcc acgatggcct
     2941 cgcgtatatg ttgtttattg ttttcatctg acaacattaa cttttcccac gcttcatctg
     3001 ataatgacgc ctgtggcgtg caaattttac gtaaatcttg taataccgtg gttttctctt
     3061 ttgcggactg cagtgagcta aaaggcgact cggcgtatac gatgcctggc atagcgaaaa
     3121 aagtgaaaat aagcagtagt gtcgttggtt tcatggattc aaccttttac aaatgtgtat
     3181 cgaatgaagc ataagtgtag tttgctttca tcgctctcat cattctgtac gaaacgcgct
     3241 tgcgtggtca gtaagaagtg ccagacttta tattccactt ttattccttt ttattcttat
     3301 cgatagcgtt tcgtttttta aaccgcagcg accttaccgc tatagtcagg taatcattaa
     3361 taaaaggata aaaaaatgaa actgacaaca catcatctac ggacaggggc cgcattattg
     3421 ctggccggaa ttctgctggc aggttgcgac cagagtagca gcgatgcaaa acacattaaa
     3481 gttggcgtta taaatggcgc agaacaagat gtcgcggaag tcgctaaaaa ggtggcaaaa
     3541 gagaaatatg gcctcgatgt tgaactggta ggatttagcg gttcgttgct accgaacgat
     3601 gcgacaaatc atggcgaact tgatgcgaat gtcttccagc atcgaccctt tcttgaacaa
     3661 gataatcagg cgcatggtta taaactggta gcggtgggaa atacgtttgt cttccctatg
     3721 gcgggttatt ccaaaaaaat cacaaccgtg gcgcaaataa aagaaggcgc gacagtggcg
     3781 atccccaacg acccgaccaa ccttggtcgc gcacttttac tgttgcaaaa agagaagcta
     3841 attactctga aagagggaaa agggttatta cataccgcgc tggatataac cgataatcct
     3901 cgtcatttgc agattatgga actcgagggg gcgcagcttc cgcgcgtact ggatgatccc
     3961 aaagttgatg tagcgattat cagcaccact tacattcagc agacagggct ttctccggtg
     4021 cacgacagcg tatttattga agataagaat tcgccgtatg tgaatatttt ggtggcacgg
     4081 gaagataata agaatgcaga aaacgtgaag gaatttctgc aatcttatca atcacccgaa
     4141 gtcgctaaag cggcagaaac catttttaac ggtggcgcgg tgcctggctg gtaattctca
     4201 ctcatgccgc gccggacgat ttatttttct ggccggcgac gggaatccat tgaaatcaaa
     4261 atcaccgatg acagaatcag cagcgttccc agccagtccg gtaatgtgaa cgtgatcccc
     4321 agcaacagca aagagagtag cgcgctactt aatggttctg cacagctcaa aatgctggct
     4381 tttggaccgc caattaattg tgctcctttc aggtacagac taaatgtcag ggacgtacca
     4441 atgaccacca aataaaaaaa cgccagaatc aaactgccgt taacgacaaa gtttgttcct
     4501 tgtctggcat aaaaaggcaa cagaatcaga ccgccaatca gcatactcca gccgacgact
     4561 ggtaacgtgc catagcgggc aattagcgtt gagggatagg tggtatagaa tgcagcagca
     4621 aatgccgagg caatgcccca gaacaacgcg gcaggagaga gcgataatga cgtcggatta
     4681 ccgtgtgtca ccaataaaaa agtcccgacc agcgatgtca aaatagcgca gaaaaccaga
     4741 atgcccgggc gcgatttacg caccagtgag aaccaggcga cgataatcgt cggtgagagg
     4801 aattgcagca ccgttgccgt ggctgcgttc gatttttcga tggttagcaa aaaagtgagc
     4861 tgtacagtta gcgcgccaac cacggaaaaa atcagcaggc taatggcatc tttatgattg
     4921 ttaataatag aaaagatttt atcgccatga acaaatgaca gcgtcagtag aatcaaaccg
     4981 gcgaatatca aacgcgtcat agtcaaaaac tgcgacgaca tctggctttg ctccatgatg
     5041 tattgcgcgc agacccctga acttccccac aacacggcgg caatcagaac gttcagcatc
     5101 ccctttctgg tggaacccat ttttccctct gcatactgtt ttgtcgttta tgtatgcagg
     5161 catgatagca aaaatggcga ggatggctct gtttgcgcca cgccgatttt tcttagccca
     5221 gactggtgag ctaaatatct ttaataaaca gcaggcaaat catcgcaata cccaacatcc
     5281 ctatcgccag ccagaacaac gcatggtagc tccagatttc aaccataatt ccgtcaacag
     5341 agccggcgat aatccagccg acgcgtgaag tatttgcata taacgttgtc gcagagccta
     5401 ttttttcagg cattaagtcc tgaaaataaa gcatgccga
//
LOCUS       DADMJB010000212         5429 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.215, whole genome shotgun sequence.
ACCESSION   DADMJB010000212 DADMJB010000000
VERSION     DADMJB010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5429)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5429)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5429
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.215"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(39..114)
                     /locus_tag="JN078_003824"
     tRNA            complement(39..114)
                     /locus_tag="JN078_003824"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(79..81),aa:Val,seq:tac)
     gene            374..1789
                     /gene="gltX"
                     /locus_tag="JN078_003825"
     CDS             374..1789
                     /gene="gltX"
                     /locus_tag="JN078_003825"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HAY9042855.1"
                     /translation="MKIKTRFAPSPTGYLHVGGARTALYSWLFARNHGGEFVLRIEDT
                     DLERSTPEAIEAIMDGMNWLSLEWDEGPYYQTKRFDRYNAVIDQMLEEGTAYKCYCSK
                     ERLEALREEQMAKGEKPRYDGRCRHSHEHHADDEPCVVRFANPQEGSVVFDDQIRGPI
                     EFSNQELDDLIIRRTDGSPTYNFCVVVDDWDMEITHVIRGEDHINNTPRQINILKALK
                     APVPVYAHVSMINGDDGKKLSKRHGAVSVMQYRDDGYLPEALLNYLVRLGWSHGDQEI
                     FTREEMIKYFTLNAVSKSASAFNTDKLLWLNHHYINALPPEYVATHLQWHIEQENIDT
                     RNGPQLADLVKLLGERCKTLKEMAQSCRYFYEDFAEFDADAAKKHLRPVARQPLEVVR
                     DKLAAITDWTAENVHHAIQATADELEVGMGKVGMPLRVAVTGAGQSPALDVTVHAIGR
                     TRSIERINKALAFIAERENQQ"
     gene            complement(1840..2211)
                     /locus_tag="JN078_003826"
     CDS             complement(1840..2211)
                     /locus_tag="JN078_003826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding transcriptional regulator"
                     /protein_id="HAY9042856.1"
                     /translation="MTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILV
                     DTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGVRAPAYRQIINAIDNMTDIEQEKVA
                     QFLSREGIRNFLARLDIDESA"
     gene            complement(2234..2578)
                     /locus_tag="JN078_003827"
     CDS             complement(2234..2578)
                     /locus_tag="JN078_003827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708260.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding transcriptional regulator"
                     /protein_id="HAY9042857.1"
                     /translation="MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHV
                     NEQVREYIRNAERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGII
                     GLLQRLGIRDSK"
     gene            2814..2889
                     /locus_tag="JN078_003828"
     tRNA            2814..2889
                     /locus_tag="JN078_003828"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2847..2849,aa:Ala,seq:ggc)
     gene            2929..3004
                     /locus_tag="JN078_003829"
     tRNA            2929..3004
                     /locus_tag="JN078_003829"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2962..2964,aa:Ala,seq:ggc)
     gene            3213..5402
                     /locus_tag="JN078_003830"
     CDS             3213..5402
                     /locus_tag="JN078_003830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing phosphodiesterase"
                     /protein_id="HAY9042858.1"
                     /translation="MFVEHNLIKNIKIFTLAFTLTVVLIQLSRFISPLAIIHSSYIFL
                     AWMPLCVMLSILFIFGWRGVVPVLCGMFCTNLWNFHLSFLQTAVMLGSQTFVVLCACA
                     ILRWQLGTRWRYGLTSRYVWQRLFWLGLVTPIGIKCSMYLVGSFFDFPLKISTFFGDA
                     DAIFTVVDLLSLFTAVLIYNMLFYYLTRMIVSPHFAQILWRRDIAPSLGKEKRAFTLS
                     WLAALSVLLLLLCTPYENDFIAGYLVPVFFIIFTLGVGKLRYPFLNLTWAVSTLCLLN
                     YNQNFLQGVETEYSLAFILAVLISFSVCLLYMVRIYHRSEWLNRRWHLQALTDPLTLL
                     PNFRALEQAPEQEAGKSFCCLRIDNLEFMSRHYGLMMRVHCIRSICRTLLPLMQENEK
                     LYQLPGSELLLVLSGPETEGRLQHMVNILNSRQIHWNNTGLDMGYGAAWGRFDGNQET
                     LQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQTTKQVLLLNTIRTALDQGDLLLYA
                     QPIRNKEGEGYDEILARLKYDGGIMTPDKFLPLIAQFNLSARFDLQVLESLLKWLATH
                     PCDKKGPRFSVNLMPLTLLQKNIAGRIIRLFKRYHISPQAVILEITEEQAFSNAESSM
                     YNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADIIKIDGVFVKDIVTNTLDAMIVRS
                     ITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGYLIGRPQPLAD"
BASE COUNT         1267 a         1303 c         1387 g         1472 t
ORIGIN      
        1 caatttcttg ctacacggcg gagactacat aaagtagttg gtgggtgatg acgggatcga
       61 accgccgacc ccctccttgt aagggaggtg ctctcccagc tgagctaatc accccccgct
      121 gtgtggagtc gcattatagg gagagttcaa aatgagtcaa cgcattttct aaagaaattg
      181 ttcgttcgtc gtaaatttaa gcaagatgat cgcaaaatag accgtgttgc gcaatttgtc
      241 aacgaaaaca ataatgcgta aggtagaaac ccgaactaca ttgaggaatc aggcgggagt
      301 gatagaatat cgcccactca atttttccag gatttgccgg ttgtcggcat ctttctaaac
      361 gtaaggccat ttcatgaaaa tcaaaactcg cttcgcgcca agcccaacag gctatctgca
      421 cgttggcggc gcgcgtactg ccctttactc ctggcttttt gcacgtaacc acggcggtga
      481 gttcgtgctg cgtattgaag acaccgatct tgagcgttcc acgccggaag ctatcgaagc
      541 cattatggat ggcatgaact ggctgagcct ggagtgggat gaaggtccgt actaccagac
      601 caaacgtttt gatcgctaca acgcggtgat cgatcagatg ctggaagagg gcactgctta
      661 taaatgctat tgctctaaag agcgcctgga agcgctgcgc gaagagcaaa tggcgaaagg
      721 tgagaagccg cgttatgacg gtcgctgccg ccacagccat gagcatcacg ctgatgatga
      781 accgtgcgtt gtacgttttg ctaacccgca ggaaggttct gttgtttttg acgatcagat
      841 ccgtggtccg atcgagttca gcaaccagga actggacgat cttattattc gccgtaccga
      901 tggttcccca acctataact tctgtgtggt tgtcgatgac tgggatatgg aaatcaccca
      961 cgttatccgt ggcgaagacc atatcaacaa cacgccacgc cagatcaaca ttcttaaggc
     1021 cctgaaagcg ccggtgccgg tttacgcgca cgtttctatg atcaacggcg atgacggtaa
     1081 aaaactgtcc aaacgtcacg gggcggtcag cgtaatgcag tatcgtgatg acggttattt
     1141 gccagaagca ctgctgaact atctggtgcg tctgggctgg tcccacggcg atcaggaaat
     1201 cttcactcgt gaagagatga tcaaatactt caccctgaat gccgtcagca aatctgccag
     1261 tgcgttcaac accgacaagc tgctgtggct gaaccatcac tacattaacg cgctgccgcc
     1321 ggagtatgtt gctactcact tacagtggca cattgagcag gaaaatatcg atacccgtaa
     1381 cggcccgcag ctggctgatc tggtgaaact gctgggcgaa cgctgcaaga cgctgaaaga
     1441 gatggcacag agctgccgtt atttctacga agattttgct gagttcgatg ccgacgccgc
     1501 gaaaaaacat ctgcgtccgg tagcgcgtca gccgctggaa gtggttcgtg acaaactggc
     1561 cgcgattact gactggaccg ctgaaaacgt tcatcacgct attcaggcga cggcggatga
     1621 gctggaagtg ggtatgggta aagttggtat gccgctgcgt gtcgccgtaa ccggtgcggg
     1681 gcagtctccg gcactggatg ttaccgttca cgcaattggt aggacccgca gtattgagcg
     1741 tatcaacaaa gcgctggctt ttattgctga acgcgaaaac cagcagtaat tagcgcataa
     1801 aagataaacg gcaggagata atatcctgcc gttttttatt tatgctgatt cgtcaatatc
     1861 gagacgggcg aggaaattgc gaattccttc acgtgacaaa aattgcgcga ctttttcctg
     1921 ctcaatgtct gtcatattat ctatcgcgtt gatgatttgt cgatacgccg gggcgcgtac
     1981 tccaggagcg tattcagcaa ttctctcttc agcttccatc aacattggtg tgttatggaa
     2041 ggctggcgtg ttctgaataa actcgcaaac ttgcgtatcg accagaataa gtctggcacg
     2101 accgcctttc acgccgggaa atttttccgt tttccagcct ttttctctga tccaacggtt
     2161 aacagtttgt ttagccacac cgaggcattc agccagttct tcggtggtca ttttattgcg
     2221 taatcttttc atattatttg ctatcgcgaa tccctaagcg ttgtaacaat ccgataatcc
     2281 cttcccgcag aagcaaggat gtaaactgtt tttgttcaac tggcgtcatc tctttcgcca
     2341 gtgtcaccag caatacttca agcggcgcat caccagaaag ggcaggcgct tctccctgac
     2401 cttctggacg ttcagcattg cgaatatatt cacgaacctg ttcattgacg tgaaccagtc
     2461 gggctttgcc accctggacg ccaggttttg gtgacgttgt ccagccttcc ttgcgtaccc
     2521 atttattaat ggtctggcgg ctatagccgg tcagtctggc aagttcatct ggtgtcatcc
     2581 tctccttgaa cataacaatt ccctgaatgt atgtgggtct attagtagtt cattttataa
     2641 caccacttta caggaaaccg tgacatgaat aactactgaa tgcgagcggt tttccaaaat
     2701 tgttcatttg cctgattttt cagcgattga aactacacgt tgcaatttgc cgttgacaca
     2761 ttcgggcgga attcatatga tgccgcccgt caactcgaca agctttacgt gacggggcta
     2821 tagctcagct gggagagcgc ttgcatggca tgcaagaggt cagcggttcg atcccgctta
     2881 gctccaccaa attttgcacc cagcaaattt ggtacgtaaa cgcatcgtgg ggctatagct
     2941 cagctgggag agcgcttgca tggcatgcaa gaggtcagcg gttcgatccc gcttagctcc
     3001 accaaatttc caaccctcgc tgcaaagcgg gggttttttg tctctgcttt ttgccgcttt
     3061 tgtaatacag tctacgtccg ggttagtgcc gcctggtgaa agcatcattg gatgaaaaat
     3121 cggcaacagg ctggccccct gtttgcttcg cgatgcgaat aaacttatta tttgtgtgcc
     3181 tgaaaactcc gatcagtgag agtagtgtac tcatgtttgt ggagcataac ctgataaaaa
     3241 atatcaagat attcacacta gcgtttacgc tcaccgtggt acttattcag ctatcccgtt
     3301 ttatttcgcc acttgccatt atccattcca gttatatctt tctggcgtgg atgccactgt
     3361 gcgtaatgct gtcaatcttg tttatctttg gctggcgagg tgtcgttccc gttttatgcg
     3421 ggatgttttg caccaatctg tggaactttc atctctcttt tttacagact gcggtcatgc
     3481 tcggtagcca gacgtttgtc gtgttgtgtg cctgcgcaat attacgctgg cagctgggga
     3541 cgcgttggcg ttatggattg accagccgat atgtctggca acgtctgttc tggcttggtt
     3601 tggtgacgcc gatcggcatc aaatgcagca tgtatcttgt ggggagcttc tttgatttcc
     3661 cgctaaagat atccaccttt ttcggcgatg cggatgccat tttcacggtc gttgatttgc
     3721 taagcctttt caccgctgtg ctgatttaca acatgctttt ctactatctc actcgcatga
     3781 ttgtaagtcc ccactttgcg cagatattgt ggcgcaggga tatcgcgccg tcgttgggca
     3841 aagagaaacg cgcatttacc ttaagctggc tggcagcgtt aagcgtgctt ctacttctgt
     3901 tgtgcacacc ttatgaaaac gactttattg ccggttacct ggtacccgtt ttcttcatca
     3961 tctttaccct cggggtcggt aagcttcgct atccgttttt aaatctcacc tgggctgttt
     4021 caacgctttg ccttctgaat tacaaccaga actttttgca aggggtggaa accgaatatt
     4081 cgctggcatt tattcttgcg gtgctgattt cctttagcgt ttgcctgctc tatatggtgc
     4141 gcatttatca tcgcagtgaa tggcttaatc gccgctggca tttgcaggcg ctgaccgatc
     4201 cgttaacgct cctgcccaac ttccgtgcgt tggaacaagc gccggagcaa gaggcgggca
     4261 agagtttttg ctgcctgcgc attgataatc ttgagtttat gagtcgtcat tacggcttaa
     4321 tgatgcgcgt tcactgtatc cgctcaattt gccgtacgct gctgccgttg atgcaggaaa
     4381 acgaaaagtt gtatcaattg ccgggtagtg aactgctgtt agtgctgagc gggccggaaa
     4441 cggaagggcg actccagcat atggttaaca tcctgaatag tcggcaaatt cactggaaca
     4501 ataccgggct ggatatgggc tatggtgctg cctgggggcg ttttgatgga aatcaggaaa
     4561 ccctgcaacc cttgttgggg cagttaagct ggctggcgga gcaatcctgc gcacatcatc
     4621 atgtgctggc gctggatagc agagaggaga tggtttccgg gcagaccact aaacaggtgc
     4681 tattgctgaa taccattcgc acggcgttag atcagggtga tttgctgctc tacgcccagc
     4741 caattcgcaa caaagagggt gaaggttatg atgagatcct cgcgcgactg aaatatgacg
     4801 gcggcattat gaccccggat aagtttctgc cccttattgc tcagtttaac cttagcgcgc
     4861 gttttgattt gcaagtgctg gaatccttgt tgaagtggct ggcaacacac ccttgcgaca
     4921 aaaaaggacc gcgcttttca gtcaatttaa tgccgctcac gctgctgcaa aagaatattg
     4981 ccgggcggat tattcgtctg tttaagcgtt atcacatctc cccgcaggcg gtcattcttg
     5041 agatcaccga ggagcaggcg ttttctaacg cagaaagcag catgtacaac atcgagcagc
     5101 tgcataagtt tggtttccgg attgcgattg atgactttgg caccggctat gccaactacg
     5161 aacggttaaa gcgtttgcag gctgatatca tcaaaattga tggcgtcttt gtgaaagata
     5221 ttgtcacgaa cacgctggat gcgatgattg tgagatcaat taccgatctg gcgaaagcga
     5281 agtcattgag tgtggtcgcg gagtttgtcg agacgcaaca gcagcaggcg ctattgcata
     5341 agctcggggt gcaatatctg caagggtatt tgattggtcg cccgcagcca ttagctgatt
     5401 aacaggcgta aaaaaaccgg ggaattatc
//
LOCUS       DADMJB010000213         5381 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.216, whole genome shotgun sequence.
ACCESSION   DADMJB010000213 DADMJB010000000
VERSION     DADMJB010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5381
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.216"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..662
                     /locus_tag="JN078_003831"
     CDS             <1..662
                     /locus_tag="JN078_003831"
                     /inference="COORDINATES: protein motif:HMM:NF013544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY9042859.1"
                     /translation="PSQPLQQSLKDLERAYKNFFRKRAAFPRFKKRGQNDAFRYPQVK
                     LDQENSRIFLPKLGWMRYRNSRQVTGVVKNVTVSQSCGKWYISIQTESEVSTPAHPSA
                     SMVGLDAGVAKLATLSDGTVFEPVNSFQKNQKTLARLQRQLSRKVKFSNNWQKQKRKI
                     QRLHSCIANIRRDYLHKVTTAVSKNHAMIVIEDLKVSNMSKSAGVRSASRGAMSGQNQ
                     V"
     gene            614..985
                     /locus_tag="JN078_003832"
                     /pseudo
     CDS             614..985
                     /locus_tag="JN078_003832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001694063.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family element transposase accessory
                     protein TnpB"
     gene            complement(1025..2239)
                     /gene="ydcO"
                     /locus_tag="JN078_003833"
     CDS             complement(1025..2239)
                     /gene="ydcO"
                     /locus_tag="JN078_003833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001748359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BenE family transporter YdcO"
                     /protein_id="HAY9042860.1"
                     /translation="MLRCLYAITYEVTMRLFSIPPPTLLAGFLAVLIGYASSAAIIWQ
                     AAIVARATTAQISGWMTALGLAMGVSTLTLTLWYRVPVLTAWSTPGAALLVTGLQGLT
                     LNEAIGVFIVTNALIVLCGITGLFARLMRIIPHSLAAAMLAEILLRFGLQAFASLDGQ
                     FTLCGSMLLVWLATKAVAPRYAVIAAMIIGIVIVIAQGDVVTTDVVFKPVLPTYITPD
                     FSFAHSLSVALPLFLVTVASQNAPGIAAMKAAGYSAPVSPLIVFTGLLALVFSPFGVY
                     SVGIAAITAAICQSPEAHPDKDQRWLAAAVAGIFYLLAGLFGSAITEMMAALPVSWIQ
                     MLAGLALLSTIGGSLYQALHNERERDAAVVAFLVTASGLTLVGIGSAFWGLIAGGVCY
                     VVLNLIADRNQY"
     gene            2292..2828
                     /locus_tag="JN078_003834"
     CDS             2292..2828
                     /locus_tag="JN078_003834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAY9042861.1"
                     /translation="MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNE
                     SSPTVATLWKIATGLNVPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHF
                     SIQMASGAISESTPHEKGVIEHVVVIDGQLDLCVDGEWQTLNCGEGVRFAADVTHIYR
                     NGGEQTVHFHSLIHYPRS"
     gene            2901..4862
                     /gene="rlhA"
                     /locus_tag="JN078_003835"
     CDS             2901..4862
                     /gene="rlhA"
                     /locus_tag="JN078_003835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA 5-hydroxycytidine C2501 synthase"
                     /protein_id="HAY9042862.1"
                     /translation="MTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNA
                     SNSLKDIAELVPFAHRYGAKIFVTLNTILHDDELEPAQRLITDLYQTGVDALIVQDMG
                     ILELDIPPIELHASTQCDIRTVEKAKFLSDVGFTQIVLARELNLDQIRAIHQATDATI
                     EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLS
                     MKDNDQTANLGALIDAGVRSFKIEGRYKDMNYVKNITAHYRQMLDAIIEERGDLARAS
                     SGRTEHFFVPSTEKTFHRGSTDYFVNARKGDIGAFDSPKFIGLPVGEVLKVAKDHLDV
                     AVTEPLANGDGLNVMIKREVIGFRANTVEKTGENQYRVWPNEMPADLHKIRPHHPLNR
                     NLDHNWQQALTKTSSERRVAVDIELGGWQEQLILTLTSEEGVSITHTLDGQFDEANNA
                     EKAMNNLKDGLAKLGQTLYYARDVQINLPGALFVPNSLLNQFRREAADMLDAARLASY
                     QRGSRKPVAEPAPVYPQTHLSFLANVYNQKAREFYHRYGVQLIDAAYEAHEEKGEVPV
                     MITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIGKIKN
                     HILKMPLPGSVVASVSPDELLKTLPKRKG"
     gene            complement(4954..5184)
                     /locus_tag="JN078_003836"
     CDS             complement(4954..5184)
                     /locus_tag="JN078_003836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncJ family protein"
                     /protein_id="HAY9042863.1"
                     /translation="MFTKALSVVLLTCALFSGQLMAGHKGHEFVWVKNVDHQLRHEAD
                     SDELRAVAEESAEGLREHFYWQKSRKPEAGQR"
BASE COUNT         1411 a         1382 c         1358 g         1230 t
ORIGIN      
        1 ctccctcaca gccattgcaa cagtcactga aagaccttga gcgggcttac aaaaacttct
       61 tccggaagcg ggctgctttt ccccgattca aaaagcgggg acagaatgat gcattccgct
      121 acccgcaggt taagctcgat caggaaaaca gccgtatttt tctgccgaaa ctgggctgga
      181 tgcgctaccg gaatagccgt caggtcacgg gtgttgtgaa aaatgtcact gtcagccagt
      241 cctgcggtaa gtggtacatc agtattcaga cagaaagtga agtatccact ccggctcacc
      301 cttcagcatc aatggtcgga ctggatgctg gcgtggctaa actcgccacg ctgtcagatg
      361 gcacagtctt tgagcctgta aacagttttc agaaaaacca gaagacgctg gcgagacttc
      421 agcgacagtt aagccgcaag gtcaaattca gcaacaactg gcagaagcag aaacgcaaaa
      481 tacagcgact gcattcctgt atcgcaaata tccgcaggga ctaccttcac aaagtcacaa
      541 cggccgtcag caaaaaccac gcaatgatag tcattgagga tttgaaggtc agcaacatgt
      601 caaagtcagc aggggtacgg tcagccagcc ggggcgcaat gtccgggcaa aatcaggttt
      661 aaaccgttcg atactggatc agggctggta tgaaatgcac cgccagcttg agtacaagca
      721 gctctggcgt ggcggtcagg tgcttgctgt tccgccagcg tatacaagcc agcgttgcgc
      781 gtactgtggt catacagcga aagagaaccg cctgtcacaa agtaaattca gatgccaggt
      841 atgtggatat acagcgaacg ccgatgtaaa tggcgctcgt aacattttag cggcggggca
      901 cgccgttctt gcctgtggag agatggtgca gtcaggccgc ccgttgaagc aggaacccac
      961 cgaaatgatt caggcgacag cctgaacgta gcagggatcc acgtctttca gggcgtgtag
     1021 gatgtcaata ttggtttctg tcagcgatta aattcaacac cacgtaacaa acgcctccgg
     1081 caattaatcc ccagaacgca gaaccaatcc cgaccagcgt caatccactt gccgttacca
     1141 gaaatgccac caccgccgcg tcgcgctcac gctcattatg cagcgcctga tacaaactgc
     1201 cgccaatggt actcaacagc gccagacctg ccagcatctg gatccaactt acgggcaggg
     1261 cagccatcat ctcggtaatg gcactaccaa acagacctgc gagcaaatag aaaatgcctg
     1321 caacggcagc tgccagccaa cgttgatctt tatccggatg cgcttccggg ctttggcaaa
     1381 tagccgcggt gattgccgca ataccgacgg aataaacgcc gaaaggggaa aaaaccagtg
     1441 ccagcaatcc agtaaataca attaatggcg aaacaggagc cgaatatcca gctgctttca
     1501 ttgctgcgat acccggtgcg ttttgcgatg ccaccgtcac cagaaaaagg gggagtgcaa
     1561 cgctcaggct gtgagcaaac gaaaaatcag gggtaatata agtggggaga acgggtttaa
     1621 agacaacatc agttgtgaca acgtcacctt gcgcgatgac gatcacgatc ccaataatca
     1681 tcgcggcaat taccgcatag cgcggcgcaa cggccttggt tgccagccat accagcaaca
     1741 tacttccaca caacgtaaat tgaccgtcca gactggcaaa cgcctgtaaa ccaaagcgta
     1801 ataaaatctc ggcaagcatt gccgccgcaa gcgagtgcgg aataatgcgc atcagacgag
     1861 caaagagtcc cgttatgccg cagaggacta ttaacgcgtt ggtgacaata aaaacgccga
     1921 tggcttcgtt aagtgttagt ccctgcaatc cggtgaccaa caaagccgcg ccaggcgttg
     1981 accatgcggt gagaacaggt acgcgatacc ataatgtcag agtcagcgta ctgacgccca
     2041 ttgccagccc cagcgccgtc atccagccag agatttgtgc agtggtggct ctggcgacaa
     2101 tcgctgcttg ccagattatt gccgctgaac tggcgtagcc aattaatacc gccagaaacc
     2161 ccgccagtag cgtgggtgga ggaatagaaa acagacgcat agtcacctcg tacgttatag
     2221 cgtacaggca ccgtagcatt tgtccgttat aacgcacaag tgataaactt ccgttttgcc
     2281 ggaggagtcg catggaaaat ctcgctcgct ttttatccac cacacttaaa caactacgcc
     2341 agcagcgcgg ctggagtctt tcgcgactgg cagaagcgac gggcgtttct aaagcaatgt
     2401 tagggcagat tgagcgtaat gagtccagtc cgacggtcgc gacattatgg aaaattgcca
     2461 ccgggttgaa cgtaccattt tcaacattta tttctccgcc gcagtccgct acgccttcag
     2521 tttatgatcc acaacagcag gcgatggtga tcacttcgct gtttccttat gatccacaac
     2581 tctgctttga acacttctcg attcagatgg catctggtgc aataagcgaa tcgacgcccc
     2641 atgagaaggg ggtaatcgaa catgtcgtcg tcattgatgg acaacttgat ctgtgcgttg
     2701 atggggaatg gcagaccctt aattgtgggg aaggcgttcg atttgctgca gacgtcacgc
     2761 atatctatcg taatggtggg gagcaaaccg tacattttca ttccctcatc cattacccgc
     2821 gcagttaagc gggaaaacta tttcgcaacg tcgcgcttgt ggctaaaata gccgccattt
     2881 ttcagctact ggataagaat gtgaccgtat cttctcatcg acttgaactg ttaagcccgg
     2941 cacgcgatgc cgccattgcc cgcgaagcta ttttgcacgg tgccgatgct gtttatatcg
     3001 gcggccctgg ttttggtgcc cgtcataatg ccagtaatag cctgaaagat attgccgagc
     3061 tggtgccgtt tgcccatcgt tatggtgcaa aaattttcgt cacgcttaac accattttgc
     3121 atgatgatga gctggaaccc gcgcaacggc tgattactga cctctaccag accggtgtcg
     3181 atgcgctgat tgttcaggat atggggattc tggaacttga tattccgccg attgaactgc
     3241 acgccagtac gcagtgcgac attcgtacag ttgaaaaagc gaagttcctc tctgatgttg
     3301 gcttcacgca gattgtgctg gcgcgagagc tgaatcttga tcagatccgc gcgattcacc
     3361 aggctacgga cgcgaccatt gaattcttta ttcatggggc actgtgcgtg gcctattcgg
     3421 gtcagtgcta catttctcat gcgcaaacag ggcgtagcgc caaccgtggc gattgctcgc
     3481 aggcgtgccg tttgccatac acattgaaag acgatcaggg gcgggtggtt tcctatgaaa
     3541 aacatctgct gtcgatgaaa gataacgatc agactgccaa cctcggcgcg ctgattgatg
     3601 ctggtgtacg ctccttcaag attgaaggtc gttacaaaga tatgaactac gtgaagaata
     3661 tcaccgccca ttatcgccag atgcttgatg ccattattga agaacgtggc gatctggcgc
     3721 gcgcttcatc aggtcgtact gaacatttct ttgttccatc gacggaaaag actttccacc
     3781 gtggtagcac agattatttt gtgaatgccc gtaaaggcga tattggcgcg ttcgattcgc
     3841 cgaaatttat cggcctgccg gtgggtgaag tattgaaagt ggcgaaagat catctcgatg
     3901 ttgccgtcac cgagccactg gcaaatggtg atggcctgaa cgtgatgatt aaacgtgaag
     3961 tcatcggttt tcgtgccaat acggtcgaga aaaccggaga aaatcagtac cgcgtctggc
     4021 ccaatgaaat gccagcagat ttgcacaaaa ttcgtccaca tcacccacta aaccgtaatc
     4081 ttgatcataa ctggcagcag gcactgacaa aaacctccag cgaacgtcgg gtggcggtag
     4141 acattgaact gggcggctgg caggaacaac tgattctgac cctcaccagt gaagagggtg
     4201 tcagcatcac gcatacgctg gacgggcagt tcgacgaagc caataacgcc gaaaaagcaa
     4261 tgaacaatct gaaggatggt ctggcaaaac tggggcaaac cctctattac gcccgcgatg
     4321 tgcaaattaa tttgccgggg gcgctgtttg taccaaacag tctgttaaac cagttccgcc
     4381 gtgaagctgc tgacatgctg gatgctgcgc gtcttgccag ttaccagcgc ggcagccgta
     4441 aaccggttgc tgagcctgcg ccggtttatc cgcaaacgca tctgagtttc ctcgcgaacg
     4501 tatacaacca gaaagcgcgt gaattttatc atcgctatgg tgtgcagctg attgacgcgg
     4561 cgtatgaggc acatgaagag aagggcgaag tcccggtgat gatcaccaag cattgtctgc
     4621 gctttgcctt taatctgtgc ccgaaacagg cgaaaggcaa tatcaaaagc tggaaggcga
     4681 cgccaatgca actggttaac ggcgatgaag tattaacgct aaagtttgat tgccgcccat
     4741 gcgagatgca cgtcattggc aaaatcaaaa atcacatact gaaaatgccg ttaccgggaa
     4801 gcgtagtggc atccgtaagt ccggatgagc tgctgaaaac attgcctaag cgaaaagggt
     4861 aaaacgccag ttttctggtt actcacaact cattgaatct gcatgatatt gcctgccggg
     4921 taaggcgtca cgccgcatcc ggcatcaaac gactcaacgt tgtcccgctt ctggtttgcg
     4981 cgatttttgc cagtaaaaat gctcgcgcaa accttccgcc gactcttccg ccacagcacg
     5041 caattcatcg ctgtccgctt catgacgcag ctgatgatcc acattcttta cccacacaaa
     5101 ttcatgtcct ttgtgccctg ccatgagttg tcctgagaac agcgcacacg ttaataagac
     5161 aaccgataac gccttcgtaa acatcctgcc acctttttct taccttttgc cgctatgatg
     5221 ccgatcgttt cttgaggtta ttattcagtt ttgcaaatta gcgcaaagaa attctggaat
     5281 cttccttcct gattttgcat tgcattctgt cgttgcggcg atttagtgct attttcgagc
     5341 aaattacaca cagaggtaaa cactaatgtt tactttgttg a
//
LOCUS       DADMJB010000214         5337 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.217, whole genome shotgun sequence.
ACCESSION   DADMJB010000214 DADMJB010000000
VERSION     DADMJB010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5337
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.217"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(890..1831)
                     /gene="fabY"
                     /locus_tag="JN078_003837"
                     /gene_synonym="yiiD"
     CDS             complement(890..1831)
                     /gene="fabY"
                     /locus_tag="JN078_003837"
                     /gene_synonym="yiiD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001666856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid biosynthesis protein FabY"
                     /protein_id="HAY9042864.1"
                     /translation="MYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGSERDAWDAMAH
                     HQMVVDEQGNLVAVGRLYINADNEASIRFMAVHPDVQDKGLGTLMAMTLESVARQEGV
                     KRVTCSAREDAVEFFAKLGFVNQGEITTPTTTPIRHFLMIKPVATLDDILHRGDWCAQ
                     LQQAWYEHIPLSEKMGVRIQQYTGQKFITTMPETGNQNPHHTLFAGSLFSLATLTGWG
                     LIWLMLRERHLGGTIILADAHIRYSKPISGKPHAVADLGALSGDLDRLARGRKARVQM
                     QVEIFGDETPGAVFEGTYIVLPAKPFGPYEEGGNEEE"
     gene            complement(1876..2313)
                     /gene="dtd"
                     /locus_tag="JN078_003838"
     CDS             complement(1876..2313)
                     /gene="dtd"
                     /locus_tag="JN078_003838"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000560980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HAY9042865.1"
                     /translation="MIALIQRVTRASVTVEGEVTGEIGAGLLVLLGVEKDDDEQKANR
                     LCERVLGYRIFSDAEGKMNLNVQQAGGSVLVVSQFTLAADTERGMRPSFSKGASPDRA
                     EALYDYFVERCRQQEMNTQTGRFAADMQVSLVNDGPVTFWLQV"
     gene            complement(2310..3183)
                     /locus_tag="JN078_003839"
                     /pseudo
     CDS             complement(2310..3183)
                     /locus_tag="JN078_003839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312836.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor BrkB family protein"
     gene            complement(3177..3776)
                     /gene="yihX"
                     /locus_tag="JN078_003840"
     CDS             complement(3177..3776)
                     /gene="yihX"
                     /locus_tag="JN078_003840"
                     /EC_number="3.1.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312835.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphatase"
                     /protein_id="HAY9042866.1"
                     /translation="MLYIFDLGNVIVDIDFNRVLGAWSDLTRVPLATLKKSFHMGEAF
                     HQHERGEISDEAFAEALCHEMALPLSYEQFSHGWQAVFVALRPEVIAIMHKLREQGHR
                     VVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSD
                     TVFFDDNADNIEGANQLGITSILVKDKTTIPDYFAKVLC"
     gene            complement(3917..4804)
                     /locus_tag="JN078_003841"
     CDS             complement(3917..4804)
                     /locus_tag="JN078_003841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001309103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase"
                     /protein_id="HAY9042867.1"
                     /translation="MKTERKNEHYLALQQAFDAPWPGPVGELVTLEKGNIHLQIYPHD
                     GARITSLKAFGSEVLRQWQPQRRAFQYGCFPMVPWAGRLGNATLNAGGQCYSLPANKP
                     PHALHGMACYSTWEIIDKTADSLTLRMPLASPWPWQGEVIQTFLLENDALVLQLEVHS
                     YADTFPASAGWHPWFAKKLTPQNTESLQVLFDADWQEEAGSDELPTGNRISPQAGPWD
                     DCFGFYNGVKVKLLWPGKLAMTMISSANSLVVFDKQPDATCINPLTQAPNAINLTPEL
                     VTPDRPLVIETRWQFTPES"
     gene            complement(4794..>5337)
                     /locus_tag="JN078_003842"
     CDS             complement(4794..>5337)
                     /locus_tag="JN078_003842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001291189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HAY9042868.1"
                     /translation="GIVYISSQLVLSRDIPLTGMLIASAIGIFSCPLVGWLSDRIGQK
                     SLYLSGAGFCVLFAFPFFLLLDSKSTLIIWCSMILGYNLGPTMMFAVQPTLFTRMFGT
                     KVRYTGLSFAYQFSAILGGLSPLIASSLLALGGGKPWYVALFLFAVSVLSFVCVWLIE
                     PTDEQETASYRYIREQSHEN"
BASE COUNT         1440 a         1346 c         1253 g         1298 t
ORIGIN      
        1 ctgataaatg aagaaaaacc gtattcatcg ccattaccac caccttacct atattactca
       61 ttaatgtatg tgcgaaaatt acgccggaaa atcattaaaa aaagcggatt tttgcatgtt
      121 gttttgtttt tgcgaggcgt tttccagaaa taataagagt gttgcagttg tttcatttat
      181 tactcaaaaa tggtttagtt atcgcccagg atgaattatg ggtgctatga atatattata
      241 ttcagagata tttatttgca taatctgaat ggtgtagccg aaaaacgtca gcatcctaac
      301 agcaccagga tttaaggtga aattaatctt tcatcacaga ccggtcagta ctgccaccaa
      361 ccggtcttta cttgctcatc gttataattt tgttggtaac agttcgggaa agttgttttt
      421 ctaaattaac aacagaataa ctttcttgtt taatgagatt aatattggca accattatag
      481 cctccttccc acggtttaag agcaaacata caacataatg attcataaca tacagagcag
      541 taaatgaatg atactgacaa tgatgccagc ccattatctt tgcataatgt ttgtgagcta
      601 tagattttaa aaatatttat gaggaaagta tggcaccaga ggaggttttg actatcaaaa
      661 atcgctcaaa cctgaactaa gatgatgagt taagcattat ctgcgataat tgccactcag
      721 ctctacaaat aatatttaaa tgctcctgaa cagtgatgta gcaagacacg tatggtgcca
      781 acgaagaata aaaatttata gagttcttat tcaatattac cggcatagac agggaatgat
      841 gtaaatgacc ggaatgaatg agagaggcag caccgcccct ctccataagc tactcttctt
      901 cgttcccgcc ctcttcatac gggccaaatg gcttcgcggg cagaacgata tacgtgcctt
      961 caaacactgc acccggcgtc tcgtcgccaa agatttcaac ttgcatctgc acccgtgctt
     1021 ttcgtccgcg cgccagacgg tcgagatcgc cgcttaaggc accaaggtcg gctaccgcat
     1081 gaggtttacc gctaatcggc ttgctgtagc ggatatgcgc atcggccaga ataatcgttc
     1141 cgccgaggtg gcgttcgcgc agcatcagcc agataagccc ccaaccggtg agcgttgcca
     1201 gcgagaataa actcccggca aacagcgtat ggtgcggatt ctgattaccg gtttccggca
     1261 tggtggtgat aaatttttgc ccggtatatt gctgaatgcg cacgcccatt ttttcactaa
     1321 gcgggatgtg ttcgtaccac gcctgttgca gctgcgcgca ccagtcgccg cgatgcaaaa
     1381 tatcatccag agtggcaaca ggtttaatca tcaaaaaatg gcgaatcggc gtggtggttg
     1441 gtgtggtgat ttctccctga ttaacaaacc ccagcttggc gaaaaactcc accgcgtctt
     1501 cacgggcgct acaggtcacg cgcttaacgc cttcctgacg cgccaccgac tccagggtca
     1561 tcgccatcaa cgtccccagc cctttgtcct gcacgtcggg atgaacggcc ataaagcgaa
     1621 tggacgcttc attgtcggca ttaatataca gtcggcctac cgccaccaga ttcccctgct
     1681 cgtcgacgac catctgatga tgcgccatcg catcccacgc gtcgcgttcc gaaccttttg
     1741 gttgatgcag gggcttacgc aacatttccc agcgaaactg atagtaacgc tctaactctt
     1801 cttctgtttg tggaacccga aggtgataca tagcgatact ctctcttgtt tcccgtgaca
     1861 accctggaag ctggctcata cctgcaacca gaatgtcacg gggccatcat tgaccagcga
     1921 tacctgcata tcggcagcga agcgtcctgt ttgcgtgttc atctcttgct ggcggcagcg
     1981 ttcgacgaaa tagtcatata acgcctctgc gcgatccggt gatgcgcctt tggagaaact
     2041 tgggcgcatc ccccgttcgg tatctgcggc gagggtaaac tgggaaacca ccagtacact
     2101 gccgcccgcc tgttgcacgt tgagattcat cttgccttcg gcatcgctaa agatgcggta
     2161 gccgagcaca cgctcgcaca gacggtttgc tttctgttcg tcgtcatcct tttcgacacc
     2221 caataacacc aaaagtcccg cgccaatttc gcccgtcact tctccctcca cggtgacgct
     2281 ggcacgggtt acgcgttgaa ttaatgcaat catggttcgt cgtcttcttc ttgttcagct
     2341 gcttgtttta gtttgcggta ttccccgaga gtgacagtaa tttccgcgcc aagcaagacg
     2401 atacaccatg tccagtagac ccaaacaaag agaatgggga tcaccgccag cacaccgtaa
     2461 atgagctgat atgacgggaa catggtgata taaagcgcga aacctttctt tcctgcttcg
     2521 aacaggagtg cggcgacaaa cgcgccgaca atcgcgtcgc ggttaggtac gcggatggta
     2581 ggaacaatgc tgtacagcaa ccagaaggag atccacgaca acagcaacgg aaaaatacgc
     2641 agcacgttgt cgatgacagt attgagatcg ctcgcccagc gcagggagag caaataggaa
     2701 ctgatcgcca gactggcccc tgccagcagc ggccccagcg ttaaaatcat ccagtacacg
     2761 gcgaacgagt aaatttttgg tcgcgctcgt ttactgcgcc agatggtatt caacgcgcta
     2821 tcgatggagt acatcaacaa taacgcggtg acgatcagcc cgcacgcccc aacggcggtc
     2881 atcttgttgg aattggcaac aaattgttcg atataccgct gaataacatc gccagtagca
     2941 ggcagaaagt tggcaaaaat aaagtgacgt aactgaatgc tgacgtcgga aaacatggga
     3001 aaagcggcga aaagcgcaaa aacaacggca accagcggca ctaatgagag caacgaccac
     3061 ataggcaagg ttacctgcca gggttgtcat gttgtcctca tcaatacgtt gccagagtag
     3121 ttttagccag gcccatagtg gacgggtacg gtgcctggct ttgtcctgaa tggtttttag
     3181 cataacacct tcgcgaaata gtccgggatg gtggttttat ctttcaccag aatactggta
     3241 atgcccagct gattggctcc ttctatatta tcggcgttat cgtcgaaaaa gaccgtatcg
     3301 ctgggtgaaa aaccttccgc ctgcaaaaca tgctggtaaa ttcgtgcttc aggtttgcgc
     3361 atccccagat cttgcgacag atagatatgg tcagcagcat cacgaatttc cgggtattct
     3421 tccggccaga aggtggtatg caggcggttg gtattggaaa gcaccaccac gcgatgcccc
     3481 tgctcacgca gtttatgcat gatggcgatc acttccgggc gcagcgcaac aaacaccgcc
     3541 tgccagccgt gagagaactg ctcgtagctt agcggtagag ccatctcatg acacagcgcc
     3601 tctgcgaacg cttcgtcgct aatttcccca cgctcatgct gatgaaacgc ctcccccata
     3661 tgaaaactct tcttaagcgt agccagtgga acacgcgtta aatcgctcca ggctcccagc
     3721 acacggttaa agtcgatatc gacaatcaca ttacctaaat caaagatata gagcattttt
     3781 gcctcctttc gcgccacaag aaattaactg tagcgggaaa ggatgggttt ggctatgtgg
     3841 caataagggt aatcttgtga tgctgattgc gaaaaagcag agtaatttca ctggcttttt
     3901 cgcaatagat gaatggttaa gattcaggtg taaattgcca acgagtttcg atgaccagcg
     3961 gcctatctgg tgtcaccaat tccggcgtta gatttattgc gttaggtgcc tgagtcagcg
     4021 ggttaataca ggtggcatcg ggctgtttat caaataccac cagactgttt gcagaagaga
     4081 tcatggtcat cgcgagttta ccaggccaca gtaacttaac cttcaccccg ttataaaaac
     4141 caaaacagtc atcccaggga ccggcttgag gagagatacg atttccagtt ggcagttcat
     4201 cactacccgc ttcttcttgc cagtccgcat caaaaagcac ctgcaacgat tctgtatttt
     4261 gcggagtcag ctttttcgca aaccacggat gccagccagc ggaggccggg aatgtatcgg
     4321 catatgaatg gacttccagt tgcaaaacca gcgcatcgtt ctccagcaaa aaagtctgaa
     4381 tcacttcccc ttgccagggc cacggtgaag ccaggggcat acgtaaagtc agggaatctg
     4441 ctgttttgtc gatgatttcc cacgttgagt aacaagccat accatgcaac gcatgtggtg
     4501 gtttattggc gggtaaagaa taacattgcc caccagcatt cagcgtcgca ttccccagtc
     4561 gccctgccca cggcaccatt gggaaacagc catactgaaa agctctgcgc tgcggctgcc
     4621 attggcgtaa tacttcagaa ccaaatgcct ttaacgaggt tatcctggca ccatcatgcg
     4681 gataaatctg caggtgaata ttgccttttt ccagcgtcac taactctcct acaggcccag
     4741 gccatggcgc gtcaaacgcc tgttgtagcg ccaggtaatg ctcgtttttt cgttcagttt
     4801 tcatgagatt gttccctgat gtagcggtaa gaagcggttt cttgttcatc ggtcggctca
     4861 atcagccaga cgcaaacaaa ggaaagaact gagacagcaa ataaaaacag agcgacatac
     4921 cacggttttc ctccccctag cgccagcaaa cttgaggcga taagggggct tagtccgcca
     4981 agaatcgcgg aaaattgata agcaaaagaa aggccggtat atcgtacttt ggtaccgaac
     5041 atgcgggtga aaagtgttgg ctgcacggca aacatcatcg tcggacctaa gttgtagccg
     5101 aggatcatac tgcaccagat gatgagcgta cttttgctat ccagtaataa gaagaaagga
     5161 aacgcgaaca ggacacaaaa tcctgctccc gacaaataca gacttttttg acctatacga
     5221 tctgataacc atccaaccaa tggacaactg aaaataccga tcgccgaggc aatcaacata
     5281 cccgtcaggg gaatatctcg cgacaatact aattggctgg aaatatagac aatacca
//
LOCUS       DADMJB010000215         5208 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.218, whole genome shotgun sequence.
ACCESSION   DADMJB010000215 DADMJB010000000
VERSION     DADMJB010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5208)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5208)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5208
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.218"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..117
                     /locus_tag="JN078_003843"
     CDS             <1..117
                     /locus_tag="JN078_003843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiG family protein"
                     /protein_id="HAY9042869.1"
                     /translation="DWDKEQLQDANSSWMVEDSFPRALREYNEMVDDYNSLR"
     gene            complement(167..1915)
                     /locus_tag="JN078_003844"
     CDS             complement(167..1915)
                     /locus_tag="JN078_003844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIA"
                     /protein_id="HAY9042870.1"
                     /translation="MLNERQLKIVDLLEQQPRTPGELAQQTGVSGRTILRDIDYLNFT
                     LNGKARISASGSAGYQLEIFERRSFFQLLQKHDNDYRLLALLLLNTFTPRAQLASALN
                     LPETWVAERLPRLKQRYERACCLASRPGLGHFIDETEEKRVILLANLLRKDPFLIPLA
                     GVTRDNLQHLSTACDNQHRWPLMQGDYLSSLILAIYALRNQLTDEWPQYPGDEIKQIV
                     EQSGMFLGDNAVRTLTGLIEKQHQQAQVISADHVLGLLQRVPDIASLNIIDTQLVENI
                     TGHLLRCLAAPVWIAEHRQSSMNNLKAAWPAAFDMSLHFITLLREQLDIPLFDNDLIG
                     LYFACALERHQNERQPIILLSDQNAIATINQLAIERDVLNCRVIIARSLSELVAIREE
                     IEPLLIINNSHYLLEDAVNNYITVKNIITAAGIEQIKHFLATAFIRQQPERFFSAPGS
                     FHYSNVRGESWQHITRQICAQLVAQHHITADEAQRIIAREGEGENLIVNRLAIPHCWS
                     EQERRFRGFFITLAQPVEVNNEVINHVLIACAAADARHELKIFSYLASILCQHPAEVI
                     AGLTGYEAFMELLHKG"
     gene            complement(1915..2985)
                     /locus_tag="JN078_003845"
     CDS             complement(1915..2985)
                     /locus_tag="JN078_003845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709702.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HAY9042871.1"
                     /translation="MNIELLQQLCEASAVSGDEQEVRDILINTLEPCVNEITFDGLGS
                     FVARKGNKGPKVAVVGHMDEVGFMVTHIDESGFLRFTTIGGWWNQSMLNHRVTIRTHK
                     GVKIPGVIGSVAPHALTEKQRQRPLSFDEMFIDIGANSRDEVEKRGVAMGDFISPEAN
                     FACWGEDKVVGKALDNRIGCAMMAELLQTVNNPEITLYGVGSVEEEVGLRGAQTSAEH
                     IKPDVVIVLDTAVAGDVPGIDNIKYPLKLGQGPGLMLFDKRYFPNQKLVAALKSCAAH
                     NDLPLQFSTMKTGATDGGRYNVMGGGRPVVALCLPTRYLHANSGMISKADYDALLTLI
                     RDFLTTLTAEKVNAFSQFRQMD"
     gene            complement(2975..4426)
                     /locus_tag="JN078_003846"
     CDS             complement(2975..4426)
                     /locus_tag="JN078_003846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose-like transporter subunit IIBC"
                     /protein_id="HAY9042872.1"
                     /translation="MESSLRIVAITNCPAGIAHTYMVAEALEQKARSLGHTIKVETQG
                     SSGVENRLSSEEIAAADYVILATGRGLSGDDRARFTGKKVYEIAISQALKNIDQIFSE
                     LPTNSQLFAADSGVKLGKQEMQSGSVMSHLMAGVSAALPFVIGGGILVALANMLVQFG
                     LPYTDMSKGAPSFTWVVESIGYLGFTFMIPIMGAYIASSIADKPAFAPAFLVCYLAND
                     KALLGTQSGAGFLGAVVLGLAIGYFVFWFRKVRLGKALQPLLGSMLIPFVTLLVFGVL
                     TYYVIGPVMSDLMGGLLHFLNTIPPSMKFAAAFLVGAMLAFDMGGPINKTAWFFCFSL
                     LEKHIYDWYAIVGVVALMPPVAAGLATFIAPKLFTRQEKEAASSAIVVGATVATEPAI
                     PYALAAPLPMITANTLAGGITGVLVIAFGIKRLAPGLGIFDPLIGLMSPVGSFYLVLA
                     IGLALNISFIIVLKGLWLRRKAKAAQQELVHEH"
     gene            complement(4437..4883)
                     /locus_tag="JN078_003847"
     CDS             complement(4437..4883)
                     /locus_tag="JN078_003847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIA"
                     /protein_id="HAY9042873.1"
                     /translation="MAALTASCIDLNIQGNGAYSVLKQLATIALQNGFITDSHQFLQT
                     LLLREKMHSTGFGSGVAVPHGKSACVKQPFVLFARKAQAIDWKASDGEDVNCWICLGV
                     PQSGEEDQVKIIGTLCRKIIHKEFIHQLQQGDTDQVLALLNQTLSS"
BASE COUNT         1318 a         1342 c         1316 g         1232 t
ORIGIN      
        1 gactgggata aagagcaact tcaggacgca aactcaagct ggatggtcga agactctttc
       61 ccgagagcat tacgcgagta caacgaaatg gttgatgact ataatagcct gcgttaaacg
      121 tttttgatga taaatgcagt gtcggatgcg gcgcatctga cacagttcac cccttgtgaa
      181 gtaactccat aaatgcctca tatcctgtta acccggcaat aacctctgcc ggatgctgac
      241 acaatatgct tgccagatag ctaaatattt ttagctcatg acgcgcatcg gcggcggcgc
      301 aggcgatcaa gacatggtta atgacttcgt tattcacctc aactggttgg gcgagggtaa
      361 taaaaaatcc acgaaaacgt cgctcctgtt cgctccagca atgtgggatg gcgaggcgat
      421 taacaatcag gttttcacct tcgccttcgc gggcgatgat gcgttgtgct tcatcggcgg
      481 taatatggtg ttgtgcgact aattgcgcac aaatttgccg ggtaatatgt tgccagcttt
      541 caccgcgtac attcgaataa tgaaaacttc cgggggcaga gaaaaaacgc tccggttgct
      601 ggcgaataaa tgccgtcgcc agaaaatgtt ttatttgttc gataccggca gccgtaatga
      661 tattttttac ggtgatgtaa ttatttaccg cgtcttccag taaataatgg ctattgttaa
      721 tgatcaataa cggctcaatc tcttcgcgaa tggcaacaag ttcgcttaag ctacgggcaa
      781 taattacccg acaatttaaa acatcgcgct caatggcgag ctgattaata gtggcaatcg
      841 cgttctggtc cgagagcaaa atgatcggct ggcgttcgtt ttgatgccgc tccagcgcac
      901 aggcaaaata caaaccgatc agatcgttgt cgaaaagggg aatatcgagc tgttcacgca
      961 gtagcgtaat aaagtgcaga ctcatatcaa aggccgcagg ccaggctgct ttcaggttat
     1021 tcatgctact ttggcggtgc tcagcaatcc acaccggtgc ggcaaggcaa cgtaataaat
     1081 gcccggtaat attctcaacc aactgcgtat caataatatt caatgacgcg atgtctggca
     1141 ccctttgcag caaccccagc acatgatcgg ctgaaattac ctgcgcttgc tgatgctgtt
     1201 tctctatcaa acctgtcagg gttcttacag cgttatcacc aagaaacatg ccgctttgtt
     1261 caacgatttg ttttatctcg tcaccgggat attgcggcca ctcatcggtc agttgattac
     1321 gcagggcgta aatcgccaga atcaggctgg agagataatc accctgcatg agcggccagc
     1381 ggtgttggtt gtcgcaggcc gtggataaat gctgaaggtt gtctcgtgtt acgcccgcca
     1441 gcggaattaa aaacggatct ttgcgcagca agttcgccag caagataacg cgcttctctt
     1501 ctgtctcatc aatgaaatgg cccaaaccgg ggcggctggc caggcaacaa gcgcgttcat
     1561 aacgctgttt taaccggggc agacgctctg cgacccacgt ttctggcaaa ttaagcgccg
     1621 aggcgagttg cgcacgggga gtaaaggtat tcagtaataa cagtgccagc agccgatagt
     1681 cgttatcgtg cttttgcagc aactgaaaaa agctgcggcg ctcgaagatt tccagctgat
     1741 agcccgcact accactggcg gaaatgcggg ctttgccgtt aagggtaaag ttgagatagt
     1801 caatatcacg caggatggtc ctgcctgaaa cgccagtctg ttgcgccagc tcaccaggcg
     1861 tgcgcggctg ttgctccagc agatcgacaa tctttaactg gcgttcgttt agcattaatc
     1921 catctgacgg aactggctaa acgcgttgac tttctccgcg gttaaggtgg tcagaaaatc
     1981 ccgtatcaac gtgagcagag catcgtaatc ggcttttgaa atcataccgc tgttagcgtg
     2041 cagatagcgg gttggcaggc acagcgcaac aaccggacgc ccgccgccca tcacgttgta
     2101 gcgcccgcca tccgtcgcac cggttttcat ggtggaaaat tgcagcggta aatcgttatg
     2161 tgcggcacag ctttttaacg ctgctaccag tttctggttg gggaagtagc gcttgtcaaa
     2221 cagcatcagc cccggcccct ggcccagttt cagcgggtat ttaatgttat caatgcccgg
     2281 aacatcgcct gcgacagcgg tatccagcac gatcactaca tccggtttaa tgtgttccgc
     2341 cgaggtttgt gccccgcgta gcccaacttc ttcttccacg ctgccgacgc catacagcgt
     2401 aatttcggga ttattcaccg tctgcaatag ttcagccatc attgcgcagc cgatgcggtt
     2461 atccagcgcc ttgccgacca ctttatcttc gccccagcag gcaaaattgg cttccgggct
     2521 aataaaatcg cccatcgcca caccgcgttt ttccacctca tcgcgactgt ttgcgccaat
     2581 atcaatgaac atctcatcaa atgacagcgg ccgttgcctt tgcttttccg ttaacgcatg
     2641 aggcgcgacg gaaccaatca caccagggat tttcactccc ttgtgtgtgc gtatggttac
     2701 ccggtggttg agcatcgact gattccacca gccaccaatg gtggtgaaac gcagaaaacc
     2761 gctctcgtcg atgtgggtga ccataaagcc gacttcatcc atatgcccga caacggcaac
     2821 ttttggacct ttattcccct tacgggcaac aaagctgccc agaccatcaa aggtgatctc
     2881 attaacgcaa ggttccagcg tgtttatcag aatgtcgcga acttcctgtt catcgccgct
     2941 gacggcgctg gcttcgcaca actgttgcag taactcaatg ttcatggaca agctcctgtt
     3001 gcgcggcttt cgctttgcgg cgtaaccaca atcctttcag gacgataatg aatgaaatgt
     3061 tcagcgcgag gccaatcgcc agcaccagat aaaacgaacc caccggcgac atcaggccga
     3121 tcagcgggtc aaagataccc aaaccaggtg ccagacgttt gattccgaaa gcgatcacca
     3181 gcacgccggt aatgccaccc gccagcgtat tggcggtaat catcggcaac ggagctgcca
     3241 gagcgtaagg tatagccggt tcggttgcga ctgtggcacc gaccacaatg gcactactgg
     3301 cagcctcttt ttcctgtcgg gtaaacagtt tgggcgcaat gaacgtcgca agacccgccg
     3361 caacgggcgg catcaacgcg acaacgccga cgatggcgta ccagtcataa atgtgttttt
     3421 ccagcagtga gaagcagaag aaccaggcgg ttttattgat ggggccgccc atatcgaacg
     3481 ccagcatcgc accgaccaga aacgctgctg caaacttcat tgatggagga atggtattca
     3541 ggaagtggag cagcccgccc atgaggtcgg acatcaccgg cccgataacg tagtaagtga
     3601 gcacgccgaa aaccagcaga gtaacgaacg ggatcagcat tgaaccgagc agcggttgta
     3661 atgctttgcc aaggcgcact ttgcggaacc agaagacgaa atagccaatc gccagcccca
     3721 gcaccaccgc gccgaggaat cccgcacccg actgggtgcc gagcagcgct ttgtcgttcg
     3781 ccagatagca aaccagaaac gccggagcga aagccggttt atcggcaatc gacgaggcaa
     3841 tataagcgcc catgatgggg atcataaagg tgaagccaag gtaaccgatg gattcaacta
     3901 cccaggtaaa cgacggcgcg cctttcgaca tatcggtata cggcaaaccg aactgcacca
     3961 gcatgttggc aagcgccacc aggataccac cgccgatgac aaacggcagc gccgcagaga
     4021 cgcccgccat caggtggctc atcacgctgc cgctttgcat ttcctgtttg ccaagcttca
     4081 cgccactatc tgcggcaaaa agctgcgagt ttgtcggtaa ttcgctgaaa atctggtcga
     4141 tatttttcaa cgcctgggag atggcaatct cataaacttt cttcccggta aaccgcgcgc
     4201 gatcatcacc gctcaggcca cgcccggtag cgagaatgac gtaatcggca gcggcaatct
     4261 cttcgctgga taagcggttt tcaacgccac tggacccttg agtttccact tttatggtat
     4321 ggccgagaga acgggctttc tgttccaggg cttccgccac catgtaggtg tgagcgatcc
     4381 cggcggggca gttggtgatc gcgacaatac gtaaggatga ctccatcgcc acttccttat
     4441 gagctgaggg tttgatttaa caaggcaagc acttggtcgg tatcgccctg ttgcagttga
     4501 tgaataaatt ccttgtgaat aattttgcga cacagtgtgc cgatgatttt gacctgatcc
     4561 tcttcgccgc tttgcggcac gccgaggcag atccagcaat tgacgtcttc gccatcgctg
     4621 gctttccagt caatagcctg cgctttgcgg gcgaataata cgaacggttg tttaacgcag
     4681 gcgcttttac cgtgcggcac ggcgacaccg gaaccaaatc cagtagagtg cattttttcg
     4741 cgcagcagca gggtttgcag gaactggtgt gagtcggtga taaaaccgtt ttgtaacgct
     4801 attgtcgcca actgcttcag aacggaataa gcgccattgc cctgaatatt caggtcaata
     4861 cagcttgcag taagagctgc cattaatcgg actccataaa atatatttta atcaattgta
     4921 atggtggagc gattaagtga tgagaggcga tatgtcggta aacaatgaca atttgagaca
     4981 gagtgaaagg tcagatttgc ggagtaatgc acataatggt tatttaaata aaccacatga
     5041 atcattaatg ggttattcat tatttttgtg atttactcac aatgtatcag ggaaatataa
     5101 cttaccggga gatgtaatat gtttaatttt tcaaatcgaa atttaaaata ttgtgccgga
     5161 ggcatctccg gcacattggg caattacggc aggtaaaaca cttcttgc
//
LOCUS       DADMJB010000216         4963 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.219, whole genome shotgun sequence.
ACCESSION   DADMJB010000216 DADMJB010000000
VERSION     DADMJB010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4963)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4963)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4963
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.219"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            390..1364
                     /gene="hemB"
                     /locus_tag="JN078_003848"
     CDS             390..1364
                     /gene="hemB"
                     /locus_tag="JN078_003848"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308450.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HAY9042874.1"
                     /translation="MTDLIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDY
                     KAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDGLVARM
                     SRICKQTVPEMIVMSDTCFCEYTSHGHCGVLCEHGVDNDATLENLGKQAVVAAAAGAD
                     FIAPSAAMDGQVQAIRQALDAAGFKDTAIMSYSTKFASSFYGPFREAAGSALKGDRKS
                     YQMNPMNRREAIRESLLDEAQGADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEY
                     AMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYFALDLAEKKILR"
     gene            complement(1470..2321)
                     /gene="tauD"
                     /locus_tag="JN078_003849"
     CDS             complement(1470..2321)
                     /gene="tauD"
                     /locus_tag="JN078_003849"
                     /EC_number="1.14.11.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine dioxygenase"
                     /protein_id="HAY9042875.1"
                     /translation="MSERLSITPLGPYIGAQISGADLTRPLSDNQFEQLYHAVLRHQV
                     VFLRDQAITPQQQRALAQRFGELHIHPVYPHAEGVDEIIVLDTHNDNPPDNDNWHTDV
                     TFIETPPAGAILAAKELPSTGGDTLWTSGITAYEALSVPFRQLLSGLRAEHDFRKSFP
                     EYKYRKTEEEHQRWREAVAKNPPLLHPVVRTHPVSGKQALFVNEGFTTRIVDVSEKES
                     EALLGFLFAHITKPEFQVRWRWQPNDIAIWDNCVTQHYANADYLPQRRIMHRVTILGD
                     KPFYRAG"
     gene            complement(2336..3145)
                     /gene="tauC"
                     /locus_tag="JN078_003850"
     CDS             complement(2336..3145)
                     /gene="tauC"
                     /locus_tag="JN078_003850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine ABC transporter permease TauC"
                     /protein_id="HAY9042876.1"
                     /translation="MSVLINEKLHSRRLKWRWPLSRQVTLSIGTLAVLLTVWWTVAAL
                     QLISPLFLPPPQQVLAKLLTIAGPQGFMDATLWQHLAASLTRIVLALLAAVVIGIPVG
                     IAMGLSPTVRGILDPVIELYRPVSPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMS
                     ALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAE
                     LIAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRLTP"
     gene            complement(3142..3909)
                     /gene="tauB"
                     /locus_tag="JN078_003851"
     CDS             complement(3142..3909)
                     /gene="tauB"
                     /locus_tag="JN078_003851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine ABC transporter ATP-binding subunit"
                     /protein_id="HAY9042877.1"
                     /translation="MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLL
                     NLIAGFVPYQHGSIQLAGKRIEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGIEK
                     MQRLEIAHQVLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD
                     AFTRDQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSSGPGRVLERLPLNFA
                     RRFVAGESSRSIKSDPQFIAMREYVLSRVFEQREAFS"
     gene            complement(3922..4884)
                     /gene="tauA"
                     /locus_tag="JN078_003852"
     CDS             complement(3922..4884)
                     /gene="tauA"
                     /locus_tag="JN078_003852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414899.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY9042878.1"
                     /translation="MAISSRNTLLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQAGNT
                     FAKESGASVDWRKFDSGASIVRALASGDVQIGNLGSSPLAVAASQQVPIEVFLLASKL
                     GNSEALVVKKTISKPEDLIGKRIAVPFISTTHYSLLAALKHWGIKLGQVEIVNLQPPA
                     IIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHP
                     EVVKAFAKSAIDAQQPYIANPDAWLKQPENISKLARLSGVPEGDVPGLVKGNTYLTPQ
                     QQTAELTGPVNKVIIDTAQFLKEQGKVPAVANDYSQYVTSRFVQ"
BASE COUNT         1182 a         1417 c         1245 g         1119 t
ORIGIN      
        1 tggacatata taatttatgg agaaaaacac gcatcaaatt gataaaagga cgatatttca
       61 acatgttgca gataatgtta tttttgatac atacgcgtta taaatatcaa aaacacaaac
      121 cagataaata tcttatcaat atacaacaaa gtttgaatta ttcaatttat agcagcacaa
      181 ccaaacgcaa aaaaaaataa taaccaagag ctataaataa agattaaaaa tattttcagt
      241 gaatatgaac ttattgctat ttctattaca aagatgtcct ggtctctctt tcattctctt
      301 cttgtcaaca tcacgacaac tttcgtaaaa cactcctgcc ccgcttcagg tatactgtgc
      361 accttaattc cacaaacatc aggcagacca tgacagactt aatccaacgc cctcgtcgcc
      421 tgcgcaaatc tcctgcgctg cgcgctatgt ttgaagagac aacacttagc cttaacgacc
      481 tggtgttgcc gatctttgtt gaagaagaaa ttgacgacta caaagccgtt gaagccatgc
      541 caggcgtgat gcgcattcca gagaaacatc tggcacgcga aattgaacgc atcgccaacg
      601 ccggtattcg ttccgtgatg actttcggca tctctcacca taccgatgaa accggcagcg
      661 acgcctggcg ggaagatgga ctggtggcgc gtatgtcgcg catctgcaag cagactgtgc
      721 cagaaatgat cgtcatgtca gacacttgtt tctgtgaata cacttctcac ggtcactgcg
      781 gtgtgctgtg cgagcatggc gtcgacaacg acgcgactct ggaaaattta ggcaagcaag
      841 ccgtggttgc agctgctgca ggcgcagact tcatcgcccc ttccgccgcg atggacggcc
      901 aggtacaggc gattcgtcag gcgctggacg ctgcaggctt taaagatacg gcgattatgt
      961 cgtattcgac caagttcgcc tcttcctttt atggcccgtt ccgtgaagct gccggaagcg
     1021 cattaaaagg cgaccgcaaa agctatcaga tgaaccctat gaaccgtcgc gaggcgattc
     1081 gtgagtcact gctggatgaa gcccagggcg cagactgcct gatggttaaa cctgctggag
     1141 cgtacctcga catcgtgcgt gagctgcgtg aacgtactga attgccgatt ggcgcgtatc
     1201 aggtgagcgg tgagtacgcg atgattaagt tcgccgcgct ggcgggtgct atagatgaag
     1261 agaaagtcgt gctcgaaagc ttaggttcaa ttaagcgtgc gggtgcggat ctgattttca
     1321 gctactttgc gctggatttg gctgagaaga agattctgcg ttaatttttt tcctctcaga
     1381 aagggggagt taacctgttg aaagtacggt gaacgccccc tcaccctaac cctctcccca
     1441 agggggcgag ggaaccgtcc gcactcgtat caccccgccc gataaaacgg tttatcccca
     1501 agaatcgtca cccgatgcat aatccgccgc tgtggcaggt aatcggcatt ggcatagtgc
     1561 tgagtcacgc agttatccca aatcgcaata tcattcggtt gccagcgcca acgcacctga
     1621 aactccggtt tagtgatatg ggcgaataaa aagcctaaca aggcttcgct ctctttctcg
     1681 ctgacatcga caattcgcgt agtaaagcct tcattcacaa acagcgcctg tttaccgctc
     1741 accggatgcg ttcgcaccac cggatgtagc aacggaggat ttttcgcgac cgcctcgcgc
     1801 cagcgttgat gttcctcctc ggttttgcgg tatttgtatt ccgggaacga tttacggaaa
     1861 tcatgctccg cacgcagccc gctcagcagc tggcggaagg gaacagagag cgcctcatag
     1921 gccgtaatac cgctggtcca gagcgtatca ccgccggtcg aaggtaattc tttagctgcc
     1981 agaatcgccc ctgcgggtgg cgtttcaata aatgtcacat cggtatgcca gttgtcgtta
     2041 tctggcggat tatcgttatg ggtatccagc acgatgatct cgtcaacccc ttcggcatga
     2101 gggtaaacag ggtgaatatg cagttcgcca aaacgctggg ccagcgcgcg ttgctgctgc
     2161 ggcgtaatgg cttgatcgcg cagaaacacc acctgatggc gcagcaccgc atggtaaagc
     2221 tgttcaaact gattatcgct taacgggcgc gtcaggtcgg cacccgaaat ttgtgcgccg
     2281 atatacggcc ccagcggggt aatgctcaga cgttcactca ttgtacttct ccatgctagg
     2341 gcgtcagacg gcgctgtaac gcgcgcaaac ccagttctaa aagaaaggcg ataatcgcaa
     2401 tcaccgcgat tcccgccagc accacgtcag tcgcgagaaa ttcacccgct gactgaacca
     2461 taaatcctaa accgcgcgtc gcggcaatca gctccgccgc taccagcgta gaccagccca
     2521 cacccagacc aatgcgtaat ccggtgagga tttccggcag cgcgccgggc aaaatgacaa
     2581 accacagcac ctgcgcacgg ctggcaccca gcgactgggc ggcacgaatg cgaacctgct
     2641 gcgcgctttt cacccccgcc agcgccgaca tcgccaccgg tgcaaaaatc gctaaataga
     2701 tcagtaagat cttcgaggtt tcaccaatac caaaccagat caccatcagc ggcaaataag
     2761 ccagcggcga caccggacga taaagttcga ttaccggatc cagaatgccg cgcaccgtcg
     2821 ggcttagccc catggcgatc ccgaccggaa taccgatcac caccgccgcg agtagcgcca
     2881 gcacaatgcg cgtcaggctg gctgccagat gctgccacag cgtggcgtcc ataaatccct
     2941 gcggtccggc aatggtgagc agttttgcca gtacttgttg cggcggcggc aaaaacagcg
     3001 ggctaatcag ttgcagcgcc gccaccgtcc accatacagt gagtaaaacc gctaacgtgc
     3061 caatgcttaa ggtcacctga cgcgagagcg gccagcgcca tttcagccgc cgcgaatgca
     3121 gtttttcatt aatgagcaca ctcatgagaa cgcctcccgt tgctcaaata cgcggcttaa
     3181 aacatattcg cgcatggcga tgaattgtgg atcggacttg atgctgcggc tcgactctcc
     3241 cgcaacaaag cggcgagcaa agttgagcgg cagccgctcc agcacacggc cagggccgga
     3301 tgaaagcaga accagttcag tcgccataaa caccgcttct tctatatcgt gggtaatcaa
     3361 cagcacctgc ttgcccgtct cctgccagag tttcagcagc agagtttgca tctggtcgcg
     3421 ggtgaaggcg tccagcgcac caaacggttc gtcgagtaat aacagctggg gattcgccgc
     3481 cagcgcgcgg gcaatcccca cccgctgacg ttgaccaccg gaaagctgcc agatatagcg
     3541 tttttctgcg ccttccagcc ccactttttt cagcacctgg tgcgcgattt ccagtcgctg
     3601 cattttctct atacctgcca attgcaggcc gaacgccacg ttgtcctgta cattgcgcca
     3661 cggtagcagc ccttcattct gaaaaaccac cccgcgctct gctcccggtc cctcaatacg
     3721 cttacccgcc agttgaatgc tgccatgctg ataaggcaca aaaccggcaa tcagattcag
     3781 caacgtggtt ttaccgcagc cggacggccc cagcaccacc agtagctcgc cgctttccag
     3841 cgtcaggttg atatcttcca gtgccggttt gccgccataa tcggcataga gatgagagat
     3901 ttgcagcatc tgcgcctcct tttattgcac gaagcgcgag gtaacgtact ggctgtaatc
     3961 attcgctaca gccgggacct tgccctgctc tttcaaaaac tgcgcggtgt cgatgattac
     4021 tttgttcacc ggtccggtca gttctgccgt ttgttgctgc ggcgtcagat aggtattccc
     4081 cttaaccagc cccggaacgt caccttccgg cacgccgctt aaacgcgcca gtttgctgat
     4141 gttttccggc tgtttcagcc acgcgtctgg gttagcaatg tacggttgct gagcatcgat
     4201 ggcgctttta gcgaacgctt tcacgacctc aggatgtttc tcggcaaaat ctttgcgcac
     4261 cacccagacg tccagcgttg gcgcacccca ctgcccgacc tgttcagaat cggtcaacac
     4321 cttgccgtct ttttccaggg cgttaaccgc cggtgcccag acataagcac catcaatatc
     4381 accccgctgc catgcggcga taatcgcggg cggctgcagg ttcacaatct ccacttgccc
     4441 tagtttaatc ccccagtgtt tcagcgccgc cagcaggctg tagtgggtgg tggagataaa
     4501 cggtacggca atgcgtttgc caatcaaatc ttcgggtttg ctgatagttt tctttaccac
     4561 cagcgcttcg gagttaccca gttttgacgc cagcaagaag acttcaatcg gcacctgttg
     4621 gctggctgca accgctaatg ggctggaacc gaggttgccg atttgcacgt cgccagaagc
     4681 cagcgcccgc acgatgctgg ctccgctgtc aaacttacgc cagtccacgc tcgccccgct
     4741 ctctttagca aaggtgttgc cggcctgagc cactttcgcc ggttcggctg aggtttgata
     4801 cgccacggtg acgttcaccg cctgtgcctg aaaagcgatg aatgccagtg cggcaagaag
     4861 tgtgttacgc gatgaaattg ccatgattgt ctgctcccca gtcttgttat gggagcagta
     4921 ttcaggaata aaaacattca ttaaaagaat tagtcgttat cgc
//
LOCUS       DADMJB010000217         4960 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.220, whole genome shotgun sequence.
ACCESSION   DADMJB010000217 DADMJB010000000
VERSION     DADMJB010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4960)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4960)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4960
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.220"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..247)
                     /locus_tag="JN078_003853"
     CDS             complement(<1..247)
                     /locus_tag="JN078_003853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3029 family protein"
                     /protein_id="HAY9042879.1"
                     /translation="MPTSHENALQQRCQQIVTSPVLSPEQKRHFLALEAENNLPYPQL
                     PAEARRALDEGVICDMFEGHAPYKPRYVLPDYARFLAN"
     gene            505..1284
                     /gene="deoC"
                     /locus_tag="JN078_003854"
     CDS             505..1284
                     /gene="deoC"
                     /locus_tag="JN078_003854"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005097947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HAY9042880.1"
                     /translation="MTDLKASSLRALKLMDLTTLNDDDTDEKVIALCHQTKTPVGNTA
                     AICIYPRFIPIARKTLKEQGTPEIRIATVTNFPHGNDDIEIALAETRAAIAYGADEVD
                     VVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIK
                     AGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAI
                     ADELFGADWADARHYRFGASSLLASLLKALGHGDGKSASSY"
     gene            1411..2733
                     /gene="deoA"
                     /locus_tag="JN078_003855"
     CDS             1411..2733
                     /gene="deoA"
                     /locus_tag="JN078_003855"
                     /EC_number="2.4.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313368.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine phosphorylase"
                     /protein_id="HAY9042881.1"
                     /translation="MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAM
                     TIFFHDMTMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGPMV
                     AACGGYIPMISGRGLGHTGGTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSL
                     APADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSE
                     ALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVT
                     MALCVEMLISGKLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPTDFVENYAKYL
                     PTAMLTKAVYADTEGFVSEMDARALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQ
                     VDGQRPLAVIHAKDENSWQEAAKAVKAAIKLADKAPESTPTVYRRISE"
     gene            2785..4008
                     /gene="deoB"
                     /locus_tag="JN078_003856"
     CDS             2785..4008
                     /gene="deoB"
                     /locus_tag="JN078_003856"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HAY9042882.1"
                     /translation="MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEAD
                     NGRKGPLNLPNLTRLGLAKAHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGKDTPSGH
                     WEIAGVPVLFEWGYFSDHENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEH
                     MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIG
                     DKAGNFQRTGNRHDLAVEPPAPTVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKAT
                     GLDALFDATIKEMKEAGDNTIVFTNFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMS
                     LLRDDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTLA
                     KYFGTSDMEYGKAMF"
     gene            4088..4807
                     /gene="deoD"
                     /locus_tag="JN078_003857"
     CDS             4088..4807
                     /gene="deoD"
                     /locus_tag="JN078_003857"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HAY9042883.1"
                     /translation="MATPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVR
                     GMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLR
                     DVVIGMGACTDSKVNRIRFKDHDFAAIADFDMVRNAVDAAKALGIDARVGNLFSADLF
                     YSPDGEMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAER
                     QTTFNDMIKIALESVLLGDKE"
BASE COUNT         1194 a         1262 c         1364 g         1140 t
ORIGIN      
        1 cgttcgccag aaaacgggcg taatcgggta agacatagcg cggtttgtac ggcgcatgac
       61 cttcaaacat atcgcagatt acaccctcat ccagcgcgcg gcgggcttcg gcaggaagct
      121 gcggataagg cagattgttt tctgcttcca gagccagaaa atggcgcttc tgctccgggc
      181 taagcactgg gctggtgaca atttgctggc aacgttgttg cagtgcattt tcatgagaag
      241 tgggcatctt cttttccttt tatgccgaag gtgatgcgcc attgtaagaa gtttcgtgat
      301 gttcactttg atcctgatgc gtttgccacc actgacgcat tcatttgaaa gtgaattatt
      361 tgaaccagat cgcattacag tgatgcaaac ttgtaagtag attaccttaa ttgtgatgta
      421 tatcgaagtg tgttgcggag tagatgttag aatactaaca aactcgcaag gtgaatttta
      481 ttggcgacaa gccaggagaa tgaaatgact gatctgaaag caagcagcct gcgtgcactg
      541 aaattgatgg acctgaccac cctgaatgac gacgacaccg acgagaaagt aattgctctg
      601 tgtcatcaga ccaaaactcc ggtcggcaat accgccgcta tctgtatcta tcctcgcttt
      661 atcccgattg ctcgcaaaac gctgaaagag cagggcaccc cggaaatccg aatcgctacg
      721 gtaaccaact tcccacacgg taacgatgac atcgaaatcg cgctggcaga aacccgtgcg
      781 gcaatcgcct acggtgctga tgaagttgac gttgtgttcc cgtaccgcgc gctgatggcg
      841 ggtaacgagc aggttggttt tgacctggtg aaagcctgta aagaggcttg cgcggcagcg
      901 aatgtactgc tgaaagtgat catcgaaacc ggcgaactga aagacgaagc gctgatccgt
      961 aaagcgtctg aaatctccat caaagcgggt gctgacttca tcaaaacctc taccggtaaa
     1021 gtggcagtga acgcgacgcc ggaaagcgcg cgcatcatga tggaagtgat ccgtgatatg
     1081 ggcgtagaaa aaaccgttgg tttcaaaccg gcgggcggcg tgcgtactgc ggaagatgcg
     1141 cagaaatatc tcgccatcgc agatgaactg ttcggtgctg actgggcaga tgcgcgtcac
     1201 taccgctttg gtgcttccag cctgctggca agcctgttga aagcgctggg ccacggtgac
     1261 ggtaagagcg ccagcagcta ctaagcaaga tgctttacgc ctgatgcgct gcgcttatca
     1321 ggcctacgag acgtatctac ccgtaggccg gataaggcgt agacgcatcc ggcaaaagcc
     1381 gcctcatact cttttcctcg ggaggttacc ttgtttctcg cacaagaaat tattcgtaaa
     1441 aaacgtgatg gtcatgcgct gagcgatgaa gaaattcgtt tctttatcaa cggcattcgc
     1501 gacaacacta tctccgaagg gcagattgcc gccctcgcga tgaccatttt cttccacgat
     1561 atgacaatgc ctgagcgtgt ctcgctgacc atggcgatgc gagattcagg aaccgttctc
     1621 gactggaaaa gcctgcatct gaatggcccg attgttgata aacattccac cggcggcgtc
     1681 ggcgatgtca cttcgctgat gttggggccg atggtcgcag cctgcggcgg ctatattccg
     1741 atgatctccg gtcgcggcct cggtcatact ggcggtacgc tcgacaaact ggaatccatc
     1801 cctggcttcg acattttccc ggatgacaac cgtttccgcg aaattattaa agacgtcggc
     1861 gtggcgatta tcggtcagac cagctcactg gctccggcgg ataaacgttt ctacgcgacc
     1921 cgtgatatta ccgcaaccgt ggactccatc ccgctgatca ctgcctcgat cctggcgaag
     1981 aaactggcgg aaggtctgga tgcgctggtg atggacgtga aagtgggtag cggcgcgttt
     2041 atgccgacct acgaactctc tgaagccctt gccgaagcga ttgttggcgt ggctaacggc
     2101 gctggcgtgc gcaccaccgc gctgctcacc gacatgaatc aggtactggc ctccagtgca
     2161 ggtaacgcgg ttgaagttcg tgaagcggtg cagttcctga cgggtgaata tcgtaacccg
     2221 cgtctgtttg atgtcacgat ggcgctgtgc gtggagatgc tgatctccgg caaactggcg
     2281 aaagatgacg ccgaagcgcg cgcgaaattg caggcggtgc tggacaacgg taaagcggca
     2341 gaagtctttg gtcgtatggt agcggcacaa aaaggcccga ccgacttcgt tgagaactac
     2401 gcgaagtatc tgccgacagc gatgctgacg aaagcagtct atgctgatac cgaaggtttt
     2461 gtcagtgaaa tggatgcccg cgcgctgggg atggcagtgg ttgcaatggg cggcggtcgt
     2521 cgtcaggcat ctgacaccat cgattacagc gtcggcttta ctgatatggc gcgtctgggc
     2581 gaccaagtag acggtcagcg tccgctggcg gttatccacg cgaaagacga aaacagctgg
     2641 caggaagcgg cgaaagcggt gaaagcggca attaaacttg ccgataaagc accggaaagc
     2701 acaccaactg tctatcgccg tatcagcgaa taacggtata ctgatctgat catttaaatt
     2761 tgaagcactg agtacggaga acatatgaaa cgtgcattta ttatggtgct ggactcattc
     2821 ggcatcggcg ctacagaaga tgcagaacgc tttggtgacg tcggggctga caccctgggt
     2881 catatcgcag aagcttgtgc caaaggcgaa gctgataacg gtcgtaaagg cccgctcaat
     2941 ctgccaaatc tgacccgtct ggggctggcg aaagcacacg aaggttctac cggtttcatt
     3001 ccggcgggaa tggacggcaa cgctgaagtt atcggcgcgt acgcatgggc gcacgaaatg
     3061 tcatccggta aagatacccc gtctggtcac tgggaaatcg ccggtgtccc ggttctgttt
     3121 gagtggggat acttctccga tcacgaaaac agcttcccgc aagagctgct ggataaactg
     3181 gtcgaacgcg ctaatctgcc gggttacctc ggtaactgcc actcttccgg tacggtcatt
     3241 ctggatcagc tgggcgaaga gcacatgaaa accggcaagc cgattttcta tacctccgct
     3301 gactccgtgt tccagattgc ctgccacgaa gaaacctttg gcctggataa actctacgaa
     3361 ctgtgcgaaa tcgcccgtga agagctgacc aacggcggct acaacatcgg tcgtgttatc
     3421 gctcgtccgt ttatcggtga caaagccggt aacttccagc gtaccggtaa ccgtcacgac
     3481 ttggctgttg agccgccagc accgaccgtg ctgcagaaac tggttgatga aaaacacggt
     3541 caggtggttt ctgtcggtaa aattgcagac atctacgcca actgcggtat caccaagaaa
     3601 gtgaaagcaa ctggcctgga cgcgctgttt gacgccacca tcaaagagat gaaagaagcg
     3661 ggtgataaca ccatcgtctt caccaacttc gttgacttcg actcttcctg gggccaccgt
     3721 cgcgacgtcg ccggttatgc tgcgggtctg gagctgttcg accgccgtct gccggagctg
     3781 atgtctttgc tgcgcgatga cgacatcctg atcctcactg ctgaccacgg ttgtgatccg
     3841 acctggaccg gtactgacca cacgcgtgaa cacattccgg tactggttta cggcccgaaa
     3901 gtaaaaccgg gttcactggg tcaccgtgaa accttcgcgg atatcggcca gactctggca
     3961 aaatattttg gtacttctga tatggaatat ggcaaagcca tgttctgata atgggtgcgg
     4021 cttgatgccc tcaccccggc cctctcccac agggagaggg tgaaaacatg ttgataagga
     4081 taaaacaatg gctaccccac acattaatgc agaaatgggc gatttcgctg acgtagtttt
     4141 gatgccaggc gacccgctgc gtgcgaagta tattgctgaa actttccttg aagatgcccg
     4201 tgaagtgaac aacgttcgcg gtatgctggg cttcaccggt acttacaaag gccgcaaaat
     4261 ttccgtaatg ggtcacggta tgggtatccc gtcctgctcc atctacacca aagaactgat
     4321 caccgatttc ggcgtgaaga aaattatccg cgtgggttcc tgtggcgcag ttctgccgca
     4381 cgtaaaactg cgcgacgtcg ttatcggtat gggtgcctgc accgattcca aagttaaccg
     4441 catccgtttt aaagatcatg actttgccgc tatcgctgac tttgacatgg tgcgtaacgc
     4501 ggtagacgcg gctaaagcac tgggcattga tgctcgcgtt ggtaacctgt tctccgctga
     4561 cctgttctac tctccggacg gcgaaatgtt cgacgtgatg gaaaaatacg gcatcctcgg
     4621 cgtggaaatg gaagcggctg gtatctacgg cgtcgctgca gaatttggcg cgaaagccct
     4681 gaccatctgt accgtgtctg accacatccg cactcacgag cagaccactg ccgctgagcg
     4741 tcagaccacc ttcaacgaca tgatcaaaat cgcactggaa tccgttctgc tgggcgataa
     4801 agagtaattg tgtttcgctg aaaggcgatt gtcgtgtgaa gccggagtgg gagactgctc
     4861 cggcttttta gtatctattc atcaatagca actgatttat agatttacta ttatttttca
     4921 tatggataga aaataaaatc tattcaagta tctattcacg
//
LOCUS       DADMJB010000218         4852 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.221, whole genome shotgun sequence.
ACCESSION   DADMJB010000218 DADMJB010000000
VERSION     DADMJB010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4852)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4852)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4852
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.221"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..1250)
                     /locus_tag="JN078_003858"
     CDS             complement(<1..1250)
                     /locus_tag="JN078_003858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid carrier protein"
                     /protein_id="HAY9042884.1"
                     /translation="MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFG
                     KSLKNSIHPQPGGLTSFQSLCTSLAARVGSGNLAGVALAITAGGPRAVFWMWVAAFIG
                     MATSFAECSLAQLYKERDVNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSG
                     VQANAVARALSFSFDFPPLVTGIILAVFALLAITRGLHGVARLMQGFVPLMAIIWVLT
                     SMVICVINIGQLPHVIWSIFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMG
                     STPNAAAAAASWPPHPAAQGIVQMIGIFIDTLVICTASAMLILLAGNDTTYMPLEGIQ
                     LIQKAMRVLMGSWGAEFVTLVVILFAFSSIVANYIYAENNLFFLRLNTPKAIWCLRIC
                     TFATVIGGTLLSLPLMWQLADIIMA"
     gene            1529..2482
                     /gene="tal"
                     /locus_tag="JN078_003859"
     CDS             1529..2482
                     /gene="tal"
                     /locus_tag="JN078_003859"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HAY9042885.1"
                     /translation="MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQ
                     IPEYRKLIDDAVAWAKQQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLS
                     YDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFS
                     FAQARACAEAGVFLISPFVGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGY
                     ETVVMGASFRNIGEILELAGCDRLTIAPTLLKELAESEGAIERKLSYTGEVKARPARI
                     TESEFLWQHNQDPMAVDKLAEGIRKFAIDQEKLEKMIGDLL"
     gene            2597..3184
                     /gene="mog"
                     /locus_tag="JN078_003860"
     CDS             2597..3184
                     /gene="mog"
                     /locus_tag="JN078_003860"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HAY9042886.1"
                     /translation="MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSVLTTPFELET
                     RLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQ
                     MRQISLHFVPTAILSRQVGVIRKQALILNLPGQPKSIKETLEGVKDAAGNVVVHGIFA
                     SVPYCIQLLEGPYVETAPEVVAAFRPKSARRDVSE"
     gene            complement(3219..3785)
                     /gene="satP"
                     /locus_tag="JN078_003861"
     CDS             complement(3219..3785)
                     /gene="satP"
                     /locus_tag="JN078_003861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HAY9042887.1"
                     /translation="MGNTKLANPAPLGLMGFGMTTILLNLHNVGYFALDGIILAMGIF
                     YSGIAQIFAGLLEYKKGNTFGLTAFTSYGSFWLTLVAILLMPKLGLTDAPNAQFLGVY
                     LGLWGVFTLFMFFGTLKGARVLQFVFFSLTVLFALLAIGNIAGNAAIIHFAGWIGLIC
                     GASAIYLAMGEVLNEQFGRTVLPIGESH"
     gene            complement(3934..4647)
                     /gene="msyB"
                     /locus_tag="JN078_003862"
     CDS             complement(3934..4647)
                     /gene="msyB"
                     /locus_tag="JN078_003862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acidic protein MsyB"
                     /protein_id="HAY9042888.1"
                     /translation="MNVNYLNDSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLM
                     RNELFKSMEGHPEQHRRNWQLIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKL
                     KADKEMSTFEIEQQLLEQFLRNTWKKMDEEHKQEFLHAFDARVNELEELLPLLMKDKL
                     LAKGVSHLLSSQLTRILRTHAAMSVLGHGLLRGAGLGGPVGAALNGVKAVSGSAYRVT
                     IPAVLQIACLRRMVSATQV"
     gene            complement(4673..>4852)
                     /locus_tag="JN078_003863"
     CDS             complement(4673..>4852)
                     /locus_tag="JN078_003863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2541 family protein"
                     /protein_id="HAY9042889.1"
                     /translation="ARSASQSLNIPSEIKEGQTTDWININSDNDNKRCVSKITFSGHT
                     VNSSDMATLKIIGDD"
BASE COUNT         1275 a         1250 c         1228 g         1099 t
ORIGIN      
        1 gccattatga tatctgccag ttgccacatc agcggaaggc ttagcaaggt gccgccgatg
       61 accgttgcga aggtgcagat ccgcaaacac cagatcgctt taggggtgtt caggcgtaaa
      121 aagaagagat tgttttcggc ataaatgtag ttggcaacga tggagctgaa ggcaaacaga
      181 ataaccacga gggtaacaaa ctcagcaccc caggaaccca ttagcacccg catcgccttc
      241 tggataagct gaataccttc cagcggcatg taggttgtgt cgttacccgc cagtaatatc
      301 agcatggcgc ttgccgtaca gatgaccagg gtgtcgataa aaatgccaat catctggaca
      361 atcccttgcg ctgccggatg cggaggccag gacgccgctg ccgctgccgc gtttggcgtc
      421 gaacccattc ccgcctcatt ggaaaacata ctgcgctgaa aaccgttagt aatcgcctgg
      481 cttaaggtat atcccgccgc gccgcctgcc gcttcctgcc agccaaaagc actctcaaaa
      541 atagaccaaa tgacgtgggg aagttgcccg atatttatta cgcaaatcac catgctggtc
      601 agcacccaga ttatcgccat caacgggaca aacccctgca tgagccgggc gacgccatga
      661 agaccgcgag tgattgccag cagagcaaag acagcgagaa taatgcctgt caccagcggg
      721 ggaaaatcaa aagaaaaact cagggctcgg gcaacggcgt tcgcctgaac tccgctgaaa
      781 attatgccgt aggcgatgag caaaaagacg gcgaacagaa cgcccatcca acgcatcccc
      841 agcccgcgcg ccatatacca tgccggtccg ccacgaaact gcccattgac gtcacgttct
      901 ttataaagtt gtgcaaggga acattcggca aacgaggtcg ccatgccgat aaacgcggca
      961 acccacatcc aaaagacggc tctaggtcca ccggcggtaa tagccagcgc aacgccggcc
     1021 aggttgccgc tacccacgcg cgccgcaaga ctggtacaca atgactgaaa tgaggttaaa
     1081 ccgcctggct gtggatgaat gctattttta agacttttgc caaactggcg gatgtagcga
     1141 aactgcacaa atccggtgcg aaaagtgaac caacaacctg cgccgaagag caggtaaatc
     1201 attaccgatc cccaaaggac gctgttaata aaggagaaaa aatctggcat gcatatccct
     1261 cttattgccg gtcgcgatga ctttcctgtg taaacgttac caattgttta agaagtatat
     1321 acgctacgag gtacttgata acttctgcgt agcatacatg aggttttgta taaaaatggc
     1381 gggcgatatc aacgcagtgt cagaaatccg aaacagtctc gcctggcgat aaccgtcttg
     1441 tcggcggttg cgctgacgtt gcgtcgtgat atcatcaggg cagaccggtt acatccccct
     1501 aacaagctgt ttaaagagaa atactatcat gacggacaaa ttgacctccc ttcgtcagta
     1561 caccaccgta gtggccgaca ctggggacat cgcggcaatg aagctgtatc aaccgcagga
     1621 tgccacaacc aacccttctc tcattcttaa cgcagcgcag attccggaat accgtaagtt
     1681 gattgatgat gctgtcgcct gggcgaaaca gcagagcaac gatcgcgcgc agcagatcgt
     1741 ggacgcgacc gacaaactgg cagtaaatat tggtctggaa atcctgaaac tggttccggg
     1801 tcgtatctca actgaagttg atgcgcgtct ttcctatgac accgaagcgt caattgcgaa
     1861 agcaaaacgc ctgatcaaac tctacaacga tgctggtatt agcaacgatc gtattctgat
     1921 caaactggct tctacctggc agggtatccg tgctgcagaa cagctggaaa aagaaggcat
     1981 caactgtaac ctgaccctgc tgttctcctt cgctcaggct cgtgcttgtg cggaagcagg
     2041 cgtgttcctg atctcgccat ttgttggccg tattcttgac tggtacaaag cgaatactga
     2101 taagaaagag tacgctccgg cagaagatcc gggcgtggtt tctgtatctg aaatctacca
     2161 gtactacaaa gagcacggtt atgaaaccgt ggttatgggc gcaagcttcc gtaacatcgg
     2221 cgaaattctg gaacttgcag gctgcgaccg tcttaccatc gcacctacac tgctgaaaga
     2281 gctggctgag agcgaagggg ctatcgaacg taaactgtct tacaccggcg aagtgaaagc
     2341 gcgtccggcg cgtatcactg agtccgagtt cctgtggcag cacaaccagg atccaatggc
     2401 agtagataaa ctggcggaag gtatccgtaa gtttgctatt gaccaggaaa aactggaaaa
     2461 aatgatcggc gatctgctgt aatcattctt agcgtgaccg ggaagtcggt cacgctacct
     2521 cttctgaagc ctgtctgtca ctcccttcgc agtgtatcat tctgtttaac gagactgttt
     2581 aaacggaaaa atcttgatga atactttacg tattggctta gtttccatct ctgatcgcgc
     2641 atccagcggc gtttatcagg ataaaggcat ccctgcgctg gaagaatggc tgacatcggt
     2701 gctaaccacg ccgtttgaac tggaaacccg cttaatcccc gatgagcagg cgatcatcga
     2761 gcaaacgttg tgtgagctag tggatgaaat gagttgccat ctggtgctca ccacgggcgg
     2821 aactggcccg gcgcgtcgtg acgtaacgcc cgatgcgacg ctggcagtag cggaccgcga
     2881 gatgcctggc tttggtgaac agatgcgcca gataagcctg cattttgtac caactgcgat
     2941 cctttcgcgt caggttggtg tgattcgcaa acaggcgctg atccttaact tacccggtca
     3001 gccgaagtct attaaagaga cgctggaagg tgtgaaggac gctgcgggta acgttgtggt
     3061 acacggtatt tttgccagcg taccgtactg cattcagttg ctggaagggc catacgttga
     3121 aacggcacca gaagtggttg ctgcattcag accgaagagt gcaagacgcg acgttagcga
     3181 ataaaaaaat ccccccgagc ggggggatct caaaacaatt agtgggattc accaatcggc
     3241 agaacggtgc gaccaaactg ctcgttcagt acttcaccca tcgccagata gattgcactg
     3301 gcaccacaga tcagaccaat ccagccggca aagtggatga ttgcggcgtt accggcaatg
     3361 ttaccgatcg ccagcagggc aaacagcaca gtcaggctaa agaaaacgaa ttgcagaacg
     3421 cgtgcgcctt tcagcgtgcc gaagaacata aacagcgtaa atacgcccca cagacccagg
     3481 tagacaccaa ggaactgtgc atttggcgca tcggtcagac ccagtttcgg catcagcaga
     3541 atcgcaacca gcgtcagcca gaaagaaccg taagaggtga atgcggttaa accgaaagtg
     3601 ttgccttttt tgtactccag cagaccagca aaaatttgcg cgatgccgct gtagaaaatg
     3661 cccatggcaa gaataatacc gtccagagcg aaataaccca cgttgtgcag gttaagcaga
     3721 atggtggtca tgccgaagcc catcaggccc agcggtgccg gattagccaa cttagtgttg
     3781 cccataattc ctcaaaaatc atcatcgaat gaatggtgaa ataatttccc tgaataactg
     3841 tagtgttttc agggcgcggc ataataatca gccagtgggg cagtgtctac gatcttttga
     3901 ggggaaaatg aaaattttcc ccggtttccg gtatcagacc tgagtggcgc taaccatccg
     3961 gcgcaggcag gcgatttgca gtacggctgg aatcgtcacg cgataggcgc tgccgctgac
     4021 cgctttaacc ccatttagtg ccgcacctac agggcctccc agccccgcgc cgcgcagcaa
     4081 accatgccca agtacgctca ttgctgcgtg ggtgcgtaaa atgcgggtca gttggctgga
     4141 aagcaaatgc gacacgcctt ttgccaataa tttgtctttc atcagcagcg gcagcagctc
     4201 ttccagctca ttcaccctcg catcgaacgc gtgcagaaac tcctgcttat gttcctcgtc
     4261 cattttcttc caggtattac gcagaaattg ttccagtaac tgttgctcaa tttcaaacgt
     4321 agacatctct ttgtcggctt tcagcttcaa tcgttttgaa acatcgagca aaatggcccg
     4381 atacaattta ccgtgtccgc gcagtttgtt ggcgatacta tcgccaccaa aatgctgtaa
     4441 ttctccagca atcagctgcc agttgcggcg atgttgctcg ggatgccctt ccatcgattt
     4501 aaacagttcg ttgcgcatca gtacgctgga gaggcgagtt ttgccttttt cattatgggt
     4561 gagcaatcgg gcgaaatttg ccaactgttc ctcactacaa tgctgaagaa aatccagatc
     4621 tgaatcattc aggtaattaa cattcatttt ttgtggcttc tatattctgg cgttagtcgt
     4681 cgccgataat tttcagcgtg gccatatccg atgagttcac cgtatgaccg gaaaaggtga
     4741 tttttgagac gcagcgttta ttgtcgttat cactgttaat gttgatccag tcagtggttt
     4801 gcccttcttt tatttctgaa ggaatattca gactctgact ggcgctacgg gc
//
LOCUS       DADMJB010000219         4820 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.222, whole genome shotgun sequence.
ACCESSION   DADMJB010000219 DADMJB010000000
VERSION     DADMJB010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4820
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.222"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..4049)
                     /locus_tag="JN078_003864"
     CDS             complement(<1..4049)
                     /locus_tag="JN078_003864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HAY9042890.1"
                     /translation="MNKIFKVIWNPATGNYTVTSETAKSRGKKSGRSKLLISALVAGG
                     MLSSFGALANAGNDNGQGVDYGSGSAGDGWVAIGKGAKANTFMNTSGSSTAVGYDAIA
                     EGQYSSAIGSKTHAIGGASMAFGVSAISEGDRSIALGASSYSLGQYSMALGRYSKALG
                     KLSIAMGDSSKAEGANAIALGNATKATEIMSIALGDTANASKAYSMALGASSVASEEN
                     AIALGRSSVASGTDSLAFGRQSLASAANAIAIGAETEAAENATAIGNNAKAKGTNSMA
                     MGFGSLADKVNTIALGNGSQALADNAIAIGQGNKADGVDAIALGNGSQSRGLNTIALG
                     TASNATGDKSLALGSNSSANGINSVALGADSIADLDNTVSVGNSSLKRKIVNVKNGAI
                     KSDSYDAINGSQLYAISDSVAKRLGGGAAVDVDDGTVTAPTYNLKNGSKNNVGAALAV
                     LDENTLQWDQTKGKYSAAHGTSSPTASVITDVADGTISASSKDAVNGSQLKATNDDVE
                     ANTANIATNTSNIATNTANIATNTTNITNLTDSVGDLQADALLWNETKKAFSAAHGQD
                     TTSKITNVKDADLTADSTDAVNGSQLKTTNDAVATNTTNIANNTSNIATNTTNISNLT
                     ETVTNLGEDALKWDKDNGVFTAAHGTETTSKITNVKDGDLTTGSTDAVNGSQLKTTND
                     AVATNTTNIATNTTNISNLTETVTNLGEDALKWDKDNGVFTAAHGNNTASKITNILDG
                     TVTATSSDAINGSQLYDLSSNIATYFGGNASVNTDGVFTGPTYKIGETNYYNVGDALA
                     AINSSFSTSLGDALLWDATAGKFSAKHGTNGDASVITDVADGEISDSSSDAVNGSQLH
                     GVSSYVVDALGGGAEVNADGTITAPTYTIANADYDNVGDALNAIDTTLDDALLWDADA
                     GENGAFSAAHGKDKTASVITNVANGAISAASRDAINGSQLYTTNKYIADALDGDAEVN
                     ADGTITAPTYTIANAEYNNVGDALDALDDNALLWDETANGGAGAYNASHDGKASIITN
                     VANGSISEDSTDAVNGSQLNATNMMIEQNTQIINQLAGNTDATYIQENGAGINYVRTN
                     DDGLAFNDASAQGVGATAIGYNSVAKGDSSVAIGQGSYSDVDTGIALGSSSVSSRVIA
                     KGSRDTSITENGVVIGYDTTDGELLGALSIGDDGKYRQIINVADGSEAHDAVTVRQLQ
                     NAIGAVATTPTKYFHANSTEEDSLAVGTDSLAMGAKTIVNGDKGIGIGYGAYVDANAL
                     NGIAIGSNAQVIHVNSIAIGNGSTTTRGAQTNYTAYNMDAPQNSVGEFSVGSADGQRQ
                     ITNVAAGSADTDAVNVGQLKVTDERVAQNT"
     gene            complement(4093..4674)
                     /locus_tag="JN078_003865"
     CDS             complement(4093..4674)
                     /locus_tag="JN078_003865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3251 domain-containing protein"
                     /protein_id="HAY9042891.1"
                     /translation="MKQQEEHNNKIDLLEKQQAQLKSQLETIQKQQTGIISSTKTLTH
                     VIKSVKDQQNTFIFTEFNPAKTKYFILNNGSVALAGRVLSIDATENGSVIHISLVNLL
                     STPISNIGFNATWGGEKPVDAKEFARWQQLLFNTSMKSTLKLLPGQWQDINLTLKGVS
                     PNNLGYLKLAINMENIQFDNLPSAENRQKRSKK"
BASE COUNT         1097 a         1191 c         1133 g         1399 t
ORIGIN      
        1 gtattttgcg ctacgcgctc atcagtgact ttcaactgac ccacgttaac cgcatcggta
       61 tccgctgaac cagctgcgac gtttgtgatc tgacgttgac catccgcact accgactgag
      121 aattcaccga cagagttctg cggtgcgtcc atgttgtagg cggtataatt ggtttgagcg
      181 ccacgagtgg tcgtagaacc attacctatc gcaatactgt tgacatgaat gacttgcgca
      241 ttgctaccaa tggcaatgcc gttaagtgca ttcgcgtcca cgtaggcacc ataaccgata
      301 ccaatacctt tatcgccatt cacgatggtt ttcgcaccca ttgccagcga gtcagttccc
      361 actgccagtg aatcttcttc cgttgaatta gcgtggaagt atttagtcgg cgtggttgcg
      421 accgcaccaa tcgcattctg caattgacga accgtaacgg cgtcatgggc ttcggaacca
      481 tcggctacgt tgatgatttg acgatattta ccgtcatcac cgatagacaa tgcaccgagc
      541 agttcgccat ccgtggtgtc gtaaccaata acaacgccat tttccgttat gctggtgtca
      601 cgggagcctt tggcaatcac tcggctggaa acagagctgc tacctagggc gatacccgta
      661 tcaacgtcgc tgtagctgcc ctgaccaata gctacgctgc tatcgccttt ggcgacagag
      721 ttataaccta tagctgtagc gccaacaccc tgtgcgctgg cgtcgttgaa cgctaagccg
      781 tcgtcgttag tacgcacata gttaataccc gcaccgtttt cttggatata ggttgcgtcg
      841 gtgttaccag cgagctgatt gataatttgg gtgttctgct caatcatcat attcgtcgca
      901 ttcaactgag aaccgttcac tgcatcggta ctgtcctcac taatactgcc attagcgaca
      961 ttagtgatga tgctggcttt accgtcatgg ctggcattgt aggctccagc accgccattg
     1021 gcagtctcat cccacagcag ggcgttatca tcaagcgcat ccagagcgtc accgacgttg
     1081 ttgtactcgg cgttcgcaat ggtgtaagtc ggtgcggtga tggtgccgtc agcgttgact
     1141 tctgcgtcac catccagcgc atcagcgatg tacttattgg tggtatagag ttgtgagccg
     1201 ttaatcgcgt ctctgctggc agcagagatt gcaccgttag cgacgttagt gattacactg
     1261 gcagttttat cttttccgtg agcggcgcta aatgcaccat tttcaccggc gtccgcatcc
     1321 cagagcagag cgtcgtcaag agtggtatcg atagcattca gggcatcacc gacattatcg
     1381 taatcagcat tagcaatggt gtacgtcggc gcagtgatgg tgccgtctgc attgacttcg
     1441 gcaccacccc ccagcgcatc aacaacataa ctgctcacgc cgtggagttg tgagccgttt
     1501 actgcgtcag aactggagtc tgaaatttca ccatctgcga catcagtgat cacgcttgcg
     1561 tcaccattag taccgtgttt ggcactgaat ttacctgcgg tggcatccca aagcagagca
     1621 tcgccgagag acgtgctaaa tgaggagtta atcgcagcca gtgcatcgcc gacgttataa
     1681 taatttgttt caccgatttt gtaggttgga ccggtaaaca caccgtcagt attcacagaa
     1741 gcattgccgc cgaagtaggt ggcgatattg ctgcttaagt cataaagctg gctaccgtta
     1801 atggcatcgg aactggttgc agtgactgtg ccgtccagga tattggtgat tttgctggcg
     1861 gtattgttgc catgagctgc agtgaagaca ccattgtcct tatcccattt cagcgcatcc
     1921 tcaccaagat tagtcaccgt ctcagtcaga ttagagatgt tggtggtgtt agtggcgata
     1981 ttggtggtat tcgtcgccac ggcatcgttg gtggttttca gctgagagcc gttaacggca
     2041 tcggtgctgc cagtcgtcag gtcgccatct ttaacgttgg tgattttgct ggtggtctcg
     2101 gtgccatgag ctgccgtgaa tacaccattg tccttatccc atttcagcgc atcctcacca
     2161 agattagtca ccgtctcagt cagattagag atgttggtgg tgttagtggc aatattggaa
     2221 gtgttattgg cgatattggt ggtattcgtc gccacagcat cgttggtggt tttcagctga
     2281 gagccgttaa cagcatcagt gctgtcagcc gtcaggtcgg catctttaac gttggtgatt
     2341 ttgctggtgg tatcctggcc gtgagctgca ctgaatgcct ttttagtttc gttccagagc
     2401 agggcatcag cctgaaggtc accaacggaa tccgtcaggt tggtgatatt ggtggtattg
     2461 gtggcaatat ttgccgtatt cgtggcaatg ttgctggtat tagtagcgat attggcggtg
     2521 ttggcttcga catcgtcatt ggtagctttc agttgggaac cgttaaccgc atccttactg
     2581 gaggctgaaa tcgtgccatc cgcaacatcg gtgattacgc tggcagttgg gctactagta
     2641 ccatgagcag cgctgtattt gcctttggtt tggtcccatt gcagggtgtt ttcatcaagt
     2701 acagcgagcg cagcccctac gttatttttg ctaccatttt ttaaattgta ggttggtgct
     2761 gtaacagtac cgtcatcaac atctactgca gcccctcctc caagcctttt tgctaccgag
     2821 tcgctaatgg cataaagctg tgaaccatta atggcatcgt aactgtcaga cttgatcgcg
     2881 ccatttttca cattaacgat cttgcgtttt aatgaactat tgccgacaga gacggtattg
     2941 tctaaatccg caatggaatc tgcgcccagc gcgacagagt taataccgtt ggcactgcta
     3001 ttactaccaa gcgcaagact cttatcacca gttgcattac tggctgtgcc taaggcaatg
     3061 gtgtttaagc ctctcgactg gctaccatta cccagagcga tggcatccac gccatcagct
     3121 ttgttgccct ggcctatggc gattgcatta tctgccagag cctggctgcc atttcctaat
     3181 gcgatagtat tgactttatc ggcaaggctt ccgaacccca ttgccatgct attagtccct
     3241 tttgccttcg cattattgcc aatagcagtt gcattttcag cggcttcggt ctcagcacct
     3301 atcgcaatag cgttcgctgc gctggcaagt gattgtctgc caaatgcgag gctgtcagta
     3361 ccgctagcta cactgctacg ccccagggca attgcgtttt cttcagatgc gacgctactt
     3421 gctcccagcg ccattgaata cgcttttgac gcattggcgg tgtcgccaag agcaatactc
     3481 ataatctcag tagctttagt ggcatttccc agggcaatgg cgtttgctcc ttccgctttg
     3541 gaagagtccc ccatagcaat agacaattta cccaatgctt ttgaataacg gccgagggcc
     3601 attgagtatt ggcccaatga atacgaagag gcacccagtg ctatacttct atcgccttct
     3661 gatattgcac taaccccaaa ggccattgat gcaccaccaa tcgcatgggt ttttgacccg
     3721 atggcagagc tatattggcc ttcagctata gcgtcataac ccacagcagt actggaacca
     3781 ctggtgttca taaaagtatt tgctttcgcc cctttgccta tagcaaccca gccgtcgcca
     3841 gctgatccac taccgtaatc aacaccctga ccgttgtcat tcccggcatt cgccaatgcc
     3901 ccaaacgacg acaacattcc acccgcaacc agcgcagaaa ttaacagctt actgcgccca
     3961 gatttcttgc cacggctttt tgccgtttcg ctggtaacag tataattccc tgtcgcaggg
     4021 ttccagataa ctttaaatat tttgttcatt aatgatgctc gctattcctt gttataagtg
     4081 tactaactgc atttattttt tgcttctttt ctgccgattt tcagcagagg gaagattgtc
     4141 gaactgaata ttttccatgt tgatggctaa cttcagatat cccaggttat tgggcgagac
     4201 acccttcagg gtcaaattaa tgtcttgcca ttgacctggt aataatttca atgtggattt
     4261 cattgatgtg ttgaaaagta attgttgcca ccgggcaaac tctttggcat cgacaggttt
     4321 ttcaccaccc catgtcgcat taaaaccaat atttgagata ggtgtactta ataagttgac
     4381 cagtgaaata tgaataacac tgccattctc tgtggcgtca atggataaca ctcgacccgc
     4441 taaagccacc gaaccattgt tcaggatgaa atacttcgtt tttgctgggt taaactcggt
     4501 aaaaataaaa gtgttttgtt gatctttaac ggatttaatt acgtgagtta aagtctttgt
     4561 actgcttatt atgccagttt gttgtttttg aatagtttcc agttgactct ttagctgtgc
     4621 ttgttgtttt tcaagtagat caattttatt gttatgttct tcttgttgtt tcaataaact
     4681 actttctggc ttgccttctt caatgtagtc acatcccgtt aatgcgcaga gaactgaaac
     4741 agtgacagca ctgaaaaaaa tcttcttcaa gttcatgtaa aaatccttat ttcctccgac
     4801 cagcgatcaa tgccggtaga
//
LOCUS       DADMJB010000220         4795 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.223, whole genome shotgun sequence.
ACCESSION   DADMJB010000220 DADMJB010000000
VERSION     DADMJB010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4795)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4795)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4795
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.223"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..800
                     /locus_tag="JN078_003866"
     CDS             <1..800
                     /locus_tag="JN078_003866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001079584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HAY9042892.1"
                     /translation="SITNLNNQVTNLDTRVTNIENGIGDIVTTGSTKYFKTNTDGVDA
                     NAQGKDSVAIGSGSIAAADNSVALGTGSVAEEENTISVGSSTNQRRITNVAAGVNATD
                     AVNVSQLKSSEAGGVRYDTKADGSIDYSNITLGGGNGSTTRISNVSAGVNNNDAVNYA
                     QLKQSVQETKQYTDQRMVEMDNKLSKTESKLSGGIASAMAMTGLPQAYTPGASMASIG
                     GGTYNGESAVALGVSMVSANGRWVYKLQGSTNSQGEYSAALGAGIQW"
     gene            1168..2823
                     /gene="lldP"
                     /locus_tag="JN078_003867"
     CDS             1168..2823
                     /gene="lldP"
                     /locus_tag="JN078_003867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HAY9042893.1"
                     /translation="MNLWQQNYDPAGNIWLSSLIASLPILFFFFALIKLKLKGYVAAS
                     WTVAIALAVALLFYKMPVANALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDI
                     IRSSILSITPDQRLQMLIVGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLC
                     LIVNTAPVAFGAMGIPILVAGQVTGIDSFEIGQMVGRQLPFMTIIVLFWIMAIMDGWR
                     GIKETWPAVVVAGGSFAIAQYLSSNFIGPELPDIISSLVSLLCLTLFLKRWQPVRVFR
                     FGDLGASQVDMTLAHTGYTAGQVLRAWTPFLFLTATVTLWSIPPFKALFASGGALYEW
                     VINIPVPYLDKLVARMPPVVSEATAYAAVFKFDWFSATGTAILFAALLSIVWLKMKPS
                     DAISTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALAHTGHAFTFFSPFLG
                     WLGVFLTGSDTSSNALFAALQATAAQQIGVSDLLLVAANTTGGVTGKMISPQSIAIAC
                     AAVGLVGKESDLFRFTVKHSLIFTCMVGVITTLQAYVLTWMIP"
     gene            2823..3599
                     /gene="lldR"
                     /locus_tag="JN078_003868"
     CDS             2823..3599
                     /gene="lldR"
                     /locus_tag="JN078_003868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LldR"
                     /protein_id="HAY9042894.1"
                     /translation="MIVLPRRLSDEVADRVRALIDEKNLEAGMKLPAERQLAMQLGVS
                     RNSLREALAKLVSEGVLLSRRGGGTFIRWRHDTWSEQNIVQPLKTLMADDPDYSFDIL
                     EARYAIEASTAWHAAMRATPGDKEKIQLCFEATLSEDPDIASQADVRFHLAIAEASHN
                     IVLLQTMRGFFDVLQSSVKHSRQRMYLVPPVFSQLTEQHQAVIDAIFAGDADGARKAM
                     MAHLSFVHTTMKRFDEDQARHARITRLPGEHNEHSREKNA"
     gene            3596..4786
                     /gene="lldD"
                     /locus_tag="JN078_003869"
     CDS             3596..4786
                     /gene="lldD"
                     /locus_tag="JN078_003869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent L-lactate dehydrogenase"
                     /protein_id="HAY9042895.1"
                     /translation="MIISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSE
                     VALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADTHGIP
                     FTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPT
                     PGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLE
                     DYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHG
                     GRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLY
                     ALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQGLGKELPAALAPMAK
                     GNAA"
BASE COUNT         1055 a         1273 c         1301 g         1166 t
ORIGIN      
        1 agagcattac taacctgaac aatcaggtca ctaatctgga tactcgcgtt actaatatcg
       61 aaaacggtat tggcgacatt gtcaccaccg gtagcaccaa gtacttcaag accaacaccg
      121 atggcgtaga tgccaacgcc cagggtaaag atagcgttgc tattggttct ggttccattg
      181 ctgccgctga caacagcgtc gcactgggta ccggttccgt tgcagaggaa gaaaatacaa
      241 tctctgtagg ttcttctact aaccaacgcc gtatcaccaa cgtagctgcc ggtgttaatg
      301 ccaccgatgc ggttaacgtg tcgcagctga aatcttctga agcaggcggc gtgcgctacg
      361 acaccaaagc tgatggttct atcgactata gcaatatcac cctcggtggt ggcaacggca
      421 gtacgactcg tatcagcaac gtctccgctg gcgtcaacaa caacgacgcg gtgaactacg
      481 cgcagttgaa gcaaagcgtg caggaaacga agcaatacac cgatcagcgg atggttgaga
      541 tggataacaa actgtctaaa actgaaagca agttgagcgg tggtatcgct tctgcaatgg
      601 caatgaccgg tctgccgcag gcttatacac cgggtgccag catggcttct attggtggcg
      661 gtacttacaa cggtgaatcg gcagttgctt taggtgtatc gatggtgagc gccaatggtc
      721 gttgggtcta caaattacaa ggtagtacca atagccaggg tgaatactcc gccgcactcg
      781 gtgccggtat tcagtggtaa tgatccatta agttagtgtg actaagggca aacgccaaat
      841 tgcctgatgc gttacgcgca tcaggcaaga taaggcgctc cgggtcaaca atctaagggc
      901 aattctctga tgaggattgc ccttttcttt accagacatc tccccccaca agaattggcc
      961 ctaccaattc ttcgcttatc tgacctctgg ttcacaattc cccaattaaa actcacatca
     1021 atattgccaa tacacaacat ttagttaacc attcattgtc attatcccta cacaacacaa
     1081 ttggcagtgc cacttttaca caacgtgtga caaggagatg agcaacagac tcattacacg
     1141 atgtgcgtgg actccaggag acctgcaatg aatctctggc aacaaaacta cgatcccgcc
     1201 gggaatatct ggctttccag tctgatagca tcgcttccca tcctgttttt cttctttgcg
     1261 ctgattaagc tcaaactgaa aggatacgtc gccgcctcat ggacggtagc aatcgccctt
     1321 gccgtggctt tgctgttcta taaaatgccg gtcgctaacg cgctggcctc ggtggtttat
     1381 ggcttcttct atggtttgtg gcccatcgcg tggatcatta ttgcagcagt gttcgtctat
     1441 aagatctcgg tgaaaaccgg gcagtttgac atcattcgct cgtctattct ttcgataacc
     1501 cctgaccagc gtctgcaaat gctgatcgtc ggtttctgtt tcggcgcttt ccttgaagga
     1561 gccgcaggct ttggcgcacc ggtagcaatt accgccgcat tgctggtcgg cctgggtttt
     1621 aaaccgctgt acgccgccgg actgtgcctg attgttaaca ccgcgccagt ggcatttggc
     1681 gcgatgggca ttccaatcct ggttgccgga caagtaacag gcatcgacag ttttgagatt
     1741 ggccagatgg tggggcgtca gctaccgttt atgaccatta tcgtgctgtt ctggatcatg
     1801 gcgattatgg acggctggcg cggtatcaaa gagacgtggc ctgcggtcgt ggttgcgggc
     1861 ggctcgtttg ccatcgctca gtaccttagc tccaacttca ttgggccgga gctgccggac
     1921 atcatctctt cgctggtatc actgctctgc ctgacgctgt tcctcaaacg ctggcaacca
     1981 gttcgcgtat tccgcttcgg tgacttgggg gcgtcacagg ttgatatgac gctggcccac
     2041 accggttaca ccgcgggtca ggtgttacgt gcctggacac cgttcctgtt cctgaccgct
     2101 accgtaacac tgtggagcat cccgccgttt aaagccctgt tcgcatcggg tggtgcgctg
     2161 tatgagtggg tgatcaacat tccggtgccg tacctcgata aactggttgc ccgtatgcca
     2221 ccagtggtca gcgaggctac agcctatgcc gccgtgttta agtttgactg gttctctgcc
     2281 accggcaccg ccattctgtt tgctgcactg ctctcgattg tctggctgaa gatgaaaccg
     2341 tctgacgcta tcagcacctt cggcagcacg ctgaaagaac tggctctacc catctactcc
     2401 atcggcatgg tgctggcgtt cgcctttatc tcgaactatt ccggactgtc atcaacactg
     2461 gcactggcac tggcgcacac cggtcatgca ttcaccttct tctcgccgtt cctcggctgg
     2521 ctgggggtat tcctgaccgg gtcggatacc tcatctaacg ccctgttcgc cgcgctgcaa
     2581 gccaccgcag cacaacaaat tggcgtctct gatctgttgc tggttgccgc caataccacc
     2641 ggtggcgtca ccggtaagat gatctccccg caatctatcg ctatcgcctg tgcggcggta
     2701 ggcctggtgg gcaaagagtc tgatttgttc cgctttactg tcaaacacag cctgatcttc
     2761 acctgtatgg tgggcgtgat caccacgctt caggcttatg tcttaacgtg gatgattcct
     2821 taatgattgt tttacccaga cgcctgtcag acgaggttgc cgatcgtgtg cgggcgctga
     2881 ttgatgaaaa aaacctggaa gcgggcatga agttgcccgc tgagcgccaa ctggcgatgc
     2941 aactcggcgt atcacgtaat tcactacgcg aggcgctggc aaaactagtg agcgaaggcg
     3001 tgctgctcag tcgacgcggc ggcgggacgt ttattcgctg gcgtcatgac acatggtcgg
     3061 agcaaaacat cgtccagccg ctaaaaacgc tgatggccga tgatccggat tacagtttcg
     3121 atattctgga agcccgctac gccattgaag ccagcaccgc atggcatgcg gcaatgcgcg
     3181 ccacacctgg cgacaaagaa aagattcagc tttgctttga agcaacgcta agtgaagacc
     3241 cggatatcgc ctcacaagcg gacgttcgtt ttcatctggc gattgccgaa gcctcacata
     3301 acatcgtgct gctgcaaacc atgcgcggtt tcttcgatgt cctgcaatcc tcagtgaagc
     3361 atagccgtca gcggatgtat ctggtgccac cggttttttc acaactgacc gaacaacatc
     3421 aggctgtcat tgacgccatt tttgctggtg atgccgacgg ggcgcgtaaa gcaatgatgg
     3481 cgcaccttag ttttgttcac accaccatga aacgattcga tgaagatcag gctcgccacg
     3541 cacggattac ccgcctgccc ggtgagcata atgagcattc gagggagaaa aacgcatgat
     3601 tatttccgca gccagcgatt atcgcgccgc agcgcaacgc attctgccgc cgttcctgtt
     3661 ccactatatg gatggtggtg catattctga atacacgctg cgccgcaacg tggaagattt
     3721 gtcagaagtg gcactgcgcc agcgtattct gaaaaacatg tccgacttaa gcctggaaac
     3781 gacgctgttt aatgagaaat tgtcgatgcc ggtagcactg gcaccggtgg gtttgtgtgg
     3841 catgtatgcg cgtcgtggcg aagttcaggc agccaaagcg gcggacacgc atggcattcc
     3901 gtttactctc tcgacggttt ccgtttgccc gattgaagaa gtcgcgccag ccatcaagcg
     3961 cccaatgtgg ttccagcttt atgtactgcg cgatcgcggc tttatgcgta acgcgctgga
     4021 gcgagcaaaa gcagcgggtt gttcgacgct ggttttcacc gtggatatgc cgacaccggg
     4081 cgcacgctac cgtgatgcgc attcaggtat gagcggccca aatgcggcaa tgcgccgcta
     4141 cttgcaggcg gtgacgcatc cgcaatgggc gtgggatgtg ggcctgaacg gtcgtccaca
     4201 tgatttaggt aatatctcag cttatctcgg caaaccaacc ggactggaag attacatcgg
     4261 ctggctgggg aataacttcg atccgtccat ctcatggaaa gaccttgagt ggatccgcga
     4321 tttctgggat ggcccgatgg tgatcaaagg gatcctcgat ccggaagatg cgcgcgatgc
     4381 agtacgtttt ggtgctgatg gaattgtggt ttctaaccac ggtggccgcc agctggacgg
     4441 tgtactctct tccgctcgtg cgttgcccgc tattgcagat gcggtgaaag gtgatatcgc
     4501 cattctggcg gatagcggaa ttcgtaacgg gcttgatgtc gtgcgtatga ttgcgctcgg
     4561 tgccgacacc gtactgctgg gtcgtgcttt cctgtatgcg ctggcaacag cgggccaggc
     4621 gggtgtagct aacctgctaa atctgatcga aaaagagatg aaagtggcga tgacgctgac
     4681 tggcgcgaaa tcgatcagtg aaattacgca agattcgctg gtgcaagggc tgggtaaaga
     4741 gttgcctgcg gcactggctc ccatggcgaa agggaatgcg gcatagtcgt ttgcg
//
LOCUS       DADMJB010000221         4673 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.224, whole genome shotgun sequence.
ACCESSION   DADMJB010000221 DADMJB010000000
VERSION     DADMJB010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4673
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.224"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            60..1859
                     /gene="cysJ"
                     /locus_tag="JN078_003870"
     CDS             60..1859
                     /gene="cysJ"
                     /locus_tag="JN078_003870"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent assimilatory sulfite reductase
                     flavoprotein subunit"
                     /protein_id="HAY9042896.1"
                     /translation="MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVL
                     NQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYK
                     FKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEF
                     FCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSV
                     ATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDAL
                     GVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYAT
                     LTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIAS
                     SQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPAN
                     PETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKD
                     GVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQAL
                     LEVIAEFGGMDIEAADEFLSELRVERRYQRDVY"
     gene            1859..3571
                     /gene="cysI"
                     /locus_tag="JN078_003871"
     CDS             1859..3571
                     /gene="cysI"
                     /locus_tag="JN078_003871"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001290736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory sulfite reductase (NADPH)
                     hemoprotein subunit"
                     /protein_id="HAY9042897.1"
                     /translation="MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGF
                     KGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPHHAMLLRCRLPGGVITTKQWQAIDKF
                     AGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSN
                     PYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKT
                     TVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGY
                     LPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPI
                     RPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRI
                     TANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERF
                     LPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGN
                     RIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPAR
                     DLWD"
     gene            3646..4380
                     /gene="cysH"
                     /locus_tag="JN078_003872"
     CDS             3646..4380
                     /gene="cysH"
                     /locus_tag="JN078_003872"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenosine phosphosulfate reductase"
                     /protein_id="HAY9042898.1"
                     /translation="MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNL
                     PGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLK
                     VYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ
                     SGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTT
                     RKWEPGMSEEETRFFGLKRECGLHEG"
BASE COUNT         1153 a         1218 c         1334 g          968 t
ORIGIN      
        1 tgttttatgg gcgctgacag ggcgcagaaa cagctttgct tactggaaca taacgacgca
       61 tgacgacaca ggtcccacct tccgcgttgc ttccgttgaa cccggagcaa ctggcacgcc
      121 ttcaggcggc cacgaccgat ttaacgccta cccagcttgc ctgggtttct ggctatttct
      181 ggggcgtact caatcagcag cctgctgcgc ttgcagcgac gccagcgcca gccgcagaaa
      241 tgccgggtat aactattatc tccgcctcgc aaaccggcaa tgcgcgccgg gttgctgaag
      301 cattacgcga tgatttatta gcagcaaaac tgaacgttaa gctggtgaac gcgggcgact
      361 ataaattcaa acaaatcgcc agcgaaaaac tgctcatcgt agtgacgtca acgcaagggg
      421 aaggggaacc gccggaagaa gccgtcgcgc tgcataagtt cctgttctcc aaaaaagcgc
      481 caaagctgga aaacaccgcg tttgccgtgt ttagcctcgg cgatagctct tatgaatttt
      541 tctgccagtc cgggaaagat ttcgacagca agctggcgga actgggtggt gaacgcctgc
      601 tcgaccgtgt cgatgccgat gttgaatacc aggctgctgc cagcgagtgg cgcgcccgcg
      661 tggttgatgc gcttaaatcg cgtgcgcctg tcgcggcacc ttcgcaatcc gtcgctactg
      721 gcgcggtaaa tgaaatccac accagcccgt acagcaaaga cgcgccgctg gtggctagcc
      781 tctctgttaa ccagaaaatt accgggcgta actctgaaaa agacgttcgc catatcgaaa
      841 ttgacttagg tgactcgggc ctgcgttacc agccgggtga cgcgctgggc gtctggtatc
      901 agaacgatcc ggcactggtg aaagaacttg tcgaactgct gtggctgaaa ggcgatgaac
      961 ctgtcaccgt cgagggcaaa acgttgcctc tgaacgaagc gctacagtgg cacttcgaac
     1021 tgaccgtcaa caccgccaac attgttgaga attacgccac gcttacccgc agcgaaacac
     1081 tgctgccgct ggtgggcgat aaagcgaagt tacagcatta cgccgcgacg acgccgattg
     1141 tcgacatggt gcgtttctct ccggcgcaac tggatgccga agcgctgatt aatctgctgc
     1201 gcccgctgac cccgcgcctg tattccatcg cctcctcgca ggcggaagtc gagaacgaag
     1261 tacacgtcac cgttggtgtg gtgcgttacg acgtggaagg ccgagcccgt gccggtggtg
     1321 cctccagctt cctcgcggat cgcgtggaag aagagggcga agtccgcgta tttatcgaac
     1381 ataacgataa ctttcgcctg cccgctaacc cggaaacccc ggtgattatg attggcccag
     1441 gcaccggtat tgcgccgttc cgcgccttta tgcagcaacg cgccgccgac gaagcgccag
     1501 gtaaaaactg gctgttcttt ggtaatccgc actttacgga agacttcctg taccaggtgg
     1561 agtggcagcg ctacgtcaaa gatggcgtgc tgacacgtat cgatcttgcc tggtcgcgcg
     1621 accaaaaaga aaaagtttac gtacaagaca aactgcgcga acagggcgcg gagctgtggc
     1681 gctggatcaa tgatggtgcc cacatttatg tctgcggcga cgctaatcgc atggcgaaag
     1741 acgttgagca ggcacttctg gaagtgattg ccgaatttgg tggcatggac atcgaagcgg
     1801 cggatgaatt tttaagtgag ctgcgcgtag agcgccgtta tcagcgagat gtctactaat
     1861 gagcgaaaaa catccagggc ctttagtggt cgaaggaaaa ctgacagacg ccgagcgcat
     1921 gaagcttgaa agcaactacc tgcgcggcac cattgcggaa gatttaaacg acggtctgac
     1981 cggcggcttt aagggcgaca acttcctgct gatccgcttc cacggcatgt atcagcagga
     2041 tgaccgcgac atccgcgccg aacgtgctga acagaagctg gagccgcacc acgcgatgct
     2101 gcttcgctgt cgtctgccgg gtggggtgat taccactaaa cagtggcagg cgatcgacaa
     2161 atttgccggt gaaaacacca tctatggcag cattcgcctg accaaccgcc agacattcca
     2221 gttccacggc attctgaaaa agaacgtcaa accggtgcac cagatgctgc actcggtcgg
     2281 tcttgatgcg ctggcgacag ctaacgacat gaaccgtaac gtactctgca cctcgaaccc
     2341 ttacgagtcg cagctgcacg cggaagcgta cgagtgggcg aagaagattt ctgagcatct
     2401 gttgcctcgt acccgcgcgt atgcggagat ctggctcgac caggaaaaag tcgccactac
     2461 tgatgaagaa ccgatccttg gtcagaccta cctgccgcgt aagttcaaaa ccacggtagt
     2521 gatcccgccg cagaacgata tcgatctgca tgccaacgac atgaacttcg tggcaatcgc
     2581 cgaaaacggc aagctggtag gcttcaacct gctggtgggc ggtgggcttt ctatcgaaca
     2641 cggcaacaag aaaacctacg cccgcacggc gagcgagttt ggctatctgc cgctggagca
     2701 tacgctggcg gtggccgaag ctgtcgtgac aactcagcgt gactggggta accgaaccga
     2761 tcgtaaaaat gccaaaacca aatacacgct ggagcgcgtg ggggttgaga cgtttaaagc
     2821 ggaagtggag cgtcgcgcgg ggatcaaatt tgaaccgatc cgtccatatg agttcaccgg
     2881 acgaggcgat cgtattggct gggttaaggg cattgatgat aactggcacc tgacgctgtt
     2941 tatcgaaaat ggtcgcatcc ttgattatcc ggggcgtccg ctgaaaaccg gcctgctgga
     3001 gatcgcgaag atccacaaag gcgatttccg cattacggcg aaccagaatc tgatcatcgc
     3061 cggtgtaccg gaaagcgaga aagcgaagat cgagaagatc gccaaagaga gcgggttaat
     3121 gaatgccgtc acgccgcagc gtgaaaactc gatggcctgc gtgtcattcc cgacttgccc
     3181 gctggcgatg gcggaagcag agcgtttcct gccgtctttt atcgacaaca tcgataattt
     3241 aatggcgaaa catggtgtca gcgatgagca tatcgtgatg cgtgtaacag gctgcccgaa
     3301 cggttgtggt cgcgcgatgc tggcggaagt gggcctggtg ggtaaagcgc cgggtcgcta
     3361 caacctgcat cttggcggca accgcattgg gacacgtatc ccacggatgt ataaagaaaa
     3421 catcaccgag ccggaaatcc tggcgtcgct tgatgaactg atagggcgct gggcgaaaga
     3481 gcgcgaagcg ggtgaaggct tcggcgactt tacggtgcgt gcgggcatca ttcgcccggt
     3541 gctcgatccg gcgcgcgatt tgtgggatta accatcagcc cggtcttgta ggcctgataa
     3601 gaacgcgtga gcgtcgcatc aggcaaggca aacagtgagg aatctatgtc caaactcgat
     3661 ctaaacgccc tgaacgaact gccgaaggta gatcgcattc tggcgctggc ggaaactaac
     3721 gccgaactgg aaaaactgga cgctgaaggc cgcgtagcct gggcgctgga taatctgccc
     3781 ggtgaatatg tactttcttc cagctttggc attcaggcgg cggtgagcct gcatctggtg
     3841 aatcaaattc gcccggatat tccggtgatc ctcaccgata cgggttactt gttcccggaa
     3901 acctaccgct ttattgacga gttaacggac aaactcaagc tcaacctgaa agtgtaccgt
     3961 gctaccgaaa gcgcagcctg gcaggaagca cgctacggaa aactgtggga gcagggcgtt
     4021 gaaggcattg aaaagtacaa tgacatcaac aaagtcgaac cgatgaaccg ggctctgaaa
     4081 gaacttaacg cgcaaacctg gtttgctggc ctgcgccgtg aacaatccgg cagtcgcgcc
     4141 aatttaccgg tgctggcaat tcagcgtggc gtatttaaag tgctgccgat tatcgactgg
     4201 gataaccgaa ctatttatca gtacctgcaa aaacatggcc tgaaatatca cccattatgg
     4261 gatgaaggat atttatcggt cggtgatacc catacaaccc gtaaatggga acctggcatg
     4321 tcggaagaag aaacacgttt ctttggctta aaaagggaat gtggattgca cgaagggtaa
     4381 atattgccgg ataaattaaa cgcctctgtc agaaatgatg ggggcgtttt tattttgcga
     4441 gcagtattcc tgattttaaa cgtgaacgcc gctggaagaa ttatcaggta tagaatggcg
     4501 tcgggtgctt gaggctgtct ggcgttaagc attcgcgagg ttccagatgg acaaaagccc
     4561 caggcgatat ttctatcaac ctgaggccag cgttcgaacc caaacaattc gaatgttagt
     4621 ctcttctttg cagggaggca agacatgctg acaaaatatg cccttgtggc aat
//
LOCUS       DADMJB010000222         4667 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.225, whole genome shotgun sequence.
ACCESSION   DADMJB010000222 DADMJB010000000
VERSION     DADMJB010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4667)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4667)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4667
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.225"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..755)
                     /locus_tag="JN078_003873"
     CDS             complement(<1..755)
                     /locus_tag="JN078_003873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416329.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic diguanylate phosphodiesterase"
                     /protein_id="HAY9042899.1"
                     /translation="MQKAQRIIKTYRRNRMIVCTICALVTLASTLSVRFISQRNLNQQ
                     RVVQFANHAVEELDKVLLPLQAGSEVLLPLIGLPCSVAHLPLRKQAAKLQTVRSIGLV
                     QDGTLYCSSIFGYRNVPVVDILAELPAPQPLLRLTIDRALIKGSPVLIQWTPAAGSSN
                     AGVMEMINIDLLTAMLLEPQLQQISSASLTVDKRHLLYGNGLVDSLPQPEDNENYQVS
                     SQRFPFTINVNGPGATALAWHYLPTQLPLAVLL"
     gene            complement(886..2250)
                     /locus_tag="JN078_003874"
     CDS             complement(886..2250)
                     /locus_tag="JN078_003874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine dehydratase 1"
                     /protein_id="HAY9042900.1"
                     /translation="MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDSVTR
                     VAVDVYGSLSLTGKGHHTDIAIIMGLAGNEPATVDIDSIPGFIRDVEERERLLLAQGR
                     HEVDFPRDNGMRFHNGNLPLHENGMQIHAYNGDEVVYSKTYYSIGGGFIVDEEHFGQD
                     AANEVSVPYPFKSATELLAYCNETGYSLSGLAMQNELALHSKKEIDEYFAHVWQTMQA
                     CIDRGMNTEGVLPGPLRVPRRASALRRMLVSSDKLSNDPMNVIDWVNMFALAVNEENA
                     AGGRVVTAPTNGACGIVPAVLAYYDHFIESVSPDIYTRYFMAAGAIGALYKMNASISG
                     AEVGCQGEVGVACSMAAAGLAELLGGSPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPC
                     IERNAIASVKAINAARMALRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIK
                     VQCD"
     gene            complement(2434..3012)
                     /locus_tag="JN078_003875"
     CDS             complement(2434..3012)
                     /locus_tag="JN078_003875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HAY9042901.1"
                     /translation="MEYRSLTLDDFLSRFQLLRPQINRETLNHRQAAVLIPIVRRPQP
                     GLLLTQRSIHLRKHAGQVAFPGGAVDDTDASVIAAALREAEEEVAIPPSAVEVIGVLP
                     PVDSVTGYQVTPVIGIIPPDLPYRASEDEVSAVFEMPLAQALHLGRYHPLDIYRRGDS
                     HRVWLSWYEQYFVWGMTAGIIRELALQIGVKP"
     gene            complement(3016..4377)
                     /gene="pabB"
                     /locus_tag="JN078_003876"
     CDS             complement(3016..4377)
                     /gene="pabB"
                     /locus_tag="JN078_003876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component 1"
                     /protein_id="HAY9042902.1"
                     /translation="MKTLSPAVITLPWRQDAAEFYFSRLSHLPWAMLLHSGYADHPYS
                     RFDIVVAEPICTLTTFGKETVVSESEKRTTTTDDPLQVLQQVLDRADIRPTHNEDLPF
                     QGGALGLFGYDLGRRFESLPEIAEQDIVLPDMAVGIYDWALIVDHQRHTVSLLSHNDV
                     NARRAWLESQQFSPQEDFTLTSDWQSNMTREQYGEKFRQVQEYLHSGDCYQVNLAQRF
                     HATYSGDEWQAFLQLNQANRAPFSAFLRLEQGAILSLSPERFILCDNSEIQTRPIKGT
                     LPRLPDPQEDSKQAEKLANSAKDRAENLMIVDLMRNDIGRVAVAGSVKVPELFVVEPF
                     PAVHHLVSTITARLPEQLHASDLLRAAFPGGSITGAPKVRAMEIIDELEPQRRNAWCG
                     SIGYLSFCGNMDTSITIRTLTAINGQIYCSAGGGIVADSQEEAEYQETFDKVTKILRQ
                     LEK"
     gene            4451..4630
                     /locus_tag="JN078_003877"
     CDS             4451..4630
                     /locus_tag="JN078_003877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoaH family protein"
                     /protein_id="HAY9042903.1"
                     /translation="MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRAN
                     HSGERIVARFEDEDE"
BASE COUNT         1171 a         1200 c         1213 g         1083 t
ORIGIN      
        1 cttagcagca ccgccagcgg taattgtgtt ggaagatagt gccatgccag cgccgtagcc
       61 cccggaccat taacgttaat ggtaaaagga aagcgttgcg aagaaacctg atagttttca
      121 ttgtcttcag gttgcggaag ggaatctacc agcccattac catagagcaa atgccgtttg
      181 tccaccgtca ggctggcgct actgatttgc tgcagttgtg gttcaaggag cattgccgtc
      241 agtaagtcga tgttaatcat ctccatgacc ccagcattgc tactgcccgc tgcaggcgtc
      301 cattgaatca aaaccggact gcctttaatc agggcacggt cgatcgtcag gcgtaaaagt
      361 ggttgcggtg caggaagttc agccagaatg tccacgacgg gcacattgcg ataaccaaaa
      421 atgctggagc aatagagtgt gccgtcttgc accaggccaa tggatcgcac agtttggagt
      481 tttgccgcct gtttacgtaa tggcaaatgg gcgacagagc agggcagacc aatcagcgga
      541 agcaagactt cgctacctgc ctgtagggga agcagtactt tatctaattc ctctacagcg
      601 tgattggcga attgtactac ccgttgttga tttaagttac gctgtgaaat aaatcgcacg
      661 ctcagggtcg aagcgagcgt aacgagtgcg caaatcgtac aaacaatcat tcgattacgt
      721 cgataggttt taatgatccg ttgtgctttt tgcatgcggg ccaccctgta agcgtatggc
      781 gacaaacgcc tgacgcaaca gtggatgtgt agtggggaat attacagcag acgagaaagc
      841 gggtataaat tcgcccatcc gttgcagatg ggcgagtaag aagtattagt cacactggac
      901 tttgattgcc agaccaccgc gtgaggtttc gcggtatttg gcgttcatgt ccttaccggt
      961 ttcgtacatc gtttcgatga ccttatccag cgagacgcgc ggtgcactgg tgcggcgcag
     1021 agccatccgt gcggcgttaa tcgccttcac agaggcaatg gcattacgct caatgcacgg
     1081 cacctgaacc tgccctgcaa ccgggtcgca ggttaaacca aggttgtgtt ccatgccaat
     1141 ttccgccgcc acgcaaacct gttccgggct accgcccagc agttctgcaa gacccgcagc
     1201 agccattgaa caggcaacac ccacttcgcc ctggcaacca acttccgcac cggaaataga
     1261 ggcgttcatt ttatacaatg caccaatcgc gcccgctgcc ataaagtaac gggtatagat
     1321 gtccgggctg accgattcaa taaagtggtc atagtaagcc agcactgccg gaacgatacc
     1381 gcaggcaccg ttggttggcg cagttaccac acgaccaccg gcggcgtttt cttcgttaac
     1441 tgccagcgca aacatgttta cccagtcaat gacattcatc ggatcgttag acagtttatc
     1501 gctggaaacc agcatccggc gcagggcaga cgcacgacgt ggcacgcgca gcgggcctgg
     1561 cagtacacct tcggtgttca tcccgcgatc gatacatgcc tgcatggttt gccagacatg
     1621 cgcgaaatac tcgtcgatct ctttcttgct gtgcagcgcc agttcgttct gcatagcgag
     1681 accagacagc gaatagccgg tttcattaca gtacgcgagc agttcggtgg cagatttgaa
     1741 cggatacggc acgctcactt cgttggcagc atcctgacca aagtgttctt catcgacgat
     1801 aaaaccgccg ccgatggaat aataagtttt gctgtagacg acttcatcgc cgttataggc
     1861 gtggatttgc ataccgtttt catgcagcgg caggttgccg ttatgaaaac gcatcccgtt
     1921 gtcgcgcggg aaatccactt catgccgtcc ctgtgccagc agcagacgtt cgcgctcttc
     1981 tacgtcgcga ataaaaccgg gaatactgtc gatatccacg gtggcaggtt cgttacctgc
     2041 aagacccata ataatggcga tatcggtgtg gtggccttta cccgtcagcg acagtgaacc
     2101 ataaacgtcc acggcaacgc gagtaacgct atccagtaag cctttttcga ccagatcatc
     2161 gacgaactgt ttacccgcct tcataggccc tacggtatgg gaagatgagg gaccaatccc
     2221 caccttaaac atgtcgaata gactaatcac gataatactc ctgacaaggt gactggactt
     2281 ccagtaacga actaataaca gcgcatagtg taagagggaa cgcggcgact ggcttaacta
     2341 ttcacatgaa ttaaactaat caaaaaccgc gatttaacta atattgcgat gattgtctca
     2401 agtagtgttt tgtagatgta aagataagta tagtcagggt ttcacaccaa tttgcagcgc
     2461 cagctcacga attatgcctg cggtcattcc ccatacaaaa tactgttcgt accaggacag
     2521 ccatacccga tgtgaatcgc cacggcggta gatatctaaa gggtgataac gacccagatg
     2581 taatgcctgg gcgagcggca tttcaaacac cgccgagact tcatcttcac tggcgcgata
     2641 cggcagatcg ggcgggataa tgccgatcac tggggttacc tgatagccag ttacgctatc
     2701 gacgggcggc agcacgccga taacttcaac ggcggaaggc ggtatagcga cctcttcttc
     2761 agcttcgcgc agcgcggcgg cgataactga tgcgtccgtg tcatcgactg cacctccagg
     2821 gaatgccact tgtccagcgt gtttacgcag atgaattgaa cgctgagtca gcaacaaccc
     2881 cggttgcggt cgacggacga tggggattaa cacggcagcc tgacgatgat ttagggtttc
     2941 ccggttaatt tgcgggcgca aaagttgaaa gcgagataaa aaatcatcaa gcgtcaggct
     3001 acggtattcc acgtcttact tctccagttg gcgtaatatc ttagtaactt tatcaaaagt
     3061 ttcctgatat tccgcttctt cctggctatc ggcgacaatt ccaccgcccg cagagcagta
     3121 tatttgtccg ttaatggcag tcagcgtgcg gatagtaatg ctggtatcca tgttgccgca
     3181 aaagctcaaa tagccaatgc tgccgcacca ggcattacgt cgctgcggtt ccagttcgtc
     3241 gataatttcc atagcccgta ctttcggagc cccggttatt gagccaccag gaaaagctgc
     3301 gcgcagcaga tcgctggcgt gtaactgttc tggtagtcgc gccgttatag tgctgaccag
     3361 atgatgcacg gcagggaagg gttccaccac gaagagctct ggtactttta ccgaaccggc
     3421 tacggcaaca cgaccgatat cattacgcat taaatcgaca atcatcagat tttcggcacg
     3481 atctttcgct gagttcgcca gtttttctgc ttgtttgcta tcttcctgag gatcgggcag
     3541 gcgtggtagc gtgcctttaa tcgggcgggt ctggatttca ctattatcac aaagaataaa
     3601 ccgctctggc gaaaggctta aaattgcacc ctgttcaaga cgtaaaaaag cgctaaatgg
     3661 cgcgcggttg gcctgattaa gctgaaggaa tgcctgccat tcatcgccag aataggtcgc
     3721 atgaaaacgc tgggcgagat tcacctgata gcaatcaccg ctgtgcagat attcctgtac
     3781 ctggcgaaat ttttcgccgt actgctcgcg ggtcatattg gattgccagt cggaagtgag
     3841 cgtgaaatct tcctgcggcg agaattgctg gctttccagc caggcccgac gggcattgac
     3901 atcattatga ctcagcaaag aaactgtatg acgctggtgg tcgacaatga gcgcccaatc
     3961 gtagataccc actgccatat ccggcagaac gatatcttgt tccgcaattt ctggcagtga
     4021 ctcaaaacgg cggcccagat cgtagccaaa caaccccagt gcgccgccct gaaatggcaa
     4081 atcttcgtta tgcgttgggc gaatgtctgc gcgatccagc acctgctgga gcacctgtag
     4141 cgggtcatca gtggtcgttg tgcgtttttc gctttcacta acaacggttt ctttaccgaa
     4201 agtggttaaa gtgcaaatcg gctcggcgac cacaatatca aagcggctat acggatgatc
     4261 ggcatagccg gagtgtaaaa gcatcgccca cggcaggtgg cttaagcggg agaaataaaa
     4321 ttcagcggcg tcctgacgcc agggtaaagt aatcacagcg ggagataacg tcttcatcag
     4381 tcctgactct actggctatg tgccgggtag catgaaataa ttagcgccaa caatttagca
     4441 ggagttaaca atgtttgcag gtttaccttc actcacccat gaacagcagc aaaaagctgt
     4501 cgagcggatc caggaactga tggcacaagg gatgagcagc ggccaggcaa tcgcgctggt
     4561 ggcagaagag ctgcgtgcca accactccgg cgagcgaatc gtggcgcgtt ttgaggatga
     4621 agacgagtaa cacactaatc cgtatcgatt tcgttataga agccgat
//
LOCUS       DADMJB010000223         4643 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.226, whole genome shotgun sequence.
ACCESSION   DADMJB010000223 DADMJB010000000
VERSION     DADMJB010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4643
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.226"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(17..2296)
                     /gene="maeB"
                     /locus_tag="JN078_003878"
     CDS             complement(17..2296)
                     /gene="maeB"
                     /locus_tag="JN078_003878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxaloacetate-decarboxylating
                     malate dehydrogenase"
                     /protein_id="HAY9042904.1"
                     /translation="MDDQLKQSALDFHEFPVPGKIQVSPTKPLATQRDLALAYSPGVA
                     APCLEIEKDPLKAYKYTARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFKKFA
                     GIDVFDIEVDELDPDKFIEVVAALEPTFGGINLEDIKAPECFYIEQKLRERMNIPVFH
                     DDQHGTAIISTAAILNGLRVVEKNISDVRMVVSGAGAAAIACMNLLVALGLQKHNIVV
                     CDSKGVIYQGREPNMAETKAAYAVVDDGKRTLDDVIEGADIFLGCSGPKVLTQEMVKK
                     MARAPMILALANPEPEILPPLAKEVRPDAIICTGRSDYPNQVNNVLCFPFIFRGALDV
                     GATAINEEMKLAAVRAIAELAHAEQSEVVASAYGDQDLSFGPEYIIPKPFDPRLIVKI
                     APAVAKAAMESGVATRPIADFDVYIDKLTEFVYKTNLFMKPIFSQARKAPKRVVLPEG
                     EEARVLHATQELVTLGLAKPILIGRPNVIEMRIQKLGLQIKAGVDFEIVNNESDPRFK
                     EYWTEYFQIMKRRGVTQEQAQRALISNPTVIGAIMVQRGEADAMICGTVGDYHEHFSV
                     VKNVFGYRDGVHTAGAMNALLLPSGNTFIADTYVNDEPDAEELAEITLMAAETVRRFG
                     IEPRVALLSHSNFGSSDCPSSSKMRQALELVRDRAPDLMIDGEMHGDAALVEAIRNDR
                     MPDSPLKGSANILVMPNMEAARISYNLLRVSSSEGVTVGPVLMGVAKPVHVLTPIASV
                     RRIVNMVALAVVEAQTQPL"
     gene            2585..3535
                     /gene="tal"
                     /locus_tag="JN078_003879"
     CDS             2585..3535
                     /gene="tal"
                     /locus_tag="JN078_003879"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HAY9042905.1"
                     /translation="MNELDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGL
                     SQYEHLIDDAIAWGKKNGKTQEQQVVAACDKLAVNFGAEILKIVPGRVSTEVDARLSF
                     DKEKSIEKARHLVDLYQQQGVEKSRILIKLASTWEGISAAEELEKEGINCNLTLLFSF
                     AQARACAEAGVFLISPFVGRIYDWYQARKPMAPYVVEEDPGVKSVRNIYDYYKQHHYE
                     TIVMGASFRRTEQILALTGCDRLTIAPNLLKELQEKVSPVVRKLIPPSQTFPRPAPMS
                     EAEFRWEHNQDAMAVEKLSEGIRLFAVDQRKLEDLLAAKL"
     gene            3555..>4643
                     /locus_tag="JN078_003880"
     CDS             3555..>4643
                     /locus_tag="JN078_003880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HAY9042906.1"
                     /translation="MSRKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFL
                     KHNPTDPTGYDRDRFILSNGHASMLLYSLLHLTGYDLPLEELKNFRQLHSKTPGHPEI
                     GYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNQPDHEIVDHFTYVFMGDGCLMEG
                     ISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGH
                     DPQAVKEAILEAQSVKDKPSLIICRTVIGFGSPNKAGKEEAHGAPLGEEEVALARQKL
                     GWHHPPFEIPKEIYHAWDAREKGEKAQQSWNEKFAAYKKAHPQLAEEFTRRMSGGLPK
                     DWEKTTQKYINELQANPAKIATRKASQNT"
BASE COUNT         1138 a         1242 c         1188 g         1075 t
ORIGIN      
        1 gagagttaaa aaagaattac agcggttggg tttgcgcttc aaccacggcc agcgccacca
       61 tgttgacgat acgacgcacc gatgcgatcg gcgttaacac gtgaaccggt ttcgccacgc
      121 ccatcagcac cggaccgaca gtcacacctt ccgagctgga aacgcgcagt aagttgtaac
      181 taatgcgggc agcttccatg ttcggcatca ccagaatatt ggcagaacct ttcaaagggc
      241 tgtccggcat acggtcgttg cgaatcgctt ccaccagcgc tgcatcgccg tgcatttcac
      301 catcaatcat cagatctggc gcacgatccc tgaccagttc cagcgcctga cgcattttgc
      361 tcgacgacgg gcagtcagaa gaaccaaagt tggagtgcga caacagagca acgcgcggct
      421 caataccaaa acgacggaca gtttctgccg ccatcaaggt gatctccgcc agctcttctg
      481 cgtctggttc gtcattgacg taggtatcgg caataaaggt gttaccactc ggcagcagca
      541 gcgcgttcat tgcacctgcg gtgtgaacgc catcgcgata accaaagaca tttttcacca
      601 cgctaaaatg ttcatgataa tcgcccaccg taccgcagat cattgcatcg gcttccccac
      661 gctgaaccat gatcgcgccg atcactgtcg ggttactgat cagcgcccgc tgcgcctgtt
      721 cctgagtgac accgcgacgc ttcatgatct ggaagtattc ggtccagtac tctttaaagc
      781 gcggatcgga ttcgttattg acgatctcaa aatcaacgcc cgctttgatc tgcaagccca
      841 gtttctgaat gcgcatttcg atcacgttcg gacgaccgat aaggatcggt ttcgccagtc
      901 ccagcgttac cagttcctga gtggcatgca gaacgcgcgc ctcttcccct tctggcagaa
      961 caacgcgctt cggcgctttg cgagcctggg agaaaatcgg cttcataaac aggttggttt
     1021 tgtaaacgaa ctcagtcagc ttgtcgatgt agacgtcgaa atcagcaatc ggacgcgtcg
     1081 ccacgcccga ctccatcgcg gctttagcga ccgcaggagc gatcttaacg atcaagcgcg
     1141 gatcaaacgg ttttggaatg atgtattccg gaccaaagct cagatcctga tcgccatacg
     1201 ctgaagccac cacttcgctc tgttccgcat gggcgagttc tgcaatcgca cgtaccgccg
     1261 ccagtttcat ctcttcgttg atggcggttg cgccaacgtc cagcgcgcca cggaagatga
     1321 acgggaagca caggacgttg ttcacctggt tcggatagtc agaacgaccg gtgcaaatga
     1381 tggcatccgg acgcacttct ttcgccagcg gcggcagaat ttccggttcc gggttcgcca
     1441 gcgccaggat cattggcgca cgagccattt tcttcaccat ttcctgggtc agcactttcg
     1501 ggccggaaca tccgaggaaa atatccgcgc cttcaatcac atcatcgagg gtacgtttgc
     1561 cgtcgtccac caccgcatat gcggctttgg tttccgccat gtttggctca cggccctgat
     1621 agataacgcc ttttgaatcg caaaccacga tgttatgttt ttgcagaccc agcgctacca
     1681 gcaggttcat acaggcgatt gctgcggcac ccgcgccgga aaccaccatc cgcacgtcgg
     1741 agatgttttt ctccaccacg cgcaagccgt tgaggatggc ggcagtgctg atgattgccg
     1801 tgccgtgctg atcgtcgtgg aataccggaa tattcatccg ctcgcgcagt ttctgttcaa
     1861 tatagaaaca ttctggcgct ttaatgtctt cgaggttgat tccgccgaag gtcggttcga
     1921 gcgcagcgac aacttcaata aatttgtccg ggtcgagttc atcaacttca atgtcaaata
     1981 catcaatccc ggcgaatttc ttaaacagaa cgcccttgcc ttccatcacc ggtttgccag
     2041 ccagcgcgcc aatgttgcct aaccccagca ccgccgtacc gttagagatc accgccacca
     2101 ggttaccgcg cgcggtatat ttgtaggctt ttaacgggtc tttttcgatt tcaagacaag
     2161 gtgcggcaac gcctggtgag taggccagcg ccagatcgcg ctgcgttgcc agaggcttgg
     2221 ttggagaaac ctggattttc cctggaactg gaaattcatg gaaatcaagt gcactttgtt
     2281 ttaactggtc atccatttgg ttgttccttt cacgtaacgt tcacaaataa agtgtgtggg
     2341 caacagcccc tgcccacaac gtggcgcaca ttattacccc gccggagtct acagactttg
     2401 agcaagtcca aactctcacc attaatataa tgttttggta ataatcctat aacactgatg
     2461 ttacctgctt aatccagcaa taccatgcct gtctgctatg cttttttgat gcgtttagcg
     2521 aaatttctca gaagtgtgaa ttaacgcact catctaacac tttacttttc aaggagtatt
     2581 tcctatgaac gagttagacg gcatcaaaca gttcaccact gtcgtggcag acagcggcga
     2641 tattgagtcc attcgccatt atcatcccca ggatgccacc accaatcctt cgctgttgct
     2701 caaggctgcc ggattatcac aatatgagca tttaatagac gatgctatcg cctggggtaa
     2761 aaaaaatggc aagacccagg aacaacaggt ggtcgcagcg tgtgacaaac tggcggtcaa
     2821 tttcggtgct gaaattctca aaatcgtacc cggtcgcgtg tcaacagaag ttgatgcacg
     2881 cctctctttt gataaagaaa agagtattga gaaggcgcgc catctggtgg acttgtatca
     2941 gcaacaaggc gttgagaaat cacgcattct gatcaaactg gcttcgacct gggaaggaat
     3001 tagcgcggca gaagagctgg aaaaagaagg tattaactgc aacctgacgc tgctgttttc
     3061 ttttgcccag gcgcgggcct gtgcggaagc aggcgttttt ctgatttcgc cgtttgtcgg
     3121 gcgtatttat gactggtatc aggcacgcaa gccgatggcc ccgtatgtgg tggaagaaga
     3181 tccgggcgtt aaatcggtgc gcaatatcta cgactactat aagcaacacc actatgaaac
     3241 cattgtgatg ggcgcgagct tccgtcgcac cgaacaaatc ctcgccttaa ccggctgcga
     3301 tcgactgact atcgcaccga atttgctgaa ggagctgcag gaaaaagttt cgccagtggt
     3361 acgtaaatta atcccacctt ctcagacgtt cccacgccca gctcccatga gcgaagcgga
     3421 gttccgttgg gagcacaatc aggatgcgat ggcggtagaa aaactgtctg aaggcattcg
     3481 tctgttcgcc gttgatcaac gcaaactgga agatcttctt gccgccaaac tataaaccag
     3541 ccacggagtg ttatatgtcc cgaaaagacc ttgccaatgc gattcgcgca ctcagtatgg
     3601 atgcggtaca aaaagccaac tctggtcatc ccggcgcgcc gatgggcatg gctgatattg
     3661 ccgaagtgct gtggaacgat tttcttaaac ataaccctac cgacccaacc gggtatgatc
     3721 gcgaccgctt tattctttcc aacggtcacg cgtcgatgct gctctacagt ttgctgcatc
     3781 tgaccggtta cgacctgccg ctggaagagc tgaagaactt ccgtcagttg cattcgaaaa
     3841 ccccaggcca cccggagatt ggttatacgc ccggtgttga aaccaccacc ggtccacttg
     3901 gacaaggttt ggcgaacgcc gtcggactgg cgatagcaga gcgtacactg gcggcgcagt
     3961 ttaatcagcc ggatcatgaa attgtcgatc acttcaccta tgtgtttatg ggcgacggct
     4021 gcctgatgga aggtatttcc cacgaagtct gttcgctggc gggcacgcta ggactgggca
     4081 agctgattgg tttttacgat cacaacggta tttcgattga tggagaaacc gaaggctggt
     4141 ttaccgacga tacggcaaaa cgttttgaag cctatcactg gcatgtgatc catgaaatcg
     4201 acggtcacga tccgcaggcg gtgaaggaag cgatccttga agcgcaaagc gtgaaagata
     4261 agccgtcgct gattatctgc cgtacggtga ttggctttgg ttcgccgaat aaagcaggta
     4321 aggaagaggc gcacggcgca ccactggggg aagaagaagt ggcgctggca cggcaaaaac
     4381 tgggctggca ccatccgcca tttgagatcc ctaaagagat ttatcacgcc tgggatgccc
     4441 gtgaaaaagg cgaaaaagcg cagcagagct ggaatgagaa gtttgccgcc tataaaaagg
     4501 ctcatccgca actggcagaa gagtttaccc gacggatgag cggtggttta ccgaaggact
     4561 gggagaaaac gactcagaaa tatatcaatg agttacaggc aaatccggcg aaaatcgcta
     4621 cccgtaaggc ttcgcaaaat acg
//
LOCUS       DADMJB010000224         4585 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.227, whole genome shotgun sequence.
ACCESSION   DADMJB010000224 DADMJB010000000
VERSION     DADMJB010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4585)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4585)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4585
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.227"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            250..615
                     /gene="queD"
                     /locus_tag="JN078_003881"
     CDS             250..615
                     /gene="queD"
                     /locus_tag="JN078_003881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HAY9042907.1"
                     /translation="MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGE
                     VDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPL
                     LSAVMVKETCTAGCIYRGE"
     gene            693..1961
                     /locus_tag="JN078_003882"
     CDS             693..1961
                     /locus_tag="JN078_003882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HAY9042908.1"
                     /translation="MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNL
                     SGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRA
                     RFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVL
                     AERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGA
                     FLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVP
                     EGGLHSMPVQYAGNGWQLVGDALRSCVNTGISVRGMGMALTGAQAAQTLISACQHREP
                     QNLFALYHHNVERSLLWDVLQRYQHVPALLQRPSWYRAWPALMQDISRDLWDQGDKPV
                     PPLRQLFWRHLRRHGLWHLAGDVIRSLRCL"
     gene            1952..2212
                     /locus_tag="JN078_003883"
     CDS             1952..2212
                     /locus_tag="JN078_003883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HAY9042909.1"
                     /translation="MSVAHNLWRVADAPHIVPADSVERQMVQWLINACPAGLFSLTPE
                     GDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG"
     gene            2229..2804
                     /locus_tag="JN078_003884"
     CDS             2229..2804
                     /locus_tag="JN078_003884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate responsive antiterminator"
                     /protein_id="HAY9042910.1"
                     /translation="MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTIS
                     NIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGF
                     FCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVC
                     DEEDACNAINAGVVALSTTNTGVWTLAKKLL"
     gene            complement(2952..3812)
                     /locus_tag="JN078_003885"
                     /pseudo
     CDS             complement(2952..3812)
                     /locus_tag="JN078_003885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417249.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
     gene            complement(3809..>4585)
                     /locus_tag="JN078_003886"
     CDS             complement(3809..>4585)
                     /locus_tag="JN078_003886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HAY9042911.1"
                     /translation="NILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQ
                     AAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEF
                     VARHIAEWQHQNPLDLIITGSQSSEGQNGQTPFLLAEMLGWTCFTQVERFTLDALFIT
                     LEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAM
                     QCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP"
BASE COUNT         1055 a         1233 c         1165 g         1132 t
ORIGIN      
        1 agataaggtt aacggggtga acggtgtgga ttaaagacgg gatagcgata actaataacc
       61 aaatcgacta acctgtttta gcaatagtct ttaacaacaa aatagattaa ccaacccaat
      121 gaaaaacaaa tgaatttagc caatcattaa gataaatcag cgattttgcg caacaaagtc
      181 gttttagata atgcgaaaaa acagcctttc cggtactcta cggcggtttt atcgtcctgt
      241 agagaaatta tgatgtccac cacgttattt aaagatttca ccttcgaagc cgctcaccgc
      301 ttaccacacg tcccggaagg gcataaatgt ggtcgcctgc acgggcattc ctttatggtg
      361 cgactggaaa ttaccgggga agtcgatccg catacgggct ggattatcga tttcgctgaa
      421 ctaaaagcgg cgtttaagcc aacttatgag cgcctcgatc accattatct caatgatatt
      481 ccaggtctgg aaaacccaac tagcgaagtt ttagcaaaat ggatttggga tcaggttaaa
      541 cccgttgtgc cgctgttaag tgcggtgatg gtaaaagaaa cctgcaccgc tggttgtatc
      601 tatcgcggcg aatgataaga gtgtgtcggc ggtcaatttc ccttaagtaa cgctatgtta
      661 gggtattgtg ttcaggatat ctggggcatg acatggaaga cgactgcgac attattatta
      721 ttggtgccgg tattgcaggc accgcttgcg cgttacgctg cgcgcgagcg ggtttatccg
      781 ttttgttact ggaacgcgct gaaatccccg gcagcaaaaa tctttccggc ggacggttat
      841 atacccatgc actcgcggaa ctcctccctc agtttcatct gaccgcgcct cttgaacgac
      901 gcatcactca cgaaagcctt tccctgttaa cgcccgatgg cgtaacgacg ttttccagct
      961 tacagcccgg cggtgaatcc tggagtgtat tacgtgcacg gttcgatccg tggctggttg
     1021 ccgaagccga aaaagaaggt gtcgaatgta tccccggagc gacggtggat gcactgtatg
     1081 aagaaaacgg cagagtctgt ggcgttattt gtggtgacga tattctccgc gcccgttatg
     1141 tggtgctggc agaaggtgcc aacagcgtcc tggctgaacg tcacgggtta gtgactcgtc
     1201 ctgctggcga agcgatggcg ttggggatca aagaagtgct gtcgctggaa acatccgcta
     1261 ttgaagaacg ttttcatctg gagaataacg aaggcgcagc gttgctgttc agcggcggaa
     1321 tctgtgatga cttacccggc ggcgcatttc tttatactaa tcaacaaacg ctctcgttag
     1381 ggattgtttg cccgctctct tcccttacgc aaagtcgtgt tccggcaagc gagctgctga
     1441 ctcgctttaa agcgcatccg gcagtgcgcc cgcttatcaa aaacacggaa tcactggagt
     1501 atggtgcgca tctggtgcca gaaggtggct tgcacagtat gccggtgcaa tacgccggta
     1561 acggctggca gctggtgggc gatgcgttgc gcagttgcgt caataccgga atttccgtgc
     1621 gcggcatggg tatggcgctg actggcgcgc aggcggcaca aacgctgata agcgcctgcc
     1681 agcaccgcga gccgcaaaat ctgtttgcgc tttatcatca caacgtagag cgcagcctgc
     1741 tatgggatgt tctacaacgt tatcagcatg ttccggcgct tttgcaacgc cctagctggt
     1801 atcgggcgtg gcctgcgtta atgcaggata tttcccgcga tttatgggat cagggtgata
     1861 aacctgttcc accgctgcgc cagttattct ggcgtcattt acgtcgtcat ggcctgtggc
     1921 atctggcggg cgatgttatc aggagtctgc gatgtctgta gcccataatc tctggcgcgt
     1981 tgctgatgcg ccgcacattg ttccggctga ctccgttgag cgtcagatgg tacaatggtt
     2041 gattaacgcc tgtccggcag gtcttttttc gctcacaccg gaaggtgact tacgcgttga
     2101 ttatcacggc tgcctggagt gtggcacctg ccgtttgctg tgcgacgaat ccacactaca
     2161 acagtggcgc tatccgcctt ccggattcgg catcacctac cgctttggat aaataataag
     2221 gataatttat gcccctctta cacctgctcc gccagaatcc ggtgattgct gccgttaaag
     2281 ataatgccag cctgcaactg gcaatcgact ctgaatgcca gtttatttcc gtgttgtacg
     2341 gcaatatctg caccatcagt aatatcgtta aaaagattaa gaacgccggg aaatatgctt
     2401 ttattcatgt tgatttgctg gaaggcgcgt caaataaaga agtcgtgatt cagtttttga
     2461 aactggtgac cgaggcggac ggcattatca gtaccaaagc ctcaatgttg aaagcggcaa
     2521 gagcggaagg ttttttctgt attcatcgcc tgtttattgt tgattcaatt tcgtttcaca
     2581 acattgataa gcaagttgcg caatcgaatc cggattgtat tgagatcctg ccaggctgta
     2641 tgcccaaagt gctgggctgg gtgacagaga aaatccgcca accgctgatt gccggtgggc
     2701 tggtgtgcga tgaagaagat gcgtgtaatg cgattaacgc gggtgtcgtg gcgctttcca
     2761 ccacgaatac cggggtctgg acgttagcga aaaaattact ttgacgggat aatcgtaacc
     2821 aattgaattt ggtttgattt gtaggccgca cgccacatcc gacattcagc gcctgatgcg
     2881 acgcttgacg cgtcttatca ggcctacaag tccccaggcc agaaccgtag gcaggatcat
     2941 ccggcaacac attattggca atctgcgtga atgtttgtca ccagtgcctc cagcaccact
     3001 ttccagtcat caaccacgcc aacatctgcc tgtgaaaata ccgcagcgct ggcgtcatga
     3061 ttaatcgcca ccacaaactt gctattgcgt acgcccgcca ttaacgctgc tgcgccggaa
     3121 gcgccaacaa caatacacac ctcaggtgcc agcaaatgtc cggaaatacc aatcactttt
     3181 tcagcatcaa cgccaccgtt catcactcgc gcccgactgt agcccacttc ggctcccagc
     3241 ttttctgcca gcatagcgat ttcctggtta tctgcctctc cgccctgccc caccaccagc
     3301 acccgtctgg cctcagctaa tgggtcgcga gtaacatttt tcagatccta tgtgctaacc
     3361 agccagtcgg gaagcgcacc cgggacaatg ttcagttgtt gtattccaga gggcaacgtg
     3421 gcgtttttcg ctgctcccgc ctgacgcgcc agagaaaggc atagcgggcg tttttctgtt
     3481 tgcagcgtcg ccgttagcgc atttccccag tgggatttgc gcacgcttac ggttggaata
     3541 tctaacgaag tcacctggca gatgcttgca ccatgtaaac gccaggccag ccgggtcgac
     3601 agttcatcgc caaacgttcc cggcggaaag agaacaacgt ccgcaggcgt tcgctgccac
     3661 tgttccacca acgcatccag cacctgttcc gccactacag gctgaggttc aatctgccag
     3721 tgcgccaggg tacaaccact gaaatcctgc gccgccagcc agcttgctat tgcggcattc
     3781 tcctgattta ttgtcacaat tgcgatattc atggctgcat cctttggcgt aaatagtcct
     3841 gccatagctt ttgagctttt tctgctaccg tttgcccatc aatcagcgtc gctccgcgtc
     3901 gttgctctgc tcttgccagt tgcagacact gcatcgctgg catttcggca gcaacagttt
     3961 tacggataat ttctgctttc cccgcagcca ttcgctggcg cattcccggt actggcaagg
     4021 ccacttcacc gcactgacgc acggcaatca ccgcaggcaa gcgaacccgg caacaacgca
     4081 acccatgttc agtacgctgt tcgagggtga taaacagcgc gtcgagagtg aaacgctcca
     4141 cctgggtgaa gcaggtccag cccagcattt ccgccagcaa aaatggcgtt tgcccattct
     4201 gcccttcgct gctttggctg ccggtaatta tcagatccag cggattctga tgctgccatt
     4261 cggcaatatg gcgagcgaca aattccggcg caaagcgcag atctgccgcc gtctccagca
     4321 atacagcttc ctcaaaccca agagccatga gatagcgcag ccagtgcaat gcccgttcat
     4381 cccccatgct caacgcggtt aaagacatcg gcgtaccgtt ttttctctgc gccaacagca
     4441 gcgcggcagc ggcctgttca tcagcaccga gtaaacttcg cagtagcgaa atatccggtc
     4501 cgcttttacc ctgagccgcc gcctgccact ctttttccgc cagcattccg gcatccggtt
     4561 cggctttaaa cgctaacaga atgtt
//
LOCUS       DADMJB010000225         4436 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.228, whole genome shotgun sequence.
ACCESSION   DADMJB010000225 DADMJB010000000
VERSION     DADMJB010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4436)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4436)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4436
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.228"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..1088
                     /gene="nadB"
                     /locus_tag="JN078_003887"
     CDS             <1..1088
                     /gene="nadB"
                     /locus_tag="JN078_003887"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HAY9042912.1"
                     /translation="VGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGD
                     GIAMAWRAGCRVANLEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDF
                     DERGELAPRDIVARAIDHEMKRLGADCMFLDISHKPADFIRQHFPMIYEKLLGLGIDL
                     TQEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLV
                     YGWSAAEDITRRMPDAHGVSTLPPWDESRVENPDERVVIQHNWHELRLFMWDYVGIVR
                     TTKRLERALRRINMLQQEIDEYYAHFRVSNNLLELRNLVQVAELIVRCAMMRKESRGL
                     HFTLDYPELLTHSGPSILSPGNHYINR"
     gene            complement(1073..1810)
                     /gene="trmN"
                     /locus_tag="JN078_003888"
     CDS             complement(1073..1810)
                     /gene="trmN"
                     /locus_tag="JN078_003888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417070.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(1)(Val)
                     (adenine(37)-N(6))-methyltransferase TrmN"
                     /protein_id="HAY9042913.1"
                     /translation="MSQSTSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAG
                     VKRCLDIGAGSGLLALMLAQRTSDSVIIDAVELESEAAAQAQENINQSPWAERINVHT
                     ADIQQWLTQQTVRFDLIISNPPYYQQGVECAIPQREQARYTTTLDHPSLLTCAAECIT
                     EEGFFCVVLPEQIGNGFTELALSMGWHLRLRTDVAENEARLPHRVLLAFSPQAGECFS
                     DRLVIRGPDQNYSEAYTALTQAFYLFM"
     gene            1942..3276
                     /gene="srmB"
                     /locus_tag="JN078_003889"
     CDS             1942..3276
                     /gene="srmB"
                     /locus_tag="JN078_003889"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase SrmB"
                     /protein_id="HAY9042914.1"
                     /translation="MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDV
                     LGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKH
                     THLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEAD
                     RMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRE
                     RKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNC
                     YLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLH
                     RIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIEELRPKTRTPSEKQTG
                     KPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE"
     gene            complement(3485..4366)
                     /locus_tag="JN078_003890"
     CDS             complement(3485..4366)
                     /locus_tag="JN078_003890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311470.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY9042915.1"
                     /translation="MDLRRFITLKTVVEEGSFLRASQKLCCTQSTVTFHIQQLEQEFS
                     VQLFEKIGRRMCLTREGKKLLPHIYELTRVMDTLREAAKKGSDPDGELRVVSGETLLS
                     YRMPQVLQRFRQRAPKVRLSLQSLNCYVIRDALLNDEADVGVFYRVGNDDALNRRELG
                     EQSLVLVASPQIADVDFTEPGRHNACSFIINEPQCVFRQIFESTLRQRRITVENTIEL
                     LSIESIKRCVAANIGVSYLPRFAVEKELESGELIELPFGEQSQTITAMCAHHAGKAVS
                     PAMHTFIQCIEECFLPG"
BASE COUNT         1125 a         1209 c         1125 g          977 t
ORIGIN      
        1 ttgtaggcgc gtgggtatgg aaccgaaata aagaaacggt ggaaacctgc cacgcaaaag
       61 cagtggtact ggcaaccggc ggtgcgtcga aggtgtatca gtacaccacc aatccggata
      121 tttcttctgg cgatggcatt gctatggcgt ggcgcgcggg ctgtcgggtt gccaatctcg
      181 aatttaatca gttccaccct accgcactgt atcacccaca ggcacgcaat ttcctgttaa
      241 cggaagcact gcgcggcgaa ggcgcttatc tcaagcgccc ggatggcacg cgttttatgc
      301 ccgattttga tgagcgcggc gaactggccc cgcgcgatat tgtcgcccgc gccattgacc
      361 atgaaatgaa acgcctcggc gcagattgta tgttcctcga catcagccat aagcccgccg
      421 attttattcg ccagcatttc ccgatgattt atgaaaaatt gctcgggctg gggattgatc
      481 tcacacaaga accggtaccg attgtgcctg ctgcacacta tacctgcggt ggtgtaatgg
      541 ttgatgatca tgggcgtacg gacgtcgagg gcttgtatgc cattggcgag gtgagttata
      601 ccggcttaca cggcgctaac cgcatggcct cgaattcatt gctggagtgt ctggtctatg
      661 gctggtcggc ggcagaagat atcaccagac gtatgcctga tgcccacggc gtcagtacgt
      721 taccaccgtg ggatgaaagc cgcgttgaga accctgacga acgggtagta attcagcata
      781 actggcacga gctacggctg tttatgtggg attacgtcgg cattgtgcgc acaacaaaac
      841 gtcttgagcg cgccctgcgg cgtatcaata tgttgcaaca ggaaatagac gaatattacg
      901 cccacttccg cgtgtcgaat aatttgctgg agctgcgtaa tctggtgcag gttgcggaat
      961 tgattgttcg ctgtgccatg atgcgcaagg agagtcgtgg cctgcatttc acactggatt
     1021 atccggaact gctcacccat tccggtccgt cgatcctttc ccccggcaat cattacataa
     1081 acagataaaa agcctgggtc agcgccgtat acgcttcgga atagttctgg tctggcccac
     1141 gaatgactaa gcgatcgcta aagcattctc ccgcctgcgg ggagaatgcc agcagcaccc
     1201 gatgcggcag tcgcgcttcg ttttccgcca catccgtccg caaacgtaaa tgccagccca
     1261 tgcttaatgc cagctccgta aaaccattac caatctgctc tggcagcact acgcagaaaa
     1321 atccctcttc ggtaatgcac tccgccgcac aggtcagcag cgatgggtga tcaagcgtag
     1381 tggtatagcg agcctgttcc cgttgaggga tcgcgcactc tactccctgc tgatagtaag
     1441 gtgggttact gatgattaaa tcgaagcgta ctgtctgctg tgtgagccac tgctgaatat
     1501 ccgccgtatg gacgttaatc cgctctgccc acggggactg gttgatattt tcctgcgcct
     1561 gcgcggcagc ttcactttcc agctcaacgg catcaattat cacgctgtca ctggttcgct
     1621 gcgccagcat cagtgccagc aacccgctac ccgcgccgat atcaaggcaa cgtttcaccc
     1681 cagccaccgg tgcccatgcg cccagcaaaa tgccatccgt tcccactttc atcgcacagc
     1741 gatcgtgagc aacaaaaaac tgtttaaaag taaatccatt acgacgaagc acggatgtag
     1801 actgtgacat gaaaataaaa ccttgcagga aaaacggcga tagcaccggg tgagaacaat
     1861 acccgagaag cgatatccat acaaacagat gaagattgca gccgtaacgt ctataatcag
     1921 cgccccacac agaggtagaa catgactgta acgacttttt ccgaacttga actcgacgaa
     1981 agcctgctgg aagccctcca ggataaaggt ttcactcgcc cgaccgccat tcaggctgcc
     2041 gccattccgc ctgcgctcga tggccgtgat gtactcggtt ctgcgccgac aggcaccggt
     2101 aaaacggcgg cgtatctgct gccagcgttg cagcacctgc tcgatttccc gcgtaagaaa
     2161 tccggtccgc cgcgtatttt gatcctcacc ccaactcgcg agctggcgat gcaggtggcc
     2221 gatcatgccc gcgaactggc gaaacatacg catctggata tcgccaccat taccggcggc
     2281 gtagcctata tgaaccacgc ggaagtgttc agcgaaaatc aggacatcgt ggtcgccacg
     2341 accggacgtc tgctgcaata cataaaagaa gagaacttcg attgccgcgc ggttgaaacg
     2401 ctgatcctcg acgaagcaga ccgtatgctg gatatgggct tcgctcagga tatcgaacat
     2461 attgctggcg aaacgcgctg gcgtaaacag accctgctct tttcggcaac gctggaaggc
     2521 gatgcgattc aggactttgc cgagcgtctg ctggaagatc cggtggaggt ttctgccaat
     2581 ccgtccaccc gtgagcgcaa aaaaattcat cagtggtatt accgcgccga tgacctggaa
     2641 cataaaaccg cattgctggt gcatctgtta aaacagccgg aagcgacccg ctcaattgtg
     2701 tttgtgcgta agcgtgaacg tgtgcatgag ctggcaaact ggctgcgcga agcgggcatc
     2761 aacaactgct atctcgaagg tgagatggta cagggcaagc gtaatgaagc gattaaacgc
     2821 ctgaccgaag gccgcgtaaa cgtactggta gcaaccgatg ttgccgcgcg cggtatcgac
     2881 attccagacg tcagccacgt ctttaacttc gatatgccgc gcagtggtga tacttatttg
     2941 caccgtatcg gacgtaccgc gcgcgccggt cgtaaaggca ccgcgatttc gctggtggaa
     3001 gcccatgacc atctgctgct tggcaaagtt ggccgttata ttgaagagcc gataaaagct
     3061 cgcgtcattg aggaactacg cccgaaaacg cgtacgccaa gcgagaagca gaccggcaag
     3121 ccatcgaaga aagtactggc aaaacgcgcc gagaagaaaa aagctaaaga gaaagagaag
     3181 ccgcgggtga aaaaacgcca tcgcgacacc aaaaatattg gtaagcgccg taaaccgagc
     3241 ggaacgggcg tgccaccgca aacgacagaa gagtaatctt aattccgggt ttaagcccgg
     3301 aattaaaagt gctggcaaac gcaaaactgc ctgatgcgct acgcttatca ggcctacatg
     3361 gctcatgcaa tatattgaat ttgcacgatc ttgtaggccg gataaggcgt tcacgccgca
     3421 tccggcatga acaaaacgca cttcgtcgac aagttgggtg ccgggtttaa gcccggcatt
     3481 atttttatcc cggcaaaaaa cactcttcaa tacactgaat aaaagtgtgc atcgccgggc
     3541 taaccgcttt tccagcatgg tgtgcgcaca tagccgtaat ggtctgcgac tgttcgccaa
     3601 aaggcaattc aattaattct ccgctctcaa gctctttttc caccgcaaag cggggcaagt
     3661 aactgacacc gatattcgcc gcgacacaac gtttgatact ttcaatgctt aacagctcaa
     3721 tggtgttttc caccgtgatc cgccgctgac gcagcgtgct ctcaaatatc tgccggaaga
     3781 cacattgcgg ttcgttgata ataaagctac aggcgttatg tcttcccggc tcagtaaaat
     3841 cgacatctgc aatttgcggt gaagccacca gcaccagcga ttgttcaccc aactctcgtc
     3901 ggttcagggc atcatcattc cctacgcgat aaaagacgcc gacatcggcc tcatcattca
     3961 gtagcgcatc acggatcacg taacagttca gcgactgcaa cgataaacgc acttttggtg
     4021 cgcgttgccg aaaacgctgc aacacctgcg gcattcggta agagagcaac gtttcgcccg
     4081 aaacaacgcg tagttccccg tccggatctg accccttttt ggcagcctca cgaagcgtat
     4141 ccatcactcg ggtaagttca taaatgtgcg gcagcaactt ttttccttcg cgggtaaggc
     4201 acatccgtcg gccaattttc tcaaataact ggactgaaaa ctcctgctca agctgctgaa
     4261 tatgaaaagt caccgtcgat tgtgtacagc acaatttttg cgaagctcgc aaaaaggaac
     4321 cctcttccac cacggtttta agcgtaataa aacggcgcag atccataacc ccgaacctat
     4381 cgaaaatatc gaatctagaa tataaaaaca ttcatttttt taaatgttct gtgtcg
//
LOCUS       DADMJB010000226         4429 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.229, whole genome shotgun sequence.
ACCESSION   DADMJB010000226 DADMJB010000000
VERSION     DADMJB010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4429)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4429)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4429
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.229"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            127..456
                     /locus_tag="JN078_003891"
     CDS             127..456
                     /locus_tag="JN078_003891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311560.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF883 domain-containing protein"
                     /protein_id="HAY9042916.1"
                     /translation="MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAE
                     AARSKAQALLKETRARMHGRTRVQQAARDAVGCADSFVRERPWCSVGTAAAVGIFIGA
                     LLSMRKS"
     gene            704..949
                     /gene="nrdH"
                     /locus_tag="JN078_003892"
     CDS             704..949
                     /gene="nrdH"
                     /locus_tag="JN078_003892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin-like protein NrdH"
                     /protein_id="HAY9042917.1"
                     /translation="MRITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALR
                     AQGFRQLPVVIAGDLSWSGFRPDMINRLHPAPHAASA"
     gene            946..1356
                     /gene="nrdI"
                     /locus_tag="JN078_003893"
     CDS             946..1356
                     /gene="nrdI"
                     /locus_tag="JN078_003893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class Ib ribonucleoside-diphosphate reductase
                     assembly flavoprotein NrdI"
                     /protein_id="HAY9042918.1"
                     /translation="MSQLVYFSSSSENTQRFIERLGMPAVRIPLNERERIQVDEPYIL
                     IVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCG
                     VPWLYRFELMGTQSDIENVRKGVTEFWQRQPQNA"
     gene            1329..3473
                     /gene="nrdE"
                     /locus_tag="JN078_003894"
     CDS             1329..3473
                     /gene="nrdE"
                     /locus_tag="JN078_003894"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit alpha"
                     /protein_id="HAY9042919.1"
                     /translation="MATTTAECLTQETMDYHALNAMLNLYDSAGRIQFDKDRQAVDAF
                     MATHVRPNSVTFSSQQQRLNWLVNEGYYDESVLNRYSRDFVITLFAYAHTSGFRFQTF
                     LGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGDATLALQLTDEMLSGRFQPA
                     TPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAG
                     APIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKREN
                     ADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDVERVYGKPFADIAISEHYDEL
                     VADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPVAGRINMSNLCSEIL
                     QVNCASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSH
                     IRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRT
                     SMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMW
                     AQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPA
                     PFMTNENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIY
                     AWRKGIKTLYYIRLRQMALEGTEIEGCVSCAL"
     gene            3483..4397
                     /gene="nrdF"
                     /locus_tag="JN078_003895"
     CDS             3483..4397
                     /gene="nrdF"
                     /locus_tag="JN078_003895"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000777980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit beta"
                     /protein_id="HAY9042920.1"
                     /translation="MKLSRISAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPA
                     WQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPYALTPHEEAVLSNISFMEAVHA
                     RSYSSIFSTLCQTKDVDAAYAWSEENAPLQRKAQIIQQHYRGDDPLKKKIASVFLESF
                     LFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREEL
                     KSFAFDLLLELYDNELQYSDELYAETPWADDVKAFLCYNANKALMNLGYEPLFPAEMA
                     EVNPAILAALSPNADENHDFFSGSRIGN"
BASE COUNT         1095 a         1131 c         1129 g         1074 t
ORIGIN      
        1 cgggcctacc ttacctgatt gcgcattcac aacgctttca gaaaagtcca taaagccgcg
       61 atgaacctca gttaagaaaa ttatggtcta cactgaaaat tacatcgaat tctaatgggg
      121 gatcatatgt ttaaccgacc gaaccgcaac gacgttgatg atggcgtgca ggatatccag
      181 aatgatgtca atcaattagc tgacagcctc gaatctgtat tgaagtcctg gggcagcgac
      241 gccaaagggg aagctgaagc cgcacgcagt aaagctcagg cgttgctgaa agaaaccagg
      301 gcgcgaatgc atggtcgtac tcgcgtccag caagccgcgc gcgatgccgt tggctgcgcg
      361 gattcttttg ttcgtgaaag accctggtgt agcgtgggta cagcagctgc ggtaggtatt
      421 tttatcggcg cactgttaag catgcgcaaa tcgtagtgca aaaatgataa taaatacgcg
      481 tctttgaccc cgaagcctgt cttcggggtt tctttttgcc tggtgaatca caaaaatccc
      541 cctcccccgt cacgctcata tccagggtaa tttcgatcac tatttgctat atattgtgta
      601 gttgaatctt ttttcaacta catctagtat ctctgtatca acagagagac aacccgacgc
      661 gtatcatcgc gccgtatctt cattttaaac ggaaatacga atcatgcgca taactattta
      721 cactcgtaac gattgcgttc agtgccacgc caccaaacgg gcgatggaaa accgggggtt
      781 tgattttgaa atgattaatg tcgatcgcgt tcctgaagca gcggaagcgt tgcgtgctca
      841 gggctttcgt cagttgccgg tagtgattgc tggcgatctt agctggtctg gtttccgtcc
      901 ggacatgatt aaccgtctgc atccagcgcc acacgcggcc agtgcatgag ccagctcgtc
      961 tacttctcca gcagctccga aaacacgcag cgttttatcg aacgtttagg tatgcccgcg
     1021 gtgcgcatcc cgctcaatga gcgggaacgg attcaggtag acgagcctta catcctgatc
     1081 gtgccctctt acggcggcgg cggtacggct ggcgcggtgc cacgacaggt aattcgcttt
     1141 ttaaacgacg agcacaaccg ggcgttgctt cgcggcgtta ttgcttctgg taatcgcaac
     1201 tttggtgagg cgtatggccg cgccggagat gtgattgccc ggaaatgcgg cgtgccgtgg
     1261 ctgtaccgtt ttgaactcat gggtacgcaa agcgatatcg aaaacgttcg taaaggagta
     1321 accgaatttt ggcaacgaca accgcagaat gcctgacgca ggaaacgatg gattaccacg
     1381 cgctgaatgc gatgcttaac ctctacgata gcgcaggtcg cattcagttc gataaagacc
     1441 gccaggccgt tgacgccttt atggcgacgc atgtgcgtcc gaacagtgtg accttcagta
     1501 gccagcagca gcgcctgaac tggctggtca acgaaggtta ctatgatgaa agcgttctta
     1561 atcgctactc tcgcgacttt gtcattacgc tgtttgccta cgcacacacc agcggttttc
     1621 gtttccagac attcctcggg gcatggaagt tttacaccag ctatacgttg aagacattcg
     1681 acggtaaacg ttatctggaa gattttgccg atcgagtcac gatggtggcg ctgacgctgg
     1741 cacaaggcga tgcgacgctg gcgttgcaac tgaccgatga aatgctgtca ggacgctttc
     1801 agccagccac tccgacattc ctcaactgcg gtaagcagca gcgcggcgaa ctggtttcct
     1861 gttttctgct gcgtattgaa gacaatatgg agtcgattgg ccgggcggta aattccgcac
     1921 tgcaactgtc gaaacgcggc ggcggcgtgg catttttgct gtcgaatctg cgagaagcgg
     1981 gcgcgccaat taaacgtatt gaaaatcaat cttctggcgt aattccggtg atgaaaatgc
     2041 tggaagacgc attttcctat gccaaccaac tcggcgcgcg tcagggggca ggtgcagtct
     2101 atttacatgc tcatcatccc gatattctgc gttttctcga tacaaaacgg gaaaatgccg
     2161 acgaaaaaat ccgcattaaa acactgtcgc tgggcgtggt gatcccggat atcactttcc
     2221 atctggcaaa agagaatgcg cagatggcac tgttttcgcc ctatgacgtt gagcgagttt
     2281 atggcaagcc gtttgccgat atcgccatca gcgaacacta tgacgaactg gttgccgatg
     2341 aacgcatccg caaaaaatac ctcaacgccc gtgatttctt ccagcggctg gcagaaatcc
     2401 agtttgagtc cggctatccc tacatcatgt atgaagacac ggtaaaccgt gctaaccctg
     2461 tcgccgggcg cataaatatg agtaatctct gctcagagat tttgcaggtc aactgtgcct
     2521 cagagtatga cgagaatctc gactatgccc gcacaggcca tgatatctcc tgcaatttag
     2581 gttcgttgaa tattgcgcac accatggatt cccccgattt tgcccgcacg gtagagactg
     2641 ccgtgcgcgg tttaacggcg gtgtcagata tgagtcatat ccgcagcgtg ccgtccatcg
     2701 aagccggaaa tgccgcctca cacgccatcg gactggggca gatgaattta cacggctatc
     2761 tggcgcgaga aggcatcgct tatggttcgc cggaagcact ggatttcacc aatctctatt
     2821 tctatgccat cacctggcac gcactgcgta cctcgatgtt gctggcgcgc gaacgcggtg
     2881 aaaccttcgc cgggttcaaa cagtcacgtt atgccagtgg tgaatatttt agccaatatc
     2941 tgcaaggtaa ctggcagccg aaaacggcga aagttggcga actgtttgcc cgcagcggta
     3001 ttacgttacc tacccgtgag atgtgggcgc aactgcgcga cgacgtgatg cgctacggca
     3061 tttataacca gaatcttcag gcggtgccgc caaccggttc tatctcttat atcaaccatg
     3121 ctacgtcgag tattcatccg attgtggcga aagtagagat acgcaaagag ggcaaaacag
     3181 gacgcgttta ctaccctgcc ccgtttatga ctaacgagaa tctggcgctg tatcaggatg
     3241 cttacgaaat cggcgcagaa aagatcatcg acacctacgc cgaagcgact cgccatgtcg
     3301 atcaggggct gtcgctgacg ctgtttttcc ccgataccgc caccactcgc gatatcaaca
     3361 aagcgcagat ttacgcctgg cgcaagggta tcaaaacgct ctattacatt cgcctgcgtc
     3421 agatggcgct ggaaggcact gaaattgaag gctgcgtctc ctgtgcactt taaggaatat
     3481 ctatgaaact ctcacgtatc agcgccatca actggaacaa gatatctgac gataaagatc
     3541 tggaggtgtg gaatcgcctg accagcaatt tctggctacc agaaaaggtg ccgctgtcga
     3601 acgatattcc tgcctggcag acattaactg tcgtagaaca acaactgacg atgcgcgttt
     3661 ttactggcct gacgctgctc gacacgctgc aaaatgttat cggcgcgcct tcgctgatgc
     3721 cctatgcact cacgcctcat gaagaagcgg tattatcgaa tatcagcttt atggaagcgg
     3781 ttcatgcccg ctcttacagt tcgattttct cgacgctgtg tcagaccaaa gatgtcgatg
     3841 ccgcctacgc ctggagtgaa gaaaacgcac cgttgcagcg aaaagctcag attattcagc
     3901 aacattatcg cggtgatgat ccgctgaaaa agaaaatcgc cagtgtgttt cttgaatctt
     3961 ttttgttcta ttccggtttc tggctgccga tgtatttttc cagccgcgga aagctgacca
     4021 ataccgcaga tctgatccgt ctgattatcc gcgatgaagc agtccacggt tactacatag
     4081 gctataaata tcagaaaaac atggaaaaga tatctctggg acaacgtgaa gagttgaaga
     4141 gtttcgcctt cgatttgttg ctggaactct acgacaacga gttgcaatac agcgatgagc
     4201 tgtacgccga aaccccgtgg gctgacgatg tgaaagcgtt tctctgttac aacgccaata
     4261 aggctttgat gaatctgggc tacgaaccgt tatttcccgc agaaatggcg gaagtgaatc
     4321 cggcaatcct cgccgcgctt tcgccgaatg ccgatgaaaa tcacgatttc ttttccggtt
     4381 cacgtatagg aaattgaaaa actaagcgat acccctgtcc gcgccttat
//
LOCUS       DADMJB010000227         4399 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.230, whole genome shotgun sequence.
ACCESSION   DADMJB010000227 DADMJB010000000
VERSION     DADMJB010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4399
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.230"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            3..368
                     /locus_tag="JN078_003896"
     CDS             3..368
                     /locus_tag="JN078_003896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000638214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042921.1"
                     /translation="MAEWPGEGGEGHLSSFFVQTDKASINVAYHHTVNQQKELGTFGA
                     FDHDWHTLAFKFKGSNSINVTPVLDGVDGQAFDLVKWANTANGLNRFVITDITGSAET
                     YPVLIDTVEVKANKAGAAA"
     gene            508..690
                     /locus_tag="JN078_003897"
     CDS             508..690
                     /locus_tag="JN078_003897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000142783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1378 family protein"
                     /protein_id="HAY9042922.1"
                     /translation="MTFIHQVMLYFCTAVCVLYLLSGGYRAVRDFWCRQIDKRAAEKI
                     SASQSAGSKPEEPVTP"
     gene            614..961
                     /locus_tag="JN078_003898"
     CDS             614..961
                     /locus_tag="JN078_003898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001427342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF826 domain-containing protein"
                     /protein_id="HAY9042923.1"
                     /translation="MIKGPLRKSAPVSQPEANPKNPLLLNNPFQRENPMSEITSLVTA
                     EAVKEVLRSEEVRSALKQKLRQNLESRLDAEVDAILDELLGVAAVPEPEGIAGDGSAS
                     DGGEPTPDSDMMM"
     gene            1038..1253
                     /locus_tag="JN078_003899"
     CDS             1038..1253
                     /locus_tag="JN078_003899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HAY9042924.1"
                     /translation="MYQMEKITTGVSYTTSAVGTGYWFLQLLDRFSPSQWAAIGVLGS
                     LLFGLLTYLTNLYFKIREDRRKAARGE"
     gene            1258..1602
                     /locus_tag="JN078_003900"
     CDS             1258..1602
                     /locus_tag="JN078_003900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdfR family protein"
                     /protein_id="HAY9042925.1"
                     /translation="MKKKYELVVKGINNYPNKITVTVALEIGGYPSLLLPDVAISLDR
                     TEDATLEFYEAEAKKQAKQFFMDVAAGLCEGDGPLPEKRPVILEAQDVLITYRGKLPG
                     IITGSLKTPPLA"
     gene            1653..2186
                     /locus_tag="JN078_003901"
     CDS             1653..2186
                     /locus_tag="JN078_003901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HAY9042926.1"
                     /translation="MNTKIKYGLSAAVLALIAAGAPAPEILDQFLDEKEGNHTTAYRD
                     GAGIWTICRGAILVDSKPVVPGMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQK
                     AGIASFCPYNIGPGKCFPSTFYRRINAGDRRGACEAIRWWIKDGGRDCRIRSNNCYGQ
                     VSRRDQESALACWDIDR"
     gene            2342..2524
                     /locus_tag="JN078_003902"
     CDS             2342..2524
                     /locus_tag="JN078_003902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310767.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042927.1"
                     /translation="MAKYKRILLRLTMKNGLELKAPVTDDISRALAFAIKWVAVGVAV
                     SPMLYGLAKLVIALKS"
     gene            2682..2856
                     /locus_tag="JN078_003903"
                     /pseudo
     CDS             2682..2856
                     /locus_tag="JN078_003903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001371701.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase"
     gene            3089..3313
                     /locus_tag="JN078_003904"
     CDS             3089..3313
                     /locus_tag="JN078_003904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042928.1"
                     /translation="MKKLLVTVKPFQGTIPFRILQRGRVLVEGSFSGKCTQLHSRTFQ
                     VNATNEELTVECTMNAAKCRMVSAALQPVC"
     gene            3658..3984
                     /locus_tag="JN078_003905"
     CDS             3658..3984
                     /locus_tag="JN078_003905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000828066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HAY9042929.1"
                     /translation="MKRNLPLIILLSSLVMGCTQHKTDMPRQLVKALPQYPAYAAANY
                     IKGRVDVKFDIGADGTVTRIEFIRSEPHHLFDEQVVKAMAKWRFEKDRPCKGVKKTFI
                     FSPSAP"
     gene            complement(4116..4316)
                     /locus_tag="JN078_003906"
     CDS             complement(4116..4316)
                     /locus_tag="JN078_003906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000095744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3950 domain-containing protein"
                     /protein_id="HAY9042930.1"
                     /translation="MSSKNRTRRTTTRNIRFPNQMIEQINIALDLKGSGNFSAWVIEA
                     CRRRLATDATHLRPASMKNNEK"
BASE COUNT         1125 a          938 c         1212 g         1124 t
ORIGIN      
        1 gaatagcgga atggccgggt gagggtggtg aaggccatct gagttctttc tttgtccaga
       61 cagataaagc cagtattaat gttgcatacc atcatacagt taatcaacaa aaagaacttg
      121 gcacgtttgg cgcattcgac catgactggc atacgcttgc atttaaattt aagggcagta
      181 acagcattaa tgttactccg gtgcttgatg gtgtggatgg acaggcgttt gacctggtga
      241 aatgggccaa tactgctaat ggactcaaca ggtttgtcat tacggatatt acaggtagtg
      301 cagaaaccta ccctgtactt attgatacgg tggaagttaa agcaaacaaa gctggagcag
      361 ccgcataatt gctaaaaaaa gccgccagcg gcaggaatgg aagctggcgg aggtaatccc
      421 aatggagaat gtaaagaaaa gatgctttcg tacattggtt ttttaaatga aaacaattct
      481 cattgtcaac cataacggta agaaattatg acatttattc atcaggtgat gctgtacttc
      541 tgtacggcgg tctgtgtgct gtatcttctt tcgggtgggt acagggctgt gcgcgatttc
      601 tggtgcaggc agattgataa aagggccgct gagaaaatca gcgccagtca gtcagccgga
      661 agcaaacccg aagaacccgt tactccttaa caaccccttt cagcgagaaa atcccatgtc
      721 agaaatcaca tccctggtca ctgcagaggc agtgaaggaa gtcctgcgct ctgaagaagt
      781 ccggagcgca ctgaaacaga aacttcgcca gaatcttgag tcgcgtcttg atgcagaagt
      841 ggatgccatt ctggatgagc tgctgggcgt agcagcggtt cctgagccgg aaggtatcgc
      901 gggtgacggg agtgcttcag atggcggtga acctacacct gacagcgaca tgatgatgta
      961 agcatgcgca agggaccatc ggtgtgtgcc ggtggtcttt atattgttgt gagcttccgg
     1021 attgcgggag acggggtatg taccagatgg aaaaaatcac aacaggtgtg tcatacacca
     1081 cgtcagcggt gggaacgggc tactggttcc tgcagttgct ggacaggttt tccccgtctc
     1141 agtgggcggc aataggcgtg ctggggagtc tgttgtttgg gctgctgaca tatctgacta
     1201 acctgtattt caaaatcaga gaggaccgtc gtaaggcggc gcggggagag taaagcgatg
     1261 aagaaaaaat acgaactggt tgttaaaggg ataaataatt acccgaataa gattactgtt
     1321 actgtggcac tggaaattgg tgggtatccg tcactgttgt tgccagatgt ggcgattagt
     1381 cttgaccgta ctgaagatgc cacgctggag ttttacgaag ctgaggcgaa aaagcaggcg
     1441 aagcagtttt tcatggatgt tgctgccggg ttatgtgaag gggatggtcc gttgccggaa
     1501 aagcgccccg taattttaga ggcgcaggat gtgttgataa cctacagagg aaaactaccg
     1561 ggaataatta ctggttctct gaagactcca ccgctggcct gaagacttaa catatccagg
     1621 gatttgaaat cgataaaccc tgataaatat ccatgaacac caaaatcaaa tacggcctgt
     1681 cggctgccgt tctggcgctg attgccgcag gtgcgcctgc gcctgaaatc ctcgaccagt
     1741 ttctggatga aaaggaaggt aaccacacca cggcataccg tgatggcgcg ggtatctgga
     1801 ccatctgccg cggtgccatc ctggtggata gtaaacctgt cgtcccgggc atgaagttgt
     1861 cgaaggaaaa atgcgaccag gtcaacgcca ttgagcgtga taaggcgctg gcatgggtgg
     1921 agcgcaatat taaagtgccg ctgaccgaac cccagaaagc gggtatcgcg tcattttgtc
     1981 cctataacat tggccccggt aagtgtttcc cgtcgacgtt ttacagacgg attaatgctg
     2041 gtgaccgcag gggagcatgc gaagcgattc gctggtggat taaggacggt ggcagagact
     2101 gccgtatccg ctcaaataat tgctacggtc aggtatcccg gcgagaccag gaaagtgcgc
     2161 tggcgtgctg ggacatcgac agataagcag aatattttgc tgaaaataag gcatgagcac
     2221 gcggacggat aacacgaaat cctgcgaact ggcgaaacgt aagtgaataa aagtaaaaac
     2281 cccgtttgtt ggcaccaggc ggggttttgt gtttctgacc ttgagtaagg caagggagaa
     2341 catggcgaag tataaacgaa ttctgttgag gttgaccatg aaaaacggcc ttgaactgaa
     2401 agcgcctgta actgatgaca tcagcagagc actggctttt gccattaagt gggtggcggt
     2461 cggtgttgct gtgtccccga tgctgtatgg gctggcaaaa ctggtcattg cgttgaaatc
     2521 gtgaagggag gattaagcat gtcagacaaa ctcataacgc tggcgaagat cctctgtgta
     2581 attgtcggca tttcattttc actaatgctg gttgctcttt ttctttccat ggcctggatg
     2641 atgttgtctt cgtcggggct gctggggtga acataaaccg aatgctttcc gcgtttaccg
     2701 ttattctgct ggtggtctgt ggtgcgctgt ggctggcaac agaccattac cgtgataacg
     2761 ccatcaccta caaagcgcag cgcgataaaa aagccagaga gctggagctg gcaaacgcaa
     2821 ccattactga catgcagcag cgccagcgtg atgttgccgc tggtcgtaag cgcctgcgga
     2881 tcaacgccac ctgctccggt accgtgcgtg aagccaccgg cacctccgga atggataatg
     2941 caaccggccc ccgactggca gacaccgctg aacgggatta tttcaccctc agagagcggt
     3001 tgatgacaat gcagaagcaa ctggaagggg cgcaggaata tatccgcact cagtgtatta
     3061 actagtattt ttgttatccg gagaatgcat gaagaaatta ctggtaaccg taaagccttt
     3121 tcagggaaca attccgttcc gtattttgca gcgtggtcgt gttcttgttg aaggttcgtt
     3181 cagtggtaaa tgtacgcaat tacactcccg gacctttcag gtgaatgcca cgaatgaaga
     3241 gctaaccgtt gagtgtacga tgaatgccgc taaatgccgc atggtatccg ctgcattaca
     3301 gccagtgtgt tgagcgacct tattaaccat gcgcggtatt gtcgccgtat ccccgcatta
     3361 acagagaccg cagcccgacc gggagactcc tctgcgcgag tgtgcgggga taatcaaaaa
     3421 cgatacacac cggggtttac cgcgttaacg gagcgcggcg ttgtcccctc atggtcgctg
     3481 gtccggtgcg atggtggaag aaaccggacg atgtgttacc tcgcaagctc tgttatgtca
     3541 tgtgtctgat ttgtgattta agtcggataa ttgtcgttgc cattaagcag aggattgatg
     3601 accgacaggg tggcattgtt agaataagac ttattcttat ctgtgccggg aatgaaaatg
     3661 aaaagaaacc ttccgttaat tattttgttg tcttctctgg ttatgggctg tacgcaacat
     3721 aaaacagata tgccccgaca gttggttaag gcattaccac aatatccggc ctatgcagcg
     3781 gcaaattata taaagggacg ggttgatgtg aagtttgata ttggtgctga tggtactgtc
     3841 acccgaattg agtttatccg ttcagagccg caccatttgt ttgatgagca ggttgtaaag
     3901 gcgatggcaa aatggcgatt tgagaaggac aggccgtgta aaggcgtgaa gaaaacgttt
     3961 atctttagtc cttctgcacc ctgattattt catcagaaat taattatcac tctgttgtta
     4021 ttctgtacat cccggcaggg taagtcttgt tccgtcggat atgaagatga aatattgttg
     4081 gaggacagtg ggtacctgct cctgtaaccg aacgttcatt tctcgttatt tttcatgctg
     4141 gccgggcgca gatgcgttgc atctgttgcc agccttctcc tgcaggcttc aataacccac
     4201 gctgaaaagt ttcctgaacc tttcagatca agagcgatgt taatttgttc aatcatctgg
     4261 tttggaaatc ggatgttgcg ggttgttgtt ctgcgggttc tgttctttga tgacataatg
     4321 tttccccata ttcagtgttg ctgatttgta ttatctgaag ttgcttttac gttaatttga
     4381 tgcagatcaa tcaatacga
//
LOCUS       DADMJB010000228         4399 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.231, whole genome shotgun sequence.
ACCESSION   DADMJB010000228 DADMJB010000000
VERSION     DADMJB010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4399
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.231"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            225..597
                     /locus_tag="JN078_003907"
                     /pseudo
     CDS             225..597
                     /locus_tag="JN078_003907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611434.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(1159..2106)
                     /gene="icsP"
                     /locus_tag="JN078_003908"
     CDS             complement(1159..2106)
                     /gene="icsP"
                     /locus_tag="JN078_003908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858404.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="omptin family outer membrane protease IcsP"
                     /protein_id="HAY9042931.1"
                     /translation="MKLKFLVLALCVPAIFTTHATTNYPLFIPDNISTDISLGSLSGK
                     TKERVYHPKEGGRKISQLDWKYSNATIVRGGIDWKLIPKVSFGVSGWTTLGNQKASMV
                     DKDWNNSNTPQVWTDQSWHPNTHLRDANEFELNLKGWLLNNLDYRLGLIAGYQESRYS
                     FNAMGGSYIYSENGGNRNKKGAHPSGERTIGYKQLFKIPYIGLTANYRHENFEFGAEL
                     KYSGWVRSSDTDKHYQTETIFKDEIKNQNYCSVAANIGYYVTPSAKFYIEGSRNYISN
                     KKGDTSLYEQSTNISGTIKNSASIEYIGFLTSAGIKYIF"
     gene            complement(3487..3639)
                     /locus_tag="JN078_003909"
                     /pseudo
     CDS             complement(3487..3639)
                     /locus_tag="JN078_003909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            3695..4387
                     /gene="ospZ"
                     /locus_tag="JN078_003910"
     CDS             3695..4387
                     /gene="ospZ"
                     /locus_tag="JN078_003910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000625270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector cysteine
                     methyltransferase OspZ"
                     /protein_id="HAY9042932.1"
                     /translation="MISPIKNIKNVFPINTANTEYIVRNIYPRVEHGYFNESPNIYDK
                     KYISGITRSMAQLKIEEFINEKSRRLNYMKTMYSPCPEDFQPISRDEASIPEGSWLTV
                     ISGKRPMGQFSVDSLYHPDLHALCELPEISCKIFPKENSDFLYIIVVFRNDSPQGELR
                     ANRFIELYDIKREIMQVLRDESPELKSIKSEIIIAREMGELFSYASEEIDSYIKQMND
                     RFSQIKARMSVT"
BASE COUNT         1351 a          863 c          849 g         1336 t
ORIGIN      
        1 gatctggttc aacaatatgc agatggtaca caacctcttt aaccagccca tccggattat
       61 tcagagccct tccgcaatcc ggaataaaag tgctgtttta ccgtgaaccc tctgaaaatc
      121 agcgagcagt gttttaacca gccgacgttc agagcgtact gacagacggt ggacaatttg
      181 aataaacagt tcaatcagac cgtagatgct ctcccgttgg cgacatgctg ggagcggtgg
      241 aacaccgctt cggcaacgag cttccggcgt ctccagtgaa gtgactgacg gataatggtt
      301 catgctaccg ggctaatgaa acacgccagt tcacccggat gttgggactt tgttgaaccg
      361 aagaacacgg cggtgcggag tccggagagt aacagaatag caaagagctt cgtgaaaaca
      421 ataaagtgtg actacatcag tatcatgccc aaacctgacg ggttaacggc agcaaagaac
      481 cttgcagagg cattcgagca ttataacgaa tggcatccgc atagtgcgct ggattatcgc
      541 tcgccacggg aatatctgcg gcagcgggcc aatgataaca ggtgtctgga aatatagggg
      601 caaagccacc cacgaacgat ccagcatata atcaagaaat tagatttcat ttaacataag
      661 atagattatg tgcaccaaga ggcatttcct taatttctga atttacaggc tcttttgctc
      721 tctttgctat gctgtggatt tggaaagata gagtgctggc tgattattta ggtattttca
      781 tcagcatgtc cctgatagca ctgttccatc agcgctttca ggcgataata gtagaccttg
      841 ggtagcctct gctcatgtgt aacttgatac cccgagaaca gccacgatgc tctaagcggt
      901 tcttatttct ccggtctcag ggtcggtaat gccaacagta agtccacagt aatcaacgaa
      961 gagttttttg aaccgccccg gaaatcctgg agactaaacg ccctgagaaa gaggtaaaca
     1021 gaatgactaa aaatacacgt ttttcccccg aagtccgtca acgggcagtt cgtatggttc
     1081 tggaaagtca gggcgaatat gactcacaat gggcggcaat ttttagccat gaaaacgtaa
     1141 tcaactcggt gaaccaattc aaaaaatata ctttatacct gcggaagtga gaaaaccaat
     1201 atattcaata cttgcactat ttttaatggt gccagatata ttggtacttt gctcataaag
     1261 agatgtatca ccttttttat tagaaatgta atttctggag ccttctatat aaaattttgc
     1321 actgggggtg acatagtatc caatattcgc agcaacagag cagtaatttt ggttttttat
     1381 ttcatcttta aaaattgtct cagtctgata gtgtttatct gtatcagatg aacgaaccca
     1441 accactatat ttcagttctg ctccaaactc aaaattctca tggcggtaat tagcagttaa
     1501 tccaatataa ggtattttga agagctgttt gtaacctatt gttctttcac cactaggatg
     1561 tgcccctttt ttattcctgt tccccccgtt ttcactataa atataactcc ctcccattgc
     1621 attaaaactg taacgactct cttggtaacc tgctattagt ccaagtcgat aatccaaatt
     1681 atttaataac caacctttaa gattcagctc gaattcgtta gcatcacgga gatgcgtatt
     1741 gggatgccag ctctggtcgg tccatacctg aggggtattg gaattgttcc agtctttatc
     1801 aaccatgctt gctttctggt tacctaaagt agtccaaccg gaaactccga aagacacttt
     1861 tggaattagc ttccaatcga tgccacctct aacaatagtc gcattactgt atttccagtc
     1921 cagttgacta atttttctcc ccccttcctt gggatgataa acgcgttctt ttgttttgcc
     1981 actcagagat cctagactaa tatccgtact gatgttatcc ggtatgaaaa gtggatagtt
     2041 agtggtagca tgtgtagtaa agatcgcagg tacacaaagt gcaagtacaa ggaattttaa
     2101 tttcatcgag aactctactt ttttggttga aatgtccatg atcttcttac tttataagat
     2161 aaacgtcaat gccaagcatt attttaatta aatatttgtt tatgttacca agaacatatc
     2221 ttttattata atatttattg aacttttgta aaaataaaaa aatacctcat tgtgcgaata
     2281 aagtaacggg ggccatagat ttctctacct accttttggt gttcatacct gaggctgata
     2341 gtttcaggat tccgcgacaa ttctactcac cttcttgttc tctcgccaat atgaaatcaa
     2401 tcagaaaagc gttccataag aacaacgata agacaataaa ttgtcatcac ggctgcaata
     2461 gccaacgtgc ctttcagtac caacatgaca acctcctgta tttgacgtaa cgtgtgctga
     2521 taaatatgta tttgtatctc aactgactca atacaacact taagtatagt ttttcagatt
     2581 ttgtttttcc cgtgaaatat tatggaaatg gcagaagcaa tacattgaat tccgattcga
     2641 gtgaatacgg ctagcgggca cctcacttta gcactgaagc catcaacttt tatttgactt
     2701 atttcaatgg aaagctttct cactatcagt acaggtaatt cccatccttt taaagtcgag
     2761 agtcagactg cgactaatac agttaaagtg accaaactca gttatcctct acacatttta
     2821 cctcatgttt acttggacaa ttcattggtg cttttataaa agaataaata ttctactaat
     2881 ttaatgcatc acctaaaata gtatttttta taatagaact gtatctatag tatattatta
     2941 aagcttaatt atttattatg ctttaatgtg gttgtccgat taaggactaa tccttgaaaa
     3001 cgccgtatag ggcgggagtt cactctattg cgataacgta accgtacaat attgtgcgtt
     3061 tcccaaattg accactactg aactattctg ggatttaaat gcaataaaat ggttggttga
     3121 aggtcgtggt gatgatgtta gtccttttga gaatattcca gtgccagatc ttacttataa
     3181 taaagaggct tggcagtttg gataagctat tgtccttatt ccactaatac aaactttttg
     3241 taaagtatat taaatatact tcatttcata ctgaaatccc cggaagtatt caatcaaaca
     3301 attacaccat aaaaggaaga gggagcccca attaagttat caagcatgtt tatgatacct
     3361 gcagggtata aattttctgg ctgcaagcag acacatataa aacgtcttta ttgatcctac
     3421 ccacataata tggacgcagt cgtaagtgag gctctgtgag cctacccacg taatatggac
     3481 acaggcctaa gcgaggttct ggttttcaaa ttgttccgga ctgaggccgc cacaccaacg
     3541 gtgccgtcgc cagcgattgt aatcgcactc gatataatta aacactgttg cccgcactat
     3601 ttcccgatag ataaagtgtt ctccgtggag acattccact taggaacaat tatattgttc
     3661 atggtaatgt ttatatttga gtatagagat taaaatgatt agtcccatca agaatattaa
     3721 gaacgtattt ccaataaata ctgcaaatac tgaatatata gtgagaaata tttatcctag
     3781 agttgaacat ggttacttta atgaatcacc aaacatatat gacaagaagt atatctctgg
     3841 tataaccaga agtatggcac aattaaaaat agaggagttt attaatgaga aatccagacg
     3901 acttaattat atgaagacaa tgtattctcc atgtccggaa gattttcagc ctatttccag
     3961 agacgaagcc agtataccgg aaggaagctg gttgacagtt atatctggaa aacgtcctat
     4021 ggggcaattt tctgtggata gtttgtacca tcctgactta catgcattat gtgagctccc
     4081 agagattagt tgtaagatct tccctaaaga aaatagtgat tttttgtata taattgttgt
     4141 attcagaaat gattctcccc aaggagaact acgggcaaat cggtttatag aactatatga
     4201 tataaaaaga gagattatgc aagtgttaag agatgagtcg ccagagttaa agtctattaa
     4261 atctgagatt attattgctc gtgaaatggg agaacttttt agttatgcat cagaggaaat
     4321 agatagctac ataaaacaaa tgaatgacag gttttctcaa atcaaggctc gaatgtctgt
     4381 tacttaatgt atattaatt
//
LOCUS       DADMJB010000229         4378 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.232, whole genome shotgun sequence.
ACCESSION   DADMJB010000229 DADMJB010000000
VERSION     DADMJB010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4378)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4378)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4378
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.232"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(61..723)
                     /gene="exoX"
                     /locus_tag="JN078_003911"
     CDS             complement(61..723)
                     /gene="exoX"
                     /locus_tag="JN078_003911"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease X"
                     /protein_id="HAY9042933.1"
                     /translation="MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPIS
                     PQAMAIHRITEAMVADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKL
                     ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ
                     MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWSFNNLDSMSPELRLTLKHYLE
                     NT"
     gene            complement(747..1403)
                     /locus_tag="JN078_003912"
     CDS             complement(747..1403)
                     /locus_tag="JN078_003912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HAY9042934.1"
                     /translation="MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPS
                     LSLLACDYSRRALPAPPDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPW
                     RKTPGIYHQSHGACLGRRSRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARR
                     LQFFSHQYSIAVLMANARGNSALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR
                     "
     gene            complement(1505..1735)
                     /locus_tag="JN078_003913"
     CDS             complement(1505..1735)
                     /locus_tag="JN078_003913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit theta"
                     /protein_id="HAY9042935.1"
                     /translation="MLKNLAKLDQTEMDKVNVDLAAAGVAFKERYNMPVIAEAVEREQ
                     PEHLRSWFRERLIAHRLASVKLSRLPYEPKLK"
     gene            1874..2248
                     /gene="yobA"
                     /locus_tag="JN078_003914"
     CDS             1874..2248
                     /gene="yobA"
                     /locus_tag="JN078_003914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopC domain-containing protein YobA"
                     /protein_id="HAY9042936.1"
                     /translation="MASTARSLRYALAILTTSLVTPSVWAHAHLTHQYPAANAQVTAA
                     PQAITLNFSEGVETGFSGAKITGPKNENIKTLPAKRNEQDQKQLIVPLADSLKPGTYT
                     VDWHVVSVDGHKTKGHYTFSVK"
     gene            2252..3119
                     /gene="copD"
                     /locus_tag="JN078_003915"
                     /pseudo
     CDS             2252..3119
                     /gene="copD"
                     /locus_tag="JN078_003915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416354.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis membrane protein CopD"
     gene            3132..3473
                     /locus_tag="JN078_003916"
     CDS             3132..3473
                     /locus_tag="JN078_003916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebY family protein"
                     /protein_id="HAY9042937.1"
                     /translation="MMKKSILAFLLLTSSAAALAAPQVITVSRFEVGKDKWAFNREEV
                     MLTCRPGNALYVINPSTLVQYPLNDIAQKEVASGKTNAQPISVIQIDDPNNPGEKMSL
                     APFIERAEKLC"
     gene            complement(3855..4325)
                     /locus_tag="JN078_003917"
     CDS             complement(3855..4325)
                     /locus_tag="JN078_003917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001212336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HAY9042938.1"
                     /translation="MDLALVTGQRREDITNMRFSDIYDDRLHIRQIKTGMMIAIPLSL
                     SLPVAGLRLGAVVEQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKLTGIQ
                     FSENPPTFHEVRSLAGRLYKETCGEEFAQRLLGHTSEKTTKMYLDEREKTYLLL"
BASE COUNT         1090 a         1056 c         1079 g         1153 t
ORIGIN      
        1 gatggaatat gcttttctgg tcgcgctggc gcagggaaca ttacccgcta cgcctgcgga
       61 ttaagtattt tccagataat gtttcagtgt taaacgcagc tccgggctca tgctgtccag
      121 gttattaaat gaccagcgca gatagcccgg atcgcgttcg gcaacgtcgg aaaccgcttt
      181 gccacggtat ttgccaaagg tgaaggtcgt catcaacgac ggacgtccgg tgatatcggc
      241 catctgttct gccgtccagc cggaggtgtt cataatatcg ataagcaacg cggcggtgat
      301 ataacagtca tacaacgcgc ggtgatgatg caggcccggc ggcgtctgta cattgagctt
      361 ccgtgtttta tataacgcca tattgctgta cttgatccct ggccacaaac gacgggccag
      421 tttcatagtg caaatccact caccgggcat ctcaggcagt acgcggcggt caaagctggc
      481 gttgtgcgcg acataccatt cactaccgta atagtgtggg atcacatctt caatccacgg
      541 tttatcggcg accatggctt cggtgatgcg atgaatcgcc atcgcttgtg gactaatagg
      601 acgatcgggg cgcaccaggt ggctcatggg gttgacgatt tttccgtcaa tgacatcaac
      661 agaggcaatc tcaacgatcc ctccctgcaa accgcaggtt tctgtatcga taatgcgcaa
      721 catggcatgc tccaggccga aaaagcctag cgtaatggaa tgatatcgcc ttgccaaccc
      781 tgtgatgaac gctgaccgac taacaataat gaaccacgat cggcgcgaac gatgagacga
      841 ccatattcat cccatagtgc actgttacca cgggcatttg ccatcagcac ggcaatcgag
      901 tactgatgtg aaaaaaattg taagcgacgg gccgacgcca gcaggtcggg ttctcccaga
      961 cattgccctg tagtaaacag tgaacaggtc gggtccatat ccataccttg cggttgttca
     1021 tcgaccaccg tgatggttct ggaacgacgg cccagacatg caccatgact ctgatggtag
     1081 atcccaggcg tttttcgcca cggtgcgaac accgcaattc cacgaataaa gcgatcgtta
     1141 tattcaacgg gaaggccggc aatgatggtc attcgccagg tcgttgcggc ataacaaagc
     1201 gggtctaaca gtgagagatc gggtggggca ggaagggcac gtcgcgaata atcacacgcc
     1261 agtaaagaaa gcgatggaaa aactaacagc tgacattgtt gcctggcggc ggccctcaca
     1321 aactccagat gatgagctac ctgttcggtg agtgaggttt tacgaggctc atattgcgct
     1381 gctgcaactt tccagaacga cataatgact tccttttcaa aatgactgca aattatgggt
     1441 gcggtttaga aaatactcat aatttagcag gcgttatgta agaaagtgta actctgtata
     1501 agttttattt aagtttgggc tcgtaaggta aacgtgacag tttgaccgaa gccaaacggt
     1561 gggcaataag cctctcgcga aaccagctgc gcaaatgttc aggctgttca cgttcaaccg
     1621 cttcagcgat caccggcata ttgtagcgtt ctttaaatgc caccccggcc gccgccaaat
     1681 cgacattcac tttatccatt tctgtttgat ccagtttagc cagattcttc agcattctta
     1741 atctcctcat cattcgcggg caaaagttac taagagtgag ccaggatggc aagccggaat
     1801 tgatgatcct cgactcagac attagacaag gttatgctct gtaaaaaagt tattacaaaa
     1861 agtaatagat aatatggctt caactgcacg ctcccttcgc tacgcgctgg caatcctgac
     1921 cacttcgttg gtgacacctt ccgtctgggc acatgcgcat ttaacgcatc agtatcctgc
     1981 ggcaaacgcg caagtgacag ctgcaccgca ggcaatcact ttaaacttct cggaaggtgt
     2041 tgaaacagga ttcagtggtg caaaaatcac ggggccaaaa aacgaaaata ttaaaacatt
     2101 accggcgaag cgaaatgagc aggaccaaaa gcaactgatt gttccactgg ccgattcgct
     2161 gaaacccgga acctacaccg ttgactggca tgttgtttcg gtggacgggc ataaaacgaa
     2221 aggacactac acctttagcg tgaaataaat catgctggcg tttacctgga tcgcgctgcg
     2281 atttatccat ttcacctcgc tgatgctggt ttttggcttc gcaatgtacg gtgcctggct
     2341 ggcccccttg acgattcgtc gcttgctggc gaagcgtttt ctgcgtttac aacagcacgc
     2401 tgccgtctgg agtttgatca gtgccactgc aatgctcgcc gttcagggcg ggttgatggg
     2461 aacgggatgg acagatgtat tttcgccaaa catttggcag gctgttttgc aaacgcagtt
     2521 tggtggcgtc tggttatggc aaattgttct cgccctcgta acgttgcgcc cttatgcaac
     2581 cgcggaatat gccacgtttg ctgtttatgc tcactaccgc gcaatttatt ctgctggcgg
     2641 gagtggggca tgcgacgctg aatgaagggg taacggcgaa aatccatcag actaatcaca
     2701 cgattcacct gatttgtgcg gcggcgtggt ttgggggatt actgccggtg ctctggtgta
     2761 tgcaactcat caaaggccgt tggcgacacc aggctattca ggcgctgatg cgtttttcat
     2821 ggtgcgggca ttttgcggtg atcggcgtac tggcaagcgg ggtgcttagt gcattgttga
     2881 ttaccggatt tccccccacg cttacgactt actggggcca actcttattg ctcaaagcca
     2941 tcctggtgat gattatggtg gtcattgcgc tggctaatcg ttatgttctt gtaccgcgca
     3001 tgaggcagga tgaagatcgt gcggcaccct ggtttgtgtg gatgactaaa ctcgaatggg
     3061 cgataggtgc ggtagtgctg gtgatcatca gcctgcttgc gactctcgaa cctttttgat
     3121 ggattacgaa aatgatgaaa aaaagtattc tggcgtttct gttactcacc agttctgcag
     3181 cggcgctggc tgcaccgcag gtgattaccg tcagtcgttt tgaagtgggt aaagacaaat
     3241 gggcgtttaa tcgcgaagag gtgatgctga cttgccgacc gggtaatgct ttgtatgtta
     3301 ttaatccgag taccctcgtg cagtatcctt taaacgatat cgcacaaaag gaagttgcca
     3361 gtgggaagac caatgcccaa cccatttcgg tgattcagat tgatgatcct aacaatcccg
     3421 gcgaaaaaat gagtctggca ccgtttatag aacgagctga aaaactctgt taattaccta
     3481 aaatagcctt ttgatttcca ataaaaaaac cgcctcagtt ctttcaccag aacgggcggt
     3541 tttaacattt cagctgatga ccaccacgct ttttattgac cattttgcac gcaaactgga
     3601 aaacctggcg tcgtcatcta ttcttaaagg gcaaggcaac taagcctgca ttaatgccaa
     3661 cttttagcgc acggctctct cccaagagcc atttccctgg accgaataca ggaatcgtat
     3721 tcggtctttt tttaattgca tttaaaatca attagttgca aatgtctccc cgaaatttac
     3781 tcgaatttct gtattccggt cttttttggt tatatcacaa ccaaaataca tttaacaatc
     3841 catttacgtt aaaatcagag cagtaagtac gttttttctc tctcatcaag atacattttt
     3901 gttgtcttct ccgatgtgtg gccaagtaga cgctgagcaa attcttctcc acatgtttct
     3961 ttgtacaatc gtccagccag gcttctgact tcgtgaaaag ttggtgggtt ttcactgaac
     4021 tggatacctg ttaattttct ggctgcgaca aatttctttg tcaggccgtc cgggtgaatg
     4081 ctgccgtcag ggctgttttt tctaatcccg gcactgatta gataatcccc cctacttacc
     4141 atgcggcact gttcaactac tgcaccaagt cgtaaaccag cgacaggaag gctgagtgac
     4201 agggggatag caatcatcat tcctgtctta atttgcctga tgtggagacg atcatcataa
     4261 atatcactga accgcatatt cgttatgtct tcgcgacgtt gtcctgttac aagggctaaa
     4321 tccatagcta atgggaacca tgccggaagt tgatctgctg cctccctgat gcagttgt
//
LOCUS       DADMJB010000230         4349 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.233, whole genome shotgun sequence.
ACCESSION   DADMJB010000230 DADMJB010000000
VERSION     DADMJB010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4349)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4349)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4349
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.233"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            142..2139
                     /locus_tag="JN078_003918"
     CDS             142..2139
                     /locus_tag="JN078_003918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004119118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HAY9042939.1"
                     /translation="MSENDTIPKKSTSQINKAVFFTSALLIFLLVAFAAVFPDVADKN
                     FKLLQQQIFTNASWFYILAVALILLSVTFLGLSRYGDIKLGPDHAQPDFSYHSWFAML
                     FSAGMGIGLMFFGVAEPVMHYLSPPVGTPETVAAAKEAMRLTFFHWGLHAWAIYAIVA
                     LILAFFSYRHGLPLTLRSALYPIIGDRIYGPVGHAVDIFAVIGTVFGVATSLGYGVLQ
                     VNAGLNHLFGVPINETVQVILIVVITGLATISVVSGLDKGIRILSELNLGLALLLLAL
                     VLCLGPTVLLLKSFVENTGGYLSELVSKTFNLYAYEPKSSNWLGGWTLLYWGWWLSWS
                     PFVGMFIARVSRGRTIREFVTGVLFVPAGFTLMWMTVFGNSAIYLIMNQGATDLANTV
                     QQDVALALFNFLEHFPFSSVLSFIAMAMVIVFFVTSADSGAMVVDTLASGGVANTPVW
                     QRIFWASLMGIVAIALLLAGGLSALQTVTIASALPFSVILLISIYGLLKALRRDLTKR
                     ESLSMATIAPTAARNPIPWQRRLRNIAYLPKRSLVKRFMDDVIQPAMTLVQEELNKQG
                     TISHISDAVDDRIRLEVDLGNELNFIYEVRLRGYISPTFALAAMDNDEQQTEQHRYYR
                     AEVYLKEGGQNYDVMGWNQEQLINDILDQYEKHLHFLHLVR"
     gene            2202..3479
                     /locus_tag="JN078_003919"
     CDS             2202..3479
                     /locus_tag="JN078_003919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016239947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2254 domain-containing protein"
                     /protein_id="HAY9042940.1"
                     /translation="MISRWKWMLKQTIKKLWFRATLFAIVAIITALLSILFKSMIPES
                     VSVKVGAEAVDNILNILASSMLAVTTFSLSIMVTAYGSATTNVTPRATRLVVEDVTTQ
                     NVLATFIGSFLFSLVGIIALNMGAYGERGRVILFIVTLVVIALILITLLRWIQHLTSL
                     GRVGETTAQVEQAAIETFIARARNPCLGGYPWLENNEQPKGTVAVYPKKIGYVEYIDM
                     VKLSKLLTNDPRHVYLVAQPGSFIHPSMPVLYLSQGQESSINTDLLETIIVSDARSFA
                     QDPRFCLSVMAEIACRALSPAVNDPGTAIDVIGRGVRILSTYAQNKSDEIEVKYPSVH
                     VAPLQNNDLLEDFFSPVARDGASMREIQIRVLKGLSMLSKGWPEIFAEAAHTLAFETL
                     EHATRADHIDSDRYLIKSTYYNLFSGEYSNKKK"
     gene            complement(3930..4349)
                     /locus_tag="JN078_003920"
                     /pseudo
     CDS             complement(3930..4349)
                     /locus_tag="JN078_003920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858162.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
BASE COUNT         1049 a         1006 c         1096 g         1198 t
ORIGIN      
        1 tggtagtgtc cgctattgcc agtacacctc aacattccac catgcattcc gattaacgcc
       61 gcatagccag ttgaactttg ctactttgtg agaggtagta ccttctatcc agtgcgaatt
      121 taattaatgg aataaatgat tatgagtgaa aatgatacaa tcccaaagaa gtctacaagt
      181 cagattaaca aagcggtatt ctttacatct gctttgctaa ttttccttct tgtcgccttt
      241 gccgccgtat tcccggatgt cgccgacaaa aattttaaac tacttcagca acaaatcttc
      301 acgaatgcca gctggttcta catccttgct gtggccctga ttttactgag tgtcacgttc
      361 cttggactct cacgctacgg tgatatcaag ctgggcccgg accatgcgca gcctgatttc
      421 agctaccact cctggtttgc gatgcttttt tcggcaggga tggggatcgg cctgatgttc
      481 tttggcgttg ccgaacctgt aatgcattat ctttcgccac ccgttggcac tccagaaacc
      541 gttgcggcag ctaaggaagc aatgcgtctg acctttttcc actggggact gcacgcatgg
      601 gcaatttatg ccattgtggc gctgattctg gcgttcttca gttaccgtca cggtctgcct
      661 ttaactctgc gctccgcact ctatcccatt attggcgatc gcatatacgg acctgtagga
      721 catgcggttg atattttcgc tgttataggc acggtctttg gcgttgcgac atcactgggt
      781 tacggtgttt tgcaggtgaa tgccggtttg aaccatcttt tcggggtgcc catcaatgaa
      841 acggtgcagg taattctgat cgtggtcatc acggggttag cgacgatttc agtggtgtcc
      901 ggtctggata agggaatacg tatcctgtct gaactcaatc tgggtctggc tttgttgctc
      961 ctggcgctgg tcctgtgtct gggaccaacc gtgcttctgc tgaagtcatt tgtggaaaat
     1021 acgggcggtt atctttcgga actggtgagt aaaacgttca acctttacgc gtatgagccc
     1081 aagtcgagca actggctggg gggctggaca ttactgtact ggggatggtg gctttcatgg
     1141 tcgccgtttg tggggatgtt catcgcacgg gtctcccgcg ggcgaaccat tcgcgagttt
     1201 gtcaccggcg tgctgtttgt tcccgcgggt tttacgctaa tgtggatgac ggtgtttggt
     1261 aacagcgcga tctatctcat tatgaaccag ggggccacag acctcgccaa tactgttcag
     1321 caggatgtgg cgctggccct gtttaatttc ctggagcatt tcccgttctc ttctgtgctg
     1381 tcattcattg caatggcgat ggtcatcgtc ttctttgtaa cgtctgctga ttcgggggca
     1441 atggttgtgg atactctggc atcaggtgga gtggcaaaca cacccgtctg gcagcgaata
     1501 ttctgggcct cgctcatggg cattgttgca attgcgcttc tccttgccgg agggctaagt
     1561 gcgctgcaaa cggtgacaat agcgagtgca ttgcccttct cagtgatctt actaatatct
     1621 atatacggac ttttaaaagc tttgcgccgg gatttgacca agcgtgaaag cctgagcatg
     1681 gcgacaattg ctcctacggc tgcacgtaac ccaattcctt ggcagagaag gttacgcaat
     1741 atcgcgtatc tgccgaagcg atctcttgtg aaacgtttta tggacgacgt tatccagccc
     1801 gccatgacgc tggttcagga ggaactgaac aagcagggga cgataagcca cattagtgat
     1861 gcagtcgacg atcgtattcg tcttgaagtc gatttgggca acgagctgaa ttttatatat
     1921 gaagtgaggc ttcgcgggta tatctcaccg accttcgcgc tcgccgcaat ggataatgat
     1981 gagcagcaga ctgaacaaca tcgatattat cgcgctgagg tttatctcaa agaaggcggt
     2041 caaaattatg atgtgatggg ctggaaccag gaacagctga ttaatgacat actggaccag
     2101 tacgaaaaac acctgcactt cctgcacctg gttcgttaat agcaacatgc cgtcctgggg
     2161 gcggcaatta ttatcccggc cgcaatatga gggaatgcag aatgatttca cgctggaaat
     2221 ggatgctgaa gcagacaatt aaaaaactat ggttcagggc aacgttattc gcaattgtcg
     2281 cgataataac ggccctttta tcaattcttt ttaaatcaat gatacctgag tcggtttccg
     2341 tgaaggttgg tgcggaagca gtcgataaca ttctgaacat actggcatcg agtatgctgg
     2401 cagtgaccac attttcgctg agtatcatgg tcacagccta cggttcagcc actactaatg
     2461 tgactcccag agctacgcgt ttagttgttg aagacgtcac cacacaaaat gtactggcca
     2521 ccttcatcgg ttcttttctc ttcagtctgg tagggattat tgccctcaat atgggagctt
     2581 atggagaaag ggggagagtc attttattca ttgtcacact ggttgtcatt gccttaatcc
     2641 tcatcacatt gcttcgctgg atacagcatt tgacctctct ggggagggtt ggtgagacaa
     2701 cggcacaagt agaacaggcg gccatcgaaa catttattgc gagagcaaga aatccctgtc
     2761 tcggcggata tccatggctt gagaacaatg aacagccgaa aggaacggtt gcagtttatc
     2821 cgaagaagat tggctatgtt gaatatattg atatggtgaa acttagcaag ctgctgacca
     2881 atgatccccg tcatgtatac ctcgtggcgc agccaggcag tttcatacat ccgtccatgc
     2941 cagttttgta cctgagtcag ggccaggagt cgtcaatcaa caccgattta cttgagacga
     3001 ttattgtctc ggatgcacgt tcatttgctc aggatcctcg attttgtctt agcgtcatgg
     3061 ccgaaatagc ctgccgggcc ctttcccctg cagtgaacga tcctggaacc gccattgatg
     3121 tcattggcag aggtgttcgt atactttcca cttacgcgca gaataaatct gatgaaatag
     3181 aagtgaaata tccttcagta catgttgcac cacttcagaa taacgatcta ctggaagact
     3241 ttttctcacc tgtcgcgcgc gatggtgcca gtatgaggga gattcagata agagtcctta
     3301 aaggactgtc gatgctgagt aaaggttggc ctgagatatt tgctgaagcc gcacataccc
     3361 tggcatttga aacattagag catgcaactc gtgctgacca tatagattct gatagatatc
     3421 taataaaatc aacttattat aatttattta gtggcgaata ttctaataaa aaaaaatagc
     3481 tgcagagcaa gcaattcggt tgttggcaag tcaagggcaa agcattcgcg tgagaatggg
     3541 cgtatgcttt gtgccaaaag caaacgttgc taattctgca ctgttcagcg atggcgcagt
     3601 agcgacaggc actgccactg tccagtcggc aaaagcgaac actttgccac tgcggggata
     3661 aactgattga agctctcgcg caaaatcact tattcttttg acaataaaat gtaggagatg
     3721 ggtcatgaca ggcgaaaatc gtggccgggg aaggccgcga aagacagaaa gtacctatgc
     3781 agatactcgt aatgatctga tccgcagtgg ccttgaactg ctgacgcaga atggttttct
     3841 tgcgacggga gtcgatgcca ttgtgtcaac gacggatgaa aagtgatcca cttatatctc
     3901 caccaacggc ccaatattga tccaccgttt tactcaggat tagcttcagc tataaccccg
     3961 gcctttcgtt tctgtctgag tcgatagctt tctcctttga tttgaacgac atgtgagtgg
     4021 tgtaagatac ggtccagcat cgctgaggtc agtgctgcat caccggcgaa cgtttgatcc
     4081 cactgcccga acggcagatt ggatgtcagg atcattgcgc tcttttcgta acgtttagcg
     4141 atgacctaga agaacagttt tgcttcttcc tgactgaacg gcagatagcc tatttcatca
     4201 atgatgagca ggcggggggc cattactcca cgctgaagcg tcgttttata acggccctga
     4261 cgttgtgccg tagataactg aagtaacaga tctgctgctg ttgtgaagcg aaccttgata
     4321 cctgcacgga ctgcttcata gcccatcgc
//
LOCUS       DADMJB010000231         4323 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.234, whole genome shotgun sequence.
ACCESSION   DADMJB010000231 DADMJB010000000
VERSION     DADMJB010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4323)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4323)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4323
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.234"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..975)
                     /locus_tag="JN078_003921"
     CDS             complement(<1..975)
                     /locus_tag="JN078_003921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF945 family protein"
                     /protein_id="HAY9042941.1"
                     /translation="MIRKSATGVIVALAVIWGGGIWYTGTQIQPGVEKFIKDFNDAKK
                     KGEHAYDMTLSYKNFDKGFFNSHFQMQISFDNGAPDLNIKPGQKVAFDVDVEHGPLPI
                     TMLMHGNVIPALAAAKVNLVNNELTQPLFIAAKNKSPVEATLRFAFGGSFSTTLDVAP
                     AEYGKFSFGEGQFTFNGDGSSLSNLDIEGKVEDIVLQLSPMNKVTAKSFTIDSLTRLE
                     EKKFPVGESESKFNQVNIINQGEDVAQIDAFVAKTRLDRVKDKDYINVNLTYELDKLT
                     KGNQQLGSGEWSLIAESIDPSAVRQFIIQYNIAMQKQLAAHPELANDEV"
     gene            complement(1130..1756)
                     /gene="dsbA"
                     /locus_tag="JN078_003922"
     CDS             complement(1130..1756)
                     /gene="dsbA"
                     /locus_tag="JN078_003922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA"
                     /protein_id="HAY9042942.1"
                     /translation="MKKIWLALAGLVLAFSASAAQYEDGKQYTTLEKPVAGAPQVLEF
                     FSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQAWAVAMALG
                     VEDKVTVPLFEGVQKTQTIRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKA
                     AADVQLRGVPAMFVNGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKK"
     gene            complement(1773..2759)
                     /gene="srkA"
                     /locus_tag="JN078_003923"
     CDS             complement(1773..2759)
                     /gene="srkA"
                     /locus_tag="JN078_003923"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response kinase SrkA"
                     /protein_id="HAY9042943.1"
                     /translation="MNNSAFTFQTLHPDTIMDALFEQGIRVDSGLTPLNSYENRVYQF
                     QDEDRRRIVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFY
                     FAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLF
                     EDATLIPSGLKAAFLKATDELIAAVTAHWREDSTVLRLHGDCHAGNILWRDGPMFVDL
                     DDARNGPAIQDLWMLLNGDKAEQRMQLETIIEAYEEFSEFDTAEIGLIEPLRAMRLVY
                     YLAWLMRRWADPAFPKNFPWLTGEDYWLRQTATFIEQAKVLQEPPLQLTPMY"
     gene            complement(2836..3105)
                     /locus_tag="JN078_003924"
     CDS             complement(2836..3105)
                     /locus_tag="JN078_003924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihD family protein"
                     /protein_id="HAY9042944.1"
                     /translation="MKCKRLNEVIEFLQPAWQKEPDLNLLQFLQKLAKESGFDGELAD
                     LTDDILIYHLKMRDSAKDAVIPGLQKDYEEDFKTALLRARGVIKE"
     gene            3175..3759
                     /gene="mobA"
                     /locus_tag="JN078_003925"
     CDS             3175..3759
                     /gene="mobA"
                     /locus_tag="JN078_003925"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase MobA"
                     /protein_id="HAY9042945.1"
                     /translation="MNLMTTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALM
                     TQLSHVVVNANRHQEIYQASGLKVIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDT
                     PYIPPDLAARLNHQRKDAPVVWVHDGERDHPTIALVNRAIEPLLLEYLQAGERRVMAF
                     MRLAGGHAVDFSDHKDAFVNVNTPEELARWQEKR"
     gene            3741..4268
                     /gene="mobB"
                     /locus_tag="JN078_003926"
     CDS             3741..4268
                     /gene="mobB"
                     /locus_tag="JN078_003926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418293.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HAY9042946.1"
                     /translation="MAGKTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT
                     HHDMDVDKPGKDSYELRKAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKL
                     DLILVEGFKHEEIAKIVLFRDGARHRPEELVIDRHVIAVASDVPLNLDVALLDINDVE
                     GLADFVVEWMQKQNG"
BASE COUNT         1170 a         1022 c          967 g         1164 t
ORIGIN      
        1 aacttcatcg tttgctaact cagggtgtgc agcaagctgc ttctgcatcg caatgttata
       61 ctggatgata aattggcgca ctgctgaggg atcaatagat tcagcaatca atgaccactc
      121 accactaccg agttgctgat tcccttttgt taacttatca agttcgtagg tcagattgac
      181 attgatataa tctttgtctt taacgcgatc cagcctggtt tttgcaacga aagcatcgat
      241 ttgggcaacg tcttccccct gattgataat attaacctga ttaaatttcg actcgctttc
      301 accaaccgga aatttctttt cttctaatcg tgtcagagaa tcaatggtaa aactttttgc
      361 cgttactttg ttcattggtg ataattgcag aacaatatct tcgactttgc cttcaatatc
      421 caggttagac aatgaactac catcaccatt aaaagtaaac tggccctcac caaaagaaaa
      481 ctttccatac tctgcagggg caacatctaa tgtcgtagag aatgagccac caaacgcgaa
      541 tcgcaatgtc gcttccacgg gcgatttatt tttcgcggcg ataaatagcg gttgtgtcag
      601 ttcattattc actaagttca cttttgccgc tgccagtgct gggatgacat taccatgcat
      661 taacattgtg atgggcaacg gaccgtgctc aacatccaca tcaaatgcaa ctttctggcc
      721 tggcttgata ttgagatcgg gtgcaccgtt atcaaatgaa atttgcattt gaaaatggga
      781 attaaaaaag cctttgtcaa agtttttata acttaacgtc atatcgtagg catgttcacc
      841 tttcttttta gcatcgttaa aatctttaat aaatttttcg acaccaggct gaatttgcgt
      901 acctgtgtac catatgccac caccccagat tacggctaac gcaacaataa cacctgtagc
      961 tgacttacgt atcatataaa tattccctga taaaacagca aaactttgaa tatccactta
     1021 tgctgaaata atgtccagcg gcaggatgta ttatcagaat gtatttatat ttattaaata
     1081 ataaaaaaag cccgtgaata ttcacgggct ttatgtaatt tacattgaat tattttttct
     1141 cggacagata tttcactgta tcagcatact gctgaacaaa aacatccata ttgctggtat
     1201 ccataccctg cggattcagc tgatatttac cgttaacaaa catcgccgga acaccgcgca
     1261 attgcacgtc agctgcagct ttttcctgct gagctaccag agatttcacc acgaagctgt
     1321 tccacgccgc gtcgtactct tcacctttaa tacctgcgtt gataaataca tcgcggatat
     1381 cagaagcaga acgaatggtc tgggttttct gtacgccttc aaacagcgga acagtcactt
     1441 tgtcttccac gcccagcgcc atcgccacag cccatgcctg agtcagatct ttgcccaggt
     1501 caccacccat gaagttgacg tggtatttag tcatcttcac gccttccggc agttttttct
     1561 tcacattatc agaaatatgc agaacttctt caaactgata gcagtgcgga cagaagaaag
     1621 agaaaaactc cagcacttgc ggcgcgccag ctaccggttt ttccagggta gtgtactgtt
     1681 taccatcttc atactgcgcc gccgatgcgc taaacgctaa aactaaacca gccagcgcca
     1741 gccaaatctt tttcatgatc tactctctcc gattaataca taggtgttaa ttgtaaaggg
     1801 ggttcttgta gaacttttgc ctgttctata aaagtcgccg tttgtcgcag ccagtaatct
     1861 tccccggtta accacgggaa atttttcggg aacgcgggat cagcccaacg ccgcattagc
     1921 caggcaagat aataaaccaa acgcatggcg cgtaaaggtt caatcagtcc gatttcagcg
     1981 gtgtcgaact cgctaaattc ttcataagct tcaataatag tttccagttg catccgctgc
     2041 tcggctttat cgccattgag caacatccac aaatcctgaa tagctggacc attacgtgca
     2101 tcatccagat caacaaacat tggaccatcg cgccagagaa tattcccggc gtggcagtct
     2161 ccatgtaagc gcagaacggt ggaatcttcc cgccagtgcg ctgtaacggc ggcgatcagc
     2221 tcatctgtcg ctttcaggaa tgccgctttc aacccggaag gtatcagtgt agcgtcctca
     2281 aacagcttgc gtggctcaat gagatattca ttcagaccga tggtcgggcg atggataaaa
     2341 agctgtttgc gccccgtctg gtgcatacgc cctaaataac gcccaaccgc ttccatctga
     2401 tcgatattat cagcttcgaa ctggcgacca ccgacgcttg gaaaaacagc gaaataaaat
     2461 ccctgatgat tcaataaagt ctgaccgtta aaggccacag gtgctgcgac cggaacttca
     2521 tcatttacca actgcaacgc aaattgatgt tcttcgagga tttgatcggc tgtccaacgt
     2581 tcagggcgat aaaatttgac gacaatacgt cgacgatctt cgtcctgaaa ttgatagaca
     2641 cggttttcat agctgttaag cggggtaaga ccggaatcca cccggatccc ttgctcaaat
     2701 agagcatcca tgatggtatc cgggtgtagt gtctggaaag taaaagcgct gttgttcatc
     2761 ccatcatccg gaaaacatta cgaatgatga aggatatcat ttcacgatga ttttggtggc
     2821 gccgcttaca agcttttact ctttaattac gccgcgagcg cgtaacagcg ccgttttgaa
     2881 gtcttcttca taatctttct gcaaacccgg gatcaccgca tctttcgcgg aatcacgcat
     2941 tttcaggtga tagatcagaa tgtcatccgt caaatccgcc agttcgccgt caaaacctga
     3001 ctctttcgcc agtttctgca aaaattgcaa caggttaagg tctggctctt tttgccaggc
     3061 tggctggagg aattcaataa cttcattcag acgtttacat ttcatagtga tgctccttac
     3121 tcttgagaca gacacgttag cagggtcaat cccacaataa aagaggcgat atcggtgaat
     3181 ctgatgacga cgataacagg cgttgtgctg gcaggcggta aagccagacg aatgggtggc
     3241 gtagataaag gattgcttga attaaacggc aaaccattat ggcaacatgt cgctgacgcg
     3301 cttatgacgc agctctctca cgtcgtggtt aatgccaatc gtcatcagga aatctatcag
     3361 gcaagcggtc tgaaagtgat tgaagattca ctggcggatt acccaggccc tctggcagga
     3421 atgctttcag taatgcagca ggaagctggt gagtggtttt tgttttgccc gtgcgatacg
     3481 ccttacattc cccctgattt agcagcccgg cttaatcatc agcgcaaaga tgcgcctgtc
     3541 gtgtgggtcc atgacggtga acgcgatcac ccgactattg ctctggtaaa ccgcgctatt
     3601 gagcctttat tactggaata tctgcaagca ggagaacgcc gggtaatggc atttatgcgt
     3661 ctggctggcg gtcatgcggt tgatttcagc gatcataaag atgcatttgt taacgtgaat
     3721 acgccagagg agcttgcccg atggcaggaa aaacgatgat accgttactc gcctttgccg
     3781 cgtggagtgg taccggaaaa actacgcttt tgaaaaaact gatcccggca ttatgcgcca
     3841 gagggatccg tccagggctg attaagcata cgcaccatga tatggatgtt gataagccag
     3901 gcaaagatag ctatgagctg cgcaaggctg gcgcggcaca aaccatcgtt gccagccagc
     3961 aacgatgggc cttgatgacg gaaacaccag acgaagaaga gctggatcta cagtttctcg
     4021 caagtcgaat ggatacctca aagctggatt tgattctggt cgaagggttt aagcatgaag
     4081 agatcgcaaa gattgtgctg tttcgcgatg gagccagaca tcgacctgaa gaattagtga
     4141 tagacaggca tgttattgct gtagccagtg atgtgccgct taatcttgat gtcgcattac
     4201 tggatattaa tgatgttgag gggctggctg attttgtggt ggagtggatg caaaagcaga
     4261 acggataagc aagagtaggc tggatcagac gcagccagtg tcgcatccga cctttttctg
     4321 cac
//
LOCUS       DADMJB010000232         4301 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.235, whole genome shotgun sequence.
ACCESSION   DADMJB010000232 DADMJB010000000
VERSION     DADMJB010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4301)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4301)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4301
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.235"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..465
                     /locus_tag="JN078_003927"
     CDS             <1..465
                     /locus_tag="JN078_003927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014837283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042947.1"
                     /translation="LPISAADKRRFYYYFQEKNTPNIERFFVFDSSEYRYALNMREVV
                     FHQFLSDGLRPIVDEDDDAYEDDYFNVHITLVNGGPVIPLSVEPDAPQNEETDDIGQL
                     NAFFDALDCEPETTDRFMITDEDGEDAFIRIGSIAMVRVALDVLEPVEDDDE"
     gene            712..1977
                     /locus_tag="JN078_003928"
     CDS             712..1977
                     /locus_tag="JN078_003928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001642584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HAY9042948.1"
                     /translation="MALTDIKVRAAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYRY
                     EGKQKMLALGVYPEITLADARVRRDEARNLLANGVDPGDKKKNDKVEQSKARTFKEVA
                     IEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEV
                     AARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDS
                     YTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGS
                     KMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDT
                     KVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMERNSVRAAYIHKAEHLEERRLML
                     QWWADFLDVNRERFISPFEYAKINNPLKQ"
     gene            complement(2378..2823)
                     /locus_tag="JN078_003929"
                     /pseudo
     CDS             complement(2378..2823)
                     /locus_tag="JN078_003929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001469741.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            3404..3633
                     /locus_tag="JN078_003930"
                     /pseudo
     CDS             3404..3633
                     /locus_tag="JN078_003930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001546148.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
     gene            3976..4119
                     /locus_tag="JN078_003931"
     CDS             3976..4119
                     /locus_tag="JN078_003931"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042949.1"
                     /translation="MSLDPLACGHDNVKQSKIVALTVSLGDKKAQYSRWQPDNLTVDA
                     ETK"
BASE COUNT         1147 a          948 c         1047 g         1159 t
ORIGIN      
        1 ttgcccattt cagcagcgga taagcggagg ttttattatt attttcagga aaaaaacacc
       61 ccaaacatag aacgcttctt cgtttttgat tcttccgagt atcgttatgc gttaaatatg
      121 cgtgaagtgg tatttcatca gttcctttct gatggtctgc ggccaatcgt tgacgaagac
      181 gatgatgcct acgaagacga ttattttaat gtccatatca cgctggtaaa cggcggacca
      241 gtgattccac tgagtgttga gccagatgcg ccgcaaaacg aagagacgga tgatatcggc
      301 cagttgaatg cattttttga cgcgctggat tgcgagcctg aaaccacgga tcgttttatg
      361 ataaccgacg aagatggaga agatgctttc attcgtattg gttctatcgc tatggtgcga
      421 gttgcgcttg atgtgctgga accagtggaa gacgatgatg agtagtattg aatggattga
      481 tttcatattg ttgagtctgg aatcgcggtg cggccttcgg caccaaaagt atgtaaatag
      541 acctcaactg aggtcttttt ttatgcctga aatccagtgt ttatctatct ttcccgctat
      601 attaactctc tcaaggtcaa ccgatatcaa cgtacatcta ccaacatatg ttggtacaga
      661 tgatggtatt tccggttcga taatgcttgt accaacaggg agggaatacg catggcatta
      721 acagatatca aagtcagagc agccaagcca acggataagc aatataagct gactgatggt
      781 ggcggtatgc atctgcttgt ccatccaaat ggttctaagt actggcgttt gcagtaccgt
      841 tatgagggaa agcaaaaaat gctggcactt ggggtttatc ctgaaatcac actagcggat
      901 gccagagtac gtcgtgacga ggcgcgtaac ctgcttgcga atggcgtcga tccgggagac
      961 aaaaagaaaa atgataaggt tgaacagagt aaagcacgaa cctttaaaga agtcgcgatt
     1021 gagtggcatg gcaccaataa aaagtggtct gaagatcacg cccatcgtgt gctaaaaagt
     1081 cttgaagata atctttttgc agcgcttggt gaacgtaata tcgctgagtt aaaaactcga
     1141 gatttattag cacctattaa ggccgtagaa atgtctggac gtcttgaagt ggccgctcgt
     1201 cttcagcagc gcactacagc catcatgcgc tatgcagtgc aaagtgggtt aattgattat
     1261 aacccggcac aagagatggc tggggcggtt gcttcctgta atcgacaaca tcgtcccgcg
     1321 cttgaattaa agcgcatccc tgagttgctt acaaaaatag atagctatac tggtaggccg
     1381 ctaacccgat gggcgataga actcactttg ctgatcttta ttcggtccag tgagctgcgt
     1441 tttgctcgtt ggtcagagat cgatttcgaa gcgtctatat ggactatccc accggagcgg
     1501 gagcctattc ctggagtgaa acattcccat agaggctcaa aaatgcgtac aactcatcta
     1561 gtgcctcttt caacgcaagc tcttgcaatt ttaaagcaga taaaacagtt ttatggggcc
     1621 catgacttga tatttattgg tgatcacgat tcgcacaaac ccatgagtga gaatacggta
     1681 aatagtgcgt tacgggtcat ggggtatgat acaaaagtag aggtttgtgg tcatggcttt
     1741 cgaacaatgg cctgtagttc attggtcgaa tcaggtttgt ggtctcgtga tgctgttgaa
     1801 cgtcagatga gccacatgga gcgaaattca gtgagggccg cgtatatcca taaagcagag
     1861 catctggaag aacggcgatt gatgctacag tggtgggccg attttctgga tgtaaacaga
     1921 gaaagattta tcagtccatt tgaatatgca aagattaata atccattaaa acagtaatca
     1981 tcccgggcaa atgcccggga attattctag gattattttc tttgttaaaa aagacaaacg
     2041 gtattaactg atgtatttac tatttaccgc tccctgcagg ggggattatc agaatccgcg
     2101 gttattcatt atttatatac tttcaataaa aaagtaacct cataaaaaat cctgtactca
     2161 cagggtgatg cgggataact gacgtaagga gtgctgcagg gatttgatgg tcccttgtgc
     2221 tgatatgaat acggatattt tatacagaat acttttcagt acaagcgact gtattacagt
     2281 ctgccatata tgattacctg tgatcaggaa gaataagtgg ctgaggtttc aaactgtctg
     2341 ccggtatatt cctctctccc ttaaaaacca taacagttta attatcttcg tctgtcagcg
     2401 gattgaatgg cggtatattt tcagtacaaa taccggtcat ccactgaaaa atacctgcga
     2461 aatgacgggc actgattttt ctactgacgg gctgatgaga cgttatgtca ctgacatata
     2521 atccctgcgc acactctcac cagtgacaat aacaatcgta tcatataacg gtgctcccgg
     2581 ctggattttc cagttgtcag ccccgtgctg actcagttgt tcataacgct gcatttcacg
     2641 taatgtgtca gttgtcccca caactgttcc tttaaccatc cgcaatggcc aacggtttac
     2701 agagcataat acgaatagcc gtagagccag ccagttacgg tggtcgcgat ggtgtgtccg
     2761 ccagaaaatc accacgaata ccagaatcgc ggcactgacc agaaaatgat aaacaggaaa
     2821 cacggggcgg ttcactttgc tttctcctgt agtgttttct gtaggttctg aaccggttcg
     2881 agcggggttg tgaggctgat ggcaatcccc gggctcttcc tgcatgttac actggtactg
     2941 caagaggggg ccttcgctcc tctgacatta ctcagtattt tcactactac accccatctg
     3001 ccatccataa caaccgattc accccctcgc gaggcgttgt tgcccgtcac ccggacagac
     3061 atcgttatgg atttctcttg ttgcacgatc gatcaattgt tatgcatgct gacaccacaa
     3121 ccccggtggg tatgaccgat gcctttctca ctcttttccc ggtcatcgtc ggccttcccc
     3181 gttattgtgg agtgtcagca ccctcgacgg catttcgatg gctgctcagt gttcactcac
     3241 gttacggccc gcataacccg ttgacttcct gaagaagtcg tttcagggag agattcagcc
     3301 cttttgttac ctcctggacc gcttcttgtc cttccagtcg gagcgagagt tagccggggc
     3361 ggactttcac cgacggaaag atcgtgcatt tcaaggcaca cacaacaata tctgcgagcg
     3421 tgctatccgt ccggtcgtta tgggacgaaa ggcctggttg ttcgctggtt cactgatggc
     3481 cgggaaccgc gcggcacaga taatgagcct tctgggaacc gcagtctgga gccacatgct
     3541 tggctgacgg acgtcctgac gcgtctgccg gagtggccgg aggagaggtt ggctgagtta
     3601 ctgcctcttg agggctttac cttcttcggg taagtgatac ctgccgtcag gtgtttgtgc
     3661 accgggccat aacctgcagt tgggaattga acgcctgaca acaggaaatg agctagagca
     3721 gtaaacacgc gggctgacaa tgggtcagaa tatgagtcag cccggcgtta ttcctggggt
     3781 cagtacttca gatccagcct ccggtaccag actagctagc ccctacgcaa ccaaataaat
     3841 caaccatcgt cagagtgcaa tcgttcatat acactgtcgg tgatgcgctg aaaaatgcgt
     3901 taatgttgag ttcctcgaac ccttaccaat taagggacat agccagatac gcaactggct
     3961 gatgcaagca gtctaatgtc tttagatccg ctggcctgcg ggcatgacaa tgtcaaacag
     4021 tcaaagattg tggcgttgac ggtcagtctt ggggacaaaa aagctcagta ttctcgttgg
     4081 cagccagata atttaacagt tgatgctgaa acgaaatagg catcttggtt ctggtgtttg
     4141 taacaaacta tcagctacaa aaatatgctc aatttgtgac atcagtaaca aaacgcgttt
     4201 tgttatgtgg attgcttgtt ttttgatctg gtataacagg tataaaggta tacagaaaag
     4261 caaagaaata ctgcaaagga aaacagctat aacgtaagct a
//
LOCUS       DADMJB010000233         4295 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.236, whole genome shotgun sequence.
ACCESSION   DADMJB010000233 DADMJB010000000
VERSION     DADMJB010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4295
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.236"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            47..2209
                     /gene="ybiO"
                     /locus_tag="JN078_003932"
     CDS             47..2209
                     /gene="ybiO"
                     /locus_tag="JN078_003932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001267224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel protein"
                     /protein_id="HAY9042950.1"
                     /translation="MRWILFILFCLLGAPAHAVSIPGVTTTTTTDSTTEPAPEPDIEQ
                     KKAAYGALADVLDNDTSRKELIDQLRTVAATPPAEPVPKIVPPTLVEEQTVLQKVTEV
                     SRHYGEALSARFGQLYRNITGSPHKPFNPQTFSNALTHFSMLAVLVFGFYWLIRLCAL
                     PLYRKMGLWARQKNRERSNWLQLPAMIIGAFIIDLLLLALTLFVGQVLSDNLNAGSRT
                     IAFQQSLFLNAFALIEFFKAVLRLIFCPNVAELRPFTIHDETARYWSRRLSWLSSLIG
                     YGLIVAVPIISNQVNVQIGALANVIIMLCMTVWALYLIFRNKKEITQHLLNFAEHSLA
                     FFSLFIRAFALVWHWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFVSG
                     MFSRWLAKTITLSPHTQRNYPELQKRLNGWLSAALKTARILTVCVAVMLLLSAWGLFD
                     FWNWLQNGAGQKTVDILIRIALILFFSAVGWTVLASLIENRLASDIHGRPLPSARTRT
                     LLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGV
                     FIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGI
                     GSVVANYDVDRHEDADKANQALKDAVAELMENEEIRGLIIGEPNFAGIVGLSNTAFTL
                     RVSFTTLPLKQWTVRFALDSQVKKHFDLVGVRAPVQTY"
     gene            complement(2269..3195)
                     /gene="rlmF"
                     /locus_tag="JN078_003933"
     CDS             complement(2269..3195)
                     /gene="rlmF"
                     /locus_tag="JN078_003933"
                     /EC_number="2.1.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415328.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(1618)-N(6))-methyltransferase
                     RlmF"
                     /protein_id="HAY9042951.1"
                     /translation="MSAQKLGLHPRNRHHSRYDLATLCQVNPELRQFLTLTPAGEQSV
                     DFANPLAVKALNKALLAHFYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIP
                     ANASILDIGVGANCIYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLR
                     RQKESGAIFNGIIHKNEQYDATLCNPPFHDSAAAARAGSERKRRNLGLNKDDALNFGG
                     QQQELWCEGGEVAFIKKMIEESKGFAKQVMWFTSLVSRGENLPPLYRALTDVGAVKVV
                     KKEMAQGQKQSRFIAWTFMNDEQRRRFVNRQR"
     gene            3471..3730
                     /locus_tag="JN078_003934"
                     /pseudo
     CDS             3471..3730
                     /locus_tag="JN078_003934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415327.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
     gene            3995..>4295
                     /locus_tag="JN078_003935"
     CDS             3995..>4295
                     /locus_tag="JN078_003935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HAY9042952.1"
                     /translation="MENNRNFPARQFHSLTFFAGLCIGITPVAQALAAEGQTNADDTL
                     VVEASTPSLYAPQQSADPKFSRPVADTTRTMTVISEQVIKDQGATNLTDALKNVPG"
BASE COUNT          999 a         1129 c         1076 g         1091 t
ORIGIN      
        1 agcatctata cttatctttt tgctctgttt tctcactgga ggagtcatgc ggtggatcct
       61 gttcatcctc ttctgcctgc tgggcgcacc tgcccacgcg gtatccatac ccggcgttac
      121 aaccacaacg acaacggact caacgactga accggccccg gaaccggata tcgaacaaaa
      181 aaaagcggcc tatggcgcac tggcggatgt gctggataac gacacctcgc gtaaagaatt
      241 gatcgaccag ttgcgtactg tcgccgcgac gccccctgcg gaaccggtcc cgaagatcgt
      301 gccgccgacg ctggttgaag agcaaaccgt gctgcaaaag gtcaccgaag tcagccgcca
      361 ttatggtgaa gccctttccg cccgcttcgg gcaactttat cgcaatatta ccggctcccc
      421 gcataagccg tttaatccac aaacattcag caatgcgctg acccattttt caatgttagc
      481 ggtattagtg tttggttttt actggctgat tcgcctgtgc gcactgccgc tgtatcgcaa
      541 aatgggcctg tgggcgcggc aaaaaaatcg tgagcgcagt aactggttgc agcttccggc
      601 gatgattatc ggggcgttta ttatcgacct actgttactg gcactgacat tatttgtcgg
      661 ccaggtatta agcgacaacc tgaatgcagg cagtcgcacc atcgctttcc aacaaagttt
      721 gtttctcaac gcctttgccc tgattgaatt tttcaaagct gtactacgcc tgattttttg
      781 cccaaacgtg gctgaactgc gcccgttcac gattcatgac gagaccgccc gttactggag
      841 tcgtcgcctg agctggttaa gcagtttgat aggttatggc ctgattgtgg ccgtgccgat
      901 tatctctaat caggtgaatg tacagatagg tgcgctggcg aacgtcatca ttatgctgtg
      961 catgaccgtc tgggcgttgt acctgatctt tcgcaataaa aaagagatta cccaacattt
     1021 gctcaacttt gcggagcatt cgctggcctt tttcagcctg tttatccgcg cctttgcgct
     1081 ggtgtggcac tggctggcaa gcgcctattt tatcgtgctg tttttctttt cgttgttcga
     1141 tccgggcaac agcctgaaat ttatgatggg tgcaacggtg cgcagcctgg cgattattgg
     1201 tatcgcagcg tttgtttccg gtatgttttc ccgctggctg gcgaaaacca tcaccctctc
     1261 gccacatact cagcgtaact atccggagtt gcaaaaacgg ctgaatggct ggctttcggc
     1321 ggcgctgaaa acggcgcgta ttctgaccgt ctgcgtggcg gtaatgttgc tgttgagcgc
     1381 atggggattg ttcgatttct ggaactggct gcaaaacggc gcggggcaga aaaccgtaga
     1441 tatcctgatc cgtatcgcac ttattctttt tttctcggcg gttggctgga cggtgctcgc
     1501 cagtttgatc gaaaaccggc tggcttcgga tattcatggc cgcccgctac ccagcgcccg
     1561 tacgcgtacc ctgctgacgc tgtttcgtaa cgcgctggcg gtgattatca gtaccatcac
     1621 catcatgatt gtgttgtcgg aaatcggcgt caatatcgcg ccattgctgg caggtgccgg
     1681 ggcattaggt ctggctatct cgtttggttc gcaaacgctg gtgaaagata tcattaccgg
     1741 ggtgtttatt cagtttgaaa acggcatgaa cactggagat ttggtgacta tcgggccgtt
     1801 gaccggcaca gtggaacgga tgtcgattcg ctccgtgggc gtgcgccagg ataccggggc
     1861 gtatcacatc attccgtggt cttcgataac cacctttgct aacttcgtcc gcggtattgg
     1921 ttcggtagtg gcaaactacg atgttgatcg ccatgaagat gctgataaag ccaatcaggc
     1981 actgaaagat gcggtagcgg aattgatgga aaacgaagaa attcgcgggc tgattattgg
     2041 tgaaccgaat tttgccggga ttgtcggctt aagcaatacc gcgtttacac tgcgtgtttc
     2101 gttcaccacg ctgccactca aacagtggac ggtacgcttt gccctcgaca gccaggtgaa
     2161 aaaacatttc gacctggtgg gcgttcgcgc gccagtgcag acttattagg tgctgcctac
     2221 tccgggcgcg accccggctg aaccgttacc gccgggggag ccaacgcttt aacgctggcg
     2281 attgacaaaa cggcggcgct gctcgtcgtt cataaaggtc caggcaataa agcgactctg
     2341 cttttgcccc tgggccatct ctttttttac caccttcacc gcgcccacgt cggtcagagc
     2401 acgatacaac ggcggtaagt tttcaccacg agataccagc gaggtaaacc acatcacctg
     2461 cttcgcgaag cctttgctct cttcaatcat ctttttgata aaggcgactt caccaccttc
     2521 acaccacaac tcctgttgct gaccaccaaa gttcagtgca tcgtctttgt tcagccccag
     2581 gttacggcgt ttacgctcac tacctgcccg cgctgcagcg gcggaatcgt ggaatggcgg
     2641 gttacacaag gtcgcgtcgt attgctcgtt tttatggatg atgccgttaa aaattgcccc
     2701 actctctttt tgccgacgca gacgaatggc gcggttaagc cccggattag cactgataat
     2761 cgcctgcgca ctgcttaacg cctggctgct ggtttcacta ccggtaaaac gccagccata
     2821 ttcatgtacg ccaatcagcg gataaataca gttcgcacca acgccgatat ccagaatgct
     2881 ggcattcgct ggaattgttc cgcttgcttc agccagtaaa tcggcaaggt gatgaatata
     2941 atccgcccgg ccgggtactg gtgggcagag aaaaccgtcg gggatatccc agttcgctac
     3001 ggcgtaaaaa tgggccagca acgccttatt gagcgccttc accgccagcg gattggcaaa
     3061 gtctacgctt tgctccccgg cgggtgtaag cgtgaggaat tgcctgagtt caggattgac
     3121 ctgacaaagc gtggcgagat cgtagcggct gtgatgacgg ttgcgcggat gcaaccccag
     3181 tttctgggcg gacatagcat tctcctttaa gcagcggcgt aagatacccg cataacgcga
     3241 cagggtaaat atctggctgc gtttatcatt ccccaaaacc ttaacatggc tatggtttat
     3301 ggcaattcat cataaaaatc agcattatgc atgtcattga tttgtcttat tttgtaaaaa
     3361 tatatcgttc aaaaaataag cacatctctg tcaatttttt gcgtcatttg catcgcgcag
     3421 gcgacctaca cttatcaggc actacccgtt gtatttatga ggatgtcatt atgaaaaagt
     3481 gcctcacact actgattgcc accgtcctga gcagaatctc tctcacggct tatgccgcgc
     3541 aaccgatgag taacctggac agcggtcagc tacggcccgc ggtaccgttt cggcaactgg
     3601 cgcatcaaac ctaagcgatc tggaggataa actggcagaa aaagcgcgcg aacaaggcgc
     3661 gaaaggttat gtcattaatt ccgcaggcgg aaatgaccag atgttcggta ctgcaaccat
     3721 ctacaaataa ccccaccaac gtaactgcat tcgcctctgg atgcagtttt cgcctgtttt
     3781 gtaatcaaaa aacatcaaat atgaactcaa tgtaaataaa tgtatttctt tttcgcgcaa
     3841 tgggtgatag aaaatcgcgc caagtgataa tgtttatcaa aattattatc acttgcatga
     3901 acactatcac gggattaaca gtggcatcgc atccgcagag atgctttctc gtgacagtga
     3961 aaatttcaac atataagaaa aagtcacctg caaaatggaa aacaatcgca atttccctgc
     4021 cagacaattt cattcgctca cgttctttgc cggtctttgt attggcatca cgcctgtggc
     4081 tcaggcactc gccgccgaag ggcaaactaa cgcggatgac acgctggttg tcgaagcatc
     4141 aacgccttcg ctttatgcgc cacaacaatc tgccgatccg aaattctcgc gtccggtagc
     4201 ggatactacc cgcacgatga cggtgatttc tgaacaagtg attaaagatc agggcgcaac
     4261 caaccttacc gacgcgctca aaaacgtccc cggcg
//
LOCUS       DADMJB010000234         4267 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.237, whole genome shotgun sequence.
ACCESSION   DADMJB010000234 DADMJB010000000
VERSION     DADMJB010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4267)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4267)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4267
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.237"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..213)
                     /locus_tag="JN078_003936"
     CDS             complement(<1..213)
                     /locus_tag="JN078_003936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416381.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HAY9042953.1"
                     /translation="MLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKF
                     RASGQPVFLVRVGWSADYAEALKQPVD"
     gene            523..2295
                     /gene="aspS"
                     /locus_tag="JN078_003937"
     CDS             523..2295
                     /gene="aspS"
                     /locus_tag="JN078_003937"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HAY9042954.1"
                     /translation="MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI
                     VQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTII
                     NRADVLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDI
                     ETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRD
                     EDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAE
                     RRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQI
                     DEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEAILDRTAAQDGDMI
                     FFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHP
                     FTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEE
                     EQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTE
                     APSFANPTALAELSIQVVKKAENN"
     gene            2413..2865
                     /gene="nudB"
                     /locus_tag="JN078_003938"
     CDS             2413..2865
                     /gene="nudB"
                     /locus_tag="JN078_003938"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HAY9042955.1"
                     /translation="MKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVE
                     EGETAPQAAMREVKEEVTIDVVAEQLTLIDSQRTVEFEIFSHLRHRYAPGVTRNTESW
                     FCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINAA"
     gene            2894..3634
                     /locus_tag="JN078_003939"
     CDS             2894..3634
                     /locus_tag="JN078_003939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HAY9042956.1"
                     /translation="MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPD
                     ANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECL
                     SDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVITFEKGDEDTIMEAALEAGAE
                     DVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMR
                     LIDMLEDCDDVQEVYHNGEISDEIAATL"
     gene            3669..4190
                     /gene="ruvC"
                     /locus_tag="JN078_003940"
     CDS             3669..4190
                     /gene="ruvC"
                     /locus_tag="JN078_003940"
                     /EC_number="3.1.22.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005068993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HAY9042957.1"
                     /translation="MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSR
                     LKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY
                     AARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQM
                     SESRLNLARGRLR"
BASE COUNT         1054 a         1060 c         1199 g          954 t
ORIGIN      
        1 atcaaccggc tgttttaatg cttcggcgta atcggcagac cagccaactc gcaccagaaa
       61 cacgggctga ccgctggcgc gaaatttcgc cgccagcttc ccggcgcgat taactacctc
      121 atcggcagta tgtggaccac cggcaaaagg taagatgcct tcttgtaaat cgatcaccac
      181 caacgcagtg gttttagcat taagttcaag catgctgact cctgaaaaaa caaaatcgtg
      241 cctcacacct taatgcgatt agccgatggc ggaacgacaa attttgttaa tttttatgag
      301 ttcgggcaac acctttatag caaactggcg tagagtctga tttcaggccc gatataaagt
      361 ggtaacgagg cgttccagcg cgggctaggc tcttacggtg cggcagaatt tccagtataa
      421 tagccgcctt ttttcattca gttgtgacat acagctaacg ctgcgacttg gtcacctgcg
      481 cagcaggggg catccgccgg cagctaagtt aagggatatc tcatgcgtac agaatattgt
      541 ggacagctcc gtttgtccca cgtggggcag caggtgactc tgtgtggttg ggtcaaccgt
      601 cgtcgtgatc ttggtagcct gatcttcatc gatatgcgcg accgcgaagg tatcgtgcag
      661 gtatttttcg atccggatcg tgcggacgcg ttaaagctgg cctctgaact gcgtaatgag
      721 ttctgcattc aggtcacggg caccgtacgt gcgcgtgacg aaaaaaatat taaccgcgat
      781 atggcgaccg gcgaaatcga agtgctggcg tcctcgctga ctatcatcaa ccgcgcagat
      841 gttctgccgc ttgactctaa ccacgtcaac accgaagaag cgcgtctgaa ataccgctac
      901 ctcgacctgc gtcgtccgga aatggctcag cgcctgaaaa cccgcgctaa aatcaccagc
      961 ctggtgcgcc gttttatgga tgaccacggc ttcctcgaca tcgaaactcc gatgctgacc
     1021 aaagccacgc cggaaggcgc gcgtgactac ctggtgcctt ctcgtgtgca caaaggtaaa
     1081 ttctacgcac tgccgcaatc cccacagttg ttcaaacagc tgctgatgat gtccggtttt
     1141 gaccgttact atcagatcgt taaatgcttc cgtgacgaag acctgcgcgc tgatcgtcag
     1201 cctgagttta ctcagatcga tgtggaaact tctttcatga ccgcgccgca agtgcgtgaa
     1261 gtgatggaag cgctggtgcg tcatttgtgg ctggaagtga agggcgtgga tctgggcgat
     1321 ttcccggtaa tgacctttgc ggaagcagaa cgccgttatg gttctgataa accggatctg
     1381 cgtaacccga tggaactgac cgacgttgcc gatctgctga aatctgttga gtttgcagta
     1441 tttgcggggc cggcgaacga tccgaaaggc cgtgttgccg ctctacgtgt tccgggtggc
     1501 gcatcgctga cccgtaagca gatcgacgaa tacggtaact tcgttaaaat ctacggcgcg
     1561 aaaggtctgg cttacatcaa agttaacgaa cgcgcgaaag gtctggaagg tatcaacagc
     1621 ccggtagcga agttccttaa tgcagaaatc atcgaagcca tcctggatcg tactgccgcg
     1681 caagatggcg atatgatttt cttcggtgcc gacaacaaga aaattgttgc cgacgcgatg
     1741 ggcgcactgc gcctgaaagt gggtaaagac cttggtctga ccgacgaaag caaatgggca
     1801 ccgctgtggg ttatcgactt cccgatgttt gaagacgacg gtgaaggcgg cctgacggca
     1861 atgcaccatc cgttcacctc accgaaagac atgactgctg cagaactgaa agctgcaccg
     1921 gaaaatgcgg tggcgaacgc ttacgatatg gtcatcaatg gttacgaagt gggcggtggt
     1981 tcagtacgta tccataatgg tgatatgcag cagacggtgt ttggtattct gggtatcaac
     2041 gaagaggaac agcgcgagaa attcggcttc ctgctcgacg ccctgaaata cggtactccg
     2101 ccgcacgcag gtctggcatt cggtcttgac cgtctgacca tgctgctgac tggcaccgac
     2161 aatatccgtg acgttatcgc cttcccgaaa accacggcgg cagcgtgtct gatgactgaa
     2221 gcaccgagct ttgctaaccc gactgcactg gctgagctga gcattcaggt tgtgaagaag
     2281 gcagagaata actgatatga ctcaaataca cgaaatcatt cgcgttgcat caaggcggca
     2341 attgagtgaa ctcccatgag catagataac tatgtgaatg ggatgagcga aggcagtcaa
     2401 cgaagaggca gcgtgaagga taaagtgtat aagcgtcccg tttcgatctt agtggtcatc
     2461 tatgcacaag atacgaaacg ggtgctgatg ttgcagcggc gtgacgatcc cgatttctgg
     2521 cagtcggtaa ccggcagcgt ggaagagggt gaaaccgcgc cgcaagctgc catgcgcgaa
     2581 gtaaaggaag aggtcaccat tgatgttgtc gctgaacaac tgaccttaat tgacagtcag
     2641 cgcacggtag agtttgaaat tttttcacat ttacgtcatc gctatgcgcc gggcgtgacg
     2701 cgtaatacgg aatcatggtt ctgtcttgcg cttccgcacg agcggcagat cgttttcact
     2761 gaacatctgg cttacaagtg gcttgatgcg cctgctgcgg cggcgctcac taagtcctgg
     2821 agcaaccggc aggcgattga acagtttgta attaacgctg cctgaacagg cagggctatc
     2881 tggagatatt tttatggcag gtcatagtaa atgggccaac accagacatc gtaaagctgc
     2941 gcaggatgct aagcgcggta aaatcttcac taaaatcatt cgtgagctgg taaccgcggc
     3001 taagctgggc ggtggcgatc cggacgctaa cccgcgtctg cgtgcggcgg tggataaagc
     3061 actgtctaac aacatgaccc gtgacacact gaaccgcgca attgcacgtg gtgtgggcgg
     3121 tgatgatgat gcaaacatgg aaaccatcat ctacgaaggt tacggtcctg gcggcacggc
     3181 aatcatgatt gaatgtctgt ctgacaaccg caaccgtacc gttgctgaag tgcgtcatgc
     3241 attcagcaaa tgtggcggta acctcggtac agatggttcc gtagcctatc tgttcagcaa
     3301 aaaaggcgtg atcaccttcg agaaaggcga tgaagacacc atcatggaag cagctctgga
     3361 agcaggtgct gaagacgttg tgacctatga tgacggcgcg attgatgtct acactgcatg
     3421 ggaagaaatg ggtaaagtgc gcgacgctct ggaagcggca ggtctgaaag cagacagcgc
     3481 ggaagtttcc atgatcccgt ccaccaaagc tgatatggat gcagaaaccg caccgaaact
     3541 gatgcgtctg atcgatatgc tggaagattg cgacgacgtg caggaagttt accataacgg
     3601 tgaaatctct gatgagattg cagcgactct ctgatgaggc ctgctaaaca gcaaaacgga
     3661 gacgcgtgat ggctattatt ctcggcattg acccgggttc gcgcgtgacc ggctatggcg
     3721 tcatccgcca ggtaggcagg caactgtcct acctgggtag cggatgcata cgcaccaagg
     3781 tggatgattt accgtctcgt ctgaagctca tctatgcggg cgtgacggaa atcatcaccc
     3841 agttccagcc agattatttc gccattgaac aagtctttat ggccaaaaat gccgactcgg
     3901 ctctgaaact ggggcaggcg cgcggcgtgg cgattgtggc ggcggtgaat caggaattgc
     3961 cggtatttga atatgcggca cgtcaggtaa agcaaacggt ggtaggtatt ggtagtgccg
     4021 aaaaaagtca ggtgcagcat atggtccgca ccttgctgaa actgcccgct aatccacagg
     4081 cggatgccgc cgatgcgtta gctatcgcga ttacccattg tcacgtcagc cagaatgcaa
     4141 tgcagatgag cgaatcgcgg ctgaacctgg cgagagggcg actgcgttaa gttataccgc
     4201 ctcggtcagt tcaggctgag gcgtttcaac tccctccgcg tgaatcaaca ccaaacccgg
     4261 atgatgc
//
LOCUS       DADMJB010000235         4189 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.238, whole genome shotgun sequence.
ACCESSION   DADMJB010000235 DADMJB010000000
VERSION     DADMJB010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4189)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4189)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4189
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.238"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            112..615
                     /gene="yeaK"
                     /locus_tag="JN078_003941"
     CDS             112..615
                     /gene="yeaK"
                     /locus_tag="JN078_003941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mischarged aminoacyl-tRNA deacylase"
                     /protein_id="HAY9042958.1"
                     /translation="MTEMAKGSVTHQRLIALLSQEGANFRVVTHEAVGKCEAVSEIRG
                     TALGQGAKALVCKVKGNGVNQHVLAILAADQQADLSQLASHIGGLRASLASPAEVDEL
                     TGCVFGAIPPFSFHPKLKLVADPLLFERFDEIAFNAGMLDKSVILKTTDYLRIAQPEL
                     VNFRRTA"
     gene            complement(616..720)
                     /locus_tag="JN078_003942"
     CDS             complement(616..720)
                     /locus_tag="JN078_003942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416302.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042959.1"
                     /translation="MNDQMFVETLIITSSFFAIAVVLVLSVLLIERTG"
     gene            889..1321
                     /locus_tag="JN078_003943"
                     /pseudo
     CDS             889..1321
                     /locus_tag="JN078_003943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416303.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
     gene            complement(1278..2099)
                     /locus_tag="JN078_003944"
     CDS             complement(1278..2099)
                     /locus_tag="JN078_003944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAY9042960.1"
                     /translation="MMHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLI
                     LALHGAITCTVENALWMVPPQYAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPTTC
                     CTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKI
                     RTMVEMMAKGPVEWGSLGQWAGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQG
                     LVKGDTVQKVAHTLGYDSTTAFITMFKKGLGQTPGRYIAGLTTVSPQSAKPDPRQ"
     gene            2196..3392
                     /gene="nimT"
                     /locus_tag="JN078_003945"
     CDS             2196..3392
                     /gene="nimT"
                     /locus_tag="JN078_003945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005117270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-nitroimidazole transporter"
                     /protein_id="HAY9042961.1"
                     /translation="MTCSTSLSGKNRIVLIAGILMIATTLRVTFTGAAPLLDTIRSAY
                     SLTTAQTGLLTTLPLLAFALISPLAAPVARRFGMERSLFAALLLICAGIAIRSLPSPY
                     LLFGGTAVIGGGIALGNVLLPGLIKRDFPHSVARLTGAYSLTMGAAAALGSAMVVPLA
                     LNGFGWQGALLMLMCFPLLALFLWLPQWRSQQHANLSTSRALHTRGIWRSPLAWQVTL
                     FLGSNSLVYYVIIGWLPAILISHGYSEAQAGSLHGLLQLATAAPGLLIPLFLHHVKDQ
                     RGIAAFVALMCAVGAVGLCFMPAHAITWTLLFGFGSGATMILGLTFIGLRASSAHQAA
                     ALSGMAQSVGYLLAACGPPLMGKIHDANGNWSVPLMGVAILSLLMAIFGLCAGRDKEI
                     RSYPVL"
     gene            3432..3779
                     /locus_tag="JN078_003946"
     CDS             3432..3779
                     /locus_tag="JN078_003946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310528.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 domain-containing protein"
                     /protein_id="HAY9042962.1"
                     /translation="MNIQCKRVYDPAEQSDGYRVLVDRLWPRGIKKTDLALDEWDKEI
                     TPSTELRKAFHGEVVDFTTFREQYLAELAQHEQEGKRLADIAKKQPLTLLYAAKNTTQ
                     NHALVLADWLRSL"
     gene            complement(3801..4055)
                     /gene="yoaF"
                     /locus_tag="JN078_003947"
     CDS             complement(3801..4055)
                     /gene="yoaF"
                     /locus_tag="JN078_003947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF333 domain-containing lipoprotein YoaF"
                     /protein_id="HAY9042963.1"
                     /translation="MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQK
                     GGTLIPVSTAQGVSNNCKLPGGETIDEWALWRRDHPAGEK"
BASE COUNT          965 a         1061 c         1039 g         1124 t
ORIGIN      
        1 catgatgcgt ataaagcttc cgatgagcgt ttatatgtca ataagcagaa caaaaacagc
       61 cgttcatgat aaccttctgt ggttgtttgc ttgtaatctc aggagcgtga aatgactgaa
      121 atggctaaag gaagcgtgac gcatcagcgg ttaatcgctt tattatcaca agaaggtgct
      181 aacttccgcg tcgttaccca tgaagcggta ggtaaatgtg aagcggtgtc agaaattcgt
      241 ggcaccgctt taggccaggg agctaaggca ctggtatgta aagtcaaagg caatggcgta
      301 aatcaacatg ttctggcgat cctcgctgcc gatcaacagg ccgatctgag ccaacttgcc
      361 agccatatag gcggattacg cgcttcgtta gccagccctg ctgaagtcga tgaactcaca
      421 ggctgtgtct tcggcgcgat cccccctttc agcttccatc caaaactcaa actggttgcc
      481 gaccctctac tcttcgaacg atttgatgaa atcgccttca atgcagggat gctggataaa
      541 tccgttattt tgaaaaccac ggattatttg cgcattgcgc aaccagaact ggtcaatttc
      601 cgccgcactg cgtaactagc ctgtccgttc aataagcaga acggacaaaa ccagcacaac
      661 agcaatggca aaaaacgatg acgtgataat cagtgtctcg acgaacattt gatcgttcat
      721 agcatgcccc cgggagatag ctgttttcac gttattgtta gcgtgcacaa atggcagttt
      781 gatgacagtt cgcctgattt ttatgcaaaa aacgtaaaga ttttctactt ccttcctgca
      841 gcaagcgtaa agtaagcagg cttattattt tttggcaagg aaaccacgat gtttgatgtc
      901 actttgctga tcctgctcgg gttagctgcg ctgggcttta tcagtcataa caccactgtc
      961 gccgtttcaa ttctggtgtt tcacaccgtt aagcaccttt ttcccgtgga ttgaaaaaca
     1021 ggggctaagt atcgggataa tcattctgac gattggcgtt atggccccca tcgccagcgg
     1081 gacgctaccg ccctcaacct tgattcactc gtttctgaac tggaaatcgc tggtggcaat
     1141 tgcagtaggc gtgattgtct cctggctggg tgggcgcggc gtgaccttaa tgggcagcca
     1201 gccgcaactg gtcgccgggc tgctggtagg cactgtttta ggcgtggcgc tgtttcgcgg
     1261 cgtaccggtc ggcccgctta ttgccgcggg tctggtttcg ctgattgtgg ggaaacagta
     1321 gttaatcccg caatatatcg gcctggcgtt tgccccaggc ctttcttaaa catagtaata
     1381 aaggccgttg ttgaatcata ccccagcgta tgagcaactt tctgtacagt atcgcctttc
     1441 actaatccct gaagtgccat aatcagctgt aactgctgac gccactggcg aaaactcaac
     1501 cccgtctctt ttacgatcag tcgcgcaaga ttgcgttcac tcatcgcaaa aaagccagcc
     1561 cattgcccta atgaccccca ctcgacgggc cctttcgcca tcatctccac catcgtgcgg
     1621 attttaggat gagaagaaac gggcaggtgc agctgttgtt gtggctgctg agggagttca
     1681 tcaaacagga cctgtattaa tctgcgggtc atcggctcag cacgctgagt cgtcgtcctg
     1741 tttgccaggg ttaaaatcaa ttcccggcat aagggcgata ttttcaatgt gcaacatgtt
     1801 gtcggcattg tcactgcgct gggttcgata aacagaaaac agagttcagc gttagctgtc
     1861 acttgattgc tatgttccac cccgcccggt atccaaaccg catattgcgg cggcaccatc
     1921 cacaaagcat tttccaccgt acaggtaatt gcaccatgta atgctagtat cagctgtcct
     1981 ttgcggtgct gatgtacagg actggttaac tcatccgttc cggcgtgaat acaaaatgcg
     2041 accgcggctt catggtgtcg gtcgggttca tagccattga gattcaacct gtgcatcatt
     2101 ttgtccgaat ttagcgataa tttgtcattt tagcttgatt caacataaca ataaaaacgg
     2161 taaggtacag cctcgtttgt aacaatgaga agcatatgac ctgttcaact tcattaagcg
     2221 gcaaaaacag gattgtcctt atcgctggca ttctgatgat tgccacaaca ttacgcgtca
     2281 cctttaccgg cgcagcaccg ttactggata cgattcgttc cgcttactcg ctgacgacag
     2341 cgcaaaccgg cttattgacc accctgccat tattggcctt tgcgctaatc tcacctttgg
     2401 ccgccccggt agcgcgacgt tttggtatgg aacgtagcct gtttgccgcg ttacttttga
     2461 tctgtgctgg tatcgcaatt cgctctctcc cttcgcctta cttattattt ggcggtacag
     2521 cggtcattgg cggtgggatt gcattaggca atgtcttact gccaggatta attaaacgcg
     2581 atttccctca ttccgtcgcc agacttaccg gcgcatattc cctgacaatg ggagctgcgg
     2641 cggcacttgg atcggctatg gtagtgccgc tggctttgaa cggttttggc tggcaaggcg
     2701 cgttgctcat gctgatgtgt tttcctctgc tggctctttt tttatggctg ccacagtggc
     2761 gaagccaaca acatgcaaat ttgagtacct cgcgcgcctt acatactcgg ggtatctggc
     2821 gttcgccgct tgcctggcag gtcacattgt ttcttgggag caactcactg gtctattacg
     2881 tgattattgg ctggcttccg gcgatcctca tcagtcacgg ctatagcgaa gcacaggcgg
     2941 gttcactgca tggtttgctg caactagcca cagcagctcc cggtttgctg atccctcttt
     3001 tcttacatca tgtgaaagac cagcgtggta ttgcagcgtt cgttgccttg atgtgcgcag
     3061 tgggcgctgt tgggctctgc tttatgccag cgcacgcgat cacctggact ctgcttttcg
     3121 gttttggttc cggcgcaaca atgatactgg ggttgacgtt cattggtctt cgggcaagtt
     3181 ctgcgcatca ggcggcggca ctctcgggga tggcacaatc cgtcgggtat ttgctggcag
     3241 cctgtgggcc gccgctaatg ggtaaaatac acgatgctaa cggtaactgg tccgtaccac
     3301 tgatgggtgt tgcaatactt tcactactga tggcgatttt cggactttgc gccgggagag
     3361 acaaagaaat tcgctcatat ccggtgctat agtgacgtga caaatcatgc gtgaaaggga
     3421 gaacaaacac gatgaatatt cagtgcaaac gcgtttatga tccggctgaa cagagcgatg
     3481 gttatcgcgt actggtcgac cgcctctggc cgcgcggtat caaaaaaacc gatttagccc
     3541 ttgatgagtg ggataaagaa atcacgccgt caacggaact gcgcaaagcc tttcacggcg
     3601 aagtcgtcga ttttacaacc tttcgcgagc aatatcttgc agaactggcg caacacgagc
     3661 aagaaggaaa gcggctggcg gacatcgcca aaaaacagcc gctgaccctg ctctacgcag
     3721 caaaaaacac cacgcagaac catgcgctgg tgctggccga ctggctacgt agcttgtgat
     3781 tttagtacag catccggcgg ttatttttca ccagccggat ggtcccgtcg ccacaatgcc
     3841 cattcatcaa tcgtttcacc gcccggtaat ttgcaattgt tgctgacccc ttgcgctgtc
     3901 gacactggaa tgagcgtccc gcccttctgc tggcaataga ccgacgccgg atttgccata
     3961 ccaatctgcg gcggtttagg tgcttctggc tgagaagggg ttgaacaacc agccaggacc
     4021 agcaagcaag gcagaacaaa actgataatt ttcatttatt gatctcacat atttatccag
     4081 acttagagta tcgcggtatc gttttgtttt gcagcactat ttttattaca ttcactcaaa
     4141 acatattacg tcttgtttca tctttgttga tgatgtttta tcatgcctg
//
LOCUS       DADMJB010000236         4183 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.239, whole genome shotgun sequence.
ACCESSION   DADMJB010000236 DADMJB010000000
VERSION     DADMJB010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4183)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4183)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4183
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.239"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..209)
                     /locus_tag="JN078_003948"
     CDS             complement(<1..209)
                     /locus_tag="JN078_003948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HAY9042964.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA
                     RAFDQIDNAPEEKARGITINTSHVE"
     gene            complement(324..399)
                     /locus_tag="JN078_003949"
     tRNA            complement(324..399)
                     /locus_tag="JN078_003949"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(364..366),aa:Thr,seq:ggt)
     gene            complement(406..480)
                     /locus_tag="JN078_003950"
     tRNA            complement(406..480)
                     /locus_tag="JN078_003950"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(445..447),aa:Gly,seq:tcc)
     gene            complement(597..681)
                     /locus_tag="JN078_003951"
     tRNA            complement(597..681)
                     /locus_tag="JN078_003951"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(645..647),aa:Tyr,seq:gta)
     gene            complement(690..765)
                     /locus_tag="JN078_003952"
     tRNA            complement(690..765)
                     /locus_tag="JN078_003952"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(730..732),aa:Thr,seq:tgt)
     gene            1127..2077
                     /gene="coaA"
                     /locus_tag="JN078_003953"
                     /gene_synonym="panK"
     CDS             1127..2077
                     /gene="coaA"
                     /locus_tag="JN078_003953"
                     /gene_synonym="panK"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HAY9042965.1"
                     /translation="MSIKEQTLMTPYLQFDRNQWAAQRDSVPMTLSEDEIARLKGINE
                     DLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKS
                     TTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFV
                     SDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVF
                     VSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMT
                     LWKEINWLNLKQNILPTRERASLILTKSANHAVEEVRLRK"
     gene            complement(2106..3071)
                     /gene="birA"
                     /locus_tag="JN078_003954"
     CDS             complement(2106..3071)
                     /gene="birA"
                     /locus_tag="JN078_003954"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional biotin--[acetyl-CoA-carboxylase]
                     ligase/biotin operon repressor BirA"
                     /protein_id="HAY9042966.1"
                     /translation="MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLR
                     DWGVDVFTVPGKGYSLPEPIQLLNAEQILGQLDGGSVAVLPVIDSTNQYLLDRIGELK
                     SGDACVAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEV
                     LRKLGADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESV
                     VNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPV
                     KLIIGDKEIFGISRGIDKQGALLLEQDGIIKPWMGGEISLRSAEK"
     gene            complement(3068..4096)
                     /gene="murB"
                     /locus_tag="JN078_003955"
     CDS             complement(3068..4096)
                     /gene="murB"
                     /locus_tag="JN078_003955"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HAY9042967.1"
                     /translation="MNHSLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVL
                     ILGEGSNVLFLEDYRGTVIINRIKGIEIHDEPDAWYLHVGAGENWHRLVKYTLQEGMP
                     GLENLALIPGCVGSSPIQNIGAYGVELQRVCAYVDCVELATGKQVRLTAKECRFGYRD
                     SIFKHEYQDRFAIVAVGLRLLKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTKL
                     PDPKVNGNAGSFFKNPVVSAETAKALLAQFPTAPNYPQAGGSVKLAAGWLIDQCQLKG
                     MQMGGAAVHRQQALVLINEDNAKSEDVVQLAHHVRQKVGEKFNVWLEPEVRFIGASGE
                     VSAVETIS"
BASE COUNT         1078 a         1041 c          933 g         1131 t
ORIGIN      
        1 tattcaacgt gagaagtgtt gatggtgata ccacgagctt tttcttccgg cgcgttatcg
       61 atctggtcga atgcgcgagc agcaccgccg taggttttag ccagtacggt agtgattgca
      121 gcggtcagcg ttgttttacc atggtcaacg tggccgatag taccgacgtt aacgtgcggt
      181 tttgtacgtt caaacttttc tttagacatc gattgtccct ctaagacacg gataaatcgg
      241 tgatatcacc acatcaacca ggcaacatgc ccgacttgtt gaatgcaata aacagaagga
      301 aaaaacaggg aggagaaaag aagtggtgct gataggcaga ttcgaactgc cgacctcacc
      361 cttaccaagg gtgcgctcta ccaactgagc tatatcagca catcttggag cgggcagcgg
      421 gaatcgaacc cgcatcatca gcttggaagg ctgaggtaat agccattata cgatgcccgc
      481 atcctggaac tcggctacct gattttcatt ctgcactgaa tatcgagaga agctctcttt
      541 attcgagccg gtaagcgaac ttatcgtctc gggctacgcc atcgcgtggc cgaaattggt
      601 ggtgggggaa ggattcgaac cttcgaagtc tgtgacggca gatttacagt ctgctccctt
      661 tggccgctcg ggaaccccac cggacttgat ggtgccgact accggaatcg aactggtgac
      721 ctactgatta caagtcagtt gctctaccta ctgagctaag tcggcatcaa gtagcgcgca
      781 ttctatggag acatgcgagt tcatgcaact aaaaaattgc ataatttgtt ttattggtca
      841 cattttatgc gacacgatga agaaacagcc gaatggaggg cagattagca cactttttca
      901 acatcattgt gctcaacaat gcgctcctgc taaaccataa ttcttcttat cagatggaat
      961 atctgtcaca ttgcttttca acgatagctt cctaggagag attttttctt attattcctc
     1021 cccatctggt gttaccctcc tgcccattaa cccattcaac agaactgtga cgcgccatgg
     1081 caaatatcgc tttgccgata gagctatgac cgccagaaac atgcttatga gtataaaaga
     1141 gcaaacgtta atgacgcctt acctacagtt tgaccgcaac cagtgggcag ctcagcgtga
     1201 ttccgtacct atgacgttat cggaagatga gatcgcccgt ctcaaaggta ttaatgaaga
     1261 tctctcgtta gaagaagttg ccgagatcta tttacctctg tcacgtttgc tgaacttcta
     1321 tataagctcg aatctgcgcc gtcaggcagt tctggaacag tttcttggta ccaacgggca
     1381 acgcattcct tacattatca gtattgctgg tagtgtcgcg gtggggaaaa gtacaaccgc
     1441 ccgtgtattg caggcgctat taagccgttg gccggaacat cgtcgtgttg aactgatcac
     1501 tacagatggc ttccttcacc ctaatcaggt tctgaaagaa cgtggtctga tgaagaagaa
     1561 aggcttcccg gaatcgtatg atatgcatcg cctggtgaag tttgtttccg atctcaagtc
     1621 cggcgtgcca aacgttacag cccctgttta ctcgcatctt atttatgatg tgatcccgga
     1681 tggagataaa actgttgttc agcctgatat tttaattctt gaagggttaa atgtcttaca
     1741 gagcggaatg gattatccac acgatccaca tcatgtattt gtttctgatt ttgtcgattt
     1801 ttcgatatat gttgatgcac cggaagactt acttcagacg tggtatatca accgtttcct
     1861 gaaattccgc gaaggggctt ttaccgaccc ggattcctat tttcataact acgcgaaatt
     1921 aactaaagaa gaagcgatta agactgccat gacattgtgg aaagagatca actggctgaa
     1981 cttaaagcaa aatattctac ctactcgtga gcgcgccagt ttaatcctga cgaaaagtgc
     2041 taatcatgcg gtagaagagg tcagactacg caaataattt gcaggggagc gaatactccc
     2101 ctttcttatt tttctgcact acgcagggat atttcaccgc ccatccaggg ttttattatt
     2161 ccatcctgct caagtaataa agccccctgt ttgtctattc cgcgtgaaat gccaaatatt
     2221 tctttatcac caatgataag tttcactggg cgattaataa aattatccag cttttcccag
     2281 cgcgacagat aaggtgccaa tccttcttgt tcgaagagtt ccaacgcagc acgtaattca
     2341 cgtattagca tggccgccaa cgtattacga tcgagattga tccccgcttc ctgcagcgtg
     2401 atccacccct gattaacgac actctcttca acacggcgca ttgccatgtt gatcccggct
     2461 ccaatgacta tttgcgccgc atcgccagtt ttgccagtca gctccacaag aatgcctgcc
     2521 agcttgcgat cctgcagata gaggtcatta ggccatttga cacgaacttt atctgctccc
     2581 agcttgcgta atacttccgc catcacgata ccgataacca gacttaaacc aatcgccgcc
     2641 gccgggcctt gttccagacg ccagaacatc gacaaatata agtttgcgcc aaaaggcgaa
     2701 aaccatttcc gcccccggcg accacggcca gcctgctggt attctgcaac acaggcatcg
     2761 cccgatttaa gctctccgat acgatcaaga aggtactgat tcgtggagtc aataactggc
     2821 agcacggcta cactaccgcc atccagctga cccaatatct gttcagcatt aagtaactgg
     2881 atgggctcag gcaggctgta tcctttaccc ggaacggtaa agacatcaac gccccagtca
     2941 cgcagtgtct gaatgtgttt attaatagcc gcccggctca ttcccagcgt ttcacccaac
     3001 tgctcgccag agtgaaattc accgttcgct aacagggcaa tcaatttcag tggcacggtg
     3061 ttatccttca tgaaattgtc tccactgcgc tcacttcacc tgatgcacca ataaagcgga
     3121 cttcaggctc aagccagaca ttaaattttt cacccacttt ttgtcttaca tggtgtgcca
     3181 gttgcaccac atcttcgctt tttgcattgt cttcattaat gagaactaac gcctgttgac
     3241 ggtgcaccgc agccccaccc atttgcatcc cttttagctg gcactgatca ataagccaac
     3301 ctgctgccag ttttactgaa ccacccgcct gggggtaatt tggtgctgtt ggaaattgcg
     3361 ccagtaatgc tttagccgtt tcggcagata caacagggtt tttgaagaaa ctaccggcat
     3421 tgccattcac ttttggatca gggagtttgg tggtgcgcat atgacacacc gcattaaata
     3481 cttgctgtgg cgttactgtt gtaggatcca gacgagttaa gtcaccatac gttagtacag
     3541 gttgccactc ttttagcaga cgcagaccta cggctacaat ggcgaagcga tcctggtatt
     3601 catgtttaaa aatactgtcg cgatagccaa aacggcactc tttggcagtt aagcgcactt
     3661 gcttgcctgt cgccagttca acacaatcaa cataagcgca aactcgctgt aattctacgc
     3721 cataagcacc aatattctgg ataggtgatg agccgacaca accaggaatt aatgccagat
     3781 tttccagacc aggcatacct tcctgcaaag tgtattttac caggcgatgc cagttttctc
     3841 cggctcctac atgtaaatac cacgcatcag gttcatcatg aatttcgata cctttgatcc
     3901 ggttgatgat caccgtgccg cgatagtctt ccagaaaaag tacattactt ccttcaccca
     3961 gaataagaac gggttgtcct tctgcggttg catactgcca ggcattgagt aattgttgtt
     4021 cgtcttcggc acatacaatg tgctgagcat tatgatcaat gccaaatgtg ttccagggtt
     4081 ttaaggagtg gttcatagct gctttcctga tgcaaaaacg aggctagttt accgtatctg
     4141 tggggggatg gcttgtagtt atgacgacag ggagagtttg tag
//
LOCUS       DADMJB010000237         4126 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.240, whole genome shotgun sequence.
ACCESSION   DADMJB010000237 DADMJB010000000
VERSION     DADMJB010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4126)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4126)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4126
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.240"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(36..593)
                     /gene="ymfL"
                     /locus_tag="JN078_003956"
     CDS             complement(36..593)
                     /gene="ymfL"
                     /locus_tag="JN078_003956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415665.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YmfL"
                     /protein_id="HAY9042968.1"
                     /translation="MGKHHWKIEKQPEWYVKAVRKTIAKLPGGYAEAADWLDVTENAL
                     FNRLRADGDQIFPLGWAMVLQRAGGTHFIADAVAQSANGVFVSLPDIEDVDNADINQR
                     LLEVIEQIGSYSKQIRSAIEDGVVEPHEKTAINDELYLSISKLQEHAALVYKIFCISE
                     SNDARECAAPGVVASIASGCGETNA"
     gene            complement(637..837)
                     /locus_tag="JN078_003957"
     CDS             complement(637..837)
                     /locus_tag="JN078_003957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415664.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAY9042969.1"
                     /translation="MKAYWDSLTKEQQGELAGKVGSTQGYLRLVFNGYKKASFVLAKK
                     LEQCTSGAITKSDLRPDIYPKD"
     gene            928..1602
                     /locus_tag="JN078_003958"
     CDS             928..1602
                     /locus_tag="JN078_003958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HAY9042970.1"
                     /translation="MKTIHDIRRSNARKLRDGVGGNSSFATMIDREPTQTSRFMGDGA
                     TKNIGDSMARHIEKCFDLPIGWLDQEHQTTNITKKPEVSITNKQITLVPVISWVQAGA
                     WKEVGYSEVDLSTAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHG
                     DDVIALMHDTGETTFKRLIEDGTQRYLKALHPNWPEPYIKINGNCSIIGTVIFSGKPR
                     RYKIKA"
     gene            3131..3667
                     /locus_tag="JN078_003959"
     CDS             3131..3667
                     /locus_tag="JN078_003959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416862.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HAY9042971.1"
                     /translation="MSFIQTLTGKKFNYINSTIDDIYIEDIAGALSNICRFAGHLPDF
                     YSVAQHSVLCSQLVAPEFAFEALMHDATEAYCQDIPAQLKRLLPDYKRMEEKIDAVIR
                     EKYGLPPVMSTPVKYADLIMLATERRDLGLDDGSFWPLLEGIPATEMFKVIPLSPGHA
                     YGMFMERFNELSELRKCA"
     gene            3658..4020
                     /locus_tag="JN078_003960"
     CDS             3658..4020
                     /locus_tag="JN078_003960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HAY9042972.1"
                     /translation="MRMNVFEMEGFLRGKCVPRDLKVNETDAEYLVRKFDALEAKCAA
                     LENKVIPVSTELPPANESVLLFDANGEGWLIGWRSLWYTWGQKETGDWQWTFQVGDLE
                     NVNITHWAVMPKAPEAGA"
BASE COUNT         1256 a          898 c          877 g         1095 t
ORIGIN      
        1 cagttgcgag cgacggtagt gtgttgttaa actgttcatg cgttagtttc tccacaacca
       61 gaagcaatcg acgccacgac gcccggagct gcacactcgc gggcgtcatt actttctgaa
      121 atgcaaaaaa ttttgtagac aagtgctgca tgctcctgca gcttcgaaat tgagagatac
      181 agctcgtcgt taattgctgt cttctcatgc ggttccacta caccgtcttc gattgctgaa
      241 cgaatctgtt ttgaataact gccgatctgt tcaatgactt ccagcagacg ctggttaata
      301 tcggcgttgt ccacatcctc gatgtcagga agagacacaa agacgccatt tgcagactgc
      361 gccacagcat cagcaatgaa gtgagtgcca ccagcacgct gtaaaaccat tgcccatccc
      421 agcgggaaaa tctgatcgcc atctgcacga aggcggttga ataaagcgtt ttctgttaca
      481 tcgagccagt cagccgcttc agcgtaacca cccggcaact ttgcgatagt ttttctgaca
      541 gctttcacgt accactcagg ctgtttttct attttccagt gatgcttacc cacgattagc
      601 ctcatcgttc tgtggttaaa aattgaaagt gttctgctaa tctttcggat agatatccgg
      661 tcttaagtca gatttcgtaa ttgcacctga cgtgcattgc tcaagttttt tagccagcac
      721 aaaactggct tttttatagc cattaaaaac cagccgtaag tagccttgtg ttgagccaac
      781 ttttccggcc aactcaccct gctgttcttt ggttaaagag tcccaatacg ctttcataca
      841 atatgtacct ccagtgtaca catcacatga ttgaaatgaa ccttcaagat acttgtacct
      901 tagcggtaca agggttttaa tttcgttatg aaaacaatcc atgacatccg gcggtctaac
      961 gccagaaaac tgagagatgg tgttggcggg aattcttcct ttgccactat gattgatcgc
     1021 gagccaaccc agaccagcag gtttatggga gatggtgcta ctaaaaatat cggtgacagc
     1081 atggcacgac acattgaaaa atgtttcgac ctgcctatcg gatggctcga tcaagaacac
     1141 cagacaacga acatcacaaa aaaacctgaa gtttcaatca ctaacaaaca aataacgtta
     1201 gtccctgtca tatcatgggt acaggccgga gcatggaaag aagttggcta ttctgaggtt
     1261 gatttgagca cagcagaaac ttatccctgc cctgtaccct gtggcgaaat gacttatatc
     1321 ttgcgggtga ttggtgattc aatgattgat gagtaccgtc cgggagacat gatttttgtt
     1381 gatcctgaag tccctgcttg ccacggtgac gacgttattg cgttgatgca cgatacaggc
     1441 gaaaccacct tcaagcgatt gatagaagat ggaacacagc gttatctcaa agcattacac
     1501 ccaaactggc ctgagcccta cattaagatt aacggtaatt gctctataat tggcactgtg
     1561 attttctcgg gaaaaccaag aagatacaaa ataaaggcct aatcaatatt tatgaacctg
     1621 cttcggcagg tttttttata cttgacaatg taccccatgg acacacaatg taccccatgg
     1681 acacacaatg taccaaaacg aaacaacaaa caggcaggat gcccacgaag tagccgcctg
     1741 gggcatatga agtccaagat gattcgttag caacaaaacg cccataggac gcttcgctct
     1801 ttaacaattt gaatattttc agcgtcaatg atctgtttag ctccctacaa gtaaatgtag
     1861 cgtagcacca tgataaatcc tgctagtgtt tagttaaaaa tcgcgcgaga gcaagaacga
     1921 cgtgagggca ggcaatactg atagtgttat tgctattagt ttatcaaaaa tatttagacg
     1981 acccagatga atatttttaa tacatactcc ccctaattta acaggagtaa atgttgatga
     2041 ataacgagac atctatactc aacaattgta tgatatgaac aattatataa cataatgtag
     2101 gaaaaataaa aatggattgg catgacctta tatcaaaggt aattatcgga cttgttacag
     2161 gctcaatcgc agcttactta actgcgcgat atgcactcgg ccgttattat aaagaaaaat
     2221 ggtgggacaa aagaatagat ttgtatacgt aattagttga ctgtgtttat cttctaaaaa
     2281 acacagctga ctattggtat aaacatgagt tacatcacgc ttcacaattc ccaacctact
     2341 ttagttacaa atcaaaagaa gaaaatgaaa tccttagcaa atctttctct aatgagcttg
     2401 aaaaactcag tagaataggt gagctatctt cattattctt aacagaagag tgtggggata
     2461 aaatccgttc attcattgaa aatgaagaaa atctatttat acaatgggtg tttgatagta
     2521 tagagttgat agatgcccac aagtcaagac ttgataaatt aaaagtatta ctagacgata
     2581 ttatctctga agcaaagaga gagcttaagg tcaataaaaa acataacagc ctaaagaata
     2641 taaagtggtc cataactatg ccggaccaaa aaaatgatga gccaattaat tatcacgaca
     2701 atcattaaaa cactttagaa cccgctgggc gggttctatt caaatatact ttgcacatca
     2761 caaataaaac tataacgtcc ttcttctttt cctaatatct tatatctact tatttataag
     2821 cggcttacag atcttcaaca gataaaccta atgaaggcga caatgttctg atgaatagcc
     2881 acctttttac tcaactgaaa gcgcgttctg tcccttgtca ttaagtgcca gttcgttaag
     2941 tccaaaacct ccggaacgcg ctttcaattg agtggggaaa ataactggcg atggcagccg
     3001 cccgttgcac taagtgcctc tggatggggc atttactgaa acgaaaccaa aacttttaat
     3061 cgccttatgg cgagggattc gtgcaaccaa aaatcgtgcg gtgcagcgca ccaattaagg
     3121 agaactaacg atgagtttta tccagactct taccggtaag aagttcaatt atatcaactc
     3181 caccattgac gatatttata tcgaggatat cgccggtgcg ctttcaaata tctgccgctt
     3241 cgcgggacac ttgccggatt tttacagcgt ggcgcagcat tccgttctgt gcagtcaact
     3301 tgtggcgcca gagttcgcct ttgaagcgtt aatgcatgat gcaacagaag cgtattgtca
     3361 ggacatcccc gcgcaactga aacgccttct tcctgactat aaacggatgg aagaaaaaat
     3421 agacgccgta atccgtgaga aatacgggtt acccccggtt atgagcacgc ccgtgaaata
     3481 tgccgatctc atcatgctgg caaccgaacg ccgcgatctt gggcttgatg atggctcttt
     3541 ctggcctcta ctagaaggta tcccagcaac agagatgttc aaagttattc cactgtcgcc
     3601 aggccatgcc tacgggatgt ttatggaacg ttttaacgaa ttatcggagt tacgcaaatg
     3661 cgcatgaatg ttttcgaaat ggaagggttt cttcgcggga aatgtgtacc gcgagatctg
     3721 aaagtgaatg aaacggatgc tgaatacctg gtgcgtaaat tcgatgcgct tgaagctaaa
     3781 tgtgcggcac tggaaaacaa agtaatacca gtgtcaactg aactgccacc agcaaatgaa
     3841 agtgttttgt tattcgatgc taacggagaa ggctggctaa ttggctggcg ttctctctgg
     3901 tacacctggg gacaaaaaga aaccggagac tggcagtgga catttcaggt cggggacctt
     3961 gaaaacgtca atatcactca ctgggcagta atgccaaaag caccggaggc tggagcataa
     4021 tgaccacttt taccgacaaa gaactgatta aagaaattaa agagcgtatc agcagccttg
     4081 acgtgcgaga cgatattgag cgccgtgctt atgaaatcgc actcct
//
LOCUS       DADMJB010000238         4110 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.241, whole genome shotgun sequence.
ACCESSION   DADMJB010000238 DADMJB010000000
VERSION     DADMJB010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4110)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4110)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4110
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.241"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(464..931)
                     /locus_tag="JN078_003961"
     CDS             complement(464..931)
                     /locus_tag="JN078_003961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014526575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042973.1"
                     /translation="MRIDISHQTRHTPPNMLPREQNCVAMALSACFRQQLNPVVNSLL
                     KERIIHSPKELEHDNAVIRALQKLQIQEVCNSTLWETAKQQLLQKSDGRYFAINSKHL
                     AFPGPGESHAFCCIKYKNAIGINGNNAETQSTHYQPYPYDKVSIWGPFPHNLT"
     gene            complement(2000..2191)
                     /locus_tag="JN078_003962"
     CDS             complement(2000..2191)
                     /locus_tag="JN078_003962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="HAY9042974.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDH
                     ADELYRSCLARFGDDGENL"
     gene            2256..2579
                     /locus_tag="JN078_003963"
     CDS             2256..2579
                     /locus_tag="JN078_003963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="HAY9042975.1"
                     /translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRVFLGEPVARSGRLPT
                     LAPPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQG
                     TRDDS"
     gene            2521..3279
                     /locus_tag="JN078_003964"
                     /pseudo
     CDS             2521..3279
                     /locus_tag="JN078_003964"
                     /inference="COORDINATES: protein motif:HMM:NF015397.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            3257..3787
                     /locus_tag="JN078_003965"
     CDS             3257..3787
                     /locus_tag="JN078_003965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="HAY9042976.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTEKMLNDEFRKLEESVSKAVTSN
                     ETKIKDAIALFTASTEESLKKHREGVKEAMMQHRKDVLKLAGNTGMMLLGMVIFLFTV
                     SGGTLWYLGGMIQANLEEIRKQNESLEKLNAKTWGVRYHEGSNGRFLVLPEGMKAETN
                     WTMENGKQNAVRLVQE"
     gene            3794..4027
                     /gene="mbeD"
                     /locus_tag="JN078_003966"
     CDS             3794..4027
                     /gene="mbeD"
                     /locus_tag="JN078_003966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="HAY9042977.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWESAFVELQKMFSLTQRDN
                     AMLNEQVMQLSQQVQHLSERTERLSQLYSENRR"
BASE COUNT          983 a          932 c         1225 g          970 t
ORIGIN      
        1 tggtccttca ctgggatggt aatcagagac aggctaaaat gttgtcagcg cgtttccggt
       61 gcattttttg ggataatggt tggttcgggg ggggcaccgg gaacgcgctt cagtcagacc
      121 ttgctgaaaa cacaggaacg cgttaaaacg catacgggcg cgattctggt gtgtcttttg
      181 ttgctgtgtt ttgcctctat tgccagatcg cgctcattcc cctgaacttc tgttttcccg
      241 ctcaggtccc cgtcttcttc gcttccgaaa gcatgaaaaa aatccgtttc agctgtctct
      301 ggctggcaat tcctgcgtga ttcacatggc tgcatagcta tgcatgtggt taaaatttac
      361 cgggtgcgat cgcggcagtt tttcgggtgg tttgttgcca tttttacctg tctgctgccg
      421 tgatcgcgcc gaacgcgttt cagcggtgcg tacaattaag atattacgtt aaattgtgag
      481 ggaatggtcc ccatatactg actttatcat agggataggg ttggtagtgg gtcgattggg
      541 tttcggcatt gtttccgtta atgccaattg catttttgta tttgatgcaa cagaaggcgt
      601 gagattctcc tgggcctgga aaggctaagt gtttagaatt gatggcaaaa tatcttccgt
      661 ccgatttttg aagtagttgt tgtttggctg tctcccaaag ggtgctgtta caaacttctt
      721 gaatttgtag tttttgcagg gctcttatta ctgcgttgtc atgttccaat tctttagggg
      781 agtgtattat tctctctttt aataagctgt ttaccacagg gtttagttgt tgtctaaagc
      841 acgcagataa tgccattgct acacaatttt gttcccgagg aagcatgttt ggcggggtat
      901 gccgtgtttg atgtgatatg tctattctca tagaaggtct ctggcttata gcatcaacaa
      961 atacggctat aaaacaaaat tttcatagag tgattcaaga tcttcttgag atcctttttt
     1021 gcggcgcgta atctgctgcc tgcaaacaaa aaaaccaccg ctaccaacgg tggtttgttt
     1081 gccggaatct agagctacca actctttctt ccgaaggtaa ctggcttggt ggagcacaga
     1141 taccaaatgc tgtccttcta gtgtagccgc agttaggcca ccacttcaag aactcttaat
     1201 atctcaatcc accttgtaca gttaccaatg gctgctgcca gtggcgttaa gtcgtgtctt
     1261 accgggttgg actcaagacg atagttaccg gatgaggcgc agcggtcggg ctgaacgggg
     1321 ggttcgtgca cacagcccag cttggagcga acgacctaca ccgaactgag atacctacag
     1381 cgtgagctat gagaaagcgc cacgcttccc gaagggagaa aggcggacag gtatccggta
     1441 agcggcaggg tcggaacagg agagcgcacg agggagcttc cagggggaaa cgcctggtat
     1501 ctttatagtc ctgtcgggtt tcgccacctc tgactagagc gtcgattttt gtgatgctcg
     1561 tcaggggggc ggagcctatg gaaaaacgcc atcggcgcgg ccttcttcct gttcctggtc
     1621 ttttgctcac atgttctttc cggcgttatc ccctgattct gtggataaca gcatttcgtt
     1681 tttgagtgag tagataccgc tcgccgcagt cgaacgaccg agcgtagcga gtcagtgagc
     1741 gaggaagcgg aaaagcgcct ggacgtgcat tttctcctta cgcatctgtg cggcatttca
     1801 cacccggtat ggcgcacttt tcatacaatc cgcactgatg ccgcatggtg aagccagtat
     1861 acactccgct atcgctacgt gactgggtca tggctgcgcc ccgacacccg ctaaaacccg
     1921 ctgacgcgcc ctgacgggct tgtctgctcc cggcatccgc tcacagataa gctgtgaccg
     1981 tctccgggag ctgcatgcgt cagaggtttt caccgtcatc cccgaagcga gcgaggcaac
     2041 tgcggtaaag ctcatcggcg tggtcgtgaa gcgattcaca gatgtctgcc tgttcatccg
     2101 cgtccagttc gttgagcttc tccagcagcg ttaatgtctg gcttctgata aagcgggcca
     2161 tgttaagggc ggttttttcc tgtttagtca ctgatgcctc cgtgtaaggg ggatttctgt
     2221 tcatgggggt aatgataccg atgaaacgcg agaggatgct cacgatacgg gttactgatg
     2281 atgaacatgc tcgtttgctg gaacgttgtg agggtaaaca actggcggta tggatgcggc
     2341 gggtcttcct gggggagccg gttgcccgtt ccgggaggct gccgacactg gcaccgccgt
     2401 tactgcgtca gctggccgcc atcgggaata acctgaatca gacagcgagg aaggtgaaca
     2461 gcgggcagtg gtcttccggt gaccgggttc aggtggtggc cgcactgatg gccatcgggg
     2521 atgagctgcg ccggctgcgt ctggccgtca gggaacaggg gacgcgggat gatagttaag
     2581 tttcatgcca ggggaaaagg tggtggcagt ggtccggttg attacctgct gggaagggag
     2641 cgtaaccggg aaggggcaac ggtgcttcag ggtaatccgg aagaagtccg ggaactcatc
     2701 gatgccacgc catttgcgaa gaaatacacg tccggtgttc tctcgttcgc ggagaaggcg
     2761 ctgccagcgg gaggacgtga aaaagtgatg gcgagttttg agcgtgtact gatgcccggt
     2821 ctcgaaaaaa atcagtacag catcctgtgg gtggagcacc aggacaaggg acggcttgag
     2881 ctgaattttg tcattccgaa catggagcta cagaccggaa aacgcctcca gccgtactac
     2941 gaccgggcag acaggtcgag aattgatgcc tggcagacgc tggtgaatca ccattacggg
     3001 ctgcatgacc cgaatgcccc ggagaaccgc cggacgctga ctctccctga taacctgccg
     3061 gaaacgaaac aggcgcttgc tgagagcatt acacggggga tagacgctct ttatcatgtc
     3121 ggggagataa aagaccgtca ggatgtgatt caggcgctca cagaggcggg gcttgaagtg
     3181 gtcagggtga cgcgaagcag tatcagcatt gcagacccga acggcgggaa gaatatcaga
     3241 ctgaaaggag cattctatga gcaatctttt acagacgggc gcggagttcg agaaaaagct
     3301 gaaagagaga gccgaatcta cagagaaaat gctgaacgac gagttcagga agctcgaaga
     3361 atctgtaagc aaggctgtga catcaaacga gacgaaaatc aaagacgcta tagccctgtt
     3421 cacagcttcg acagaggaat cactgaaaaa acaccgggaa ggggtgaaag aggcgatgat
     3481 gcagcacagg aaggacgtgt taaagctggc agggaatacg ggcatgatgt tgctggggat
     3541 ggttattttc ctgtttaccg tgagtggcgg gacgctctgg tatcttggcg ggatgataca
     3601 ggcgaacctg gaagaaatca ggaagcagaa cgagagtctg gagaagctga acgcgaagac
     3661 atggggcgtg cgttatcacg aggggagcaa cggacgtttt ctggtgttgc ccgaggggat
     3721 gaaagccgaa acgaactgga cgatggaaaa cgggaaacag aatgccgtaa ggctggtaca
     3781 ggagtaacag agcatgacgg agctggaaag acatttgctg aacgcattag agcaactgca
     3841 acaggactat atgcagcggc tgaacgaatg ggagagcgcc ttcgtggaat tgcagaaaat
     3901 gttttcgctt acgcaacggg acaacgcgat gctgaacgag caggtcatgc agttgagtca
     3961 gcaggtgcag cacttgagcg agcggacaga acgcttgagc cagttataca gcgagaacag
     4021 gagataaggg acgaacggct gatacaggaa tgcgaacatg agttatccct ggagcgtgag
     4081 cgccagccgg aaatacagga acgcacactg
//
LOCUS       DADMJB010000239         4080 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.242, whole genome shotgun sequence.
ACCESSION   DADMJB010000239 DADMJB010000000
VERSION     DADMJB010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4080)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4080)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4080
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.242"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            32..931
                     /locus_tag="JN078_003967"
     CDS             32..931
                     /locus_tag="JN078_003967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY9042978.1"
                     /translation="MKREEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEE
                     RLGLRLLTRTTRSVVPTEAGEHLLSVLGPMLHDIDSALASLSELQNRPSGTIRITTVE
                     HAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRI
                     GPDIPMAIVGSPDYFSRRSVPTSVSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVR
                     MEGQLLLNTIDLIIDAAIDGHGLAYLPYDQVERAIKEKKLIRVLDKFTPDLPGYHLYY
                     PHRRHAGSAFSLFIDRLKYKGAV"
     gene            1268..2881
                     /locus_tag="JN078_003968"
     CDS             1268..2881
                     /locus_tag="JN078_003968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415845.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY9042979.1"
                     /translation="MKHSVSVTCCALLVSSISLSYAAEVPSGTVLAEKQELVRHIKDE
                     PASLDPAKAVGLPEIQVIRDLFEGLVNQNEKGEIVPGVATQWKSNDNRIWTFTLRDNA
                     KWADGTPVTAQDFVYSWQRLVDPKTLSPFAWFAALAGINNAQAIIDGKATPDQLGVTA
                     VDAHTLKIQLDKPLPWFVNLTANFAFFPVQKANVESGKEWTKPGNLIGNGAYVLKERV
                     VNEKLVVVPNTHYWDNAKTVLQKVTFLPINQESAATKRYLAGDIDITESFPKNMYQKL
                     LKDIPGQVYTPPQLGTYYYAFNTQKGPTADQRVRLALSMTIDRRLMTEKVLGTGEKPA
                     WHFTPDVTAGFTPEPSPFEQMSQEELNAQAKTLLSAAGYGPQKPLKLTLLYNTSENHQ
                     KIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRNTGNFDVIRASWVGDYNEPSTFLTLL
                     TSTHSGNISRFNNPAYDKVLAQASTENTVKARNADYNAAEKILMEQAPIAPIYQYTNG
                     RLIKPWLKGYPINNPEDVAYSRIMYIVKH"
     gene            complement(2932..3963)
                     /gene="ynaI"
                     /locus_tag="JN078_003969"
     CDS             complement(2932..3963)
                     /gene="ynaI"
                     /locus_tag="JN078_003969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low conductance mechanosensitive channel YnaI"
                     /protein_id="HAY9042980.1"
                     /translation="MIAELFTNNALNLVIIFGSCAALILMSFWFRRGNRKRKGFLFHA
                     VQFLIYTIIISAVGSIINYVIENYKLKFITPGVIDFICTSLIAVILTIKLFLLINQFE
                     KQQIKKGRDITSARIMSRIIKITIIVVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAG
                     KDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIEGTVAEIGWRITKITTFDNRPLYVPN
                     SLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVREMLKNHPAIDQRQTLLV
                     YFNQFADSSLNIMVYCFTKTTVWAEWLAAQQDVYLKIIDIVQSHGADFAFPSQTLYMD
                     NITPPEQGR"
BASE COUNT         1145 a          896 c          961 g         1078 t
ORIGIN      
        1 aaatgattaa tagattgcat ggagatactg aatgaagcgt gaagaaatcg ctgatctgat
       61 ggcgtttgtc gtcgttgcag aggagcgtag cttcactcgt gcagcagccc gcctgagcat
      121 ggcgcagtca gctttaagcc agatagtgcg tcgtatagaa gaacgattgg gattgcggct
      181 tctgacgcga accacgcgca gcgttgttcc aactgaagcg ggcgagcatc ttttgtctgt
      241 tcttggccct atgttgcatg acatagattc agccctggca tccctgagcg agctgcagaa
      301 ccgcccatcc gggacaatac gtattactac tgtagaacat gcagcaaaaa cgatattgtt
      361 accagcaatg cgcacattcc tgaaatcgca tcctgaaatt gatattcagc tcaccattga
      421 ttatggtttg accgatgtcg tttctgaacg ttttgatgca ggcgtccgtc tgggtgggga
      481 gatggataaa gatatgatcg ccattcgaat cgggccagat ataccaatgg ctattgttgg
      541 ctcaccggat tatttttctc gccgaagtgt tccaacgtca gtgtcacaat taatagatca
      601 tcaggcaatt aatttgtatc ttcccacatc gggtacagca aatcgctgga gattaatacg
      661 cggtggacgt gaagttcgtg ttcgcatgga aggtcagctt ttactgaata cgatagacct
      721 gatcattgat gctgcaattg atgggcatgg attggcgtat ctaccttatg atcaggttga
      781 gcgggctatt aaagaaaaaa aactgatacg tgttttggat aaattcacac cagatttacc
      841 cggttatcac ctgtactatc cacaccgtcg acatgctggc tcggcattct cattatttat
      901 agataggctg aagtataaag gtgctgttta gcactacttg ctgatacatt aatttaattt
      961 ctctcttaac gtattctcag ttcctttcaa cgttttggtt attttttatt cttcgtacaa
     1021 tggcgacaga tgctgatttt gataccgaaa actggtttga acgtgcgaag cctgaacgta
     1081 gtattcggtg ttctatgtgc tttgccgcat tttggcgtcg attatttaca ctaaatctga
     1141 tttaatatat tgatacataa aacattttat gcttcctgtg tcactttttt gatggaagtt
     1201 gtttgcattt ctttaaggcg aaacaaataa ttacgcatca attttaatgt cggttagagg
     1261 gaaacttatg aagcactctg tttcagtcac gtgttgtgcg ctgttggtca gcagcatttc
     1321 tctttcgtat gctgcagaag ttccgagcgg cacagtactg gcagagaagc aggagctggt
     1381 gcgccacatt aaagatgagc ctgcgtcgct ggatcccgct aaagccgtgg gcctgccaga
     1441 gattcaggtc attcgcgatc tgtttgaagg actggtgaat cagaacgaga aaggggagat
     1501 tgtccccggc gttgcgactc agtggaaaag taatgacaac cgtatctgga cttttaccct
     1561 gcgcgataac gcaaaatggg cggatggcac accggtaacg gcgcaagatt ttgtctacag
     1621 ctggcagcgt ctggtggacc cgaaaacgct atcgccattt gcatggtttg ccgcgctggc
     1681 gggaatcaac aacgcacagg cgattattga tggtaaagct acgcctgacc agcttggcgt
     1741 caccgcagtt gatgcccata ccttgaaaat tcagcttgat aaaccgttgc cgtggtttgt
     1801 gaatttaacc gctaactttg ccttcttccc ggtgcaaaaa gccaacgtag aaagcggtaa
     1861 agagtggacg aaacccggaa atctgatcgg caatggcgct tatgttctta aagaacgcgt
     1921 agtcaatgaa aaactggtcg tggtaccgaa tacccattat tgggataacg ccaaaacggt
     1981 actgcaaaaa gtgaccttcc tgccaattaa tcaggaatcc gcagccacta agcgttacct
     2041 cgcgggggat attgatatca ccgaatcctt cccgaaaaat atgtatcaga agctgttgaa
     2101 ggatattccg gggcaggttt atacgccgcc gcagctcggg acctattatt atgcgtttaa
     2161 cacgcaaaaa gggccgacgg cagatcagcg cgttcgcctg gcattaagta tgacgataga
     2221 tcgccgcctg atgaccgaaa aagtgttggg aacgggcgaa aagccagcgt ggcattttac
     2281 accagatgtt accgccggat ttacgccgga accttcgccg tttgaacaaa tgagtcagga
     2341 agaactgaat gcgcaggcaa aaactttgtt gagcgcagct ggttatggtc cgcaaaaacc
     2401 gctgaagctg acgcttttgt ataacacttc agaaaaccat caaaaaattg cgattgctgt
     2461 agcatcgatg tggaaaaaga accttggcgt agatgttaaa ttgcaaaatc aggaatggaa
     2521 aacctatatc gatagccgta acaccggcaa ttttgatgtt atccgcgcct catgggtggg
     2581 ggattataat gaaccctcca ctttcctgac attattaacg tcaacgcatt caggaaatat
     2641 ttcacgcttt aacaatccgg catacgacaa agttctggcc caggcatcga cggaaaatac
     2701 cgttaaagcg cgtaatgccg attacaacgc ggcagaaaaa atcctcatgg agcaagcacc
     2761 gattgcacca atttatcaat ataccaatgg acgattaatc aagccgtggc tgaaaggtta
     2821 tcccattaat aacccggaag atgtggcgta cagccggatt atgtatattg tgaagcattg
     2881 atgtgatggg aactggcgtt acccttgtgg ataacgccag tgatgtctga tttagcgccc
     2941 ctgttccggc ggtgtaatgt tatccatata cagcgtctgg ctggggaagg caaagtccgc
     3001 gccgtgtgac tgcacaatat cgataatctt caaataaacg tcttgttgtg cagcaagcca
     3061 ttcagcccat accgtggttt tggtaaagca ataaaccata atattcaatg acgagtcggc
     3121 aaactggttg aaataaacca gtaaggtttg tcgctggtcg atggccgggt gatttttcag
     3181 catctcacgt acggcttcga caataacgcc cacttttgcc gcatcctcat aacgtaaacc
     3241 aatggtcgtg gtaatgcggc ggttggtcat tcgtcctggg ttttctacgc tgatcgacga
     3301 aaacagcgag ttcggtacgt acaatggacg attatcaaag gtcgtaattt tggtaattcg
     3361 ccagccaatt tccgctactg taccttcgat atttctgtcc ggtgaacgga tccagtcgcc
     3421 aatactgaaa ggacggtcga aatagagcat gatcccggaa aagaaattac tcagaatatc
     3481 tttaccggcc ataccgacag ccagaccacc aataccacca aaggtcagca agccagaaag
     3541 gctcatgccg aaatgttcgc cataaagcag aacaagcacc acaataatgg tgattttgat
     3601 aatgcgcgac ataatccgcg cactggtgat atcgcgacct tttttaatct gctgtttttc
     3661 aaactgatta atcagcaaaa atagcttaat cgtcagaata accgcaatca gggacgtaca
     3721 gataaaatcg ataacgcctg gggtgataaa tttgagttta tagttttcta taacataatt
     3781 aataatgcta ccaacagcac tgataattat ggtgtagatt aaaaattgca ccgcatggaa
     3841 taaaaaacct tttcttttac gatttccgcg gcgaaaccaa aagctcatca gaatcaatgc
     3901 tgcgcagcta ccgaaaataa tgaccagatt aagcgcatta tttgtaaaca gttcagcgat
     3961 cattgtttta tcaggctcct ccagataatt gtcgtcatgc cggaaccccc tggcggggct
     4021 attttaccgc gacaattcat tcagatcatc aatagtcagg gaaggaagta gcaacattag
//
LOCUS       DADMJB010000240         4070 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.243, whole genome shotgun sequence.
ACCESSION   DADMJB010000240 DADMJB010000000
VERSION     DADMJB010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4070)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4070)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4070
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.243"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..1046)
                     /locus_tag="JN078_003970"
     CDS             complement(<1..1046)
                     /locus_tag="JN078_003970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708400.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein"
                     /protein_id="HAY9042981.1"
                     /translation="MREINMLRNISSCLFPHISKITSPNHYLSEWDDWEKQGLPEEQR
                     TEAVRRLRACLTSKGHKLDLRALALSSLPVLPACIKKLDVSCNKLTILTDLPENIKEL
                     IARDNFLTHISALPHYLITLDVSENQLENLPLLPDTIKSLSAEYNRLSTLPSLPLNLK
                     KLEVRNNELQTLPSLPSNLKILKVAHNHLTELPPLPRRLQLLFAYSNRLSNLPNIQEN
                     IIMRRFFYFENNQITTIPTNLFRLDPHITIEIANNPLSDQTLLFLIQQTSVPNFNGPQ
                     FRISLSDQNRLFLRQMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVS
                     TQWTSFSTEENSRA"
     gene            1537..1647
                     /locus_tag="JN078_003971"
     CDS             1537..1647
                     /locus_tag="JN078_003971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA invertase"
                     /protein_id="HAY9042982.1"
                     /translation="MLIGYVRVSTNDQNTDLRRNALNCAGYELIVERMGA"
     gene            1927..2922
                     /gene="pgl"
                     /locus_tag="JN078_003972"
     CDS             1927..2922
                     /gene="pgl"
                     /locus_tag="JN078_003972"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HAY9042983.1"
                     /translation="MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVS
                     PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYN
                     AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG
                     HLVAQDPAEVTTIEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL
                     DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ
                     PRGFNVDHSGKYLIAAGQKSHLISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH"
     gene            complement(2963..3915)
                     /locus_tag="JN078_003973"
                     /pseudo
     CDS             complement(2963..3915)
                     /locus_tag="JN078_003973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308823.3"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
BASE COUNT         1091 a          830 c          952 g         1197 t
ORIGIN      
        1 aatgcccggg aattctcctc ggtggaaaaa gaagtccatt gtgtagaaac ctcccgacga
       61 tctgcttcag gaaaccaggc tgccacagtt tcgggaagag gggggatctg aaagttctgc
      121 cccccttcag tgatgactct gatatggcgc gaatgtaaat tttgcggcaa catctggcgt
      181 aaaaacagtc tgttttggtc tgacagggaa atacgaaact gaggcccgtt aaaatttgga
      241 accgaagttt gctgtattaa gaatagcaga gtttgatctg ataaggggtt atttgcaatc
      301 tcaatagtta tatgaggatc taaacgaaaa agatttgtcg ggattgtagt tatttggttg
      361 ttttcaaaat aaaaaaatct tctcatgata atattttctt ggatgtttgg taagttgctt
      421 aatctattgc tatatgcaaa aagaagttgc agtctcctag gtaaaggggg cagttcagta
      481 agatggttgt gcgcaacctt aagtatctta agattagaag gcagagatgg aagagtttgc
      541 agttcgttgt tcctaacctc aagttttttt aaattcaagg gtaatgaagg cagtgtggat
      601 aacctattat actctgcgct tagtgatttg atggtgtctg gtaataacgg cagattctct
      661 aattgatttt cggacacatc caaagttatt agataatgtg gtaatgcaga tatatgtgtt
      721 aagaaattat ctcttgcaat aagttcttta atattttcag gtaaatcagt aaggatggtt
      781 aatttattac agctcacatc aagcttttta atgcaagcag ggagtacagg taacgaggaa
      841 agcgccaagg ctcgcaggtc cagtttatgc cccttagagg taagacatgc acgaagtctt
      901 cttaccgcct cagtacgctg ttcttccggt aacccctgtt tctcccaatc atcccattcg
      961 gacaaataat ggttggggga tgtaattttg ctgatatgtg gaaataaaca ggatgaaata
     1021 tttctgagca tattaatttc tcgcatatgg atatggaatt agattgtgaa taaattgtat
     1081 ttaatgtatc tctcctaatg aggagggtgt ttcagaatat tcgccataag ggaatgagtg
     1141 ttatatcatg ctttctatcc tggtaagtat atttgctttt ttcgtatatt tggttcatct
     1201 ttttttgatg ttttacatat tcacaatgca gaggatttat accagaagac attagtcttg
     1261 agtaagatac tacaacatct ccaactattt tagccagcct gactacttga cttggtaata
     1321 tttgttgcta ataatcatgt ataaaataag cttatataca tagtaacttc agcaaaggat
     1381 ttagtaatga tccaaatcat atatcaatgt actgtttttt tctttaaaaa aacagtacat
     1441 tctattttat aatgactgtg tattcccatg gaaggagatc acccaattct cccccccgac
     1501 ttttgacgca gtgtcttgtt aacaggggga tttaccatgc ttattggcta tgtacgcgta
     1561 tcaacaaatg accagaacac cgatctacga cgtaatgcgt tgaactgtgc aggatatgag
     1621 ctgattgttg agcgaatggg agcttgattg gaagttgtta gggtatggtg tttacggtcg
     1681 ttgatatggc gaacaaacgc ggggagcgtc acgctcccta aatggtcgcg aaaatatctg
     1741 tggcattgtc aaatttgtga cggtgactaa tattttaatg atatgccatt cgaaatggtg
     1801 tgctaacgta ttgatttaat tgtgacgcga tgttgtattt tatcgcgttt tgttgtctgt
     1861 ttttcattcg cttgatgttg ctatttacat gaaaaataaa gaatttattg tttttgaggt
     1921 gtgtttatga agcaaacagt ttatatcgcc agccctgaga gccagcaaat tcacgtctgg
     1981 aacctgaatc atgaaggcgc actgacgctg acacaggttg tcgatgtgcc ggggcaggtg
     2041 cagccgatgg tggtcagccc ggacaaacgt tatctctatg ttggtgttcg ccctgagttt
     2101 cgcgtcctgg cgtatcgtat tgccccggac gatggcgcac tgacctttgc cgcagagtct
     2161 gcgctgccgg gtagtccgac gcatatttcc accgatcacc aggggcagtt tgtctttgta
     2221 ggttcttaca atgcgggtaa cgtgagcgta acgcgtctgg aagatggcct gccagtgggc
     2281 gtcgtcgatg tggtcgaggg gctggacggt tgccattccg ccaatatctc accggacaac
     2341 cgtacgctgt gggttccggc attaaagcag gatcgcattt gcctgtttac ggtcagcgat
     2401 gatggtcatc tggtggcgca ggaccctgcg gaagtgacta ccattgaagg ggccggcccg
     2461 cgtcatatgg tattccatcc aaacgaacaa tatgcgtatt gcgtcaatga gttaaacagc
     2521 tcagtggatg tctgggaact gaaagatccg cacggtaata tcgaatgtgt ccagacgctg
     2581 gatatgatgc cggaaaactt ctccgacacc cgttgggcgg ctgatattca tatcaccccg
     2641 gatggtcgcc atttatacgc ctgcgaccgt accgccagcc tgattaccgt tttcagcgtt
     2701 tcggaagatg gcagtgtgtt gagtaaagaa ggcttccagc caacggaaac ccagccgcgc
     2761 ggcttcaatg ttgatcacag cggcaagtat ctgattgccg ccgggcaaaa atctcacctc
     2821 atctcggtat acgaaattgt tggcgagcag ggactactgc atgaaaaagg ccgttatgcg
     2881 gtcgggcagg gaccaatgtg ggtggtggtt aacgcacact aaccgctgat ttaaccggcg
     2941 cagtctctcc tgcgccggtg tattaaccta tctcctgtaa cgcatgtctc tggcgttcga
     3001 cgatattggt ccacaaattg tctttatcgt cagtccacaa attaatcagc aaggcaaaaa
     3061 agcgttcagc tgccggagaa agcacggcat ctttgcggcg aataatcccc aatgtccgac
     3121 gtataacggg ttccaccagt gggataccaa taatcgaaga atagggcgca tggggcattg
     3181 ccagaccagg aagcgccgaa atccccagtc ctgcctccac tagtcctaat gacgtcgaaa
     3241 gatgacgcac ttcgtaaaac cagtccagct tccagggctt gtcggccagc tgttgttcta
     3301 tcaacagtcg gttgccgctg gaggagcgta cgccaatcat tttgtaaccc actaactcct
     3361 gccattctac aagctgcttt ttggccaatg gatggtcacg ccgacaggca gcacgaacgg
     3421 ctcgttgacc agtggggtaa aatcaatgga tgaatttgtg acgttgttca tgtttatgcc
     3481 aaagtctgat tcgttacaca gcaccgattc catgcaatta ttcgtgcctt gttccagaat
     3541 ccgcacttta atattgggat acagctcatt aaatttaccg attgccagcg gtaaaaaata
     3601 aaatactgcg gtcggaatac acgctaacgt caccatacca cgatgataag cattcatatc
     3661 acgaatatta aaaagcgttt catcgaattt ctttattaat tcccgcgcct ccgggagcaa
     3721 cctttttcct gcttttgtta acgtaacctt gcgagttgta cgctcaaata gttgaatatg
     3781 taaatcttcc tccatctttt ttattcttcg cgttaatgca ggttgcgtaa tattgagtaa
     3841 tttagcggca ttgttaaacg aactggactc tgccagtatg acaaatgcct tcatacttga
     3901 taattcatgc ttcattatta ctccggaaaa tggaagcgac gattttgggt ggctggccgt
     3961 taaaaatttt aactgcattt agccaactta aattaatgaa aaaatgttat taatcgttga
     4021 gctaaagtca ttagagatgc tttgccctta atgtaaccat atcgcaataa
//
LOCUS       DADMJB010000241         3911 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.244, whole genome shotgun sequence.
ACCESSION   DADMJB010000241 DADMJB010000000
VERSION     DADMJB010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3911)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3911)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3911
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.244"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(313..732)
                     /locus_tag="JN078_003974"
     CDS             complement(313..732)
                     /locus_tag="JN078_003974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309968.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAY9042984.1"
                     /translation="MVHEDKARKEFASRLALACENAGYEQHGRQAEIARRMKLTPKAV
                     SKWFNGETIPRREKLRELATLIGTTPTYLLGEDTEESGQVRFYQELNPRQKIIIDLLD
                     ELPDSETDELLKTLEEKKQKYNAIYEELARKKKQKAS"
     gene            812..1066
                     /locus_tag="JN078_003975"
     CDS             812..1066
                     /locus_tag="JN078_003975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAY9042985.1"
                     /translation="MNQKTLEDVIKTVRVAVVADVCGVSQRAIYKWMDNGKLPRTEYT
                     GETNYAEKIALASNGLFSADAILTIGRNKTTTKKLMGVDS"
     gene            1063..1488
                     /locus_tag="JN078_003976"
     CDS             1063..1488
                     /locus_tag="JN078_003976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HAY9042986.1"
                     /translation="MKIKHEHIRMAMNAWAHPDGEKVPAAKITKAYFELGMTFPELYD
                     DSHPEALARNTQKIFRWVEKDTPDALKKIQALLPAIEKAMPPLLVARMRSHSSAYFRE
                     LVETRERLVRDADDFVAVAIAGFNQMNRGGPAGNIVAVH"
     gene            1560..2630
                     /locus_tag="JN078_003977"
     CDS             1560..2630
                     /locus_tag="JN078_003977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001736248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage replisome organizer"
                     /protein_id="HAY9042987.1"
                     /translation="MANAWLRLWHDMPNDPKWRTIARVSGQPIATVMAVYIHLLVSAS
                     RNVTRGHIDVTTEDLASALDVTEEVIDSILQTMQGRVLDGDLITGWEKRQVLKEDNGN
                     ISQTAKSPAERKRAQRERERKREQNGDCHGASRYVTHMSRRVTTDKDTDKDTDQEDQN
                     TMVHGVKNATNQAGDVQTVNPGQPAGTTPEADSAYALKADSGAVQQAMTASPEQSHQL
                     QQPEADSAIQREADRVVPENTGQSVGRVDYPDVFEQVWREYPLRAGANPKKSAFSAWK
                     ARLREGVPPEAMLDGVRRYARYLAATGKTGTEFVQRATTFFGPDRNFENPWLLPVSGT
                     NNQRCVNHISEPDNEIPPGFRG"
     gene            2671..3093
                     /locus_tag="JN078_003978"
     CDS             2671..3093
                     /locus_tag="JN078_003978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001151247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF977 family protein"
                     /protein_id="HAY9042988.1"
                     /translation="MAKVFTQEEREKIKGQVLELVRQSGRETLRQLEAKTGATRYLMS
                     VLARELVASGDVYNSGYGLFPSEQARKDWQNARKKLSRAKLKKPSAVDPDLIWSLPDG
                     EIRRYDSRLNIICRECRKSEVMQRILSFYQGNFQEVMA"
     gene            3090..3395
                     /locus_tag="JN078_003979"
     CDS             3090..3395
                     /locus_tag="JN078_003979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001266129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4406 domain-containing protein"
                     /protein_id="HAY9042989.1"
                     /translation="MRVRVYIAGPMTGYKNFNREAFHNAEEELKREGHTVLNPAVLPD
                     GLTQPQYMDICMAMIRCVDAIYMLKGWQRSAGAKAELALAEKLGHAVIFQETASVQD"
     gene            3382..3837
                     /locus_tag="JN078_003980"
     CDS             3382..3837
                     /locus_tag="JN078_003980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000335116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ead/Ea22-like family protein"
                     /protein_id="HAY9042990.1"
                     /translation="MCKTNYQALRERYSPIQVPECPVCGDEMSIQRIFSRTHIVYACT
                     GEGDDGYFKTGRTFADEHYLKSRVTVVDVSAPDVLALLKELEVKDKRIAELTDALTQM
                     INAHKTTIRFGHERITECGGDCDSPEKMISENPDIRMAEAVLRAGIKTE"
BASE COUNT         1071 a          842 c         1049 g          949 t
ORIGIN      
        1 atcgatagta tccatgctga cctcatttcc ccttaacgcc ggggtagcgg aacaaaaacc
       61 tgctgcatag ttattaaagt tgaaccctgc cgtcatgttc ttacgcctcg ggctggctac
      121 ttaacccctg accactgcct ggtaactcga agtattgccc tgcattctgt ggggcggggt
      181 gggtggcagg tatataatgt actttgcgtt cattgttgta aagtgcttat ggtacatttt
      241 gtgtgtaaaa aaatgagatg ggataaagtg aagcacaaac ccggaggaag gcgctaccgg
      301 atttatgctg gtttaagagg ctttttgttt tttctttcgt gctaactctt cgtaaattgc
      361 attgtacttc tgttttttct cttcaagagt ttttaaaagt tcatctgtct cactgtcagg
      421 gagctcgtcc agaaggtcaa tgatgatttt ttgtcttgga tttaactcct gatagaaacg
      481 tacctgtcca ctttcttctg tatcctctcc caaaagatag gttggtgttg ttcctattag
      541 tgttgctaat tcccttaatt tctcccggcg aggaattgtt tcgccattaa accatttgct
      601 aaccgctttt ggtgttaatt tcattcgacg ggcaatttct gcctgccttc catgttgttc
      661 ataaccagcg ttttcacagg ctagcgcaag cctactggcg aactctttac gcgctttatc
      721 ttcatgaacc ataagttcaa tgatattcgc tcttgaatgt actgtcagtt ctgttatagc
      781 atgtactcaa agttcacatt gtgagggtga tatgaaccag aaaacacttg aagatgtaat
      841 caaaactgtt cgcgttgctg ttgtggccga cgtttgtggt gtcagccaaa gagcaatcta
      901 taaatggatg gataacggaa aattgcctcg cacagaatat accggcgaaa caaattacgc
      961 tgaaaaaatc gctcttgcat caaacggatt attttctgcc gatgcaattt taactattgg
     1021 caggaataaa actactacga aaaagctgat gggagttgat tcatgaaaat caagcatgaa
     1081 cacatccgca tggcgatgaa tgcctgggcg catccggacg gcgaaaaagt accggctgcg
     1141 aaaattacca aagcgtattt cgagctggga atgacgttcc cggaactgta tgacgacagc
     1201 catccggaag ccctggctcg caatactcag aaaattttcc gctgggtgga gaaagacacc
     1261 cctgatgcgc ttaaaaaaat tcaggcgttg ttaccagcta tcgaaaaagc aatgccacct
     1321 ctgctggtgg cccgaatgcg cagccatagc tcagcctatt ttcgggaact agtggagacg
     1381 cgggaacgac tggtgagaga cgctgatgat tttgtcgcag tggcgatcgc tggtttcaac
     1441 cagatgaatc gtggtggccc tgcaggaaat attgtggctg tgcattgact cgcaatattc
     1501 ataccggatc acttccggca atttgtgagt aaaaagattc ggtatcaaaa gaggtgagta
     1561 tggctaacgc ctggctcaga ttatggcatg acatgccaaa tgaccctaag tggcgaacaa
     1621 ttgccagggt gtcagggcag ccaattgcaa cagtgatggc agtgtatatc cacctcctgg
     1681 tgagcgcgtc acgaaatgtc acgcgaggtc acattgatgt cacgacagaa gatttggcaa
     1741 gtgcgctcga cgtgacagaa gaggtaattg attcaatttt gcagacgatg caggggcggg
     1801 tacttgatgg tgatttaatc actggatggg aaaaacgcca ggtgctgaaa gaggacaacg
     1861 gcaatatttc gcaaaccgca aaatctcctg cagagcgcaa gagggcgcag cgagagaggg
     1921 aaagaaagcg ggaacaaaat ggcgattgtc acggcgcgtc acgatatgtc acgcacatgt
     1981 cacgacgagt cacgacagat aaagatacag ataaagatac agatcaagaa gatcaaaaca
     2041 ctatggtcca tggcgtaaaa aacgccacga accaggcagg ggatgttcag accgtcaatc
     2101 ctggtcagcc agcaggcacg acaccggaag ccgattcagc gtatgcgctg aaagccgatt
     2161 cgggcgctgt gcagcaggcg atgaccgcaa gtccggagca atcacaccaa ctgcagcagc
     2221 ctgaagccga ttccgccatt cagcgggaag ccgatcgggt agtcccggaa aacaccgggc
     2281 agtctgtggg acgagtggat tatccggatg tgttcgaaca ggtctggcgg gagtacccgt
     2341 tgcgtgccgg ggcaaacccg aagaaatccg ctttcagtgc ctggaaggcc agattacgcg
     2401 agggggtgcc accagaggcc atgctggatg gcgtgaggcg ttacgcaaga tacctggcgg
     2461 ctaccgggaa aacgggaacg gaatttgttc agcgagcgac gacgtttttt ggaccggacc
     2521 ggaattttga gaacccctgg ttgctcccgg taagcggcac gaacaaccag cgttgtgtga
     2581 atcatatttc tgaaccggat aacgaaattc cgccgggctt cagggggtaa gtgttaattt
     2641 ctggtcatga ggtaattttc aggagggctt gtggcaaaag tttttacaca agaagagcgg
     2701 gaaaaaatta aagggcaggt tcttgaactc gtacgccaga gtgggcgcga gacgttacga
     2761 caactggaag ctaaaactgg ggcaacaaga tatctgatga gcgttctggc cagagagctg
     2821 gttgccagtg gcgatgtata caactctggt tacgggttat tcccgtctga acaggcgcgt
     2881 aaggactggc aaaatgcccg taaaaagctc tcaagggcaa agctgaagaa accatctgcg
     2941 gttgatccgg accttatctg gtcattacct gacggagaaa tacgtcgcta cgacagtcgc
     3001 ctaaacataa tctgtcgcga gtgccggaag agcgaagtta tgcagcgcat attgtcgttt
     3061 tatcagggta attttcagga ggtgatggcg tgagggtgag agtctatatc gccggtccaa
     3121 tgaccgggta taaaaatttc aaccgtgagg cgtttcacaa tgcggaagag gaactgaaac
     3181 gggaagggca taccgtctta aacccggcag tacttccgga cgggctgaca cagccgcagt
     3241 acatggatat ctgcatggcg atgattcgtt gtgtggatgc gatttacatg ctgaaaggct
     3301 ggcagcggtc agcaggcgct aaggcagaac tggcgctggc ggagaaactg gggcatgcgg
     3361 tgatttttca ggagacagcc agtgtgcaag actaattacc aggcattacg tgaacgttat
     3421 tcaccaattc aggtgccgga atgtcctgtt tgtggcgatg aaatgtcgat acagcgcata
     3481 ttttccagaa cgcatattgt gtatgcctgc acaggtgagg gggatgatgg atattttaaa
     3541 actggtcgaa cttttgcgga tgagcattac ctgaaatcgc gcgtaaccgt cgttgatgtt
     3601 agcgctcctg acgtactggc tttactgaaa gagctggaag ttaaagacaa acgcattgca
     3661 gaattgacag atgcgcttac acaaatgatt aatgcgcaca aaaccacaat tcgttttggt
     3721 catgaacgca taactgaatg tggtggtgat tgcgactcgc cggaaaagat gatttcagaa
     3781 aatccggata tcagaatggc agaggctgtt ttgagagcag gaataaaaac tgaataatta
     3841 aatttagcac agcaaataaa atttaatcct taaccggagg gatttctgca ccctcagaac
     3901 atcaggaggc c
//
LOCUS       DADMJB010000242         3851 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.245, whole genome shotgun sequence.
ACCESSION   DADMJB010000242 DADMJB010000000
VERSION     DADMJB010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3851
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.245"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..409
                     /locus_tag="JN078_003981"
     CDS             <1..409
                     /locus_tag="JN078_003981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAY9042991.1"
                     /translation="FTTIMKENGLKANSLCVEITETVIERINEHFYLNIEQLRKQGVR
                     ISIDDFGTGLSNLKRFYEINPDSIKVDSQFTGDIFGTAGKIVRIIFDLARYNRIPVIA
                     EGVESEDVARELIKLGCVQAQGYLYQKPMPFSA"
     gene            447..1775
                     /locus_tag="JN078_003982"
     CDS             447..1775
                     /locus_tag="JN078_003982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HAY9042992.1"
                     /translation="MSRINKFVLTVSLLIFIMISAVACGIYTQMVKERVYSLKQSVID
                     TAFAVANIAEYRRSVAIDLINTLNPTEEQLLVGLRTAYADSVSPSYLYDVGPYLISSD
                     ECIQVKEFEKNYCADIMQVVKYRHVKNTGFISFDGKTFVYYLYPVTHNRSLIFLLGLE
                     RFSLLSKSLAMDSENLMFSLFKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPTGLYVF
                     AYKKDVYLRVCTLIIFFAALVAVISGASCLYLVRRVINRGIVEKEAIINNHFERVLDG
                     GLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGSYLCLFDVDKFKNI
                     NDTFGHLLGDEVLMKVVKILKSQIPVDKGKIYRFGGDEFAVIYTGGTLEELLSILKEI
                     VHFQVGSINLSTSIGVAHSNECTTVERLKMLADERLYKSKKNGRAQISWQ"
     gene            complement(1822..3147)
                     /gene="rimO"
                     /locus_tag="JN078_003983"
     CDS             complement(1822..3147)
                     /gene="rimO"
                     /locus_tag="JN078_003983"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HAY9042993.1"
                     /translation="MSKVTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDD
                     ADMVIVNTCGFIDSAVQESLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITG
                     PHSYEQVLEHVHHYVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIP
                     SMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTS
                     MVSLCEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMK
                     RPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCF
                     KYSPVEGADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDE
                     EGAIGRSMADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV"
     gene            3360..3743
                     /gene="bssR"
                     /locus_tag="JN078_003984"
     CDS             3360..3743
                     /gene="bssR"
                     /locus_tag="JN078_003984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator BssR"
                     /protein_id="HAY9042994.1"
                     /translation="MFVDRQRIDLLNRLIDARVDLAAYVQLRKAKGYMSVSESNHLRD
                     NFFKLNRELHDKSLRLNLHLDQEEWSALHHAEEALATAAVCLMSGHHDCPTVITVNAD
                     KLENCLMSLTLSIQSLQKHAMLEKA"
BASE COUNT         1007 a          857 c          949 g         1038 t
ORIGIN      
        1 ttttaccacc atcatgaaag aaaatggcct gaaggcgaac agcctctgtg ttgagatcac
       61 tgaaaccgtg atcgagcgaa ttaatgaaca tttttatctc aatattgaac aactgcgtaa
      121 acaaggggta cggatatcga ttgatgactt tggcaccggt ttgtcaaacc tgaaacgttt
      181 ttatgaaatt aatccagaca gcataaaggt ggactcgcaa tttaccggcg atattttcgg
      241 tactgcggga aaaattgtgc gcattatttt cgatctggca cgctataacc ggatcccggt
      301 gattgcggaa ggcgtagaga gcgaagacgt tgcacgcgaa ttaattaaat taggatgtgt
      361 tcaggctcag gggtatctgt accagaaacc tatgccattc tccgcctagg ataaaagtgg
      421 aaaattagta aaagagtagt ttacgtatgt ccagaatcaa taagttcgta cttacagtca
      481 gtctgctgat ttttatcatg atttcagcag ttgcctgcgg gatctacact caaatggtaa
      541 aggaacgggt gtatagcctg aaacagtccg ttattgatac tgcttttgcg gtggcaaata
      601 ttgctgaata tcggcgtagc gtggcaattg atcttatcaa cacgctaaat cccactgagg
      661 aacagctgtt ggttggtttg cgcacagctt acgccgactc ggtttccccc tcttatttgt
      721 acgatgtcgg tccttatctg atttccagtg acgaatgtat tcaggtaaag gagttcgaga
      781 aaaattattg tgcagatatt atgcaggttg tgaagtatcg acatgtcaaa aatacagggt
      841 ttatctcttt tgacggtaaa accttcgtct attacctcta tccggtaact cacaatcgta
      901 gtctgatatt tttgcttggt ctggagcgtt tttctttact gtcaaaatcg ctggcgatgg
      961 acagcgagaa cctgatgttc tctctattta agaacggtaa accggtgacc ggtgatgaat
     1021 ataatgctaa aaacgccatc ttcaccgttt cggaagcgat ggagcacttc gcctatttgc
     1081 cgaccggatt gtacgtattt gcgtataaaa aagatgttta tttgcgggtc tgtacattga
     1141 ttattttctt tgccgcattg gtggctgtga tatcgggtgc cagttgcctc tatctggtac
     1201 gcagagtgat taatcgtggt attgtggaga aagaagccat cattaataac cattttgaac
     1261 gcgtactgga tggcgggctt ttcttttcgg ctgccgatgt caaaaaactc tacagtatgt
     1321 ataactcggc gttcctggac gacctgacca aagcaatggg cagaaaatcc tttgacgaag
     1381 atttaaaagc gctgccggaa aaaggcagtt atttgtgcct gtttgacgtc gataaattca
     1441 aaaacattaa cgacaccttc ggtcatttgc tgggcgatga agtgttgatg aaagtggtga
     1501 aaatccttaa atcacagatc ccggtagata aaggtaaaat ctaccgcttc ggcggtgacg
     1561 aatttgcggt gatttatacg ggtggaacgc tggaagagtt gctatcgatt ctaaaagaaa
     1621 tcgttcattt ccaggtggga agcattaatt taagtaccag tatcggtgta gcgcattcaa
     1681 atgaatgtac caccgtcgaa cgcttgaaaa tgctggcgga tgagcggctg tataagagta
     1741 agaaaaacgg cagggctcag attagctggc agtaatcatt attcgcaggc cggacaaatg
     1801 attttgcccg gcctgaatta attaaacccg gctaccccac aaatcgtact catcggcgtg
     1861 ctcgactttc acacgcagga tatcacccgg cttaacgttg gtttcaccat tgagataaac
     1921 cgcgccgtcg atttccggtg catctgccat gctgcgacca atcgcgcctt cttcgtccac
     1981 ttcgtcgata atcaccagaa tttcacggcc cactttctct tgcaggcgct cggcggaaat
     2041 ctgctgctgc agctgcatga aacggttcca gcgttcttct ttaacttctt ccggaacctg
     2101 gtcaggcagg gcattggcgt ctgcaccttc aaccgggctg tatttaaagc agccaacgcg
     2161 atccagacgc gcttctttca ggaagtcgag tagcatctgg aaatcttctt ctgtctcgcc
     2221 agggaagccg acaataaagg ttgagcgtag ggtcagttcc gggcagattt cgcgccactg
     2281 tttgatgcgc gccagttggc gatctacaga acccggacgc ttcatcagtt tgagaatgcg
     2341 cgggctggcg tgctgcaacg gaatgtccag atacggcagg attttgcctt ctgccatcag
     2401 tgggatgacg tcgtccacat gcggataagg gtaaacgtag tgcagacgtg tccagatccc
     2461 cagtttcgat aactgttcgc acaggctgac catgctggtt tttaccggct cgccgttgtg
     2521 gaagccagta cgatgtttaa catcaacgcc ataggcggaa gtatcctgcg agatcaccag
     2581 aatctcttta acgcccgcat ctaccagacg tttcgcttca cttaacactt cgccaatcgg
     2641 acggctcacc aggtcgccgc gcatagacgg aataatgcag aaggtgcagc ggtgattaca
     2701 gccttccgaa attttcagat aggcataatg acgcggcgtc agtttcacac cttgttctgg
     2761 caccaggctc aggaatgggt tgtgtttcgg ttttggcacg tagtgatgaa cgtgctccag
     2821 aacctgctca tagctatgag gcccggtgat ttccagcact ttcgggtgga cttcgcggat
     2881 ctgatcttct tttgccccca gacaaccggt cacaattacc ttgccgtttt cattcaacgc
     2941 ttcaccaatg gcttccagtg attcttgtac cgcgctgtca ataaagccgc aggtgttgac
     3001 gatcaccatg tccgcatcgt catagctcgg taccacgtca taaccttcag tgcggagttc
     3061 ggtgagaata cgctctgaat cgacaaggtt tttcggacag ccaagggaaa caaagccgat
     3121 tttcggctgg ggagttactt tgctcatagc ttaaaaaata ttcagttaca ggaaaggtca
     3181 gggcagggat tctacagagt tctggataaa atttgtatcg caatctcatt cgctggcgga
     3241 ggcgaaggaa atgtaaattt tgttaattcg gcgtgaagaa ttgatcctgg acagcatttt
     3301 gctcaaaaaa tagccatact atttaattgc aacaaggctg gaaagaggag gatcgaagta
     3361 tgttcgttga cagacagcga atcgatctgc tgaaccggtt gatcgacgca cgcgttgacc
     3421 tcgctgcata cgtgcaactg aggaaggcaa aaggatacat gtccgtcagc gaaagcaatc
     3481 atctacgaga taactttttt aaactgaatc gcgaactgca cgataaatcg ctgcggttga
     3541 atcttcatct ggatcaggaa gagtggagtg ctcttcatca tgctgaagaa gcattagcga
     3601 cagccgcagt atgtttgatg agtgggcacc atgattgccc gactgttatt accgtcaacg
     3661 ccgataagct tgaaaattgt ctgatgagct taacgctgag tatccagagc ctgcagaagc
     3721 acgccatgct tgagaaggcc tgaaaactaa gggggagaaa gcgtctcccc cttcatgttt
     3781 aagtttttgt aaaaatgaat ttgttatctc ctccactgac tacgctttaa gccagagtca
     3841 atccggaggc g
//
LOCUS       DADMJB010000243         3817 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.246, whole genome shotgun sequence.
ACCESSION   DADMJB010000243 DADMJB010000000
VERSION     DADMJB010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3817)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3817)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3817
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.246"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            17..253
                     /locus_tag="JN078_003985"
     CDS             17..253
                     /locus_tag="JN078_003985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004982904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C TorY domain protein"
                     /protein_id="HAY9042995.1"
                     /translation="MNPGTDLTVVDASGKQPIVLLQGYQMQGSENTLYLAAGQRLALA
                     TLSEEGIKALTLNGEWQAGEFSASNMVNRNTGCW"
     gene            193..1575
                     /locus_tag="JN078_003986"
                     /pseudo
     CDS             193..1575
                     /locus_tag="JN078_003986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707760.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
     gene            complement(1740..2711)
                     /gene="cmoB"
                     /locus_tag="JN078_003987"
     CDS             complement(1740..2711)
                     /gene="cmoB"
                     /locus_tag="JN078_003987"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HAY9042996.1"
                     /translation="MIDFGNFYSLIAKNHLSHWLETLPAQIANWQREQQHGLFKQWSN
                     AVEFLPEIKPYRLDLLHSVTAESEEPLSTGQIKRIETLMRNLMPWRKGPFSLYGVNID
                     TEWRSDWKWDRVLPHLSDLTGRTILDVGCGSGYHMWRMIGAGAHLAVGIDPTQLFLCQ
                     FEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYHRRSPLEHLWQLKDQLVN
                     EGELVLETLVIDGDENTVLVPGDRYAQMRNVYFIPSALALKNWLKKCGFVDIRVVDVC
                     VTTTEEQRRTEWMVTESLSDFLDPHDPSKTVEGYPAPKRAVLIARKP"
     gene            complement(2708..3451)
                     /gene="cmoA"
                     /locus_tag="JN078_003988"
     CDS             complement(2708..3451)
                     /gene="cmoA"
                     /locus_tag="JN078_003988"
                     /EC_number="2.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HAY9042997.1"
                     /translation="MSHRDTLFSAPIARLGDWTFDERVAEVFPDMIQRSVPGYSNIIS
                     MISMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHI
                     DAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGAL
                     VLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARL
                     HKAGFEHSELWFQCFNFGSLVALKAEDAA"
     gene            complement(3492..>3817)
                     /locus_tag="JN078_003989"
     CDS             complement(3492..>3817)
                     /locus_tag="JN078_003989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310606.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9042998.1"
                     /translation="RLQYRVAYGDGGFSELQSAIRIHGNAVEYIPIAIVLMLFMEMNG
                     AETWMVHICGIVLLAGRLMHYYGFHHRLFRWRRSGMSATWCALLLMVLANLWYMPWEL
                     VFSLR"
BASE COUNT         1009 a          950 c         1009 g          849 t
ORIGIN      
        1 aggcgagctg gctaccgtga atcctggtac cgatctcacc gtcgttgatg ccagtggcaa
       61 acagccgatc gttctgttgc agggttatca aatgcagggc agtgaaaaca cgctctacct
      121 ggcggcaggt caacggctgg cgctagccac attaagtgaa gaaggtatca aggcgctcac
      181 gctaaacggg gaatggcagg ctggggaatt cagcgccagc aatatggtga acagaaacac
      241 tggatgctgg tgacgctggc ggcggtgtta gggcagattg gtacaccggg cggcggtttt
      301 ggtttctctt atcattactc caatggtggc aacccgacac gtgttggcgg cgtgctgccg
      361 gaaatgtctg cggcgattgc cggacaggcc agcgaggccg ctgatgatgg cggaatgagg
      421 gcgattcctg ttgcccgtat cgtcgatgcg ctggaaaatc ctggcggcaa atatcagcat
      481 aacggtaaag agcaaacgta tccgaatatc aaaatgatct ggtgggcggg tggcggtaac
      541 tttacccatc accaggatac taatcgtctg attaaagtat ggcagaaacc ggagatgatc
      601 gtcgtttctg aatgctactg gaccgcagct gctaaacatg cagatatcgt attaccgatc
      661 accacatcgt ttgagcgcaa tgacttgacg atgaccggtg attacagcaa ccagcatatt
      721 gtgccgatga agcaggctgt cgctccgcaa tttgaagcgc gaaacgattt tgatgtgttt
      781 gccgatcttg cggaattact gaaacctggc ggaaaagaga tctataccga aggtaaagat
      841 gaaatggcgt ggctgaaatt tttctatgat gccgctcaga aaggtgcccg tgcgcaacgc
      901 gtgactatgc cgatgtttaa tgccttctgg cagcaaaata aactgatcga aatgcgccgc
      961 agcgagaaga acgaacagta cgttcgttat gctgatttcc gcgccgatcc ggtgaaaaat
     1021 gcgctgggta cgccaagcgg caaaattgag atttactcca aaacgctgga aaaatttggc
     1081 tataaggatt gcccggcaca tccaacctgg cttgcgcctg atgagtggaa gggtaccgcc
     1141 gacgagaagc agttgcagct tctgaccgca catccggcac accgtttaca tagtcagctt
     1201 aactatgcgg aactgcgtaa aaaatatgcg gttgcagatc gtgaaccaat cactattcat
     1261 accgaagatg ctgctcgctt tggtattgcg aatggtgatc tggtgcgtgt gtggaacaaa
     1321 cgtggtcaga ttctgacagg cgcggtggtg actgacggga tcaaaaaagg cgtggtatgc
     1381 gtgcatgaag gtgcatggcc agatctggaa aatggcttgt gtaaaaacgg cagtgcgaac
     1441 gtgttaacgg cggatatccc cagctcgcag ctggcaaatg cctgtgccgg taactctgcg
     1501 ctggtgtata tcgaaaaata tacgggtaac gcaccgaagt taacggcatt tgataagcct
     1561 gctgttcagg cgtaagaagt gaatagcgcc cggaaacggg cgctgaggtt atgcaaacgt
     1621 aaaactgcct gatgcgctat gcttatcagg tctacatagt ccctgcaata gattgaatta
     1681 gcaagggttt gtaggccgga taaggcattc acgctgcatc cggcagtaat accagacctt
     1741 tacggcttgc gcgcaatcag caccgcgcgt ttaggcgcag gataaccttc aactgtctta
     1801 ctcggatcat gtgggtcgag gaaatcggac agagattcgg taaccatcca ttcagtgcgt
     1861 cgctgctctt cagtagtggt aacgcacaca tccacaacgc ggatatctac aaaaccacac
     1921 ttcttcagcc agtttttcag cgccagcgcg gaagggatga aatagacatt acgcatttgc
     1981 gcgtaacgat cgcctggtac cagcaccgtg ttctcatcgc catcaataac cagcgtttcc
     2041 agcaccagtt caccctcatt caccagttga tctttcaact gccagagatg ctccagcggc
     2101 gaacggcgat ggtaaagcac gcccatcgaa aagacggtat caaaggcttt cagtgccgga
     2161 agctgttcaa tacctaacgg taacaaatgt gcgcgctgat cgttacccag tagtttacgc
     2221 accgcttcaa actggcacag aaacagttgc gtagggtcga tccccaccgc gaggtgcgcg
     2281 cctgcgccaa tcatgcgcca catgtgataa ccgctgccgc agccgacatc cagaatggtg
     2341 cgtccggtta aatcagaaag atggggcaga acacgatccc atttccagtc ggaacgccat
     2401 tcggtatcga tgttgacgcc atacagtgag aacggccctt tgcgccatgg catcaggttc
     2461 cgcataagcg tttcaatgcg tttaatttgc ccggtgctca gtggctcttc gctttcggcg
     2521 gttacgctat gcaataaatc cagacgatac ggtttaattt caggcagaaa ttccaccgcg
     2581 ttggaccact gcttaaacag cccgtgctgc tgctcgcgct gccagttagc aatctgcgcg
     2641 ggcagcgttt cgagccagtg tgaaagatga tttttggcaa tcagagaata aaagttacca
     2701 aagtcgatca tgcagcgtcc tctgctttta atgccaccag tgaaccaaag ttaaagcact
     2761 ggaaccacag ctcgctatgc tcaaaaccgg ctttatgcag gcgtgcttta tgggtttcca
     2821 cggaatcggt cagcatcacg ttttccagca tgctgcgctt ctggctgatc tccagttcgc
     2881 tgtaaccgtt ggcacgttta aagtcgtggt gcatgttgaa caacagttca ccaactttgg
     2941 catcttcgaa actgaatttt tccgaaagca ccagcgcgcc gcccgggttc agtccttgat
     3001 aaattttatc cagtaatgcc tggcgctcgg aaggttccag gaattgcagg gtaaaattca
     3061 gcaccaccat cgatgcgttt tcaatggcga tatcgcgaat atcaccttca atgacgtcta
     3121 ctggcgtagg ggctttatag gcgtcaatat gacgacggca gcgttcaatc atcgccgggg
     3181 agttgtcgat ggcaataatt ttgcaattat catgatgaat gttgcgacgc accgagagcg
     3241 tcgccgcgcc cagagaacaa cccagatcgt aaacctgcgt accaggttga acgaagcgct
     3301 cggctaacat actaatcatg gaaataatat tggaatagcc gggaacggaa cgctggatca
     3361 tatccgggaa gacttcagct acccgttcat caaaggtcca gtcgcccagt ctggcgatag
     3421 gggcagaaaa tagcgtgtcg cggtgagaca taacgtaaaa atccgggaaa aagaaagtgg
     3481 cgtattgtgc gctaacgcag ggagaaaacc aactcccagg gcatatacca aagattcgcc
     3541 agcaccatca gcaacagcgc acaccaggtg gcgctcatgc cggaacgtcg ccagcgaaac
     3601 agacggtgat gaaaaccgta ataatgcatc agacgaccag caagcaaaac gatgccgcaa
     3661 atatgcacca tccaggtttc tgcgccattc atttccataa acagcatcag cacaatcgcg
     3721 atgggaatat attccaccgc gttaccatga atgcgaatag cgctttgcag ttcgctaaaa
     3781 ccaccgtcac cataggcaac gcggtactgc aaacgca
//
LOCUS       DADMJB010000244         3737 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.247, whole genome shotgun sequence.
ACCESSION   DADMJB010000244 DADMJB010000000
VERSION     DADMJB010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3737
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.247"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..860)
                     /locus_tag="JN078_003990"
     CDS             complement(<1..860)
                     /locus_tag="JN078_003990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008786992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HAY9042999.1"
                     /translation="MSSHFTPFTLKDISRPGGGFAMLAVDQREAMRLMFAAAGQPKPI
                     ADSVLTDFKVAATRILSPYASAVLADKQFCLEQIVEQGAVANSCGLIVAADLFIPGNG
                     IPVDSVEIDMSVDPHKAREMGAKAMKLLVLWREDEPAEERLAMVDKFVRRCRSAGLVS
                     IIEPVVRPPRRGWDFDRESAIVAAAAELGGTEADLYKAEMPLGGKGDEKTLLAACQQL
                     NDQMKMPWVILSSGVDADIFGRAVSIAMKGGASGFLAGRAVWASVVGAQDPQTMLRDV
                     SVPRLQRLAE"
     gene            complement(885..1763)
                     /gene="yihU"
                     /locus_tag="JN078_003991"
     CDS             complement(885..1763)
                     /gene="yihU"
                     /locus_tag="JN078_003991"
                     /EC_number="1.1.1.373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001318159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfolactaldehyde 3-reductase"
                     /protein_id="HAY9043000.1"
                     /translation="MATIAFLGLGQMGSPMANNLLQKGHSLQVFDVNAQAVDALVTQG
                     ATAAQTQAEAAAGAEFIITMLPNGDIVRQVLLGEKGVCEAVSSDALLIDMSTIHPLQT
                     DALIRELQEKGISMMDAPVGRTSVNAIDGTLLILAGGTDEQIARARPILMCMGNELVE
                     AGGPGMGIRVKLINNYMSIALNALSSEAAVLCESLGLNLDVAIKVMSGTAAGKGHFTT
                     TWPGKVLKGDLSPAFMVDLALKDLRIAVDVARETGTPLNMGIAAESYYAAASQDGKGR
                     QDWSALLNQVRQQAGL"
     gene            1936..2832
                     /locus_tag="JN078_003992"
     CDS             1936..2832
                     /locus_tag="JN078_003992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000196715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HAY9043001.1"
                     /translation="MTRIACVGITVQDRIYSLPTLPEGGGKYQANHYLEIGGGPAATA
                     AVAIAKLGVEVDFIGRVGDDSCGNTLLAELEGWGVNTAFCRRYPNARSSQSAILVDQH
                     GERIIVNYPSPDLGTDAEWLEAIDFSRYNLILADVRWHSGTEKAFSLARLAGVTTLLD
                     ADMTPQDISPLVALADHAVFSTPGLKRMTGLQSPEEGLFQATTQTAGKVYVTLGSEGS
                     LWIEDGHLCQQEAFSVNVVDTTGAGDVFHGALAVALAEKMPTKEAIRFASAVAAMKCT
                     QPGGRAGIPNREQTESFLSLYA"
     gene            2872..3660
                     /locus_tag="JN078_003993"
     CDS             2872..3660
                     /locus_tag="JN078_003993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000022208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HAY9043002.1"
                     /translation="MSIIEVTGNPRHDQLVHLIAERGYMNIEELAQLLDVSTQTVRRD
                     IRKLSEQGLITRHHGGAGRVSSVMNTAFEQRELSLTAEKRAIAEAVADYLPERCTVFI
                     TIGTTVEAVARALLNRRDLRIITNSLRVAQILYKNQDIEVMVPGGTLRAHNGGIIGPG
                     AVDFIEGFRADYLITSIGAIEHDGTLLEFDLNEALVARTMIKHARNTLLVADHTKFAA
                     SAAVSIGNARNVRAFFTDAPPPNSFCQLLSEENVELVVAEQEVS"
BASE COUNT          962 a          955 c          902 g          918 t
ORIGIN      
        1 atttctgcca accgttgtaa acgaggaaca gagacatcgc gcagcatagt ttgtggatct
       61 tgtgcaccaa caaccgacgc ccaaaccgct cgtccagcca ggaagcccga cgcaccacct
      121 ttcatggcaa tacttactgc acggccaaaa atatcggcat caacgccaga agaaagaatt
      181 acccacggca tcttcatctg atcgttaagt tgctgacagg cggcaagtaa ggttttttca
      241 tcgcctttgc cccctaatgg catctcggct ttgtaaagat cagcctctgt tccaccaagc
      301 tctgcggcgg cggcaacaat ggcgctttca cgatcaaagt cccaaccgcg acgaggtgga
      361 cgcaccacag gttcaataat gctcaccagc ccggcactac ggcagcgacg aacaaattta
      421 tcaaccattg ccagacgttc ctctgcgggt tcatcttcac gccagagtac aagtaatttc
      481 attgccttag cccccatttc acgggcttta tgcgggtcga cggacatatc tatttcaacg
      541 ctatcaaccg ggatgccatt acctgggata aaaagatcgg cagcgacaat caggccgcaa
      601 gaattagcaa cagcgccctg ctcgactatt tgctcaagac aaaattgttt atccgccaga
      661 acggcagaag cataaggaga aaggattcgg gtcgcggcaa ctttaaaatc ggtgagtaca
      721 ctgtcggcga tgggttttgg ctgccctgct gccgcaaaca tcaagcgcat ggcctcacgc
      781 tgatcgacag ctaacatggc aaatccacca cctgggcggg agatatcttt cagcgtaaat
      841 ggggtgaagt gggatgacat agaaactcct gttaatagat aaaattaaag accagcctgc
      901 tggcgaacct gatttagcag ggcactccag tcctgccgcc ctttgccgtc ttgacttgct
      961 gcagcgtaat aactttctgc tgcaatcccc atattgagcg gtgtccccgt ctcccgagcg
     1021 acgtcaactg caatacgcag atctttcaac gccagatcca ccatgaaggc gggtgaaaga
     1081 tcgcctttca gcactttgcc aggccaggtg gtcgtaaaat gtcctttccc tgctgccgta
     1141 ccactcatca ccttaattgc gacatcaaga tttaatccca gtgactcaca taacacagcg
     1201 gcctcggagg acagcgcatt aagcgcaatg ctcatatagt tgttaattag cttcacgcgg
     1261 atccccattc ctgggccgcc agcctcgacc agctcattac ccatgcacat aagaatcggg
     1321 cgtgcacgtg caatctgctc atcagtgcca cccgctaaaa tcagcaatgt gccatcaatc
     1381 gcattcacgg acgttctgcc cacgggagcg tccatcatac tgatgccttt ttcttgtaac
     1441 tcccgtatta atgcatcggt ctgtaaggga tgaatagtcg acatatcaat caataacgcg
     1501 tcagatgaaa cagcctcaca gacgcctttt tcccccaaca gaacctgtcg aacaatgtca
     1561 ccattgggaa gcatagtgat gataaattca gcgcctgctg ctgcttccgc ttgggtttgt
     1621 gccgcagtgg ccccctgcgt aactagcgca tcgacggcct gtgcattgac atcaaatacc
     1681 tgcaatgaat gccctttttg caatagattg ttagccattg ggctacccat ctgccccagc
     1741 ccgagaaatg caatggttgc catgaatact ctcctgtctg acattgacaa aataatgaca
     1801 attgaaaatt cgtttttgtc tgtttttgag catatttgtg atttatgttc aaaaacacga
     1861 cacgcatcac taatttgatc atttgcgtca tttaaattga ccaaagacga caaaattaaa
     1921 caggacaaga caaatatgac cagaattgca tgcgtgggta tcacagttca ggacagaatt
     1981 tattctttgc ccactctgcc ggagggcggc gggaaatatc aggcaaatca ttatcttgag
     2041 attggtggcg gcccggcagc aacagccgct gttgcaatcg caaagcttgg cgtggaggtt
     2101 gatttcatcg gtcgcgtcgg cgatgacagt tgtggaaata ccttacttgc agaacttgag
     2161 ggttggggcg tcaataccgc attttgccgc cgatatccta acgcccgttc gtcgcaatca
     2221 gcgatcctcg ttgatcagca tggcgaacgg attatcgtta attatccaag tcctgatctc
     2281 ggtactgatg ccgaatggtt agaagcgatc gatttctctc gttataatct gattctggcc
     2341 gatgttcgct ggcatagcgg tactgaaaaa gcattctcgc tagcgcgcct tgcgggtgtg
     2401 acaacgcttt tagacgccga tatgacaccg caggatattt ctccacttgt cgcgcttgcc
     2461 gatcacgccg tgttctcaac accagggctg aaacgcatga ctggcctgca gtctcctgaa
     2521 gaaggtttgt tccaggcaac gacacaaaca gcaggtaaag tgtatgttac gctgggttct
     2581 gaaggatcgt tgtggattga agatggtcat ttgtgtcaac aggaggcatt ttctgtcaat
     2641 gtggttgata ccactggagc aggcgatgtt tttcacggcg cactcgcggt agcgttggca
     2701 gaaaaaatgc caacaaaaga ggctattcgt tttgccagtg cggttgccgc gatgaaatgt
     2761 acccagcctg gcggtcgggc cggcattcct aatcgtgagc aaaccgaatc atttttgtca
     2821 ctttatgcgt aaaatggtaa acatctaccg aggaggggca agggagtatt catgagtatc
     2881 atcgaagtga caggtaatcc acgccatgac caactcgttc atctaatcgc agaacgcggt
     2941 tatatgaata ttgaagaact ggcacaactg ctggatgttt caacgcaaac cgtgcgccgg
     3001 gatatccgaa aactcagtga gcagggcttg atcacccgtc atcatggagg ggccgggcgc
     3061 gtctccagcg tcatgaatac cgcttttgag caacgggaac tttcgctcac cgccgagaaa
     3121 cgggcgatcg ctgaggcagt cgccgattac cttcccgaac gctgtaccgt ctttatcacc
     3181 atcggtacaa ccgtagaagc cgttgccagg gcattactca accggcgtga tttacgcatt
     3241 atcactaaca gcctacgtgt ggcacagatt ctttataaga atcaggatat tgaagtgatg
     3301 gtgccgggag gcactttacg cgctcataac ggcgggatta tcggcccagg agccgtggat
     3361 tttattgaag gcttccgcgc agattattta atcaccagta taggtgccat tgaacatgac
     3421 ggcaccctac tggaatttga tctaaatgaa gcgttagtcg cgagaacgat gattaaacat
     3481 gcgcggaata cattgttagt ggccgatcat acgaagtttg ccgcgtctgc tgccgtttca
     3541 attggcaatg cacggaatgt cagggctttt tttactgatg ccccgcctcc caattctttc
     3601 tgccagttgt taagtgaaga gaatgttgaa ctggtggttg ccgagcaaga agtatcctga
     3661 aattgaaatt tcggaaaatc cgctgggaat ttcagcggat tttgttttcc ataagcaaaa
     3721 aaaacctgcc agcgatg
//
LOCUS       DADMJB010000245         3728 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.248, whole genome shotgun sequence.
ACCESSION   DADMJB010000245 DADMJB010000000
VERSION     DADMJB010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3728)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3728)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3728
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.248"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(118..2187)
                     /gene="glyS"
                     /locus_tag="JN078_003994"
     CDS             complement(118..2187)
                     /gene="glyS"
                     /locus_tag="JN078_003994"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001291772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HAY9043003.1"
                     /translation="MSEKTFLVEIGTEELPPKALRSLVESFAANFTVELDNAGLAHGT
                     VQWFAAPRRLALKVANLAEAQPDREIEKRGPAIAQAFDAEGKPSKAAEGWARGCGITV
                     DQAERLTTDKGEWLLYRAHVKGESTEALLPNMVATSLAKLPIPKLMRWGASDVHFVRP
                     VHTVTLLLGDKVIPATILGIQSDRVIRGHRFMGEPEFTIDNADQYPEILRERGKVIAD
                     YEERKAKIKADAEEAARKIGGNADLSESLLEEVASLVEWPVVLTAKFEEKFLAVPAEA
                     LVYTMKGDQKYFPVYANDGKLLPNFIFVANIESKDPQQIISGNEKVVRPRLADAEFFF
                     NTDRKKRLEDNLPRLQTVLFQQQLGTLRDKTDRIQALAGWIAEQIGADVNHATRAGLL
                     SKCDLMTNMVFEFTDTQGVMGMHYACHDGEAEDVAVALNEQYQPRFAGDDLPSNPVAC
                     ALAIADKMDTLAGIFGIGQHPKGDKDPFALRRAALGVLRIIVEKNLNLDLQTLTEEAV
                     RLYGDKLTNANVVDDVIDFMLGRFRAWYQDEGYTVDTIQAVLARRPTRPADFDARMKA
                     VSHFRTLDAAAALAAANKRVSNILAKSDEVLSDRVNASTLKEPEEIKLAMQVVVLRDK
                     LEPYFAEGRYQDALVELAELREPVDAFFDKVMVMVDDKELRLNRLTMLEKLRELFLRV
                     ADISLLQ"
     gene            complement(2197..3108)
                     /gene="glyQ"
                     /locus_tag="JN078_003995"
     CDS             complement(2197..3108)
                     /gene="glyQ"
                     /locus_tag="JN078_003995"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HAY9043004.1"
                     /translation="MQKFDTRTFQGLILTLQDYWARQGCTIVQPLDMEVGAGTSHPMT
                     CLRALGPEPMAAAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLGSL
                     KELGMDPTIHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVT
                     GEITYGLERLAMYIQGVDSVYDLVWSDGPLGKTTYGDVFHQNEVEQSTYNFEYADVDF
                     LFTCFEQYEKEAQQLLALENPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILRI
                     RTLTKAVAEAYYASREALGFPMCNKDK"
     gene            complement(3203..3502)
                     /locus_tag="JN078_003996"
     CDS             complement(3203..3502)
                     /locus_tag="JN078_003996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043005.1"
                     /translation="MMMNAFFPAMALMVLVGCSTPSPVQKAQRVKVDPLRSLNMEALC
                     KDQAAKRYNTGEQKIDVTAFEQFQGSYEMRGYTFRKEQFVCSFDADGHFLHLSMR"
BASE COUNT          864 a         1006 c          959 g          899 t
ORIGIN      
        1 cataaaatta atatatgaga taatctttat tcagcagaag attattaaag gttgctgtat
       61 tatttagcga taataaaaaa agcctgccag atggcaggct ttttaataac ggcgttatta
      121 ctgcaacagc gaaatatccg caacgcgcag gaacagttcg cgcagtttct ccagcatggt
      181 cagacggttg agacgcaatt ctttgtcatc aaccatgacc atcactttat cgaagaaagc
      241 atcaaccggc tcacgcagct ctgccagttc gaccagcgca tcctggtaac gaccttccgc
      301 aaagtacggc tccagcttgt cacgtagcac cacaacctgc atcgccagtt taatttcttc
      361 cggctctttc agggtagagg cattcacgcg gtcgctcagc acttcgtcag atttcgccag
      421 aatgttagat acacgtttgt tcgccgccgc cagtgcagca gctgcatcca gggtacggaa
      481 atgcgatacc gctttcatac gggcatcgaa atcagccgga cgagtcggac gacgcgccag
      541 taccgcctgg atggtgtcaa cggtgtaacc ttcgtcctga taccaggcgc ggaagcgacc
      601 gagcataaag tcgataacat catcaaccac gttggcgtta gtcagcttat cgccatacag
      661 acgcactgct tcttcggtca gcgtttgcag atcaaggttg aggttcttct caacgataat
      721 tcgcagcacg ccaagtgcgg cacgacgcag cgcaaacggg tctttgtcgc ctttcggatg
      781 ctgaccgata ccgaagatac ccgccagagt atccatctta tcagcaatcg ccagcgcaca
      841 agctaccggg ttggacggca ggtcatcacc ggcaaagcgc ggctgatact gctcattcag
      901 cgcgacggct acgtcttccg cttcgccatc gtgacacgcg tagtgcatcc ccataacgcc
      961 ttgggtgtcg gtgaactcga agaccatgtt ggtcatcagg tcacacttag acagcaggcc
     1021 cgcacgggtt gcgtggttaa cgtcagcgcc aatctgttca gcaatccagc cagccagcgc
     1081 ctggatgcgg tcagttttgt cacgcagcgt acccagctgt tgctggaaca gcacggtttg
     1141 caggcgcggc aggttatctt ccagacgttt tttacggtcg gtattgaaga agaactcggc
     1201 atccgccaga cgtggacgaa cgactttctc gttaccagag ataatttgct gcggatcttt
     1261 cgattcgatg ttggcaacga agatgaagtt cggcagcagt ttgccatcgt tcgcatacac
     1321 cgggaagtat ttctggtcac ctttcatggt gtaaaccagg gcttcagccg gcaccgcgag
     1381 gaatttctct tcgaattttg cggtcagaac gaccggccac tccaccagcg aagccacttc
     1441 ttccagcagg ctttcgctta agtcagcgtt accgccaatc ttacgcgctg cttcttcggc
     1501 atcggcttta atcttcgctt tacgttcttc gtaatcggcg atgactttcc cgcgctcacg
     1561 cagaatttcc ggatactgat cggcgttgtc gatggtgaat tccggttcgc ccataaagcg
     1621 gtggccgcga atcacgcgat cggactgaat gcccagaata gttgccggaa tgactttgtc
     1681 gcccagcagc agggtcacgg tgtgcaccgg acgcacgaag tgcacgtcgc ttgcgcccca
     1741 acgcatcagt ttcgggatcg gcagtttcgc cagagaagtc gcaaccatat tcggcagcag
     1801 tgcttcggtg ctttcgccct tcacatgggc gcgatacagc agccattcgc ctttatcggt
     1861 agtcagacgc tcagcctggt caacggtaat accgcaacca cgcgcccaac cttctgccgc
     1921 tttgctcggt ttgccttcag cgtcgaacgc ctgggcaatc gccgggccgc gtttttcgat
     1981 ttcacgatcc ggttgcgctt ccgccaggtt agctactttc agcgccagac gacgcggagc
     2041 agcaaaccat tgaacggtgc cgtgtgcgag gccagcgtta tccagctcca cagtaaaatt
     2101 cgcagcaaag gactcaacca ggctgcgcag tgcttttggt ggcagctctt cagtgccgat
     2161 ttccaccaga aaagttttct cagacatagc cgcctcttac ttatctttgt tgcacatcgg
     2221 gaagccgagg gcttcacggg aagcgtagta tgcttctgcc actgctttgg tcagggtgcg
     2281 aatgcgcaga atgtagcgct gacgctcggt gacggagatg gctttacgcg catccagcag
     2341 gttgaagctg tgggcggctt tcagaatacg ctcgtaggct ggcagcggca gcggattttc
     2401 cagcgccagc agctgctgcg cttctttctc gtactgctca aagcaggtga acaggaagtc
     2461 cacatccgcg tattcgaagt tgtaagtgga ctgctccact tcgttctgat ggaacacgtc
     2521 gccgtaggtg gttttaccca gcgggccgtc gctccagacc aggtcgtaaa cgctgtctac
     2581 gccctgaatg tacatggcca gacgttccag accgtaggtg atctcgccgg taaccggttt
     2641 acactccaga ccaccaacct gctggaagta agtgaactgc gtcacttcca tgccgtttag
     2701 ccacacttcc cagcccagtc cccaggcacc cagagtcggg ttttcccagt tatcttccac
     2761 gaaacggatg tcgtgaatag tcgggtccat gcccagctct ttcagagaac cgaggtacag
     2821 ctcctgaata ttgtccggcg atggcttaat gaccacctgg aactgatagt agtgctgtaa
     2881 acggttgggg ttttcgccgt agcgaccatc ggtcgggcga cgagaaggct gaacataagc
     2941 agccgccatc ggttctggcc ccagcgcgcg cagacaggtc attgggtgag aggttcccgc
     3001 gccgacttcc atgtccaatg gttgaacaat ggtgcagccc tggcgagccc agtaatcctg
     3061 taaggtcagg atcaagccct ggaaggtcct ggtatcaaac ttttgcatat tatttcgtgc
     3121 tggatacgtg tggatttaaa ggaagggatc agtatacccg ctggatggaa gatatacagt
     3181 acgaaacggg aaaaagcagg gcttaacgca tggaaagatg caaaaaatgg ccatctgcgt
     3241 caaaagaaca gacaaactgc tctttacgga aggtataacc gcgcatttca tagcttccct
     3301 ggaactgttc gaaggcggtg acgtcgattt tttgctcgcc ggtgttataa cgttttgccg
     3361 cctgatcctt gcataacgct tccatattca acgaacgcag aggatcaacc tttacccgtt
     3421 gtgctttctg cacgggtgac ggtgtagaac aacccactag caccataagc gccattgccg
     3481 gaaagaaagc gttcatcatc attaaattac cgtctggttt gcaggtgagt cttattattt
     3541 atatcggtat agtggctgat atcttacgaa tttccttaag cctctataag ctgtagtgat
     3601 aaaactcaga ttattccagt gcgccaacca aatgatttat cggtcagact ttttttaacc
     3661 agatacagag acacagatgc aggtaatgct gccaacttac tgatttagtg tatgatggtg
     3721 attttaag
//
LOCUS       DADMJB010000246         3724 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.249, whole genome shotgun sequence.
ACCESSION   DADMJB010000246 DADMJB010000000
VERSION     DADMJB010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3724
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.249"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            37..264
                     /locus_tag="JN078_003997"
     CDS             37..264
                     /locus_tag="JN078_003997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HAY9043006.1"
                     /translation="MRLIVVSIMVTLLSGCGSIISRTIPGQGHGNQYYPGVQWDVRDS
                     AWRYVTILDLPFSLVFDTLLLPIDIHHGPYE"
     gene            complement(265..639)
                     /locus_tag="JN078_003998"
     CDS             complement(265..639)
                     /locus_tag="JN078_003998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309456.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acidic protein MsyB"
                     /protein_id="HAY9043007.1"
                     /translation="MTMYATLEEAIDAAREEFLADNPGIDAEDANVQQFNAQKYVLQD
                     GDIMWQVEFFADEGEEGECLPMLSGEAAQSVFDGDYDEIEIRQEWQEENTLHEWDEGE
                     FQLEPPLDTEEGRAAADEWDER"
     gene            complement(722..1946)
                     /gene="mdtG"
                     /locus_tag="JN078_003999"
                     /pseudo
     CDS             complement(722..1946)
                     /gene="mdtG"
                     /locus_tag="JN078_003999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415571.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtG"
     gene            complement(2118..3038)
                     /locus_tag="JN078_004000"
     CDS             complement(2118..3038)
                     /locus_tag="JN078_004000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LpxL/LpxP family Kdo(2)-lipid IV(A)
                     lauroyl/palmitoleoyl acyltransferasee"
                     /protein_id="HAY9043008.1"
                     /translation="MTNLPKFSTALLHPRYWLTWLGIGVLWLVVQLPYPVIYRLGCGL
                     GKLALRFMKRRAKIVHRNLELCFPEMSEQERRKMVVKNFESVGMGLMETGMAWFWPDR
                     RIARWTEVIGMEHIRDVQAQKRGILLVGIHFLTLELGARQFGMQEPGIGVYRPNDNPL
                     IDWLQTWGRLRSNKSMLDRKDLKGMIKALKKGEVVWYAPDHDYGPRSSVFVPLFAVEQ
                     AATTTGTWMLARMSGACLVPFVPRRKPDGKGYQLIMLPPECSPPLDDAETTAAWMNKV
                     VEKCIMMAPEQYMWLHRRFKTRPEGVPSRY"
     gene            3263..3724
                     /locus_tag="JN078_004001"
                     /pseudo
     CDS             3263..3724
                     /locus_tag="JN078_004001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415573.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
BASE COUNT          915 a          952 c          945 g          912 t
ORIGIN      
        1 cgttatgccg gtattttttt acggaagagg tatcaaatgc gtttaattgt ggtgagcatc
       61 atggtgacct tgctgagtgg ctgtggcagc attattagtc gcactatacc ggggcagggg
      121 catggcaacc aatattatcc cggtgtgcaa tgggatgtgc gtgactccgc ctggcgttat
      181 gtcacaatcc ttgatctgcc attctccctg gtttttgata ctttactgct gccgatcgac
      241 attcatcatg gcccgtatga gtgattaacg ttcatcccac tcatcagctg ctgcgcgtcc
      301 ttcctcggta tccagcggtg gctcaagctg aaattccccc tcgtcccatt catgtaatgt
      361 attctcttcc tgccactcct ggcgtatctc tatctcatca tagtcgccat caaaaacact
      421 ttgcgcggct tcaccgctaa gcataggtaa acattcacct tcttcccctt cgtcggcaaa
      481 aaactcaact tgccacatga tgtcgccgtc ctgcaaaacg tatttttggg cattgaactg
      541 ttgcacattc gcatcttcgg cgtcgatgcc ggggttgtct gcaagaaatt cttcgcgtgc
      601 agcgtcaatg gcttcttcaa gcgttgcgta catggtcatc acgattctcc ctttgagttg
      661 atgaggtttc agggaaaagg atagctgatt ctccgctttt gcaagtatga aaggcgaaaa
      721 atcagttcga tacctggggt attcgacgac gacgtagact gttccatgaa tagactgcgt
      781 tgaataacac tacgccagcg gtgacgagaa ataccgctct gaaaccgtag ttcgctgaaa
      841 tcgctgctcc catcaatggt ccggtaacgt tgccaatatc acgaaacgat tggttatagc
      901 tgaagatacg cccggcgatc tggttgctcg agttgtaaac caacaatgtc tgtacggcgg
      961 ggagtagtgc accatcggcg gcaccgagca aaaaacgtaa aatcccaagt tgcaatggcg
     1021 tctgaacgta agacattggg atcaacagca gtacagaaaa gatcagcgct gtaatcagga
     1081 tcttttcggg tccgattcga tcgccaagtt tgccgagtcg tggtgcactt agcagagccg
     1141 ccacgcctgg caccgaggcg atcatgccac tgataaaggc gacgttactg acgttacccg
     1201 ccagttcgcg gacatacagc gtcagaatgg gggcaattga gcccgtcgcc acctggatga
     1261 ttaacgtagt gacaaacagg ctgagtacca gtttcgggtt tttaagtgat gtcaccactt
     1321 cccgcatgtg cagcatctct tttttgctga ccggctggaa tttttctctg atgcaaaaca
     1381 gggtgacgaa aaagcagagt atgagcacac tggtggtaat aaagaatacc ggacgtaagc
     1441 cgtagctatc ggcgagcagg ccgccagcca ttgggccgag caacgcacca ccaacgccgc
     1501 ctgtggagag cgtacccagc gcccagccgc ttttattacg cggtacttgt gtggcgataa
     1561 gagcattagc gttggggaca aatccgccaa gtaacccaag aagcgcccgc aggatcaaaa
     1621 actgccagat attttgtgcc agccccatca acaccatcac gatgcccatg ccgagggcag
     1681 agcgtaatag catgagtttt cggcctttac ggtcggcgag tccaccccaa aacggtgagg
     1741 cgatggccga aaataaaaat gtaatgctga agacaatacc ggaccatatt cagggcggag
     1801 tgaccggtaa cgccaagctg ctcaacgtag aggggtaaga agggcattac cagactgaag
     1861 gcggcaccgg taagaaaaca gcctagccag gcgacgatca ggtttcgttt ccagtttata
     1921 ggggtgtcat tttcacaggg tgacatagca atccgctgtt ggtgcgccag gcgcggtgaa
     1981 cataagaaga aaagataagc acactaatta tgcgcccgac ttccaggggg cgcaatccag
     2041 agagctttta tcgctaaatc agggggattt gctgtggtaa tgccggatgc cattctgaag
     2101 catccggcag gggagattta atagcgtgaa ggaacgcctt ccgggcgtgt tttaaagcga
     2161 cggtgtaacc acatatactg ctctggtgcc atcatgatgc atttttcgac cactttgttc
     2221 atccacgcgg cggtagtttc ggcatcatcc agtggcggag aacactctgg cggcagcata
     2281 atcaattgat accctttgcc atctggctta cggcgtggaa cgaagggcac cagacatgcg
     2341 ccggacatcc gtgccagcat ccaggttccg gtcgtggtcg cagcctgctc aacggcaaat
     2401 aacgggacga aaacgcttga gcgcgggccg taatcatgat ccggtgcgta ccagaccact
     2461 tcgccttttt tcagggcttt aatcatgcct tttaaatctt tgcggtcgag catcgattta
     2521 tttgagcgca aacggcccca ggtttgtagc cagtcaatca gtggattatc gttcgggcgg
     2581 taaacgccaa tccccggttc ctgcatacca aactgccgcg cacccagctc cagtgtcaga
     2641 aaatggatgc caactaacag gatgccgcgt ttttgcgcct gcacgtcacg aatgtgttcc
     2701 atgccgatca cttccgtcca gcgcgcgatt cggcggtccg gccagaacca cgccatgccg
     2761 gtttccatca ggcccatgcc aacggattcg aaattcttca ccaccatttt acggcgttct
     2821 tgttcgctca tttccgggaa gcacagttcc aggttgcgat gcacaatttt tgcgcgtcgt
     2881 ttcataaaac gtaacgccag ttttcctaat ccacaaccga ggcggtagat aaccgggtag
     2941 ggcaattgca cgactaacca aagtacgcca atacccaacc aggttaacca ataacgcgga
     3001 tgaagcagtg cggtggagaa cttgggtaga ttcgtcatat caatcctgtt tttcaaccta
     3061 ttcgggcaat tgtatgtatt gtcgcatttt ttcgcccgca accaaaattt gtggctgaag
     3121 actgggcgaa attgccgcgc ttgtaaataa caaataattt ttaatgcgca aatgtagcgt
     3181 aaaatgtgtg gatgttaatt atcgataatt gctatatcat gccgcggatt tttactttcc
     3241 catctcgcag gaaccgtaca ccatgccagt gttacacaac cgcatttcca acgacgcgct
     3301 aaaagccaaa atgttggctg agagcgaacc gcgaaccacc atttcgtttt acaagtattt
     3361 ccacatcgcc gatcctaagg cgacccgtga cgctttatat cagctgttta ccgcgctgaa
     3421 tgtttttggg cgagtgtatc tggcgcatga gggcattaac gcgcaaatca gcgtacctgc
     3481 gagcaatgtt gaaacatttc gcgcgcagct ctgccttcga cccggcttta gagggtttac
     3541 gcctgaatat cgcgttggat gatgacggga aatccttctg ggtactgcgc atgaaggtac
     3601 gtgatcgcat tgttgccgac ggtattgacg atcctcactt tgatgccagc aatgttggtg
     3661 agtatctgca agcggcggaa gtgaacgcca tgcttgacga tcccgatgca ctatttatcg
     3721 acat
//
LOCUS       DADMJB010000247         3685 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.250, whole genome shotgun sequence.
ACCESSION   DADMJB010000247 DADMJB010000000
VERSION     DADMJB010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3685)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3685)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3685
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.250"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(279..566)
                     /locus_tag="JN078_004002"
     CDS             complement(279..566)
                     /locus_tag="JN078_004002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043009.1"
                     /translation="MNEVVNSGVMNIASLVVSVVVLLIGLILWFFINRASSRTNEQIE
                     LLEALLDQQKRQNALLRRLCEANEPEKADKKTIESQKSVDDEDIIRLVAER"
     gene            complement(641..784)
                     /gene="mgrB"
                     /locus_tag="JN078_004003"
     CDS             complement(641..784)
                     /gene="mgrB"
                     /locus_tag="JN078_004003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoP/PhoQ regulator MgrB"
                     /protein_id="HAY9043010.1"
                     /translation="MKKFRWVVLVVVVLACLLLWAQVFNMMCDQDVQFFSGICAINQF
                     IPW"
     gene            943..1182
                     /locus_tag="JN078_004004"
     CDS             943..1182
                     /locus_tag="JN078_004004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043011.1"
                     /translation="MRFIIRTVMLIALVWIGLLLSGYGVLIGSKENAAGLGLQCTYLT
                     ARGTSTVQYLHTKSGFLGITDCPLLRKSNIVVDNG"
     gene            complement(1325..2116)
                     /gene="kdgR"
                     /locus_tag="JN078_004005"
     CDS             complement(1325..2116)
                     /gene="kdgR"
                     /locus_tag="JN078_004005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012132042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator KdgR"
                     /protein_id="HAY9043012.1"
                     /translation="MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMS
                     KSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMREISR
                     LTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDRDEV
                     KQILEGVEYKRSTERTITSTEALLPVLDQVREQGYGEDNEEQEEGLRCIAVPVFDRFG
                     VVIAGLSISFPTLRFSEERLQEYVAMLHTAARKISAQMGYHDYPF"
     gene            2293..3666
                     /locus_tag="JN078_004006"
     CDS             2293..3666
                     /locus_tag="JN078_004006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9043013.1"
                     /translation="MPKVQADGLPLPQRYGAILTIVIGISMAVLDGAIANVALPTIAT
                     DLHATPASSIWVVNAYQIAIVISLLSFSFLGDMFGYRRIYKCGLVVFLLSSLFCALSD
                     SLQMLTLARVIQGFGGAALMSVNTALIRLIYPQRFLGRGMGINSFIVAVSSAAGPTIA
                     AAILSIASWKWLFLINVPLGIIALLLAMRFLPPNGSRASKPRFDLPSAVMNALTFGLL
                     ITALSGFAQGQSLTLIAAELVVMVVVGIFFIRRQLSLPVPLLPVDLLRIPLFSLSICT
                     SVCSFCAQMLAMVSLPFYLQTVLGRSEVETGLLLTPWPLATMVMAPLAGYLIERVHAG
                     LLGALGLFIMAAGLFSLVMLPASPADINIIWPMILCGAGFGLFQSPNNHTIITSAPRE
                     RSGGASGMLGTARLLGQSSGAALVALMLNQFGDNGTHVSLMAAAILAVIAACVSGLRI
                     TQPRSRA"
BASE COUNT          924 a          904 c          815 g         1042 t
ORIGIN      
        1 taaaataaga aaaattgatg aatgagcaaa aaaatcaaga gagaaacgtt tcgctaataa
       61 ataataccac gcttaatcac aaatccgatg taaacatcct aataaattaa tgaggaaaat
      121 atctttttct gatatcccgt tacgcaaata aataatatga taattatttg aagtcagacc
      181 agagttttaa tttgaagcag ttgcaccatg acagtgcgta taatcaggat gaattgagta
      241 acccttcaac gacggggtta ctcaagattg aggaaggatt atcgttcggc gaccaggcga
      301 ataatatctt cgtcatcaac cgatttttga ctctcaatgg tctttttatc tgctttctct
      361 ggttcgtttg cttcgcacaa acgacgtaac agtgcatttt gacgtttttg ctgatccagc
      421 aacgcctcaa gcagttcaat ctgttcgtta gtccgtgaac tggcacgatt gataaaaaac
      481 cacaagatga gcccgataag aagaactacc accgatacaa ccaaagacgc aatgttcatc
      541 acgcctgaat ttacaacttc gttcatttca ccacctctga gtagaggcgc tattctacca
      601 ctgctggaga ggaagaaaat ctagtgctga aaaaatgata tcaccacggg ataaactggt
      661 taatggcaca aattccgctg aaaaattgta catcctgatc gcacatcatg ttgaatacct
      721 gcgcccaaag cagcaagcaa gccaacacca cgacaaccag aacgacccat cgaaactttt
      781 tcactccaat ctccgcttca cctaccttat gtcattaaac tagcatgcgt tagttaaaca
      841 gcgcctaact atgtcgatat tcgtgctttt tcggaatgag tagcttgctt cagcgcatat
      901 tgccgctacg attaagcgaa cataaaaaga gaagaggttg taatgcgatt catcattcgc
      961 acagttatgc tgatagcact ggtatggata ggattattac tcagcggata tggcgttttg
     1021 attggaagca aagagaatgc cgcaggatta ggtttgcaat gtacctatct gactgccaga
     1081 ggcaccagca cggtacaata cttgcacact aaaagtggtt tcttggggat aacagattgc
     1141 ccactgttac gtaaaagcaa tatcgtggtc gataatggtt aagggtaata aataaccaga
     1201 ttctcactca tgagtaaaat attcttatag caagcgcgtt taatataacg caccttcaac
     1261 tttatttttc tcatgctaaa taaagaacct gtctgtttga tattccgaca ggttcttact
     1321 ctcatcagaa cggatagtcg tgataaccca tttgggcaga aattttgcgc gctgcggtat
     1381 gcaacattgc gacatattcc tgtaaacgct cttcagagaa acgcaacgtc gggaaggaga
     1441 tgctcaaacc ggcaatgacc acgccaaagc gatcaaatac cggtaccgca atgcatcgca
     1501 gcccttcttc ctgctcttcg ttatcttcgc catacccctg ctcgcgcacc tggtccagaa
     1561 cgggtaataa cgcttctgta ctggtgatgg tccgctcggt actgcgttta tactccacgc
     1621 cctcaagaat ttgcttcact tcatcgcgat cgcgccatgc cagcagtacc ttaccaatcg
     1681 cggtgctgta cagcggatta cgacgcccaa tccgtgaata catgcgcaaa ttgtacatag
     1741 agtcaatttt gtgaatgtaa acaatactgt cttcgtccag tgcgccgagg tggatagttt
     1801 ctttggtcag gcgggagatc tcacgcatct ggatatctgc gctacgaatt aaatcgacgt
     1861 tttgtaacgc gcgagcgccc agttcaaaca atttcagggt cagggaatat ttctccgact
     1921 ccccttcctg cgccacataa cctaaggttt tcatggtctg taaaaagcga taaacggtgc
     1981 tttttgacat catgacgcgc tgcgacagct cggttatccc tatttcgcgc tcttcaccca
     2041 gcgcctgcaa aatgccaaaa acttttagca cggaagatac agaatcaggc tgtttatcca
     2101 gatctgcgtt agccatttat cacctcattg cgagtgtttt ataaaaatca gaactgtttt
     2161 ttattataat ttcgcaccag gggggtcgca atccatcttt tgccggttag ttacaattct
     2221 gcgacatcca ccgtgaatat cagtgctaga atcatacccc tgttgattat tcaccaaaga
     2281 tataaaattc ctatgccaaa agttcaggcc gacggcctgc cattgcccca gcgatacggt
     2341 gcgatattaa ccattgtgat tggtatttcg atggctgtcc ttgacggcgc aatcgccaac
     2401 gtcgccctgc caacaatcgc cacggacctt catgccacgc cagccagttc catctgggta
     2461 gtgaacgcct atcaaatcgc cattgtcatc tccctgctct cgttttcgtt tctgggcgat
     2521 atgtttggct atcgacgtat ttataaatgc ggtctggtcg tttttctgtt gtcttcactg
     2581 ttctgcgccc tttctgattc gctgcaaatg ctcacccttg cgcgtgtcat acaaggtttc
     2641 ggcggtgcag cgttgatgag cgttaatacc gcacttatcc gcctgatcta tccacaacgt
     2701 tttctgggga gagggatggg cataaactcg tttattgttg ccgtctcttc tgctgccggg
     2761 ccgacaattg ctgcagcaat cctctccatc gcatcctgga aatggttatt tttaatcaac
     2821 gtaccgttag gtattatcgc cctgcttctg gcgatgcgtt ttctgccacc caatggttct
     2881 cgcgccagta aaccccgttt cgacctgccc agcgccgtga tgaacgcgtt aaccttcggc
     2941 ctgcttatca ctgcgttgag tggtttcgct caggggcaat cgctgacgtt aattgctgcg
     3001 gaactggtgg taatggttgt tgttggtatt ttctttattc gccgccagct ttctcttccc
     3061 gtaccgctgc taccggtgga tttactgcgt atcccgctgt tttcactttc tatttgcaca
     3121 tctgtttgct ctttctgcgc acaaatgctg gcaatggttt ccctgccctt ttacctgcaa
     3181 accgtgctcg ggcgtagtga agtcgaaaca ggtttacttc tgacaccgtg gccgttagca
     3241 acgatggtga tggctccgtt ggcaggctat ttgattgaac gcgtacatgc aggattgctg
     3301 ggtgctctag ggttgttcat catggctgcg gggctttttt ccctggttat gctgcccgcg
     3361 tcacctgcgg atatcaatat tatctggccg atgatcttat gtggcgctgg atttggcttg
     3421 ttccagtcac ccaataacca caccattatt acctccgctc ctcgcgaacg tagcggtgga
     3481 gccagtggca tgttaggaac ggctcgtcta ctgggtcaga gtagcggcgc ggcactggtg
     3541 gcgctgatgc taaatcagtt cggtgataat ggtacgcacg tttcgctgat ggctgcggct
     3601 attctggcag tgattgctgc ctgtgtcagt ggtttacgta tcactcagcc acgatccagg
     3661 gcataaaaaa agcgcgtcga tcagg
//
LOCUS       DADMJB010000248         3679 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.251, whole genome shotgun sequence.
ACCESSION   DADMJB010000248 DADMJB010000000
VERSION     DADMJB010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3679
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.251"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(168..482)
                     /gene="fliE"
                     /locus_tag="JN078_004007"
     CDS             complement(168..482)
                     /gene="fliE"
                     /locus_tag="JN078_004007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HAY9043014.1"
                     /translation="MSAIQGIEGVISQLQATAMSARAQDSLPQPTISFAGQLHAALDR
                     ISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSM
                     QV"
     gene            697..2355
                     /gene="fliF"
                     /locus_tag="JN078_004008"
     CDS             697..2355
                     /gene="fliF"
                     /locus_tag="JN078_004008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body M-ring protein FliF"
                     /protein_id="HAY9043015.1"
                     /translation="MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAK
                     APDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGL
                     PKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS
                     LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLT
                     LSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTE
                     EQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNN
                     RQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK
                     PLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSSDESGGELPFWQQQAFIDQ
                     LLAAGRWLLVLLVAWLLWRKAVRPQLTSRAEAMKAVQQQAQAREEVEDAVEVRLSKDE
                     QLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWINNDHE"
     gene            2348..3343
                     /gene="fliG"
                     /locus_tag="JN078_004009"
     CDS             2348..3343
                     /gene="fliG"
                     /locus_tag="JN078_004009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HAY9043016.1"
                     /translation="MSNLTGTDKSVILLMTIGEDRAAEVFKHLSQREVQTLSAAMANV
                     TQISNKQLTDVLAEFEQEAEQFAALNINANDYLRSVLVKALGEERAASLLEDILETRD
                     TASGIETLNFMEPQSAADLIRDEHPQIIATILVHLKRAQAADILALFDERLRHDVMLR
                     IATFGGVQPAALAELTEVLNGLLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAV
                     REFDGELAQKIIDEMFLFENLVDVDDRSIQRLLQEVDSESLLIALKGAEQPLREKFLR
                     NMSQRAADILRDDLANRGPVRLSQVENEQKAILLIVRRLAETGEMVIGSGEDTYV"
     gene            3336..>3679
                     /locus_tag="JN078_004010"
     CDS             3336..>3679
                     /locus_tag="JN078_004010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416450.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HAY9043017.1"
                     /translation="MSDNLPWKTWTPDDLAPPQAEFVPMVEPEETIIEEAEPSLEQQL
                     AQLQMQAHEQGYQAGIAEGRQQGHEQGYQEGLAQGLEQGLAKAKSQQAPIHARMQQLV
                     SEFQTTLDALDSV"
BASE COUNT          925 a          967 c         1029 g          758 t
ORIGIN      
        1 cttcctatga gcaaagcgaa gacaaaacat gttatcgcgt ttacggatcg tggatggcag
       61 aaaactttca ggatcaggta tccattttaa accagaaata gggtgagttt gtcccatcca
      121 tgccccacgc gggcagatgg gatgtaatta ccaacaggtt acaaaaccta cacctgcatg
      181 gacatcactt cctgatacgc cgccaccagc ttattacgca cctgaatccc catttgcata
      241 gaaactgagg ctttttgcat atcggtcatc acatcgttta acgccacgcc gggttcaccg
      301 agggtgaatt tttctgcctg cgtgcgggcg gctgtttgtg tatcgcttat gcgatcgagc
      361 gcggcgtgca gctgcccggc aaaactaatg gtcggttgcg gcagtgaatc ctgcgcacgc
      421 gcactcatcg ccgtagcctg taactggctg ataacccctt caatcccctg tatcgctgac
      481 attttcgtct cctggataat ttctggtagc aaagcctacc agtaagtcaa taagacaaag
      541 gcgctaaata gcaacaaaaa aacgggttta ttggcggata gaaaaaaacg aaagcacaaa
      601 taatggcagc gtcaattttt cgagtttgct gacccgggag tgagtcttgt tccactttgc
      661 caataacgcc gtccataatc agccacgagg tgcgcgatga atgcgactgc agcccagaca
      721 aaatctcttg agtggcttaa tcgcctgcgt gcgaatccga aaattccatt gattgttgcc
      781 ggttccgcgg cagtggcggt catggtcgca ctgatcctgt gggcgaaagc ccccgactac
      841 cgcacattat tcagcaatct ttccgatcag gatggtggcg caattgtcag ccaactgacg
      901 caaatgaata ttccttaccg cttcagcgaa gccagcggcg ctattgaagt tccggcagat
      961 aaagttcacg agctgcgtct gcgcctggcg caacaaggtt tgcccaaagg cggcgcggtc
     1021 ggtttcgaac tactcgatca ggaaaagttt ggtatcagcc agttcagcga acaggtgaat
     1081 tatcagcggg cgctggaagg cgagctttct cgtaccatcg aaactatcgg cccggtaaaa
     1141 ggggcgcgcg tacatctggc aatgccgaaa ccgtctttat tcgtccgtga acaaaaatcc
     1201 ccttctgcat cggtgacggt aaatctatta cccggccgcg cactcgatga agggcaaatt
     1261 agcgccattg tacatctggt ttccagcgcg gttgctggtc tgccgccggg gaacgtcacg
     1321 ctggtggatc agggtggaca tctgttaacc ctgtccaata ccagcgggcg cgatcttaat
     1381 gacgctcagt tgaaatatgc cagcgatgtc gaaggccgga ttcagcggcg tattgaagcg
     1441 atcctgtcgc caattgttgg taacggtaat attcacgccc aggtcacggc gcaactggac
     1501 ttcgccagta aagaacaaac ggaagaacag tatcgcccta acggtgatga atctcatgcg
     1561 gcgcttcgtt cacgccagct taatgagagc gagcaaagcg gttccggtta tccgggcggc
     1621 gtaccggggg cgttgtcgaa tcaaccggca cctgcgaata acgcgccaat cagcacgcct
     1681 ccggcaaatc aaaataaccg ccagcagcag gcgagcacca ccagcaatag cgggccgcgt
     1741 agcacacagc ggaatgaaac cagtaactac gaagtcgatc gcaccattcg tcataccaaa
     1801 atgaacgtgg gcgatgtgca acgtctgtca gtcgcggtag tggtaaatta caaaaccttg
     1861 ccagacggta aaccattgcc tctcagcaac gaacagatga agcaaattga agatctgacc
     1921 cgcgaggcga tgggcttttc tgaaaaacgc ggtgactcgc tcaatgtcgt taactcgccg
     1981 ttcaatagca gtgacgaaag cggcggagaa ctgccgttct ggcaacagca agcgtttatc
     2041 gatcagttgc tggctgccgg tcgctggttg ctggtactgc tggtggcgtg gctgctgtgg
     2101 cggaaagcgg tacgcccgca gttaacaagt cgcgccgagg cgatgaaagc tgtacagcaa
     2161 caggcgcagg cccgtgagga agtggaagat gcggtggaag tccgcctgag caaagacgaa
     2221 caactccaac aacgacgcgc taaccaacgt ctgggggcag aagtcatgag ccagcgtatc
     2281 cgtgaaatgt ctgataacga tccgcgcgtg gtggcgctgg tcattcgcca gtggataaat
     2341 aacgatcatg agtaacctga caggcaccga taaaagcgtc atcctgctga tgaccattgg
     2401 cgaagaccgg gcggcagagg tgttcaagca cctctcccag cgcgaagtgc aaaccctgag
     2461 cgctgcaatg gcgaacgtca cgcagatctc caacaagcag ctaaccgatg tgctggcgga
     2521 gtttgagcaa gaagctgaac agtttgccgc actgaatatc aacgccaacg attatctgcg
     2581 ttcggtattg gtcaaagctc tgggtgagga acgtgccgcc agcctgctgg aagatattct
     2641 cgaaactcgc gataccgcca gcggtattga aacgctcaac tttatggagc cgcagagtgc
     2701 cgccgatctg attcgcgatg agcatccgca aattatcgcc accattctgg tgcatctgaa
     2761 gcgcgcccag gccgccgata ttctggcgtt gttcgatgaa cgtctgcgcc acgacgtgat
     2821 gttgcgtatc gccacctttg gcggcgtgca gccagccgcg ctggcggaac tgaccgaagt
     2881 actgaatggc ttgctcgacg gtcagaatct caagcgcagc aaaatgggcg gcgtgagaac
     2941 ggcagccgaa attatcaacc tgatgaaaac tcagcaggaa gaagccgtta ttaccgccgt
     3001 gcgcgaattc gacggcgagc tggcgcaaaa aattatcgac gagatgttcc tgttcgaaaa
     3061 tctggtggat gtcgacgatc gcagcattca gcgtctgttg caggaagtgg attccgaatc
     3121 gctgttgatc gcgctgaaag gggccgagca gccactgcgc gagaaattcc tgcgcaatat
     3181 gtcgcagcgt gccgccgata ttctgcgcga cgatctcgcc aaccgtggtc cggtgcgtct
     3241 gtcgcaggtg gaaaacgaac agaaagcgat tctgctgatt gtgcgccgcc ttgccgaaac
     3301 tggcgagatg gtaattggca gcggcgagga tacctatgtc tgataatctg ccgtggaaaa
     3361 cctggacgcc ggacgatctc gcgccaccac aggcagagtt tgtgcccatg gtcgagccgg
     3421 aagaaaccat cattgaagag gccgaaccca gccttgagca gcaactggcg caactgcaaa
     3481 tgcaggccca tgagcaaggt tatcaggcgg ggattgccga aggtcgccag caaggtcatg
     3541 agcagggcta tcaggaagga ctggcccagg ggctggagca aggtctggca aaggcgaagt
     3601 ctcaacaagc gccaattcat gcccggatgc agcaactggt cagcgaattt caaactaccc
     3661 ttgatgcgct tgatagtgt
//
LOCUS       DADMJB010000249         3637 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.252, whole genome shotgun sequence.
ACCESSION   DADMJB010000249 DADMJB010000000
VERSION     DADMJB010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3637
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.252"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(623..2332)
                     /locus_tag="JN078_004011"
     CDS             complement(623..2332)
                     /locus_tag="JN078_004011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858142.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShET2/EspL2 family type III secretion system
                     effector toxin"
                     /protein_id="HAY9043018.1"
                     /translation="MPLNKTFSSSIFSTKNSLSTDMSVNRDNRTITSSIMRVSNSSEL
                     IQFKNKTAPYFSEKRNVKVNINGVAKDIYGRQIVCRHLASYWEMNFMETNGKVNYQLL
                     STPDAIAKNVCLEKTEDFSKSPAYIYFVENKKWGTVITNFFYNMKKNGDFVRTLSACT
                     LNHQMALGLKIKRVQESEKWVVQFFDPNRTVTHKRTVFTCDSHFELSQLSAKDFFDDF
                     YWKIYGLEQPGQVIFEDRHNSPLTNTVKLLPDELINSRVIYHAITKNLTEVLFILMEK
                     YKNGEISQSKLVNLLATRSSDGTPAFYIALQNGCSDIIQVYGKILNMCNLSQETILTL
                     LAAVGANNVPGLCMSFMNGHVDTIKAYGEIVFKTPLTSDKRLYLLAAKDSHDLPGLFF
                     ALQNGHADSIRMFGSLLNKKMLSSEQIKELLKVKHGLFMALQNGHTKAIMAYGDILKI
                     LPPHQEYIDELLWIKNPNGTSGLFMAFYNGHTETIRAFCNILKNYSFTTRRLVEMLSA
                     TNKDGIPGVFVSVVNRDKETILEYCRIIKENNLEPDTIAEQFSKKMKKTFIEIINRFN
                     HFL"
     gene            complement(2764..3483)
                     /locus_tag="JN078_004012"
     CDS             complement(2764..3483)
                     /locus_tag="JN078_004012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector
                     phosphothreonine lyase"
                     /protein_id="HAY9043019.1"
                     /translation="MPIKKPCLKLNLDSLNVVRSEIPQMLSANERLKNNFNILYNQIR
                     QYPAYYFKVASNVPTYSDICQFFSVMYQGFQIVNHSGDVFIHACRENPQSKGDFVGDK
                     FHISIAREQVPLAFQILSGLLFSEDSPIDKWKITDMNRVSQQSRVGIGAQFTLYVKSD
                     QECSQYSALLLHKIRQFIMCLESNLLRSKIAPGEYPASDVRPEDWKYVSYRNELRSDR
                     DGSERQEQMLREEPFYRLMIE"
BASE COUNT         1078 a          731 c          652 g         1176 t
ORIGIN      
        1 aagcttgata caactggtct ggtatataca gtttctttga gtgcggttac gtccacagag
       61 gtaacggtaa aagtaacccc ttgtcgggac cactccgacc gcgcacagag gcattttcat
      121 cgctgacagg ccgcattgcc tcgcagggct ggaggaggat cggtgatatc cggacgaccg
      181 taccggctta cgccgggctt cggcggtttt actcctctgc catgtgcaac aacggagtgc
      241 cgccttacat gccgctggcg cggcatatcc tggtaacatt tttgttgata ccaccttccg
      301 gccttatcct gaccagtggg ctttcctggc atcgatgata ccgatgaacg cgcatgatat
      361 tgagccgacg atattacggg caactggaaa tactcaccct ctggatgtga cctttatcca
      421 tgaagaagat ttggccatac catggaaacc tgaacaatca tcagtttacg cccatgtaaa
      481 cccctacggg atatttgaac tcgatatgga aacaaggttg ccaatcgagg tggttgcctg
      541 aaagttggca gttacccggt cactacacct tgttggagtg aacatatcaa aaacaggtag
      601 ttacacaatt taaattacag tctcataaaa aatgattaaa tctatttatt atttcaataa
      661 acgttttttt catcttcttt gaaaattgtt ctgctatagt atccggttcc agattgttct
      721 cttttattat tctacaatac tctaatattg tttctttgtc tctatttact acagatacaa
      781 atacaccagg aataccatct ttattagttg cggacagcat ttcgaccaat cgtcttgtgg
      841 taaaactata gttttttaga atattacaaa aggcacgtat tgtttcggta tggccattat
      901 aaaatgccat aaaaagtcct gatgtaccgt tgggattttt tatccataat aattcatcta
      961 tatattcctg gtgagggggg agtattttta gtatatctcc atacgccata atggcctttg
     1021 tgtgcccatt ttgaagtgcc ataaacaacc catgctttac tttcaataat tctttaattt
     1081 gttcactact aagcattttc ttattaagca gacttccgaa catacgaata ctatctgcat
     1141 gtccattctg caatgcaaaa aataacccag gtaaatcatg gctgtctttc gcagctaata
     1201 gatataatct cttatcggaa gttaacgggg ttttaaagac tatttcccca taggctttta
     1261 ttgtgtctac atgtccgttc ataaaagaca tgcataaacc cggcacattg tttgccccta
     1321 ccgcagcaag caatgtaagt attgtttctt gactaagatt gcacatattt aatatcttac
     1381 catatacttg aataatgtct gaacatccgt tttgaagtgc tatataaaat gcaggagtac
     1441 catcagagct tctcgtggcc agaaggttca ccagtttaga ttgagaaatt tcaccatttt
     1501 tgtatttttc catcagtata aataatactt ctgtcagatt ctttgttatc gcatgatata
     1561 taactctgga attgatcaat tcatctggta aaagtttcac tgtgtttgtt agaggggaat
     1621 tatgcctatc ttcaaatatt acctgcccgg gttgctccag accataaatt ttccaataaa
     1681 aatcatcaaa aaaatcctta gcggataatt gactcagttc gaaatggcta tcacaagtaa
     1741 atacagtacg tttatgagta acagttcgat taggatcgaa aaactgaaca acccattttt
     1801 cactttcttg tacgcgcttt attttcaacc ctaacgccat ttggtggttt aatgtgcatg
     1861 ctgataatgt tctgacaaag tctccatttt ttttcatgtt ataaaaaaaa ttagtaataa
     1921 ctgttcccca ctttttattt tccacaaaat aaatataagc tggtgatttt gaaaaatctt
     1981 ccgttttttc caaacataca ttttttgcaa tagcatcagg ggtgctaaga agctgatagt
     2041 ttaccttccc atttgtttcc ataaaattca tttcccaata ggaagctagg tgacggcaaa
     2101 ctatttgtct tccatatata tcttttgcca ctccatttat atttaccttc acatttctct
     2161 tttctgaaaa ataaggtgct gttttattct taaactgaat tagttcactg gagtttgaga
     2221 ccctcataat agaacttgtt attgttctat tatctctgtt aacagacata tctgttgata
     2281 acgaattttt tgttgaaaat atactagatg aaaatgtttt atttaacggc atagaagaca
     2341 accatagaga tgttataata ctattagatt gcagttacta atagtaaaag cctccttaca
     2401 aggaggtagc ttattcagaa tgctcctata agatagcgag ctcgtcaacg atacagatga
     2461 tctgattata ttgtgcaaaa ggagaacagg aaaataggca ctggaaaaga tgaaggcctg
     2521 atgggagcat taactaatgc aaaatccgac aggttaatat cccgaaaagc aatcaaacga
     2581 ctcaaacagg agatgcacgc tgaagtggtg gacaactgtt cggatttcag atgagtagct
     2641 cagcagttta tgagccgaat gctctgtcac ggtcaggaat caggctgcat acgctgtgcc
     2701 aaatctaatc gtagttattc taaccagttt tccagctaca aggtggtgta gctggcatct
     2761 tctctactct atcatcaaac gataaaatgg ttcctctcgt aacatttgct cttgcctttc
     2821 acttccatct cgatcgcttc gtagttcatt acgatagctg acatatttcc agtcttcagg
     2881 tctaacatct gacgccggat actccccggg agcgattttg cttcttaata gattagactc
     2941 gagacacatt ataaattgtc gtattttatg aagtaataaa gcactatatt gcgagcattc
     3001 ctgatctgat tttacatata gcgtaaactg agctcctatc cccacacgag attgctgaga
     3061 aactcgattc atatcagtta tcttccattt atctatagga ctgtcctctg aaaataataa
     3121 accagacaaa atttggaatg ccagaggaac ttgctcccta gctatactaa tatgaaactt
     3181 gtccccaaca aaatccccct tactctgagg attttcacga catgcatgaa taaacacatc
     3241 tccactatgg ttcacaatct ggaatccttg gtacatgaca gaaaaaaatt gacatatatc
     3301 agagtaagtt ggcacgttcg atgctacttt gaaatagtac gctgggtatt gccgtatttg
     3361 gttgtacaat atattgaagt tatttttcaa tctttcattc gcagaaagca tctgcggtat
     3421 ttcagacctc acaacattca aagaatctaa atttagtttt agacagggct tttttatggg
     3481 catagaaaac gtcctctata aaatagatat attatcttat attgattgtt tatcatcttt
     3541 tataaaacga tacattatat gtaatgtatg taagcgtaag ggtcttctcc gatcatggtg
     3601 ggaaggctta gaacgccata ttcagtttcc catagtg
//
LOCUS       DADMJB010000250         3540 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.253, whole genome shotgun sequence.
ACCESSION   DADMJB010000250 DADMJB010000000
VERSION     DADMJB010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3540
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.253"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            232..543
                     /locus_tag="JN078_004013"
     CDS             232..543
                     /locus_tag="JN078_004013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000483533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HAY9043020.1"
                     /translation="MFNVITHPAALDELLELPDNLRGRMTRLIERLEQEGNKMKMPHS
                     RVIGGGLFELRVGDKNIARTLYAYATGNEIYLLHAFVKKTQKTPTKAIEIARMRLKEM
                     N"
     gene            543..830
                     /locus_tag="JN078_004014"
     CDS             543..830
                     /locus_tag="JN078_004014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000865085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAY9043021.1"
                     /translation="MKVKGVPFSQVKQKLLSTPEAVKGYEDADKELEMVEMLYEMREK
                     AGLTKSALAERMGLRPSAISRLESNPLGASMKTLTKYAHACGATIDIHAVY"
     gene            complement(1367..2554)
                     /locus_tag="JN078_004015"
     CDS             complement(1367..2554)
                     /locus_tag="JN078_004015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013747467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
                     /protein_id="HAY9043022.1"
                     /translation="MLPRFADIFQQGNRWLNWLEKQPEGAVRPVVIESVTKIMACGTT
                     LMGYTQWCCSSPDCCHTKKVCFRCKSRSCPHCGVKAGAQWIQYLLSLVPDCPWQHIVF
                     TLPCQYWSLVFHNRWLLAEMSRIAADVILEICHQADVEPRIFTVIHTWGRDQQWHPHI
                     HLSTTAGGVTSGHTWKNLHFYARKVMSMWRYRITRLLSRKYPDLVMPDALAAEGSSKR
                     EWNRFLDTHYRRGWNVNVSRVMDNATHVAVYFGSYLKKPPVPVSRLEHYAGQDEIGLR
                     YNSHRTKREEYLLMSGDEFMERFSWHVADKGFRMVRYYGFLSPAKRRLLEEVVYIITE
                     TVRKTAMQITWRGMYQRLLKVDPLKCVLCGSQMRFTGLKRGYRLAEQVLMHEPLARMR
                     WCG"
     gene            complement(2554..2919)
                     /locus_tag="JN078_004016"
     CDS             complement(2554..2919)
                     /locus_tag="JN078_004016"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043023.1"
                     /translation="MARSAKPRKRKPASQRSKLPRYVVKLHEDDFFDEEDAEVLRFDS
                     FDDAVECCADLNIPFFVDAGNKKLVFWFVRVDDEGYPEIARCTEREFATILSGISAGG
                     MYCPECGTVHWPDGVAPPF"
     gene            2938..3333
                     /locus_tag="JN078_004017"
     CDS             2938..3333
                     /locus_tag="JN078_004017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858230.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY9043024.1"
                     /translation="MTLPVFITVIADHDKPQPSGCLLELQLNKGEYRHKLPRWIFFAN
                     QGEFTTGDYEEIMNKASALSLVSNAILYWNTSRISNIVEGLRENGEVIDDDVLAHISL
                     LPYKHVLPNGTYFVDGEPYGTEPTERAKP"
     gene            3363..3446
                     /locus_tag="JN078_004018"
                     /pseudo
     CDS             3363..3446
                     /locus_tag="JN078_004018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052676.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
     gene            3446..>3540
                     /locus_tag="JN078_004019"
     CDS             3446..>3540
                     /locus_tag="JN078_004019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HAY9043025.1"
                     /translation="MEQKWTSKALSDLARLYDFLVLASKPAAARMV"
BASE COUNT          926 a          919 c          835 g          860 t
ORIGIN      
        1 aaggtgaaat ctgtcaatca gtaccggctt acgccgggct tcggcggttt tactcctgtg
       61 ccatatgcaa caacggagtg ccgccttcca tgccgctaac gcggcatcaa aaaatccctc
      121 ttctccagtt gcccccctcc gaactcagag tgtattttca tttattgatg aaatttactg
      181 tttgcgcaat tttcctgttt tagtgtattt tgtcattctg gaggctataa tatgtttaat
      241 gtgattactc acccggccgc actggatgaa cttctagaat taccagacaa tctgcgtggt
      301 cgtatgacca gactgattga acggctggaa caggaaggta acaaaatgaa aatgcctcac
      361 agccgtgtaa ttggcggagg gctttttgaa ctgagagtcg gggataaaaa tatcgcaagg
      421 acactgtacg cttatgcaac gggtaacgaa atctatctgc tgcatgcatt tgtgaaaaaa
      481 acgcaaaaga caccaacgaa agctattgaa attgccagga tgcgtctgaa ggagatgaac
      541 tgatgaaagt aaaaggtgtt ccattcagcc aggtaaagca aaaactactc agtactccag
      601 aagctgtcaa agggtatgag gatgctgaca aagaactgga gatggtggaa atgttatacg
      661 aaatgagaga aaaagcggga ttaacaaagt cagcactggc cgaacgaatg gggttacgcc
      721 cgtcagccat cagtcgcctg gaaagtaacc ctttaggggc cagcatgaaa actttgacaa
      781 aatatgctca tgcctgtggc gcaaccatcg atattcacgc tgtctattga ggggtccgct
      841 tggaattcgg aaaataaacc acgttaagac tattttttag ataaatgact ttcaggaatc
      901 gccaagatgg cgggataaca gcggttttgg tgtcctaaat cgtacaattc tgtacatcca
      961 cgcaagggaa tgtacggaag taagccagac ggttatcgga cggtcagaac atttcgtaca
     1021 gcctttacgt tcagtgagtt agctggcctg gacgtaacca ctcgttagct caattctctt
     1081 agcgtgggaa aatttccgaa ttccaagcgg acccctttat ccttgccccg ctgaatgagg
     1141 aaacgctgtt ccgggggatt atgctgaacg tcttccgttc atcgatagga attaaaaccc
     1201 caaaaagatt aaaaaacacc acaaaacgga tgtttcttca acaccacttt tgctcatatg
     1261 aacggaaccg acgattaaac tggatggctc tgattgattc agggtatgaa tggcggtttt
     1321 ttgctccgtt tccctcaaaa tggacgctac ttaccctctg cggctctcag ccgcaccacc
     1381 gcatccgggc cagcggctca tgcatcagga cctgctctgc cagacggtag ccccgcttca
     1441 gccccgtaaa acgcatctga ctcccgcaca gcacgcactt cagcgggtca accttcagta
     1501 acctctgata catccctctc caggtgattt gcatcgccgt ttttctcact gtctccgtta
     1561 tgatgtacac cacttcttcc agtaaccgcc gtttcgccgg actcagaaaa ccgtagtacc
     1621 tcaccatacg gaacccctta tccgccacat gccaggagaa cctttccatg aactcatctc
     1681 cactcatcaa caggtattct tcccgttttg ttcggtgact gttgtaacgc agtccgattt
     1741 catcctgacc ggcataatgc tccagacgac tcaccggcac cggtggcttt ttcaggtaag
     1801 agccaaagta caccgccaca tgggtggcat tatccatcac ccgggatacg ttgacattcc
     1861 agccacggcg gtaatgcgtg tccaggaagc gattccattc ccgtttactg cttccttctg
     1921 ctgccagcgc atccggcatc accaggtcag ggtatttccg tgacagtaac cgtgttatcc
     1981 ggtagcgcca catgctcatc accttacggg cgtaaaaatg aagatttttc caggtgtggc
     2041 ccgacgtcac accaccggca gttgtcgata aatggatatg cggatgccac tgctggtcac
     2101 gcccccatgt gtggatcacc gtgaatatcc tcggctccac atctgcctga tggcagattt
     2161 ccagtatcac atccgctgca atgcggctca tctctgccag caaccaccgg ttgtggaaca
     2221 ccagggacca gtactggcag ggtaacgtga acacaatatg ctgccatggg cagtcgggga
     2281 ccaggctcag cagatactgt atccactgtg cgccagcctt caccccgcag tgcgggcagg
     2341 agcggctttt acaccggaag cagacctttt ttgtatggca acagtccggt gatgaacagc
     2401 accactgtgt ataccccatc agtgtggtcc cgcacgccat gattttggtc accgactcaa
     2461 tcaccaccgg acgtactgcc ccttccggct gcttctccag ccagttaagc cagcggtttc
     2521 cctgctgaaa gatatcggca aaacggggaa gcatcagaag ggcggggcga ctccgtccgg
     2581 ccagtgaacc gtgccacact ccgggcagta cataccgccg gcgctgatac cggaaagaat
     2641 ggtcgcaaat tcccgctccg tgcagcgggc aatttccgga tacccttcgt catcaacacg
     2701 tacaaaccag aagaccagtt ttttgtttcc ggcatccaca aagaacggaa tattcaggtc
     2761 tgcgcaacac tcaacggcat catcaaaact atcaaagcgc agaacttctg cgtcttcttc
     2821 gtcaaaaaaa tcatcttcgt gaagcttcac gacatagcgg ggaagtttgc ttctttgaga
     2881 ggcgggttta cgtttacggg gtttagctga acgggccata taaccacctg aaagacaatg
     2941 acattgcctg tttttataac ggtaattgca gaccatgaca agccgcagcc gtcaggctgc
     3001 ctactcgagc ttcagctcaa taaaggcgaa tatcgacata aattaccccg atggatcttt
     3061 tttgcaaatc agggtgaatt cacgaccggt gattacgaag aaatcatgaa taaggccagc
     3121 gccctgagtc tggtatcgaa tgcaatcctg tactggaata catcaagaat aagcaatatt
     3181 gttgaagggt tacgtgaaaa tggtgaggtt attgatgatg acgtattagc ccatatatca
     3241 ttactgccct ataaacacgt attacctaat ggtacttatt ttgttgatgg agaaccttac
     3301 ggtactgagc ctaccgaaag agcaaaaccg taagtttctg ttcaaatgct cccgctggtc
     3361 catccggaca gattatcgac catcaggctg tacaggcctg ggcggacagc ctcagtactg
     3421 acaatccgtt accggtgcca cgctgatgga acagaagtgg accagtaagg cgctttctga
     3481 tttggcgcgg ttatatgatt ttctggtgct ggccagtaaa cctgctgccg ccagaatggt
//
LOCUS       DADMJB010000251         3528 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.254, whole genome shotgun sequence.
ACCESSION   DADMJB010000251 DADMJB010000000
VERSION     DADMJB010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3528
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.254"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(293..988)
                     /locus_tag="JN078_004020"
     CDS             complement(293..988)
                     /locus_tag="JN078_004020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414842.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HAY9043026.1"
                     /translation="MDNRGEFLNNIAQALGRPLRLEPQAEDAPLNNYANERLTQLNQQ
                     QRCDAFIQFASDVMLTRCELTSEAKAAEAAIRLCKELGDQSVVISGDTRLEELGISER
                     LQQECNAVVWDPAKGAENISQAEQAKVGVVYAEYGLTESGGVVLFSAAERGRSLSLLP
                     ESSLFILRKSTILPRVAQLAEKLHQKAQAGERMPSCINIISGPSSTADIELIKVVGVH
                     GPVKAVYLIIEDC"
     gene            complement(981..2408)
                     /locus_tag="JN078_004021"
     CDS             complement(981..2408)
                     /locus_tag="JN078_004021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HAY9043027.1"
                     /translation="MSIKTSNTDFKTRIRQQIEDPIMRKAVANAQQRIGANRQKMVDE
                     LGHWEEWRDRAAQIRDHVLSNLDAYLYQLSEKVTQNGGHVWFAKNKEDATRYILQVAQ
                     RKNARKVVKSKSMVTEEIGVNHVLQDAGIQVIETDLGEYILQLDQDPPSHVVVPAIHK
                     DRHQIRRVLHERLGYEGPETPEAMTLFIRQKIREDFLSAEIGITGCNFAVAETGSVCL
                     VTNEGNARMCTTLPKTHIAVMGMERIAPTFAEVDVLITMLARSAVGARLTGYNTWLTG
                     PREAGHVDGPEEFHLVIVDNGRSEVLASEFRDVLRCIRCGACMNTCPAYRHIGGHGYG
                     SIYPGPIGAVISPLLGGYKDFKDLPYACSLCTACDSVCPVRIPLSKLILRHRRVMAEK
                     GITAKAEQRAIKMFAYANSHPGLWKVGMMAGAHAASWFINGGKTPLKFGAISDWMEAR
                     DLPEADGESFRSWFKKHQAQEKKNG"
     gene            complement(2419..3138)
                     /locus_tag="JN078_004022"
     CDS             complement(2419..3138)
                     /locus_tag="JN078_004022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HAY9043028.1"
                     /translation="MNVNFFVTCIGDALKSRMARDSVLLLEKLGCRVNFPEKQGCCGQ
                     PAINSGYIKEAIPGMKNLIAALEDNDDPIISPAGSCTYAVKSYPTYLADEPEWASRAE
                     KVAARMQDLTSFIVNKLGVVDVGASLQGRAVYHPSCSLARKLGVKDEPLTLLKNVRGL
                     ELLTFAEQDTCCGFGGTFSVKMAEISGEMVKEKVGHLMEVRPEYLIGADVSCLLNISG
                     RLQREGQKVKVMHIAEVLMSR"
BASE COUNT          896 a          967 c          740 g          925 t
ORIGIN      
        1 gccttgtcaa aaaaatggta gatgaatacc aacaaaactc tgggcagtaa taaacaacat
       61 tctgatagag agtgcctgta taaagctgaa gtgacaatga ccgggaaggg aacccgtttt
      121 caggaatgga tgcctgtctt tttcactgta aatatcctgg cattactaat gccaggatat
      181 ttacagaaga gcagcataac catgacggaa cggggttaag tcaggttgtc cttaacgcta
      241 ttttcaacct cgtatgcctt cttcaggttt atgttcagat ctcatatctc tctcagcaat
      301 cctcaataat cagatacacc gctttcaccg ggccatgaac cccgacgact ttgataagct
      361 caatatccgc cgttgaacta gggccgctaa tgatgttaat gcaggacggc attcgttcac
      421 cggcctgcgc tttctgatgc aatttttctg cgagttgcgc tacacgcggc aggattgtgc
      481 ttttacgcag gataaaaaga gaagattccg ggagcaggct caatgaacgc ccgcgctcgg
      541 cggcggaaaa aagaaccacg cctcccgatt cggttaaacc atattcagca tacacaacac
      601 ccactttagc ctgctctgcc tgcgagatat tctcggcacc tttcgccgga tcccaaacaa
      661 cggcattgca ttcctgctgc aaacgttcac taatccccaa ttcctccagc ctcgtgtcac
      721 cgctaatcac gaccgactga tctcccagct ctttacacag acgtattgca gcttctgccg
      781 ccttcgcctc gctggtcagc tcacagcgcg tcaacataac atcgctggca aactgaataa
      841 acgcgtcaca gcgctgctgt tggttaagtt gggtaagccg ctcgttagca tagttgttaa
      901 gcggcgcatc ttctgcttgc ggttcaagtc gcagcgggcg acccagtgcc tgagcaatgt
      961 tattcaaaaa ttcgcctcga ttatccattc tttttctcct gcgcctgatg tttcttaaac
     1021 caactacgga aactctctcc gtcagcttca ggaagatcgc gtgcttccat ccagtcgcta
     1081 atcgcgccaa atttgagtgg tgttttgccg ccattgataa accagcttgc cgcatgagcg
     1141 ccggccatca tcccgacttt ccacaatcct ggatgactat tggcataagc gaacattttt
     1201 atcgcccgtt gctctgcttt tgcggtgatc cctttttcag ccatcacccg acgatgacgc
     1261 aaaatcagtt ttgacagcgg aatacgcacc ggacacacgc tgtcacaagc agtgcataaa
     1321 gagcaggcgt agggtaaatc tttaaaatct ttatagccgc caagtagcgg agaaatcacc
     1381 gcaccaattg gccctggata aatagagcca tatccatgac cgccaatatg gcgatatgcc
     1441 ggacaagtat tcatacaagc cccgcagcga atacagcgca gcacatcccg aaattcagag
     1501 gccagcacct cagaacgccc gttatcgaca ataaccagat gaaactcttc aggaccatca
     1561 acgtgccccg cttcgcgcgg tcctgtcagc caggtgttgt atcccgtcaa acgtgcacca
     1621 acggcactgc gcgccagcat ggtgatcaat acatctacct cggcaaacgt gggggcaata
     1681 cgctccattc ccatcactgc aatatgcgtt ttaggcagcg tggtacacat tcgcgcatta
     1741 ccttcattgg tcaccaggca taccgaacct gtctctgcca ccgcgaaatt acagccggta
     1801 atacctattt cagcactgag gaaatcttcg cggatttttt gccggatgaa taaggtcatc
     1861 gcttcaggcg tttccggccc ctcatagccc agacgttcgt gtagcactcg acggatctga
     1921 tggcgatctt tatgaattgc cgggaccaca acatgagatg gcggatcttg atccagctgg
     1981 agaatatatt cacccagatc ggtttcaatc acctgaatgc cagcatcctg caacacatga
     2041 ttgacaccaa tctcttcggt caccatcgat ttagatttca ccaccttccg ggcatttttg
     2101 cgttgggcaa cctgtaaaat gtagcgggta gcgtcttctt tgttttttgc aaaccagacg
     2161 tgaccgccgt tttgcgtcac tttttctgag agctggtaca gataagcgtc gagattactc
     2221 agaacatgat cacgtatctg ggcggcccga tcgcgccact cctcccagtg ccccaattca
     2281 tcgaccattt tttgccgatt tgccccaata cgctgctgcg cgtttgccac cgctttgcgc
     2341 atgatcggat cttcaatttg ctgacggatg cgagtcttaa aatctgtatt actggttttg
     2401 atcgacatct ttatatcctc agcggctcat caacacttca gcaatatgca tcactttgac
     2461 tttctgccct tcccgttgta atcgcccact gatgttcagc aggcaactca cgtcagcacc
     2521 aattaaatac tcagggcgga cttccatcag gtgcccaacc ttttctttca ccatctcgcc
     2581 ggatatttcg gccattttga ccgagaacgt gccgccaaat ccgcagcagg tatcctgttc
     2641 agcaaaggtc aacagctcca gtccacgcac atttttcagc agcgtaagtg gctcgtcctt
     2701 cactcccagc ttacgggcca ggctacaaga tgggtgatac acagctctcc cttgcaaact
     2761 ggcacctaca tcgactaccc ctaatttatt aacaataaaa gaggtgagat cctgcatacg
     2821 cgcggcaacc ttttcggcac gtgatgccca ttcaggttca tccgccagat acgtcgggta
     2881 actttttacg gcataggtgc aagagccagc cggtgaaata atgggatcgt cgttatcctc
     2941 cagtgcggcg atcagatttt tcatccctgg aatcgcttct ttgatataac cgctattgat
     3001 cgcaggctga ccgcagcatc cctgtttctc cgggaaattt acgcgacagc cgagtttttc
     3061 cagtagcagc acggagtctc gtgccattct tgatttcagg gcgtcaccaa tacaggtgac
     3121 aaagaaattg acattcacaa ctaatactcc attacttcat gcccatttat gcccgatgtt
     3181 tcccccccac cgggggatca atcatcaata aatatggcgt tcttttttaa ttggctagca
     3241 acatactacc cctcatttgt atgacaaatg ataatctttc acccaaacgt caaatgcaat
     3301 aactaatttt atttctttcg gcatcgctca cattttatgg agaaatcgac gatcattttt
     3361 ggcataagaa atccatttaa aaatggccac atcccttata cctattcaga gctacttatt
     3421 caggggttat tgagatatac actgatggtg tacaaacaaa atcaccgaca ataatcacgt
     3481 atcaagtaat agtcgggatt ttatttaatt gaagcaattt agtttgta
//
LOCUS       DADMJB010000252         3483 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.255, whole genome shotgun sequence.
ACCESSION   DADMJB010000252 DADMJB010000000
VERSION     DADMJB010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3483
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.255"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            1..1946
                     /locus_tag="JN078_004023"
                     /pseudo
     CDS             1..1946
                     /locus_tag="JN078_004023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414756.2"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
     gene            complement(1989..2462)
                     /gene="ivy"
                     /locus_tag="JN078_004024"
     CDS             complement(1989..2462)
                     /gene="ivy"
                     /locus_tag="JN078_004024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C-lysozyme inhibitor"
                     /protein_id="HAY9043029.1"
                     /translation="MGRISSGGMMFKAITTVAALVIATSAMAQDDLTISSLAKGETTK
                     AAFNQMVQGHKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEK
                     SNQMTGLFSTIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK"
     gene            2616..3386
                     /gene="yafV"
                     /locus_tag="JN078_004025"
     CDS             2616..3386
                     /gene="yafV"
                     /locus_tag="JN078_004025"
                     /EC_number="3.5.1.111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutaramate amidase"
                     /protein_id="HAY9043030.1"
                     /translation="MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMF
                     TSGFAMEAAASSLAQDDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTV
                     HFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLAI
                     YVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIA
                     TADAHQATRIDAELSMMALREYREKFPAWQDADEFRLR"
BASE COUNT          777 a          890 c         1001 g          815 t
ORIGIN      
        1 tgattatcaa aaaagagtac ggctgactgg agttctcagc ttatgcccag tctcgcgtgc
       61 tgcaaaaact ctccggcgtg agcgggatcc tggcgattac cgtcggcgtg ccgaactcat
      121 taggcccggg cgagctgctg caacattacg gcactgacga gcagaaagat cactatctgc
      181 cgcgtctggc gcgtggtcag gagatccctt gctttgcact gacaagcccg gaagcgggtt
      241 ccgatgcggg cgcgattccg gacaccggga ttgtctgcat gggcgaatgg cagggccagc
      301 aggtgctggg gatgcgtctg acttggaaca aacgctatat tacgctggca ccgattgcga
      361 ctgtgcttgg gctggcgttt aaactctccg acccggaaaa gctgctgggt ggcgcagaag
      421 atttaggtat tacctgtgcg ctgatcccga ccaccacgcc gggcgtggaa attggtcgtc
      481 gccacttccc gctgaacgta ccgttccaga acggaccgac gcgcggtaaa gatgtcttcg
      541 taccgatcga ttacatcatc ggtgggccga aaatggccgg gcaaggctgg cggatgctgg
      601 tggagtgcct ctcggtaggc cgcggcatca ccctgccttc caactcaacc ggcggcgtga
      661 aatcggtagc gctggcaacg ggcgcgtatg ctcacattcg ccgtcagttc aaaatctcta
      721 tcggaaagat ggaagggatt gaagagccgc tggcgcgtat tgccggtaat gcctacgtga
      781 tggatgctgc ggcatcgctg attacctacg gcattatgct cggcgaaaaa cctgccgtgc
      841 tgttggctat cgttaagtat cactgtaccc accgcgggca gcagtcgatt attgatgcga
      901 tggatatcac tggtggcaaa ggcattatgc tcgggcaaag caacttcctg gcgcgtgctt
      961 accagggcgc accgattgcc atcaccgttg aaggggctaa cattctgacc cgcagcatga
     1021 tgatcttcgg acaaggagcg attcgttgcc atccgtacgt gctggaagag atggaagcgg
     1081 cgaagaacaa tgacgtcaac gcgttcgata aactgttgtt caaacatatc ggtcacgtcg
     1141 gtagcaacaa agttcgcagc ttctggctgg gcctgacgcg cggtttaacc agcagcacgc
     1201 caaccggcga tgccactaaa cgctactatc agcacctgaa ccgcctgagc gccaacctcg
     1261 ccctgctttc tgatgtctcg atggcagtgc tgggcggcag cctgaaacgt cgcgagcgca
     1321 tctcggcccg tctgggggat attttaagcc agctctacct cgcctctgcc gtgctgaagc
     1381 gttatgacga cgaaggccgt aatgaagccg acctgccgct ggtgcactgg ggcgtacaag
     1441 atgcgctgta tcaggctgaa caggcgatgg atgatttact gcaaaacttc ccgaaccgcg
     1501 tggttgccgg gctgctgaat gtggtgatct tcccgaccgg acgtcattat ctggcacctt
     1561 ctgacaagct ggatcataaa gtggcgaaga ttttacaagt gccgaacgcc acccgttccc
     1621 gcattggtcg cggtcagtac ctgacgccga gcgagcataa tccggttggc ttgctggaag
     1681 aggcgctggt ggatgtgatt gccgccgacc caattcatca gcggatctgt aaagagctgg
     1741 gtaaaaacct gccgtttacc cgtctggatg aactggcgca caacgcgctg gcgaaggggc
     1801 tgattgataa agatgaagcc gctattctgg tgaaagctga agaaagccgt ctgcgcagta
     1861 ttaacgttga tgactttgat ccggaagagc tggcgacgaa gccggtaaag ttgccggaga
     1921 aagtgcggaa agttgaagcc gcgtaattga ataacggagc cgaaaggctc cgtttcttta
     1981 tccgctaatt atttaaaatt aaagccatcc ggatggtttt ccaggctgcc ggtcaacgcc
     2041 gcgaacagca ccgttttacc atcaatcgaa agcgcatcgt tcacattcag ccaggtgagt
     2101 ttctcttgcg acgttttctc atcaatagtc gagaacagcc ccgtcatctg attagatttc
     2161 tcggaccaca tcacagcgat acgttgcgag ccacagtcat gcggtttgca cgcgctcatc
     2221 acctgatacg tctcatctcc caacgttacg gtttgtgcgg gagtataagt accgcctttc
     2281 atcacccagg caggcagctt atgcccttgt accatctgat taaatgcagc tttggtggtt
     2341 tcgccctttg caaggctgct aatggttaaa tcatcctgcg ccattgcact ggtggcgatg
     2401 accagagcgg cgactgtcgt tattgcctta aacatcattc ctcccgagct tatcctgccc
     2461 atgttattaa ccttctaaag cctggcgata acacgataat ttgcaaatca gatatttcca
     2521 atatcagcat ttgttatcaa tttattctgc gctaaggcaa ctgcctgata aggtgttaaa
     2581 gttataaaac ccttcgcata aaggagttgt acaccgtgcc tggtttgaag attacgcttt
     2641 tgcagcaacc actggtgtgg atggatggcc ctgccaacct gcgtcatttt gatcgtcaac
     2701 tggaaggtat taccgggcgc gatgtgatcg ttctaccgga gatgtttacc agcggctttg
     2761 ccatggaagc ggcagcttcg tcgctagcac aagatgacgt agtgaactgg atgacagcta
     2821 aggcgcagca gtgcaatgcg ctgatagcag gcagtgttgc attacaaacg gagtctggtt
     2881 cggttaaccg ctttttgctg gttgagccgg gcggcacggt acatttttat gataagcgtc
     2941 atctgttccg catggcagat gagcatctac attataaagc gggcaatgcg cgagtgattg
     3001 tggaatggcg cggctggcgt attttgccgt tggtgtgcta cgacttacgt tttccggtgt
     3061 ggtcgcgcaa tctcaacgat tatgacctcg ccatctacgt tgccaactgg cctgctccgc
     3121 gctctctgca ctggcaggca ttgctgacgg cccgcgcgat tgagaatcag gcgtatgtgg
     3181 cgggatgcaa tcgcgtcggc agcgatggca acggctgcca ttatcgcggt gacagccggg
     3241 tgattaatcc acaaggcgag attatcgcta ctgccgacgc gcatcaggca acgcgcattg
     3301 atgcggagct gtcgatgatg gcattgcggg aatatagaga aaagtttccg gcatggcagg
     3361 atgcggatga gtttaggttg cggtgagtgg gggttgtgtt taaggctggg ggagagtcgg
     3421 ggtaagacta cgaaagcccg ctctccgcaa ggactgacgc cagatagttt ctgtccatag
     3481 ctg
//
LOCUS       DADMJB010000253         3410 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.256, whole genome shotgun sequence.
ACCESSION   DADMJB010000253 DADMJB010000000
VERSION     DADMJB010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3410
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.256"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(20..322)
                     /locus_tag="JN078_004026"
     CDS             complement(20..322)
                     /locus_tag="JN078_004026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000890114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043031.1"
                     /translation="MLEIVLSPVKAQQFTVTLGAQVCTIRLNQRTTGMYIDIIVNGEP
                     CLYGVLCLNNNRIVRYGYLPFQGDLFFTDTEGNSDPDWRGLGSRYRLYWLLPEELI"
     gene            complement(322..1032)
                     /locus_tag="JN078_004027"
     CDS             complement(322..1032)
                     /locus_tag="JN078_004027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000010340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043032.1"
                     /translation="MSFSFDNISLNNFSLSESNVLSAVRGGGVLGLINSVLAPSFGIY
                     YARNDPAGAHQKGGKPFSPDSFVVVEVGAEASVSTVPVEQGAYTTFNKIQRSPELHVT
                     FIVEGWTAFSGSVPNLTNFSTTSRTNVLETLERMRTTAGLYDIETPDKTWTSCDLVKY
                     DYRMRSNNGPTLLTVTAVFQTVMNTGEVSVGSTDKSSPTDNDKAKGAASVKTQPVTAS
                     VTQPSDADRRSATNRGIT"
     gene            complement(1029..3050)
                     /locus_tag="JN078_004028"
     CDS             complement(1029..3050)
                     /locus_tag="JN078_004028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000079879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HAY9043033.1"
                     /translation="MAQVLDELVLSLGIDDRDFTAGEQAVHAALNRLTTVMEGVADTF
                     SQGQKKTSESLEKTGKDADKTARRMEDAGKRASRFFSGIRSEILALAGVSLTLGGLKN
                     LVTGFARDLNRLSVESDAFGMKARNLDGWLRAARANNVDEGEMSGAFSRLANAKAAFR
                     AGRSFDPVLQDLFQVAARAGISVDLNTDSTEAIMRKLAVIFPRLTKSEQTAYGNALGF
                     SYAGQQFLGSGHALKDVDEFTSRSQVTPGRTALARKLRKELVELDQTWSGIGMTISTA
                     LMPYALKLSHWLETLGDWMQQHPEEVNRFITTFLNDVESVASLANKAAGELGGWQNVI
                     ITLIGLKVASWVRGLTKALSGPGGLLFAITALYPVVDGLLTSIVGRENKDWLDSHGFF
                     WASDGTFFFNKKEMETYQTKLDVGEKPGNITRAQSPTVWQQGMLDTQASQATGREAAF
                     GESWLQGMRATQEKLGNAMQNRQRPTKTGEALLGWLQPKLSQLEEKYNLPPGLLRSVA
                     ITESRGNQFAVSPAGAMGLFQFMPKTASEFGLRGNDAFDPEKAADAAARKLGGLIRFF
                     HGDLAKALAAYNWGEGNVQRKGLAAAPEETRNYIPRVLANLPYPGAAMAIRSLHPAPV
                     SQSTVTETTHIGTLNVTTTSDNVKGITDDARRRITNSALVSVYSSGVTG"
     gene            complement(3034..3216)
                     /locus_tag="JN078_004029"
     CDS             complement(3034..3216)
                     /locus_tag="JN078_004029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000228829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HAY9043034.1"
                     /translation="MVDYVNVPRTIATVISSGKASKAELDSVLGVQDLWDLLEIIHVD
                     AHNEQVIQENRNGAGT"
BASE COUNT          798 a          993 c          814 g          805 t
ORIGIN      
        1 attttacgtt gtctgtagct catatcagtt cctcaggtaa cagccagtag agccggtacc
       61 gggatccgag cccccgccag tcagggtcac tattcccctc cgtgtcggta aaaaacaggt
      121 ccccctgaaa cggcaggtat ccgtaccgga caatccggtt attattcaga cacagcacgc
      181 catacaggca cggttcacca ttaacaatga tatcgatata catccccgta gtacgctgat
      241 tcaggcgaat ggtgcagacc tgagcgccca gtgtcaccgt aaactgctgg gctttaacgg
      301 gagataaaac aatttccagc atcaggtgat ccccctgttc gtggcacttc gtctgtcagc
      361 gtctgacggt tgtgtcaccg acgccgtaac tggctgcgtt ttaaccgatg cggccccttt
      421 tgctttatcg ttgtccgtgg gagacgactt atccgtactt cccactgaca cctctcctgt
      481 attcattacg gtctgaaata ccgcagtaac cgtcagtaag gtcggaccat tattacttcg
      541 cattcggtag tcatatttca caaggtcgca ggatgtccat gtcttgtccg gcgtctcaat
      601 atcgtagagt cctgccgtgg tacgcatcct ttcaagcgtt tccagcacat tcgtccgcga
      661 ggtggtggaa aaatttgtca ggttcgggac ggatccggaa aaggccgtcc acccctctac
      721 aatgaaagtc acatgcagtt ccggcgatct ctggatttta ttaaaggtgg tataagcccc
      781 ctgctccacg gggacggtgg aaacagaagc ctccgcgccc acctcaacga caacaaaaga
      841 atccggggag aaaggtttgc cacccttctg atgggcacct gccggatcat tccgtgcgta
      901 ataaataccg aatgacggtg ccagtacact attaatgagt cccaggacac cgccgccacg
      961 aactgcactc agtacgttac tttcactgag cgaaaagtta ttcagggaaa tattatcgaa
     1021 agaaaaactc atcctgttac cccgctggaa taaaccgaca caagcgccga attcgtgata
     1081 cgccgacgtg cgtcatcggt aatacccttc acattgtccg acgttgtggt gacattcagt
     1141 gtcccgatat gcgtggtttc cgttacggtg gactgcgata caggcgcagg atggagcgac
     1201 cgtatggcca ttgccgcacc cggataaggc aggttcgcca gcacccgcgg aatatagttg
     1261 cgggtctcct ccggagcagc agccagtccc ttacgctgaa catttccctc tccccagtta
     1321 tatgccgcca gagccttagc cagatcgcca tgaaaaaaac gtatcaggcc accaagtttt
     1381 ctcgcggcgg catcagcggc tttttcggga tcaaaggcat cgttccccct cagaccaaat
     1441 tcactggccg tcttcggcat gaactgaaac agtcccatcg caccagcagg tgagacggca
     1501 aactgattac cacgggattc ggtgatcgca acgctgcgca gcagtccggg cggcaggtta
     1561 tatttttcct ccagttgaga cagtttcggt tgcagccagc ctaacagggc ttccccggtc
     1621 ttcgtcggtc gctggcggtt ttgcatggca ttaccgagtt tttcctgcgt cgcacgcata
     1681 ccctgtagcc aggattcacc gaaggctgct tccctcccgg ttgcctgaga agcctgagta
     1741 tccagcatgc cctgctgcca tactgtgggt gattgtgccc gggtgatgtt gccaggcttt
     1801 tctccgacat ccagttttgt ctgatacgtc tccatctctt tcttattgaa aaagaaagtc
     1861 ccgtctgaag cccagaaaaa accatgtgaa tccagccagt ccttattttc cctgccaaca
     1921 atggatgtca gtaatccgtc aacaaccggg taaagcgccg ttatcgcaaa aagaaggcct
     1981 ccggggccac tgagggcttt tgtcagcccc cgcacccatg acgccacttt cagcccgatc
     2041 agcgtaataa tgacattctg ccagcccccc agttctccgg cagccttatt cgccagggag
     2101 gccactgact caacgtcatt cagaaatgtg gtgataaacc tgttcacttc ctccggatgt
     2161 tgctgcatcc agtcaccgag tgtctccagc cagtggctga gcttcagcgc gtacggcatc
     2221 aacgcggtgc taatcgtcat cccgatgccg gaccaggtct gatcgagctc aacaagctct
     2281 tttcgtagct tacgggccag cgctgtacgc cccggcgtaa cctgcgaacg ggaagtaaat
     2341 tcgtccacat ctttcagcgc atgaccggag ccaagaaact gctgtccggc ataactgaag
     2401 cccagcgcgt tgccgtaggc agtttgttcg gactttgtca gtcgcggaaa aataaccgcc
     2461 agcttgcgca tgatggcttc agtgctgtca gtatttaaat caacactaat gcccgccctg
     2521 gctgcaacct gaaacaaatc ctgtaacaca ggatcaaagg accttccggc tctgaaggcc
     2581 gcttttgcat ttgcaagccg ggaaaatgcc ccagacattt ccccttcatc aacattattt
     2641 gcccgcgcag cccgtaacca tccgtccaga tttctggcct tcatgccaaa agcatcggat
     2701 tccacggaca gacggttcag atcacgggca aaacctgtta ccaggttctt cagccccccc
     2761 agcgtcagac tgacacccgc aagagccaga atctcgctac ggatccctga aaaaaaacgg
     2821 gacgcccgtt tcccggcatc ttccattcga cgggccgttt tatcagcatc ttttccggtt
     2881 ttttccagtg attcactggt tttcttctgt ccctgactga atgtgtcagc gacaccttcc
     2941 atcaccgtcg tgagccggtt aagggcagca tgtactgcct gttccccggc agtaaagtcc
     3001 ctgtcatcaa tcccgaggga cagaacaagc tcatcaagta cctgcgccat ttctgttctc
     3061 ctgtatcacc tgttcgttat gggcatccac atgaattatt tccagcagat cccataagtc
     3121 ctgcacacca aggacagaat ccagttcagc ttttgaagcc ttaccggagg agataacggt
     3181 cgcaatggta cggggaacat taacgtaatc caccaccccg aacggtctgt cggggtcgag
     3241 ataacgcggg gggatatcta gctgacgacg gtagcgaaaa aatccacatg cagcttaaag
     3301 acctccgcac gcagattaag acgggtaatg atttcttcaa tatcctcttc aacaagcggt
     3361 ctccggatgc tgcgtttttt cggatcggga acaaactgca cacagtccat
//
LOCUS       DADMJB010000254         3332 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.257, whole genome shotgun sequence.
ACCESSION   DADMJB010000254 DADMJB010000000
VERSION     DADMJB010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3332)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3332)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3332
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.257"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..513
                     /locus_tag="JN078_004030"
     CDS             <1..513
                     /locus_tag="JN078_004030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005105555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HAY9043035.1"
                     /translation="SVAPLPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKT
                     GKKQIKAWSPRLQAAIEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISG
                     ILTDFTFHDLKAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKVKVSPTLDVPLPENI
                     PSNSTCDFCH"
     gene            complement(541..630)
                     /locus_tag="JN078_004031"
     tRNA            complement(541..630)
                     /locus_tag="JN078_004031"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(594..596),aa:Ser,seq:cga)
     gene            724..1521
                     /gene="mtfA"
                     /locus_tag="JN078_004032"
     CDS             724..1521
                     /gene="mtfA"
                     /locus_tag="JN078_004032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310801.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DgsA anti-repressor MtfA"
                     /protein_id="HAY9043036.1"
                     /translation="MIKWPWKVQESAHQTALPWQEALSIPLLTCLTEQEQSKLVTLAE
                     RFLQQKRLVPLQGFELDSLRSCRIALLFCLPVLELGLEWLDGFHEVLIYPAPFVVDDE
                     WEDDIGLVHNQRIVQSGQSWQQGPIVLNWLDIQDSFDASGFNLIIHEVAHKLDTRNGD
                     RASGVPFIPLREVAGWEHDLHAAMNNIQEEIELVGENAASIDAYAASDPAECFAVLSE
                     YFFSAPELFAPRFPSLWQRFCQFYQQDPLQRLHHANDTDSFSATNVH"
     gene            1622..1697
                     /locus_tag="JN078_004033"
     tRNA            1622..1697
                     /locus_tag="JN078_004033"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1655..1657,aa:Asn,seq:gtt)
     gene            1984..3120
                     /locus_tag="JN078_004034"
     CDS             1984..3120
                     /locus_tag="JN078_004034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016246071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043037.1"
                     /translation="MLARSGKVSMATKKRSGEEINDRQILCGMGIKLRRLTAGICLIT
                     QLAFPMAAAAQGVVNAATQQPVPAQIAIANANTVPYILGALESAQSVAERFGISVAEL
                     RKLNQFRTFARGFNNVRQGDELDVPAQVSEKKLTPPPGNSSDNLEQQIASTSQQIGSL
                     LAEDMNSEQAANMARGWASSQASGAMTDWLSRFGTARITLGVDEDFSLKNSQFDFLHP
                     WYETPDNLFFSQHTLHRTDERTQINNGLGWRHFTPTWMSGINFFFDHDLSRYHSRAGI
                     GAEYWRDYLKLSSNGYLRLTNWRSAPELDNDYEARPANGWDVRAESWLPAWPHLGGKL
                     VYEQYYGDEVALFDKDDRQSNPHAITAGLNYTPFPLMTFSAEQR"
     gene            3124..3332
                     /locus_tag="JN078_004035"
                     /pseudo
     CDS             3124..3332
                     /locus_tag="JN078_004035"
                     /inference="COORDINATES: protein motif:HMM:NF023351.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          887 a          781 c          793 g          871 t
ORIGIN      
        1 agcgttgcac ctcttcctgt ttttatcgca atggaaattg cctatctgtg tgcagcgagg
       61 gtttccgatg tgttatcgct gaaatgggag cagattggaa acgacgggat ctttatccag
      121 caagggaaaa caggaaaaaa acagataaaa gcatggagtc cacgattaca ggcggcgatc
      181 gaaaaagcaa aacagttacc aacatccgcc tatgtaatca gcaatcaata cggcaaccga
      241 tatatgtaca aaggctttaa cgaaatgtgg gtagaagcaa gaaatcgcgc aggcaaaatt
      301 tcaggtattt taaccgactt cacctttcat gatctgaagg cgaaaggaat ttcagactat
      361 gaaggaagca gtcgggataa gcaacttttc tctggtcaca aaaccgaggg gcaagtgcta
      421 atctatgaca ggaaggttaa agtttcaccg acacttgatg tcccgttacc tgaaaatatt
      481 ccaagtaatt ccacgtgtga tttttgtcac tgacttaatg atgtataagt gattgaattt
      541 tggcggagag agggggattt gaacccccgg tggagttgcc cccactccgg ttttcgagac
      601 cggtccgttc agccgctccg gcatctctcc gttcagatgg ttgccatgat gccaggaaat
      661 ttggcatttt aacagtccct gtccgtgcaa ttttgttcaa gtgacgagtt tgcgagcaaa
      721 acgatgatta agtggccctg gaaagtacaa gaatcagcac atcaaactgc ccttccctgg
      781 caggaagcac tatcgatccc ccttttaacg tgtctgacgg aacaggaaca aagcaaatta
      841 gtcactcttg ccgaacgttt tttacagcaa aagcggcttg ttcctttaca gggctttgaa
      901 ctggattcat taagaagctg ccggatagca cttctatttt gcctacccgt tctggagtta
      961 ggactggaat ggctggatgg ttttcatgaa gtcttaattt atcctgcgcc atttgtggtc
     1021 gatgatgaat gggaagacga tatcggtctg gtgcataacc aacgtattgt tcagtcaggt
     1081 cagagctggc agcaagggcc tatcgttttg aactggttgg atatacaaga ttcttttgat
     1141 gcttctggtt ttaacctgat tattcatgaa gtcgctcata agctggacac ccgtaacggc
     1201 gatcgcgcca gcggagttcc ctttattccg ttgcgtgagg ttgctggctg ggaacacgat
     1261 cttcatgctg caatgaacaa cattcaggaa gaaatcgaat tggttggcga gaatgcggcg
     1321 agcattgatg cttatgcagc cagcgatcct gctgaatgtt ttgccgtact ttctgaatat
     1381 ttctttagcg ccccagaact ttttgctcct cgtttccctt cattgtggca acgtttctgc
     1441 caattttatc aacaagatcc tttgcagaga ctgcatcacg ctaatgatac agactcgttt
     1501 tcggcgacga atgttcatta attaacaact ttgcatatta attaaccaat tgaaatgact
     1561 tatgaaattt agtgttgaca gacaaggtac cgctaagtaa tatgcgcccc gttcacacga
     1621 ttcctctgta gttcagtcgg tagaacggcg gactgttaat ccgtatgtca ctggttcgag
     1681 tccagtcaga ggagccaaat tctaaaaatt cgctttttta gcgcaatgtc actgacctta
     1741 gttgaacatt gttttttaac ggatagcggg tttttaacat cttaagcgcc ctcgaccttt
     1801 atggttgagg gcgttttgct atgaacgcca tcaccatttt cccctcgatt ataaaacttg
     1861 agttattcag tagtctcccc tcttgcaact cacacccaaa actgcctaac gaaaagttat
     1921 taattttcaa tcatattgct atcagtattt acattttttc gctgtgctag aaagggcgca
     1981 tttatgttag ctcgttcagg gaaggtaagc atggctacga agaagagaag tggagaagaa
     2041 ataaatgacc gacaaatatt atgcgggatg ggaattaaac tacgccgctt aactgcgggt
     2101 atctgtctga taactcaact tgcgttccct atggctgcgg cagcacaagg tgtggtaaac
     2161 gccgcaaccc aacaaccagt tcctgcacaa attgccattg caaatgccaa tacggtgccc
     2221 tacatccttg gagcgctgga atcggcccaa agcgttgccg aacgtttcgg tatttcggtg
     2281 gctgagttac gcaaactcaa ccagtttcgt acgtttgctc gaggttttaa taatgtccgc
     2341 cagggtgatg aactggatgt cccggcacaa gttagtgaaa aaaaattaac cccgccgccg
     2401 ggtaatagca gtgacaacct cgagcaacag atagccagta cttcacagca aatcgggtct
     2461 ctgctcgccg aagatatgaa cagcgagcaa gcggcaaata tggcgcgtgg atgggcctct
     2521 tctcaggctt caggcgcaat gacagactgg ttaagccgct tcggtaccgc aagaatcacg
     2581 ctgggcgtgg atgaagattt tagcctgaag aactcccagt tcgattttct ccatccgtgg
     2641 tatgaaacgc ctgataatct ctttttcagt cagcatactc tccatcgtac tgacgagcgt
     2701 acgcagatta acaacggctt aggttggcgt catttcactc ccacatggat gtcaggcatc
     2761 aacttctttt tcgaccacga tcttagccgt taccactccc gcgccggcat tggcgcggag
     2821 tactggcgcg actatctaaa attaagcagt aacggctatt tgcgactgac caactggcgc
     2881 agcgcacctg aactggacaa cgattatgaa gcacgcccgg ccaatggctg ggatgtacgc
     2941 gcagaaagct ggctacccgc ctggccgcac cttggcggta aactggtcta tgaacagtat
     3001 tatggcgatg aagtggccct gttcgataaa gacgatcggc aaagtaatcc tcatgccata
     3061 accgctggac ttaactatac ccccttcccg ctgatgacct tcagcgcgga gcaacgctag
     3121 ggtaaacagg gcgaaaatga cacccgtttt gccgtcgatt ttacctggca acctggcagc
     3181 gcaatgcaga aacagcttga cccgaatgaa gtcgctgcac ggcgtagcct tgcaggcagc
     3241 cgttatgatc tggtggatcg caacaacaat atcgttctgg aatatcgcaa aaaagaactg
     3301 gttcgcctga ccctgacaga ccccgtgaca gg
//
LOCUS       DADMJB010000255         3327 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.258, whole genome shotgun sequence.
ACCESSION   DADMJB010000255 DADMJB010000000
VERSION     DADMJB010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3327)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3327)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3327
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.258"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(1..2652)
                     /locus_tag="JN078_004036"
                     /pseudo
     CDS             complement(1..2652)
                     /locus_tag="JN078_004036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415720.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
BASE COUNT          825 a          778 c          772 g          952 t
ORIGIN      
        1 acatagacat tcagctggct gttgcctgcg gtgatgtcat accccagtat catgctggca
       61 cgccccagca gcgattcgta gtgattcaga tgtatattga ggccattact cgccttcata
      121 gccatctcat tctggtggct gtatgtaagc tgggtttgcg gctctatata gaacccataa
      181 ccagtagggg acaggttgaa cctctgcccg gcttctaggg agatgctcat tccattcgca
      241 gtgccgttgg cgttaacgcc gttgttatga ctgtccagta cgtggaaact atttttctgg
      301 cgcgatgctt ttataacgag atcgctgtaa aaaccgtttt gtgccatgta actggcgtac
      361 attcccatgt agtctgaacg tgcggtaccg tcgcctccgc tatagtccgg cgatgcatgt
      421 gttgagccaa tatacagacc gacatacaac ggcatttcat cagagagacg tttatcccca
      481 ccaaactgga taccgctgta acccatgtca aagccgctca gtttgccact ggcaaaggag
      541 tctaggcttc ccccataact gcgcaaccag atattaccgt ctttactctg atttcgcagg
      601 tcacccatcc gttgcatcag cgtacggttt tcaacatagt tcaataagta accgacattg
      661 agataattgc cgccagcatc tgcggtcgtg gtgggtttag gcgtgggagc gggttcaggc
      721 gtaggatcgg ggttgactat gggaggctga gcgggagctg gtgtgggttc aggattagga
      781 gtcggttccg gaactgtccc ggaagcgtaa agctcccagt tagtgccatt tttacgcaca
      841 tcgtacagat atccccccca actcaacctg agaagacgcg ctgaacgagg ccgcgccgtc
      901 agtggttttt accactgtca gaacttcatt tcccgttgtg gcctcgctgc cctggttgcg
      961 gatagccaat acgtgattac cagcactact cccgctgata ttcaataaat cccctttatt
     1021 attaacgcca ttaccctcgc caacaacatc agcacgcata ataaaggtac tgttaccgct
     1081 caggttctct acgtttaatg tggcaaatgt gccggcagtt gacccgtggc tggcaaaatc
     1141 gacagttgaa tggctcagcg ccagcgtgtc gagattagaa ttacttgtta cgttccagac
     1201 gctgttattc attgcaacgt ccagttttcc gccattgaca ttatcgctga gggaggaacc
     1261 tgtccaaacc gacccagggt gcatatccag attgattagc ccacctttgg aaaaaacgct
     1321 accgttgata agcatacgac ccgaggcgtt gatgcggctg gcggcataac catcgtcatg
     1381 ttgcgttgca atggccatct ggtcgggtgt actcatatca atgaccagat cgctcgtgag
     1441 gtcgatctgg ctgttggtca tggcataaat tcccctggct cctgccgcgc cggtgatagc
     1501 caaactgtct ccggttattc taccgccgct gagcgcccac aaacccagcg ccagactgcc
     1561 attacgatca actgtaatat cggtattttg catgttgaca acagccgttg ccgtctgggc
     1621 cgaggcacca taagaaccgc cggaaaagat gctgtttcgt tgcgctgccg tgccagaaaa
     1681 attgattgtc gcgtctgaac cactggtgac gaggccaccg ccctgcgcgg aagaaatatg
     1741 gctatctgca ccgatagtgg ttgtaccacc acgaacttcg acgccattgg ccgcggctcc
     1801 agttacatca acagtgagtg cattcgcgct aacctggcca aagctccaga ggccgtgtgc
     1861 attatcgcca ttggttttaa tggaactgtt tgttccgaga tcgacaacag agtttttctg
     1921 tacgtttatc cccatggcgc tgtagccctg aacatcgatt gtcaggtctg tagccgtaaa
     1981 acgcgcagca ccattggcgt tattgccgtt gagaccaccg atataaacac ctgtacttcc
     2041 atcggtcgtg attttacttc cgcttccaag atcgacactg gtgccatagt cattgatggt
     2101 taggcctata ccgttcgagt tttcaatggt gaattgagtg gctgttagtg ttgagctatg
     2161 cccaataatg atgccgtcat cgttactctt aatggtgctg cctgtgccta agtcagcatg
     2221 ggtatagtca ccaattaagt taatgccgat ggcagaggtt tgaccaacaa catctactgt
     2281 gagtcggtta gctgtcaggg agctgttttt gccctgaata atgattcctt ttgcatatcc
     2341 agaggcgtcg ttgacattga cggtgacatc attacccagg ttgatattgc caggcgtgtt
     2401 tcctgctggg gtcattacac catagaggtt tcctgatgga tcggcggtat ctcctgtaat
     2461 tctgtcacca tcattaatag taatattggt gccatattga cttcctgtat cagcagctat
     2521 cagcaggggg gaaaagataa ttgcattcaa accaatagcg ccaaatttta tcagttgaat
     2581 tgagggcgaa cggattttta attcagcgag acgatctgct ttggtattcc cattgtgttg
     2641 tttgatgccc ataccactcc tatatagtac ccagactatg ggtctatgga ttttgtcatt
     2701 ttgtttaaat caatgaataa tatcctctta tcatcatgat atttgtatgg tgcaatcatg
     2761 atgagcttct cagagaataa ttctctatta ccgggcaaaa tcaggaacac aggaattaat
     2821 atatatttaa catccccctt acaaaggtga gtttatatcg agttattccc taagttgtcg
     2881 ttacttattc caattcgtta ctataaatat ggcaaaaata ttacaacaaa cagcggttaa
     2941 aaaatttggt gaagattttt tgtaataatc ctaattagtt atgggaattt cgcttgatgt
     3001 atctgcataa caaaaacaat atgcgccatt tttgcattac taataagaaa aagcaaaaaa
     3061 catcgatatt catttttggt caatgggttt tctggcctat cgttgttatt gtgctactgg
     3121 ttatcatttt catcttgcca gcatattgga gcgtgatcaa ttttgatcag ctgtgaaggt
     3181 ggctgatgtg tagtgataca aaaacttacg ttatatcact gctaatgaga tatccgtcat
     3241 ctgaacactt atgtctttaa ttattctcgt ggttcactat aggcaataag cacaaaagtg
     3301 taggatgtta caagaatgat taggact
//
LOCUS       DADMJB010000256         3319 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.259, whole genome shotgun sequence.
ACCESSION   DADMJB010000256 DADMJB010000000
VERSION     DADMJB010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3319)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3319)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3319
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.259"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..211)
                     /locus_tag="JN078_004037"
     CDS             complement(<1..211)
                     /locus_tag="JN078_004037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000589351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043038.1"
                     /translation="MIRFRLYIPPVILGFVIVPLLVWPTVIVLAVLIFTLTFLAEIIF
                     SFPLLVVCISLQELQLELMVEYALFF"
     gene            complement(214..981)
                     /locus_tag="JN078_004038"
     CDS             complement(214..981)
                     /locus_tag="JN078_004038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001182130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043039.1"
                     /translation="MQPSPAMQALIEQIYHTFRRYRVPQKFVVCCEYCLSQQEQKALR
                     STSLRAIPYSLINAWNSSPGPDPQNSDEVRYFLPRLLEFVAQGHFDNIHVVFSLRRIN
                     LANKENWRADERAILQRFACQYMTDWVSGDEAVELQYMLEMFFRADIALAPLLDAINS
                     VPGFWSTVSLACLLNRYCEDYIRDNQDDIDNVITTQINAWARNNHPLLKERARQAIEN
                     PLKQPEPMTEYQVWEDDWIIDECLCAMYDASSESLGK"
     gene            complement(984..1694)
                     /locus_tag="JN078_004039"
     CDS             complement(984..1694)
                     /locus_tag="JN078_004039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000424214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043040.1"
                     /translation="MELVNTLFASLAGTDPFTGVDITIANCKSAYWDEGIVQQLINQA
                     LDEGEKFVGADGLEGLLRYDVTLNIGLTSSKVWPGFSLDTATISRLCACGADFGFDPY
                     ISDVPDVQCDLNTTNDVTVQFTAMLNPDERVIIAKRPLKKCDSWIEDVYIFQVFKDAW
                     KFHNNNSLRGFRDKQAELKLYTRHYSVENCAEESCRDCNSCIRPSFSLSRSALIRLNA
                     ANARFVYQPFTRDQRARG"
     gene            complement(1710..3215)
                     /locus_tag="JN078_004040"
                     /pseudo
     CDS             complement(1710..3215)
                     /locus_tag="JN078_004040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001472437.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PstS family phosphate ABC transporter
                     substrate-binding protein"
BASE COUNT          934 a          797 c          728 g          860 t
ORIGIN      
        1 tgaaaaaaag tgcatattca accattaact caagttgtaa ttcctgaaga gaaatacaca
       61 caaccaggag cggaaaggag aatattattt ctgccagaaa agttaacgtg aatataagta
      121 cggctaagac aataaccgtc ggccatacca ataatggcac gataacaaaa ccgagaatta
      181 cagggggaat ataaagccgg aatctaatca tttttatttt cctagtgatt cggatgatgc
      241 gtcatacatc gcgcataaac actcatcaat tatccagtca tcttcccaga cctgatattc
      301 tgtcattggt tcgggctgtt ttagcgggtt ctcaatcgct tgccgcgctc tttctttcag
      361 taaaggatga ttatttctag cccaggcatt gatttgggtg gtaatgacgt tatcgatatc
      421 gtcctggtta tctctgatat aatcctcaca atatctgttc aataaacagg caagagaaac
      481 ggtcgaccaa aagccgggaa ctgaattaat ggcatccagc aatggcgcaa gagcgatatc
      541 ggcacggaaa aacatttcca gcatatactg taattcgaca gcttcatcgc cggataccca
      601 atcagtcata tactggcagg caaatcgctg taaaattgcc cgttcatccg cacgccagtt
      661 ttctttgttg gcaaggttga tacggcgcag agaaaaaact acgtgaatat tgtcaaaatg
      721 cccctgtgca acaaattcca gtaaacgcgg cagaaaatag cggacctcat cgctattttg
      781 cggatcaggc cctgggctac tattccaggc attgattaag gaatacggga tcgctcgtaa
      841 cgatgtactc cgtaatgcct tttgttcctg ctgactcagg caatattcac aacaaaccac
      901 aaatttctgc ggcacccgat aacgacgaaa ggtgtgataa atctgctcaa ttaatgcctg
      961 catggcgggg ctgggttgca tagttacccc ctcgcccgct gatcgcgtgt aaacggttga
     1021 tagacaaaac gagcattcgc cgcgttcagg cgaataaggg cgctacgcga aagggaaaag
     1081 ctggggcgaa tgcaactatt gcagtctcga cagctttcct ctgcgcaatt ttccactgag
     1141 taatgacgcg tgtagagttt cagttcggcc tgcttatcgc gaaatccgcg taaactgtta
     1201 ttgttatgaa atttccaggc atctttaaag acctgaaaga tatagacatc ctcaatccag
     1261 gagtcacatt ttttaagcgg gcgctttgct attatcaccc gctcatccgg atttagcatc
     1321 gccgtaaatt gtacggtgac gtcatttgtc gtgttcaggt cacattgaac atctggtaca
     1381 tcactgatat aggggtcaaa tccaaaatca gcaccacagg cacaaagacg gctaatggtg
     1441 gcggtatcga gggaaaatcc cggccatact ttgctggagg ttaagccaat atttaatgtg
     1501 acatcatatc gaagcaatcc ctcaagaccg tcagcaccga cgaacttttc cccttcatcc
     1561 agggcctggt taataagttg ctgaacaatg ccttcatccc agtatgccga tttgcagttg
     1621 gcaatcgtaa tatccacgcc tgtgaaggga tcagtaccgg caaggcttgc aaataatgta
     1681 ttaactaatt ccatttttat tatccagctt taaggtagcg tcttatacat cgggacataa
     1741 cctacatctt ccaccaaact ctgtccctgc ggcgttaaaa accactccaa caatttttgt
     1801 gtctctgacg tcgtattttc ccgcgttacc ataaaggcat cgatgatata gggatatttg
     1861 ccgttgcgaa tgttttcggc agtcggtgca ataccgttaa tcgctagcag ttttatattt
     1921 ttatcggcgt tcatttgtgt tgcgtaataa cggaaggtgt aacctattgc gttgtttgta
     1981 ttacggtatt cggcaacgac tttaatcatt ccctccatca tacttgccac ttctgtttcc
     2041 tgcggcgaga tcatgcggac atttttcatg acctgggatt gcatcaccgt ctggctacca
     2101 gagtcttccg ggcgttgcta ggtctggatc tcctgatcgt taccgccaac agtacgccag
     2161 ttggtaattg caccactgaa gatgtcacgc acctgttgtt cagtcaggga attaaccgga
     2221 ttatccgcat tgacgatgaa aacaaacgct tcacgggcaa aaggcgtgta cagcaaagta
     2281 atgcccgatt cctcagcgcg ttttttctgc ccaccggaag gttgcgccac aaaaataata
     2341 tcagcatcac ctttaacaat cctgttatac gcatcggggg tacgagagct ctccagatat
     2401 tccctggtgt gaaaatcttc cggtataacg ctcaaagcat aaaatgcaga ggcataaatt
     2461 gggtacgccg ccgtagcacc atcgagtcgc ggccagtttt gcgtaaactg aatttgcggt
     2521 ttaccacgca gtggtgtcag ttgattattg agtttatcgg gtcgccaggc ccaggtatca
     2581 atattttcgc gcacaccgac gccgggattg agctgtttat ataaataacc ctgataacca
     2641 gcgacaaaac caagcatgag aaggataaac aggagggaat tacggcaacg tagcccggat
     2701 gtaccggtta aaggatgtct ggttggccgg ccgtacccca gcgaaaaact gatatgcgcg
     2761 ccaacgggta taatgactat ccaccagtac tcacctccga ctactgagac taacaaaacg
     2821 cccagccagg ggagcataag atcagccaac caacccgatc ccatctggtg aaattgataa
     2881 tctgccagat gcagcgcgat tatccagcca accaggatta ataaaccggg tactaaaaaa
     2941 agacattgtc gccagacggc tatttctctt ttttctggtg cactatcgcc tgcccatact
     3001 cgccccgaga aaaatagcat taatgcgccc agcgccagca taaaaatgtt gagcagaagg
     3061 taacttgttg gcgtgataag gatattacaa acttcaataa taccggcaag tccgacaccc
     3121 agcatagcaa caaccgccgc caaaaattgc gtcagtatgg ggatgccgaa aaaagtcatt
     3181 accagcgagg acaaaatcca ttttctgttt tgcattattc tttccattct ttttgaatgg
     3241 tgaaattata ctccccgagt ccccttgccc cttctggaca cttttccgaa atgatggcgg
     3301 aaaaaaacgg gaccctttg
//
LOCUS       DADMJB010000257         3227 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.260, whole genome shotgun sequence.
ACCESSION   DADMJB010000257 DADMJB010000000
VERSION     DADMJB010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3227
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.260"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..1010)
                     /locus_tag="JN078_004041"
     CDS             complement(<1..1010)
                     /locus_tag="JN078_004041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4049 domain-containing protein"
                     /protein_id="HAY9043041.1"
                     /translation="MKIGTVAGTNDSTTTIATNDMVQEHVTNFTKELFGYIANGIGDD
                     ISSIARTMLGEVVEKIDDWQIERFQQSIQDDKISFTIQTDHSEKYSMLSGMRAHILRR
                     DNNYQFIVTINSKNYGCSLDNTDVNWCSVVYLLNNMTVNDNANDVAVTESYKPIWNWK
                     ISQYNVFDIKFETIINPQFADRIYFSNCSPVDPTSTRPTYFGDTDGSVGAVLYALFAT
                     GYLGIMTEGENFLCQLLTIEDEVLNVLLRENFNEQLDTNINTIISNLNRRDNVLESLQ
                     PYLVINKDAVTPCTFLGDQTGDRFSNICGDQFIIDLLKRIMSINENVHVLAGNHETNC
                     NG"
     gene            complement(1272..2862)
                     /locus_tag="JN078_004042"
                     /pseudo
     CDS             complement(1272..2862)
                     /locus_tag="JN078_004042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312389.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4049 domain-containing protein"
BASE COUNT         1033 a          592 c          507 g         1095 t
ORIGIN      
        1 ttaccattgc aattcgtttc atgatttcca gctaatacat gaacattttc attgatactc
       61 attatgcgtt ttaacaaatc gatgataaat tgatcgccac agatattact aaatcgatcg
      121 ccggtttggt cgcccagaaa cgtacatggc gtgactgcgt ctttattaat aactaaataa
      181 ggctgaagac tttctaaaac attatctctt ctgttcaggt tactgattat tgtattaata
      241 ttagtgtcaa gttgctcatt aaagttttcc cttagcaata cgttgagaac ttcatcttct
      301 atagtaagca actggcaaag gaaattttct ccttcagtca tgattcccaa atatcccgta
      361 gcaaaaagcg cgtacaaaac tgcaccaact gaaccatcgg tatccccaaa ataggtcggc
      421 ctggtacttg tgggatcaac aggtgaacaa ttggagaaat agattctgtc agcgaactgg
      481 gggtttataa ttgtttcgaa tttaatatca aatacattgt attgcgatat tttccagttc
      541 cagatgggtt tgtacgactc agtaactgca acatcattag cattatcatt tactgtcata
      601 ttattaagta aataaacaac actgcaccaa ttaacatcag tattatcaag agagcaaccg
      661 taatttttac tattaattgt cacaataaac tgataattat tatccctacg tagaatatga
      721 gcacgcatgc ccgatagcat actatatttt tctgaatgat ccgtttgtat ggtaaatgaa
      781 attttgtcat cttgaataga ttgttggaac cgttctattt gccaatcatc tattttttcc
      841 acaacctcac cgagcattgt cctggcaata cttgatatat catcacctat accatttgca
      901 atatacccaa acagttcttt agtgaagttg gtaacatgct cttgcaccat atcatttgtt
      961 gcgattgtcg ttgtactgtc gttagtgcct gccacagttc caattttcat cttttacctc
     1021 atattattca ccgcgaggaa tacatagtta acattttatc ttatgacata cacctcatgt
     1081 tcgatggaaa aataattata ttttgcacaa atcattcagc cttaaagcat aatatgaaat
     1141 ttcttatttc atagcagaga aagtccctaa agattgtaga ggcgtcatca gaacatgtct
     1201 ctacaatcga ttaagaaaac ctatgaaata ctggcaggat taaaaagata taccacagca
     1261 ctcatggagt tttaatgtgg ttgaaaacaa ctaagccctg ggacaccttt tttatcacca
     1321 cgttcgttag gagctatctt ccaggaattt agccccatgg tataattatc aattttttga
     1381 tgctgatcta cccctaatcc ataatggcca tatttctgtt tagttttttt gagcgtctgt
     1441 ccacatttga agatatcttc aggttttggt ctgaaagcag tagtgttatt aaaataattg
     1501 tcatatacag gtgtggatgc tatagcattg cttctaatta gatggataaa acgatcatcc
     1561 atgtgttgtt tatgtttttt attaaatata tttgctaatt cctcaggatc aattgggtct
     1621 ttcatctgat taaatggaac ctgcaaagca cctagacaat aacattcatt ttcttcattt
     1681 cttattattc cgtgatgact gcttaaaact ttcgtttctg agtcataatt acaaacatcg
     1741 agcgttttaa ttaagttata cgtatcaccg gcagagagtt tatgatttgc tagtcgtgca
     1801 gtatagttac cattgaaatt gatttcataa tttccagcca gaacgacgtc atttttattt
     1861 atacgactat ctttattact ctccatattc cgcatagaat ttagcaaagt aaggatatat
     1921 ttatcaccaa aaatagtact gaatctatcg cctgtatgat ccccaagaaa gatacaaggg
     1981 gtaatcgcat cgccttttaa aaaaacatgt tgatgcaact tattcaagat catgtctctc
     2041 gtatctaata aagtaaagag tttttccaat tttttatttt catatgcgaa tgaagccatg
     2101 tcttcgtgtt ttaataattc acataataaa ctccccccct tttccctgat acctatatgt
     2161 cctgaaacga gcaatgcata aagtacagcg ccaactcttc catctgtatc gccaaaataa
     2221 gccgtgttgg gattttgtgg gttaatcaca ccacactgtt tataaaaatc tatttttgaa
     2281 aacacagaat taacatagct agcaaactta tccttaggaa acgtctcttt agagacatcc
     2341 caacgctagt cagctttaaa attaccgcta agaagagtaa agaaattttc aggtatgata
     2401 gaaaggccat taactttata aattatgtct gatttatctc cggagaaact aataaaataa
     2461 taaccatcct tacactcaat cgtaacggta atgggagacg acaattttat tacatggtta
     2521 ttgtctggta taattgtaaa gataaacgtg tcagtagtat tatcggcgaa actattatat
     2581 tcttgaatat ctatagatgg ctcattattg taaaaccata tttttttcta tctgagaact
     2641 atattcattt accttccagc gaccatgttg caggaaatag atgatatgca ggcctaaatc
     2701 gttatctatt tgcgaatgtt tatccagctt atcaatttca actatctttg aacgatgttt
     2761 tttatcaacc ttgccatggt gttgatgatt gttaacttga tctgaatgct tatcttgatg
     2821 gcttgaagag atgtgcttaa atatattgtg aaatactttc ataaataacc cgcaatattt
     2881 ataacttgtt agtaacaaaa taaacgatac atgtctgaaa gacatattta cgacgataca
     2941 aagtaataat acttatatat ccgatgattt taagcaccga gactatccgg tcttttacta
     3001 aataatggaa aacaatccat ccctggaaga taattgaaaa aaacaacaga ataagaatta
     3061 atcttaggat aaacatttat ttatcatggc cttttgaacg ctgaaaagta gcgctctgta
     3121 aagtaaaccc cgctatagtt atgctatgca tttgtcttta atgatatctc gtcattgtat
     3181 taacaggctg aaattatcat taatgcacat ttcaatatta gcaggga
//
LOCUS       DADMJB010000258         3223 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.261, whole genome shotgun sequence.
ACCESSION   DADMJB010000258 DADMJB010000000
VERSION     DADMJB010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3223)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3223)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.261"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..907
                     /locus_tag="JN078_004043"
     CDS             <1..907
                     /locus_tag="JN078_004043"
                     /EC_number="2.7.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pseudouridine kinase"
                     /protein_id="HAY9043042.1"
                     /translation="ANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNK
                     AWLLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDM
                     NISNAITAEYLAQHREFIQRAKVIVADCNISEEALAWILDNAANVPVFVDPVSAWKCV
                     KVRDRLNQIHTLKPNRLEAETLSGIALSGREDVAKVAAWFHQHGLNRLVLSMGGDGVY
                     YSDISGENSWSAPIKTNVINVTGAGDAMMAGLASCWVDGMPFAESVRFAQGCSSMALS
                     CEYTNNPDLSIANVISLVENAERLN"
     gene            874..1833
                     /locus_tag="JN078_004044"
     CDS             874..1833
                     /locus_tag="JN078_004044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine-5'-phosphate glycosidase"
                     /protein_id="HAY9043043.1"
                     /translation="MVSGERRTSELKISPELLQISPEVQDALKNKKPVVALESTIISH
                     GMPFPQNAQTAIEVEETIRKQGAVPATIAIIGGVMKVGLSKEEFELLGREGHNVTKVS
                     RRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQEL
                     ANTNVTVVCAGAKSILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTSSFDVSIRLDS
                     ASEIARAMAVKWQSGLNGGLVVANPIPEQFAMPEESINAAIDQAVAEAEEQGVIGKES
                     TLFLLARVAELTGGDSLKSNIQLVFNNAILASEIAKEYQRLAG"
     gene            1927..3176
                     /locus_tag="JN078_004045"
                     /pseudo
     CDS             1927..3176
                     /locus_tag="JN078_004045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416669.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
BASE COUNT          770 a          724 c          872 g          857 t
ORIGIN      
        1 ggcgaatatt gatgtcgccg gatattcaca tgaatcatta aattatgcgg attcaaatcc
       61 aggtaaaata aaatttacgc ctggtggagt cgggcgcaat attgcacaaa acctggcgtt
      121 gctggggaac aaagcctggc tactgagcgc cgtaggcagt gacttttatg gtcaatcgct
      181 gctaacgcaa accaatcaat ctggcgttta tgtcgataaa tgcctgattg tgccgggaga
      241 aaatacgtct agttatttat cattactcga taataccggt gaaatgctgg ttgctataaa
      301 tgacatgaat attagcaacg ctattacagc tgaatatctc gcacagcacc gtgaatttat
      361 tcagagggca aaggtcattg tcgcggactg taatatcagt gaagaggcac tggcatggat
      421 tctggataat gccgccaacg tacccgtatt tgtcgatccg gtttccgcat ggaaatgtgt
      481 caaagtgcgc gaccgtctaa atcagatcca cactctgaag ccaaaccgcc ttgaagcgga
      541 aaccctgagt gggattgcgc tgtcagggcg tgaagatgtg gcaaaagttg ctgcctggtt
      601 ccatcaacat ggcctgaacc gactggtatt gagcatgggc ggcgacggcg tttattacag
      661 cgatatcagc ggtgaaaata gctggtctgc gccgatcaaa accaatgtta ttaatgttac
      721 cggagcgggc gatgccatga tggcgggact tgcttcgtgt tgggtagacg gaatgccgtt
      781 tgccgaatct gttcgtttcg cacagggatg ttcgtcaatg gcgctctcct gtgaatacac
      841 caataacccc gatttatcga ttgccaacgt tatatcgtta gtggagaacg cagaacgtct
      901 gaattaaaaa tttcccctga attattacaa atttccccgg aagtgcagga cgctttaaaa
      961 aacaaaaaac cggttgtggc gctggaatcg accattattt ctcacgggat gccgttccca
     1021 caaaatgccc agaccgcaat tgaagtagaa gaaactattc gtaaacaggg cgctgtacct
     1081 gccactatcg ccattattgg cggcgtgatg aaagtgggtt taagcaaaga agaatttgaa
     1141 ttactgggtc gtgaagggca taacgtgacc aaagttagtc gtcgcgattt accttttgtt
     1201 gttgccgccg gaaaaaatgg cgcaaccact gtggcttcaa cgatgattat tgcggcgctt
     1261 gccggaatta aagtatttgc caccggggga attggtggtg tgcatcgcgg ggcggaacat
     1321 accttcgata tttctgccga tttgcaagaa ctggcaaata ctaatgtcac cgttgtttgt
     1381 gccggggcga aatctattct cgatttagga ttaaccactg agtatttaga aaccttcggt
     1441 gtgccgttaa ttggctatca gactaaagcg ctgcctgcgt ttttctgccg taccagctcg
     1501 tttgacgtca gtattcgtct cgacagcgcc agtgaaattg cccgtgcaat ggcggtgaaa
     1561 tggcaaagcg ggctgaacgg tggcctcgtg gtagcgaacc cgatcccgga acagtttgcg
     1621 atgccggagg aatctatcaa tgcagccata gatcaagccg tcgccgaagc cgaagagcag
     1681 ggcgttattg gtaaagaaag tacactgttc ctgctggcgc gcgttgctga gctgaccggc
     1741 ggtgacagcc tgaaatccaa tatccagctg gtattcaaca acgccattct ggcgagtgaa
     1801 attgccaaag aataccagcg tctcgcgggt taatttccga cgggcagaaa gccgtcgccc
     1861 gtactcatca agcataccaa aacctggcgc tgacgccggg tttactggca tgaagggaaa
     1921 atcattatgg atataatgag aagtgttgtg gggatggtgg tgttactggc aatagcattt
     1981 ctgttgtcag tgaataaaaa gagcatcagt ttgcgcacgg ttggagccgc actgctgctg
     2041 caaatcgcta ttggtggcat catgctctac ttcccaccgg gaaagtgggc agtagaacag
     2101 gcggcattag gcgttcataa agtgatgtct tacagtgatg ccggtaggcc ttcatttttg
     2161 gttcgctggt tgggccgaaa atggatgtcc tgtttgacgg tgcgggtttt atcttcgcct
     2221 ttcgcgtact tccggcgatt attttcgtta ctgcgctcat cagtctgctg tactacattg
     2281 gcgtgatggg gctgctgatt cgcatccttg gcagcatttt ccagaaagct cttaacatca
     2341 gcaaaatcga atcttttgtc gcagtcacaa ctattttcct cgggcaaaat gagatcccgg
     2401 cgatcgttaa accgtttatc gatcgcatga atcgcaacga gttgtttacc gcaatttgta
     2461 gcgggatggc gtccattgct ggttcgatga tgattggtta tgccggaatg ggcgtaccaa
     2521 ttgactacct gttagcggca tcgctgatgg cgatcccagg tggtattttg tttgcacgta
     2581 ttcttagccc ggccaccgag ccttcgcagg tcacatttga aaatctgtcg ttcagcgaaa
     2641 cgccgccaaa aagctttatc gaagcggcgg cgagcggtgc gatgaccggg ctgaaaatcg
     2701 ccgctggtgt agcgacggtg gtaatggcat ttgtcgcaat tattgcgctg atcaacggca
     2761 ttatcggcgg aattggtggc tggtttggtt tcgccaatgc ctctctggaa agtatttttg
     2821 gctatgtgct ggcaccgctg gcgtggatca tgggtgtgga ctggagtgat gccaatcttg
     2881 cgggtagcct gattgggcag aaactggcga ttaacgaatt cgtcgcttac ctgagtttct
     2941 ccccatacct gcaaacgggc ggcacgctgg aagtgaaaac cattgcgatt atctcctttg
     3001 cgctttgtgg ttttgctaac tttggttcta tcggtgttgt cgttggcgca ttttcggcta
     3061 tttcgccaaa acgcgcgccg gaaatcgccc agcttggttt acgggcgctg gcagcagcaa
     3121 cgctttccaa cctgatgagt gcgactattg ccgggttctt tattggttta gcttgagttt
     3181 cattgccgga tgtacgcgct tattaagcgt tgcatccggc aat
//
LOCUS       DADMJB010000259         3195 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.262, whole genome shotgun sequence.
ACCESSION   DADMJB010000259 DADMJB010000000
VERSION     DADMJB010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3195)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3195)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3195
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.262"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            199..939
                     /locus_tag="JN078_004046"
     CDS             199..939
                     /locus_tag="JN078_004046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HAY9043044.1"
                     /translation="MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPV
                     YIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQ
                     LKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTG
                     ALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVN
                     GRYVVSKPLSHEVVQPQLASNYTLPEAK"
     gene            complement(910..1677)
                     /locus_tag="JN078_004047"
     CDS             complement(910..1677)
                     /locus_tag="JN078_004047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HAY9043045.1"
                     /translation="MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGK
                     GCRTFKDPQPSFNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRN
                     WTYAHNGQLTGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIA
                     SLADELRQKGVFNMLLSDGRYVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTT
                     PNDVVTVIATQPLTGNETWQKIMPGEWRLFCLGERVV"
     gene            complement(1883..2461)
                     /gene="lpcA"
                     /locus_tag="JN078_004048"
     CDS             complement(1883..2461)
                     /gene="lpcA"
                     /locus_tag="JN078_004048"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017458774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HAY9043046.1"
                     /translation="MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAG
                     GKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFS
                     RYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEI
                     RVPHFGYADRIQEIHIKVIHILIQLIEKEMVK"
     gene            2701..>3195
                     /locus_tag="JN078_004049"
     CDS             2701..>3195
                     /locus_tag="JN078_004049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414756.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HAY9043047.1"
                     /translation="MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWS
                     AWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDL
                     FQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLK
                     EHRFF"
BASE COUNT          765 a          810 c          819 g          801 t
ORIGIN      
        1 atcttaggaa ataaatgata catgcgcttt tcggactatt gaaaactgcc cctgtgctaa
       61 atttgtaaac cctgcgccga caggcttgcg taaaactctt ttggtgataa tgtgagcctt
      121 ccaaatccag actattccga tttgggatcc attttgccgt cctggcgtgt gtaaccgttt
      181 tatcaaggaa taagcagtat gcgtaaaatc gcattaattc ttgcgatgtt gttgatcccg
      241 tgcgtttcgt ttgccggttt gctgggcagc agtagctcga ccacgccagt gagcaaagag
      301 tataagcagc agttgatggg atcccctgtc tacatccaga tcttcaagga agaacgtacg
      361 ctcgatctct acgtcaaaat gggcgagcaa tatcagctgc tcgacagtta taaaatctgt
      421 aaatattccg gcggcttagg gccaaaacag cgtcagggcg atttcaaaag cccggaaggg
      481 ttttatagcg tccagcgtaa tcagttaaaa ccagacagcc gttactacaa agcgattaat
      541 attggtttcc ccaatgccta tgaccgtgcg catggttatg aagggaaata cctgatgatc
      601 cacggcgatt gtgtttccat cggctgctac gcaatgacca atcagggtat tgatgagatc
      661 ttccagttcg ttactggtgc gctggtgttt ggtcagccga gcgtgcaagt gagtatttac
      721 ccgttccgca tgaccgacgc caatatgaag cgccataaat attccaactt taaggacttc
      781 tgggagcaac tgaagccggg ttacgactac tttgagcaaa cccgtaagcc accgaccgtt
      841 tctgtggtca atggtcgtta cgtggtcagc aagccgttaa gccacgaagt tgtgcagcca
      901 caactggcat caaactacac gctccccgag gcaaaataag cgccattcgc ctggcataat
      961 cttttgccag gtttcattgc ccgtcagcgg ctgtgtcgca atcaccgtga ccacatcatt
     1021 cggtgtggtc tgcgagctga agtcgatttc tacatcctga tccagcagcg ttgccacgcc
     1081 aaacggtgcg cggcgggtga tccagtgcag attcgtcgag caatacgcca ttacatagcg
     1141 cccatccgaa agcagcatgt tgaaaacgcc cttctgccgc agttcgtccg ccagtgaagc
     1201 gatatattta aacactgctg ccatgttgcc cggcgtgcgc gggtaacgct gcgttaattt
     1261 atgcagcagc cagcagaagg ctttttcgct gtcggtttcg cctaccgggc ggaagttgcc
     1321 ggtttccagt gatttgtagc ccgtcagttg tccgttatgg gcataagtcc agttacgccc
     1381 ccataactcg cgggtaaatg ggtgagtatt ttccaacgcc acctcgcccc gattagcctg
     1441 gcgaatatga gccaccaccg aacaggattt tatcgggtag tcctggacaa gtttggcgat
     1501 gggggaatta aagctgggtt gtggatcttt aaatgtgcga cagcctttac cttcgtaaaa
     1561 ggtaatgccc cagccatctt tatgtggccc ggttccacca ccacgctgta caagtccggt
     1621 gaaactaaag cagatatcgg tagggacgtt ggcgctcatc ccgagcaatt cgcacatggg
     1681 taacctccac aacagcggga gcgcatggcc cccggcgaag attgatttaa gaattttcag
     1741 gtcggatgcg gcgtaaacga attattcggc ctacggttcg cgtacagatt tgtaggcatg
     1801 ataagacgcg tcagcatcgc atcaggcatc agcgcacaag tgccggatgc ggcgtaaacg
     1861 ccttatccgg cctacgccag acttacttaa ccatctcttt ttcaattaac tggatcagga
     1921 tatggatcac tttaatgtga atctcctgaa tgcggtcggc ataaccaaag tgcggtacgc
     1981 gaatttcgat atccgccgtg ccagccattt tgccgccgtc tttaccggtc agggtgatca
     2041 ctttcatccc cttctcacgc gccgctgcga tcgctttgat cacgtttgca gagttaccgg
     2101 aggtggagat ccccagcagt acatcgcctt cgcgacctac cgcttcaacg tagcgggaga
     2161 aaatatcatt gaaaccgaaa tcattaccga cgcaggaaat atgactaacg tcagaaatag
     2221 caatcgccgg gtagcccgga cggttttcac ggtagcgacc ggtcaactct tcggcaaagt
     2281 gcatagcgtc gcaatgggaa ccgccgttgc cgcaggaaag cactttgcca ccggctttaa
     2341 agctgtctgc taacaggacc gccgcgcgct gaatggcgtg aatattggcg tcatctttta
     2401 aaaagttagc cagcgtttcc gccgcttcgt tcagttcgtt acgaataaga tcttggtaca
     2461 tgaggatatc cttcagcata aatgtaatag acaaaatgca gtgtaccgga taccgccaaa
     2521 agcgagaagt acgggcaggt gctatgacca ggactttttg acctgaagtg cggataaaaa
     2581 cagcaacaat gtgagctttg ttgtaattat attgtaaata cattgctaaa tgtatttaca
     2641 tccactacaa ccatatcatc acaagtggtc agacctccta caagtaaggg gcttttcgtt
     2701 atgatgattt tgagtattct cgctacggtt gtcctgctcg gcgcgttgtt ctatcaccgc
     2761 gtgagcttat ttatcagcag tctgattttg ctcgcctgga cagccgccct cggcgttgct
     2821 ggtctgtggt cggcgtgggt actggtgcct ctggccatta tcctcgtgcc atttaacttt
     2881 gcgcctatgc gtaagtcgat gatttccgcg ccggtatttc gaggtttccg taaggtgatg
     2941 ccgccgatgt cgcgcactga gaaagaagcg attgatgcgg gcaccacctg gtgggagggc
     3001 gacttgttcc agggcaagcc ggactggaaa aagctgcata actatccgca gccgcgcctg
     3061 accgccgaag agcaagcgtt tctcgacggc ccggtagaag aagcctgccg gatggcgaat
     3121 gatttccaga ttactcatga gctggcggat ctgccgccgg agttgtgggc gtaccttaaa
     3181 gagcatcgct tcttc
//
LOCUS       DADMJB010000260         3171 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.263, whole genome shotgun sequence.
ACCESSION   DADMJB010000260 DADMJB010000000
VERSION     DADMJB010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3171)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3171)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3171
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.263"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            344..503
                     /locus_tag="JN078_004050"
                     /pseudo
     CDS             344..503
                     /locus_tag="JN078_004050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001066419.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(721..2811)
                     /gene="iha"
                     /locus_tag="JN078_004051"
     CDS             complement(721..2811)
                     /gene="iha"
                     /locus_tag="JN078_004051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional siderophore receptor/adhesin Iha"
                     /protein_id="HAY9043048.1"
                     /translation="MRITTLASVVIPCLGFSASSIAAAEDVMIVSASGYEKKLTNAAA
                     SVSVISQEELQSSQYHDLAEALRSVEGVDVESGTGKTGGLEISIRGMPASYTLILIDG
                     VRQGGSSDVTPNGFSAMNTGFMPPLAAIERIEVIRGPMSTLYGSDAMGGVVNIITRKN
                     ADKWLSSVNAGLNLQESNKWGNSSQFNFWSSGPLVDDSVSLQVRGSTQQRQGSSVTSL
                     SDTAATRIPYPTESQNYNLGARLDWKASEQDVLWFDMDTTRQRYDNRDGQLGSLTGGY
                     DRTLRYERNKISAGYDHTFTFGTWKSYLNWNETENKGRELVRSVLKRDKWGLAGQPRE
                     LKESNLILNSLLLTPLGESHLVTVGGEFQSSSMKDGVVLASTGETFRQKSWSVFAEDE
                     WHLTDALALTAGSRYEHHEQFGGHFSPRAYLVWDVADAWTLKGGVTTGYKAPRMGQLH
                     KGISGVSGQGKTNLLGNPDLKPEESVSYEAGVYYDNPAGLNANVTGFMTDFSNKIVSY
                     SINDNTNSYVNSGKARLHGVEFAGTLPLWSEDVTLSLNYTWTRSEQRDGDNKGAPLSY
                     TPEHMVNAKLNWQITEEVASWLGARYRGKTPRFTQNYSSLSAVQKKVYDEKGEYLKAW
                     TVVDAGLSWKMTDALTLNAAVNNLLNKDYSDVSLYSAGKSTLYAGDYFQTGSSTTGYV
                     IPERNYWMSLNYQF"
BASE COUNT          795 a          836 c          732 g          808 t
ORIGIN      
        1 gacctctcag taaatatcaa tacggttctg gcgagccgct tacgtgcagc agtcttatcc
       61 ggcagtttaa aggggaggac ggagaccaat gaggcactgg agcagattca gtgcagaggt
      121 gacctgcttt atcaaactta attgtgacaa aatggcgatt gagaaggtgc aattgactta
      181 tccggattcg gtcgtggcga ggtggtgccc ctgcattctg ctaaccgggt tatgagccag
      241 gagtcagcga tagacaaagg gacttatctg accgggcccc ggaaaaatgg cgggagagaa
      301 tgataccttc ctgctgacga gaccggactt tgagatgacg agcgatagtg cggcagtgat
      361 gtacagcctg atcggtagct gcaaaactta acggaatcga gccggaaacg tggctacgcc
      421 acgtgatcag tgtaatcaac acctggcctg ccaaccgcat gaaagagttg ttgccctgga
      481 acgtcactct ctctgtaaac taatttttac cccacgtcct tcacggtgcg cttacactct
      541 ggacaagtat gtaaatgata agttaaaaat aatccgtgca tttcctgtga cgatattagt
      601 tgttggtaac gaaatctcat tagcggatcg gaaatgcact taacctaata cgttgccact
      661 gttccgccag gagttgcagt ggcaacgtat tctaccgtca gtgatagcgt tttgttatta
      721 tcagaactga tagttcagcg acatccagta atttcgctca ggtatcacat atcctgttgt
      781 tgatgatccc gtctggaagt aatcaccggc atacagcgta ctcttaccgg cactgtacag
      841 gctcacgtca ctgtaatcct tgttgagcag gttattcacc gcagcattca gcgtcagggc
      901 atccgtcatc ttccaggaca gacctgcatc caccaccgtc caggctttca ggtattctcc
      961 tttctcatca tacactttct tctgtacagc gctcagtgac gaataattct gggtgaaacg
     1021 tggtgttttc ccgcgataac gggcacccag ccatgatgcc acctcttcgg tgatctgcca
     1081 gttcagtttc gcattcacca tgtgttcagg ggtataactc agcggcgcac ctttgttatc
     1141 accatcacgt tgttcacttc gggtccaggt gtaattcagt gacagcgtga catcctctga
     1201 ccacagcggc aatgtgccgg caaattccac accgtgcaac cgggcctttc cgctgtttac
     1261 atagctattg gtgttatcat ttatggaata agagacaatc ttgttggaga agtcagtcat
     1321 aaaacctgtg acattggcat tcagaccggc ggggttatcg taatacaccc cagcctcata
     1381 actgacgctc tcttccggct tcaggtcggg gttaccaagt agatttgttt ttccctgccc
     1441 ggacacacca ctaatccctt tatgtagctg ccccattctg ggtgccttat atcccgtggt
     1501 cacaccgcct ttcagcgtcc aggcatctgc cacatcccag accagatatg cacgcggact
     1561 gaagtgtccc ccgaattgct catgatgttc atagcggctg cccgcagtca gcgcaagtgc
     1621 atccgtgaga tgccactcat cctcagcaaa taccgaccag cttttctgcc ggaaagtttc
     1681 acctgtgctg gcaaggacaa ctccgtcttt catggacgag ctctgaaact cgccccccac
     1741 cgtaaccaga tgagattctc ccagaggggt aagcagtaat gaattcagga taaggttcga
     1801 ttccttaagc tcccgcggct gaccggcaag cccccatttg tcgcgcttca gtacactgcg
     1861 tacgagctca cgacctttat tttctgtctc gttccagttc agatacgatt tccatgttcc
     1921 gaaggtgaaa gtatgatcat agccagctga aattttgttc cgctcatagc gcagggtccg
     1981 gtcatatccc cccgtcagac tccccagttg cccatcccgg ttatcataac gctgccgggt
     2041 ggtatccata tcaaaccaga gcacatcctg ctccgacgcc ttccagtcaa gacgtgcacc
     2101 aagattataa ttctgtgact ccgtgggata aggaatacgc gtggctgctg tatcgctcag
     2161 tgatgtgacc gatgagccct gacgctgttg tgtgctaccg cgtacctgca ggctgacaga
     2221 atcatccaca agggggccac tgctccagaa attaaactgg ctgctgttac cccatttgtt
     2281 gctttcctgc agattcagcc ctgcattgac ggaagagagc catttgtctg cattctttct
     2341 ggtaatgata ttcaccacac cgcccatcgc atcagagcca tacagtgtgg acatcggccc
     2401 cctgataacc tcaatacgct caatggcggc cagagggggc atgaacccgg tattcatggc
     2461 agaaaaaccg ttgggagtca cgtcactgct tccgccctga cgaacaccat caatcagtat
     2521 cagcgtgtaa ctggctggca ttcctcggat gctgatttcc agcccaccgg ttttacccgt
     2581 accactttca acatccacac cctctactga tctcagagcc tccgccagat cgtggtactg
     2641 gctggactgc aattcctcct ggctaatcac agaaacactg gcggctgcgt tagtcagctt
     2701 tttctcatag ccggatgccg agacaatcat cacatcctct gcagcagcta tgctgctggc
     2761 tgaaaatccg agacagggaa tgactacgga agccagagtg gttattcgca tattactaat
     2821 ctccgatcat gttaaccggc aagacaatac acaaacacaa acaataatga gaataattta
     2881 tatttgcctt ttacaaaaaa taaagattat taacaaaact aaatataaat aacaactgcc
     2941 tcggcatgcc agttaacagc tatccgtatg gcgtgttcgg ttttgcgaat aaaaaatggt
     3001 tactgtagaa gcggatttcc accacatgtc aaccatgaat ggtcagtggt gcgagacgac
     3061 tgggatgatt tggtcgatga cttcttccgg tgaatactga tagaaacatt gaaatattgt
     3121 aagagaaagc gttcaaaatt ctgtggcacg tgaaaaattc tacagcgtca t
//
LOCUS       DADMJB010000261         3097 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.264, whole genome shotgun sequence.
ACCESSION   DADMJB010000261 DADMJB010000000
VERSION     DADMJB010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3097
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.264"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..923)
                     /gene="curA"
                     /locus_tag="JN078_004052"
     CDS             complement(<1..923)
                     /gene="curA"
                     /locus_tag="JN078_004052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415966.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent curcumin/dihydrocurcumin
                     reductase"
                     /protein_id="HAY9043049.1"
                     /translation="MGQQKQRNRRWVLASRPHGAPVPENFRLEEDDVATPGEGQVLLR
                     TVYLSLDPYMRGRMSDEPSYSPPVDIGGVMVGGTVSHVVESNHPDYQPGDWVLGYSGW
                     QDYDISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATG
                     PVGATVGQIGKLKGCRVVGGAGGAEKCRHAIEVLGFDVCLDHHAGDFAEQLVKACPKG
                     IDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKR
                     IRLQGFIIAQDYGHRIHEFQKEMGQWVKEDK"
     gene            1104..1622
                     /gene="mddA"
                     /locus_tag="JN078_004053"
     CDS             1104..1622
                     /gene="mddA"
                     /locus_tag="JN078_004053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-methionine sulfoximine/L-methionine sulfone
                     acetyltransferase"
                     /protein_id="HAY9043050.1"
                     /translation="MSIRFARKADCAAIAEIYNHAVLYTAAIWNDQTVDADNRIAWFE
                     ARTIAGYPVLVSEEDGVVTGYASFGDWRSFDGFRHTVEHSVYVHPDHQGKGLGRKLLS
                     RLIDEARDSGKHVMVAGIESQNQASLHLHHSLGFVVTAQMPQVGTKFGRWLDLTFMQL
                     QLDERTEPDAIG"
     gene            1619..2068
                     /locus_tag="JN078_004054"
     CDS             1619..2068
                     /locus_tag="JN078_004054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HAY9043051.1"
                     /translation="MNQSLTLAFLIAAGIGLVVQNTLMVRITQTSSTILIAMLLNSLV
                     GIVLFVSILWFKQGMAGFGELVSSVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAV
                     LVASQLIGGLMLDIFRSHGVPLRALFGPICGAILLVVGAWLVARRSF"
     gene            complement(2069..2302)
                     /locus_tag="JN078_004055"
     CDS             complement(2069..2302)
                     /locus_tag="JN078_004055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcY family protein"
                     /protein_id="HAY9043052.1"
                     /translation="MSHLDEVIARVDAAIEESVIAHMNELLIALSDDAELSREDRYTQ
                     QQRLRTAIAHHGRKHKEDMEARHEQLTKGGTIL"
     gene            complement(2388..2561)
                     /locus_tag="JN078_004056"
     CDS             complement(2388..2561)
                     /locus_tag="JN078_004056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415962.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GhoT/OrtT family toxin"
                     /protein_id="HAY9043053.1"
                     /translation="MSLYQHMLVFYAVMAAIAFLITWFLSHDKKRIRFLSAFLVGATW
                     PMSFPVALLFSLF"
     gene            2756..2851
                     /gene="yncL"
                     /locus_tag="JN078_004057"
     CDS             2756..2851
                     /gene="yncL"
                     /locus_tag="JN078_004057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response membrane protein YncL"
                     /protein_id="HAY9043054.1"
                     /translation="MNVSSRTVVLINVFAAVGLFTLISMRFGWFI"
BASE COUNT          752 a          792 c          723 g          830 t
ORIGIN      
        1 attttatcct ctttcaccca ttgccccatc tccttctgaa actcatggat gcggtgacca
       61 taatcctgag cgataataaa cccttgcaag cgaatacgtt ttttcagcac cgttgccatc
      121 aacaggggta aacgatccgg accgggtggt agctctgtag cgttatagct gctcactaag
      181 ccacaaacgg gaatgcgcgc agatgtatta agtaatggta gcactgcatc aaatacctta
      241 ccgcccacgt tttcataata gatatcaata ccttttgggc acgctttcac cagttgttcg
      301 gcaaaatcac ccgcgtggtg atcaagacaa acatcgaagc ccagcacctc gatagcatgg
      361 cggcattttt ccgcgccacc ggcccccccc accaccctgc aacctttaag tttgccgatt
      421 tgccccaccg ttgctcccac aggacctgtc gccgcagcta ccaccaacgt ttcgccctct
      481 ttaggctgac cgatatccag cagccccata taagcggtaa agcctggcat ccccagcaca
      541 cccagcgacc acgatggatt ttgcggatga tcgccaagtt tcaccagatc atcaccactg
      601 gatatgtcat agtcctgcca tccactgtag cccagcaccc agtcgccagg ctgataatca
      661 ggatgattcg actccacaac atggctcacc gtgccgccga ccatcacgcc gccaatatca
      721 acaggcggtg aataagatgg ctcatcgctc atacgtccac gcatatacgg gtccagggac
      781 aaataaactg tgcgcagtaa cacctgtcct tcacccggtg tggcgacatc atcttcttca
      841 agacggaaat tctccggaac cggtgcgcca tgtggacgcg aggccagaac ccaacgtcga
      901 ttacgctgct tttgttgccc cataatgctc tcctgtgctt ttggcatgaa tccatcaata
      961 gtagcaggct cacgggattg gttttgtttg cagccgtcac atcccctctg caacacgcaa
     1021 taatttcatc gaggaatccg ttgcttcggg ctgttttcga tagtattgat aacatcatca
     1081 tcattatttt atcgaggcca gacatgtcca tccgttttgc ccgcaaagcc gattgtgctg
     1141 ccattgcgga aatttataac cacgccgtgt tgtatacggc ggctatctgg aatgaccaaa
     1201 cggttgatgc agataaccgc attgcctggt ttgaagcgcg gaccatagca ggttatccgg
     1261 tgctggtaag tgaagaagat ggcgtagtga cgggatatgc ctcgtttggc gactggcgta
     1321 gtttcgatgg ttttcgccat accgtggaac attcggttta tgtccatccc gatcatcagg
     1381 gcaaaggtct ggggcgtaaa ttgttaagcc gattgattga tgaagcgcgg gatagcggga
     1441 agcatgtcat ggtcgccggg atcgaatcgc aaaatcaggc ctcgctgcat ctgcaccatt
     1501 cgctgggatt tgtcgtcacc gcacaaatgc cgcaggtggg cactaaattt gggcgctggc
     1561 tggatctgac atttatgcag ttgcaactcg acgaacgcac tgaaccggac gcgattggat
     1621 gaatcagtcg ctcacccttg cttttttgat tgccgccgga attggtctgg tagtccagaa
     1681 cacgctgatg gtgcgcatca cccagacctc ctctaccatt ctcatcgcca tgttgctgaa
     1741 ctcactggtg gggattgtgc tctttgtttc tattttatgg tttaaacaag gcatggcggg
     1801 gtttggcgaa ctggtgtcca gcgtgcgctg gtggacactt atacccggct tgctgggatc
     1861 gttttttgtc ttcgccagta tcagcggata tcagaatgtg ggagcggcga caactattgc
     1921 agtactggtc gccagccagc taattggcgg tctgatgctg gatatcttcc gcagtcatgg
     1981 cgtaccacta cgggcgttgt tcggcccaat ttgtggcgca attttacttg tggttggcgc
     2041 ctggttggta gccagacgct cattttaatc agaggatggt gccgcctttg gttaactgtt
     2101 cgtggcgcgc ttccatatct tctttatgct tgcgaccgtg atgagcaata gcggtgcgca
     2161 aacgctgctg ctgggtgtag cgatcttccc gacttaactc cgcgtcatcg ctcagggcga
     2221 ttaataattc gttcatatgg gcaatgacgc tctcttcaat cgcggcatcc acgcgcgcga
     2281 tgacttcatc cagatgcgac atactttctc cttaaccact tgtgaaattt atcgattcat
     2341 ccaaatgata taagtctgcg tggtgccgtc aagccagtga gtaagattta aaacagtgaa
     2401 aacaacagcg ccaccgggaa actcatcggc catgttgccc ccaccagaaa ggcgcttaag
     2461 aaacggatgc gtttcttatc gtgagaaaga aaccaggtga taagaaatgc gattgctgcc
     2521 ataaccgcat aaaaaacaag catatgttga tagagagaca tgtacgggcg tccagccaga
     2581 tgaataaaac gcgcgcaaat atgcgtcatt ttttgacgtg catcaagttt tttcaccagt
     2641 ttgagaaaaa atcatcaaac agcaacttgc ccttatccat cttcagaatg agtattattg
     2701 cggattttct taacccgtac tatacacata ggggcaatga taaaaggtgg caaaaatgaa
     2761 tgtttccagt agaactgtag tactgataaa tgtctttgct gctgttggtt tgtttactct
     2821 tatctctatg agatttggct ggtttatttg atgtagtgat tttgcacgca gcacgtactg
     2881 tcagagaaat caactctctg acagtacgca agatcttctc atactctcca ggtttacaac
     2941 attatcctta atatttactt ctttttgctg gcatctacat tgaaatgagt agaaaacatc
     3001 cccctactgt cgtctataca aacagcttac tgattcaaac ggaatcttgt tttcacattt
     3061 ttctatcatg aatactttat acgcgcggga gtctata
//
LOCUS       DADMJB010000262         3086 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.265, whole genome shotgun sequence.
ACCESSION   DADMJB010000262 DADMJB010000000
VERSION     DADMJB010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3086)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3086)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3086
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.265"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..190)
                     /locus_tag="JN078_004058"
     CDS             complement(<1..190)
                     /locus_tag="JN078_004058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF898 family protein"
                     /protein_id="HAY9043055.1"
                     /translation="MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLP
                     WALMKCKRYLYANMEVNGQ"
     gene            383..885
                     /locus_tag="JN078_004059"
                     /pseudo
     CDS             383..885
                     /locus_tag="JN078_004059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026287.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
     gene            complement(931..1347)
                     /gene="rraB"
                     /locus_tag="JN078_004060"
     CDS             complement(931..1347)
                     /gene="rraB"
                     /locus_tag="JN078_004060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HAY9043056.1"
                     /translation="MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLE
                     TLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAE
                     KFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH"
     gene            1509..2513
                     /gene="argF"
                     /locus_tag="JN078_004061"
     CDS             1509..2513
                     /gene="argF"
                     /locus_tag="JN078_004061"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HAY9043057.1"
                     /translation="MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLT
                     GKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYD
                     GIQYRGYGQEIAETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLV
                     YAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTED
                     VAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLP
                     AFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK
                     "
     gene            complement(2585..>3086)
                     /locus_tag="JN078_004062"
     CDS             complement(2585..>3086)
                     /locus_tag="JN078_004062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001600920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HAY9043058.1"
                     /translation="SRKLQELIWDKLVAYVNDFNLSNQEKSRLILRLFDDVKLLFNEV
                     PVSILVNDIFLKDFFMKQPDFAKWYFYQLLKKYEGEQLYLNELGYVYGNEEKTNEIVN
                     NNPGYVVEIFEEKMGNELKIRTRMMEILRDGKINICEYINKEQLEKLNPPEDLRIAIK
                     KLGWNN"
BASE COUNT          864 a          702 c          659 g          861 t
ORIGIN      
        1 gttgtccgtt aacttccata ttagcataga gataacgctt acatttcatt aatgcccatg
       61 gtaaatagat acctagcgtt ataatcgtta acaacacatt caccacacaa ataagaaaat
      121 atctctcacc tgtaccatga aaaacaaacg aatgggacgg aacatccatt tcattaataa
      181 cttgagccat aaaaattccc tgaattaaaa aatccattga tataatttat atatacagac
      241 agtaaaatgt tctgccacgt tacaatactc ttatcagtaa taggctggca aaaactttat
      301 tgctttataa gatgcttgcg cacgtaagaa gagagtggta ttaaacaaat gtataattac
      361 tttattttta ttgggttaaa ctatgaataa cattgcgccg caatcacctg taatgcgtcg
      421 cctgacgcta caggataatc ctgctattgc ccgcgtcatt cgtcaggtat ccgccgaata
      481 cggtcttacc gctgataaag gctacaccgt cgccgatccg aatcttgacg aactgtatca
      541 agtgtatagt cagccgggtc atgcatattg ggtggttgag tacgagggtg aagtggtcgg
      601 cggcggtggg attgcgccat tagcaggtag tgaatcggac atttgcgaac tgcaaaagat
      661 gtattttctt ccggctattc gcggtaaagg gctggcgaaa aaactggcct taatggcgat
      721 ggagcaggca cgagagatgg gcttcaaacg ctgctatctg gaaacgaccg ctttttaaag
      781 gaagccattg cgctttatga gcatttgggc tttgagcata tcgactatgc acttggctgc
      841 acgggccatg ttgattgtga agtgcggatg ttgcgcgaac tctaaaaaaa tgcccgctag
      901 tgtgtgctat cgggcatttt aatcaattaa ttagtggcga accccgtcat cgtcttcatc
      961 gacaaaatct tcatcgtcgc cgtcttcgcc attaggatct tcaaaataag tgccccaacc
     1021 gtcgtactca acgtcaaatt tctccgccaa tgtcatcagt tgttcaacct gggcatcgat
     1081 cagatcggca ttcaacgcgc actcgctgag gatgtcgcag caaatcacga tatcaccatc
     1141 ttcaacttcc agctcttctg gatcggtcac ttcgtaaccg agtttaaacg cttcaactgc
     1201 tgctttttcc agggtttcca gatcgtctgc ggaaagatgg tgttcgatgg tgtacagcgc
     1261 gtccggatcg ctgccatctt ccagtaattc ttcaataatc aaacgagttt cttcacgctg
     1321 ttcttccagt tgttccgggt ttgccatggc tcattcctct taatgtcctg ccgatactct
     1381 tattgtcaca taccactgac attgcctcca cctttgtgac aaagatttat gcttcagact
     1441 tgcaaatgaa taatcatcca tataaattga attttaattc attgaggcgt tagccacagg
     1501 agggatctat gtccgggttt tatcataagc atttcctgaa attactcgat ttcacgccag
     1561 ctgaactcaa cagcctgctg cagttagccg cgaagctgaa agccgataag aaaagcggca
     1621 aagaagaagc caaactcact ggtaaaaaca tcgcgctcat cttcgaaaaa gactcgaccc
     1681 gtacccgatg ctctttcgaa gttgccgcat atgaccaggg tgctcgcgtt acttatctcg
     1741 gcccaagcgg cagtcagatt ggtcataaag agtcgattaa agacactgcc cgcgtgctgg
     1801 gtcgcatgta tgacggtatt cagtatcgcg gctatggtca ggagattgcc gaaacactgg
     1861 cggaatacgc tggcgtgccg gtatggaacg gcctgaccaa tgagtttcac cccacgcagt
     1921 tgctggcgga tctcctcacc atgcaggagc atttacccgg taaagcattc aacgaaatga
     1981 cgctggtcta tgcaggtgac gcacgtaaca acatgggcaa ttcgatgctc gaagctgcgg
     2041 cgcttaccgg tctggatttg cgtctggtcg cgccacaggc atgctggccg gaagctgcgc
     2101 tggttacgga atgccgcgcc ctggcacagc aaaatggcgg gaatattacg ctgacggaag
     2161 atgtagccaa aggagttgaa ggtgctgact ttatctatac cgatgtatgg gtgtcgatgg
     2221 gggaagcaaa agagaaatgg gcagaacgga ttgcattact gcgtgattat caggtgaaca
     2281 gcaagatgat gcagttgacc ggtaacccgg aggtcaaatt cctccactgc ctgcccgcgt
     2341 ttcatgacga ccagacgacg cttggtaaga aaatggcgga agagtttggc ctacatggcg
     2401 gaatggaagt gactgatgag gtcttcgaat ctgccgccag cattgttttt gatcaggcgg
     2461 aaaaccgcat gcataccatc aaagcggtga tggtcgcgac gctcagtaaa taattgatat
     2521 cgcaataaag atgccgggaa atacaaaaac atcccggcat cacattattt tatgcagtaa
     2581 tagttcaatt attccacccc aattttttta ttgctatacg taaatcttcc ggaggattta
     2641 atttttctaa ctgttcttta ttaatatatt cacatatatt tattttccca tcccggagga
     2701 tttccatcat tcttgttcta atttttaatt cattacccat cttttcttca aaaatctcaa
     2761 cgacataacc cggattgtta tttacaattt catttgtttt ttcttcatta ccataaacat
     2821 atcctaactc attaagatac agctgttcgc cctcatactt cttaagtaat tgatagaagt
     2881 accacttcgc aaaatcaggt tgcttcatga aaaaatcctt caaaaaaata tcatttacta
     2941 aaatgctgac aggcacttca ttaaatagca acttaacatc atcaaataac cttagtatta
     3001 agcgtgattt ttcttgattg cttaagttaa aatcattgac atatgcaacc aacttatccc
     3061 aaatcaattc ctgtaattta cggcta
//
LOCUS       DADMJB010000263         3065 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.266, whole genome shotgun sequence.
ACCESSION   DADMJB010000263 DADMJB010000000
VERSION     DADMJB010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3065)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3065)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3065
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.266"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(49..233)
                     /locus_tag="JN078_004063"
                     /pseudo
     CDS             complement(49..233)
                     /locus_tag="JN078_004063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311258.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
     gene            complement(395..469)
                     /locus_tag="JN078_004064"
     tRNA            complement(395..469)
                     /locus_tag="JN078_004064"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(434..436),aa:Arg,seq:cct)
     gene            complement(545..1477)
                     /locus_tag="JN078_004065"
     CDS             complement(545..1477)
                     /locus_tag="JN078_004065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HAY9043059.1"
                     /translation="MDNDKIDQHSDEIEVESEEKERGKKIEIDEDRLPSRAMAIHEHI
                     RQDGEKELERDAMALLWSAIAAGLSMGASLLAKGIFHVELEGVPGSFLLENLGYTFGF
                     IIVIMARQQLFTENTVTAVLPVMQKPTMSNVGLLMRLWGVVLLGNILGTGIAAWAFEY
                     MPIFNEETHDAFVKIGMDVMKNTPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIIL
                     MTWLIALGDTTHIVVGSVEILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMS
                     HAQIRNDMSNKRKAEARQKAERAENIKKNDKNPA"
     gene            1771..2526
                     /gene="mlaA"
                     /locus_tag="JN078_004066"
     CDS             1771..2526
                     /gene="mlaA"
                     /locus_tag="JN078_004066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding lipoprotein MlaA"
                     /protein_id="HAY9043060.1"
                     /translation="MKLRLSALALGTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNF
                     NVLDPYIVRPVAVAWRDYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTR
                     FFLNTILGMGGFIDVAGMANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRD
                     DGGDMADGLYPVLSWLTWPMSVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYF
                     QRHDFIANGGELKPQENPNAQAIQDDLKDIDSE"
     gene            complement(2708..3043)
                     /locus_tag="JN078_004067"
     CDS             complement(2708..3043)
                     /locus_tag="JN078_004067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001315756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043061.1"
                     /translation="MAESFATGSDHQVVNELNGERLREPNEVFKRLGRAIRYNFQVDD
                     AKFRRDNVKEIISTLFANKVDVDHPENKYKDFKDLEDKVEKRLQNRQTEYQNEINQLS
                     APGVNFDDI"
BASE COUNT          765 a          707 c          712 g          881 t
ORIGIN      
        1 catcttttac ggggtgaagg tagatttcgt atgaagggta tctgttgtct cctgcaaagt
       61 cataagcgga tattttccta cggtcagtat ttttttctta ccgtcaatct tgtagcgaag
      121 ttgccatacc ttttcccgga tacaggaaca taaaggtaca ggccattacc atcgagaagg
      181 cggtatggtt tttctttcgg ctttgctgct tcaatctgct tcacggtgag catgggtaaa
      241 aatccggtgg gtaaaattat tttatccact ttttacccgt catggagtgc ggctgtcaac
      301 gatctgacgc gaaccatgac gaaccgtgaa tatacggaag gcttgatatt caggggattt
      361 tgcggactgg tacggatggg agcgaactga taaatggtgt cccctgcagg aatcgaacct
      421 gcaattagcc cttaggaggg gctcgttata tccatttaac taagaggaca atgcggcatg
      481 agtatacccg ctaatggact gcggagtaag tacactgccg ctcgattgct taaaccctcg
      541 ccatttatgc tgggttttta tcatttttct taatgttttc cgcacgttct gctttttggc
      601 gtgcttctgc tttgcgcttg ttgctcatgt cgttacggat ctgtgcatga ctcattaacg
      661 cgaagataaa ggtgccgccg cagatattcc ccgctaaagt aggtagtgcg aagggccaaa
      721 tgaaatcgct ccagtgcagc gtgccgttaa acaccagata gaggatttct acagaaccga
      781 caacgatgtg ggtggtgtca cccagtgcaa taagccaggt catcaatata atcaccacaa
      841 tctttgccgc acccgctgca ggaaacatcc aaaccatagt ggcgatcagc cagccggaaa
      901 tgatcgcgtt ggcaaacatc tcgctggggg tgttcttcat cacatccatg ccgattttga
      961 caaatgcatc gtgagtttct tcattgaaga taggcatata ttcaaatgcc catgcagcaa
     1021 tacctgtccc gagaatatta cccagcagca cgacgcccca taatcgcata agtaagccga
     1081 cgttgctcat tgtcggtttt tgcatgacgg gtagtaccgc agtcacggtg ttttcggtaa
     1141 ataattgctg gcgggccata atgacgataa taaaaccaaa ggtataaccg agattctcca
     1201 acaagaagct gcccggcacg ccttccagtt cgacatgaaa tatccctttt gccagtaacg
     1261 aagcgcccat cgacagaccc gccgcaatgg ctgaccacag tagtgccatt gcgtcgcgtt
     1321 ccagctcttt ttcaccatcc tggcggatat gttcatgaat tgccatcgcc cgggagggga
     1381 gtcgatcttc atctatttct atttttttgc cgcgctcttt ttcttcgctc tcaacttcaa
     1441 tttcgtcgct gtgttgatca attttgtcgt tgtccatggt ctcttctctt gaattagcac
     1501 gtatagctaa agcgtagcgg cttttttgct cgcaactggc gggagttact ctgaaaatgt
     1561 agaaaaggcc gcgtttgcct ttttctgttt ctatagaatc aagtagccta cagggcggcg
     1621 attaccaggc tatgatcaaa tcagcaaatc agggcgtctg gacatcagtt gacgtgctgt
     1681 tacaatcgcc cacacctaaa caggcggata cggtatcgtt ccgtcatgga tggcaaactg
     1741 cataagccat aaaaaaacag ggagacattt atgaagcttc gcctgtcggc gcttgctctg
     1801 ggaactacgc ttctggtggg gtgtgcgagt tccggtacag atcagcaagg gcgttctgac
     1861 ccgttagaag ggttcaaccg caccatgtac aacttcaact tcaatgtatt agacccgtat
     1921 attgttcgac cggtcgctgt cgcctggcgt gattatgttc cgcaaccggc gcgtaacggt
     1981 ttgagcaact ttaccggcaa ccttgaagaa cctgcggtga tggttaacta cttcttgcag
     2041 ggcgaccctt atcaggggat ggtccacttt acccgctttt tcctgaacac cattttgggg
     2101 atgggcggct ttattgatgt tgcagggatg gcgaacccga aactgcaacg gactgaacct
     2161 caccgcttcg gtagtacgct tggtcattat ggcgtgggtt atgggcctta cgttcagtta
     2221 ccgttctacg gtagcttcac gctgcgtgat gacggtggtg atatggcgga tggtctttac
     2281 ccggttcttt cctggctgac ctggccgatg tctgtgggta aatggacgct tgaagggatc
     2341 gaaacccgcg ctcagctgct ggattccgat ggtctgctgc gtcagtcgtc cgatccttat
     2401 attatggtgc gcgaagcgta cttccagcgt catgatttca tcgctaatgg cggcgaactc
     2461 aaaccgcagg aaaatccgaa cgcacaagcg attcaggatg atttaaaaga tattgattct
     2521 gaataagaaa caaataaaaa aggtgagtcg caaaactcac cttttttgtt gttatccctc
     2581 aattaccaca agtaaaagga gataaaccga caatgacccg gacgtaatga tgtaaaaata
     2641 ctgatgttcg tcactgacta tttccgatat tcaggcgttg aaaaatcaaa aaactggaaa
     2701 aataatttta aatatcatca aaattaacac ctggcgcaga tagttgatta atttcatttt
     2761 gatattccgt ctggcgattt tgaagccttt tttcaacttt atcttcgaga tccttaaagt
     2821 ctttgtattt attttcagga tggtcaacgt caactttgtt agcgaataaa gtagaaatta
     2881 tttcttttac attatcgcgt ctaaattttg catcgtccac ttgaaaatta tatcttattg
     2941 ctcgacctaa acgtttaaaa acttcgttag gttctctcag tctttccccg ttgagctcgt
     3001 ttacaacctg atgatcggaa cctgttgcaa atgattctgc catgatagct ttactgcttt
     3061 caaac
//
LOCUS       DADMJB010000264         3030 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.267, whole genome shotgun sequence.
ACCESSION   DADMJB010000264 DADMJB010000000
VERSION     DADMJB010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3030
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.267"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..465)
                     /gene="virK"
                     /locus_tag="JN078_004068"
     CDS             complement(<1..465)
                     /gene="virK"
                     /locus_tag="JN078_004068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor VirK"
                     /protein_id="HAY9043062.1"
                     /translation="MFSVSNLSFIGFLKRIVFSSDSLPGKWEHRKFRFMYILRCAINP
                     VASIRYYYELRSLPCIEDILAIHPTLPARIHRPYLHKGGRAWTRGQYILEHYRFVQNL
                     PEKYSKFLFPQKSVSLVQFIGKDGENFDIQCSSSGFDREGELMLSLFYNKTVI"
     gene            complement(470..1558)
                     /gene="capU"
                     /locus_tag="JN078_004069"
     CDS             complement(470..1558)
                     /gene="capU"
                     /locus_tag="JN078_004069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative hexosyltransferase CapU"
                     /protein_id="HAY9043063.1"
                     /translation="MNILFTESSPNIGGQELQAVAQMKALKKMGHSVLLVCRENSKIA
                     FEASKLGIDITFALFRNSLHIPTAWRLLGIVHGFQPNAIVCHSGHDSNIVGLVRLFTW
                     KHPFRIIRQKTYLTQKTKVFSINHFCDEVIVPGTSMKTHLEQEGCRTRVTVVPPGFDF
                     QKLYVDSRNSLPPNVLSWLASRRGCPVIAQVGMLRPEKGHEFMLNLLFHLKMNGRQFC
                     WLIVGSGSPELREHLQYQIDSMGMHDDVFIADNVFPAAPVYRVASLVVLPSENESFGM
                     VLAEASAFSVPVLASQIGGIPDVIQNNQTGTLLPAGNKHAWMCALNDFFNDPGRFYQM
                     ARQAKQDIEERFDINKTALKILTLAKHK"
     gene            complement(1561..2403)
                     /locus_tag="JN078_004070"
     CDS             complement(1561..2403)
                     /locus_tag="JN078_004070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HAY9043064.1"
                     /translation="MLNEGGILFKANHVPVLMYHHVSHCPGLVTLSPVTFRKQMKWLA
                     ENNWKTLSSDELEFFYRGGKLPRKSVMLTFDDGYLDNWFQVYPLLKEFNLKAHIFLIT
                     GFIGNGPVRHSPGKEYSHRDCEHQIATGNADNVMLRWSEVNEMLQSGLVEFHVHTHTH
                     TRWDKKFSSREEQCKHLRQDLLSGREYLKEMTGKCSKHLCWPEGYYNKDYIQVAEELG
                     FYYLYTTERRMNAPAKGTTRIGRISTKERESCAWLKRRLFYYTTPFFSSLLAFHKGPR
                     LPDD"
     gene            complement(2767..2883)
                     /locus_tag="JN078_004071"
     CDS             complement(2767..2883)
                     /locus_tag="JN078_004071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004996477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HAY9043065.1"
                     /translation="MPGIPPEIRWNNQKNALQLWNKEGGVVRREGDPLEMAQ"
BASE COUNT          912 a          695 c          557 g          866 t
ORIGIN      
        1 aataactgtt ttattgtaaa acaatgacaa catcaactct ccttcccggt caaaaccact
       61 ggaagaacac tggatatcaa aattctctcc atctttcccg atgaattgga ctaatgatac
      121 cgatttttgt ggaaacaaaa atttagaata tttttctggc aaattttgca caaagcgata
      181 atgctcaaga atatattgtc cacgggtcca ggcgcgcccc cctttatgca aataagggcg
      241 atgaattctt gctggcaacg tggggtgtat tgccagaata tcctcaatgc acggcaagga
      301 acgcagttcg taataatatc gaatactggc aaccggattt atagcacatc gcaaaatgta
      361 catgaaccgg aattttctgt gttcccactt ccccgggagt gaatctgagg aaaaaacaat
      421 ccttttaagg aaaccgataa atgataagtt acttacagaa aacatattgt tacttgtgct
      481 tcgctaatgt gagtattttt aacgcagttt tattaatatc aaaccgctct tctatatcct
      541 gttttgcctg gcgagccatc tgataaaaac gcccagggtc attaaaaaaa tcattcaggg
      601 cgcacatcca tgcgtgctta ttacctgctg gtaacaatgt cccggtctgg ttgttctgaa
      661 taacatcagg gattccacca atctgactgg ctagtacagg cacagaaaat gccgatgctt
      721 ctgccagtac cataccaaac gattcgtttt ctgaaggcag aaccaccaga ctggcaaccc
      781 gatatacggg ggcggcagga aaaacattgt cagcaataaa aacatcatca tgcatgccca
      841 tactgtcaat ctgatactgt aaatgctccc gcagttcagg cgaaccagac cccacaatca
      901 accaacagaa ctgtcgtcca ttcattttta aatggaacag taaattcaac ataaattcgt
      961 gccctttttc cgggcgcaac attcctacct gagcaataac ggggcatccc cttcgggacg
     1021 ccagccagga aagaacattt ggaggcaaac tgtttcggga atcaacgtat aatttctgga
     1081 aatcaaagcc tggaggcaca acagtaaccc gggttcgaca tccttcctgc tccagatgtg
     1141 tcttcatact tgttccggga acaatcacct catcgcaaaa atgatttatt gaaaaaactt
     1201 ttgttttttg tgtcaaatat gtcttttgcc tgataattct gaatggatgt ttccaagtga
     1261 ataaccgtac taaaccaaca atattgctat catgcccact gtgacaaacg attgcattgg
     1321 gctgaaaacc atgaactatt ccgagtaatc tccatgcagt agggatgtga agactgtttc
     1381 gaaataacgc gaatgtgata tcaattccca atttactggc ttcaaaagca attttgctgt
     1441 tttccctgca gacaagcaga actgaatgcc ccattttctt cagggccttc atttgagcaa
     1501 cagcctgtaa ttcctgacca cctatattcg gtgatgattc cgtaaatagt atattcatta
     1561 ttaatcatcc ggtaatcttg gccccttatg aaaggccagc aacgatgaaa aaaacggtgt
     1621 tgtataataa aaaagtcgtc ttttcagcca tgcgcaactt tcccgttctt tggtgcttat
     1681 tcttcctatc cgtgtagttc ctttagcagg agcattcatt cttctttctg ttgtatataa
     1741 ataatagaat ccaagttctt cagcgacctg aatataatcc ttattataat aaccttccgg
     1801 ccaacacaaa tgtttactgc attttcctgt catttctttc aaatattctc tcccactcaa
     1861 caagtcctgc cgaagatgtt tacactgttc ttctcgtgaa ctgaactttt tatcccagcg
     1921 tgtatgagta tgcgtatgaa catgaaattc gaccagacca gattgcaaca tttcgtttac
     1981 ttcagaccag cgaagcataa cattatcagc attccctgtc gctatttgat gttcgcaatc
     2041 gcgatgagaa tattcctttc caggagagtg acgaaccgga ccattcccaa taaaaccggt
     2101 aattaaaaaa atatgtgctt tgagattaaa ctcttttaat aaaggatata cctgaaacca
     2161 gttgtcaagg tatccatcat caaatgtcaa cataacgctt ttccggggga gttttccgcc
     2221 ccgataaaaa aactccagtt catctgatga cagtgttttc cagttatttt cagccaacca
     2281 tttcatttgc ttccggaatg tcacgggaga aagtgtaacc agtccggggc aatgactgac
     2341 atgatgatac attaataccg gaacatgatt ggctttgaac aaaatgcccc cttcgtttaa
     2401 catttaaagt ttctggcacc tagtaagcag agacaaaagg aaaacccaat aaagctggtg
     2461 cattttattt ccagatactg gatgaataac atagcaaacc catggcatac tcgatatatt
     2521 ttactaaatt aaacatcaac aattcataaa caatgatata ttatcatatc ttttaaaaac
     2581 gactcactaa gaaccttgag gtggcacact gaatttggct acctgaacag aggtgatatg
     2641 ttcacctcag aacaacacag gtgctccaat gaaaaaaagg aatttcagcg cagagtttat
     2701 ttacggggtg acgctttcat taacctgtac acgaacttct attccggcat catgacaggc
     2761 ctgcagctac tgcgccattt ccagcggatc gccctcccgg cgtaccaccc caccttcttt
     2821 attccataac tgcagagcat ttttctgatt gttccatctg atttcggggg gtattccggg
     2881 caaggttgtt cagtaaggca ttccttcgta aaatcagcat gttttttgca cgacggaaac
     2941 cggcagccat gaaaatctgt ctttatcata ctctgaatcc tgacacgatc ccgggttata
     3001 aaaaatttgc acaggctatt gccaccgata
//
LOCUS       DADMJB010000265         2942 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.268, whole genome shotgun sequence.
ACCESSION   DADMJB010000265 DADMJB010000000
VERSION     DADMJB010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2942)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2942)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2942
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.268"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            577..1293
                     /locus_tag="JN078_004072"
     CDS             577..1293
                     /locus_tag="JN078_004072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043066.1"
                     /translation="MNDNSLLRNSSLFIAYMGCVGWVSAYSYGWGTSFYYGFPWWVVG
                     AGLDDVARSLLYAIIVMGILFTGWGIGILFFLLIKKRSKIQDLSFFRLFFAITLLFFP
                     VIFELLILKQYFILPLSLSCIISSLVISIIIRIYGRIFSVSCFSDIPFVREHRIKLIM
                     AGFLVYFWLFSFLVGWYKPQLKKEYQMLCYNNSWYYVLARYDSRLVLSSSFKDDSNRF
                     LIFNTEQSGFYEINDVYVRK"
     gene            1845..2249
                     /locus_tag="JN078_004073"
     CDS             1845..2249
                     /locus_tag="JN078_004073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858300.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043067.1"
                     /translation="MNTALIVALMCMWYAVPAAAKETLLAMPRNSTEHCYAEINVHGP
                     YGVYFRVVPHPPGGKSWVECNSDYYYSDKPPGVQILGTRAGCRVYGICGTTSTLHVAG
                     RGVVCIKNICSPRGMIIHRIRKRPVVAVSDEM"
     gene            2312..2611
                     /locus_tag="JN078_004074"
     CDS             2312..2611
                     /locus_tag="JN078_004074"
                     /inference="COORDINATES: protein motif:HMM:NF013677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY9043068.1"
                     /translation="MTKTVSTSKKTRKQHSPEFCSEALKLAERIGVAAAARELSLYES
                     QLYAWRSKLQQQMTSSERESELAAENARLKRQLAVQAEELAILQKAATYFAKRLK"
     gene            2608..>2942
                     /locus_tag="JN078_004075"
     CDS             2608..>2942
                     /locus_tag="JN078_004075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY9043069.1"
                     /translation="MKYVFIEKHQAEFSIKAMCRALRVARSGWYTWCQRRTGISPRQQ
                     FRQHCDSVVLAAAFTRSKQRYGAPRLTDELRAQGYHFNVKTVAASLRRQGLRAKASRK
                     FSPVSYRAHG"
BASE COUNT          824 a          605 c          667 g          846 t
ORIGIN      
        1 ttgtgggcca taaatattcc aaaaaaatag cccgctccgt ttattaccgg aacgggcgag
       61 agcatgacat tgtctgtaat tataatgaga ctgctgattc tacttatttt taatttcaag
      121 aaaagcgttt tctacaaaga attatgagat ttaatgtttt gtttagacaa tattgtcatt
      181 ctgttcaata atgaaagtct tcatcaacaa caagtaaaaa caacgtccct ctcatcgaac
      241 cggacttgca gatttcccgc atccggctct cttgcaacac atcagacctt cacgttcggg
      301 cggttatggg gaaggtccag caagctgtat gagccctaac tgtttgaata ccagtagatt
      361 accagaaact tctatcgatt gaagacatta ccaactagcg ttactaaatg ttgaccaagt
      421 tttgttcact tgtctggttt tgatagtagc attctgcaga gtattttgat atgataaata
      481 tgcattaaca atgatattat tgttaatttc ctagcatgaa aattaaaaga tcaacttttt
      541 atctcgaata ttttttacat tatcagttgg tttcttatga atgacaattc attgcttaga
      601 aattcttcat tattcatcgc ctatatggga tgtgtagggt gggtcagtgc ttattcttat
      661 ggctggggaa cctcttttta ctatggattt ccatggtggg ttgttggtgc aggtttggat
      721 gatgttgcca gaagtttact ctatgctatc atagtaatgg gtatactttt taccggttgg
      781 gggattggta ttttattttt tcttcttata aagaaaagaa gtaaaataca agacttgagt
      841 ttttttagac tattttttgc tattacccta ctgtttttcc ctgtaatatt cgaactttta
      901 attctcaaac aatatttcat acttccatta tcactttcat gcattattag ttcattggtt
      961 atttcaataa taattcgcat atatggacgg atcttttctg tatcatgttt ttcagatatc
     1021 ccttttgtta gagaacaccg cattaagtta attatggctg gttttttggt ttatttttgg
     1081 cttttttcct ttcttgttgg ctggtataaa cctcaattaa aaaaagaata tcagatgctt
     1141 tgttataata atagttggta ttatgttctt gctcgttatg attcacggct cgttttgtct
     1201 agttcattta aagatgacag taacagattc ttaatattta atacagaaca gtcgggattt
     1261 tatgaaatca atgatgttta tgtcagaaag taataatcct ctcccacaaa gtgaattaaa
     1321 cgaatatata atgcgttcga agtatatgta ttgagctgtc atactgagaa acaaacctta
     1381 gggcagcaca attaaagcca gaaacaacta tgcaagaaag ttactaaata agtgctcgga
     1441 acagtaaaac actcaggggg gactcagtcc agattatgta atcagataaa ttgccaaaca
     1501 tcacaaatca ccagcaggac tgagtgatgc cgagcattgc accaataccc cgtgatgaac
     1561 gatgcctgat gcagaaagct ccctataaaa caaagaacaa aaactacgac cggcgattca
     1621 ccgtcatact gatgctgcat cgtggtgaca ctgtctgtca ctttcatgtt gactgaacaa
     1681 ctctgctgcg aagaaggtgt accgccggcg ggatttgatt gtccggcgtc tagcttccac
     1741 ttccctgatg gaactgaaag ttgttatggc cggtcagctt gccctgtccg caggacatga
     1801 ggtgctgtga cggacagcac cagtaacgga aagtgacaat aaaaatgaat actgcgctga
     1861 tagttgcact aatgtgtatg tggtatgcgg tacccgctgc tgcaaaagag actttactgg
     1921 ctatgccacg taattcaaca gaacattgct atgcggagat taatgtgcac ggaccatatg
     1981 gggtgtattt ccgagtggtc ccgcatcccc ccgggggaaa gagctgggtc gaatgtaaca
     2041 gtgactacta ttactctgat aaaccaccgg gagtacagat actcggaacc cgtgcagggt
     2101 gtcgggtata cggaatctgc gggaccacct cgacactgca tgtggctgga agaggggttg
     2161 tgtgtattaa aaatatatgc agtccacgtg ggatgataat tcacaggata cggaaacgtc
     2221 ctgtagtggc tgtaagcgat gagatgtgat cttatccagc aatagtggac acgcggctaa
     2281 gtgagtaaac tctcagtcag aggtgactca catgacaaaa acagtatcaa ccagcaaaaa
     2341 aacacgtaaa cagcattcgc ctgaattttg cagtgaagcc ctgaagcttg ctgaacgcat
     2401 cggtgttgct gccgcagccc gtgaactcag cctgtatgaa tctcagctct atgcgtggcg
     2461 cagcaaactg cagcaacaga tgacctcgtc tgagcgtgaa agtgaactgg ccgctgaaaa
     2521 tgcccgcctg aagcggcaac tggcggtgca ggcagaggaa ctggctatcc tccaaaaggc
     2581 cgcgacatac tttgcgaagc gcctgaaatg aagtatgtct ttattgaaaa acatcaggct
     2641 gagttcagca tcaaggcaat gtgccgcgcg ctccgggtgg cccgcagcgg ctggtatacg
     2701 tggtgtcagc ggcggacagg gataagccct cgtcagcagt tccgtcagca ctgcgacagc
     2761 gttgtcctcg cggcggcctt tacccggtca aaacagcgtt acggtgcacc acgcctgacg
     2821 gatgaactgc gtgctcaggg ttaccacttt aacgtaaaaa ccgtggcggc aagcctgcgc
     2881 cgtcaggggc tgagggcaaa ggcctcccgg aagttcagcc cggtcagtta ccgcgcacat
     2941 gg
//
LOCUS       DADMJB010000266         2918 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.269, whole genome shotgun sequence.
ACCESSION   DADMJB010000266 DADMJB010000000
VERSION     DADMJB010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2918)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2918)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2918
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.269"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..1322
                     /locus_tag="JN078_004076"
     CDS             <1..1322
                     /locus_tag="JN078_004076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415419.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAY9043070.1"
                     /translation="LVVVFSWVFIFALYFTPYALIVGQLGSTFKDGKGGVSTWIKHTM
                     GPGLAYLAAWTYWVVHIPYLAQKPQAILIALGWAMKGDGSLIKEYSVVALQGLTLVLF
                     IFFMWVASRGMKSLKIVGSVAGIAMFVMSLLYVAMAVTAPAITEVHIATTNITWETFI
                     PHIDFTYITTISMLVFAVGGAEKISPYVNQTRNPGKEFPKGMLCLAVMVAVCAILGSL
                     AMGMMFDSRNIPDDLMTNGQYYAFQKLGEYYNMGNTLMVIYAIANTLGQVAALVFSID
                     APLKVLLGDADSKYIPASLCRTNASGTPVNGYFLTLVQVAILIMLPTLGIGDMNNLYK
                     WLLNLNSVVMPLRYLWVFVAFIAVVRLAQKYKPEYVFIRNKPLAMTVGIWCFAFTAFA
                     CLTGIFPKMEAFTAEWTFQLALNVATPFVLVGLGLIFPLLARKANSK"
     gene            complement(1323..2231)
                     /locus_tag="JN078_004077"
     CDS             complement(1323..2231)
                     /locus_tag="JN078_004077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY9043071.1"
                     /translation="MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQR
                     LKIRLFNRTTRSVSLTEAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINDARV
                     AARIFLMPLLVGFTREYPDIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIG
                     PPVKLCVAATPEYFARYGKPRHPHDLLNHQCVVFRYPSGKPFHWQFAKELEIAVAGNI
                     ILDDVDAELEAVLMGAGIGYLLYEQIKEYLDTGRLECVLGDWSTERPGFQIYYPNRQY
                     MSCGLRAFLDYVKTGQISQSQRHRPQ"
     gene            2331..>2918
                     /locus_tag="JN078_004078"
     CDS             2331..>2918
                     /locus_tag="JN078_004078"
                     /EC_number="1.6.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H oxidoreductase"
                     /protein_id="HAY9043072.1"
                     /translation="MQSERIYLVWAHPRHDSLTAHIADAIHQRAMERKIQVTELDLYR
                     RNFNPVMTPEDEPDWKNMDKRYSPEVHQLYSELLEHDTLVVVFPLWWYSFPAMLKGYI
                     DRVWNNGLAYGDGHKLPFNKVRWVALVGGDKESFVQMGWEKNISDYLKNMCSYLGIED
                     ADVTFLCNTVVFDGEELHASYYQSLLSQVRDMVDAL"
BASE COUNT          738 a          621 c          728 g          831 t
ORIGIN      
        1 ggctggtggt tgttttttca tgggtgttta tctttgcgct ctatttcaca ccttatgcgc
       61 taattgttgg tcagttaggc tcgaccttca aagatgggaa gggcggggtc agtacctgga
      121 ttaaacacac gatgggaccc ggactggctt atctcgccgc gtggacctac tgggtggtgc
      181 atattcccta tctggcacaa aaaccccagg caattctgat tgcgctcggt tgggcgatga
      241 aaggcgacgg ttcgctaatc aaagaatatt cagtcgtagc gttacagggg ttaacgctgg
      301 tgctgtttat cttctttatg tgggttgctt cacgcggtat gaaatcgctg aaaatcgtcg
      361 gttctgtggc agggattgcg atgtttgtta tgtcgctcct gtatgtggcg atggcggtaa
      421 ccgcgcctgc gattactgaa gtgcatattg cgaccacaaa cattacctgg gaaacgttca
      481 ttcctcatat cgactttacc tacattacca ctatttcaat gctggttttc gcggttggcg
      541 gagcagagaa gatttctcct tacgttaatc aaacgcgcaa cccaggaaaa gaatttccaa
      601 aagggatgtt atgcctggcg gtgatggttg cggtttgtgc cattctgggc tcactggcga
      661 tggggatgat gtttgactcg cgtaatatcc cggatgactt aatgactaac ggtcaatatt
      721 acgcctttca gaagctgggc gagtattaca acatgggtaa tactttaatg gtgatttacg
      781 ccattgcgaa taccctggga caagtagctg cgctggtatt ctcgattgat gccccgctta
      841 aagtgctatt aggtgatgct gacagcaaat atattccagc cagtttatgt cgtaccaacg
      901 cttctggtac gcccgttaat ggctattttc tgaccctggt gcaggtggca attctgatta
      961 tgctgccgac tctcggcatc ggtgatatga acaatctcta taaatggctg ttgaatctta
     1021 actcggtagt gatgccgctg cgttatttat gggtatttgt tgcatttatt gcagtcgttc
     1081 gcctggcgca gaaatataaa ccagaatatg tctttattcg taataagcct ctggcaatga
     1141 ccgtcgggat ttggtgtttt gcctttaccg cctttgcctg tttgacgggg atcttcccga
     1201 aaatggaagc cttcactgca gagtggacct tccagttggc gctgaatgtt gcaacgccgt
     1261 ttgtgctggt aggattagga ctgattttcc cgctgctggc gcgtaaagcg aatagtaaat
     1321 aattattgtg gtcggtgacg ctgactctgg ctgatctgac ccgtttttac ataatcgaga
     1381 aatgcgcgca agccgcagga catatactgg cggtttggat aatagatctg gaagcctgga
     1441 cgctctgtgc tccagtctcc cagtacacat tctaaacgac cagtatcaag gtactccttg
     1501 atctgttcat agagcagata cccgatacca gcacccatca aaacggcctc cagttcagca
     1561 tcaacatcat ccagaatgat atttcctgcg acagcaattt ccagctcctt tgcaaattgc
     1621 cagtggaaag gtttgccgct gggataacga aaaacaacac attgatgatt aagcagatca
     1681 tgaggatggc ggggtttgcc atatcttgca aagtactctg gcgttgctgc tacacataat
     1741 ttcactggcg ggccgatcgc cacgctgatc atatcttttt cgacgatgcc actaagtcga
     1801 acgccagcgt caaagccctg ttggacgata tcgacaagag agtcgtcagt tgtgagctcg
     1861 actttaatat caggatattc acgtgtgaaa ccaaccagta aaggcattaa aaatatacgt
     1921 gcagctaccc gggcgtcatt gattttgagc gttcctgtcg gtgtcagacg aaaatcattc
     1981 atctcatcta acatgatctg aatttcgtcg aaagctgggc gcaatcgttc atagagatta
     2041 gaacctgctt ccgttaacga tacgcttcgg gttgtccgat tgaataagcg aattttaaga
     2101 cgttgttcca gtgttttaat actatggcta atggcggacg aggataagcc taactcatcg
     2161 cccgctgcac gaaagctttg attacgggcc acggcaaaga aagtggcaaa gtcagacata
     2221 ttcatccgca ttagtgaaaa tccttcatta actcatcctg aatcatcacg tttacaggat
     2281 tatgccgcct gcgtaaagtg cgctccagaa cttaacgtgg aggtaaaatt atgcagtctg
     2341 aacgtattta tttggtatgg gcccatcctc gtcatgattc attgaccgca catattgctg
     2401 atgcgatcca tcagcgggca atggagcgga aaatacaggt gacggaactc gatttatatc
     2461 ggcgtaattt caacccagtg atgacgccgg aagatgaacc agactggaag aatatggata
     2521 aacgttattc tccagaggtt catcagcttt attcagagct gcttgaacat gacacgttag
     2581 tggtggtttt tcctctctgg tggtacagct tcccggcaat gctaaaagga tatattgaca
     2641 gagtatggaa taatgggctg gcttatggag atgggcacaa attaccattc aataaagttc
     2701 gttgggtggc gctggttgga ggagacaaag aatcatttgt ccagatgggc tgggaaaaaa
     2761 atataagcga ttatttgaaa aatatgtgca gttatcttgg tattgaagat gccgatgtca
     2821 ctttcttgtg taatacagtg gtattcgatg gggaagaact tcatgcgagc tattatcagt
     2881 cgttattatc tcaggtacgg gatatggtag atgcacta
//
LOCUS       DADMJB010000267         2868 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.270, whole genome shotgun sequence.
ACCESSION   DADMJB010000267 DADMJB010000000
VERSION     DADMJB010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2868)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2868)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2868
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.270"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..1075)
                     /locus_tag="JN078_004079"
     CDS             complement(<1..1075)
                     /locus_tag="JN078_004079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000142995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1737 domain-containing protein"
                     /protein_id="HAY9043073.1"
                     /translation="MAFKHYDVVRAASPSDLAEKLTHKLKEGWQPFGSPVAITPYTLM
                     QAIAAEGAVISATSDPEYYFVVVLAGQSNGMSYGEGLPLPGTYDRPDPRIKQLARRST
                     VTPGGAACKYNDIIPADHCLHDVQDMSRLNHPKADLSKGQYGTVGQGLHIAKKLLPFI
                     PANAGILLVPCCRGGSAFTTGADGTYSDASGASENSTRWGVDKPLYKDLIGRTKAALE
                     KNPKNVLFAVVWMQGEFDFGGTPANHAAQFGALVDKFRADLADMAGQCVGGSAGGVPW
                     ICGDTTYFWKQKNESTYQTVYGSYKNKTEKNIHFVPFMTDENGVNVPTNKPEEDPDIR
                     GIGYYGSKWRDSSATWTSQDRASH"
     gene            complement(1565..1641)
                     /locus_tag="JN078_004080"
     tRNA            complement(1565..1641)
                     /locus_tag="JN078_004080"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1605..1607),aa:Arg,seq:tct)
     gene            complement(1655..1731)
                     /locus_tag="JN078_004081"
     tRNA            complement(1655..1731)
                     /locus_tag="JN078_004081"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1695..1697),aa:Arg,seq:tcg)
     gene            complement(1739..1814)
                     /locus_tag="JN078_004082"
     tRNA            complement(1739..1814)
                     /locus_tag="JN078_004082"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1779..1781),aa:Ile,seq:cat)
     gene            complement(1855..2820)
                     /locus_tag="JN078_004083"
                     /pseudo
     CDS             complement(1855..2820)
                     /locus_tag="JN078_004083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001403604.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
BASE COUNT          647 a          851 c          692 g          678 t
ORIGIN      
        1 aatggctcgc cctgtcctgt gacgtccagg tggctgagct gtcacgccat ttcgaaccgt
       61 aataaccgat accccgaatg tccgggtctt cttccggttt gttcgtcggc acattcaccc
      121 cgttctcatc ggtcatgaac ggtacgaaat ggatattctt ttccgtttta tttttatagc
      181 tgccgtacac cgtctggtac gtggattcgt tcttctgctt ccagaaatac gtcgtgtccc
      241 cgcatatcca gggaacaccg ccagcagagc caccgacgca ctggcctgcc atatccgcca
      301 ggtctgcacg gaatttatca accagcgcac caaactgtgc ggcatgattt gccggcgtac
      361 cgccaaaatc aaattccccc tgcatccaca ccacggcaaa cagcacattt ttcgggttct
      421 tctccagtgc cgcttttgtt cgaccgataa ggtccttata cagcggcttg tccacacccc
      481 agcgggttga attctccgag gcaccactcg cgtcactgta tgtgccatca gctccggtgg
      541 tgaacgctga accaccacga cagcacggaa ccagcagaat gcccgcattc gccggtataa
      601 acggcagcag ttttttggcg atatgcagcc cctgccccac ggttccgtac tgcccctttg
      661 acaggtccgc tttcggatgg ttaagacggc tcatgtcctg cacatcatgc agacaatggt
      721 ccgccggaat gatgtcgtta tatttgcatg ctgcaccgcc cggtgtcacc gtactgcgac
      781 gcgccagttg cttaatacgc gggtccggac ggtcatatgt ccccggcagc ggaaggcctt
      841 caccatacga catgccgttt gactgccctg ccagaaccac aacaaagtaa tactccgggt
      901 cgctggtggc gctgattact gcaccttctg ctgcaatcgc ctgcatcaga gtataagggg
      961 ttatggccac cggactacca aacggctgcc agccctcttt cagtttatgt gtcagctttt
     1021 ccgcaagatc tgacggcgac gccgccctga caacatcata gtgtttaaaa gccatgaatc
     1081 ctcccggccg ggataatatt gtgagtaaaa tgaggagcgg gctgaagtcc ggaagttaca
     1141 ggacaatggc agaagagaga cgacagcccg caattcgaaa aagaccgcgc agttgcgcag
     1201 agtgactact atggggtatt attcgccagc tgaaatatta cttcacgttt tattgtttat
     1261 tccttgccgc ccgcgtctcc cagcgcgggc tttttttgcc cacaagaaag cccctccaga
     1321 gaggggctgg agagtggcgc tatgtgccat tgcatggtgc cgggtgcctc ccggtgaatt
     1381 cagtaccagc acctgaatcc gcgattatcc catataccta ctcgctgatt gcccctccgc
     1441 acagggggat tcaccatgcc agtttctttt aacaaactcc ccgcaaacca gacaacagtc
     1501 aaccgtctga attgtgagac atttaaaaaa aaagcccgca aaagcgagcc agggaaaata
     1561 agtgtggcgc gttgtactgg attcgaacca gtgaccgatt gcttagaagg caattgctct
     1621 gtccggctga gctaacaacg catgatgcag ataatggacc gccatcgggg acttgaaccc
     1681 cgcgcagcca gcttcgaagg ctggcgctct ttcctgatga gctaatggcg gtatgtgatg
     1741 gtggcccttg ctggatttga accagcgacc tggcgattat gagtcgctcg ctctcaccac
     1801 tgagctaaag ggccgggagc cgcataataa cgacgcgtaa ttaattcttc aatatcatcc
     1861 gttctggctg actaaatcct gtacttcccg aaccgtctgc tcaaaacgtt cagtctccag
     1921 ctcaacgcca attgcacgac gcccgagcgc cagtgccgct ttcactgtcg aacccgaccc
     1981 catgaaaaaa tctgcaatca ggtcacccgg acgactgcta gcgctgatta tctgctgcag
     2041 catttctgcc ggtttttcgc acggatgttt cccgggatag aactgcaccg gtttatgcgt
     2101 ccacacatcg gtatacggca cctgcaccgt cacgccaaaa taccgccgca gatgtttata
     2161 ttcactcagc agctccgcat actgccggtt cagtgaggta tacgtatcca ccagctggtg
     2221 gtggagcttt tccagttcac cacgccgatg cttctcttct gccacccggg caaacagcgc
     2281 ctgtaatttc agataatcgc tttcattcgg caactgccac tgactggcac tgaaccagtg
     2341 cgacaccatg tttttctttc ctgtggcatc tgcaatctgt tttgccgtta tccccagggc
     2401 agctcgcgca tcacgaaagt aagaaatcag cggggccatc acatgctgtt tcagtgcact
     2461 gcccttcgcc tcatagccat catctttcgg gcggtacggc ccctgataat gttccgcgaa
     2521 cagaatgcgc tctgtggcgg ggaaatacgc ccgcaggctt tccttgttgc atccgttcca
     2581 gcgtccggac ggcttcgctc agataatatg gttcagcaca ctgaagcgtt cacgcatcat
     2641 gatttcgata tcagatgcca ggcgatgacc acagaacagg taaagacttc cggcaggttt
     2701 cagcacccgc cagaactgcg ccagacactg ctccagccac ttcaggtaat catcgtcgcc
     2761 cttccactgg ttatcccagc cctcaggctt cactttaaag tacggcgggt ccgtgactat
     2821 caggtcaaca gaattttcgg gtaacgacca gataaattcc aggcagtc
//
LOCUS       DADMJB010000268         2861 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.271, whole genome shotgun sequence.
ACCESSION   DADMJB010000268 DADMJB010000000
VERSION     DADMJB010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2861)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2861)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2861
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.271"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            13..171
                     /locus_tag="JN078_004084"
     CDS             13..171
                     /locus_tag="JN078_004084"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043074.1"
                     /translation="MYLSRISEAISLSAGEVAHRLIVPSSDIDLGETELPVLGEITWQ
                     AYDPARSK"
     gene            171..761
                     /locus_tag="JN078_004085"
     CDS             171..761
                     /locus_tag="JN078_004085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000380343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2313 domain-containing protein"
                     /protein_id="HAY9043075.1"
                     /translation="MDSLQDDYTKLLYGLMQPGPAWSDTDGVLDGLAPSLVRVHQRAD
                     ELVIEIDPGQSTELIERYEELYGLPDSCSPVGTQTLRQRQQRLEAKANVAGGINEQFF
                     LDQLEALGYTGVTIEQFQHLDASPDPEWGDRWRYFWRVTLPVDAGAQWQTCTDACNTP
                     IRTWGDTVAECVINKLCPSHTVVLFSYPDEDEDAQD"
     gene            748..1481
                     /locus_tag="JN078_004086"
                     /pseudo
     CDS             748..1481
                     /locus_tag="JN078_004086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000554725.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
     gene            1482..1955
                     /locus_tag="JN078_004087"
     CDS             1482..1955
                     /locus_tag="JN078_004087"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9043076.1"
                     /translation="MAIALKNIQAGNAKKFTLSSANNSTKNAAFYLWGNPSRPVVAEL
                     GDDSGWHFYSQRNTDGSITFAVNGQVIPLNYGNFDARYKHRTEGVQDVRYGYEMYYNP
                     GSNTVSWTFRSPSGHGLSGISISDTGRNSADNVNGVYYRPLQKLINGIWYNVASI"
     gene            2015..2503
                     /locus_tag="JN078_004088"
     CDS             2015..2503
                     /locus_tag="JN078_004088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HAY9043077.1"
                     /translation="MTKQYDVTWLFSEDGKNWYEEQKNFASDTIKMVYTGDGRVVWVG
                     KDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVS
                     ARTGEWEEDLLLGLISDEDREKLKAYRIYAKSLQAMDFSAITDKSSYNAIEWPVSPEG
                     SS"
     gene            2527..>2861
                     /locus_tag="JN078_004089"
     CDS             2527..>2861
                     /locus_tag="JN078_004089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707257.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9043078.1"
                     /translation="MSVVISGALTDGAGIPMSGCQIILKSRVNTSEVVMRTRADVVTG
                     NNGEYSFEAQVGKYCVYLKRDWRDEYCVGDIAVYDDSKPGTLNDFLTAPDEGDLKPDV
                     VKRFEEMVA"
BASE COUNT          750 a          624 c          802 g          685 t
ORIGIN      
        1 ccagaggggc gtatgtatct gtccagaatc agtgaggcca tcagtttgtc tgctggtgaa
       61 gtggcccacc ggttaatcgt cccttcatcg gatattgacc tgggggagac cgagcttccg
      121 gtgctcggcg agatcacctg gcaggcttat gacccggcaa ggagtaaata atggattcgt
      181 tacaggatga ttatacaaag ctgctgtacg gactgatgca gccggggcct gcatggtcag
      241 ataccgacgg tgtacttgac ggtctggcac catcgcttgt gcgtgttcac cagcgggctg
      301 atgaactggt gattgaaatc gatcccggtc agtccacaga gctgattgaa cgttatgaag
      361 aattgtatgg tttacctgat tcctgttccc ctgtcggaac ccagacatta cgccagcgtc
      421 agcaacgtct tgaagcaaaa gccaatgtgg ctggtggcat aaatgagcag ttcttcctgg
      481 atcagcttga ggcgctggga tataccggcg taacgatcga acagttccag cacctggatg
      541 caagccccga tccggaatgg ggagatcgct ggcgttattt ctggcgtgtg acgttgccgg
      601 tggatgccgg tgctcagtgg cagacatgca cggacgcctg caacacaccg atccggacgt
      661 ggggggatac ggttgcggag tgcgtgatta ataaattatg tccgtcacac accgtcgttt
      721 tattttccta tccagatgag gatgaagatg cacaggattg atacgctgac tgcggtaaaa
      781 gataagtttg gtccgggtaa gaacggattt actgacggaa atcttcgcac aggacgtctt
      841 gctacctggc tgaacagtgc catgtggaat gccattcagg aggaaatctg tggtgtcatt
      901 gagaaggccg ggatagaact gaataaagaa gaacacgacc agctatataa ggctatatta
      961 ttgctggtgg gcggtgcaat taacgaagag gcattgctga taaaaaataa cctttcggat
     1021 gtggaagaca gggatgaggc tgttgaaaac ctcggattaa aacccacggt ggataaggca
     1081 aaaaatgccg ttcagcgtga tggcgacacc atgaccggag agctgaaaat ccgtggtgtt
     1141 aatgcgctga ggattttcaa cgaagctttt ggcctgattt ttcgtcgttc ggaagagtgc
     1201 ctgcacctta ttcccaccag tgaaggtcag ggggaaaatg gcgatattgg tcccctgcgc
     1261 ccgttcacca ttaatctgcg gacgggtgaa atatccatgt cgcataaagt gtctgttggc
     1321 ggtggttcgc aggtcaatgg tgcgctgggt atcggcgttc agaacgccct ggggggaatt
     1381 caattgcttt cggggataac gatacaggta taaaacaaaa cggcgacggc attctggatg
     1441 tttatgcgaa tggacagcat gtatttcgtt tccagaatgg tgtggcgata gcgttaaaaa
     1501 atattcaggc cggaaatgct aaaaaattca cgttatccag cgccaacaac tccacgaaaa
     1561 atgcagcgtt ttatttgtgg ggtaatccat ccaggcctgt tgttgcagag cttggtgatg
     1621 attccggctg gcatttctac agccagagaa ataccgatgg tagtatcaca ttcgctgtaa
     1681 acggacaggt aattccgtta aattacggaa acttcgatgc ccgctataaa catcgaactg
     1741 agggggtaca ggatgtgcgg tatggttatg aaatgtatta caaccctggc agcaacaccg
     1801 tttcatggac gtttcgctca ccttcgggac acgggttgtc agggatatcg atatcggata
     1861 ccggccgtaa ctcagcggat aacgtcaacg gtgtgtatta ccgaccgctg caaaaactga
     1921 ttaatggcat ctggtataac gtagcgagta tttaacaatg ttgcatttaa aaaatattac
     1981 ggcaggtaat ccgaaaaccg cggaacaata tcagctgaca aaacagtatg atgtcacctg
     2041 gcttttttcg gaagacggca aaaactggta tgaagaacag aagaactttg ccagtgacac
     2101 cataaaaatg gtttacaccg gagacgggcg cgtggtgtgg gtcggtaagg atgtgacagg
     2161 cattgaaccc cgtaacgcca gtgttattga agttcctgat attaccgcca accgccgcat
     2221 taccgcgccg ggttactggt tttaccgcaa tgatgaattt gtctttgact acagactcaa
     2281 agcggaagat gagcgtgatg cccttctggc tcaggtcagt gcccggacag gggaatggga
     2341 agaagacctg ctgctggggc taatcagcga cgaagaccgg gaaaaactga aagcgtaccg
     2401 tatttacgcg aaatcgctgc aggcgatgga tttcagcgcc atcactgata aatcctcata
     2461 caacgccatt gaatggcccg tctctccgga aggttcttcc tgatttaatt tatcgcgaga
     2521 aaaactatgt ctgtagtgat atcaggtgcg ctgactgatg gcgcaggcat ccccatgtcc
     2581 ggatgccaga ttattctgaa atcccgtgta aacacctcag aagtggtgat gcgtaccagg
     2641 gctgatgtag tgaccggaaa taacggtgaa tattcgtttg aggcacaggt cggaaaatat
     2701 tgcgtgtatc tgaaacggga ctggcgcgac gagtactgtg ttggcgacat tgctgtatac
     2761 gacgactcaa agcccggcac gctgaatgac tttctgactg cccccgatga aggcgacctg
     2821 aagccggatg tcgtcaaacg ctttgaggaa atggtggcgc a
//
LOCUS       DADMJB010000269         2841 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.272, whole genome shotgun sequence.
ACCESSION   DADMJB010000269 DADMJB010000000
VERSION     DADMJB010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2841)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2841)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2841
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.272"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            15..161
                     /locus_tag="JN078_004090"
     CDS             15..161
                     /locus_tag="JN078_004090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005008483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector OspC family protein"
                     /protein_id="HAY9043079.1"
                     /translation="MNNGLVDVNKKFQKANSGDTMLDNAMKSKDSKMIEFFIKKWSGI
                     RQTI"
     gene            complement(521..1261)
                     /locus_tag="JN078_004091"
     CDS             complement(521..1261)
                     /locus_tag="JN078_004091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HAY9043080.1"
                     /translation="MKTKNFLLFCIATNMIFIPSANALKAEGFLTQQTSPDSLSILPP
                     PPAEDSVVFQADKAHYEFGRSLRDANRVRLASEDAYYENFGLAFSDAYGMDISRENTP
                     ILYQLLTQVLQDSHDYAVRNAKEYYKRVRPFVIYKDATCTPDKDENMAITGSYPSGHA
                     SFGWAVALILAEINPQRKAEILRRGYEFGESRVICGAHWQSDVEAGRLMGASVVAVLH
                     NTPEFTKSLSEAKKEFEELNTPTNELTP"
     gene            complement(1592..2458)
                     /gene="ospB"
                     /locus_tag="JN078_004092"
     CDS             complement(1592..2458)
                     /gene="ospB"
                     /locus_tag="JN078_004092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspB"
                     /protein_id="HAY9043081.1"
                     /translation="MNLDGVRPYCRTVNKKNESISDIAFAHIIKRVKNSSCTHPKAAL
                     VFLGEKGFCDSNDVLSIMGQQIPRVFKNKMLYDYVFKNEKSKNDFLKMAESWLPQSEP
                     IVINNDDDALNAAAYFSVKKAKIKTVNDTDFKEYNKVYILGHGSPGSHQLGLGSELID
                     VQTIISRMKDCGILNVKDIRFTSCGSADKVAPKNFNNAPAESLSCILNSLPFFKEKES
                     LLEQIKKHLENDESLSDGLKISGYHGYGVHYGQELFPYSHYRSTSIPADPEHTVKRSS
                     QKKTFIINKELD"
     gene            complement(2708..2841)
                     /locus_tag="JN078_004093"
                     /pseudo
     CDS             complement(2708..2841)
                     /locus_tag="JN078_004093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309413.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3440 domain-containing protein"
BASE COUNT          869 a          526 c          517 g          929 t
ORIGIN      
        1 tgctagaata ttttatcaat aatggattgg ttgatgtaaa caaaaaattt caaaaagcaa
       61 atagtgggga cactatgctt gacaatgcaa tgaaaagcaa agattcaaaa atgattgaat
      121 tttttattaa aaaatggagc ggtatcaggc aaacgatttg agaggtgacc taaaatatat
      181 ttaggttgtg ccctgaatct gaagttgtca tttctgttat attgatcgac ataggggatg
      241 gtgcagaccg ttcccctgca acaccacatt gcatgtggtg aacggaaccg ccccgagttt
      301 cctagagaat gttttatctg tgaactcagg ttgccagatc atcgtttccg atggcagcat
      361 aataagcttt ttctgcttct gccggaggga tatgtcccag cctttccagt aatcccttaa
      421 attcaggggt aaaacgtggt gtgcccatag actcctccta tgctcatata gggtagattt
      481 gtctatgggc cctccatagc ctgatacagg ctgtccagct ttatggggtc agttcattgg
      541 taggagtatt taattcttca aactcttttt tggcttcgct aaggcttttg gtaaattcag
      601 gtgtattatg aagtactgca acaaccgatg ctcccattaa acgcccagcc tctacatcgc
      661 tttgccaatg cgcaccgcag atgacccgac tttctccaaa ctcatatcca cgtcgaagta
      721 tttccgcttt acgttgagga ttaatctccg caagtatcag tgctactgcc caaccaaagg
      781 atgcatgacc agagggataa gagccagtga tagccatgtt ctcatcttta tcaggtgtac
      841 aggttgcgtc tttataaata acgaatggac gaactctttt ataatattct ttggcgttac
      901 gcacggcgta atcatggcta tcctgtagta cttgtgttaa caactgatat aagattgggg
      961 tattttccct tgaaatatcc atgccataag catctgaaaa tgcaagacca aaattctcgt
     1021 agtatgcatc ttcgctagcg agacgtacac gattagcatc ccggagcgag cggccgaatt
     1081 cataatgagc tttgtcagcc tgaaatacta ctgaatcctc tgccggaggc ggcggaagta
     1141 ttgacaaact gtctggtgaa gtttgttgag tgagaaaacc ttctgccttc agagcatttg
     1201 ctgaggggat aaaaatcata tttgtagcaa tacaaaaaag aagaaagttt ttggttttca
     1261 taatttattt ccttagcata attaattgat gattttggtc agctgtaaaa aacgagctgt
     1321 gttacaaaaa acacaagtca tgcggaaaaa tttgaacaga gtgatggaaa aacaaaaaat
     1381 agtcttatat taaagtaata acattatttt tcatattcac gaaaaataat gtagtaaaag
     1441 aatgatgttt tttatctatt tgttcgtatc gttttgtctc tgtattatga tgatttgtga
     1501 ttttccctca tagggaagca cttttctact aaagaaaaaa aataacttca tcttaaatgc
     1561 aaacaattaa ctataggtta aaaattttat actaatccag ttctttatta ataataaaag
     1621 tctttttctg agagcttctt tttactgtat gctccggatc agcaggaatt gaagttgaac
     1681 gataatgtga gtagggaaaa agctcttgac catagtgaac tccatatcca tgatagccgg
     1741 atatttttag accatcactc aatgactcat cgttttcaag gtgttttttt atctgctcta
     1801 gcaaagattc tttttcctta aaaaaaggca gagagttaag gatacaagaa agactttcag
     1861 caggggcatt gttaaaattt ttaggagcca ctttatcagc ggagccgcat gaagtaaaac
     1921 ggatatcttt cacatttaga ataccacagt ctttcattct tgaaatgatt gtttgtacat
     1981 caataagttc cgaaccaagg cctaattgat gagaaccagg actaccgtgc ccaagaatat
     2041 aaaccttatt atactcttta aaatcagtat cgtttactgt ttttattttc gcttttttta
     2101 cagaaaaata agcagcagca ttcaatgcgt catcatcatt atttattact attggttcac
     2161 tctgtggtag ccatgattca gccattttta gaaaatcatt tttacttttt tcatttttaa
     2221 aaacataatc atataacatc ttgttcttaa atactcttgg tatttgttgt cccataatag
     2281 atagaacatc attgctatca caaaaacctt tctctcctaa aaaaaccaat gctgcttttg
     2341 ggtgagtaca tgatgaattt tttacccttt ttattatatg tgcaaatgca atatctgata
     2401 tgctttcatt ctttttattg actgttctac agtatggtct aacaccatct aaattcatac
     2461 ctacatgact ccatatattg ttttataaac atcatagtaa agggtgttat attttcatat
     2521 agtatgcaag cttctttgta tactatgatt taaaaaaacg gaacaaaaat gcaattatat
     2581 tctggcattg tttaatgcgg tttgtctttt ttattcatta tttcaatgaa agaatttcaa
     2641 ctacaaagtt aattgatcct acctacataa tatagacaca gtacctaaag taccgtggag
     2701 atcatccggg gaagccccgg gtctgatacc agtgcaggta gaccgctatc ttgttccggt
     2761 aatgttctgc cgttctttac ggcatcacct ctagcagaaa catcgcgtaa ctgcgccaag
     2821 tatgatgaac ttctcttacc g
//
LOCUS       DADMJB010000270         2793 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.273, whole genome shotgun sequence.
ACCESSION   DADMJB010000270 DADMJB010000000
VERSION     DADMJB010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2793
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.273"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(7..843)
                     /locus_tag="JN078_004094"
     CDS             complement(7..843)
                     /locus_tag="JN078_004094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000480972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(6)-Id"
                     /protein_id="HAY9043082.1"
                     /translation="MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLK
                     PIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATE
                     IAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMM
                     SNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDP
                     RRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQT
                     SY"
     gene            complement(843..1646)
                     /locus_tag="JN078_004095"
                     /note="aph(3'')-Ib"
     CDS             complement(843..1646)
                     /locus_tag="JN078_004095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010890156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(3'')-Ib"
                     /protein_id="HAY9043083.1"
                     /translation="MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASR
                     RGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAW
                     PSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLL
                     ARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLA
                     LMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG"
     gene            complement(1707..2522)
                     /gene="sul2"
                     /locus_tag="JN078_004096"
     CDS             complement(1707..2522)
                     /gene="sul2"
                     /locus_tag="JN078_004096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001043260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfonamide-resistant dihydropteroate synthase
                     Sul2"
                     /protein_id="HAY9043084.1"
                     /translation="MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADV
                     IDLGPASSNPDAAPVSSDTEIERIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAY
                     LNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAA
                     LTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRA
                     LTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR"
     gene            2546..2623
                     /locus_tag="JN078_004097"
                     /pseudo
     CDS             2546..2623
                     /locus_tag="JN078_004097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013221335.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
BASE COUNT          670 a          792 c          769 g          562 t
ORIGIN      
        1 tgatatctag tatgacgtct gtcgcacctg cttgatcgcg gccgcgatag ctagatcgcg
       61 ttgctcctct tctccatccg cgttccaagc tgcggaaagg cacccataag cgtacgcctg
      121 gtcgagcagg cgacgcggat cgacgtccag cgcacgagag aatgcgtccg ccatctgtgc
      181 aatgcgtcta ggatcgagac aaaggtcgtc tctgtcagcc ggatcgtaga acatattggc
      241 ggcgccaaag cccacttcac cgaccagacc gacgggatct atcaccagcc agccgcgact
      301 ggagaacatg atgttttcat gatgcagatc gccatgtagc ccacgcagtt ccgaggcatt
      361 gctcatcatt tgatcggcta taatcgccgc gtggacgtag tcagtttgac aacctgcgtt
      421 ttgatcatcg cgcgcccgct gaaacaaagc tgcaaagcga tcccggatcg ggagaagggc
      481 agaaggcagg ggttcctcag atgcggcata cagcttcgcc attagttccg ctgcaatttc
      541 ggtcgcctgg tagtcgccgt gctcggcaac gatgtgagag agcattcgct ccccggcata
      601 ttcgagcaac atcagattgt tctcacgacc gagcaaccgg actgctcccc tcccattgcg
      661 ccataccaga tagtcggccc cgcgcagttc atcagcaatg tcttctatag gtttcaatcc
      721 cttgacgatt gcaggagtcc cgtctggcaa tgaaactttc caaacgaggc tggaaaaggt
      781 gtccgcaatg agaacaggtt gcgaaacgtg ccaatgagca ggaaaaacag gcggcatgaa
      841 catcaacccc aagtcagagg gtccaatcgc agatagaagg caaggcgttc gcggtcgggg
      901 gcttcgatcc ccaatacatt gaataggaca gcgaaggcgc gctctgcttc atctggcgct
      961 gcccagttct cttcggcgtt agcaatcatg agtgccaaat cggcatagcg atctgctgtt
     1021 ccgagccgcc caaggtcgat cagacccgtg cattgaagag ttttagggtc caccatgaag
     1081 ttcggcatgc agggatcacc atggcaaaca accatatcgg tgcgctcttg gtcgagccgc
     1141 accggtagct ctcgttcgac acgagccaaa agatcgagct gcggcgtact cttgtcctcg
     1201 tccggtaaga agtcgggatt gacggcattg cgggacacca catcaacggc gcgtccgaac
     1261 attcgcgaca gcctgcgctc aaacggacat tgatcaaccg ataggctgtg aacagcgcca
     1321 agttgctgcc ccattgacgg ccacgctttg agcaaatccg ctccagacag atcagccgcc
     1381 ggtactcccg gaattgccgt tatcaccaag catgcaccct cctgttcctc ctgccagttg
     1441 atgacctcgg ggcaagccac acctcgacct ttgagccaaa tgaggcggtc acgctctcca
     1501 gcgagctcac cgcggcggga agcaggtgcg attttcgcga aggcatgccc gtcaccacgt
     1561 cgaaaaacaa aatcaccaga ttctccgcct ctgacaggca accagtcaga atgcgattca
     1621 ccaaaaaaaa tattagttcg attcaatgga ggttccttca gttttctgat gaagcgcgaa
     1681 tatagagaaa tatcccgaat gtgcagttaa cgaattcttg cggtttcttt tagcgccgcc
     1741 aataccgcca gcccgtcgcg caaggggcgc ggctcgtgtg tgcggatgaa gtcagctcca
     1801 cctgcggcgg cggcaagctc tgcagcgagt gtcgcggccc cgacatcccc cggaccacgg
     1861 cctgtgagcg cgcgcagaaa ggatttgcgc gaaacagaca gaagcaccgg caaatcgaag
     1921 cgcagccgca attcatcgaa ccgcgccagc accgagagcg aggtttcggg agcagccccc
     1981 agaaaaaacc ccatgccggg atcaaggaca aggcggttgc gtttgatacc ggcacccgtc
     2041 agcgccgcga tgcgcgcgtc aaagaacgcc gcaatgtgat ccatgatgtc gccagcgggt
     2101 gcctcgcgcc gatctgcctg cccgtcttgc accgaatgca taacgacgag tttggcagat
     2161 gatttcgcca attgcggata gaacgcagcg tctggaaaac cgcgaatatc attgagatag
     2221 gccacaccac gcgacaaggc ataggcttgc gtcgcgggtt gataactgtc gagcgagacg
     2281 ggaatgccat ctgccttgag cgcgtccagc accggcgcga tacgctcgat ttctgtgtcg
     2341 gacgaaacag gcgcggcgtc ggggttgctg gatgccggac cgaggtcgat cacatctgcc
     2401 ccctcggcca tcagcttacg cgcctgcgca atggctgcgt ctggcgccag ataccggcct
     2461 ccatcggaga aactgtccga ggttatgttg acgatgccga aaatgatgag cgatttattc
     2521 atgggggctt ctataataat aataatcgag catgagtctc atacggatgc tcgggtcgaa
     2581 agggaatccc caggcgagta acctgtttgc ggtgatccat tagctgcagg agcagaatag
     2641 catacatctg gaagcaaagc caggaaagcg gcctatggag ctgtgcggca gcgctcagta
     2701 ggcaattttt caaaatattg ttaagccttt tctgagcatg gtatttttca tggtattacc
     2761 aattagcagg aaaataagcc attgaatata aaa
//
LOCUS       DADMJB010000271         2787 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.274, whole genome shotgun sequence.
ACCESSION   DADMJB010000271 DADMJB010000000
VERSION     DADMJB010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2787)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2787)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2787
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.274"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(924..1595)
                     /gene="queE"
                     /locus_tag="JN078_004098"
     CDS             complement(924..1595)
                     /gene="queE"
                     /locus_tag="JN078_004098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HAY9043085.1"
                     /translation="MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTW
                     EKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLL
                     PLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKH
                     PVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHK
                     YLNIA"
     gene            1734..1874
                     /locus_tag="JN078_004099"
     CDS             1734..1874
                     /locus_tag="JN078_004099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043086.1"
                     /translation="MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFI
                     QI"
     gene            1888..2760
                     /locus_tag="JN078_004100"
                     /pseudo
     CDS             1888..2760
                     /locus_tag="JN078_004100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417258.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YgcG family protein"
BASE COUNT          857 a          573 c          517 g          840 t
ORIGIN      
        1 tttaactagt tcggtttatc cctgttttta caaggaatat taactacact cgatgtcttt
       61 agaataaaag acaatacgaa tcgcacttta tcaattttca cttaaagtat gaactggata
      121 tctttattca taagaactat tcatcaacag cgtatagagg cggttatgta aaaccactca
      181 ttagcctcaa aacaaagaca aacttccaga tttattactt aaccaatgaa taacaagctt
      241 aaaaaatata ctgttattct aaagaaaaaa ttaacaggca ttaattcaat attaaaaaaa
      301 taatagatta aaatttctta acgatttaag aatcatacaa ataacacttt gattaaattt
      361 aattttttgt atcgataatt gtgaacctct ctggcatgga gaactatttt gaacatgagg
      421 tgttacgtgg atatgttgct tattacaagt actgctaata taaaaacttg agaaagagat
      481 aacgggttat atggtggttt atccccgctg gcgcgggaaa ctcccagctc ttgcccgcct
      541 caaagtgttg taactcggtt tatccccgct ggcgcgggga actctgtaaa cataacctat
      601 tattaattaa tgatttttta agccagtaac aatctaccaa ctttacagta tcacacaaac
      661 aacacatcca ttatgttaaa gagtacttaa ttcattgatt aaaaaggtaa atatttaaaa
      721 taactctata caaattaaaa tctaccaaac tttaccgcaa taattttcac tccagcgaaa
      781 aattaatgcc acagaatttg tagataatgc taatgattag ccctggatgg gtaaaatgga
      841 ggagttttca gaggcgacaa acaatataaa tgagtagaag tctttacagg ttccacccat
      901 ttataacgct tataaatgtt taatcaggca atatttagat atttatgtgt ttgcatcgac
      961 aaacgccaat tacgcgcaat gcaggtttca atgcacaaac gtgtggcatc atccttttgg
     1021 ctaatcggct gcagtgcaat gactcgcggt ttatcatcgg tcagcgttgc caatagttca
     1081 tcgagtgctt caatatcgcg tacgcgcccc actggatgct tgatttcgtt ggctcgctcc
     1141 agtgcctgtg acaacacgtc atagccgccg cgcatgttca gctttggcga tacggtaacc
     1201 caggtattcg gtgtgcagcg tacttcatga gttccactgg tttcgatctg gcagctaaaa
     1261 ccgttctttt cgagcaggtc agtcagtggc agcaaatcat gaatgcaagg ctcaccaccc
     1321 gtaatcacca catgccgcgc ggtatatccc tgccgaccaa tgacagccag caaatcttca
     1381 ctgctcgccg ccccccactt atcactctct ttggtcttcg ccagaatgct gaaaagggag
     1441 acttcccgat cctcaagctt ttcccaggtg tgtttggtgt cgcaccaggc acagccaacc
     1501 gggcatccct gtaaacgaat aaaaatggcg gggacgccgg taaagtaacc ctcaccttgc
     1561 agggtctgga acatctcgtt aatcgggtac tgcatagcat tctctgtgaa gtggataatt
     1621 gttaattatt gcagatcctg ccgcaacaat catgccttat taacattctg ttacatgcag
     1681 atttaaagaa aaatgcgaaa catatcgtta ataattaaag ggagtaacgt attatgtcag
     1741 aagaaaataa agaaaatgga tttaatcatg tcaaaacatt caccaaaatt atatttattt
     1801 tttctgtatt agtttttaat gataacgagt ctaaaattac cgatgccgcc gtcaatttat
     1861 ttatccagat ttaatgagaa atttataatg cgctatttca tactaatgtt cactttcgta
     1921 tgttcctttg ttgcagccca accaactatt gtcccacaat tacagtaaca agttacggat
     1981 cttacgagta gcttaaactc acaagaaaag aaagaactga cgcacaagtt agaatctatt
     2041 ttcaataata cccaagtgca aattgctgta ttaattgttc ccacaaccaa agacgagaca
     2101 attgaacaat atgctacaag agtttttgac aattggcgtt taggagatgc caaacgtaat
     2161 gatgggatac tgatcattgt tgcctggtca gatcgtactg tccgcatcca ggtaggttat
     2221 gggctggaag aaaaggtaac cgatgctctg gctggagata tcatccgtag caacatgata
     2281 cccgcattta aacaacaaaa atttgctcag ggattagagc tagctataaa cgctttgaat
     2341 aaccaactca cttcacaaca ccaatatccg actaatcctt cagaaagtga atcagcgtct
     2401 tccagtgatc attattactt tgctattttt tgggtatttg cagtgatgtt cttccctttc
     2461 tggttttttc atcaaggcag taatttttgt cgcgcatgta aaagtggagt ctgtatttca
     2521 gcaatctatc ttttagattt attcctgttc tccgataaaa ttttttccat tgctgtattt
     2581 tccttctttt ttactttcac catatttatg gtctttacct gtttatgtgt acttcagaaa
     2641 agagcatcag gtaaaagtta tcattcagac aacagcggtt ccggtggagg ctcaagtggc
     2701 ggcggattta gcggcggtgg cggttcttct ggaggtggcg gcgcatccgg ccgctggtaa
     2761 ctcaaccata aaaaatgcca tcccgga
//
LOCUS       DADMJB010000272         2751 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.275, whole genome shotgun sequence.
ACCESSION   DADMJB010000272 DADMJB010000000
VERSION     DADMJB010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2751
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.275"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..2192
                     /locus_tag="JN078_004101"
     CDS             <1..2192
                     /locus_tag="JN078_004101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="exonuclease"
                     /protein_id="HAY9043087.1"
                     /translation="RYEKGGKDGITMTFIGPSPSVQDKSASTDNTNINGEDMTEIEES
                     MLLPVSGQELPIRWLAQHGSEKPVTHVSRDELQALHIARAEELPAVTALAISHKTSLL
                     DSLEIRDLHKLVRDTDKVFPNPGNSDLGLITAFFEAYLDADYTVRGLLTKEWMKGNRV
                     SRITRTASGANAGGGNKTDRNPNLVHTLDTLDVEIAAATLPMDFNIYEIPGSVYRRAK
                     EVVLKKESPFKEWSAALRAPPGILDYSRAAIFALIRSAHPEFYHYPGRLQGYINAYLT
                     ETDHENPSKETLTATRHTPEKDILEEINREVVTERETEEEKPQPSDAMAGEQATTETM
                     EPDTTEHCQNAQSLDAQSQVSSANQVKVTADEVNKIMQAANISQPDADKLLAVSRGEF
                     VEGISDPNDPKWVKGIQTRDSVNQNQHESERNDQKAEQNSPNALQNEPETKQSEPVAQ
                     QEPEKVCTACGQSGGGNYPDCGAVMDDATYQKTFDEENQVEVQENDPEEMEGAEHPHK
                     ENAGSAQDHASDSKTGETADPLITVNGHHEITSTSRTCDHLMIDLETMGKNPDAPIIS
                     IGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIKWWLKQSREAQSAIMTDEIPLDD
                     ALLQLREFIDENSGEFFVQVWGNGANFDNTILRRSYERQGIPCPWRYYNDRDVRTIVE
                     LGKAIDFDARTAIPFEGERHNALDDARYQAKYVSAIWQKLIPSQADF"
     gene            2251..2454
                     /locus_tag="JN078_004102"
     CDS             2251..2454
                     /locus_tag="JN078_004102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4224 domain-containing protein"
                     /protein_id="HAY9043088.1"
                     /translation="MSSLFLTEDELLILTGCKYASHQRKWLMENELPFYTNRSGKPIV
                     SRDLFTCNKTLPPREVEPNFGAI"
BASE COUNT          842 a          665 c          652 g          592 t
ORIGIN      
        1 accgctatga aaaaggcggg aaagatggca tcacaatgac atttatcggc ccttccccct
       61 ctgttcagga caaatcagcc agcactgata ataccaacat caacggcgaa gacatgactg
      121 agattgagga gagcatgctt ctacctgtct ccggtcagga actgcccatt cgttggcttg
      181 ctcaacacgg cagcgaaaaa ccagtaacgc acgtttcacg cgacgaactc caggcattac
      241 acattgcacg ggctgaagaa ctaccggctg ttactgccct ggctatttcg cataaaacca
      301 gtctgctcga ctcgctggag attcgcgacc tccacaaact ggttcgtgac actgacaaag
      361 ttttccctaa tcctggtaat tcagacctgg gactaataac tgcttttttc gaagcatact
      421 tggacgctga ctacactgtt cggggcctgc tgacaaaaga gtggatgaaa ggaaatcgtg
      481 tttcacgcat cacccgcacg gcttccggtg ctaatgctgg tggtgggaac aaaaccgatc
      541 gcaatccgaa tttagtacac accctcgaca cactggatgt ggagattgca gcagccacac
      601 ttccgatgga ttttaatatt tatgaaattc cgggcagcgt ttatcgtcgc gcaaaagaag
      661 tagtcctgaa aaaagaaagt ccgttcaaag aatggtccgc agcacttcgt gcacccccgg
      721 gtattctgga ctattcccgc gccgctattt ttgcacttat ccgaagcgca caccctgaat
      781 tttatcacta cccgggacgc cttcaggggt atatcaacgc ctatttgacg gaaactgatc
      841 acgagaaccc cagcaaggaa actctcacag ctacccggca tacgccggaa aaagatatcc
      901 tggaagaaat taaccgcgag gtggttactg agcgtgaaac agaagaagaa aaaccacaac
      961 catctgacgc aatggcaggt gaacaggcaa caactgaaac aatggaaccg gatacaactg
     1021 aacattgcca gaacgcgcag tcgctggatg ctcagtcgca ggtgagttcc gctaaccaag
     1081 taaaagtcac cgctgacgaa gtaaacaaaa ttatgcaggc agccaatatc agccagcctg
     1141 acgccgataa gttacttgct gtatcgcgtg gtgaatttgt tgaggggatt agcgacccta
     1201 atgatccgaa atgggtcaag gggatccaga ctcgcgattc tgtgaaccag aaccagcatg
     1261 aatcggaacg gaacgaccaa aaagcggaac aaaacagccc aaatgcgtta caaaacgagc
     1321 cagaaacgaa acaatccgaa ccagtagcgc aacaggaacc ggaaaaagtc tgcaccgcct
     1381 gcggtcagag cggtggcggc aactaccctg attgtggcgc ggtgatggac gacgcaacat
     1441 accagaaaac attcgatgaa gagaatcagg ttgaagttca ggaaaatgat ccggaggaaa
     1501 tggaaggcgc tgaacatcca cacaaggaga atgctggcag cgctcaggac cacgccagcg
     1561 atagtaaaac tggcgagacg gcagatccct taattacggt gaatggtcat cacgaaatca
     1621 catccaccag caggacgtgt gaccatctaa tgatcgacct tgaaaccatg ggaaaaaatc
     1681 ctgatgcccc gatcatctca ataggtgcaa tatttttcga tccgcaaacc ggagatatgg
     1741 gacccgaatt tagtaagact atcgatctgg aaactgctgg cggagtcatt gatcgggaca
     1801 ccattaaatg gtggcttaag caatcacgcg aagcgcaatc tgccattatg accgatgaaa
     1861 tcccgttaga tgatgcactg ttacaattgc gggaatttat cgacgaaaac tccggtgaat
     1921 tttttgttca ggtctgggga aatggagcca acttcgacaa cacgattttg cgccgttcat
     1981 acgaacggca ggggatcccc tgcccgtggc gttactacaa cgatcgcgat gtacgcacaa
     2041 tcgttgagct ggggaaagcc atagacttcg atgccagaac ggctattcca ttcgaaggtg
     2101 agcgccataa tgcacttgat gacgctcgtt accaggcaaa atacgtttca gctatctggc
     2161 aaaaactgat cccgagtcag gctgattttt aatgttcaac cctaattgcc gctaaccgta
     2221 tatagttagc ggcggttatg agatatagct atgagcagct tatttttaac cgaagatgaa
     2281 ttgctaatat taacgggctg caaatatgca agccaccagc gaaaatggtt aatggaaaac
     2341 gagcttccgt tctataccaa tcgtagtggc aaaccgattg tcagccggga tctatttacc
     2401 tgcaataaaa ctttaccacc acgcgaggta gagccgaatt ttggtgcgat ctgatgggaa
     2461 gacgaaggaa aaatcctgag cacgaaaaat tacctccaaa tgtataccca aataaatata
     2521 gttatgtatg gaaaccaaca tccagcgaat ctgtaacact aaccgccatc aaggatggtt
     2581 tagctgcttt atggaaaaag tatgaggaaa ctgtaaataa tcgcgatcgt gcaatgacat
     2641 tcggtcgctt gtgggaaaaa ttcctcgcca gcgcctatta cagtgacctc agtccaagaa
     2701 cacaaaaaga ttatctgcaa catcaaaaaa gttgcttgcc gtattcggta a
//
LOCUS       DADMJB010000273         2741 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.276, whole genome shotgun sequence.
ACCESSION   DADMJB010000273 DADMJB010000000
VERSION     DADMJB010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2741)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2741)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2741
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.276"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(230..2608)
                     /gene="ppsA"
                     /locus_tag="JN078_004103"
     CDS             complement(230..2608)
                     /gene="ppsA"
                     /locus_tag="JN078_004103"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000069371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HAY9043089.1"
                     /translation="MSNNGSSPLVLWYNQLGMNDVDRVGGKNASLGEMITNLSGMGVS
                     VPNGFATTADAFNQFLDQSGVNQRIYELLDKTDIDDVTQLAKAGAQIRQWIIDTPFQP
                     ELENAIREAYAQLSADDENASFAVRSSATAEDMPDASFAGQQETFLNVQGFDAVLVAV
                     KHVFASLFNGRAISYRVHQGYDHRGVALSAGVQRMVRSDLASSGVMFSIDTESGFDQV
                     VFITSAWGLGEMVVQGAVNPDEFYVHKPTLAANRPAIVRRTMGSKKIRMVYAPTQEHG
                     KQVKIEDVPQEQRDIFSLTNEEVQELAKQAVQIEKHYGRPMDIEWAKDGHTGKLFIVQ
                     ARPETVRSRGQVMERYTLHSQGKIIAEGRAIGHRIGAGPVKVIHDISEMNRIEPGDVL
                     VTDMTDPDWEPIMKKASAIVTNRGGRTCHAAIIARELGIPAVVGCGDATERMKDGENV
                     TVSCAEGDTGYVYAELLEFSVKSSSVETMPDLPLKVMMNVGNPDRAFDFACLPNEGVG
                     LARLEFIINRMIGVHPRALLEFDDQEPQLQNEIREMMKGFDSPREFYVGRLTEGIATL
                     GAAFYPKRVIVRLSDFKSNEYANLVGGERYEPDEENPMLGFRGAGRYVSDSFRDCFAL
                     ECEAVKRVRNDMGLTNVEIMIPFVRTVDQAKAVVEELARQGLKRGENGLKIIMMCEIP
                     SNALLAEQFLEYFDGFSIGSNDMTQLALGLDRDSGVVSELFDERNDAVKALLSMAIRA
                     AKKQGKYVGICGQGPSDHEDFAAWLMEEGIDSLSLNPDTVVQTWLSLAELKK"
BASE COUNT          654 a          761 c          683 g          643 t
ORIGIN      
        1 aagaggtggt ggcttttttt agccgtaaac gggtcgcaaa atataaatat cctgaacata
       61 tcgtggtaat cgaaaaacta ccgcgcactg cctcaggtaa aatacaaaag tttttgttaa
      121 gaaaagatat tatgcggcga ttaacgcagg atgtctgtga agagattgaa taagtttcat
      181 cttcggggat cacataaacc cggcgacaaa acgccgccgg gtatttattt tatttcttca
      241 gttcagccag gcttaaccag gtttgcacca cggtgtccgg attcagagac aggctatcga
      301 tcccctcttc catcaaccat gcggcaaaat cttcgtggtc ggacggaccc tgaccgcaaa
      361 tcccgacata tttgccctgt ttcttcgcgg cacggatagc catcgacagc aatgctttca
      421 ccgcatcgtt gcgctcatcg aacagttcag acaccacgcc ggagtcacga tccagaccga
      481 gcgccaactg cgtcatgtcg tttgagccaa ttgagaagcc gtcgaaatat tcgaggaact
      541 gctcggccag caaggcgttg gacgggattt cacacatcat gatgattttc agcccgttct
      601 caccacgctt cagcccctga cgcgccagtt cttcaaccac cgctttcgcc tggtctacgg
      661 tacgcacgaa cgggatcatg atctcaacgt tggtcagccc catgtcgttg cgcacacgtt
      721 tcactgcttc acactccagc gcgaagcagt cgcggaagct gtcggaaaca tagcggcccg
      781 cgccacggaa gccgagcatc gggttctctt catctggctc gtaacgctca ccaccgacca
      841 ggttggcata ttcgttcgat ttaaaatcag agagacggac aatgacgcgc ttcggataaa
      901 acgcggcacc cagcgtcgcg atcccttcag tcagacgacc aacgtaaaat tcacgcggag
      961 aatcaaaacc tttcatcatc tcgcggattt cgttttgcaa ctgcggttcc tgatcgtcaa
     1021 actcaagcag tgcgcgtggg tggacgccaa tcatacggtt gatgataaat tccagacgcg
     1081 caagtcccac gccttcgttc ggcagacagg cgaagtcgaa agctcgatcc gggttaccga
     1141 cgttcatcat cactttcaac ggcagatccg gcatggtttc tacgctggag cttttcacgc
     1201 taaattccag caactccgca tagacgtaac cggtatcacc ttcggcacaa gaaacagtga
     1261 cgttctcacc gtctttcatc cgttctgttg catcaccaca gcccacgacc gccggaatac
     1321 ccagttcacg agcgatgatc gccgcgtgac aggtacgacc gccacggttg gtgactatgg
     1381 cagatgcttt cttcatgatc ggttcccagt ccgggtcggt catgtcagtg accagcacgt
     1441 caccaggttc gatgcggttc atttcgctga tgtcatggat gactttcacc ggacccgcac
     1501 cgatgcgatg accgatagca cggccttcgg cgataatctt accctgtgaa tgcagcgtat
     1561 aacgctccat gacctgaccg cgtgagcgca cggtttccgg acgcgcctgc acaatgaaca
     1621 gtttgccggt gtggccatct ttcgcccact caatatccat cgggcgaccg tagtgtttct
     1681 caatttgtac ggcctgtttt gccagttcct gcacttcttc gttggtcagc gagaagatgt
     1741 cacgctgttc ctgcggtacg tcttcgattt taacctgctt gccgtgctcc tgggtcggcg
     1801 cgtaaaccat gcggattttt ttcgacccca tggtgcggcg cacgatagcc gggcgattcg
     1861 ccgccagtgt cggtttatgc acgtaaaact catccgggtt aaccgccccc tgcacgacca
     1921 tctcaccaag gccccatgcg gaagtgataa acaccacctg gtcaaagccg gattcggtat
     1981 caatggagaa catcacgcca gaagatgcga ggtcggagcg caccatccgc tgaacaccgg
     2041 cggagagcgc cacgccacgg tgatcgtaac cctggtgcac acgataagag atggcgcgac
     2101 cgttaaacag agaagcaaat acatgtttca ctgccacgag aacggcgtca aacccctgaa
     2161 cgttgaggaa ggtttcctgc tgaccggcaa aggaagcgtc cggcatatct tctgcggtgg
     2221 cggaggagcg caccgcaaaa gaggcgtttt cgtcatcggc ggaaagctga gcataggctt
     2281 cgcggatggc gttttccagc tcaggctgga agggagtgtc gataatccac tggcggattt
     2341 gcgcgcccgc tttcgcaagc tgagtaacat cgtcaatatc cgttttatcc agcagttcat
     2401 aaatgcgctg gtttacgccg ctttggtcca gaaactggtt aaacgcgtcg gcggttgtgg
     2461 cgaaaccatt cggaacggaa acgcccattc cggaaaggtt agtaatcatt tcacccaggg
     2521 aggcattttt gcccccaacc ctgtctacat cattcatgcc gagttggttg taccaaagca
     2581 ccagcggtga cgagccattg ttggacatcg aacaatcctt ttgtgataaa tgaacggttt
     2641 gagaaacaca tttctgcgca tttatctttg catatttaac cggatgaaaa aaacggtgaa
     2701 tcgttcaagc aaatatattt ttttactttt taagactgat c
//
LOCUS       DADMJB010000274         2682 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.277, whole genome shotgun sequence.
ACCESSION   DADMJB010000274 DADMJB010000000
VERSION     DADMJB010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2682)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2682)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2682
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.277"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            281..1123
                     /locus_tag="JN078_004104"
     CDS             281..1123
                     /locus_tag="JN078_004104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HAY9043090.1"
                     /translation="MLNGGGILFKANHVPVLMYHHVSHCPGLVTLSPETFRKQMKWLA
                     ENNWKTLSSDELEFFYRGGKLPRKSVMLTFDDGYLDNWFQVYPLLNEFNLKAHIFLIT
                     SFIGNGPVRHSPGKEYSHRDCEHQIATGNADNVMLRWSEVNEMLQSGLVEFHVHTHTH
                     TRWDKKLTSREEQCKHLRQDLLSGREYLKKMTGKCSKHLCWPEGYYNKDYIQIAEELG
                     FHYLYTTERRMNAPAKGTTRIGRISTKERENCVWLKRRLFYYTTPFFSSLLALHKGPR
                     LPDD"
     gene            1126..2214
                     /gene="capU"
                     /locus_tag="JN078_004105"
     CDS             1126..2214
                     /gene="capU"
                     /locus_tag="JN078_004105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative hexosyltransferase CapU"
                     /protein_id="HAY9043091.1"
                     /translation="MNILFTESSPNIGGQELQAVAQMKALKKMGHSVLLVCRENSKIA
                     FEASKFGIDITFALFRNSLHIPTVWRLLGIVHSFQPDAIVCHSGHDSNIVGLVRFFTW
                     KHPFRIIRQKTYLTRKTKFFSINHFCDEVIVPGTNMKTHLEQEGCRTRVTVVPPGFDF
                     QELYVDSRNSLPPSVLSWLASRRGCPVIAQVGMLRPEKGHEFMLNLLFHLKMNGRQFC
                     WLIVGSGSPELREHLQYQIDSMGMHDDVFIADNVFPAAPVYRVASLVVLPSENESFGM
                     VLAEASAFSVPVVATQIGGIPEVIQNNQTGTLLPAGNKHAWMCALNNFFNDPGRFYQM
                     ARLAKQDIEERFDINKTALKILTLAKQK"
     gene            2219..2682
                     /gene="virK"
                     /locus_tag="JN078_004106"
                     /pseudo
     CDS             2219..2682
                     /gene="virK"
                     /locus_tag="JN078_004106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858370.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor VirK"
BASE COUNT          771 a          483 c          589 g          839 t
ORIGIN      
        1 ttctggtcaa caaccagttg agcggattcg cgtttaaact ctgcgctgaa atttcttttt
       61 tcattatggc acctgtgttg ttctgaggtg agcatatcac ctctgttcag gtagctaaat
      121 ttagtgtgcc acctcaaggt tcttagtgag ccgtttttaa aagatatgat aatatattat
      181 tgtttataaa ttgttgatgt ttgatttagt agtatataaa gttcaccaac tttattaggc
      241 tttcctttta tctctactta ctgggtgcca gaaactttaa attttaaacg gagggggcat
      301 tttgtttaaa gcaaatcatg ttccggtatt aatgtatcat catgtcagcc attgcccagg
      361 actggttaca ctttctcccg agacattccg gaaacaaatg aaatggttgg ctgaaaacaa
      421 ctggaaaaca ctgtcatcag atgaactgga gtttttttat cggggcggaa aacttccccg
      481 taaaagcgtt atgttgacat ttgatgatgg ataccttgac aactggtttc aggtatatcc
      541 tttattaaac gagtttaatc tcaaggcaca tattttttta attaccagtt ttattggaaa
      601 tggtccggtt cgtcactctc ctggaaagga atattctcat cgcgattgcg aacatcaaat
      661 agcaaccggg aatgctgata atgttatgct tcgctggtct gaagtgaacg aaatgttgca
      721 atctggtctg gtcgaatttc atgttcatac acatactcat acacgttggg ataaaaagct
      781 cacttcacga gaagaacagt gtaaacatct tcggcaggac ttattgagcg ggagagaata
      841 tttaaaaaaa atgacaggaa aatgcagtaa acatttgtgt tggccggaag gttattataa
      901 caaggattat attcagatcg ctgaagaact tggattccat tatttatata caacagaaag
      961 aagaatgaat gctcctgcta aaggaactac acggatagga agaataagca ccaaggaacg
     1021 ggaaaattgc gtatggctga aaagacgact tttttattat acaacaccgt ttttttcatc
     1081 gttgctggcc cttcataagg ggccaagatt accggatgac taataatgaa tatactattt
     1141 acggaatcat caccgaatat aggtggtcag gaattacagg ctgttgctca aatgaaggcc
     1201 ctgaagaaaa tggggcattc agttctgctt gtctgcaggg agaacagcaa aattgctttt
     1261 gaagccagta agtttggaat tgatatcaca ttcgcgttat ttcgaaacag tcttcacatt
     1321 cctactgtat ggagattact cggaatagtt catagttttc agcccgatgc aatcgtttgt
     1381 cacagtggac atgatagtaa tattgttggt ttggtacggt tttttacctg gaaacatcca
     1441 ttcagaatta tcaggcaaaa gacatatttg acacgaaaaa caaaattttt ttcaataaat
     1501 catttttgcg atgaggtgat tgttcccgga acaaatatga agacacatct ggagcaggaa
     1561 ggatgtcgaa ctcgggttac tgttgtgcct cctggctttg atttccagga attatacgtt
     1621 gattcccgaa acagtttgcc tccgagtgtt ctttcctggc tggcatcccg aagaggatgc
     1681 cccgtaattg ctcaggtagg aatgttgcgc ccggaaaaag ggcacgaatt tatgttgaat
     1741 ttactgttcc atttaaaaat gaatggacga cagttctgtt ggttgattgt ggggtctggt
     1801 tcacctgaac tgcgggaaca tttacagtat cagattgaca gtatgggcat gcatgatgat
     1861 gtttttattg ctgacaatgt ttttcctgcc gcccccgtat atcgggttgc cagtctggtg
     1921 gttctgcctt cagaaaacga atcttttggt atggtgctgg cagaagcatc ggcattttct
     1981 gtgcctgtag tggccactca gattggtgga atccctgagg ttattcagaa caaccagacc
     2041 gggacattgt taccagcagg taataagcac gcatggatgt gcgccctgaa taattttttt
     2101 aatgaccctg ggcgttttta tcagatggct cgcctggcaa aacaggatat agaagagcgg
     2161 tttgatatta ataaaactgc gttaaaaata ctcacattag cgaagcaaaa gtaacaatat
     2221 gttttctata agtaacttat catttatcgg tttccttaaa aggattattt tttctcagat
     2281 tcactaccgg ggaagtggga acacagaaaa tttcggttca tgtacatttt gcgatgttct
     2341 ataaatccgg ttgtcagtat tcgatattat tatgaactgc gttccttgcc gtgcattgag
     2401 gatattctgg caatacaccc cacgttgcca gcaagaattc atcgccctta tttgcataaa
     2461 ggggggcgcg cctggacccg tggacaatat attcttgagc attatcgctt tgtgcaaaat
     2521 ttgccagaaa aatattctaa atttttgttt ccacaaaaat cggtatcatt agtccaattc
     2581 atcgggaaag atggagagaa ttttgatatc cagtgttctc ccagtggttt tgaccgggaa
     2641 ggagagttga tgttgtcatt gttttacaat aaaacagtta tt
//
LOCUS       DADMJB010000275         2668 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.278, whole genome shotgun sequence.
ACCESSION   DADMJB010000275 DADMJB010000000
VERSION     DADMJB010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2668)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2668)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2668
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.278"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            231..770
                     /locus_tag="JN078_004107"
     CDS             231..770
                     /locus_tag="JN078_004107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015870862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HAY9043092.1"
                     /translation="MSHGGWKEISHPQTLFTRQKGDGWTVVPKNLRIDFYTKDNDFTK
                     GLSVLSEVNKRHTEAQKGLTPSLNISKDDLKVLANARNIPQSKLEEEMMSQAIYRKEY
                     ATSNEKIKNYALYYHEQAQNIIQRHQDGLGNKNIDIAFITDKNHKKHLSDIFKVINES
                     GVKYDVIHFGACRVNREEK"
     gene            complement(996..1319)
                     /locus_tag="JN078_004108"
     CDS             complement(996..1319)
                     /locus_tag="JN078_004108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nikA protein"
                     /protein_id="HAY9043093.1"
                     /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLR
                     AAALGKNVNSLTDDRVLKEVMRLGALQKKLFIDGKRIGDREYAEVLIAITEYHRALLS
                     RLMAD"
     gene            1592..1786
                     /locus_tag="JN078_004109"
     CDS             1592..1786
                     /locus_tag="JN078_004109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="HAY9043094.1"
                     /translation="MNKQQQAVLNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHEL
                     AEELQNSIQTRFEVENSTER"
BASE COUNT          862 a          657 c          564 g          585 t
ORIGIN      
        1 aaaaaaaaac aataaaaaac accgcaaaaa tggattgtta acaaatgaaa atactcaatt
       61 cgaatctcat aacaaacata tcatcaacaa taagaaatca ccttctaaca tcatccaaaa
      121 atataaaaac acacccatca ccaaacatgg acgtaacaag tcatcgtcgt ttattccaga
      181 aagacggaat aggattgagc caaacaggaa aagcaacaca acttgtcatt atgtcgcatg
      241 gtggatggaa agagatctcc catccacaaa cactattcac gcgtcaaaaa ggcgatggat
      301 ggactgtagt ccccaaaaac ctaagaattg atttttatac aaaagacaac gacttcacaa
      361 agggactaag cgttctttca gaggtaaaca aacgccatac tgaagctcaa aaagggttaa
      421 caccatcact aaacataagc aaagatgacc taaaagttct agcgaacgcg cgcaatatac
      481 ctcaatcaaa attagaagaa gaaatgatgt cacaagccat atatagaaaa gaatacgcaa
      541 caagtaatga gaagataaaa aactatgctc tatattacca tgaacaagcc caaaatatta
      601 tacaaagaca tcaagatggc ttaggaaaca aaaatattga tatagcattt ataactgata
      661 aaaatcataa gaagcacctt tctgacatat ttaaagtaat aaatgaatca ggagtaaaat
      721 atgatgtaat tcactttggc gcttgccgag taaatagaga ggagaaataa tcatcattta
      781 ccataatccc ttaattgtac gcaccactga aacgcgctga acgcgattct gacgcagaca
      841 ccacaaaaat agatgtttta ccccggaaaa acaggaagga tgcgtcagga tcgttttcag
      901 ctcgctgcat agctatgcat gaaagcgaat ggagatcact ttgggagctt accgtgttca
      961 taccgtctgt tttcaacagt tttctccccg ggaagctaat ctgccataag cctggataac
     1021 agggcacggt gatactccgt aatagcgatc agcacctccg catactccct gtccccgata
     1081 cgcttgccgt cgataaagag ttttttctgt aacgccccca gtctcataac ttctttcagt
     1141 acccgatcat cagtcagtga gttaacgttc ttaccgagag ctgccgcccg taaaaaaccg
     1201 gaaacggtct tgccgcattc agcagccctt tttctgattt cctggtcttc ttctgccgtc
     1261 agacgaacag ggcgactgat agcccgcctg cgcgtattac ttccacttcg ttttgtcata
     1321 aaacatggct ccgtatctga catgggtgtc ggggcaaagc cctgaccagg gcaattgtaa
     1381 tagcgtgcat gtatgcgcgg tataacaatt gcacatcctg tcctgtcagc aagctcgaat
     1441 taccgacaaa ggcacggcag ttttttggca gttacagtgt tgtctgacag aaatgcccgt
     1501 caaaaagcca ggcggcagca aaacagtcga aaagtggtac gcgatataat cacataacgc
     1561 agatgacaga cagaacggag aaaacgaaaa gatgaacaag cagcagcaag ccgtactcaa
     1621 catggcggga ttcataaaaa gccagagcct gacgctgctc gaaaaactgg acgcactcga
     1681 tgctgacgag caggccacca tgtgtgagaa actacacgaa ctcgcagaag aactccagaa
     1741 cagcatacag acacgctttg aagtagaaaa tagcacagag agataacgct caggacagga
     1801 tgtcgaacgg cacaacagag cgtaaggaga aaatgtcaca taaggcgctc ttccgcttcc
     1861 tcgctcactg actcgctacg ctcggtcgtt cgactgcggc gagcggtatc cgctcactca
     1921 aaggcggtaa tgcggttatc cacagaatca ggggataacg ccggaaagaa catgtgagca
     1981 aaaagccgaa ggcagggaca aaggccgcgc aggtggcgtt tttccatagg ctccgccccc
     2041 ctgacgagca tcacaaaaat cgacgctcaa gtcagaggtg gcgaaacccg acaggactat
     2101 aaagatacca ggcgtttccc cctggaagct ccctcgtgcg ctctcctgtt ccgaccctgc
     2161 cgcttaccgg atacctgtcc gcctttctcc cttcgggaag cgtggcgctt tctcatagct
     2221 cacgctgttg gtatctcagt tcggtgtagg tcgttcgctc caagctgggc tgtgtgcacg
     2281 aaccccccgt tcagcccgac cgctgcgcct tatccggtaa ctatcgtctt gagtccaacc
     2341 cggtaagaca cgaattatcg ccactggcag cagccactga taaccgaatt agaggagtaa
     2401 gacttgaagt catgcgcctg ttaaggctaa actgaaagaa caagttttgg tgactgcgct
     2461 cctccaagcc agttacctcg gctcaaagag ttggtatctc tgagaacctt cgaaaaaccg
     2521 ccttgcaggg cggttttttc gtttacaggc agtagattac gcgcagaaaa aaaggatctc
     2581 aagaagaacc tttaattttt tttcacactt ggtatcctac tttaacccat aaaataaaca
     2641 cttacaccga cacgccctta aacaaaag
//
LOCUS       DADMJB010000276         2645 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.279, whole genome shotgun sequence.
ACCESSION   DADMJB010000276 DADMJB010000000
VERSION     DADMJB010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2645)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2645)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2645
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.279"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            153..857
                     /locus_tag="JN078_004110"
     CDS             153..857
                     /locus_tag="JN078_004110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001706993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9043095.1"
                     /translation="MWFETGDNGNEYFKWRSRQSTTTKDLMTLKWDALNILVNAVING
                     SLGVGSTNALGGSSIVLGDNDTGFKQNGDGILDVYANSQRVFRFQNGVAIAFKNIQAG
                     DGKKFMLSSSNNSTKNATFNLWGASTRPVVAELGNEAGWHFYSQRNTDNSVIFSVNGQ
                     IQPSNWGNFDSRYVKDVRLGTRVVQLMARGGRYEKAGHAITGLRIIGEVDGDDEAIFR
                     PIQKYINGTWYNVAQV"
     gene            826..1389
                     /locus_tag="JN078_004111"
     CDS             826..1389
                     /locus_tag="JN078_004111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000930007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HAY9043096.1"
                     /translation="MAHGITSHRCKLCSILKNIKSGNPKTKEQYQLTKNFDVIWLWSE
                     DGKNWYEEVNNFQDDTIKIVYDENNIIVAITKDAPTLNPEGFSVVEIPDITANRRADD
                     SGKWMFKDGTVVKRIYTADEQQQQAESQKVALLSEAESVIQPLERAVRLNMAMDEERT
                     RLESWERYSVLVSRVDTANPEWPQKPE"
     gene            complement(1418..1951)
                     /locus_tag="JN078_004112"
     CDS             complement(1418..1951)
                     /locus_tag="JN078_004112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000972171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HAY9043097.1"
                     /translation="MMHLKNITAGNPKTKEQYQLTKQFNIKWLYSDDGKNWYEEQKNF
                     QPDTLKMVYYHNGVIICIEKDVSAINPEGASVVELPDITANRRADISGKWLFKDGVVI
                     KRTYTEEEQRQQAENEKQSLLQLVRDKTQLWDSQLRLGIISDENKQKLTEWMLYAQKV
                     ESTDTSSLPVTFPEQPE"
     gene            complement(1954..2511)
                     /locus_tag="JN078_004113"
     CDS             complement(1954..2511)
                     /locus_tag="JN078_004113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000863301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9043098.1"
                     /translation="MAGVGFDGSSDISISAKNVNAFALRQTGNTVNGDTSVGWNWDSG
                     AYNALIGGASALILHFNINAGSCPAVQFRVNYKNGGISYRSARDGYGVELGWSDFYTT
                     TRKPSAGDVGAYTRAECNSRFITGIRLGGLSSVQTWNGPGWSDRSGYVVTGSVNGNRD
                     ELIDTTQARPIQYCINGTWYNAGSI"
BASE COUNT          754 a          565 c          587 g          739 t
ORIGIN      
        1 taaacagggc tggtaacgcc gtgcaaaaaa atggcgatac cttgtccggt gggcttactt
       61 ttgaaaatga ctcaatcctt gcctggattc gaaatactga ctgggcgaag attggattta
      121 aaaatgatgc cgatggtgac actgattcat acatgtggtt tgaaacaggc gacaacggca
      181 atgaatattt caaatggaga agccgccaga gcaccacaac aaaagacctg atgacgctga
      241 aatgggatgc actaaatatt cttgttaatg ctgtcattaa tggcagtctt ggagttggtt
      301 cgacgaatgc gttaggtggt agctctattg ttcttggtga taatgacacc ggatttaaac
      361 agaatggaga cggtattctg gatgtttatg ctaatagtca gcgtgtattc cgctttcaga
      421 atggagtggc tattgctttt aaaaatattc aggccgggga tggtaaaaaa ttcatgctat
      481 ccagctccaa caactccaca aagaatgcaa cgtttaattt atggggtgct tcaacccgtc
      541 cagtagttgc agagttaggc aatgaggcag gatggcattt ctatagccag cgaaatacag
      601 ataactcggt aatattttct gttaacggtc agatacagcc cagcaactgg gggaattttg
      661 attcacgcta tgtaaaagat gttcgcctgg gtacgcgtgt tgttcaattg atggcgcgtg
      721 gtggtcgtta tgaaaaagcc ggacacgcaa ttaccggatt aagaatcatt ggtgaagtag
      781 atggcgatga tgaagccatc ttcagaccaa tacaaaaata catcaatggc acatggtata
      841 acgtcgcaca ggtgtaaatt atgcagcata ttaaaaaata ttaagtccgg aaatccaaaa
      901 acaaaagaac aatatcagct aacaaagaat tttgatgtta tctggttatg gtccgaagac
      961 ggtaaaaact ggtatgagga agtaaataac tttcaggacg acaccataaa gattgtatac
     1021 gacgaaaata atattattgt tgccataacc aaagatgccc caacgcttaa tcccgaaggc
     1081 tttagtgtcg ttgagattcc agatataaca gccaatcgtc gtgccgatga ttcagggaag
     1141 tggatgttta aggacggaac tgtggttaag cggatttata cagcagacga acagcaacaa
     1201 caggccgaat cacaaaaggt cgcgttgctt tctgaagctg aaagcgttat tcagccactg
     1261 gaacgcgctg tcaggctgaa tatggcgatg gatgaggaac gcacacgact ggagtcatgg
     1321 gaacgctaca gcgttctggt cagccgtgtg gatacagcaa atcccgaatg gccacaaaag
     1381 cctgagtaaa aattaaggcc caatatcggg ccttctctca ttctggttgt tcgggaaacg
     1441 ttactggcag gctggaggtg tctgtagatt cgactttctg cgcatagagc atccactcgg
     1501 ttaatttttg tttattctcg tcggaaatga tgcccagccg tagctgtgag tcccatagct
     1561 gggttttatc cctgacaagt tgcaacaggc tttgcttttc attttccgct tgttgcctct
     1621 gctcttcctc ggtataagtt cgctttatca ctacgccatc tttgaacaac catttccccg
     1681 aaatatcagc ccggcgattt gctgtaatat caggtaattc aacgacgctt gcgccttccg
     1741 gattaattgc tgaaacatcc ttttcaatac aaataataac gccgttatgg taatagacca
     1801 ttttcaaagt gtctggctgg aaattctttt gttcctcata ccagtttttt ccatcatctg
     1861 aataaagcca tttgatgtta aattgctttg ttagctggta ttgctctttt gttttagggt
     1921 tgccagcagt aatgtttttt aagtgcatca tcgttaaata ctccccgcgt tataccacgt
     1981 cccattaatg caatactgaa ttggccttgc ctgtgttgta tcaattaatt catcacggtt
     2041 tccgttaact gaacccgtaa cgacataacc tgacctgtca gaccagccgg gaccattcca
     2101 tgtctgaaca gatgacagac cgccaaggcg aatacctgta ataaaccttg agttacattc
     2161 tgcccgcgta tatgcaccaa catctcccgc tgaaggtttt cgtgtcgtgg tatagaaatc
     2221 tgaccaacct aattcaaccc cataaccatc acgagccgac ctgtaggaaa tgccaccatt
     2281 tttataattc acacggaatt gtacggcagg acagctacca gcatttatat taaagtgaag
     2341 aattaatgca gatgcaccac caatcagggc gttatatgca ccactatccc aattccatcc
     2401 aacggatgta tcaccattaa cagtattacc tgtttgtcgg agtgcaaatg cattgacatt
     2461 tttggcacta attgagatat cgctagaacc atcaaaacca actccagcaa tttttcgtgc
     2521 tgttttcagc tttgttgcag tagcggcatt gccggacagt tccccagaaa ggccaccgct
     2581 gaatgtttgt cgattggtcc aggtattcgc tgtactgagt aacggtattt tctccccgct
     2641 tgtgc
//
LOCUS       DADMJB010000277         2580 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.281, whole genome shotgun sequence.
ACCESSION   DADMJB010000277 DADMJB010000000
VERSION     DADMJB010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2580)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2580)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2580
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.281"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..2271
                     /locus_tag="JN078_004114"
     CDS             <1..2271
                     /locus_tag="JN078_004114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
                     /protein_id="HAY9043099.1"
                     /translation="NKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAE
                     KDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIPTLF
                     TNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQASSWNTISSYL
                     QRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSS
                     AIVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLP
                     MMQRPRHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYAL
                     GIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRY
                     TNDGYFSFDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRN
                     ISVGVSGQQWGIGYSLNYQYSRYTDENNDRALSLNLSIPLERWLPRSRVSYQMTSQKD
                     RPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAGYSYGNDS
                     SQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVIP
                     YLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRN
                     GKPLPFGALASNDDTGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFNTP
                     DSEPTTSVLQGTAQCH"
     gene            2282..>2580
                     /locus_tag="JN078_004115"
     CDS             2282..>2580
                     /locus_tag="JN078_004115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY9043100.1"
                     /translation="MKRAPLITGLLLISTSCAYASSGGCGADSTSGATNYSSVVDDVT
                     VNQTDNVTGREFTSATLSSTNWQYACSCSAGKAVKLVYMVSPVLTTTGHQTGYYKL"
BASE COUNT          720 a          623 c          603 g          634 t
ORIGIN      
        1 aataaaaaga aggtttcaca gaaaaaaatt acatttaccg ccaatgcaga gcaacttctg
       61 cagccacagt ttacggtaga acaactacgt gagctgggta ttaaggtgga tgaaatcccg
      121 gcgctggctg aaaaagatga cgatagcgtg atcaactcgc ttgaacaaat cattcccggt
      181 acagctgctg aatttgattt caatcatcag cgacttaatt tgagcattcc ccaaattgca
      241 ctgtaccgtg atgcaagagg ttacgtctcc ccttctcgtt gggacgatgg tataccaacg
      301 ctgtttacca actactcgtt tacaggttct gataaccgtt accgccaggg caatcgtagc
      361 caacgacagt acctgaatat gcaaaatggt gctaattttg gcccctggcg attacgtaac
      421 tattctacgt ggacacgcaa cgatcaggcg tcaagctgga acactatcag tagttattta
      481 caacgtgata tcaaggcgtt gaagtctcag ttgcttctgg gagaaagcgc caccagcggc
      541 agtatttttt ccagctacac ctttactggc gtgcaactcg cttccgacga taatatgttg
      601 ccaaacagcc agcgcggatt tgccccaacg gtacgcggta tcgcaaacag tagtgcaatc
      661 gtgactatca ggcaaaatgg ttatgtgatc tatcaaagca acgtgccagc gggtgccttt
      721 gaaattaacg atctctaccc ctcttccaac agcggcgatt tagaagtcac gattgaagaa
      781 agtgacggta cacaacgtcg ctttatccag ccttattctt cattacccat gatgcagcga
      841 cctaggcatc taaaatatag cgcgaccgct ggacgctatc gcgctgatgc aaacagtgat
      901 agcaaggaac ccgaatttgc tgaagccacg gcaatatatg gtttgaataa tacttttacg
      961 ctgtatggcg gcctgctcgg ttctgaagat tattatgcgc tggggatcgg tatcggcggc
     1021 acacttggcg cactgggcgc gttgtcgatg gatatcaaca gagctgacac ccaattcgat
     1081 aaccagcact cttttcatgg ctatcaatgg cgtacgcagt acatcaaaga tatcccggaa
     1141 accaacacca atatcgctgt tagctactat cgctatacca acgatggcta ttttagtttt
     1201 gatgaagcca atacccgcaa ttgggactat aacagtcgcc aaaaaagtga aattcaattc
     1261 aacatcagcc agacaatatt tgatggggta agtctgtatg cctccggttc gcagcaagac
     1321 tattggggca ataacgagaa aaacaggaat atctctgttg gggtttccgg ccagcaatgg
     1381 ggaattggtt acagcctgaa ttatcaatac agccgctaca ctgatgaaaa taatgaccgt
     1441 gcactctctt tgaatctcag tattccgtta gaacgctggt taccgcgtag ccgggtttcc
     1501 tatcagatga ccagccagaa agatcgccca acccaacatg aaatgcgtct tgatggctca
     1561 ctgctggatg atggtcgcct gagctatagc ctggaacaaa gtctggatga cgataacaac
     1621 cataacagta gcctgaacgc cagttaccgt tcaccttatg gaaccttcag tgccggatac
     1681 agttacggta atgacagcag ccaatacaat tacggcgtta ccggcggcgt ggttatccat
     1741 cctcatggcg tgacgctctc gcaatatctg ggcaacgctt ttgcgcttat cgatgctaac
     1801 ggggcttctg gcgtgaggat acaaaactat ccggggattg ctactgatcc ctttggctat
     1861 gcagtgattc cttatctcac gacttatcag gaaaaccgtc tctcggtaga tactacgcag
     1921 ctgcccgata acgtcgatct tgaacaaaca acacagtttg tggtgcccaa cagaggtgca
     1981 atggtagcgg cgcgtttcaa cgccaatatc ggttatcgcg tacttgttac agtcagcgat
     2041 cgcaacggta aaccgttgcc ctttggcgct cttgccagca acgatgatac ggggcaacaa
     2101 agtatcgtcg atgagggcgg catactatat ctctctggga tatcgagtaa atcacaaagc
     2161 tggactgtac gctggggaaa tcaggcagat caacaatgtc agtttgcttt taatacaccg
     2221 gattcagaac caacaacctc tgtattacaa ggtacagcgc agtgccatta aggataaaaa
     2281 aatgaaaaga gcgcctctta taacaggact tttgttgata tccacatcct gcgcttatgc
     2341 ctcctcagga gggtgtggag ccgacagcac tagcggtgcg acaaattaca gcagtgtggt
     2401 tgatgatgtt acggtgaacc agacagataa cgtgacagga cgggagttta cctctgcaac
     2461 gctaagtagc actaactggc aatacgcctg ttcctgctct gcgggtaagg cagttaaact
     2521 tgtctatatg gtcagccccg tacttaccac cactggacat cagacaggat attacaaact
//
LOCUS       DADMJB010000278         2507 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.282, whole genome shotgun sequence.
ACCESSION   DADMJB010000278 DADMJB010000000
VERSION     DADMJB010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2507)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2507)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2507
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.282"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..323
                     /locus_tag="JN078_004116"
     CDS             <1..323
                     /locus_tag="JN078_004116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2612 domain-containing protein"
                     /protein_id="HAY9043101.1"
                     /translation="APFYNGKSDTRTVDLSDAVYRRLILMKAMSNITDCSVPDINRML
                     RFMFGKKRRAYVLNNGGLRMSYIFESALSLAELAIIQSSGALPSPPGVYVSVVLKESR
                     NEGQ"
     gene            310..840
                     /locus_tag="JN078_004117"
                     /pseudo
     CDS             310..840
                     /locus_tag="JN078_004117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001748478.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
     gene            1174..1695
                     /locus_tag="JN078_004118"
     CDS             1174..1695
                     /locus_tag="JN078_004118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9043102.1"
                     /translation="MDVYANSQRVFRFQNGVAIAFKNIQAGTARKFTLSSANNSTKNA
                     AFYLWGNPSRSVVAELGDDSGWHFFSQRNTDNSITFAVNGQVIPLNYGNFDARYKYRT
                     EGVQDVRYGHEMYYSPGSNTVSWRFRAPSGHGLSGIAISDTGRDSADNVNGVYYRPLQ
                     KLINGTWYNVASV"
     gene            1755..2243
                     /locus_tag="JN078_004119"
     CDS             1755..2243
                     /locus_tag="JN078_004119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HAY9043103.1"
                     /translation="MTKQYDVTWLFSKDGKNWYEELKNFASDTIKITYTGDGRVVWVG
                     KDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVS
                     ARTGEWEEDLLLGLISDEDREKLKAYRIYAKSLQAMDFSVITDKTSYNAIEWPASPEI
                     SS"
     gene            2267..>2507
                     /locus_tag="JN078_004120"
     CDS             2267..>2507
                     /locus_tag="JN078_004120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707257.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9043104.1"
                     /translation="MSVVISGALTDGAGIPMSGYHIILKSRVNTPEVVMHTVADVMTG
                     NDGEYCFHARTGKYGVYLKPGWHNEYNVGDIAVYED"
BASE COUNT          659 a          554 c          682 g          612 t
ORIGIN      
        1 aggcaccgtt ttacaacgga aaatcggata cccggactgt tgacctgtct gatgctgtat
       61 accggcggct gatactgatg aaagccatgt cgaacattac tgactgttcc gttccggata
      121 ttaaccggat gctgagattt atgttcggaa aaaaacggcg agcttatgtt ctgaataatg
      181 gtgggctgag gatgagttac atctttgagt ccgcgctctc gttggcagaa ctggcgatta
      241 tccagtcgtc gggtgcactg ccgtccccgc cgggtgttta tgtttcagta gttttaaagg
      301 agtcccgtaa tgaaggccag tgataaaccc cgccagctgg cggtcccctt tgcgagtacc
      361 ggagataaaa accgtatccc ggacaaggcg acacagcaga ccagagagag cggtaatgct
      421 gcgtatgatt caggttttcc tccggtgacc atgacagcgg tctcagcggg aggtataccg
      481 ccacacggca aggattttaa cggtctgatg tacgatatta ccgcagcaat acggttcgcc
      541 caggctggcg gtttgtacac gtataatgcc ggttttgcgg gggccattgg tggatatgca
      601 aaaggagcca ttctcgccgg agtcgcaaca acagcggtct ggctgaatac cacagacgat
      661 aacctgaccg atcctgaagg ctccgacagt gcgggctggg taaatcttct tgaggatccg
      721 aaaaggatat tcctgcggca gaagaacaat ctgtcagacc ttcagaataa agggacggta
      781 cgggataatc ttcaggttta cagtaaagag cagtcagatc aacgctatgt tcatcgggaa
      841 ggcgataaaa taaccggaga gctgaaaatc cgtggtgtta atgcgctgag gattttcaac
      901 gaagcttttg gcctgatttt tcgtcgttcg gaagagtgcc tgcaccttat tcccaccagt
      961 gaaggtcagg gggaaaatgg cgatattggt cccctgcgcc cgttcaccat taatttgcgg
     1021 acgggtgaaa tatccatgtc gcataaagtg tctgttggcg gtggttcgca ggtcaatggt
     1081 gcgctgggta tcggcgttca gaacgccctg ggggggaatt caattgttct tggtgataat
     1141 gacaccggat ttaaacagaa tggagacggt attctggatg tttatgctaa tagtcagcgt
     1201 gtattccgct ttcagaatgg agtggctatt gcttttaaga atattcaggc cggaactgcc
     1261 agaaaattca cgttatccag cgccaacaac tccacgaaaa atgcagcgtt ttatttgtgg
     1321 ggtaatccat ccaggtctgt tgttgcagag cttggcgatg attcaggctg gcattttttc
     1381 agccagagga atacagataa cagcatcacg ttcgccgtaa acggacaggt aattccgtta
     1441 aattacggaa acttcgatgc ccgctataaa tatcgaacag agggggtaca ggatgtacgg
     1501 tatggccatg aaatgtatta cagccccggc agtaacaccg tttcgtggag atttcgcgca
     1561 ccttcgggac acgggctgtc agggatagcg atatcggata ccggccgtga ctcagcggat
     1621 aacgtcaacg gcgtgtatta ccgcccgctt cagaaactga ttaatggcac ctggtataac
     1681 gtggcgagtg tttaacaatg ttgcatttaa aaaatattac tgcgggcaat ccgaaaaccg
     1741 tggaacaata tcagctgaca aaacaatatg atgtcacctg gcttttttcg aaagacggaa
     1801 aaaactggta tgaagagctg aagaatttcg ccagcgacac aattaaaata acttacaccg
     1861 gagacggtcg cgtggtgtgg gtcggtaagg atgtgactgg cattgaaccc cgtaacgcca
     1921 gtgttattga agttcctgat attaccgcca accgccgcat taccgcgccg ggttactggt
     1981 tttaccgcaa tgatgaattt gtctttgact acagactcaa agcggaagat gagcgtgatg
     2041 cccttctggc tcaggtcagt gcccggacag gggaatggga agaagacctg ctgctggggc
     2101 taatcagcga cgaagaccgg gaaaaactga aagcgtaccg catttacgcg aaatcgctgc
     2161 aggcgatgga tttcagtgtc atcactgata aaacctcata caacgccatt gaatggcccg
     2221 cctctccgga aatttcttcc tgatttaatt tatcgcgaga aaaactatgt ctgtagtgat
     2281 atcaggtgcg ctgactgatg gcgcaggtat ccccatgtcc ggataccata ttattctgaa
     2341 atcccgggta aacaccccgg aagtggtgat gcacactgtt gctgatgtga tgacaggaaa
     2401 cgatggtgaa tactgtttcc atgcgcggac tggaaaatat ggtgtgtatc tgaaaccggg
     2461 ctggcacaac gagtacaacg ttggcgacat tgctgtatat gaggact
//
LOCUS       DADMJB010000279         2468 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.283, whole genome shotgun sequence.
ACCESSION   DADMJB010000279 DADMJB010000000
VERSION     DADMJB010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2468)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2468)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2468
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.283"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            128..1264
                     /gene="potA"
                     /locus_tag="JN078_004121"
     CDS             128..1264
                     /gene="potA"
                     /locus_tag="JN078_004121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     ATP-binding protein PotA"
                     /protein_id="HAY9043105.1"
                     /translation="MGQSKKLNKQPSSLSPLVQLAGIRKCFDGKEVIPQLDLTINNGE
                     FLTLLGPSGCGKTTVLRLIAGLETVDSGRIMLDNEDITHVPAENRYVNTVFQSYALFP
                     HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLETFAQRKPHQLSGGQQQRVAIAR
                     AVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI
                     VVMREGRIEQDGTPREIYEEPKNLFVAGFIGEINMFNATVIERLDEQRVRANVEGREC
                     NIYVNFAVEPGQKLHVLLRPEDLRVEEINDDNHAEGLIGYVRERNYKGMTLESVVELE
                     NGKMVMVSEFFNEDDPDFDHSLDQKMAINWVESWEVVLADEEHK"
     gene            1248..2111
                     /gene="potB"
                     /locus_tag="JN078_004122"
     CDS             1248..2111
                     /gene="potB"
                     /locus_tag="JN078_004122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309597.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotB"
                     /protein_id="HAY9043106.1"
                     /translation="MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFV
                     KMVFTLDNYTRLLDPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLL
                     FLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYI
                     LLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPA
                     MGLFYVSDLMGGAKNLLIGNVIKVQFLNIRDWPFGAATSITLTIVMGLMLLVYWRASR
                     LLNKKVSELDD"
     gene            complement(2343..2414)
                     /locus_tag="JN078_004123"
                     /pseudo
     CDS             complement(2343..2414)
                     /locus_tag="JN078_004123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001387760.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
BASE COUNT          593 a          605 c          621 g          649 t
ORIGIN      
        1 ctaagccagt aattcacaac aaagattggc gattcaagcg gtttgccgta gaattaccgc
       61 cctcattaag agtcaccaag gtggttaacc acaaaccccg catcggtaag ccatccgttg
      121 cgtttacatg ggacagagta aaaaattgaa taaacaaccg agttcgcttt caccgctggt
      181 gcaattggcg ggaattcgca aatgctttga tggtaaagag gtcattcccc agctggatct
      241 gactatcaac aatggcgagt tcctcacgct gcttggccct tctggctgcg gtaaaacaac
      301 cgttcttcgc ctgattgcag gtctggaaac tgttgattcc ggacgcatca tgctggataa
      361 cgaggacatc acccacgttc cggcggaaaa ccgctatgtg aacactgttt tccaaagcta
      421 cgcacttttc ccccacatga ccgtgttcga aaatgtggcc tttgggttgc gcatgcaaaa
      481 aacccccgct gctgaaatta cgccccgcgt gatggaagcc ctgcggatgg tgcaactgga
      541 aaccttcgct caacgtaaac cgcatcagct ctctggtggt caacagcaac gcgtcgccat
      601 tgctcgcgcg gtggttaaca agcctcgtct gttgttgctg gatgagtcgc tctcagcgct
      661 ggattacaaa ctgcgtaagc aaatgcagaa cgagctgaaa gcgttacagc gtaagcttgg
      721 cattacattc gtcttcgtga ctcacgacca ggaagaagca ctcaccatgt cagacaggat
      781 tgtggtgatg cgcgagggtc gcattgagca agacggcacg ccgcgtgaaa tctacgaaga
      841 gccgaaaaac ctgtttgttg ccggcttcat tggcgaaatt aatatgttta acgccacggt
      901 gatcgagcga ctcgacgagc agcgcgtacg cgccaacgtt gaaggccgcg aatgtaatat
      961 ctacgttaac ttcgccgttg aaccggggca aaaactgcat gttctgctgc gcccggaaga
     1021 cttacgtgtt gaagagatta acgacgacaa ccacgctgaa gggctgattg gttacgttcg
     1081 tgagcgtaac tacaaaggca tgacgctgga gtcggttgtt gaactggaaa atggcaagat
     1141 ggtgatggtc agcgaattct tcaatgaaga cgatcctgac tttgaccact ctctcgacca
     1201 aaaaatggcc attaattggg tagaaagctg ggaggtcgta ctggctgatg aagaacacaa
     1261 gtaagttcca gaatgtagtg attgtcacta ttgtcggttg gcttgtgttg tttgtctttc
     1321 tgcccaacct gatgatcatt ggcaccagct ttttgacccg cgacgacgcc agtttcgtca
     1381 aaatggtctt tacgctggat aactacacgc gtctgctcga tccgctctat tttgaagtgc
     1441 tattgcactc gctgaatatg gcgctgatcg ccaccctcgc ctgcctggtg ctgggctatc
     1501 catttgcctg gtttctggcg aagctgccac acaaggtgcg tccgctgctg ctgtttctgc
     1561 tgattgttcc gttctggacc aactcattga ttcgtatcta cgggctgaaa attttcctca
     1621 gcaccaaagg ctatctcaac gagtttttgc tctggctggg cgttatcgac acaccaatcc
     1681 gtatcatgtt cacgcccagt gcggtgatta tcggtctggt ttacattctg ctgccgttta
     1741 tggtgatgcc gctgtactcc agtatcgaaa aactggataa gccgttgctt gaggcggcgc
     1801 gcgatctcgg tgccagcaag ttacagactt ttatccgcat aattattcca ctgacgatgc
     1861 cggggattat tgccggatgt ctgctggtga tgctgccagc gatgggcctg ttctatgtgt
     1921 ccgacctgat gggcggtgcg aaaaacctgc tgatcggtaa cgtcatcaag gtacagttcc
     1981 tcaatattcg tgactggccg tttggtgcag ccaccagcat tacgctgact atcgtaatgg
     2041 gcctgatgtt gctggtttac tggcgcgctt ctcgtttgct gaataagaag gtgagcgaat
     2101 tagatgatta atcatttata ttcaatgcat taagtttgtt tttgagtggt tttgccgttt
     2161 aaggtaacgg cgttatagat cctatcaaaa tcaatcaatt ccattctggt tttggcgaaa
     2221 gatttttcga gagcttcggt ctttaactaa aactgattgc gtataacccc aatacccctc
     2281 cccgactatc tgaattgtcg gggaggcact tcacgcacaa aatatcatcc ctgcgccgtt
     2341 gattactctg caggtgaagt cggccactca atatcaggtg cagttgatgt atcaacacgg
     2401 ttcagcaaca cctgaagtgg cacactgaat ttggccacct gaacagaggt gatatgctca
     2461 cctcagaa
//
LOCUS       DADMJB010000280         2454 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.284, whole genome shotgun sequence.
ACCESSION   DADMJB010000280 DADMJB010000000
VERSION     DADMJB010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2454)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2454)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2454
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.284"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..2354
                     /locus_tag="JN078_004124"
     rRNA            <1..2354
                     /locus_tag="JN078_004124"
                     /product="23S ribosomal RNA"
BASE COUNT          635 a          534 c          773 g          512 t
ORIGIN      
        1 tgtataatgg gtcagcgact tatattctgt agcaaggtta accgaatagg ggagccgaag
       61 ggaaaccgag tcttaactgg gcgttaagtt gcagggtata gacccgaaac ccggtgatct
      121 agccatgggc aggttgaagg ttgggtaaca ctaactggag gaccgaaccg actaatgttg
      181 aaaaattagc ggatgacttg tggctggggg tgaaaggcca atcaaaccgg gagatagctg
      241 gttctccccg aaagctattt aggtagcgcc tcgtgaattc atctccgggg gtagagcact
      301 gtttcggcaa gggggtcatc ccgacttacc aacccgatgc aaactgcgaa taccggagaa
      361 tgttatcacg ggagacacac ggcgggtgct aacgtccgtc gtgaagaggg aaacaaccca
      421 gaccgccagc taaggtccca aagtcatggt taagtgggaa acgatgtggg aaggcccaga
      481 cagccaggat gttggcttag aagcagccat catttaaaga aagcgtaata gctcactggt
      541 cgagtcggcc tgcgcggaag atgtaacggg gctaaaccat gcaccgaagc tgcggcagcg
      601 acgctgatgc gttgttgggt aggggagcgt tctgtaagcc tgtgaaggtg tgctgtgagg
      661 tatgctggag gtatcagaag tgcgaatgct gacataagta acgataaagc gggtgaaaag
      721 cccgctcgcc ggaagaccaa gggttcctgt ccaacgttaa tcggggcagg gtgagtcgac
      781 ccctaaggcg aggccgaaag gcgtagtcga tgggaaacag gttaatattc ctgtacttgg
      841 tgttactgcg aaggggggac ggagaaggct atgttggccg ggcgacggtt gtcccggttt
      901 aagcgtgtag gctggttttc caggcaaatc cggaaaacta aggctgaggc gtgatgacga
      961 ggcactacgg tgctgaagca acaaatgccc tgcttccagg aaaagcctct aagcatcagg
     1021 taacatcaaa tcgtacccca aaccgacaca ggtggtcagg tagagaatac caaggcgctt
     1081 gagagaactc gggtgaagga actaggcaaa atggtgccgt aacttcggga gaaggcacgc
     1141 tgatatgtag gtgaagtccc tcgcggatgg agctgaaatc agtcgaagat accagctggc
     1201 tgcaactgtt tattaaaaac acagcactgt gcaaacacga aagtggacgt atacggtgtg
     1261 acgcctgccc ggtgccggaa ggttaattga tggggtcagc gcaagcgaag ctcttgatcg
     1321 aagccccggt aaacggcggc cgtaactata acggtcctaa ggtagcgaaa ttccttgtcg
     1381 ggtaagttcc gacctgcacg aatggcgtaa tgatggccag gctgtctcca cccgagactc
     1441 agtgaaattg aactcgctgt gaagatgcag tgtacccgcg gcaagacgga aagaccccgt
     1501 gaacctttac tatagcttga cactgaacat tgagccttga tgtgtaggat aggtgggagg
     1561 ctttgaagtg tggacgccag tctgcatgga gccgaccttg aaataccacc ctttaatgtt
     1621 tgatgttcta acgttgaccc gtaatccggg ttgcggacag tgtctggtgg gtagtttgac
     1681 tggggcggtc tcctcctaaa gagtaacgga ggagcacgaa ggttggctaa tcctggtcgg
     1741 acatcaggag gttagtgcaa tggcataagc cagcttgact gcgagcgtga cggcgcgagc
     1801 aggtgcgaaa gcaggtcata gtgatccggt ggttctgaat ggaagggcca tcgctcaacg
     1861 gataaaaggt actccgggga taacaggctg ataccgccca agagttcata tcgacggcgg
     1921 tgtttggcac ctcgatgtcg gctcatcaca tcctggggct gaagtaggtc ccaagggtat
     1981 ggctgttcgc catttaaagt ggtacgcgag ctgggtttag aacgtcgtga gacagttcgg
     2041 tccctatctg ccgtgggcgc tggagaactg aggggggctg ctcctagtac gagaggaccg
     2101 gagtggacgc atcactggtg ttcgggttgt catgccaatg gcactgcccg gtagctaaat
     2161 gcggaagaga taagtgctga aagcatctaa gcacgaaact tgccccgaga tgagttctcc
     2221 ctgactcctt gagagtcctg aaggaacgtt gaagacgacg acgttgatag gccgggtgtg
     2281 taagcgcagc gatgcgttga gctaaccggt actaatgaac cgtgaggctt aaccttacaa
     2341 cgccgaaggt gttttggcgg atgagagaaa gattttcagc ctgatacaga ttaaatcaga
     2401 acgcagaagc ggtctgataa aacagaattt gcctggcggc cgtagcgcgg tggt
//
LOCUS       DADMJB010000281         2444 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.285, whole genome shotgun sequence.
ACCESSION   DADMJB010000281 DADMJB010000000
VERSION     DADMJB010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2444
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.285"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..753)
                     /locus_tag="JN078_004125"
     CDS             complement(<1..753)
                     /locus_tag="JN078_004125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HAY9043107.1"
                     /translation="MRVLLRPVLVPELGLVVLKPGRESMPVFHNTRVLVEPEPKSMRN
                     LPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSDWLLRHIKSCQWPHGDYHH
                     SETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHAISGTQERE
                     LSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQR
                     TKNLALLPHAHQQQNPPQEETVVSIAVDPESPA"
     gene            complement(755..1033)
                     /locus_tag="JN078_004126"
     CDS             complement(755..1033)
                     /locus_tag="JN078_004126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043108.1"
                     /translation="MAHDTKFYNSDNSAAPASRHGRRSHAFKSDWYQHDPCTEEQAEW
                     LIQRYRRHGYEIKKALSLDYRHWIIFVRLPYSERPPRPSCTFQQRIWR"
     gene            complement(1201..1413)
                     /locus_tag="JN078_004127"
     CDS             complement(1201..1413)
                     /locus_tag="JN078_004127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Hok family toxin"
                     /protein_id="HAY9043109.1"
                     /translation="MLNTCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVT
                     RKDLCEVRIRTGQTEVAVFTAYEPEE"
     gene            complement(1616..1834)
                     /locus_tag="JN078_004128"
     CDS             complement(1616..1834)
                     /locus_tag="JN078_004128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043110.1"
                     /translation="MFKCYCTLIVGGIMKNALQFLFVAFWLFASCMPIIFTARYMEKI
                     DVLILMFGHINALFLGVFMAVMCIEYWR"
     gene            complement(2008..2343)
                     /locus_tag="JN078_004129"
     CDS             complement(2008..2343)
                     /locus_tag="JN078_004129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707879.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043111.1"
                     /translation="MARVEGELFKIARASLEAEPIAWRYRYVKKGVMDSQGELWVGDW
                     KYVPKKEDCNDRPNYEIQALFTAPPVPVTSEELVKAVHFYEQLKRENPPASGNQINGL
                     TMSVKRPAN"
BASE COUNT          579 a          639 c          572 g          654 t
ORIGIN      
        1 agccggagat tccggatcaa cggcaatgct gaccaccgtc tcttcctgtg gtggattctg
       61 ttgctggtgg gcgtgaggca gcagcgcaag attttttgtg cgctgcttca gtatgctggt
      121 ggcggtctgc tctcccggca cgatgtcgct ttcacggtac attgagcgga ttttttccgc
      181 acgcaacccc agcgaacgac gtaatactgc ttccggtagc gcgtccgcca cctgattgcg
      241 gaccgcccac caggataatt cagccagaga taattcacgc tcctgcgtac cgcttattgc
      301 gtgaccgatg acgtcaatca tccatgctga caggttttga tgagcaagtt gctcgagtga
      361 ttcggatgtc tggtcacgca actggttgtc gcagtgccag cacaacacca ttgcgccggt
      421 accataacgg tgaatgacgg tttcgctgtg atgataatcg ccgtgtggcc actggcagga
      481 tttaatatgg cgcaacagcc agtcagacaa tgcaccagca ccaccagcag cacgaatcac
      541 ccgtgcgtta ctgaaaaacg gcagcaatgt tttgtcttcc actagcggct ggcgaacggc
      601 aggaacgacc ccggacggca gattacgcat gcttttcggt tccggctcca ccagtacccg
      661 ggtattgtgg aataccggca tggattcacg gcctggctta aggaccacca gcccgagttc
      721 cggaaccaga acaggtcgaa gtaatacccg cacattacct ccagatccgt tgctggaatg
      781 tgcaggacgg acgcggtggc cgttcggaat aagggagcct gacgaagatt atccagtgac
      841 gataatcgag actgagggct ttcttaatct cgtatccgtg tctgcggtag cgctgaatca
      901 gccattcagc ctgttcttcg gtgcaggggt cgtgctgata ccagtcagat ttgaatgcat
      961 gagaacgccg cccgtgcctg ctggcaggcg cggcagagtt atccgaattg taaaatttgg
     1021 tatcgtgcgc catctgtttt ctctgctggc gcagcaggtg ccagttgttc aggctgacgg
     1081 atggattgta aaccagaacg accagaaaaa acaaaacccg ccgaagcggg ttaagtgcgg
     1141 gtgcgttgag gatgcctgac acatcagcgg tggcgaggga tttctccccc gccgggtctc
     1201 ttactcctca ggttcgtaag ctgtgaagac agcgacctcc gtctggccgg ttcggattcg
     1261 tacctcgcag aggtctttcc tcgttaccag tgccgtcact atgacggtta aacagatgac
     1321 gataagggcg attaacatcg ccttttgctg cttcatagcc tgcttctcct tgcctttcgg
     1381 cacgtaagag gctaacctac atgtgttcag catggattga gcctcagatt aatgttaagc
     1441 gtcttgcagg acgcgtagtg ttaactgggg cttttctcta tctgcctttt ggtgttcatg
     1501 cctgagacag atagcctcaa gcacccgcag tcattctact taactaagat ttccctgcaa
     1561 accgtttttg tccggcacag taaatatcca actaaaccaa tagcgttcgc tgtatttacc
     1621 gccagtattc aatgcacatg accgccatga acacccctaa aaaaagggca tttatatgtc
     1681 caaacattaa tatcaaaaca tcaatttttt ccatatacct tgctgtgaag atgatgggca
     1741 tacatgatgc gaacaaccag aacgcaacaa acaaaaactg caatgcgttt ttcattattc
     1801 cccctacaat caatgtgcaa taacatttaa acacacctca atttggccgg acatataaat
     1861 atctaaacca gaaaaaatca cttacatagc gttacaaact ctttagtcta aatactcatc
     1921 gtaaaacatt ccccatactt atcagtccgt tccgcgccag gtagcttatt gccttatctg
     1981 gcaacctata atcaggtttc cgctttttca gttggctggt cgtttaaccg acatagttaa
     2041 cccattaatc tggttgccgg atgctggtgg attttcgcgt tttagttgtt cataaaagtg
     2101 cacagcttta accagttctt ctgatgtaac cgggactggt ggggcagtga ataaggcctg
     2161 aatttcatag ttcggcctgt cgttacaatc ctcttttttc ggtacatatt tccagtcacc
     2221 aacccacaac tccccctgag agtccataac accttttttc acgtagcgat atcgccacgc
     2281 tatcggctct gcttccagcg atgcccgtgc aattttgaat aactcgccct ctactcgcgc
     2341 catccctgaa ttggggtggc atttcgtaat cgctattttt aatttggctt cttcgattaa
     2401 ttgttctttt gttaattcag tcattttcat taccgccctt tcag
//
LOCUS       DADMJB010000282         2411 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.287, whole genome shotgun sequence.
ACCESSION   DADMJB010000282 DADMJB010000000
VERSION     DADMJB010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2411)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2411)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2411
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.287"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..447
                     /gene="yeeE"
                     /locus_tag="JN078_004130"
     CDS             <1..447
                     /gene="yeeE"
                     /locus_tag="JN078_004130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transport protein YeeE"
                     /protein_id="HAY9043112.1"
                     /translation="VLIGLIALLAWPLSEATGRMFGLGITSPTANILQFLVAGDVKYI
                     NWGVFLVLGIFVGSFIAAKASREFRVRAADAQTTLRSGLGGVLMGFGASIAGGCSIGN
                     GLVMTAMMTWQGWIGLVFMILGVWTASWLVYVRPQRKARLATAAAN"
     gene            461..688
                     /locus_tag="JN078_004131"
     CDS             461..688
                     /locus_tag="JN078_004131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HAY9043113.1"
                     /translation="MAIKKLDVVTQVCPFPLIEAKAALAEMASGDELVIEFDCTQATE
                     AIPQWAAEEGHAITDYQQIGDAAWSITVQKA"
     gene            complement(731..2155)
                     /gene="sbcB"
                     /locus_tag="JN078_004132"
     CDS             complement(731..2155)
                     /gene="sbcB"
                     /locus_tag="JN078_004132"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease I"
                     /protein_id="HAY9043114.1"
                     /translation="MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGE
                     PEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYN
                     NVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
                     PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMA
                     LIDVPQMPPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSD
                     TLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLK
                     ILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPA
                     LDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLV
                     QQYADDKEKVALLKALWQYAEEIV"
BASE COUNT          581 a          575 c          621 g          634 t
ORIGIN      
        1 gtactcatcg gtttgattgc gcttttagcc tggcccctga gtgaagcaac cggacgcatg
       61 tttgggttag gaatcacttc cccaacggcc aatattctgc aatttctggt cgcgggtgac
      121 gtgaaataca ttaactgggg cgttttcctg gtgttaggga tcttcgtggg gtcatttatt
      181 gcagccaaag cgagccgtga gttccgcgtt cgcgcagctg atgcacaaac aacattacgt
      241 agcgggttag gtggtgtact gatgggcttc ggtgccagta ttgcaggtgg ttgctctatc
      301 ggtaatggac tggttatgac tgcaatgatg acctggcagg gctggattgg ccttgtattt
      361 atgattctcg gagtctggac tgcatcctgg cttgtgtatg ttcgaccgca gcgtaaggcg
      421 cgactggcga ctgctgcggc aaattaagta aggtgtaaag atggcgatta aaaagctgga
      481 tgtggtgacg caggtctgtc cgtttccact catagaagca aaagcagcac tggcagaaat
      541 ggccagcggc gatgagttgg taattgagtt tgattgcacc caggcaactg aagcaatccc
      601 acagtgggcg gcagaagaag gacatgccat caccgattat cagcagattg gcgatgcagc
      661 gtggagcatc accgttcaaa aagcctgact caacattgtc ctccgccgta ccagcggcgg
      721 aggcttcaaa ttagacgatc tcttccgcgt actgccaaag tgcttttaac agcgccactt
      781 tttctttgtc atcggcatat tgttgtacca gcatctgcaa ttcatcagca taaccctgca
      841 aaaactctgg cgtgaatacc tggcggcggt gctccagcca gcgttgctgc tcggcataat
      901 ccagcgtccc cgggaagttg cgtgcccgat aattgaacaa cagcttttca atccgtttat
      961 caacaaaagt gatatccagt gccggtaaat tacgtggctc ggtttccagc acaattttca
     1021 ttgctgcacg atctgcgtca ctgaaaaagc cgttataaag ctgtgcatcc acgttatctg
     1081 taggcgtaaa cggttcggct tccgcgaata tcgccaccac tttttcacgc acttgcggat
     1141 tttcacgcag aattttcagg ttatcgaggc aatgctgacg attaattccc agtcggtcgg
     1201 catcttccgg gcgtagcgta ttcgcctggg ccagcaccgg acatttattg atgtgcacca
     1261 gcttaaccgg aacggcggcg ttatcgccaa gatcggtttt tgcggtatat aaacgctcgc
     1321 gcaatgtgtc gctatccagt tccagtaatg gcgaaatgtc tcctgccaaa tccaccataa
     1381 ttacagcatt gcgattttca ggatgccacg ccagcggtgc cacccagctg gtattgccgc
     1441 gccatgcccc aaacattccg gaaacgtgaa ccaggggggg catctgcgga acatcaatca
     1501 acgccatcag tttgtgttta ttacgatggg taaagagata atcaaacagg cgtggctgac
     1561 gcgtttttac cagtttcgcc atcgcaatag tggcgtacac atcagccatc gcatcgtggg
     1621 cgttgctatg ttcaatacca ttcgctttgg ttaaatgctc aaggcgaaag ctcggtagac
     1681 cgtcatcatt ttcaggccag tttattcctt ccgggcgcag ggcataacag gcacgcataa
     1741 catccaacaa atcccagcgc gagttatcat gctgccagct ccaggcgtaa ggatcgtaga
     1801 aattacgata aaaaacgttg cgtgtgactt cgtcgtcgaa acgcacattg ttgtagccca
     1861 gaatacaggt cttcggtacg gtaaaaagcg agtgaatacg ggcggcaaac gcggcttcgt
     1921 tttctccttt cgcccgtgct tcctgcgggg taataccggt aattaatact gctccaggct
     1981 ggggtaaata gtcatccgcg ggcttgcagt aaaagacttc gggttcgccg atgacattga
     2041 attcgctatc ggtgcgaatg gctgcgaact gtgcagggcg atctaacgcg gggtgcgtgc
     2101 caaaggtttc gtaatcgtga aagaggaagg taggttgttt atctgtgtct gtcattgtct
     2161 agcattgtcc actgtagtta attaactgtc tgttataact cgaaaaacaa ccattttttc
     2221 acctgagtat gtctacgaac gtcaaatata gttgtttact gtgcgctgtt gtccatgtga
     2281 tattgtgtac cagatgtgta ccaaaccatt atttctgagc gtaccaaata ttatttatgg
     2341 ctataagcga cacaaaactg cgtagtattt atggtaaacc atattcgggc ccacaagaag
     2401 tggctgatgc c
//
LOCUS       DADMJB010000283         2408 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.288, whole genome shotgun sequence.
ACCESSION   DADMJB010000283 DADMJB010000000
VERSION     DADMJB010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2408
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.288"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(32..112)
                     /gene="csgC"
                     /locus_tag="JN078_004133"
                     /pseudo
     CDS             complement(32..112)
                     /gene="csgC"
                     /locus_tag="JN078_004133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309448.1"
                     /note="involved in autoagglutination of curliated cells;
                     not involved in production of curli fibers; incomplete;
                     partial in the middle of a contig; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="curli assembly protein CsgC"
     gene            complement(171..626)
                     /locus_tag="JN078_004134"
     CDS             complement(171..626)
                     /locus_tag="JN078_004134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major curlin subunit CsgA"
                     /protein_id="HAY9043115.1"
                     /translation="MKLLKVAAIAAIVFSGSALAGVVPQYGGGGNHGGGGNNSGPNSE
                     LNIYQYGGGNSALALQTDARNSDLTITQHGGGNGADVGQGSDDSSIDLTQRGFGNSAT
                     LDQWNGKNSEMTVKQFGGGNGAAVDQTASNSSVNVTQVGFGNNATAHQY"
     gene            complement(667..858)
                     /gene="csgB"
                     /locus_tag="JN078_004135"
                     /pseudo
     CDS             complement(667..858)
                     /gene="csgB"
                     /locus_tag="JN078_004135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309446.1"
                     /note="CsgB; functions as a nucleator in the assembly of
                     curli (coiled surface structures) on the cell surface;
                     incomplete; partial in the middle of a contig; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="curlin minor subunit CsgB"
     gene            1637..2287
                     /gene="csgD"
                     /locus_tag="JN078_004136"
     CDS             1637..2287
                     /gene="csgD"
                     /locus_tag="JN078_004136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator CsgD"
                     /protein_id="HAY9043116.1"
                     /translation="MFNEVHSIHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQ
                     RSLDDISSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWP
                     HINGVFYSMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHRE
                     KEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR"
     gene            2292..>2408
                     /locus_tag="JN078_004137"
     CDS             2292..>2408
                     /locus_tag="JN078_004137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curli production assembly protein CsgE"
                     /protein_id="HAY9043117.1"
                     /translation="MKRYLRWIVAAEFLFAAGNLHAVEVEVPGLLTDHTVSSI"
BASE COUNT          690 a          522 c          481 g          715 t
ORIGIN      
        1 gaacaaatgg tagtgtccgc tattgccagt acacctcata cacatcccct tgctgggtcg
       61 tattaaaggt tatctgactg gaaagtgccg caaggagtaa taacgcattc atattcttct
      121 cccgaaaaaa aacagggctt gcgccctgtt tctgtaatac aaatgatgta ttagtactga
      181 tgagcggtcg cgttgttacc aaagccaacc tgagtcacgt tgacggagga gttagatgca
      241 gtctggtcaa ctgcagcacc gttgccacca ccgaactgtt taaccgtcat ttcagaattt
      301 ttgccgttcc actgatcaag agtagcgcta ttaccgaagc cacgttgggt cagatcgatt
      361 gagctgtcat ctgagccctg accaacatct gcaccattac cgccgccatg ctgggtaata
      421 gtcaagtcag agttacgggc atcagtttgc agagcaagtg cagagttacc gccaccgtac
      481 tggtaaatgt tcagctcaga atttgggccg ctattattac cgccaccacc gtggttaccg
      541 ccgccgccgt actgaggaac aacacctgcc agagcgctac cggagaatac gattgctgca
      601 attgctgcta cttttaaaag tttcatgtaa aacccccatc ggattgattt aaaagtcgaa
      661 tggaaattaa cgttgtgtca cgcgaatagc catttgcgac tgtctctgca ctacaattgc
      721 cgttttttga gtaccatact gtgtaatatt tgctttatta ccagaacctt tctggataat
      781 catcgcagta ttaccataag caccttgcga aatactggca tcgttggcac tgcccgcctg
      841 atcaatatat gcaaggttat tagactggcc ccctgaatct ccagacaacc agtatcactt
      901 aaataagtga tactggttgt ctggagattc agggggccag tctacgcaac ctgtattttg
      961 ttaacgctgc gttatgatgg aaagtatgtc tgcggaaata tttttaataa ctcacccgcg
     1021 cgttgtattt ttcttttttt gttcatacca aagtattaaa acccacgtaa atacgctgtt
     1081 atctacgcaa aaaatatttt gttttctttt aaatctccgt tttccgctat caaaaatcac
     1141 cagacagtca tttttcttgc ccgtcgctga ttgctgcgat atgtcttgcg cacaagccgt
     1201 gacaaacctc gtctttttgg agtaaaaatt tgtccacgga ggtgcggaga aaaaacaaga
     1261 acgttttaca tgacgaaagg actacaccaa aatatttttt atatgtatta ttagtaagtt
     1321 atcaccattt gtatgatttt ttaaaattgt gcaataaaaa ccaaatgtac aacttttcta
     1381 tcatttctaa acttaataaa accttaaggt taatatttta atataacaag ttacatttag
     1441 ttacatgttt aacacttgat ttaagttttg taatggctag attgaaatca gatgtaatcc
     1501 attagtttta tattttaccc atttagggct gatttattac tacacacagc agtgcaacat
     1561 ctgtcagtac ttctggtgct tctattttag aggcagctgt caggtgtgcg atcaataaaa
     1621 aaagcggggt ttcatcatgt ttaatgaagt ccatagtatt catggtcata cattattgtt
     1681 gatcactaaa ccttctttgc aggcgacagc tctcttgcag caccttaaac aatcgctggc
     1741 aattacagga aaattacata atattcaacg ttctctggac gatatctctt caggctctat
     1801 tattcttctg gatatgatgg aagcagataa aaagcttatc cattattggc aggatacttt
     1861 gagcaggaaa aacaacaata tcaaaatatt gttgctaaat acgcctgaag attacccgta
     1921 ccgcgacatt gaaaactggc ctcatatcaa cggcgttttt tattccatgg aggatcaaga
     1981 acgtgttgtc aatgggttgc aaggcgtcct gcgcggcgaa tgctacttta cgcaaaagct
     2041 tgccagctac ttgattacgc attcaggtaa ctatcgttat aacagcacgg aatcagccct
     2101 ccttactcat cgggaaaaag agatcctgaa taagctgcgt atcggcgcgt ctaataacga
     2161 gatcgctcgt tcgttgttca tcagcgaaaa tacggttaaa acgcatcttt ataatctttt
     2221 caagaagata gccgtaaaaa accggacaca agcggtttcc tgggcaaacg ataacctcag
     2281 gcgataaagc catgaaacgt tatttacgct ggattgtggc ggcagaattt ctgttcgccg
     2341 cagggaatct tcacgccgtt gaggtagaag tcccgggatt gctaactgac catactgttt
     2401 catctatt
//
LOCUS       DADMJB010000284         2399 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.289, whole genome shotgun sequence.
ACCESSION   DADMJB010000284 DADMJB010000000
VERSION     DADMJB010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2399
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.289"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            1..488
                     /locus_tag="JN078_004138"
                     /pseudo
     CDS             1..488
                     /locus_tag="JN078_004138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013747467.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
     gene            675..839
                     /locus_tag="JN078_004139"
                     /pseudo
     CDS             675..839
                     /locus_tag="JN078_004139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001436458.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            1333..1911
                     /locus_tag="JN078_004140"
     CDS             1333..1911
                     /locus_tag="JN078_004140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043118.1"
                     /translation="MKVSFKSLGYIFHDIYNKKHTIDEFNDVVRKAVLSGKINELNAC
                     HKVAIFLAEKDNEITKKDKAKIIDTLTENYSIEFQQLMNISERTLNSSLYITPGESGF
                     VSFVNREGKICHTAYVKSSDNSMAYYHANYSSIDKYITDMCGLICMRHIESTCIIFYM
                     LDEKVLSAIAEFMNEKGWRAAFCSAKNLYKCV"
     gene            complement(2020..2278)
                     /locus_tag="JN078_004141"
                     /pseudo
     CDS             complement(2020..2278)
                     /locus_tag="JN078_004141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611146.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            2262..2399
                     /locus_tag="JN078_004142"
                     /pseudo
     CDS             2262..2399
                     /locus_tag="JN078_004142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343765.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          739 a          428 c          608 g          624 t
ORIGIN      
        1 cgcctttctg atgcttcccc gttttgccga tatttttcag cagggaaacc gatggcttaa
       61 ctggctggag aagcagccgg tgcagatgag ccgcctggaa cattatgccg gtcaggatga
      121 aattggcctg cgttacaaca gccaccggac aaaacgagaa gaaaaccttg tgatgagtgg
      181 cgacgagttt atggaaaggt tctcctggca tgtggcggat aaggggttcc ggatggtgat
      241 acggggtcct gagtccggtg aagcggcgat tactggaaga tgtggtgtac gccataacgg
      301 agacagtgag aaaaacggcg aggcaaatca caaggagagg gatgtatcag cagtgactga
      361 aggttgaccc gctgaagtgc gagctgtgcg gaggtcagat gcggtttacg gggctgaaga
      421 ggggttaccg tctggcagag caggttatga tgcatgagcc gctggctcga atacggtggt
      481 gcggctgaga gtcgcagagg ggaagttgcg tccatgttga ggggaacgga gcaaaaaacc
      541 atcagagata cattgaatca atcaatgtaa gcaatattaa gtgtctatac cgattacttg
      601 atgatcaggt tgtgttgaat aaacgcgcat tcttcggtgc ttttttaatc ttttggggat
      661 ttaaattcct atcgatgaac tgtcgatatg aaaaagcgag catcatactg acgtcaaaca
      721 aaggggtcgc agactgggga gaaatgttcg gagatcacgt gctggcaaca gcgatcctag
      781 atcggctgct acacgctgaa tatcaaagga gagagttacc ggttaaaaga gaaacgtaaa
      841 gctggagtgc tgaccaaaaa cacaacgcca atcagtgatg atgaaatggt ggaaaacgga
      901 cagcatcagt aacgaaagta tcttagcagg catgaaaatc gtccgcatcc cctaaacggt
      961 caaaatgctt ctgccgtgaa ggagggagaa tgccatctca tcacttatat ctggcgaatg
     1021 aaacacagat ggtcggcctt gcccccaaac acacggcggt gcaaaatgga atggcagaaa
     1081 acttcgtcaa aacgatgaaa tatgattaaa tcagtgttat gttcgaacct gacgtgttaa
     1141 cagcagtaaa gtagtctcgc gaaggtgttc aaacattata atgaatggca tcctcatagt
     1201 gcgcagggtt atcgcttgct gcggaaatat ctgaagcgac gtaccagtaa tggggaaaat
     1261 gatagctggt ttctgaaaat atagaggaaa atgtgatata tatatcctgt taatatttaa
     1321 ggagaatata aaatgaaagt ctcgtttaag tctttaggct atatttttca tgatatatat
     1381 aataaaaaac acactatcga tgagttcaac gatgtggtaa gaaaagcagt tttatcaggt
     1441 aaaattaacg agctgaatgc atgtcataaa gtggcaattt ttcttgccga aaaagacaat
     1501 gagataacaa agaaagacaa agccaagata atagatacat taactgaaaa ctattccatt
     1561 gaatttcaac aattaatgaa tattagtgag cgcacgttaa attcatcttt atatattact
     1621 cctggtgaaa gtggttttgt cagttttgtt aatcgtgaag gaaaaatatg tcatactgca
     1681 tatgtaaaat catcagataa tagcatggca tattaccatg caaattatag cagcattgac
     1741 aaatatatta cggatatgtg cggccttatt tgtatgaggc atattgagtc tacttgcatt
     1801 attttttata tgcttgatga aaaagtttta tctgccattg ctgaatttat gaatgaaaaa
     1861 ggatggcggg ctgcgttttg ttcagcaaag aacttatata aatgtgttta attttagaaa
     1921 aactatttgg taaaatccaa caagagtcga gaggttcgcg ttgcttcagc agggcctcag
     1981 cctgttcaac cagactcagt tgcaggtcgt gacgcagatt tagtggtggt ggttgattgt
     2041 cagataccag ccgatgatct tatagtgcat atcatcagac tttgagaagc atatggtttt
     2101 gcgggtaagc cgcttaagat gtgtccgcag gttcagatta tgtcgctcta tccgctgagt
     2161 gcatttcttg cttataacat gactggttga ggacaataaa gttcggtata ccggctcagg
     2221 catcggtcat gtagaaggca atgctaaact ggctcagcaa actaagagca gcgcgcatcc
     2281 acttacccaa tgcggttgag aaaatagcct tcgatcgctt tcatgtggcg aaacaaccgg
     2341 gtgaggtggt ggataaaacc cgccagaatg aacatccgca tcttcctgtt gaaagtcgt
//
LOCUS       DADMJB010000285         2348 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.290, whole genome shotgun sequence.
ACCESSION   DADMJB010000285 DADMJB010000000
VERSION     DADMJB010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2348)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2348)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2348
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.290"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..706)
                     /gene="folP"
                     /locus_tag="JN078_004143"
     CDS             complement(<1..706)
                     /gene="folP"
                     /locus_tag="JN078_004143"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019727244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HAY9043119.1"
                     /translation="MVTVFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDV
                     GPAASHPDARPVSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQRYALKRGVGYLND
                     IQGFPDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSAL
                     RRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKSALGLPLLVSVSRKSFLGAT
                     VGLPVKDLGPASLAAEL"
     gene            complement(700..1047)
                     /locus_tag="JN078_004144"
     CDS             complement(700..1047)
                     /locus_tag="JN078_004144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000679427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound efflux SMR
                     transporter QacE delta 1"
                     /protein_id="HAY9043120.1"
                     /translation="MKGWLFLVIAIVGEVIATSALKSSEGFTKLAPSAVVIIGYGIAF
                     YFLSLVLKSIPVGVAYAVWSGLGVVIITAIAWLLHGQKLDAWGFVGMGLIIAAFLLAR
                     SPSWKSLRRPTPW"
     gene            complement(1277..1750)
                     /locus_tag="JN078_004145"
     CDS             complement(1277..1750)
                     /locus_tag="JN078_004145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001389366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethoprim-resistant dihydrofolate reductase
                     DfrA7"
                     /protein_id="HAY9043121.1"
                     /translation="MKISLISATSENGVIGNGPDIPWSAKGEQLLFKALTYNQWLLVG
                     RKTFDSMGVLPNRKYAVVSRKGISSSNENVLVFPSIEIALQELSKITDHLYVSGGGQI
                     YNSLIEKADIIHLSTVHVEVEGDINFPKIPENFNLVFEQFFLSNINYTYQIWKKG"
     gene            1908..>2348
                     /gene="intI1"
                     /locus_tag="JN078_004146"
     CDS             1908..>2348
                     /gene="intI1"
                     /locus_tag="JN078_004146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 integron integrase IntI1"
                     /protein_id="HAY9043122.1"
                     /translation="MKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAF
                     IRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQ
                     EIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRI"
BASE COUNT          593 a          613 c          597 g          545 t
ORIGIN      
        1 gaagttccgc cgcaaggctc gctggaccca gatcctttac aggaaggcca acggtggcgc
       61 ccaagaagga tttccgcgac accgagacca atagcggaag ccccaacgcc gacttcagct
      121 tttgaaggtt cgacagcacg tgcagcgatg tttccggtgc ggggctcaag aaaaatccca
      181 tccccggatc gaggatgagc cggtcggcag cgaccccgct ccgtcgcaag gcggaaaccc
      241 gcgcctcgaa gaaccgcaca atctcgtcga gcgcgtcttc gggtcgaagg tgaccggtgc
      301 gggtggcgat gccatcccgc tgcgctgagt gcataaccac cagcctgcag tccgcctcag
      361 caatatcggg atagagcgca gggtcaggaa atccttggat atcgttcagg tagcccacgc
      421 cgcgcttgag cgcatagcgc tgggtttccg gttggaagct gtcgattgaa acacggtgca
      481 tctgatcgga cagggcgtct aagagcggcg caatacgtct gatctcatcg gccggcgata
      541 caggcctcgc gtccggatgg ctggcggccg gtccgacatc cacgacgtct gatccgactc
      601 gcagcatttc gatcgccgcg gtgacagcgc cggcggggtc tagccgccgg ctctcatcga
      661 agaaggagtc ctcggtgaga ttcagaatgc cgaacaccgt caccatggcg tcggcctccg
      721 cagcgacttc cacgatgggg atcgggcgag caaaaaggca gcaattatga gccccatacc
      781 tacaaagccc cacgcatcaa gcttttgccc atgaagcaac caggcaatgg ctgtaattat
      841 gacgacgccg agtcccgacc agactgcata agcaacaccg acagggatgg atttcagaac
      901 cagagaaaga aaataaaatg cgatgccata accgattatg acaacggcgg aaggggcaag
      961 cttagtaaag ccctcgctag attttaatgc ggatgttgcg attacttcgc caactattgc
     1021 gataacaaga aaaagccagc ctttcatgat atatctccca atttgtgtag ggcttattat
     1081 gcacgcttaa aaataataaa agcagacttg acctgatagt ttggctgtga gcaattatgt
     1141 gcttagtgca tctaacgccg agttcagcgg cagtttttaa gttgtggttt tatggaatac
     1201 ttttgcgcag caaaaccata aaaccgcgac ttaaaaactg tccaaggagc gcagcgactg
     1261 gtgctggaac gacttgttag ccttttttcc aaatctgata tgtgtaattt atattagaca
     1321 aaaaaaactg ctcaaaaacc aaattgaaat tctctggaat tttaggaaaa ttgatatcac
     1381 cttcaacctc aacgtgaaca gtagacaaat gaattatatc tgctttttca ataagactat
     1441 tgtagatttg accgccacca gagacatata aatgatctgt aattttcgat agttcttgca
     1501 aagcgatttc tattgaagga aagactaata cattttcatt tgagcttgaa attcctttcc
     1561 tcgacactac tgcatatttt cgatttggaa gaacacccat agagtcaaat gttttccttc
     1621 caacaaggag ccactgatta tatgtgagcg ctttaaagag taactgctca ccttttgctg
     1681 accatgggat atcagggcca ttaccgatta cgccattttc tgacgttgca gaaatcaatg
     1741 aaattttcaa ttcaaccccc gtaatggcta actttgtttt agggcgactg ccctgctgcg
     1801 taacatcgtt gctgctccat aacatcaaac atcgacccac ggcgtaacgc gcttgctgct
     1861 tggatgcccg aggcatagac tgtacaaaaa aacagtcata acaagccatg aaaaccgcca
     1921 ctgcgccgtt accaccgctg cgttcggtca aggttctgga ccagttgcgt gagcgcatac
     1981 gctacttgca ttacagctta cgaaccgaac aggcttatgt ccactgggtt cgtgccttca
     2041 tccgtttcca cggtgtgcgt cacccggcaa ccttgggcag cagcgaagtc gaggcatttc
     2101 tgtcctggct ggcgaacgag cgcaaggttt cggtctccac gcatcgtcag gcattggcgg
     2161 ccttgctgtt cttctacggc aaggtgctgt gcacggatct gccctggctt caggagatcg
     2221 gaagacctcg gccgtcgcgg cgcttgccgg tggtgctgac cccggatgaa gtggttcgca
     2281 tcctcggttt tctggaaggc gagcatcgtt tgttcgccca gcttctgtat ggaacgggca
     2341 tgcggatc
//
LOCUS       DADMJB010000286         2298 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.291, whole genome shotgun sequence.
ACCESSION   DADMJB010000286 DADMJB010000000
VERSION     DADMJB010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2298
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.291"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..184
                     /locus_tag="JN078_004147"
     CDS             <1..184
                     /locus_tag="JN078_004147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001395480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HAY9043123.1"
                     /translation="IYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFM
                     ETVSPFPGGKHGLAKV"
     gene            complement(204..455)
                     /locus_tag="JN078_004148"
     CDS             complement(204..455)
                     /locus_tag="JN078_004148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001119656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043124.1"
                     /translation="MPGTTTAMSINFIGITARTMNSNGSHGKPQIPVDYQKLLSIEDI
                     TFCRNRWGNIGENALRRVAVGKKLSFFGSDRGGENAAII"
     gene            378..1067
                     /locus_tag="JN078_004149"
                     /pseudo
     CDS             378..1067
                     /locus_tag="JN078_004149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(1084..1263)
                     /locus_tag="JN078_004150"
                     /pseudo
     CDS             complement(1084..1263)
                     /locus_tag="JN078_004150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611684.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            1593..>2298
                     /gene="ipaH7.8"
                     /locus_tag="JN078_004151"
     CDS             1593..>2298
                     /gene="ipaH7.8"
                     /locus_tag="JN078_004151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase
                     IpaH7.8"
                     /protein_id="HAY9043125.1"
                     /translation="MFSVNNTHSSVSCSPSINSNSTSNEHYLRILTEWEKNSSPGEER
                     GIAFNRLSQCFQNQEAVLNLSDLNLTSLPELPKHISALIVENNKLTSLPKLPAFLKEL
                     NADNNRLSVIPELPESLTTLSVRSNQLENLPVLPNHLTSLFVENNRLYNLPALPEKLK
                     FLHVYYNRLTTLPDLPDKLEILCAQRNNLVTFPQFSDRNNIRQKEYYFHFNQITTLPE
                     SFSQLDSSYRINISGNP"
BASE COUNT          681 a          516 c          432 g          669 t
ORIGIN      
        1 catttatcag ccggtttact cgccatgggt gaatcatgtt gaacggctat ggcaggcact
       61 tcacgacaca ataacgcgta atcatcagtg ccgctcaatg tggcaactgt tgaaaaaagt
      121 tcgccatttt atggaaaccg tcagcccatt ccccggaggc aaacatgggc tggcaaaagt
      181 gtagcggtat taagcgcagc tatttagatt attgccgcat tttctccacc acgatcagag
      241 ccgaaaaaag ataatttttt tccaactgcc acccggcgta atgcgttttc accaatgtta
      301 ccccacctat tgcggcaaaa ggtaatgtct tcaatcgata gaagtttctg gtaatctact
      361 ggtatttgag gttttccatg actaccgtta ctgttcattg tccgcgctgt aattccgatg
      421 aagtttatcg acatggccgt agttgttccc ggcatgagcg tttccgttgt cgctcatgta
      481 aacgtgtttt ccagctcact tactcttatg aagccagaaa actcggcgtt aaggagcaga
      541 tcgttgaaat ggcacataac ggcgcagggg gctgttatac cgccagaaca ctgaaaatcg
      601 gcatcaatac cgtcatacgg acattaaaaa gctctcgccc cggcggataa catctgcgcc
      661 agtcgctcac gctgatgttg cccttatctg tgaacttgat gagcagtggc gcttcgttgg
      721 cagcaaggcg caacaacact ggccctggta tgcgtacaac actaaaactg gggtgtgttg
      781 gcttacactt gcgggccacg gaatgatgag acctgtcggg aactgttagc cctgttgact
      841 ccgttctgta tcggcatggt gaccagcgat gactggggca gctacgccag agaagtgccg
      901 gaggagaaac acctgaccgg caaaatcttc acgcaacgta tgaacgtaac aacctgaccc
      961 tccgcccccg catcaagcgg ctggcacgta aaacaatctg cttctcgcgt tccgtggaaa
     1021 tccacgaaaa agtcatcggt tccttcattg aaaagcacat attctaatga ttggaagtac
     1081 tacccggcaa aactcattca gtgcattcca gtgattcagg atatagttga acgcctttac
     1141 catttcagca tggtttgaca aagttttcct ctggagcttt atccagtcat acaaggactt
     1201 cattcgcggc acacatttct cctgccttac cgcaagccgt ttttctgccg gcctccctcg
     1261 tattaaatgt gtatcgtttt tttacagtaa ttttaattta tcattctata ataggaataa
     1321 atgagcttgg ctaaaatatg atataaaaca aatatactta ctcggattac atttccttgc
     1381 tcactggaat gttgaattca gtgttattat tgactgcagt cacaataaaa aaaagaattc
     1441 catagaaaac ctcaacaaat aaattacaac taacttctgt tatgtgtaaa atggaaacta
     1501 ttaaaactta atatcgaaaa tggtaagtga aatttgtata aatatacaat tttaaatatt
     1561 tattctcaca aatataaggt tgccctagca ttatgttctc tgtaaataat acacactcat
     1621 cagtttcttg ctccccctct attaactcaa actcaaccag taatgaacat tatctgagaa
     1681 tcctgactga atgggaaaag aactcttctc ccggggaaga gcgaggcatt gcttttaaca
     1741 gactctccca gtgctttcag aatcaagaag cagtattaaa tttatcagac ctaaatttga
     1801 cgtctcttcc cgaattacca aagcatattt ctgctttgat tgtagaaaat aataaattaa
     1861 catcattgcc aaagctgcct gcatttctca aagaacttaa tgctgataat aacaggcttt
     1921 ctgtgatacc agaacttcct gagtcattaa caactttaag tgttcgttct aatcaactgg
     1981 aaaaccttcc tgttttgcca aaccatttaa catcattatt tgttgaaaat aacaggctat
     2041 ataatttacc ggctcttccc gaaaaattga aatttttaca tgtttattat aacaggctga
     2101 caacattacc cgacttaccg gataaactgg aaattctctg tgctcagcgc aataatctgg
     2161 ttacttttcc tcaattttct gatagaaaca atatcagaca aaaggaatat tattttcatt
     2221 ttaatcagat aaccactctt ccggagagtt tttcacaatt agattcaagt tacaggatta
     2281 atatttcagg gaatccat
//
LOCUS       DADMJB010000287         2276 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.292, whole genome shotgun sequence.
ACCESSION   DADMJB010000287 DADMJB010000000
VERSION     DADMJB010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2276)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2276)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2276
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.292"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..350)
                     /locus_tag="JN078_004152"
     CDS             complement(<1..350)
                     /locus_tag="JN078_004152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inhibitor of g-type lysozyme"
                     /protein_id="HAY9043126.1"
                     /translation="MKIKSISKAVLLFALLTSTSFAAGKNVNVEFRKGHSSAQYSGEI
                     KGYDYDTYTFYAKKGQKVHVSISNEGADTYLFGPGIDDSVDLSRYSPELDSHGQYSLP
                     ASGKYELRVLQTRN"
     gene            592..885
                     /locus_tag="JN078_004153"
     CDS             592..885
                     /locus_tag="JN078_004153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309701.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043127.1"
                     /translation="MFCVIYRSSKRDQTYLYVEKKDDFSRVPEELMKGFGQPQLAMIL
                     PLDGRKKLVNADIEKVKLALTEQGYYLQLPPPPEDLLKQHLSVMGQKTDDTNK"
     gene            957..1616
                     /locus_tag="JN078_004154"
     CDS             957..1616
                     /locus_tag="JN078_004154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HAY9043128.1"
                     /translation="MYQHHNWQGALLDYPVSKVVCVGSNYAKHIKEMGSAVPEEPVLF
                     IKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDL
                     TLRDVQGKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLGLSVNGEQRQQG
                     TTADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHSLTTRV
                     L"
     gene            1693..2154
                     /locus_tag="JN078_004155"
     CDS             1693..2154
                     /locus_tag="JN078_004155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415699.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgN family cysteine cluster protein"
                     /protein_id="HAY9043129.1"
                     /translation="MAEHLMNDVPFWQSKTLDEMSDAEWESLCDGCGQCCLHKLMDED
                     TDEIYFTNVACRQLNIKTCQCRNYERRFEFEPDCIKLTRENLPTFEWLPMTCAYRLLA
                     EGKDLPVWHPLLTGSKAAMHGERISVRHIAVKESEVIDWQDHILNKPDWAQ"
BASE COUNT          592 a          491 c          587 g          606 t
ORIGIN      
        1 tcgtttcggg tttgcagcac tcgcagctca tatttgccag aagcagggag tgagtattgt
       61 ccgtgactat cgagttctgg ggaatatctg gataaatcaa cagaatcatc gattcctggc
      121 ccgaagaggt aagtatcagc gccttcatta gagatactca catgtacttt ctgacctttt
      181 ttggcataga aggtatatgt atcgtaatcg tatcccttta tttcgccgga gtactgagcg
      241 ctgctatggc cttttctgaa ctcaacattg acattcttac ccgcagcaaa gctcgtggag
      301 gttagcagtg caaacagcaa tacagcctta ctgatgctct tgattttcat tggtagtctc
      361 ctgttcagaa tgagtacgat gaactgttat aatataacaa tccctaacgg gagaattcca
      421 gtggcttttc tgcgttcggt aaaatcccgg cgcggcattt tttgccgggg ggattactta
      481 taaaggggca tggactcaac aaaccgcaga aatctacagc tggctggctt gtggcgcggg
      541 tttcattgat gttagcttat gccaaaacct ggcatcttaa agagtaaaag tatgttttgt
      601 gtgatttatc gaagcagcaa gcgtgaccag acctatttat atgtcgaaaa aaaagacgat
      661 ttttcgcgtg ttcctgagga actgatgaaa ggttttggtc agcctcagtt agcgatgatt
      721 ctgccgttgg atgggcggaa gaaactggtc aatgctgata ttgaaaaggt taaactggca
      781 ttaaccgagc aaggttacta tttgcagtta ccgccaccac ccgaagattt gctgaagcaa
      841 catctttccg tcatggggca gaaaacagac gacacgaaca aataaccgat atccggcggt
      901 ggcattatct ttgtcggcgc gggttttcat atccacgata aggtgagggg aacgttatgt
      961 atcaacatca caactggcaa ggtgcgctgc tggattatcc ggtgagtaaa gtagtctgtg
     1021 ttggcagtaa ctatgccaaa catattaaag agatgggcag cgcagtgccc gaagagccag
     1081 tgctgtttat taaaccagaa acggcactgt gcgatctgcg gcagccattg gcgatcccat
     1141 ccgatttcgg ttcagttcat catgaagtcg aactggcggt gttgattggt gcgacgctgc
     1201 gtcaggcaac ggaagagcat gtccgcaaag ccattgccgg ttacggcgtg gcgcttgatc
     1261 tgacattgcg tgatgttcag ggaaaaatga agaaagccgg gcagccgtgg gaaaaggcta
     1321 aagcgtttga taactcttgt ccgctttccg ggtttatccc cgcggcggaa tttaccggcg
     1381 atccacaaaa tacaacgctg ggcctgagcg taaacggcga acaacgccag caaggtacga
     1441 ctgcggacat gatccataaa atcgttccgt tgatcgctta tatgagcaag ttttttaccc
     1501 tcaaggccgg tgacgttgtg ttgacaggca cgcctgatgg cgtcggcccg ttgcaaagcg
     1561 gtgatgagct gacagtcact ttcgatgggc attctttgac aactcgcgtt ttgtaatact
     1621 ttttgccgcc tgaaagcggc ggcaaaactt gcatcgctgt gccagactgg ttataaggtg
     1681 cgttttaacg taatggcgga acacctgatg aacgatgtac ctttctggca aagtaaaacc
     1741 ctggacgaaa tgagcgatgc ggaatgggag tcgttgtgtg atggttgcgg tcagtgttgc
     1801 ctgcataaac tgatggatga agacaccgac gaaatctact tcactaacgt cgcctgtcgc
     1861 cagctcaata ttaaaacctg tcaatgtcgg aactacgaac gtcgtttcga gtttgaaccc
     1921 gactgcatta aattaacccg tgaaaatctg ccaacattcg aatggctgcc aatgacctgc
     1981 gcttatcgtt tgctggcgga aggtaaagat ttacctgtgt ggcatccgct acttactggt
     2041 tcgaaagcgg caatgcatgg tgaacgtatc tctgtgcgtc atatcgcagt gaaagaatca
     2101 gaagtgattg actggcagga tcatatctta aataaacctg actgggcgca gtgataaatt
     2161 taatagatgt tgatgggggc tttcttaata tacgtctgga tgctcgccat ttcgtagccc
     2221 tgtttttgaa agcgctctgt cataatgaga gttacccgat accttattat caacag
//
LOCUS       DADMJB010000288         2260 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.293, whole genome shotgun sequence.
ACCESSION   DADMJB010000288 DADMJB010000000
VERSION     DADMJB010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2260
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.293"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            111..432
                     /locus_tag="JN078_004156"
                     /pseudo
     CDS             111..432
                     /locus_tag="JN078_004156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001232281.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(466..672)
                     /locus_tag="JN078_004157"
     CDS             complement(466..672)
                     /locus_tag="JN078_004157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001570270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043130.1"
                     /translation="MTVSYKITYEHRDGDQIRMEEVLFHSEHEPTKDEIHDAVRKDTV
                     RFNSPSNGVTAVSGFKVISVVPVP"
     gene            complement(1170..1243)
                     /locus_tag="JN078_004158"
     tRNA            complement(1170..1243)
                     /locus_tag="JN078_004158"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1209..1211),aa:Gly,seq:ccc)
     gene            complement(1322..2077)
                     /locus_tag="JN078_004159"
     CDS             complement(1322..2077)
                     /locus_tag="JN078_004159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311765.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HAY9043131.1"
                     /translation="MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTV
                     KRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQKLKLGGAKSSSSTRKSTAKSTT
                     KTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYA
                     AGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKTGQKIATMGST
                     DAASVRLHFQIRYRATAIDPLRYLPPQGSKPKC"
BASE COUNT          603 a          530 c          491 g          636 t
ORIGIN      
        1 tcatacacta aatcagtaag ttggcagcat taccaatttt gctaagttaa tgcattaatc
       61 taaaaacgct ttaaatcaat acataaccat tatctcttgg gattatttac atgcgcaaaa
      121 gtttaatgct gttacttgct tcaacattga ttatttctgg atgtgcaaca aaaaaacaac
      181 tcgttccaac tggtggaagc aaatcagacg gcacagttag gatgagttat tcttacggta
      241 tgtttgaaag tcctgttgta gatccacaac aaggcatgaa tgcagccaaa gcgcgttgtg
      301 ccgcttaggg gatattcagg agccgagcct tttggtggat tcacttctca atgttcacaa
      361 ccttcttcat ctggttgtat gcaaacactt gtgactatcg aatatcaatg cactggcgat
      421 attaagaagt aataattagg ggcttccagc cccttctata accattcatg gaacagggac
      481 aaccgaaatc actttaaacc ctgaaacagc cgttactcca ttagatggag aattaaatct
      541 cacagtatct tttcttactg catcatgaat ttcatctttt gttggttcat gctctgaatg
      601 gaataaaacc tcttccattc taatttgatc accgtctcta tgctcataag taatcttgta
      661 gctaacagtc atatcaacct catgcagggg aattgtgaga ttattataga caatagaaac
      721 cataaagccc cgttggtgat acagcaacaa gcgggagcgt agcgacttca tcagattgtc
      781 agaaagatca caccttatca ggataaccgt gtacccgttg ggagcgtggc tgaaacgctg
      841 atagagcttg catatggttt gcaaggacca atatcaccat aaacctgttt acgcagccac
      901 aaggccgcac atcgggctta aatgcgtgtg ttcagtctgt cgatgacatt acaatgccag
      961 gatgggcttt atcttcacgt tgtgctatcg cggtgtgaga ggtgcaactg ccgccaacgt
     1021 taggttatac tgtcatctca ccgtgtaact taacgtgaca gttactaagg gcggatcaca
     1081 atggtagaac tcctaagcaa attaaatagg taactgttta agttgctgac agagaagact
     1141 tttttagtct tctccacctg gggagattct ggagcgggcg aagggaatcg aaccctcgta
     1201 tagagcttgg gaagctctcg ttctaccatt gaactacgcc cgcttcgaga tgcgtaaggc
     1261 attataaacc ttacgctctc cttagcaagt gccgcgctgc tgactgctga ttaattcgcc
     1321 atcagcattt tggcttgctg ccctgcggcg gcaagtaacg tagcggatca attgccgttg
     1381 cacggtaacg aatctggaaa tgcaggcgaa cagatgccgc atccgtgctc cccatagtgg
     1441 cgattttttg cccagtcttc acgctttgcc cattatttac cagcatcgtg tcattatggg
     1501 cgtaagccgt aatgtaatct tcactgtgtt taatcatgat gagattaccg tagccacgca
     1561 gctggttgcc cacatacacc acctttcctg cacccgcggc gtaaataggt gtaccccgtg
     1621 gagctgagat atcaatccct ttattgccgc catctgctgt cgaatacggc atgataactt
     1681 tccctgtcgt tggccataac caacaacgtt gccctactgg cggccaggaa gatttcggta
     1741 ccgctgatga cggtgtaacc gatgcggttt tggtcgttga tttggcggtt gatttacgtg
     1801 tactactgct acttttcgcc ccacccagtt ttagtttctg accaacttca atggtgtaag
     1861 ggggggaaat gccgttcagt cgcgccagtt cttttacgct ggttcccgtg gtgcgcgaaa
     1921 tacgatatag cgtatccccc cgtttcacgg tgtaaacgga gccggaatat gttcctgtat
     1981 cggatgattt gctacccgaa cagcccgcca aaagcagtcc aaccgataac aacatcacga
     2041 tacccagaga ttttttattc aggcgtcccg cactcaaaat ctttcctcgc ttaaaaaaca
     2101 agacgcctta tcatagcagc cagcctcttg atacccaatc tcttgcttct ggaaaaacgt
     2161 ggtaatagag aaagaggtta atttcatttg gcaaagggaa gtatcatcag caaaatattc
     2221 gctgtagagg tatcgaactt cctgactttt taccctattt
//
LOCUS       DADMJB010000289         2259 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.294, whole genome shotgun sequence.
ACCESSION   DADMJB010000289 DADMJB010000000
VERSION     DADMJB010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2259
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.294"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            662..2170
                     /gene="ltrA"
                     /locus_tag="JN078_004160"
     CDS             662..2170
                     /gene="ltrA"
                     /locus_tag="JN078_004160"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HAY9043132.1"
                     /translation="MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAH
                     TPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALR
                     DRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEG
                     DLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVI
                     SPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCR
                     YADDFVLIVKGTKAQAEAIREECRGVLEGSLKLRLNMDKTKITHVNDGFIFLGHRIIR
                     KRSRYGEMRVISTIPQEKARNFAASLTALLSGNYSESKVDMAEQLNRKLKGWAMFYQF
                     VDFKAKVFSYIDRVVFWKLAHWLARKYRTGIASLMRWWCKSPKPGQSKTWVLFGKTNH
                     GKLSGEILYRLVGQGKKLFRWRLPEGNPYLRTETRNTYTSRFTEVAMAFASI"
BASE COUNT          578 a          558 c          663 g          460 t
ORIGIN      
        1 agttcagggc gggcatggat gcttaaatga accgcgagtc tgtctggaat attgaaccgg
       61 taactcacga tgagaaaccc aacaatccca ccgggtgtga cggtggagaa cctgagcggc
      121 agtgacctgc ggcatgcccg cagggtgatg taacccgctg acaacgggga ttgaggcgag
      181 atcactaagc cgagatgatc ctcaaggtta agtactgaaa ggctgaagaa catgaacccg
      241 ttaatccgcc tctgtgggtt gaaaacgtca ccacggccta cgtgatctga caggccgtgc
      301 aggaggaact ggcagtgata cgtaagcact gccggtcgaa ggtgttttga catgtatgcg
      361 aaacaccggg gcagcagcgt ctatcacgct tgcgttgctg acttctgcca acttgcggca
      421 agcaaggata aagagtgcga cgggcagcct cctcagtatg cctgagtcca ggcaggtaaa
      481 ccggggaagg tcagcgacgg atgttaaggg ggcatggctc cgatgacgcg ctggctggcg
      541 gagcttccgt agtagtccgc gatggggaaa gcccattaca tggcgaaggg aagcagtttg
      601 aatgtgtttg cgacgtgaat taactgacct aacgaggtga agacctttga taatcagcga
      661 aatgcaacgc aagcttgcca catgggcagc caccgatccg tccctacgga ttcaacggct
      721 gctgcgtcta ataacacaac cagaatggct ggctgaagcg gcgcggatca cgctttcatc
      781 aaagggggcc catacccccg gcgttgatgg cgtgaacaaa acaatgctac aggccagact
      841 ggctgttgag ctgcaaatcc tcagggatga attactctca ggccactacc agcccttgcc
      901 cgcaagacgg gtttacatcc ctaaaagcaa cggcaaactg cgaccactgg gtatccccgc
      961 gttgcgggat cgtattgttc agcgggccat gctgatggcg atggagccga tatgggagag
     1021 tgattttcat acgctctcat atggcttccg gcctgagcgc agtgtccacc acgcgatccg
     1081 cacggtgaaa ttacagctca cagactgcgg tgaaacccgg ggacgctggg tgattgaagg
     1141 cgacctgtcc agttacttcg acaccgtaca tcatcgactg ctgatgaagg ctgtacgccg
     1201 caggatcagt gacgcacgtt tcatgactct gctgtggaaa accatcaagg cgggacatat
     1261 cgatgtcggt ctctttcggg cggccagtga aggtgtgcca cagggcggtg ttatatcgcc
     1321 gctattatcg aacatcatgc tgaatgagtt cgatcaatac ctgcatgagc gctacctgag
     1381 cgggaaagcc agaaaagatc ggtggtactg gaataacagt atccaacggg gccgaagtac
     1441 ggcggtcaga gaaaactggc agtggaaacc cgcggtggcg tactgccgct atgccgatga
     1501 ttttgtcctc atcgtcaaag gcaccaaagc acaggcggaa gccatcaggg aggagtgtcg
     1561 gggtgtgctc gaaggcagtc tgaaactcag gctgaacatg gataagacta aaatcaccca
     1621 tgttaatgac ggctttatct ttctggggca caggatcatt cgcaaacgca gtcgttatgg
     1681 cgagatgcga gtgatctcaa cgatcccgca ggagaaagcc agaaacttcg ccgcatcgct
     1741 gacagcactg ttatcaggca actacagtga aagcaaagtc gatatggctg aacaactcaa
     1801 ccgaaaactg aaaggctggg ccatgttcta tcagttcgtt gattttaagg ccaaagtctt
     1861 cagttatatc gaccgtgtcg tgttctggaa gctggctcac tggctggccc gcaaataccg
     1921 tacaggtatc gcttccctga tgaggtggtg gtgtaaatca ccgaaaccgg gtcagagcaa
     1981 aacgtgggtt ttatttggta aaaccaatca cggcaagctc agcggcgaaa tactgtaccg
     2041 gttggtgggg caaggcaaga agctgttccg ctggcggcta cccgaaggta atccctatct
     2101 gaggacggag accagaaaca cgtatacatc gcgctttaca gaagtggcaa tggcgttcgc
     2161 cagcatttaa atggagagcc ggatgcgctg aaaggtgcac gtccggttcg gggaggagag
     2221 gcagggaaat agtccgacta cgccctgcct cttactcta
//
LOCUS       DADMJB010000290         2207 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.295, whole genome shotgun sequence.
ACCESSION   DADMJB010000290 DADMJB010000000
VERSION     DADMJB010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.295"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(117..1571)
                     /gene="ospC2"
                     /locus_tag="JN078_004161"
     CDS             complement(117..1571)
                     /gene="ospC2"
                     /locus_tag="JN078_004161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspC2"
                     /protein_id="HAY9043133.1"
                     /translation="MKIPEAVNHINVQNNIDLVDGKINPNKDTKALQKNISCVTNSSS
                     SGISEKHLDHCADTVKSFLRKSIAAQSYSKMFSQGTSFKSLNLSIEAPSGARSSFRSL
                     EHLDKVSRHYLSEIIQKTHPLSSDERHLLSIIINSDFNFRHQSNANLSNNTLNIKSFD
                     KIKSENIQTYKNTFSEDIEEIANHDFVFFGVEISNHQETLPLNKTHHTVDFGANAYII
                     DHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFLDNFKEVVDEVSRYVHGNQGKTDVPIF
                     NTKDMRLGIGLHLIDFIRKSKDQRFREFCYNKNIDPVSLDRIINFVFQLEYHIPRMLS
                     TDNFKKIRLRDISLEDAIKASNYEEINNKVTDKKMAHQALAYSLGNAKSDMALYLLSK
                     FNFTKQDIAEMEKMNNNMYCELYDVEYLLSEDSANYKVLEYFINNGLVDVNKRFQKAN
                     SGDTMLDNAMKSKDSKTIDFLLRNGAVSGKRFGR"
     gene            1996..>2207
                     /locus_tag="JN078_004162"
     CDS             1996..>2207
                     /locus_tag="JN078_004162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY9043134.1"
                     /translation="MARYDLPDEAWTIIKPLLPPEPTTPRAGRPWAEHRKIINGMFWV
                     LCSGAPWRDLPERYGAWKTVYNRFNR"
BASE COUNT          685 a          405 c          365 g          752 t
ORIGIN      
        1 cgttcaccac atgcaatgtg ttgttgcagg ggaacggtct gcaccatccc ctatatcgat
       61 caatataaca aaaatgacaa cgtcagattc agggcacaac ctaaatatat tttaggtcac
      121 ctcccaaatc gtttacctga taccgctcca tttcttaata aaaaatcaat tgtttttgaa
      181 tctttgcttt tcattgcatt gtcaagcata gtgtccccac tatttgcttt ttgaaatctt
      241 ttgtttacat caaccaatcc attattaata aaatattcta gcactttata gttggcacta
      301 tcttcactaa gtaaatactc aacatcatac agctcacaat acatattgtt gttcattttc
      361 tccatctctg cgatatcttg ttttgtaaaa ttaaatttag atagtaaata aagtgccata
      421 tcagattttg cattgcctag agaataagca agagcttgat gagccatttt tttatcagtc
      481 accttattgt taatttcttc ataattggat gctttaatgg catcctccaa agatatatct
      541 ctgagtctta tctttttgaa gttatctgtg cttagcattc ttggtatatg atactcaagc
      601 tgaaacacaa agtttataat tctatccaga ctaacaggat caatgttttt attataacaa
      661 aactctcgga atctttgatc tttactcttt cttataaaat caataagatg caacccaatt
      721 ccaagcctca tatctttagt attaaatatt ggcacatcag tttttccctg attaccatgc
      781 acatacctgc taacttcatc cacaacctct ttaaagttat ctaagaaaaa tgattggtgc
      841 tcatggtaaa aaacaggtgg aatagcatta tcaaagtggt cggttaatgt catatatcca
      901 tatggagagt catgatcaat gatatacgca ttagcaccaa aatccacagt atgatgtgtt
      961 ttatttagtg ggagtgtttc ttgatgattg gaaatttcaa ccccaaaaaa aacaaaatcg
     1021 tggttagcta tttcttcaat atcctcagag aatgtgtttt tatatgtttg tatattctca
     1081 gacttaattt tatcaaagga cttaatatta agagtattat ttgacaggtt agcgttactt
     1141 tgatgtctga agttaaaatc agaattaata ataatagaga gcaagtgacg ttcatccgaa
     1201 gaaagaggat gagttttttg tattatttca gaaagatagt gtctggacac cttatcgagg
     1261 tgctcaagtg accgaaatga tgaccgtgct ccagatggcg cttcaataga aagatttaat
     1321 gatttgaaac tggtcccttg agagaacatt ttactataac tttgcgctgc tatagacttc
     1381 cttaaaaagc ttttcacagt atcagcacag tgatctaaat gtttttcact tatgccagaa
     1441 gaggatgagt ttgttacgca tgatatgttt ttttgtaatg cttttgtatc tttgttcgga
     1501 tttatttttc catcaacaag atcaatattg ttctgaacat taatatgatt tactgcttca
     1561 ggtattttca taaaacatcc cccattatgt gcgtttttat ctgcagttat ttagaataat
     1621 attatctaac ttaatatttt cttgtatgta ttataacgaa catattttaa tatgttgtac
     1681 gattttcact ctgaaatccc ctgagtttaa tcacacttcc tttactgaaa ggaattattg
     1741 caacagtatt atttgttttt ggatatatat cttgcgcctt gttatgtagt taatgctcag
     1801 aatatgatag ataaaataga gacgcagaac agggcatgct cataacatga tgataacata
     1861 aaaaattagt aacaataaat gaaagaatca tgggcgctca acaaaaagag agctaaatag
     1921 ctgcgcggaa tagtaggctg tgtcccttaa tcatctgagt tatagtaact gtctgtttac
     1981 acaacatatt gaactatggc tcgctacgac cttcccgatg aggcatggac catcatcaag
     2041 cccctgttac ctcctgaacc caccacacca cgggccggac gcccatgggc tgagcaccgt
     2101 aaaatcatca atggcatgtt ctgggtgtta tgttccggtg caccatggcg cgatttaccc
     2161 gaacgatatg gggcatggaa aactgtttat aaccgcttta accgatg
//
LOCUS       DADMJB010000291         2207 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.296, whole genome shotgun sequence.
ACCESSION   DADMJB010000291 DADMJB010000000
VERSION     DADMJB010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.296"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            297..1949
                     /locus_tag="JN078_004163"
     CDS             297..1949
                     /locus_tag="JN078_004163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858318.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="HAY9043135.1"
                     /translation="MIPLKKNITLIMFTLSLLTGNPAIAYETDKVYKITVLHTNDHHG
                     HFWRNNHGEYGLSSQKTLVDNIRQKVINNGGSVLLLSGGDINTGVPESDLQKAEPDIR
                     GMNLIGYDAMAVGNHEFDNPLNILRQQEKWATFPFLSANIYQKSTGRRLFSPWKIFTR
                     QNLKIAVIGLTTDDTAKTGNSEYFTDIEFRQPAAEARSVIDELNQQEKPDIIIAATHM
                     GHYDNGESGSNAPGDVEMARSLPTGSLAMIVGGHSQAPVCMASDNKKQWNYIPGTTCV
                     PDKQNGIWIVQAHEWGKYVGQADFEFCNGTMKLVNYQLHPVNLKMRITREDGKTEFSF
                     YTPEITEDPQMLSLLTPFQNKGKAQLDVKVGVVNGRLEGDRSKVRFVQTSMGHLILSA
                     LTERIDADFAVVSGGEIRDSIESGNITYKDILKVQPFGNTVVSIDLTGKEVADYLATV
                     AQMKPDSGAYPQFLNTSFVVKKGKIEMLKIKGKSVDLNKKYRMTTFSFNATGGDGYPR
                     IDNRPGYINTGFIDAEVLIEYIREHSPLDAASYEPKGEVSWQ"
     gene            complement(1936..2136)
                     /locus_tag="JN078_004164"
     CDS             complement(1936..2136)
                     /locus_tag="JN078_004164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY9043136.1"
                     /translation="MTKKLAALQHQLSRKVKFSNNRQKQKHKIQQLHSHIANIRRDYF
                     HKVTATVSKKHVMIVNYVITAN"
BASE COUNT          685 a          405 c          515 g          602 t
ORIGIN      
        1 tcagtatcag accatattaa ttgctgaaac tgataaacat caaaccttat agaagggtga
       61 atgctgaaag ggggctatgg tgatcgacgt gatgacaacg acaggtaaga ccgtgacctg
      121 ataaacctga attgtgtcct agacataaag tcggtgaagg gaataaggct caggtcagcg
      181 aatcttatag tggcccgcag ctctgactgc aataaggccg gatacagagc agcaactact
      241 cgtcgatgtc agaacaacgg aagccttgca aacggggatg cgttcataca ggtacaatga
      301 taccgttaaa aaaaaacatt acgctaataa tgttcaccct gtcattactg acaggaaatc
      361 ctgctatagc gtatgaaaca gataaagtat ataaaataac cgttctgcat acaaatgacc
      421 accatggaca cttttggcgt aacaatcatg gtgagtacgg gttatcctcc caaaaaactc
      481 tggtggacaa tatccggcag aaagtaataa ataatggcgg aagtgttcta ttattatctg
      541 gtggtgatat taacaccggt gtacctgaat cagaccttca gaaggctgaa cccgatattc
      601 gtggaatgaa tctaattggt tatgatgcaa tggccgtcgg taatcatgaa tttgataatc
      661 ctctaaatat attacgtcag caggaaaaat gggccacatt tcctttcctt tctgctaaca
      721 tatatcaaaa aagtacaggg aggcgtttat tcagtccatg gaaaattttc acccgtcaga
      781 atttgaaaat tgcagtcatt ggcttgacga cagatgatac tgcgaaaaca ggaaattctg
      841 aatattttac tgatattgag ttccgtcaac ctgctgctga ggcgaggagt gtcattgatg
      901 aacttaatca gcaggaaaag ccagatatta ttattgcggc aacacatatg gggcactatg
      961 acaatggcga gtcaggttcg aatgctcctg gtgatgttga aatggctcgc agtttgccga
     1021 ctggctcatt agcaatgatt gtgggaggac attcacaagc tcctgtctgc atggccagcg
     1081 ataataaaaa acagtggaat tatattccgg ggacaacctg tgtaccagat aaacaaaatg
     1141 gcatctggat tgtacaagcg catgagtggg gaaaatatgt cggtcaggct gattttgaat
     1201 tctgtaacgg tacaatgaaa ctggttaatt atcagttaca cccagttaat ctcaaaatga
     1261 gaattaccag agaagatgga aaaacggaat tttcttttta cacccccgaa attactgaag
     1321 atccacagat gttatcctta ctgacaccat tccagaataa aggcaaagca caactggatg
     1381 tgaaggttgg ggttgtgaac ggacgtctgg aaggggacag aagtaaagtt cgttttgttc
     1441 agaccagtat gggccatctg attctgagcg ctctgacaga acgtattgac gcagattttg
     1501 ctgttgtgag tggtggggaa attcgagatt ccatagagag tggtaacatc acatacaaag
     1561 atatactgaa agttcagcca tttggtaata cggtagtaag tattgatttg acggggaaag
     1621 aagtagctga ctacctagct acagtggcac agatgaaacc ggattccgga gcctacccac
     1681 aatttttgaa taccagcttt gtagtcaaaa aaggaaaaat cgaaatgcta aaaataaaag
     1741 gtaaatcggt tgaccttaac aaaaaatatc gtatgacaac atttagcttt aatgctactg
     1801 gtggggatgg ctatccacgt attgataata gacccggata cataaatacc ggatttattg
     1861 atgctgaagt acttatcgaa tatatccggg aacattcacc gctggatgct gcttcatatg
     1921 aaccaaaagg tgaagtcagt tggcagtgat aacgtaattg acgatcatca cgtgtttttt
     1981 gctgacagtc gctgtgactt tgtgaaagta gtctctgcgg atgtttgcga tatgggaatg
     2041 cagttgctgt attttgtgtt tctgcttctg cctgttgttg ctgaatttaa ccttgcggct
     2101 taactgatgt tggagcgctg ccagcttctt cgtcaatttc gctgattaaa gtttattcat
     2161 tatggcatga tctgcgtaag cggctcgtca gaaccgtatt gatattt
//
LOCUS       DADMJB010000292         2180 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.297, whole genome shotgun sequence.
ACCESSION   DADMJB010000292 DADMJB010000000
VERSION     DADMJB010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2180)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2180)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2180
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.297"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..709)
                     /gene="ipaH9.8"
                     /locus_tag="JN078_004165"
     CDS             complement(<1..709)
                     /gene="ipaH9.8"
                     /locus_tag="JN078_004165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858359.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase
                     IpaH9.8"
                     /protein_id="HAY9043137.1"
                     /translation="MLPINNNFSLPQNSFYNTISGTYADYFSAWDKWEKQALPGEERD
                     EAVSRLKECLINNSDELRLDRLNLSSLPDNLPAQITLLNVSYNQLTNLPELPVTLKKL
                     YSASNKLSELPVLPPALESLQVQHNELENLPALPDSLLTMNISYNEIVSLPSLPQALK
                     NLRATRNFLTELPAFSEGNNPVVREYFFDRNQISHIPESILNLRNECSIHISDNPLSS
                     HALQALQRLTSSPDYHGP"
     gene            complement(971..1066)
                     /locus_tag="JN078_004166"
                     /pseudo
     CDS             complement(971..1066)
                     /locus_tag="JN078_004166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(1102..1407)
                     /gene="ccdB"
                     /locus_tag="JN078_004167"
     CDS             complement(1102..1407)
                     /gene="ccdB"
                     /locus_tag="JN078_004167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858358.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system toxin CcdB"
                     /protein_id="HAY9043138.1"
                     /translation="MQFKVYAYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSD
                     KVSRELYPVVHVGDESWRMMTTDMASVPIFVIGEEVADLSHRENDIKNAINLMFWGI"
     gene            complement(1409..1627)
                     /gene="ccdA"
                     /locus_tag="JN078_004168"
     CDS             complement(1409..1627)
                     /gene="ccdA"
                     /locus_tag="JN078_004168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin CcdA"
                     /protein_id="HAY9043139.1"
                     /translation="MKQRITVTIDSDSYQLLKSANVNISGLVNTAMQKEARRLRAERW
                     QAENQQGMAEIARFIEMNGSFADENRDW"
BASE COUNT          574 a          459 c          516 g          631 t
ORIGIN      
        1 gtgggccgtg gtagtccggc gaagaggtta atctttgcag ggcttgcaga gcatgggatg
       61 ataatgggtt atcactaata tgtattgaac attcattcct cagattaaga atgctttccg
      121 ggatatgact tatctgattt ctatcaaaaa aatactctct gacaacggga ttatttccct
      181 cagaaaatgc tggtagctca gtgaggaaat tacgggtcgc tctgagattt ttaagagcct
      241 gtgggagcga tggtaaggag actatttcgt tatagctgat attcatagtc aataacgaat
      301 cgggtaaagc tggcaggttt tccagctcat tgtgttgtac ctgaagtgac tccagcgcag
      361 gaggtagcac gggcaattct gataatttat tgctggcgga atataatttt tttagcgtaa
      421 caggcagttc aggtaggtta gttaattgat tatatgatac attgagcagc gttatctgag
      481 ctggtaagtt gtcaggtagc gaggacagat ttaaacggtc cagtcgaagt tcatcggaat
      541 tattgataag acattcttta agtcgggaga cagcctcatc acgctcttca ccggggagcg
      601 cttgtttttc ccatttatcc catgctgaaa agtaatcagc atatgtaccg gaaatagtgt
      661 tataaaaaga attttggggc aatgaaaagt tattatttat cggtaacatg atgggcatcc
      721 agttaaagcc ggtggacaaa tggctttgtt aaaagaaata agcaggagtt tttatgaagt
      781 tcattccatg aaatgaactt cagcactttt ttattataat aaggataaac aaaattggct
      841 gtaaaaaaac gatactgttt cagttaaccg tgaatggcct gtttgcaccg tattgttctt
      901 gtttttcggt tagttaaaca tcgtacttca tatttgaacg gtaagcggct cgtcagaacc
      961 gtattgatat ttactgagag gtcagatcaa ctttccaggg caacagatcg cgtacccggt
     1021 ttgccggcca gtcttggata tgctcaatga cgtaacgcag ccattttgtc aacgccacga
     1081 tttttgaccc tagcctgaca tttatattcc ccagaacatc aggttaatgg cgtttttgat
     1141 gtcattttcg cggtggctga gatcagccac ttcttccccg ataacgaaga tcggcacact
     1201 ggccatatca gtggtcatca tgcgccagct ttcatccccg acatgcacca ccgggtaaag
     1261 ctcacgggag actttatctg acagcaggcg ggcactggcc agggggatca ccatccgtcg
     1321 tccgggcgtg tcaataatgt cactctgtac atccacaaac agacgataac gactctctct
     1381 tttataggcg taaaccttaa actgcatttc accagtccct gttctcatcg gcaaaagagc
     1441 cgttcatttc aataaaacgg gcgatctcag ccatcccctg ctgattttca gcctgccagc
     1501 gttccgcacg cagacggcgg gcctcttttt gcatggccgt atttaccagg cctgagatat
     1561 tcacgtttgc ggatttaagt aactgatagc tgtcactgtc tatagtgaca gtaatacgct
     1621 gcttcatgat aagccctcaa aaacatactt atgatatgta tatgagtata tattaatggt
     1681 acaaaccatc aatatccata aaaagtacac cattaattca ctataagttt ttaatacaat
     1741 tttttctgct gcgatttttt tatacgataa ttagcatact tataacaccg taagtaaatt
     1801 acatgaaagc aggcacagcg tgatccgatt tttctgcgta taacgatttt ccggaagtgt
     1861 aatacggttg cgccccgggc cgggcaccct tttctgttgt tgtgtacggg cccacagaga
     1921 atggtaccgg aggcgggctc agaagtactg agtcgggtga tcgcgtcagg ccgcgaagta
     1981 ctgacacggg tattggtgac tggtgatgaa gtactgcccc gggtatgatt tcaggctgat
     2041 tcaggttctg attctctgtc agtccgcgtg gttgctggcc tggctgattt cctgttgtca
     2101 ggcgttcaac aaccgactgc aggttatagc ccggttcacg aaccacggca gcctggcggc
     2161 tgcaaatcgg ggtgtggcag
//
LOCUS       DADMJB010000293         2179 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.298, whole genome shotgun sequence.
ACCESSION   DADMJB010000293 DADMJB010000000
VERSION     DADMJB010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2179)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2179)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2179
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.298"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            334..557
                     /locus_tag="JN078_004169"
                     /pseudo
     CDS             334..557
                     /locus_tag="JN078_004169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            666..934
                     /locus_tag="JN078_004170"
                     /pseudo
     CDS             666..934
                     /locus_tag="JN078_004170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001449236.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1331..>2179
                     /locus_tag="JN078_004171"
     CDS             1331..>2179
                     /locus_tag="JN078_004171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858398.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HAY9043140.1"
                     /translation="MIKSTNIQAIGSGIMHQINNIYSLTPFPLPMELTPSCNEFYLKA
                     WSEWEKNGTPGEQRNIAFNRLKICLQNQEAELNLSELDLKTLPDLPPQITTLEIRKNL
                     LTHLPDLPPMLKVIHAQFNQLESLPALPETLEELNAGDNKIKELPFLPENLTHLRVHN
                     NRLHILPLLPPELKLLVVSGNRLDSIPPFPDKLEGLAMANNFIEQLPELPFSMNRAVL
                     MNNNLTTLPESVLRLAQNAFVNVAGNPLSGHTMRTLQQITTGPDYSGPRIFFSMGNSA
                     TISAPEH"
BASE COUNT          732 a          463 c          364 g          620 t
ORIGIN      
        1 gcttcttacc atatttgaaa taaagctcaa tagcgcaaat tttttgttct tcagtaaaca
       61 tgtttcatct tctgagagtc caggaaatcg tccgcatccc cattaccgtc ttatatcact
      121 ggcgctgaca tgtgctcatt gatgaagtga atctgaatga catgttttgc catatcaacg
      181 ccaaccggtg tatatttcat ttgtggagtc tccagtctga ggacgcttta tgcatcccgt
      241 attgggcagt atgatgccgg aaagctgcga ggctccacac ctgccagttt caccctttta
      301 accatcatac tactccgtgt ttaattgtgt gggatgcgtt cattacattt taacagtgtc
      361 accccgtcgg ccacgaaaga taaacaggtg accagaaaag ggatcttcat ccagcacatg
      421 ctatatcttg aacgtaacaa cctgaccctc cgcacccgca tcaagcggct ggcacgtaaa
      481 acaatctgct tctcgcgttc cgtggaaatc cacgaaaagt catcggctcc ttcattgaaa
      541 aacacatatt ctactgattg gaagcgccac ccgaaaaagt atcgtttttt tacagtaaac
      601 ttcatttagc cgactataat gtaaaaaaat aaatttttta ccgaaatata acataaggaa
      661 gtaatatgct tacacaaact atattccctt gtcttcccaa aaaacaagaa aatatcatcc
      721 ctgaagtatc aaatactata ttagtatctt ctactgttac tacagatgga tgtactgttt
      781 ttaataaaca aaaacagcca tatacgaatt gcaaatacct gctaccaacc gaacgaaaaa
      841 gttgaaattc acagctacag aaatacaatg gttgacaaag ataaatgaag ccggaattaa
      901 tgaaaaacaa agccaacggt attctgattt ctgaagttaa tttcagactc gtttaagctc
      961 cattttcaaa aaaaatatat cagggtttgt tactaataac ttctgaaaac agaaaaaaaa
     1021 aaaaatagag cagtaattct atttcagaga ggagtaactc catctatcct cgatacgtac
     1081 tgaacgttat cgtgatatat tcatcatgct ttcttcacca ttattcgagt acagggagag
     1141 acgcaatgac cttaaatacc tttttatggc tgaattacca ttctcaggaa taacagcaga
     1201 ctccttccca tagacggctt agggggaaag caatacccgg agaaagggta caaagcaaac
     1261 tgttttaaaa ttaataagct atattctatt tcactagaat tcttatcgct gataagaaat
     1321 tttagttata atgattaaat caaccaatat acaggcaatc ggttctggta ttatgcatca
     1381 aataaacaat atatactcgt taactccatt tcctttacct atggaactga ctccatcttg
     1441 taatgaattt tatttaaaag cctggagtga atgggaaaag aacggtaccc caggcgagca
     1501 acgcaatatc gccttcaata ggctgaaaat atgtttacaa aatcaagagg cagaattaaa
     1561 tttatctgag ttagatttaa aaacattacc agatttaccg cctcagataa caacactgga
     1621 aataagaaaa aacctattaa cacatctccc tgatttacca ccaatgctta aggtaataca
     1681 tgctcaattt aatcaactgg aaagtttacc tgccttaccc gagacgttag aagagcttaa
     1741 tgcgggtgat aacaagataa aagaattacc atttcttcct gaaaatctaa ctcatttacg
     1801 ggttcataat aaccgattgc atattctgcc actattgcca ccggaactaa aattactggt
     1861 agtttctgga aacagattag acagcattcc cccctttcca gataagcttg aagggctggc
     1921 tatggctaat aattttatag aacaactacc ggaattacct tttagtatga acagggctgt
     1981 gctaatgaat aataatctga caacacttcc ggaaagtgtc ctgagattag ctcagaatgc
     2041 cttcgtaaat gttgcaggta atccactgtc tggccatacc atgcgtacac tacaacaaat
     2101 aaccaccgga ccagattatt ctggtcctcg aatatttttc tctatgggaa attctgccac
     2161 aatttccgct ccagaacac
//
LOCUS       DADMJB010000294         2096 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.299, whole genome shotgun sequence.
ACCESSION   DADMJB010000294 DADMJB010000000
VERSION     DADMJB010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.299"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..237)
                     /locus_tag="JN078_004172"
     CDS             complement(<1..237)
                     /locus_tag="JN078_004172"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043141.1"
                     /translation="MIFFDEEEAEVLRFDNFDDAVECCADLNIPFFVDAGNKKLVFWF
                     VRVDDEGYPEIARCTEREFATIPAGINADGMYCPE"
     gene            complement(1042..1281)
                     /locus_tag="JN078_004173"
     CDS             complement(1042..1281)
                     /locus_tag="JN078_004173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858310.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase"
                     /protein_id="HAY9043142.1"
                     /translation="MPQGGVISPLLSNIILNEFDQYLNKRYLSGKARKDRWYWNHSIQ
                     RGRSTAVKENWQWKPAVAYCCYADDCVPRRRVLGT"
     gene            complement(1476..1833)
                     /locus_tag="JN078_004174"
                     /pseudo
     CDS             complement(1476..1833)
                     /locus_tag="JN078_004174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707076.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(1844..2096)
                     /locus_tag="JN078_004175"
                     /pseudo
     CDS             complement(1844..2096)
                     /locus_tag="JN078_004175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612086.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
BASE COUNT          476 a          595 c          492 g          533 t
ORIGIN      
        1 ttcagggcaa tacatgccgt cggcgttgat accggcagga attgtcgcaa attcccgctc
       61 cgtgcagcgg gcaatttccg gatacccttc gtcatcaaca cgtacaaacc agaagaccag
      121 ttttttgttt ccggcatcca caaagaacgg aatattcagg tctgcgcaac actcaacggc
      181 atcgtcaaaa ttatcaaagc gcagaacctc agcttcttct tcgtcaaaaa aaatcatctt
      241 cgtgaagttt tacgacatag tggaggagtt tgcttctttg aggtgcaggt tttcgtttgc
      301 gtggtttagc tgaacgggcc atataactac ctgaaagaca atgatattgt ctgtttttat
      361 aacggtaatc acaggccatg acaagccgca gccgtcaggc cgcctactcg ggtcggttta
      421 gaacgcttat ttagtaccag atcttactta taataaaggg gcttggcagt ttggataaac
      481 tattgtcctt attccactaa tacaaacttt ttgtaaagta tattaaatat acttcatttc
      541 atactgaaat ccccggaagt attcaatcaa acaattacac cataaaagga agagggggcc
      601 ccaattaagt tgtcaagcat gtttactgcg caatcgcttg gtgctccgtc cctgtacccc
      661 gcattggtac tctggcgctc atggggcttc cacttgcgct tctcccttca catcggggtg
      721 acaggtccac gttccccaca agagcctgaa tcgacttcac gccgctttta tgccggatgc
      781 cgcgcaggca gtaaacatat cccacaggaa cgactccacc attgttttga catcatctat
      841 atgctttcga cacatcatca gcggttcact ttcgttcgtc tcttcgaacc atacctgatc
      901 ggctcacgtc cgaccttttc ccatctcgct caccaccaca tctcttaaat gcagcagcag
      961 tggatggttt ggtgcctgcg cctgcacgcc gacaccgagg ggccttccct catctcttgt
     1021 gccgcatggc tgcacaggga ctcacgtccc caggacgcgc cttcgtggca cacagtcatc
     1081 ggcatagcaa cagtaagcaa cggcaggttt ccattgccag ttttctttga cagcagtact
     1141 tcggcctcgc tggatactgt gattccagta ccagcgatcc tttctggctt ttccactcag
     1201 gtagcgttta ttcagatact ggtcgaactc attcagtatg atgttcgaca gcaacggcga
     1261 gatcacaccg ccctgtggca tactttcact gaccgcccgg aagagaccaa catcaacacg
     1321 gcgttttcca cagcagtctc ataaaacgtg catcactgat cctgcggcag acggctttca
     1381 tcagcagccg gtgatgtact gtgtcgaagt agctggacag gtcaccttca ataacccggc
     1441 gccccgtgtt tccccgcagt cggtgagctg taatagtacg tgatgtctcc cgcccacttc
     1501 tggttcgggc cactggcgta aaaatcctgc gtcagcagat tttctgatac aggcaggccg
     1561 tgtgcacggt aactgatcgg gctgaacttc tgggaggctt ttgcgctcag ttcctgacgg
     1621 cgcagactgg ctgccacggt ttttacgtta aagtggtaac cagagcacac agttcatccg
     1681 tcaggcgtgg ggcaccgtaa cgctggactg ggtaaaagcc ttgcggacaa cgctgtcgca
     1741 gtgctgacgg aactgctgac gtgtgtttat ccttgtccgc cgctgacacc acgtatacca
     1801 gccgctgcgg gccacccgga gtacgcggca cattgccttg atgacggttt acgcggtcgc
     1861 ctgcggcaac ggctttccgg ctgacggtag tgtggacctt tttaccccgg agaacaccgg
     1921 caagccccat aaccgccatg agacgtgcca cagtgcatct ggccactctg ataccttccc
     1981 gtaacaactg atgcctgact ttacgcacag cgtatacctg atgattctca tcgtatacgc
     2041 gcagtatctc tttcttcagc cagtcatcgc gctgcgcacg ggcactgcgt ttatca
//
LOCUS       DADMJB010000295         2050 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.300, whole genome shotgun sequence.
ACCESSION   DADMJB010000295 DADMJB010000000
VERSION     DADMJB010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2050)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2050)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2050
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.300"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(273..1727)
                     /locus_tag="JN078_004176"
     CDS             complement(273..1727)
                     /locus_tag="JN078_004176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector OspC family protein"
                     /protein_id="HAY9043143.1"
                     /translation="MKIPEAVNHINVQNNIDLVDGKTNPNKATKALQKNILRVTNSSS
                     SGISEKHLDHCANTVKNFLRKSIAAQSYSKMFSQGTSFKSLNLSIEAPSGARSSFRSL
                     EHLDKVSRHYISEIIQKVHPLSSDERHLLSIIINSNFNFRHQSNSNLSNNILNIKSFD
                     KIQSENIQTHKNTYSEDIKEISNHDFVFFGVEISNHQEKLPLNKTHHTVDFGANAYII
                     DHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFLDNFKEVVDEVSRYVHGNQGKTDVPIF
                     NTKDMRLGIGLHLIDFIRKSKDQGFREFCYNKNIDPVSLDRIINFVFQLEYHIPRMLS
                     TDNFKKIKLRDISLEDAIKASNYEEINNKVTDKKMAHQALAYSLGNKKADIALYLLSK
                     FNFTKQDVAEMEKMNNNRYCNLYDVEYLLSKDGANYKVLEYFINNGLVDVNKKFQKAN
                     SGDTMLDNAMKSKNPKMIDFLLKNGAILGKRFEI"
BASE COUNT          615 a          363 c          343 g          729 t
ORIGIN      
        1 tcccgtaaag acaggagtca agttcccgct ccgacataac tgcgtgcaat ggattttgaa
       61 ggaaccgtca gcccattccc cggaggcaaa catgggctgg caaaagtgta gcggtattag
      121 gcacagctat ttaggaaaga gggaccatct ccatctcatt aaatggacca cgccagacaa
      181 ttcactgtca tgctgatgct gcactgtggg gacagaatca ctcatgatga cttcgataat
      241 cgacgacatt attatttggc cgagctttta ggtcatatct caaatcgttt gcctaatatt
      301 gctccatttt ttaataaaaa atcaatcatt tttggatttt tgcttttcat tgcattgtca
      361 agcatagtgt ccccactatt tgctttttga aattttttgt ttacatcaac caatccatta
      421 ttgataaaat attctagcac tttatagttg gcaccatctt tactaagtaa gtattcaaca
      481 tcatacagat tacaatatct attgttgttc attttctcca tctctgcgac atcttgtttt
      541 gtaaaattaa atttagatag taaataaagt gctatatcag cttttttatt gcctaaagaa
      601 taagcaaggg cctgatgagc cattttttta tcagtcactt tattgttaat ctcttcataa
      661 ttagatgctt taatcgcatc ctccaaagat atgtctctga gttttatttt tttgaagtta
      721 tctgtactta gcattcttgg tatatgatac tcaagctgaa acacaaagtt tataattcta
      781 tccagactaa caggatcaat atttttgtta taacaaaact ctctgaatcc ttgatcttta
      841 ctctttctta taaaatcaat aagatgcaac ccaattccaa gcctcatatc tttagtgtta
      901 aatattggaa catcagtttt cccctgatta ccatgcacat acctgctaac ttcatccaca
      961 acctctttaa agttatctaa gaaaaatgat tggtgctcat ggtaaaaaac aggtggaata
     1021 gcattatcaa agtgatcggt taatgtcata tatccatatg gagagtcatg atcaatgata
     1081 tacgcattgg cgccaaaatc tacagtatga tgtgttttat ttagcgggag tttttcttga
     1141 tgattggaaa tttcaacccc aaaaaaaaca aaatcgtggt tagagatttc tttaatatcc
     1201 tcagagtatg tattcttatg tgtttgtata ttttcagact gaattttatc aaaggattta
     1261 atattaagaa tattatttga cagattagag ttactttgat gtctgaagtt aaaattagaa
     1321 ttaataataa tagaaagtaa gtgacgttcg tctgaagaaa gaggatgaac tttttgtatt
     1381 atctcagaga tatagtgcct ggacacctta tcgagatgct caagtgaccg aaatgatgac
     1441 cgtgctccag atggcgcttc aatagaaaga tttagtgatt tgaaactggt cccttgagaa
     1501 aacattttgc tataactttg cgctgctata gacttcctta aaaagttttt cacagtatta
     1561 gcacagtgat ctaaatgttt ttcacttatg ccagaagaag atgagtttgt tacgcgtaat
     1621 atattttttt gtaatgcttt tgttgcttta ttcggattcg tttttccatc aacaagatca
     1681 atattattct gaacattaat atgatttact gcttcaggta ttttcatccc ccccccaatt
     1741 atgtgcgttt ttatctgtgg ttatttagat aacattatct aactggacac tttcttgtat
     1801 gtattatagc taaatgaaca gattttaata tgttgtatgg ttttcactct gaaatcccct
     1861 gaatttaatc acgtttcctt tactgaaggc aattttaacc gtagtatcaa ttattaaccc
     1921 ttgggcttga tatccctctc ctcttctggg cacgggggat gtcagattac ttattacaga
     1981 aaccaaaaga attgtaagcg tcatctcagt gtcgtctatt tcaatgtctg atgattggcg
     2041 atgatagagt
//
LOCUS       DADMJB010000296         1962 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.301, whole genome shotgun sequence.
ACCESSION   DADMJB010000296 DADMJB010000000
VERSION     DADMJB010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1962)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1962)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1962
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.301"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..819
                     /gene="bluF"
                     /locus_tag="JN078_004177"
     CDS             <1..819
                     /gene="bluF"
                     /locus_tag="JN078_004177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="blue light-responsive regulator BluF"
                     /protein_id="HAY9043144.1"
                     /translation="FVLATEQSTYFEIPAEDSWLFIADGSDKELDSCALSPTINDHFA
                     FHPIVDPLSRRIIAFEAIVQKNEDSPSAIAVGQRKDGEIYTADLKSKALAFTMAHALE
                     LGDKMISINLLPMTLVNEPDAVSFLLNEIKANALVPEQIIVEFTESEVISRFDEFAEA
                     IKSLKAAGISVAIDHFGAGFAGLLLLSRFQPDRIKISQELITNVHKSGPRQAIIQAII
                     KCCTSLEIQVSAMGVATPEEWMWLESAGIEMFQGDLFAKAKLNGIPSIAWPEKK"
     gene            1024..1755
                     /locus_tag="JN078_004178"
     CDS             1024..1755
                     /locus_tag="JN078_004178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HAY9043145.1"
                     /translation="MAYYSIGDVAERCGINPVTLRAWQRRYGLLKPQRSEGGHRLFDE
                     EDIQRIEEIKRWISNGVPVGKVKALLETTSQDTEDDWSRLQEEMMSILRMANPAKLRA
                     RIISLGREYPVDQLINHVYLPVRQRLVLDHNTSRIMSSMFDGALIEYAATSLFEMRRK
                     PGKEAILMAWNVEERARLWLEAWRLSLSGWHISVLADPIESPRPELFPTQTLIVWTGM
                     APTRRQNELLQHWGEQGYKVIFHAP"
BASE COUNT          563 a          437 c          435 g          527 t
ORIGIN      
        1 tttgtccttg caaccgaaca atcaacctat ttcgagatcc ctgccgaaga ctcctggctt
       61 tttatcgctg acggatctga taaagaactt gattcctgtg ccctttcacc aactataaac
      121 gaccactttg cctttcatcc tattgtcgat cccttatcgc ggcggataat cgcttttgaa
      181 gccattgtgc aaaaaaatga agatagccca tcagccatag cggttgggca gcgtaaagac
      241 ggggaaatct acacagcgga tctcaaaagt aaggcgcttg cattcacgat ggcacacgca
      301 cttgagctcg gtgataaaat gatttcaatc aatctattac ctatgaccct ggttaacgaa
      361 cctgacgcag tctctttttt acttaatgaa ataaaggcca atgctctggt gcctgaacaa
      421 atcatcgttg aatttactga aagtgaagtc atatctcggt ttgatgagtt tgccgaagcg
      481 attaaatcgc taaaggctgc tggtatcagt gtagcaattg atcattttgg cgcaggtttt
      541 gctggtttgt tactcctgtc acgcttccag cctgacagaa ttaaaatcag tcaggaattg
      601 attaccaatg ttcataaaag tgggccacgg caggcaatta ttcaggcgat cataaaatgc
      661 tgtacatcac ttgaaattca agtcagtgct atgggcgtgg caacaccaga agagtggatg
      721 tggcttgaat ccgcaggaat tgagatgttt cagggagatc tgtttgctaa agctaaattg
      781 aatggtatcc cttccatagc gtggccagag aaaaaataat tttcagcaca ttctttcaca
      841 tgatttcagt aaatcatcgt gaaaatgaat acgttacgtt taaatttaat ccacattaaa
      901 aataatgttt catccaattt agctgaaatc ttatttatac tttgtacaat tttagcgtat
      961 attgtacaaa gtattattgg gtcgtgtaca ggcgacggag atttgtgacc gcaaggagga
     1021 attgtggctt attacagcat tggtgatgtt gctgaacgtt gcgggattaa tcctgtcact
     1081 ctccgggcct ggcaacgccg ctacggtttg ttaaaaccac agcgcagtga aggcggacac
     1141 cgactctttg atgaagaaga catacaacgc atcgaagaga tcaagcgttg gataagtaat
     1201 ggcgtccctg taggcaaagt taaagcatta ctggaaacca ccagccagga tacggaagat
     1261 gactggagcc gcctgcaaga agagatgatg tcaattcttc gcatggctaa tcctgccaaa
     1321 ctacgcgcga gaattatttc actgggtcga gagtacccag tagatcaatt gattaatcat
     1381 gtttaccttc ctgttcgcca gcgtctcgtg cttgatcaca acacctcccg cattatgagc
     1441 agtatgtttg acggcgcatt aattgaatac gcagcaacct cgcttttcga aatgcgccgt
     1501 aagcccggta aagaagccat tctgatggcg tggaatgttg aagagagagc acgattgtgg
     1561 ctggaagcat ggcgtttatc attgtcagga tggcacattt ctgttcttgc tgatcccatt
     1621 gaatcgccgc gcccggaact gttcccgacg caaacattga ttgtctggac aggcatggca
     1681 ccaacgagaa ggcaaaacga acttttacaa cactggggtg agcaaggtta taaagtcatc
     1741 tttcatgccc cctaatttca cctttatccc gccccttaga cagaatgtta taatctgaac
     1801 ccacaacagc atttgtaccg gagctgatcc gttgcaaaat gctcaccggg agaattcagg
     1861 taatccctct atcacactct gtacatatca cagccaaagg acagaccaga ttgaagtggt
     1921 aaaaccgatc gtgcacacta cgcagtctca caactaacaa ga
//
LOCUS       DADMJB010000297         1949 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.302, whole genome shotgun sequence.
ACCESSION   DADMJB010000297 DADMJB010000000
VERSION     DADMJB010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1949)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1949)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1949
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.302"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(24..>1949)
                     /gene="pdeF"
                     /locus_tag="JN078_004179"
     CDS             complement(24..>1949)
                     /gene="pdeF"
                     /locus_tag="JN078_004179"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase
                     PdeF"
                     /protein_id="HAY9043146.1"
                     /translation="FIIIIIIILCWGGYRVFTPRRNNVSHGDTRLISQRIFWQIVFPA
                     TLFLILFQFAAFVGLLASRENLVGVMPFNLGTLINYQALLVGNLIGVPLCYFIIRVVR
                     NPFYLRSYYSQLKQQVDAKVTKKEFALWLLALGALLLLLCMPLNEKSTIFSTNYTLSL
                     LLPLMMWGAMRYGYKLISLLWAVVLMISIHSYQNYIPIYPGYTTQLTITSSSYLVFSF
                     IVNYMAVLATRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDAPWSALCYLRIPGME
                     MLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQERITALDS
                     HLKQFRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAPENMQRR
                     GAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGDVYHEILLRMKGENDELI
                     SPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAHRFAINLSPTSVCQARFPF
                     EVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTGYASY
                     ARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIREA
                     VLSLGIDYMQGYLIGKP"
BASE COUNT          572 a          471 c          439 g          467 t
ORIGIN      
        1 tcattcaacg tatcaattaa cggctacggc ttaccaataa gataaccctg catataatcg
       61 atccccaaag agagcaccgc ctcgcggatc tcttcgtttt caacgtactc tgccactacc
      121 cgcattttct tcattcgcgc caggtggcaa atcgatgcca ctatctgata atccagacta
      181 tttgacacaa tattgcggat aaaactgccg tcaattttaa gcagatcggc attcacattt
      241 ttaagccgtg catagctggc gtagccggtg ccgaaatcat caatcgcaat ctggcagcct
      301 aattcctgaa gatgctgcaa ggtgatttgc gcctgcttaa cattggtcag agcattactt
      361 tcggtgactt caaaaataag ttgccacgct tcaatctgat atttagccag caactgactg
      421 acttcaaaag gaaaacgagc ctgacatacc gaggttggag acagattaat agcaaaacgg
      481 tgagcgggca tcttcgctct gttttcagcc ataaattgca gcgtatgctc aatgacccac
      541 atgtcgatac tcgacgataa accaaattcg tgcgcgaccg gcaagaagct atcggggctg
      601 atcagttcat cattctcacc tttcatgcgc agaagaattt catggtaaac atcaccacgc
      661 ataccggtaa tcggctgggc catcaggaaa aaatggttgt gttccagcgc ctgctgtagt
      721 cgattcatca tcgcgacttt atctttcaat tcgcgttgca aatacattgc cccgcgacgc
      781 tgcatatttt ccggggcgtt ggtcacgatg gaaagttcgg cgaccgtatt tagctctccc
      841 agcagcaggt agatatgatt cactggcgag cgcacatagc agtaactgac gccaatctgc
      901 ggttgcatcg gcatgccatc ccaaaagaaa cgaaattgct tgagatggct atccagtgcg
      961 gtaatgcgct cctggtgcga ttctgtattc agtcgcagcg cgagatcgtt acccgaaagc
     1021 tgataaacat cttcacccgg ttccagcaag ggtgacagcc agtgagaaag tttttgcttg
     1081 tattgaatcc gcagcatgat gccatagttc ttaaccagca tttccatgcc agggatgcgt
     1141 aaataacaaa gcgcagacca gggggcatca cgcaacgcgc gattcagggc gcgaacattt
     1201 ggcagatgaa ccaccgggtc cacatacgca agccgctgaa tgcgtctgac taccgctctc
     1261 tgacgggttg ccagtacagc catataattg acaataaaag agaataccag ataactggag
     1321 gaggttatgg tcagctgcgt ggtatagcca ggataaatgg gaatgtaatt ttgatagctg
     1381 tggatgctga tcatcaacac gaccgcccag agcagagaaa tcagcttata accatagcgc
     1441 atcgctcccc acatcatcag gggcagcaat aatgacaagg tataattggt gctaaaaatt
     1501 gtgctttttt catttaacgg catgcataac agcaacaata aagcacctaa tgccagtagc
     1561 cagagcgcga actctttttt ggtgactttg gcatcaacct gctgttttaa ttgcgaataa
     1621 tagctacgta aataaaatgg atttcgcact acccgaatga tgaagtagca cagcgggaca
     1681 ccgatcagat tacccaccag taaggcctga taattgatta aagtcccgag gttaaaaggc
     1741 atgacaccga ccagattttc tctgctcgcc aataatccta caaatgcagc aaactggaaa
     1801 agtatcagaa acagcgttgc aggaaacaca atctgccaga atatacgctg ggaaattaaa
     1861 cgggtatcac catgtgaaac gttgttacgc cggggagtaa agaccctgta accgccccaa
     1921 cagagaatga taatgataat gataataaa
//
LOCUS       DADMJB010000298         1882 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.304, whole genome shotgun sequence.
ACCESSION   DADMJB010000298 DADMJB010000000
VERSION     DADMJB010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1882)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1882)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1882
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.304"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            368..1156
                     /gene="virF"
                     /locus_tag="JN078_004180"
     CDS             368..1156
                     /gene="virF"
                     /locus_tag="JN078_004180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858179.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family invasion system transcriptional
                     regulator VirF"
                     /protein_id="HAY9043147.1"
                     /translation="MMDMGHKNKIDIKVRLHNYIILYAKRCSMTVSSGNETLTIDEGQ
                     IAFIERNIQINVSIKKSDSINPFEIISLDRNLLLSIIRIMEPIYSFQHSYSEEKRGLN
                     KKIFLLSEEEVSIDLFKSIKEMPFGKRKIYSLACLLSAVSDEEALYTSISIASSLSFS
                     DQIRKIVEKNIEKRWRLSDISNNLNLSEIAVRKRLESEKLTFQQILLDIRMHHAAKLL
                     LNSQSYINDVSRLIGISSPSYFIRKFNEYYGITPKKFYLYHKKF"
     gene            complement(1098..1508)
                     /locus_tag="JN078_004181"
     CDS             complement(1098..1508)
                     /locus_tag="JN078_004181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001409096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HAY9043148.1"
                     /translation="MPFHRPTKWVQYISAAPALSQQAVDQEWSYMDFLEHLLHEEKLA
                     RHQRKQAMYTRMAAFPAVKTFEEYDFTFATRAPQKQLQSLRSLSFIERNENIVLLGPS
                     GVGKTHLAIAMGYEAFKIFYDISKISLELYHNIH"
     gene            1519..1882
                     /locus_tag="JN078_004182"
                     /pseudo
     CDS             1519..1882
                     /locus_tag="JN078_004182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611947.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          591 a          336 c          374 g          581 t
ORIGIN      
        1 aatatcaaca ccaaccggat ttgtggagcc tccagtctga aggggcttta tgcgttccgt
       61 ataggatatt atgatgctgg agttttgcga agctccactc ctttccgaac atttacacag
      121 atattgccta agaaaagtga aaccataata tggttatagt ccctttcagt gcaaatactt
      181 agcttgttgc acagagaaat agaagctgca taagctcttt cttcaaaaaa tgtaaataaa
      241 gttaaatata ggaaaaatta cttaatctat cttaataacg gaaagatttt gtatacaatc
      301 actgttacag aaatttctta gttactctgt aaacactaaa tatagtttgg tatattctgt
      361 tgaatttatg atggatatgg gacataaaaa caaaatagat ataaaggttc gcttgcataa
      421 ctatattatt ttatatgcaa aaaggtgttc aatgacggtt agctcaggca atgaaacttt
      481 gactatcgat gaagggcaaa ttgcttttat agagcgaaat atacaaataa acgtctccat
      541 aaaaaaatct gatagcatta atccatttga gattataagc cttgacagaa atttattatt
      601 aagcattatt agaataatgg aaccaattta ttcatttcaa cactcctatt ctgaggagaa
      661 aagggggtta aacaaaaaaa tattcctcct ctctgaggag gaggtttcta tcgatttgtt
      721 caaatctata aaagagatgc cttttggcaa aagaaagatc tatagtttag cttgcctttt
      781 atcagctgtt tctgatgagg aagctttata tacttcgata tcgatagctt cttctcttag
      841 tttttctgat cagataagga agattgttga aaaaaacatc gagaagagat ggcgtctttc
      901 tgatatttca aataacttga atttatcaga aatagctgtt agaaaacgat tggagagtga
      961 aaaattaaca tttcaacaaa tccttcttga tattcgcatg catcatgcag caaagctttt
     1021 attgaatagt caaagctata ttaatgatgt atcaagactt atcggaatat caagcccatc
     1081 ttattttata aggaaattta atgaatatta tggtataact ccaaagaaat tttacttata
     1141 tcataaaaaa ttttaaatgc ttcatagccc atcgctattg ccagatgggt tttccccaca
     1201 cctgatggcc ctagtaatac gatattttca ttacgttcta tgaagctgag tgagcgtaac
     1261 gactggagtt gcttctgcgg tgctctggtg gcgaatgtga agtcatactc ttcgaacgtt
     1321 ttcaccgccg ggaaggctgc cattcgggta tacatcgcct gtttacgttg atgacgtgcc
     1381 agtttttctt catgaagcag atgctccagg aagtccatat aactccattc ctggtctact
     1441 gcctgttgtg acagcgcagg cgctgcgctt atgtactgca cccattttgt tggacgatga
     1501 aatggaatag cccctaatat gtcaaagcca aaataccctt ttgaaaagcg ccttgaagtc
     1561 gtgaatcact acttcactac tgatgatggt tacaggatca tctcggcacg ttttggtgtc
     1621 cccgaaccca ggtcaggaca tgggttgccc tctatgaaaa acatggagaa aaaggcttaa
     1681 ttcccaaacc taaaggtgtt agtgctgatc cagagttgcg tattaaggtc gtgaaagctg
     1741 tgattgagca gcacatgtcc cttaatcagg ctgctgctca ctttatgctt gctggtagtg
     1801 gttctgtagc caggtggctg aaggtttatg aagagcgcgg agaagctggt ttacgcgcgc
     1861 tcaagattgg caccaaaaga aa
//
LOCUS       DADMJB010000299         1827 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.305, whole genome shotgun sequence.
ACCESSION   DADMJB010000299 DADMJB010000000
VERSION     DADMJB010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1827
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.305"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(45..190)
                     /locus_tag="JN078_004183"
                     /pseudo
     CDS             complement(45..190)
                     /locus_tag="JN078_004183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001626279.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytoplasmic protein"
     gene            complement(455..1300)
                     /locus_tag="JN078_004184"
     CDS             complement(455..1300)
                     /locus_tag="JN078_004184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001280511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4942 domain-containing protein"
                     /protein_id="HAY9043149.1"
                     /translation="MSAITVSRPEVVNGHTDVICSTSVSHILAVRKTTLLQIDTLIRQ
                     LAEISSMTESIGGKTSLDWAMKQDFRCGCWLMEKPETAMKAITRNLDREIWRDLMQRS
                     GMLSLMDAQARDTWYRSLEYDNFPEISEANIWSTFEQLHQNKDEVFERGVINVFRGLS
                     WNYKTNSPCKFGSKIIVNNLVRGDRWGLHLITGQQADRLADLERMLYLFSGKPIPDNR
                     ENIIIRLDDHIRSVQGKACYEDEMFNIRYFKKGSAHITFRKPELVDRLNDIIARHYSE
                     MLPSL"
     gene            complement(1385..1582)
                     /locus_tag="JN078_004185"
     CDS             complement(1385..1582)
                     /locus_tag="JN078_004185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF957 domain-containing protein"
                     /protein_id="HAY9043150.1"
                     /translation="MKLLTTETALDILIAWLQDNIDCESGIIFDNDEDKTDSAALLPC
                     IEQAWEDIRTLRQLQLPDQNR"
     gene            complement(1602..>1827)
                     /locus_tag="JN078_004186"
     CDS             complement(1602..>1827)
                     /locus_tag="JN078_004186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043151.1"
                     /translation="QTNDDGETEWIHFTGSGYLLRTDAWSYPVLRLKRLGLSRTFRRL
                     VVTLTRRYGVSLIHLDAGAECLPGLPTFDW"
BASE COUNT          472 a          427 c          450 g          478 t
ORIGIN      
        1 agtcgtataa aaaagggtgt tatggagcgt gtaaaacaac atcttcacct taatggcgat
       61 acagttggct gagagccagc agggggcaaa tcacctgcaa ataaacacgg cacatgctgg
      121 cgcgcatatc gcggatgcgt tcgaggacag aagaaccgac aggcggattc ttcagccgct
      181 catcgtccat cacaaaacct tagaccaggt attcctgaag ccgattgaat attgagcagt
      241 agaaaatatc tggattgaca gtattacaag gggttggaga acgtcagaag aggcattttg
      301 gcggaagatc acaggagtcg aatatgagta ttaatatatt gattttaaat gattaatctg
      361 tgttggataa atgaataacc cccataagaa cccccaaata aatttgcgtg agggaatgaa
      421 gctaaaatac ataattgaat tcattcttag agctttataa tgaaggtaac atttccgaat
      481 agtgcctggc aataatatca tttagccgat caaccagttc tggtttcctg aacgtgatgt
      541 gtgcggagcc cttcttaaag tatctgatgt tgaacatctc atcttcatag cacgctttgc
      601 cctgaacgga gcggatgtga tcatccagcc gaatgatgat attttcccgg ttgtcaggga
      661 ttggtttgcc actgaacaga tacagcattc tttccaggtc ggcgagtcga tctgcctgtt
      721 gcccggtgat aagatgcaat ccccaccggt cccccctcac cagattgttg acgataattt
      781 tactgccaaa tttacagggg gagttggttt tgtaattcca gctcagccct ctgaagacgt
      841 tgatcactcc tcgctcaaac acttcatcct tattctggtg cagttgctca aatgtgctcc
      901 aaatgttcgc ttcactgatt tccggaaagt tatcgtactc cagtgagcgg taccatgtat
      961 cacgggcctg cgcatccatt aatgacagca tcccggaacg ttgcatcagg tcacgccaga
     1021 tttcgcggtc aagattgcgg gtgatggctt tcattgcggt ttccggtttc tccatgagcc
     1081 agcagccaca gcgaaaatcc tgtttcatgg cccagtccag agaagtttta cctccaatac
     1141 tttctgtcat tgatgagatt tcagccagtt gccggataag tgtgtcgatt tgcagcagtg
     1201 tagtctttcg cacagccaga atgtggctga ctgaggtgga gcagataacg tccgtatgcc
     1261 cgttgaccac ttccggacgg gagactgtga ttgcagacat aatcgatatt ccttttcgca
     1321 gataaatgaa aacgccagcc ctgttcaggc tggcgtcagt ggaatgaagt atggtgaatg
     1381 agactcaccg gttctggtct ggaagctgca actggcgcag ggtacggata tcttcccagg
     1441 cctgttcaat acagggcagc agtgctgccg aatccgtttt atcctcatcg ttgtcgaaga
     1501 taatccctga ttcgcagtca atattgtcct gcagccacgc aatcagaata tccagcgccg
     1561 tttctgtggt taataatttc atccagtgtc ttttgtcctg attaccagtc gaaagtgggg
     1621 agccccggca gacattctgc gccggcgtcc agatgaatga gactgacgcc ataacgccgg
     1681 gtgagagtga cgaccagacg acggaacgtt ctggacaggc ccaggcgttt aagccgcaga
     1741 accgggtacg accatgcatc ggtacgtaac agatagccgc tgcctgtaaa atgaatccat
     1801 tctgtttcgc cgtcgtcatt agtctgg
//
LOCUS       DADMJB010000300         1821 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.306, whole genome shotgun sequence.
ACCESSION   DADMJB010000300 DADMJB010000000
VERSION     DADMJB010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1821)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1821)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1821
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.306"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(102..380)
                     /locus_tag="JN078_004187"
                     /pseudo
     CDS             complement(102..380)
                     /locus_tag="JN078_004187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001945043.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
     gene            complement(530..1390)
                     /locus_tag="JN078_004188"
     CDS             complement(530..1390)
                     /locus_tag="JN078_004188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032489893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A broad-spectrum beta-lactamase TEM-1"
                     /protein_id="HAY9043152.1"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGY
                     IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE
                     YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL
                     DRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPL
                     LRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIA
                     EIGASLIKHW"
     gene            complement(1573..>1821)
                     /locus_tag="JN078_004189"
     CDS             complement(1573..>1821)
                     /locus_tag="JN078_004189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HAY9043153.1"
                     /translation="GQMVVTILSAVAQAERRRILERTNEGRQEAKLKGIKFGRRRTVD
                     RNVVLTLHQKGTGATEIAHQLSIARSTVYKILEDERAS"
BASE COUNT          473 a          484 c          408 g          456 t
ORIGIN      
        1 aagcgacttc tcctatcccc tgggaacaca tcaatctcac cggagaatat cgctggccaa
       61 agccttagcg taggattccg ccccttcccg caaacgaccc caaacaggaa acgcagctga
      121 aacgggaagc tcaacaccca ctgacgcatg ggttgttcag gcagtacttc atcaaccagc
      181 aaggcggcac tttcggccat ccgccgcgcc ccacagctcg ggcagaaacc gcgacgctta
      241 cagctgaaag cgaccaggtg ctcggcgtgg caagactcgc agcgaacccg tagaaagcca
      301 tgctccagcc gcccgcattg gagaaattct tcaaattccc gttgcacata gcccggcaat
      361 tcctttccct gctctgccat aaggggtctg acgctcagtg gaacgaaaac tcacgttaag
      421 ggattttggt catgagatta tcaaaaagga tcttcaccta gatcctttta aattaaaaat
      481 gaagttttaa atcaatctaa agtatatatg agtaaacttg gtctgacagt taccaatgct
      541 taatcagtga ggcacctatc tcagcgatct gtctatttcg ttcatccata gttgcctgac
      601 tccccgtcgt gtagataact acgatacggg agggcttacc atctggcccc agtgctgcaa
      661 tgataccgcg agacccacgc tcaccggctc cagatttatc agcaataaac cagccagccg
      721 gaagggccga gcgcagaagt ggtcctgcaa ctttatccgc ctccatccag tctattaatt
      781 gttgccggga agctagagta agtagttcgc cagttaatag tttgcgcaac gttgttgcca
      841 ttgctgcagg catcgtggtg tcacgctcgt cgtttggtat ggcttcattc agctccggtt
      901 cccaacgatc aaggcgagtt acatgatccc ccatgttgtg caaaaaagcg gttagctcct
      961 tcggtcctcc gatcgttgtc agaagtaagt tggcagcagt gttatcactc atggttatgg
     1021 cagcactgca taattctctt actgtcatgc catccgtaag atgcttttct gtgactggtg
     1081 agtactcaac caagtcattc tgagaatagt gtatgcggcg accgagttgc tcttgcccgg
     1141 cgtcaacacg ggataatacc gcaccacata gcagaacttt aaaagtgctc atcattggaa
     1201 aacgttcttc ggggcgaaaa ctctcaagga tcttaccgct gttgagatcc agttcgatgt
     1261 aacccactcg tgcacccaac tgatcttcag catcttttac tttcaccagc gtttctgggt
     1321 gagcaaaaac aggaaggcaa aatgccgcaa aaaagggaat aagggcgaca cgaaaatgtt
     1381 gaatactcat actcttcctt tttcaatatt attgaagcat ttaccagggt tattgtctca
     1441 tgagcggata catatttgaa tgtatttaga aaaataaaca aataggggtt ccgcgcacat
     1501 ttccccgaaa agtgccacct gacgtctaag aaaccattat tatcatgaca ttaacctata
     1561 aaaataggcg tatcacgagg ccctttcgtc ttcaagaatt ttataaaccg tggagcgggc
     1621 aatactgagc tgatgagcaa tttccgttgc accagtgccc ttctgatgaa gcgtcagcac
     1681 gacgttcctg tccacggtac gcctgcggcc aaatttgatt cctttcagct ttgcttcctg
     1741 tcggccctca ttcgtgcgtt ctaggatcct ccggcgttca gcctgtgcca cagccgacag
     1801 gatggtgacc accatttgcc c
//
LOCUS       DADMJB010000301         1815 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.307, whole genome shotgun sequence.
ACCESSION   DADMJB010000301 DADMJB010000000
VERSION     DADMJB010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1815
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.307"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(316..1464)
                     /locus_tag="JN078_004190"
     CDS             complement(316..1464)
                     /locus_tag="JN078_004190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9043154.1"
                     /translation="MSTYTRPVMLLLSGLLLLTLAIAVLNTLVPLWLAQEHMSTWQVG
                     VVSSSYFTGNLVGTLLTGYVIKRIGFNRSYYLASFIFAAGCAGLGLMIGFWSWLAWRF
                     VAGVGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYVGTFLGQLLVSKVSTELMSV
                     LPWVTGLTLAGILPLLFTRVLNQQAENHDSTSITSMLKLRQARLGVNGCIISGIVLGS
                     LYGLMPLYLNHKGVSNASIGFWMAVLVSAGILGQWSIGRLADKFGRLLVLRVQVFVVI
                     LGSIAMLSQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGS
                     LLGPSFTAMLMQNFSDNLLFIMIASVSFIYLLMLLRNAGHTPKPVAHV"
BASE COUNT          574 a          464 c          394 g          383 t
ORIGIN      
        1 ggttggcgta gttattaaca acgttgccaa aaccccagac agtgataaaa gacatcagcg
       61 caatgttgta ccatcgcagc tgtttttcct gaacattccc agccatagac aaatccttcg
      121 ccaaaattat aggggcatct gtaaaacgag ggattatgcg cggcaaataa gaagtgcgga
      181 aatagcgaaa tgcaaaatta taacctgctg cacattttat ttttaaacga ataaaatttg
      241 gaataaagca agtcagatag aagaaacaaa aaagcagagt gtgaaacagt aagttcacac
      301 tctgcttgaa ttcatttaca cgtgagcaac gggtttcggc gtatgaccgg cgttgcgcag
      361 cagcatcagc aaatagataa acgatacgct ggcgatcatg ataaacaata aattatcgga
      421 gaaattctgc attagcatag cggtaaatga cgggccaagc agacttccca cagtatagct
      481 caacagtaag gcctggttca tcgccaccag ttgatgatgt tcaactttct cgcaagccca
      541 tgccatcgcc accggatata gcgtaaagcc agcggcaccg aggatgaata acgctggggc
      601 catcgccgcc tggctaagca tcgcgatact gccgagaatg acgacaaaga cctgaacacg
      661 caacaccagc agtcgaccaa acttatccgc cagacgtcca atcgaccatt gtccaaggat
      721 acccgcactg accagtaccg ccatccagaa accaatgctg gcattgctca cccctttgtg
      781 attgaggtac agcggcatca ggccatatag agatcccaga acgattcctg agataatgca
      841 gccattcacg ccaagccgcg cctgacggag ttttagcatt gacgtaattg acgtcgaatc
      901 atggttttca gcctgctgat tcagcacacg cgtaaacaac agcggtaaga tccctgccaa
      961 cgtcaaacct gtaacccacg gcaatacgga catcagctcg gttgaaactt tgctgaccag
     1021 taactggcct aaaaacgttc ccacgtaata aaccatcata tacgcagcaa gcaaacgccc
     1081 acggttacgt gacgtcccac tgcacatcag cgcgctctca acaaccaccc aaatcatggc
     1141 acagccgacg cccgcgacaa aacgccaagc caaccagctc cagaatccaa tcatcaggcc
     1201 aaggccggca cagccagcgg caaaaatgaa ggaggccaga taatagctgc ggttaaagcc
     1261 aatgcgctta atgacatacc ctgtcagcaa tgtaccgaca aggttgccgg taaaatagga
     1321 tgagctgaca acgcctacct gccatgtgga catgtgttcc tgggcgagcc aaagcggcac
     1381 gagtgtattt aacaccgcaa tcgccagagt caacaaaagc aggccagaca gcaaaagcat
     1441 gacaggccgg gtatacgtgg acatgaatta aaaccgtgag gaagttcaaa tttcatgcgc
     1501 atcatgccac cgccaaaaca ttgtcaatga gtgaaaatac gcgatatccc agcggcggta
     1561 ttatcgattt atattactca ttcataacgc taatgctgaa gagatgatta gtctcatctg
     1621 attgttttta ttgaactaac acaaatttca tacgcttcgt tcagtcgaaa aatttcatgg
     1681 tcacagcaaa ctcatatttc ccgtctatgc tttcagagca atgcatcgcg tctgatcgat
     1741 ttcagacgta ccactgactc tcgaaaggag aagaggatga ccaaaccgta tgttcgtctt
     1801 gataaaaatg atact
//
LOCUS       DADMJB010000302         1764 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.308, whole genome shotgun sequence.
ACCESSION   DADMJB010000302 DADMJB010000000
VERSION     DADMJB010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1764)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1764)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.308"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..279
                     /locus_tag="JN078_004191"
     CDS             <1..279
                     /locus_tag="JN078_004191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309007.1"
                     /note="oxidoreductase, Fe-S subunit; terminal electron
                     transfer protein for the reduction of DMSO; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase subunit B"
                     /protein_id="HAY9043155.1"
                     /translation="PQYNETKGHMTKCDGCYDRVAEGKKPICVESCPLRALDFGPIDE
                     LRKKHGDLAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPKEV"
     gene            281..1144
                     /locus_tag="JN078_004192"
     CDS             281..1144
                     /locus_tag="JN078_004192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit"
                     /protein_id="HAY9043156.1"
                     /translation="MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEAQQRV
                     IACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSNEIASGSIFFAVGGIGW
                     LLAMLKKLSPALRTLWLIVTMVLGVIFVWMMVRVYNSIDTVPTWYSIWTPMGFFLTMF
                     MGGPLLGYLLLSLAGVDGWAMRLLPAISVLALVVSGVVSVMQGAELATIHSSVQQAAA
                     LVPDYGALMSWRIVLLAVALCLWIAPQLKGYQPAVPLLSVSFILLLAGELIGRGVFYG
                     LHMTVGMAVAS"
     gene            complement(1179..1760)
                     /locus_tag="JN078_004193"
     CDS             complement(1179..1760)
                     /locus_tag="JN078_004193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005135793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HAY9043157.1"
                     /translation="MLVDHQAGLLSLVRDIEPDKFKNNVLALGDQAKYFNLPTILTTS
                     FETGPNGPLVPELKAQFPDAPYIAHPGNINAWDNEDFVKAVKATGKKQLIIAGVVTEV
                     CVAFPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRMSQAGAQLMTWFGVACELHRD
                     WHNDIEGLATLFSNHIPDYRNLMTCYDTLTKQK"
BASE COUNT          379 a          425 c          490 g          470 t
ORIGIN      
        1 ccgcaatata acgaaacgaa aggccatatg accaaatgcg atggttgtta tgaccgtgtt
       61 gcggagggta aaaagccgat ctgtgttgaa tcttgtccgc tgcgggcgct ggatttcggc
      121 cctatcgacg agctgcgtaa aaaacatggc gatctggcgg ccgttgcgcc gttgccgcga
      181 gctcacttta ccaaaccgaa tattgtgatc aaacccaatg ccaatagccg cccgaccggg
      241 gataccactg gctatctggc aaacccgaag gaggtgtgag atgggaagtg gatggcatga
      301 atggccgctg atgatcttca cggtcttcgg gcaatgtgta gcaggtggtt ttatcgttct
      361 ggctttggcg ctgctcaaag gcgacctgcg agcagaagcc cagcagcgtg ttatcgcctg
      421 catgtttggt ttatgggtgc tgatgggcat tggctttatc gcctctatgc tccatcttgg
      481 ttcaccaatg cgcgctttta actcgctcaa ccgggtaggg gcttcagcac tcagtaacga
      541 aatcgccagc ggttcgatct tttttgccgt aggcggcatc ggctggttgc tggcaatgct
      601 gaaaaagctg tcaccggcat tgcgtacgct gtggctgata gtgacgatgg ttcttggcgt
      661 catctttgtc tggatgatgg tgcgtgtgta taacagcatt gataccgttc cgacctggta
      721 cagcatctgg acgccgatgg gcttcttcct gacgatgttt atgggcggcc cgttactggg
      781 ttacctgttg ttgagtctgg ctggcgtcga tggctgggcg atgcgtctgc tgccagcaat
      841 ttctgtactg gcactggtag tgagtggcgt ggtgtcagtg atgcagggcg cagagctggc
      901 gactattcat agttctgtgc agcaggccgc agcgctggtg ccggactatg gtgcgctgat
      961 gtcctggcgg atcgtgcttt tggccgttgc cctgtgcttg tggattgcac cacagctaaa
     1021 aggttatcag cctgcggttc cgctactttc tgtatcattc attctgcttc tggcagggga
     1081 attaatcggt cgcggcgtat tctatggttt gcatatgacc gtggggatgg ccgtcgcaag
     1141 ctaatcataa caaccggggt ttcggccccg gttctctttt atttctgctt cgttaacgtg
     1201 tcataacagg tcatcaaatt acgataatca ggaatgtggt tagagaacaa cgtcgccagt
     1261 ccttcaatat cattatgcca gtcgcgatgc agctcgcacg ccacgccgaa ccatgtcatc
     1321 aattgcgcac cagcttgcga catgcgatcc catgccgaat gccgggtaat ttcattaaag
     1381 gtccctgacg cgtcagtcac gacaaagacg tcaaaccctt cttcaatggc tgaaagcgcc
     1441 gggaatgcca cgcaaacttc ggttaccaca ccggcaataa ttaactgttt tttacctgtc
     1501 gctttgacag cttttacaaa atcttcgtta tcccaggcgt taatatttcc cgggtgagca
     1561 atgtaaggtg catcggggaa ttgtgctttc agttctggaa ctaatgggcc gttaggaccg
     1621 gtttcaaaac tggtggtaag aatagttggt aagttgaaat acttagcctg gtcacccagc
     1681 gccagcacgt tatttttaaa cttatcgggt tcgatatccc gtacaaggga aagtaaacca
     1741 gcctggtgat caacaagcaa aacg
//
LOCUS       DADMJB010000303         1736 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.309, whole genome shotgun sequence.
ACCESSION   DADMJB010000303 DADMJB010000000
VERSION     DADMJB010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.309"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            67..807
                     /locus_tag="JN078_004194"
     CDS             67..807
                     /locus_tag="JN078_004194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone"
                     /protein_id="HAY9043158.1"
                     /translation="MFFNTKHTTALCFVTCMAFSSSSIADIVISGTRVIYKSDQKSVN
                     VRLENKGNNPLLVQSWLDTGDDNAEPGSITVPFTATPPVSRIDAKRGQTIKLMYTAST
                     SLPKDRESVFWFNVLEVPPKPDAEKVANQSLLQLAFRTRIKLFYRPDGLKGNPSEAPL
                     ALKWFWSGSEGKASLRVTNPTPYYVSFSSGDLEASGKRYPIDVKMIAPFSDEVMKVTG
                     LNGKASSAKVHFYAINDFGGTIEGNASL"
     gene            842..1736
                     /locus_tag="JN078_004195"
                     /pseudo
     CDS             842..1736
                     /locus_tag="JN078_004195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414681.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus outer membrane usher protein"
BASE COUNT          502 a          367 c          369 g          498 t
ORIGIN      
        1 aatagtgtta ataatttcta tttttatatt attccctgtt ttaattaact ctgtcaggga
       61 tggtttatgt tttttaacac caaacataca acagctttat gcttcgtaac ctgtatggct
      121 tttagttcat cgtctattgc ggacattgtc atttcgggta ctcgcgtaat atataaaagc
      181 gatcaaaaaa gtgtcaacgt acgtctggaa aataaaggga ataacccgtt gcttgtccag
      241 agttggttag atactggcga tgacaacgct gagcctggca gtattacagt cccttttact
      301 gccacgccgc cagtatcgcg tattgatgcc aaacgtgggc aaacaatcaa attaatgtac
      361 acagccagca cctcactgcc taaagacaga gagagcgtgt tctggtttaa cgtactggaa
      421 gttccaccaa aaccagatgc agaaaaggtc gcgaatcaaa gtctgctgca actggcattt
      481 cgcacacgta taaaactttt ctatcgcccg gatggattga agggaaatcc ctctgaagcc
      541 ccgttagccc tgaagtggtt ctggtcaggt tcagaaggta aggcgtcatt gcgagtgacc
      601 aatccaaccc cttactacgt ctcttttagc agtggtgatt tagaagctag cggtaaacgc
      661 tatccgattg atgtgaaaat gattgcacca tttagtgatg aggtcatgaa agtcactggc
      721 cttaatggca aagcaagttc tgcaaaagta catttttacg ccattaatga ttttggtggc
      781 accattgaag gtaatgccag tctgtaatca ggcaaggata taattccgca ggaagcataa
      841 cgtgactata aaaccaacta aaaattatca taatcatctg acccgtatcg ctacgttttg
      901 cgcgctgctg tattgcaata gtgctttctg tgctgaactt gttgaatatg accatacctt
      961 cctgatgggg cagaatgcct caaatattga tctcagccgg tatagtgaag gtaaccctgc
     1021 tataccgggt atgtacgacg tcagtgttta tgtcaacgat caacctatta ttaaccaaag
     1081 cattacattt attgaaattg aaggaaaaaa aacgcacaag cctgtatcac acttaagaat
     1141 ttattgcagt ttcatataaa ttctcccgat ataaataacg aaaaagccgt tctgcttgcc
     1201 agggatgaaa cactcggcaa ttgccttaat ttgacggaaa ttattcctca ggcttctgtt
     1261 cgttatgacg ttaacgagca acgtctggat atagacgttc ctcaggcatg ggtaatgaaa
     1321 aattaccaaa actatgttga tccatcgtta tgggaaaatg gcattaatgc ggccatgttg
     1381 tcatacaacc tcaacggata tcatagtgaa actcctggtc gaagaaatga cagcatttat
     1441 gctgctttta acggtgggat gaatttaggt gcatggcgac tgcgtgcctc aggcaactac
     1501 aactggatga ccgattctgg cagtaattat gattttaaga atcggtatat acagcgtgat
     1561 atcgcctcgc tgcgttctca actcattctt ggtgagtctt atacaacggg cgaaaccttt
     1621 gattctgtca gtatccgcgg cattcgttta tacagcgaca gccgcatgtt gcctccgaca
     1681 ttagcgagtt ttgcgcctat cattcatggc gttgctaata ccaacgccaa agtcac
//
LOCUS       DADMJB010000304         1715 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.310, whole genome shotgun sequence.
ACCESSION   DADMJB010000304 DADMJB010000000
VERSION     DADMJB010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1715)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1715)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1715
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.310"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            122..1399
                     /locus_tag="JN078_004196"
     CDS             122..1399
                     /locus_tag="JN078_004196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9043159.1"
                     /translation="MNKIKNYRWHMIALVCFITVINYLDRTALGIAAPTIMETTGITK
                     EQYSWIVSAFQLAYTLGQPVMGFFIDTVGLKLSFAICAAIWGLATMGHALTGTWSGLA
                     FMRALMGFSEASAIPAGVKTASTWFPAKERGVATGVFNMGTSLGAMLAPPLIAWCIMF
                     HSWQFAFIVSGSLALLAALFWFFCYKDPKDAKRLSDEERHYIESGQEQHLKTDKKEKT
                     SIKHILSQRNFWGIGIARFLADPAWGTINFWVPIFFVETLHFSLKEIAMFVWLPFLLG
                     DLGCLASGFVAKFFHDRGVSLINSRRITFTIAAVIMMTIGLVSIVENPYIAVLLISIG
                     AFSHQCLSTVAATLGGDLFKKDEVATAVGMAGACAWSGQLIFNLFIGAFVHIIGFAPF
                     FIALAFFDIIGAIALWTLIKVKDEEPQVQLATH"
BASE COUNT          447 a          368 c          372 g          528 t
ORIGIN      
        1 ttttaaaggg agaaatttac acacaataat tttcaatatt tcctctgtac ctgattttta
       61 ttacctatta cacggaaata ccaacaacca gggtttatta atataattaa aaggtttaaa
      121 catgaataaa ataaagaatt accggtggca tatgattgcc ctcgtatgct ttatcactgt
      181 aatcaattat ctggacagaa cggcgttagg tattgcggct ccaacgatta tggagacaac
      241 cggaataact aaagagcaat attcatggat tgtcagtgca ttccagttgg cctatacatt
      301 agggcaaccg gtaatgggct tctttattga taccgtgggt ctgaagttaa gttttgcgat
      361 atgtgccgca atttggggcc tggcgacaat gggccatgca ctaaccggaa cgtggtctgg
      421 tctggcattt atgcgcgccc tgatgggttt cagcgaagcg tcggcaattc cggcgggtgt
      481 aaaaaccgca tcaacatggt tcccggcaaa agagcgtggc gtggcgacag gtgttttcaa
      541 tatgggcacc tcactcggcg cgatgcttgc tccaccgttg attgcctggt gcattatgtt
      601 tcatagctgg caatttgcgt ttattgtttc aggtagtctt gctttgctcg cggctttatt
      661 ttggttcttt tgttataaag atccgaaaga tgccaaacgc ctttctgatg aagagcgcca
      721 ctatattgaa tcagggcaag aacagcatct taaaacagat aagaaagaaa aaacgtcaat
      781 caagcatatc ctcagccaac gtaatttctg ggggattggc atcgcgcgtt ttctcgcaga
      841 cccggcatgg ggaaccatta acttctgggt gccgattttc ttcgtcgaaa cgctgcattt
      901 tagcctgaaa gaaattgcca tgttcgtctg gctgcctttc ctgctgggcg atctcggctg
      961 tttagccagt ggttttgtcg cgaagttctt ccacgatcgc ggcgtgagtt taattaactc
     1021 acgaagaatt accttcacta ttgcagccgt cattatgatg acgattggcc tggtgagtat
     1081 tgtcgaaaat ccctacattg ccgtattact gattagtatt ggcgcgttct cgcatcaatg
     1141 tctttctact gtagcagcaa ctctgggtgg cgatctgttc aaaaaagacg aagtagctac
     1201 cgcagtgggt atggcaggag cctgtgcgtg gagcggtcag ttgattttca acctgttcat
     1261 cggggcattc gttcacatta tcggcttcgc gccgttcttt attgccctgg ctttctttga
     1321 cattattggt gctattgcgt tgtggacgct tatcaaagtt aaagatgaag aaccacaagt
     1381 acagttagct acccactaat tattttaaat aaaaacgcta taattgaggt tatggcgttt
     1441 ttaaagaagc ttgagttatc gaaccccgct taccaacgcg ttgtcagtca tctcccccct
     1501 ccctggtgca tcgttatatc cgtgatgagc gatttttgat attaatatct ttcaccatcc
     1561 gctattttca ccacttcaga aaacaaactt atttttatta atatcaattc tttttctttg
     1621 aacattcaac tgcgatattt gtaaaaacat taaacaggca acaataaaat gacattacca
     1681 acaactattt attcattccc cgcatattta cctcg
//
LOCUS       DADMJB010000305         1667 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.311, whole genome shotgun sequence.
ACCESSION   DADMJB010000305 DADMJB010000000
VERSION     DADMJB010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1667)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1667)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1667
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.311"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            13..1268
                     /locus_tag="JN078_004197"
                     /pseudo
     CDS             13..1268
                     /locus_tag="JN078_004197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000535347.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YccE family protein"
     gene            1561..>1667
                     /locus_tag="JN078_004198"
     CDS             1561..>1667
                     /locus_tag="JN078_004198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine acid phosphatase"
                     /protein_id="HAY9043160.1"
                     /translation="MNKTLIAAAVAGIVLLASNAQAQTVPEGYQLQQVL"
BASE COUNT          546 a          263 c          342 g          516 t
ORIGIN      
        1 tagacgctat atatgggtag taatatacat ggaattagtt gcactgcaaa taattatttg
       61 aaacaggcct ggaacgatat aaaaaatgag tacgaaaaaa atcaaacata ttcaatcacg
      121 ctttttgaaa acacactggt gtgttttatg cggttataca atgaactcag acgtaaagta
      181 aatgaagagg atactccatg tctggaatgt gaatcactag aaaaagaatt tgaggaaatg
      241 cagaatgata atgatctatc attatttatg agaacattgc gtactaatga tacacaaatt
      301 tattcagggt ttcaggaggt attacatata ctatacaata tgttcaaaat gttgatattg
      361 ttagagtgtc cttgccgggc agaggttcag agtctatcac agattttaaa ggttattatt
      421 ggtatggctt tatggaatat attgaaaaca ttactgcgtg tgatgatgtt ttttctgagt
      481 attgtttaga tgatgaaaat atgagtatcc agccagaaca gataaatacg ccgggaatat
      541 ctgatttaga tactggtatt gatttgtctg gcatatcttt tattcagagt gaaattaata
      601 aaacatatgg attaaaatac gctccagtag atggcgatgg atattgtctg ttaagagcca
      661 tactggtttt aaaagaacat gagtattcat gggcgctggg cggccataag acgcaaaagc
      721 aagtatacga agagtttatt aaaattgttg ataaacaaac gatcgaggct cttgttgata
      781 cggcattcta taatctcagg gaagatgtaa agacgttatt tggcgttaat ctacaatctg
      841 acaacaaaat tcaggggcag ggtggttttt tatcatggag ttttttgtct tttaaaaaag
      901 aatttattga tagttgcttg aatgacaaaa aatgcatact gcatttaccc gaatttatat
      961 ttaatgataa caaggtacgc cttgttttag acaccgaccc agagcagagg gttaatgagg
     1021 tgaaaaattt cctcactgct ctttcagata gcatttgctc attatttatt gttaatagta
     1081 atatggcatc aatctccttg gggaatgaat ccttttcaac agatgacgac cttgagtatg
     1141 gttatttaat aaacactggc aatcattatg atgtttacct ccctcctgaa ctttttgctc
     1201 aggcttataa gttaaaaaat aaggaaatga atgcgcaact cgactattta aatcgttatg
     1261 caatttaatg gcaaaggcat atgctaaaaa ccattgttat tagtctcaca cttttttatt
     1321 ggtaaatatt gtctctgtat tggtaacgcc gcagatattc tgtttagcca caggtgcaat
     1381 tatcagcggc gtacgcgagg caggggctaa tcaggcatag tttgcgtcaa accttgcctg
     1441 tttttgaaga tgtatataga aaaacaggcg ttcaacaagc cattttgcga acctgttccc
     1501 ggaaaaaagt catatttctg tcacactctt tagtgattga taacaaaaga ggtgccagga
     1561 atgaacaaaa cgctaatcgc cgcagctgtg gcagggatag ttttactcgc ttcaaacgct
     1621 caggcacaaa ccgtaccgga aggctatcag ctacagcaag tgctcat
//
LOCUS       DADMJB010000306         1648 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.312, whole genome shotgun sequence.
ACCESSION   DADMJB010000306 DADMJB010000000
VERSION     DADMJB010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1648
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.312"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..950)
                     /gene="corA"
                     /locus_tag="JN078_004199"
     CDS             complement(<1..950)
                     /gene="corA"
                     /locus_tag="JN078_004199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000947142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HAY9043161.1"
                     /translation="MLSAFQLENNRLTRLEVEESQPLVNAVWIDLVEPDDDERLRVQS
                     ELGQSLATRPELEDIEASARFFEDDDGLHIHSFFFFEDAEDHAGNSTVAFTIRDGRLF
                     TLRERELPAFRLYRMRARSQSMVDGNAYELLLDLFETKIEQLADEIENIYSDLEQLSR
                     VIMEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKARLPGGQLEQARE
                     ILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSY
                     GMNFEFMPELKWSFGYPGAIIFMILAGLAPYLYFKRKNWL"
     gene            1320..>1648
                     /locus_tag="JN078_004200"
     CDS             1320..>1648
                     /locus_tag="JN078_004200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043162.1"
                     /translation="MAHRLLIGKGMITLNLKRIFLTLTLLPLFSVAADDCALSDPTLT
                     VQAYTVNPQTERVKMYWQKANGEAWGTLHALLADINSQGQVQMAMNGGIYDESYAPLG
                     LYIENGQ"
BASE COUNT          426 a          427 c          412 g          383 t
ORIGIN      
        1 tacaaccagt tcttccgctt aaagtacaga tacggtgcca ggcccgcgag gatcataaag
       61 ataatcgcgc cagggtagcc gaagctccac ttcagttctg gcataaactc aaagttcatg
      121 ccatagctgg aagcaacgag cgtcggcggc aggaatacca cggataccac cgagaagatt
      181 ttgatgatgc ggttctgctc gatgttgata aaacccatcg ccgcctgcat caggaagttc
      241 accttctgga acagagattc gttatgcggc agcagggatt cgatatctcg caggatttca
      301 cgcgcctgct ccagttgtcc acccggtaag cgtgctttac gtaccaggaa gttgagcgcg
      361 cgctgggtat ccatcagaca caggcgtact ttccagccga tatcttccag ttccgccagc
      421 gtggagagcg cctcatcgta ctcatcgccc tgatgccctt ccataatcac ccggctcaac
      481 tgctccaggt cgctatagat attttcaatt tcatctgcca actgttcgat tttggtttcg
      541 aacagatcca gcagcagctc gtaggcgtta ccgtctacca tcgactggct acgggcacgc
      601 atacgataca gacgaaaagc gggcagttca cgctcacgca gagtaaacag acgaccatca
      661 cggatggtaa atgccacagt ggagttaccg gcgtgatctt ccgcatcttc aaagaagaag
      721 aaggagtgaa tatgcaggcc gtcgtcgtct tcaaagaaac gtgccgatgc ttcgatgtct
      781 tccagttccg ggcgggttgc caggctctgg ccaagttcag attgtacacg cagtcgctcg
      841 tcgtcgtccg gttcgacaag atcaatccat actgcattta caaggggttg tgactcttcg
      901 acttccagcc gggtcagtcg gttattttcc agttgaaatg cgctcagcat gaccgggact
      961 cccaatgctt aaaatatcgg acagttcggt gggcacacag aaacaaattg ggtttcagac
     1021 cattaaacag cctgactcag cgcgacggga aaaattgagg tcgctgacaa ccgctaaggc
     1081 tatcagcaaa aagggatagc cttaggagtt gatcctggat gacaggatag tgagccagta
     1141 tctactgggt gtgtccaagg cgaatgtcct cttagaatga tcgtgcgcgc atgttacgcc
     1201 agcaaaattt tgccgtcaac acgcaacaga acaccacaga acaatagttg aacttcgcgc
     1261 tttttggtac tcctcaaggt cgctaacagg ataaaaaaat cccacatcca ggacctataa
     1321 tggcgcatcg gctactcatt ggtaaaggaa tgatcacctt gaatctcaaa cggatttttc
     1381 tcaccctcac cttacttccc ttgttttctg ttgccgctga tgattgcgca ctctcagatc
     1441 cgacgctgac cgtacaggcg tataccgtta atcctcaaac agagcgggtg aaaatgtact
     1501 ggcaaaaagc caatggcgaa gcgtggggaa cgttacatgc tctgctggcg gatattaata
     1561 gtcagggtca ggtgcagatg gcgatgaacg gcggcatcta tgatgaaagc tatgcgccgc
     1621 tcggtttgta catcgaaaac ggtcagca
//
LOCUS       DADMJB010000307         1621 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.313, whole genome shotgun sequence.
ACCESSION   DADMJB010000307 DADMJB010000000
VERSION     DADMJB010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1621
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.313"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(1..1577)
                     /locus_tag="JN078_004201"
                     /pseudo
     CDS             complement(1..1577)
                     /locus_tag="JN078_004201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001433765.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          420 a          411 c          349 g          441 t
ORIGIN      
        1 caaaaaggca aacagatccg aagcgggata atctttttgg ggagaattgt tccagttagc
       61 aatatatccc gacagggggt tatacacctt agggttcatt tcaaaaggca atagcccttt
      121 ccagtcccat tttcccgtac caggaacggg taatcgcgga tcatggcctg attgacgatc
      181 tggataagca ccagtatgaa cataaccaat attgccgttt acatcagcat agtaccagtt
      241 gatggtcagt gcttgtttcg ctactcctgc caatttttgg ccttcatctg atgagtccag
      301 gccagcaaag acgccacctc tttaccatcc catgcgcggg atttagcgta agccgtttgt
      361 gtcgtctggt cagtttggag aatgttgcca tgcaccgtac gccagacagt aaaggtctct
      421 gcctgaccat ttttcaccgt aatggtttcc tcacggctta acattttcac ccacttacaa
      481 ttatgtaagt agtagcctgg tttctctgcc gacagccgtt cagcaaaaat atcgacatca
      541 tcgccgaaac ctgccgttga tccccaggaa atcacaccat tatgaccaaa aaccagccca
      601 ggataggcaa atggtgtatt gccagtgaca tcataaccag caccgtgcag accaatacca
      661 taagtatacg caggcgcata ccagccaaac tgcggaccat ttaccatgat tgctttcgca
      721 tcctgggctt tgcttttgcc gatcacccac atattgctgg tcgttggata ccccgccaga
      781 ccattggcac caccctgtgc aaattgtgca gcaatagttt cccggttctt ccctgctgtt
      841 aacgccagca gtgcgccatc cgcccctttt gctggtcggt caagcattgg tgcaggtaaa
      901 tcgtagcgtg gcaacagagc tgctgtttgc gagttttgct gattaaattt aagtgggtag
      961 ctactctctt gtacggcaat agtggttggc gctgatgggt ttaccagcca tttcaactga
     1021 ttaaataccg ccatgccttg tgatacacca tatttatctt ttaaagccgt tagcagtgcc
     1081 agattatcaa tttcgctagt gctatcagag aagcggtttg ccatggtgcc cacaaatatc
     1141 atcgcgacat caaacggttc ccagcgctta ggagtaaagc caaatgtatt aaactgtttt
     1201 ggtaagagcg tctctggatt ggtatttacc ttatcaatcc aggcattcat tccatcagcg
     1261 tagccttgca gaatggacat atcctctggg gaaagggcat caatttgcgc ccggatagca
     1321 tccggccagt agttacgacg gatatcttta tcaaatttca caaaatcttt gccaagcact
     1381 tccgcgacag tcccttgagt actgcgacgt gccatttcca tctgaaaaag gcgatcttgt
     1441 gctactacat agccatagcc ataaaatagg tgccatgtat cattggcata aatatgcggc
     1501 atgccgtatt catcgcgaac aatctttatc tcacttgacg actgctcagc cagtgcaggt
     1561 aagctccaat aatacatcag ggaagcagta acacagttca cgatcatacg atttctattt
     1621 t
//
LOCUS       DADMJB010000308         1583 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.314, whole genome shotgun sequence.
ACCESSION   DADMJB010000308 DADMJB010000000
VERSION     DADMJB010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1583)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1583)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.314"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(70..492)
                     /locus_tag="JN078_004202"
     CDS             complement(70..492)
                     /locus_tag="JN078_004202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043163.1"
                     /translation="MKIRHEHIESVLLALAAEKGQAWVANAITEEYLRQGGGELPLVP
                     GKDWNNQQNIYHRWLKGETKAQREKIQKLIPAVLAILPRELRHRLCIFDTLERRALLA
                     AQEALSTAIDAHDDAVQAVYRKAHFSGGGSSDDSVVVH"
     gene            complement(476..703)
                     /locus_tag="JN078_004203"
     CDS             complement(476..703)
                     /locus_tag="JN078_004203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HAY9043164.1"
                     /translation="MLKIDAIAFFGSKTKLANAAGVRLASIAAWGELVPEGRAMRLQE
                     ASGGELQYDPKVYDEYRKAKRPGKVIHENQA"
     gene            780..1187
                     /locus_tag="JN078_004204"
     CDS             780..1187
                     /locus_tag="JN078_004204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAY9043165.1"
                     /translation="MKNETFGARLLHRRKKLKLSQAALGKLVKVAHVTISQWERDETQ
                     PAGKRLFALSQALQCSPTWLLFGDEDKQPGEPIPDNQPAILTEDQKELLQLFDALPES
                     EQKALLSEMRARVENFNKLFEELLKARKRSANK"
     gene            1390..1542
                     /locus_tag="JN078_004205"
     CDS             1390..1542
                     /locus_tag="JN078_004205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706802.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1391 domain-containing protein"
                     /protein_id="HAY9043166.1"
                     /translation="MDTIDLGNNESLVCGVFPNQDGTFTAMTYTKSKTFKTEAGARRW
                     LAKNTS"
BASE COUNT          445 a          414 c          327 g          397 t
ORIGIN      
        1 ccgaaccttc ctccggatat aatctgtgat tccccaatca acagaaccag aggaggttcg
       61 gcataaacat caatgcacaa cgacagaatc gtcggacgac ccaccaccgc tgaaatgtgc
      121 tttccggtaa acggcctgaa ctgcgtcatc atgcgcatca attgccgtac tcaacgcttc
      181 ctgcgccgcc agtaatgcac ggcgttccag ggtatcgaag atacagagtc ggtgacgcag
      241 ctcacgcgga agaattgcca gaaccgcagg gatcagtttc tgaattttct ccctttgcgc
      301 tttcgtttca cctttcaacc aacggtgata gatattctgc tgattgttcc agtccttgcc
      361 tggtaccaga ggcaattcgc cgcccccctg ccgcagatat tcttcagtaa ttgcgttagc
      421 gacccacgcc tgcccttttt cggctgccag ggctaacagc actgattcga tgtgctcatg
      481 cctgattttc atgaatcacc ttcccaggtc gttttgcctt acgatattcg tcataaactt
      541 tggggtcgta ctgaagttcc ccgccagatg cctcttgcag gcgcatcgcg cggccttcag
      601 gaaccagttc cccccatgca gcaatgcttg ccagcctaac tcctgcggca ttggcaagct
      661 ttgttttgct gccaaaaaac gctatagcat caattttcaa catatcgagc tccttagatt
      721 ttcctaagga aactagatcg tagagaaacc taagtcaaga aagattagaa ttccctaata
      781 tgaaaaacga aaccttcggt gctcgcctct tacataggcg taaaaaatta aaactgtctc
      841 aggccgcatt aggtaagctg gtcaaagtgg ctcacgtaac aatttctcaa tgggaaagag
      901 atgaaacaca gccggcgggg aaaagattat tcgcactgag ccaagcgctt cagtgctcac
      961 cgacttggct tctttttggg gatgaagata aacaaccagg cgaaccgatc ccggataatc
     1021 agccagccat tctgacagaa gatcaaaaag agttacttca actgttcgac gcactgcctg
     1081 agtcagagca aaaggccctg ttgtcagaga tgcgtgctcg agttgaaaat ttcaacaaac
     1141 tttttgaaga actactcaaa gctcgcaaaa gaagcgcaaa caaataatcc ccttttttct
     1201 ccacaccctg taataaaaag cacaaacttt caaacacttg tgttttttac atcaaaaaaa
     1261 cttaggtttt tatacataaa atcttgactc cacgtcttag gttattctaa atttcattca
     1321 tcaagacacc gcacggtgtt ctcagcaaac agttccacta ccccggcgtt aaggggaaat
     1381 gaggtcagca tggatactat cgatcttggc aacaacgaat ccctagtgtg tggcgtgttt
     1441 cccaatcagg acggcacatt caccgccatg acgtatacca aaagcaaaac gtttaaaacc
     1501 gaagctggcg cacgtcgctg gcttgccaaa aataccagct aatccattta ttggattaat
     1561 tcaatattct cgctgtagag gta
//
LOCUS       DADMJB010000309         1573 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.315, whole genome shotgun sequence.
ACCESSION   DADMJB010000309 DADMJB010000000
VERSION     DADMJB010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1573)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1573)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.315"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..90
                     /gene="yoaK"
                     /locus_tag="JN078_004206"
     CDS             <1..90
                     /gene="yoaK"
                     /locus_tag="JN078_004206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoaK family small membrane protein"
                     /protein_id="HAY9043167.1"
                     /translation="GIIFPVVIFITAVVFLAWFFIGGYAAPGA"
     gene            93..167
                     /gene="yoaJ"
                     /locus_tag="JN078_004207"
     CDS             93..167
                     /gene="yoaJ"
                     /locus_tag="JN078_004207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YoaJ"
                     /protein_id="HAY9043168.1"
                     /translation="MKKTTIIMMGVAIIVVLGTEQGWW"
     gene            complement(226..474)
                     /locus_tag="JN078_004208"
     CDS             complement(226..474)
                     /locus_tag="JN078_004208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HAY9043169.1"
                     /translation="MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTILLGIVGAVVGG
                     WISTLFGFGKVDGFNFGSFVVAVIGAIVVLFIYRKIKS"
     gene            complement(622..804)
                     /locus_tag="JN078_004209"
     CDS             complement(622..804)
                     /locus_tag="JN078_004209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1869 domain-containing protein"
                     /protein_id="HAY9043170.1"
                     /translation="MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVN
                     TVRSYDTENEHDVCGW"
     gene            complement(808..1168)
                     /gene="yeaR"
                     /locus_tag="JN078_004210"
                     /pseudo
     CDS             complement(808..1168)
                     /gene="yeaR"
                     /locus_tag="JN078_004210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310533.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1971 domain-containing protein"
     gene            complement(1341..>1573)
                     /locus_tag="JN078_004211"
     CDS             complement(1341..>1573)
                     /locus_tag="JN078_004211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HAY9043171.1"
                     /translation="FFVQFIDVNAPHTGISFFILATTLELVSFCYLSFLIISGAFVTQ
                     YIRTKKKLAKVGNSLIGLMFVGFAARLATLQS"
BASE COUNT          433 a          374 c          350 g          416 t
ORIGIN      
        1 ggtattattt ttccggttgt aatctttatt acagcggtcg tatttttagc atggtttttt
       61 attggcggct atgctgcccc gggggcataa agatgaaaaa aacaacgatt attatgatgg
      121 gtgtggcgat tattgtcgta ctcggcactg agcagggatg gtggtaacgt cacctctaaa
      181 aaatagcaaa ggctgcctgt gtgcagcctt tgtgcaattt aagcgttaac ttttaatctt
      241 cctgtagata aatagcacga caatcgcacc aataacggca accacgaagc tgccaaaatt
      301 gaagccatcg actttaccaa agccaaacag cgtgctgatc catccgccga ctacggcacc
      361 gactatcccc agcaggatag tcataaagaa tccaccacca tctttacctg gcatgatcca
      421 cttcgccaga ataccggcaa taagcccaaa aataatccat gacagaatgc ccattgtttc
      481 ctcacttatc tgttttgcat tagcgggtta gtcgctgata aaaagcatag cacaacatcg
      541 ggagggcaag atttgtgacg agcatcacgg aggatttttt tgcgatggcg cagaaattgc
      601 gccatcaacg atcagtgata attaccaacc acaaacatca tgttcgtttt ccgtgtcata
      661 agaacgcacg gtattcacca gatcttttat cacttcagcc gccacttctg gcaccagcaa
      721 agtcatcggc gtctctgttt cataatcgac agaaacgcca ttactgttat tggtgacggt
      781 cacggtatac gttgctttgc ccatgattca tttcccgtta tgaatgactt tccgttgttg
      841 cgcaccttcc atcaggactt caggagccac gaagaagtca atgttgacat aagtatcgtc
      901 agtcatggct tcaatgttgt gccacttttc tggagggaac accgcaaact gccccgcttc
      961 gataaggatc acctgatcag gctctgcact gtgttcatca gcgtagccga gatatttgac
     1021 cgccccatgc ataacggaaa ggcgtgggta acccccctgg cgcgttcctt tatcaagatg
     1081 acgttcgaat tattccggca ggcgcagttt gtttattcca gaaaggcgtt gagcgcgtat
     1141 gaatataatt ctgtgggatt tgcagcatcc ttttccctcc ttcggtgaat gcgctgaaaa
     1201 cggtttattc cagccgtttc agggtacgcc tgataatttg cattttaaat accatttatt
     1261 ggttactttt tagcaccata tcagagaaaa atcagggagg attacaagtg ggaagcccgc
     1321 gacaacgcgg gctgaatgta tcaggattgc agcgtcgcca gtcgggcggc gaaacccacg
     1381 aacatcaaac caatcagtga gttgccaact ttagccagtt tctttttggt acgtatgtac
     1441 tgcgtgacaa aagcaccaga aataatcagg aagctcaaat agcagaaact caccagttcc
     1501 agcgtcgtcg ccagaataaa gaatgaaatt cccgtatgtg gggcattaac atcgataaac
     1561 tgtacgaaaa acg
//
LOCUS       DADMJB010000310         1557 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.316, whole genome shotgun sequence.
ACCESSION   DADMJB010000310 DADMJB010000000
VERSION     DADMJB010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1557
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.316"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(38..316)
                     /locus_tag="JN078_004212"
     CDS             complement(38..316)
                     /locus_tag="JN078_004212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707474.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1161 domain-containing protein"
                     /protein_id="HAY9043172.1"
                     /translation="MKLSTCCAALLLALASPAVLAAPGSCERIQSDISQRIINNGVPE
                     SSFTLSIVPNDQVDQPDSQVVGHCANDTHKILYTRTTSANVSAPAQST"
     gene            424..1134
                     /locus_tag="JN078_004213"
     CDS             424..1134
                     /locus_tag="JN078_004213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416102.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnfC family lipoprotein"
                     /protein_id="HAY9043173.1"
                     /translation="MKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSDEFDFDPLRG
                     PVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELLDLENNTVVALVLDANYYRDAET
                     LEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKS
                     NDKTLSVSATPSTDPIKKLDYTAVTLLNNQRVGNVKQSCEYDSHANPVDCQLIIVDEG
                     VKPAVERVYTIKNTIDYY"
     gene            complement(1137..>1557)
                     /gene="speG"
                     /locus_tag="JN078_004214"
     CDS             complement(1137..>1557)
                     /gene="speG"
                     /locus_tag="JN078_004214"
                     /EC_number="2.3.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="spermidine N1-acetyltransferase"
                     /protein_id="HAY9043174.1"
                     /translation="TTSHIHDQSERRFVVECDGEKAGLVELVEINHVHRRAEFQIIIS
                     PEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFTVEGELMHE
                     FFINGQYRNAIRMCIFQHQYLAEHKTPGQTLLKPTAQ"
BASE COUNT          426 a          338 c          383 g          410 t
ORIGIN      
        1 cgataatgta ttactgcggt tcggcaggcg cgccatccta ggtagactgc gcgggagcag
       61 agacgttagc gctggtggtg cgggtgtaga gaattttatg cgtatcatta gcacaatgcc
      121 cgacgacctg ggaatcaggc tgatcaacct ggtcattggg tacaatactt aatgtgaagc
      181 tgctttcggg tacgccatta ttgataatgc gctgtgatat atcgctctgt atgcgctcac
      241 aggatcccgg cgcggcgagt accgcgggtg aggcgagggc gagcagaagc gcggcacagc
      301 aggttgagag tttcatcata agctccttac gcgaagataa cttctttaag catagcattt
      361 aacgtgtaaa gtactgtatt tgctactatg attgagaatc atctctactc tctggtgact
      421 gttgtgaaat acaaattact accatgctta ctcgcgatat tcctcacagg atgtgaccgc
      481 acagaggtaa cactttcatt tacccctgag atggccagtt tctctgatga attcgatttt
      541 gatccgctgc gtggtccggt aaaagatttc actcagacat taatggatga gcaaggtgaa
      601 gtgacgaaac gtgtttctgg gactttgtcg gaagaaggct gttttgattc actcgaatta
      661 ctggatctgg aaaataatac cgtggtcgct ctggtactgg acgccaatta ttaccgtgat
      721 gccgagacgc tggagaagag agtacgttta cagggaaaat gccagctagc agaattacct
      781 tctgccgggg tgagttggga aaccgatgat aatggcttcg tgattaaagc cagcagcaaa
      841 caaatgcaga tggaatatcg ctatgatgat cagggttatc cactgggtaa aaccacgaaa
      901 agtaacgaca aaacattatc tgtcagcgcc acgccatcaa cggacccgat caaaaaatta
      961 gattacacag cggttacttt actgaataat caacgagttg gtaatgtaaa acagagctgt
     1021 gaatatgaca gtcacgccaa tccggtggac tgtcagctga tcattgttga tgaaggagta
     1081 aaacccgccg tcgaacgggt ttacaccatc aaaaatacga tcgattatta ttaatgctat
     1141 tgtgcggtcg gcttcaggag agtctgaccc ggtgttttgt gctctgccag atactgatgc
     1201 tggaatatac acatgcgaat ggcattacga tattgaccat taataaaaaa ctcatgcatc
     1261 aattcacctt caaccgtaaa gccaagcttg cggtaaatgt gaatcgcttt ttcattctct
     1321 ttatcgacga tcagatacag cttatagaga ttgagaacgg tgaagccata gtccattgct
     1381 aatttggcgg cacgggttgc cagacctttc ccctgatact ccggggagat aattatctga
     1441 aattctgccc ggcgatgtac atggttaatt tccaccagct ccaccagacc ggctttttcg
     1501 ccgtcacatt ccaccacaaa gcgtcgttcg ctctgatcgt gaatatgtga agtggtc
//
LOCUS       DADMJB010000311         1522 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.317, whole genome shotgun sequence.
ACCESSION   DADMJB010000311 DADMJB010000000
VERSION     DADMJB010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1522
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.317"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..1189)
                     /locus_tag="JN078_004215"
     CDS             complement(<1..1189)
                     /locus_tag="JN078_004215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011379332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SopA family protein"
                     /protein_id="HAY9043175.1"
                     /translation="MLREVSISNDTISVKFYRNEKIECACNFLMDKDSQGYIDLSDFD
                     VTNCHFKGDVISKVSFLSSNLQHVTFECKEIENCNFTKATVDNVIFKCRRLHNVIFLK
                     TSGECVDFSQDILDTVDFSQSQLGHSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKE
                     ISFIKSNLTAVMFDHVRMSTGNFKDCITEQLELTIDYSDIFGNEDLDGYINNIIKMID
                     TLPDNAMILKSVLAVKLVMQLKILNIVNKNFIENMKKTFSHCPYIKDPIIRSYIHSGE
                     DNKFDDFMRQHRFSKVDFDTQQMIHFINRFNMNKGLIDKNNNFFIQLIDQALRSTDDM
                     IKANAWYLYKEWIRSDDVSPIFIETEEKLRTFNTNKLTRNDNIFILFSSVDDGPVMVV
                     SSQR"
     gene            complement(1192..1386)
                     /locus_tag="JN078_004216"
     CDS             complement(1192..1386)
                     /locus_tag="JN078_004216"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043176.1"
                     /translation="MIGHITNSGGNNSLMKHDVVQGNNIVDLDLLRNFNGVTGLNRDN
                     FIYISDIFLNIKQRNEKIMQ"
BASE COUNT          521 a          266 c          224 g          511 t
ORIGIN      
        1 agcgctggga gcttaccacc ataacaggcc catcatcgac agaggagaac aggataaata
       61 tattatcgtt tcgtgttaat ttattagtgt taaaggttct taacttttct tcagtttcta
      121 taaatatagg tgaaacatca tcactacgaa tccactcttt ataaagatac caggcatttg
      181 ctttgatcat atcatccgtt gatcgtaagg cctgatcgat aagttggata aaaaaattgt
      241 tatttttatc aatcagccct ttattcatat taaacctgtt aataaaatgg atcatctgtt
      301 gggtatcgaa atccaccttg ctgaatcgat gttgacgcat aaaatcatcg aacttgttat
      361 cttcaccaga atggatataa ctgcgtataa ttggatcttt tatataagga caatggctaa
      421 atgttttctt catattctca ataaagtttt tattaacaat attaagaatt tttaattgca
      481 taaccagttt tactgccaga acggatttca atatcattgc attatctggc aatgtatcaa
      541 tcatttttat aatgttattg atataaccat cgagatcttc attcccaaat atatctgaat
      601 aatcaatagt taattccaat tgttctgtaa tgcaatcttt aaaattccct gtcgacattc
      661 gcacatgatc aaacataaca gctgtcaaat tcgatttaat aaatgatatt tctttggcag
      721 acagaaactc tgctctggtg aagtgcgaag cgtaaagata acaattatcg aagtttgaat
      781 ttctaatctg acattcgcga aaattactat gaccaagttg actctgcgag aagtcaactg
      841 tatcaagaat atcttggcta aaatcaacac attcgccact cgttttgaga aaaatcacat
      901 tgtgtaaacg tcgacattta aatatgacat tatcaactgt tgccttagta aaattgcaat
      961 tctcaatttc tttacattcg aaagttacat gttgtagatt tgatgataaa aaagacacct
     1021 tagaaataac gtcaccttta aaatgacaat ttgttacatc aaaatcagac aggtcgatat
     1081 acccctgcga atctttatcc atcagaaaat tacaagcgca ttctattttt tcatttctgt
     1141 agaattttac acttatagta tcattactaa ttgagacttc acgtaacata tttattgcat
     1201 gattttttcg ttccgttgtt ttatatttaa aaatatatca ctgatataaa taaagttatc
     1261 tctgtttaaa cctgtcaccc cattgaaatt acgtagtaaa tcaagatcta ctatattatt
     1321 tccttgaacc acatcatgtt tcatcaaaga gttattgcca ccagaatttg tgatatgacc
     1381 tatcataaaa cctctgtaat acagaaataa aataacctgg aaaagtagcc tgagcgtcca
     1441 gacactaccg gcgaaaggaa aagaatctct gataaggcat tgagataatg gacattctta
     1501 gtgaagaaga agtgaagtac ta
//
LOCUS       DADMJB010000312         1496 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.318, whole genome shotgun sequence.
ACCESSION   DADMJB010000312 DADMJB010000000
VERSION     DADMJB010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1496
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.318"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..1494
                     /gene="pdeB"
                     /locus_tag="JN078_004217"
     CDS             <1..1494
                     /gene="pdeB"
                     /locus_tag="JN078_004217"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308537.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase
                     PdeB"
                     /protein_id="HAY9043177.1"
                     /translation="LPVGLSIWLAHQQVETSFIEELDTYSSRVAIRANKVATQGKDAL
                     QELERWQGAACSEAHLMEMRRVSYSYRYIQEVVYIDNNVPQCSSLEHESPPDTFPEPG
                     KISKDGYRVWLTSHNDLGIIRYMVAMGTAHYVVMIDPASFIDVIPYSSWQIDAAIIGN
                     AHNVVITSSDEIAQGIITRLQKTPGEHIENNGIIYDILPFPEMNISIITWASTKMLQK
                     GWHRQVFIWLPLGLVIGLLAAMFVLRILRRIQSPHHRLQDAIENRDICVHYQPIVSLA
                     NGKIVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSEPLTLLIIRSVFEDMGDWLRQH
                     PQQHISINLESTVLTSEKIPQLLREMINHYQVNPRQIALELTEREFADPKTSAPIISR
                     YREAGHEIYLDDFGTGYSSLSYLQDLDVDILKIDKSFVDALEYKNVTPHIIEMAKTLK
                     LKMVAEGIETSKQEEWLRQHGVHYGQGWLYSKALPKEDFLRWAEQHL"
BASE COUNT          396 a          351 c          367 g          382 t
ORIGIN      
        1 ctgcctgtcg gcttaagcat ctggctggcc catcagcagg tagaaacatc gtttattgaa
       61 gagctggata cctattcctc ccgcgtcgct attcgggcca ataaggtggc gacacaaggg
      121 aaagatgcgc tgcaagagct ggaaagatgg caaggcgctg cctgtagcga agcccatctc
      181 atggaaatgc gtcgggtatc ttacagttat cgctatattc aggaagtggt ttatatcgat
      241 aacaacgttc cccagtgttc gtctctggag catgaaagtc cgcccgatac cttccccgag
      301 ccaggtaaaa tttcgaaaga tggttatcgt gtctggttaa catcgcataa cgatttaggc
      361 attatccgtt acatggtcgc catgggaacg gcacattatg tcgtcatgat cgaccccgct
      421 tcctttattg atgtcattcc ctatagctca tggcaaattg atgccgccat tattggcaat
      481 gcccataacg ttgtcataac cagcagcgat gaaattgctc agggaattat taccaggcta
      541 caaaaaacac ccggtgagca tatcgaaaat aatggaatca tttacgatat cctgcccttc
      601 ccggagatga atatttcgat catcacctgg gcttcaacga aaatgttgca gaaaggctgg
      661 catcggcaag tctttatttg gttaccgctc gggttggtga ttggcctgct ggcagcgatg
      721 tttgtgctgc gtattttgcg ccgtatccag tcaccgcatc atcggctgca ggatgctatc
      781 gaaaatcgtg atatttgcgt gcactatcag ccgattgtct ccttagccaa tggcaaaatt
      841 gtcggtgctg aggcactggc gcgctggccg cagacagacg gtagttggtt gtcaccagat
      901 agttttattc cgctggcaca gcaaacaggc ctttctgagc cattgacgct actgattata
      961 agaagcgtct ttgaagatat gggcgactgg ctgcgtcagc atccacagca gcatatttcg
     1021 atcaatcttg aatccaccgt gctcacctcg gaaaaaatcc cgcaattgct gcgtgaaatg
     1081 atcaatcact atcaggttaa tcccagacag atcgcgcttg aactcactga acgcgagttt
     1141 gccgatccga aaaccagcgc cccgataatt tctcgctacc gggaggcggg ccatgaaatt
     1201 tatcttgatg attttggtac gggatattca agtttaagtt atttacagga tctggatgtc
     1261 gacattctga agatcgataa atctttcgtt gatgcgctgg aatataaaaa tgtcacgccg
     1321 catatcatcg aaatggcaaa aacactgaaa ctgaaaatgg tagcggaggg aatcgaaacc
     1381 agtaaacaag aagagtggct acgccagcat ggcgtgcact acggtcaggg ctggctctac
     1441 agcaaggcat taccgaaaga agatttctta cgctgggccg agcaacattt gtgaat
//
LOCUS       DADMJB010000313         1467 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.319, whole genome shotgun sequence.
ACCESSION   DADMJB010000313 DADMJB010000000
VERSION     DADMJB010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1467)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1467)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1467
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.319"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..183)
                     /locus_tag="JN078_004218"
     CDS             complement(<1..183)
                     /locus_tag="JN078_004218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043178.1"
                     /translation="MLEDTTIHNAITDKALASYFRSSGNLLEEESAVLGQAVTNLMWI
                     CPYISRHLLSLNPLQAR"
     gene            complement(212..484)
                     /locus_tag="JN078_004219"
     CDS             complement(212..484)
                     /locus_tag="JN078_004219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component-system connector protein YmgA"
                     /protein_id="HAY9043179.1"
                     /translation="MKTSDNERIKYEITGQVVLQILRMKINFSLQTLIKQLLVMKSAE
                     EDAFRRDLIDSIIRDFSNSDSGGPNRRTATADNKSMFNGKKINRIH"
     gene            complement(527..763)
                     /locus_tag="JN078_004220"
     CDS             complement(527..763)
                     /locus_tag="JN078_004220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component-system connector protein YcgZ"
                     /protein_id="HAY9043180.1"
                     /translation="MHQNSVTLDSAGAITRYFAKANWPTQQETLGEIVTEILKDGRNL
                     SRKSLCAKLLCRLEHATGEEEQKHYNALIGLLFE"
     gene            1077..>1467
                     /gene="bluF"
                     /locus_tag="JN078_004221"
     CDS             1077..>1467
                     /gene="bluF"
                     /locus_tag="JN078_004221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="blue light-responsive regulator BluF"
                     /protein_id="HAY9043181.1"
                     /translation="MLTTLIYRSHIRDDEPVKKIEEMVSIANRRNMQSDVTGILLFNG
                     SHFFQLLEGPEEQVKMIYRAICQDPRHYNIVELLCDYAPARRFGKAGMELFDLRLHER
                     DDVLQAVFDKGTSKFQLTYDDRALQFFR"
BASE COUNT          431 a          297 c          270 g          469 t
ORIGIN      
        1 gcgggcttgt aatgggttaa gtgataacag atgtctggaa atataggggc aaatccacat
       61 taaattggtg acagcctgcc ctaacactgc tgactcttct tctaacaaat tacccgaact
      121 gcgaaagtaa cttgctaacg ctttatcagt tattgcatta tgaattgtag tatcttcaag
      181 catggtaacc tctcatctta cttatgaaat tttaatgtat tctgtttatt ttcttaccat
      241 tgaacatact tttattgtca gctgtcgctg ttcttcggtt tggccctcct gaatcactat
      301 tgctaaaatc acgaattatg ctgtcaatta aatcgcgtcg gaaagcatct tcctcagccg
      361 atttcattac gagtaattgc ttaataagag tctgcaatga aaaatttatc ttcatgcgca
      421 gtatctggag caccacctgg ccagtaattt catattttat acgttcatta tcagatgtct
      481 tcataacgac ttcatagcta acctgttaaa taatcaggct gttgcattat tcaaaaagca
      541 acccaattag tgcattataa tgtttctgtt cctcttcccc agtcgcgtgt tccagtcggc
      601 aaagaagttt ggcacaaagc gactttcgac tcagattacg tccatctttc aaaatctcag
      661 tcacaatttc cccgagagtt tcctgctgag taggccagtt agcttttgca aagtaacgag
      721 tgattgctcc cgcagaatct aaagtcactg aattttgatg catgctacgc ctctgttaaa
      781 aatgttaatc aatgttaagt gaggtaacaa tagcaaactt gtacgaaata tgtgtacaga
      841 atgataaatt aattttttgc aattagtgcc aatacatata aaacaatgtg ttatgataaa
      901 acatattgca tcatttaact gacaatctat acgagatttt tcgccaacta gtgttcaact
      961 ttttccattt tttatcaatg taaagaaacg gttatgtttt ggtattaaaa gaaagacaca
     1021 agaagatatg tctgttaccg tcttactctc gcctcaccca ttaccctgga ttgttaatgc
     1081 ttaccaccct tatttatcgt agccatatac gtgacgacga acctgtcaaa aaaatcgaag
     1141 aaatggtttc gatagcaaat cgcaggaaca tgcagtctga cgtaacaggg atcttactgt
     1201 ttaatggttc tcattttttc cagcttctgg aaggtccgga agaacaggtt aaaatgatat
     1261 atcgggctat atgccaggat ccacggcact ataatattgt tgagctgctg tgcgattacg
     1321 cgcctgctcg ccgttttggc aaagcgggaa tggaattatt tgatttgcgc ctgcacgagc
     1381 gagatgacgt tttacaggcc gtattcgaca aaggcacatc aaaatttcag ctaacttatg
     1441 atgacagagc gctacaattt tttcgta
//
LOCUS       DADMJB010000314         1459 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.320, whole genome shotgun sequence.
ACCESSION   DADMJB010000314 DADMJB010000000
VERSION     DADMJB010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1459)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1459)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1459
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.320"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..730)
                     /gene="pdeC"
                     /locus_tag="JN078_004222"
     CDS             complement(<1..730)
                     /gene="pdeC"
                     /locus_tag="JN078_004222"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-di-GMP phosphodiesterase PdeC"
                     /protein_id="HAY9043182.1"
                     /translation="MSHRARHQLLALPGIIFLVLFPIILSLWIAFLWAKSEVNNQLRT
                     FAQLALDKSELVIRQADLVSDAAERYQGQVCTPAHQKRMLNIIRGYLYINELIYARDN
                     HFLCSSLIAPVNGYTIAPADYKREPNVSIYYYRDTPFFSGYKMTYMQRGNYVAVINPL
                     FWSEVMSDDPTLQWGVYDTVTKTFFSLSKEASAATFSPLIHLKDLTVQRNGYLYATVY
                     STKRPIAAIVATSYQRLITHFYNHL"
     gene            1160..1441
                     /locus_tag="JN078_004223"
     CDS             1160..1441
                     /locus_tag="JN078_004223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313069.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043183.1"
                     /translation="MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISS
                     GLGVVSACWFAMGLLGITMADITAIWHNIESVMIEEMNQTPPQWPMILT"
BASE COUNT          421 a          321 c          324 g          393 t
ORIGIN      
        1 taagatgatt ataaaaatgg gttataagac gttgatatga agtcgcaaca atggctgcaa
       61 ttgggcgttt tgtcgaataa actgtcgcat ataaatagcc atttctttgt acggttaaat
      121 ccttcaaatg aatcagcgga gaaaacgttg ctgccgaggc ctctttgctt aacgagaaaa
      181 aggttttcgt caccgtatca tacacacccc attgcaatgt cggatcatca gacatcactt
      241 cactccagaa gagagggttg ataaccgcca cataatttcc ccgctgcata taggtcattt
      301 tatagccaga gaaaaaaggc gtatcgcggt aataatagat agaaacgtta ggttcacgct
      361 tataatcggc cggtgcaatc gtatagccgt ttacaggcgc tatcagcgat gagcataaaa
      421 aatggttatc acgggcatag atcaattcat taatataaag atagccacga ataatattca
      481 acattcgctt ttgatgggct ggagtgcaaa cttgcccctg atagcgttca gctgcatcgc
      541 tcactaaatc tgcctggcga atgaccagct cggatttatc cagtgccagt tgagcaaagg
      601 ttcggagctg attattcact tctgattttg cccaaaggaa ggcaatccat agcgaaagaa
      661 tgatgggaaa gagaactaaa aagataatgc ccggcaacgc cagtaattgg tgtcgtgcac
      721 gatgactcat tgctatcaat ttcctgcctg tttatacccg gccattgtaa ggtgaaaacc
      781 ctgggtaccg acgtctttag ataaatctta cggtataaat agcacttttg cctgatttga
      841 aattgatacc tttctaatcg tcacctggat gaaaataatt cattgatatt caaaattaat
      901 ttcctacagg aatgcagagg cggcgggaag atatgccctt aatgccactg aaaaaccaca
      961 taatctgtac agcaataaaa gtcacggcct aatatggcta acaaacaatc aattgtgata
     1021 tatttcacaa aattaatgaa acaaacagag tgtttcattt ttgtgttctg caagccccgc
     1081 gatagccaga gtgtaccacg cctcccgtga acaacgccgc gctgtccagg gcatcggctc
     1141 ttttcagagg aattgtttga tggctaccct caccactggc gtggttcttc ttcgctggca
     1201 acttcttagt gccgtaatga tgtttctggc cagcacactc aacatccgtt ttcgtcggtc
     1261 tgattatgtc gggcttgcgg tgatcagcag cggtctgggc gttgtttccg cctgttggtt
     1321 cgcaatgggg ttgcttggca tcacaatggc ggacatcacc gctatctggc acaacatcga
     1381 gtcggtgatg atagaagaga tgaatcagac accgccacaa tggccaatga ttttgacctg
     1441 atacgtagaa gcctccata
//
LOCUS       DADMJB010000315         1405 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.321, whole genome shotgun sequence.
ACCESSION   DADMJB010000315 DADMJB010000000
VERSION     DADMJB010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1405)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1405)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1405
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.321"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(1..483)
                     /locus_tag="JN078_004224"
     CDS             complement(1..483)
                     /locus_tag="JN078_004224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAY9043184.1"
                     /translation="MEINVTAPALLTDEHILQPFDCGNEVLSNWLRGRAMKNQMLNAS
                     RTFVICLEDTLRVVGYYSLATGSVTHAELGRSLRHNMPNPVPVVLLGRLAVDVCIQGH
                     GFGKWLLSDAIHRVVNLADQVGIKAVMVHAIDDDARAFYERFGFVQSVVAPNTLFYKV
                     "
     gene            complement(474..776)
                     /locus_tag="JN078_004225"
     CDS             complement(474..776)
                     /locus_tag="JN078_004225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858193.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HAY9043185.1"
                     /translation="MEVFMSTAASVRKTPREHQINIRATDEERAVIDYAASLVNKNRT
                     DFIMELAYQEAKNIILDQRLFVLDNERYDSFITQLEAPVQNAEGRERLMAVKPEWK"
     gene            1048..1320
                     /locus_tag="JN078_004226"
     CDS             1048..1320
                     /locus_tag="JN078_004226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_145811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043186.1"
                     /translation="MSHNLEHQKVHTRMVKEVLKAVARANNHPYKSVFADFITGHPSC
                     TVCFWETFHKMYPDSPYEYVTFCHTCRRFDLYETEAEMKADDPKWW"
BASE COUNT          405 a          358 c          304 g          338 t
ORIGIN      
        1 tcagacttta taaaacaagg tattaggtgc cacaactgac tgaacaaaac caaaacgctc
       61 ataaaatgct ctggcgtcat catcaattgc atgtaccata acagccttaa tgccaacctg
      121 atcagccaga ttgacaaccc ggtgaatggc atcacttagt agccatttac cgaaaccatg
      181 cccctggata caaacatcaa cagccagacg ccctaacaga acaacaggga caggattggg
      241 catgttatgc cgcaaactgc gaccaagctc ggcatgagtg acggaaccag tagctaatga
      301 gtagtatccc acaacacgta aagtatcctc caagcaaata acgaacgtgc gagaagcatt
      361 gagcatctgg tttttcatag cccgaccacg taaccagtta cttagcacct catttccaca
      421 gtcaaatggc tgaagtatat gctcatccgt caacaatgct ggcgcggtga catttatttc
      481 cattcaggct ttaccgccat cagacgttca cgcccttctg cattctgcac aggagcttcc
      541 agttgcgtaa taaacgaatc ataacgttcg ttatccagca caaataaacg ttgatccagg
      601 ataatgtttt tagcttcctg gtacgccagt tccatgatga aatcggtacg gttcttattg
      661 accaagctcg cagcataatc aataacggct cgttcctcat cagttgcccg gatgttaatc
      721 tgatgttctc gcggtgtttt acggacgctt gcagctgtag acataaaaac ctccattggt
      781 aacaatttgc tatgcaatta atgttatcgc aaatggtaac agaacgctat acagaatcac
      841 ttacgggaaa agcgatcccc tgataaaaac aatggcagag acctgaacat tgtgacgatg
      901 atctgtgtcg gcgcacaaat catgtctgat tacggccgtt taatgtgatt ttgataatga
      961 aatgcctgaa ccacggcagc ctggcggctg caaatcgggg tgtggcagaa tatgagcttt
     1021 cagagtaacc atccagaatg agttcccatg tcacacaacc tggagcacca gaaagtccac
     1081 accagaatgg tgaaagaggt tctgaaagcc gtcgccagag ccaataatca cccttataag
     1141 tccgtatttg cagactttat caccggtcat ccctcctgca cggtctgttt ctgggaaacc
     1201 ttccacaaaa tgtacccgga ttcaccgtac gaatacgtca cgttctgcca tacctgccgt
     1261 cgttttgatt tatacgaaac agaagcggag atgaaggcgg atgacccgaa gtggtggtga
     1321 ttttcagccc cgaccgctga aacgcctgtt cacagccaac cagtgctgga cgtccttcct
     1381 ggatgcgggc ggtctgcgcg atatc
//
LOCUS       DADMJB010000316         1360 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.322, whole genome shotgun sequence.
ACCESSION   DADMJB010000316 DADMJB010000000
VERSION     DADMJB010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1360)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1360)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1360
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.322"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(72..137)
                     /locus_tag="JN078_004227"
                     /pseudo
     CDS             complement(72..137)
                     /locus_tag="JN078_004227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000280980.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="omptin family outer membrane protease"
     gene            370..474
                     /locus_tag="JN078_004228"
                     /pseudo
     CDS             370..474
                     /locus_tag="JN078_004228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            814..1071
                     /locus_tag="JN078_004229"
     CDS             814..1071
                     /locus_tag="JN078_004229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016230781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm development YmgB/AriR family protein"
                     /protein_id="HAY9043187.1"
                     /translation="MHSDYYNMVFGEKLANILYEANSQFFYERNVIEEAVNALFCERE
                     IINNKNIIKKLMFFLSDVNHTKKDVVQSALNIIIDITSGDI"
BASE COUNT          440 a          255 c          259 g          406 t
ORIGIN      
        1 gctgcatgac aaggtcatcg ggcattatct gaacataaaa cactatcagt aagttggagt
       61 cattacctcc tcccgaactc aaagctatca tacagataat tactggttaa ccctatatag
      121 ggcattttaa agtgttgtga tcttacccag caatagtgga cacgcggcta agtgagtaaa
      181 ctctcagtca gaggtgactc acaagacaaa acagtttcaa ccagtaaaaa aacgtaaaca
      241 ccattcgcat gaatttcgta gttaagatct gaagcttgca gaatgcatcg gtgttactgc
      301 cggagtccgt gaacttagtc tgcatgaatc accacagctt tacatctgtc gcagtaaaca
      361 gcaaaatcag caaacttact taattatatc gagtgcgatt acaatcgctg gcgatggtac
      421 agttggtgtg gcggtctcag tccggaacaa tttgaaaatc agaatctcac ttaaaacggc
      481 atccatttta caaaagatgg ccgtctgtgt atttgtaatg aataccttct acatgtttag
      541 agtgcataat ccacgacaag gcgatatcct aaaaattagc tagcaggcaa ctttgatggc
      601 atagataatg tttttagtaa aaaagagttg actgaatata atacagcctc ttcctacata
      661 agaaggaatg tgctcacaaa aaaaaaccat tagtctgctt cctgttctta caataatcag
      721 tattatgtat tttatttata tagcaaaata tgcttattac acctgtcata attaggcatg
      781 gtaaaattat tgactgaacc ctgggggaga aagatgcaca gtgattatta taatatggtt
      841 tttggtgaaa aattggccaa tattttatat gaagctaact ctcaattttt ttacgagaga
      901 aatgtcatag aagaggcagt caacgcttta ttctgtgagc gtgaaataat aaacaacaag
      961 aacataataa agaagctgat gttctttttg tcagatgtta atcacaccaa gaaagatgtt
     1021 gttcagagcg cacttaatat tatcattgac attacatcag gtgatatttg agattttaca
     1081 taaaagataa tctctcaagg agtcttatct gaaaacgaaa tatatagtcc ctctcgtttt
     1141 gtaatatcga ttggctttgt tgaatcggtt acgtaccccg gagctggtca tattttcagg
     1201 taatacacac gctttcagac atttcggctt tcgtcatttt ggtatcatgg gcatagcttc
     1261 tgctacctga gcatcataat cacgcagctt cagtgaagca gtgaccacct gtttaacccg
     1321 gtgtatcgtt atgatcttat ccagcaataa tggacacgcg
//
LOCUS       DADMJB010000317         1357 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.323, whole genome shotgun sequence.
ACCESSION   DADMJB010000317 DADMJB010000000
VERSION     DADMJB010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1357)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1357)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1357
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.323"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            76..1020
                     /gene="lpxM"
                     /locus_tag="JN078_004230"
                     /gene_synonym="msbB"
     CDS             76..1020
                     /gene="lpxM"
                     /locus_tag="JN078_004230"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858371.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HAY9043188.1"
                     /translation="MKKYKSEFIPEFKKNYLSPVYWSTWFLLGMIAGISMFPPSFRDP
                     VLAKIGRWAGRLSKKARRRATINLSLCFPEKSDTEREIIVDKMFATALQSIVMMAELA
                     IRGPEKFQKRVFWKGLEILEEIRYNNRNVIFLVPHGWSVDIPAMLLAAQGEKMAAMFH
                     QQRNPVIDYVWNSVRRKFGGRLHSREDGIKPFIQSVRQGYWGYYLPDQDHGPEYSEFA
                     DFFATYKATLPIIGRLMNISQAMIIPLFPVYDEKKHFLTIEVRPPMDACIASADNKMI
                     ARQMNKTVEILVGSHPEQYIWVLKLLKTRKSNEADPYP"
     gene            complement(1174..>1357)
                     /locus_tag="JN078_004231"
     CDS             complement(1174..>1357)
                     /locus_tag="JN078_004231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001395480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HAY9043189.1"
                     /translation="IYQPVYSPWVNHAERLWQALHDTITRNHQCRSMWQLLKKVRHFM
                     ETVSPFPGGKHGLAKV"
BASE COUNT          389 a          265 c          312 g          391 t
ORIGIN      
        1 atttaaatta aggtttgatg tattctctga ataaaacagt aatgataatt ttggtagagg
       61 cattcgcact aaataatgaa aaaatataaa tctgagttta ttcctgaatt taagaaaaat
      121 tatctttccc ctgtttactg gtctacatgg ttccttttgg gaatgattgc aggtatttca
      181 atgtttcccc cttcattcag agatcctgtc ttggcaaaaa tagggcgttg ggcgggcaga
      241 ttgagcaaaa aagctcgtcg cagggcgacg attaatttat cgctttgttt cccagaaaag
      301 agtgatacag aacgggaaat aattgtcgac aaaatgtttg ccacagcatt gcaatccata
      361 gtgatgatgg cagaactggc aattcgtggt ccggaaaagt tccagaaacg agtgttctgg
      421 aaaggcctcg aaattcttga ggaaattcga tacaataaca gaaatgtgat ttttctggtt
      481 ccccatggct ggagcgtgga tattcctgca atgttgctgg cagctcaggg ggaaaaaatg
      541 gccgccatgt ttcatcagca acgaaatcca gtgattgatt atgtctggaa ttctgtacgg
      601 cgtaaattcg gggggcgctt acattcccgg gaggatggga taaaaccatt tattcagtca
      661 gtacgccagg gatactgggg gtattacctt ccagatcagg atcatggtcc tgaatacagt
      721 gaatttgctg atttttttgc gacctataaa gcgacattac caattattgg acgtctgatg
      781 aacatcagtc aggctatgat tataccgctt ttcccggttt atgatgaaaa aaaacatttc
      841 ctgactattg aagttcggcc accaatggat gcatgcattg ccagcgcgga caataaaatg
      901 attgcccgac aaatgaacaa aacagtggaa attttggtgg ggtcacatcc ggaacagtat
      961 atctgggttt taaaattgtt aaaaacgcgc aaatcaaacg aagcggaccc gtacccttga
     1021 aattataaag tacaggtatt tccactagtt gtttcttaca ggttaccaat cgaaacacat
     1081 cccccttccg tgtgttgccc gtttggcacg gaggactgtg tagatgcagt tcgttaaatt
     1141 taatttatgc ctaaatagct gcgcttaata ccgctacact tttgccagtc catgtttgcc
     1201 tccggggaat gggctgacgg tttccataaa atggcgaact tttttcaaca gttgccacat
     1261 tgagcggcac tgatgattac gcgttattgt gtcgtgaagt gcctgccata gccgttcagc
     1321 atgattcacc catggcgagt aaaccggctg ataaatg
//
LOCUS       DADMJB010000318         1346 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.324, whole genome shotgun sequence.
ACCESSION   DADMJB010000318 DADMJB010000000
VERSION     DADMJB010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1346
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.324"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            220..1167
                     /locus_tag="JN078_004232"
     CDS             220..1167
                     /locus_tag="JN078_004232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001361319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HAY9043190.1"
                     /translation="MKNVLVTVPSFSARCVSASKLLRENNFNLIIKNNVEHLLKSEST
                     ALRESICAVIAGKDCYQADTLSLLPGVKIISRFGTGIDNIDLRAAQQSGIVVNNAVGI
                     NSNAVAEFIIGLIFASMRNIPGSYHAMQNGYWGESHGYELQGKRIGMVGYGNIGKTLA
                     KRLSGFDVELLAYDKQPDYQVADKVGVQFVSIEDIFMQSHVIIVLLPFSPELENFISH
                     KYLSMMRNGALIINAARGKLLDEGALLQVIEERNVFAALDVFSSEPLAQFSPLLHAKN
                     IITTPHIAAATVESYQQTGTHVAQSIIDYFAGREIKNVL"
     gene            complement(1246..1322)
                     /locus_tag="JN078_004233"
     tRNA            complement(1246..1322)
                     /locus_tag="JN078_004233"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1286..1288),aa:Met,seq:cat)
BASE COUNT          359 a          272 c          325 g          390 t
ORIGIN      
        1 aggtttagca ccgtcatgct cgtctactgt tgttctggtt gttggtgatg cggtggcgct
       61 tgcactctct gaattgaaaa aatttactcg tgctgatttc ggcttatatc atccaggagg
      121 tgcactcggc attaaagcaa attcataatt tcaaagtata aatacagtga ccggtcacgc
      181 catcttttgg ggtggcgttc attgaagtga gtgtcagcta tgaaaaatgt tctggtcacc
      241 gtccccagct tttcagcacg ctgtgtttcc gccagcaagt tgctaagaga gaataatttt
      301 aatcttatta ttaagaataa tgtggagcat ctgcttaaat cagaatccac tgcattacga
      361 gaatctattt gcgcggtcat cgccggaaaa gattgttatc aggcggacac gctatcattg
      421 ctgcctggtg tgaaaataat atcgagattc gggacgggga tagataatat tgatcttcgt
      481 gcagcacaac aatccggtat tgtagtcaat aatgcggttg ggattaattc aaatgctgtc
      541 gcggaattta tcattggact tatcttcgcg agcatgagaa atattcccgg cagctatcat
      601 gcgatgcaaa atggctactg gggtgagtcg catggctatg aattacaagg caaacggatt
      661 ggcatggttg gctacggcaa tataggtaaa accctggcaa aaaggttatc cggttttgat
      721 gttgagcttt tagcttatga caaacaaccc gattatcagg ttgctgacaa agttggagtt
      781 cagtttgtat caattgaaga tatctttatg cagtcgcatg tcatcattgt tcttttgcct
      841 ttttctcctg agctggagaa cttcattagt cataaatatt tgtcgatgat gcgcaatggt
      901 gctctaatca tcaatgccgc aaggggaaag ttgctggatg agggcgcttt actacaggtg
      961 attgaagaac gaaatgtgtt tgcggcgctg gatgtgttta gctctgaacc gttggcgcaa
     1021 tttagcccac tgctacatgc caaaaatatc attacaacgc cgcatattgc ggccgccacc
     1081 gttgagtcat accagcaaac cggtacacac gttgcccagt cgataattga ttacttcgca
     1141 ggaagggaga taaaaaacgt gttgtgagtt cagcgaacga agtttttaaa tacaaaaaaa
     1201 acgcaatttg tggaacacat tgcggtttat cagcattcta agtattggtt gcgggggccg
     1261 gatttgaacc gacgaccttc gggttatgag cccgacgagc taccaggctg ctccaccccg
     1321 cgtcaccgta ctgctttatt tcatca
//
LOCUS       DADMJB010000319         1343 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.325, whole genome shotgun sequence.
ACCESSION   DADMJB010000319 DADMJB010000000
VERSION     DADMJB010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1343)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1343)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1343
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.325"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            86..1005
                     /locus_tag="JN078_004234"
                     /pseudo
     CDS             86..1005
                     /locus_tag="JN078_004234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415843.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
     gene            1005..>1343
                     /locus_tag="JN078_004235"
     CDS             1005..>1343
                     /locus_tag="JN078_004235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012562879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAY9043191.1"
                     /translation="MKHIQIRNSDMAWHIAANIQFPPNFDESKQYPAIISVHPFGSCK
                     EQTSGNIYGKALAEKGYLVLAYDASFQGESGGEPRWIEDPTQRVEDISRVIDYAVTLP
                     YVNAERIGVLG"
BASE COUNT          379 a          302 c          326 g          336 t
ORIGIN      
        1 tttagggtct aatcaactta atgatcaata tctatagtga tatcaccaac cgttaaaacg
       61 aaccgacaac tccatgagga acggaatgat gaataataaa gtcagcttca ctaacagcaa
      121 taatccaacc atctctttgt ctgcagtgat ctatttccct ccaaaatttg atgaaacccg
      181 tcagtatcag gcaattgtgg tatctcaccc aggtggggcg ttaaagaaca aacggccgga
      241 acctatgcca aaaaactggc ggaaaaggga tttgtcacta ttgcttatga cgcatcttat
      301 caaggtgaaa gtggcggcga gccgcgtcag ttagaaaacc catacattcg tactgaagac
      361 atcagtgccg tgattgatta cctgacaacg ctttcttatg tcgacaatac ccgaattggt
      421 gcgatgggaa tttgtgccgg tgcaggatat acagccaatg ctgcaattca ggatcgccgc
      481 atcaaggcca tcggtaccgt tagtgcggtc aatattggtt cgatgttccg taatggttgg
      541 gaaaacaatg tgaaatctat tgatgccctg ccatacgttg aagcgggttc aaacgcccga
      601 accagcgata ttagcagcgg agaatatgcc gttatgccac tggcaccaat gaaggagtcc
      661 gatgcgccga acgaagaact gcgtcaggcc tgggagtatt accacacccc tcgcgcgcag
      721 tatccaacag caccgggtta cgctactttg cgcagcctta accagattat tacctttgat
      781 gcttaccata tggcggaagt gtacctgact cagccgatgc agattgtggc gggcagccag
      841 gcagggagca aatggatgag tgacgatctg tacgatcgag catcaagcca agataaacgc
      901 tatcacattg ttgaaggcgc aaaccatatg gatctttatg acggcaaagc ctatgtggct
      961 gaagctattt cagtattagc tccgttcttt gaggaaactc tgtaatgaaa catattcaaa
     1021 tccgcaatag tgatatggcc tggcatattg ctgccaatat tcagtttcca ccaaattttg
     1081 atgagtcaaa acagtatccg gcgattatca gcgtccatcc ttttggcagt tgtaaggagc
     1141 agacgtctgg caatatctat ggcaaagcat tggctgaaaa aggctatctc gttctcgctt
     1201 atgacgccag tttccaggga gaatctggtg gggagcctcg ctggatagaa gatccgacac
     1261 agcgcgtaga ggatattagc cgtgttatcg attatgcagt aactctgcca tatgttaatg
     1321 ctgaacgtat tggcgtgctg gga
//
LOCUS       DADMJB010000320         1333 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.326, whole genome shotgun sequence.
ACCESSION   DADMJB010000320 DADMJB010000000
VERSION     DADMJB010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1333
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.326"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..173)
                     /locus_tag="JN078_004236"
     CDS             complement(<1..173)
                     /locus_tag="JN078_004236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000460887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043192.1"
                     /translation="MFDYQVSKHPHFDEACRAFALRHNLVQLAERAGMNVQILRNKLN
                     PAQPHLLTAPEIWL"
     gene            complement(206..427)
                     /locus_tag="JN078_004237"
     CDS             complement(206..427)
                     /locus_tag="JN078_004237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001247705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulator"
                     /protein_id="HAY9043193.1"
                     /translation="MRPNISITLTTPHVTIERYSELTGLSIDTINDMLADGRLIRHRL
                     RKDKKREKVMINIAAMTVDALSECNLNLN"
     gene            553..1122
                     /locus_tag="JN078_004238"
     CDS             553..1122
                     /locus_tag="JN078_004238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001047316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage repressor protein"
                     /protein_id="HAY9043194.1"
                     /translation="MNLEKGGRGAIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD
                     SFPAEWVIQCALETGTSLNWLTTGHGSKQTSGNTNTMEVAKYVLSDGALREDGFYIFD
                     KGFLPSTFKKPFVITDNNSEFICDKEFDDIRDGKWVISIDGEVTIRDITRLPGGRIFV
                     EGGNRAFECKIEDIEIIGKIISLTVKYVR"
     gene            1138..1329
                     /locus_tag="JN078_004239"
     CDS             1138..1329
                     /locus_tag="JN078_004239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001513672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043195.1"
                     /translation="MLGKVFFVVLSCSLLLSPLTTYAKNYPCSGKKGGVSHCTSDGKF
                     VCNDGTISKSKKICTKNSR"
BASE COUNT          397 a          240 c          299 g          397 t
ORIGIN      
        1 agccagattt ctggtgcggt taataaatga ggctgagctg ggttcagctt gttccgcaga
       61 atctgcacat tcatgcctgc acgttctgcc agttgcacca gattgtggcg cagtgcaaat
      121 gcacgacagg cttcatcaaa atgtggatgt ttggaaactt ggtaatcaaa catggtcaat
      181 gcctctgatg tatttcagaa tcgaactaat taaggtttag attgcattct gaaagcgcat
      241 caacggtcat tgctgctatg ttgatcatca ctttttcgcg ttttttatct ttgcgcagac
      301 ggtgacggat aaggcgtcca tcagccaaca tgtcattgat ggtatcgatg gatagccctg
      361 tcagctcgct atagcgttca atagtcacat gaggcgtggt aagagtgatt gaaatgttag
      421 gtctcatgat gcaacattcc tcgtttaatg atgattaatc aggacgaata cggatcgttt
      481 gtattttgtg aacaccataa acatatgatt gcacagtgaa atcgtcaaga taaaagttca
      541 cttggagtga ccatgaattt ggagaaaggc ggacgaggcg ccatagagcg catggtagaa
      601 gcttatggat tcaagactcg acaggcgttg tgcgatcatt taggaatctc taaaagtaca
      661 ctcgccacac gctacatgcg tgactcattc ccagcagaat gggtaatcca gtgcgccctt
      721 gaaacgggca cctcgcttaa ttggctcaca accggacatg gttcaaagca aacttcaggt
      781 aatacaaata ctatggaagt tgctaaatat gtattatctg atggtgcctt gcgtgaagac
      841 ggtttttata tttttgataa gggatttcta ccctctacgt ttaaaaaacc ttttgtcatc
      901 acagataaca attctgaatt tatttgtgat aaagaatttg atgacatacg tgatggtaaa
      961 tgggtaataa gtattgatgg cgaagtaacg atccgtgaca ttactcgttt acccggtgga
     1021 agaatcttcg tcgagggtgg aaacagagcc ttcgaatgta agatagaaga cattgaaata
     1081 attggtaaaa ttataagttt aacagttaaa tatgttagat aataccggga ggaaactatg
     1141 cttggtaaag tattttttgt ggttttatca tgctctttgt tattaagccc actaactacc
     1201 tatgctaaaa attatccttg ttctgggaaa aagggaggtg tctctcactg tacctccgat
     1261 ggaaaatttg tttgcaatga tggaactatt agtaaatcca aaaaaatctg tactaaaaac
     1321 tcacgataac ttt
//
LOCUS       DADMJB010000321         1329 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.327, whole genome shotgun sequence.
ACCESSION   DADMJB010000321 DADMJB010000000
VERSION     DADMJB010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1329
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.327"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(170..499)
                     /locus_tag="JN078_004240"
     CDS             complement(170..499)
                     /locus_tag="JN078_004240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310836.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF496 family protein"
                     /protein_id="HAY9043196.1"
                     /translation="METTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLL
                     LDNLSDYIKPGMSVEAIQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGE
                     MKNGEAK"
     gene            complement(671..>1329)
                     /locus_tag="JN078_004241"
     CDS             complement(671..>1329)
                     /locus_tag="JN078_004241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HAY9043197.1"
                     /translation="TGEIDTALWRSGDVLLGSLLAMLFTGIWPQRAFIHWRIQLAKSL
                     TEYNRVYQSAFSPNLLERPRLESHLQKLLTDAVKMRGLIAPASKETRIPKSIYEGIQT
                     INRNLVCMLELQINAYWATRPSHFVLLNAQKLRDTQHMMQQILLSLVHALYEGNPQPV
                     FANTEKLNDAVEELRQLLNNHHDLKVVETPIYGYVWLNMETAHQLELLSNLICRALRK
                     "
BASE COUNT          326 a          311 c          312 g          380 t
ORIGIN      
        1 agtgcggtta ataacaatgg agttacagaa ctttttgcct tgctgcatac agaagatgtc
       61 tgtcgctaat ttcggtaagt tatcagatgg gaatgatgac ggtgatacac agaaaagaat
      121 caatgagcaa tgagggttgc caggcaaccc tcattgaata aaacaggaat tacttcgctt
      181 cgccgttttt catttcgccc atagctttca gctttttgga gatatcgcgg cgttctttgg
      241 agagctcggc atttttgatg atgtaatcgt caacgcgatc ttcatagtca cctttcatgc
      301 tggcgatgat gccctggatt gcttcaacgc tcatccccgg cttgatgtaa tcgctcaggt
      361 tgtccagcag caggacgcgc ttctggttgt cacggatctt tttctcaacg tcctgaattt
      421 cacgttgcag tttgttctta cgacggaaca gacgaacaaa ttccagtacg tcctggaatg
      481 aaggcttggt agtttccatt tttatacccc tgataatgtg agagtcggat tcgtttaagc
      541 aaccgctatc cgttagagcc aacattactc atagctgccg cagatgacaa tgcttttatc
      601 ccttttcact atcataccct ttatccttgc tgaatcgaag cagcagcaag atgattctgt
      661 agttcaggaa ttatttgcgc aaggcccggc aaatcagatt cgatagcaac tcaagctgat
      721 gtgccgtttc catgttcagc cacacataac catagattgg tgtttccaca accttcaggt
      781 catggtggtt attgagcaac tgacgcagct cttccactgc atcgttcaat ttttccgtat
      841 tggcaaaaac cggctgcgga ttaccttcgt acaacgcatg aacaaggctc agcagtattt
      901 gctgcatcat gtgctgggta tcacgaagtt tttgcgcgtt caataacacg aaatggctgg
      961 ggcgcgtggc ccagtacgca ttgatttgca actccagcat acaaaccaga ttgcggttaa
     1021 tggtctggat accttcatat atcgattttg gaatacgggt ttctttgctg gcgggcgcaa
     1081 tcagcccacg cattttcacg gcatcggtca ggagtttttg tagatggctt tccagacgtg
     1141 ggcgttcgag taagttcggt gagaatgcag attgatagac ccgattatac tcggtcagac
     1201 ttttcgccag ttgaatgcgc cagtggatga acgcccgttg tggccagata ccggtaaaca
     1261 acattgccag taaagagccg aggagcacat cgccgcttcg ccataacgcc gtatcaattt
     1321 cacctgtcg
//
LOCUS       DADMJB010000322         1316 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.328, whole genome shotgun sequence.
ACCESSION   DADMJB010000322 DADMJB010000000
VERSION     DADMJB010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1316
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.328"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..744
                     /locus_tag="JN078_004242"
     CDS             <1..744
                     /locus_tag="JN078_004242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS element protein"
                     /protein_id="HAY9043198.1"
                     /translation="YTPARKIHLYHCDHRGLPLALISTEGATEWCAEYDEWGNLLNEE
                     NPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNP
                     ISEIDPQGLNPLILGVVALMSCGLFSSGGVIQSGQQRRDQYGRKVNPEADKLTDEHKS
                     GVNPGGNCSPQNLSDLQNEKNRLCNQSRACAPQMLRKEILRRYEINLACASVRKQINN
                     QCFGGGDKAHMEEENKAYKTAADCSGLIK"
     gene            790..1245
                     /locus_tag="JN078_004243"
     CDS             790..1245
                     /locus_tag="JN078_004243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004095918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043199.1"
                     /translation="MIHFPCQPLPHISNDIIGLDELDVVYNFFQKKQWNEIANNLKIK
                     DDSYALELGITFLPEKVFCYYIPLYIYVSLFNKNDFWVFESDFIQQYLCPEYRDYDDF
                     LNFVFNFSDIQLSIIAQFMSYESDAGFFYASKACMDFWEDYSPLLHKKI"
BASE COUNT          415 a          228 c          292 g          381 t
ORIGIN      
        1 tacacgccgg cgcgaaaaat ccacctgtac cactgcgacc atcgcggcct gccgctggcg
       61 cttatcagca cggaaggggc aacagaatgg tgcgcagaat acgatgagtg gggcaacctg
      121 ctgaatgaag agaacccgca ccagctgcag cagcttatcc gtttgccggg gcagcagtat
      181 gatgaggagt ccggcctgta ttacaaccgc caccgctatt atgacccgct gcaggggcga
      241 tatatcactc aggacccaat tgggctgaag gggggatgga atttttatca gtatccgttg
      301 aatccgatct cagagataga cccacaaggg ttaaatccgt taattcttgg tgttgtagca
      361 ctgatgagtt gcggtttgtt ttcatcaggt ggtgttatcc aaagtgggca acaacgcaga
      421 gatcaatatg gacgtaaagt taatccagaa gccgacaaat taacagatga acataagtca
      481 ggtgtaaatc ctggaggtaa ctgtagtccc cagaacctga gtgacttaca aaatgaaaaa
      541 aacagattat gtaaccagtc tagagcttgc gctcctcaga tgctgagaaa agaaatattg
      601 agacggtacg agataaattt ggcgtgcgct tcggtcagaa agcagattaa taatcagtgc
      661 tttggtggtg gagataaggc ccatatggaa gaagagaata aagcatataa aacagcagct
      721 gattgcagtg gcttaataaa atgaaaaaaa ataattttct ctaacgagag tgcagtctat
      781 gatgaactta tgattcattt tccatgccag ccattacctc atatttcaaa tgatattata
      841 gggctggatg aactggatgt tgtatataat tttttccaaa agaaacaatg gaatgaaata
      901 gccaataatt taaaaataaa ggatgactct tatgctttag agttaggaat tacattcctc
      961 cctgagaaag tattctgcta ttacatccct ctgtatattt atgtctcgtt gtttaataag
     1021 aatgattttt gggtttttga atccgatttt attcaacaat atttatgtcc tgagtatcgg
     1081 gattacgatg attttttgaa ttttgttttt aatttttcag atatacaact atctattatt
     1141 gcacagttta tgtcttatga atcagacgct ggattctttt atgcaagtaa agcttgtatg
     1201 gatttttggg aagattattc acctctatta cataagaaaa tttaatcgta aaaggtataa
     1261 atggtttaat aaaaaacttg tctactcgtt ggagtagatg aaaaataaga tgacgt
//
LOCUS       DADMJB010000323         1308 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.329, whole genome shotgun sequence.
ACCESSION   DADMJB010000323 DADMJB010000000
VERSION     DADMJB010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1308)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1308)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1308
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.329"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(421..957)
                     /locus_tag="JN078_004244"
     CDS             complement(421..957)
                     /locus_tag="JN078_004244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAY9043200.1"
                     /translation="MQTQNVVTDKEREIRKRDLEDKDRKNASERRQEQKNQNFTQVYP
                     LGWKRLRELFRKNPGAAELYSMLAENIDGSCGAVVADQTHLASLLGVGRQTISRYVKW
                     LEEQGVLVKIPVAGKVCAYALNPHEVWKGYDNAKPYAAFLTKTLVNKDGDIQRRIMAM
                     FHGNDARQGMEGDTPEAE"
BASE COUNT          311 a          318 c          307 g          372 t
ORIGIN      
        1 aaaaaaaatt ggggaaggtg gttgtgttca cgtagtgagc gcaaccacct gccagacggg
       61 ttttagcgcc gcaggccgca catgtttctg agccaacggc gaggaaacat ataagtgcgc
      121 atctctctaa tttcacgaat ttgagagatg agatcagtct ggataatcgg agtactccgc
      181 ctctagccgt cctggtgaac cagtccggca agacccacga aatcacccgt aaaacgcaat
      241 aaaacgcgtt ttgacgcgtt ttttgacgtt ctacgggctc acgtgggctt tgggcggaaa
      301 aatggcttac gtgcgttctg agagcgtttt agggctttgc agggtggagt ggtgaagcag
      361 ctccttgtgg aacctgtacc gcccttgcgg gcgggcttcg gcgatttggc gaacgggaat
      421 ctattcggct tctggcgtgt cgccttccat gccctgacgg gcatcgtttc cgtggaacat
      481 ggccatgatt cggcgctgaa tatcgccgtc tttgttgact agggttttcg tcaaaaatgc
      541 ggcatacggt ttggcattat cgtagccttt ccagacttca tgcgggttga gagcataagc
      601 gcataccttt ccagctactg ggatttttac taaaacacct tgctcttcta gccacttaac
      661 gtacctagat attgtttgtc taccaacacc aagcaacgat gctaaatggg tttgatcggc
      721 aacaaccgca ccacaagagc catcaatgtt ttctgcaagc attgaataaa gctctgctgc
      781 ccccggattc ttcctgaaaa gctctctgag acgcttccag cctaaagggt atacttgggt
      841 gaagttttgg tttttttgct cctgtcgacg ctctgaggcg tttttacggt ctttatcttc
      901 aagatctctt tttctgattt cccgttcttt gtccgtcaca acattttgag tttgcataga
      961 ctatctctcc tgcgacacca tgtcgtttga aagtaacata cagttgtcat ttttttgtgt
     1021 caacatgtcg catttgcacg acatgttggg tatatctgtc gcatcctata gatgcgacaa
     1081 cgttgtcgcc cctaggatgc gacaacacat ttataaaccc ataataaaaa caacaacata
     1141 caattttttc cttcttatct aaaaagatct cacagcgagc tgtgagatct ccaggtagca
     1201 ccctcctttc agtcgggcaa aaaacggtga aaatttaacc attggcaacc gaaaaatcgt
     1261 gggggcccct tcaggggttc cgattttttt gttgccaacg caccgatc
//
LOCUS       DADMJB010000324         1302 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.330, whole genome shotgun sequence.
ACCESSION   DADMJB010000324 DADMJB010000000
VERSION     DADMJB010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1302
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.330"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..908
                     /gene="pocR"
                     /locus_tag="JN078_004245"
     CDS             <1..908
                     /gene="pocR"
                     /locus_tag="JN078_004245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="regulatory protein PocR"
                     /protein_id="HAY9043201.1"
                     /translation="AATLNSELINKIAQDFAQATSLAVVVVNIHGDEISELFNFTPFC
                     QMMRQHPQLSTRCRMSDRCGGLEASKSDQPCIYRCHAGLTDFSIPLVIAGHLVGFVLC
                     GQVRLRNDYVDLVDILNVDDCWQADPELLNEFRKVPEMDYSRVMASADLLKLIVENCL
                     KKQLNFVVIKENKSQSDSVRQTRAPSPHDNKMKKALRYIDAHLSDDLRLEDVASHVYL
                     SPYYFSKLFKKYHGIGFNAWVNQQRMASARELLCHSDWSIASIARNLGFSQTSYFCKV
                     FRQTYQVTPQVYRQQVSENAAMETV"
     regulatory      997..1172
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
BASE COUNT          353 a          277 c          324 g          348 t
ORIGIN      
        1 ctgcggcgac acttaattca gaactcatta ataaaatcgc gcaggatttt gcgcaggcga
       61 ccagccttgc ggttgtcgtg gtcaatattc acggcgatga aatttccgag ctgtttaact
      121 tcactccatt ttgtcagatg atgcggcaac accctcagct aagcactcga tgtcgcatga
      181 gcgatcgttg tgggggcctg gaagcctcta aatccgatca gccttgtatt tatcgctgtc
      241 atgccggatt aaccgatttc tctattccac tggtaatcgc cgggcattta gtcggttttg
      301 tattgtgcgg gcaagttcgt ctgcgtaatg attatgtcga tttggtcgat attctgaatg
      361 tcgatgattg ctggcaggca gatcccgaat tacttaatga atttcgcaaa gttcctgaga
      421 tggattactc aagagttatg gcctctgctg atttgttgaa gttgattgta gaaaattgcc
      481 tcaaaaaaca actcaatttt gtggttatta aagagaacaa atctcagtca gattcggtgc
      541 gccagactcg tgcgcctagt ccccacgaca ataaaatgaa aaaagcttta cgctatattg
      601 atgcgcattt atcagacgat ttgcgtctgg aagatgtcgc ctcgcacgtt tatctaagcc
      661 cttattattt cagtaagtta ttcaagaaat accatggaat cgggtttaat gcgtgggtaa
      721 accaacaacg gatggccagc gcgcgtgagt tactgtgcca tagtgactgg agcatcgcca
      781 gcattgcgcg taatttaggt ttttcgcaaa ccagttattt ttgcaaagtt ttccgtcaga
      841 cttatcaggt tacgccgcag gtgtatcgac agcaagtgag tgaaaatgcg gcgatggaaa
      901 cggtatagag taaatgctaa aaaaagggaa ggtttaaata aacgctggaa tgaataatta
      961 acgttattta cgtgttatgg gaaaagtaaa atcagctcat aacatacgct gacaggtgtg
     1021 gcacatttgt gcctgggaag agagtgaaaa tccctcgcag cccccgctgc tgtaatgctg
     1081 acaaacccga aaatgccact gatcgcgaga ttgggaaggt cgggagagga tgacgctaag
     1141 ccagaagacc agccagtcag tcaataccaa caacttcggt gggaagtggg ttgcccggaa
     1201 gcgtccggta gagtacaggc gcgtctttat acccctacca ccctgaaagg atcagggtat
     1261 ggcggcatca tttagttctt tcatcgcagt gccgacaggc ac
//
LOCUS       DADMJB010000325         1261 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.331, whole genome shotgun sequence.
ACCESSION   DADMJB010000325 DADMJB010000000
VERSION     DADMJB010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1261)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1261)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1261
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.331"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..1174)
                     /locus_tag="JN078_004246"
     CDS             complement(<1..1174)
                     /locus_tag="JN078_004246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000232707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9043202.1"
                     /translation="MVGFGNKYIAAQFGISPGLAATVNASVLIAALIGGLLANRVINR
                     FGQKRAFIIGMGLCTIGAAAVAIAPSIWWVLVCRVIMGFGLGIDFPLATNAVAELRGS
                     TSKKTGTSVNLWQMAWYVSTTVVYLVLLPLLLSGIAEEQLWRYGIFIGAIFAVIFMIL
                     RYFFIGESAMWAARVGRYQEACDILGKRYGVQARVAASGTTEAKFSEKAENKYSGGYG
                     ILFNDRYRKRTILGCVVATMQAWQYNAVGVYLPLTLAGIISGGLTGALTGSAVVNALC
                     GVTGGMIGSFILQRLGTRRQSMYGFAVVTLALLSLGALATTNPWLSLGLLGSIIFFHS
                     AGPGGLGMTIATLSYLPAIRPTGVGFARAIMRTGAIAGLIFWPMLWGALKTEAFYWL"
BASE COUNT          372 a          355 c          280 g          254 t
ORIGIN      
        1 ccaaccagta aaacgcttca gttttcaacg caccccacag catcggccag aaaatgagtc
       61 ctgcaattgc ccctgtgcgc ataatagcgc gggcaaatcc gaccccagta gggcgaatag
      121 cgggaagata agagagtgtg gcaatggtca tgcccagccc accaggaccc gctgaatgga
      181 agaaaataat tgatcccaat aaccctaaag acagccaggg attagtcgtt gccagtgcgc
      241 ctaacgacag caatgctaag gtcacaacag caaatccata catcgactgt cggcgagtac
      301 ccagtcgttg gagaataaac gagccgatca tcccgcctgt caccccacaa agggcattca
      361 cgacggcaga accggtcaac gcgccagtaa gcccgccact tattattccc gccaacgtaa
      421 gaggaagata aacacctacg gcgttatatt gccacgcctg catggttgcc acgacacagc
      481 caagaatggt gcgtttgcgg taacgatcat taaataagat gccatatcca ccactgtatt
      541 tattctctgc tttttccgag aatttcgctt ctgttgtacc cgatgccgca acgcgagcct
      601 gaacaccata acgttttccc agaatgtcgc acgcttcctg gtaacgcccg acgcgtgcgg
      661 cccacattgc ggattcacca ataaagaagt aacgcaaaat catgaagatg actgcaaaaa
      721 tagctccgat gaatattccg taacgccaca attgttcttc agcgataccc gacagaagca
      781 gcggcaaaag taccaaataa acaacggttg tcgaaacata ccaggccatt tgccagaggt
      841 tgaccgacgt tccggttttc ttcgacgttg aaccacgaag ctctgccacg gcattggttg
      901 ccaaagggaa gtcgatgcct aaaccaaagc ccatgatgac gcggcacacc agcacccacc
      961 agatactggg agcaatagct accgctgcag caccgatggt gcacagcccc atgccaataa
     1021 taaatgcccg cttttgccca aagcggttta ttactcggtt cgctaataaa ccgccaatta
     1081 acgcggcgat taatactgat gcattgacgg ttgcagcaag acccggcgaa atgccgaatt
     1141 gagcggcaat gtatttatta ccaaacccca ccatcgccgc ctagtaggca tcaatcaata
     1201 tgccgcccaa agcaataaaa ataacgccga tactggtgtt gattgcagag ttcttattaa
     1261 c
//
LOCUS       DADMJB010000326         1251 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.332, whole genome shotgun sequence.
ACCESSION   DADMJB010000326 DADMJB010000000
VERSION     DADMJB010000326.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1251
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.332"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            1..611
                     /locus_tag="JN078_004247"
                     /pseudo
     CDS             1..611
                     /locus_tag="JN078_004247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611198.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
     gene            726..>1251
                     /locus_tag="JN078_004248"
     CDS             726..>1251
                     /locus_tag="JN078_004248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001395480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS630-like element IS630 family transposase"
                     /protein_id="HAY9043203.1"
                     /translation="MPIIAPISRDERRLMQKAIHKTHDKNYARRLTAMLMLHRGDRVS
                     DVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLRELVKHSPGD
                     FGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIRDPHKDEK
                     MAAIHKALDECSAEH"
BASE COUNT          326 a          321 c          338 g          266 t
ORIGIN      
        1 attattttca acaggttgct ttcgctactt gatgcaaacg gctttattga ctggtctgcc
       61 accgcgctgg atggcagtaa tatccgggcg ctgaaatgtg ccgccggtgc tcaaaaaaac
      121 atcccgatat cgacggagat aatggcccgg gtcgctctcg cggcggtttt ggcaccaaaa
      181 tccatctggc aacagacgga agtggcctcc cgttaaatat cgtgctaagc cccggacaag
      241 ctcatgaaag ccagttcgcg caacgacttc tggacgggat tggcgttcag cgtcagaacg
      301 gcagcatgaa acgccgtgga catgcggtac tggctgataa agcgtattca gggcgcgcat
      361 tgcgcaacga gctgaaaaat aacggtataa aggcagtaat cccccgaaag tcaaatgaga
      421 aaatggcatc ggatggacgt gcacagcttg atcgtgatgc gtactgcaat cgtaatgtcg
      481 ttgaacggtg ctttgggcgg ctgaaagaat atcgccgcat cgccacgcgt tacgacaaaa
      541 cggcgagaaa ttacctggcg atggtgaaac tgggctgcat ccgactcttt tatcaacgct
      601 tacgtaatta agggacacag cctaaatagc tgcgcggaat agtagatccc tttgagggaa
      661 cttagcccgg attgtgcgat ctgatcaatc gccaaatcaa aacaaatcac caaccggact
      721 gagcaatgcc gatcatagca ccaatttccc gtgacgaacg acgcctgatg cagaaagcca
      781 tccataaaac acacgataaa aattatgccc gcagactgac tgccatgctg atgctgcacc
      841 ggggcgaccg tgtcagcgac gttgccagaa cgctctgctg cgcccgttcc tctgttggac
      901 gctggattaa ctggttcacg cagtcgggtg ttgagggact gaaatcatta cctgccgggc
      961 gtgcccgtcg ctggccgttt gagcatatct gcacactgtt acgtgagctg gtaaaacatt
     1021 ctcccggcga ctttggctac cagcgttcac gctggagtac agaactgctg gcaataaaaa
     1081 tcaatgagat aaccggttgc cagttaaatg ccggaaccgt tcgccgctgg ttgccgtctg
     1141 cggggattgt gtggcgaagg gctgcgccaa ctctgcgtat ccgtgacccg cataaagatg
     1201 aaaagatggc agcaatccat aaagcactgg acgaatgcag cgcagagcat c
//
LOCUS       DADMJB010000327         1236 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.333, whole genome shotgun sequence.
ACCESSION   DADMJB010000327 DADMJB010000000
VERSION     DADMJB010000327.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1236)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1236)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1236
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.333"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..1045
                     /locus_tag="JN078_004249"
     rRNA            <1..1045
                     /locus_tag="JN078_004249"
                     /product="16S ribosomal RNA"
     gene            1119..1194
                     /locus_tag="JN078_004250"
     tRNA            1119..1194
                     /locus_tag="JN078_004250"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1153..1155,aa:Glu,seq:ttc)
BASE COUNT          305 a          295 c          377 g          259 t
ORIGIN      
        1 actccgtgcc agcagccgcg gtaatacgga gggtgcaagc gttaatcgga attactgggc
       61 gtaaagcgca cgcaggcggt ttgttaagtc agatgtgaaa tccccgggct caacctggga
      121 actgcatctg atactggcaa gcttgagtct cgtagagggg ggtagaattc caggtgtagc
      181 ggtgaaatgc gtagagatct ggaggaatac cggtggcgaa ggcggccccc tggacgaaga
      241 ctgacgctca ggtgcgaaag cgtggggagc aaacaggatt agataccctg gtagtccacg
      301 ccgtaaacga tgtcgacttg gaggttgtgc ccttgaggcg tggcttccgg agctaacgcg
      361 ttaagtcgac cgcctgggga gtacggccgc aaggttaaaa ctcaaatgaa ttgacggggg
      421 cccgcacaag cggtggagca tgtggtttaa ttcgatgcaa cgcgaagaac cttacctggt
      481 cttgacatcc acggaagttt tcagagatga gaatgtgcct tcgggaaccg tgagacaggt
      541 gctgcatggc tgtcgtcagc tcgtgttgtg aaatgttggg ttaagtcccg caacgagcgc
      601 aacccttatc ctttgttgcc agcggtccgg ccgggaactc aaaggagact gccagtgata
      661 aactggagga aggtggggac gacgtcaagt catcatggcc cttacgacca gggctacaca
      721 cgtgctacaa tggcgcatac aaagagaagc gacctcgcga gagcaagcgg acctcataaa
      781 gtgcgtcgta gtccggattg gagtctgcaa ctcgactcca tgaagtcgga atcgctagta
      841 atcgtggatc agaatgccac ggtgaatacg ttcccgggcc ttgtacacac cgcccgtcac
      901 accatgggag tgggttgcaa aagaagtagg tagcttaacc ttcgggaggg cgcttaccac
      961 tttgtgattc atgactgggg tgaagtcgta acaaggtaac cgtaggggaa cctgcggttg
     1021 gatcacctcc ttaccttaaa gaagcgtact ttgcagtgct cacacagatt gtctgataga
     1081 aagtgaaaag caaggcgtct tgcgaagcag actgatacgt ccccttcgtc tagaggccca
     1141 ggacaccgcc ctttcacggc ggtaacaggg gttcgaatcc cctaggggac gccacttgct
     1201 ggtttgtgag tgaaagtcac ctgccttaat atctca
//
LOCUS       DADMJB010000328         1216 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.334, whole genome shotgun sequence.
ACCESSION   DADMJB010000328 DADMJB010000000
VERSION     DADMJB010000328.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1216)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1216)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1216
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.334"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..772)
                     /gene="ipaH4.5"
                     /locus_tag="JN078_004251"
     CDS             complement(<1..772)
                     /gene="ipaH4.5"
                     /locus_tag="JN078_004251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase
                     IpaH4.5"
                     /protein_id="HAY9043204.1"
                     /translation="MKPINNHSFFRSLCGLSCISRLSVEEQCTRDYHRIWDDWAREGT
                     TTENRIQAVRLLKICLDTREPVLNLSLLKLRSLPPLPLHIRELNISNNELISLPENSP
                     LLTELHVNGNNLNILPTLPSQLIKLNISFNRNLSCLPSLPPYLQSLSARFNSLETLPE
                     LPSTLTILRIEGNRLTVLPELPHRLQELFVSGNRLQELPEFPQRLKYLKVGENQLRRL
                     SRLPQELLTLDVSNNLLTSLPENIITLPICTNVNISGNP"
BASE COUNT          346 a          217 c          263 g          390 t
ORIGIN      
        1 atggattccc tgaaatgtta acattcgtac aaatgggcaa tgtgattata ttttcgggta
       61 atgaagttag taggttattg gaaacatcca gtgtcaatag ttcttgcggt aatctggata
      121 atctgcgtag ttgattttca cctaccttca aatattttaa gcgctgagga aattctggta
      181 gttcctgtag tctgttgccg gaaacaaaga gttcttgtag tctatgaggc aattcaggca
      241 agacagtaag gcgattacct tcaatacgta atattgttag cgttgatgga agctctggta
      301 acgtctccag actattaaaa cgtgccgaga gtgattgtaa atatggtggt aatgatggca
      361 gacatgacaa atttcgattg aatgaaatat taagcttaat cagttgagat ggaagtgtcg
      421 ggagtatatt caagttgtta ccatttacat gaagttctgt caaaagcgga gaattttcag
      481 gtagggagat taactcattg ttggaaatat taagttcacg tatatgcaaa gggagtggtg
      541 gtaaagaacg tagtttcagt aagcttaaat tgagaacagg ctcccgggta tccagacata
      601 ttttcaataa tcgaaccgcc tggatgcgat tttctgttgt tgttccttcc ctagcccagt
      661 catcccagat gcggtggtaa tctctggtac actgttcttc taccgataaa cgagatatac
      721 atgataagcc acaaagggaa cgaaaaaaag aatgattgtt gatcggtttc atttattaac
      781 ccctcactat tcatatcttg gtctattaat gcaaataaaa cgagaaagtc tttaaaaaaa
      841 caatcctaga gctttatcgg cgttttcatt ccagctggag gaatatgttc ctgtctttcc
      901 agtaaccgtc gattgttata tcagtctacc catgttaatg tgaccagttc tactttcatc
      961 cagtttggat tgatctttat cccctatatt ttcaaacaat ttttatcatt taactcatta
     1021 ctgtctcgat attcccatag caaacgatct ggttggttag cccctcaaaa aagtcagttg
     1081 cacgccgtaa atccctgccg gtattgagcg aggatttacg ggttgttgtt aaggtccgta
     1141 atcgggtcac agtttttccg gagtcaatcc ggtctgcggt ttatgcttat gcgacgtgat
     1201 tatgaatggt gcagtc
//
LOCUS       DADMJB010000329         1212 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.335, whole genome shotgun sequence.
ACCESSION   DADMJB010000329 DADMJB010000000
VERSION     DADMJB010000329.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1212)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1212)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1212
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.335"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            156..407
                     /locus_tag="JN078_004252"
     CDS             156..407
                     /locus_tag="JN078_004252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000198853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043205.1"
                     /translation="MTQKRRDRTEPKYKALDMTEHTLKVAIRTIDRHTREGYAKEHPD
                     LISAFMTTAAANFATLTEREIAEAEQVTTINVKTGEVES"
     gene            404..814
                     /locus_tag="JN078_004253"
     CDS             404..814
                     /locus_tag="JN078_004253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HAY9043206.1"
                     /translation="MTAQIAAYGRLVDDPQVKQTSKGTPMTLARMAVSLPCSQAQDGQ
                     ATLWLSVIAFGKQADFLAKHQKGDVASVSGTMQVSQWTGQNGETRQGYQVIADSVISV
                     RAARPGGNRRKTTGTQGNQPPAGGDDPYGDGIPF"
     gene            825..1097
                     /locus_tag="JN078_004254"
     CDS             825..1097
                     /locus_tag="JN078_004254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PerC family transcriptional regulator"
                     /protein_id="HAY9043207.1"
                     /translation="MVHDRIAEELEAKGFYRRAAARWGEVMLLVETDKERHQVTMRRL
                     ECSRKAQKPPEPPDNFGDLRKAVDRTYAEMGIDGVSDEIWRNYPDS"
BASE COUNT          368 a          284 c          358 g          202 t
ORIGIN      
        1 gcccgctctc cctcactttt cgacctgtat acatcctcaa aagtgagggg taaaaaaata
       61 cttatgaaac acacacatag aaaaaccgaa aatcccaact gcgacgaagt gagacgcttg
      121 aaaaagtgag gcgaaaaagt gagaggttgc gagaaatgac ccaaaaacgc agagacagaa
      181 cagagccaaa atataaagcg ttagacatga ctgagcacac cttaaaggtg gcaatcagaa
      241 cgatagaccg ccacacgcgg gaaggatacg cgaaggaaca tcccgacctg ataagcgcat
      301 tcatgaccac agcagcggca aactttgcca cgctgacaga acgggagatc gcagaagcag
      361 aacaggtaac aaccatcaac gttaaaaccg gagaggtgga atcatgacag cacagatagc
      421 ggcttacggg cggctggtgg acgacccgca ggtaaaacag accagtaagg gcacaccgat
      481 gacgctggcg cgtatggcgg tatcgttgcc atgtagtcag gcgcaggatg ggcaggcgac
      541 gttatggcta tcggtcatcg catttggtaa gcaggccgac ttcctggcta aacatcaaaa
      601 aggcgacgtt gccagcgtat ccggcacgat gcaggtcagc cagtggaccg gacagaacgg
      661 ggaaacgcgg cagggttatc aggttattgc agacagcgta atcagtgtcc gtgcggcacg
      721 tcctggcggg aacagacgca aaaccacagg cacacagggt aatcagccac cagcgggagg
      781 cgatgaccct tacggtgacg gtattccgtt ctgagggggt ggcgatggta catgaccgca
      841 tagcggaaga actcgaggcg aaaggctttt accggagggc ggcggcgcga tggggtgaag
      901 tcatgctgct ggtggagaca gacaaggaac ggcatcaggt tacgatgcga cggctggaat
      961 gttccaggaa ggcacagaag ccaccggagc cgccggataa cttcggagac ctgagaaagg
     1021 cagtagatcg cacttatgct gaaatgggta tagatggtgt aagcgatgaa atatggcgta
     1081 attacccaga cagctaatca acagccggag aaatccggct ttttttgcac cagttgaaac
     1141 ggtatggcgc attaccgggt tttcgtcacg gtcaggcata gttactatct gaaacaaaca
     1201 gacacaacag ag
//
LOCUS       DADMJB010000330         1210 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.336, whole genome shotgun sequence.
ACCESSION   DADMJB010000330 DADMJB010000000
VERSION     DADMJB010000330.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1210)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1210)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1210
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.336"
                     /strain="H111440273"
                     /db_xref="taxon:621"
BASE COUNT          370 a          209 c          237 g          394 t
ORIGIN      
        1 ttcaaaataa acgtttaata gggacaatca ccatttggat tgtccgctga ggaggcgaac
       61 gttttcctag acagctttat catgtcagcc cacattgttg gcgctgacaa tactaaggac
      121 aaacgatggg gaagtagctt tttagcgtta ttttcgggag taaaaaacat ggtatctttc
      181 cgtatgtcag ttgtatcttg ctggtattcg tagtcgtgat aaggcataca acgatattta
      241 tcttcacgtt agtgaagaat aagttgtttt gtgatctatg ttaatctggg attacaatcc
      301 gggcttgata catcgcatca cgacttttat tctcttcaga atagaatatg ttactccccg
      361 ttttacaggc tcaggatttg aattacaaat tatactttta agtgaacaat aactaggggt
      421 atttcttatt tcctgaaacc aggcttggcc catttcggga tgagtttgaa aaaactcttg
      481 acgcatacga tagtgatgaa ataaacgaaa caaattacgt caacaaactc aggcgtcttg
      541 cctgacatgc tcctgacatc attgatattc acgctcatct ggcatatgca tttgcgctct
      601 ttatgctgca attctggcga atgttcattt acagcgtcat caggatgccg ttatactcat
      661 tgataaaata ctaacatata accctgagaa taatcagggg acacgctggt tactggggac
      721 ggaattgtta cgtgctggca agcatgacag ggctctgtac gtattgacag gacatgtcaa
      781 tgaatttccc ccctactggt acgagcttgc tcttttacat tttatgaatg aggcatatat
      841 taatgctgca acggcatttc gatatggatt tttaacaagc atatattgtt gaaatgcttt
      901 gttagaatct ttatccattc cctggggctg tatagtatga tttttcaggt atttctgaat
      961 acagccaaat attattgcaa aatattctct aaattattag ttaaatatcc ataagcatta
     1021 ttgcctggga actggacata taattactct tctgtgctaa aggaacgttc tgaaatgttt
     1081 aagtatgcag agatgttgat ggcggaagaa gataataaag tatgtgaact tatttttaaa
     1141 caacaagata atttgatttt aaaaataaat gatagatttc ccagaataat tataaagaaa
     1201 taccgaacat
//
LOCUS       DADMJB010000331         1209 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.337, whole genome shotgun sequence.
ACCESSION   DADMJB010000331 DADMJB010000000
VERSION     DADMJB010000331.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1209)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1209)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1209
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.337"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..832)
                     /locus_tag="JN078_004255"
     CDS             complement(<1..832)
                     /locus_tag="JN078_004255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000935594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HAY9043208.1"
                     /translation="MLNVAIENQNGWNYSAPAPHKTGAGISTPKVTRAHNRAEAVFLC
                     VMHSHIQIMVRRAGQPQGWPGSRVTGSANPVRLTTHEISTSAGELINLSLEDVIMATT
                     LSHPDVTIENGRAVTTSISIAEFFGKQHHHVVQKIESFECSELFLTSNFSRVKFEHRG
                     NSYNAYQITKNGFVFLVMGFTGKKAATFKEAYIAEFDRMEAELRQNNTPPADKMIPGD
                     GRTLVVHFDKFGNVEFTETVPDGALVCTLETFRFYLEKQGWTLVNRGAIKNMTVEQLL
                     S"
BASE COUNT          310 a          302 c          283 g          314 t
ORIGIN      
        1 aggaaagcaa ctgctctacg gtcatgtttt taattgcgcc ccggtttaca agagtccagc
       61 cctgtttttc cagataaaac cggaaagtct ccagggtaca gaccagtgcg ccatcaggaa
      121 cggtttcggt gaattcgaca ttgccgaatt tgtcgaagtg aacaaccaga gtgcgaccat
      181 cacccggaat catcttgtca gcaggtgggg tgttattctg gcgcagttcg gcctccatgc
      241 ggtcgaactc agcaatgtag gcttccttga atgtggcggc ttttttgccc gtgaagccca
      301 tcaccaggaa aacgaagccg tttttggtga tttggtaggc gttataagaa ttgccgcggt
      361 gttcgaattt aacccgcgaa aagttgctgg ttaaaaatag ttcagaacat tcgaaggatt
      421 ctattttttg aacaacatgg tgatgctgct tgccaaaaaa ctcagcaatc gaaatagaag
      481 tagtgacggc gcgaccattt tcgatggtta cgtcagggtg agaaagggta gtagccataa
      541 tgacatcctc aagtgataag ttaattaact caccagcaga ggtgctaatc tcatgggtgg
      601 tgagacgcac agggttagca ctaccggtca ctcgagaacc cggccagcct tgcggctgcc
      661 ccgcacgcct caccataatt tgaatgtggc tgtgcattac gcataaaaaa accgcttcag
      721 cgcggttatg cgctcgagta actttcgggg tgctaatccc ggcacccgtt ttatgaggtg
      781 caggtgcact ataattccac ccgttctggt tttcaatagc tacattcaac attttctctt
      841 tcctttcatc accgaagtga attttgtgat gcggtgccta gtgcctccag gtgacgttaa
      901 ccagttaaca attacagtcg gctttcccac ccaaaccaat aaggactaac atgactttta
      961 actgtgccgc gtgcgcttag ccgcattcac cgcatcacaa aattcacttt aaaaagggcg
     1021 gacatcagcc agcaattaaa ccgatgccgc caactggtac ttcacacagc aatgtcgtta
     1081 tttacaaccg gaagcgcact cccaccattt aaatttcaca gacaagaccg actctttatg
     1141 aataccggaa atgcgccttc gtgttgtgcc cggttttatt tcaccacctc cgggctttgg
     1201 tggcctcgg
//
LOCUS       DADMJB010000332         1205 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.338, whole genome shotgun sequence.
ACCESSION   DADMJB010000332 DADMJB010000000
VERSION     DADMJB010000332.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1205)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1205)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1205
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.338"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..607)
                     /locus_tag="JN078_004256"
     CDS             complement(<1..607)
                     /locus_tag="JN078_004256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001458895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY9043209.1"
                     /translation="MKRLQAFKFQLRPGGQQEREMRRFAGACRFVFNRALARQNENHE
                     VGNKYIPYGKMASWLVEWKNATETQWLKDAPSQPLQQSLKDLERAYKNFFQNRAAFPR
                     FKKRGQNDVFRYPQGVKLDQENSRIFLPKLGWMRYRNSRQVTGVVKNVTVSQSCGKWY
                     ISIQTESEVSTPVHPSASMVGLDAGVAKLATLSDGTAFEPVN"
     gene            615..983
                     /gene="tnpA"
                     /locus_tag="JN078_004257"
     CDS             615..983
                     /gene="tnpA"
                     /locus_tag="JN078_004257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HAY9043210.1"
                     /translation="MILWSVKKETDIRRGRHCVFLMHVHLVFVTKYRRQIFDHDATEK
                     LRTYFSNVCADFEAELVEMDGEPDHVHLLINYPPKLAISSLVNSLKGVLWSPGYFASS
                     CGGAPISVIRQYIEQQQTPG"
BASE COUNT          310 a          305 c          270 g          320 t
ORIGIN      
        1 tgtttacagg ctcaaaggct gtgccatctg acagcgtggc gagtttagcc acgccagcat
       61 ccagcccgac cattgatgct gaagggtgaa ccggagttga tacttcactt tctgtctgaa
      121 tactgatgta ccacttaccg caggactggc tgacagtgac atttttcaca acacccgtga
      181 cctgacggct gttccggtag cgcatccagc ccagtttcgg cagaaaaata cggctgtttt
      241 cctgatcgag cttaacgccc tgcgggtagc ggaatacatc attctgtccc cgctttttga
      301 atcggggaaa agcagcccga ttctggaaga agtttttgta agcccgctca aggtctttca
      361 gtgactgttg caatggctgt gacggggcat ctttaagcca ttgcgtttca gtggcatttt
      421 tccactcaac cagccaggaa gccattttcc cgtaagggat gtatttatta ccgacctcat
      481 gattctcatt ctgacgtgcc agagcacgat tgaaaacgaa acgacatgcg cctgcgaagc
      541 gcctcatttc acgctcctgt tgaccaccgg gtcttaactg gaatttaaat gcttgtagtc
      601 gtttcacagg ccaaatgata ctttggtctg tgaaaaaaga aaccgatatc cggcgtggaa
      661 ggcattgtgt tttcctgatg catgttcacc tggtctttgt caccaaatac cgacgtcaga
      721 tttttgacca tgacgcgaca gaaaaactac gcacttactt ttcaaatgta tgtgctgatt
      781 ttgaagctga actggttgaa atggatggcg aaccagatca cgtccatttg ttaattaact
      841 atcctcccaa actggcaata tccagtctgg taaacagcct caaaggcgtt ttgtggagtc
      901 ctggctattt tgccagtagc tgcggaggtg cgccaatatc cgtcatccgc caatacattg
      961 aacaacagca aacacctggt taggtggaaa accacgcctt atatccctgc cctgaaggac
     1021 ggggttttac ggcgcaccgg ataagcctgg agattatcta caccagcatg gacatcattg
     1081 tactatgccc cgtacatgcc ccatcacatc ctcaacatca aagtattaga gccttgcaaa
     1141 ccattatgcg tctcagtttg tctcatctat cttacgcaaa aaaaatagaa ctaatatcaa
     1201 gcggc
//
LOCUS       DADMJB010000333         1198 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.339, whole genome shotgun sequence.
ACCESSION   DADMJB010000333 DADMJB010000000
VERSION     DADMJB010000333.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1198)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1198)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1198
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.339"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            59..1069
                     /locus_tag="JN078_004258"
     CDS             59..1069
                     /locus_tag="JN078_004258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001494590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HAY9043211.1"
                     /translation="MDKITQVLFSDIGKVTTQYVEVPHQELKPHEVRIAPVFYGICGS
                     DLHVLKGGHPFAKPPVVPGHEIAARVTEVGSDVKNVQPGDHVVVDPIMACMECRACKA
                     GRFNLCEPPQVASFRAPGFARSQHIVPARNCHVAPASLPLKVLAFAEPAACARHCVNR
                     MPKASLESVLVIGAGTIGLSIVQALRIMGAGKITVIEPDAAKRALALKLGAAEVWAPG
                     ELAADVRFTGAIDVVAAQATLNDACTRVYAGGTVVCMGVPSGPREIPLPMMQRFERDL
                     LNSGMYIPEDFDAVIEWLADGRFDTSELVTDLFAIEDAAAAFERAQQNDSIKVMLQFA
                     PE"
BASE COUNT          283 a          294 c          324 g          297 t
ORIGIN      
        1 tcgatgaagg tatcgcgcaa cgctaatccc ctatggatat cgattctgga gaataacaat
       61 ggataaaatt acccaggttt tattttcaga tattgggaaa gtcaccactc aatatgttga
      121 agtaccacac caggaactta aaccgcacga agtgcggatt gcgcctgtgt tctatgggat
      181 atgcggttcg gatctgcatg ttctgaaagg cggtcatccg tttgccaaac cacctgtcgt
      241 ccccggtcat gaaattgcag cgcgcgttac ggaagttggc agcgacgtta aaaatgtaca
      301 gccgggcgat catgttgtgg tcgatcccat catggcttgc atggaatgcc gagcctgcaa
      361 agcaggacgt tttaatcttt gtgaaccacc gcaggttgct agttttcgcg caccgggctt
      421 tgctcgctca caacacattg ttcctgcgcg taattgccat gtcgcaccag cctctttacc
      481 gctaaaagtg ttggcctttg ccgaaccggc ggcttgtgcc cgtcactgcg ttaaccgaat
      541 gccgaaagct tctctggaaa gcgtactggt aattggtgcc ggaacgatag gcttatccat
      601 cgtgcaggca ctgcgcatta tgggggcagg taagattacc gtgattgaac ctgacgctgc
      661 caaacgcgcg ctggcgttaa agctgggcgc agcagaagtt tgggcaccag gtgagctggc
      721 cgcagatgtg cgatttacgg gggcgattga tgtcgttgca gcgcaggcca cgcttaacga
      781 tgcatgtacc cgtgtatatg ccggaggcac cgtcgtgtgc atgggcgtac caagtgggcc
      841 gcgtgaaata ccattaccga tgatgcaacg tttcgagcgt gacttgctca actctggcat
      901 gtacatccct gaagatttcg atgctgttat cgaatggctg gcggatgggc ggtttgatac
      961 cagtgaactg gttaccgatt tatttgccat tgaggatgca gcggcggcat ttgaacgcgc
     1021 gcagcaaaat gactccataa aggtcatgct gcaatttgcg ccggaatgat tttctaaatc
     1081 tctgtctggc gctgcgtcac gtcagcgcca ccctacaaca attaaaaagg acactgcgat
     1141 gagtcaaatc accagtcctg caacttattc aattagtcgg ccacaggacg taattgat
//
LOCUS       DADMJB010000334         1192 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.340, whole genome shotgun sequence.
ACCESSION   DADMJB010000334 DADMJB010000000
VERSION     DADMJB010000334.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1192)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1192)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1192
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.340"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..77)
                     /locus_tag="JN078_004259"
     CDS             complement(<1..77)
                     /locus_tag="JN078_004259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HAY9043212.1"
                     /translation="MSKVGINGFGRIGRLVLRRLLEVKS"
     gene            266..796
                     /gene="cybB"
                     /locus_tag="JN078_004260"
     CDS             266..796
                     /gene="cybB"
                     /locus_tag="JN078_004260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415935.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b561"
                     /protein_id="HAY9043213.1"
                     /translation="MENKYSRLQISIHWLVFLLVIAAYCAMEFRGFFPRSDRPLINMI
                     HVSCGISILVLMVVRLLLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGL
                     VMMYNRGNPWFAFGLTMPYASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHY
                     FWKDNTLLRMMPRKRS"
     gene            1041..>1192
                     /locus_tag="JN078_004261"
     CDS             1041..>1192
                     /locus_tag="JN078_004261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043214.1"
                     /translation="MKKLALILFMGTLVSFYADAGRKPCSGSKGGISHCTAGGKFVCN
                     DGSISAS"
BASE COUNT          319 a          258 c          269 g          346 t
ORIGIN      
        1 ttgcttttga cttcaagtaa tcgacgcaac accagtcgac cgatacgacc aaaaccgtta
       61 ataccaacct tactcatggt tttctcctgt caggaacgtt cggatgaaaa ttgatccttt
      121 ccaggcttag cccaggattg tgggatgggc aatctccatt cttacagtga aacgtaacgt
      181 actgaaaacg ggtgaacaat atttaatgaa attttgagaa aagcccgtta tgttaacgga
      241 aaattatgtt aaagcaggaa atgttatgga aaataaatac tcaaggttac aaatcagcat
      301 tcactggctg gtctttttgc tggttatcgc agcgtattgc gcaatggagt ttcggggttt
      361 cttcccacgt agcgatcggc cactcatcaa catgattcat gtttcctgcg gcatctcaat
      421 tctcgtgctg atggtcgttc gtcttttgtt aaggctgaaa tacccaaccc cgccgattat
      481 acctaagcca aaaccgatga tgacgggact ggcgcatttg ggacatttgg tgatttatct
      541 cctgtttatt gcgctgccag tgattggttt ggtgatgatg tataaccggg gcaacccgtg
      601 gtttgcgttt ggtttgacga tgccttacgc ttcagaggcc aatttcgaac gggttgatag
      661 cttaaagtcg tggcatgaaa cgctggcgaa tctgggatat tttgtcatcg ggttgcacgc
      721 tgcggctgca ctggcacacc actatttctg gaaggacaac acacttctac gcatgatgcc
      781 gcgtaaacgt tcctgaagga tatttaaaga aaacgcctgt actaaaaccg acccgtggta
      841 caggcgaaga atacgggtct acatcggaag cgcctattat atttatttgt atgacaaata
      901 aaaccataat ccttgcccat acgtccatct ggcttatttt taatcaattc acccgatctt
      961 tgatctcatc aacggtatca aaataaacca gcgtataacg ttcaaatcga acataagatt
     1021 cgataaacca tggaggttat atgaaaaaac tggcacttat tttgtttatg ggaacgcttg
     1081 tttcctttta tgccgatgcc gggcgcaaac cctgttctgg ttcgaaaggg gggatctcac
     1141 actgtacggc aggcggcaaa tttgtctgta atgatggttc tattagtgcc tc
//
LOCUS       DADMJB010000335         1160 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.341, whole genome shotgun sequence.
ACCESSION   DADMJB010000335 DADMJB010000000
VERSION     DADMJB010000335.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1160
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.341"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..925
                     /locus_tag="JN078_004262"
     CDS             <1..925
                     /locus_tag="JN078_004262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000878026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS110-like element ISEc11 family transposase"
                     /protein_id="HAY9043215.1"
                     /translation="RRQDFLTFFGNREPCLIGMEACGGSQHWARELTKLGHKVRLLQA
                     RFVKAFVMGNKNDVMDARAIWMAVQQPGKEIAVKTEEQQSVLVLHRTRMQLVKFRTAQ
                     INALHGTLLEFGETIHKGRAAMEREFPEALERMKERLPPYLIMVLENQYNRLNELDSL
                     IEDIEKQLTSVARQNETCKRLLDIPGVGPLIATAAVATMGEASAFKSGREFAAYVGLV
                     PKQTGSGGKVRLLGISKRGDTYLRTLFIHGARAVALVAKEPGPWITELKKRRPASVAI
                     VAMANKLARTVWAITAHDRKYDRNHVSIRPY"
BASE COUNT          324 a          262 c          333 g          241 t
ORIGIN      
        1 gcgtagacag gattttctga cgttcttcgg caaccgtgag ccatgcctga ttggtatgga
       61 ggcctgtgga ggttctcagc actgggcacg ggaactgaca aaacttggtc ataaagtccg
      121 gttgttgcag gcccgcttcg ttaaggcatt cgtcatgggc aataagaatg atgtgatgga
      181 tgcccgggct atctggatgg cggttcagca gccgggtaaa gaaatcgccg taaaaacaga
      241 agaacagcag tcggtactgg ttctgcaccg tacccgcatg caactggtga agttccggac
      301 cgcacaaatt aatgccctgc acgggacgtt actggagttt ggtgaaacca tccacaaagg
      361 ccgggcagcg atggagcggg agttccccga agcactggaa cggatgaaag agagactgcc
      421 accgtatctc attatggttc tggaaaacca gtacaaccga ctgaatgagc tggactcact
      481 gatagaggat attgaaaaac agcttaccag cgtggcgagg cagaatgaaa cctgtaagcg
      541 gttgctggat attcctggcg ttggaccact tattgcgacg gcagcggtgg ccaccatggg
      601 ggaagcatca gcgtttaaat cggggcgaga gttcgccgca tatgttggtc tggttccaaa
      661 acaaactggc tccggaggga aagtacgtct gctggggata agcaaacgtg gtgacactta
      721 tctcaggaca ttatttatcc acggtgcaag agcggtggca ttagtagcta aagagcctgg
      781 cccgtggata accgaactga aaaaacgtcg tccagccagt gtggcaatcg tcgccatggc
      841 aaacaagctg gcacgaacag tatgggcgat aaccgcccat gaccgtaagt atgacaggaa
      901 ccacgtcagt atcagaccat attaatcgct gataccatta aacaatgaac tcttaacaaa
      961 agggtgaatg ctgaaaggtt gctatggcgg ccagagtgat gacaaagaca ggtaagaccg
     1021 tgactcacta aacctgaaca gtattttggg cttgaagtcc gccgtgaaaa taaggggtga
     1081 gtcggcgaat tacatagggg ctcgcagcgt tacggctgca ataaagccgg atataaagct
     1141 gcaacctacc cgtcatgtca
//
LOCUS       DADMJB010000336         1153 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.342, whole genome shotgun sequence.
ACCESSION   DADMJB010000336 DADMJB010000000
VERSION     DADMJB010000336.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1153)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1153)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1153
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.342"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(1..261)
                     /locus_tag="JN078_004263"
                     /pseudo
     CDS             complement(1..261)
                     /locus_tag="JN078_004263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611134.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(376..1014)
                     /locus_tag="JN078_004264"
     CDS             complement(376..1014)
                     /locus_tag="JN078_004264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043216.1"
                     /translation="MINGVSLQGTAGYEAHTEEGNVNVKKLLESLNSKSLGDMDKDSE
                     LAATLQKMINPSGGDGNCSGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQI
                     DSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLD
                     VQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC"
BASE COUNT          337 a          284 c          175 g          357 t
ORIGIN      
        1 caagcgctgt aactctttta tttgttttat agcggcagcc agttctgagg caggaacgac
       61 atcctctccg gcagcaacag cagtgagact tccttccaga tattattttt tccacttaag
      121 caacaggctg ggctgaatac catgcaaacg cgccacatgg gacaccgtca tgccaggctc
      181 cattgtctgc tgaataatgg caattttttc ctgaggagtt ttacgtttac gaagctccag
      241 ccccagcaaa gttccagtca tctcaaaatt agaactagtg ttagacatat atccaagcct
      301 atctcttatt ttaagataca tccactgtct ggcgtttcaa ggggccggct caaatctatg
      361 tacaggctct cagcatcagc aaagcctctt actcttccaa ctactactgt tagcatagtg
      421 atcaaattcc tgatcagata catgaattac ctgaaccgaa ctattttcat ctacaaatgc
      481 atctggcgat ttttctacag gatcataaag attaaatccc tttcctgttt gaacatccaa
      541 aaacataatt ttttcaccat cgttaaatcc agctatccaa tgagtggcct gttcaataga
      601 aatcattact acacttcctt ttgaagtgtt ttgtaaaata ttttctgcaa tacgctcacg
      661 aaatttacta taagtttcat taggatgtga cactatgcct tcactatcaa tttgctctaa
      721 atgcctatga aaaaatccgg tcatatactc tgatatttca ttaggtacgg gagcctctct
      781 tactccatac cctaacatag ccatacaagc atgaagcgca caccctgaac agttaccatc
      841 cccaccagac ggatttatca ttttctgtaa agtcgctgcc aattcagaat ctttatccat
      901 atcaccaaga cttttagagt ttaaagattc cagcaatttt ttaacattta catttccctc
      961 ctctgtatgt gcctcatatc cagcagttcc ctgtaacgac accccattaa tcatattgta
     1021 tcctgacagt atatatactc actatatttt cttcataaca aatatccctc tgatatgaca
     1081 acaaaaaacg gagccggatt cctgtttttg tgaactgcag ctattcgagt ctaaaaagtg
     1141 atccacttac cac
//
LOCUS       DADMJB010000337         1153 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.343, whole genome shotgun sequence.
ACCESSION   DADMJB010000337 DADMJB010000000
VERSION     DADMJB010000337.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1153)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1153)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1153
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.343"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            12..1028
                     /locus_tag="JN078_004265"
     CDS             12..1028
                     /locus_tag="JN078_004265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5-like element IS5 family transposase"
                     /protein_id="HAY9043217.1"
                     /translation="MFVIWSHGTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQIL
                     PWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLF
                     ARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIE
                     APSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQL
                     GNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVRTLKQHPRKSKTAINI
                     EYMKASIRAKVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRADQMIRQW
                     ERSH"
BASE COUNT          321 a          304 c          306 g          222 t
ORIGIN      
        1 gatatgagat catgtttgtc atctggagcc atggaacagg gttcatcatg agtcatcaac
       61 ttaccttcgc cgacagtgaa ttcagcagta agcgccgtca gaccagaaaa gagattttct
      121 tgtcccgcat ggagcagatt ctgccatggc aaaacatggt ggaagtcatc gagccgtttt
      181 accccaaggc tggtaatggc cggcgacctt atccgctgga aaccatgcta cgcattcact
      241 gcatgcagca ttggtacaac ctgagcgatg gcgcgatgga agatgctctg tacgaaatcg
      301 cctccatgcg tctgtttgcc cggttatccc tggatagcgc cttgcctgac cgcaccacca
      361 tcatgaattt ccgccacctg ctggagcagc atcaactggc ccgccaattg ttcaagacca
      421 tcaatcgctg gctggccgaa gcaggcgtca tgatgactca aggcaccttg gtcgatgcca
      481 ccatcattga ggcacccagc tcgaccaaga acaaagagca gcaacgcgat ccggagatgc
      541 atcagaccaa gaaaggcaat cagtggcact ttggcatgaa ggcccacatt ggtgtcgatg
      601 ccaagagtgg cctgacccac agcctagtca ccaccgcggc caacgagcat gacctcaatc
      661 agctgggtaa tctgctgcat ggagaggagc aatttgtctc agccgatgcc ggctaccaag
      721 gggcgccaca gcgcgaggag ctggccgagg tggatgtgga ctggctgatc gccgagcgcc
      781 ccggcaaggt aagaaccttg aaacagcatc cacgcaagag caaaacggcc atcaacatcg
      841 aatacatgaa agccagcatc cgggccaagg tggagcaccc atttcgcatc atcaagcgac
      901 agttcggctt cgtgaaagcc agatacaagg ggttgctgaa aaacgataac caactggcga
      961 tgttattcac gctggccaac ctgtttcggg cggaccaaat gatacgtcag tgggagagat
     1021 ctcactaaaa actggggata acgccttaaa tggcgaagaa acggtctaaa taggctgatt
     1081 caaggcattt acgggagaaa aaatcggctc aaacatgaag aaatgaaatg actgagtcag
     1141 ccgagaagaa ttt
//
LOCUS       DADMJB010000338         1134 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.344, whole genome shotgun sequence.
ACCESSION   DADMJB010000338 DADMJB010000000
VERSION     DADMJB010000338.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1134)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1134)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1134
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.344"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            1..184
                     /locus_tag="JN078_004266"
                     /pseudo
     CDS             1..184
                     /locus_tag="JN078_004266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611999.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            201..719
                     /locus_tag="JN078_004267"
                     /pseudo
     CDS             201..719
                     /locus_tag="JN078_004267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          329 a          264 c          250 g          291 t
ORIGIN      
        1 agataacgga attatcgtcg gtcgtgacag actggcacgt cttcgtaagg agctgaggct
       61 gcactgtaag cagaaacgca agttcagggc gaccacaaac tctgaccaca atctgccggt
      121 tacgccgaat ctgctgaatc agaactttac gcccacagca cctaatcagg tctgggtcgc
      181 agattcagtt gtccaggcct tccgaaatca accgactgaa ggcgctggtc gcgaaactgc
      241 agcgtatgca gttcggtaaa agctcagaaa aacttcgcgc aaaaaccgaa cggcggatac
      301 aggaagcaca ggagcgaatc agcgcacttc aggaggaaat ggcggaaaca ctgggtgagc
      361 aatatgaccc ggtactgcca tcttccctgc gccagtcttc agcccgtaaa ccgttaccag
      421 cctcacttcc ccgtgccccc cgggtcatcc ggccggaaga ggaatgctgt ccggcctgtg
      481 gtggtgaact cagtccactg ggatgtgatg tgtcagagca gctggagctt atcagcagcg
      541 cctttaaggt tatcgaaaaa caacgcccta aactggcctg tcgccggtgc gaccatatcg
      601 tgcaggcacc ggtgccttca aaacccattg cacgcagtta tgccggagcg gggcttctgg
      661 cccatgttgt taccggaaag tatgcagacc atctgccatt ataccgccaa agtgatctac
      721 tattccacac agctatttag ctctcttttt gttgagctcc catgattctt tcatttattg
      781 ttactaatta ttttatgtta tcatgatgtt agaacacgct ctgctctgtg tctctatttt
      841 atctatcata ttctgaggat taactacata acaaggcgca agatatatat ccaaaaacaa
      901 ataataccgt tgcaataatt cctttcagta aaggaggtgt gattaatttc aggggatttc
      961 agagtgaaaa ttgtacaaca tattgaaata tgttcatttc gttataatac acacaagaaa
     1021 atattaagtt aatattctaa ataaccatag ataaaaatgc acataatggg gaatatttta
     1081 tgaaaatacc tgaagcagta aatcatatta atgttcagaa taatattgat cttg
//
LOCUS       DADMJB010000339         1123 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.345, whole genome shotgun sequence.
ACCESSION   DADMJB010000339 DADMJB010000000
VERSION     DADMJB010000339.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1123)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1123)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1123
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.345"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            76..1020
                     /gene="lpxM"
                     /locus_tag="JN078_004268"
                     /gene_synonym="msbB"
     CDS             76..1020
                     /gene="lpxM"
                     /locus_tag="JN078_004268"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858371.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HAY9043218.1"
                     /translation="MKKYKSEFIPEFKKNYLSPVYWSTWFLLGMIAGISMFPPSFRDP
                     VLAKIGRWAGRLSKKARRRATINLSLCFPEKNDTEREIIVDKMFATALQSIVMMAELA
                     IRGPEKFQKRVFWKGLEILEEIRHNNRNVIFLVPHGWSVDIPAMLLAAQGKKMAAMFH
                     QQRNPVIDYVWNSVRRKFGGRLHAREDGIKPFIQSVRQGYWGYYLPDQDHGPEYSEFA
                     DFFATYKATLPIIGRLMNISQAMIIPLFPVYDEKKHLLTIEIRPSMDACIASADNKMI
                     ARQMNKTVEILVGPHPEQYVWVLKLLKTRKSNEADPYP"
BASE COUNT          348 a          211 c          252 g          312 t
ORIGIN      
        1 atttaaatta aggtttgatg tatcctctga ataaaacagt aatgataatt ttggtagagg
       61 cattcgcact aaataatgaa aaaatataaa tctgagttta ttcctgaatt taagaaaaat
      121 tacctttccc ctgtttactg gtctacatgg ttccttttgg gaatgattgc aggtatttca
      181 atgtttcccc cttcattcag agatcctgtc ttggcaaaaa tagggcgttg ggcgggcaga
      241 ttgagcaaaa aagctcgtcg cagggcgacg attaatttat cgctttgttt cccagaaaag
      301 aatgatacag aacgggaaat aattgtcgac aaaatgtttg ccacagcatt gcaatccata
      361 gtgatgatgg cagaactggc aattcgtggt ccggaaaagt tccagaaacg agtgttctgg
      421 aaaggcctcg aaattcttga ggaaattcga cacaataata gaaatgtgat ttttctggtt
      481 ccccatggct ggagcgtgga tattcctgca atgttgctgg cagctcaggg aaaaaaaatg
      541 gccgccatgt ttcatcagca acgaaatcca gtgattgatt atgtctggaa ttcagtacgg
      601 cgtaaattcg gggggcgctt acatgcccgg gaggatggga taaaaccatt tattcagtca
      661 gtacgccagg gatactgggg atattacctc ccagatcagg atcatggtcc tgaatacagt
      721 gaatttgctg atttttttgc gacctataaa gcgacattac caatcattgg acgtctgatg
      781 aacatcagtc aggctatgat tataccactt ttcccggttt atgatgaaaa aaaacatctc
      841 ctgactattg aaattcggcc atcaatggat gcttgcattg ccagcgcgga caataaaatg
      901 attgcccgac aaatgaacaa aacagtggaa attttggtgg ggccacatcc ggaacagtat
      961 gtctgggttt taaaattgtt aaaaacacgc aaatcaaacg aagcggaccc gtacccttga
     1021 aattataaag tataagtatt tccactagtt gtttgtaagc gtacagcctg aaccgtctgg
     1081 tcagaatctg acgaattaga caaagtggtg tccaccaaat aag
//
LOCUS       DADMJB010000340         1114 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.346, whole genome shotgun sequence.
ACCESSION   DADMJB010000340 DADMJB010000000
VERSION     DADMJB010000340.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1114)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1114)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1114
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.346"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(73..276)
                     /locus_tag="JN078_004269"
     CDS             complement(73..276)
                     /locus_tag="JN078_004269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1737 domain-containing protein"
                     /protein_id="HAY9043219.1"
                     /translation="MVERTMAFKHYDVVRAAPPSDLAEKLTHKLKEGWQPFGSPVAIT
                     PYTLMQAIAAEGDVVVSGATEPE"
     gene            522..857
                     /gene="iraM"
                     /locus_tag="JN078_004270"
     CDS             522..857
                     /gene="iraM"
                     /locus_tag="JN078_004270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraM"
                     /protein_id="HAY9043220.1"
                     /translation="MKWIVIDTVIQPSCGISFSVIWSKIKLIIWYQSDAFLPPESIFT
                     LTHTGIMLNNKVLPVTIYNVVPFNKTFWNLIKNSQECPTNTDNVLNECFNNRCTLQIC
                     PYGLKQQSP"
BASE COUNT          365 a          270 c          193 g          286 t
ORIGIN      
        1 ccggtgcatt tagtcccact gccagactgt cttttatggc ctggaatgcc gggccagtac
       61 gatgacgtag tatcactccg gctcagttgc accactgacc accacatcac cttctgctgc
      121 aatcgcctgc atcagggtat aaggggttat ggccaccgga ctaccaaacg gctgccagcc
      181 ctctttcagt ttatgtgtca gcttttccgc aagatctgac ggcggcgccg ccctgacaac
      241 atcatagtgt ttaaatgcca tggttctttc caccatctga aaaataattc tttaaaatac
      301 ctgacatgta atacagaaaa aacacaaaac cataccttaa ataaaaacct gattatcaag
      361 cagatatgca tggataaact acaagacgag atataaacca ccctgcattt aaataaacaa
      421 taaacaacat cagaaaaata attctgctct atggtttaca ttcaaaaata tcatttatac
      481 ttttcagaac atcaccagca aggcataaac aaggaaacta aatgaagtgg attgtgattg
      541 atacagttat ccagccatca tgcggaatat ctttttcagt catatggagt aaaataaaat
      601 taataatctg gtatcaatcg gatgctttct tacctcctga aagtatattt acactgactc
      661 acacaggcat catgctcaat aacaaagtgc tacctgtaac catttacaac gtagtaccat
      721 tcaataaaac attctggaat ttaatcaaaa acagccagga atgccctaca aatacagata
      781 acgtattgaa tgaatgcttt aataaccgtt gcactctgca aatatgtcct tatggactaa
      841 aacaacaaag tccataagga gtttactcac atctgacaaa atcaatataa acagcccctc
      901 cggagagggg ctggagagtg gcgctatgtg ccattgcatg gtgccgggtg cctcccggtg
      961 aattcagtac cagcacctga atccgcgatt atcccatata cctactcgct gattgcccct
     1021 ccgcacaggg ggattcacca tgccagtttc ttttaacaaa ctccccgcaa accagacaac
     1081 agtcaaccgc ctgaattgtg aagtatttaa aaat
//
LOCUS       DADMJB010000341         1095 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.347, whole genome shotgun sequence.
ACCESSION   DADMJB010000341 DADMJB010000000
VERSION     DADMJB010000341.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1095)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1095)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1095
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.347"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..976
                     /locus_tag="JN078_004271"
     CDS             <1..976
                     /locus_tag="JN078_004271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000015372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HAY9043221.1"
                     /translation="YATDPAGNRLPDPELHPDSTLSMWPDNRIARDAHYLYRYDRHGR
                     LTEKTDLIPEGGIRTDDERTHWYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVA
                     KRVWRRERDLTGWMSLSRKPEVTWYGWDGDRLTTIQNDRTRIQTVYQPGSFTPLIRVE
                     TATGELAKTQRRSLADALQQSGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRW
                     LASCGLTVAQMKNQMDPVYTPARKIHLYHCDHRGLPLVLISTEGATEWCAEYDEWGNL
                     LNEENPHHLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGDISLRIRLG"
BASE COUNT          263 a          302 c          337 g          193 t
ORIGIN      
        1 gtatgccaca gacccggcag gtaaccgcct gcccgacccg gagctgcacc cggacagcac
       61 cctcagcatg tggccggata accgtatcgc ccgtgacgcg cactatcttt accggtatga
      121 ccgtcacggc aggctgacag agaaaaccga cctcatcccg gaagggggta tccgcacgga
      181 tgatgagcgc acccactggt accattacga cagtcagcac cggctggtgc actacacgcg
      241 gacacaatat gcagagccgc tggtcgaaag tcgctatctt tacgacccgc tgggccgcag
      301 ggtggcaaaa cgggtatggc ggcgtgaacg ggacctgacg ggctggatgt cgctgtcacg
      361 gaaaccggaa gtgacctggt acggctggga cggcgaccgg ctgaccacaa tacagaacga
      421 cagaacccgc atccagacgg tttatcagcc gggaagcttc acgccactca tcagagttga
      481 aaccgccacc ggtgagctgg cgaaaacgca gcgccgcagc ctggcggatg cccttcagca
      541 gtccggcggc gaagacggtg gcagtgtggt gttcccgccg gtgctggtgc agatgctcga
      601 ccggctggaa agtgaaatcc tggctgaccg ggtgagtgag gaaagccgcc gctggctggc
      661 atcgtgcggc ctgaccgtgg cgcagatgaa aaaccagatg gacccggtgt acacgccggc
      721 gcgaaaaatt cacctgtacc actgcgacca tcgcggcctg ccgctggtgc ttatcagcac
      781 ggaaggggca acagaatggt gcgcagaata cgatgagtgg ggcaacctgc tgaatgaaga
      841 gaacccgcat catctgcagc agctcattcg cctgccgggg cagcagtatg atgaggagtc
      901 cggcctgtat tacaaccgcc accgctatta tgacccgctg cagggggata tatcactcag
      961 gatccgattg ggctgaaggg gggatggaat ttttatcagt atccgctgag cccggtgaat
     1021 agcatggatc cattaggatt atatgaattt aaatcaaaaa atatagatga tattggaata
     1081 tttgcattgg caatg
//
LOCUS       DADMJB010000342         1092 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.348, whole genome shotgun sequence.
ACCESSION   DADMJB010000342 DADMJB010000000
VERSION     DADMJB010000342.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1092)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1092)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1092
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.348"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(198..464)
                     /locus_tag="JN078_004272"
     CDS             complement(198..464)
                     /locus_tag="JN078_004272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043222.1"
                     /translation="MLTQTIFPCLPQKQENIILEVSNPVLLSSTVTTDGYTVFNKKAA
                     IYELQIPATNRTKTLKFTATEMQWLTKINEVEIVEKQSQRHSNI"
     gene            complement(646..1044)
                     /locus_tag="JN078_004273"
                     /pseudo
     CDS             complement(646..1044)
                     /locus_tag="JN078_004273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612066.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
BASE COUNT          281 a          223 c          226 g          362 t
ORIGIN      
        1 cgtccctgca ctcgaataat ggtgaagaaa gcatgatgaa tatatcacga taacgttcag
       61 tatgtatcga ggatagatgg agttactcct ctctgaaata gaattactgc tctacttttt
      121 ctgtttccag aaattattag taacaaaccc tgatatattc ttttgaaaat ggagcttaaa
      181 cgagtctgaa attaacttca gatattagaa tgccgttggc tttgtttttc aacaatttct
      241 acttcattta tctttgtcaa ccattgcatt tctgtagcag tgaatttcaa cgttttcgtc
      301 cggttggtag caggtatttg taattcgtat atagctgctt ttttattgaa aacagtatat
      361 ccatctgtag taacagtaga agataataat acaggatttg acacttcaag gatgatattt
      421 tcttgttttt gtggaaggca agggaatata gtttgtgtaa gcatattgct tccttatgtt
      481 atattttagt aaagaattta ttttttacat tatagtcggc taaatgaagt ttactgtaaa
      541 aaaacgatac ttttttcgta agcgatgaga tgtggagcca gaaaaatggc tgcgttacgt
      601 cattgaactg tccttgaccc acgatattca gacagtcgtt gtatcttaag ttgacattac
      661 ccgctgacgt cgatattccc ttggtgagag ataacccaac gcactatgcg gatggttttc
      721 attgtaatgc tcgatcgcca ctgcaaggtt atgcaatgcc gttcttggtt tcggcatgaa
      781 cgcgatgcag tcttccttca tcgttttcac gaaccgttct gctattccat tactctgagg
      841 gctactgact gccgtcgtgc agggctccag attcaactct ctggcgaact gccgtgtttc
      901 atgagccgta taagccgaac cgttatcggc cactggattg gccgttccgg tcctttatcg
      961 ccatatcgct gacatgacat cctgcaccgt tgctttgtca taatctcccg tgcctgctgc
     1021 ccagtctatg gcttcacgat cgcaatatgg aacgtaacgc tgtcatcggg agaatcgtca
     1081 atgcggcatt cg
//
LOCUS       DADMJB010000343         1085 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.349, whole genome shotgun sequence.
ACCESSION   DADMJB010000343 DADMJB010000000
VERSION     DADMJB010000343.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1085)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1085)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1085
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.349"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..772)
                     /locus_tag="JN078_004274"
     CDS             complement(<1..772)
                     /locus_tag="JN078_004274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HAY9043223.1"
                     /translation="MLPTNNNHRLISNSFSTYSIDTSRAYENYLTHWTEWKNNRIQEE
                     QRDIAFQRLVSCLQNQETNLDLSELGLTTLPEIPPGIKSINISKNNLSLISPLPASLT
                     QLNVSYNRLIELPALPQGLKLLNASHNQLITLPTLPISLKELHVSNNQLCSLPVLPEL
                     LETLDVSCNGLAVLPPLPFSLQEISAIGNLLSELPPLPHNIHSIWAIDNMLTDIPYLP
                     ENLRNGYFDINQISHIPESILNLRNECSIDISDNPLSSH"
BASE COUNT          313 a          154 c          253 g          365 t
ORIGIN      
        1 catgggatga caatgggtta tcactaatat ctattgaaca ttcattcctc agattaagaa
       61 tgctttccgg gatatgactt atctgattta tgtcaaaata accgttcctt aaattttccg
      121 gcaggtatgg aatatcggtt aacatattgt cgattgccca tatggagtga atgttgtgag
      181 gtagaggggg gagttcacta agaagattcc ctattgcgct aatctcttgt aaagaaaatg
      241 gtaaaggtgg taaaactgcc agcccattac atgatacatc taatgtttcc agtagttctg
      301 gtaaaacagg aagagaacat aattgattat ttgagacatg aagctccttc aaagatatgg
      361 ggagtgtggg tagtgtgatt agttgattgt gggacgcatt caataattta agtccttgag
      421 gcaaagcagg cagttcaata agtctgttat agctgacatt aagctgtgta agggacgcag
      481 gcaatgggga gattaagctt aaattatttt tacttatatt aattgattta attcccgggg
      541 ggatttcagg taatgttgtc aggcctaatt cagacaagtc taggttcgtc tcttggtttt
      601 gtagacatga tactagtcgc tgaaaagcga tgtctcgttg ttcttcttgt atgcggttat
      661 ttttccattc agtccaatgg gttagataat tttcatatgc gcggctagtg tcgattgaat
      721 aagtggagaa cgaatttgaa attaatctgt gattgttatt tgtcgggagc ataaatatca
      781 gggcgtattc tttatgttga gaggtgttgg attctttttt atctgctttg caatgttatt
      841 ggttcccttc agcagtagac aggaacttct ggaggaggcg gatatatagt ttgtgtaagc
      901 atattaactc catatgttat atattgaaga acttctgctt tacactatcc taaactggat
      961 cggtttaatg taaaaaaacg atactttttg ggggaggggg caatttttcc ttaaggtatg
     1021 aaaaaaggag ctgaagctat ataatagcta ttaatgccac tggtatcagt gaatcatgta
     1081 tataa
//
LOCUS       DADMJB010000344         1061 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.350, whole genome shotgun sequence.
ACCESSION   DADMJB010000344 DADMJB010000000
VERSION     DADMJB010000344.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1061)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1061)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.350"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..1045)
                     /locus_tag="JN078_004275"
     CDS             complement(<1..1045)
                     /locus_tag="JN078_004275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000017331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043224.1"
                     /translation="MSGWFDLTLNQRVYNQDGKTANAVVTYDGNVGEQYNDAWFGDSA
                     NENIMQFSDIYLTTRGFLPFAPEADFWVGKHKLPQYEIQMLDWKTLTTDVAAGVGIEN
                     WALGVGLFDMSLSRDDVDVYSRDFSRTSQMNTNSVDVRYRNIPLWDDATLSLMAKYSA
                     PNKTDQQQDNENDNSYFEMKDSWMLTSVLRQNLQRDTFNEFTLQVANNSYASSFASFS
                     DASNTMAHGRYYYGDHTNGIAWRLISQGEMYLTDNIIMANALVYSHGEDVYSYESGAH
                     SDFDSIRTVIRPAWIWNTWNQTGLELGWFKQQNKTQQGVTLNESAYKTTLWHALKVGE
                     SILGSRPEIRFYGT"
BASE COUNT          298 a          258 c          205 g          300 t
ORIGIN      
        1 acgttccata gaagcgaatt tctggtcgtg aacctaaaat gctttcaccc actttcaatg
       61 catgccagag tgtcgtttta taagccgatt catttagtgt tacaccctgc tgagttttgt
      121 tctgttgctt aaaccagcct aattcaagcc ccgtctgatt ccatgtattc cagatccagg
      181 ccggtcttat tacagtgcga atactgtcaa aatcactatg agcaccactt tcataactat
      241 aaacatcttc gccgtgagaa tagacaagcg cgttagccat aataatattg tcagtaagat
      301 acatctcgcc ctgagagatt aaacgccagg cgatcccatt ggtatgatca ccatagtaat
      361 agcgaccatg cgccatcgta ttactggcat ctgagaaact ggcaaaactg ctggcatagg
      421 aattattggc aacctgtaac gtaaattcat taaacgtatc gcgttgcagg ttttgccgta
      481 aaacagaagt cagcatccag ctatctttca tttcaaaata actgttgtca ttttcgttat
      541 cttgttgttg atccgtttta ttaggtgcgg aatatttagc cattaatgat aatgtcgcat
      601 catcccataa cgggatattg cgataacgaa catccacaga attggtattc atctggctgg
      661 tacgcgaaaa atcacgagag taaacatcga catcatcacg gcttaaggac atatcaaaca
      721 gccctacacc aagtgcccag ttttcaatcc ccacacccgc ggcgacatcc gtggttaagg
      781 ttttccagtc cagcatctgg atctcatatt gcgggagttt atgtttgccg acccagaagt
      841 ctgcctctgg tgcgaagggt aaaaaacctc gcgttgtcag gtaaatatcg ctgaactgca
      901 tgatattttc attggcactg tcaccaaacc aggcatcgtt atactgctca cccacgttgc
      961 catcataggt aacgaccgca tttgccgttt taccgtcctg attataaaca cgctgattta
     1021 aggtcaggtc aaaccaaccg ctcatctcat taccaaaacg t
//
LOCUS       DADMJB010000345         1049 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.351, whole genome shotgun sequence.
ACCESSION   DADMJB010000345 DADMJB010000000
VERSION     DADMJB010000345.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.351"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            264..1049
                     /locus_tag="JN078_004276"
                     /pseudo
     CDS             264..1049
                     /locus_tag="JN078_004276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226013.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
BASE COUNT          309 a          240 c          246 g          254 t
ORIGIN      
        1 acccttttgc ttttatatct gcgtctaaaa taaaaatgag ccgcaggtta accgcaaaag
       61 ttacatgctc acatagcaaa aagaatagcc aacttcatta tggcttcagt gagatgtatg
      121 gtcgtaggat ttcatacatt gacactggtt atacatacag taaaaatact ctctactgga
      181 gggcattttt tatggcagta cgaaaactca ccactgggaa atggctttgc gaatgttacc
      241 ccgccggacg aagtgggcgt cgtgtgcgta aacaattcgc caccaaaggc gaagcactgg
      301 cttttgagcg ccacacgatg gaagaaaccg aagcaaagcc ctggctgggt gaatcagtgg
      361 atcgtcgaac actgaaagac gtggttgagc tatggttcaa actacatggt aaatctctga
      421 cagctgggca gcatgtctat gacaaattgc tgttgatggt tgacgctctg ggcaatcctc
      481 ttgcaaccga tctcacctct aaaatgtttg cccactatcg agataaacgc ctgacaggcg
      541 ggatctactt cagcgagaaa tggaagaaag gagcaagccc ggtcaccatt aacctggagc
      601 aaagctatct aagtagtgtt tttagcgaac tatcccgtct gggcgaatgg tcgtatccga
      661 acccactgga gaacatgcga aaattcacca tcgcagaaaa agagatggca tggcttaccc
      721 atgagcagat tgttgaattg ctggctgatt gcaaacgtca ggacccaatt ctggcactgg
      781 tagttaagat atgcttaagc acaggcgcac gctagcgtga agccgtaaat cttacccgct
      841 cacaggtgac caaataccga attacctttg tcagaacgaa ggggaagaaa aacagaagca
      901 tccctatcag taaagagctt tacgaagaga tcatggcgct tgatgggttc aatttcttca
      961 cagactgcta ttttcaattt ttatccgtga tggaaaaaac gtctatcgtg ctccctcgcg
     1021 gtcaactcac acacgttctg cgccatacg
//
LOCUS       DADMJB010000346         1048 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.352, whole genome shotgun sequence.
ACCESSION   DADMJB010000346 DADMJB010000000
VERSION     DADMJB010000346.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1048)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1048)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1048
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.352"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..843
                     /locus_tag="JN078_004277"
     CDS             <1..843
                     /locus_tag="JN078_004277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416329.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAY9043225.1"
                     /translation="LLVGYIAWLATAYRMSFSREINLGLAQHEFELFCQPLLNARSQQ
                     CIGVEILLRWNNPRQGRISPDVFIPIAEEHHLIVPLTRYVMAETIRQRHVFPMSSQFH
                     VGINVAPSHFRRGVLIKDLNQYWFSAHPIQQLILEITERDALLDVDYRIARELHRKNV
                     KLAIDDFGTGNSSFSWLETLRPDVLKIDKSFTAAIGSDAVNSTVTDIIIALGQRLNIE
                     LVAEGVETQEQAKYLRRHGVHILQGYLYAQPMPLRDFPKWLAGSQPPPARHNGHITPI
                     MPLR"
BASE COUNT          239 a          265 c          265 g          279 t
ORIGIN      
        1 ttactggtgg gctacatcgc ctggctggcg accgcttacc ggatgagctt ttcccgcgaa
       61 atcaatctgg gcctggcgca acatgagttc gaattgttct gtcagccttt gcttaatgcg
      121 cgcagccagc aatgtattgg tgtagagatt ttgctgcgct ggaacaatcc gcgtcagggc
      181 cggatttcac cggatgtgtt tattcctatc gcggaagaac atcatttaat tgtgccactg
      241 acccgctatg tgatggcaga aaccattcgt cagcgccatg ttttcccgat gagtagtcag
      301 tttcatgttg gcattaacgt cgcacccagc cattttcgcc gtggtgtgct gataaaagat
      361 ctcaatcagt actggtttag cgctcacccg attcagcaac tgatcctcga aatcaccgaa
      421 cgcgatgcct tactggatgt tgattatcgg attgcccgcg agctacatcg taaaaacgtc
      481 aaactggcga ttgatgactt cggcaccggc aacagttcat tttcctggct tgaaacatta
      541 cgtcctgacg tgctgaaaat tgataagtca tttaccgcag ctataggttc tgacgcggtt
      601 aactcgacgg tgaccgatat catcatcgcg ctggggcaaa gactgaatat tgaactggtg
      661 gcggagggcg tggaaacgca agaacaggcg aagtatttgc gccgtcatgg cgtgcatatt
      721 ttgcaagggt atttgtacgc acagccgatg ccgctacgcg attttcccaa atggctggcg
      781 ggcagccaac cgccgcccgc ccggcataat ggacatatca cgcccattat gccgttacgt
      841 taacgctgat atgactttcc gtgtcaaacc ggaatctcta attttgacga ttttcttttt
      901 aggtttaatt ccctgagggc gacgtagcag taaatccgac ggtgaatcac gctgatattc
      961 gcgggttgga taccgcatta cagaggtccg tcatatgagc ctgccacttt cttacgtcgc
     1021 gaatcagctt tgttccgccg tcgccaag
//
LOCUS       DADMJB010000347         1044 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.353, whole genome shotgun sequence.
ACCESSION   DADMJB010000347 DADMJB010000000
VERSION     DADMJB010000347.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1044)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1044)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.353"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(1..1044)
                     /locus_tag="JN078_004278"
                     /pseudo
     CDS             complement(1..1044)
                     /locus_tag="JN078_004278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001591423.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-binding protein"
BASE COUNT          261 a          277 c          247 g          259 t
ORIGIN      
        1 ctggccagtt tttttcaaag taaatacctt taatacacgg ttgcatacgt aaagacttca
       61 cttcggtaat aaaagaacct tgcgaatatt gaatcgttaa tctgtgattt ttgtcttcag
      121 cacgttcaga gcgaaaacgc cattcttctt ttgcgccgcg acgagtttgt gggaggcatt
      181 tgccttgtgg atcaataacc atccgtgctc cacgactgcc accacctgcg tcaatataat
      241 gcgtcaattg cgttaatacg gcggcagaag tcagcgtcat atgccgccac ataaacagtt
      301 cggcaatttc gcctgcgtga ttgatggtta aaccgtgttg ttgtacaaac tcacttagca
      361 gcagggcgtc acgggtggca tgacgaactt tatcggcatg acaaataaat ccggcgtaat
      421 cagacattcg cgcctggatt ttgtctttca ccgttaccag cgccattccg ttctcgtttg
      481 ccagtgcctg agcgataact tctctgacta tattcagaga tgaggctacc agctgcgcga
      541 catcaccctc aacagaccgc ttttgcgtgc aaccaataaa acgtgccaga cgaacagcaa
      601 aaacctgccc ggcattcaat gctgcaccac tagggcgagt gacgccgtgt gtgccagcaa
      661 cttcccccac ggcgaaacag ccgggcaggg aggtttgtcc ccagatatcc acttcaatgc
      721 cgccattcat atgctgatta ttcatggcaa actgcaaagg ctgtgtggtg agatcgtaac
      781 cgtgcatctt atacagcgag atagacagcg gattcattcg ttgcagccgt tcgatgggcg
      841 atggtgccag agcgtcgtta ttttccagat acgcgcgaac gtcgtcgtcc agtcgatcta
      901 atgagaacgg caggtcaccc ggcaccgctt caggattgcg attgaaatcc ataaatacct
      961 gacgccctga ttgctgctct tgcgctactg ccatatctaa caagcggagc caaaatccat
     1021 cacccgagtg gcgtggaacg gcca
//
LOCUS       DADMJB010000348         1019 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.354, whole genome shotgun sequence.
ACCESSION   DADMJB010000348 DADMJB010000000
VERSION     DADMJB010000348.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1019)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1019)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.354"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..767)
                     /gene="ipaH3"
                     /locus_tag="JN078_004279"
     CDS             complement(<1..767)
                     /gene="ipaH3"
                     /locus_tag="JN078_004279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase IpaH3"
                     /protein_id="HAY9043226.1"
                     /translation="MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGE
                     NRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASL
                     EYLDACDNHLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPT
                     SLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR
                     ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA"
BASE COUNT          290 a          163 c          249 g          317 t
ORIGIN      
        1 tgggcggttt gttgcgacag agactccctg atccgtgagg acagaggatt gtcttcgagg
       61 atgatagtgc aggtcggatc aaggctaagt atattttccg gaatgtgtgt gatgcgattc
      121 tcgcggcacc ggaaaaatat ctcggtttcc tctgagtgat gatttcttac aggtacggct
      181 ggtaggcttt ccagaagatt agtacttaca tcgagcgctt ccagtgattc aggtaactca
      241 gggagaaatg tcagctggtt atttcttact gagagcactt ccagcgatgt aggtaattca
      301 ggaagcatgg ttagctgatt gttatctgca ttaatatatt ccagcaatgc aggcaattca
      361 ggaagcatgg ttagttggtt gttatctaca tcaagatgtt tcagagatgc gggtaattca
      421 ggaagtgttg acaggtgatt gtcacaggcg tcaaggtatt ccagcgatgc tggcaattct
      481 ggtaatgata ttagggcatt ctgagtaatt tccagaacag tgatttgagg tggtaagttg
      541 tcaggtagcg aggacagatt taaacgattc agttgaagct cactgaactg attgatgaga
      601 cattctttaa gtagggagac cgcttcattc cgattttcac cggggagcgc ttgtttttcc
      661 catttatccc atgctgaaaa gtaatcagca tatgtaccgg aaatagtgtt ataaaaagaa
      721 ttttgggaca atgaaaagtt attatttatc ggtaacatga tggacattca gttaaagccg
      781 atggacaaat ggctttgtta aaagaaataa gtaggagttt ttatgaagtt cattccatga
      841 aatgaacttc agcacttttt tattataaaa ggacaaacaa aattggctgt aaaaaaacga
      901 tactgtttca gttaactgtg aatagcttgc ttgcaccgta ttgttcttgt ttttcggtta
      961 gttaaacatc gtacttcata tttgaacgtt ctgccggaat gcattatcaa tagaggtaa
//
LOCUS       DADMJB010000349         1009 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.355, whole genome shotgun sequence.
ACCESSION   DADMJB010000349 DADMJB010000000
VERSION     DADMJB010000349.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1009)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1009)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1009
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.355"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            201..395
                     /gene="bfd"
                     /locus_tag="JN078_004280"
     CDS             201..395
                     /gene="bfd"
                     /locus_tag="JN078_004280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin-associated ferredoxin"
                     /protein_id="HAY9043227.1"
                     /translation="MYVCLCNGVSDKKIRQAVRQFHPQSFQQLRKFIPVGNQCGKCIR
                     AAREVMQDELMQMPEFKEIA"
     gene            468..944
                     /gene="bfr"
                     /locus_tag="JN078_004281"
     CDS             468..944
                     /gene="bfr"
                     /locus_tag="JN078_004281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HAY9043228.1"
                     /translation="MKGDVKIINYLNKLLGNELVAINQYFLHARMFKNWGLMRLNDVE
                     YHESIDEMKHADKYIERILFLEGTPNLQDLGKLGIGEDVEEMLQSDLRLEQEGAKDLR
                     EAIAYADSVHDYVSRDMMIEILADEEGHIDWLETELDLIGKIGLQNYLQSQIKVKD"
     gene            complement(941..>1009)
                     /locus_tag="JN078_004282"
     CDS             complement(941..>1009)
                     /locus_tag="JN078_004282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HAY9043229.1"
                     /translation="PFGPFLAAAGFVIGWDSLLIGR"
BASE COUNT          302 a          205 c          231 g          271 t
ORIGIN      
        1 gctaaagttc tgggttaatt acacgttaat tagttttgaa ttgaaaaggg cgcttcggcg
       61 ccctttttgc tgcccgtaat ttgagctcga aatatttagt cgtaattttg ctcgctgaac
      121 tatggcgcaa ataaaactgt gctattgtaa tcataatcat tctcatttac actttgcgca
      181 gaatttgaac gggagcaatc atgtacgttt gtttgtgtaa tggtgtaagt gacaaaaaaa
      241 ttcgccaggc agtccgtcag tttcatccgc aatctttcca acaattgcgt aagtttattc
      301 ctgtgggaaa tcaatgcggt aagtgcattc gcgccgcgcg cgaagtgatg caggacgagt
      361 tgatgcagat gccagaattt aaagagattg cctgaagacc acgcttattt tttgacatcc
      421 cgctagcccc atctacgctc taatagtgga agcggaggga ctataaaatg aaaggtgatg
      481 ttaaaatcat aaattatctc aataaactat tgggaaatga gcttgtcgca atcaatcagt
      541 attttctcca tgcccggatg tttaaaaact ggggcctgat gcgtctcaat gacgtcgaat
      601 accatgaatc catcgatgag atgaaacacg ctgataaata tatcgagcgt attttgtttt
      661 tagaaggaac ccccaactta caggatttag gcaaactggg gattggtgaa gatgtcgagg
      721 agatgctgca atccgacctg cgattagaac aggaaggcgc gaaggatctg cgtgaggcta
      781 tcgcatatgc cgacagcgtt catgactatg ttagccgcga tatgatgatc gagatccttg
      841 ctgatgaaga aggtcatatc gactggctcg aaactgaact ggatctcatc ggtaaaattg
      901 gcctacaaaa ttacctgcaa tcacaaatta aagttaaaga ttaacggcct atcagcaaac
      961 tatcccagcc tataacgaaa cccgcagccg ccagaaatgg cccaaaagg
//
LOCUS       DADMJB010000350         1006 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.356, whole genome shotgun sequence.
ACCESSION   DADMJB010000350 DADMJB010000000
VERSION     DADMJB010000350.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1006)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1006)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1006
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.356"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>1006
                     /locus_tag="JN078_004283"
     CDS             <1..>1006
                     /locus_tag="JN078_004283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HAY9043230.1"
                     /translation="VEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETA
                     RLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDAANYRSEHLWIVARDGVEVPV
                     SLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELG
                     QQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYAMGGSAGGMLMGVAINQRPE
                     LFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQA
                     YPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDNHLLLLCTDMDSGHGGKSGRFKSYE
                     G"
BASE COUNT          244 a          223 c          266 g          273 t
ORIGIN      
        1 ggttgaagag cgtcagcgcg ggttaaccag tttgcgccaa attaaccgca agacccggga
       61 agtcattggt attgcctttg atgatccagc ctatgtgacc tggattgcct acaatccaga
      121 acctgaaacc gcgcgattgc gttatggtta ttcttccatg accacaccag acactttgtt
      181 tgaactggat atggataccg gtgagcgtcg tgtattaaaa caaacggaag ttcctggttt
      241 tgatgcggcg aattaccgca gtgaacacct gtggatagtc gcccgtgatg gcgtcgaagt
      301 tccggtttcg ttggtctacc atcgcaaaca ttttcgcaaa ggacacaacc cgttgctggt
      361 gtatggctat ggttcttacg gcgcaagtat tgatgccgat ttcagtttta gccgcttgag
      421 tttgttagat cgtggctttg tctacgccat tgtccatgtt cgcggcggtg gtgagctggg
      481 gcaacaatgg tacgaagacg gaaaatttct gaagaagaaa aatacgttta atgattatct
      541 tgatgcctgc gatgcattgt taaaactggg ctatggctct ccttcgcttt gttatgcgat
      601 gggcgggagt gcggggggca tgttgatggg cgttgcaatt aatcaacgcc cggaattatt
      661 ccacggcgtt atcgcccagg taccgtttgt tgatgttgta acaacgatgc ttgatgaatc
      721 aattcctctt accactggtg agtttgaaga gtggggtaac ccgcaggatc cgcaatatta
      781 cgagtacatg aaaagctaca gcccgtatga caacgtcacc gcacaggctt atccgcattt
      841 actggtaacg accggtttac acgattctca ggtgcaatat tgggaaccgg caaaatgggt
      901 cgctaaattg cgcgagctga aaaccgataa ccatctttta ttgctctgta ccgacatgga
      961 ctcaggccat ggcggtaaat ctggccgctt taaatcgtac gaaggc
//
LOCUS       DADMJB010000351          999 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.357, whole genome shotgun sequence.
ACCESSION   DADMJB010000351 DADMJB010000000
VERSION     DADMJB010000351.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 999)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 999)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..999
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.357"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            113..463
                     /gene="tnpB"
                     /locus_tag="JN078_004284"
     CDS             113..463
                     /gene="tnpB"
                     /locus_tag="JN078_004284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HAY9043231.1"
                     /translation="MISLPSGTRIWLVAGITDMRKSFNGLGEQVQHVLNDNPFSGHLF
                     IFRGRRGDMIKILWADADGLCLFTRRLEEGQFIWPAVRDGKVSITRSQLAMLLDKLDW
                     RQPKTSRLNALTML"
     gene            494..>999
                     /locus_tag="JN078_004285"
     CDS             494..>999
                     /locus_tag="JN078_004285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000080164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HAY9043232.1"
                     /translation="MNQKYLIRIAELECQLRQKDQQLSLVEETEAFLRSALARAEEKI
                     EEDEREIEHLRAQIEKLRRMLFGTRSEKLRREVEQAEALLKQREQDSDRYSGREDDPQ
                     VPRQLRQSRHRRPLPEHLPREINRLEPEESCCPECGGELDYLGEVSAEQLELVSSALK
                     VIRTERVK"
BASE COUNT          254 a          255 c          284 g          206 t
ORIGIN      
        1 cagttagtgc cagctcctgc aaggtggagt tccgtcacgg taacatgacg ctggaaaatc
       61 cttcaccaga gctgctcaca gtgttgatcc gtgaactgac cgggagggga cgatgatctc
      121 actcccgtca ggcacccgca tctggctcgt tgctgggata accgatatgc gtaagtcttt
      181 caacgggctg ggtgaacagg tacagcatgt gctgaatgat aatcccttct ccggtcacct
      241 gttcatcttc cgtggccgac ggggtgacat gattaaaatc ctgtgggctg atgctgatgg
      301 tctgtgcctg ttcaccagac gcctggagga aggccagttt atctggcctg ctgtgcgtga
      361 cggcaaggta tccattaccc gctcgcaact ggcaatgctc ctcgataagc tggactggcg
      421 tcagccaaaa acatcccgcc ttaatgcact gacaatgttg taaaaatgtc atggccggat
      481 tataaaaacg gccatgaatc aaaaatacct cattcgcatt gcagaactgg aatgccagct
      541 ccgtcagaaa gaccagcaac tgagtctggt tgaagagacg gaggccttcc tgcgctctgc
      601 actggcccgc gccgaagaaa agatcgaaga agatgaacgg gaaatagaac atctgcgggc
      661 tcagatagaa aaactgcgcc ggatgctgtt cggtacccgt tctgaaaaac tgcgtcgtga
      721 agttgaacag gctgaggccc tgctgaaaca acgcgaacag gacagtgatc gttacagtgg
      781 gcgggaagac gatccgcagg ttccccgcca gttgcgacag tctcgtcatc gtcgcccgtt
      841 accggagcat ctgccccgcg aaataaatcg cctggagcca gaagaaagct gttgcccgga
      901 gtgtggcggt gagctggatt atctggggga agtcagcgca gaacaactgg aactggtgag
      961 cagcgctctg aaagtgatcc gcacagaacg ggtaaaaaa
//
LOCUS       DADMJB010000352          987 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.358, whole genome shotgun sequence.
ACCESSION   DADMJB010000352 DADMJB010000000
VERSION     DADMJB010000352.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 987)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 987)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..987
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.358"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..978
                     /locus_tag="JN078_004286"
     CDS             <1..978
                     /locus_tag="JN078_004286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000080172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HAY9043233.1"
                     /translation="CEHLPLYRQSEIFARQGVELSRALLSNLVDACCQLMTPLNDALY
                     RYVMNSRKVHTDDTPVKVLAPGRKKAKTGYIWTYVRDDRNAGSPEPPAVWFAYSPDHQ
                     GKHPEQHLSPFRGILQADAFNGYDRLFSAEREGGALTEAGCWAHARRKVHDVYISTKS
                     ATAEEALKLIGELYAIEHEIRGLPVSERLAVRQMQSKPLLTSLYKLMQEKEHTLSKKC
                     RLRDAFRYIRKHWVALCNFSDDGLAEADNNAAERALRAVCLGKKNFMFFGSDHGGERG
                     ALLYGLIGTCRLNGIDPEAYLRYILSVLPEWPSNRVDELLPWNVALTNK"
BASE COUNT          248 a          244 c          285 g          210 t
ORIGIN      
        1 tgcgaacacc tgccactgta tcgtcagagt gaaatttttg cccgtcaggg tgtcgaactg
       61 agccgtgcat tactctccaa cttggttgac gcgtgctgcc agttaatgac gccgctgaat
      121 gatgctctgt accgttatgt aatgaacagc cgcaaagttc acactgatga cacaccagta
      181 aaagtgctgg caccgggcag gaagaaggcg aaaacaggat atatctggac gtatgtccgg
      241 gatgacagga atgccggttc gccagagcct ccggcggtct ggttcgccta ctcaccggac
      301 catcagggta aacatccgga gcagcacctt agtcccttcc ggggtatcct gcaggcagat
      361 gcgtttaatg gttacgatcg gctgttcagt gccgaacgag aaggcggcgc gttgacggaa
      421 gcaggatgct gggctcatgc gcggcgcaaa gtccacgatg tatatatcag taccaaaagc
      481 gcgacagcgg aagaagccct gaaactaatc ggtgagctgt acgccatcga gcacgaaata
      541 cgcgggttgc cggtgtctga acgcctggcg gtcaggcaaa tgcagagtaa accgctactg
      601 acttccctgt ataagctgat gcaggagaaa gaacacacgt tatcgaaaaa atgccgtctg
      661 agagatgcgt tccggtatat caggaagcac tgggttgcgt tgtgcaactt cagtgatgat
      721 ggtctggctg aggcggataa taatgccgcg gaaagagcgc ttcgtgcagt ctgtctcgga
      781 aagaaaaact ttatgttctt cggcagcgat cacggtggag agcgtggtgc gctactgtac
      841 gggctgatcg gcacctgccg actgaacggt atcgatccgg aagcgtatct gcgctatatc
      901 ctgagcgtac tgccggaatg gccttccaac cgtgttgacg aactcctgcc atggaacgta
      961 gcactcacca ataaataagc gtcaata
//
LOCUS       DADMJB010000353          970 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.359, whole genome shotgun sequence.
ACCESSION   DADMJB010000353 DADMJB010000000
VERSION     DADMJB010000353.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 970)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 970)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..970
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.359"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(13..954)
                     /locus_tag="JN078_004287"
     CDS             complement(13..954)
                     /locus_tag="JN078_004287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000232699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY9043234.1"
                     /translation="MAGALQTPTLSIFLADELKARPIMVGFFFTGSAIMGILVSQFLA
                     RHSDKQGDRKLLILLCCLFGVLACTLFAWNRNYFILLSTGVLLSSFASTANPQMFALA
                     REHADRTGRETVMFSTFLRAQISLAWVIGPPLAYELAMGFSFKVMYLTAAIAFVVCGL
                     IVWLFLPSIQRNIPVVTQPVEILPSTHRKRDTRLLFVVCSMMWAANNLYMINMPLFII
                     DELHLTDKLAGEMIGIAAGLEIPMMLIAGYYMKRIGKRLLMLIAIVSGMCFYASVLMA
                     TTPAVELELQILNAIFLGILCGMRCTGNSGHYHLFFF"
BASE COUNT          301 a          227 c          225 g          217 t
ORIGIN      
        1 tcagatggct gcttaaaaaa agaacaaatg gtagtgtccg ctattgccag tacacctcat
       61 accacagaga ataccaagga agatggcatt tagaatttgc aattccagct caaccgccgg
      121 agtcgtcgcc atgagtacgc tggcgtaaaa acacatacca ctcacgatag caatgagcat
      181 taatagtcgc ttgccaatac gtttcatgta atagcctgcg attaacatca tcggaatttc
      241 cagaccggca gcgataccaa tcatttctcc agccagttta tcggttagat gcagttcatc
      301 aataataaat agcggcatat ttatcatgta gagattattc gccgcccaca tcattgaaca
      361 gaccacaaaa agtagccgcg tatcccgctt cctatgggtg gagggtaaaa tttctacggg
      421 ttgggtaacg acaggaatat ttctttgtat tgatggcaaa aacaaccaga ctatcagccc
      481 gcaaacaaca aatgcgatgg cagcggtgag atacatcact ttaaaactaa accccattgc
      541 cagttcataa gcgagcggtg gcccgataac ccaggcaagc gagatctgag cacgtaaaaa
      601 tgtactgaac atgaccgtct cacggcctgt tctgtcggcg tgttcacggg cgagggcgaa
      661 catttgcggg tttgcggtag aagcaaaact actcagaagt acgcccgtag agaggagaat
      721 gaagtagttg cgattccacg caaaaagcgt gcaggccagc actccaaata agcaacatag
      781 cagaatcagt aatttacggt cgccttgttt atcggagtgc cttgccagaa attgactgac
      841 cagaattccc ataatagcgc taccggtgaa gaaaaaacct accattatag gacgggcttt
      901 cagttcatct gcgaggaata tacttagggt aggagtctga agagcgcccg caatacccgt
      961 cagaaaggcg
//
LOCUS       DADMJB010000354          941 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.360, whole genome shotgun sequence.
ACCESSION   DADMJB010000354 DADMJB010000000
VERSION     DADMJB010000354.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..941
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.360"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            5..565
                     /locus_tag="JN078_004288"
     CDS             5..565
                     /locus_tag="JN078_004288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001367725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HAY9043235.1"
                     /translation="MFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSK
                     PCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVA
                     SSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSY
                     FISVFKAFYGLTPLNYLAKQRQKVMW"
     gene            complement(611..687)
                     /locus_tag="JN078_004289"
     tRNA            complement(611..687)
                     /locus_tag="JN078_004289"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(651..653),aa:Arg,seq:tct)
BASE COUNT          259 a          227 c          217 g          238 t
ORIGIN      
        1 tctgttgttt ttaaataaga acttaacctg tgtaaagccc tggtcgcggc tggcaacccc
       61 ggttatcgct tgtcatagcc gtacaccgga agtgttccgg ctagccgcca accacagcaa
      121 gcagcaaccc agcaaaccct gcgaagcgga gttgacgcgc gcattacttt ttaccgtatt
      181 gtctaacttt cttgagcaat cgcggtttat tgccctactg atgtatatct tacgcagcag
      241 cgtccgcgac agcgtctgcc gcattattca aagcgatatt cagcattact ggaatctgcg
      301 aattgtcgcc agttcgctat gtttaagccc cagcctgctc aaaaagaaat taaaaaacga
      361 aaataccagc tatagccaga ttgtcacaga gtgtcgtatg cgttacgccg tacagatgtt
      421 attgatggat aacaaaaata tcactcaggt ggcgcaatta tgtggctata gcagcacgtc
      481 gtactttatc tctgttttta aggcgtttta cggcctgaca ccgttgaatt atctcgccaa
      541 acagcgacaa aaagtgatgt ggtgaagggc aaagcggaaa cggataagac gggcataaat
      601 gaagaagaaa tggcgcgccc tgcaggattc gaacctgcgg cccacgactt agaaggtcgt
      661 tgctctatcc aactgagcta agggcgcgtt gataccgcaa tgcggtgtaa tcgcgtgaat
      721 tatacggtca acccttgctg agtcaatggc ttttgatctg gttgctgaac aagtgaacga
      781 ccgcgtctga ttttctgatt tatttcgcta tagcggcaaa caaacgcaca ccgctgcgcg
      841 tctgaatcaa gaaaacccgt attttcatgt atcaaagtac aatttaccgc cctaacggaa
      901 aattgtccgc tcctatgaga ctggtaacta tgaaaccaac g
//
LOCUS       DADMJB010000355          925 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.361, whole genome shotgun sequence.
ACCESSION   DADMJB010000355 DADMJB010000000
VERSION     DADMJB010000355.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 925)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 925)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..925
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.361"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(45..381)
                     /locus_tag="JN078_004290"
                     /pseudo
     CDS             complement(45..381)
                     /locus_tag="JN078_004290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502602.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          303 a          167 c          167 g          288 t
ORIGIN      
        1 aatatgaaaa gatggtttaa ataccccgtt acttttgact tacactatac ggtatcgcat
       61 cgtttaatat tcgcaccggc cagattttta tttctattag ttgtcacaat actgaatgcg
      121 tacgaccaca gtattctggc tcctgtgtgg tcatgcttta attctgcgtt ccggacagat
      181 aagcagttgc ttgcaggaat ccttcttgtg ttaatgtcag ttcccctttt taccagtgct
      241 gatttccaca ttccgtccaa cagagcttat agcctttccc tggattatag cattgtccgg
      301 ctgaagttct ttttgaataa taatagaagc actgctggca gatccagtcc gtttttcata
      361 acccactgta ctgataacca taatctaatc agtagaaatt gagtcgaaaa taagcactac
      421 tccatacagg ataattagag gtcagtttga ttattcacaa ttcattatca gcattttctg
      481 tttctgacga aatcaacatg aaaagaacca tatatgataa ttattataat aacggcttta
      541 attggaatac atatattaca acgtattata tataattggt attctgggaa ctatattctc
      601 aaaatacagt agaaacgagg tatgtttctg gtggaaagga cagtgggatt aaaaagtaag
      661 aattgataaa aaaacgccag caacacatag tgccggcgga gggaataccc catggagaaa
      721 atgtgatgcc tagagcacca tgaatatata attaaaaata gttagagttg tcaatacttt
      781 cacaaaaata attttcgtag tttcgtagta tagaaagata tttttatgca tgacctacct
      841 gaatttgctc cgggtagagg ttataaataa aaattgaatc acgacaaaca caatattcat
      901 agtatggcga tgcctacgcc agcaa
//
LOCUS       DADMJB010000356          921 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.362, whole genome shotgun sequence.
ACCESSION   DADMJB010000356 DADMJB010000000
VERSION     DADMJB010000356.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.362"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..>921)
                     /locus_tag="JN078_004291"
     CDS             complement(<1..>921)
                     /locus_tag="JN078_004291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF898 family protein"
                     /protein_id="HAY9043236.1"
                     /translation="RFSYGITGGNVFFSCLVFVFFYFAILMTVSADMPLVGCVLTLSL
                     LVLLIFMAAKGLRYQALMTSLNGVRFSFNCSMKGFWWVTFFLPILMAIGMGTVFFIST
                     KMLHANSSSSVIISVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDT
                     AYCIKYAILAFLALLPFLAVAGYIIFEQILNAYDSSVYANDDIENLQQFMEMQRKMII
                     AQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISG
                     ITGGLAYPLLKIWMIDWQAKNTYLLGDLDDL"
BASE COUNT          354 a          207 c          141 g          219 t
ORIGIN      
        1 aaggtcatcc aaatcgccca gcaaatacgt attttttgcc tgccagtcaa tcatccatat
       61 tttcagcagt ggataagcca gaccgcccgt aatcccggat atcactacca acgcacacat
      121 gcgataaagc ataccgtggt acgttaaagt tgagcgaaaa cgaatacgcc catcattcag
      181 tgacaggtta ctcataaaat gatttcgcaa cgacaccgtt aaataactgg tgctaacagc
      241 aatcccaaaa taatagatta actgcgcgat tatcatttta cgttgcattt ccataaattg
      301 ctgtaaattc tcaatatcat catttgcata cacagaacta tcatacgcat ttaatatttg
      361 ttcgaagata atataaccag caacagcgag aaaaggtaat aaagctaaaa atgcgaggat
      421 ggcatatttt atacaatacg cagtatctaa tttcaccttg aaacgatgta taccgaaact
      481 ggtattgctc cagagaaaac tcattaccag gctatataaa gtaccattaa aaataccaat
      541 ggaaacaata ccaactattg ccatcagaac cacagatata ataacactac ttgaactatt
      601 ggcatgtagc atctttgtcg agataaagaa aacagtcccc atcccaatgg ccattaaaat
      661 cggcaagaaa aaggttaccc accagaaccc tttcatagag caattaaaac taaatcttac
      721 gccgttgaga ctagtcatca aggcctgata acgcagtcct tttgctgcca taaatataag
      781 caaaaccaac agtgacaaag tcaaaacaca gccaacaagc ggcatatctg ctgacactgt
      841 cattaagatt gcgaaataga aaaaaacaaa aacaagacaa ctaaaaaaaa cattcccacc
      901 agtaattcca taagaaaatc g
//
LOCUS       DADMJB010000357          916 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.363, whole genome shotgun sequence.
ACCESSION   DADMJB010000357 DADMJB010000000
VERSION     DADMJB010000357.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 916)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 916)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.363"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            1..624
                     /locus_tag="JN078_004292"
                     /pseudo
     CDS             1..624
                     /locus_tag="JN078_004292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416251.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
     gene            675..>916
                     /gene="chbA"
                     /locus_tag="JN078_004293"
     CDS             675..>916
                     /gene="chbA"
                     /locus_tag="JN078_004293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N,N'-diacetylchitobiose transporter subunit
                     IIA"
                     /protein_id="HAY9043237.1"
                     /translation="MMDLDNIPDTQTEAEELEEVVMGLIINSGQARSLAYAALKQAKQ
                     GDFAAAKAMMDQSRMALNEAHLVQTKLIEGDAGEGK"
BASE COUNT          221 a          224 c          252 g          219 t
ORIGIN      
        1 gttcttcggt attcatggcg cgctggcgct gaccgcactg gacaacggca ttatgacgct
       61 gtgggcgctg gaaaatatcg cgacctatca gcaatatggt tccgtcgaag cggcgctggc
      121 agccggtaag accttccata tctgggccaa gccgatgctg gactccttta ttttccttgg
      181 ggcagtggtg cgactttagg cctgatcctg gctatcttta tcgcctctcg ccgtgctgat
      241 tatcgtcagg tggcaaaact ggcgctgccg tccggcatct tccagattaa cgaaccgatt
      301 ctgtttggtc tgccaattat catgaacccg gtgatgttta tcccgtttgt actggtacaa
      361 ccgattctgg cggcaatcac cctcgcagcg tactacatgg gcattattcc tccggtgacc
      421 aatattgcac cgtggaccat gccaaccggt ctgggagcct tctttaacac caacggtagc
      481 gtcgctgcat tgctggtcgc actcttcaac cttggtatcg caacgttaat ttatctgccc
      541 tttgttgtgg tggctaacaa agcgcaaaac gcgattgata aagaagagag cgaagaagat
      601 atcgctaacg ccctgaaatt ttaatcgatg ccggtacggt taatcgtgcc ggtaagaaga
      661 gagaggaacg atgtatgatg gatctcgata acattcccga tacgcaaaca gaagctgaag
      721 agctggaaga agtggtgatg gggcttatca tcaactccgg acaagcgcgc agcctggcgt
      781 atgcggcact gaaacaggcg aagcagggcg attttgccgc agcaaaagcc atgatggatc
      841 agtcacggat ggcattgaat gaagcgcatc tggtacagac gaaactgatt gaaggcgatg
      901 cgggcgaagg taagat
//
LOCUS       DADMJB010000358          914 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.364, whole genome shotgun sequence.
ACCESSION   DADMJB010000358 DADMJB010000000
VERSION     DADMJB010000358.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 914)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 914)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..914
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.364"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>914
                     /gene="tuf"
                     /locus_tag="JN078_004294"
     CDS             <1..>914
                     /gene="tuf"
                     /locus_tag="JN078_004294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HAY9043238.1"
                     /translation="AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL
                     LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKAL
                     EGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII
                     KVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAK
                     PGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMP
                     GDNIKMVVTLIHPIAMDDGLRFAIREGGR"
BASE COUNT          212 a          230 c          264 g          208 t
ORIGIN      
        1 gcacacgtag actgcccggg gcacgccgac tatgttaaaa acatgatcac cggtgctgct
       61 cagatggacg gcgcgatcct ggtagttgct gcgactgacg gcccgatgcc gcagactcgt
      121 gagcacatcc tgctgggtcg tcaggtaggc gttccgtaca tcatcgtgtt cctgaacaaa
      181 tgcgacatgg ttgatgacga agagctgctg gaactggttg aaatggaagt tcgtgaactt
      241 ctgtctcagt acgacttccc gggcgacgac actccgatcg ttcgtggttc tgctctgaaa
      301 gcgctggaag gcgacgcaga gtgggaagcg aaaatcctgg aactggctgg cttcctggat
      361 tcttacattc cggaaccaga gcgtgcgatt gacaagccgt tcctgctgcc gatcgaagac
      421 gtattctcca tctccggtcg tggtaccgtt gttaccggtc gtgtagaacg cggtatcatc
      481 aaagttggtg aagaagttga aatcgttggt atcaaagaga ctcagaagtc tacctgtact
      541 ggcgttgaaa tgttccgcaa actgctggac gaaggccgtg ctggtgagaa cgtaggtgtt
      601 ctgctgcgtg gtatcaaacg tgaagaaatc gaacgtggtc aggtactggc taagccgggc
      661 accatcaagc cgcacaccaa gttcgaatct gaagtgtaca ttctgtccaa agatgaaggc
      721 ggccgtcata ctccgttctt caaaggctac cgtccgcagt tctacttccg tactactgac
      781 gtgactggta ccatcgaact gccggaaggc gtagagatgg taatgccggg cgacaacatc
      841 aaaatggttg ttaccctgat ccacccgatc gcgatggacg acggtctgcg tttcgcaatc
      901 cgtgaaggcg gccg
//
LOCUS       DADMJB010000359          914 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.365, whole genome shotgun sequence.
ACCESSION   DADMJB010000359 DADMJB010000000
VERSION     DADMJB010000359.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 914)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 914)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..914
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.365"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..186)
                     /locus_tag="JN078_004295"
     CDS             complement(<1..186)
                     /locus_tag="JN078_004295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HAY9043239.1"
                     /translation="MKSMDKISTGIAYGTSAGSAGYWFLQWLDQVSPSQWAAIGVLGS
                     LLLGLLTYLTNLYFKIRE"
     gene            complement(479..553)
                     /locus_tag="JN078_004296"
     tRNA            complement(479..553)
                     /locus_tag="JN078_004296"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(518..520),aa:Gly,seq:tcc)
     gene            complement(557..632)
                     /locus_tag="JN078_004297"
     tRNA            complement(557..632)
                     /locus_tag="JN078_004297"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(597..599),aa:Thr,seq:tgt)
     gene            complement(635..711)
                     /locus_tag="JN078_004298"
     tRNA            complement(635..711)
                     /locus_tag="JN078_004298"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(675..677),aa:Arg,seq:tct)
     gene            complement(713..789)
                     /locus_tag="JN078_004299"
     tRNA            complement(713..789)
                     /locus_tag="JN078_004299"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(753..755),aa:Ile,seq:cat)
BASE COUNT          266 a          234 c          212 g          202 t
ORIGIN      
        1 ttctcttatt ttgaaataca gattcgtcag ataagtcaga agccccagaa gcagacttcc
       61 cagcacacca atcgcagccc actgtgatgg actgacctga tccaaccact gcaaaaacca
      121 gtagccggca ctgccggcgg aggtgccgta ggcaatgccc gttgaaattt tgtccatgga
      181 tttcatagcc tcacctccgc aaataacgga tggcgtagtt ttacactgag aaatgaaagg
      241 gatttgaaaa gaaaaaaacg caaaagcggg cgaaacgata tatacagtaa ggaaagcact
      301 ctatccaaca aaccacccac agttaatcgg aataaaagca gagtgcttat gaatgatcgc
      361 acgcccgaag gttagtattt ctgcacagca attttgcaaa aaaaggcgat cattcataac
      421 ttaaacgtct ttcagtcact ccgggatttc ccatcatcgc agactgaaag actctgactg
      481 gagcgggcag cgggaatcga acccgcatca tcagcttgga aggctgaggt aatagccatt
      541 atacgatgcc cgcatatggt gccgactacc ggaatcgaac tggtgaccta ctgattacaa
      601 gtcagttgct ctgcctgctg agctaagtcg gcgctggccc accaccgagg actcgaacct
      661 cgcaccgtca acttagaagg ttgatgctct atccggatga gctagtggtg gttggtggcc
      721 cttgctggac ttgaaccagc gacctggcga ttatgagtcg ctcgctctga ccaactgagc
      781 taaagggccg gaggcagaat aataaccata tgtcatcaca tctgcaaact catctgacca
      841 ccagcacgtt taacgtcctg tgccgttttt caggtataaa aaaacccgca taaagcgggc
      901 tctttcaaat gtcc
//
LOCUS       DADMJB010000360          896 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.366, whole genome shotgun sequence.
ACCESSION   DADMJB010000360 DADMJB010000000
VERSION     DADMJB010000360.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 896)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 896)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..896
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.366"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>896
                     /locus_tag="JN078_004300"
     CDS             <1..>896
                     /locus_tag="JN078_004300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HAY9043240.1"
                     /translation="EHADGSVTQSQFDAVGRLRTQTDAAGRTTEYSPDVVTGLITRIT
                     TPDGRASAFYYNHHSQLTSATGPDGLEIRREYDEWGRLIQETAPDGDIIRYRYDNPHS
                     DLPCATEDATGSRKTMTWSRYGQLLSFTDCSGYVTRYDHDRFGQMTAVHREEGLSQYR
                     AYDSRGQLIAVKDTQGHETRYEYNAAGDLTAVIAPDGSRNGTQYDAWGKAIRTTQGEL
                     TRSMEYDAAGRVIRLTSENGSHTTFRYDVLDRLIQETGFDGRTQRYHHDLTGKLIRSE
                     DEGLVTHWHYDEADRLTHRTVNG"
BASE COUNT          221 a          267 c          267 g          141 t
ORIGIN      
        1 gaacacgcgg acggcagcgt cacgcagagt cagtttgacg ccgtgggcag gctcaggaca
       61 cagacggatg ccgcaggccg gacaacagaa tacagcccgg atgtggtgac gggcctcatc
      121 acgcgcatca ccacgccgga tggcagggca tcggcgtttt actataacca ccacagccag
      181 ttaacgtcag ccaccgggcc tgacgggctg gaaatacgcc gggaatatga tgaatggggc
      241 cgtctgattc aggaaactgc ccctgacggc gatatcatcc gctaccgtta tgataatcca
      301 cacagtgact taccctgcgc aacggaagat gccaccggta gccggaaaac catgacgtgg
      361 agccgttacg gtcagttgct gagcttcacc gactgttccg gttatgtaac ccgttatgac
      421 catgaccgct tcgggcagat gacggcggtg caccgcgagg aagggctgag tcagtaccgc
      481 gcatacgaca gccgtggaca gttaattgcc gtgaaagaca cgcagggcca tgaaacgcgg
      541 tatgaataca acgccgccgg tgacctgacc gccgtcattg ccccggacgg cagcagaaac
      601 gggacacagt acgatgcgtg gggaaaggcc atccgtacca cgcagggcga gctgacgcgc
      661 agtatggaat acgatgctgc aggacgggtc atccgcctga ccagtgaaaa cggcagccac
      721 accaccttcc gttacgatgt actcgaccgg ctgatacagg aaaccggctt tgacggccgc
      781 acacagcgtt atcaccacga cctgaccggc aaacttatcc gcagcgagga tgaggggctg
      841 gtcacccact ggcactatga cgaagcagac cgcctcacgc accgcaccgt gaatgg
//
LOCUS       DADMJB010000361          889 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.367, whole genome shotgun sequence.
ACCESSION   DADMJB010000361 DADMJB010000000
VERSION     DADMJB010000361.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 889)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 889)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..889
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.367"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            1..303
                     /gene="tnpA"
                     /locus_tag="JN078_004301"
                     /pseudo
     CDS             1..303
                     /gene="tnpA"
                     /locus_tag="JN078_004301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001499638.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
     gene            complement(321..889)
                     /locus_tag="JN078_004302"
                     /pseudo
     CDS             complement(321..889)
                     /locus_tag="JN078_004302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310063.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3313 domain-containing protein"
BASE COUNT          226 a          213 c          200 g          250 t
ORIGIN      
        1 cacgtccatt tgttaattaa ctaacctccc aaactggcga tatccagtct ggtaaacagc
       61 ctcaaaggcg tatcgggtag gttactgcga cgagatcgac cagatattgc agtcaggtat
      121 tactacaaag gcgttttgtg gagtcctggc tattttgcca gtagctgcgg aggtgcgcca
      181 atatccgtca tccgccaata cattgaacaa cagcaaacac ctggtcaggt ggaaaaccgc
      241 gccttatatc cccgccctga aggatggggt tttacggcgc accggataaa aagcgccatc
      301 taacgatggc gcgtctggaa ctactttttg ttaacgtcaa acatggtggc atcggtcgcc
      361 atgtcatcaa taacttgttt aatattttcg aaagccattg gcgtactttc gttattcagg
      421 tctttacctt agccctgacg aacgactttg ataaccggtt tattagtcgc tgcatcaatc
      481 agctcacctt caaaatagag gcgagtatcc atggtacggt gacctgtagc catttgcgtc
      541 cccgcaacca ctaatgcaac aggaaccact tcatagaatt gcagcccttc tttgctggta
      601 tctacaccgg taatggcccc acggaaaatc agactacgcg gcccagcggt ggtaaccagt
      661 ggtttacgct gcgctatcgc ttctttcatt tcggtgttgg tatagttcaa aattttatcc
      721 agaactttct gccctacctg ggtagaaggt tttggcaccg gataataagt gattgggttc
      781 cagacgatgc tgtcatattt gctttgatca aaactcgggt ctacccaacg taaaacaggt
      841 ttacctgttg ctgaggttgt ttcttttaaa tcagagtaat tgtttaaaa
//
LOCUS       DADMJB010000362          865 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.368, whole genome shotgun sequence.
ACCESSION   DADMJB010000362 DADMJB010000000
VERSION     DADMJB010000362.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 865)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 865)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..865
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.368"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..360
                     /locus_tag="JN078_004303"
     CDS             <1..360
                     /locus_tag="JN078_004303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043241.1"
                     /translation="TPVALSANDPANVWGNLLPWPAHPATLVPTRRAGALVVVSSGKL
                     LLYLAQGGKKMLVWQEKEELLAPEVFHALTTALRREPRLRFTLTEVNDLPVRQTPMFT
                     LLREAGFSSSPQGLDWG"
     gene            complement(411..758)
                     /gene="grxD"
                     /locus_tag="JN078_004304"
     CDS             complement(411..758)
                     /gene="grxD"
                     /locus_tag="JN078_004304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monothiol glutaredoxin 4"
                     /protein_id="HAY9043242.1"
                     /translation="MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACG
                     ERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE
                     TAAKYKSEEPDAE"
BASE COUNT          187 a          227 c          233 g          218 t
ORIGIN      
        1 acaccagtgg cgctctctgc caacgatccg gctaatgtgt ggggaaatct tctgccctgg
       61 cctgcacatc cggcaacgct ggttccaacg cgtcgggcgg gtgcgctggt ggtcgtttct
      121 agcggcaaat tgttactcta tctggcgcaa ggtggcaaaa aaatgctggt ctggcaggaa
      181 aaagaggaat tactcgcccc agaggttttc cacgcgctga ctaccgcact gcgtcgcgaa
      241 ccacggctgc gctttacgct aacagaagtg aatgatctac cggtccggca aacgccgatg
      301 tttacgctgc tgcgtgaggc gggattttca agttcgccac aagggctgga ttggggatag
      361 agaaaggact gacggatgcc cgttcgcatc cgtcagtatt gcaggacgga ttattccgcg
      421 tccggctctt cagacttgta tttagcggca gtttctttga tcagctgctg cagttcgcca
      481 cgctgataca tttcgatcac gatatcacaa ccgccgacca gctcgccgtc aacccacagt
      541 tgcgggaagg tcggccagtt agcatatttc ggcagttccg cacgaatgtc cggattctgc
      601 agaatatcaa cataggcaaa acgttcgcca catgcggcaa gcgcctggac tgcctgggca
      661 gagaaaccgc agctcggcag tttcggtgaa cctttcatgt acagcaggat cgggttttca
      721 gcaatctggc gttggatttt ttcgatagtg gtgctcattg tcttgcttcc tcaaacttct
      781 ttacggcagt aatctgacat tgtagcgggt cagtgcggca tcggaaaata acattttcat
      841 cacgcttttg ctattttatc ccttt
//
LOCUS       DADMJB010000363          819 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.369, whole genome shotgun sequence.
ACCESSION   DADMJB010000363 DADMJB010000000
VERSION     DADMJB010000363.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.369"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            121..>819
                     /locus_tag="JN078_004305"
     CDS             121..>819
                     /locus_tag="JN078_004305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043243.1"
                     /translation="MLPSISINNTSATYPESINENNNDEVNGLVQELKNLFNGKEGIS
                     TCIKHLLELIKNAIRVNDDPYRFNINNSSVTYIDIGSNDTDHITIGIDNQEPIELPAN
                     YKDKELVRTIINDNIVEKTHDINNKEMIFSALKEIYDGAPSFIFDKISHKLRHTVTEF
                     DESGKSEPTDLFTWYGKDKKGDSLAIVIKNKNGNDYLSLGYYDQDDYHIQRGIRINGD
                     SLTQYCSENARSASA"
BASE COUNT          313 a          146 c          135 g          225 t
ORIGIN      
        1 gctattgtgc gctcatacac tcaaattaaa gataggttct aaataaatga gcgttttttg
       61 atagtctatt tcattaggta atatatattt gtaacaaatc aatcaaaatg gaataaaatc
      121 atgctaccat ctatttcaat caacaatacc agcgcaactt acccagaatc cattaatgaa
      181 aataacaatg atgaagttaa tggattagta caagagctca aaaacctttt taatggtaag
      241 gaaggaataa gcacctgtat taaacatcta cttgagctta taaaaaacgc catacgagta
      301 aacgacgatc cttatagatt taatattaat aattcctcag ttacttatat tgatattggc
      361 tccaatgata cagaccatat tactattggt atcgacaacc aagaaccaat agaattacct
      421 gcgaactata aagacaaaga actcgtccgt actatcatta atgacaacat agttgagaag
      481 actcatgata tcaataacaa ggaaatgatc ttcagcgcat taaaagaaat atatgatgga
      541 gctcctagtt ttatcttcga taagatatca cacaaactca gacatacggt aacggaattt
      601 gatgagagcg ggaaaagcga accaacggac ttatttacct ggtacggtaa agataaaaaa
      661 ggcgactctc tcgctattgt aattaaaaat aaaaacggaa atgattactt atccctcggt
      721 tactacgatc aggacgacta ccacattcaa agaggaattc gtattaatgg tgatagtctc
      781 acccaatatt gtagtgaaaa cgccaggagt gcttcagcg
//
LOCUS       DADMJB010000364          811 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.370, whole genome shotgun sequence.
ACCESSION   DADMJB010000364 DADMJB010000000
VERSION     DADMJB010000364.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 811)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 811)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..811
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.370"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..346
                     /locus_tag="JN078_004306"
     CDS             <1..346
                     /locus_tag="JN078_004306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001613027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043244.1"
                     /translation="VMCLTKPAFSYYIAAYLKLFIENYYEADALVDTILNMLTPPVRN
                     GIPSTTWIAKNLDCFSRNKRVAISFTFQYLCNEYNDPNTEKALNIYWGQYLNESLLIK
                     NVQNSKNKCKSQ"
     gene            complement(407..592)
                     /locus_tag="JN078_004307"
     CDS             complement(407..592)
                     /locus_tag="JN078_004307"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043245.1"
                     /translation="MIMVAVAAAVTDALLVFFRQLAPFVVLPALGIFIIHGTVRQAVG
                     FIVMPERDQALMSLTVI"
     gene            591..794
                     /locus_tag="JN078_004308"
     CDS             591..794
                     /locus_tag="JN078_004308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000977355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein Rhs"
                     /protein_id="HAY9043246.1"
                     /translation="MMKNQMEPEYTPLRKIHLYHCDHRGLPLALIRSDGRTGWRVEYD
                     EWGNLLSEDNPHRERSSEVHFLY"
BASE COUNT          251 a          169 c          188 g          203 t
ORIGIN      
        1 tgtcatgtgt ctcactaaac cagcattctc atattatatt gcagcctatt taaaactttt
       61 tattgaaaat tattacgaag ctgatgcttt agtggatact attttaaata tgctcactcc
      121 tcctgttagg aatggtatcc ccagcactac atggatagca aaaaatcttg attgctttag
      181 tcgtaataaa agggtggcta tttcttttac attccaatat ttatgtaatg aatataatga
      241 tccaaatact gaaaaggcgt taaatatata ttggggacag tatctgaatg aatcattgct
      301 tattaaaaat gtacagaact ctaaaaataa atgtaaatca cagtaagaca gaaccaagca
      361 gaaatcgtgg gcgtggttcg caccctgacg gagggtgtag cgtgtactag atcacagtga
      421 gcgacatcaa agcttggtca cgttctggca ttacgatgaa gccgaccgcc tgacgcaccg
      481 taccgtgaat gatgaagatg ccgagtgctg gcagtacaac gaacggggct agctgacgga
      541 aaaagacgag cagcgcatcc gtgacggcgg cagccacagc caccattatc atgatgaaaa
      601 accagatgga gccggaatac acgccgctgc gtaaaattca cctgtaccac tgcgaccacc
      661 ggggactgcc gctggcgctg atacgcagtg acggccgaac cggatggcgt gtagagtatg
      721 acgaatgggg caacctgctg agtgaggata acccgcacag ggaaagatca tcagaagttc
      781 actttttgta ctaaataatt cgcattttat g
//
LOCUS       DADMJB010000365          797 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.371, whole genome shotgun sequence.
ACCESSION   DADMJB010000365 DADMJB010000000
VERSION     DADMJB010000365.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.371"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            9..>797
                     /gene="fdrA"
                     /locus_tag="JN078_004309"
     CDS             9..>797
                     /gene="fdrA"
                     /locus_tag="JN078_004309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase FdrA"
                     /protein_id="HAY9043247.1"
                     /translation="MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKA
                     LLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGAGSSQSL
                     TQVRRWDSACQKLSDANLALISVAGEYAAELANQALERNLNVMMFSDNVTLEDEIQLK
                     TRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIAQAGE
                     GITHAIGLGERDLSREVGGISALTALEMLSADEKSEVLAFVSKPP"
BASE COUNT          192 a          181 c          247 g          177 t
ORIGIN      
        1 gagttgttat gatccacgcc tttattaaaa aagggtgttt tcaggattcg gtcagtttaa
       61 tgattatttc acgaaaactc agcgaatcag aaaatgttga tgatgtttcc gtaatgatgg
      121 gtacgcccgc caataaagcg ttattagata ccacaggttt ctggcatgac gattttaata
      181 acgccacgcc gaacgatatt tgcgtggcaa ttcgtagcga agcggcggat gcggggatcg
      241 cgcaggcgat tatgcagcag cttgaagagg cgctaaaaca actggcgcag ggggcaggca
      301 gcagccagtc cttgacgcag gtgcgtcgct gggacagtgc ctgtcagaaa ttatccgatg
      361 ccaatctggc gctgatttca gtggctggcg agtatgcggc ggagctggcg aatcaggcgc
      421 tggagcgcaa cctcaacgtg atgatgttct ccgataacgt cacgctggaa gatgaaatcc
      481 aacttaaaac ccgcgcgcga gaaaaaggct tgctggtgat ggggccggac tgcggtacgt
      541 cgatgattgc cggcacgccg ctggcttttg ctaacgtgat gccggaaggc aacattggcg
      601 tcattggcgc ttccggtacc gggattcagg aactgtgttc gcagattgcg caggcagggg
      661 agggaattac tcacgcgatt ggtcttggcg agcgcgacct cagccgtgaa gtaggcggca
      721 tcagtgcgct gacggcgctg gaaatgctca gtgcagacga gaaaagcgaa gtgctggcat
      781 ttgtttcaaa gccacct
//
LOCUS       DADMJB010000366          778 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.372, whole genome shotgun sequence.
ACCESSION   DADMJB010000366 DADMJB010000000
VERSION     DADMJB010000366.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 778)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.372"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(32..736)
                     /locus_tag="JN078_004310"
     CDS             complement(32..736)
                     /locus_tag="JN078_004310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS6-like element IS26 family transposase"
                     /protein_id="HAY9043248.1"
                     /translation="MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDH
                     STIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTV
                     DFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDV
                     EHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYY
                     GDPLGEMRLVSRVFEM"
BASE COUNT          178 a          208 c          200 g          192 t
ORIGIN      
        1 atgaggcagc cttttgtctt attcaaaggc cttacatttc aaaaactctg cttaccaggc
       61 gcatttcgcc caggggatca ccataataaa atgctgaggc ctggcctttg cgtagtgcac
      121 gcatcacctc aatacctttg atggtggcgt aagccgtctt catggattta aatcccagcg
      181 tggcgccgat tatccgtttc agtttgccat gatcgcattc aatcacgttg ttccggtact
      241 taatctgtcg gtgttcaacg tcagacgggc accggccttc gcgtttgagc agagcaagcg
      301 cgcgaccata ggcgggcgct ttatccgtgt tgatgaatcg cgggatctgc cacttcttca
      361 cgttgttgag gattttaccc agaaaccggt atgcagcttt gctgttacga cgggaggaga
      421 gataaaaatc gacagtgcgg ccccggctgt cgacggcccg gtacagatac gcccagcggc
      481 cattgacctt cacgtaggtt tcatccatgt gccacgggca aagatcggaa gggttacgcc
      541 agtaccagcg cagccgtttt tccatttcag gcgcataacg ctgaacccag cggtaaatcg
      601 tggagtgatc gacattcact ccgcgttcag ccagcatctc ctgcagctca cggtaactga
      661 tgccgtattt gcagtaccag cgtacggccc acagaatgat gtcacgctga aaatgccggc
      721 ctttgaatgg gttcatgtgc agctccatca gcaaaagggg atgataagtt tatcacca
//
LOCUS       DADMJB010000367          731 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.373, whole genome shotgun sequence.
ACCESSION   DADMJB010000367 DADMJB010000000
VERSION     DADMJB010000367.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 731)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.373"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..276
                     /locus_tag="JN078_004311"
     CDS             <1..276
                     /locus_tag="JN078_004311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HAY9043249.1"
                     /translation="LNVYCRNGQVEIDNNIGENALRSVAVGRKNYLFFGSDNGGESAA
                     IIYSLLVTCKLNGVEPEDWLREVIVKLNDWPSNRVHELLPWNFSAVK"
     gene            complement(521..>731)
                     /locus_tag="JN078_004312"
     CDS             complement(521..>731)
                     /locus_tag="JN078_004312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY9043250.1"
                     /translation="PRKSNEKMASDGRAQLDRDAYCNRNVVERCFGRLKEYRRIATRY
                     DKTARNYLAMVKLGCIRLFYQRLRN"
BASE COUNT          172 a          173 c          189 g          197 t
ORIGIN      
        1 ctgaacgtgt actgtcgtaa tggccaggtg gaaatcgaca acaacatcgg tgaaaacgcg
       61 ctgcgatcgg tggcggttgg aagaaaaaat tatctcttct tcggttctga caacggtgga
      121 gaaagcgcgg cgattatcta cagtctgctg gtcacctgca aactgaacgg agtggagccg
      181 gaggactggt tgcgcgaagt gatcgtgaag ctcaatgact ggccgtcgaa ccgagtgcat
      241 gaactgctgc cctggaactt ctcagctgta aaataatcct tccgctacgt acttctctgg
      301 gcgcttacca ctcaacggca tcgtcaaaat tatcaaagcg cagaacatag atttatcatg
      361 tgttttatgg atggctttct ccatcaggca tcgttcgtca cgggaaattg gtgctatgat
      421 cggcattgat cagtccggtt ggtgatttgt tttgatttgg cgattgatca gatcgcacaa
      481 tccgggctga gttccctcta agtgatctag gttgtgtccc ttaattacgt aagcgttgat
      541 aaaagagtcg gatgcagccc agtttcacca tcgccaggta atttctcgcc gttttgtcgt
      601 aacgcgtggc gatgcggcga tattctttca gccgcccaaa gcaccgttca acgacattac
      661 gattgcagta cgcatcacga tcaagctgtg cacgtccatc cgatgccatt ttctcatttg
      721 actttcgggg g
//
LOCUS       DADMJB010000368          726 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.374, whole genome shotgun sequence.
ACCESSION   DADMJB010000368 DADMJB010000000
VERSION     DADMJB010000368.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.374"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            35..726
                     /locus_tag="JN078_004313"
                     /pseudo
     CDS             35..726
                     /locus_tag="JN078_004313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612230.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
BASE COUNT          170 a          181 c          200 g          175 t
ORIGIN      
        1 atttagtgta tgatggtgat tttaaggtgc ttgcgtggct tccatttcca tcagatgtcc
       61 ttcctgctcc gctactgaag gcgtggtgcg taacggcaaa agcactgccg gacatcagcg
      121 ctatctctgc tctcattgcc gtaaaacatg gcaactacag ttcacttaca ccgcctctca
      181 gcccggtacg caccagaaaa tcattgatat ggccatgaat ggcgtcggat gtcgcgccag
      241 tgcacgcatt atgggcgttg gcctcaacac ggttttacgt cacttaaaaa actcaggccg
      301 cagtcggtaa cctcgcgcat acaaccgggc agtgatgtga ttgtctgcgc tgaaatggac
      361 gaacagtggg gctacgtcgg tgctaaatca cgtcagcgct ggctgtttta cgcgtatgac
      421 aggatacgga ggacggttgt ggcgcacgtc ttcggtgaac gcactctggc cacactggag
      481 cgtcttctga gcctgctgtc ggcctttgag gtcgtggtat ggatgacgga tggctggccg
      541 ctgtatgaat cacgcctgaa gggaaagctg cacgttatca gcaagcgtta cactcagcgc
      601 attgagcgac ataatctgaa tctgagacaa catctggcaa ggctgggacg gaagtcactg
      661 tcgttctcaa aatcggtgga gctgcatgac aaggtcatcg ggcattatct gaacataaaa
      721 cactat
//
LOCUS       DADMJB010000369          726 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.375, whole genome shotgun sequence.
ACCESSION   DADMJB010000369 DADMJB010000000
VERSION     DADMJB010000369.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.375"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>726
                     /locus_tag="JN078_004314"
     CDS             <1..>726
                     /locus_tag="JN078_004314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HAY9043251.1"
                     /translation="ARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGV
                     LQADAYGGYRALYESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEA
                     EVRGCSAEQRLAARKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNV
                     YCSNGWVEIDNNIAENALRGVAVGRKNWLFAGSDSGGEHAVVLYSLIGTCRLNNVEPE
                     KWLRYVIEHLQDWPANRVRDLLP"
BASE COUNT          180 a          192 c          218 g          136 t
ORIGIN      
        1 ctgcccggct gtgggtctat gtccgtgatg accgtaacgc cggttcacag atgcccccgg
       61 cggtctggtt cgcgtacagc ccggaccgga aaggtatcca tccacagaat cacctggctg
      121 gttacagcgg tgtgcttcag gcagatgctt acggtggtta ccgggcgtta tacgaatccg
      181 gcagaataac ggaagccgcg tgtatggccc atgcccggag aaaaatccac gatgtgcatg
      241 caagagtgcc aaccgacatc accacggaag ccctgcagcg tatcggtgaa ctgtatacca
      301 tcgaggcaga agtccgggga tgttcagcag aacagcgtct ggcggcaaga aaagcaagag
      361 ccgcgccact gatgcagtca ctgtatgacc ggatacagca acagatgaaa acactgtcgc
      421 gtcactcgga tacggcaaaa gcgttcgcat acctactgaa acagtggaag gccctgaacg
      481 tgtactgcag taatggctgg gtggaaatcg acaacaacat cgcagagaac gccttacggg
      541 gagtggccgt aggccggaaa aactggctct tcgcgggttc cgacagcggt ggcgaacatg
      601 cggtggtgtt gtactcgctg atcggcacat gccgtctgaa caatgtagag ccagaaaaat
      661 ggctgcgtta cgttattgag catctccagg actggccggc aaaccgggta cgcgatctgt
      721 tgccct
//
LOCUS       DADMJB010000370          689 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.376, whole genome shotgun sequence.
ACCESSION   DADMJB010000370 DADMJB010000000
VERSION     DADMJB010000370.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 689)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.376"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            205..393
                     /locus_tag="JN078_004315"
     CDS             205..393
                     /locus_tag="JN078_004315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1187 family protein"
                     /protein_id="HAY9043252.1"
                     /translation="MYKITATIEKEGGSPASWTRYSKTKLTKSECEKMLSGEKEAGVS
                     REQKVKLINFNCEKLQSS"
     gene            513..659
                     /locus_tag="JN078_004316"
     CDS             513..659
                     /locus_tag="JN078_004316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001377407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excisionase XisR"
                     /protein_id="HAY9043253.1"
                     /translation="MVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKR
                     GIIW"
BASE COUNT          235 a          129 c          162 g          163 t
ORIGIN      
        1 acctcccgct catgggaaag aatcaaaggt atggactggc cgacaatcaa agctggtcgt
       61 aatgcactat ggattgaact ggaaggcgtt gaatatgcat tcccggatcc acaaacacaa
      121 aacgaaacgc aacaagcagg atacgatgag aatattccgg tgtaaaacca agtgcatttt
      181 gggaaaatat taatggaggt gttcatgtat aaaattacag ccactattga aaaggaaggt
      241 ggttctcctg ccagctggac aagatactca aagacaaaac taacgaaatc agaatgcgaa
      301 aaaatgctct caggggaaaa agaagctggc gtttccagag agcagaaagt aaaattgata
      361 aattttaatt gcgagaaact tcagtcctcg tgaattgcat tgtattcaaa ttaaaacttc
      421 atagctgatt attaataatc aacatcgggc gtcaatttca gcctaacatt ggcgcctgcc
      481 agaggtgatg cgatggcttt aatgaagagt ggatggttga atacggcctg atgcttcgca
      541 ctggtctggg tgccagacaa attgaagcat accgccagaa ctgttgggtg gaaggcttcc
      601 acttcaaacg agtatctcct ttagggaagc cagacagtaa gcgagggatt atctggtaaa
      661 actatccgaa gataaatcag tttatcaaa
//
LOCUS       DADMJB010000371          672 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.377, whole genome shotgun sequence.
ACCESSION   DADMJB010000371 DADMJB010000000
VERSION     DADMJB010000371.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 672)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.377"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            193..462
                     /locus_tag="JN078_004317"
     CDS             193..462
                     /locus_tag="JN078_004317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000079945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043254.1"
                     /translation="MAQVNMSVRIDAELKDAFMAAAKSMDRNGSQLIRDFMRQTVERQ
                     HNSWFRDQVAAGRQQLECGDVLPHDMVESSAAAWRDEMSRKIADK"
     gene            459..586
                     /locus_tag="JN078_004318"
                     /pseudo
     CDS             459..586
                     /locus_tag="JN078_004318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001553778.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
BASE COUNT          167 a          154 c          197 g          154 t
ORIGIN      
        1 ctgtcagcgc cagtgatagg acaggtgaaa cctgtcaata cgtaccggct tacgccgggc
       61 ttcggcggtt ttactcctct gccatatgca acaacggagt gccgccttac atgccgctgg
      121 cgcggcatat cctggtgacg atatctgaac agttatatac tgtgtatata cgtggtaatg
      181 acgaggtggc aaatggcaca ggttaatatg agtgtaagaa tcgacgcaga actgaaggat
      241 gcttttatgg ccgctgcaaa aagcatggac cgtaatggct ctcagttaat ccgggatttt
      301 atgcgccaga ccgttgaacg gcagcacaat tcttggttcc gtgaccaggt tgcggcaggc
      361 cgtcagcaac tcgaatgcgg tgatgtgctt ccccatgaca tggtcgaatc ctctgctgct
      421 gcatggcggg atgaaatgag caggaagatt gctgataaat gatggagatg ttctggacca
      481 tgctggccat ccaggacagg aagcgcattc gtagtacatt gcggagcaga acctgatggc
      541 cgccattgaa ccggacgaac ggattggtta ttcagccagc agcctggcag ggcagccgta
      601 taaaggccgc aacggtcgtg tggaaggaac atctggacca cacaaggtag cgtgtaacgt
      661 tattttgtgt ga
//
LOCUS       DADMJB010000372          664 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.378, whole genome shotgun sequence.
ACCESSION   DADMJB010000372 DADMJB010000000
VERSION     DADMJB010000372.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 664)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.378"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(33..305)
                     /locus_tag="JN078_004319"
     CDS             complement(33..305)
                     /locus_tag="JN078_004319"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043255.1"
                     /translation="MELQLSDKGVIKMKAIQCCYFLALVSSNLMAGVMGNDNIFLSNS
                     DSAALYCVAKIFPDGENILIYKVNIINASSKKDVFFMKAQHQPTMT"
     gene            complement(271..664)
                     /locus_tag="JN078_004320"
                     /pseudo
     CDS             complement(271..664)
                     /locus_tag="JN078_004320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312891.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4329 domain-containing protein"
BASE COUNT          195 a          129 c           81 g          259 t
ORIGIN      
        1 attcataggc atatgacatt cccccgcccc cattatgtca ttgtgggttg atgttgggct
       61 ttcataaaaa aaacatcttt ttttgaacta gcattaatta tatttacttt atatattaaa
      121 atattttctc catctggaaa tattttagcc acacaatata aagcagctga atccgaatta
      181 cttaaaaata tattatcatt acccataact ccagccatta aattactgga gactaaagca
      241 aggaaataac aacattgtat tgccttcatt ttaattactc ccttgtctga taattgtaac
      301 tccattccct ttagctttgg gattatattt tagataggtg ttatttggtg ttcccaagta
      361 actgcttgta ttcttttttt cccattccat tcatataaga attcgttaaa tctttgcttg
      421 aaaaatttag actatcataa acatcatttt cttttgttac tttatttcct ttatcgtcag
      481 agtaaaaacc gtgagtgtga taatcgccta ctctctctga accttcaggg cattttatat
      541 ttcgcaagtc tacactatca ttatcatttg aacttatcgg attcatgggg aaatattcac
      601 cttgcttctt acatattagt ccaccatatt ctttattctc gttaattgat tctccattac
      661 acat
//
LOCUS       DADMJB010000373          658 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.379, whole genome shotgun sequence.
ACCESSION   DADMJB010000373 DADMJB010000000
VERSION     DADMJB010000373.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 658)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.379"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(66..596)
                     /locus_tag="JN078_004321"
     CDS             complement(66..596)
                     /locus_tag="JN078_004321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAY9043256.1"
                     /translation="MSITGVNIGRLFREGFSNYDPIGALNAMASQRTKEARGGELQIN
                     ELLPASLDAAKAHGLTERDVYEATDYYKTPRGQQPGGATKMLFSHAQKTLAWDAFAFT
                     EVLLTQPVMVVVGEKVGAFGAYRDGLEVYGRAMVSQDRQLVSLPDFSHYELYDKPEAV
                     QEALEKVIPFFNPHLG"
BASE COUNT          167 a          177 c          137 g          177 t
ORIGIN      
        1 atggcgggct atctgaccgc cagcaccaag aatcagtaca tttttcataa tatttctcat
       61 gaaacttatc ccagatgggg gttgaaaaaa ggaataactt tttccagcgc ctcctgaact
      121 gcttccggtt tgtcatacag ttcataatgt gagaaatcgg gtaatgaaac taactgacga
      181 tcctgcgaaa ccatcgcccg gccatagact tccagtccat cacgataagc accgaaggca
      241 ccgacttttt caccaacgac taccatcacc ggctgagtca gtaacacttc agtaaatgcg
      301 aaggcatccc aggccagcgt tttctgtgca tgtgagaaca acatttttgt cgcacctccc
      361 ggttgttgcc cgcgtggtgt tttatagtag tcagttgctt cataaacatc gcgttcggtc
      421 agtccatggg cttttgctgc atccaggctg gcgggaagta attcgttgat ctgtaattct
      481 ccaccacgag cctctttggt tcgttgcgac gccattgcat tcaatgcgcc aatcggatcg
      541 taattgctga aaccttcccg aaaaagacgc ccgatattaa cacccgtaat actcactact
      601 gctttaattc gtttttctgt cagcgcggca ttaatggcat agtcaccacc cccacaca
//
LOCUS       DADMJB010000374          656 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.380, whole genome shotgun sequence.
ACCESSION   DADMJB010000374 DADMJB010000000
VERSION     DADMJB010000374.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 656)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 656)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.380"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            215..574
                     /locus_tag="JN078_004322"
     CDS             215..574
                     /locus_tag="JN078_004322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001331208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1889 family protein"
                     /protein_id="HAY9043257.1"
                     /translation="MQIKVIYSLIDNMVNFKDKNMPAVIDKALDFIGAMDVSAPTPSS
                     MNESTAKGIFKYLKELGVPASAADITARADQEGWNPGFTEKMVGWAKKMEFGERTVIK
                     NPEYFSTYMQEELKALV"
BASE COUNT          211 a          127 c          131 g          187 t
ORIGIN      
        1 aactatataa ataaacataa ccatgccgtt gtgttcgccc ttcgattagc acctctggtt
       61 ttctttctta gctgaacaat ctggttatag cgtgcggact gaccgttaat tttctccatc
      121 ttactggata acacaccatg agctgctacc tttaaaacac ctgaatgtca acaggttaac
      181 tcgtgccata tcgttataat ccctttgata ttagatgcaa attaaggtca tatatagcct
      241 tatcgataac atggttaatt ttaaggataa gaatatgcct gctgtaatag ataaagccct
      301 ggatttcatt ggtgccatgg atgtatcagc gccaacacca agttcgatga atgaaagcac
      361 agcgaaggga atctttaaat atttaaaaga actgggagta cccgcgagtg ccgctgatat
      421 tacggcgcga gctgaccagg aaggctggaa ccctgggttc acggaaaaaa tggttggatg
      481 ggcaaaaaaa atggagtttg gtgaacgcac tgtaattaaa aatcctgaat acttttcaac
      541 atatatgcag gaagaactaa aagcactggt ctgagtttaa tttatatcag cataaatggg
      601 tcaggacgct tttaatcaca tataaaaagc gtcctttttc tcacaatcaa ataatc
//
LOCUS       DADMJB010000375          626 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.381, whole genome shotgun sequence.
ACCESSION   DADMJB010000375 DADMJB010000000
VERSION     DADMJB010000375.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 626)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.381"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            2..238
                     /locus_tag="JN078_004323"
     CDS             2..238
                     /locus_tag="JN078_004323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000896126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF417 family protein"
                     /protein_id="HAY9043258.1"
                     /translation="MAFTTPLVTLSFLITTPEAWVSALGDAHYGFPYLSGAGRLVLKD
                     TLMLAGAVMIMADSAREILKQRSNESSSTLKTEY"
     gene            complement(398..>626)
                     /locus_tag="JN078_004324"
     CDS             complement(398..>626)
                     /locus_tag="JN078_004324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308365.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HAY9043259.1"
                     /translation="ISQVILRWNIQRGVVVIPKSTHQQRIEENFAIWDFSLTEKEMAQ
                     ISSLDLGYVGESVKHFNPEFVRGCLAVKIHD"
BASE COUNT          181 a          140 c          122 g          183 t
ORIGIN      
        1 gatggcattt accacgccgc tggtaacact ctcattttta atcaccaccc cggaggcatg
       61 ggtatccgca ttgggtgacg ctcattatgg tttcccttat ttatccggtg ctggtcgctt
      121 ggtattgaaa gatactctga tgctggcagg tgctgtcatg ataatggcag attcggcgcg
      181 ggaaattctt aaacaacgca gtaatgaatc cagttcaacg ttaaaaactg aatattgata
      241 atccgaacac tgtctgttgt tcactttttc aggcgtcagg ccccctttct gatgatgaag
      301 actgacgcca tattaccgga gatatgacag agtgaagatc aatatcactc ccctgttaaa
      361 agattcttgt cgtctcaggt aaaatatatg attaatatca atcatgtatt tttacagcaa
      421 gacaaccacg aacaaattca ggattaaaat gttttaccga ctccccaaca taacccaaat
      481 caagcgaact aatttgtgcc atttctttct ctgtcagtga gaaatcccag atagcaaaat
      541 tttcttcgat acgctgttga tgtgtcgatt tcggaataac gaccactccc cgttgaatat
      601 tccaacgcag aatgacttga gaaatc
//
LOCUS       DADMJB010000376          625 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.382, whole genome shotgun sequence.
ACCESSION   DADMJB010000376 DADMJB010000000
VERSION     DADMJB010000376.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.382"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..247)
                     /locus_tag="JN078_004325"
     CDS             complement(<1..247)
                     /locus_tag="JN078_004325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000484566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043260.1"
                     /translation="MFPVSSIGNDISSDLVRRKMNDLPEIPIENNLEALAPGIEKLKQ
                     TSIQMVTLLNALQPGGKCIITGDFQKELAYLQNVILYN"
     gene            complement(269..>625)
                     /locus_tag="JN078_004326"
     CDS             complement(269..>625)
                     /locus_tag="JN078_004326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417590.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043261.1"
                     /translation="AITALNFYQGDVPSVMIRIQPENMSPFIIDISTGEHDNYIIQTL
                     DVGTFAPFGEQCTCSAVNKKELECIKETISKYCAKFTQKEAILTAPTHFNKTCITSDC
                     WQILFFSPDHFNNDFY"
BASE COUNT          197 a           97 c          115 g          216 t
ORIGIN      
        1 cattataaag aattacattt tgtaagtacg ctaattcttt ttgaaaatca ccagtgataa
       61 tacattttcc acctggttgt aacgcgttaa gtaaagtgac catttgaata gaggtctgtt
      121 ttagtttttc tatacctggt gctagtgctt cgagattatt ttctatgggg atttcaggaa
      181 ggtcattcat ttttcgacgg actaaatcac tactaatatc attaccaatt gatgaaacag
      241 ggaacattat tttatccttt ataaataatc aataaaaatc attattaaaa tgatcgggtg
      301 aaaaaaagag aatttgccaa caatctgaag taatgcaggt tttattaaag tgcgtagggg
      361 ctgttaagat ggcttctttt tgggtgaact ttgcgcaata cttagaaatc gtctccttaa
      421 tacattccag ctctttttta ttgacggctg agcaagtaca ttgttcacca aaaggtgcaa
      481 aagtgcctac atctaatgtt tgtatgatat aattatcatg ttctcctgta gaaatatcta
      541 tgatgaatgg actcatattt tccggttgga ttcggatcat gacagaagga acatcgcctt
      601 gatagaaatt caatgcagta attgc
//
LOCUS       DADMJB010000377          625 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.383, whole genome shotgun sequence.
ACCESSION   DADMJB010000377 DADMJB010000000
VERSION     DADMJB010000377.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.383"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>625
                     /locus_tag="JN078_004327"
     CDS             <1..>625
                     /locus_tag="JN078_004327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000015178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043262.1"
                     /translation="ETDIALPGPLPFILSRTYSSYRTKTPAPVGSLGPGWKMPADIRL
                     QLRDNTLILSDNGGRSLYFEHLFPGEDGYSRSESLWLVRGGVAKLDEGHRLAALWQAL
                     PEELRLSPHRYLATNSPQGPWWLLGWCERVPEADEVLPAPLPPYRVLTGLVDRFGRTQ
                     TFHREAAGEFSGEITGVTDGAGRHFQLVLTTQAQRAEEARQQAISGGT"
BASE COUNT          115 a          197 c          212 g          101 t
ORIGIN      
        1 gaaaccgaca tcgccctgcc cggcccgctg ccgttcatcc tctcccgcac ctacagcagt
       61 taccggacaa aaacgcccgc gccggtgggg agcctcggcc ccggctggaa aatgcctgcg
      121 gatatccgct tacagctgcg cgataacaca ctgatactca gtgataacgg cggcagaagc
      181 ctgtattttg agcacctgtt tcccggtgag gacggttaca gccgcagcga gtcactgtgg
      241 ctggtgcgcg gcggcgtggc gaaactggat gaaggtcacc ggctggccgc actctggcag
      301 gcgctgccgg aagaactccg cttaagtccg catcgttatc tggcgacaaa cagtccgcag
      361 gggccgtggt ggctgctcgg ctggtgtgag cgggtgccgg aagcggatga ggtgctgcct
      421 gcgccgctgc cgccgtaccg ggtactgacc gggctggtgg accgcttcgg gcgcacacag
      481 acgttccacc gcgaagccgc cggtgaattc agcggcgaaa tcaccggcgt gacggatggt
      541 gccgggcgtc acttccaact ggtactgacc acgcaggcgc agcgggcaga agaagcccgg
      601 cagcaggcca tttccggcgg gacgg
//
LOCUS       DADMJB010000378          605 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.384, whole genome shotgun sequence.
ACCESSION   DADMJB010000378 DADMJB010000000
VERSION     DADMJB010000378.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 605)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.384"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>605
                     /locus_tag="JN078_004328"
     CDS             <1..>605
                     /locus_tag="JN078_004328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000151282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="antA/AntB antirepressor family protein"
                     /protein_id="HAY9043263.1"
                     /translation="RIDQYGFIAGTDFIRVENLSTPKRASAKTRQQIEHDYLLSLDMA
                     KEVAMVERNEQGRAIRRYFIQCEEELQRSVPEIAARYRRQLKARLSAANNFKPMCDAL
                     NMARAEMGKTTQQRHYSNESNMIARIVLGGMTAKQWAQANGITGEPRDSMNAAQLEHL
                     AYLESTNITLIDMGMEYEQRKGELTRLSQRWLAKRLEVNHA"
BASE COUNT          168 a          161 c          164 g          112 t
ORIGIN      
        1 ccgaattgac cagtacggtt ttattgccgg aaccgatttt atccgtgttg aaaatttgag
       61 cacgccaaaa cgggcgagcg caaaaactcg ccagcaaata gagcatgatt acctgctatc
      121 gctggatatg gctaaagaag tggcaatggt tgaacgcaac gagcagggcc gcgctatccg
      181 ccgttatttc atccagtgcg aggaagaatt acagcgtagc gtgcctgaaa tcgccgcccg
      241 ctatcgtcgc cagctaaaag cccgtctcag tgccgcaaac aactttaagc caatgtgcga
      301 tgcgctgaat atggcccgtg ccgagatggg caaaacgacg cagcagcgcc actacagcaa
      361 cgagagcaac atgatcgccc gtatcgtgct gggtggcatg acggcgaagc agtgggcgca
      421 ggcaaatggc attactggcg aaccacggga cagcatgaac gcagcacagc ttgaacacct
      481 cgcctatctc gaaagcacca atatcacgtt aattgatatg ggcatggaat atgagcagcg
      541 caaaggagaa ctcacccgcc tgtcgcaacg ctggctcgct aaacgtctgg aggtaaacca
      601 tgcgt
//
LOCUS       DADMJB010000379          592 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.385, whole genome shotgun sequence.
ACCESSION   DADMJB010000379 DADMJB010000000
VERSION     DADMJB010000379.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 592)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.385"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            244..>592
                     /locus_tag="JN078_004329"
     CDS             244..>592
                     /locus_tag="JN078_004329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY9043264.1"
                     /translation="MSKKLGFALSGLMLAMVAGTASADMDGGQLNISGLVVDNTCETR
                     VDGGNKDGLILLQTATVGEIDAGVLNDTVGAKAKPFSITVDCSKANPNPGSTAKMTFG
                     SVFFGNSKGTLNND"
BASE COUNT          171 a          111 c          122 g          188 t
ORIGIN      
        1 atcgccatac cctaaccaat tgcacttgtg aatttatttt tgcttaattt tgaattaaga
       61 aaatttaatt tgttcaaaag cccttaaagt gcacaatagg cgtcctaatg aacaatggtt
      121 gtaaattttg gtaacaaata tcattgctca ttaatatcta gcatctgctt ataacatttg
      181 tgtcatgaat agtcattctt caaaccagta gtctgactaa tggaatttta ttcaaggatt
      241 tttatgtcta aaaaattagg ttttgccctg tctggtctta tgctggcaat ggttgcaggt
      301 actgcttctg ctgatatgga tggtggtcag ttaaatatca gtggtctggt tgttgataac
      361 acctgtgaaa cccgcgttga cggcggtaat aaagatggtc tgatcctgct gcaaactgca
      421 actgttggtg aaatcgatgc tggcgtgctg aatgacaccg ttggcgctaa agccaaacct
      481 ttcagcatca ccgttgactg cagcaaagca aatccgaatc caggtagtac agctaaaatg
      541 accttcggtt ctgttttctt tggtaatagc aaaggaacgc tgaacaacga ca
//
LOCUS       DADMJB010000380          587 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.386, whole genome shotgun sequence.
ACCESSION   DADMJB010000380 DADMJB010000000
VERSION     DADMJB010000380.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 587)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.386"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(41..>587)
                     /locus_tag="JN078_004330"
     CDS             complement(41..>587)
                     /locus_tag="JN078_004330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000240539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="replication protein C"
                     /protein_id="HAY9043265.1"
                     /translation="AVTADAMVVKGSYRALAKEIGAEVDSGGALKHIQDCIERLWKVS
                     IIAQNGRKRQGFRLLSEYASDEADGRLYVALNPLIAQAVMGGGQHVRISMDEVRALDS
                     ETARLLHQRLCGWIDPGKTGKASIDTLCGYVWPSEASGSTMRKRRQRVREALPELVAL
                     GWTVTEFAAGKYDITRPKAAG"
BASE COUNT          101 a          203 c          172 g          111 t
ORIGIN      
        1 aaaagataaa aatgtcttgt ttacaataga gtgggggggg tcagcctgcc gccttgggcc
       61 gggtgatgtc gtacttgccc gccgcgaact cggttaccgt ccagcccagc gcgaccagct
      121 ccggcaacgc ctcgcgcacc cgctggcggc gcttgcgcat ggtcgaacca ctggcctctg
      181 acggccagac atagccgcac aaggtatcta tggaagcctt gccggttttg ccggggtcga
      241 tccagccaca cagccgctgg tgcagcaggc gggcggtttc gctgtccagc gcccgcacct
      301 cgtccatgct gatgcgcaca tgctggccgc cacccatgac ggcctgcgcg atcaaggggt
      361 tcagggccac gtacaggcgc ccgtccgcct cgtcgctggc gtactccgac agcagccgaa
      421 acccctgccg cttgcggcca ttctgggcga tgatggatac cttccaaagg cgctcgatgc
      481 agtcctgtat gtgcttgagc gccccaccac tatcgacctc tgccccgatt tcctttgcca
      541 gcgcccgata gctacctttg accaccatgg catcagcggt gacggcc
//
LOCUS       DADMJB010000381          565 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.387, whole genome shotgun sequence.
ACCESSION   DADMJB010000381 DADMJB010000000
VERSION     DADMJB010000381.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 565)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.387"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>565
                     /locus_tag="JN078_004331"
     CDS             <1..>565
                     /locus_tag="JN078_004331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000935451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HAY9043266.1"
                     /translation="SVGLCLVHVACDKRPWLEGLNVEMDWQMSGKPLLLYLDNAAEFK
                     SEALRRGCEQHGIRLDYRPLGQPHYGGIVERIIGTAMQMIHDELPGTTFSNPDQRGDY
                     DSENKAALTLRELERWLTLAVGTYHGSVHNGLLQPPAARWAEAVARVGVPAVVTRATS
                     FLVDFLPILRRTLTRTGFVIDHIHYYA"
BASE COUNT          100 a          190 c          175 g          100 t
ORIGIN      
        1 tttcggttgg cctgtgcctc gtgcatgtcg cctgcgacaa gcgcccttgg ctggaaggac
       61 tgaacgtgga aatggattgg cagatgagcg gcaagccctt gctgctctac ctagacaacg
      121 cggccgagtt caagagcgag gccctgcgcc ggggttgcga gcagcatggc atccggctgg
      181 actatcgccc gctgggacag ccgcactatg gcggcatcgt ggaacggatc atcggcacgg
      241 cgatgcagat gattcacgac gaactgccgg gaacgacctt ctccaaccct gaccagcgcg
      301 gcgactacga ttccgaaaac aaggccgccc tgacgctgcg cgagctagag cgctggctca
      361 cattggcggt cggcacctac cacggttcgg tgcacaacgg cctgctccaa ccgccggccg
      421 cgcgctgggc cgaggccgtg gcgcgtgtcg gcgtaccggc cgtcgtcaca cgcgctactt
      481 cgttcctggt cgattttctg ccgatcctcc ggcgcacgct gacccgcacc ggctttgtca
      541 tcgaccacat ccactactac gccga
//
LOCUS       DADMJB010000382          559 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.388, whole genome shotgun sequence.
ACCESSION   DADMJB010000382 DADMJB010000000
VERSION     DADMJB010000382.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 559)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.388"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            3..>559
                     /gene="fimZ"
                     /locus_tag="JN078_004332"
     CDS             3..>559
                     /gene="fimZ"
                     /locus_tag="JN078_004332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001719888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria biosynthesis transcriptional regulator
                     FimZ"
                     /protein_id="HAY9043267.1"
                     /translation="MIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRP
                     VDLIIMDIDLPGTDGFTFLKRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKC
                     NDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTVTVLSNREVTILRYLVSGL
                     SNKEIADKLLLSNKTVSAHKSNIYG"
BASE COUNT          180 a          103 c          106 g          170 t
ORIGIN      
        1 cggtgatcat tatggatact catcctatca tcagaatgtc tattgaagtt ctgttgcaaa
       61 aaaacagtga attgcagatt gtcctgaaaa cggatgatta ccgcataacc atcgattatc
      121 tccgaacccg tcctgttgat ttaatcatta tggatataga cttgcccgga acagacggtt
      181 ttaccttcct gaaaaggatc aaacaaatcc agagcacagt gaaagtgtta tttttatcat
      241 cgaaatcaga atgcttttat gctggcagag cgatacaagc tggtgctaac ggttttgtca
      301 gtaaatgcaa tgatcagaat gatatttttc atgccgttca gatgatcctc tccggataca
      361 cgttttttcc cagcgaaacg cttaactata taaaaagcaa taaatgtagt acgaatagtt
      421 caacggtcac tgtgctatct aatcgtgaag tgaccatatt acgttatctg gttagcggat
      481 tatctaataa agaaattgcc gataagttat tgcttagcaa taaaacagtt agtgcgcata
      541 aatctaatat ttatggcaa
//
LOCUS       DADMJB010000383          544 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.389, whole genome shotgun sequence.
ACCESSION   DADMJB010000383 DADMJB010000000
VERSION     DADMJB010000383.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 544)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.389"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            11..>544
                     /locus_tag="JN078_004333"
     rRNA            11..>544
                     /locus_tag="JN078_004333"
                     /product="23S ribosomal RNA"
BASE COUNT          161 a          117 c          164 g          102 t
ORIGIN      
        1 aaacatcttc gggttgtgag gttaagcgac taagcgtaca cggtggatgc cctggcagtc
       61 agaggcgatg aaggacgtgc taatctgcga taagcgtcgg taaggtgata tgaaccatta
      121 taaccggcga tttccgaatg gggaaaccca gtgtgattcg tcacactatc attaactgaa
      181 tccataggtt aatgaggcga accgggggaa ctgaaacatc taagtacccc gaggaaaaga
      241 aatcaaccga gattccccca gtagcggcga gcgaacgggg agcagcccag agcctgaatc
      301 agtgtgtgtg ttagtggaag cgtctggaaa ggcgtgcgat acagggtgac agccccgtac
      361 acaaaaatgc acatattgtg agctcgatga gtagggcggg acacgtggta tcctgtctga
      421 atatgggggg accatcctcc aaggctaaat actcctgact gaccgatagt gaaccagtac
      481 cgtgagggaa aggcgaaaag aaccccggcg aggggagtga aaaagaacct gaaaccgtgt
      541 acgt
//
LOCUS       DADMJB010000384          544 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.390, whole genome shotgun sequence.
ACCESSION   DADMJB010000384 DADMJB010000000
VERSION     DADMJB010000384.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 544)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.390"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(50..>544)
                     /locus_tag="JN078_004334"
     CDS             complement(50..>544)
                     /locus_tag="JN078_004334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000824385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HAY9043268.1"
                     /translation="SVDYNIEGFGFVGAYSKSDRTNEQAGDGYGDNAEVWSLAAKYDA
                     NNIYAAMMYGETRNMTVLANDHFANKTQNFEAVVQYQFDFGLRPSLGYVYSKGKDLYA
                     RDGHKGVDADRVNYIEVGTWYYFNKNMNVYTAYKFNLLDKDDAAITDAATDDQFAVGI
                     IYQF"
BASE COUNT          150 a          119 c          111 g          164 t
ORIGIN      
        1 tcaggctagt gttatgtttt acagtaacac gccgcggcgc gttggctgat tagaactggt
       61 agatgatacc aactgcaaac tggtcatcag ttgcggcatc ggtaatcgct gcatcgtctt
      121 tatccagcag gttaaatttg tatgctgtgt agacgttcat gttcttattg aagtagtacc
      181 aggtaccaac ttcgatataa tttacgcggt cagcatcaac acctttatgt ccatcacgag
      241 cataaagatc tttgcctttg gaatatacgt agcctaaaga cggacgtaaa ccgaagtcga
      301 actgatactg tacaacagct tcaaagtttt gggttttatt tgcaaaatga tcattagcca
      361 aaacggtcat gttgcgggtt tcaccgtaca tcattgctgc atagatatta tttgcatcat
      421 acttggctgc taatgaccac acttcagcgt tatcaccgta gccgtcacca gcttgttcat
      481 tagtacgatc agatttgcta tatgcaccta caaaaccaaa accttcgatg ttgtagtcta
      541 caga
//
LOCUS       DADMJB010000385          538 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.391, whole genome shotgun sequence.
ACCESSION   DADMJB010000385 DADMJB010000000
VERSION     DADMJB010000385.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 538)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.391"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(107..271)
                     /locus_tag="JN078_004335"
                     /pseudo
     CDS             complement(107..271)
                     /locus_tag="JN078_004335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001135850.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
     gene            complement(258..>538)
                     /locus_tag="JN078_004336"
     CDS             complement(258..>538)
                     /locus_tag="JN078_004336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HAY9043269.1"
                     /translation="APGYWFYRNDEFVFDYRLKAEDERDALLAQVSARTGEWEEDLLL
                     GLISDEDKEKLKACRIYAKSLQAMDFSTITDKATYNAINWPERPDAAA"
BASE COUNT          122 a          143 c          132 g          141 t
ORIGIN      
        1 ctcgtctggg gaatatctcc ccggcagcct tcagggaaaa atatcatcag atgactgctc
       61 aaaaaaaaga acaaatggta gtgtccgcta ttgccagtac acctcacaca cccggcagaa
      121 cggggaagtc atattccccg ttctgtgtgg tgacatggct gaaaacactt ttcagaatcc
      181 ctgcacggtt gtgtatggag gttagtgtaa tggttgcgcc gtccagcggt tctcccgtgg
      241 gcgttttaat cacaccttta agctgcggca tcgggacgct ccggccagtt gatggcgtta
      301 tatgtggctt tatctgtgat ggtgctgaaa tccatcgcct gcagcgattt cgcgtaaata
      361 cgacaggctt tcagcttttc tttatcttcg tcgctgatta accccagcag caggtcttct
      421 tcccattccc ctgtccgggc actgacctga gccagaaggg catcacgctc atcttccgct
      481 ttgagtctgt agtcaaagac aaattcatca ttgcggtaaa accagtaacc cggcgcgg
//
LOCUS       DADMJB010000386          525 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.392, whole genome shotgun sequence.
ACCESSION   DADMJB010000386 DADMJB010000000
VERSION     DADMJB010000386.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 525)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.392"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>525
                     /locus_tag="JN078_004337"
     CDS             <1..>525
                     /locus_tag="JN078_004337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000108506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9043270.1"
                     /translation="LANAKYTAQDATTAQKGIVQLSSATNSTSETLAATSKAVKAVMD
                     ETNKKAPLNSPALTGTPTTPAARQGTNNTQIASTAFVMAAIAALVDSSPDALNTLNEL
                     AAALGNAPNFATTMTNALAGKQPKDATLTALAGLATAADRFPYFTGNDVASLATLTKV
                     GRDILAKSTVAAVIE"
BASE COUNT          140 a          149 c          143 g           93 t
ORIGIN      
        1 cttgctaacg caaaatatac cgctcaggac gccacgacgg cacaaaaagg gatagtccag
       61 ctcagtagtg ccaccaacag cacgtctgaa acactggccg cgacatcgaa agcggttaag
      121 gcggtaatgg atgaaacgaa caagaaagcg cccttaaaca gtcctgcgct gaccggaacg
      181 ccaacaacgc cagctgcgcg acagggaacg aataataccc aaatcgcaag cacggctttc
      241 gttatggctg cgattgccgc ccttgtagat tcgtcacctg acgcactgaa tacgctgaac
      301 gagttagcgg cggcgctggg aaacgccccg aattttgcga ccaccatgac taacgcgctt
      361 gcgggtaagc aaccgaaaga tgccaccctg acggcgctgg ccgggcttgc tactgcggca
      421 gacaggtttc cgtattttac ggggaatgat gtcgccagcc tggcaaccct gacaaaagtc
      481 gggcgggata ttcttgcgaa atcgaccgtt gctgccgtta tcgaa
//
LOCUS       DADMJB010000387          515 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.393, whole genome shotgun sequence.
ACCESSION   DADMJB010000387 DADMJB010000000
VERSION     DADMJB010000387.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.393"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(1..104)
                     /locus_tag="JN078_004338"
                     /pseudo
     CDS             complement(1..104)
                     /locus_tag="JN078_004338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001672075.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1472 domain-containing protein"
     gene            235..515
                     /locus_tag="JN078_004339"
                     /pseudo
     CDS             235..515
                     /locus_tag="JN078_004339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006322674.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          132 a          136 c          126 g          121 t
ORIGIN      
        1 tccccgccag cccggctaag atggaggcac ggcacagccc gcacacgacg ctgaggctac
       61 agagctgaaa acccacaagg ccatgccccg catggccggg taaagcggag ccggcggcga
      121 cttcctttgt gctctgtccg ggaccggcag gaaaaaggcg gggataatga gatggtcacc
      181 cccaccctaa cagcagtacg ctgttaaggt gaatccctta acggagagac catcatacag
      241 aacatcacac ttattggtat cgatctcgga aagcattcct tccacattca ttgtcaagac
      301 aagtctggta aggctcttct gcgtaaaaaa tttacccagt actaaactga tgcagtttct
      361 ggcaacatgt ccgccctcag ttgttgtaat ggaagcctgt gcgggtgcac actttttggc
      421 tcgccgtatc tctgaatttt ggacatgaaa ctaagctgat ttctccacag ttcgttcgcc
      481 cgtttgtcaa aagtaataag aatgattttg ttgat
//
LOCUS       DADMJB010000388          513 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.394, whole genome shotgun sequence.
ACCESSION   DADMJB010000388 DADMJB010000000
VERSION     DADMJB010000388.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.394"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            1..513
                     /locus_tag="JN078_004340"
                     /pseudo
     CDS             1..513
                     /locus_tag="JN078_004340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612086.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
BASE COUNT          126 a          124 c          156 g          107 t
ORIGIN      
        1 tccgtatggt tctggaaagt cagggcgaat atgactcaca atgggcgaca atttgttcca
       61 ttgctccaaa gattggctgt acgccggaga ctctgcgtgt ctgggttcgc cagcatgagc
      121 gggataccgg gggcggtgat ggagggctca ccaccgctga acgtcagcgt ctgaaagagc
      181 tggagcgtga aaatcgtgaa ctgcgccgca gtaacgatat ccttcgccag gcttccgctt
      241 attttgcgaa ggcggagttc gaccgcctct ggaaaaaatg atgccactgc tggataagct
      301 gcgtgagcag tacggggtcg gaccgctatg cagcgaactg catattgccc cgtcaacgta
      361 ttaccactgt cagcaacagc gacatcatcc ggataaacgc agtgcccgtg cgcagcgcga
      421 tgactggctg aagaaagaga tacagcgcgt atacgatgaa aatcacaagg tatacggtgt
      481 gcgtaaagtc tggcgtcagt tgttacggga agg
//
LOCUS       DADMJB010000389          508 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.395, whole genome shotgun sequence.
ACCESSION   DADMJB010000389 DADMJB010000000
VERSION     DADMJB010000389.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.395"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(233..484)
                     /gene="dgcZ"
                     /locus_tag="JN078_004341"
                     /pseudo
     CDS             complement(233..484)
                     /gene="dgcZ"
                     /locus_tag="JN078_004341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416052.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DgcZ"
BASE COUNT          133 a          120 c          109 g          146 t
ORIGIN      
        1 aatgggatga ctaatgaacg gagataatcc ctcacctaac cggccccttg ttacagttgt
       61 gtacaagggg cctgattttt atgacggcga aaaaaaaccg ccagtaaacc ggcggtgaat
      121 gcttgcatgg atagatttgt gttttgcttt tacgctaaca ggcattttcc tgcactgata
      181 acgaatcgtt gacacagtag catcagtttt ctcaatgaat gttaaacgga gcttaaactc
      241 ggttaatcac attttgttcg tcaataaaca tacagcgatt tcttcccgtt tgcttaccct
      301 catacattgc ccggtctgct cttccaatga ccacatccag aggctcttca ggaaatgcgc
      361 gactgacacc tgctgtcacg gtaatgttga tatgcccttc agaatgtgtg atggcatggt
      421 tatcgactaa ctggcaaatt ctgacacctg cacgacatgc ttcttcatca ttagccgctt
      481 tgaggtgtac tggcaatagc ggacacta
//
LOCUS       DADMJB010000390          504 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.396, whole genome shotgun sequence.
ACCESSION   DADMJB010000390 DADMJB010000000
VERSION     DADMJB010000390.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 504)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.396"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>504
                     /locus_tag="JN078_004342"
     CDS             <1..>504
                     /locus_tag="JN078_004342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HAY9043271.1"
                     /translation="PPLEKVMPLLDKLRKLYGVGPVCSELHIAPSTYYHCQQQRHHPD
                     KRSARAQRDDWLKKEILRVYDGNHQVYGVRKVWRQLLREGIRVARCTVARLMAVMGLA
                     GVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDV
                     FAGYIVG"
BASE COUNT          114 a          119 c          155 g          116 t
ORIGIN      
        1 gaccgcctct ggaaaaagtg atgccactgc tggataagct gcgtaagctg tacggggtcg
       61 gaccggtatg cagtgaacta catattgccc cgtcaacgta ttaccactgt cagcaacagc
      121 gacatcatcc tgataaacgc agtgcccgtg cgcagcgcga tgactggctg aagaaagaga
      181 tactgcgcgt atacgatggg aatcatcagg tatacggtgt gcgtaaagtc tggcgtcagt
      241 tgttacggga aggtatcaga gtggccagat gcactgtggc acgtctcatg gcggttatgg
      301 gacttgccgg tgttctccgg ggtaaaaagg tccgtacgac catcagccgg aaagccgttg
      361 ccgcaggcga ccgcgtaaac cgtcagttcg tggcagaacg acctgaccag ctgtgggtgg
      421 ctgattttac ttacgtcagc acatggcagg gcttcgtcta tgtggcgttc attattgatg
      481 tgtttgccgg atacatcgtg gggt
//
LOCUS       DADMJB010000391          500 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.397, whole genome shotgun sequence.
ACCESSION   DADMJB010000391 DADMJB010000000
VERSION     DADMJB010000391.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.397"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>500
                     /locus_tag="JN078_004343"
     CDS             <1..>500
                     /locus_tag="JN078_004343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000833619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HAY9043272.1"
                     /translation="GRLAGDNVPPVVLADDQLDELADLRIIDEGRYCVRLYKAGHIRP
                     SNINAIAHKLAAAGVTDANYYPEGMHSHMRENWREYLERVRGKEPVEEKNHQRKTTLP
                     MSVGSTGYDTQLDYVVKGIIPAVSLCSIYGASGSYKSFLAGSWACHVATGRQWGGRRV
                     AHGAVL"
BASE COUNT          119 a          120 c          161 g          100 t
ORIGIN      
        1 gggcgactgg ctggcgataa tgtgcctccc gttgtgctgg ctgatgatca actggatgaa
       61 ctggcagacc tgagaatcat cgacgagggg cgctattgtg tccggctgta caaggcaggc
      121 cacatcaggc catcaaatat taatgccatt gcgcacaagc tggcggcggc gggtgtaact
      181 gatgcgaatt attaccccga agggatgcac agccatatgc gggagaactg gcgcgaatac
      241 ctggaacggg tgcgcgggaa agagccggtg gaagaaaaaa accaccagcg aaaaaccacg
      301 ctaccgatga gcgttggatc taccggatac gacacgcaac tggattacgt ggttaagggg
      361 attattccgg cggtatcgct atgcagcata tacggggcta gcgggtccta taaatcattc
      421 cttgccggat cgtgggcgtg ccatgttgcc actggtcgcc agtggggagg ccgcagggtt
      481 gcacatggtg cggttctcta
//
LOCUS       DADMJB010000392          450 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.398, whole genome shotgun sequence.
ACCESSION   DADMJB010000392 DADMJB010000000
VERSION     DADMJB010000392.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.398"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..334)
                     /locus_tag="JN078_004344"
     CDS             complement(<1..334)
                     /locus_tag="JN078_004344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707670.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HAY9043273.1"
                     /translation="MTLYQIKPLFQSLLRPTMFWLYKHHVTANHITLTALALSLFTGL
                     LLVLVAQPILFLLLPIVLFIRMALNALDGMLARECNQQTRLGAILNETGDVISDIALY
                     LPFLFLPES"
BASE COUNT          141 a           95 c          108 g          106 t
ORIGIN      
        1 tactttccgg taaaaataaa aacggtaaat agagcgcaat atcggaaata acatcgccag
       61 tttcattcaa aatcgccccc agacgtgttt gctgattgca ctcacgcgcc aacatgccat
      121 ccagcgcatt gagcgccata cggataaaaa gcacgatggg caatagcaaa aagaggatgg
      181 gttgtgccac caacaccaac agcaatccgg taaaaagaga aagcgccagt gccgtaagag
      241 tgatgtgatt cgctgtaacg tggtgcttat aaagccaaaa catcgtcggc cttaacagcg
      301 actgaaagag cggttttatc tggtagagcg tcatttatca ttccgtgata ttcagtttgc
      361 tctatggtgc atcaattgtg atggcggaga tatcacaacg cggagcatca acgtaaattc
      421 ggaatatatc aagatgtggt ggatggtttt
//
LOCUS       DADMJB010000393          434 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.399, whole genome shotgun sequence.
ACCESSION   DADMJB010000393 DADMJB010000000
VERSION     DADMJB010000393.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.399"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..389)
                     /locus_tag="JN078_004345"
     CDS             complement(<1..389)
                     /locus_tag="JN078_004345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HAY9043274.1"
                     /translation="MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAE
                     SGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQAR
                     QRLGSEAVRRVFTKTAQLWHNATPHPH"
BASE COUNT          110 a          109 c          132 g           83 t
ORIGIN      
        1 cagtgcggat gcggcgtggc gttatgccag agctgcgctg ttttcgtgaa cacgcggcgg
       61 acagcctcac ttcccaggcg ctggcgggcc tgaataacgg cactgggggc aacgaagggg
      121 cgattgcccg gcagcatgat gtccaggcga ttcacaatct ggtgaagagg ttctttacgc
      181 tcaagcgcca tgccaacaat acaccagacc atcatttcga ggggaagacg gcgcttgcgt
      241 agcgttacag tacctgattc ggcaaggcaa cgagagatga gttcggggtc gaggtaatcc
      301 cccagagaag tcagtgggtt acgcagagaa tcgtaacggg ataccagatc aagagcctgt
      361 ccaatgtgca taaaaaaatc cggaaacaag tgagcgtttc cggattctta cacagccact
      421 ggatcggtca actg
//
LOCUS       DADMJB010000394          431 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.400, whole genome shotgun sequence.
ACCESSION   DADMJB010000394 DADMJB010000000
VERSION     DADMJB010000394.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 431)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.400"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>431
                     /gene="virK"
                     /locus_tag="JN078_004346"
     CDS             <1..>431
                     /gene="virK"
                     /locus_tag="JN078_004346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="virulence factor VirK"
                     /protein_id="HAY9043275.1"
                     /translation="LTQNGHIAFIGGLQGAPKNTGPDVIRCATRACYGIFPKRIIFEA
                     FCALMKACNISECLAVSEHSHVFRQLRYWYQKRKTFVAVYSDFWESVAGKTCGDWYRL
                     PTQVIRKPLSDIASKKRSEYRKRYALLDYIHETTIRSLDAY"
BASE COUNT          118 a           88 c          102 g          123 t
ORIGIN      
        1 ttctgactca aaatggacac attgctttta ttggcggatt acagggagcc cctaaaaata
       61 ccggacctga tgttattcgg tgcgcaaccc gggcctgtta tgggattttc ccaaaacgga
      121 ttatttttga agcattttgt gcgttgatga aagcttgcaa tatctctgag tgtctggcag
      181 tcagtgagca cagtcatgtt ttccggcaat tgagatactg gtatcagaaa cgcaaaacct
      241 ttgttgcggt ctatagtgat ttctgggagt ctgtagcagg aaaaacctgt ggtgactggt
      301 acagattacc aacccaggtg attcgaaagc cgctaagcga tatagccagt aaaaaacgct
      361 ctgagtaccg aaaacgatac gctttgctgg attatatcca tgaaactact atccgctctt
      421 tggatgcata t
//
LOCUS       DADMJB010000395          416 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.401, whole genome shotgun sequence.
ACCESSION   DADMJB010000395 DADMJB010000000
VERSION     DADMJB010000395.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.401"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..>416)
                     /locus_tag="JN078_004347"
     CDS             complement(<1..>416)
                     /locus_tag="JN078_004347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707257.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY9043276.1"
                     /translation="DIDAALTGTLKMANHLSEIAAAGEKAQQKSRDNLGLKSAATMEA
                     QSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYDI
                     IIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYG"
BASE COUNT           88 a          115 c          108 g          105 t
ORIGIN      
        1 gccgtaaaaa gtaagggatt tggctctgta ccgcggttct gttgtctcag ggcgtgcatc
       61 agtccaccgg atgctgagca ccccttcaaa ccgtgtgtcg ggtatgatga tgtcgtaggg
      121 gccagcaacg gaatattcac ctggcagcgc attccttacc caggccagga aatcactctt
      181 agtgtcaaaa cggataacat cttcaggcag aaaagcacac ccaaagccga atgcgccggg
      241 tatcgccaga cggccttttg tccggtcgta aatgtcgctc tgtgcttcca tcgtggccgc
      301 acttttcagc cccagattat cccgggactt ctgttgtgcc ttttcgcctg ctgctgcgat
      361 ttctgacaga tggttagcca ttttcagagt gccggtcagc gcagcatcaa tgtcat
//
LOCUS       DADMJB010000396          413 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.402, whole genome shotgun sequence.
ACCESSION   DADMJB010000396 DADMJB010000000
VERSION     DADMJB010000396.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 413)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 413)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..413
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.402"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>413
                     /locus_tag="JN078_004348"
     CDS             <1..>413
                     /locus_tag="JN078_004348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY9043277.1"
                     /translation="SCGSRACPSCGKKATDLWIATQLNRLPDCDWVHLVFTLPDTLWP
                     VFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFCAIHTYGRRLNWHPHVHVSVTCGG
                     LNKHGQWKKLSFLKDAMRSRWMWNMRQLLLKAWSE"
BASE COUNT           85 a          110 c          130 g           88 t
ORIGIN      
        1 ctcatgcggc agccgtgcct gcccgtcctg cggaaaaaag gccacagacc tgtggatagc
       61 gacacagctg aatcgtcttc ctgactgcga ctgggtacac ctggtcttca ccctgccgga
      121 cacgctgtgg ccggtgttcg aaagcaaccg gtggctgctg aatgacgtgt gccgtctggc
      181 ggtggagaat ctgctgtatg ccgcccggaa acgggggcag gaacccggta tcttctgcgc
      241 catccacacg tatggccgtc gtctcaactg gcatccgcat gtacatgtgt ctgtaacctg
      301 tggaggtctg aataagcatg gtcagtggaa aaagctgagc ttcctgaaag acgcgatgcg
      361 ttcacggtgg atgtggaata tgcggcagct gcttctgaaa gcgtggtcag agg
//
LOCUS       DADMJB010000397          411 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.403, whole genome shotgun sequence.
ACCESSION   DADMJB010000397 DADMJB010000000
VERSION     DADMJB010000397.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 411)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 411)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.403"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..>411)
                     /locus_tag="JN078_004349"
     CDS             complement(<1..>411)
                     /locus_tag="JN078_004349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001063816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HAY9043278.1"
                     /translation="WGPAHRRWLSKYSFESPWRQLAFDEHRRTIEDRQAQCERLESAL
                     KEAVTEWRLYPVVEALQAMRGIQFITAVGLISELGDLTRFEHPRQLMSWFGITPSEYS
                     SGGSRHQGSITKAGNSYARKLLVEAAWSYRHPAR"
BASE COUNT           90 a          114 c          100 g          107 t
ORIGIN      
        1 atgcgtgccg gatgacggta actccacgct gcctcgacca atagctttct ggcatagctg
       61 tttccggctt tggtaatgct gccctgatgt ctgcttccac ccgatgaata ttctgatggc
      121 gtgataccaa accatgacat cagttgtcgt ggatgttcaa aacgggtcag atcacccagt
      181 tcagaaatta atccaaccgc agtaataaac tgaatccctc gcatggcttg cagcgcctct
      241 actaccggat acagcctcca ttcggtaacg gcctccttca gggcggattc cagccgttca
      301 cattgtgcct gccggtcttc tattgtacga cggtgttcgt caaaagctaa ttgtcgccag
      361 ggactttcga atgagtattt gctgagccag cgtcggtgtg cagggcccca a
//
LOCUS       DADMJB010000398          400 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.404, whole genome shotgun sequence.
ACCESSION   DADMJB010000398 DADMJB010000000
VERSION     DADMJB010000398.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 400)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.404"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..191)
                     /locus_tag="JN078_004350"
     CDS             complement(<1..191)
                     /locus_tag="JN078_004350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4754 domain-containing protein"
                     /protein_id="HAY9043279.1"
                     /translation="MGKEYKTLINKALERFYFRLSASGAHAERAARDSLTRAIRSLYD
                     VAFYADDLDALNELSELICA"
     gene            complement(203..>400)
                     /locus_tag="JN078_004351"
     CDS             complement(203..>400)
                     /locus_tag="JN078_004351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043280.1"
                     /translation="TPAGKNGADEATYVYLNGTRLLVELPYQTVQEIISEAEKARQVN
                     GDEPYIEIICMDSEAEIQKAD"
BASE COUNT           99 a           98 c           87 g          116 t
ORIGIN      
        1 gcacagatca gctcggaaag ttcgttaagt gcatccagat catcagcgta aaaagccacg
       61 tcatacagac ttcggattgc tctggtcaat gagtcacggg ccgcacgttc agcatgagcg
      121 cctgatgcac ttaagcgaaa ataaaaacgc tcaagtgctt tgttaatgag agttttatat
      181 tctttgccca tcacaacgcc ctttaatctg ctttctgtat ttcagcttct gaatccatac
      241 aaataatttc gatatagggt tcatcgccat taacctggcg tgccttttca gcttcgctaa
      301 tgatttcttg tacggtctgg tacggaagtt ccacaagcag tcgcgtgccg ttcagataaa
      361 cgtaagtggc ttcgtcggct ccgtttttac ccgccggagt
//
LOCUS       DADMJB010000399          382 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.405, whole genome shotgun sequence.
ACCESSION   DADMJB010000399 DADMJB010000000
VERSION     DADMJB010000399.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 382)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 382)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.405"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            184..339
                     /locus_tag="JN078_004352"
                     /pseudo
     CDS             184..339
                     /locus_tag="JN078_004352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343613.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS256 family transposase"
BASE COUNT          120 a           82 c           98 g           82 t
ORIGIN      
        1 gagagcagaa cgggatctat acttttgcgg gtcaacataa gaggatgagt ccttaataaa
       61 acaggtcctc agagaataca tattctgcgg agcgtgcggc aacaacagga cgaacagggg
      121 cggttttcaa tttgcagccg tcaggctgcc gtggttcact ccaacaacgg agacaggtaa
      181 attatggacg aaaagaagct taaagccctt gcggctgaac tggctaaagg cctcaaaacc
      241 gaggccgacc tcaatcagtt ttcccgtatg cagacgaaat taactgtcga aacggtgctt
      301 aatgaggaac taactgacca tctcgggcat gaaaaaagct acatccggta gtaaacatta
      361 tcagtgggtt atgcgatatg at
//
LOCUS       DADMJB010000400          378 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.406, whole genome shotgun sequence.
ACCESSION   DADMJB010000400 DADMJB010000000
VERSION     DADMJB010000400.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 378)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 378)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..378
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.406"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>378
                     /locus_tag="JN078_004353"
     CDS             <1..>378
                     /locus_tag="JN078_004353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000935451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043281.1"
                     /translation="VERVIHELLQKRFLTKQKRSLAAFHREVTQVCKAQKLRVPARNT
                     VALRIASLDPRKVIRRREGQDAARDLQGVGGEPPAVTAPLEQIDHTVIDLIVVDDRDR
                     QPIGRPYLTLAIDVFTRCVLGMVV"
BASE COUNT           72 a          127 c          115 g           64 t
ORIGIN      
        1 gtcgagcgcg tcatccacga gctactgcaa aagcggttcc tgaccaagca gaagcgcagc
       61 ctagcggcct ttcaccgcga agtcactcag gtgtgcaagg ctcaaaaact gcgagtgccg
      121 gcgcgcaata ccgtggcctt acggatcgct agccttgacc cgcgcaaggt catccgccgg
      181 cgggaaggcc aggatgccgc tcgtgaccta caaggtgtgg gcggcgagcc tcctgccgtg
      241 accgcgccgc tggagcagat agaccatacg gtcatcgacc tgatcgtggt cgatgaccgc
      301 gaccggcaac ctattggccg cccgtacctg accctcgcca tcgacgtgtt cacccgctgc
      361 gtgctcggca tggtcgtc
//
LOCUS       DADMJB010000401          371 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.407, whole genome shotgun sequence.
ACCESSION   DADMJB010000401 DADMJB010000000
VERSION     DADMJB010000401.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.407"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..313
                     /locus_tag="JN078_004354"
     CDS             <1..313
                     /locus_tag="JN078_004354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS21 family transposase"
                     /protein_id="HAY9043282.1"
                     /translation="QYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKH
                     ETIQARPCDRWLEEQQSMLALPPEKKEYDVHPGENLVNFDKHPLHHPLSIYDSFCRGV
                     A"
     gene            310..>371
                     /locus_tag="JN078_004355"
     CDS             310..>371
                     /locus_tag="JN078_004355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY9043283.1"
                     /translation="MMMELQHQRLMALAGQLQLE"
BASE COUNT           96 a          109 c           93 g           73 t
ORIGIN      
        1 gcagtacacc cgtaacagtt tttacatccc actaatgact cgcctgcgcc cgatggggat
       61 cactgtcgat gttgaaacag ccaaccgcca cggtctgcgc tggctgcacg atgtcgctaa
      121 ccaacgaaag catgaaacaa tccaggcccg tccctgcgat cgctggctcg aagagcagca
      181 gtccatgctg gcactgcctc cggagaaaaa agagtatgac gtgcatcctg gtgaaaatct
      241 ggtgaacttc gataaacacc ccctgcatca tccactctcc atctacgact cattctgcag
      301 aggagtggcg tgatgatgga actgcaacat caacgactga tggcgctcgc cgggcagttg
      361 caactggaaa g
//
LOCUS       DADMJB010000402          370 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.408, whole genome shotgun sequence.
ACCESSION   DADMJB010000402 DADMJB010000000
VERSION     DADMJB010000402.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.408"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            1..370
                     /locus_tag="JN078_004356"
                     /pseudo
     CDS             1..370
                     /locus_tag="JN078_004356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611483.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IS3 family transposase"
BASE COUNT          121 a           92 c           90 g           67 t
ORIGIN      
        1 tcagggcaaa acaccaaaag cctctccgat aacaccagaa caaatcgaaa tacgtaagct
       61 gaggaaaaag ctacaacgca ttgaaatgga gaatgaaata ttaaaaaagg ctaccgcgct
      121 cttgatgtca gactccctga acagttctcg ataatcggga aactcagagc gcattatcct
      181 gtggtcacac tctgccaagt gttcggggtt catcgcagca gctacagata ctggaaaaac
      241 cgtcctgaaa aaccagacgg cagacgggct gtattacgca gtcaggtact tgagctacat
      301 ggcatcagcc atggttcggc cggagcaaga agcatcgcca caatggcaac ccggagaggc
      361 taccagatgg
//
LOCUS       DADMJB010000403          369 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.409, whole genome shotgun sequence.
ACCESSION   DADMJB010000403 DADMJB010000000
VERSION     DADMJB010000403.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.409"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>369
                     /locus_tag="JN078_004357"
     CDS             <1..>369
                     /locus_tag="JN078_004357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000015400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043284.1"
                     /translation="GRDNGIRLSAVWLTHDPEYPENLPAAPLVRYGWTPRGELAAVYD
                     RSNTQVRSFTYDDKYRGRMVAHRHTGRPEIRYRYDSDGRVTEQLNPAGLSYTYQYEKD
                     RITITDSLNRREVLHTQGEAG"
BASE COUNT           82 a          110 c          118 g           59 t
ORIGIN      
        1 tggccgggac aacggcatcc gtctgtctgc cgtgtggctg acgcacgacc cggaataccc
       61 ggagaattta cctgccgcgc cgctggtgcg ctatggctgg acgccgcgcg gcgaactggc
      121 ggcagtgtat gaccgcagca atacacaggt gcgtagcttt acttacgatg ataaataccg
      181 gggccggatg gtggcgcacc gtcacacggg ccggccggaa atccgttacc gttacgacag
      241 cgacgggcgg gtgacagaac agcttaaccc ggcaggctta agctacacgt atcagtatga
      301 gaaggaccgc atcaccatca ccgacagcct gaaccgccgt gaagtgctgc acacgcaggg
      361 tgaagccgg
//
LOCUS       DADMJB010000404          368 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.410, whole genome shotgun sequence.
ACCESSION   DADMJB010000404 DADMJB010000000
VERSION     DADMJB010000404.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 368)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 368)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..368
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.410"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..358)
                     /locus_tag="JN078_004358"
     CDS             complement(<1..358)
                     /locus_tag="JN078_004358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family transcriptional regulator"
                     /protein_id="HAY9043285.1"
                     /translation="MSPTIYDIARVAGVSKSTVSRVLNKQTNISPEAREKVLRAIEEL
                     QYQPNKQARALTSSGFDAIMVISTRSTKTTAGNPFFSEVLHAITAKAEEEGFDVILQT
                     SHNPAEDLQKCESKIKQ"
BASE COUNT           89 a           83 c           90 g          106 t
ORIGIN      
        1 tctgcttaat tttgctttca catttttgta agtcttctgc cggattgtgc gacgtctgca
       61 atatcacgtc gaaaccttcc tcttcagctt tggcggtgat ggcatgcaaa acttcagaga
      121 aaaacggatt acccgccgta gttttggtcg aacgggtaga aatcaccata atggcatcaa
      181 aacccgaaga ggtcagcgcg cgggcctgct tgtttggctg atactgtaat tcttcaatgg
      241 cccgtaacac tttttcgcgc gcttccgggg agatattagt ttgcttattc agcacgcgtg
      301 atacggtgga ttttgatacg cctgcaaccc tggcaatatc ataaatagta ggggacatag
      361 gtcaggaa
//
LOCUS       DADMJB010000405          366 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.411, whole genome shotgun sequence.
ACCESSION   DADMJB010000405 DADMJB010000000
VERSION     DADMJB010000405.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 366)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.411"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            17..>366
                     /gene="leuE"
                     /locus_tag="JN078_004359"
     CDS             17..>366
                     /gene="leuE"
                     /locus_tag="JN078_004359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001396690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine efflux protein LeuE"
                     /protein_id="HAY9043286.1"
                     /translation="MVLVPGPNTLFVLKNSVSSGMKGGYLAACGVFIGDAVLMFLAWA
                     GVATLIKTTPILFNIVRYLGAFYLLYLESKILYATLKGKNNEAKSDEPQYGAIFKRAL
                     ILSLTNPKAILFYVS"
BASE COUNT           87 a           72 c           92 g          115 t
ORIGIN      
        1 ggttggggcc atttttattg tgttggtgcc tgggccaaat accctgtttg tactcaaaaa
       61 tagcgtcagt agcggtatga aaggcggtta tcttgcggcc tgcggtgtat ttattggcga
      121 tgcagtattg atgtttctgg catgggctgg agtggcgaca ttaattaaga ccaccccgat
      181 attattcaac attgtacgtt atcttggtgc gttttatttg ctctatctgg agagtaaaat
      241 tctctacgcg accctgaagg gtaaaaataa cgaggccaaa tccgatgagc cccaatacgg
      301 ggccattttt aaacgcgcgt taattttgag cctgactaat ccgaaagcca ttttgttcta
      361 tgtgtc
//
LOCUS       DADMJB010000406          348 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.412, whole genome shotgun sequence.
ACCESSION   DADMJB010000406 DADMJB010000000
VERSION     DADMJB010000406.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 348)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 348)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..348
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.412"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>348
                     /locus_tag="JN078_004360"
     CDS             <1..>348
                     /locus_tag="JN078_004360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000833619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HAY9043287.1"
                     /translation="WEVVHDEQVKNLYLVNRPIFPAAPLDVDEMVIAARQVERETGKP
                     VRMIILDTLARCFGGNDENDSRDMGAFIRGCDELKRRTGATVLVVHHSGKDETKGARG
                     SSAFRASLDAEYRI"
BASE COUNT           74 a           75 c          113 g           86 t
ORIGIN      
        1 tgggaggttg tgcacgatga gcaggtgaaa aatctgtatc tggtaaaccg ccccatcttt
       61 ccggctgccc cgcttgatgt tgatgaaatg gttatcgctg cccgtcaggt ggagcgggaa
      121 acgggtaaac ctgtacgcat gattattctg gatacgctgg cgcgttgctt tggtgggaat
      181 gatgaaaatg attcccgtga tatgggggcg tttatccgtg gttgtgacga actgaaacga
      241 cgcacagggg ccacggtgct ggtggttcac cattccggca aggatgagac gaaaggcgcg
      301 cgcggttcca gtgcatttcg tgcttcgctg gatgctgaat accggata
//
LOCUS       DADMJB010000407          348 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.413, whole genome shotgun sequence.
ACCESSION   DADMJB010000407 DADMJB010000000
VERSION     DADMJB010000407.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 348)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 348)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..348
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.413"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>348
                     /locus_tag="JN078_004361"
     CDS             <1..>348
                     /locus_tag="JN078_004361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY9043288.1"
                     /translation="RFETEPGRQMQVDWGTMRNGRSPLHVFVAVPGYSRMLYIEFTDN
                     MRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMG
                     FSPRLCRPFRAQT"
BASE COUNT           71 a           92 c           95 g           90 t
ORIGIN      
        1 ttcggttcga aactgaaccc ggacgacaga tgcaggttga ctggggcact atgcgtaatg
       61 gtcgctcacc gcttcacgtg ttcgttgctg ttcccggata cagccgaatg ttgtacatcg
      121 aattcactga caatatgcgt tatgacacgc tggagacctg ccatcgtaat gcgttccgct
      181 tctttggtgg tgtgccgcgc gaagtgttgt atgacaatat gaaaactgtg gttctgcaac
      241 gtgacgcata tcagaccggt cagcaccggt tccatccttc gctgtggcag ttcggcaagg
      301 agatgggctt ctctccccga ctgtgtcgcc ccttcagggc acagacta
//
LOCUS       DADMJB010000408          344 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.414, whole genome shotgun sequence.
ACCESSION   DADMJB010000408 DADMJB010000000
VERSION     DADMJB010000408.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 344)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.414"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>344
                     /locus_tag="JN078_004362"
     CDS             <1..>344
                     /locus_tag="JN078_004362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HAY9043289.1"
                     /translation="RTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKF
                     RATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIV
                     GYAMGERMTKELT"
BASE COUNT           91 a           91 c           98 g           64 t
ORIGIN      
        1 cgcactcgcg aaacatatgg aacccggcgg ctccagacgg agctggcaga gaatggcatc
       61 atcgttggtc gtgaccgact ggcacgtctt cgtaaggagc taaggctacg ctgtaagcag
      121 aaacgcaagt tcagagcgac tacgaacccg aaccacaatc tgccagttgc gccaaatctg
      181 ctgaaccaga cgttcgctcc tacagcacca aatcaggtct gggtggcgga cctgacgtat
      241 gttgccacac aggagggatg gttgtacctc gctggcatca aagatgttta tacgtgcgaa
      301 attgtcggct acgccatggg agagcgcatg acaaaagagc tgac
//
LOCUS       DADMJB010000409          342 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.415, whole genome shotgun sequence.
ACCESSION   DADMJB010000409 DADMJB010000000
VERSION     DADMJB010000409.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.415"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>342
                     /locus_tag="JN078_004363"
     CDS             <1..>342
                     /locus_tag="JN078_004363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HAY9043290.1"
                     /translation="RVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRL
                     GKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHP
                     LYPVLTSMPGV"
BASE COUNT           72 a          110 c           92 g           68 t
ORIGIN      
        1 agcgcgttct cggtccgaga cttgagcacc cggcggtact cgatcttctc cagcgatatc
       61 cctcaccaga aaaactcgct tcgctgggtg agaagaagct ggcagcccag ctctgcaaac
      121 ttgcgcctcg tctgggtaaa cgccttgcag cagacatagc tcaggcactg gccgaacaaa
      181 ccgtcgtcgt tcccggcacg aatgccgctg ccgtagtact gccacgtctg gcactccagc
      241 tcatcacgct gcgtaagcaa agagacgagg tggcgcttga ggtagaacag cgagttcttg
      301 ctcaccctct ttacccggtc ctgaccagta tgcccggagt cg
//
LOCUS       DADMJB010000410          339 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.416, whole genome shotgun sequence.
ACCESSION   DADMJB010000410 DADMJB010000000
VERSION     DADMJB010000410.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 339)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 339)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..339
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.416"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            88..>339
                     /locus_tag="JN078_004364"
     CDS             88..>339
                     /locus_tag="JN078_004364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043291.1"
                     /translation="MPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYY
                     FDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWLNK"
BASE COUNT          113 a           84 c           70 g           72 t
ORIGIN      
        1 ggctgcaatc aatgattatg gcggcagttc cgggacagaa actcgtccac tgcaataaca
       61 aatataaaaa acacaggtca tcagggaatg ccacaacgac accaccaggg acataaacgc
      121 acaccgaaac agttggcgct catcatcaaa cgctgtttgc cgatggtgct cactggcagc
      181 ggcatgcttt gcactaccgc taacgccgaa gagtattatt tcgaccccat tatgctggaa
      241 actacaaaaa gtggtatgca aacaactgat ctgtcacgtt tttcaaaaaa atacgcacaa
      301 ctaccaggaa cttatcaggt tgatatctgg ctgaataaa
//
LOCUS       DADMJB010000411          332 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.417, whole genome shotgun sequence.
ACCESSION   DADMJB010000411 DADMJB010000000
VERSION     DADMJB010000411.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 332)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 332)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..332
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.417"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            179..>332
                     /locus_tag="JN078_004365"
     CDS             179..>332
                     /locus_tag="JN078_004365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000820618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HAY9043292.1"
                     /translation="MKRHNQRLKIISEYFGGVPVKNIGIREVYSFLEIRAAGSKFAIA
                     NQYRALL"
BASE COUNT          125 a           48 c           74 g           85 t
ORIGIN      
        1 aatcggaaga gacaaaagaa ttgcagttaa tgaggctatt gcggcaaata tggaattatt
       61 atccacgcaa catataagct tactggatag aataaaaggt aatagcgtaa cattattctg
      121 cgagctgata ttaaatttca gaaatgaaat agagcgtaga caattaagca caaacaccat
      181 gaaaagacac aaccagaggt tgaaaatcat aagtgaatac tttggtggtg ttccggttaa
      241 aaatataggc ataagggagg tgtacagctt tcttgaaatc agagcagctg ggagtaaatt
      301 tgctattgct aaccagtaca gggcgctttt at
//
LOCUS       DADMJB010000412          331 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.418, whole genome shotgun sequence.
ACCESSION   DADMJB010000412 DADMJB010000000
VERSION     DADMJB010000412.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 331)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 331)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.418"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..>331)
                     /locus_tag="JN078_004366"
     CDS             complement(<1..>331)
                     /locus_tag="JN078_004366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043293.1"
                     /translation="LLFLYINKDNIKVIYSLKINQTTPGILVSCDSNNNFACQTTMTE
                     DVIQRITTFFHTSPDVKNREIKLEWSGDKRDLPTAEAEISRVQASIIKWYASEYHNGR
                     QVLDEIQI"
BASE COUNT           85 a           66 c           60 g          120 t
ORIGIN      
        1 gtatttgtat ctcatcgaga acttgcctgc cattatggta ttctgacgca taccatttga
       61 taatagacgc ctgcacgcga gatatttccg cttcagcagt tggtaaatct ctcttatctc
      121 ctgaccattc cagctttatt tctctgttct tgacatctgg gctggtgtga aaaaatgtag
      181 taattcgctg tataacatct tcagtcattg tggtctgaca ggcaaaatta ttattgctat
      241 cacagctaac aagtatacct ggcgttgtct ggtttatttt taggctgtaa atcactttta
      301 tattgtcttt attgatatac agaaacaaca g
//
LOCUS       DADMJB010000413          330 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.419, whole genome shotgun sequence.
ACCESSION   DADMJB010000413 DADMJB010000000
VERSION     DADMJB010000413.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.419"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(106..294)
                     /locus_tag="JN078_004367"
     CDS             complement(106..294)
                     /locus_tag="JN078_004367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043294.1"
                     /translation="MLTRKSIDPVLLSVGAEKLSQREWDWMKMLKPMDPPPAMVAASI
                     LERRGDTAALTRLQDTGG"
BASE COUNT           80 a           84 c          102 g           64 t
ORIGIN      
        1 gatatcgcgc agaccgcccg catccaggaa ggatgtccag cactggttgg ccgtgaacag
       61 acgtttcagc gggcggggag taaaagcgga caacatgagg acggattaac ccccggtatc
      121 ctgtagccgg gtaagggctg ctgtgtcgcc acggcgctcc aggatggagg ccgcgaccat
      181 cgcaggtggt gggtccatgg gtttgagcat cttcatccag tcccattcac gttgtgagag
      241 cttctcagca ccaacagaga gcagaacggg atctatactt ttgcgggtca acataagagg
      301 atgagtcctt aataaaacag gtcctcagag
//
LOCUS       DADMJB010000414          326 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.420, whole genome shotgun sequence.
ACCESSION   DADMJB010000414 DADMJB010000000
VERSION     DADMJB010000414.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.420"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>326
                     /locus_tag="JN078_004368"
     CDS             <1..>326
                     /locus_tag="JN078_004368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HAY9043295.1"
                     /translation="EYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACML
                     GGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMD
                     PKRMIEA"
BASE COUNT           74 a           85 c           97 g           70 t
ORIGIN      
        1 gaatatccgc aatccgcagc catcgacctg cgttgcgtaa atatggttgc cgatctgtgg
       61 catgcgcctg cgccgaaaaa tggtcaggcc gttggcacca acaccattgg ttcttccgag
      121 gcctgtatgc tcggcgggat ggcgatgaaa tggcgttggc gcaagcgtat ggaagctgca
      181 ggcaaaccaa cggataaacc aaacctggtg tgcggtccgg tacaaatctg ctggcataaa
      241 ttcgcccgct actgggatgt ggagctgcgt gagatcccta tgcgccccgg tcagttgttt
      301 atggacccga aacgcatgat tgaagc
//
LOCUS       DADMJB010000415          314 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.421, whole genome shotgun sequence.
ACCESSION   DADMJB010000415 DADMJB010000000
VERSION     DADMJB010000415.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 314)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 314)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.421"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>314
                     /locus_tag="JN078_004369"
     CDS             <1..>314
                     /locus_tag="JN078_004369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706235.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043296.1"
                     /translation="PALVGNDIGCGMALWQTDILARKYNADKFEKRLSDLDDVAEESW
                     LEENLPSAFAQHPWCSSLGSIGGGNHFAELQQVDQIINAELFALAGLDAQHLQLLVHS
                     GS"
BASE COUNT           80 a           75 c           83 g           76 t
ORIGIN      
        1 atccggcact ggtcggcaat gatatcggct gcggtatggc gctatggcaa acagatattc
       61 tcgctcgcaa atacaacgcc gataagtttg aaaagcgatt atcagatctg gatgacgttg
      121 ctgaagaaag ctggctggag gaaaacctgc cgtcagcatt tgcacagcat ccgtggtgca
      181 gctcgcttgg ctctatcggt ggcggcaatc atttcgctga actgcaacaa gttgatcaaa
      241 tcatcaacgc tgaactgttt gcactagcag gtctggatgc acaacatctg caactgttgg
      301 ttcatagcgg ctcg
//
LOCUS       DADMJB010000416          313 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.422, whole genome shotgun sequence.
ACCESSION   DADMJB010000416 DADMJB010000000
VERSION     DADMJB010000416.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..313
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.422"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>313
                     /locus_tag="JN078_004370"
     CDS             <1..>313
                     /locus_tag="JN078_004370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HAY9043297.1"
                     /translation="KQTMQLSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHL
                     KGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPR
                     VV"
BASE COUNT           91 a           56 c           98 g           68 t
ORIGIN      
        1 aaacagacga tgcaactgag caggctgacg ctgagaagta aaaagccgga gcttgtggag
       61 caagagctgt ggggtgtctt actggcttat aatctggtga gatatcagat gattaaaatg
      121 gcggaacatc tgaaaggtta ctggccgaat caactgagtt tctcagaatc atgcggaatg
      181 gtgatgagaa tgctgatgac attgcagggc gcttcaccgg gacgtatacc ggagctgatg
      241 cgcgatcttg caagtatggg acaacttgtg aaattaccga cgagaagggg aagggccttc
      301 ccgagagtgg taa
//
LOCUS       DADMJB010000417          309 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.denovo.423, whole genome shotgun sequence.
ACCESSION   DADMJB010000417 DADMJB010000000
VERSION     DADMJB010000417.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..309
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.denovo.423"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..>309
                     /locus_tag="JN078_004371"
     CDS             <1..>309
                     /locus_tag="JN078_004371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HAY9043298.1"
                     /translation="SFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQL
                     LWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYS
                     A"
BASE COUNT           78 a           73 c           98 g           60 t
ORIGIN      
        1 gtcgttctcg ccggacagca ggctcaccat gaaagcgctg gaaatggcat gggaaacccg
       61 tggtaagccc ggcggggtga tgttccacag cgatcagggc agtcattata cgagcaggca
      121 gttccggcag ttattgtggc gataccagat cagacagagt atgagccggc gcggaaactg
      181 ctgggataac agcccaatgg aacgcttctt caggagtctg aagaacgaat ggatgccggt
      241 ggtgggttac gtaagcttca gcgaggcagc tcacgccata acggactata tcgttggata
      301 ttacagcgc
//
LOCUS       DADMJB010000418        11188 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.guided.139, whole genome shotgun sequence.
ACCESSION   DADMJB010000418 DADMJB010000000
VERSION     DADMJB010000418.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11188)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11188)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11188
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.guided.139"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(37..603)
                     /locus_tag="JN078_004372"
                     /pseudo
     CDS             complement(37..603)
                     /locus_tag="JN078_004372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418580.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
     gene            complement(822..1799)
                     /gene="epmA"
                     /locus_tag="JN078_004373"
     CDS             complement(822..1799)
                     /gene="epmA"
                     /locus_tag="JN078_004373"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000004771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P--(R)-beta-lysine ligase"
                     /protein_id="HAY9043299.1"
                     /translation="MSETASWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMS
                     QATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNE
                     EMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYLEID
                     PLSADKTQLREVAAKLNLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPAS
                     QASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQ
                     HPIDQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDRA"
     gene            2124..3932
                     /gene="frdA"
                     /locus_tag="JN078_004374"
     CDS             2124..3932
                     /gene="frdA"
                     /locus_tag="JN078_004374"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase (quinol) flavoprotein
                     subunit"
                     /protein_id="HAY9043300.1"
                     /translation="MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS
                     HTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGC
                     PWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLD
                     ILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAL
                     SHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLG
                     EPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICE
                     LAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRL
                     GSNSLAELVVFGRMAGEQATERAATAGNGNEEAIEAQAAGVEQRLKDLVNQDGGENWA
                     KIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIE
                     LGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEY
                     SDVKITTLPPAKRVYGGEADAADKAEAANKKEKANG"
     gene            3925..4659
                     /locus_tag="JN078_004375"
     CDS             3925..4659
                     /locus_tag="JN078_004375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HAY9043301.1"
                     /translation="MAEMKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYI
                     KDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERD
                     LVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACP
                     QFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKH
                     VDPAAAIQQGKVESSKDFLIATLKPR"
     gene            4670..5065
                     /gene="frdC"
                     /locus_tag="JN078_004376"
     CDS             4670..5065
                     /gene="frdC"
                     /locus_tag="JN078_004376"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdC"
                     /protein_id="HAY9043302.1"
                     /translation="MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELI
                     FGLFALKNGPDAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDE
                     KMGPEPIIKSLWAVTVVATIVILFVALYW"
     gene            5076..5435
                     /gene="frdD"
                     /locus_tag="JN078_004377"
     CDS             5076..5435
                     /gene="frdD"
                     /locus_tag="JN078_004377"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdD"
                     /protein_id="HAY9043303.1"
                     /translation="MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGL
                     FPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFY
                     GLAAILTVVTLIGIVTI"
     gene            5498..6631
                     /gene="blaEC"
                     /locus_tag="JN078_004378"
     CDS             5498..6631
                     /gene="blaEC"
                     /locus_tag="JN078_004378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BlaEC family class C beta-lactamase"
                     /protein_id="HAY9043304.1"
                     /translation="MFKTTLCALLITASCSTFAAPQQINDIVHRTITPLIEQQKIPGM
                     AVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLS
                     DPATKYWPELTAKQWNGITLLHLATYTAGGLPLQMPDEVKSSSDLLRFYQNWQPAWAP
                     GTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWG
                     YREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLTPLDINEKTLQQGIQLAQSRYW
                     QTGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAIKPPTPAVRASWVHKTGA
                     TGGFGSYVAFIPEKELGIVMLANKNYPNPARVAAACQILNALQ"
     gene            6720..7253
                     /locus_tag="JN078_004379"
     CDS             6720..7253
                     /locus_tag="JN078_004379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HAY9043305.1"
                     /translation="MRLLPLVAAATAAFLVVACSSPTPPRGVTVVNNFDAKRYLGTWY
                     EIARFDHRFERGLEKVTATYSLRDGGGLNVINKGYNPDREMWQQSEGKAYFTGAPTRA
                     ALKVSFFGLFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVAT
                     REGFDVSKFIWVQQPGS"
     gene            complement(7250..7567)
                     /locus_tag="JN078_004380"
     CDS             complement(7250..7567)
                     /locus_tag="JN078_004380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418572.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound-resistance protein
                     SugE"
                     /protein_id="HAY9043306.1"
                     /translation="MSWIILVIAGLLEVVWAVGLKYTHGFSRLTPSVITVTAMIVSMA
                     LLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESANPMRLASLALIVLGIIGLKL
                     STH"
     gene            complement(7749..7895)
                     /gene="ecnB"
                     /locus_tag="JN078_004381"
     CDS             complement(7749..7895)
                     /gene="ecnB"
                     /locus_tag="JN078_004381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein toxin entericidin B"
                     /protein_id="HAY9043307.1"
                     /translation="MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAAT
                     KAQQ"
     gene            complement(8006..8131)
                     /gene="ecnA"
                     /locus_tag="JN078_004382"
     CDS             complement(8006..8131)
                     /gene="ecnA"
                     /locus_tag="JN078_004382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein antitoxin entericidin A"
                     /protein_id="HAY9043308.1"
                     /translation="MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS"
     gene            complement(8183..8749)
                     /gene="efp"
                     /locus_tag="JN078_004383"
     CDS             complement(8183..8749)
                     /gene="efp"
                     /locus_tag="JN078_004383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HAY9043309.1"
                     /translation="MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLR
                     RLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGD
                     NAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGA
                     VVKVPLFVQIGEVIKVDTRSGEYVSRVK"
     gene            8791..9840
                     /gene="epmB"
                     /locus_tag="JN078_004384"
     CDS             8791..9840
                     /gene="epmB"
                     /locus_tag="JN078_004384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000940527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HAY9043310.1"
                     /translation="MAHIVTLNTPSREDWLTQLADVVTDPDELLRLLNIDADEKLLAG
                     RSAKKLFALRVPRSFIDRMEKGNPDDPLLRQVLTSQDEFVVASGFSTDPLEEQHSVVP
                     GLLHKYHNRALLLVKGGCAVNCRYCFRRHFPYAENQGNKRNWQTALEYVAAHPELDEM
                     IFSGGDPLMAKDHELDWLLTQLEAIPHIKRLRIHSRLPIVIPARITDALVERFSHSTL
                     QILLVNHINHANEIDETFRQAMAKLRRVGVTLLNQSVLLRDVNDNAQTLANLSNALFD
                     AGVMPYYLHVLDKVQGAAHFMVSDDEARQIMRELLTLVSGYLVPKLAREIGGEPSKTP
                     LDLQLRQQLLIKQGS"
     gene            10214..11083
                     /locus_tag="JN078_004385"
     CDS             10214..11083
                     /locus_tag="JN078_004385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY9043311.1"
                     /translation="MAISIKGVNTGVIRKSNNFIALALKIKEPRNKESLFFMSVMELR
                     DLLIALESRLHQKHKLDAAARLQYEQARDKVIKKMAENIPEILVDELKNADINRRVNT
                     LELTDNQGENLTFVLTLHDGSKCELVVNELQIEMLARAIIHAINNAEMRELALRITSL
                     LDFLPLYDVDCQENGNLEYDTYSQPEWKHNLFDHYLAVLYRFKDESGKEQFSGAVVKT
                     REATPGKEVEAITRRMLDFSPRLKKLAGVPCQVYVRTVAANNAQPLTQDQCLRALHHL
                     RVQSTSKTAPQAK"
BASE COUNT         2933 a         2828 c         2788 g         2639 t
ORIGIN      
        1 atcatacact aaatcagtaa gttggcagca ttacccgaaa tgcccaccat ttaataacaa
       61 aatagtaatg cttactaaca gcaatactaa attcagacac attactgcaa taccgcccac
      121 cgcagtaatg cgggcaattt tattaatccc ctttgaagca acgacggtga ccagaatcat
      181 ccatgctact gccagcagac caaccacctg cgtaggctcc agtccggcaa tacgccagtg
      241 ctgggtcatg tcgctaccat agaggaatgt tgagaacggt acccaaactt tcgcggaggt
      301 actcaccatc cagatgatat aagaggaaaa ccacataaac gtaccaatga aggcaaaacg
      361 tggtccgaca ctattattca tccaggaata gataccacct tcttctttgc gataagcagc
      421 tcccatttca gccatcatta aggcgaatgg aataaagaat aacaatgcag aaaatatata
      481 aaagggaatc gcactataac ccattaagta ataagccgat gggctattgg caaatccaaa
      541 tacggaagta aagatcatca atatgagtcc tatcagactc atctttttta tcgtgtgagg
      601 catgaaacca tccttcattt cagcgcgtgt ataacacgtg cccactgaac tgcactgcgc
      661 aacattgagc aggcagcgta aaaaccaata cagaattgat acccggatga tatcaaatat
      721 ccagtcttaa attgtggcct ttaacggaaa aatgaaaaca tatgctacag aatggcgctt
      781 atcacgccat tcttcgctgt taattcagta atttttcaga attatgcccg gtcaacgcta
      841 aaggcgatga cttcagccag tgtctccgcg cccagcgcca acatcaccag acgatcaaca
      901 cctaatgcca cgccggaaca gtcaggcata ccgactttca aggcttcaat cagattctgg
      961 tcaatggggt gctgcggcaa accgcgcgcc gcgcgcttac ggttatcttg ttcaaagcgt
     1021 tgttgctgct cacgggcatc cgttaattca tggaaaccat tcgccagctc aataccttta
     1081 taataaacct caaagcgttc agcgacccga tgatcttcgg tactgatttg cgccagtgat
     1141 gcctggctgg ctggaaagtg gtacacaaag gtcggttttt ctttgccaat atttggctct
     1201 acgccaaagg taaacagcaa ttgtagcaac gtgtcgcggt cttcttcggt atcagcaacg
     1261 ttactcaaat tcagtttcgc tgcgacttcc cgcagttgcg ttttgtcggc agagagcggg
     1321 tcaatttcca gataacgcaa gaaagcttgt tgataagaaa ggctttctgc tgccgggcag
     1381 tccagcacct gttgtaagag atcgtccacc tcgttcatca accggtacat atcatagtgc
     1441 ggtcgatacc actcaagcat agtgaactca gggttgtgat aacgccccat ctcttcatta
     1501 cggaagctgc ggcacagctg gaataccggc ccacaaccgg caaccagcag gcgtttcata
     1561 tggtattccg ggctggtcat taaccagaga ttcatcccct gcgaatgccc ggggccaacg
     1621 aaacgtgtct caaacgggac caaatgaata tcggttaccg tcgcctggct catacaaggc
     1681 gtctccacct ccagcactcc acgatcagca aagaaacgac ggatctccgc cataatcgcc
     1741 gcgcgtttta ataagttagg aatggatgcg ctcggctgcc aggatgccgt ttcgctcata
     1801 gttaaatctc cagtttttga caagggcacg aagtctactc gcaacgcgac ggcgagacaa
     1861 attttacgca ggaatcaaac agcggtgggc agtgactaaa aaaagcacga tctgatggtt
     1921 tagtaattaa attaatcatc ttcagtgata atttagccct cttgcgcact aaaaaaatcg
     1981 atctcgtcaa atttcagact tatccatcag actatactgt tgtacctata aaggagcagt
     2041 ggaatagcgt tcgcagaccg taactttcag gcacttaccc tgaagtacgg ggctgtggga
     2101 taaaaacaat ctggaggaat gtcgtgcaaa cctttcaagc cgatcttgcc attgtaggcg
     2161 ccggtggcgc gggattacgt gctgcaattg ctgccgcgca ggcaaatcca aatgcaaaaa
     2221 tcgcactaat ctcaaaagta tacccgatgc gtagccatac cgttgctgca gaagggggct
     2281 ccgccgctgt cgcgcaggat catgacagct tcgaatatca ctttcacgat acagtagcgg
     2341 gtggcgactg gttgtgtgag caggatgtcg tggattattt cgtccaccac tgcccaaccg
     2401 aaatgaccca actggaactg tgggggtgcc catggagccg tcgcccggat ggtagcgtca
     2461 acgtacgtcg cttcggcggc atgaaaatcg agcgcacctg gttcgccgcc gataagaccg
     2521 gcttccatat gctgcacacg ctgttccaga cctctctgca attcccgcag atccagcgtt
     2581 ttgacgaaca tttcgtgctg gatattctgg ttgatgatgg tcatgttcgc ggcctggtag
     2641 caatgaacat gatggaaggc acgctggtgc agatccgtgc taacgcggtc gttatggcta
     2701 ctggcggtgc gggtcgcgtt tatcgttaca acaccaacgg cggcatcgtt accggtgacg
     2761 gtatgggtat ggcgctaagc cacggcgttc cgctgcgtga catggaattc gttcagtatc
     2821 acccaaccgg tctgccaggt tccggtatcc tgatgaccga aggctgccgt ggtgaaggcg
     2881 gtattctggt caacaaaaat ggctaccgtt atctgcaaga ttacggcatg ggcccggaaa
     2941 ctccgctggg cgagccgaaa aacaaatata tggaactggg tccacgcgac aaagtttctc
     3001 aggccttctg gcacgaatgg cgtaaaggca acaccatctc cacgccgcgt ggcgatgtgg
     3061 tttatctcga cttgcgtcac ctcggcgaga aaaaactgca tgaacgtctg ccgttcatct
     3121 gcgaactggc gaaagcgtac gttggcgtcg atccggttaa agaaccgatt ccggtacgtc
     3181 cgaccgcaca ctacaccatg ggcggtatcg aaaccgatca gaactgtgaa acccgcatta
     3241 aaggtctgtt cgccgtgggt gaatgttcct ctgttggtct gcacggtgca aaccgtctgg
     3301 gctccaactc cctggcggaa ctggtggtct tcggccgtat ggccggtgaa caagcgacag
     3361 agcgtgcagc aactgccggt aatggcaacg aagaggcaat tgaagcgcag gcagctggcg
     3421 ttgaacaacg tctgaaagat ctggttaacc aggatggcgg cgaaaactgg gcgaagatcc
     3481 gcgacgaaat gggcctagca atggaagaag gttgcggtat ctaccgtacg ccggaactga
     3541 tgcagaaaac catcgacaag ctggcagagc tgcaggaacg cttcaagcgc gtgcgcatca
     3601 ccgacacctc cagcgtgttc aacaccgacc tgctctacac cattgaactg ggccacggtc
     3661 tgaacgttgc tgaatgtatg gcgcactccg caatggcacg taaagagtcc cgcggcgcac
     3721 accagcgtct ggacgaaggt tgcaccgagc gtgacgacgt caacttcctc aaacacaccc
     3781 tcgccttccg cgatgctgat ggcacgactc gcctggagta cagcgacgtg aagattacta
     3841 cgctgccgcc agctaaacgc gtttacggtg gcgaagcgga tgcagccgat aaggcggaag
     3901 cagccaataa gaaggagaag gcgaatggct gagatgaaaa acctgaaaat tgaggtggtg
     3961 cgctataacc cggaagtcga taccgcaccg catagcgcat tctatgaagt gccttatgac
     4021 gcaactacct cattactgga tgcgctgggc tacatcaaag acaacctggc accggacctg
     4081 agttaccgct ggtcctgccg tatggcgatt tgtggttcct gcggcatgat ggttaacaac
     4141 gtgccaaaac tggcatgtaa aaccttcctg cgtgattaca ccgacggtat gaaggttgaa
     4201 gcgttagcta acttcccgat tgaacgcgat ctggtggtcg atatgaccca cttcatcgaa
     4261 agtctggaag cgatcaaacc gtacatcatc ggcaactccc gcaccgcgga tcagggtact
     4321 aacatccaga ccccggcgca gatggcaaag tatcaccagt tctccggttg catcaactgt
     4381 ggtctgtgct acgccgcgtg cccgcagttt ggcctgaacc cagagttcat cggtccggct
     4441 gccattacgc tggcgcatcg ttataacgaa gatagccgcg accacggtaa gaaggagcgt
     4501 atggcgcagt tgaacagcca gaacggcgta tggagctgta ctttcgtggg ctattgctcc
     4561 gaagtctgcc cgaaacacgt cgatccggct gcggccattc agcagggcaa agtagaaagt
     4621 tcgaaagact ttcttatcgc gaccctgaaa ccacgctaag gagtgcaaca tgacgactaa
     4681 acgtaaaccg tatgtacggc caatgacgtc cacctggtgg aaaaaattgc cgttttatcg
     4741 cttttacatg ctgcgcgaag gcacggcggt tccggctgtg tggttcagca ttgaactgat
     4801 tttcgggctg tttgccctga aaaatggccc ggacgcctgg gcgggattcg tcgacttttt
     4861 acaaaacccg gttatcgtga tcattaacct gatcactctg gcggcagctc tgctgcacac
     4921 caaaacctgg tttgaactgg caccgaaagc ggccaatatc attgtaaaag acgaaaaaat
     4981 gggaccagag ccaattatca aaagtctctg ggcggtaact gtggttgcca ccatcgtaat
     5041 cctgtttgtt gccctgtact ggtaaggagc ctgagatgat taatccaaat ccaaagcgtt
     5101 ctgacgaacc ggtattctgg ggcctcttcg gggccggtgg tatgtggagc gcaattattg
     5161 cgccggtgat gatcctgctg gtgggtattc tgctgccact ggggctgttt ccgggtgatg
     5221 cgctgagcta cgagcgcgtt ctggcgttcg cgcagagctt cattggtcgc gtattcctgt
     5281 tcctgatgat cgttctgccg ctgtggtgtg gtttacaccg tatgcaccac gcgatgcacg
     5341 atctgaaaat tcacgtgcct gcgggcaaat gggttttcta cggtctggct gctatcctga
     5401 cagttgtcac gctgattggt atcgttacaa tctaacgtat cgccaatgta aatccggccc
     5461 gcctatggcg ggccgttttg tatggaaacc agaccttatg ttcaaaacga cgctctgcgc
     5521 cttattaatt accgcctctt gctccacatt tgctgcccct caacaaatca acgatattgt
     5581 gcatcgcaca attaccccgc ttatagagca acaaaagatc cccggtatgg cggtggcggt
     5641 aatttatcag ggtaaacctt attactttac ctggggctat gcggacatcg ccaaaaagca
     5701 gcccgtcaca cagcaaacgt tgtttgagtt aggttcggtc agcaaaacat ttacgggcgt
     5761 gcttggtggc gatgctattg ctcgagggga aatcaagtta agcgatcccg caacaaaata
     5821 ctggcctgaa cttaccgcta aacagtggaa tgggatcaca ctattacatc ttgcgaccta
     5881 caccgctggc ggcctgccat tgcagatgcc ggatgaagtg aaatcctcaa gcgacttgct
     5941 gcgcttctat caaaactggc agcctgcatg ggctccagga acacaacgtc tgtatgccaa
     6001 ctccagtatc ggtttgttcg gcgcactggc tgtgaagccg tctggtttga gttttgagca
     6061 ggcgatgcaa actcgtgtct tccagccact caaactcaac catacgtgga ttaatgtacc
     6121 gcccgcagaa gaaaagaatt acgcctgggg atatcgcgaa ggcaaggcag ttcatgtttc
     6181 gccaggggcg ttagatgctg aagcttatgg tgtgaagtcg accattgaag atatggcccg
     6241 ctgggtgcaa agcaatttaa ccccccttga tatcaatgag aaaacgcttc aacaagggat
     6301 acaactggca caatctcgct actggcaaac cggcgatatg tatcagggcc tgggctggga
     6361 aatgctggac tggccggtca atcctgacag catcattaac ggcagtgaca ataaaattgc
     6421 actggcagca cgcccggtaa aagcgattaa gcccccaact cctgcagtac gcgcatcatg
     6481 ggtacataaa acgggggcga ccggcggatt tggtagctat gtcgcgttta ttccagaaaa
     6541 agagctgggt atcgtgatgc tggctaacaa aaactatccc aatccagcga gagtcgccgc
     6601 cgcctgtcag attctcaacg ctctacagta aaatttcatc gggtccgaat tttcggacct
     6661 tttctgcgct tttccttgct gtcatctaca cttagaaaaa aaccagtaag gaaacattta
     6721 tgcgcctgct ccctctcgtt gccgcagcga cagctgcatt tctggtcgtt gcctgcagtt
     6781 ctcctacgcc gccgcgtggc gtgacagtag tgaataattt cgacgctaaa cgctatctcg
     6841 gtacctggta tgagattgcc cgttttgatc accgttttga acgtggactg gaaaaagtca
     6901 ccgcaacata cagtctgcgt gatggcggcg gcctgaatgt catcaataaa ggctataacc
     6961 ctgacagaga aatgtggcag cagagtgaag ggaaagcgta ctttaccggc gcaccaacac
     7021 gcgctgcgct gaaagtgtca ttctttggtc ttttctatgg cggttataac gtcattgcac
     7081 ttgatcggga ataccgccat gcgctggttt gcggcccgga ccgcgactac ctgtggatac
     7141 tctcccgcac gccaaccatt tctgacgaag tgaaacagga gatgctggca gtcgcgaccc
     7201 gggaagggtt tgatgtcagt aagtttattt gggtacagca gcccggtagt tagtgagtgc
     7261 tgagtttcag accaataatc cccaatacga ttaacgccag actcgccagg cgcatcgggt
     7321 tagcggactc accgagcagc acaatgccgg tgatagccgc gccgactgcg ccaatacccg
     7381 tccacacggc ataagccgtc cctactggta acgatttcat cgcccaggca agtagcgcca
     7441 tactgacaat catcgccgtc acggtaataa cactcggcgt caaacgacta aagccgtggg
     7501 tatatttcag gccaacggcc cataccactt ccagcagacc agcaataact aagataatcc
     7561 aggacatatc aggctccgga gaattggggc cgtccccggt gaaaagacgc gtttgcaggt
     7621 cgtcctgcaa agctgatggt tgaacggata ttttgccagg tggcagggga atttcaacta
     7681 ttaccttagt gactatcgca gaaaaaacaa acggcacgac acagctgtcg taccgttatt
     7741 gcttattgct attgctgcgc tttcgttgct gcgccagaaa tcgcgttacc gccatcagaa
     7801 atgtcttcac caacgccacg cgtggtgttg caggcagtta atactgttga aagcaccaga
     7861 acagaaaaga tcgctgcaat tgtcttcttc accataacgt cttcctttta ggtaatgtta
     7921 tttatgtttg cctatagcaa attaataata gacaacatcg ccaaaaatga cggaaatctg
     7981 atgatttttc ggaagagaag aaaaattagc tggcagcgcg agagatggag ttgccgagat
     8041 gtttgatgtc ttcgccgaaa ccgcgagcgg tgttacagcc cgtgagcagc gtactggcaa
     8101 gcaaaacaag aacgataagg cgtttcatca tctctgacct gaataagtga tggtgcagcc
     8161 tgcaggccgc accacaaccg cattacttca cgcgagagac gtattcacca gagcgggtat
     8221 ccactttgat gacttcgccg atttgtacga acagcggaac cttaaccaca gcgccagtag
     8281 acagggtagc cggtttgccg ccagtacctg cggtatcacc tttcaggccc ggatcggtat
     8341 caacgatttc cagttcaacg aagttcggcg gagtaacgga gatcggctga ccattccaca
     8401 gagttacgat acactctgcc tgatccagca gccatttagc gttatcgcca attgcttttg
     8461 catcagcaga cagctgctcg aaagtttcgt tgttcatgaa gtgccagaac tcaccgtcgt
     8521 tgtacaggta agtcaggttc atatcgacaa catcagcgcc ttcagcggaa tcagtagatt
     8581 tgaaggtttt ttctacgcga gtaccggtca gcagacgacg cagtttaacg cgagcaaatg
     8641 cctggccttt acccggtttt acgaattcac tcgcttcaac cgcgtaaggt tcgccgtcta
     8701 acatgatttt aagaccagca cgaaaatcgt tgctatagta cgttgccata aggccctctg
     8761 aaatttgtta attggtagct aagccacaaa atggcgcata ttgtaaccct aaatacccca
     8821 tccagagaag attggttaac gcaacttgcc gatgttgtga ccgatcctga tgaacttctg
     8881 cgtcttttga atatagacgc ggacgaaaaa ctgttggccg gacgcagcgc caaaaagctg
     8941 tttgccctgc gtgtgccccg ctcatttatc gatcgcatgg agaaaggcaa tccggacgat
     9001 cctcttttgc gtcaggtact tacctcgcaa gatgagtttg tcgtcgcgtc cggattctcc
     9061 accgacccac tggaagaaca gcacagcgta gtgcctggtt tgttgcataa ataccacaac
     9121 cgggcgcttt tgctggtcaa aggcggctgc gcggtaaatt gccgctattg cttccgtcgc
     9181 cacttcccct atgccgaaaa tcagggcaac aagcgtaact ggcagactgc acttgagtat
     9241 gttgctgcgc atccggaact ggacgagatg attttctccg gcggcgatcc gctgatggcg
     9301 aaagatcacg agctggactg gttgctcaca caactggaag ccatcccgca tatcaaacgt
     9361 ctgcggattc acagtcgtct gccgattgtg atcccggcac gcatcacaga tgcgctggtt
     9421 gaacgctttt cacattctac gctgcaaatc ctgctggtga atcacatcaa ccatgccaat
     9481 gagatagatg aaacattccg tcaggcgatg gctaagttgc gccgggtagg cgttactttg
     9541 ctgaaccaga gcgttctgtt acgtgatgtg aacgataacg cacaaacgct ggcaaacctg
     9601 agtaatgcgt tgttcgatgc cggcgtgatg ccgtattacc tgcatgtgct cgataaagta
     9661 cagggcgcag cgcattttat ggtgagtgat gacgaagcac ggcagattat gcgtgagttg
     9721 ctgacattgg tgtcgggata tctggtgccg aaactggcgc gagaaattgg cggcgaaccc
     9781 agcaaaacgc cgctggatct ccagctacgc cagcagttac tgattaaaca gggaagttaa
     9841 acattaaaat tgcctgatgc gctacgctta tcaggcctac atcgtgcatt gaaattgaat
     9901 ggatttgcaa tgaactgtag gccggataag gcgtttacgc cgcatccggc aagagcaaca
     9961 aacgcaagta cagcaacctg tcattaaact gagaaattta atctttgccc gttgcataac
    10021 ctttaattat tcatatgcat tgctgttgtt actttttata tagctaacac caataattaa
    10081 cctttctttt ctgtttatat agagtgagca cggctattta tgttatttta acaactgtta
    10141 ctaccaagcc catttatctg gcttataaat taaaattaat tatttaattg agaaatggtt
    10201 agggagaacc tacatggcca taagcatcaa gggtgttaat accggtgtta ttcgcaagag
    10261 taataatttc attgcactgg cgctgaaaat taaagaacct cgcaataaag aatcgttgtt
    10321 ctttatgtct gtcatggaac tgcgcgacct gctgattgcg ctggaaagtc gtctgcatca
    10381 aaagcataaa ctggatgctg ctgcacgcct tcagtatgag caagctcgcg ataaagtcat
    10441 taagaaaatg gcagaaaaca tcccagaaat tctggttgat gagcttaaaa atgccgatat
    10501 taatcgtcgg gttaacacgc tggaacttac cgataatcaa ggcgaaaatc ttaccttcgt
    10561 attaacgcta catgacggta gcaaatgtga gttagtcgtc aatgagttgc agattgaaat
    10621 gctagcgcga gcaatcattc atgcaattaa taatgcggaa atgcgtgaac tggcattacg
    10681 tattacctca ctgttagatt tcctgccgtt atatgacgtt gactgccagg aaaatggcaa
    10741 tctggaatat gacacctatt cccaaccgga atggaaacat aacttgttcg accattatct
    10801 ggcggtgctt taccgcttta aagatgaaag tggcaaagaa caatttagcg gcgcagtggt
    10861 gaaaacgcgt gaagcaacgc cgggtaaaga agtagaggcg atcactcgcc gaatgcttga
    10921 tttcagccca cgactgaaaa aactcgcggg tgtgccatgt caggtctatg ttcgcaccgt
    10981 agcggcgaat aacgcccaac cgctaaccca ggatcaatgc ttacgcgcgc tgcatcactt
    11041 acgtgttcaa tccaccagca aaactgcacc acaggcgaaa taatctcatc tttgctaatg
    11101 cgaggctgga gccatccagc ctgaaatgac tgataacgtg atcgttggtc atgccggatg
    11161 cggcgtaaac gccttatccg gcctacaa
//
LOCUS       DADMJB010000419        10871 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.guided.144, whole genome shotgun sequence.
ACCESSION   DADMJB010000419 DADMJB010000000
VERSION     DADMJB010000419.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10871)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10871)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10871
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.guided.144"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            163..650
                     /locus_tag="JN078_004386"
                     /pseudo
     CDS             163..650
                     /locus_tag="JN078_004386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341229.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="rtcB domain protein"
     gene            647..1261
                     /locus_tag="JN078_004387"
     CDS             647..1261
                     /locus_tag="JN078_004387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000602105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor H"
                     /protein_id="HAY9043312.1"
                     /translation="MILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETET
                     GRYSDTLRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRFTADE
                     QEQSDAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLL
                     IAWKLEQQQQENSAVLKSQRRMFHHQIERGNPRRTFTGMAFIEG"
     gene            complement(1318..2775)
                     /gene="pepD"
                     /locus_tag="JN078_004388"
     CDS             complement(1318..2775)
                     /gene="pepD"
                     /locus_tag="JN078_004388"
                     /EC_number="3.4.13.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008783788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosol nonspecific dipeptidase"
                     /protein_id="HAY9043313.1"
                     /translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKG
                     FHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDG
                     EWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWL
                     QADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGG
                     EIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDAL
                     KSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRN
                     SDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA
                     KGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIG
                     PTITGPHSPDEQVHIESVGHYWTLLTELLKEIPAK"
     gene            3036..3494
                     /gene="gpt"
                     /locus_tag="JN078_004389"
     CDS             3036..3494
                     /gene="gpt"
                     /locus_tag="JN078_004389"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HAY9043314.1"
                     /translation="MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGA
                     LLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIRE
                     MYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR"
     gene            3586..4830
                     /gene="frsA"
                     /locus_tag="JN078_004390"
     CDS             3586..4830
                     /gene="frsA"
                     /locus_tag="JN078_004390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase FrsA"
                     /protein_id="HAY9043315.1"
                     /translation="MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTI
                     PHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWA
                     TQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEA
                     AQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYF
                     APRGIVMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGA
                     NVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDEA
                     LRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFN
                     PVYRNFDKGLQEITGWIEKRLC"
     gene            4888..5289
                     /locus_tag="JN078_004391"
     CDS             4888..5289
                     /locus_tag="JN078_004391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-binding protein Crl"
                     /protein_id="HAY9043316.1"
                     /translation="MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNV
                     KPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLRE
                     FHEKLRELLTTLNLKLEPADDFRDEPVKLTA"
     gene            complement(5328..6383)
                     /gene="phoE"
                     /locus_tag="JN078_004392"
     CDS             complement(5328..6383)
                     /gene="phoE"
                     /locus_tag="JN078_004392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoporin PhoE"
                     /protein_id="HAY9043317.1"
                     /translation="MKKSTLALVVMGIVASASVQAAEIYNKDGNKLDVYGKVKAMHYM
                     SDNDSKDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGL
                     KYKDLGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFF
                     GVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQN
                     LQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQF
                     DFGLRPSLGYVLSKGKDIEGIGGEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNK
                     LNINNDDIVAIGMTYQF"
     gene            6671..7774
                     /gene="proB"
                     /locus_tag="JN078_004393"
     CDS             6671..7774
                     /gene="proB"
                     /locus_tag="JN078_004393"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HAY9043318.1"
                     /translation="MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHR
                     IVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQML
                     LTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILA
                     GADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKL
                     QAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAG
                     EITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDA
                     LRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR"
     gene            7786..9039
                     /gene="proA"
                     /locus_tag="JN078_004394"
     CDS             7786..9039
                     /gene="proA"
                     /locus_tag="JN078_004394"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HAY9043319.1"
                     /translation="MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILN
                     ANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSG
                     LRLERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQ
                     DALKSCGLPAGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVI
                     TGGIGVCHIYVDESVEIAEALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQ
                     MAESGVTLHADAAALAQLQAGPAKVVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIR
                     EHGTQHSDAILTCDMRNAQRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLH
                     ARGPMGLEALTTYKWIGIGDYTIRA"
     gene            9154..9229
                     /locus_tag="JN078_004395"
     tRNA            9154..9229
                     /locus_tag="JN078_004395"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9187..9189,aa:Thr,seq:cgt)
     gene            complement(9244..10407)
                     /locus_tag="JN078_004396"
     CDS             complement(9244..10407)
                     /locus_tag="JN078_004396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HAY9043320.1"
                     /translation="MSLFRRGEIWYASFTLPNGKRFKQSLGTKDKRQATELHDKLKAE
                     AWRVSKLGEIPDITFEEACVRWLEEKAHKKSLDDDKSRIGFWLQHFAGMQLRDITESK
                     IYSAMQKMTNRRHEENWKLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLRAA
                     EREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDECPEPLKSVVEFALATGLRRSN
                     IINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKES
                     CTKPDGTKAPTVRKMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVL
                     QEMGGWESIEMVRRYAHLAPNHLTEHARQIDSILNPSVPNLSQSRNKERTNDV"
     gene            complement(10284..10718)
                     /locus_tag="JN078_004397"
     CDS             complement(10284..10718)
                     /locus_tag="JN078_004397"
                     /inference="COORDINATES: protein motif:HMM:NF024139.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAY9043321.1"
                     /translation="MGYDSRLDRLATTSWHSFFNNITARGEIMEPYSLTLDEACHFLK
                     ISRPTAINWIRTGRLQATRKDPTKNKSPYLTTRQACIAALQSPLHTVQVSAGDGITEE
                     RKCHSSAEVKYGTPVSHCRTVKDLNSLLEQRTKGRRQNSMTS"
BASE COUNT         2590 a         2676 c         2805 g         2800 t
ORIGIN      
        1 caccccatta taaggggtac gaataaagta acggggcagt ctattttaca gcggcatatt
       61 gcctcgttct cgcatcatgg tttgcctcaa ggcagtgacg acgcgctacg gtatattgcg
      121 gaacatgacg atgcgctggc gtttgcgtgt attaatcgcc agatgatcgc tttgcgcata
      181 atgcaacaag ttaaggccac gggaagtccg gttctggatg tggcgcataa ctttgttagc
      241 gcgtgtcaaa tcggcgtcaa cagggctggt tgcatcgtaa aggtgccacg ccggatgaca
      301 acggtctggt gattattccc ggttcacgtg gtgattactc ctggattgta cagcctgttg
      361 cgaacgaaaa aacgctccac tcgctggcgc atggggcagg gcgtaaatgg gggcgcaccg
      421 agtgtaaatg gcgtctggca gcgaaataca cggtgacgca actctcgcgg actgaacttg
      481 gcagtcggat aatttgtcgc gataaacaac tcatctttga agaagcgcca caagcctata
      541 aatcggctga aagcgtggtg caatgtctgg tgcaggccgg tttaattatt cctgtcgcgc
      601 ggctgcgtcc ggtgctaacg ctcaaaaaca gtggagggaa aaaaggatga tcttgctaca
      661 actctcctca gcgcaggggc cggaagaatg ttgtctcgca gtgaaaaagg cgctggacag
      721 gctaattaaa gaagctgccc gacaagacgt cgcggtaacg gtgttggaaa cagaaacggg
      781 ccgctactct gacacgctgc gttcagctct ggtttctctg gatggcgata acgcatgggc
      841 attaagcgaa agctggtgtg gcactattca gtggatttgt ccgagtccgt atcggcctca
      901 tcatgggcgc aaaaactggt ttctgggcat tgggcgtttt accgctgatg agcaggagca
      961 atccgatgcg atccggtatg agacgctgcg ttcgtcgggg ccgggcggtc aacatgtcaa
     1021 taaaaccgac tcggcggtac gcgccacgca tttggcatcc ggtattagcg tgaaggttca
     1081 gtcagagcgt agtcagcatg ctaacaagcg gctggcacga ttgctgattg cctggaagct
     1141 ggagcagcag caacaggaaa atagcgcggt gctgaaatcg cagcggcgaa tgttccatca
     1201 ccagattgaa cgtggcaacc cgagacggac atttacaggg atggctttta tcgaaggata
     1261 atgaaggatg aaactgccgg aaggcgatta aacgccatcc ggcagcaaat caaataatta
     1321 cttcgccgga atttctttca gcagttcagt cagcagtgtc cagtaatgac ctacgctttc
     1381 gatgtgaact tgctcatccg gagagtgtgg accggtgata gttggcccga tagaaaccat
     1441 gtccatttcc ggatacggtt ttttgaacag accacattcc aggcccgcgt ggataatctg
     1501 gatgttcggc gtcttgttga acaggcgctg ataggtttca cgtaccagat gcatcaccgg
     1561 agaattagcg tccggctgcc agccaggata tgcgcctttc gcttcggttt tcgcgccagc
     1621 cagtttaccc agcgaatcca gcatgctcac cacgtagtct ttaccgctgt cgatcagtga
     1681 acggatcagg cagtgaattt ctacgttatt gtcagtcatg gtcaccacac cgacgttcag
     1741 ggaggtttca accacacctt tggctacatc ggagttgcgg atcacaccgt tcggggtggc
     1801 gttcagcaga cgaataaagg tatcgcgaga tttcgcaatc agggcagctt tatcgttcgc
     1861 tacagagtcc agcaacaagg ccagattttt ctctttctct gccagctcgt ttttcaggat
     1921 ctcctgatag gtattcacca gagatttcag tgcgtcgact ttatcagctg cgacagcaat
     1981 ggtcgcaaag gcttcacgcg ggatggcgtt acgcagtgtg ccgccgttga aatcgataag
     2041 gcgcaggtcc agttcttctg catgacccgc caggaagcgc accagcagtt tgttggcatt
     2101 acccaggcca acgtggattt caccgccgga gtgaccgcct ttcagacctt ttaaggttaa
     2161 cttgaaggtt tcaaaaccag ctggaaccgc ttcacgatct aaatgcaggt tggaggtgaa
     2221 gtcgataccc cccgcacaac ccatgtagat ttcaccttct tcttcggagt cggtgttaat
     2281 cagaatatca gcctgcaacc agttgctctg taagccaaaa gcaccgtcca taccggcttc
     2341 ttcggtcatg gtcagcagca cttccagcgg accgtgaacc acgttttcgt cagccagaac
     2401 cgccagtgca gaggccatac caatgccgtt atccgcaccc agcgtggtgc cgcgcgcttt
     2461 aacccattcg ccatcaatat aaggctggat aggatctttc gtgaagtcat gcacggtgtc
     2521 gttatttttc tgcggcacca tatcgaggtg ggcctgtaag acgaccggtt tacgattttc
     2581 catacctgcg gtagcaggtt tacgaatcag gatattacct acctgatcgc gttcgacatg
     2641 gaaacctttc tcttttgccc aaccaacaat gtattcagcg agttgctctt catgatagga
     2701 cgggtgcgga atagaacaga ttttggcaaa aatatcccac agcggctgtg gagataattg
     2761 agacagttca gacacgttaa gtctccttgt cgatcacccg caaaacagta ttgcaggtca
     2821 cagggttagc agaaaatgtt gtcaacacaa gacaggcttg cgagatatgt ttgagaatac
     2881 cactttatcc cgcgtcaggg agaggcagtg cgtaaaaaga cgcggactca tgtgaaatac
     2941 tggtttttag tgcgccagat ctctataatc tcgcgcaacc tattttcccc tcgaacactt
     3001 tttaagccgt agataaacag gctgggacac ttcacatgag cgaaaaatac atcgtcacct
     3061 gggacatgtt gcagatccat gcacgtaaac tcgcaagccg actgatgcct tctgaacaat
     3121 ggaaaggcat tattgccgta agccgtggcg gtctggtacc gggtgcgtta ctggcgcgtg
     3181 aactgggtat tcgtcatgtc gataccgttt gtatttccag ctacgatcac gacaaccagc
     3241 gagagcttaa agtgctgaaa cgcgcagaag gcgatggcga aggcttcata gttattgatg
     3301 acctggtgga taccggtggt actgctgttg cgattcgtga aatgtatcca aaagcgcact
     3361 ttgtcaccat cttcgcaaaa ccggctggtc gtccgctggt tgatgactat gttgttgata
     3421 ttccgcaaga tacctggatc gaacagccgt gggatatggg cgtcgtattc gtcccgccaa
     3481 tctccggtcg ctaatctttt caacgcctgg cactgccggg cgttgttctt tttaacttca
     3541 ggcaggttac aatagtttcc agtaagtatt ctggaggctg catccatgac acaggcaaac
     3601 ctgagcgaaa ccctgttcaa accccgcttt aaacatcctg aaacctcgac gctagtccgc
     3661 cgctttaatc acggcgcaca accgcctgtg cagtcggctc ttgatggtaa aaccatccct
     3721 cactggtatc gcatgattaa ccgtctgatg tggatctggc gcggtattga cccacgtgaa
     3781 atcctcgacg tccaggcacg tattgtgatg agcgatgctg aacgtaccga cgatgattta
     3841 tacgatactg tgattggcta ccgtggtggc aactggattt atgagtgggc cacccaggcg
     3901 atggtgtggc aacaaaaagc ctgtgcggaa gaagatccgc aactcagtgg tcgacactgg
     3961 ctgcatgcgg ctacgttgta caacattgcc gcctatcctc atctgaaagg agatgacctg
     4021 gccgagcaag cgcaggcttt atcaaaccgc gcctatgaag aggccgccca gcgtctgccg
     4081 ggcacgatgc ggcagatgga gtttaccgta cccggcggtg cgcccatcac cggctttttg
     4141 catatgccga aaggcgatgg cccgttcccg acagtattaa tgtgtggtgg tctggatgcg
     4201 atgcagacgg actattacag cctgtatgaa cgttattttg cgccgcgcgg cattgtgatg
     4261 ctgactattg atatgccgtc ggtgggcttt tcttcaaaat ggaagctcac ccaggactcc
     4321 agcctgttgc atcagcacgt cttaaaggcg ctgcctaacg taccgtgggt ggatcacact
     4381 cgcgtcgcgg cctttggttt ccgtttcggc gctaacgttg ccgtgcgtct ggcatatctt
     4441 gaatcgccgc gtctgaaagc ggttgcctgt cttggtccgg tagttcatac cctgttgagt
     4501 gattttaagt gccagcaaca ggtgccggaa atgtatcttg acgttctggc gagtcgtttg
     4561 gggatgcatg atgcttccga cgaagcgtta cgcgtggagc tgaatcgcta ttcattaaaa
     4621 gtgcaaggat tgctgggacg tcgctgccca acgccaatgt tatcaggcta ctggaagaac
     4681 gatccgttca gcccggaaga ggactcacgc ttaatcacct catcatctgc tgacggtaaa
     4741 ttattagaga tcccatttaa cccggtgtat cggaattttg acaaaggtct tcaggaaatc
     4801 accggctgga tcgaaaaacg cttgtgttaa aaatttgcta aattttgcca atttggtaaa
     4861 acagttgcat cacaacagga gatagcaatg acgttaccga gtggacaccc gaagagcaga
     4921 ttgatcaaaa aatttaccgc actaggcccg tatattcgtg aaggtaagtg cgaagataat
     4981 cgattctttt tcgattgtct ggctgtatgc gtcaacgtga aaccggcacc ggaagtgcgt
     5041 gaattctggg gctggtggat ggagctggaa gcgcaggaat cccgttttac ctacagctac
     5101 cagtttggtc tgttcgataa agcaggcgac tggaagagtg ttccggtaaa agatactgaa
     5161 gtggttgaac gactggagca caccctgcgt gagtttcacg agaagctgcg tgaactgctg
     5221 acgacgctga atctgaagct ggaaccggcg gatgattttc gtgacgagcc ggtgaagtta
     5281 acggcgtgag tgaaatgtgc cggatgcatc acatccggca atatctatta aaactgatac
     5341 gtcatcccaa tcgcgacaat atcatcatta ttaatattca atttgttatc gctatccagt
     5401 tggttgattt tataatcaac aaatgctgac atatttttgt tgaaataata cgtagcaccg
     5461 acgtcgatat aattaaccag atcttcacca ccgatgccct caatatcttt ccctttcgat
     5521 aagacataac ccagcgatgg acgcagacca aagtcaaact ggtattgagc gaccgcttca
     5581 aagttctgtg tcttattggc aaagccgcca gttattggcg tcattttgcg agtttcagaa
     5641 tagaaagttg ccagataaat attattggca tcgtatttca gacctgttgc ccatgcttct
     5701 gcacgcttgc ctgtgccacg gctttgcagg ttctgctcgt tggtgcgatc tgagttggta
     5761 taggccccac taatggcgaa atcgctgccg ccaaagtcat atgtcaatga cgtgccgaag
     5821 ccatcgccgt tttgcttttt aacgtcgcgg ttttcgtttt tcccttgata ttgcagggtt
     5881 aagttcaggc catcgataac gccgaagaag tcggtgttcc gatacgtcgc cagaccgctg
     5941 gcgcgtttgg tcataaagtt gtcggtctgc gccgaggagt cgccaccaaa ttccggaaac
     6001 atatcggtcc aggcttccac gtcatacaac gcgcccaggt tacgaccata atcgaaagaa
     6061 cccaaatctt tatatttcaa cccggcaaaa gcgagacgcg ttttttgctg tgcagtatca
     6121 ctctctgctt tattaccggc aaactctgct tcccaacgac cataaccagt cagttgatcg
     6181 ttaatttgtg tttcgccttt aaaaccaaaa cggatataac tctggtcgcc atctttactg
     6241 tcgttatcac tcatataatg catggcttta actttgccat agacatccag tttattaccg
     6301 tctttgttat atatttctgc ggcctgtacg gatgcagatg ccacaatgcc catcaccact
     6361 aatgccagag tgctcttttt cattttcatt cctgatttta attaacgcgc gaatattcag
     6421 cgggagagcc ccgttgaaaa caggaaagtt tttaacctga gattgttaaa gatatattac
     6481 agattaataa tattcttaaa atgtggtaat ttattaaatc tgtaataaaa gcgtaaacaa
     6541 ctgccgctag gcttgctgat cccgcgcaac aaaacgccat gctttgctcg cagatggttg
     6601 gcaaccgacg acagtcctgc taaaacgttc gtttgatatc atttttccta aaattgaatg
     6661 gcagagaatc atgagtgaca gccagacgct ggtggtaaaa ctcggcacca gtgtgctaac
     6721 aggcggatcg cgccgtctga accgtgccca tatcgttgaa cttgttcgcc agtgcgcgca
     6781 gttacatgcc gccgggcatc ggattgttat tgtgacgtcg ggcgcgatcg ccgccggacg
     6841 tgagcacttg ggttacccgg aactgccagc gactatcgcc tcgaaacaac tgctggcagc
     6901 ggtagggcag agtcgactga ttcaactgtg ggaacagctg ttttcgattt atggcattca
     6961 cgtcgggcaa atgctgctga cccgtgctga tatggaagac cgtgaacgct tcctgaacgc
     7021 ccgcgacacc ctgcgtgcgt tgctcgataa caatatcgtt ccggtaatca atgagaacga
     7081 tgctgtcgct acggcagaga ttaaagtcgg cgataacgat aacctttctg cgctggcggc
     7141 gattctggcg ggtgccgata aactgttgct gctgaccgat caaaaaggtt tgtataccgc
     7201 tgacccgcgc agcaatccgc aggcagaact gattaaagat gtttacggca ttgatgacgc
     7261 actgcgcgcg attgccggtg acagcgtttc aggcctcgga actggcggca tgagtaccaa
     7321 attgcaggcc gctgacgtgg cttgccgtgc gggtatcgac accattattg ccgcgggcag
     7381 caagccgggc gttattggtg atgtgatgga aggcatttcc gtcggtacgc tgttccatgc
     7441 ccaggcgact ccgcttgaaa accgtaaacg ctggattttc ggtgcgccgc cggcgggtga
     7501 aatcacggta gatgaagggg caactgccgc cattctggaa cgcggcagct ccctgttgcc
     7561 gaaaggcatt aaaagcgtga ctggcaattt ctcgcgtggt gaagtcatcc gcatttgcaa
     7621 cctcgaaggt cgcgatatcg cccacggtgt cagtcgttac aacagcgatg cattacgccg
     7681 tattgccgga caccactcgc aagaaattga tgcaatactg ggatatgaat acggcccggt
     7741 tgccgttcac cgtgatgaca tgattacccg ttaaggagct ggccgatgct ggaacaaatg
     7801 ggcattgccg cgaagcaagc ctcgtataaa ttagcgcaac tctccagccg cgaaaaaaat
     7861 cgcgtgctgg aaaaaatcgc cgatgaactg gaagcacaaa gcgaaatcat tctcaacgct
     7921 aacgcccagg atgttgctga cgcgcgagcc aatggcctta gcgaagcgat gcttgaccgt
     7981 ctggcactga cgcccgcacg gctgaaaggc attgccgacg atgtacgtca ggtgtgcaac
     8041 ctcgccgatc cggtggggca ggtaatcgat ggcggcgtac tggacagcgg cctgcgtctt
     8101 gagcgtcgtc gcgtaccgct gggagttatt ggcgtgattt atgaagcgcg cccgaacgtg
     8161 acggttgatg tcgcttcgct gtgcctgaaa accggtaatg cggtgatcct gcgcggtggc
     8221 aaagaaacgt gtcgcactaa cgctgcaacg gtggcggtga ttcaggacgc cctgaaatcc
     8281 tgcggcttac cggcgggtgc cgtgcaggcg attgataatc ctgaccgtgc gctggtcagt
     8341 gaaatgctgc gtatggataa atacatcgac atgctgatcc cgcgtggtgg cgctggtttg
     8401 cataaactgt gccgtgaaca gtcgacaatc ccggtgatca caggtggtat aggcgtatgc
     8461 catatttacg ttgatgaaag tgtagagatc gctgaagcat taaaagtgat cgtcaacgcg
     8521 aaaactcagc gtccgagcac atgtaatacg gttgaaacgt tgctggtgaa taaaaacatc
     8581 gccgatagct tcctgcccgc attaagcaaa caaatggcgg aaagcggcgt gacattacac
     8641 gcagatgcag ctgcactggc gcagttgcag gcaggccctg cgaaggtggt tgctgttaaa
     8701 gccgaagagt atgacgatga gtttctgtca ttagatttga acgtcaaaat cgtcagcgat
     8761 cttgacgatg ccatcgccca tattcgtgaa cacggcacac aacactccga tgcgatcctg
     8821 acctgcgata tgcgcaacgc ccagcgtttt gttaacgaag tggattcgtc cgctgtttac
     8881 gttaacgcct ctacgcgttt taccgacggc ggccagtttg gtctgggtgc ggaagtggcg
     8941 gtaagcacac aaaaactcca cgcgcgtggc ccaatggggc tggaagcact gaccacttac
     9001 aagtggatcg gcattggtga ttacaccatt cgtgcgtaaa taaaaccggg tgatgcaaaa
     9061 gtagccattt gattcacaag gccattgacg catcgcccgg ttagttttaa ccttgtccac
     9121 cgtgattcac gttcgtgaac atgtcctttc agggccgata tagctcagtt ggtagagcag
     9181 cgcattcgta atgcgaaggt cgtaggttcg actcctatta tcggcaccat ttaaatcaat
     9241 aagttacaca tcattagtac gttccttatt tcttgactgg gacaaatttg ggaccgatgg
     9301 gttcagaatc gagtctattt gccgtgcgtg ttcggtaagg tgattaggtg cgaggtgagc
     9361 atatcgacga accatttcga tagactccca gcctcccatt tcctgtaaca ctgataacgg
     9421 gactccggct tgaaccagcc aacttgccca ggtgtgtctc aagtcgtgaa atctgaaatc
     9481 atcaatacct gctcgtctca gcgccgcttt ccaggctgtg tttgcgtcat accgcatctt
     9541 cctgactgtt ggcgctttcg ttccgtctgg tttggtacag ctttccttat acacaaatac
     9601 ccaacggtga tgattcccga tttgtttttt caatacgcga catgcagtat cattcagcgc
     9661 aacgccaatt gcgcggtttg atttactctc ttccgggttt atccatgcca cccggcgctg
     9721 catgtctatt tgttgccatt caaggttgat gatgttcgag cgtcttaagc ctgttgcaag
     9781 tgcaaattca acaacagact ttaatggctc cggacattca tcaatcagcc tttgtgcttc
     9841 atgaggctcc agccagcgga tccgtttatt ctttggttga ggcactttaa taattggtgc
     9901 cttatccagc attttccatt cacgctctgc ggctcttagc agggccttta taaatgaaag
     9961 atgcgtagcc ttcgttgcaa cggacgctgg ttttggcgtg tattctggaa caggtttccc
    10021 tttttttctg catgcttctg ccctgagttt ccagttttcc tcatgacgcc ggttcgtcat
    10081 tttctgcatt gctgaataaa tttttgattc agtaatgtct cttagttgca ttcctgcgaa
    10141 atgttgaagc cagaatccga tccggctttt gtcatcgtcc agtgattttt tatgtgcttt
    10201 ctcttcaagc cacctgacac acgcttcctc gaacgttata tcaggaattt caccaagttt
    10261 gctgacccgc catgcttcag cctttagctt gtcatggagt tctgtcgcct gccttttgtc
    10321 ctttgttcca agagactgtt taaatctttt accgttcggc aatgtgaaac tggcgtacca
    10381 tatttcacct ctgcggaaga gtgacatttt ctttcctctg ttatgccatc acccgcgctc
    10441 acctggacag tatgcagcgg agactgaagc gccgcaatgc aggcttgtcg tgttgtgagg
    10501 taaggagatt tattcttagt gggatctttg cgtgttgcct gcagacgccc tgtgcgtatc
    10561 cagttaatgg cagtcggtct ggatatcttg agaaaatgac aggcctcatc tagcgtgagg
    10621 ctgtatggtt ccattatttc acctcttgct gtgatattgt tgaaaaatga atgccagctc
    10681 gttgttgcca gacgatccaa ccgagagtca tatcccatgc catgtattcg ttatcgccgt
    10741 tttttgctct ccgactatct actaagccac cgaaatgttt ttccataaat aattcatagg
    10801 attcgcgttc atctggctct acttccagag atatgaggta gcctgagttt aacggacact
    10861 ccttcctgaa a
//
LOCUS       DADMJB010000420         9211 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.guided.163, whole genome shotgun sequence.
ACCESSION   DADMJB010000420 DADMJB010000000
VERSION     DADMJB010000420.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9211)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9211)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9211
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.guided.163"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..334)
                     /locus_tag="JN078_004398"
     CDS             complement(<1..334)
                     /locus_tag="JN078_004398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013741669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAY9043322.1"
                     /translation="MLNTRVHQSEVSMATDTPRIPEQGVATLPDEAWERARRRAEIIS
                     PLAQSETVGHEAADMAAQALGLSRRQVYVLIRRARQGSGLVTDLVPGQSGGGKGKGRL
                     PEPVERVIH"
     gene            complement(373..1041)
                     /locus_tag="JN078_004399"
     CDS             complement(373..1041)
                     /locus_tag="JN078_004399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAY9043323.1"
                     /translation="MAQAAARGQLDLHYQPLVDLRDHRIAGAEALMRWRHPRLGLLPP
                     GQFLPLAESFGLMPEIGAWVLGEACRQMHKWQGPAWQPFRLAINVSASQVGPTFDDEV
                     KRVLADMALPAELLEIELTESVAFGNPALFASFDALRAIGVRFAADDFGTGYSCLQHL
                     KCCPITTLKIDQSFVARLPDDARDQTIVRAVIQLAHGLGMDVIFRRRLHQLIGRNGCC
                     AASS"
     gene            complement(1077..1313)
                     /gene="merE"
                     /locus_tag="JN078_004400"
     CDS             complement(1077..1313)
                     /gene="merE"
                     /locus_tag="JN078_004400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="broad-spectrum mercury transporter MerE"
                     /protein_id="HAY9043324.1"
                     /translation="MNAPDKLPPETRQPVSGYLWGALAVLTCPCHLPILAAVLAGTTA
                     GAFLGEHWGVAALALTGLFVLAVTRLLRAFRGGS"
     gene            complement(1310..1672)
                     /gene="merD"
                     /locus_tag="JN078_004401"
     CDS             complement(1310..1672)
                     /gene="merD"
                     /locus_tag="JN078_004401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mercury resistance co-regulator MerD"
                     /protein_id="HAY9043325.1"
                     /translation="MSAYTVSQLAHNAGVSVHIVRDYLVRGLLRPVACTTGGYGVFDD
                     AALQRLCFVRAAFEAGIGLDALARLCRALDAADGAQAAAQLAVLRQLVERRRAALAHL
                     DAQLASMPAERAHEEALP"
     gene            complement(1690..3384)
                     /locus_tag="JN078_004402"
     CDS             complement(1690..3384)
                     /locus_tag="JN078_004402"
                     /EC_number="1.16.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004636758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mercury(II) reductase"
                     /protein_id="HAY9043326.1"
                     /translation="MSTLKITGMTCDSCAVHVKDALEKVPGVQSADVSYAKGSAKLAI
                     EVGTSPDALTAAVAGLGYRATLADAPSVSTPGGLLDKMRDLLGRNDKTGSSGALHIAV
                     IGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESP
                     FDGGIAATTPTIQRTALLAQQQARVDELRHAKYEGILEGNPAITVLHGSARFKDNRNL
                     IVQLNDGGERVVAFDRCLIATGASPAVPPIPGLKDTPYWTSTEALVSETIPKRLAVIG
                     SSVVALELAQAFARLGAKVTILARSTLFFREDPAIGEAVTAAFRMEGIEVREHTQASQ
                     VAYINGEGDGEFVLTTAHGELRADKLLVATGRAPNTRKLALDATGVTLTPQGAIVIDP
                     GMRTSVEHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALNLTAMPAVVFTDPQV
                     ATVGYSEAEAHHDGIKTDSRTLTLDNVPRALANFDTRGFIKLVVEEGSGRLIGVQAVA
                     PEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFNKDVKQLSCCAG"
     gene            complement(3436..3858)
                     /gene="merC"
                     /locus_tag="JN078_004403"
     CDS             complement(3436..3858)
                     /gene="merC"
                     /locus_tag="JN078_004403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016239395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organomercurial transporter MerC"
                     /protein_id="HAY9043327.1"
                     /translation="MGLMTRIADKTGALGSVVSAMGCAACFPALASFGAAIGLGFLSQ
                     YEGLFISRLLPLFAALAFLANALGWFSHRQWLRSLLGMIGPAIVFAATVWLLGNWWTA
                     NLMYVGLALMIGVSIWDFVSPAHRRCGPDGCELPAKRL"
     gene            complement(3894..4169)
                     /gene="merP"
                     /locus_tag="JN078_004404"
     CDS             complement(3894..4169)
                     /gene="merP"
                     /locus_tag="JN078_004404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mercury resistance system periplasmic binding
                     protein MerP"
                     /protein_id="HAY9043328.1"
                     /translation="MKKLFASLALAAAVAPVWAATQTVTLAVPGMTCAACPITVKKAL
                     SKVEGVSKVDVGFEKREAVVTFDDTKASVQKLTKATADAGYPSSVKQ"
     gene            complement(4183..4533)
                     /locus_tag="JN078_004405"
     CDS             complement(4183..4533)
                     /locus_tag="JN078_004405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011111453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mercuric transport protein MerT"
                     /protein_id="HAY9043329.1"
                     /translation="MSEPQNGRGALFAGGLAAILASTCCLGPLVLVALGFSGAWIGNL
                     TVLEPYRPLFIGAALVALFFAWKRIYRPVQACKPGEVCAIPQVRATYKLIFWIVAVLV
                     LVALGFPYVVPFFY"
     gene            4605..5039
                     /gene="merR"
                     /locus_tag="JN078_004406"
     CDS             4605..5039
                     /gene="merR"
                     /locus_tag="JN078_004406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hg(II)-responsive transcriptional regulator"
                     /protein_id="HAY9043330.1"
                     /translation="MENNLENLTIGVFAKAAGVNVETIRFYQRKGLLREPDKPYGSIR
                     RYGEADVVRVKFVKSAQRLGFSLDEIAELLRLDDGTHCEEASSLAEHKLKDVREKMAD
                     LARMETVLSELVCACHARKGNVSCPLIASLQGEAGLARSAMP"
     gene            6042..6284
                     /locus_tag="JN078_004407"
     CDS             6042..6284
                     /locus_tag="JN078_004407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000844627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase"
                     /protein_id="HAY9043331.1"
                     /translation="MKTAALDLARERQAHEAGARTRATAHERTPQQERQKAAREAERG
                     REAWTLGQGMKKPVAGCYGRLTRWKGGGDVVYMALL"
     gene            complement(6316..6966)
                     /gene="tetR(A)"
                     /locus_tag="JN078_004408"
     CDS             complement(6316..6966)
                     /gene="tetR(A)"
                     /locus_tag="JN078_004408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000164043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance transcriptional
                     repressor TetR(A)"
                     /protein_id="HAY9043332.1"
                     /translation="MTKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWH
                     FRNKRALLDALAEAMLAENHTHSVPRADDDWRSFLIGNARSFRQALLAYRDGARIHAG
                     TRPGAPQMETADAQLRFLCEAGFSAGDAVNALMTISYFTVGAVLEEQAGDSDAGERGG
                     TVEQAPLSPLLRAAIDAFDEAGPDAAFEQGLAVIVDGLAKRRLVVRNVEGPRKGDD"
     gene            7072..8271
                     /gene="tet(A)"
                     /locus_tag="JN078_004409"
     CDS             7072..8271
                     /gene="tet(A)"
                     /locus_tag="JN078_004409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000804064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline efflux MFS transporter Tet(A)"
                     /protein_id="HAY9043333.1"
                     /translation="MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAH
                     YGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG
                     RIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPH
                     APFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAV
                     FFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGE
                     RRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQG
                     QLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRRGLWSG
                     AGQRADR"
     gene            complement(8303..9163)
                     /locus_tag="JN078_004410"
     CDS             complement(8303..9163)
                     /locus_tag="JN078_004410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000493383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HAY9043334.1"
                     /translation="MFTAIAPAIWGSTYIVTTQYLPNFSPMTVAMLRALPAGLLLVMI
                     VRQIPTGIWWMRIFILGALNISLFWSLLFISVYRLPGGVAATVGAVQPLMVVFISAAL
                     LGSPIRLMAVLGAICGTAGVALLVLTPNAALDPVGVAAGLAGAVSMAFGTVLTRKWQP
                     PVPLLTFTAWQLAAGGLLLVPVALVFDPPIPMPTGTNVLGLAWLGLIGAGLTYFLWFR
                     GISRLEPTVVSLLGFLSPGTAVLLGWLFLDQTLSALQIIGVLLVIGSIWLGQRSNRTP
                     RARIACRKSP"
BASE COUNT         1711 a         2919 c         2912 g         1669 t
ORIGIN      
        1 cgtggatgac gcgctcgacc ggttccggca agcgcccctt acctttacct ccaccggact
       61 ggccgggcac cagatccgtc acgaggccgc tgccttgccg ggcacgccgg atcagaacgt
      121 atacctggcg ccgagacaag cccagcgcct gagccgccat atcggccgct tcgtgcccga
      181 ccgtctccga ctgcgccaac ggactgatga tctccgcacg acggcgcgca cgctcccaag
      241 cctcatcagg cagagtggcc acgccttgtt ctggaatccg tggggtgtcc gtcgccatgc
      301 tcacctcgct ttggtgcaca cgagtattga gcatagtcga gattggtgca gatcacttct
      361 gatattgaac tgtcaggagc tggctgcaca acagccatta cgcccaatca actggtgcag
      421 tcgtcttctg aaaatgacat ccatgcccag cccgtgcgcg agctggatca ccgcccgcac
      481 gatagtttgg tcacgggcat catccgggag cctggcgaca aaggattggt cgattttcaa
      541 tgtggtgatg gggcagcatt tcagatgttg caggcaggaa tagccggtgc cgaagtcgtc
      601 ggcggcgaag cgcacgccga tggcgcgcaa ggcgtcgaaa ctggcgaaca gggctggatt
      661 gccgaatgcg accgattcgg tcagttcgat ctccagaagc tcggcgggca gggccatatc
      721 ggccagcacc cgctttacct cgtcgtcgaa cgttggccca acctggctgg cggacacatt
      781 gatggcaaga cggaacggtt gccatgccgg tccttgccac ttgtgcatct ggcgacaggc
      841 ctcgcccagc acccacgcgc ctatttccgg catcaggccg aacgactcgg ccagcggcag
      901 gaactggccg ggcggcaaca ggccaagcct cggatgccgc cagcgcatca acgcttccgc
      961 gccagcgatc cggtgatcgc gcagatcgac cagcggctgg taatgcaggt caagctgtcc
     1021 gcgcgccgcc gcctgcgcca actcggccgc cgtccatccg gcgggctgcg aactcgtcat
     1081 gatccgcccc ggaaggcgcg cagcagccgc gttacggcca gaacgaacaa gccggtcagc
     1141 gcgagcgcgg caacacccca atgctcgcca aggaaggcac cggcggtcgt cccggccagc
     1201 acggcggcga gaatcggcag atggcagggg caggtcaaca cggccagcgc accccacagg
     1261 tagccggaaa cgggttggcg cgtctcgggc ggcagtttgt caggggcgtt cacggcaatg
     1321 cctcctcgtg cgcccgctcg gctggcatgg aggccagttg cgcgtccaga tgggccaacg
     1381 ccgcgcgccg ccgctcgacc aactggcgca gcacggcaag ctgcgctgcg gcttgtgcgc
     1441 cgtccgctgc gtcgagcgca cggcacagcc gcgccagggc atccaggccg atacccgcct
     1501 cgaaggccgc gcgcacgaag cacagccgtt gcaaggccgc atcgtcgaac acgccgtagc
     1561 cgcccgtggt gcaggccacc ggccgtaaca agccgcgcac caggtagtcg cgcacgatat
     1621 gtacgctcac cccagcgtta tgggccagtt gcgataccgt gtaggcgctc atcgcacacc
     1681 tccttgtcct cacccggcgc agcaggaaag ctgcttcaca tccttgttga aggtctgcgc
     1741 cgcgagcttc aacccttcga ccatcgtcag gtaggggaac aactggtcgg ccagttcctg
     1801 caccgtcatc cggttgcgaa tcgccagtgc ggccgtctgg atcagttcgc ccgcttccgg
     1861 ggccactgcc tgcacgccga tcagtcgtcc gctgccttct tcaaccacca gtttgatgaa
     1921 gccgcgcgtg tcgaagttgg cgagcgcgcg cggcacgttg tccagcgtta gcgtgcgact
     1981 atcagttttg atgccgtcat ggtgcgcttc cgcctcgctg tagcctacgg tcgccacttg
     2041 cgggtcggtg aacaccacgg ccggcatcgc ggtcaggttc agggccgcgt caccgccggt
     2101 catgttgatc gcggcgcgag tgccggccgc tgccgccaca tagacgaact gcggctggtc
     2161 ggtgcagtcg cctgcggcgt agatgtgttc cacgcttgta cgcatgccgg ggtcgatgac
     2221 gatagcgcct tgcggggtga gcgtgacgcc cgtcgcatcc agtgccagct tgcgtgtgtt
     2281 gggcgcgcgg ccggtggcga ccagcagctt gtcggcgcgc agttcgccgt gcgccgtggt
     2341 gagcacgaat tcgccgtccc cttcaccatt gatatacgcg acctggctgg cctgggtgtg
     2401 ttccctcacc tcgatgccct ccatgcggaa tgcggccgtg acggcttcgc ctatagctgg
     2461 gtcttcgcgg aagaacagcg tgctgcgagc caggatcgtc accttcgctc cgagtcgggc
     2521 gaacgcctgc gccagctcca gcgccaccac tgatgagcca atcacggcca ggcgcttagg
     2581 aatcgtctcg ctgaccagcg cttcagtgga agtccagtac ggagtgtctt tcaggccggg
     2641 aatcggcggc acggccgggc tcgcgccggt ggcgatcagg cagcggtcga atgccaccac
     2701 gcgctcgccg ccgtcgttga gttgcacgat caggttgcga ttgtccttaa agcgggcgga
     2761 gccgtgcagc acagtgatcg ccggattgcc ctccaagatg ccttcgtact tggcgtggcg
     2821 cagttcatcg acgcgggcct gctgctgggc cagcagcgcc gtgcgctgga tggtcggcgt
     2881 ggtagcggcg atgccgccat cgaacgggct ttcccggcgc agatgggcga tatgggcggc
     2941 gcggatcatg atcttggacg gcacacaacc gacattgacg caggtgccgc cgatggtgcc
     3001 gcgctcgatc agcgtgacac gtgcgccttg ctcgacggcc ttcagcgccg ctgccatcgc
     3061 ggccccgccg ctgccgatga cggcgatatg caatgcgccg ctgctacccg tcttgtcgtt
     3121 tctgcccagc agatcgcgca tcttgtcgag caatccgccc ggcgtcgaaa ctgagggggc
     3181 atcggccagc gtggcccgat aaccgagtcc agctacagcg gccgtcagcg cgtcgggtga
     3241 cgtgccgacc tcaatggcga gcttggcgct gcccttggcg taggagacat ccgctgattg
     3301 cacgccgggc actttctcca gggcgtcctt gacatgcact gcgcacgagt cgcaagtcat
     3361 gccggtgatt ttgagagtgc tcataccatc gttccttatt cgtgtgggcc gccgtgtcgc
     3421 acggtcagcc gtctttcaca agcgcttggc ggggagttcg cagccgtccg gtccgcaacg
     3481 gcgatgcgcc ggcgacacga agtcccagat cgacacccca atcatcaagg ccaggccgac
     3541 gtacatcagg ttcgccgtcc accagttgcc gagcagccag accgtggccg caaacacgat
     3601 ggccgggccg atcatgccga gcagactgcg cagccattgc cgatgactga accaacccag
     3661 cgcgttcgcc aggaaggcca gcgcggcaaa cagcggcagc aggcggctga tgaacagtcc
     3721 ctcgtactgg ctcaagaagc ccagcccgat ggccgcgccg aagctggcga gggctggaaa
     3781 gcaggcggcg cagcccatcg cggaaacgac gctgccgagc gcgccggttt tatcggcaat
     3841 gcgtgtcatc agtcccatga agcggctctc gctgttgtcg ttggcttgct ggctcactgc
     3901 ttgacgctgg acggatagcc ggcgtctgcg gtggccttgg tcagcttctg tacgctggcc
     3961 ttggtgtcgt caaaagtgac gacggcctcg cgcttctcga agcccacatc gaccttgctc
     4021 acgccttcga ccttggagag cgctttcttg actgtgatcg ggcaggcggc gcaagtcatg
     4081 ccgggaaccg ctagcgtgac ggtctgggta gcggcccaca ccggggcaac agcggcggcg
     4141 agggcaaggg aggcaaacag tttcttcatg atgaactcct ggttaataga aaaatggaac
     4201 gacataggga aatccaagcg cgaccaggac cagcacggcc acgatccaga aaatcagctt
     4261 gtaggtggcg cgcacctgcg gaatcgcgca gacctcacct ggcttgcatg cctgcacggg
     4321 ccggtaaatc cgcttccagg cgaagaacag cgccactagc gccgcgccga tgaacaacgg
     4381 tcgatagggt tccagcaccg tcaggttgcc gatccaagca ccggagaagc ccagggcgac
     4441 cagtactagc ggccccaggc agcaggtcga tgcaagaatg gcggccagcc cgccggcgaa
     4501 gagcgcaccg cgcccgtttt gtggttcaga catacgttgg cccttttgaa tttggattgg
     4561 atagcgtaac cttacttccg tactcatgta cggagtcaag cgatatggaa aataatttgg
     4621 aaaacctgac cattggcgtt tttgccaagg cggccggggt caacgtggag acaatccgct
     4681 tctatcagcg caagggcctg ttgcgggaac cggacaagcc ttacggcagc atccgccgct
     4741 atggggaggc ggacgtggtt cgggtgaaat tcgtgaaatc ggcacagcgg ctggggttca
     4801 gtctggacga gattgccgag ctgttgcggc tcgacgatgg cacccactgc gaggaggcca
     4861 gcagcctggc cgaacacaag ctcaaggacg tgcgcgagaa gatggccgac ttggcgcgca
     4921 tggaaaccgt gctgtctgaa ctcgtgtgcg cctgccatgc acgaaagggg aatgtttcct
     4981 gcccgttgat cgcgtcacta cagggcgaag caggcctggc aaggtcagct atgccttagc
     5041 gtgctttatt ttccgttttc tgaggtgccc cctaattgag catttccagg cgcttgcgcc
     5101 tggtcaacga aagagtcagc gccgtaggcg ctgccatttt tggggtgagg ccgttcgcgg
     5161 ccgaggggcg cagcccctgg ggggatggga ggcccgcgtt agcgggccgg gagggttcga
     5221 gaaggggggg cacccccctt cggcgtgcgc ggtcacgcgc acagggcgca gccctggtta
     5281 aaaacaaggt ttataaatat tggtttaaaa gcaggttaaa agacaggtta gcggtggccg
     5341 aaaaacgggc ggaaaccctt gcaaatgctg gattttctgc ctgtggacag cccctcaaat
     5401 gtcaataggt gcgcccctca tctgtcagca ctctgcccct caagtgtcaa ggatcgcgcc
     5461 cctcatctgt cagtagtcgc gcccctcaag tgtcaatacc gcagggcact tatccccagg
     5521 cttgtccaca tcatctgtgg gaaactcgcg taaaatcagg cgttttcgcc gatttgcgag
     5581 gctggccagc tccacgtcgc cggccgaaat cgagcctgcc cctcatctgt caacgccgcg
     5641 ccgggtgagt cggcccctca agtgtcaacg tccgcccctc atctgtcagt gagggccaag
     5701 ttttccgcga ggtatccaca acgccggcgg ccgcggtgtc tcgcacacgg cttcgacggc
     5761 gtttctggcg cgtttgcagg gccatagacg gccgccagcc cagcggcgag ggcaaccagc
     5821 ccggtgagcg tcggaaaggc gctggaagcc ccgtagcgac gcggagaggg gcgagacaag
     5881 ccaagggcgc aggctcgatg cgcagcacga catagccggt tctcgcaagg acgagaattt
     5941 ccctgcggtg cccctcaagt gtcaatgaaa gtttccaacg cgagccattc gcgagagcct
     6001 tgagtccacg ctagatctat ctcatctgcg caaggcagaa cgtgaagacg gccgccctgg
     6061 acctcgcccg cgagcgccag gcgcacgagg ccggcgcgcg gacccgcgcc acggcccacg
     6121 agcggacgcc gcagcaggag cgccagaagg ccgccagaga ggccgagcgc ggccgtgagg
     6181 cttggacgct agggcagggc atgaaaaagc ccgtagcggg ctgctacggg cgtctgacgc
     6241 ggtggaaagg gggaggggat gttgtctaca tggctctgct gtagtgagtg ggttgcgctc
     6301 cggcagcggt cctgatcaat cgtcaccctt tctcggtcct tcaacgttcc tgacaacgag
     6361 cctccttttc gccaatccat cgacaatcac cgcgagtccc tgctcgaacg ctgcgtccgg
     6421 accggcttcg tcgaaggcgt ctatcgcggc ccgcaacagc ggcgagagcg gagcctgttc
     6481 aacggtgccg ccgcgctcgc cggcatcgct gtcgccggcc tgctcctcaa gcacggcccc
     6541 aacagtgaag tagctgattg tcatcagcgc attgacggcg tccccggccg aaaaacccgc
     6601 ctcgcagagg aagcgaagct gcgcgtcggc cgtttccatc tgcggtgcgc ccggtcgcgt
     6661 gccggcatgg atgcgcgcgc catcgcggta ggcgagcagc gcctgcctga agctgcgggc
     6721 attcccgatc agaaatgagc gccagtcgtc gtcggctctc ggcaccgaat gcgtatgatt
     6781 ctccgccagc atggcttcgg ccagtgcgtc gagcagcgcc cgcttgttcc tgaagtgcca
     6841 gtaaagcgcc ggctgctgaa cccccaaccg ttccgccagt ttgcgtgtcg tcagaccgtc
     6901 tacgccgacc tcgttcaaca ggtccagggc ggcacggatc actgtattcg gctgcaactt
     6961 tgtcatgctt gacactttat cactgataaa cataatatgt ccaccaactt atcagtgata
     7021 aagaatccgc gcgttcaatc ggaccagcgg aggctggtcc ggaggccaga cgtgaaaccc
     7081 aacagacccc tgatcgtaat tctgagcact gtcgcgctcg acgctgtcgg catcggcctg
     7141 attatgccgg tgctgccggg cctcctgcgc gatctggttc actcgaacga cgtcaccgcc
     7201 cactatggca ttctgctggc gctgtatgcg ttgatgcaat ttgcctgcgc acctgtgctg
     7261 ggcgcgctgt cggatcgttt cgggcggcgg ccggtcttgc tcgtctcgct ggccggcgct
     7321 gctgtcgact acgccatcat ggcgacggcg cctttccttt gggttctcta tatcgggcgg
     7381 atcgtggccg gcatcaccgg ggcgactggg gcggtagccg gcgcttatat tgccgatatc
     7441 actgatggcg atgagcgcgc gcggcacttc ggcttcatga gcgcctgttt cgggttcggg
     7501 atggtcgcgg gacctgtgct cggtgggctg atgggcggtt tctcccccca cgctccgttc
     7561 ttcgccgcgg cagccttgaa cggcctcaat ttcctgacgg gctgtttcct tttgccggag
     7621 tcgcacaaag gcgaacgccg gccgttacgc cgggaggctc tcaacccgct cgcttcgttc
     7681 cggtgggccc ggggcatgac cgtcgtcgcc gccctgatgg cggtcttctt catcatgcaa
     7741 cttgtcggac aggtgccggc cgcgctttgg gtcattttcg gcgaggatcg ctttcactgg
     7801 gacgcgacca cgatcggcat ttcgcttgcc gcatttggca ttctgcattc actcgcccag
     7861 gcaatgatca ccggccctgt agccgcccgg ctcggcgaaa ggcgggcact catgctcgga
     7921 atgattgccg acggcacagg ctacatcctg cttgccttcg cgacacgggg atggatggcg
     7981 ttcccgatca tggtcctgct tgcttcgggt ggcatcggaa tgccggcgct gcaagcaatg
     8041 ttgtccaggc aggtggatga ggaacgtcag gggcagctgc aaggctcact ggcggcgctc
     8101 accagcctga cctcgatcgt cggacccctc ctcttcacgg cgatctatgc ggcttctata
     8161 acaacgtgga acgggtgggc atggattgca ggcgctgccc tctacttgct ctgcctgccg
     8221 gcgctgcgtc gcgggctttg gagcggcgca gggcaacgag ccgatcgctg atcgtggaaa
     8281 cgataggcct atgccatgcg ggtcaaggcg acttccggca agctatacgc gccctaggag
     8341 tgcggttgga acgttggccc agccagatac tcccgatcac gagcaggacg ccgatgattt
     8401 gaagcgcact cagcgtctga tccaagaaca accatcctag caacacggcg gtccccgggc
     8461 tgagaaagcc cagtaaggaa acaactgtag gttcgagtcg cgagatcccc cggaaccaaa
     8521 ggaagtaggt taaacccgct ccgatcaggc cgagccacgc caggccgaga acattggttc
     8581 ctgtaggcat cgggattggc ggatcaaaca ctaaagctac tggaacgagc agaagtcctc
     8641 cggccgccag ttgccaggcg gtaaaggtga gcagaggcac gggaggttgc cacttgcggg
     8701 tcagcacggt tccgaacgcc atggaaaccg cccccgccag gcccgctgcg acgccgacag
     8761 gatctagcgc tgcgtttggt gtcaacacca acagcgccac gcccgcagtt ccgcaaatag
     8821 cccccaggac cgccatcaat cgtatcgggc tacctagcag agcggcagag atgaacacga
     8881 ccatcagcgg ctgcacagcg cctaccgtcg ccgcgacccc gcccggcagg cggtagaccg
     8941 aaataaacaa caagctccag aatagcgaaa tattaagtgc gccgaggatg aagatgcgca
     9001 tccaccagat tcccgttgga atctgtcgga cgatcatcac gagcaataaa cccgccggca
     9061 acgcccgcag catcgcgacc gtcatcggtg agaagttcgg caggtattgg gtggtgacaa
     9121 tgtaggtgct gccccaaatg gcaggtgcta tcgctgtgaa caataaatcg gggcagacgg
     9181 cgcttccagc gtgacgacca tgccgagcac g
//
LOCUS       DADMJB010000421         2584 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.guided.280, whole genome shotgun sequence.
ACCESSION   DADMJB010000421 DADMJB010000000
VERSION     DADMJB010000421.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2584)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2584)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2584
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.guided.280"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            22..837
                     /gene="sul2"
                     /locus_tag="JN078_004411"
     CDS             22..837
                     /gene="sul2"
                     /locus_tag="JN078_004411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001043260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfonamide-resistant dihydropteroate synthase
                     Sul2"
                     /protein_id="HAY9043335.1"
                     /translation="MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADV
                     IDLGPASSNPDAAPVSSDTEIERIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAY
                     LNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAA
                     LTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRA
                     LTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR"
     gene            898..1701
                     /locus_tag="JN078_004412"
                     /note="aph(3'')-Ib"
     CDS             898..1701
                     /locus_tag="JN078_004412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010890156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(3'')-Ib"
                     /protein_id="HAY9043336.1"
                     /translation="MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASR
                     RGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAW
                     PSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLL
                     ARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLA
                     LMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG"
     gene            1701..2537
                     /locus_tag="JN078_004413"
     CDS             1701..2537
                     /locus_tag="JN078_004413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000480972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(6)-Id"
                     /protein_id="HAY9043337.1"
                     /translation="MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLK
                     PIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATE
                     IAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMM
                     SNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDP
                     RRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQT
                     SY"
BASE COUNT          509 a          713 c          757 g          605 t
ORIGIN      
        1 attattatta tagaagcccc catgaataaa tcgctcatca ttttcggcat cgtcaacata
       61 acctcggaca gtttctccga tggaggccgg tatctggcgc cagacgcagc cattgcgcag
      121 gcgcgtaagc tgatggccga gggggcagat gtgatcgacc tcggtccggc atccagcaac
      181 cccgacgccg cgcctgtttc gtccgacaca gaaatcgagc gtatcgcgcc ggtgctggac
      241 gcgctcaagg cagatggcat tcccgtctcg ctcgacagtt atcaacccgc gacgcaagcc
      301 tatgccttgt cgcgtggtgt ggcctatctc aatgatattc gcggttttcc agacgctgcg
      361 ttctatccgc aattggcgaa atcatctgcc aaactcgtcg ttatgcattc ggtgcaagac
      421 gggcaggcag atcggcgcga ggcacccgct ggcgacatca tggatcacat tgcggcgttc
      481 tttgacgcgc gcatcgcggc gctgacgggt gccggtatca aacgcaaccg ccttgtcctt
      541 gatcccggca tggggttttt tctgggggct gctcccgaaa cctcgctctc ggtgctggcg
      601 cggttcgatg aattgcggct gcgcttcgat ttgccggtgc ttctgtctgt ttcgcgcaaa
      661 tcctttctgc gcgcgctcac aggccgtggt ccgggggatg tcggggccgc gacactcgct
      721 gcagagcttg ccgccgccgc aggtggagct gacttcatcc gcacacacga gccgcgcccc
      781 ttgcgcgacg ggctggcggt attggcggcg ctaaaagaaa ccgcaagaat tcgttaactg
      841 cacattcggg atatttctct atattcgcgc ttcatcagaa aactgaagga acctccattg
      901 aatcgaacta atattttttt tggtgaatcg cattctgact ggttgcctgt cagaggcgga
      961 gaatctggtg attttgtttt tcgacgtggt gacgggcatg ccttcgcgaa aatcgcacct
     1021 gcttcccgcc gcggtgagct cgctggagag cgtgaccgcc tcatttggct caaaggtcga
     1081 ggtgtggctt gccccgaggt catcaactgg caggaggaac aggagggtgc atgcttggtg
     1141 ataacggcaa ttccgggagt accggcggct gatctgtctg gagcggattt gctcaaagcg
     1201 tggccgtcaa tggggcagca acttggcgct gttcacagcc tatcggttga tcaatgtccg
     1261 tttgagcgca ggctgtcgcg aatgttcgga cgcgccgttg atgtggtgtc ccgcaatgcc
     1321 gtcaatcccg acttcttacc ggacgaggac aagagtacgc cgcagctcga tcttttggct
     1381 cgtgtcgaac gagagctacc ggtgcggctc gaccaagagc gcaccgatat ggttgtttgc
     1441 catggtgatc cctgcatgcc gaacttcatg gtggacccta aaactcttca atgcacgggt
     1501 ctgatcgacc ttgggcggct cggaacagca gatcgctatg ccgatttggc actcatgatt
     1561 gctaacgccg aagagaactg ggcagcgcca gatgaagcag agcgcgcctt cgctgtccta
     1621 ttcaatgtat tggggatcga agcccccgac cgcgaacgcc ttgccttcta tctgcgattg
     1681 gaccctctga cttggggttg atgttcatgc cgcctgtttt tcctgctcat tggcacgttt
     1741 cgcaacctgt tctcattgcg gacacctttt ccagcctcgt ttggaaagtt tcattgccag
     1801 acgggactcc tgcaatcgtc aagggattga aacctataga agacattgct gatgaactgc
     1861 gcggggccga ctatctggta tggcgcaatg ggaggggagc agtccggttg ctcggtcgtg
     1921 agaacaatct gatgttgctc gaatatgccg gggagcgaat gctctctcac atcgttgccg
     1981 agcacggcga ctaccaggcg accgaaattg cagcggaact aatggcgaag ctgtatgccg
     2041 catctgagga acccctgcct tctgcccttc tcccgatccg ggatcgcttt gcagctttgt
     2101 ttcagcgggc gcgcgatgat caaaacgcag gttgtcaaac tgactacgtc cacgcggcga
     2161 ttatagccga tcaaatgatg agcaatgcct cggaactgcg tgggctacat ggcgatctgc
     2221 atcatgaaaa catcatgttc tccagtcgcg gctggctggt gatagatccc gtcggtctgg
     2281 tcggtgaagt gggctttggc gccgccaata tgttctacga tccggctgac agagacgacc
     2341 tttgtctcga tcctagacgc attgcacaga tggcggacgc attctctcgt gcgctggacg
     2401 tcgatccgcg tcgcctgctc gaccaggcgt acgcttatgg gtgcctttcc gcagcttgga
     2461 acgcggatgg agaagaggag caacgcgatc tagctatcgc ggccgcgatc aagcaggtgc
     2521 gacagacgtc atactagata tcaagggcac tgttgcaaag ttagcgatga ggcagccttt
     2581 tgtc
//
LOCUS       DADMJB010000422         2430 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.guided.286, whole genome shotgun sequence.
ACCESSION   DADMJB010000422 DADMJB010000000
VERSION     DADMJB010000422.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2430)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2430)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2430
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.guided.286"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            complement(<1..482)
                     /locus_tag="JN078_004414"
     CDS             complement(<1..482)
                     /locus_tag="JN078_004414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HAY9043338.1"
                     /translation="MKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAF
                     IRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQ
                     EIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRIRALLQIVGGDKLI
                     "
     gene            640..1113
                     /locus_tag="JN078_004415"
     CDS             640..1113
                     /locus_tag="JN078_004415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001389366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethoprim-resistant dihydrofolate reductase
                     DfrA7"
                     /protein_id="HAY9043339.1"
                     /translation="MKISLISATSENGVIGNGPDIPWSAKGEQLLFKALTYNQWLLVG
                     RKTFDSMGVLPNRKYAVVSRKGISSSNENVLVFPSIEIALQELSKITDHLYVSGGGQI
                     YNSLIEKADIIHLSTVHVEVEGDINFPKIPENFNLVFEQFFLSNINYTYQIWKKG"
     gene            1343..1690
                     /locus_tag="JN078_004416"
     CDS             1343..1690
                     /locus_tag="JN078_004416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000679427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound efflux SMR
                     transporter QacE delta 1"
                     /protein_id="HAY9043340.1"
                     /translation="MKGWLFLVIAIVGEVIATSALKSSEGFTKLAPSAVVIIGYGIAF
                     YFLSLVLKSIPVGVAYAVWSGLGVVIITAIAWLLHGQKLDAWGFVGMGLIIAAFLLAR
                     SPSWKSLRRPTPW"
     gene            1684..>2430
                     /gene="folP"
                     /locus_tag="JN078_004417"
     CDS             1684..>2430
                     /gene="folP"
                     /locus_tag="JN078_004417"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019727244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HAY9043341.1"
                     /translation="MVTVFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDV
                     GPAASHPDARPVSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQRYALKRGVGYLND
                     IQGFPDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSAL
                     RRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKSALGLPLLVSVSRKSFLGAT
                     VGLPVKDLGPASLAAELHGHCCKVSDEAAFC"
BASE COUNT          566 a          616 c          632 g          616 t
ORIGIN      
        1 atgataagtt tatcaccacc gactatttgc aacagtgccc tgatccgcat gcccgttcca
       61 tacagaagct gggcgaacaa acgatgctcg ccttccagaa aaccgaggat gcgaaccact
      121 tcatccgggg tcagcaccac cggcaagcgc cgcgacggcc gaggtcttcc gatctcctga
      181 agccagggca gatccgtgca cagcaccttg ccgtagaaga acagcaaggc cgccaatgcc
      241 tgacgatgcg tggagaccga aaccttgcgc tcgttcgcca gccaggacag aaatgcctcg
      301 acttcgctgc tgcccaaggt tgccgggtga cgcacaccgt ggaaacggat gaaggcacga
      361 acccagtgga cataagcctg ttcggttcgt aagctgtaat gcaagtagcg tatgcgctca
      421 cgcaactggt ccagaacctt gaccgaacgc agcggtggta acggcgcagt ggcggttttc
      481 atggcttgtt atgactgttt ttttgtacag tctatgcctc gggcatccaa gcagcaagcg
      541 cgttacgccg tgggtcgatg tttgatgtta tggagcagca acgatgttac gcagcagggc
      601 agtcgcccta aaacaaagtt agccattacg ggggttgaat tgaaaatttc attgatttct
      661 gcaacgtcag aaaatggcgt aatcggtaat ggccctgata tcccatggtc agcaaaaggt
      721 gagcagttac tctttaaagc gctcacatat aatcagtggc tccttgttgg aaggaaaaca
      781 tttgactcta tgggtgttct tccaaatcga aaatatgcag tagtgtcgag gaaaggaatt
      841 tcaagctcaa atgaaaatgt attagtcttt ccttcaatag aaatcgcttt gcaagaacta
      901 tcgaaaatta cagatcattt atatgtctct ggtggcggtc aaatctacaa tagtcttatt
      961 gaaaaagcag atataattca tttgtctact gttcacgttg aggttgaagg tgatatcaat
     1021 tttcctaaaa ttccagagaa tttcaatttg gtttttgagc agtttttttt gtctaatata
     1081 aattacacat atcagatttg gaaaaaaggc taacaagtcg ttccagcacc agtcgctgcg
     1141 ctccttggac agtttttaag tcgcggtttt atggttttgc tgcgcaaaag tattccataa
     1201 aaccacaact taaaaactgc cgctgaactc ggcgttagat gcactaagca cataattgct
     1261 cacagccaaa ctatcaggtc aagtctgctt ttattatttt taagcgtgca taataagccc
     1321 tacacaaatt gggagatata tcatgaaagg ctggcttttt cttgttatcg caatagttgg
     1381 cgaagtaatc gcaacatccg cattaaaatc tagcgagggc tttactaagc ttgccccttc
     1441 cgccgttgtc ataatcggtt atggcatcgc attttatttt ctttctctgg ttctgaaatc
     1501 catccctgtc ggtgttgctt atgcagtctg gtcgggactc ggcgtcgtca taattacagc
     1561 cattgcctgg ttgcttcatg ggcaaaagct tgatgcgtgg ggctttgtag gtatggggct
     1621 cataattgct gcctttttgc tcgcccgatc cccatcgtgg aagtcgctgc ggaggccgac
     1681 gccatggtga cggtgttcgg cattctgaat ctcaccgagg actccttctt cgatgagagc
     1741 cggcggctag accccgccgg cgctgtcacc gcggcgatcg aaatgctgcg agtcggatca
     1801 gacgtcgtgg atgtcggacc ggccgccagc catccggacg cgaggcctgt atcgccggcc
     1861 gatgagatca gacgtattgc gccgctctta gacgccctgt ccgatcagat gcaccgtgtt
     1921 tcaatcgaca gcttccaacc ggaaacccag cgctatgcgc tcaagcgcgg cgtgggctac
     1981 ctgaacgata tccaaggatt tcctgaccct gcgctctatc ccgatattgc tgaggcggac
     2041 tgcaggctgg tggttatgca ctcagcgcag cgggatggca tcgccacccg caccggtcac
     2101 cttcgacccg aagacgcgct cgacgagatt gtgcggttct tcgaggcgcg ggtttccgcc
     2161 ttgcgacgga gcggggtcgc tgccgaccgg ctcatcctcg atccggggat gggatttttc
     2221 ttgagccccg caccggaaac atcgctgcac gtgctgtcga accttcaaaa gctgaagtcg
     2281 gcgttggggc ttccgctatt ggtctcggtg tcgcggaaat ccttcttggg cgccaccgtt
     2341 ggccttcctg taaaggatct gggtccagcg agccttgcgg cggaacttca cgggcactgt
     2401 tgcaaagtta gcgatgaggc agccttttgt
//
LOCUS       DADMJB010000423         1903 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H111440273
            SAMEA1570775-rid11410303.guided.303, whole genome shotgun sequence.
ACCESSION   DADMJB010000423 DADMJB010000000
VERSION     DADMJB010000423.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570775
            Sequence Read Archive: ERR182077
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1903)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1903)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941067.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941067.1
            Genome Coverage       :: 84x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 05:10:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,337
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 329
            CDSs (without protein)            :: 329
            Pseudo Genes (ambiguous residues) :: 0 of 329
            Pseudo Genes (frameshifted)       :: 182 of 329
            Pseudo Genes (incomplete)         :: 90 of 329
            Pseudo Genes (internal stop)      :: 96 of 329
            Pseudo Genes (multiple problems)  :: 37 of 329
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1903
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570775-rid11410303.guided.303"
                     /strain="H111440273"
                     /db_xref="taxon:621"
     gene            <1..290
                     /locus_tag="JN078_004418"
     CDS             <1..290
                     /locus_tag="JN078_004418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HAY9043342.1"
                     /translation="KFITTDYLQQCHMGQMVVTILSAVAQAERRRILERTNEGRQEAK
                     LKGIKFGRRRTVDRNVVLTLHQKGTGATEIAHQLSIARSTVYKILEDERAS"
     gene            473..1333
                     /locus_tag="JN078_004419"
     CDS             473..1333
                     /locus_tag="JN078_004419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032489893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A broad-spectrum beta-lactamase TEM-1"
                     /protein_id="HAY9043343.1"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGY
                     IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE
                     YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL
                     DRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPL
                     LRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIA
                     EIGASLIKHW"
     gene            1483..1884
                     /locus_tag="JN078_004420"
     CDS             1483..1884
                     /locus_tag="JN078_004420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001945043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
                     /protein_id="HAY9043344.1"
                     /translation="MAEQGKELPGYVQREFEEFLQCGRLEHGFLRVRCESCHAEHLVA
                     FSCKRRGFCPSCGARRMAESAALLVDEVLPEQPMRQWVLSFPFQLRFLFGVVCGKGRN
                     PTLRLWPAIFSGEIDVFPGDRRSRLIWHCCK"
BASE COUNT          481 a          423 c          501 g          498 t
ORIGIN      
        1 ataagtttat caccaccgac tatttgcaac agtgccatat ggggcaaatg gtggtcacca
       61 tcctgtcggc tgtggcacag gctgaacgcc ggaggatcct agaacgcacg aatgagggcc
      121 gacaggaagc aaagctgaaa ggaatcaaat ttggccgcag gcgtaccgtg gacaggaacg
      181 tcgtgctgac gcttcatcag aagggcactg gtgcaacgga aattgctcat cagctcagta
      241 ttgcccgctc cacggtttat aaaattcttg aagacgaaag ggcctcgtga tacgcctatt
      301 tttataggtt aatgtcatga taataatggt ttcttagacg tcaggtggca cttttcgggg
      361 aaatgtgcgc ggaaccccta tttgtttatt tttctaaata cattcaaata tgtatccgct
      421 catgagacaa taaccctggt aaatgcttca ataatattga aaaaggaaga gtatgagtat
      481 tcaacatttt cgtgtcgccc ttattccctt ttttgcggca ttttgccttc ctgtttttgc
      541 tcacccagaa acgctggtga aagtaaaaga tgctgaagat cagttgggtg cacgagtggg
      601 ttacatcgaa ctggatctca acagcggtaa gatccttgag agttttcgcc ccgaagaacg
      661 ttttccaatg atgagcactt ttaaagttct gctatgtggt gcggtattat cccgtgttga
      721 cgccgggcaa gagcaactcg gtcgccgcat acactattct cagaatgact tggttgagta
      781 ctcaccagtc acagaaaagc atcttacgga tggcatgaca gtaagagaat tatgcagtgc
      841 tgccataacc atgagtgata acactgctgc caacttactt ctgacaacga tcggaggacc
      901 gaaggagcta accgcttttt tgcacaacat gggggatcat gtaactcgcc ttgatcgttg
      961 ggaaccggag ctgaatgaag ccataccaaa cgacgagcgt gacaccacga tgcctgcagc
     1021 aatggcaaca acgttgcgca aactattaac tggcgaacta cttactctag cttcccggca
     1081 acaattaata gactggatgg aggcggataa agttgcagga ccacttctgc gctcggccct
     1141 tccggctggc tggtttattg ctgataaatc tggagccggt gagcgtgggt ctcgcggtat
     1201 cattgcagca ctggggccag atggtaagcc ctcccgtatc gtagttatct acacgacggg
     1261 gagtcaggca actatggatg aacgaaatag acagatcgct gagataggtg cctcactgat
     1321 taagcattgg taactgtcag accaagttta ctcatatata ctttagattg atttaaaact
     1381 tcatttttaa tttaaaagga tctaggtgaa gatccttttt gataatctca tgaccaaaat
     1441 cccttaacgt gagttttcgt tccactgagc gtcagacccc ttatggcaga gcagggaaag
     1501 gaattgccgg gctatgtgca acgggaattt gaagaatttc tccaatgcgg gcggctggag
     1561 catggctttc tacgggttcg ctgcgagtct tgccacgccg agcacctggt cgctttcagc
     1621 tgtaagcgtc gcggtttctg cccgagctgt ggggcgcggc ggatggccga aagtgccgcc
     1681 ttgctggttg atgaagtact gcctgaacaa cccatgcgtc agtgggtgtt gagcttcccg
     1741 tttcagctgc gtttcctgtt tggggtcgtt tgcgggaagg ggcggaatcc tacgctaagg
     1801 ctttggccag cgatattctc cggtgagatt gatgtgttcc caggggatag gagaagtcgc
     1861 ttgatatggc actgttgcaa atagtcggtg gtgataaact tat
//
